Query 012546
Match_columns 461
No_of_seqs 292 out of 1565
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 03:46:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012546.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012546hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0228 Beta-fructofuranosidas 100.0 2.3E-93 4.9E-98 735.1 22.0 336 109-447 41-379 (571)
2 COG1621 SacC Beta-fructosidase 100.0 5.5E-79 1.2E-83 640.9 31.0 304 117-449 28-346 (486)
3 PF00251 Glyco_hydro_32N: Glyc 100.0 2.6E-77 5.6E-82 602.1 24.5 294 122-434 1-306 (308)
4 TIGR01322 scrB_fam sucrose-6-p 100.0 2.2E-74 4.8E-79 607.9 32.1 301 117-450 13-334 (445)
5 smart00640 Glyco_32 Glycosyl h 100.0 3.7E-73 7.9E-78 597.5 32.5 306 122-449 1-321 (437)
6 cd08996 GH32_B_Fructosidase Gl 100.0 4E-67 8.7E-72 522.2 31.2 286 128-442 1-298 (298)
7 cd08995 GH32_Aec43_like Glycos 100.0 6.8E-55 1.5E-59 431.0 30.9 263 131-428 1-275 (280)
8 cd08979 GH_J Glycosyl hydrolas 100.0 5E-39 1.1E-43 313.5 26.6 242 132-405 8-264 (276)
9 cd08772 GH43_62_32_68 Glycosyl 100.0 2E-36 4.4E-41 294.7 27.5 268 131-426 1-285 (286)
10 cd08997 GH68 Glycosyl hydrolas 99.9 2E-25 4.2E-30 228.5 24.0 184 131-318 8-246 (349)
11 cd08994 GH43_like_2 Glycosyl h 99.9 3.1E-22 6.8E-27 199.1 19.0 189 121-318 4-282 (291)
12 cd08984 GH43_5 Glycosyl hydrol 99.8 8.2E-20 1.8E-24 182.9 20.1 185 107-318 51-246 (294)
13 cd08993 GH43_DUF377 Glycosyl h 99.8 1.1E-19 2.3E-24 179.4 19.6 161 132-313 2-169 (268)
14 cd09004 GH43_bXyl Glycosyl hyd 99.8 3.3E-19 7.1E-24 176.2 20.0 192 127-353 5-197 (275)
15 cd08999 GH43_ABN_2 Glycosyl hy 99.8 5.9E-17 1.3E-21 160.3 21.6 206 128-364 6-224 (287)
16 cd08990 GH43_AXH_like Glycosyl 99.7 6.2E-16 1.4E-20 152.9 20.0 195 132-353 2-206 (274)
17 cd08978 GH_F Glycosyl hydrolas 99.7 6.9E-15 1.5E-19 142.9 20.2 201 132-363 2-213 (271)
18 cd08991 GH43_bXyl_2 Glycosyl h 99.6 3.4E-14 7.3E-19 141.6 20.5 189 132-353 2-213 (294)
19 cd08998 GH43_ABN_1 Glycosyl hy 99.6 2.4E-13 5.3E-18 135.4 20.2 169 130-318 1-182 (288)
20 cd08992 GH43_like_1 Glycosyl h 99.6 1.3E-13 2.8E-18 141.6 17.6 171 118-296 24-241 (349)
21 cd08984 GH43_5 Glycosyl hydrol 99.5 4.4E-13 9.6E-18 134.4 18.6 169 130-318 11-193 (294)
22 PF11837 DUF3357: Domain of un 99.5 4.3E-15 9.4E-20 128.5 -0.9 101 12-114 5-106 (106)
23 cd08985 GH43_6 Glycosyl hydrol 99.5 1.4E-11 3.1E-16 122.0 24.0 197 132-364 5-211 (265)
24 cd08979 GH_J Glycosyl hydrolas 99.4 6.7E-12 1.4E-16 122.5 14.6 158 107-275 37-209 (276)
25 PF04616 Glyco_hydro_43: Glyco 99.4 7.2E-11 1.6E-15 116.3 20.7 183 128-344 8-200 (286)
26 PF04041 DUF377: Domain of unk 99.4 3.3E-12 7.2E-17 129.9 11.2 197 135-358 36-242 (312)
27 cd09000 GH43_XYL_1 Glycosyl hy 99.3 8.9E-11 1.9E-15 117.1 19.9 168 128-318 6-186 (288)
28 cd09003 GH43_AXH_1 Glycosyl hy 99.3 1.6E-10 3.4E-15 117.3 21.0 176 128-318 7-205 (311)
29 cd08983 GH43_4 Glycosyl hydrol 99.3 4.4E-10 9.6E-15 112.2 22.7 203 127-364 15-227 (276)
30 cd08992 GH43_like_1 Glycosyl h 99.3 1.9E-10 4.2E-15 118.4 17.8 189 109-316 85-308 (349)
31 cd08981 GH43_2 Glycosyl hydrol 99.2 2.6E-09 5.7E-14 107.5 20.2 135 128-274 4-142 (291)
32 cd08988 GH43_ABN Glycosyl hydr 99.1 3.7E-09 8E-14 105.4 19.8 170 131-318 1-183 (279)
33 cd08989 GH43_XYL Glycosyl hydr 99.0 2.4E-08 5.2E-13 99.2 19.4 125 128-274 6-136 (269)
34 cd08980 GH43_1 Glycosyl hydrol 99.0 4.2E-08 9E-13 97.9 19.3 188 132-354 2-205 (288)
35 cd09001 GH43_XYL_2 Glycosyl hy 98.9 7.8E-08 1.7E-12 95.5 19.2 159 128-318 9-181 (269)
36 cd08986 GH43_7 Glycosyl hydrol 98.9 6.9E-08 1.5E-12 96.0 18.0 130 129-274 1-150 (269)
37 cd08993 GH43_DUF377 Glycosyl h 98.9 9.4E-09 2E-13 101.6 11.5 99 193-300 3-105 (268)
38 COG2152 Predicted glycosylase 98.8 5.6E-08 1.2E-12 97.4 12.5 151 135-301 35-193 (314)
39 PF02435 Glyco_hydro_68: Levan 98.8 3.7E-07 8.1E-12 95.8 18.4 184 131-318 63-309 (428)
40 cd08987 GH62 Glycosyl hydrolas 98.8 6E-07 1.3E-11 90.1 19.0 210 115-365 6-230 (303)
41 cd08982 GH43_3 Glycosyl hydrol 98.8 4.7E-07 1E-11 91.5 18.4 108 131-275 4-111 (295)
42 cd08995 GH32_Aec43_like Glycos 98.8 3E-07 6.4E-12 91.2 16.6 152 110-275 37-200 (280)
43 cd09002 GH43_XYL_3 Glycosyl hy 98.7 1.4E-07 3.1E-12 94.3 13.1 122 128-274 13-134 (280)
44 cd08994 GH43_like_2 Glycosyl h 98.7 1E-07 2.2E-12 95.0 12.0 108 131-243 81-198 (291)
45 cd08978 GH_F Glycosyl hydrolas 98.6 1.4E-06 2.9E-11 84.7 16.2 156 127-296 56-215 (271)
46 cd08999 GH43_ABN_2 Glycosyl hy 98.6 1.5E-06 3.2E-11 86.1 16.0 154 130-297 62-226 (287)
47 cd08772 GH43_62_32_68 Glycosyl 98.5 3.3E-06 7.3E-11 82.2 15.3 157 128-296 58-224 (286)
48 cd08983 GH43_4 Glycosyl hydrol 98.5 1.3E-06 2.8E-11 87.4 11.7 79 238-319 4-88 (276)
49 cd08991 GH43_bXyl_2 Glycosyl h 98.5 7.4E-06 1.6E-10 81.7 17.1 154 129-296 54-227 (294)
50 cd08990 GH43_AXH_like Glycosyl 98.4 8E-06 1.7E-10 80.9 16.2 152 128-300 62-220 (274)
51 cd08986 GH43_7 Glycosyl hydrol 98.4 2.8E-06 6E-11 84.5 12.8 64 254-318 2-88 (269)
52 PF04041 DUF377: Domain of unk 98.4 1E-06 2.2E-11 89.8 9.7 109 186-302 28-138 (312)
53 cd08996 GH32_B_Fructosidase Gl 98.4 3.7E-06 8E-11 84.0 12.8 154 109-275 38-201 (298)
54 cd08998 GH43_ABN_1 Glycosyl hy 98.3 2E-05 4.4E-10 78.6 16.8 152 129-294 57-217 (288)
55 PF04616 Glyco_hydro_43: Glyco 98.1 4.3E-05 9.4E-10 75.3 13.9 172 110-296 40-222 (286)
56 cd08989 GH43_XYL Glycosyl hydr 98.1 6.3E-05 1.4E-09 74.8 13.6 68 240-318 1-77 (269)
57 cd08981 GH43_2 Glycosyl hydrol 98.1 5.6E-05 1.2E-09 76.2 13.4 67 252-318 4-77 (291)
58 TIGR01322 scrB_fam sucrose-6-p 98.0 5.4E-05 1.2E-09 80.7 13.6 155 110-275 62-225 (445)
59 cd09002 GH43_XYL_3 Glycosyl hy 98.0 0.00012 2.5E-09 73.4 13.7 78 239-343 7-84 (280)
60 cd08997 GH68 Glycosyl hydrolas 97.9 0.00031 6.8E-09 72.9 15.3 148 139-295 80-284 (349)
61 smart00640 Glyco_32 Glycosyl h 97.8 0.00019 4.2E-09 76.3 12.3 157 108-275 43-215 (437)
62 cd08988 GH43_ABN Glycosyl hydr 97.7 0.0016 3.4E-08 65.1 17.1 147 130-291 57-214 (279)
63 COG2152 Predicted glycosylase 97.7 0.00011 2.3E-09 74.2 8.5 116 177-301 12-140 (314)
64 cd09004 GH43_bXyl Glycosyl hyd 97.7 0.001 2.2E-08 65.9 15.5 138 132-297 68-212 (275)
65 cd08980 GH43_1 Glycosyl hydrol 97.7 0.0012 2.6E-08 65.9 15.4 147 124-274 107-259 (288)
66 cd08985 GH43_6 Glycosyl hydrol 97.6 0.0029 6.3E-08 62.9 16.4 145 130-299 65-215 (265)
67 cd09001 GH43_XYL_2 Glycosyl hy 97.6 0.0025 5.4E-08 63.4 15.4 132 131-295 77-212 (269)
68 cd09003 GH43_AXH_1 Glycosyl hy 97.4 0.0072 1.6E-07 61.5 16.7 167 112-300 55-248 (311)
69 cd09000 GH43_XYL_1 Glycosyl hy 97.4 0.0076 1.6E-07 60.2 16.7 143 130-296 68-219 (288)
70 cd00260 Sialidase Sialidases o 97.3 0.0076 1.6E-07 61.5 16.0 167 115-298 59-240 (351)
71 COG3507 XynB Beta-xylosidase [ 97.2 0.0029 6.2E-08 68.5 11.6 140 162-318 56-215 (549)
72 PF03664 Glyco_hydro_62: Glyco 97.1 0.059 1.3E-06 53.2 18.9 175 120-319 13-196 (271)
73 PF13088 BNR_2: BNR repeat-lik 97.1 0.0046 1E-07 60.5 11.3 165 115-297 31-200 (275)
74 cd08982 GH43_3 Glycosyl hydrol 96.6 0.031 6.7E-07 56.6 12.9 134 127-272 88-237 (295)
75 PF00251 Glyco_hydro_32N: Glyc 96.5 0.04 8.6E-07 55.9 12.6 137 110-260 45-190 (308)
76 PF13088 BNR_2: BNR repeat-lik 96.2 0.071 1.5E-06 52.1 12.6 146 141-299 1-153 (275)
77 cd08987 GH62 Glycosyl hydrolas 96.0 0.17 3.8E-06 51.4 14.4 143 131-296 79-230 (303)
78 PF13859 BNR_3: BNR repeat-lik 92.8 0.49 1.1E-05 48.6 8.7 90 193-300 124-216 (310)
79 cd00260 Sialidase Sialidases o 92.4 9.5 0.00021 38.8 17.7 146 158-318 45-207 (351)
80 COG3940 Predicted beta-xylosid 91.7 1.2 2.6E-05 43.6 9.3 105 136-245 137-248 (324)
81 PF13810 DUF4185: Domain of un 85.6 19 0.00042 37.1 13.8 160 129-300 93-276 (316)
82 PTZ00334 trans-sialidase; Prov 83.7 7.1 0.00015 44.9 10.4 87 193-298 263-351 (780)
83 PF13810 DUF4185: Domain of un 76.3 13 0.00028 38.4 8.7 95 198-298 102-211 (316)
84 COG3507 XynB Beta-xylosidase [ 69.6 4.2 9.1E-05 44.7 3.4 53 239-301 22-74 (549)
85 PF15176 LRR19-TM: Leucine-ric 59.9 19 0.00041 31.2 4.8 30 28-57 9-38 (102)
86 PF02435 Glyco_hydro_68: Levan 59.6 1.8E+02 0.0039 31.5 13.2 128 140-276 143-320 (428)
87 PF03664 Glyco_hydro_62: Glyco 45.9 3.3E+02 0.0073 27.5 14.2 71 131-211 77-153 (271)
88 PF10898 DUF2716: Protein of u 37.2 23 0.00051 32.5 2.1 37 113-149 80-120 (143)
89 KOG0228 Beta-fructofuranosidas 32.9 1.5E+02 0.0033 32.8 7.6 79 199-286 68-150 (571)
90 COG1621 SacC Beta-fructosidase 31.2 3.9E+02 0.0084 29.5 10.5 117 112-237 79-204 (486)
91 PF11807 DUF3328: Domain of un 30.0 71 0.0015 29.5 4.2 11 29-39 3-13 (217)
92 PF12273 RCR: Chitin synthesis 27.9 56 0.0012 29.0 2.9 11 140-150 81-91 (130)
93 PF12111 PNPase_C: Polyribonuc 24.6 25 0.00054 25.3 0.0 12 115-126 7-18 (39)
No 1
>KOG0228 consensus Beta-fructofuranosidase (invertase) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-93 Score=735.05 Aligned_cols=336 Identities=51% Similarity=0.917 Sum_probs=322.3
Q ss_pred CcccccccccceeeeecCCCcccCCccceEECCEEEEEEEeCCCCCCCCCcEEEEEEecCCcCcccCceecCCCCcccCC
Q 012546 109 WTNAMFTWQRTSFHFQPEKNWMNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMVPDQWYDIN 188 (461)
Q Consensus 109 ~~~~~~~w~Rp~fHf~P~~gwmNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~Pd~~~D~~ 188 (461)
|++...+++||.|||||++|||||| +|++|+|||||||||++++||+++||||||+|||||+.+|+||.|++++|.+
T Consensus 41 ~~~~~n~~~Rp~~HFqP~k~wMN~P---~~ykG~yHLFyQyNP~gavwg~ivWGHavSkDLinW~~lp~Ai~Ps~~~din 117 (571)
T KOG0228|consen 41 PSNTVNQPDRPGFHFQPPKGWMNDP---MYYKGKYHLFYQYNPKGAVWGNIVWGHAVSKDLINWEALPPAIAPSEWFDIN 117 (571)
T ss_pred ccccccccCCceeecCCCcccccCc---cccCcEEEEEEecCCCCceeeeeEeeeecchhhccccccCcccCCCCccccC
Confidence 6777788999999999999999988 8999999999999999999999999999999999999999999999999999
Q ss_pred CeEeeeEEEccCCcEEEEEcccCCCccceEEEEEecCCCCCCcceEEEcCCCceecCC--CCCCCCCCCCCeeEeecCCC
Q 012546 189 GVWTGSATILPDGQIVMLYTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPP--RHIGPKDFRDPTTAWAGPDG 266 (461)
Q Consensus 189 Gv~SGSavv~~dG~~~~~YTG~~~~~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p--~g~~~~dfRDP~V~w~~~dG 266 (461)
|||||||+++++|+.++||||...+.+|+|.+|++.|.+||.|+.|+|.++||++.++ .++....||||+++|.+++|
T Consensus 118 g~wSGSati~~~~~~vilytg~d~~~rqVqn~a~p~d~sdp~l~~w~k~~gnp~~~p~~V~~in~s~FRDPttaW~~~dg 197 (571)
T KOG0228|consen 118 GCWSGSATIDPNNSPVILYTGIDPNNRQVQNYAYPKDVSDPQLIAWSKDGGNPFMKPDKVLGINSSQFRDPTTAWFGQDG 197 (571)
T ss_pred ccccceEEEccCCCeEEEecccCcCceEEEEEeccCCCCchhhheeecCCCceeeccccccCCChhhccCCceeeecCCC
Confidence 9999999999999999999999988899999999999999999999999999999988 68888999999999999999
Q ss_pred cEEEEEeeecCCceEEEEEEeCCCCCCEEcccccccCCCCceeeeeeEEEecccCcccccccCCCCCeEEEEeeeeCCCc
Q 012546 267 KWRLTIGSKIGKTGISLVYQTTDFKTYELLDEYLHAVPGTGMWECVDFYPVAINGSVGLDTSATGPGIKHVLKASLDDTK 346 (461)
Q Consensus 267 ~w~MviGa~~~~~G~v~lY~S~Dl~~W~~~~~l~~~~~~~gmwECPdlf~l~~~~~~~l~~s~~G~~~k~vl~~S~~~~~ 346 (461)
+|+|++|++.+++|.+.+|+|+||++|+..+.+++....+|||||||||||+.++.++++++..|+..|||+++|+++++
T Consensus 198 kWrm~vgsk~~q~g~a~~Y~S~Df~~W~k~~~~~h~~~~tgmwECPdffpVs~tg~~g~d~s~~~~~nkhvlkasl~gt~ 277 (571)
T KOG0228|consen 198 KWRMTVGSKIKQRGKAIIYSSDDFKHWTKSSVPLHSGDLTGMWECPDFFPVSITGTDGLDWSLFGSINKHVLKASLGGTS 277 (571)
T ss_pred cEEEEEEeecCccceEEEEeccchhhhhcccccccccCccceEECCCcEEecccCCCCceEEEeccccccccccccCCce
Confidence 99999999988899999999999999999999999888899999999999999999999999999888999999999999
Q ss_pred ceEEEEeeecCCCCcccCCCCCcccCccceeccCCCcccceeecCCCCcEEEEEEecCCCCCCCCcCCCccceeeeeEEE
Q 012546 347 VDHYAIGTYNPANDKWTPDNPEEDVGIGLKWDYGRYYASKSFYDPYKKRRIVWGWINETDTESDDLEKGWASVQVQFLNL 426 (461)
Q Consensus 347 ~~~Y~iG~~d~~~~~f~p~~~~~d~g~~~rlD~G~fYAs~tf~d~~~gRrIl~GWi~e~d~~~~~~~~GWag~lslPR~L 426 (461)
.++|.||+||.++.+|+||+...++..++|+|||+|||+|||+|..++|||+|||++|+++..++..+||+|+|+|||++
T Consensus 278 ~d~Y~IG~yd~~~~~fvpd~~~~~~~~dlr~Dyg~~YASkTFfds~~~rrIlwgWa~es~~~~dd~~kgw~g~qtipRki 357 (571)
T KOG0228|consen 278 NDQYFIGTYDGEKDTFVPDDGFSRVSVDLRYDYGKYYASKTFFDSVKGRRILWGWASESDYTNDDPTKGWRGLQTIPRKI 357 (571)
T ss_pred eEEEEEecccCCcceeeccCCcccccccccccchhhhhhhhhccccCCcEEEEEecccCcccccchhcccccccccceEE
Confidence 99999999999999999999888887789999999999999999999999999999999999999999999999999999
Q ss_pred eecc-eEEEechhhHHHHHhhc
Q 012546 427 ENAN-FIFFLHIYLTKQVHNFF 447 (461)
Q Consensus 427 ~~~~-~~~~~~~~p~~ev~~l~ 447 (461)
.+.. .-.++.+-|++|++.||
T Consensus 358 ~Ld~~s~k~l~qwpv~eie~Lr 379 (571)
T KOG0228|consen 358 WLDTESGKQLTQWPVEEIEPLR 379 (571)
T ss_pred EeeccCCCcccccchheeeccc
Confidence 9985 66678889999999999
No 2
>COG1621 SacC Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.5e-79 Score=640.85 Aligned_cols=304 Identities=34% Similarity=0.701 Sum_probs=263.9
Q ss_pred ccceeeeecCCCcccCCccceEECCEEEEEEEeCCCCCCCCCcEEEEEEecCCcCcccCceecCCCCcccCCCeEeeeEE
Q 012546 117 QRTSFHFQPEKNWMNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMVPDQWYDINGVWTGSAT 196 (461)
Q Consensus 117 ~Rp~fHf~P~~gwmNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~Pd~~~D~~Gv~SGSav 196 (461)
+||.|||+|+.||||||||++|++|+|||||||||+++.||+++||||+|+|||||+++|+||.|+.+||.+||||||||
T Consensus 28 ~Rp~yHftP~~G~mNDPNG~iy~~G~yHlFYQ~~P~~~~~g~~~WgHa~S~Dlv~W~~~piaL~Pd~~~d~~g~ySGSAV 107 (486)
T COG1621 28 YRPQYHFTPPTGWLNDPNGLIYFDGKYHLFYQYNPFGAAHGPKHWGHAVSKDLVHWEHLPIALAPDDDYDSHGCYSGSAV 107 (486)
T ss_pred CCceeeecCCcCceECCCceeEECCEEEEEEecCCCCCCCCCceeeeeccCCcccceECCceecCCCccccCCceeeeEE
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred EccCCcEEEEEcccCC----CccceEEEEEecCCCCCCcceEEEcCCCceecCCCCCCCCCCCCCeeEeecCCCcEEEEE
Q 012546 197 ILPDGQIVMLYTGSTD----KSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTI 272 (461)
Q Consensus 197 v~~dG~~~~~YTG~~~----~~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP~V~w~~~dG~w~Mvi 272 (461)
+ .+|++.+||||+.+ .+.+.||+|+|+|+ .+|+|+.+|||+..|+++ +.+||||+|+|. ++|+|+|++
T Consensus 108 ~-~~~~l~lfytg~v~~~~~~r~~~Q~iA~s~dg-----~~f~K~~~~~i~~~p~~~-t~hFRDPKv~w~-~~~~~~~ml 179 (486)
T COG1621 108 V-DDGNLSLFYTGNVRDSNGIRQQTQCIAYSEDG-----GTFEKYSGNPIIDQPEGY-TPHFRDPKVVWD-EGGKWWMML 179 (486)
T ss_pred E-eCCcEEEEEccceeccCCcceeEEEEEEEcCC-----CceEeccCCceecCCCcc-cccCCCCccccc-CCCcEEEEE
Confidence 6 68999999999874 34679999999996 789998789999988886 789999998796 789999999
Q ss_pred eeec-CCceEEEEEEeCCCCCCEEcccccccCCCCc-eeeeeeEEEecccCcccccccCCCCCeEEEEeeeeCC-----C
Q 012546 273 GSKI-GKTGISLVYQTTDFKTYELLDEYLHAVPGTG-MWECVDFYPVAINGSVGLDTSATGPGIKHVLKASLDD-----T 345 (461)
Q Consensus 273 Ga~~-~~~G~v~lY~S~Dl~~W~~~~~l~~~~~~~g-mwECPdlf~l~~~~~~~l~~s~~G~~~k~vl~~S~~~-----~ 345 (461)
||+. +..|.|++|+|+||++|++.+++..+....| ||||||||.|++. +.+.+|++| .+.+. .
T Consensus 180 gAq~~~~~g~i~lY~S~DL~~W~~~g~~~~~~~~~gym~ECPdlf~l~~~--~~~~~~pqg--------~~~~~~~~~n~ 249 (486)
T COG1621 180 GAQGEDLKGTILLYESDDLKNWQFTGEFGLEQGGLGYMWECPDLFELDGE--DVLLFWPQG--------LSINGGEYDNI 249 (486)
T ss_pred EEecCCCCceEEEEeCCCccCcEEEEeeccCCCceeeEEECCCeEEecCc--CceEEccee--------eecCCCcCCCc
Confidence 9984 6679999999999999999999987644444 9999999999864 445555444 33322 2
Q ss_pred cceEEEEeeecCCCCcccCCCCCcccCccceeccC-CCcccceeecCCCCcEEEEEEecCCCCC--CCCcCCCccceeee
Q 012546 346 KVDHYAIGTYNPANDKWTPDNPEEDVGIGLKWDYG-RYYASKSFYDPYKKRRIVWGWINETDTE--SDDLEKGWASVQVQ 422 (461)
Q Consensus 346 ~~~~Y~iG~~d~~~~~f~p~~~~~d~g~~~rlD~G-~fYAs~tf~d~~~gRrIl~GWi~e~d~~--~~~~~~GWag~lsl 422 (461)
....|++|.||++ +|...+. -..+||+| +|||+|||.++ ++|||++|||++|+.. .++...||+|||||
T Consensus 250 ~~~~Y~vG~~dg~--~f~~~~~-----~~~~LD~G~DfYApQtf~~~-dgrri~igWmg~w~~~~~~PT~~~~w~~~mTl 321 (486)
T COG1621 250 YQSGYFVGDFDGK--EFKLDDG-----QFRELDFGFDFYAPQTFLDP-DGRRILIGWMGNWDYTNNYPTIDEGWRGAMTL 321 (486)
T ss_pred ceeEEEEEeeccc--eeEecCC-----CceecccCccccceeeccCC-CCCEEEEEeccCccccCCCCccccCcCcccee
Confidence 2467999999987 4554332 13579999 99999999996 7999999999999987 66777899999999
Q ss_pred eEEEeec-ceEEEechhhHHHHHhhccc
Q 012546 423 FLNLENA-NFIFFLHIYLTKQVHNFFYF 449 (461)
Q Consensus 423 PR~L~~~-~~~~~~~~~p~~ev~~l~~~ 449 (461)
||+|++. ++++| +|++||..||+.
T Consensus 322 pRel~l~~~~L~Q---~Pi~~l~~lr~~ 346 (486)
T COG1621 322 PRELTLEDGKLYQ---TPVRELESLRKP 346 (486)
T ss_pred eEEEEEcCCeEEe---cchHHHHhhhcc
Confidence 9999996 67664 999999999976
No 3
>PF00251 Glyco_hydro_32N: Glycosyl hydrolases family 32 N-terminal domain; InterPro: IPR013148 This domain corresponds to the N-terminal domain of glycosyl transferase family 32 which forms a five bladed beta propeller structure []. ; PDB: 2AEZ_A 2ADE_A 2ADD_A 1ST8_A 2AEY_A 3UGG_A 3UGH_B 3UGF_B 1Y9M_A 1Y4W_A ....
Probab=100.00 E-value=2.6e-77 Score=602.08 Aligned_cols=294 Identities=41% Similarity=0.828 Sum_probs=245.3
Q ss_pred eeecCCCcccCCccceEECCEEEEEEEeCCCCCCCCCcEEEEEEecCCcCcccCceecCCCCcccCCCeEeeeEEEccCC
Q 012546 122 HFQPEKNWMNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMVPDQWYDINGVWTGSATILPDG 201 (461)
Q Consensus 122 Hf~P~~gwmNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~Pd~~~D~~Gv~SGSavv~~dG 201 (461)
||+|++||||||||++|++|+|||||||||+++.||+++||||+|+|||||+++|+||.|++++|++||||||++++ ++
T Consensus 1 H~~p~~gw~NDPnG~~~~~G~yHlFyQ~~P~~~~~g~~~WgHa~S~Dlv~W~~~~~aL~P~~~~d~~g~~SGs~~~~-~~ 79 (308)
T PF00251_consen 1 HFTPPKGWMNDPNGLVYYDGKYHLFYQYNPFGPEWGNMHWGHATSKDLVHWEHLPVALPPDEEYDADGCFSGSAVVD-DD 79 (308)
T ss_dssp SBB-SSEEEEEEEEEEEETTEEEEEEEEETTSSSS-SBEEEEEEESSSSSEEEEEEEE-SSSGGGTTEEEEEEEEEE-TT
T ss_pred CCCCCCCCeECCccCeEeCCEEEEEeccCCCCcccceeEEEEEECCCCCCceeCCceEcccccCCcCccCcceEEEE-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999875 55
Q ss_pred cEEEEEcccCCCccceEEEEEecCCCCCCcceEEEcC-CCceecC-CCCCCCCCCCCCeeEeecCCCcEEEEEeeecCCc
Q 012546 202 QIVMLYTGSTDKSVQVQNLAYPADPSDPLLLDWVKYP-GNPVLVP-PRHIGPKDFRDPTTAWAGPDGKWRLTIGSKIGKT 279 (461)
Q Consensus 202 ~~~~~YTG~~~~~~q~q~lA~S~D~~d~lL~~W~K~~-~nPVl~~-p~g~~~~dfRDP~V~w~~~dG~w~MviGa~~~~~ 279 (461)
+++|||||..++..|.|++|+|.|.+ .+|+|++ +||||.. |++ ...+||||+|+|. .+|+|+|++|++....
T Consensus 80 ~~~~~YTg~~~~~~~~q~~A~s~d~~----~~w~k~~~~~pvi~~~p~~-~~~~~RDP~v~~~-~~~~~~m~~g~~~~~~ 153 (308)
T PF00251_consen 80 NLVLFYTGNNRDGKQVQCLAYSTDDG----ITWTKYPQGNPVIPEPPPG-DTTDFRDPKVFWR-EDGRWYMLLGAGRDGR 153 (308)
T ss_dssp CEEEEEEEEETTTEEEEEEEEESSTT----SSEEE-TTTCESBESSSTT-SCTSEEEEEEEEE-CTTEEEEEEEEEETTE
T ss_pred EEEEEEeccCCCCCeEEEEEEECCCC----CceEEcCCCCcEEEecccC-CCCccccCeEEEe-cCCEEEEEEeccccCc
Confidence 89999999987668999999996653 8999998 4999985 444 7789999999887 5699999999987788
Q ss_pred eEEEEEEeCCCCCCEEcccccccCC-CCceeeeeeEEEecccCcccccccCCCCCeEEEEeeee----CCCcceEEEEee
Q 012546 280 GISLVYQTTDFKTYELLDEYLHAVP-GTGMWECVDFYPVAINGSVGLDTSATGPGIKHVLKASL----DDTKVDHYAIGT 354 (461)
Q Consensus 280 G~v~lY~S~Dl~~W~~~~~l~~~~~-~~gmwECPdlf~l~~~~~~~l~~s~~G~~~k~vl~~S~----~~~~~~~Y~iG~ 354 (461)
|++++|+|+||++|++.+.+..... ..+||||||||+|++.+. .+...+|||++|. .....++|+||+
T Consensus 154 g~i~~y~S~Dl~~W~~~~~l~~~~~~~g~~~ECPdlf~l~~~~~-------~~~~~~~vl~~s~~g~~~~~~~~~Y~vG~ 226 (308)
T PF00251_consen 154 GCILLYTSDDLIHWEYLGPLFIPGDNGGGMWECPDLFPLDGKGD-------GTGKWVWVLIFSPQGIEDNGHGTYYMVGD 226 (308)
T ss_dssp EEEEEEEESSSSSEEEEEEESEEETTTSSEEEEEEEEEEEBTTS-------SSEEEEEEEEEEEESTTTTTTEEEEEEEE
T ss_pred ceEEEEEcCCcccCceeCcccccccccccccccceEEEECCccc-------ccceEEEEEEecccccccccccceEEeEE
Confidence 9999999999999999999886543 345999999999987511 1234578999988 455678999999
Q ss_pred ecCCCCcccCCCCCcccCccceeccC-CCcccceeecCCCCcEEEEEEecCCCCCCCC-cCCCccceeeeeEEEeec---
Q 012546 355 YNPANDKWTPDNPEEDVGIGLKWDYG-RYYASKSFYDPYKKRRIVWGWINETDTESDD-LEKGWASVQVQFLNLENA--- 429 (461)
Q Consensus 355 ~d~~~~~f~p~~~~~d~g~~~rlD~G-~fYAs~tf~d~~~gRrIl~GWi~e~d~~~~~-~~~GWag~lslPR~L~~~--- 429 (461)
||..+.+|+++.. ...++|+| +|||+|||.++.++|||+||||++++..... ...||+|+|||||+|+++
T Consensus 227 ~d~~~~~f~~~~~-----~~~~lD~G~dfYA~qtf~~~~~~r~i~~gW~~~~~~~~~~~~~~gW~g~lslPR~l~l~~~~ 301 (308)
T PF00251_consen 227 FDFDGGTFTPDDS-----SFQRLDYGFDFYAPQTFYDPDGGRRILIGWMGEWDYNADDYPTYGWAGCLSLPRELTLKDEG 301 (308)
T ss_dssp EETTTTEEEESST-----TSEESBSSSS-EEEEEEEETTTTEEEEEEEES-TTTHHHHCHGHTEE-EE---EEEEEETTS
T ss_pred ecCCCCeeeeecc-----ccceeccCccccCCchhcCCCcCcEEEEEEecCCCcccccCCCCCCccEEEeCEEEEEEECC
Confidence 9877889987621 24789999 6999999999865699999999999876433 369999999999999994
Q ss_pred ceEEE
Q 012546 430 NFIFF 434 (461)
Q Consensus 430 ~~~~~ 434 (461)
+.|+|
T Consensus 302 ~~L~q 306 (308)
T PF00251_consen 302 GRLYQ 306 (308)
T ss_dssp SSEEE
T ss_pred CeEEE
Confidence 66655
No 4
>TIGR01322 scrB_fam sucrose-6-phosphate hydrolase.
Probab=100.00 E-value=2.2e-74 Score=607.90 Aligned_cols=301 Identities=31% Similarity=0.571 Sum_probs=256.5
Q ss_pred ccceeeeecCCCcccCCccceEECCEEEEEEEeCCCCCCCCCcEEEEEEecCCcCcccCceecCCCCcccCCCeEeeeEE
Q 012546 117 QRTSFHFQPEKNWMNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMVPDQWYDINGVWTGSAT 196 (461)
Q Consensus 117 ~Rp~fHf~P~~gwmNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~Pd~~~D~~Gv~SGSav 196 (461)
+||+|||+|+.||||||||++|++|+||||||+||.+..||+++||||+|+|||||+++|+||.|+++||..|||||||+
T Consensus 13 ~rp~~H~~p~~gw~nDPng~~~~~G~yHlfyq~~p~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~~~d~~G~~sGsav 92 (445)
T TIGR01322 13 WRPTFHIQPQTGLLNDPNGLIYFKGEYHLFYQWFPFGPVHGLKSWGHYTSKDLVHWEDEGVALAPDDPYDSHGCYSGSAV 92 (445)
T ss_pred cCccCccCCCcCCccCCCcceEECCEEEEEEccCCCCCccCceEEEEEECCCccccEECCccCcCCCcccCCceEECeEE
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred EccCCcEEEEEcccCC----CccceEEEEEecCCCCCCcceEEEcCCCceecCCCCCCCCCCCCCeeEeecCCCcEEEEE
Q 012546 197 ILPDGQIVMLYTGSTD----KSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTI 272 (461)
Q Consensus 197 v~~dG~~~~~YTG~~~----~~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP~V~w~~~dG~w~Mvi 272 (461)
+ .+|+++|||||+.+ ...+.|++|+|.|+ .+|+|+. +|||.+++.....+||||+| |. .+|+|+|++
T Consensus 93 ~-~~g~~~l~YTg~~~~~~~~~~~~q~lA~S~Dg-----~~~~k~~-~pvi~~~~~~~~~~fRDP~V-~~-~~g~~~M~~ 163 (445)
T TIGR01322 93 D-NNGQLTLMYTGNVRDSDWNRESYQCLATMDDD-----GHFEKFG-IVVIELPPAGYTAHFRDPKV-WK-HNGHWYMVI 163 (445)
T ss_pred e-eCCEEEEEEeccccCCCCCeeEEEEEEEcCCC-----CeEEECC-CceEeCCCCCCcCcCCCCcE-Ee-ECCEEEEEE
Confidence 6 78999999999753 23578999999986 6999974 59998755544578999999 54 578999999
Q ss_pred eeec-CCceEEEEEEeCCCCCCEEcccccccC----CCCc-eeeeeeEEEecccCcccccccCCCCCeEEEEeeeeCC--
Q 012546 273 GSKI-GKTGISLVYQTTDFKTYELLDEYLHAV----PGTG-MWECVDFYPVAINGSVGLDTSATGPGIKHVLKASLDD-- 344 (461)
Q Consensus 273 Ga~~-~~~G~v~lY~S~Dl~~W~~~~~l~~~~----~~~g-mwECPdlf~l~~~~~~~l~~s~~G~~~k~vl~~S~~~-- 344 (461)
|++. +..|++++|+|+||++|++.+++.... ...| ||||||||+|++ ||||.+|...
T Consensus 164 g~~~~~~~g~i~ly~S~Dl~~W~~~g~~~~~~~~~~~~~g~~~ECPdlf~l~~---------------k~vL~~s~~g~~ 228 (445)
T TIGR01322 164 GAQTETEKGSILLYRSKDLKNWTFVGEILGDGQNGLDDRGYMWECPDLFSLDG---------------QDVLLFSPQGLD 228 (445)
T ss_pred EEecCCCceEEEEEECCCcccCeEecccccccccccCCccceEECCeEEEECC---------------cEEEEEeccccC
Confidence 9874 456899999999999999999987543 2234 999999999963 4555554322
Q ss_pred --------CcceEEEEeeecCCCCcccCCCCCcccCccceeccC-CCcccceeecCCCCcEEEEEEecCCCCCCCCcCCC
Q 012546 345 --------TKVDHYAIGTYNPANDKWTPDNPEEDVGIGLKWDYG-RYYASKSFYDPYKKRRIVWGWINETDTESDDLEKG 415 (461)
Q Consensus 345 --------~~~~~Y~iG~~d~~~~~f~p~~~~~d~g~~~rlD~G-~fYAs~tf~d~~~gRrIl~GWi~e~d~~~~~~~~G 415 (461)
.....|++|+||..+.+|++++. ..++|+| +|||+|||.++ ++||||||||++++...+..+.|
T Consensus 229 ~~~~~~~~~~~~~Y~vG~~d~~~~~f~~~~~------~~~lD~G~dfYA~qtf~~~-~gr~i~~gW~~~~~~~~~~~~~~ 301 (445)
T TIGR01322 229 ASGYDYQNIYQNGYIVGQLDYEAPEFTHGTE------FHELDYGFDFYAPQTFLAP-DGRRILVAWMGLPEIDYPTDRDG 301 (445)
T ss_pred cccccccccccceeEEEEEECCCCEEecCCC------CceeccCcCceeeeeEECC-CCCEEEEEeCCCCccCCCCccCC
Confidence 11356999999988889987643 2579999 89999999986 69999999999998877777899
Q ss_pred ccceeeeeEEEeecceEEEechhhHHHHHhhcccc
Q 012546 416 WASVQVQFLNLENANFIFFLHIYLTKQVHNFFYFV 450 (461)
Q Consensus 416 Wag~lslPR~L~~~~~~~~~~~~p~~ev~~l~~~~ 450 (461)
|+|+|||||+|+++.. +|.++|++||++||...
T Consensus 302 W~g~lslpR~l~l~~g--~L~~~Pv~el~~lr~~~ 334 (445)
T TIGR01322 302 WAHCMTLPRELTLKDG--KLVQTPLRELKALRTEE 334 (445)
T ss_pred cccccccCEEEEEeCC--eEEEEEhHHHHHHhcCc
Confidence 9999999999999832 36679999999999644
No 5
>smart00640 Glyco_32 Glycosyl hydrolases family 32.
Probab=100.00 E-value=3.7e-73 Score=597.49 Aligned_cols=306 Identities=50% Similarity=0.934 Sum_probs=256.5
Q ss_pred eeecCCCcccCCccceEECCEEEEEEEeCCCCCCCCCcEEEEEEecCCcCcccCceecCCCCcccCCCeEeeeEEEccCC
Q 012546 122 HFQPEKNWMNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMVPDQWYDINGVWTGSATILPDG 201 (461)
Q Consensus 122 Hf~P~~gwmNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~Pd~~~D~~Gv~SGSavv~~dG 201 (461)
||+|+.||||||||++|++|+|||||||+|.++.||+++||||+|+|||||+++|+||.|+.+||..|||||||++ .+|
T Consensus 1 H~~p~~gw~NDPnGl~~~~G~yHlFyq~~p~~~~~g~~~Wgha~S~Dlv~W~~~~~aL~P~~~~d~~g~~sGsav~-~~~ 79 (437)
T smart00640 1 HFQPPKGWMNDPNGLIYYKGKYHLFYQYNPFGPVWGNIHWGHAVSKDLVHWTHLPVALAPDEWYDSNGVFSGSAVI-DPG 79 (437)
T ss_pred CCCCCcCccCCCCeeeEECCEEEEEEecCCCCCCCCCeEEEEEEcCCcceeeecCcccCCCCcCCCCcEEEEEEEE-CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986 577
Q ss_pred cEEEEEcccCCC------ccce-EEEEEecCCCCCCcceEEEcCCCceecCCCCCCCCCCCCCeeEeecCCCcEEEEEee
Q 012546 202 QIVMLYTGSTDK------SVQV-QNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGS 274 (461)
Q Consensus 202 ~~~~~YTG~~~~------~~q~-q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP~V~w~~~dG~w~MviGa 274 (461)
+++|||||.... ..+. |+.|.++|+ ++|+|+++|||+.++++....+||||+|+|. ++|+|+|++|+
T Consensus 80 ~~~~~YTg~~~~~~~~~~~~~~~~~~ass~d~-----~~w~k~~~~Pvi~~~p~~~~~~fRDP~Vf~~-~~~~~~m~~g~ 153 (437)
T smart00640 80 NLSLLYTGNVAIDTNVQVQRQAQQLAASDDLG-----GTWTKYPGNPVLVPPPGIGTEHFRDPKVFWY-DGDKWYMVIGA 153 (437)
T ss_pred ceEEEEcCCcccccccCcccEEEEEEEECCCC-----CeeEECCCCcEEeCCCCCCCCCcCCCCccEE-CCCEEEEEEEE
Confidence 799999997421 1233 355555554 8999998899999777766789999999775 44799999998
Q ss_pred ec-CCceEEEEEEeCCCCCCEEcccccccC-CCC-ceeeeeeEEEecccCcccccccCCCCCeEEEEeeeeCCCcceEEE
Q 012546 275 KI-GKTGISLVYQTTDFKTYELLDEYLHAV-PGT-GMWECVDFYPVAINGSVGLDTSATGPGIKHVLKASLDDTKVDHYA 351 (461)
Q Consensus 275 ~~-~~~G~v~lY~S~Dl~~W~~~~~l~~~~-~~~-gmwECPdlf~l~~~~~~~l~~s~~G~~~k~vl~~S~~~~~~~~Y~ 351 (461)
+. ++.|++++|+|+||++|++.++++... ... +||||||||+|++++ .+.||||++|..+....+|.
T Consensus 154 ~~~~~~G~i~ly~S~Dl~~W~~~~~~~~~~~~~~g~~wECPdlf~l~~~~----------~~~~~vLi~s~~g~~~~~y~ 223 (437)
T smart00640 154 SDEDKTGIALLYRSTDLKNWTLLGELLHSGVGDTGGMWECPDLFPLPGDG----------DTSKHVLKVSPQGGSGNYYF 223 (437)
T ss_pred EecCCCeEEEEEECCCcccCeECCcccccCCCCccceEECCcEEEeCCCC----------CceeEEEEECcCCCCccEEE
Confidence 74 567999999999999999999987542 333 599999999997643 23699999998766678999
Q ss_pred EeeecCCCCcccCCCCCcccCccceeccC-CCcccceeecCCCCcEEEEEEecCCCCCCC-CcCCCccceeeeeEEEeec
Q 012546 352 IGTYNPANDKWTPDNPEEDVGIGLKWDYG-RYYASKSFYDPYKKRRIVWGWINETDTESD-DLEKGWASVQVQFLNLENA 429 (461)
Q Consensus 352 iG~~d~~~~~f~p~~~~~d~g~~~rlD~G-~fYAs~tf~d~~~gRrIl~GWi~e~d~~~~-~~~~GWag~lslPR~L~~~ 429 (461)
+|.++++ .+|+|+... +...+.++|+| +|||+|||.++..+||||||||++++.... ....||+|+|||||+|++.
T Consensus 224 ~G~~~g~-~~f~~~~~~-~~~~~~~lD~G~dfYA~qt~~~~~~~r~i~~gW~~~~~~~~~~~p~~~W~g~~tlPRel~l~ 301 (437)
T smart00640 224 VGYFDGS-DQFTPDDPE-DVGIGLRLDYGFDFYASQTFYDPDGNRRILIGWMGEWDSYADDVPTKGWAGALSLPRELTLD 301 (437)
T ss_pred EEEEcCc-eeEeECCcc-ccCccceEecCCCceeeeeeecCCCCcEEEEEecCCCccccccCCCCCccccceeCeEEEEE
Confidence 9999863 479887653 22334689999 999999999975569999999999974322 2338999999999999982
Q ss_pred ---ceEEEechhhHHHHHhhccc
Q 012546 430 ---NFIFFLHIYLTKQVHNFFYF 449 (461)
Q Consensus 430 ---~~~~~~~~~p~~ev~~l~~~ 449 (461)
++ |.++|++||.+||..
T Consensus 302 ~~~g~---L~~~Pv~el~~lr~~ 321 (437)
T smart00640 302 KTGGK---LLQWPVEELESLRNV 321 (437)
T ss_pred ecCCE---EEEeecHHHHhhhCc
Confidence 55 667999999999943
No 6
>cd08996 GH32_B_Fructosidase Glycosyl hydrolase family 32, beta-fructosidases. Glycosyl hydrolase family GH32 cleaves sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). This family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catal
Probab=100.00 E-value=4e-67 Score=522.17 Aligned_cols=286 Identities=40% Similarity=0.728 Sum_probs=239.6
Q ss_pred CcccCCccceEECCEEEEEEEeCCCCCCCCCcEEEEEEecCCcCcccCceecCCCCcccCCCeEeeeEEEccCCcEEEEE
Q 012546 128 NWMNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMVPDQWYDINGVWTGSATILPDGQIVMLY 207 (461)
Q Consensus 128 gwmNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~Pd~~~D~~Gv~SGSavv~~dG~~~~~Y 207 (461)
||||||||++|++|+||||||++|.+..||+++||||+|+|||||+++++||.|+..+|..|||||||+++.+|+++|||
T Consensus 1 gw~nDPng~~~~~G~yhlfyq~~p~~~~~~~~~wgha~S~Dlv~W~~~~~al~p~~~~d~~g~~sGsav~~~~g~~~~~Y 80 (298)
T cd08996 1 GWMNDPNGLVYFNGKYHLFYQYNPFGPVWGNMHWGHATSKDLVHWEHLPVALAPDDPYDSGGCFSGSAVVDDNGKLVLFY 80 (298)
T ss_pred CCcccCCeeeEECCEEEEEEcCCCCCCCCCCcEEEEEEecCccceeECCcccCCCCcccCCeEEeCeEEEcCCCcEEEEE
Confidence 89999999999999999999999999999999999999999999999999999988899999999999875559999999
Q ss_pred cccCC---CccceEEEEEecCCCCCCcceEEEcCCCceecCCCCCCCCCCCCCeeEeecCCCcEEEEEeeec-CCceEEE
Q 012546 208 TGSTD---KSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKI-GKTGISL 283 (461)
Q Consensus 208 TG~~~---~~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP~V~w~~~dG~w~MviGa~~-~~~G~v~ 283 (461)
||... ...+.|++|+|+|. +++|+|...+|++.+ +.....+||||+|++. +|+|+|++|++. +..|+++
T Consensus 81 Tg~~~~~~~~~~~~~lA~S~dd----g~~w~k~~~~~~~~~-~~~~~~~~RDP~V~~~--~g~~~m~~g~~~~~~~~~i~ 153 (298)
T cd08996 81 TGNVKLDGGRRQTQCLAYSTDD----GRTFTKYEGNPVIPP-PDGYTTHFRDPKVFWH--DGKWYMVLGAGTEDGTGRIL 153 (298)
T ss_pred eceeCCCCCceEEEEEEEEcCC----CCEEEECCCCceEcC-CCCCCCcccCCeEEeE--CCEEEEEEEEEecCCCcEEE
Confidence 99864 45789999999853 389999988888863 3345679999999653 599999999874 3568999
Q ss_pred EEEeCCCCCCEEcccccc-cCCCCceeeeeeEEEecccCcccccccCCCCCeEEEEeeeeCCC------cceEEEEeeec
Q 012546 284 VYQTTDFKTYELLDEYLH-AVPGTGMWECVDFYPVAINGSVGLDTSATGPGIKHVLKASLDDT------KVDHYAIGTYN 356 (461)
Q Consensus 284 lY~S~Dl~~W~~~~~l~~-~~~~~gmwECPdlf~l~~~~~~~l~~s~~G~~~k~vl~~S~~~~------~~~~Y~iG~~d 356 (461)
+|+|+||++|++.+.+.. .....+|||||++|++.. +.||||..|.... ...+|++|++|
T Consensus 154 ly~S~Dl~~W~~~~~~~~~~~~~~~~~EcP~l~~l~~-------------~~k~vL~~s~~~~~~~~~~~~~~y~~G~~~ 220 (298)
T cd08996 154 LYRSDDLKNWEYLGELLTSLGDFGYMWECPDLFPLDV-------------EGKWVLIFSPQGLEPEGNGSGTGYLVGDFD 220 (298)
T ss_pred EEECCCCCCCEEcceecccCCCccceEeCCcEEEECC-------------CCeEEEEECCCCCCCCCCccceEEEEEEEE
Confidence 999999999999988742 222335999999999973 1278887776543 35689999999
Q ss_pred CCCCcccCCCCCcccCccceeccC-CCcccceeecCCCCcEEEEEEecCCCCCCCCcCCCccceeeeeEEEeecceEEEe
Q 012546 357 PANDKWTPDNPEEDVGIGLKWDYG-RYYASKSFYDPYKKRRIVWGWINETDTESDDLEKGWASVQVQFLNLENANFIFFL 435 (461)
Q Consensus 357 ~~~~~f~p~~~~~d~g~~~rlD~G-~fYAs~tf~d~~~gRrIl~GWi~e~d~~~~~~~~GWag~lslPR~L~~~~~~~~~ 435 (461)
.. .|+++. ....++|+| +|||+|||.++ ++|||+||||++++........||+|+|||||+|++...- +|
T Consensus 221 ~~--~~~~~~-----~~~~~lD~G~dfYA~q~~~~~-~~r~i~~gW~~~~~~~~~~~~~~w~g~ls~pr~l~l~~~~-~l 291 (298)
T cd08996 221 GT--TFTFDH-----TEFGELDYGFDFYAPQTFVDP-DGRRILIGWMGNWDYEYPTPEDGWAGCLTLPRELSLKDGG-RL 291 (298)
T ss_pred CC--CCeEec-----CCceEecCCCCeEeCceeeCC-CCCEEEEEEecCCCcCCCCCCCCceeeeEeCEEEEEccCC-EE
Confidence 76 555431 113689999 99999999997 6999999999999988888899999999999999998321 45
Q ss_pred chhhHHH
Q 012546 436 HIYLTKQ 442 (461)
Q Consensus 436 ~~~p~~e 442 (461)
.++|++|
T Consensus 292 ~~~P~~e 298 (298)
T cd08996 292 YQRPVRE 298 (298)
T ss_pred EEEeCCC
Confidence 5677654
No 7
>cd08995 GH32_Aec43_like Glycosyl hydrolase family 32. This glycosyl hydrolase family 32 (GH32) includes characterized as well as uncharacterized proteins. GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). GH32 family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an a
Probab=100.00 E-value=6.8e-55 Score=431.05 Aligned_cols=263 Identities=24% Similarity=0.415 Sum_probs=215.8
Q ss_pred cCCccceEECCEEEEEEEeCCCCCCC--CCcEEEEEEecCCcCcccCceecCC-CCcccCCCeEeeeEEEccCCcEEEEE
Q 012546 131 NDPNGPLFYKGWYHLFYQYNPDSAVW--GNITWGHAVSADLIHWLYLPIAMVP-DQWYDINGVWTGSATILPDGQIVMLY 207 (461)
Q Consensus 131 NDPnG~~y~~G~YHLFYQ~nP~~~~w--G~~~WGHA~S~DLvhW~~~p~AL~P-d~~~D~~Gv~SGSavv~~dG~~~~~Y 207 (461)
.||. ++|++|+||||||++|.+..| ++++||||+|+||+||+++++||.| +..+|..|||+|||++ .+|+++|||
T Consensus 1 ~d~~-~~~~~G~yhlfyq~~p~~~~~~~~~~~wgha~S~Dlv~W~~~~~al~~~~~~~d~~g~~sgs~~~-~~g~~~l~Y 78 (280)
T cd08995 1 GDPM-PFYDDGTFHIFYLHDPRNGPPEGLRHPWSLLTTKDLVNYEDHGEAIPRGGDEDDDDAIGTGSVIK-GEGTYHAFY 78 (280)
T ss_pred CCcc-ceEECCEEEEEEEcCCCCCCcccCCceEEEEEccCcCccEECcceecCCCCcccccCceEeEEEe-eCCEEEEEE
Confidence 4886 999999999999999999888 8999999999999999999999988 4567889999999976 679999999
Q ss_pred cccCCC--ccceEEEEEecCCCCCCcceEEEcCCCceecCCCCCCCCCCCCCeeEeecCCCcEEEEEeeec-----CCce
Q 012546 208 TGSTDK--SVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKI-----GKTG 280 (461)
Q Consensus 208 TG~~~~--~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP~V~w~~~dG~w~MviGa~~-----~~~G 280 (461)
||.... ..+.|++|+|.|+ ++|+|.+.+||+.+++++...+||||+|+|.+.+|+|+|++|++. +..|
T Consensus 79 Tg~~~~~~~~~~i~~A~S~D~-----~~w~k~~~~pv~~~~~~~~~~~~rDP~Vf~~~~~g~y~m~~g~~~~~~~~~~~g 153 (280)
T cd08995 79 TGHNLDGKPKQVVMHATSDDL-----ITWTKDPEFILIADGEGYEKNDWRDPFVFWNEEEGCYWMLLATRLLDGPYNRRG 153 (280)
T ss_pred EEECCCCCCcEEEEEEECCCC-----CccEECCCCeecCCccccccCCccCCcEEEcCCCCeEEEEEEeccCCCCCCCCe
Confidence 997642 4678999999886 899998878988755566667899999976545799999999874 4678
Q ss_pred EEEEEEeCCCCCCEEcccccccCCCCceeeeeeEEEecccCcccccccCCCCCeEEEEeeeeCC-CcceEEEEeeecCCC
Q 012546 281 ISLVYQTTDFKTYELLDEYLHAVPGTGMWECVDFYPVAINGSVGLDTSATGPGIKHVLKASLDD-TKVDHYAIGTYNPAN 359 (461)
Q Consensus 281 ~v~lY~S~Dl~~W~~~~~l~~~~~~~gmwECPdlf~l~~~~~~~l~~s~~G~~~k~vl~~S~~~-~~~~~Y~iG~~d~~~ 359 (461)
+|.+|+|+||++|++.+++... ....|||||++|++++ ||||..|... .....|++|+. . .
T Consensus 154 ~i~~~~S~Dl~~W~~~~~~~~~-~~~~~~E~P~l~~~~g---------------~~~L~~s~~~~~~~~~Y~~~~~-~-~ 215 (280)
T cd08995 154 CIALFTSKDLKNWEYEEPFYAP-GLYFMPECPDLFKMGD---------------WWYLVYSEFSENRKTHYRVSKS-P-F 215 (280)
T ss_pred EEEEEEeCCcCcceecCceecC-CCcceeecceEEEECC---------------EEEEEEEeccCCCcEEEEEeCC-C-C
Confidence 9999999999999999876543 2335999999999952 7888888653 34567999962 2 3
Q ss_pred CcccCCCCCcccCccceeccC-CCcccceeecCCCCcEEEEEEecCCCCCCCCcCCCccceeeeeEEEee
Q 012546 360 DKWTPDNPEEDVGIGLKWDYG-RYYASKSFYDPYKKRRIVWGWINETDTESDDLEKGWASVQVQFLNLEN 428 (461)
Q Consensus 360 ~~f~p~~~~~d~g~~~rlD~G-~fYAs~tf~d~~~gRrIl~GWi~e~d~~~~~~~~GWag~lslPR~L~~ 428 (461)
+.|..... ..+| | +|||+|||.|+ +||||||||++++.+.++..+||+|+||+||.+..
T Consensus 216 g~~~~~~~-------~~~d-g~dfYA~~~~~~~--~r~i~~gw~~~~~~~~~~~~~~w~~~l~~~~~~~~ 275 (280)
T cd08995 216 GPWRAPDD-------DTFD-GRAFYAAKTASDG--TRRFLFGWVPTKAGNDDDGNWEWGGNLVVHELIQN 275 (280)
T ss_pred CCeEcCCc-------CccC-cccccceeEEEeC--CeEEEEEEecCCCCcccccCCccceEEEeeEEEEC
Confidence 45542211 2378 6 89999999997 89999999999999888889999999996554433
No 8
>cd08979 GH_J Glycosyl hydrolase families 32 and 68, which for the clan GH-J. This glycosyl hydrolase family clan J (according to carbohydrate-active enzymes database (CAZY)) includes family 32 (GH32) and 68 (GH68). The overall sequence homology between the two families is low (<15% identity), but common sequence motifs have been identified. GH32 enzymes are invertases that also include other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named inverta
Probab=100.00 E-value=5e-39 Score=313.47 Aligned_cols=242 Identities=26% Similarity=0.322 Sum_probs=189.8
Q ss_pred CCccceEECCEEEEEEEeCCCCCCCCC-cEEEEEEecCCcCcccCceec--CCCCcccCCCeEeeeEEEccCCcEEEEEc
Q 012546 132 DPNGPLFYKGWYHLFYQYNPDSAVWGN-ITWGHAVSADLIHWLYLPIAM--VPDQWYDINGVWTGSATILPDGQIVMLYT 208 (461)
Q Consensus 132 DPnG~~y~~G~YHLFYQ~nP~~~~wG~-~~WGHA~S~DLvhW~~~p~AL--~Pd~~~D~~Gv~SGSavv~~dG~~~~~YT 208 (461)
||+++. |+||||||++|.+..|+. ..||||+|+||+||++.+.+| .+...+|..+||+|+++...+|+++||||
T Consensus 8 ~~~~~~---g~yhlfy~~~~~~~~~~~~~~~~~a~S~D~~~w~~~~~~l~~~~~~~~~~~~~~~p~v~~~~dg~~~~~Yt 84 (276)
T cd08979 8 NPAVVV---GKYHLFYLAAPRGGGDGNTSRIGAASSDDGTWWTRPPAPLPPGPPGSFDDGGVWTPSVVRDPDGTYRMFYT 84 (276)
T ss_pred CCceEe---eeEEEEEEccCcCcCCCCcceeEEEEcCCCCccEECCcCccCCCCCchhcCCeEcceEEEcCCCeEEEEEe
Confidence 455443 889999999999877654 568999999999999999887 56678899999999998765599999999
Q ss_pred ccCC--CccceEEEEEecCCCCCCcceEEEcCCCcee-----cCCCCCCCCCCCCCeeEeecCCCcEEEEEeeec-CCce
Q 012546 209 GSTD--KSVQVQNLAYPADPSDPLLLDWVKYPGNPVL-----VPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKI-GKTG 280 (461)
Q Consensus 209 G~~~--~~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl-----~~p~g~~~~dfRDP~V~w~~~dG~w~MviGa~~-~~~G 280 (461)
|... ...+.|++|+|+|+ .+|+|.+.++++ ..+......++|||+|++.+.+|+|+|++++.. +..+
T Consensus 85 ~~~~~~~~~~~i~~A~S~D~-----~~w~~~~~~~~~~~~~~~~~~~~~~~~~~dP~v~~~~~~g~y~m~~~~~~~~~~~ 159 (276)
T cd08979 85 GYDRPKGAVQRIGLATSKDL-----IHWTKHGPNPVPRWYESGNPGPWDDHAWRDPAVVRDEEGGGWRMYYGARDADERG 159 (276)
T ss_pred cccCCCCCcceEEEEECCCC-----CceEECCCCcceeeeecCCCCCcccccccccEEEEECCCCEEEEEEEeEccCCCc
Confidence 9863 45688999999986 899998767654 222333456899999966533399999999864 3457
Q ss_pred EEEEEEeCCCCCCEEccccc--ccCCCCceeeeeeEEEecccCcccccccCCCCCeEEEEeeeeCC-CcceEEEEeeecC
Q 012546 281 ISLVYQTTDFKTYELLDEYL--HAVPGTGMWECVDFYPVAINGSVGLDTSATGPGIKHVLKASLDD-TKVDHYAIGTYNP 357 (461)
Q Consensus 281 ~v~lY~S~Dl~~W~~~~~l~--~~~~~~gmwECPdlf~l~~~~~~~l~~s~~G~~~k~vl~~S~~~-~~~~~Y~iG~~d~ 357 (461)
.+.+|+|+|+++|++.+.+. .......+||||++|++++ +|||..+... .....|.+|.++.
T Consensus 160 ~i~~a~S~D~~~W~~~~~~~~~~~~~~~~~~e~P~~~~~~g---------------~~~l~~~~~~~~~~~~y~vg~~~~ 224 (276)
T cd08979 160 AIGLATSPDLIHWTPVPPPPGPRTGYDDGQLEVPQVVKIDG---------------RWYLLYSGRNEDAKTGYRVGTALF 224 (276)
T ss_pred EEEEEECCCCCcceECCCCCCCCCcccCCcCccceEEEECC---------------EEEEEEEecCccCCccEEEEeccc
Confidence 88999999999999988763 2222345999999999852 7888888653 4467899998865
Q ss_pred CCCcccCCCCCcccCccceeccC-CCcccceeecCCCCcEEEEEEecCC
Q 012546 358 ANDKWTPDNPEEDVGIGLKWDYG-RYYASKSFYDPYKKRRIVWGWINET 405 (461)
Q Consensus 358 ~~~~f~p~~~~~d~g~~~rlD~G-~fYAs~tf~d~~~gRrIl~GWi~e~ 405 (461)
. .++|.. ...+|+| +|||+|++.+..++||+++|||+++
T Consensus 225 ~--~~~~~~-------~~~~~~g~~~ya~~~~~~~~~~~~~~~gw~~~~ 264 (276)
T cd08979 225 G--PGRPLT-------LAELLDRTDLYAARPVPDGEGGGVVLEGFVQFG 264 (276)
T ss_pred C--Cccccc-------cccccCCCCceeEEeccccCCCcEEEEEEeecc
Confidence 4 455531 1357888 8999999998656999999999986
No 9
>cd08772 GH43_62_32_68 Glycosyl hydrolase families: GH43, GH62, GH32, GH68. Members of the glycosyl hydrolase families 32, 43, 62 and 68 (GH32, GH43, GH62, GH68) all possess 5-bladed beta-propeller domains and comprise clans F and J, as classified by the carbohydrate-active enzymes database (CAZY). Clan F consists of families GH43 and GH62. GH43 includes beta-xylosidases, beta-xylanases, alpha-L-arabinases, and alpha-L-arabinofuranosidases, using aryl-glycosides as substrates, while family GH62 contains alpha-L-arabinofuranosidases (EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose sidechains from xylans. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Clan J consists of families GH32 and GH68. GH32
Probab=100.00 E-value=2e-36 Score=294.75 Aligned_cols=268 Identities=26% Similarity=0.361 Sum_probs=203.0
Q ss_pred cCCccceEECCEEEEEEEeCCCCCCCCCcEEEEEEecCCcCcccCceecC----CCCcccCCCeEeeeEEEccCCcEEEE
Q 012546 131 NDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMV----PDQWYDINGVWTGSATILPDGQIVML 206 (461)
Q Consensus 131 NDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~----Pd~~~D~~Gv~SGSavv~~dG~~~~~ 206 (461)
|||+ +++++|+||||||++|.+ +++.|+|++|+||+||++++.++. |..+++..++|+|+++...+|+++||
T Consensus 1 ~DP~-i~~~~g~yyl~~~~~~~~---~~~~~~~~~S~Dl~~W~~~~~~~~~~~~~~~~~~~~~~wap~v~~~~~g~~~l~ 76 (286)
T cd08772 1 ADPN-LIKYNGTYYIFFSGDDKN---GNPGIAHATSKDLVNWTDHPVALVWWARRGGPKDSGGIWAPSIVYIENGKFYLY 76 (286)
T ss_pred CCCe-EEEECCEEEEEEEccCCC---CCceEEEEECCCcCcceECCccchhhcccCCCCCCCcEecceEEEcCCCCEEEE
Confidence 7999 999999999999999875 678999999999999999998874 67778889999999987655999999
Q ss_pred EcccCC-CccceEEEEEecCCCCCCcceEEEcCCCceecC-CCCCCCCCCCCCeeEeecCCCcEEEEEeeec-CCceEEE
Q 012546 207 YTGSTD-KSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVP-PRHIGPKDFRDPTTAWAGPDGKWRLTIGSKI-GKTGISL 283 (461)
Q Consensus 207 YTG~~~-~~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~-p~g~~~~dfRDP~V~w~~~dG~w~MviGa~~-~~~G~v~ 283 (461)
||+... ...+.|++|+|+|+. ..|++...+||+.. +......++|||+|++ +++|+|+|++++.. +..+.|.
T Consensus 77 yt~~~~~~~~~~i~~a~s~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~Dp~v~~-d~dG~~y~~~~~~~~~~~~~i~ 151 (286)
T cd08772 77 YTDVSFTKNQQTIGVATAEDGN----GPWTDYIGGPVLPDNPPAADVSNFRDPFVFE-DDDGKWYLVFGSGDHHNFGGIF 151 (286)
T ss_pred EEeecCCCCceeEEEEEcCCCC----CCCccccccccccCCCCccccccccCCeEEE-cCCCCEEEEEccccCCCCCeEE
Confidence 999753 346789999998863 45776555565543 2233456899999954 45699999998763 2356788
Q ss_pred EEEeCCCCCCEEcccc--cccCCCCceeeeeeEEEecccCcccccccCCCCCeEEEEeeeeCC------CcceEEEEeee
Q 012546 284 VYQTTDFKTYELLDEY--LHAVPGTGMWECVDFYPVAINGSVGLDTSATGPGIKHVLKASLDD------TKVDHYAIGTY 355 (461)
Q Consensus 284 lY~S~Dl~~W~~~~~l--~~~~~~~gmwECPdlf~l~~~~~~~l~~s~~G~~~k~vl~~S~~~------~~~~~Y~iG~~ 355 (461)
+++|+|+.+|+..+.. .......+++|||++|++.+ +++|..|... .....|++++.
T Consensus 152 ~~~s~d~~~w~~~~~~~~~~~~~~~~~~E~P~~~~~~g---------------~~yL~~s~~~~~~~~~~y~~~~~~~~~ 216 (286)
T cd08772 152 LYESDDDTTWKKGSAELLISEGEGGKQIEGPGLLKKNG---------------KYYLFYSINGTGRVDSTYSIGYARSES 216 (286)
T ss_pred EEEcCCCCCcccccceeeEeeccCCCceeccEEEEECC---------------EEEEEEEcCCCcCCCCCcceEEEEccC
Confidence 9999999999987764 22223446999999999852 6777777544 23556777764
Q ss_pred cCCCCcccCCCCCc-ccCccceeccC-CCcccceeecCCCCcEEEEEEecCCCCCCCCcCCCccceeeeeEEE
Q 012546 356 NPANDKWTPDNPEE-DVGIGLKWDYG-RYYASKSFYDPYKKRRIVWGWINETDTESDDLEKGWASVQVQFLNL 426 (461)
Q Consensus 356 d~~~~~f~p~~~~~-d~g~~~rlD~G-~fYAs~tf~d~~~gRrIl~GWi~e~d~~~~~~~~GWag~lslPR~L 426 (461)
+ .+.|++..... -.-.....|.+ .+||+++|.++ ++|++|++|+.+.+.... ...+|+++|+|||++
T Consensus 217 ~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~ 285 (286)
T cd08772 217 D--TGPYVPKSDTSGGLSLTGGNDGGVGPYHAAAFNDA-GGRVVLVYHAYNVQYADA-PTYGWGRSLAIPRLL 285 (286)
T ss_pred C--CCCcccCCCCCCccccccccCCCCCCCccEEEECC-CCCEEEEEEeccCCcccc-ccCCCcccccccccc
Confidence 3 45676543210 00011235556 79999999987 799999999999876444 668999999999986
No 10
>cd08997 GH68 Glycosyl hydrolase family 68, includes levansucrase, beta-fructofuranosidase and inulosucrase. Glycosyl hydrolase family 68 (GH68) consists of frucosyltransferases (FTFs) that include levansucrase (EC 2.4.1.10), beta-fructofuranosidase (EC 3.2.1.26) and inulosucrase (EC 2.4.1.9), all of which use sucrose as their preferential donor substrate. Levansucrase, also known as beta-D-fructofuranosyl transferase, catalyzes the transfer of the sucrose fructosyl moiety to a growing levan chain. Similarly, inulosucrase catalyzes long inulin-type of fructans, and beta-fructofuranosidases create fructooligosaccharides (FOS). However, in the absence of high fructan/sucrose ratio, some GH68 enzymes can also use fructan as donor substrate. GH68 retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catalytic n
Probab=99.94 E-value=2e-25 Score=228.51 Aligned_cols=184 Identities=21% Similarity=0.218 Sum_probs=131.8
Q ss_pred cCCccc-eEECCEEEEEEEeCCCC----CCCCCcEEEEEEecCCcCcccCceecCCCCcccCCCeEeeeEEEccCCcEEE
Q 012546 131 NDPNGP-LFYKGWYHLFYQYNPDS----AVWGNITWGHAVSADLIHWLYLPIAMVPDQWYDINGVWTGSATILPDGQIVM 205 (461)
Q Consensus 131 NDPnG~-~y~~G~YHLFYQ~nP~~----~~wG~~~WGHA~S~DLvhW~~~p~AL~Pd~~~D~~Gv~SGSavv~~dG~~~~ 205 (461)
-|..|- +-++|+.-+|+...|.. +.|+.++|||++|+||+||++.+. |.|+.++|..|||||||++..||+++|
T Consensus 8 ~d~~g~~~~~~G~~~vfaL~a~~~~~~~~rh~~~~wgh~~S~dlv~W~~~~~-l~p~~~~d~~g~wSGsa~~~~dg~~~l 86 (349)
T cd08997 8 QDRDGEVASYNGYEVIFALTADRNLDPDDRHGDARIGYFYSRAGGNWIDGGK-VFPDGLSPGSREWSGSATLDDDGTVQL 86 (349)
T ss_pred ECCCCCEEEECCEEEEEEEecCCCCCCCCCcCceEEEEEEeCCCCcccCCCc-cCCCCcccCCCeEcceEEEeCCCeEEE
Confidence 355563 34688755899876654 357899999999999999999554 668899999999999998766799999
Q ss_pred EEcccCC----CccceEEEEEecCCCCCCcceEEEcC--CCceecCC--------------CCCCCCCCCCCeeEeecCC
Q 012546 206 LYTGSTD----KSVQVQNLAYPADPSDPLLLDWVKYP--GNPVLVPP--------------RHIGPKDFRDPTTAWAGPD 265 (461)
Q Consensus 206 ~YTG~~~----~~~q~q~lA~S~D~~d~lL~~W~K~~--~nPVl~~p--------------~g~~~~dfRDP~V~w~~~d 265 (461)
||||+.+ .....|++|.+.+.. +..|.+.. ..+++.++ +.-...+||||+|+..+++
T Consensus 87 fYTg~~~~~~~~~~~~Q~ia~a~~~~---~~v~~~~~~~~~~lf~~Dg~~Yqt~~q~~~~~~~~~~~~fRDP~vf~d~~~ 163 (349)
T cd08997 87 FYTAVGRKGEPQPTFTQRLALARGTL---SVVNLSGFEDHHELFEPDGDLYQTDQQYEGTGAQGDIKAFRDPFVFEDPET 163 (349)
T ss_pred EEeccccCCCCCCCceEEEEEEECCC---cceEecccCccceeeeCCCceEEeccccccccccCccCcccCCEEEecCCC
Confidence 9999853 234667777765431 22343321 12344321 1112568999999543337
Q ss_pred CcEEEEEeeecC-C---------------------------ceEEEEE--EeCCCCCCEEcccccccCCCCceeeeeeEE
Q 012546 266 GKWRLTIGSKIG-K---------------------------TGISLVY--QTTDFKTYELLDEYLHAVPGTGMWECVDFY 315 (461)
Q Consensus 266 G~w~MviGa~~~-~---------------------------~G~v~lY--~S~Dl~~W~~~~~l~~~~~~~gmwECPdlf 315 (461)
|+|||+++++.. . .|+|.++ +|+|+.+|++.++|+.+......||||++|
T Consensus 164 G~~ymvfeant~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~G~IGia~~~s~dl~~W~~~~PL~~a~~v~d~~E~P~v~ 243 (349)
T cd08997 164 GKTYLLFEGNTAGERGSQECTEAELGRVLPDTVKPDGASYQNGNVGIAVAKNDDLTEWKLLPPLLEANGVNDELERPHVV 243 (349)
T ss_pred CcEEEEEEeccCCCCCccccccccccccccccccccccccccceEEEEEecCCCCCCcEEcCccccCCCcCCceEcceEE
Confidence 999999998632 2 3666555 677999999999998654334579999999
Q ss_pred Eec
Q 012546 316 PVA 318 (461)
Q Consensus 316 ~l~ 318 (461)
+++
T Consensus 244 ~~~ 246 (349)
T cd08997 244 FHN 246 (349)
T ss_pred EEC
Confidence 996
No 11
>cd08994 GH43_like_2 Glycosyl hydrolase 43-like family consists of hypothetical proteins. This subfamily mostly contains uncharacterized proteins similar to glycosyl hydrolase family 43 (GH43) which includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, f
Probab=99.89 E-value=3.1e-22 Score=199.10 Aligned_cols=189 Identities=19% Similarity=0.262 Sum_probs=140.1
Q ss_pred eeeecCCCcccCCccceEE-CCEEEEEEEeCCCCCC---C-CCcEEEEEEecCCc-CcccCceecCCC--CcccCCCeEe
Q 012546 121 FHFQPEKNWMNDPNGPLFY-KGWYHLFYQYNPDSAV---W-GNITWGHAVSADLI-HWLYLPIAMVPD--QWYDINGVWT 192 (461)
Q Consensus 121 fHf~P~~gwmNDPnG~~y~-~G~YHLFYQ~nP~~~~---w-G~~~WGHA~S~DLv-hW~~~p~AL~Pd--~~~D~~Gv~S 192 (461)
-.|..+..++-+|. ++.. +|+||||||..|.+.. | ....||||+|+|+. +|+..+++|.|+ ..||..++++
T Consensus 4 ~~~~~~~~~~w~~~-vi~~~~g~y~lfy~~~~~~~~~~~~~~~~~i~~A~S~~~~g~w~~~g~vl~~~~~~~wd~~~~~~ 82 (291)
T cd08994 4 SGLEDEDYSVWGGS-IIKGPDGKYHLFASRWPEGLGFHGWLPYSEIVHAVSDTPEGPYTFQEVVLPGRGGGYWDARTTHN 82 (291)
T ss_pred ceeeeCCeEEEecc-eEECCCCcEEEEEEEccCCCCCCcccccceEEEEEcCCCCCCcEEeeeEcCCCCCCcccCCCccC
Confidence 46778888999997 6665 5899999999887643 2 23569999999987 899999999887 4689999999
Q ss_pred eeEEEccCCcEEEEEcccCC-------CccceEEEEEecCCCCCCcceEEEcCCCceecCCC------------------
Q 012546 193 GSATILPDGQIVMLYTGSTD-------KSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPR------------------ 247 (461)
Q Consensus 193 GSavv~~dG~~~~~YTG~~~-------~~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~------------------ 247 (461)
++++. .+|+++||||+... ...+.+++|++.+. +..|++. .+||+.+.+
T Consensus 83 P~vi~-~~g~yyl~Y~~~~~~~~~~~~~~~~~ig~a~s~~~----~g~w~~~-~~pvl~~~~~~~~~~~~~~p~v~~~~~ 156 (291)
T cd08994 83 PTIKR-FDGKYYLYYIGNTDPGPRPGHRNNQRIGVAVSDSL----DGPWKRS-DQPILEPRPGGWDNLITSNPAVTRRPD 156 (291)
T ss_pred CeEEE-ECCEEEEEEEcccCCcccccCCCCceEEEEEeCCC----CCCcEEC-CCceecCCCCccccccccCCCeEEeCC
Confidence 99975 57999999999753 23466778887763 1356654 344442200
Q ss_pred -------------------------------------------CCCCCCCCCCeeEeecCCCcEEEEEeeec----CCce
Q 012546 248 -------------------------------------------HIGPKDFRDPTTAWAGPDGKWRLTIGSKI----GKTG 280 (461)
Q Consensus 248 -------------------------------------------g~~~~dfRDP~V~w~~~dG~w~MviGa~~----~~~G 280 (461)
......+|||+| |+ .+|+|+|++++.. +..+
T Consensus 157 g~~~m~y~g~~~~~~~~~~~~gla~s~d~~g~~~~~~~~~v~~~~~~~~~~dP~V-~~-~~g~yym~~~~~~~~~~~~~~ 234 (291)
T cd08994 157 GSYLLVYKGGTYNPTKGNRKYGVAIADSPTGPYTKVSGPPFIEPGDNGNTEDPFV-WY-DKGQFHMIVKDMLGYVTGEKG 234 (291)
T ss_pred CCEEEEEeccccCCCCCcEEEEEEEeCCCCCCCEECCCCccccCCCCCceeCceE-EE-eCCEEEEEEeecccCcCCCCc
Confidence 001235799999 65 5699999999874 2467
Q ss_pred EEEEEEeCCCCCCEEcccccc----c-CC----CCceeeeeeEE-Eec
Q 012546 281 ISLVYQTTDFKTYELLDEYLH----A-VP----GTGMWECVDFY-PVA 318 (461)
Q Consensus 281 ~v~lY~S~Dl~~W~~~~~l~~----~-~~----~~gmwECPdlf-~l~ 318 (461)
.+.+|+|+|+++|++.+.+.. . .. ...|||||+++ ...
T Consensus 235 ~i~~a~S~Dg~~W~~~~~~~~~~~~~~~~~~~~~~~~~erP~v~~~~~ 282 (291)
T cd08994 235 GGAYFRSKDGIHWKLAPGLAYSTTVEWTDGTTEDWGRLERPQVLLDED 282 (291)
T ss_pred eEEEEECCCCCCceecCcceeeeeEEcCCCcccccccccCCEEEEcCC
Confidence 899999999999999987741 1 11 23599999999 664
No 12
>cd08984 GH43_5 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.84 E-value=8.2e-20 Score=182.94 Aligned_cols=185 Identities=21% Similarity=0.259 Sum_probs=134.5
Q ss_pred CCCccc-ccccccceeeeecCCCc----ccCCccceEECCEEEEEEEeCCCCC--CCCCcEEEEEEecCCcCcccCceec
Q 012546 107 YNWTNA-MFTWQRTSFHFQPEKNW----MNDPNGPLFYKGWYHLFYQYNPDSA--VWGNITWGHAVSADLIHWLYLPIAM 179 (461)
Q Consensus 107 ~~~~~~-~~~w~Rp~fHf~P~~gw----mNDPnG~~y~~G~YHLFYQ~nP~~~--~wG~~~WGHA~S~DLvhW~~~p~AL 179 (461)
+..|.. +..|++...-+.+...| +.+|. +++++|+||||||++|... .++.+.|+||+|+||++|+..+++.
T Consensus 51 ~a~S~D~l~~W~~~g~~~~~~~~~~~~~~WAP~-v~~~~G~y~myys~~~~~~~~~~~~~~i~~a~S~Dl~~w~~~~~~~ 129 (294)
T cd08984 51 VASSKDGGATWTYRGTADGLEFECGRNTFWAPE-VVWHGGVYHMYVTYIPGVPPDWGGPRRIVHYTSPNLWDWTFVGRVD 129 (294)
T ss_pred EEEeCCCCCCCEEeeeeccCCCCCcccceeCce-EEEECCEEEEEEEecCCCCcccCCCcEEEEEECCCcCcceECCccc
Confidence 334555 66776655333332222 35676 7889999999999998753 3357899999999999999988653
Q ss_pred CCCCcccCCCeEeeeEEEccCCcEEEEEcccCCCccceEEEEEecCCCCCCcceEEEcCCCceecCCCCCCCCCCCCCee
Q 012546 180 VPDQWYDINGVWTGSATILPDGQIVMLYTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTT 259 (461)
Q Consensus 180 ~Pd~~~D~~Gv~SGSavv~~dG~~~~~YTG~~~~~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP~V 259 (461)
. +..++++++++.+.+|+++|+||+... .+.+++|.+.|+ .+|++. .+++.. ...++|+|
T Consensus 130 ~-----~~~~~iD~~vf~~~dg~~yl~y~~~~~--~~~~~~a~s~D~-----~~w~~~--~~~i~~------~~~EgP~v 189 (294)
T cd08984 130 L-----DSDRVIDACVFKLPDGRWRMWYKDERR--GSTTYAADSEDL-----YHWTVE--GPVLGD------RPHEGPNV 189 (294)
T ss_pred c-----CCCCcEEeEEEEeCCCEEEEEEECCCC--CeEEEEEECCCC-----CEEEeC--CccccC------CCCCCCCe
Confidence 2 245889999987667999999998643 245689999886 799985 355542 23478999
Q ss_pred EeecCCCcEEEEEeeecCCceEEEEEEeCCCCCCEEcccccccCC---C-CceeeeeeEEEec
Q 012546 260 AWAGPDGKWRLTIGSKIGKTGISLVYQTTDFKTYELLDEYLHAVP---G-TGMWECVDFYPVA 318 (461)
Q Consensus 260 ~w~~~dG~w~MviGa~~~~~G~v~lY~S~Dl~~W~~~~~l~~~~~---~-~gmwECPdlf~l~ 318 (461)
|+ .+|+|+|+++. ..| +.+|+|+|+.+|++.+.++.... . ..+++||+++...
T Consensus 190 -~k-~~g~yym~~~~---~~g-~~~~~S~D~~~W~~~~~~l~~~~~~~~~~~~~~H~~i~~~~ 246 (294)
T cd08984 190 -FR-WKGYYWMIIDE---WKG-LGVYRSKDAENWERQGGILLKPGTRPDDGAKGRHADVVVTG 246 (294)
T ss_pred -eE-ECCEEEEEEcC---Cce-EEEEECCChhhcEECCeeeccCCCCccccccccCCcEEEeC
Confidence 44 57999999853 235 66999999999999998775321 1 2378999999764
No 13
>cd08993 GH43_DUF377 Glycosyl hydrolase family 43 containing a domain of unknown function. This subfamily has sequences similar to the glycosyl hydrolase family 43 (GH43) and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=99.84 E-value=1.1e-19 Score=179.40 Aligned_cols=161 Identities=19% Similarity=0.230 Sum_probs=123.3
Q ss_pred CCccceEECCEEEEEEEeCCCCCCCCCcEEEEEEecCCcCcccCc-eecCC--CCcccCCCeEeeeEEEccCCcEEEEEc
Q 012546 132 DPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLP-IAMVP--DQWYDINGVWTGSATILPDGQIVMLYT 208 (461)
Q Consensus 132 DPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p-~AL~P--d~~~D~~Gv~SGSavv~~dG~~~~~YT 208 (461)
|| |+++++|+||||||.++.. +.++||||+|+|++||+..+ +.|.| +..++..+|++++++. .+|+++|+||
T Consensus 2 nP-~v~~~~G~y~l~y~~~~~~---~~~~ig~A~S~Dg~~~~~~~~~~i~p~~~~~~~~~gv~dP~v~~-~~g~y~m~Yt 76 (268)
T cd08993 2 NP-AVVYDNGEFYLLYRAAGND---GVIRLGLARSRDGLHFEIDPDPPVWPPPEDGFEEGGVEDPRIVK-IDDTYYITYA 76 (268)
T ss_pred cC-eEEEECCEEEEEEEEECCC---CceEEEEEEECCCceEEECCcceEcCCCCCcccccCccCcEEEE-ECCEEEEEEE
Confidence 67 6899999999999987643 56899999999999999876 45666 5577889999999975 6999999999
Q ss_pred ccCC-CccceEEEEEecCCCCCCcceEEEcCCCceecCCCCCCCCCCCCCeeEeecCCCcEEEEEeeec---CCceEEEE
Q 012546 209 GSTD-KSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKI---GKTGISLV 284 (461)
Q Consensus 209 G~~~-~~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP~V~w~~~dG~w~MviGa~~---~~~G~v~l 284 (461)
+... ...+.+++|.|+|+ .+|+|.. . ++. + ..||++++..+.+|+|+|++.... +..+.+.+
T Consensus 77 a~~~~~~~~~i~lA~S~D~-----~~W~~~~-~-~~~-~------~~~d~~~~p~~~~g~y~m~~r~~~~~~~~~~~I~l 142 (268)
T cd08993 77 ARPNAPNGTRIGLATTKDF-----ITFERLG-T-SLV-P------NNRDGILFPEKINGKYVMLHRPFEYGGTSPPDMWL 142 (268)
T ss_pred ccCCCCCCcEEEEEEeCCc-----ceEEEec-c-cCC-C------CCCCEEEeeEEECCEEEEEEccccCCCCCCCcEEE
Confidence 9763 34567899999986 8999973 2 111 1 347888843235899999986432 34678899
Q ss_pred EEeCCCCCCEEcccccccCCCCceeeeee
Q 012546 285 YQTTDFKTYELLDEYLHAVPGTGMWECVD 313 (461)
Q Consensus 285 Y~S~Dl~~W~~~~~l~~~~~~~gmwECPd 313 (461)
++|+|+.+|+..+.++.. ..+.||+-.
T Consensus 143 A~S~Dl~~W~~~~~~~~~--~~~~wd~~~ 169 (268)
T cd08993 143 SFSPDLVHWGNHRFVLSP--RPNHWEQLK 169 (268)
T ss_pred EECCCcCccCCCeEEecC--CCCceeece
Confidence 999999999988776643 223577654
No 14
>cd09004 GH43_bXyl Glycosyl hydrolase family 43, includes mostly 1,4-beta-xylanases. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=99.83 E-value=3.3e-19 Score=176.23 Aligned_cols=192 Identities=15% Similarity=0.170 Sum_probs=137.3
Q ss_pred CCcccCCccceEECCEEEEEEEeCCCCCCCCCcEEEEEEecCCcCcccCceecCCC-CcccCCCeEeeeEEEccCCcEEE
Q 012546 127 KNWMNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMVPD-QWYDINGVWTGSATILPDGQIVM 205 (461)
Q Consensus 127 ~gwmNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~Pd-~~~D~~Gv~SGSavv~~dG~~~~ 205 (461)
.||++||+ +++++|+||||++....+. ....|.+++|+||+||+.++.+|.+. ..++..++|+++++. .+|+++|
T Consensus 5 ~g~~~DP~-i~~~~g~yY~~~t~~~~~~--~~~~~~~~~S~Dl~~W~~~g~~l~~~~~~~~~~~~wAP~v~~-~~g~yy~ 80 (275)
T cd09004 5 PGWYADPE-IRIFGGTYYIYPTSDGAGG--EQTPFDVFSSKDLVNWTKEGIILDMADVSWANRAAWAPSVIE-RNGKYYF 80 (275)
T ss_pred CCCCCCCC-eEEECCEEEEEEeccCCCC--CeeEEEEEECCCCCCceECcccccccCCcccCCCcCCCeEEE-ECCEEEE
Confidence 46899998 5788999999998765322 24679999999999999999988764 356778999999975 6899999
Q ss_pred EEcccCCCccceEEEEEecCCCCCCcceEEEcCCCceecCCCCCCCCCCCCCeeEeecCCCcEEEEEeeecCCceEEEEE
Q 012546 206 LYTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKIGKTGISLVY 285 (461)
Q Consensus 206 ~YTG~~~~~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP~V~w~~~dG~w~MviGa~~~~~G~v~lY 285 (461)
|||+. +.+++|+|+|+. ..|++..++|++.+.. .....+||.|+ .+.+|+|+|++++. .++.++-
T Consensus 81 yys~~-----~~i~va~s~~p~----gp~~~~~~~p~~~~~~--~~~~~iDp~vf-~d~dG~~yl~~~~~---~~~~i~~ 145 (275)
T cd09004 81 YFSAN-----GGIGVAVADSPL----GPFKDALGKPLIDKFT--FGAQPIDPDVF-IDDDGQAYLYWGGW---GHCNVAK 145 (275)
T ss_pred EEEcC-----CcEEEEEeCCCC----CCCCCCCCCccccCCc--CCCCccCCCeE-ECCCCCEEEEEcCc---CCEEEEE
Confidence 99986 457899998763 4688754678876432 23578999995 45789999999863 2222233
Q ss_pred EeCCCCCCEEcccccccCCCCceeeeeeEEEecccCcccccccCCCCCeEEEEeeeeCCCcceEEEEe
Q 012546 286 QTTDFKTYELLDEYLHAVPGTGMWECVDFYPVAINGSVGLDTSATGPGIKHVLKASLDDTKVDHYAIG 353 (461)
Q Consensus 286 ~S~Dl~~W~~~~~l~~~~~~~gmwECPdlf~l~~~~~~~l~~s~~G~~~k~vl~~S~~~~~~~~Y~iG 353 (461)
-|.|+.+|+.....+ .....++.|||.+|+..+ +++|..|........|.+|
T Consensus 146 l~~d~~~~~~~~~~~-~~~~~~~~EgP~i~k~~G---------------~yyl~ys~~~~~~~~Y~~~ 197 (275)
T cd09004 146 LNEDMISFDGERDGS-EITPKNYFEGPFMFKRNG---------------IYYLMWSEGGWTDPDYHVA 197 (275)
T ss_pred ECCCcccccCcceee-eccCCCceecceEEEECC---------------EEEEEEECCCCCCCCceEE
Confidence 478898887543332 112234899999998752 5677776543322234444
No 15
>cd08999 GH43_ABN_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-b
Probab=99.76 E-value=5.9e-17 Score=160.26 Aligned_cols=206 Identities=19% Similarity=0.161 Sum_probs=137.4
Q ss_pred CcccCCccceEECCEEEEEEEeCCCCCCCCCcEEEEEEecCCcCcccCceecCCCCc-ccCCCeEeeeEEEccCCcEEEE
Q 012546 128 NWMNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMVPDQW-YDINGVWTGSATILPDGQIVML 206 (461)
Q Consensus 128 gwmNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~Pd~~-~D~~Gv~SGSavv~~dG~~~~~ 206 (461)
+.+-||. +++++|+|+||+..... ..|++++|+||+||+..+.+|.+... .+..++|.++++. .+|+++|+
T Consensus 6 ~~~~DP~-i~~~~g~yy~~~t~~~~------~~i~~~~S~Dl~~W~~~g~~l~~~~~~~~~~~~waP~v~~-~~g~y~~~ 77 (287)
T cd08999 6 GDFPDPS-VIRVDGTYYAYATNGNG------PNVPIATSTDLVNWTYLGDAFPKLPRWWTGGDFWAPDVSY-VNGKYVLY 77 (287)
T ss_pred CCCCCCe-EEEECCEEEEEEeCCCC------CcEEEEECCCCCCcEECCcccCCCCCcccCCCccCceEEE-ECCEEEEE
Confidence 4668997 78889999999985432 57899999999999999988877654 4567899988865 68999999
Q ss_pred EcccCCC-ccceEEEEEecCCCCCCcceEEEcCCCceecCCCCCCCCCCCCCeeEeecCCCcEEEEEeeecCCce---EE
Q 012546 207 YTGSTDK-SVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKIGKTG---IS 282 (461)
Q Consensus 207 YTG~~~~-~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP~V~w~~~dG~w~MviGa~~~~~G---~v 282 (461)
||+.... ..+.+++|+|+|.. ..|++....++. .+. .....+||.|+ .+++|++||++++.....| .+
T Consensus 78 y~~~~~~~~~~~i~~a~s~~p~----g~~~~~~~~~~~-~~~--~~~~~~Dp~v~-~d~dG~~Yl~~~~~~~~~~~~~~i 149 (287)
T cd08999 78 YSARDKGSGGQCIGVATADSPL----GPFTDHGKPPLC-CPE--GEGGAIDPSFF-TDTDGKRYLVWKSDGNSIGKPTPI 149 (287)
T ss_pred EEeecCCCCCEEEEEEECCCCC----CCCccCCcceEe-cCC--CCCCccCCCeE-ECCCCCEEEEEeccCCCCCCCceE
Confidence 9998642 34567889887753 478876433333 222 23567999995 4468999999986532211 12
Q ss_pred EEE-EeCCCCCCEEccc-ccccC--CCCceeeeeeEEEecccCcccccccCCCCCeEEEEeeeeCCCcce--EEEEeee-
Q 012546 283 LVY-QTTDFKTYELLDE-YLHAV--PGTGMWECVDFYPVAINGSVGLDTSATGPGIKHVLKASLDDTKVD--HYAIGTY- 355 (461)
Q Consensus 283 ~lY-~S~Dl~~W~~~~~-l~~~~--~~~gmwECPdlf~l~~~~~~~l~~s~~G~~~k~vl~~S~~~~~~~--~Y~iG~~- 355 (461)
.+. .|+|+.+|..... ++... ....++|||.+|+..+ +++|..|....... .|.+|-.
T Consensus 150 ~~~~ls~d~~~~~~~~~~i~~~~~~~~~~~~EgP~i~k~~g---------------~yyl~~S~~~~~~~~~~y~i~~~~ 214 (287)
T cd08999 150 YLQELSADGLTLTGEPVRLLRNDEDWEGPLVEAPYLVKRGG---------------YYYLFYSAGGCCSGASTYAVGVAR 214 (287)
T ss_pred EEEEeCCCCccccCCcEeeecccccccCCceEeeEEEEECC---------------EEEEEEEcCCccCCCCCEEEEEEE
Confidence 233 3689888864332 22211 1234899999999842 67777776432221 4555532
Q ss_pred -cCCCCcccC
Q 012546 356 -NPANDKWTP 364 (461)
Q Consensus 356 -d~~~~~f~p 364 (461)
+.-.+.|+.
T Consensus 215 s~~~~Gpw~~ 224 (287)
T cd08999 215 SKSLLGPYVK 224 (287)
T ss_pred eCCCcCCcCC
Confidence 222345653
No 16
>cd08990 GH43_AXH_like Glycosyl hydrolase family 43, includes arabinoxylan arabinofuranohydrolase, beta-xylosidase, endo-1,4-beta-xylanase, alpha-L-arabinofuranosidase. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), endo-alpha-L-arabinanase as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of
Probab=99.71 E-value=6.2e-16 Score=152.94 Aligned_cols=195 Identities=14% Similarity=0.154 Sum_probs=136.9
Q ss_pred CCccceEECCEEEEEEEeCCCCCC---CCCcEEEEEEecCCcCcccCceecCCCC--cccCCCeEeeeEEEccCCcEEEE
Q 012546 132 DPNGPLFYKGWYHLFYQYNPDSAV---WGNITWGHAVSADLIHWLYLPIAMVPDQ--WYDINGVWTGSATILPDGQIVML 206 (461)
Q Consensus 132 DPnG~~y~~G~YHLFYQ~nP~~~~---wG~~~WGHA~S~DLvhW~~~p~AL~Pd~--~~D~~Gv~SGSavv~~dG~~~~~ 206 (461)
||. +++++|+|+||......... .....|..++|+||+||+..+.+|.+.. .++..++|.++++. .+|+++||
T Consensus 2 DP~-~~~~~~~yy~~~t~~~~~~~~~~~~~~~~~v~~S~Dl~~W~~~g~~l~~~~~~~~~~~~~wAP~i~~-~~g~yy~y 79 (274)
T cd08990 2 DPA-AHVFNGRVYIYTSHDEAGGGGDDFCMNDYHVFSSPDLVNWTDHGVILSVTDFPAWAKGQAWAPDVVE-KNGKYYLY 79 (274)
T ss_pred CCC-cEEECCEEEEEeCCCCCCCCCCccccceEEEEECCCCCCcEECcccccCCCCCccccCCcCcCeEEE-ECCEEEEE
Confidence 886 77889999999987644331 2234689999999999999998886543 36788999999875 79999999
Q ss_pred EcccCCCccceEEEEEecCCCCCCcceEEEcCCCceecCCCCCCCCCCCCCeeEeecCCCcEEEEEeeecCCceEEEEEE
Q 012546 207 YTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKIGKTGISLVYQ 286 (461)
Q Consensus 207 YTG~~~~~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP~V~w~~~dG~w~MviGa~~~~~G~v~lY~ 286 (461)
||+......+.+++|+|+|+. ..|++....|++... .......||+++ .+.||++||++++. .++.++--
T Consensus 80 y~~~~~~~~~~igva~s~~p~----Gpw~~~~~~~~~~~~--~~~~~~iDp~vf-~d~dG~~yl~~~~~---~~~~~~~l 149 (274)
T cd08990 80 FPARDKDGGFAIGVAVSDSPA----GPFKDAGGPILITTP--SGGWYSIDPAVF-IDDDGQAYLYWGGG---LGLRVAKL 149 (274)
T ss_pred EEeecCCCceEEEEEEeCCCC----CCCCCCCCccccccC--CCCCCccCCcEE-ECCCCCEEEEECCc---CCEEEEEe
Confidence 999754345667899997753 468876545555421 123567899995 45789999999864 34444556
Q ss_pred eCCCCCCEEccccccc-----CCCCceeeeeeEEEecccCcccccccCCCCCeEEEEeeeeCCCcceEEEEe
Q 012546 287 TTDFKTYELLDEYLHA-----VPGTGMWECVDFYPVAINGSVGLDTSATGPGIKHVLKASLDDTKVDHYAIG 353 (461)
Q Consensus 287 S~Dl~~W~~~~~l~~~-----~~~~gmwECPdlf~l~~~~~~~l~~s~~G~~~k~vl~~S~~~~~~~~Y~iG 353 (461)
|+|+.+|+.....+.. ....+..|+|.+|+..+ +++|..|........|++.
T Consensus 150 ~~d~~~~~~~~~~i~~~~~~~~~~~~~~EgP~i~k~~G---------------~YYl~yS~~~~~~~~~a~s 206 (274)
T cd08990 150 KPDMLSLKGEPVEIVITDGAGDELRRFFEAPWVHKRNG---------------TYYLSYSTGDPEEIAYATS 206 (274)
T ss_pred CccccccCCCcEEEEeccccCCCCCCcccceeEEEECC---------------EEEEEEECCCCcEEEEEEc
Confidence 8899999755443321 11234789999998752 6777777654333445443
No 17
>cd08978 GH_F Glycosyl hydrolase families 43 and 62 form CAZY clan GH-F. This glycosyl hydrolase clan F (according to carbohydrate-active enzymes database (CAZY)) includes family 43 (GH43) and 62 (GH62). GH43 includes enzymes with beta-xylosidase (EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanases (beta-xylanases) and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. GH62 includes enzymes characterized as arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Ma
Probab=99.66 E-value=6.9e-15 Score=142.94 Aligned_cols=201 Identities=22% Similarity=0.188 Sum_probs=131.4
Q ss_pred CCccceEECCEEEEEEEeCCCCCCCCCcEEEEEEecCCcCcccCceecC----CCCcccCCCeEeeeEEEccCCcEEEEE
Q 012546 132 DPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMV----PDQWYDINGVWTGSATILPDGQIVMLY 207 (461)
Q Consensus 132 DPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~----Pd~~~D~~Gv~SGSavv~~dG~~~~~Y 207 (461)
||. ++.++|+|+||+..... ....++.++|+||++|+..+.+|. +....+..++|.++++. .+|+++|+|
T Consensus 2 DP~-v~~~~~~yyl~~t~~~~----~~~~i~i~~S~Dl~~W~~~~~~~~~~~~~~~~~~~~~~waP~v~~-~~g~yyl~y 75 (271)
T cd08978 2 DPY-ILRYNGKYYLYGSTDDA----AGPGVQVWSSKDLVNWRYEGAVFVAWRGRGEAKDSGGLWAPEVIY-YEGKYYLYY 75 (271)
T ss_pred CCc-EEEECCEEEEEEecCCc----CCCcEEEEECCccCCcEECCcccccccccCCcccCCceeCCeEEE-ECCEEEEEE
Confidence 886 78889999999987542 234589999999999999998875 44455678999999975 679999999
Q ss_pred cccCC-CccceEEEEEecCCCCCCcceEEEcCCCceecCCCCCCCCCCCCCeeEeecCCCcEEEEEeeecC--CceEEEE
Q 012546 208 TGSTD-KSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKIG--KTGISLV 284 (461)
Q Consensus 208 TG~~~-~~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP~V~w~~~dG~w~MviGa~~~--~~G~v~l 284 (461)
|+... ...+.+++|+|+|+ ..|.+....+ .+ .......+||.|+. +++|+++|+.++... ..+.+.+
T Consensus 76 ~~~~~~~~~~~i~~a~s~d~-----~g~~~~~~~~---~~-~~~~~~~iDp~vf~-d~dg~~yl~~~~~~~~~~~~~i~~ 145 (271)
T cd08978 76 SVSDFDYNGSGIGVATSEDP-----TGPFEDKVIR---PP-TSNNGNSIDPTVFK-DDDGKYYLYYGSGDPGAGFGGIYI 145 (271)
T ss_pred EcccCCCCcccEEEEECCCC-----CCCccccccC---cC-ccCCCCccCcceEE-cCCCCEEEEEecccCCCCCCcEEE
Confidence 99753 23467889999886 4454432111 11 11234679999954 567999999986532 2456777
Q ss_pred EEeCCCCCCEEcccc-c-ccCCCCceeeeeeEEEecccCcccccccCCCCCeEEEEeeeeCCCcceEEEEee--ecCCCC
Q 012546 285 YQTTDFKTYELLDEY-L-HAVPGTGMWECVDFYPVAINGSVGLDTSATGPGIKHVLKASLDDTKVDHYAIGT--YNPAND 360 (461)
Q Consensus 285 Y~S~Dl~~W~~~~~l-~-~~~~~~gmwECPdlf~l~~~~~~~l~~s~~G~~~k~vl~~S~~~~~~~~Y~iG~--~d~~~~ 360 (461)
.++++...|...... . .......+.|||.+|+..+ +++|..|........|.++- -+...+
T Consensus 146 ~~l~~~~~~~~~~~~~~~~~~~~~~~~EgP~~~k~~g---------------~yyl~ys~~~~~~~~y~~~~~~s~~~~G 210 (271)
T cd08978 146 SELTDDLTKPTGPPVLSASSGNNNAVTEGPTIFKKNG---------------YYYLTYSANGTGDYGYNIGYATSDSIDG 210 (271)
T ss_pred EEECcccccccCCceeeeeeccCCCceEccEEEEECC---------------EEEEEEEeCCCCCCCceEEEEECCCCCC
Confidence 887664443222221 1 1112334899999998752 67777775433223355543 233334
Q ss_pred ccc
Q 012546 361 KWT 363 (461)
Q Consensus 361 ~f~ 363 (461)
.|+
T Consensus 211 p~~ 213 (271)
T cd08978 211 PYV 213 (271)
T ss_pred CcC
Confidence 454
No 18
>cd08991 GH43_bXyl_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=99.62 E-value=3.4e-14 Score=141.55 Aligned_cols=189 Identities=17% Similarity=0.135 Sum_probs=127.1
Q ss_pred CCccceEECCEEEEEEEeCCCCCCCCCcEEEEEEecCCcCcccCceecCCCC-cccCCCeEeeeEEEccCCcEEEEEccc
Q 012546 132 DPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMVPDQ-WYDINGVWTGSATILPDGQIVMLYTGS 210 (461)
Q Consensus 132 DPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~Pd~-~~D~~Gv~SGSavv~~dG~~~~~YTG~ 210 (461)
||. +++++|+|+||+..... ...+..++|+||+||+.++.++.+.. .+...++|.++++. .+|+++|+||+.
T Consensus 2 DP~-v~~~~g~yyl~~t~~~~-----~~~i~~~~S~Dl~~W~~~~~~~~~~~~~~~~~~~waP~v~~-~~g~yyl~ys~~ 74 (294)
T cd08991 2 DPF-VLRYNGKYYAYGTGGAD-----GRGFAVYSSPDLVDWKLHGGALLALDDDWGRRGFWAPEVYY-YNGKFYMYYSAN 74 (294)
T ss_pred CCe-EEEECCEEEEEEeCCCC-----CCeeEEEECCCCCCceECCccccCCCCCccCCcEEccEEEE-ECCEEEEEEEec
Confidence 897 88889999999876532 23478999999999999998877654 36778999999875 689999999987
Q ss_pred CCC-ccceEEEEEecCCCCCCcceEEEcCCCceecCCCCCCCCCCCCCeeEeecCCCcEEEEEeeecCC---ceEEEEEE
Q 012546 211 TDK-SVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKIGK---TGISLVYQ 286 (461)
Q Consensus 211 ~~~-~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP~V~w~~~dG~w~MviGa~~~~---~G~v~lY~ 286 (461)
... ..+.+++|+|+|+. ..|++....++ .. + ...+||.++. +.||+|+|+.+..... .++.++--
T Consensus 75 ~~~~~~~~i~~a~s~~p~----gp~~~~~~~~~-~~--~---~~~iD~~vf~-d~dG~~yl~~~~~~~~~~~~~i~~~~l 143 (294)
T cd08991 75 DRDEKTEHIGVAVSDSPL----GPFRDIKKPPI-DF--E---PKSIDAHPFI-DDDGKPYLYYSRNNYGNRVSDIYGTEL 143 (294)
T ss_pred cCCCCcceEEEEEeCCCC----CCCCcCCCCcc-cC--C---CcccCCceEE-CCCCCEEEEEEecCCCCcccceEEEEE
Confidence 543 45678899998752 46777532222 11 1 3568999954 5679999999864321 24545556
Q ss_pred eCCCCCCEEccc--c--ccc--------------CCCCceeeeeeEEEecccCcccccccCCCCCeEEEEeeeeCCCcce
Q 012546 287 TTDFKTYELLDE--Y--LHA--------------VPGTGMWECVDFYPVAINGSVGLDTSATGPGIKHVLKASLDDTKVD 348 (461)
Q Consensus 287 S~Dl~~W~~~~~--l--~~~--------------~~~~gmwECPdlf~l~~~~~~~l~~s~~G~~~k~vl~~S~~~~~~~ 348 (461)
+.|+.+|.-... . ... .....+.|+|.+++.++ +++|..|.......
T Consensus 144 ~~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~EgP~~~k~~g---------------~yyl~ys~~~~~~~ 208 (294)
T cd08991 144 VDDKLSIKTELVGPPIPVSAPGIDEIFERWRFGEGKDWRTNEGPTVLKHNG---------------RYYLTYSANHYENE 208 (294)
T ss_pred ccceeeeccceeeccccccccccccccccccccccccCceeeCcEEEEECC---------------EEEEEEECCCCCCC
Confidence 788877642111 0 000 01123789999998852 67777775433223
Q ss_pred EEEEe
Q 012546 349 HYAIG 353 (461)
Q Consensus 349 ~Y~iG 353 (461)
.|.+|
T Consensus 209 ~y~~~ 213 (294)
T cd08991 209 DYGVG 213 (294)
T ss_pred CceEE
Confidence 34443
No 19
>cd08998 GH43_ABN_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-b
Probab=99.56 E-value=2.4e-13 Score=135.41 Aligned_cols=169 Identities=20% Similarity=0.159 Sum_probs=114.0
Q ss_pred ccCCccceEECCEEEEEEEeCCCCCCCCCcEEEEEEecCCcCcccCceecCCCC-------cccCCCeEeeeEEEccCCc
Q 012546 130 MNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMVPDQ-------WYDINGVWTGSATILPDGQ 202 (461)
Q Consensus 130 mNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~Pd~-------~~D~~Gv~SGSavv~~dG~ 202 (461)
+.||. +++++|+|+||+... .+++++|+||+||++.+.+|.+.. ..+..++|.++++. .+|+
T Consensus 1 ~~DP~-v~~~~~~yyl~~t~~---------~i~i~~S~Dl~~W~~~g~~~~~~~~~~~~~~~~~~~~~wAP~v~~-~~g~ 69 (288)
T cd08998 1 VHDPS-IIKEGDTYYLFSTGN---------GIAIAKSKDLGNWTYVGSVFPTGPPWWSSIDPGGSGNLWAPDVIY-LNGK 69 (288)
T ss_pred CCCCe-EEEECCEEEEEEcCC---------CeEEEECCCCCCcEECCccccCCCccccccccCCCCCccCCeEEE-ECCE
Confidence 46996 889999999999864 589999999999999998876543 23457899999875 6999
Q ss_pred EEEEEcccCCC-ccceEEEEEecCCCCCCcceEEEcCCCceecCCCCCCCCCCCCCeeEeecCCCcEEEEEeeecCCceE
Q 012546 203 IVMLYTGSTDK-SVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKIGKTGI 281 (461)
Q Consensus 203 ~~~~YTG~~~~-~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP~V~w~~~dG~w~MviGa~~~~~G~ 281 (461)
++||||+.... ..+.+++|+|+|+ ....|++. +||+...++......+||.++ .+++|++||+.++.. .|+
T Consensus 70 yyl~ys~~~~~~~~~~i~va~s~~~---~~gpw~~~--~~v~~~~~~~~~~~~iDp~vf-~d~dG~~Yl~~~~~~--~~i 141 (288)
T cd08998 70 YYLYYSVSTFGSNRSAIGLATSDTL---PDGPWTDH--GIVIESGPGRDDPNAIDPNVF-YDEDGKLWLSFGSFW--GGI 141 (288)
T ss_pred EEEEEEEEeCCCCceEEEEEEeCCC---CCCCCEEc--ceeeecCCCCCCcccccCCEE-EcCCCCEEEEeeecc--CCE
Confidence 99999987543 3456788999875 12579874 588765433233467899995 446899999998642 232
Q ss_pred EEEEE-eCC---CCCCEEccc-ccccCCCCceeeeeeEEEec
Q 012546 282 SLVYQ-TTD---FKTYELLDE-YLHAVPGTGMWECVDFYPVA 318 (461)
Q Consensus 282 v~lY~-S~D---l~~W~~~~~-l~~~~~~~gmwECPdlf~l~ 318 (461)
.+.+ +.| ...|..... +.......+..|-|.+|+-.
T Consensus 142 -~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~Egp~~~k~~ 182 (288)
T cd08998 142 -FLVELDPKTGKPLYPGGYGYNIAGRPRGHGAIEAPYIIYRG 182 (288)
T ss_pred -EEEEeCcccCCccCCCCcceEEeccCCCCCceeeeEEEEeC
Confidence 2222 222 123321111 11111123467999998874
No 20
>cd08992 GH43_like_1 Glycosyl hydrolase family 43, uncharacterized proteins. This subfamily is glycosyl hydrolase family 43 (GH43)-like and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=99.55 E-value=1.3e-13 Score=141.63 Aligned_cols=171 Identities=21% Similarity=0.262 Sum_probs=122.5
Q ss_pred cceeeeecCCCcc-cCCccceEECCEEEEEEEeCCC-----------CC--CCCCcEEEEEEecCCcCcccCceecCCC-
Q 012546 118 RTSFHFQPEKNWM-NDPNGPLFYKGWYHLFYQYNPD-----------SA--VWGNITWGHAVSADLIHWLYLPIAMVPD- 182 (461)
Q Consensus 118 Rp~fHf~P~~gwm-NDPnG~~y~~G~YHLFYQ~nP~-----------~~--~wG~~~WGHA~S~DLvhW~~~p~AL~Pd- 182 (461)
.|..=+.+..+.. .||..+++.+|+|||||++... .+ .|.....+||+|+||+||+..+.+|.+.
T Consensus 24 ~p~~~~~~e~~i~r~dP~~Vi~~~g~Y~mwYs~~~~~~~~~~~~~~~~~~~~w~~y~I~~A~S~Dgv~W~~~g~~L~~~~ 103 (349)
T cd08992 24 YPKGGLGYEEGVHRRDPSSVIKVDGLYHVWYTKSEGETDGFGTGDPEAKVFPWDKCEIWHATSKDGWTWKEEGPAIGRGE 103 (349)
T ss_pred CcccccccccCeecCCCceEEEECCEEEEEEEecCCcccccccCCccccccCCCceEEEEEECCCCCCceECCccccCCC
Confidence 4444455555544 6998899999999999986532 11 2445678999999999999999888653
Q ss_pred -CcccCCCeEeeeEEEccCCcEEEEEcccCCC----ccceEEEEEecCCCCCCcceEEEcCCCceecCCC----------
Q 012546 183 -QWYDINGVWTGSATILPDGQIVMLYTGSTDK----SVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPR---------- 247 (461)
Q Consensus 183 -~~~D~~Gv~SGSavv~~dG~~~~~YTG~~~~----~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~---------- 247 (461)
..||..++|..+|+ ..+|+++|||++.... ..+.+++|++.++. ..|++. .+||+.+..
T Consensus 104 ~g~Wd~~~vwaP~Vi-~~dGkyYM~Ysa~~~~~~~~~~~~IGvA~AdSp~----GpWtr~-d~Pil~p~~dg~w~~d~~~ 177 (349)
T cd08992 104 KGAYDDRSVFTPEVL-EHEGTYYLVYQVVKSPYLNRSFESIAMAVADSPY----GPWTKS-DEPILSPSNDGIWKGDEDN 177 (349)
T ss_pred CCCccccceECcEEE-EECCEEEEEEEecccccCCCCcceEEEEEECCcc----cccccC-CCcEecCCcCCceeeccCc
Confidence 35899999999987 4799999999975421 23567899998763 359985 689987521
Q ss_pred --------CCCCCCCCCCeeEeecCCCcEEEEEeeecC--------CceEEEEEEeCCCC-CCEEc
Q 012546 248 --------HIGPKDFRDPTTAWAGPDGKWRLTIGSKIG--------KTGISLVYQTTDFK-TYELL 296 (461)
Q Consensus 248 --------g~~~~dfRDP~V~w~~~dG~w~MviGa~~~--------~~G~v~lY~S~Dl~-~W~~~ 296 (461)
.++...+.||.|+ . .+|+|+|++.+... ..-.+.|..|++.. -|+..
T Consensus 178 ~~~~~~~g~wD~~~v~~P~v~-~-~~g~yyL~Y~G~~~g~~~~~~~~~~~iGvAvAdsP~GPf~r~ 241 (349)
T cd08992 178 RFLVKKKGSFDSHKVHDPCLF-P-FNGKFYLYYKGEQMGEEMTMGGRETKWGVAIADDPEGPYVKS 241 (349)
T ss_pred eeEeccCCCcccCceECCEEE-E-ECCEEEEEEEccccCcccccCCCCceEEEEEECCCCCCCEeC
Confidence 1334457899985 3 58999999965321 12257788898865 57654
No 21
>cd08984 GH43_5 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.53 E-value=4.4e-13 Score=134.39 Aligned_cols=169 Identities=18% Similarity=0.233 Sum_probs=120.1
Q ss_pred ccCCccceEE--CCEEEEEEEe-C---CCC-CCCC-CcEEEEEEecC-CcCcccCceecCCCCcccCCCeEeeeEEEccC
Q 012546 130 MNDPNGPLFY--KGWYHLFYQY-N---PDS-AVWG-NITWGHAVSAD-LIHWLYLPIAMVPDQWYDINGVWTGSATILPD 200 (461)
Q Consensus 130 mNDPnG~~y~--~G~YHLFYQ~-n---P~~-~~wG-~~~WGHA~S~D-LvhW~~~p~AL~Pd~~~D~~Gv~SGSavv~~d 200 (461)
.-||. ++++ +|+|||||.. . |.. ..|. ...+|+|+|+| |+||+.++.++.++..+....+|.++++. .+
T Consensus 11 ~~DP~-i~~~~~~~~~~~~yT~~~~~~~~~~~~w~~~~~i~~a~S~D~l~~W~~~g~~~~~~~~~~~~~~WAP~v~~-~~ 88 (294)
T cd08984 11 AADPT-IIYNRETKEWWMFYTNRRANVPTPGVAWVHGTDIGVASSKDGGATWTYRGTADGLEFECGRNTFWAPEVVW-HG 88 (294)
T ss_pred CCCCE-EEEeCCCCEEEEEEccccCcCCCCCcccCcCceEEEEEeCCCCCCCEEeeeeccCCCCCcccceeCceEEE-EC
Confidence 68997 8887 7899999942 1 111 2343 25799999999 99999998777665555667799999875 68
Q ss_pred CcEEEEEcccCC-----CccceEEEEEecCCCCCCcceEEEcCCCceecCCCCCCCCCCCCCeeEeecCCCcEEEEEeee
Q 012546 201 GQIVMLYTGSTD-----KSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSK 275 (461)
Q Consensus 201 G~~~~~YTG~~~-----~~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP~V~w~~~dG~w~MviGa~ 275 (461)
|+++||||.... .....+++|+|+|+ .+|++.+ ++... .....||.|+ ...+|+|+|++...
T Consensus 89 G~y~myys~~~~~~~~~~~~~~i~~a~S~Dl-----~~w~~~~--~~~~~-----~~~~iD~~vf-~~~dg~~yl~y~~~ 155 (294)
T cd08984 89 GVYHMYVTYIPGVPPDWGGPRRIVHYTSPNL-----WDWTFVG--RVDLD-----SDRVIDACVF-KLPDGRWRMWYKDE 155 (294)
T ss_pred CEEEEEEEecCCCCcccCCCcEEEEEECCCc-----CcceECC--ccccC-----CCCcEEeEEE-EeCCCEEEEEEECC
Confidence 999999997532 12346788999885 7899853 33211 1345799995 44679999999643
Q ss_pred cCCceEEEEEEeCCCCCCEEcccccccCCCCceeeeeeEEEec
Q 012546 276 IGKTGISLVYQTTDFKTYELLDEYLHAVPGTGMWECVDFYPVA 318 (461)
Q Consensus 276 ~~~~G~v~lY~S~Dl~~W~~~~~l~~~~~~~gmwECPdlf~l~ 318 (461)
+....+.+..|+|+.+|+..++++.. ..-|+|.+|+..
T Consensus 156 -~~~~~~~~a~s~D~~~w~~~~~~i~~----~~~EgP~v~k~~ 193 (294)
T cd08984 156 -RRGSTTYAADSEDLYHWTVEGPVLGD----RPHEGPNVFRWK 193 (294)
T ss_pred -CCCeEEEEEECCCCCEEEeCCccccC----CCCCCCCeeEEC
Confidence 22234567789999999987655431 134999999874
No 22
>PF11837 DUF3357: Domain of unknown function (DUF3357); InterPro: IPR021792 This entry represents the N-terminal domain of beta-fructofuranosidase, whcih is involved in the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. ; GO: 0004564 beta-fructofuranosidase activity, 0004575 sucrose alpha-glucosidase activity; PDB: 3UGG_A 3UGH_B 3UGF_B.
Probab=99.47 E-value=4.3e-15 Score=128.45 Aligned_cols=101 Identities=42% Similarity=0.581 Sum_probs=3.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHH-HHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 012546 12 PYYPPLLPEEQPSDAGTPASHRKPFKGFAAILASAIFLLSLVALI-INQTQKPLPSQNNIVPTSKPTSFSNPEPRGVAEG 90 (461)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (461)
..|+||++.+.+.. .++.++||++|.+++|+++++||++||+++ ++.++...............++...+.|||+++|
T Consensus 5 ~sY~PLP~~~~~~~-~~~~~~rR~~k~~~~i~~s~~~ll~lval~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SRGv~~G 83 (106)
T PF11837_consen 5 YSYTPLPDSSESAP-GPGGRRRRPLKCLAAIFSSLLFLLSLVALIVINNGQSPDGSSVSSSSPPPSPETATPVSRGVSEG 83 (106)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccCCCCCCCcccC-CCCcCcCCcchhHHHHHHHHHHHHHHHHHHHhhccCCCCccccccCCCCCCCccccCCCCCcccC
Confidence 34889776443322 124556888899999999999999999998 2222111000111122344455555689999999
Q ss_pred ccccccccccccccCCCCCccccc
Q 012546 91 VSAKSNSHLLRNIKGSYNWTNAMF 114 (461)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~ 114 (461)
||||++....+. ..+|||||+||
T Consensus 84 VSEKS~~~~~~~-~~~FpWtNaML 106 (106)
T PF11837_consen 84 VSEKSNGAGSGA-GNSFPWTNAML 106 (106)
T ss_dssp --------------------HHHH
T ss_pred cccccccCccCC-CCCCCCccccC
Confidence 999998874444 67899999997
No 23
>cd08985 GH43_6 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.47 E-value=1.4e-11 Score=122.05 Aligned_cols=197 Identities=18% Similarity=0.104 Sum_probs=130.6
Q ss_pred CCccceEECCEEEEEEEeCCCCCCCCCcEEEEEEecCCcCcccCceecCCCC----cccCCCeEeeeEEEcc-CCcEEEE
Q 012546 132 DPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMVPDQ----WYDINGVWTGSATILP-DGQIVML 206 (461)
Q Consensus 132 DPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~Pd~----~~D~~Gv~SGSavv~~-dG~~~~~ 206 (461)
|+ ++++++|+|++|-.....+..+ ...|-..+|+||+||+.++.+|.+.. .....++|.++++..+ +|+++|+
T Consensus 5 ~~-~i~~~~~~yY~ygs~~~~~~~~-~~gi~~~sS~DLvnW~~~g~vl~~~~~~~~~~~~~~~waP~v~y~~~~g~Y~m~ 82 (265)
T cd08985 5 GG-GILKVGGTYYWYGENKGGGDTA-FGGVSCYSSTDLVNWTFEGLALTPEEDSADLGPGRIIERPKVIYNAKTGKYVMW 82 (265)
T ss_pred cC-ceEEECCEEEEEEEecCCCCcc-cccEEEEECCCCccceECceeccccccccccccCcEEECCeEEEeCCCCEEEEE
Confidence 55 4888999999998765432111 24578889999999999999997764 3455679999997654 6999999
Q ss_pred EcccCCC-ccceEEEEEecCCCCCCcceEEEcCCCceecCCCCCCCCCCCCCeeEeecCCCcEEEEEeeecCCceEEEEE
Q 012546 207 YTGSTDK-SVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKIGKTGISLVY 285 (461)
Q Consensus 207 YTG~~~~-~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP~V~w~~~dG~w~MviGa~~~~~G~v~lY 285 (461)
|++...+ ....+++|+|++.. ..|+... .+. +.+ ...|||.|++ ++||++||++++..+. .+.+.
T Consensus 83 ~~~~~~~~~~~~igvA~Sd~p~----Gpf~~~~-~~~---~~~---~~~~Dp~vf~-DdDG~~Yl~~~~~~~~--~i~i~ 148 (265)
T cd08985 83 MHIDSSDYSDARVGVATSDTPT----GPYTYLG-SFR---PLG---YQSRDFGLFV-DDDGTAYLLYSDRDNS--DLYIY 148 (265)
T ss_pred EEeCCCCCcceeEEEEEeCCCC----CCCEECC-ccC---CCC---CCccCCceEE-cCCCCEEEEEecCCCC--ceEEE
Confidence 9986432 34568899997753 4577642 221 222 4679999954 5789999999875322 23445
Q ss_pred E-eCCCCCCEEcccccccCCCCceeeeeeEEEecccCcccccccCCCCCeEEEEeeeeCC---CcceEEEEeeecCCCCc
Q 012546 286 Q-TTDFKTYELLDEYLHAVPGTGMWECVDFYPVAINGSVGLDTSATGPGIKHVLKASLDD---TKVDHYAIGTYNPANDK 361 (461)
Q Consensus 286 ~-S~Dl~~W~~~~~l~~~~~~~gmwECPdlf~l~~~~~~~l~~s~~G~~~k~vl~~S~~~---~~~~~Y~iG~~d~~~~~ 361 (461)
+ ++|+..+.- .... .......|||.+|+.++ +++|..|... .....|++.+ + ..+.
T Consensus 149 ~L~~d~~~~~~--~~~~-~~~~~~~EaP~i~K~~g---------------~YYL~~S~~t~~~~~~~~y~~s~-s-~~GP 208 (265)
T cd08985 149 RLTDDYLSVTG--EVTT-VFVGAGREAPAIFKRNG---------------KYYLLTSGLTGWNPNDARYATAT-S-ILGP 208 (265)
T ss_pred EeCCCcccccc--eEEE-ccCCCccccceEEEECC---------------EEEEEEccCCCccCCceEEEEec-C-CCCC
Confidence 4 367777652 2221 11234789999999852 6777777532 2345676664 2 2345
Q ss_pred ccC
Q 012546 362 WTP 364 (461)
Q Consensus 362 f~p 364 (461)
|+.
T Consensus 209 ~~~ 211 (265)
T cd08985 209 WTD 211 (265)
T ss_pred ccc
Confidence 653
No 24
>cd08979 GH_J Glycosyl hydrolase families 32 and 68, which for the clan GH-J. This glycosyl hydrolase family clan J (according to carbohydrate-active enzymes database (CAZY)) includes family 32 (GH32) and 68 (GH68). The overall sequence homology between the two families is low (<15% identity), but common sequence motifs have been identified. GH32 enzymes are invertases that also include other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named inverta
Probab=99.38 E-value=6.7e-12 Score=122.49 Aligned_cols=158 Identities=21% Similarity=0.267 Sum_probs=108.3
Q ss_pred CCCcccccccccceeee--ecC----CCcccCCccceEEC-CEEEEEEEeCCCCCCCCCcEEEEEEecCCcCcccCceec
Q 012546 107 YNWTNAMFTWQRTSFHF--QPE----KNWMNDPNGPLFYK-GWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAM 179 (461)
Q Consensus 107 ~~~~~~~~~w~Rp~fHf--~P~----~gwmNDPnG~~y~~-G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL 179 (461)
+..|.....|++..--+ .|. .+.+-||. +++.+ |+|||||+.+... ......+++|+|+|+++|+..+..+
T Consensus 37 ~a~S~D~~~w~~~~~~l~~~~~~~~~~~~~~~p~-v~~~~dg~~~~~Yt~~~~~-~~~~~~i~~A~S~D~~~w~~~~~~~ 114 (276)
T cd08979 37 AASSDDGTWWTRPPAPLPPGPPGSFDDGGVWTPS-VVRDPDGTYRMFYTGYDRP-KGAVQRIGLATSKDLIHWTKHGPNP 114 (276)
T ss_pred EEEcCCCCccEECCcCccCCCCCchhcCCeEcce-EEEcCCCeEEEEEecccCC-CCCcceEEEEECCCCCceEECCCCc
Confidence 34455566676554333 222 34466887 66777 9999999976432 2335789999999999999887554
Q ss_pred C-------CCCcccCCCeEeeeEEEccC-CcEEEEEcccCCCccceEEEEEecCCCCCCcceEEEcCCCceecCCCCCCC
Q 012546 180 V-------PDQWYDINGVWTGSATILPD-GQIVMLYTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGP 251 (461)
Q Consensus 180 ~-------Pd~~~D~~Gv~SGSavv~~d-G~~~~~YTG~~~~~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~ 251 (461)
. +...++...+.++.++..++ |+++|+|++........+.+|.|.|+ .+|++....+ ....+...
T Consensus 115 ~~~~~~~~~~~~~~~~~~~dP~v~~~~~~g~y~m~~~~~~~~~~~~i~~a~S~D~-----~~W~~~~~~~--~~~~~~~~ 187 (276)
T cd08979 115 VPRWYESGNPGPWDDHAWRDPAVVRDEEGGGWRMYYGARDADERGAIGLATSPDL-----IHWTPVPPPP--GPRTGYDD 187 (276)
T ss_pred ceeeeecCCCCCcccccccccEEEEECCCCEEEEEEEeEccCCCcEEEEEECCCC-----CcceECCCCC--CCCCcccC
Confidence 2 22334556788999876544 89999999876544567889999886 8999864332 11222334
Q ss_pred CCCCCCeeEeecCCCcEEEEEeee
Q 012546 252 KDFRDPTTAWAGPDGKWRLTIGSK 275 (461)
Q Consensus 252 ~dfRDP~V~w~~~dG~w~MviGa~ 275 (461)
..+.+|.++ + .+|+|+|++.+.
T Consensus 188 ~~~e~P~~~-~-~~g~~~l~~~~~ 209 (276)
T cd08979 188 GQLEVPQVV-K-IDGRWYLLYSGR 209 (276)
T ss_pred CcCccceEE-E-ECCEEEEEEEec
Confidence 578899994 3 579999999865
No 25
>PF04616 Glyco_hydro_43: Glycosyl hydrolases family 43; InterPro: IPR006710 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 43 GH43 from CAZY includes enzymes with the following activities, beta-xylosidase (3.2.1.37 from EC), alpha-L-arabinofuranosidase (3.2.1.55 from EC); arabinanase (3.2.1.99 from EC), and xylanase (3.2.1.8 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3KST_B 1UV4_A 1YRZ_A 1YIF_B 3NQH_A 3QED_D 3QEE_A 3QEF_B 1YI7_A 1Y7B_B ....
Probab=99.36 E-value=7.2e-11 Score=116.31 Aligned_cols=183 Identities=20% Similarity=0.175 Sum_probs=125.0
Q ss_pred CcccCCccceEECCEEEEEEEeCCCCCCCCCcEEEEEEecCCcCcccCceecCCCCccc--CCCe-EeeeEEEccCCcEE
Q 012546 128 NWMNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMVPDQWYD--INGV-WTGSATILPDGQIV 204 (461)
Q Consensus 128 gwmNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~Pd~~~D--~~Gv-~SGSavv~~dG~~~ 204 (461)
+..-||. ++..+|.|+||+...... ..+..++|+||+||+..+.++.+....+ ..+. |.++++ ..+|+++
T Consensus 8 ~~~~DP~-i~~~~~~yY~~~t~~~~~-----~~i~v~~S~DL~~W~~~g~~~~~~~~~~~~~~~~~WAP~i~-~~~g~yy 80 (286)
T PF04616_consen 8 GDYADPS-IVRFGDGYYLYGTTDPEG-----PGIPVWSSKDLVNWTDAGNVLPPPPDWDWANNGNIWAPEIH-YINGKYY 80 (286)
T ss_dssp SSECSEE-EEEETTEEEEEEEEBTCE-----SBEEEEEESSSSSEEEEEECESSTTTTSTTTSETTEEEEEE-EETTEEE
T ss_pred CCCCCCE-EEEECCEEEEEEEcCCCC-----CeEEEEECCCCcccccceeeecccccccccccccccCCeEE-EcCCeEE
Confidence 5668997 888899999999866543 4578999999999999997776654322 3333 999986 4799999
Q ss_pred EEEcccCCCccceEEEEEecCCCCCCcceEEEcCCCceecCCCCCCCCCCCCCeeEeecCCCcEEEEEeeecCC--ceEE
Q 012546 205 MLYTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKIGK--TGIS 282 (461)
Q Consensus 205 ~~YTG~~~~~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP~V~w~~~dG~w~MviGa~~~~--~G~v 282 (461)
|+|+.........+.+|++++.. ..|+... ..++. .....||.++. ++||++||+.+..... .+.+
T Consensus 81 ~y~~~~~~~~~~~~~va~a~~~~----Gp~~~~~-~~~~~------~~~~iD~~vf~-d~dG~~Yl~~~~~~~~~~~~~i 148 (286)
T PF04616_consen 81 MYYSDSGGDAGSGIGVATADSPD----GPWTDPG-KIPIP------GGNSIDPSVFV-DDDGKYYLYYGSWDNGDPGGGI 148 (286)
T ss_dssp EEEEEESTSTTEEEEEEEESSTT----S-EEEEE-EEEEE------SSSSSSEEEEE-ETTSEEEEEEEESTTTSSEEEE
T ss_pred EEEEccCCCCCcceeEEEeCCcc----ccccccc-ceeec------cccccCceEEE-ecCCCcEEeCcccCCCccceeE
Confidence 99993333344568899998763 5788752 22222 24568999954 4679999999876432 2344
Q ss_pred EEEE-eCCCCCCEEcc-ccccc-C--CCCceeeeeeEEEecccCcccccccCCCCCeEEEEeeeeCC
Q 012546 283 LVYQ-TTDFKTYELLD-EYLHA-V--PGTGMWECVDFYPVAINGSVGLDTSATGPGIKHVLKASLDD 344 (461)
Q Consensus 283 ~lY~-S~Dl~~W~~~~-~l~~~-~--~~~gmwECPdlf~l~~~~~~~l~~s~~G~~~k~vl~~S~~~ 344 (461)
.+.+ +.|...+.... ..+.. . ...+.-|+|.+|+.++ +++|..|...
T Consensus 149 ~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~Egp~~~k~~g---------------~yYl~~s~~~ 200 (286)
T PF04616_consen 149 YIAELDPDGTSLTGEPVVVIFPGDEGWDGGVVEGPFVFKHGG---------------KYYLFYSAGG 200 (286)
T ss_dssp EEEEEETTTSSEEEEECEEEEEESGSSTTTBEEEEEEEEETT---------------EEEEEEEESG
T ss_pred EeecccCccccccCcccccccccccccCCccccceEEEEcCC---------------CEEEEEeccC
Confidence 4554 46777666544 22221 1 1335789999999853 6777777543
No 26
>PF04041 DUF377: Domain of unknown function (DUF377); InterPro: IPR007184 Glycosidases or glycosyl hydrolases are a big and widespread family of enzymes that hydrolyse the glycosidic bonds between carbohydrates or between a carbohydrate and an aglycone moiety. On the basis of sequence and structural similarity, the glycoside hydrolase family belongs to the beta-fructosidase (furanosidase) superfamily of glycosyl hydrolases. This leads to the prediction that proteins of this family have a glycosidase (glycoside hydrolase) activity and, most probably, act on a furanoside residue (fructose, arabinose and ribose). Crystal structure from Thermotoga maritima a member of this family, determined to high-resolution by Structural Genomics initiatives, reveals a five-bladed beta-propeller fold with three acidic residues forming the active site.; PDB: 1VKD_A 3TAW_A 3QC2_B 3R67_B.
Probab=99.36 E-value=3.3e-12 Score=129.88 Aligned_cols=197 Identities=21% Similarity=0.216 Sum_probs=126.1
Q ss_pred cceEECCE--EEEEEEeCCCCCCCCCcEEEEEEecCCcCcccCc-eecCCCCcccCCCeEeeeEEEccCCcEEEEEcccC
Q 012546 135 GPLFYKGW--YHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLP-IAMVPDQWYDINGVWTGSATILPDGQIVMLYTGST 211 (461)
Q Consensus 135 G~~y~~G~--YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p-~AL~Pd~~~D~~Gv~SGSavv~~dG~~~~~YTG~~ 211 (461)
|++.++|. |||+|...-. ..+....|.|.|+|.+||+..+ ++|.|+..|+..||.+..++. .+|+++|+||+.+
T Consensus 36 gai~~~~~~R~~l~yr~~~~--~~~~~~iglA~S~DGi~f~~~~~pil~P~~~~e~~GvEDPRVt~-i~d~yymtYta~~ 112 (312)
T PF04041_consen 36 GAIVFDGGLRVYLLYRAYGS--DIGSSRIGLARSDDGIHFERDPEPILYPDTDYEEWGVEDPRVTK-IDDTYYMTYTAYS 112 (312)
T ss_dssp EEEEETTE--EEEEEEEEES--SSSEEEEEEEEESSSSS-EE-SS-SBEE-SSTTHTEEEEEEEEE-ETTEEEEEEEEEE
T ss_pred cEEEECCeeEEEEEEEeECC--CCceeEEEEEEccCCcCceECCCCEEccCCCCcccCccceeEEE-ECCEEEEEEEEec
Confidence 56656665 8998875432 1223489999999999999887 789999999999999999985 6899999999987
Q ss_pred CCccceEEEEEecCCCCCCcceEEEcCCCceecCCC---CCCCCCCCCCeeEeecCCCcEEEEEeeecCCceEEEEEEeC
Q 012546 212 DKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPR---HIGPKDFRDPTTAWAGPDGKWRLTIGSKIGKTGISLVYQTT 288 (461)
Q Consensus 212 ~~~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~---g~~~~dfRDP~V~w~~~dG~w~MviGa~~~~~G~v~lY~S~ 288 (461)
..+ -.+++|.|+|. .+|+|.. +++.+.. ......-+|-..|-...+|+|+|+.+ .+.+.+..|+
T Consensus 113 ~~~-~~~~la~s~D~-----~~~~r~g--~~~~~~~~~~~~~~~~~kd~~lfp~ki~Gky~m~~r-----~~~i~la~S~ 179 (312)
T PF04041_consen 113 GKG-PRIGLATSKDF-----KHWERHG--KIFPPFNGNEDYRDFWSKDGALFPEKINGKYAMLHR-----DPSIWLAYSP 179 (312)
T ss_dssp SSS-EEEEEEEESSS-----SSEEEEE--CTTTTTCTS-EEEEEEEECCEEEESEETTEEEEEEE-----SSSBEEEEES
T ss_pred CCC-cccceEEccch-----HhhEEec--cccCcccccccccccccCceEEEEEEECCEEEEEEC-----CCCEEEEecC
Confidence 654 35789999996 8999984 2222111 00011225665543357899999987 3457788999
Q ss_pred CCCCCEEccc-ccccCCCCceeeeeeEEEecccCcccccccCCCCCeEEEEeeee-CCCcceEEEEee--ecCC
Q 012546 289 DFKTYELLDE-YLHAVPGTGMWECVDFYPVAINGSVGLDTSATGPGIKHVLKASL-DDTKVDHYAIGT--YNPA 358 (461)
Q Consensus 289 Dl~~W~~~~~-l~~~~~~~gmwECPdlf~l~~~~~~~l~~s~~G~~~k~vl~~S~-~~~~~~~Y~iG~--~d~~ 358 (461)
|+++|+.... ++.. ..++||+ .+++. +..-+.+ .+ -|++.... .......|.+|- +|.+
T Consensus 180 Dl~~W~~~~~~~~~~--~~~~~d~---~kiG~-g~pPi~t----~~-GwL~iyHG~~~~~~~~Y~~g~~LlD~~ 242 (312)
T PF04041_consen 180 DLIHWGNHREPLLSP--RPGWWDS---SKIGA-GPPPIKT----DE-GWLLIYHGNVTDEGRVYRLGAALLDLD 242 (312)
T ss_dssp SSSSEEEEBETSB----STTSSCS---SEEEE--S-EEEE----TT-EEEEEEEEEESSTTTEEEEEEEEE-SS
T ss_pred CcccccccccccccC--CCCcChh---hcccC-CCCceEe----cC-CEEEEEeccccCCCCEEEEEEEEEcCC
Confidence 9999998766 4322 2357887 33321 1111111 01 26655552 123345788886 5654
No 27
>cd09000 GH43_XYL_1 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend
Probab=99.34 E-value=8.9e-11 Score=117.13 Aligned_cols=168 Identities=21% Similarity=0.210 Sum_probs=108.6
Q ss_pred CcccCCccceEECCEEEEEEEeCCCCCCCCCcEEEEEEecCCcCcccCceecCCCCc--c----cCCCeEeeeEEEccCC
Q 012546 128 NWMNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMVPDQW--Y----DINGVWTGSATILPDG 201 (461)
Q Consensus 128 gwmNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~Pd~~--~----D~~Gv~SGSavv~~dG 201 (461)
+.+-||. +++++|+|+||..... + ...+..++|+||+||+.++.+|.+... + ...++|.+.++. .+|
T Consensus 6 ~~~~DP~-i~~~~~~yy~~~t~~~----~-~~~i~~~~S~Dl~~W~~~g~~~~~~~~~~~~~~~~~~~~WAP~v~~-~~g 78 (288)
T cd09000 6 GFYPDPS-ICRVGDDYYLVTSSFE----Y-FPGVPIFHSKDLVNWELIGHALTRPSQLDLDGLPDSGGIWAPTIRY-HDG 78 (288)
T ss_pred CCCCCCC-EEEECCEEEEEECCcc----c-CCCceEEECCCcCCcEEcccccCCcccccccCCCCCCceEcceEEE-ECC
Confidence 4678997 8888999998853211 1 134789999999999999988754321 1 345799999975 699
Q ss_pred cEEEEEcccCCCccceEEEEEecCCCCCCcceEEEcCCCceecCCCCCCCCCCCCCeeEeecCCCcEEEEEeeecC----
Q 012546 202 QIVMLYTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKIG---- 277 (461)
Q Consensus 202 ~~~~~YTG~~~~~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP~V~w~~~dG~w~MviGa~~~---- 277 (461)
+++|+|++........+.+|.++|.. ..|+. |++.. ...+||.+++ +++|++||+.+....
T Consensus 79 ~yy~yy~~~~~~~~~~~~v~~s~~p~----gpw~~----~~~~~------~~~iDp~vf~-d~dG~~Y~~~~~~~~~~~~ 143 (288)
T cd09000 79 TFYLITTNVDGMKDGGNFIVTADDPA----GPWSD----PVWLD------SGGIDPSLFF-DDDGKVYLVGNGWDERRGY 143 (288)
T ss_pred EEEEEEEecCCCCCCceEEEEeCCCC----CCCcC----CEecC------CCccCCceeE-cCCCCEEEEecccCCcccc
Confidence 99999998754323456788887763 34652 33221 1568999965 478999999876421
Q ss_pred -CceEEEEEEeCCCCCCEEccccc--ccCCCCceeeeeeEEEec
Q 012546 278 -KTGISLVYQTTDFKTYELLDEYL--HAVPGTGMWECVDFYPVA 318 (461)
Q Consensus 278 -~~G~v~lY~S~Dl~~W~~~~~l~--~~~~~~gmwECPdlf~l~ 318 (461)
..+.+.+.+. |...|+..+... .........|+|.+|+.+
T Consensus 144 ~~~~~i~~~~l-~~~~~~~~~~~~~~~~~~~~~~~Egp~v~k~~ 186 (288)
T cd09000 144 NGHGGIWLQEI-DLETGKLLGEPKVIWNGTGGRWPEGPHLYKRD 186 (288)
T ss_pred CCCCcEEEEEE-ccccCCCCCCcEEEEeCCCCCCcccCeEEEEC
Confidence 1233444433 333454443321 111112367999999874
No 28
>cd09003 GH43_AXH_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), xylanase (endo-alpha-L-arabinanase) as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of arabinoxylan. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose
Probab=99.32 E-value=1.6e-10 Score=117.31 Aligned_cols=176 Identities=14% Similarity=0.248 Sum_probs=114.9
Q ss_pred CcccCCccceEECCEEEEEEEeCCCCC---------CCCCcEEEEEEecCCcCcccCceecCCC--CcccCCCeEeeeEE
Q 012546 128 NWMNDPNGPLFYKGWYHLFYQYNPDSA---------VWGNITWGHAVSADLIHWLYLPIAMVPD--QWYDINGVWTGSAT 196 (461)
Q Consensus 128 gwmNDPnG~~y~~G~YHLFYQ~nP~~~---------~wG~~~WGHA~S~DLvhW~~~p~AL~Pd--~~~D~~Gv~SGSav 196 (461)
.+.-||. ++.++|+|+||....-... .+....+-..+|+||+||+.++.++.|. ..| ..++|.++++
T Consensus 7 ~~~aDP~-~~~~~g~yY~~~t~~~~~~~~~~~~~~~~~~~~~i~v~~S~DL~~W~~~g~v~~~~~~~~w-~~~~WAP~v~ 84 (311)
T cd09003 7 RYGADPT-AVVYNGRVYVYTTNDDYEYDSNTIKDNNYYNINDITVISSDDMVNWTDHGEIFVPNGIAKW-AGNSWAPSIA 84 (311)
T ss_pred CccCCCC-eEEECCEEEEEeCCCCccccccccccCCccccCcEEEEECCCCCCcEEcccccCcCCCCCc-ccccCCCceE
Confidence 4668997 6788999999987643221 1223457788999999999999888632 233 3478999987
Q ss_pred EccC----CcEEEEEcccCCCccceEEEEEecCCCCCCcceEEEcCCCceecCC-CCCCCCC-CCCCeeEeecCCCcEEE
Q 012546 197 ILPD----GQIVMLYTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPP-RHIGPKD-FRDPTTAWAGPDGKWRL 270 (461)
Q Consensus 197 v~~d----G~~~~~YTG~~~~~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p-~g~~~~d-fRDP~V~w~~~dG~w~M 270 (461)
. .+ |+++|+|+.. ...+++|+|+++. -.|+...+.|++... ++..... -.||.+|+ ++||++||
T Consensus 85 ~-~~~~~~gkyylyy~~~----~~~igva~SdsP~----GP~~~~~g~~l~~~~~~~~~~~~~~iDp~~f~-DdDG~~Yl 154 (311)
T cd09003 85 V-KKINGKGKFYLYFANG----GGGIGVLTADSPV----GPWTDPLGKPLITGSTPGCAGVVWLFDPAVFV-DDDGQGYL 154 (311)
T ss_pred E-eccCCCCEEEEEEecC----CCeEEEEEcCCCC----CCcccCCCCeeecCCCCCccCCccccCCCeEE-CCCCCEEE
Confidence 5 55 9999999864 2347899987753 578875456776532 2322122 37999955 57899999
Q ss_pred EEeeecC-----CceEEEEEE-eCCCCCCEEcccccccCCCCceeeeeeEEEec
Q 012546 271 TIGSKIG-----KTGISLVYQ-TTDFKTYELLDEYLHAVPGTGMWECVDFYPVA 318 (461)
Q Consensus 271 viGa~~~-----~~G~v~lY~-S~Dl~~W~~~~~l~~~~~~~gmwECPdlf~l~ 318 (461)
+.|+... ..+.+.+.+ ++|+..- .++... ....+.+|.|.+++..
T Consensus 155 ~~g~~~~~~~~~~~~~i~i~~l~~D~~~~--~g~~~~-i~~~~~~Egp~~~K~~ 205 (311)
T cd09003 155 YFGGGVPGGRWANPNTARVIKLGDDMISV--DGSAVT-IDAPYFFEASGLHKIN 205 (311)
T ss_pred EECCccCCCccccCCCEEEEEeCCCceec--cCCceE-ccCCCceEeeeEEEEC
Confidence 9985321 112344444 3466543 232211 1112479999999874
No 29
>cd08983 GH43_4 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.30 E-value=4.4e-10 Score=112.23 Aligned_cols=203 Identities=14% Similarity=0.098 Sum_probs=132.0
Q ss_pred CCcccCCccceEE--CCEEEEEEEeCCCCCCC-CCcEEEEEEecCCcCcccCceecCCCCcccCCCeEeeeEEEcc-CCc
Q 012546 127 KNWMNDPNGPLFY--KGWYHLFYQYNPDSAVW-GNITWGHAVSADLIHWLYLPIAMVPDQWYDINGVWTGSATILP-DGQ 202 (461)
Q Consensus 127 ~gwmNDPnG~~y~--~G~YHLFYQ~nP~~~~w-G~~~WGHA~S~DLvhW~~~p~AL~Pd~~~D~~Gv~SGSavv~~-dG~ 202 (461)
.+-+.||. +++. +|+||||+.-.-....+ +.....+++|+||+||+....++.... ...++|...++.++ +|+
T Consensus 15 ~~~~rDP~-I~r~~~~g~yy~~~T~~~~~~~~~~~~~i~i~~S~DLv~W~~~~~~~~~~~--~~~~~WAPev~~d~~~g~ 91 (276)
T cd08983 15 TKGLRDPF-ILRSHEGGKYYMIATDLKITGQTNGSQYIVVWESTDLVNWTFQRLVKVNPP--NAGNTWAPEAFWDAERGQ 91 (276)
T ss_pred CCCccCCe-EEEcCCCCEEEEEEEecCcCCcccCCCeEEEEECCcccCCcccceeecCCC--CcCcEeCccceEcCCCCe
Confidence 35668997 7776 89999999754322122 346789999999999999887653221 34578999987654 799
Q ss_pred EEEEEcccCCC---cc--ceEEEEEecCCCCCCcceEEEcCCCceecCCCCCCCCCCCCCeeEeecCCCcEEEEEeeecC
Q 012546 203 IVMLYTGSTDK---SV--QVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKIG 277 (461)
Q Consensus 203 ~~~~YTG~~~~---~~--q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP~V~w~~~dG~w~MviGa~~~ 277 (461)
++|+|+..... .. ..+..+.+.|. .+|+.. .+++. ++ ....|+.++ + .+|+|||++....
T Consensus 92 y~~~~s~~~~~~~~~~~~~~i~~~tt~Df-----~tft~p--~~~~~--~~---~~~ID~~v~-~-~~g~~Yl~~k~~~- 156 (276)
T cd08983 92 YVVYWSSRLYDNTGGFYNYRLYATTTSDF-----VTFTEP--KVWID--LG---ANVIDTTVV-K-VGGTYYRFYKNEG- 156 (276)
T ss_pred EEEEEecccCCCCCCCccEEEEEEecCcc-----cccCCC--eEeec--CC---CCeEeeEEE-E-eCCEEEEEEecCC-
Confidence 99999987542 11 22333444354 678752 45554 22 356899985 3 3599999986432
Q ss_pred CceEEEEEEeCCCC-CCEEcccccccCCCCceeeeeeEEEecccCcccccccCCCCCeEEEEeeeeCCCcceEEEEeeec
Q 012546 278 KTGISLVYQTTDFK-TYELLDEYLHAVPGTGMWECVDFYPVAINGSVGLDTSATGPGIKHVLKASLDDTKVDHYAIGTYN 356 (461)
Q Consensus 278 ~~G~v~lY~S~Dl~-~W~~~~~l~~~~~~~gmwECPdlf~l~~~~~~~l~~s~~G~~~k~vl~~S~~~~~~~~Y~iG~~d 356 (461)
.+.+.+.+|+++. .|+...... .......|-|.+|+..+. .+|+|..+.... +.|+..-+-|
T Consensus 157 -~~~i~~~~s~~l~g~~~~~~~~~--~~~~~~~EgP~v~k~~~~-------------~~y~L~~d~y~~-~~Y~~~~t~d 219 (276)
T cd08983 157 -SKDIELARSKSLTGPWTIVGTGD--AGWGGAVEGPTVFKLNNG-------------GGWYLYGDNYSG-GGYYPFDTSD 219 (276)
T ss_pred -CCcEEEEEeCCCCCCceEecccc--cCCCCceeCCeEEEECCC-------------CEEEEEEEECCC-CCeEEEEecC
Confidence 2456778899876 677654321 111236899999999631 267777765432 3455655656
Q ss_pred CCCCcccC
Q 012546 357 PANDKWTP 364 (461)
Q Consensus 357 ~~~~~f~p 364 (461)
...+.|++
T Consensus 220 ~~~~~~~~ 227 (276)
T cd08983 220 LASTSWTK 227 (276)
T ss_pred cCCCceec
Confidence 65666664
No 30
>cd08992 GH43_like_1 Glycosyl hydrolase family 43, uncharacterized proteins. This subfamily is glycosyl hydrolase family 43 (GH43)-like and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=99.26 E-value=1.9e-10 Score=118.40 Aligned_cols=189 Identities=18% Similarity=0.210 Sum_probs=122.0
Q ss_pred CcccccccccceeeeecC-CC-c----ccCCccceEECCEEEEEEEeCCC-CCCCCCcEEEEEEecCCc-CcccCc-eec
Q 012546 109 WTNAMFTWQRTSFHFQPE-KN-W----MNDPNGPLFYKGWYHLFYQYNPD-SAVWGNITWGHAVSADLI-HWLYLP-IAM 179 (461)
Q Consensus 109 ~~~~~~~w~Rp~fHf~P~-~g-w----mNDPnG~~y~~G~YHLFYQ~nP~-~~~wG~~~WGHA~S~DLv-hW~~~p-~AL 179 (461)
.+.....|+|-..=|.+. .+ | +..|. +++++|+|||||+..-. ...-.....|.|+|+|.. .|++.. +.|
T Consensus 85 ~S~Dgv~W~~~g~~L~~~~~g~Wd~~~vwaP~-Vi~~dGkyYM~Ysa~~~~~~~~~~~~IGvA~AdSp~GpWtr~d~Pil 163 (349)
T cd08992 85 TSKDGWTWKEEGPAIGRGEKGAYDDRSVFTPE-VLEHEGTYYLVYQVVKSPYLNRSFESIAMAVADSPYGPWTKSDEPIL 163 (349)
T ss_pred ECCCCCCceECCccccCCCCCCccccceECcE-EEEECCEEEEEEEecccccCCCCcceEEEEEECCcccccccCCCcEe
Confidence 344566787665323221 21 3 34575 77889999999985321 111123567888888866 698765 556
Q ss_pred CCCC------------------cccCCCeEeeeEEEccCCcEEEEEcccCC-------CccceEEEEEecCCCCCCcceE
Q 012546 180 VPDQ------------------WYDINGVWTGSATILPDGQIVMLYTGSTD-------KSVQVQNLAYPADPSDPLLLDW 234 (461)
Q Consensus 180 ~Pd~------------------~~D~~Gv~SGSavv~~dG~~~~~YTG~~~-------~~~q~q~lA~S~D~~d~lL~~W 234 (461)
.|+. .||..+|...+++ ..+|+++|||+|+.. ...+.+++|+|+++. --|
T Consensus 164 ~p~~dg~w~~d~~~~~~~~~~g~wD~~~v~~P~v~-~~~g~yyL~Y~G~~~g~~~~~~~~~~~iGvAvAdsP~----GPf 238 (349)
T cd08992 164 SPSNDGIWKGDEDNRFLVKKKGSFDSHKVHDPCLF-PFNGKFYLYYKGEQMGEEMTMGGRETKWGVAIADDPE----GPY 238 (349)
T ss_pred cCCcCCceeeccCceeEeccCCCcccCceECCEEE-EECCEEEEEEEccccCcccccCCCCceEEEEEECCCC----CCC
Confidence 6642 3677778777765 469999999999752 124678999998874 569
Q ss_pred EEcCCCceecCCCCCCCCCCCCCeeEeecCCCcE-EEEEeeecCCceEEEEEEeCCCCCCEEcccccccCCCCceeeeee
Q 012546 235 VKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKW-RLTIGSKIGKTGISLVYQTTDFKTYELLDEYLHAVPGTGMWECVD 313 (461)
Q Consensus 235 ~K~~~nPVl~~p~g~~~~dfRDP~V~w~~~dG~w-~MviGa~~~~~G~v~lY~S~Dl~~W~~~~~l~~~~~~~gmwECPd 313 (461)
+|.+.|||+... + ..+| |.. .+.+ .|+..-..+ .|. +..|+|.++|+....+.....-.|..+|||
T Consensus 239 ~r~~~nPi~~~~------~--~~~~-~~~-~~~~~~~~~~d~~~-~~~--~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~ 305 (349)
T cd08992 239 VKSPYNPITNSG------H--ETCV-WQY-KGGIAAMLTTDGPE-KNT--IQFAPDGINFEIMAHIKGAPEAIGPYRRPD 305 (349)
T ss_pred EeCCCCcccCCC------C--ceEE-Eec-CCceEEEEeccCCC-Cce--EEeCCCCccEEEeeeccCCCccccCccCcc
Confidence 999889997531 1 2477 974 4556 555543322 354 567999999998776654333345666766
Q ss_pred EEE
Q 012546 314 FYP 316 (461)
Q Consensus 314 lf~ 316 (461)
-+.
T Consensus 306 ~~~ 308 (349)
T cd08992 306 ADE 308 (349)
T ss_pred ccc
Confidence 543
No 31
>cd08981 GH43_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.17 E-value=2.6e-09 Score=107.47 Aligned_cols=135 Identities=19% Similarity=0.156 Sum_probs=93.8
Q ss_pred CcccCCccceEE--CCEEEEEEEeCCCCCCCCCcEEEEEEecCCcCcccCceecCCCC-cccCCCeEeeeEEEccCCcEE
Q 012546 128 NWMNDPNGPLFY--KGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMVPDQ-WYDINGVWTGSATILPDGQIV 204 (461)
Q Consensus 128 gwmNDPnG~~y~--~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~Pd~-~~D~~Gv~SGSavv~~dG~~~ 204 (461)
.++-||. ++++ +|+|+||..............+...+|+||+||+..+.++.+.. .+...++|...+. ..+|+++
T Consensus 4 ~~~~DP~-v~~~~~~g~yYl~~T~~~~~~~~~~~gi~v~~S~DLv~W~~~g~~~~~~~~~~~~~~~WAP~v~-~~~G~yy 81 (291)
T cd08981 4 IRIRDPF-ILADPETGTYYLYGTTDPNIWGGEGTGFDVYKSKDLKDWEGPYPVFRPPDDFWADDNFWAPEVH-EYKGRYY 81 (291)
T ss_pred ccccCCE-EEEECCCCEEEEEEecCccccccCCCcEEEEECCChhcccccceeeccCCCcCccccccCCeee-eeCCEEE
Confidence 4578997 7887 99999999754322100123578999999999999998886543 3445689999986 4799999
Q ss_pred EEEcccCCC-ccceEEEEEecCCCCCCcceEEEcCCCceecCCCCCCCCCCCCCeeEeecCCCcEEEEEee
Q 012546 205 MLYTGSTDK-SVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGS 274 (461)
Q Consensus 205 ~~YTG~~~~-~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP~V~w~~~dG~w~MviGa 274 (461)
|||+..... ....+.+|++++.. -.|+.....|+.. .+ ....||.++ .+.||++||+.+.
T Consensus 82 ly~s~~~~~~~~~~~~va~s~~p~----GP~~~~~~~~~~~--~~---~~~iDp~~f-~DdDG~~Yl~~~~ 142 (291)
T cd08981 82 MFATFHNPGGERRGTAILVSDSPE----GPFVPHSDGPVTP--ED---WMCLDGTLY-VDEDGKPWMVFCH 142 (291)
T ss_pred EEEEeccCCCceeeEEEEECCCCC----CCCEeCCCCccCC--CC---CceEcCceE-EcCCCCEEEEEEe
Confidence 999876443 22345788887653 4687653344422 11 235799984 4578999999864
No 32
>cd08988 GH43_ABN Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-bla
Probab=99.14 E-value=3.7e-09 Score=105.42 Aligned_cols=170 Identities=18% Similarity=0.188 Sum_probs=106.3
Q ss_pred cCCccceEECCEEEEEEEeCCCCCCCCCcEEEEEEecCCcCcccCceecCCCCcc-------cCCCeEeeeEEEccCCcE
Q 012546 131 NDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMVPDQWY-------DINGVWTGSATILPDGQI 203 (461)
Q Consensus 131 NDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~Pd~~~-------D~~Gv~SGSavv~~dG~~ 203 (461)
-||. ++..+|+|+||.... .+..++|+||+||+..+.+|.+...+ ...++|...+.. .+|++
T Consensus 1 ~DP~-vi~~~~~YY~~~T~~---------g~~v~~S~DL~~W~~~g~~~~~~~~~~~~~~~~~~~~~WAP~v~~-~~G~y 69 (279)
T cd08988 1 HDPV-IIKEGDTWYVFGTGP---------GITILSSKDLVNWTYSGSAFATEPTWKKRVPPSFDGHLWAPDIYQ-HNGKF 69 (279)
T ss_pred CCCE-EEEECCEEEEEEecC---------CEEEEECCCcCCccccCccccCCCccccccCCCCCCCEecceEEE-ECCEE
Confidence 3897 788899999987631 36789999999999999888543322 236899999864 68999
Q ss_pred EEEEcccCCC-ccceEEEEEecCCCCCCc-ceEEEcCCCceecCCCCCCCCCCCCCeeEeecCCCcEEEEEeeecCCceE
Q 012546 204 VMLYTGSTDK-SVQVQNLAYPADPSDPLL-LDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKIGKTGI 281 (461)
Q Consensus 204 ~~~YTG~~~~-~~q~q~lA~S~D~~d~lL-~~W~K~~~nPVl~~p~g~~~~dfRDP~V~w~~~dG~w~MviGa~~~~~G~ 281 (461)
+|||++.... ..+.+++|++++...|.- ..|++ ..+|+.+... ....-.||.+++ ++||++||+.|+.. .|
T Consensus 70 ylyys~~~~~~~~~~igva~s~~p~Gp~~~~~w~~--~~~i~~~~~~-~~~~~iDp~~f~-DdDG~~Yl~~g~~~--~g- 142 (279)
T cd08988 70 YLYYSVSAFGSNTSAIGLAVNKTIDGPSPDYGWEK--GGVVISSDAS-DNYNAIDPAIIF-DQHGQPWLSFGSFW--GG- 142 (279)
T ss_pred EEEEEeccCCCCCceEEEEEcCCCCCCCcCcCccc--cCceEecCCC-CCCCccCCceEE-cCCCCEEEEecccC--CC-
Confidence 9999986532 245678999987643310 12443 2456543221 113457999965 57899999998532 23
Q ss_pred EEEEE-eCCCCCCEEcccc---cccCCCCceeeeeeEEEec
Q 012546 282 SLVYQ-TTDFKTYELLDEY---LHAVPGTGMWECVDFYPVA 318 (461)
Q Consensus 282 v~lY~-S~Dl~~W~~~~~l---~~~~~~~gmwECPdlf~l~ 318 (461)
+.+.+ +.|...-...+.. .......+..|-|-+++-.
T Consensus 143 i~~~eL~~d~~~~~~~~~~~~i~~~~~~~~~~Egp~i~k~~ 183 (279)
T cd08988 143 IKLFELDKDTMKPAEPGELHSIAGRERSSAAIEAPFILYRG 183 (279)
T ss_pred EEEEEECcccCCccCCCcceEEeccCCCCCceEeeEEEEcC
Confidence 22333 3454332111111 1111112357999888764
No 33
>cd08989 GH43_XYL Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended
Probab=99.02 E-value=2.4e-08 Score=99.19 Aligned_cols=125 Identities=18% Similarity=0.143 Sum_probs=87.6
Q ss_pred CcccCCccceEECCEEEEEEEeCCCCCCCCCcEEEEEEecCCcCcccCceecCCCCcc------cCCCeEeeeEEEccCC
Q 012546 128 NWMNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMVPDQWY------DINGVWTGSATILPDG 201 (461)
Q Consensus 128 gwmNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~Pd~~~------D~~Gv~SGSavv~~dG 201 (461)
+..-||. ++.++|.|+||+.-... .......+|+||+||+..+.++...... ...++|...+. ..+|
T Consensus 6 ~~~~DP~-ii~~~~~yY~~~t~~~~-----~~g~~~~~S~DL~~W~~~g~~~~~~~~~~~~~~~~~~~~WAP~v~-~~~G 78 (269)
T cd08989 6 GDNPDPS-IIRAGDDYYMASSTFEW-----FPGVQIHHSTDLVNWHLIGHPLDRLEDLDMKGNPYSGGIWAPCLS-YYDG 78 (269)
T ss_pred CCCCCCc-EEEECCeEEEEECcccc-----CCCcEEEECCccCCCEEccccccCccccccccCCCCCcEEcceEE-EECC
Confidence 5567997 88899999999853211 1135678999999999988776542211 24579999986 4799
Q ss_pred cEEEEEcccCCCccceEEEEEecCCCCCCcceEEEcCCCceecCCCCCCCCCCCCCeeEeecCCCcEEEEEee
Q 012546 202 QIVMLYTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGS 274 (461)
Q Consensus 202 ~~~~~YTG~~~~~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP~V~w~~~dG~w~MviGa 274 (461)
+++|+|+.........+.+|++++.. -.|+. |+... ..-.||.++. ++||+.||+.|.
T Consensus 79 ~yy~yy~~~~~~~~~~i~va~sd~~~----Gpw~~----~~~~~------~~~IDp~~f~-D~dG~~Yl~~~~ 136 (269)
T cd08989 79 KFWLIYTAVKVWKDCHNYLFTAEDIT----GPWSR----PIFLN------YGGFDPSLFH-DDDGKKYLINMG 136 (269)
T ss_pred EEEEEEeccccCCCceEEEEEECCCC----CCCcC----CEECC------CCcccCceEE-cCCCCEEEEecC
Confidence 99999998754333457889887754 34653 33321 1348999954 579999999875
No 34
>cd08980 GH43_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=98.98 E-value=4.2e-08 Score=97.88 Aligned_cols=188 Identities=14% Similarity=0.104 Sum_probs=114.7
Q ss_pred CCccceEECCEEEEEEEeCCCCCCCCCcEEEEEEecCCcCcccCceec--CCCCc-ccCCCeEeeeEEEccCCcEEEEEc
Q 012546 132 DPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAM--VPDQW-YDINGVWTGSATILPDGQIVMLYT 208 (461)
Q Consensus 132 DPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL--~Pd~~-~D~~Gv~SGSavv~~dG~~~~~YT 208 (461)
||. ++..++.|+||+.-.. .....++|+||+||+....++ .+... ....++|...+.. .+|+++|+|+
T Consensus 2 DP~-v~~~~d~yY~~~T~~~-------~~~~i~~S~dl~~w~~~~~~~~~~~~~~~~~~~~~WAP~i~~-~~g~yylyys 72 (288)
T cd08980 2 DPW-VIRHDGYYYFTATTGE-------DRIELRRSDTLAGLATAESKVVWTPPDSGPYSGNLWAPELHY-IDGKWYIYFA 72 (288)
T ss_pred CCe-EEEECCEEEEEEEeCC-------CcEEEEecCChhHhhcCCcEEEecCCCCCCccccEECceEEE-ECCEEEEEEE
Confidence 897 7788899999986321 347899999999999876332 23321 3456899999864 7999999999
Q ss_pred ccCC--CccceEEEEEecCCCCCCcceEEEcCCCceecCCCCCCCCCCCCCeeEeecCCCcEEEEEeeecC---CceEEE
Q 012546 209 GSTD--KSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKIG---KTGISL 283 (461)
Q Consensus 209 G~~~--~~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP~V~w~~~dG~w~MviGa~~~---~~G~v~ 283 (461)
.... ...+.+.+|.+++..++ +..|+.. .+++... + ..-.||.++ . .+|++||+++.... ....+.
T Consensus 73 ~~~~~~~~~~~~~v~~a~~~~~~-~Gpw~~~--~~~~~~~-~---~~~iDp~~~-~-ddG~~Yl~~~~~~~~~~~~~~i~ 143 (288)
T cd08980 73 AGDGGGNANHRMYVLENAGADPP-TGPWTFK--GRLADPT-D---RWAIDGTVF-E-HNGQLYFVWSGWEGRTNGNQNLY 143 (288)
T ss_pred ccCCCCCcceeEEEEEeCCCCCC-CCCceEe--eEeccCC-C---CeeeeeEEE-E-ECCEEEEEEEccCCCCCCCccEE
Confidence 8754 23455677877652223 3679874 3443211 1 234799995 4 35999999875421 122344
Q ss_pred EEEeCCCCCCEEcccc--cccCC------CCceeeeeeEEEecccCcccccccCCCCCeEEEEeeeeCCCcceEEEEee
Q 012546 284 VYQTTDFKTYELLDEY--LHAVP------GTGMWECVDFYPVAINGSVGLDTSATGPGIKHVLKASLDDTKVDHYAIGT 354 (461)
Q Consensus 284 lY~S~Dl~~W~~~~~l--~~~~~------~~gmwECPdlf~l~~~~~~~l~~s~~G~~~k~vl~~S~~~~~~~~Y~iG~ 354 (461)
+.+..|-..+. ++. +.... +.+.-|-|.+++.++ +++|..|........|.+|-
T Consensus 144 ~~~l~~~~~~~--g~~~~i~~p~~~we~~~~~~~EgP~~~k~~G---------------~yYl~yS~~~~~~~~Y~v~~ 205 (288)
T cd08980 144 IAKMSNPWTLT--GPRVLISRPEYDWERQGPGVNEGPAALKRNG---------------KVFLTYSASGSWTPDYCLGL 205 (288)
T ss_pred EEECCCCCccC--CcceEecCCCCCceecCceeeECcEEEEECC---------------EEEEEEECCCCCCCCCEEEE
Confidence 45554433332 221 11110 113568888888742 67777776544344566654
No 35
>cd09001 GH43_XYL_2 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend
Probab=98.93 E-value=7.8e-08 Score=95.53 Aligned_cols=159 Identities=17% Similarity=0.148 Sum_probs=101.7
Q ss_pred CcccCCccceEECCEEEEEEEeCCCCCCCCCcEEEEEEecCCcCcccCceecCCCCc-----------ccCCCeEeeeEE
Q 012546 128 NWMNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMVPDQW-----------YDINGVWTGSAT 196 (461)
Q Consensus 128 gwmNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~Pd~~-----------~D~~Gv~SGSav 196 (461)
+..-||. +++.+|+|+||....-. ...+...+|+||+||+..+.++..... --..++|...++
T Consensus 9 ~~~~DP~-v~~~~~~yY~~~t~~~~-----~~gi~v~~S~Dl~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~WAP~v~ 82 (269)
T cd09001 9 ADYPDPD-VIRVGDDYYMVSTTMHY-----SPGAPILHSKDLVNWEIIGYVYDRLDDGDAYNLENGGNAYGKGQWAPSLR 82 (269)
T ss_pred CCCCCCe-EEEECCEEEEEECCccc-----CCCCEEEEcccccCCeEcccccccccccccccccccCCCCCCCEECCceE
Confidence 5567997 78889999999863211 123567899999999998876643211 113579999986
Q ss_pred EccCCcEEEEEcccCCCccceEEEEEecCCCCCCcceEEEcCCCceecCCCCCCCCCCCCCeeEeecCCCcEEEEEeeec
Q 012546 197 ILPDGQIVMLYTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKI 276 (461)
Q Consensus 197 v~~dG~~~~~YTG~~~~~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP~V~w~~~dG~w~MviGa~~ 276 (461)
. .+|+++|+|+... ..+.+|++++.. -.|+.. .++ ....||.+++ +.||+.||+.+..
T Consensus 83 ~-~~gkyy~yys~~~----~~~~v~~a~~p~----Gpw~~~--~~~---------~~~iDp~~f~-D~dG~~Yl~~~~~- 140 (269)
T cd09001 83 Y-HNGTFYVFFCTNT----GGTYIYTADDPE----GPWTKT--ALD---------GGYHDPSLLF-DDDGTAYLVYGGG- 140 (269)
T ss_pred E-ECCEEEEEEEecC----CCeEEEEcCCCC----CCCcCC--CcC---------CCcccCceEE-cCCCCEEEEeCCC-
Confidence 5 6999999999862 346788877652 356543 111 1458999955 5789999998743
Q ss_pred CCceEEEEEE-eCCCCCCEEccc-ccccCC-CCceeeeeeEEEec
Q 012546 277 GKTGISLVYQ-TTDFKTYELLDE-YLHAVP-GTGMWECVDFYPVA 318 (461)
Q Consensus 277 ~~~G~v~lY~-S~Dl~~W~~~~~-l~~~~~-~~gmwECPdlf~l~ 318 (461)
+ +.+.+ +.|+....-... ++.... ..+..|-|.+++-+
T Consensus 141 ---~-i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~Egp~i~k~~ 181 (269)
T cd09001 141 ---T-IRLVELSPDLTGVGGKDQVIIDAGEEIGLGAEGSHLYKIN 181 (269)
T ss_pred ---c-EEEEEECcccCCcCCCceEEEeCCCccccccccCeEEEEC
Confidence 2 33333 567665521111 221111 12367999998753
No 36
>cd08986 GH43_7 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=98.91 E-value=6.9e-08 Score=95.98 Aligned_cols=130 Identities=20% Similarity=0.185 Sum_probs=87.4
Q ss_pred cccCCccceEE-CCEEEEEEEeCCCCC----CC-CCcEEEEEEecCCcCcccCceecCCCCc------------ccCCCe
Q 012546 129 WMNDPNGPLFY-KGWYHLFYQYNPDSA----VW-GNITWGHAVSADLIHWLYLPIAMVPDQW------------YDINGV 190 (461)
Q Consensus 129 wmNDPnG~~y~-~G~YHLFYQ~nP~~~----~w-G~~~WGHA~S~DLvhW~~~p~AL~Pd~~------------~D~~Gv 190 (461)
||-||. ++.. +|+|+|+....-.+. .| .....-.++|+||+||+..+.++..... ....++
T Consensus 1 ~~rDP~-v~~~~dg~Yy~~~T~~~~~~~~~~~~~~~~gi~i~~S~DLv~W~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~ 79 (269)
T cd08986 1 WIRDTY-VTLGPDGYYYLTGTTPPPGLPFEDCSIVNDGIPLWRSKDLKKWESLGLIWDREKDATWQSYWIDEDDWYKNAV 79 (269)
T ss_pred CCcCCe-EEecCCCcEEEEEccCCccccccccccCCCceEEEeCccccCccccCcccccCCcccccccccccCCcccCCc
Confidence 689998 5655 679999987542211 01 1234668999999999998877754321 234679
Q ss_pred EeeeEEEccCCcEEEEEcccCCC-ccceEEEEEecCCCCCCcceEEEcCCC-ceecCCCCCCCCCCCCCeeEeecCCCcE
Q 012546 191 WTGSATILPDGQIVMLYTGSTDK-SVQVQNLAYPADPSDPLLLDWVKYPGN-PVLVPPRHIGPKDFRDPTTAWAGPDGKW 268 (461)
Q Consensus 191 ~SGSavv~~dG~~~~~YTG~~~~-~~q~q~lA~S~D~~d~lL~~W~K~~~n-PVl~~p~g~~~~dfRDP~V~w~~~dG~w 268 (461)
|...+.. .+|+++|+|+..... ....+.+|++++.. -.|+..... ++ ..-.||.++ .+.||++
T Consensus 80 WAP~v~~-~~g~yyl~~s~~~~~~~~~~i~va~a~~p~----Gp~~~~~~~~~~---------~~~iD~~~f-~D~DG~~ 144 (269)
T cd08986 80 WAPELHY-IKGRWYLVACMNNPGYGGSSILLSTSGKIE----GPYKHITGNKPL---------FPGIDPSLF-EDDDGKV 144 (269)
T ss_pred CCceEEE-ECCEEEEEEEccCCCCCceEEEEEeCCCCC----CCcEeccCCCCC---------CCccCCceE-EcCCCCE
Confidence 9999864 689999999976432 23456678776653 457764322 11 134799994 5578999
Q ss_pred EEEEee
Q 012546 269 RLTIGS 274 (461)
Q Consensus 269 ~MviGa 274 (461)
||+.+.
T Consensus 145 Yl~~~~ 150 (269)
T cd08986 145 YLVWHN 150 (269)
T ss_pred EEEeeC
Confidence 999874
No 37
>cd08993 GH43_DUF377 Glycosyl hydrolase family 43 containing a domain of unknown function. This subfamily has sequences similar to the glycosyl hydrolase family 43 (GH43) and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=98.90 E-value=9.4e-09 Score=101.57 Aligned_cols=99 Identities=23% Similarity=0.335 Sum_probs=76.1
Q ss_pred eeEEEccCCcEEEEEcccCCCccceEEEEEecCCCCCCcceEEEcCCCceecCC--CCCCCCCCCCCeeEeecCCCcEEE
Q 012546 193 GSATILPDGQIVMLYTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPP--RHIGPKDFRDPTTAWAGPDGKWRL 270 (461)
Q Consensus 193 GSavv~~dG~~~~~YTG~~~~~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p--~g~~~~dfRDP~V~w~~~dG~w~M 270 (461)
..++ ..||+++|+||+........+++|+|.|+ ++|++.+ +|++.++ ...+...++||.|+ + .+|+|+|
T Consensus 3 P~v~-~~~G~y~l~y~~~~~~~~~~ig~A~S~Dg-----~~~~~~~-~~~i~p~~~~~~~~~gv~dP~v~-~-~~g~y~m 73 (268)
T cd08993 3 PAVV-YDNGEFYLLYRAAGNDGVIRLGLARSRDG-----LHFEIDP-DPPVWPPPEDGFEEGGVEDPRIV-K-IDDTYYI 73 (268)
T ss_pred CeEE-EECCEEEEEEEEECCCCceEEEEEEECCC-----ceEEECC-cceEcCCCCCcccccCccCcEEE-E-ECCEEEE
Confidence 3454 47999999999876555678999999996 8999975 5655542 23456778999995 3 5889999
Q ss_pred EEeeec--CCceEEEEEEeCCCCCCEEccccc
Q 012546 271 TIGSKI--GKTGISLVYQTTDFKTYELLDEYL 300 (461)
Q Consensus 271 viGa~~--~~~G~v~lY~S~Dl~~W~~~~~l~ 300 (461)
++++.. .....+.+++|+|+.+|++.+..+
T Consensus 74 ~Yta~~~~~~~~~i~lA~S~D~~~W~~~~~~~ 105 (268)
T cd08993 74 TYAARPNAPNGTRIGLATTKDFITFERLGTSL 105 (268)
T ss_pred EEEccCCCCCCcEEEEEEeCCcceEEEecccC
Confidence 998864 344578899999999999987543
No 38
>COG2152 Predicted glycosylase [Carbohydrate transport and metabolism]
Probab=98.79 E-value=5.6e-08 Score=97.40 Aligned_cols=151 Identities=23% Similarity=0.261 Sum_probs=112.4
Q ss_pred cceEECCEEEEEEEeCCC--CCCCCCcEEEEEEecCCcC-cccCc-eecCC-CCcccCCCeEeeeEEEccCCcEEEEEcc
Q 012546 135 GPLFYKGWYHLFYQYNPD--SAVWGNITWGHAVSADLIH-WLYLP-IAMVP-DQWYDINGVWTGSATILPDGQIVMLYTG 209 (461)
Q Consensus 135 G~~y~~G~YHLFYQ~nP~--~~~wG~~~WGHA~S~DLvh-W~~~p-~AL~P-d~~~D~~Gv~SGSavv~~dG~~~~~YTG 209 (461)
++++.++.+||+|+-.-. ...-.-.+.+-|.|+|+++ |+..+ +.+.| ..+++.-||.+..++. .+|+++|.|||
T Consensus 35 av~~~~~~~~~l~Rv~~~yye~~~~~s~l~ia~s~dgi~~~~~e~ep~~~P~~~~~e~~G~EDPRvt~-I~~~y~mtYTa 113 (314)
T COG2152 35 AVVLVGGELLLLYRVVEGYYEDHSSISHLRIARSDDGIGEFEIEPEPTLWPANYPYEIYGIEDPRVTK-IGGRYYMTYTA 113 (314)
T ss_pred eeEEECCEEEEEEEEeccccccCccceEEEEEecccCCCceecCCcceEecCCCchhhhcccCceEEE-ECCEEEEEEEe
Confidence 688899999999997110 0011346788899999999 99777 78899 6678889999999985 79999999999
Q ss_pred cCCCccceEEEEEecCCCCCCcceEEEcCCCceecCCCCCCCCCCCCCeeEeecCCCcEEEEEeeec-CC--ceEEEEEE
Q 012546 210 STDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKI-GK--TGISLVYQ 286 (461)
Q Consensus 210 ~~~~~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP~V~w~~~dG~w~MviGa~~-~~--~G~v~lY~ 286 (461)
.+.. .+..++|+++|. .+|+|.+ ++. +| ++||-.++-...+|+|.|+---.. +. .+-+.+..
T Consensus 114 ~s~~-g~~~~la~t~~f-----~n~~rig--~i~-~p------dn~~~~lfP~~~ngk~~~lhr~~~~~~~~~~niwia~ 178 (314)
T COG2152 114 YSDK-GPRLALAVTKDF-----LNWERIG--AIF-PP------DNKDAALFPKKINGKYALLHRPVLGEYGMKGNIWIAF 178 (314)
T ss_pred cCCC-Ccccchhhhhhh-----hhhhhcc--ccc-CC------CCCCceEeeEEecCcEEEEEeecccccCccCceEEEE
Confidence 8544 357789999997 7899962 333 22 456666643346789999865332 22 46889999
Q ss_pred eCCCCCCEEcccccc
Q 012546 287 TTDFKTYELLDEYLH 301 (461)
Q Consensus 287 S~Dl~~W~~~~~l~~ 301 (461)
|.|+.+|.....++.
T Consensus 179 S~dl~~w~~~~~~l~ 193 (314)
T COG2152 179 SPDLEHWGIHRKLLG 193 (314)
T ss_pred cCCccCCCccceeec
Confidence 999999997755543
No 39
>PF02435 Glyco_hydro_68: Levansucrase/Invertase; InterPro: IPR003469 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family consists of the glycosyl hydrolase 68 family (GH68 from CAZY), including several bacterial levansucrase enzymes, and invertase from Zymomonas. Levansucrase (2.4.1.10 from EC), also known as beta-D-fructofuranosyl transferase, catalyses the conversion of sucrose and (2,6-beta-D-fructosyl)(N) to glucose and (2,6-beta-D-fructosyl)(N+1), where other sugars can also act as fructosyl acceptors. Invertase, or extracellular sucrase (3.2.1.26 from EC), catalyses the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides.; GO: 0050053 levansucrase activity, 0009758 carbohydrate utilization; PDB: 2YFR_A 2YFT_A 2YFS_A 1W18_A 3OM7_B 3OM4_C 3OM6_D 3OM5_A 3OM2_A 1PT2_A ....
Probab=98.77 E-value=3.7e-07 Score=95.82 Aligned_cols=184 Identities=20% Similarity=0.185 Sum_probs=114.3
Q ss_pred cCCccceE-ECCEEEEEEEeCCCCC----CCCCcEEEEEEecCCc----CcccCceecCCCCcc-cCCCeEeeeEEEcc-
Q 012546 131 NDPNGPLF-YKGWYHLFYQYNPDSA----VWGNITWGHAVSADLI----HWLYLPIAMVPDQWY-DINGVWTGSATILP- 199 (461)
Q Consensus 131 NDPnG~~y-~~G~YHLFYQ~nP~~~----~wG~~~WGHA~S~DLv----hW~~~p~AL~Pd~~~-D~~Gv~SGSavv~~- 199 (461)
-|+.|-+. ++|+.-+|-.-.|... .++..++++..|++.. +|+..+.++.....+ ....-||||+++..
T Consensus 63 qd~~G~~~~~~Gy~vvfaL~a~r~~~~~~Rh~~A~I~~fY~k~G~~~~~~W~~~G~vf~~g~~~~~~s~EWSGSA~l~~~ 142 (428)
T PF02435_consen 63 QDADGNVVNYNGYQVVFALTADRHEDPDDRHDDARIYLFYSKDGDNANDGWKNGGPVFPEGASFVPGSREWSGSATLNND 142 (428)
T ss_dssp E-TTSSBEEBTTEEEEEEEEE-TT--GGGCSCGEEEEEEEEETT--SGGG-EEEEESS-TTCCCCGCEEEEEEEEEESTT
T ss_pred ecccccEEEECCEEEEEEEecCCccCCccccCCcEEEEEEecCCCCccCCceECcccCCCCCCCCccCcEecCceEEcCC
Confidence 35556444 5997777777665532 3467899999999999 999999877555431 23467999999887
Q ss_pred CCcEEEEEcccCC----CccceE-----EEEEecCCCCCCcceEEEcCCCceecCCCCCC-------CCCCCCCeeEeec
Q 012546 200 DGQIVMLYTGSTD----KSVQVQ-----NLAYPADPSDPLLLDWVKYPGNPVLVPPRHIG-------PKDFRDPTTAWAG 263 (461)
Q Consensus 200 dG~~~~~YTG~~~----~~~q~q-----~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~-------~~dfRDP~V~w~~ 263 (461)
||++.+|||.... ...|.. +++...|. ..-+..|.+. ..++.+...+. ...||||++| .+
T Consensus 143 dg~I~LfYTav~~~~~~~~~Q~l~t~~~g~~~~d~~-~v~i~g~~~~--~~lfe~DG~~Yqt~~Q~~~~afRDP~~f-~D 218 (428)
T PF02435_consen 143 DGSIQLFYTAVGFSDTPTFRQRLATATLGLIHADDD-GVWITGFSNH--HELFEGDGKHYQTYEQNPGYAFRDPHVF-ED 218 (428)
T ss_dssp TSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEECST-EEEEEEEEEE--EEEES--SSSB--HHHHHH---EEEEEE-EE
T ss_pred CCeEEEEEeecccCCCcchhhhhhhHhcCeeecCCC-ceeEccccce--eEeeccchhhhhChhhcCCccccCCeeE-EC
Confidence 8999999998542 222222 22333331 1122345543 34555432211 2579999994 44
Q ss_pred -CCCcEEEEEeeec-------------------------C--------CceEEEEEEeCC--CCCCEEcccccccCCCCc
Q 012546 264 -PDGKWRLTIGSKI-------------------------G--------KTGISLVYQTTD--FKTYELLDEYLHAVPGTG 307 (461)
Q Consensus 264 -~dG~w~MviGa~~-------------------------~--------~~G~v~lY~S~D--l~~W~~~~~l~~~~~~~g 307 (461)
.+|+-||+.-+.. + ..|+|.+.+.+| +..|++.++|+.+..-+.
T Consensus 219 P~~G~~YLvFEgNtg~~~~~~~~g~~d~~~~~~~~~~~~~~~~~~A~~~ng~iGi~~~~~~~~~~w~~~~PL~~a~~v~d 298 (428)
T PF02435_consen 219 PEDGKRYLVFEGNTGGERNWANYGGDDLGNVPGDPKLENNDNKSGASYANGAIGIAKLTNDDGTVWELLPPLLSANGVND 298 (428)
T ss_dssp TTTTEEEEEEEEEBSTTSBGGGT-SHHHHHHHHHHHHHHSCCHHHHHH-EEEEEEEEESTTTTSEEEEEEEEEEETTTBS
T ss_pred CCCCcEEEEEecccCCCCCccccCccccccccccccccccccccccceecceeeeEEecCCCCCccEEeCcceecccccc
Confidence 6888888874320 0 267888888754 568999999998755455
Q ss_pred eeeeeeEEEec
Q 012546 308 MWECVDFYPVA 318 (461)
Q Consensus 308 mwECPdlf~l~ 318 (461)
..|-|+++.+.
T Consensus 299 e~ERP~iv~~~ 309 (428)
T PF02435_consen 299 ELERPHIVFMN 309 (428)
T ss_dssp -EEEEEEEEET
T ss_pred cccCCcEEEEC
Confidence 89999999996
No 40
>cd08987 GH62 Glycosyl hydrolase family 62, characterized arabinofuranosidases. The glycosyl hydrolase family 62 includes eukaryotic and prokaryotic enzymes, most of which are characterized arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. The enzyme does not act on xylose moieties in xylan that are adorned with an arabinose side chain at both O2 and O3 positions, nor does it display any non-specific arabinofuranosidase activity. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose or xylan. The catalytic mechanism of this family has not yet been determined, but is predicted to display a single displacement or inverting mechanism, based on its location in the same carbohydrate-active enzymes database (CAZY) clan (Clan F) as that occupied by GH43, a well characterized inverting family. Similarly, the catalytic residues are predicted fr
Probab=98.77 E-value=6e-07 Score=90.14 Aligned_cols=210 Identities=18% Similarity=0.302 Sum_probs=131.3
Q ss_pred ccccceeeeecCCCc---ccCCccceEECCEEEEEEEeCCCCCCCCCcEEEEEEecCCcCcccCceecC----CCCcccC
Q 012546 115 TWQRTSFHFQPEKNW---MNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMV----PDQWYDI 187 (461)
Q Consensus 115 ~w~Rp~fHf~P~~gw---mNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~----Pd~~~D~ 187 (461)
+|.-+.--.+|..|| +.||- +++++|+||+|-..+-. ..|+-+-+. |+||+..+-|+. +.. ..
T Consensus 6 ~w~stg~l~~pk~~~~~~lkDPt-iv~~nGkYyvYgT~~~~------~~~~s~~~S-f~~Ws~~g~A~q~~l~~~~--~~ 75 (303)
T cd08987 6 RWTSTGPLISPKSDWIVAIKDPT-VVYYNGRYHVYATTADA------GNYGSMYFN-FTDWSQAASATQYYLQNGN--MT 75 (303)
T ss_pred eeccCCccccCCCCCeeeecCCe-EEEECCEEEEEEccCCC------CCceeeeec-ccCHhHhccchhhcccCCC--CC
Confidence 343344556788999 79997 67788999999875431 124333333 999998886652 221 23
Q ss_pred CCeEeeeEEE-ccCCcEEEEEcccCCCccceEEEEEecCCCCCCcceEEEcCCCceecCCCCCCCCCCCCCeeEeecCCC
Q 012546 188 NGVWTGSATI-LPDGQIVMLYTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDG 266 (461)
Q Consensus 188 ~Gv~SGSavv-~~dG~~~~~YTG~~~~~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP~V~w~~~dG 266 (461)
.+.|...++. .+++++||+|+.. ..+.|++.|..+| ..|... .|++...........-|++|+ .+|+
T Consensus 76 ~~fwAPqVfyf~pk~kwYL~Yq~~------~~~yaTs~dp~~P--~~ws~~--qpl~~~~~~~~~~~~ID~~vI--~Dd~ 143 (303)
T cd08987 76 GYRVAPQVFYFAPQNKWYLIYQWW------PAAYSTNSDISNP--NGWSAP--QPLFSGTPNGSPGGWIDFWVI--CDDT 143 (303)
T ss_pred cccccCEEeeeccCCEEEEEEecC------ceEEEeCCCCCCC--CccCCC--cccccCcccCCCCCccceeEE--eCCC
Confidence 4678888752 4789999999951 2568899998877 467753 566653222234467899995 3688
Q ss_pred cEEEEEeeecCCceEEEEEEeC-C---CCC--CEEcccccccCCCCceeeeeeEEEecccCcccccccCCCCCeEEEEee
Q 012546 267 KWRLTIGSKIGKTGISLVYQTT-D---FKT--YELLDEYLHAVPGTGMWECVDFYPVAINGSVGLDTSATGPGIKHVLKA 340 (461)
Q Consensus 267 ~w~MviGa~~~~~G~v~lY~S~-D---l~~--W~~~~~l~~~~~~~gmwECPdlf~l~~~~~~~l~~s~~G~~~k~vl~~ 340 (461)
+.||.... ..| .+|+|+ . |-. .+.. .+..........|-|+.|++.+ +.+++|.+
T Consensus 144 ~~YLff~~---dnG--~iyra~~~~~nFp~~~~~~~-~~~~~~~~~~lfEa~~Vykv~G-------------~~~Ylmiv 204 (303)
T cd08987 144 NCYLFFSD---DNG--KLYRSSTTLGNFPNGGTETV-IIMSDSNKNNLFEASNVYKVKG-------------QNQYLLIV 204 (303)
T ss_pred CEEEEEec---CCC--eEEEEecchhhCCCCCCccE-EEecCCCccccceeeEEEEECC-------------CeEEEEEE
Confidence 88888743 234 467763 2 322 1111 1111111124799999999963 13778888
Q ss_pred eeCCCcceEEEEe-eecCCCCcccCC
Q 012546 341 SLDDTKVDHYAIG-TYNPANDKWTPD 365 (461)
Q Consensus 341 S~~~~~~~~Y~iG-~~d~~~~~f~p~ 365 (461)
+..+.....|+++ +=+--.+.|+|-
T Consensus 205 eA~g~~~~rYfrs~Ts~Sl~GpWt~~ 230 (303)
T cd08987 205 EAIGSDGGRYFRSWTATSLDGPWTPL 230 (303)
T ss_pred EecCCCCCCeEEEEEcCCCCCCceec
Confidence 7766544457777 223335678764
No 41
>cd08982 GH43_3 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=98.76 E-value=4.7e-07 Score=91.48 Aligned_cols=108 Identities=26% Similarity=0.434 Sum_probs=74.0
Q ss_pred cCCccceEECCEEEEEEEeCCCCCCCCCcEEEEEEecCCcCcccCceecCCCCcccCCCeEeeeEEEccCCcEEEEEccc
Q 012546 131 NDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMVPDQWYDINGVWTGSATILPDGQIVMLYTGS 210 (461)
Q Consensus 131 NDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~Pd~~~D~~Gv~SGSavv~~dG~~~~~YTG~ 210 (461)
-||. +++++|+|+||-... + +..+|+||+||+..+.++. ..++|..++.. .+|+++++|+..
T Consensus 4 ~DP~-i~~~~g~YY~~~T~~------~----~i~~S~DL~~W~~~g~~~~------~~~~WAP~i~~-~~g~~Y~~~~~~ 65 (295)
T cd08982 4 ADPV-VILFKGEYYLFASMS------G----GYWHSSDLIDWDFIPTNSL------PDEGYAPAVFV-YDGTLYYTASTY 65 (295)
T ss_pred CCCe-EEEECCEEEEEEeCC------C----CeEECCCcCCceECCcccC------CCCcCcCEEEE-ECCEEEEEEeCC
Confidence 6997 788899999886542 1 3689999999999987653 46899999864 689877666542
Q ss_pred CCCccceEEEEEecCCCCCCcceEEEcCCCceecCCCCCCCCCCCCCeeEeecCCCcEEEEEeee
Q 012546 211 TDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSK 275 (461)
Q Consensus 211 ~~~~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP~V~w~~~dG~w~MviGa~ 275 (461)
.+.+|+++|... -.|... .+ . ......||.+++ +.||+.||+.|..
T Consensus 66 ------~~~v~~s~~p~g---p~w~~~--~~----~---~~~~~IDp~vf~-DdDGk~Yl~~g~~ 111 (295)
T cd08982 66 ------NSRIYKTADPLS---GPWEEV--DK----S---FPPGLADPALFI-DDDGRLYLYYGCS 111 (295)
T ss_pred ------CceEEEeCCCCC---CCcccc--cc----c---cCCCccCCceEE-CCCCCEEEEEecC
Confidence 134677766521 235542 01 0 112457999954 5789999998753
No 42
>cd08995 GH32_Aec43_like Glycosyl hydrolase family 32. This glycosyl hydrolase family 32 (GH32) includes characterized as well as uncharacterized proteins. GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). GH32 family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an a
Probab=98.76 E-value=3e-07 Score=91.20 Aligned_cols=152 Identities=18% Similarity=0.152 Sum_probs=98.3
Q ss_pred cccccccccceeeeecCCCc-----ccCCccceEECCEEEEEEEeCCCCCCCCCcEEEEEEecCCcCcccCc--eecCCC
Q 012546 110 TNAMFTWQRTSFHFQPEKNW-----MNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLP--IAMVPD 182 (461)
Q Consensus 110 ~~~~~~w~Rp~fHf~P~~gw-----mNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p--~AL~Pd 182 (461)
|..+..|++-.--+.|+.++ +-.|+ +++.+|+|||||.-+... .......++|+|+|+++|+..+ +.+.+.
T Consensus 37 S~Dlv~W~~~~~al~~~~~~~d~~g~~sgs-~~~~~g~~~l~YTg~~~~-~~~~~~i~~A~S~D~~~w~k~~~~pv~~~~ 114 (280)
T cd08995 37 TKDLVNYEDHGEAIPRGGDEDDDDAIGTGS-VIKGEGTYHAFYTGHNLD-GKPKQVVMHATSDDLITWTKDPEFILIADG 114 (280)
T ss_pred ccCcCccEECcceecCCCCcccccCceEeE-EEeeCCEEEEEEEEECCC-CCCcEEEEEEECCCCCccEECCCCeecCCc
Confidence 45566786665556553222 23454 567789999999865322 1124568999999999999865 334333
Q ss_pred CcccCCCeEeeeEEEcc-CCcEEEEEcccCC----CccceEEEEEecCCCCCCcceEEEcCCCceecCCCCCCCCCCCCC
Q 012546 183 QWYDINGVWTGSATILP-DGQIVMLYTGSTD----KSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDP 257 (461)
Q Consensus 183 ~~~D~~Gv~SGSavv~~-dG~~~~~YTG~~~----~~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP 257 (461)
..++...+-...++.++ +|+++|+|.+... ...-.+.++.|+|+ .+|+.. .+++.+.. ...+--|
T Consensus 115 ~~~~~~~~rDP~Vf~~~~~g~y~m~~g~~~~~~~~~~~g~i~~~~S~Dl-----~~W~~~--~~~~~~~~---~~~~E~P 184 (280)
T cd08995 115 EGYEKNDWRDPFVFWNEEEGCYWMLLATRLLDGPYNRRGCIALFTSKDL-----KNWEYE--EPFYAPGL---YFMPECP 184 (280)
T ss_pred cccccCCccCCcEEEcCCCCeEEEEEEeccCCCCCCCCeEEEEEEeCCc-----Ccceec--CceecCCC---cceeecc
Confidence 34444455677776643 5999999987542 22345667888885 899975 45553321 1235668
Q ss_pred eeEeecCCCcEEEEEeee
Q 012546 258 TTAWAGPDGKWRLTIGSK 275 (461)
Q Consensus 258 ~V~w~~~dG~w~MviGa~ 275 (461)
.+ ++ .+|+|+|+++..
T Consensus 185 ~l-~~-~~g~~~L~~s~~ 200 (280)
T cd08995 185 DL-FK-MGDWWYLVYSEF 200 (280)
T ss_pred eE-EE-ECCEEEEEEEec
Confidence 88 43 689999999865
No 43
>cd09002 GH43_XYL_3 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended subs
Probab=98.72 E-value=1.4e-07 Score=94.32 Aligned_cols=122 Identities=18% Similarity=0.204 Sum_probs=85.4
Q ss_pred CcccCCccceEECCEEEEEEEeCCCCCCCCCcEEEEEEecCCcCcccCceecCCCCcccCCCeEeeeEEEccCCcEEEEE
Q 012546 128 NWMNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMVPDQWYDINGVWTGSATILPDGQIVMLY 207 (461)
Q Consensus 128 gwmNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~Pd~~~D~~Gv~SGSavv~~dG~~~~~Y 207 (461)
+..-||. +++.+|+|+|+..-.. + ...+...+|+||+||+..+.++... ..++|...+. ..+|+++|+|
T Consensus 13 ~~~~DP~-i~~~~~~yY~~~t~~~----~-~~gi~i~~S~DL~~W~~~g~~~~~~----~~~~WAP~i~-~~~gkyy~yy 81 (280)
T cd09002 13 GDYPDPS-ILRDGEDYYMTHSSFK----Y-TPGLVIWHSRDLVNWTPVGPALPEY----EGDVWAPDLC-KYDGRYYIYF 81 (280)
T ss_pred CCCCCCE-EEEECCEEEEEEcchh----c-CCCEEEEECCCcCCceEccccccCC----CCCEEcCeeE-EECCEEEEEE
Confidence 3445996 8888999999764211 1 1246788999999999988777542 3579999885 4899999999
Q ss_pred cccCCCccceEEEEEecCCCCCCcceEEEcCCCceecCCCCCCCCCCCCCeeEeecCCCcEEEEEee
Q 012546 208 TGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGS 274 (461)
Q Consensus 208 TG~~~~~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP~V~w~~~dG~w~MviGa 274 (461)
+.......+.+.+|++.+.. -.|++ |+.. ......||.+++ +.||++||+.+.
T Consensus 82 s~~~~~~~~~~~va~ad~p~----Gpw~~----~~~~-----~~~~~IDp~vf~-DddG~~Yl~~~~ 134 (280)
T cd09002 82 PAIPEGGNWTNMVIWADSPE----GPWSK----PIDL-----KIGGCIDPGHVV-DEDGNRYLFLSG 134 (280)
T ss_pred EeecCCCCceEEEEEECCCC----CCCcC----CEec-----CCCCccCCceEE-cCCCCEEEEECC
Confidence 98764444567888886653 34654 2211 112246999965 578999999863
No 44
>cd08994 GH43_like_2 Glycosyl hydrolase 43-like family consists of hypothetical proteins. This subfamily mostly contains uncharacterized proteins similar to glycosyl hydrolase family 43 (GH43) which includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, f
Probab=98.72 E-value=1e-07 Score=95.05 Aligned_cols=108 Identities=25% Similarity=0.334 Sum_probs=81.1
Q ss_pred cCCccceEECCEEEEEEEeCCCCC----CCCCcEEEEEEecC-CcCcccC-ceecCCCC-cccCCCeEeeeEEEccCCcE
Q 012546 131 NDPNGPLFYKGWYHLFYQYNPDSA----VWGNITWGHAVSAD-LIHWLYL-PIAMVPDQ-WYDINGVWTGSATILPDGQI 203 (461)
Q Consensus 131 NDPnG~~y~~G~YHLFYQ~nP~~~----~wG~~~WGHA~S~D-LvhW~~~-p~AL~Pd~-~~D~~Gv~SGSavv~~dG~~ 203 (461)
-+|. +++++|+|+|||..+.... ..++...|.|+|+| +-+|+.+ .++|.|.. .||..+++.++++..++|++
T Consensus 81 ~~P~-vi~~~g~yyl~Y~~~~~~~~~~~~~~~~~ig~a~s~~~~g~w~~~~~pvl~~~~~~~~~~~~~~p~v~~~~~g~~ 159 (291)
T cd08994 81 HNPT-IKRFDGKYYLYYIGNTDPGPRPGHRNNQRIGVAVSDSLDGPWKRSDQPILEPRPGGWDNLITSNPAVTRRPDGSY 159 (291)
T ss_pred cCCe-EEEECCEEEEEEEcccCCcccccCCCCceEEEEEeCCCCCCcEECCCceecCCCCccccccccCCCeEEeCCCCE
Confidence 3675 6778999999999764311 12356799999999 4699984 46677754 36888899999987558999
Q ss_pred EEEEcccCCC---ccceEEEEEecCCCCCCcceEEEcCCCcee
Q 012546 204 VMLYTGSTDK---SVQVQNLAYPADPSDPLLLDWVKYPGNPVL 243 (461)
Q Consensus 204 ~~~YTG~~~~---~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl 243 (461)
+|+|+|.... ..+.|++|+|.|.. ..|+|...+||+
T Consensus 160 ~m~y~g~~~~~~~~~~~~gla~s~d~~----g~~~~~~~~~v~ 198 (291)
T cd08994 160 LLVYKGGTYNPTKGNRKYGVAIADSPT----GPYTKVSGPPFI 198 (291)
T ss_pred EEEEeccccCCCCCcEEEEEEEeCCCC----CCCEECCCCccc
Confidence 9999998632 35678999998863 579998666664
No 45
>cd08978 GH_F Glycosyl hydrolase families 43 and 62 form CAZY clan GH-F. This glycosyl hydrolase clan F (according to carbohydrate-active enzymes database (CAZY)) includes family 43 (GH43) and 62 (GH62). GH43 includes enzymes with beta-xylosidase (EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanases (beta-xylanases) and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. GH62 includes enzymes characterized as arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Ma
Probab=98.61 E-value=1.4e-06 Score=84.75 Aligned_cols=156 Identities=17% Similarity=0.138 Sum_probs=96.0
Q ss_pred CCcccCCccceEECCEEEEEEEeCCCCCCCCCcEEEEEEecCCcCcccCceecCCCCcccCCCeEeeeEEEccCCcEEEE
Q 012546 127 KNWMNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMVPDQWYDINGVWTGSATILPDGQIVML 206 (461)
Q Consensus 127 ~gwmNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~Pd~~~D~~Gv~SGSavv~~dG~~~~~ 206 (461)
.+-+-+|. +++++|+|+|||..+..+ ......+.|+|+|+.+|........+ .....++..++++.++||+++|+
T Consensus 56 ~~~~waP~-v~~~~g~yyl~y~~~~~~--~~~~~i~~a~s~d~~g~~~~~~~~~~--~~~~~~~iDp~vf~d~dg~~yl~ 130 (271)
T cd08978 56 SGGLWAPE-VIYYEGKYYLYYSVSDFD--YNGSGIGVATSEDPTGPFEDKVIRPP--TSNNGNSIDPTVFKDDDGKYYLY 130 (271)
T ss_pred CCceeCCe-EEEECCEEEEEEEcccCC--CCcccEEEEECCCCCCCccccccCcC--ccCCCCccCcceEEcCCCCEEEE
Confidence 45677887 888999999999987542 23456899999999999765421111 11234678899988777999999
Q ss_pred EcccCCC-ccceEEEEEecCCCCCCcceEEEcCCCceecCCCCCCCCCCCCCeeEeecCCCcEEEEEeeecC--CceEEE
Q 012546 207 YTGSTDK-SVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKIG--KTGISL 283 (461)
Q Consensus 207 YTG~~~~-~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP~V~w~~~dG~w~MviGa~~~--~~G~v~ 283 (461)
|.+.... ....+.++.+.+. ..|.. ..+++..........+--|.+ ++ .+|+|+|++.+... ..-.+.
T Consensus 131 ~~~~~~~~~~~~i~~~~l~~~-----~~~~~--~~~~~~~~~~~~~~~~EgP~~-~k-~~g~yyl~ys~~~~~~~~y~~~ 201 (271)
T cd08978 131 YGSGDPGAGFGGIYISELTDD-----LTKPT--GPPVLSASSGNNNAVTEGPTI-FK-KNGYYYLTYSANGTGDYGYNIG 201 (271)
T ss_pred EecccCCCCCCcEEEEEECcc-----ccccc--CCceeeeeeccCCCceEccEE-EE-ECCEEEEEEEeCCCCCCCceEE
Confidence 9876421 1234556666553 22222 123221111111223457888 44 57999999876522 233666
Q ss_pred EEEeCCCC-CCEEc
Q 012546 284 VYQTTDFK-TYELL 296 (461)
Q Consensus 284 lY~S~Dl~-~W~~~ 296 (461)
+++|++.. -|+..
T Consensus 202 ~~~s~~~~Gp~~~~ 215 (271)
T cd08978 202 YATSDSIDGPYVKK 215 (271)
T ss_pred EEECCCCCCCcCcC
Confidence 77888763 35544
No 46
>cd08999 GH43_ABN_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-b
Probab=98.59 E-value=1.5e-06 Score=86.13 Aligned_cols=154 Identities=16% Similarity=0.150 Sum_probs=94.8
Q ss_pred ccCCccceEECCEEEEEEEeCCCCCCCCCcEEEEEEecCCc-CcccCce-ecC-CCCcccCCCeEeeeEEEccCCcEEEE
Q 012546 130 MNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLI-HWLYLPI-AMV-PDQWYDINGVWTGSATILPDGQIVML 206 (461)
Q Consensus 130 mNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLv-hW~~~p~-AL~-Pd~~~D~~Gv~SGSavv~~dG~~~~~ 206 (461)
+..|. +++++|+|||||.-+-.+ ..+...|+|+|+|.. .|+..+. .+. ++ +..+....++++++||+++|+
T Consensus 62 ~waP~-v~~~~g~y~~~y~~~~~~--~~~~~i~~a~s~~p~g~~~~~~~~~~~~~~---~~~~~~Dp~v~~d~dG~~Yl~ 135 (287)
T cd08999 62 FWAPD-VSYVNGKYVLYYSARDKG--SGGQCIGVATADSPLGPFTDHGKPPLCCPE---GEGGAIDPSFFTDTDGKRYLV 135 (287)
T ss_pred ccCce-EEEECCEEEEEEEeecCC--CCCEEEEEEECCCCCCCCccCCcceEecCC---CCCCccCCCeEECCCCCEEEE
Confidence 33554 788899999999876433 235678999999965 8987653 222 22 234567888887779999999
Q ss_pred EcccCCC--ccceEEEE-EecCCCCCCcceEEEcCCCceecCCCCCCCCCCCCCeeEeecCCCcEEEEEeeec--CC--c
Q 012546 207 YTGSTDK--SVQVQNLA-YPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKI--GK--T 279 (461)
Q Consensus 207 YTG~~~~--~~q~q~lA-~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP~V~w~~~dG~w~MviGa~~--~~--~ 279 (461)
|.+.... ..+.+.++ .+.|+ .+|+... ..++.+........+--|.++ + .+|+|+|++.+.. .. .
T Consensus 136 ~~~~~~~~~~~~~i~~~~ls~d~-----~~~~~~~-~~i~~~~~~~~~~~~EgP~i~-k-~~g~yyl~~S~~~~~~~~~~ 207 (287)
T cd08999 136 WKSDGNSIGKPTPIYLQELSADG-----LTLTGEP-VRLLRNDEDWEGPLVEAPYLV-K-RGGYYYLFYSAGGCCSGAST 207 (287)
T ss_pred EeccCCCCCCCceEEEEEeCCCC-----ccccCCc-EeeecccccccCCceEeeEEE-E-ECCEEEEEEEcCCccCCCCC
Confidence 9764321 11223343 45453 5665421 223332222222334568884 4 5899999997642 11 2
Q ss_pred eEEEEEEeCCCC-CCEEcc
Q 012546 280 GISLVYQTTDFK-TYELLD 297 (461)
Q Consensus 280 G~v~lY~S~Dl~-~W~~~~ 297 (461)
=.+.+++|+|+. .|+..+
T Consensus 208 y~i~~~~s~~~~Gpw~~~~ 226 (287)
T cd08999 208 YAVGVARSKSLLGPYVKAP 226 (287)
T ss_pred EEEEEEEeCCCcCCcCCCC
Confidence 256778999976 787654
No 47
>cd08772 GH43_62_32_68 Glycosyl hydrolase families: GH43, GH62, GH32, GH68. Members of the glycosyl hydrolase families 32, 43, 62 and 68 (GH32, GH43, GH62, GH68) all possess 5-bladed beta-propeller domains and comprise clans F and J, as classified by the carbohydrate-active enzymes database (CAZY). Clan F consists of families GH43 and GH62. GH43 includes beta-xylosidases, beta-xylanases, alpha-L-arabinases, and alpha-L-arabinofuranosidases, using aryl-glycosides as substrates, while family GH62 contains alpha-L-arabinofuranosidases (EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose sidechains from xylans. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Clan J consists of families GH32 and GH68. GH32
Probab=98.50 E-value=3.3e-06 Score=82.22 Aligned_cols=157 Identities=17% Similarity=0.151 Sum_probs=98.6
Q ss_pred CcccCCccceEEC-CEEEEEEEeCCCCCCCCCcEEEEEEecCCcC-cccCc-eecCCCC--cccCCCeEeeeEEEccCCc
Q 012546 128 NWMNDPNGPLFYK-GWYHLFYQYNPDSAVWGNITWGHAVSADLIH-WLYLP-IAMVPDQ--WYDINGVWTGSATILPDGQ 202 (461)
Q Consensus 128 gwmNDPnG~~y~~-G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvh-W~~~p-~AL~Pd~--~~D~~Gv~SGSavv~~dG~ 202 (461)
+-+-.|. +++++ |+|+|||..... ..+....+.|+|+|+.. |+... ..+.+.. ..+...+.+++++.++||+
T Consensus 58 ~~~wap~-v~~~~~g~~~l~yt~~~~--~~~~~~i~~a~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~v~~d~dG~ 134 (286)
T cd08772 58 GGIWAPS-IVYIENGKFYLYYTDVSF--TKNQQTIGVATAEDGNGPWTDYIGGPVLPDNPPAADVSNFRDPFVFEDDDGK 134 (286)
T ss_pred CcEecce-EEEcCCCCEEEEEEeecC--CCCceeEEEEEcCCCCCCCccccccccccCCCCccccccccCCeEEEcCCCC
Confidence 3455676 67777 999999987543 22356789999999876 45432 1122221 2234467889998876799
Q ss_pred EEEEEcccCCCccceEEEEEecCCCCCCcceEEEcCCCceecCCCCCCCCCCCCCeeEeecCCCcEEEEEeeec----CC
Q 012546 203 IVMLYTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKI----GK 278 (461)
Q Consensus 203 ~~~~YTG~~~~~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP~V~w~~~dG~w~MviGa~~----~~ 278 (461)
++|+|.+........+.+|.++|. .+|++....+++.... ....+--|.++ + .+|+|+|++.+.. +.
T Consensus 135 ~y~~~~~~~~~~~~~i~~~~s~d~-----~~w~~~~~~~~~~~~~--~~~~~E~P~~~-~-~~g~~yL~~s~~~~~~~~~ 205 (286)
T cd08772 135 WYLVFGSGDHHNFGGIFLYESDDD-----TTWKKGSAELLISEGE--GGKQIEGPGLL-K-KNGKYYLFYSINGTGRVDS 205 (286)
T ss_pred EEEEEccccCCCCCeEEEEEcCCC-----CCcccccceeeEeecc--CCCceeccEEE-E-ECCEEEEEEEcCCCcCCCC
Confidence 999998765433456788999886 6888753222222111 22355679984 3 5799999997653 22
Q ss_pred ceEEEEEEeCC-CCCCEEc
Q 012546 279 TGISLVYQTTD-FKTYELL 296 (461)
Q Consensus 279 ~G~v~lY~S~D-l~~W~~~ 296 (461)
.-.+.+++|++ .-.|+..
T Consensus 206 ~y~~~~~~~~~~~g~~~~~ 224 (286)
T cd08772 206 TYSIGYARSESDTGPYVPK 224 (286)
T ss_pred CcceEEEEccCCCCCcccC
Confidence 22455666755 3445443
No 48
>cd08983 GH43_4 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=98.46 E-value=1.3e-06 Score=87.40 Aligned_cols=79 Identities=24% Similarity=0.391 Sum_probs=57.1
Q ss_pred CCCceecCCCCCCCCCCCCCeeEeecCCCcEEEEEeeec-----CCceEEEEEEeCCCCCCEEcccccccCCCCc-eeee
Q 012546 238 PGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKI-----GKTGISLVYQTTDFKTYELLDEYLHAVPGTG-MWEC 311 (461)
Q Consensus 238 ~~nPVl~~p~g~~~~dfRDP~V~w~~~dG~w~MviGa~~-----~~~G~v~lY~S~Dl~~W~~~~~l~~~~~~~g-mwEC 311 (461)
.++|||.+.- +...+|||+|++...+|+|+|+..... .....|.+|+|+||++|+..+.++...+..+ +| |
T Consensus 4 ~~~pvl~~~~--g~~~~rDP~I~r~~~~g~yy~~~T~~~~~~~~~~~~~i~i~~S~DLv~W~~~~~~~~~~~~~~~~W-A 80 (276)
T cd08983 4 NGNPVLTSTA--GTKGLRDPFILRSHEGGKYYMIATDLKITGQTNGSQYIVVWESTDLVNWTFQRLVKVNPPNAGNTW-A 80 (276)
T ss_pred CCceEEeCCc--CCCCccCCeEEEcCCCCEEEEEEEecCcCCcccCCCeEEEEECCcccCCcccceeecCCCCcCcEe-C
Confidence 4689998643 468999999975436889999876532 1223578999999999999887653333334 67 9
Q ss_pred eeEEEecc
Q 012546 312 VDFYPVAI 319 (461)
Q Consensus 312 Pdlf~l~~ 319 (461)
|+++....
T Consensus 81 Pev~~d~~ 88 (276)
T cd08983 81 PEAFWDAE 88 (276)
T ss_pred ccceEcCC
Confidence 99998853
No 49
>cd08991 GH43_bXyl_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=98.46 E-value=7.4e-06 Score=81.71 Aligned_cols=154 Identities=15% Similarity=0.144 Sum_probs=89.6
Q ss_pred cccCCccceEECCEEEEEEEeCCCCCCCCCcEEEEEEecCCc-CcccCceecCCCCcccCCCeEeeeEEEccCCcEEEEE
Q 012546 129 WMNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLI-HWLYLPIAMVPDQWYDINGVWTGSATILPDGQIVMLY 207 (461)
Q Consensus 129 wmNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLv-hW~~~p~AL~Pd~~~D~~Gv~SGSavv~~dG~~~~~Y 207 (461)
.+-.|. +++.+|+|+|||...... ......++|+|+|.. .|+..+..+.+.. ...+.++++.++||+++|+|
T Consensus 54 ~~waP~-v~~~~g~yyl~ys~~~~~--~~~~~i~~a~s~~p~gp~~~~~~~~~~~~----~~~iD~~vf~d~dG~~yl~~ 126 (294)
T cd08991 54 GFWAPE-VYYYNGKFYMYYSANDRD--EKTEHIGVAVSDSPLGPFRDIKKPPIDFE----PKSIDAHPFIDDDGKPYLYY 126 (294)
T ss_pred cEEccE-EEEECCEEEEEEEeccCC--CCcceEEEEEeCCCCCCCCcCCCCcccCC----CcccCCceEECCCCCEEEEE
Confidence 344676 888999999999866432 134678999999977 6877653333321 34567888887789999999
Q ss_pred cccCCCc--cceEEEEEecCCCCCCcceEEEcCC---CceecC-------CCC----CCCCCCCCCeeEeecCCCcEEEE
Q 012546 208 TGSTDKS--VQVQNLAYPADPSDPLLLDWVKYPG---NPVLVP-------PRH----IGPKDFRDPTTAWAGPDGKWRLT 271 (461)
Q Consensus 208 TG~~~~~--~q~q~lA~S~D~~d~lL~~W~K~~~---nPVl~~-------p~g----~~~~dfRDP~V~w~~~dG~w~Mv 271 (461)
+...... ...+..+.+.|. .+|..... .++..+ +.. .+..-.--|.++ + .+|+|+|+
T Consensus 127 ~~~~~~~~~~~i~~~~l~~d~-----~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~EgP~~~-k-~~g~yyl~ 199 (294)
T cd08991 127 SRNNYGNRVSDIYGTELVDDK-----LSIKTELVGPPIPVSAPGIDEIFERWRFGEGKDWRTNEGPTVL-K-HNGRYYLT 199 (294)
T ss_pred EecCCCCcccceEEEEEccce-----eeeccceeeccccccccccccccccccccccccCceeeCcEEE-E-ECCEEEEE
Confidence 8654321 123344556553 44442111 122111 000 001112346663 3 57999999
Q ss_pred Eeeec-CCce-EEEEEEeCC-CCCCEEc
Q 012546 272 IGSKI-GKTG-ISLVYQTTD-FKTYELL 296 (461)
Q Consensus 272 iGa~~-~~~G-~v~lY~S~D-l~~W~~~ 296 (461)
..+.. .... .+.+.+|++ +-.|+..
T Consensus 200 ys~~~~~~~~y~~~~a~s~~~~gp~~~~ 227 (294)
T cd08991 200 YSANHYENEDYGVGYATADSPLGPWTKY 227 (294)
T ss_pred EECCCCCCCCceEEEEEcCCCCCCcEec
Confidence 86532 1111 455677876 4678764
No 50
>cd08990 GH43_AXH_like Glycosyl hydrolase family 43, includes arabinoxylan arabinofuranohydrolase, beta-xylosidase, endo-1,4-beta-xylanase, alpha-L-arabinofuranosidase. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), endo-alpha-L-arabinanase as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of
Probab=98.42 E-value=8e-06 Score=80.91 Aligned_cols=152 Identities=15% Similarity=0.059 Sum_probs=93.0
Q ss_pred CcccCCccceEECCEEEEEEEeCCCCCCCCCcEEEEEEecCCc-CcccCce-ecCCCCcccCCCeEeeeEEEccCCcEEE
Q 012546 128 NWMNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLI-HWLYLPI-AMVPDQWYDINGVWTGSATILPDGQIVM 205 (461)
Q Consensus 128 gwmNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLv-hW~~~p~-AL~Pd~~~D~~Gv~SGSavv~~dG~~~~ 205 (461)
+-+--|. +++++|+|||||..... .+....|+|+|+|.. .|+.... .+.+ ...+.....+.+++++.||+++|
T Consensus 62 ~~~wAP~-i~~~~g~yy~yy~~~~~---~~~~~igva~s~~p~Gpw~~~~~~~~~~-~~~~~~~~iDp~vf~d~dG~~yl 136 (274)
T cd08990 62 GQAWAPD-VVEKNGKYYLYFPARDK---DGGFAIGVAVSDSPAGPFKDAGGPILIT-TPSGGWYSIDPAVFIDDDGQAYL 136 (274)
T ss_pred CCcCcCe-EEEECCEEEEEEEeecC---CCceEEEEEEeCCCCCCCCCCCCccccc-cCCCCCCccCCcEEECCCCCEEE
Confidence 4455676 78899999999987643 234678999999976 7998763 3332 22234456788888877899999
Q ss_pred EEcccCCCccceEEEE-EecCCCCCCcceEEEcCCCceecCCC---CCCCCCCCCCeeEeecCCCcEEEEEeeecCCceE
Q 012546 206 LYTGSTDKSVQVQNLA-YPADPSDPLLLDWVKYPGNPVLVPPR---HIGPKDFRDPTTAWAGPDGKWRLTIGSKIGKTGI 281 (461)
Q Consensus 206 ~YTG~~~~~~q~q~lA-~S~D~~d~lL~~W~K~~~nPVl~~p~---g~~~~dfRDP~V~w~~~dG~w~MviGa~~~~~G~ 281 (461)
+|.+. +.+.++ .+.|. .+|+.. ..++..+. .....-+-=|.+ ++ .+|+|||++.+.. ...
T Consensus 137 ~~~~~-----~~~~~~~l~~d~-----~~~~~~--~~~i~~~~~~~~~~~~~~EgP~i-~k-~~G~YYl~yS~~~--~~~ 200 (274)
T cd08990 137 YWGGG-----LGLRVAKLKPDM-----LSLKGE--PVEIVITDGAGDELRRFFEAPWV-HK-RNGTYYLSYSTGD--PEE 200 (274)
T ss_pred EECCc-----CCEEEEEeCccc-----cccCCC--cEEEEeccccCCCCCCcccceeE-EE-ECCEEEEEEECCC--CcE
Confidence 99864 223344 34443 566532 22232110 001111234777 43 6899999987642 345
Q ss_pred EEEEEeCCCC-CCEEccccc
Q 012546 282 SLVYQTTDFK-TYELLDEYL 300 (461)
Q Consensus 282 v~lY~S~Dl~-~W~~~~~l~ 300 (461)
+.+.+|+++. -|+..+.++
T Consensus 201 ~~~a~s~~p~GP~~~~g~~~ 220 (274)
T cd08990 201 IAYATSDSPLGPFTYRGVIL 220 (274)
T ss_pred EEEEEcCCCCCCcccCcEEe
Confidence 6666787764 466554443
No 51
>cd08986 GH43_7 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=98.42 E-value=2.8e-06 Score=84.52 Aligned_cols=64 Identities=19% Similarity=0.174 Sum_probs=45.8
Q ss_pred CCCCeeEeecCCCcEEEEEeeecC---------CceEEEEEEeCCCCCCEEcccccccCC--------------CCceee
Q 012546 254 FRDPTTAWAGPDGKWRLTIGSKIG---------KTGISLVYQTTDFKTYELLDEYLHAVP--------------GTGMWE 310 (461)
Q Consensus 254 fRDP~V~w~~~dG~w~MviGa~~~---------~~G~v~lY~S~Dl~~W~~~~~l~~~~~--------------~~gmwE 310 (461)
+|||+|+ +..+|.|||+..+... ..+.+.+|+|+||++|+..+.++...+ ..+..+
T Consensus 2 ~rDP~v~-~~~dg~Yy~~~T~~~~~~~~~~~~~~~~gi~i~~S~DLv~W~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~W 80 (269)
T cd08986 2 IRDTYVT-LGPDGYYYLTGTTPPPGLPFEDCSIVNDGIPLWRSKDLKKWESLGLIWDREKDATWQSYWIDEDDWYKNAVW 80 (269)
T ss_pred CcCCeEE-ecCCCcEEEEEccCCccccccccccCCCceEEEeCccccCccccCcccccCCcccccccccccCCcccCCcC
Confidence 7999995 4467889888765421 124578999999999999888764321 123345
Q ss_pred eeeEEEec
Q 012546 311 CVDFYPVA 318 (461)
Q Consensus 311 CPdlf~l~ 318 (461)
||+++.+.
T Consensus 81 AP~v~~~~ 88 (269)
T cd08986 81 APELHYIK 88 (269)
T ss_pred CceEEEEC
Confidence 99999885
No 52
>PF04041 DUF377: Domain of unknown function (DUF377); InterPro: IPR007184 Glycosidases or glycosyl hydrolases are a big and widespread family of enzymes that hydrolyse the glycosidic bonds between carbohydrates or between a carbohydrate and an aglycone moiety. On the basis of sequence and structural similarity, the glycoside hydrolase family belongs to the beta-fructosidase (furanosidase) superfamily of glycosyl hydrolases. This leads to the prediction that proteins of this family have a glycosidase (glycoside hydrolase) activity and, most probably, act on a furanoside residue (fructose, arabinose and ribose). Crystal structure from Thermotoga maritima a member of this family, determined to high-resolution by Structural Genomics initiatives, reveals a five-bladed beta-propeller fold with three acidic residues forming the active site.; PDB: 1VKD_A 3TAW_A 3QC2_B 3R67_B.
Probab=98.41 E-value=1e-06 Score=89.84 Aligned_cols=109 Identities=20% Similarity=0.288 Sum_probs=82.0
Q ss_pred cCCCeEeeeEEEccCC-cEEEEEcccCCCccc-eEEEEEecCCCCCCcceEEEcCCCceecCCCCCCCCCCCCCeeEeec
Q 012546 186 DINGVWTGSATILPDG-QIVMLYTGSTDKSVQ-VQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAG 263 (461)
Q Consensus 186 D~~Gv~SGSavv~~dG-~~~~~YTG~~~~~~q-~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP~V~w~~ 263 (461)
....||-..|++..++ +++|+|.+....... .+++|.|.|+ ++|++. .+||+.|...++....-||.|..
T Consensus 28 ~~~~vfNpgai~~~~~~R~~l~yr~~~~~~~~~~iglA~S~DG-----i~f~~~-~~pil~P~~~~e~~GvEDPRVt~-- 99 (312)
T PF04041_consen 28 EPNAVFNPGAIVFDGGLRVYLLYRAYGSDIGSSRIGLARSDDG-----IHFERD-PEPILYPDTDYEEWGVEDPRVTK-- 99 (312)
T ss_dssp TSSEEEEEEEEEETTE--EEEEEEEEESSSSEEEEEEEEESSS-----SS-EE--SS-SBEE-SSTTHTEEEEEEEEE--
T ss_pred CcceEEcCcEEEECCeeEEEEEEEeECCCCceeEEEEEEccCC-----cCceEC-CCCEEccCCCCcccCccceeEEE--
Confidence 3567999999764444 289999887655444 7899999997 899986 58999876656556788999964
Q ss_pred CCCcEEEEEeeecCCceEEEEEEeCCCCCCEEccccccc
Q 012546 264 PDGKWRLTIGSKIGKTGISLVYQTTDFKTYELLDEYLHA 302 (461)
Q Consensus 264 ~dG~w~MviGa~~~~~G~v~lY~S~Dl~~W~~~~~l~~~ 302 (461)
.+++|+|++.+.......+.+.+|+||++|+..+..+..
T Consensus 100 i~d~yymtYta~~~~~~~~~la~s~D~~~~~r~g~~~~~ 138 (312)
T PF04041_consen 100 IDDTYYMTYTAYSGKGPRIGLATSKDFKHWERHGKIFPP 138 (312)
T ss_dssp ETTEEEEEEEEEESSSEEEEEEEESSSSSEEEEECTTTT
T ss_pred ECCEEEEEEEEecCCCcccceEEccchHhhEEeccccCc
Confidence 478999999887655567888999999999999876543
No 53
>cd08996 GH32_B_Fructosidase Glycosyl hydrolase family 32, beta-fructosidases. Glycosyl hydrolase family GH32 cleaves sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). This family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catal
Probab=98.39 E-value=3.7e-06 Score=84.03 Aligned_cols=154 Identities=17% Similarity=0.143 Sum_probs=97.6
Q ss_pred CcccccccccceeeeecCCCc----ccCCccceEEC-CEEEEEEEeCCCCCCCCCcEEEEEEec-CCcCcccCc--eecC
Q 012546 109 WTNAMFTWQRTSFHFQPEKNW----MNDPNGPLFYK-GWYHLFYQYNPDSAVWGNITWGHAVSA-DLIHWLYLP--IAMV 180 (461)
Q Consensus 109 ~~~~~~~w~Rp~fHf~P~~gw----mNDPnG~~y~~-G~YHLFYQ~nP~~~~wG~~~WGHA~S~-DLvhW~~~p--~AL~ 180 (461)
-|..++.|++..-=+.|...+ +-.++ ++.++ |+|+|||.-+......+...-++|+|+ |+++|+..+ +.+.
T Consensus 38 ~S~Dlv~W~~~~~al~p~~~~d~~g~~sGs-av~~~~g~~~~~YTg~~~~~~~~~~~~~lA~S~ddg~~w~k~~~~~~~~ 116 (298)
T cd08996 38 TSKDLVHWEHLPVALAPDDPYDSGGCFSGS-AVVDDNGKLVLFYTGNVKLDGGRRQTQCLAYSTDDGRTFTKYEGNPVIP 116 (298)
T ss_pred EecCccceeECCcccCCCCcccCCeEEeCe-EEEcCCCcEEEEEeceeCCCCCceEEEEEEEEcCCCCEEEECCCCceEc
Confidence 355567786544334442222 12233 34556 999999986542211234667899999 899999876 2232
Q ss_pred CCCcccCCCeEeeeEEEccCCcEEEEEcccCCCccceEEEEEecCCCCCCcceEEEcCCCceecCCCCCCCCCCCCCeeE
Q 012546 181 PDQWYDINGVWTGSATILPDGQIVMLYTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTA 260 (461)
Q Consensus 181 Pd~~~D~~Gv~SGSavv~~dG~~~~~YTG~~~~~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP~V~ 260 (461)
| ...+..++.+..++. .+|+++|+|++...+....+.++.|+|+ ++|++. .++..... .....|--|.++
T Consensus 117 ~-~~~~~~~~RDP~V~~-~~g~~~m~~g~~~~~~~~~i~ly~S~Dl-----~~W~~~--~~~~~~~~-~~~~~~EcP~l~ 186 (298)
T cd08996 117 P-PDGYTTHFRDPKVFW-HDGKWYMVLGAGTEDGTGRILLYRSDDL-----KNWEYL--GELLTSLG-DFGYMWECPDLF 186 (298)
T ss_pred C-CCCCCCcccCCeEEe-ECCEEEEEEEEEecCCCcEEEEEECCCC-----CCCEEc--ceecccCC-CccceEeCCcEE
Confidence 2 223445667888875 5699999999876544456788999886 899985 34422211 122456779884
Q ss_pred eecCC--CcEEEEEeee
Q 012546 261 WAGPD--GKWRLTIGSK 275 (461)
Q Consensus 261 w~~~d--G~w~MviGa~ 275 (461)
+ -+ ++|+|+++..
T Consensus 187 -~-l~~~~k~vL~~s~~ 201 (298)
T cd08996 187 -P-LDVEGKWVLIFSPQ 201 (298)
T ss_pred -E-ECCCCeEEEEECCC
Confidence 3 46 9999999865
No 54
>cd08998 GH43_ABN_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-b
Probab=98.34 E-value=2e-05 Score=78.57 Aligned_cols=152 Identities=17% Similarity=0.158 Sum_probs=90.1
Q ss_pred cccCCccceEECCEEEEEEEeCCCCCCCCCcEEEEEEecCC--cCcccCceecCCCCcccCCCeEeeeEEEccCCcEEEE
Q 012546 129 WMNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADL--IHWLYLPIAMVPDQWYDINGVWTGSATILPDGQIVML 206 (461)
Q Consensus 129 wmNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DL--vhW~~~p~AL~Pd~~~D~~Gv~SGSavv~~dG~~~~~ 206 (461)
-+..|. +++.+|+|||||..+..+. ++...++|+|+|+ -.|+..++++.++...+......++++.++||+++|+
T Consensus 57 ~~wAP~-v~~~~g~yyl~ys~~~~~~--~~~~i~va~s~~~~~gpw~~~~~v~~~~~~~~~~~~iDp~vf~d~dG~~Yl~ 133 (288)
T cd08998 57 NLWAPD-VIYLNGKYYLYYSVSTFGS--NRSAIGLATSDTLPDGPWTDHGIVIESGPGRDDPNAIDPNVFYDEDGKLWLS 133 (288)
T ss_pred CccCCe-EEEECCEEEEEEEEEeCCC--CceEEEEEEeCCCCCCCCEEcceeeecCCCCCCcccccCCEEEcCCCCEEEE
Confidence 345665 7788999999998764321 2456899999998 7999877666554332344577889988779999999
Q ss_pred EcccCCCccceEEEE-EecCCCCCCcceEEEcCCCceecCCCCCCCCCCCCCeeEeecCCCcEEEEEeeec-C---Cce-
Q 012546 207 YTGSTDKSVQVQNLA-YPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKI-G---KTG- 280 (461)
Q Consensus 207 YTG~~~~~~q~q~lA-~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP~V~w~~~dG~w~MviGa~~-~---~~G- 280 (461)
|.+... .+.++ ...|.+.+ ..+... ...++..+.. ..-.-.|++ ++ .+|+|||++.+.. . ..+
T Consensus 134 ~~~~~~----~i~~~~l~~~~~~~--~~~~~~-~~~i~~~~~~--~~~~Egp~~-~k-~~g~YYl~~S~~~~~~~~~~~y 202 (288)
T cd08998 134 FGSFWG----GIFLVELDPKTGKP--LYPGGY-GYNIAGRPRG--HGAIEAPYI-IY-RGGYYYLFVSYGGCCAGEDSTY 202 (288)
T ss_pred eeeccC----CEEEEEeCcccCCc--cCCCCc-ceEEeccCCC--CCceeeeEE-EE-eCCEEEEEEEcchhcCCCCCce
Confidence 975321 12233 22332211 222110 0112221111 112346888 44 6899999986431 1 122
Q ss_pred EEEEEEeCCCC-CCE
Q 012546 281 ISLVYQTTDFK-TYE 294 (461)
Q Consensus 281 ~v~lY~S~Dl~-~W~ 294 (461)
++.+++|+++. -|+
T Consensus 203 ~v~~~~s~~~~GP~~ 217 (288)
T cd08998 203 NIRVGRSKSITGPYV 217 (288)
T ss_pred EEEEEEcCCCCCCcC
Confidence 56788998753 354
No 55
>PF04616 Glyco_hydro_43: Glycosyl hydrolases family 43; InterPro: IPR006710 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 43 GH43 from CAZY includes enzymes with the following activities, beta-xylosidase (3.2.1.37 from EC), alpha-L-arabinofuranosidase (3.2.1.55 from EC); arabinanase (3.2.1.99 from EC), and xylanase (3.2.1.8 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3KST_B 1UV4_A 1YRZ_A 1YIF_B 3NQH_A 3QED_D 3QEE_A 3QEF_B 1YI7_A 1Y7B_B ....
Probab=98.13 E-value=4.3e-05 Score=75.27 Aligned_cols=172 Identities=13% Similarity=0.136 Sum_probs=101.2
Q ss_pred cccccccccceeeeecCCCcccC-------CccceEECCEEEEEEEeCCCCCCCCCcEEEEEEecCCc-CcccCceecCC
Q 012546 110 TNAMFTWQRTSFHFQPEKNWMND-------PNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLI-HWLYLPIAMVP 181 (461)
Q Consensus 110 ~~~~~~w~Rp~fHf~P~~gwmND-------PnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLv-hW~~~p~AL~P 181 (461)
+..+..|+.....+.+...+... |. +++.+|+|||||...... .....+.|+|++.. .|+.....+.+
T Consensus 40 S~DL~~W~~~g~~~~~~~~~~~~~~~~~WAP~-i~~~~g~yy~y~~~~~~~---~~~~~~va~a~~~~Gp~~~~~~~~~~ 115 (286)
T PF04616_consen 40 SKDLVNWTDAGNVLPPPPDWDWANNGNIWAPE-IHYINGKYYMYYSDSGGD---AGSGIGVATADSPDGPWTDPGKIPIP 115 (286)
T ss_dssp ESSSSSEEEEEECESSTTTTSTTTSETTEEEE-EEEETTEEEEEEEEESTS---TTEEEEEEEESSTTS-EEEEEEEEEE
T ss_pred CCCCcccccceeeecccccccccccccccCCe-EEEcCCeEEEEEEccCCC---CCcceeEEEeCCcccccccccceeec
Confidence 34566787777777665444322 43 677899999999922211 23558899999986 89877644333
Q ss_pred CCcccCCCeEeeeEEEccCCcEEEEEcccCCC-ccceEEEEEecCCCCCCcceEEEcCCCceecCCCCCCCCCCCCCeeE
Q 012546 182 DQWYDINGVWTGSATILPDGQIVMLYTGSTDK-SVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTA 260 (461)
Q Consensus 182 d~~~D~~Gv~SGSavv~~dG~~~~~YTG~~~~-~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP~V~ 260 (461)
...+..+++++++||+.+|+|.+.... ..+.+.+|...+.. .++.......+..........-.--|++
T Consensus 116 -----~~~~iD~~vf~d~dG~~Yl~~~~~~~~~~~~~i~~~~l~~d~----~~~~~~~~~~~~~~~~~~~~~~~Egp~~- 185 (286)
T PF04616_consen 116 -----GGNSIDPSVFVDDDGKYYLYYGSWDNGDPGGGIYIAELDPDG----TSLTGEPVVVIFPGDEGWDGGVVEGPFV- 185 (286)
T ss_dssp -----SSSSSSEEEEEETTSEEEEEEEESTTTSSEEEEEEEEEETTT----SSEEEEECEEEEEESGSSTTTBEEEEEE-
T ss_pred -----cccccCceEEEecCCCcEEeCcccCCCccceeEEeecccCcc----ccccCcccccccccccccCCccccceEE-
Confidence 345678889888789999999986543 23344454433321 3444322122222110111112233777
Q ss_pred eecCCCcEEEEEeeec-CCceEEEEEEeCCCCC-CEEc
Q 012546 261 WAGPDGKWRLTIGSKI-GKTGISLVYQTTDFKT-YELL 296 (461)
Q Consensus 261 w~~~dG~w~MviGa~~-~~~G~v~lY~S~Dl~~-W~~~ 296 (461)
++ .+|+|||++.+.. ...=.+.+++|+|+.. |+..
T Consensus 186 ~k-~~g~yYl~~s~~~~~~~y~v~~~~s~~~~gp~~~~ 222 (286)
T PF04616_consen 186 FK-HGGKYYLFYSAGGTGSPYQVGYARSDSPLGPWEWK 222 (286)
T ss_dssp EE-ETTEEEEEEEESGSSTTTEEEEEEESSTTSGGEET
T ss_pred EE-cCCCEEEEEeccCCCCCceEEEeeccCCCCceeec
Confidence 44 6899999987652 2112566789999865 5544
No 56
>cd08989 GH43_XYL Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended
Probab=98.07 E-value=6.3e-05 Score=74.79 Aligned_cols=68 Identities=19% Similarity=0.302 Sum_probs=49.1
Q ss_pred CceecCCCCCCCCCCCCCeeEeecCCCcEEEEEeeecCCceEEEEEEeCCCCCCEEcccccccC---------CCCceee
Q 012546 240 NPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKIGKTGISLVYQTTDFKTYELLDEYLHAV---------PGTGMWE 310 (461)
Q Consensus 240 nPVl~~p~g~~~~dfRDP~V~w~~~dG~w~MviGa~~~~~G~v~lY~S~Dl~~W~~~~~l~~~~---------~~~gmwE 310 (461)
||||. .++.||.|+. .++.|||+.++.....| +.+|+|+||.+|+..+..+... ...++|
T Consensus 1 NPvi~-------~~~~DP~ii~--~~~~yY~~~t~~~~~~g-~~~~~S~DL~~W~~~g~~~~~~~~~~~~~~~~~~~~W- 69 (269)
T cd08989 1 NPILK-------GDNPDPSIIR--AGDDYYMASSTFEWFPG-VQIHHSTDLVNWHLIGHPLDRLEDLDMKGNPYSGGIW- 69 (269)
T ss_pred CCcCC-------CCCCCCcEEE--ECCeEEEEECccccCCC-cEEEECCccCCCEEccccccCccccccccCCCCCcEE-
Confidence 67763 3678999953 57899999765322234 6789999999999988776431 122478
Q ss_pred eeeEEEec
Q 012546 311 CVDFYPVA 318 (461)
Q Consensus 311 CPdlf~l~ 318 (461)
||+++...
T Consensus 70 AP~v~~~~ 77 (269)
T cd08989 70 APCLSYYD 77 (269)
T ss_pred cceEEEEC
Confidence 99999874
No 57
>cd08981 GH43_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=98.07 E-value=5.6e-05 Score=76.20 Aligned_cols=67 Identities=15% Similarity=0.060 Sum_probs=47.9
Q ss_pred CCCCCCeeEeecCCCcEEEEEeeecCC----ceEEEEEEeCCCCCCEEcccccccCC---CCceeeeeeEEEec
Q 012546 252 KDFRDPTTAWAGPDGKWRLTIGSKIGK----TGISLVYQTTDFKTYELLDEYLHAVP---GTGMWECVDFYPVA 318 (461)
Q Consensus 252 ~dfRDP~V~w~~~dG~w~MviGa~~~~----~G~v~lY~S~Dl~~W~~~~~l~~~~~---~~gmwECPdlf~l~ 318 (461)
..+|||+|++.+.+|+|||+..+.... ...+.+|+|+||++|+..+.++.... ......+|+++...
T Consensus 4 ~~~~DP~v~~~~~~g~yYl~~T~~~~~~~~~~~gi~v~~S~DLv~W~~~g~~~~~~~~~~~~~~~WAP~v~~~~ 77 (291)
T cd08981 4 IRIRDPFILADPETGTYYLYGTTDPNIWGGEGTGFDVYKSKDLKDWEGPYPVFRPPDDFWADDNFWAPEVHEYK 77 (291)
T ss_pred ccccCCEEEEECCCCEEEEEEecCccccccCCCcEEEEECCChhcccccceeeccCCCcCccccccCCeeeeeC
Confidence 358999997655689999997654211 12368999999999999888774322 12346789988764
No 58
>TIGR01322 scrB_fam sucrose-6-phosphate hydrolase.
Probab=98.05 E-value=5.4e-05 Score=80.72 Aligned_cols=155 Identities=14% Similarity=0.125 Sum_probs=92.9
Q ss_pred cccccccccceeeeecCCCc----ccCCccceEECCEEEEEEEeCCCCCCCC-CcEEEEEEecCCcCcccCc-eecCCCC
Q 012546 110 TNAMFTWQRTSFHFQPEKNW----MNDPNGPLFYKGWYHLFYQYNPDSAVWG-NITWGHAVSADLIHWLYLP-IAMVPDQ 183 (461)
Q Consensus 110 ~~~~~~w~Rp~fHf~P~~gw----mNDPnG~~y~~G~YHLFYQ~nP~~~~wG-~~~WGHA~S~DLvhW~~~p-~AL~Pd~ 183 (461)
|..++.|++-.-=+.|..-| +-.++ ++..+|++||||..+.....+. ...-++|+|+|+.+|+..+ ++|.+..
T Consensus 62 S~Dlv~W~~~~~al~P~~~~d~~G~~sGs-av~~~g~~~l~YTg~~~~~~~~~~~~q~lA~S~Dg~~~~k~~~pvi~~~~ 140 (445)
T TIGR01322 62 SKDLVHWEDEGVALAPDDPYDSHGCYSGS-AVDNNGQLTLMYTGNVRDSDWNRESYQCLATMDDDGHFEKFGIVVIELPP 140 (445)
T ss_pred CCCccccEECCccCcCCCcccCCceEECe-EEeeCCEEEEEEeccccCCCCCeeEEEEEEEcCCCCeEEECCCceEeCCC
Confidence 44577786543334454322 12343 3557999999999764322222 2334689999999999876 5565532
Q ss_pred cccCCCeEeeeEEEccCCcEEEEEcccCCCccceEEEEEecCCCCCCcceEEEcCCCceecCCC---CCCCCCCCCCeeE
Q 012546 184 WYDINGVWTGSATILPDGQIVMLYTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPR---HIGPKDFRDPTTA 260 (461)
Q Consensus 184 ~~D~~Gv~SGSavv~~dG~~~~~YTG~~~~~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~---g~~~~dfRDP~V~ 260 (461)
.....+.-+..|+ ..+|+++|++.+...+......+..|.|+ ++|+.. .++..+.. +.....|--|-++
T Consensus 141 ~~~~~~fRDP~V~-~~~g~~~M~~g~~~~~~~g~i~ly~S~Dl-----~~W~~~--g~~~~~~~~~~~~~g~~~ECPdlf 212 (445)
T TIGR01322 141 AGYTAHFRDPKVW-KHNGHWYMVIGAQTETEKGSILLYRSKDL-----KNWTFV--GEILGDGQNGLDDRGYMWECPDLF 212 (445)
T ss_pred CCCcCcCCCCcEE-eECCEEEEEEEEecCCCceEEEEEECCCc-----ccCeEe--cccccccccccCCccceEECCeEE
Confidence 2112234466665 36899999998754432234467777775 899986 34443321 1111246678773
Q ss_pred eecCCCcEEEEEeee
Q 012546 261 WAGPDGKWRLTIGSK 275 (461)
Q Consensus 261 w~~~dG~w~MviGa~ 275 (461)
. -+|+|+|+++..
T Consensus 213 -~-l~~k~vL~~s~~ 225 (445)
T TIGR01322 213 -S-LDGQDVLLFSPQ 225 (445)
T ss_pred -E-ECCcEEEEEecc
Confidence 3 578999998753
No 59
>cd09002 GH43_XYL_3 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended subs
Probab=97.98 E-value=0.00012 Score=73.40 Aligned_cols=78 Identities=17% Similarity=0.241 Sum_probs=55.1
Q ss_pred CCceecCCCCCCCCCCCCCeeEeecCCCcEEEEEeeecCCceEEEEEEeCCCCCCEEcccccccCCCCceeeeeeEEEec
Q 012546 239 GNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKIGKTGISLVYQTTDFKTYELLDEYLHAVPGTGMWECVDFYPVA 318 (461)
Q Consensus 239 ~nPVl~~p~g~~~~dfRDP~V~w~~~dG~w~MviGa~~~~~G~v~lY~S~Dl~~W~~~~~l~~~~~~~gmwECPdlf~l~ 318 (461)
.||||. .++.||.|+. .+++|||+.++. +..+.+.+|+|+||.+|+..+..+... ..++| +|+++...
T Consensus 7 ~nPv~~-------~~~~DP~i~~--~~~~yY~~~t~~-~~~~gi~i~~S~DL~~W~~~g~~~~~~-~~~~W-AP~i~~~~ 74 (280)
T cd09002 7 RNPILA-------GDYPDPSILR--DGEDYYMTHSSF-KYTPGLVIWHSRDLVNWTPVGPALPEY-EGDVW-APDLCKYD 74 (280)
T ss_pred eCCccC-------CCCCCCEEEE--ECCEEEEEEcch-hcCCCEEEEECCCcCCceEccccccCC-CCCEE-cCeeEEEC
Confidence 488875 2568999953 478999976532 222357899999999999988766432 23589 89998864
Q ss_pred ccCcccccccCCCCCeEEEEeeeeC
Q 012546 319 INGSVGLDTSATGPGIKHVLKASLD 343 (461)
Q Consensus 319 ~~~~~~l~~s~~G~~~k~vl~~S~~ 343 (461)
+ |++|-.+..
T Consensus 75 g---------------kyy~yys~~ 84 (280)
T cd09002 75 G---------------RYYIYFPAI 84 (280)
T ss_pred C---------------EEEEEEEee
Confidence 2 677766654
No 60
>cd08997 GH68 Glycosyl hydrolase family 68, includes levansucrase, beta-fructofuranosidase and inulosucrase. Glycosyl hydrolase family 68 (GH68) consists of frucosyltransferases (FTFs) that include levansucrase (EC 2.4.1.10), beta-fructofuranosidase (EC 3.2.1.26) and inulosucrase (EC 2.4.1.9), all of which use sucrose as their preferential donor substrate. Levansucrase, also known as beta-D-fructofuranosyl transferase, catalyzes the transfer of the sucrose fructosyl moiety to a growing levan chain. Similarly, inulosucrase catalyzes long inulin-type of fructans, and beta-fructofuranosidases create fructooligosaccharides (FOS). However, in the absence of high fructan/sucrose ratio, some GH68 enzymes can also use fructan as donor substrate. GH68 retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catalytic n
Probab=97.89 E-value=0.00031 Score=72.86 Aligned_cols=148 Identities=17% Similarity=0.185 Sum_probs=92.7
Q ss_pred ECCEEEEEEEeCCCCC---CCCCcEEEEEEecCCc----CcccCceecCCCC-ccc-------------CCCeEeeeEEE
Q 012546 139 YKGWYHLFYQYNPDSA---VWGNITWGHAVSADLI----HWLYLPIAMVPDQ-WYD-------------INGVWTGSATI 197 (461)
Q Consensus 139 ~~G~YHLFYQ~nP~~~---~wG~~~WGHA~S~DLv----hW~~~p~AL~Pd~-~~D-------------~~Gv~SGSavv 197 (461)
.+|+|||||.-+-... ..-....++++++|+. .|+.....+.++. .|+ ....-...++.
T Consensus 80 ~dg~~~lfYTg~~~~~~~~~~~~Q~ia~a~~~~~~v~~~~~~~~~~lf~~Dg~~Yqt~~q~~~~~~~~~~~~fRDP~vf~ 159 (349)
T cd08997 80 DDGTVQLFYTAVGRKGEPQPTFTQRLALARGTLSVVNLSGFEDHHELFEPDGDLYQTDQQYEGTGAQGDIKAFRDPFVFE 159 (349)
T ss_pred CCCeEEEEEeccccCCCCCCCceEEEEEEECCCcceEecccCccceeeeCCCceEEeccccccccccCccCcccCCEEEe
Confidence 3599999999763211 1123678999999984 4444445566665 332 11234566766
Q ss_pred cc-CCcEEEEEcccCCCc---------------------------cceEEEEEecCCCCCCcceEEEcCCCceecCCCCC
Q 012546 198 LP-DGQIVMLYTGSTDKS---------------------------VQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHI 249 (461)
Q Consensus 198 ~~-dG~~~~~YTG~~~~~---------------------------~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~ 249 (461)
++ +|+++|++++++... .-++++|++++. .|.+|+-+ .|++.+. +.
T Consensus 160 d~~~G~~ymvfeant~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~G~IGia~~~s~---dl~~W~~~--~PL~~a~-~v 233 (349)
T cd08997 160 DPETGKTYLLFEGNTAGERGSQECTEAELGRVLPDTVKPDGASYQNGNVGIAVAKND---DLTEWKLL--PPLLEAN-GV 233 (349)
T ss_pred cCCCCcEEEEEEeccCCCCCccccccccccccccccccccccccccceEEEEEecCC---CCCCcEEc--CccccCC-Cc
Confidence 55 699999999986421 134567766542 24789976 6777643 21
Q ss_pred CCCCCCCCeeEeecCCCcEEEEEeeecC-------CceEEEEEEeCCCC-CCEE
Q 012546 250 GPKDFRDPTTAWAGPDGKWRLTIGSKIG-------KTGISLVYQTTDFK-TYEL 295 (461)
Q Consensus 250 ~~~dfRDP~V~w~~~dG~w~MviGa~~~-------~~G~v~lY~S~Dl~-~W~~ 295 (461)
...+-+|.++ + .+|+|||+..++.. ....+..|.|+++. -|+.
T Consensus 234 -~d~~E~P~v~-~-~~gk~yL~~s~~~~~~~~~~~~~~~~~g~vsdsl~GP~~~ 284 (349)
T cd08997 234 -NDELERPHVV-F-HNGKYYLFTISHRSTFAPGLSGPDGLYGFVSDSLRGPYKP 284 (349)
T ss_pred -CCceEcceEE-E-ECCEEEEEEeCCcCccccccCCCCcEEEEEeCCCCCCCcc
Confidence 2357789994 3 69999999775421 11245667888864 4554
No 61
>smart00640 Glyco_32 Glycosyl hydrolases family 32.
Probab=97.79 E-value=0.00019 Score=76.35 Aligned_cols=157 Identities=15% Similarity=0.151 Sum_probs=93.5
Q ss_pred CCcccccccccceeeeecCCCcccCCcc-----ceEECCEEEEEEEeCC-CCC--CCCCc-EEEEEEecCCcCcccCc--
Q 012546 108 NWTNAMFTWQRTSFHFQPEKNWMNDPNG-----PLFYKGWYHLFYQYNP-DSA--VWGNI-TWGHAVSADLIHWLYLP-- 176 (461)
Q Consensus 108 ~~~~~~~~w~Rp~fHf~P~~gwmNDPnG-----~~y~~G~YHLFYQ~nP-~~~--~wG~~-~WGHA~S~DLvhW~~~p-- 176 (461)
..|..++.|++..-=+.|... .|.+| ++.++|.|||||.-+- ... ..... .-.+|+|+|+++|+..+
T Consensus 43 a~S~Dlv~W~~~~~aL~P~~~--~d~~g~~sGsav~~~~~~~~~YTg~~~~~~~~~~~~~~~~~~ass~d~~~w~k~~~~ 120 (437)
T smart00640 43 AVSKDLVHWTHLPVALAPDEW--YDSNGVFSGSAVIDPGNLSLLYTGNVAIDTNVQVQRQAQQLAASDDLGGTWTKYPGN 120 (437)
T ss_pred EEcCCcceeeecCcccCCCCc--CCCCcEEEEEEEECCCceEEEEcCCcccccccCcccEEEEEEEECCCCCeeEECCCC
Confidence 335567778653333556542 34444 4456788999998652 111 12222 23678899999999873
Q ss_pred eecCCCCcccCCCeEeeeEEEccCCcEEEEEcccCCCccceEEEEEecCCCCCCcceEEEcCCCceecCCCCCCCCCCCC
Q 012546 177 IAMVPDQWYDINGVWTGSATILPDGQIVMLYTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRD 256 (461)
Q Consensus 177 ~AL~Pd~~~D~~Gv~SGSavv~~dG~~~~~YTG~~~~~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRD 256 (461)
++|.+...+.....-+..|+..++|+++|++.+...+..-.+.++.|+|+ ++|+.. .+++.+..+.....|-.
T Consensus 121 Pvi~~~p~~~~~~fRDP~Vf~~~~~~~~m~~g~~~~~~~G~i~ly~S~Dl-----~~W~~~--~~~~~~~~~~~g~~wEC 193 (437)
T smart00640 121 PVLVPPPGIGTEHFRDPKVFWYDGDKWYMVIGASDEDKTGIALLYRSTDL-----KNWTLL--GELLHSGVGDTGGMWEC 193 (437)
T ss_pred cEEeCCCCCCCCCcCCCCccEECCCEEEEEEEEEecCCCeEEEEEECCCc-----ccCeEC--CcccccCCCCccceEEC
Confidence 55655433333344466665544469999998765443445678888885 899885 34544311111135677
Q ss_pred CeeEeecCCC-----cEEEEEeee
Q 012546 257 PTTAWAGPDG-----KWRLTIGSK 275 (461)
Q Consensus 257 P~V~w~~~dG-----~w~MviGa~ 275 (461)
|-.+ . -++ +|+|+++..
T Consensus 194 Pdlf-~-l~~~~~~~~~vLi~s~~ 215 (437)
T smart00640 194 PDLF-P-LPGDGDTSKHVLKVSPQ 215 (437)
T ss_pred CcEE-E-eCCCCCceeEEEEECcC
Confidence 7763 2 344 898988764
No 62
>cd08988 GH43_ABN Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-bla
Probab=97.74 E-value=0.0016 Score=65.07 Aligned_cols=147 Identities=13% Similarity=0.105 Sum_probs=80.3
Q ss_pred ccCCccceEECCEEEEEEEeCCCCCCCCCcEEEEEEecCCc-C-----cccCceecCCCCcccCCCeEeeeEEEccCCcE
Q 012546 130 MNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLI-H-----WLYLPIAMVPDQWYDINGVWTGSATILPDGQI 203 (461)
Q Consensus 130 mNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLv-h-----W~~~p~AL~Pd~~~D~~Gv~SGSavv~~dG~~ 203 (461)
+.-|. +.+++|+|||||.....+. .....|.|+|++.. - |+...+.+.++.. +......+++++++||+.
T Consensus 57 ~WAP~-v~~~~G~yylyys~~~~~~--~~~~igva~s~~p~Gp~~~~~w~~~~~i~~~~~~-~~~~~iDp~~f~DdDG~~ 132 (279)
T cd08988 57 LWAPD-IYQHNGKFYLYYSVSAFGS--NTSAIGLAVNKTIDGPSPDYGWEKGGVVISSDAS-DNYNAIDPAIIFDQHGQP 132 (279)
T ss_pred Eecce-EEEECCEEEEEEEeccCCC--CCceEEEEEcCCCCCCCcCcCccccCceEecCCC-CCCCccCCceEEcCCCCE
Confidence 34454 7888999999998765432 23568999999854 2 5443343433322 223456889988889999
Q ss_pred EEEEcccCCCccceEEEEEecCCCCCCcceEEEcCCCceecCCCCCCCCCCCCCeeEeecCCCcEEEEEeeec-----CC
Q 012546 204 VMLYTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKI-----GK 278 (461)
Q Consensus 204 ~~~YTG~~~~~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP~V~w~~~dG~w~MviGa~~-----~~ 278 (461)
+|+|.... .+. ...-.+.|..... .. .....++..+. .....-=|++ ++ .+|+|||+..+.. +.
T Consensus 133 Yl~~g~~~-~gi--~~~eL~~d~~~~~-~~---~~~~~i~~~~~--~~~~~Egp~i-~k-~~g~YYl~~S~g~~~~~~~~ 201 (279)
T cd08988 133 WLSFGSFW-GGI--KLFELDKDTMKPA-EP---GELHSIAGRER--SSAAIEAPFI-LY-RGDYYYLFVSFGLCCRGGDS 201 (279)
T ss_pred EEEecccC-CCE--EEEEECcccCCcc-CC---CcceEEeccCC--CCCceEeeEE-EE-cCCeEEEEEEcCcccCCCCC
Confidence 99996432 111 1222333432110 00 00011221110 0011233777 44 6899999876431 12
Q ss_pred ceEEEEEEeCCCC
Q 012546 279 TGISLVYQTTDFK 291 (461)
Q Consensus 279 ~G~v~lY~S~Dl~ 291 (461)
.-.+.+++|+++.
T Consensus 202 ~y~v~~arS~~~~ 214 (279)
T cd08988 202 TYKIAVGRSKNIT 214 (279)
T ss_pred CeEEEEEEeCCCC
Confidence 2357788998753
No 63
>COG2152 Predicted glycosylase [Carbohydrate transport and metabolism]
Probab=97.73 E-value=0.00011 Score=74.25 Aligned_cols=116 Identities=16% Similarity=0.237 Sum_probs=86.6
Q ss_pred eecCCCCc--ccCC----CeEeeeEEEccCCcEEEEEcccC-----CCccceEEEEEecCCCCCCcce-EEEcCCCceec
Q 012546 177 IAMVPDQW--YDIN----GVWTGSATILPDGQIVMLYTGST-----DKSVQVQNLAYPADPSDPLLLD-WVKYPGNPVLV 244 (461)
Q Consensus 177 ~AL~Pd~~--~D~~----Gv~SGSavv~~dG~~~~~YTG~~-----~~~~q~q~lA~S~D~~d~lL~~-W~K~~~nPVl~ 244 (461)
+.+.|... +++. .+|.++++. .++++.|+|-... ........+|.|+|+ .+ |++. .+|++.
T Consensus 12 pIi~~~~~~~~~~~~~~~~vFNpav~~-~~~~~~~l~Rv~~~yye~~~~~s~l~ia~s~dg-----i~~~~~e-~ep~~~ 84 (314)
T COG2152 12 PIITRSDYIPPHARFIVVSVFNPAVVL-VGGELLLLYRVVEGYYEDHSSISHLRIARSDDG-----IGEFEIE-PEPTLW 84 (314)
T ss_pred CceeeccccCCCCceeEEEEecceeEE-ECCEEEEEEEEeccccccCccceEEEEEecccC-----CCceecC-CcceEe
Confidence 34555543 4555 799999875 6899999998732 234566789999997 55 9986 489988
Q ss_pred C-CCCCCCCCCCCCeeEeecCCCcEEEEEeeecCCceEEEEEEeCCCCCCEEcccccc
Q 012546 245 P-PRHIGPKDFRDPTTAWAGPDGKWRLTIGSKIGKTGISLVYQTTDFKTYELLDEYLH 301 (461)
Q Consensus 245 ~-p~g~~~~dfRDP~V~w~~~dG~w~MviGa~~~~~G~v~lY~S~Dl~~W~~~~~l~~ 301 (461)
| --.++....-||.|.. .+|+|+|.+.+..+......+.-++|+.+|++.+.++.
T Consensus 85 P~~~~~e~~G~EDPRvt~--I~~~y~mtYTa~s~~g~~~~la~t~~f~n~~rig~i~~ 140 (314)
T COG2152 85 PANYPYEIYGIEDPRVTK--IGGRYYMTYTAYSDKGPRLALAVTKDFLNWERIGAIFP 140 (314)
T ss_pred cCCCchhhhcccCceEEE--ECCEEEEEEEecCCCCcccchhhhhhhhhhhhcccccC
Confidence 7 2234456678999953 68999999998866655777888999999999988764
No 64
>cd09004 GH43_bXyl Glycosyl hydrolase family 43, includes mostly 1,4-beta-xylanases. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=97.73 E-value=0.001 Score=65.86 Aligned_cols=138 Identities=15% Similarity=0.092 Sum_probs=82.0
Q ss_pred CCccceEECCEEEEEEEeCCCCCCCCCcEEEEEEecCCc-Cccc-Cc-eecCCCCcccCCCeEeeeEEEccCCcEEEEEc
Q 012546 132 DPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLI-HWLY-LP-IAMVPDQWYDINGVWTGSATILPDGQIVMLYT 208 (461)
Q Consensus 132 DPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLv-hW~~-~p-~AL~Pd~~~D~~Gv~SGSavv~~dG~~~~~YT 208 (461)
-|. +++++|+|+|||..+ ...++|+|+|.. .|+. .+ +.+.+.. ......+++++.+.||+++|+|.
T Consensus 68 AP~-v~~~~g~yy~yys~~--------~~i~va~s~~p~gp~~~~~~~p~~~~~~--~~~~~iDp~vf~d~dG~~yl~~~ 136 (275)
T cd09004 68 APS-VIERNGKYYFYFSAN--------GGIGVAVADSPLGPFKDALGKPLIDKFT--FGAQPIDPDVFIDDDGQAYLYWG 136 (275)
T ss_pred CCe-EEEECCEEEEEEEcC--------CcEEEEEeCCCCCCCCCCCCCccccCCc--CCCCccCCCeEECCCCCEEEEEc
Confidence 465 788899999999864 357999999965 6876 33 3333321 22345678888777999999997
Q ss_pred ccCCCccceEEE-EEecCCCCCCcceEEEcCCCceecCCCCCCCCCCCCCeeEeecCCCcEEEEEeeecC--CceEEEEE
Q 012546 209 GSTDKSVQVQNL-AYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKIG--KTGISLVY 285 (461)
Q Consensus 209 G~~~~~~q~q~l-A~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP~V~w~~~dG~w~MviGa~~~--~~G~v~lY 285 (461)
+.. ...+ ..+.|. .+|+.. ...+...+. .-+--|.+ ++ .+|+|+|++.+... ..-.+.+.
T Consensus 137 ~~~-----~~~i~~l~~d~-----~~~~~~-~~~~~~~~~----~~~EgP~i-~k-~~G~yyl~ys~~~~~~~~Y~~~ya 199 (275)
T cd09004 137 GWG-----HCNVAKLNEDM-----ISFDGE-RDGSEITPK----NYFEGPFM-FK-RNGIYYLMWSEGGWTDPDYHVAYA 199 (275)
T ss_pred CcC-----CEEEEEECCCc-----ccccCc-ceeeeccCC----CceecceE-EE-ECCEEEEEEECCCCCCCCceEEEE
Confidence 531 1222 334443 455432 111101111 12344887 44 68999998876421 12255566
Q ss_pred EeCCCC-CCEEcc
Q 012546 286 QTTDFK-TYELLD 297 (461)
Q Consensus 286 ~S~Dl~-~W~~~~ 297 (461)
+|++.. -|+..+
T Consensus 200 ~s~~~~GP~~~~~ 212 (275)
T cd09004 200 MADSPLGPFERPG 212 (275)
T ss_pred EcCCCCCCcccCC
Confidence 787753 366544
No 65
>cd08980 GH43_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=97.69 E-value=0.0012 Score=65.90 Aligned_cols=147 Identities=16% Similarity=0.178 Sum_probs=83.3
Q ss_pred ecCCCcccCCccceEECCEEEEEEEeCCCCCCCCCcEEEEEEecCCcCcccCcee-cCCCCcccCC--CeEeeeEEEccC
Q 012546 124 QPEKNWMNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIA-MVPDQWYDIN--GVWTGSATILPD 200 (461)
Q Consensus 124 ~P~~gwmNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~A-L~Pd~~~D~~--Gv~SGSavv~~d 200 (461)
.+...+..||+ ++.++|+++|||-..-.....+.-.|....+ |...+...+.. ..|...|+.. ++.-|..++..+
T Consensus 107 ~~~~~~~iDp~-~~~ddG~~Yl~~~~~~~~~~~~~~i~~~~l~-~~~~~~g~~~~i~~p~~~we~~~~~~~EgP~~~k~~ 184 (288)
T cd08980 107 DPTDRWAIDGT-VFEHNGQLYFVWSGWEGRTNGNQNLYIAKMS-NPWTLTGPRVLISRPEYDWERQGPGVNEGPAALKRN 184 (288)
T ss_pred cCCCCeeeeeE-EEEECCEEEEEEEccCCCCCCCccEEEEECC-CCCccCCcceEecCCCCCceecCceeeECcEEEEEC
Confidence 34466778997 6777899999985322111111223443333 43455533433 3455455543 466777777789
Q ss_pred CcEEEEEcccCC-CccceEEEEEecCCCCCCc-ceEEEcCCCceecCCCCCCCCCCCCCeeEeecCCCc-EEEEEee
Q 012546 201 GQIVMLYTGSTD-KSVQVQNLAYPADPSDPLL-LDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGK-WRLTIGS 274 (461)
Q Consensus 201 G~~~~~YTG~~~-~~~q~q~lA~S~D~~d~lL-~~W~K~~~nPVl~~p~g~~~~dfRDP~V~w~~~dG~-w~MviGa 274 (461)
|.++|+|++... .....+++|+++...+++. ..|+|. .+||+.....-....---..+ ....+|+ |+|++=+
T Consensus 185 G~yYl~yS~~~~~~~~Y~v~~a~~~~~~~~~~~~~~~~~-~~pil~~~~~~~~~g~GH~~i-v~~~~G~~~~~~yH~ 259 (288)
T cd08980 185 GKVFLTYSASGSWTPDYCLGLLTADGGADLLDPASWTKS-PTPVFQSSPENGVYGPGHNSF-TKSPDGTEDWIVYHA 259 (288)
T ss_pred CEEEEEEECCCCCCCCCEEEEEEEcCCCCCCChhhCcCC-CCCceecCCCCccCcCCccce-EECCCCCEEEEEEcc
Confidence 999999997654 3344567888765433322 358886 478887543100011112344 3446776 8887643
No 66
>cd08985 GH43_6 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=97.59 E-value=0.0029 Score=62.90 Aligned_cols=145 Identities=17% Similarity=0.192 Sum_probs=86.0
Q ss_pred ccCCccceEE--CCEEEEEEEeCCCCCCCCCcEEEEEEecCCc-CcccCceecCCCCcccCCCeEeeeEEEccCCcEEEE
Q 012546 130 MNDPNGPLFY--KGWYHLFYQYNPDSAVWGNITWGHAVSADLI-HWLYLPIAMVPDQWYDINGVWTGSATILPDGQIVML 206 (461)
Q Consensus 130 mNDPnG~~y~--~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLv-hW~~~p~AL~Pd~~~D~~Gv~SGSavv~~dG~~~~~ 206 (461)
+--|. ++|+ +|+|||||..+... .+....|+|+|++.. -|+.++..+ |. ..+..+.++++++||+.+|+
T Consensus 65 ~waP~-v~y~~~~g~Y~m~~~~~~~~--~~~~~igvA~Sd~p~Gpf~~~~~~~-~~----~~~~~Dp~vf~DdDG~~Yl~ 136 (265)
T cd08985 65 IERPK-VIYNAKTGKYVMWMHIDSSD--YSDARVGVATSDTPTGPYTYLGSFR-PL----GYQSRDFGLFVDDDGTAYLL 136 (265)
T ss_pred EECCe-EEEeCCCCEEEEEEEeCCCC--CcceeEEEEEeCCCCCCCEECCccC-CC----CCCccCCceEEcCCCCEEEE
Confidence 44454 5665 59999999987522 245678999998754 477655332 21 23456788988889999999
Q ss_pred EcccCCCccceEEEEEe-cCCCCCCcceEEEcCCCceecCCCCCCCCCCCCCeeEeecCCCcEEEEEeeecC-CceEEEE
Q 012546 207 YTGSTDKSVQVQNLAYP-ADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKIG-KTGISLV 284 (461)
Q Consensus 207 YTG~~~~~~q~q~lA~S-~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP~V~w~~~dG~w~MviGa~~~-~~G~v~l 284 (461)
|....+ +.+.++.- .|. ..+ .+.+..... ....--|.+ ++ .+|.|||+...... ....+..
T Consensus 137 ~~~~~~---~~i~i~~L~~d~-----~~~---~~~~~~~~~----~~~~EaP~i-~K-~~g~YYL~~S~~t~~~~~~~~y 199 (265)
T cd08985 137 YSDRDN---SDLYIYRLTDDY-----LSV---TGEVTTVFV----GAGREAPAI-FK-RNGKYYLLTSGLTGWNPNDARY 199 (265)
T ss_pred EecCCC---CceEEEEeCCCc-----ccc---cceEEEccC----CCccccceE-EE-ECCEEEEEEccCCCccCCceEE
Confidence 986532 22334432 232 222 223321111 123457888 54 68999999865421 1123556
Q ss_pred EEeCCCC-CCEEcccc
Q 012546 285 YQTTDFK-TYELLDEY 299 (461)
Q Consensus 285 Y~S~Dl~-~W~~~~~l 299 (461)
++|+++. -|+..+.+
T Consensus 200 ~~s~s~~GP~~~~~~~ 215 (265)
T cd08985 200 ATATSILGPWTDLGNP 215 (265)
T ss_pred EEecCCCCCccccCcC
Confidence 7787754 57665544
No 67
>cd09001 GH43_XYL_2 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend
Probab=97.56 E-value=0.0025 Score=63.41 Aligned_cols=132 Identities=14% Similarity=0.104 Sum_probs=77.0
Q ss_pred cCCccceEECCEEEEEEEeCCCCCCCCCcEEEEEEecCCc-CcccCceecCCCCcccCCCeEeeeEEEccCCcEEEEEcc
Q 012546 131 NDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLI-HWLYLPIAMVPDQWYDINGVWTGSATILPDGQIVMLYTG 209 (461)
Q Consensus 131 NDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLv-hW~~~p~AL~Pd~~~D~~Gv~SGSavv~~dG~~~~~YTG 209 (461)
--|. ++|.+|+|||||-.+. ...+.|+|++.. .|+..+... ...++++++++||+.+|+|.+
T Consensus 77 WAP~-v~~~~gkyy~yys~~~-------~~~~v~~a~~p~Gpw~~~~~~~---------~~iDp~~f~D~dG~~Yl~~~~ 139 (269)
T cd09001 77 WAPS-LRYHNGTFYVFFCTNT-------GGTYIYTADDPEGPWTKTALDG---------GYHDPSLLFDDDGTAYLVYGG 139 (269)
T ss_pred ECCc-eEEECCEEEEEEEecC-------CCeEEEEcCCCCCCCcCCCcCC---------CcccCceEEcCCCCEEEEeCC
Confidence 3454 7888999999998751 124577777743 677654321 345778888889999999965
Q ss_pred cCCCccceEEEE-EecCCCCCCcceEEEcCCCc-eecCCCCCCCCCCCCCeeEeecCCCcEEEEEeeecCCceEEEEEEe
Q 012546 210 STDKSVQVQNLA-YPADPSDPLLLDWVKYPGNP-VLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKIGKTGISLVYQT 287 (461)
Q Consensus 210 ~~~~~~q~q~lA-~S~D~~d~lL~~W~K~~~nP-Vl~~p~g~~~~dfRDP~V~w~~~dG~w~MviGa~~~~~G~v~lY~S 287 (461)
. .+.++ .+.|. .... ...+ ++..+. ......-=|++ ++ .+|+|||++.+..+....+.+++|
T Consensus 140 ~------~i~~~~l~~d~-----~~~~--~~~~~~~~~~~-~~~~~~Egp~i-~k-~~G~YYl~~S~~~~~~~~~~~~~s 203 (269)
T cd09001 140 G------TIRLVELSPDL-----TGVG--GKDQVIIDAGE-EIGLGAEGSHL-YK-INGYYYIFNIAWGGGGRTQTCLRS 203 (269)
T ss_pred C------cEEEEEECccc-----CCcC--CCceEEEeCCC-ccccccccCeE-EE-ECCEEEEEEecCCCCCceEEEEEe
Confidence 3 23333 33342 2221 1122 333221 11112334887 44 689999998754322335667889
Q ss_pred CCCC-CCEE
Q 012546 288 TDFK-TYEL 295 (461)
Q Consensus 288 ~Dl~-~W~~ 295 (461)
+++. -|+.
T Consensus 204 ~~~~GP~~~ 212 (269)
T cd09001 204 KSLTGPYES 212 (269)
T ss_pred CCCCCCcCC
Confidence 8854 3554
No 68
>cd09003 GH43_AXH_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), xylanase (endo-alpha-L-arabinanase) as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of arabinoxylan. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose
Probab=97.40 E-value=0.0072 Score=61.55 Aligned_cols=167 Identities=13% Similarity=0.192 Sum_probs=91.2
Q ss_pred cccccccceeeeec--CCCcc---cCCccceEEC----CEEEEEEEeCCCCCCCCCcEEEEEEecCCc-CcccC-ceec-
Q 012546 112 AMFTWQRTSFHFQP--EKNWM---NDPNGPLFYK----GWYHLFYQYNPDSAVWGNITWGHAVSADLI-HWLYL-PIAM- 179 (461)
Q Consensus 112 ~~~~w~Rp~fHf~P--~~gwm---NDPnG~~y~~----G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLv-hW~~~-p~AL- 179 (461)
.|..|+....-|.| ...|. --|. +++++ |+|+|||... ....|.|+|+|.. .|+.. +..|
T Consensus 55 DL~~W~~~g~v~~~~~~~~w~~~~WAP~-v~~~~~~~~gkyylyy~~~-------~~~igva~SdsP~GP~~~~~g~~l~ 126 (311)
T cd09003 55 DMVNWTDHGEIFVPNGIAKWAGNSWAPS-IAVKKINGKGKFYLYFANG-------GGGIGVLTADSPVGPWTDPLGKPLI 126 (311)
T ss_pred CCCCcEEcccccCcCCCCCcccccCCCc-eEEeccCCCCEEEEEEecC-------CCeEEEEEcCCCCCCcccCCCCeee
Confidence 34556544444432 22332 3454 67777 9999999632 2457999999954 79875 3222
Q ss_pred CCC-Cccc-CCCeEeeeEEEccCCcEEEEEcccCC----CccceEEEEEe-cCCCCCCcceEEEcCCCceecCCCCCCCC
Q 012546 180 VPD-QWYD-INGVWTGSATILPDGQIVMLYTGSTD----KSVQVQNLAYP-ADPSDPLLLDWVKYPGNPVLVPPRHIGPK 252 (461)
Q Consensus 180 ~Pd-~~~D-~~Gv~SGSavv~~dG~~~~~YTG~~~----~~~q~q~lA~S-~D~~d~lL~~W~K~~~nPVl~~p~g~~~~ 252 (461)
.+. ...+ .....++++++++||+.+|+|.+... ...+.+.+|.- .|. .+ ..+.++....+ .
T Consensus 127 ~~~~~~~~~~~~~iDp~~f~DdDG~~Yl~~g~~~~~~~~~~~~~i~i~~l~~D~-----~~---~~g~~~~i~~~----~ 194 (311)
T cd09003 127 TGSTPGCAGVVWLFDPAVFVDDDGQGYLYFGGGVPGGRWANPNTARVIKLGDDM-----IS---VDGSAVTIDAP----Y 194 (311)
T ss_pred cCCCCCccCCccccCCCeEECCCCCEEEEECCccCCCccccCCCEEEEEeCCCc-----ee---ccCCceEccCC----C
Confidence 221 1111 12246888888889999999975322 11123344433 232 22 22233222111 1
Q ss_pred CCCCCeeEeecCCCcEEEEEeeec-------CCceEEEEEEeCCCC-CCEEccccc
Q 012546 253 DFRDPTTAWAGPDGKWRLTIGSKI-------GKTGISLVYQTTDFK-TYELLDEYL 300 (461)
Q Consensus 253 dfRDP~V~w~~~dG~w~MviGa~~-------~~~G~v~lY~S~Dl~-~W~~~~~l~ 300 (461)
.+-=|++ ++ .+|+|||++.+.. .....+.+.+|++.. -|+..++++
T Consensus 195 ~~Egp~~-~K-~~G~YYL~ys~~~~~~~~~~~~~y~v~y~~s~~~~GP~~~~g~il 248 (311)
T cd09003 195 FFEASGL-HK-INGTYYYSYCTNFGGRDPGKPPPGRIAYMTSKNPMGPFTYKGIIL 248 (311)
T ss_pred ceEeeeE-EE-ECCEEEEEEeCCCCccCCCCCCceeEEEEEcCCCCCCcccCCEec
Confidence 2334777 44 6899999886531 223455566777643 577655554
No 69
>cd09000 GH43_XYL_1 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend
Probab=97.40 E-value=0.0076 Score=60.21 Aligned_cols=143 Identities=16% Similarity=0.114 Sum_probs=81.2
Q ss_pred ccCCccceEECCEEEEEEEeCCCCCCCCCcEEEEEEecCCc-CcccCceecCCCCcccCCCeEeeeEEEccCCcEEEEEc
Q 012546 130 MNDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLI-HWLYLPIAMVPDQWYDINGVWTGSATILPDGQIVMLYT 208 (461)
Q Consensus 130 mNDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLv-hW~~~p~AL~Pd~~~D~~Gv~SGSavv~~dG~~~~~YT 208 (461)
+.-|. +++++|+|||||...... + ....+.++|+|.- -|++ +. +.+. .+..++++.++||+.+|+|.
T Consensus 68 ~WAP~-v~~~~g~yy~yy~~~~~~--~-~~~~~v~~s~~p~gpw~~-~~-~~~~------~~iDp~vf~d~dG~~Y~~~~ 135 (288)
T cd09000 68 IWAPT-IRYHDGTFYLITTNVDGM--K-DGGNFIVTADDPAGPWSD-PV-WLDS------GGIDPSLFFDDDGKVYLVGN 135 (288)
T ss_pred eEcce-EEEECCEEEEEEEecCCC--C-CCceEEEEeCCCCCCCcC-CE-ecCC------CccCCceeEcCCCCEEEEec
Confidence 34465 788899999999876432 2 2345678898873 6774 22 2221 45678888877999999886
Q ss_pred ccCCC----ccceEEEEEecCCCCCCcceEEEcCCCc--eecCCCCCCCCCCCCCeeEeecCCCcEEEEEeeec-CCceE
Q 012546 209 GSTDK----SVQVQNLAYPADPSDPLLLDWVKYPGNP--VLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKI-GKTGI 281 (461)
Q Consensus 209 G~~~~----~~q~q~lA~S~D~~d~lL~~W~K~~~nP--Vl~~p~g~~~~dfRDP~V~w~~~dG~w~MviGa~~-~~~G~ 281 (461)
..... ....+.++..+. | .++-. +.+ +..... ....--|++ ++ .+|+|||++.+.. ...-.
T Consensus 136 ~~~~~~~~~~~~~i~~~~l~~--~----~~~~~-~~~~~~~~~~~---~~~~Egp~v-~k-~~g~YYl~ys~~~~~~~~~ 203 (288)
T cd09000 136 GWDERRGYNGHGGIWLQEIDL--E----TGKLL-GEPKVIWNGTG---GRWPEGPHL-YK-RDGWYYLLIAEGGTGYGHS 203 (288)
T ss_pred ccCCccccCCCCcEEEEEEcc--c----cCCCC-CCcEEEEeCCC---CCCcccCeE-EE-ECCEEEEEEecCCCCCCeE
Confidence 54221 112344443221 0 11111 122 111110 012234887 44 6899999985432 22235
Q ss_pred EEEEEeCCCC-CCEEc
Q 012546 282 SLVYQTTDFK-TYELL 296 (461)
Q Consensus 282 v~lY~S~Dl~-~W~~~ 296 (461)
+.+++|+++. -|+..
T Consensus 204 v~~~~s~~~~Gp~~~~ 219 (288)
T cd09000 204 VTVARSRSITGPYEPA 219 (288)
T ss_pred EEEEEeCCCCCCCccC
Confidence 7788999876 57653
No 70
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=97.33 E-value=0.0076 Score=61.49 Aligned_cols=167 Identities=19% Similarity=0.243 Sum_probs=99.0
Q ss_pred ccccceeeeecC--CCcccCCccceEEC-CEEEEEEEeCCCCC-------CCCCcEEEEEEecCC-cCcccCceecCCCC
Q 012546 115 TWQRTSFHFQPE--KNWMNDPNGPLFYK-GWYHLFYQYNPDSA-------VWGNITWGHAVSADL-IHWLYLPIAMVPDQ 183 (461)
Q Consensus 115 ~w~Rp~fHf~P~--~gwmNDPnG~~y~~-G~YHLFYQ~nP~~~-------~wG~~~WGHA~S~DL-vhW~~~p~AL~Pd~ 183 (461)
.|..++.-.... ...+.||. ++... |+-+|||...+... .+......+.+|+|- ..|.. |..|.+..
T Consensus 59 tW~~~~~i~~~~~~~~~~~~p~-~v~~~~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~-p~~l~~~~ 136 (351)
T cd00260 59 TWSPSTVISDGDGKSSRVKDPT-VVVDGLGRVFLLVGSFPNGEGEDNDYAGPSNAYLVLVYSDDDGITWSS-PRDLTPSV 136 (351)
T ss_pred cccccEEehhcCCCCCcEEcce-EEEcCCCCEEEEEEECCCcccccccccCCCceEEEEEEEEcCCceecC-CccCCccc
Confidence 465554433332 24567887 67776 99999998877642 123455677888885 89975 33333332
Q ss_pred c-ccCCCeE--eeeEEEccCCcEEEEEcccCCCccceEEEEEecCCCCCCcceEEEcCCCceecCCCCCCCCCCCCCeeE
Q 012546 184 W-YDINGVW--TGSATILPDGQIVMLYTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTA 260 (461)
Q Consensus 184 ~-~D~~Gv~--SGSavv~~dG~~~~~YTG~~~~~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP~V~ 260 (461)
. .+....+ .|+.++..+|++++.+.+....+.....+.+|+|.+ .+|+... ++ ++ ......|.++
T Consensus 137 ~~~~~~~~~~~~g~gi~l~~Grlv~p~~~~~~~~~~~~~~~~S~D~G----~tW~~~~--~~--~~----~~~~~e~~i~ 204 (351)
T cd00260 137 KGDNWAALFTGPGSGIQMKDGRLVFPVYGGNAGGRVSSAIIYSDDSG----KTWKLGE--GV--ND----AGGCSECSVV 204 (351)
T ss_pred cCcceeEEEecCcCeEEecCCcEEEEEEEEcCCCCEEEEEEEECCCC----CCcEECC--CC--CC----CCCCcCCEEE
Confidence 1 1112223 233455678998876555433333455677888875 8998632 11 11 1233458875
Q ss_pred eecCCCcEEEEEeeecCCceEEEEEEeCC-CCCCEEccc
Q 012546 261 WAGPDGKWRLTIGSKIGKTGISLVYQTTD-FKTYELLDE 298 (461)
Q Consensus 261 w~~~dG~w~MviGa~~~~~G~v~lY~S~D-l~~W~~~~~ 298 (461)
.-.+|..+|+..... .+...+|.|.| ..+|+....
T Consensus 205 -el~dG~l~~~~R~~~--~~~~~~~~S~D~G~tWs~~~~ 240 (351)
T cd00260 205 -ELSDGKLYMYTRDNS--GGRRPVYESRDMGTTWTEALG 240 (351)
T ss_pred -EecCCEEEEEEeeCC--CCcEEEEEEcCCCcCcccCcC
Confidence 235898888765432 46667888887 489997544
No 71
>COG3507 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=97.20 E-value=0.0029 Score=68.55 Aligned_cols=140 Identities=23% Similarity=0.357 Sum_probs=80.5
Q ss_pred EEEEecCCcCcccCceecCCCC------c-ccCCCeEeeeEEEccCCcEEEEEcccCCCc---cceEEEEEecCCCCCCc
Q 012546 162 GHAVSADLIHWLYLPIAMVPDQ------W-YDINGVWTGSATILPDGQIVMLYTGSTDKS---VQVQNLAYPADPSDPLL 231 (461)
Q Consensus 162 GHA~S~DLvhW~~~p~AL~Pd~------~-~D~~Gv~SGSavv~~dG~~~~~YTG~~~~~---~q~q~lA~S~D~~d~lL 231 (461)
.-+.|+||+||+...-.|.+.. . -+..|||..++. ..||+++|+||-+.... ....+..++.+..+
T Consensus 56 ~i~hS~DL~nW~~v~tpl~~~~~ld~kgn~~~S~giWAPdl~-y~dGkfwl~ytdvk~~~g~~k~~~nyl~t~~s~~--- 131 (549)
T COG3507 56 AIHHSRDLVNWTLVSTPLIRTSQLDLKGNFPYSGGIWAPDLS-YHDGKFWLYYTDVKRSGGPYKNAGNYLVTAESID--- 131 (549)
T ss_pred eeeccccccCcEEecccccCcchhhhhcccCCCCceecccee-cCCCcEEEEEecccccCCcccccccEEEEecCCC---
Confidence 4578999999998875554443 2 246789999986 79999999998664321 11122333322211
Q ss_pred ceEEEcCCCceecCCCCCCCCCCCCCeeEeecCCCcEEEEEeeecCC------ceEEEEEEeCCCCCCEEccc----ccc
Q 012546 232 LDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKIGK------TGISLVYQTTDFKTYELLDE----YLH 301 (461)
Q Consensus 232 ~~W~K~~~nPVl~~p~g~~~~dfRDP~V~w~~~dG~w~MviGa~~~~------~G~v~lY~S~Dl~~W~~~~~----l~~ 301 (461)
-.|.. |+..+-. .--||.+++ ++||+-+|+.|+...+ .|++ ++-.|-+.-++.+. ++.
T Consensus 132 G~WsD----pi~l~~~-----~~iDPslf~-D~dGr~wlv~~~w~~~~~~~~~~~i~--l~~~~~~~~~l~g~~~~~~~~ 199 (549)
T COG3507 132 GPWSD----PIKLNGS-----NAIDPSLFF-DKDGRKWLVNGSWDGGIFMHSFAGII--LQEYDKTTQKLVGQGYKIIFD 199 (549)
T ss_pred CCccc----ceecCCc-----CccCCceee-cCCCCEEEEecccCCCccccccccee--eeeccccccccCCccceeEec
Confidence 34553 3333211 236899955 6899999999876321 2343 33333333333333 221
Q ss_pred cCCCCceeeeeeEEEec
Q 012546 302 AVPGTGMWECVDFYPVA 318 (461)
Q Consensus 302 ~~~~~gmwECPdlf~l~ 318 (461)
....+.-|-|-+++..
T Consensus 200 -G~~~~~~EGPhl~k~~ 215 (549)
T COG3507 200 -GGNGGLTEGPHLYKKT 215 (549)
T ss_pred -cCCCccccCceeeccC
Confidence 1112367889777764
No 72
>PF03664 Glyco_hydro_62: Glycosyl hydrolase family 62 ; InterPro: IPR005193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha -L-arabinofuranosidases (3.2.1.55 from EC) which are all members of glycoside hydrolase family 62 (GH62 from CAZY). This enzyme hydrolyzed aryl alpha-L-arabinofuranosides and cleaves arabinosyl side chains from arabinoxylan and arabinan.; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process
Probab=97.14 E-value=0.059 Score=53.22 Aligned_cols=175 Identities=16% Similarity=0.264 Sum_probs=93.6
Q ss_pred eeeeecCCCcc--cCCccceEECCEEEEEEEeCCCCCCCCCcEEEEEEecCCcCcccCceecCCCCcccCCCeEeeeEE-
Q 012546 120 SFHFQPEKNWM--NDPNGPLFYKGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMVPDQWYDINGVWTGSAT- 196 (461)
Q Consensus 120 ~fHf~P~~gwm--NDPnG~~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~Pd~~~D~~Gv~SGSav- 196 (461)
.--.+|..||. .||- +++++|+||+|....-.+..| |-..=.-+-+|....-|= ...-+. +.-...++
T Consensus 13 g~L~~Pk~g~~slKD~T-~V~ynGk~~VyAtt~d~~~~y-----~sm~f~~Ftdws~~~sA~--q~~m~~-~~vAP~vFY 83 (271)
T PF03664_consen 13 GPLAQPKSGWVSLKDFT-IVPYNGKHHVYATTADTGGGY-----GSMNFGPFTDWSQMASAS--QNYMDQ-SAVAPQVFY 83 (271)
T ss_pred CccccCCCCceeccCce-EEeECCEEEEEEEeccCCCcc-----ceEeeeccCCHHHhhccc--cccCCc-ccccceEEE
Confidence 34467888986 6997 899999999999876444444 433334567787765431 111122 21122222
Q ss_pred EccCCcEEEEEcccCCCccceEEEEEecCCCCCCcceEEEcCCCceecCC-CCCCCCCCCCCeeEeecCCCcEEEEEeee
Q 012546 197 ILPDGQIVMLYTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPP-RHIGPKDFRDPTTAWAGPDGKWRLTIGSK 275 (461)
Q Consensus 197 v~~dG~~~~~YTG~~~~~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p-~g~~~~dfRDP~V~w~~~dG~w~MviGa~ 275 (461)
..+...++|.|--.... -....+.|.++| ..|... .|+.... .+ .....-|..|+. .+..-||....
T Consensus 84 FaPk~~W~L~yQwg~~~----fsY~Ts~Dptnp--ngWSap--q~lf~g~i~~-~~~g~iD~~vI~--D~~n~yLFfa~- 151 (271)
T PF03664_consen 84 FAPKNIWYLAYQWGPAA----FSYSTSSDPTNP--NGWSAP--QPLFSGSISG-SGTGPIDQWVIC--DDTNMYLFFAG- 151 (271)
T ss_pred ecCCcEEEEEEecCCCc----ceeecCCCCCCC--ccCCCC--cccccccccC-CCCCceeeEEEe--cCCceEEEEcC-
Confidence 23678888888632111 123345676666 458763 3443311 11 124568898874 23334444432
Q ss_pred cCCceEEEEEEeC----CCCC-CEEcccccccCCCCceeeeeeEEEecc
Q 012546 276 IGKTGISLVYQTT----DFKT-YELLDEYLHAVPGTGMWECVDFYPVAI 319 (461)
Q Consensus 276 ~~~~G~v~lY~S~----Dl~~-W~~~~~l~~~~~~~gmwECPdlf~l~~ 319 (461)
+ .|. ||+|. ||-. +.-...+..+.......|.++.|+|.+
T Consensus 152 D--nGk--iYRs~~~i~nFP~~fgs~~~vvmsd~~~nLFEA~~VYkv~G 196 (271)
T PF03664_consen 152 D--NGK--IYRSSMPIGNFPGGFGSSYTVVMSDTRNNLFEAVQVYKVKG 196 (271)
T ss_pred C--CCc--EEEeccchhhCCCCCCCceEEEEecCccceeeeeEEEEEcC
Confidence 2 253 68874 2211 110011111112234799999999964
No 73
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=97.10 E-value=0.0046 Score=60.49 Aligned_cols=165 Identities=19% Similarity=0.302 Sum_probs=96.1
Q ss_pred ccccceeeeecC--CCcccCCccceEE-CCEEEEEEEeCCCCCCCCCcEEEEEEecC-CcCcccCceecCCCCcccCCCe
Q 012546 115 TWQRTSFHFQPE--KNWMNDPNGPLFY-KGWYHLFYQYNPDSAVWGNITWGHAVSAD-LIHWLYLPIAMVPDQWYDINGV 190 (461)
Q Consensus 115 ~w~Rp~fHf~P~--~gwmNDPnG~~y~-~G~YHLFYQ~nP~~~~wG~~~WGHA~S~D-LvhW~~~p~AL~Pd~~~D~~Gv 190 (461)
.|-.|+-=+.++ ..=..||. +++. +|+.||||........|......+.+|+| ..+|.... .|.++......+.
T Consensus 31 tWs~~~~v~~~~~~~~~~~~p~-~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~-~l~~~~~~~~~~~ 108 (275)
T PF13088_consen 31 TWSEPRIVADGPKPGRRYGNPS-LVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPT-DLPPGWFGNFSGP 108 (275)
T ss_dssp EEEEEEEEETSTBTTCEEEEEE-EEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEE-EEHHHCCCSCEEC
T ss_pred eeCCCEEEeeccccCCcccCcE-EEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCcc-ccccccccceecc
Confidence 455555444444 33346676 5554 99999999666555445444444599999 99998754 2332222223344
Q ss_pred EeeeEEEccCCcEEEEEcccCCCccceEEEEEecCCCCCCcceEEEcCCCceecCCCCCCCCCCCCCeeEeecCCCcEEE
Q 012546 191 WTGSATILPDGQIVMLYTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRL 270 (461)
Q Consensus 191 ~SGSavv~~dG~~~~~YTG~~~~~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP~V~w~~~dG~w~M 270 (461)
..+.++...+|++++-+.... .......+.+|.|.+ ++|+... ++.. ....--|.++ ...+|+.+|
T Consensus 109 ~~~~~i~~~~G~l~~~~~~~~-~~~~~~~~~~S~D~G----~tW~~~~--~~~~------~~~~~e~~~~-~~~dG~l~~ 174 (275)
T PF13088_consen 109 GRGPPIQLPDGRLIAPYYHES-GGSFSAFVYYSDDGG----KTWSSGS--PIPD------GQGECEPSIV-ELPDGRLLA 174 (275)
T ss_dssp SEEEEEEECTTEEEEEEEEES-SCEEEEEEEEESSTT----SSEEEEE--ECEC------SEEEEEEEEE-EETTSEEEE
T ss_pred ceeeeeEecCCCEEEEEeecc-ccCcceEEEEeCCCC----ceeeccc--cccc------cCCcceeEEE-ECCCCcEEE
Confidence 555556667998877533221 122456677899975 8998852 2210 0112235553 347888888
Q ss_pred EEeeecCCceEEEEEEeCC-CCCCEEcc
Q 012546 271 TIGSKIGKTGISLVYQTTD-FKTYELLD 297 (461)
Q Consensus 271 viGa~~~~~G~v~lY~S~D-l~~W~~~~ 297 (461)
++... . .+.+.+++|+| .++|+...
T Consensus 175 ~~R~~-~-~~~~~~~~S~D~G~TWs~~~ 200 (275)
T PF13088_consen 175 VFRTE-G-NDDIYISRSTDGGRTWSPPQ 200 (275)
T ss_dssp EEEEC-S-STEEEEEEESSTTSS-EEEE
T ss_pred EEEcc-C-CCcEEEEEECCCCCcCCCce
Confidence 87653 2 22667788877 79999743
No 74
>cd08982 GH43_3 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=96.60 E-value=0.031 Score=56.60 Aligned_cols=134 Identities=15% Similarity=0.189 Sum_probs=74.2
Q ss_pred CCcccCCccceEE-CCEEEEEEEeCCCCCCCCCcEEEEEEecCCcCcccCceecC----CCCccc----------CCCeE
Q 012546 127 KNWMNDPNGPLFY-KGWYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAMV----PDQWYD----------INGVW 191 (461)
Q Consensus 127 ~gwmNDPnG~~y~-~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL~----Pd~~~D----------~~Gv~ 191 (461)
..+.-||+ ++.+ +|+.+|+|-.. .++ ..++---+.|+..=.-.+..+. |+..|. ..++.
T Consensus 88 ~~~~IDp~-vf~DdDGk~Yl~~g~~----~~~-~i~~~eL~~d~~~~~g~~~~l~~~~~~~~~We~~g~~~~~~~~~~~~ 161 (295)
T cd08982 88 PPGLADPA-LFIDDDGRLYLYYGCS----NNY-PLRGVEVDPDTFRPIGEPVELIPGNPDKHGWERFGENNDNPDKTPWM 161 (295)
T ss_pred CCCccCCc-eEECCCCCEEEEEecC----CCC-CeEEEEECcccCCccCcceEEEeCCCCCcCeEecCcccccccCCccc
Confidence 45677997 6665 59999998421 111 1234444555542222222221 122221 13466
Q ss_pred eeeEEEccCCcEEEEEcccCCC-ccceEEEEEecCCCCCCcceEEEcCCCceecCCCCCCCCCCCCCeeEeecCCCcEEE
Q 012546 192 TGSATILPDGQIVMLYTGSTDK-SVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRL 270 (461)
Q Consensus 192 SGSavv~~dG~~~~~YTG~~~~-~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP~V~w~~~dG~w~M 270 (461)
-|..+...+|+++|+|++.... ....+.+|+|++. +-.|++...|||+..+.+. ...--...+ ....+|+|++
T Consensus 162 EGP~i~k~~G~YYL~yS~~~~~~~~Y~v~~a~s~~p----~GP~~~~~~~pil~~~~~~-~~g~GH~s~-v~~~~G~~~~ 235 (295)
T cd08982 162 EGAWMTKHNGKYYLQYAAPGTEFNTYADGVYVSDSP----LGPFTYQPHNPFSYKPGGF-ITGAGHGST-FQDKYGNYWH 235 (295)
T ss_pred cccEEEEECCEEEEEEeCCCcccCcEeEEEEEeCCC----CCCCCcCCCCccccCCCCe-EecCCcccE-EECCCCCEEE
Confidence 7777777899999999865332 2234678888765 3567776678888644321 001112334 3456788887
Q ss_pred EE
Q 012546 271 TI 272 (461)
Q Consensus 271 vi 272 (461)
+.
T Consensus 236 ~y 237 (295)
T cd08982 236 VG 237 (295)
T ss_pred EE
Confidence 75
No 75
>PF00251 Glyco_hydro_32N: Glycosyl hydrolases family 32 N-terminal domain; InterPro: IPR013148 This domain corresponds to the N-terminal domain of glycosyl transferase family 32 which forms a five bladed beta propeller structure []. ; PDB: 2AEZ_A 2ADE_A 2ADD_A 1ST8_A 2AEY_A 3UGG_A 3UGH_B 3UGF_B 1Y9M_A 1Y4W_A ....
Probab=96.46 E-value=0.04 Score=55.94 Aligned_cols=137 Identities=20% Similarity=0.295 Sum_probs=87.7
Q ss_pred cccccccccceeeeecCCCcccCCccc-----eEECCEEEEEEEeCCCCCCCCCcEEEEEEe-cCCcCcccCc---eecC
Q 012546 110 TNAMFTWQRTSFHFQPEKNWMNDPNGP-----LFYKGWYHLFYQYNPDSAVWGNITWGHAVS-ADLIHWLYLP---IAMV 180 (461)
Q Consensus 110 ~~~~~~w~Rp~fHf~P~~gwmNDPnG~-----~y~~G~YHLFYQ~nP~~~~wG~~~WGHA~S-~DLvhW~~~p---~AL~ 180 (461)
|..++.|++..-=+.|... .|.+|+ +.+++.++|||.-+-.. +...-..|+| .|.+||+..+ ++|.
T Consensus 45 S~Dlv~W~~~~~aL~P~~~--~d~~g~~SGs~~~~~~~~~~~YTg~~~~---~~~~q~~A~s~d~~~~w~k~~~~~pvi~ 119 (308)
T PF00251_consen 45 SKDLVHWEHLPVALPPDEE--YDADGCFSGSAVVDDDNLVLFYTGNNRD---GKQVQCLAYSTDDGITWTKYPQGNPVIP 119 (308)
T ss_dssp ESSSSSEEEEEEEE-SSSG--GGTTEEEEEEEEEETTCEEEEEEEEETT---TEEEEEEEEESSTTSSEEE-TTTCESBE
T ss_pred CCCCCCceeCCceEccccc--CCcCccCcceEEEECCEEEEEEeccCCC---CCeEEEEEEECCCCCceEEcCCCCcEEE
Confidence 5567788776655666643 466663 34578999999866542 1345678999 8899999843 4454
Q ss_pred CCCcccCCCeEeeeEEEccCCcEEEEEcccCCCccceEEEEEecCCCCCCcceEEEcCCCceecCCCCCCCCCCCCCeeE
Q 012546 181 PDQWYDINGVWTGSATILPDGQIVMLYTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTA 260 (461)
Q Consensus 181 Pd~~~D~~Gv~SGSavv~~dG~~~~~YTG~~~~~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP~V~ 260 (461)
.....+....-+..++..++|+++|+..+... ....+.+..|+|+ ++|+.. .++...... ....|--|-++
T Consensus 120 ~~p~~~~~~~RDP~v~~~~~~~~~m~~g~~~~-~~g~i~~y~S~Dl-----~~W~~~--~~l~~~~~~-~g~~~ECPdlf 190 (308)
T PF00251_consen 120 EPPPGDTTDFRDPKVFWREDGRWYMLLGAGRD-GRGCILLYTSDDL-----IHWEYL--GPLFIPGDN-GGGMWECPDLF 190 (308)
T ss_dssp SSSTTSCTSEEEEEEEEECTTEEEEEEEEEET-TEEEEEEEEESSS-----SSEEEE--EEESEEETT-TSSEEEEEEEE
T ss_pred ecccCCCCccccCeEEEecCCEEEEEEecccc-CcceEEEEEcCCc-----ccCcee--Ccccccccc-cccccccceEE
Confidence 22222566788999866678999999877654 3345667778875 899986 344332221 12355667764
No 76
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=96.23 E-value=0.071 Score=52.14 Aligned_cols=146 Identities=18% Similarity=0.093 Sum_probs=79.0
Q ss_pred CEEEEEEEeCCCCCCCCCcEEEEEEe--cCC-cCcccCceecCCCCcccCCCeEeeeEEEccCCcEEEEEcccCCC---c
Q 012546 141 GWYHLFYQYNPDSAVWGNITWGHAVS--ADL-IHWLYLPIAMVPDQWYDINGVWTGSATILPDGQIVMLYTGSTDK---S 214 (461)
Q Consensus 141 G~YHLFYQ~nP~~~~wG~~~WGHA~S--~DL-vhW~~~p~AL~Pd~~~D~~Gv~SGSavv~~dG~~~~~YTG~~~~---~ 214 (461)
|+...|+.. +...+.....-.+| +|. .+|...-.+..+. .....+..++++.+++|++++||+..... .
T Consensus 1 G~l~a~~~~---~~~~~~~d~~i~~S~s~D~G~tWs~~~~v~~~~--~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~ 75 (275)
T PF13088_consen 1 GRLLAVWEG---GSDEGAIDIVIRRSRSTDGGKTWSEPRIVADGP--KPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWS 75 (275)
T ss_dssp SEEEEEEEE---SSCSCCEEEEEEEECCCCCTTEEEEEEEEETST--BTTCEEEEEEEEEETTSEEEEEEEEEETTESCC
T ss_pred CeEEEEEEC---CcccCCCCEEEEEEEeeCCCCeeCCCEEEeecc--ccCCcccCcEEEEeCCCCEEEEEEEccCCCCCC
Confidence 455666665 33334444555555 985 7898754433333 12345677777767899999999544321 1
Q ss_pred cceEEEEEecCCCCCCcceEEEcCCCceecCCCCCCCCCCCCCeeEeecCCCcEEEEEeeecCCceEEEEEEeCC-CCCC
Q 012546 215 VQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKIGKTGISLVYQTTD-FKTY 293 (461)
Q Consensus 215 ~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP~V~w~~~dG~w~MviGa~~~~~G~v~lY~S~D-l~~W 293 (461)
.......+|.|.+ ++|.... .|...+........+.+-+. -.+|.+++..-........+.++.|+| .+.|
T Consensus 76 ~~~~~~~~S~D~G----~TWs~~~--~l~~~~~~~~~~~~~~~~i~--~~~G~l~~~~~~~~~~~~~~~~~~S~D~G~tW 147 (275)
T PF13088_consen 76 GSRIYYSRSTDGG----KTWSEPT--DLPPGWFGNFSGPGRGPPIQ--LPDGRLIAPYYHESGGSFSAFVYYSDDGGKTW 147 (275)
T ss_dssp TCEEEEEEESSTT----SS-EEEE--EEHHHCCCSCEECSEEEEEE--ECTTEEEEEEEEESSCEEEEEEEEESSTTSSE
T ss_pred ceeEEEEEECCCC----CCCCCcc--ccccccccceeccceeeeeE--ecCCCEEEEEeeccccCcceEEEEeCCCCcee
Confidence 1222238899975 8999863 23221111111122333232 258877776322222334455555655 7899
Q ss_pred EEcccc
Q 012546 294 ELLDEY 299 (461)
Q Consensus 294 ~~~~~l 299 (461)
+....+
T Consensus 148 ~~~~~~ 153 (275)
T PF13088_consen 148 SSGSPI 153 (275)
T ss_dssp EEEEEC
T ss_pred eccccc
Confidence 987654
No 77
>cd08987 GH62 Glycosyl hydrolase family 62, characterized arabinofuranosidases. The glycosyl hydrolase family 62 includes eukaryotic and prokaryotic enzymes, most of which are characterized arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. The enzyme does not act on xylose moieties in xylan that are adorned with an arabinose side chain at both O2 and O3 positions, nor does it display any non-specific arabinofuranosidase activity. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose or xylan. The catalytic mechanism of this family has not yet been determined, but is predicted to display a single displacement or inverting mechanism, based on its location in the same carbohydrate-active enzymes database (CAZY) clan (Clan F) as that occupied by GH43, a well characterized inverting family. Similarly, the catalytic residues are predicted fr
Probab=96.04 E-value=0.17 Score=51.42 Aligned_cols=143 Identities=12% Similarity=0.165 Sum_probs=77.5
Q ss_pred cCCccceEE--CCEEEEEEEeCCCCCCCCCcEEEEEEecCCcC---cccCceecCCCCcccCCCeEeeeEEEccCCcEEE
Q 012546 131 NDPNGPLFY--KGWYHLFYQYNPDSAVWGNITWGHAVSADLIH---WLYLPIAMVPDQWYDINGVWTGSATILPDGQIVM 205 (461)
Q Consensus 131 NDPnG~~y~--~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvh---W~~~p~AL~Pd~~~D~~Gv~SGSavv~~dG~~~~ 205 (461)
--|. ++|+ +++|+|+||+.+ ...+||+|..+ |....+.......-...|..+-.+ +.+|++.||
T Consensus 79 wAPq-Vfyf~pk~kwYL~Yq~~~---------~~yaTs~dp~~P~~ws~~qpl~~~~~~~~~~~~ID~~v-I~Dd~~~YL 147 (303)
T cd08987 79 VAPQ-VFYFAPQNKWYLIYQWWP---------AAYSTNSDISNPNGWSAPQPLFSGTPNGSPGGWIDFWV-ICDDTNCYL 147 (303)
T ss_pred ccCE-EeeeccCCEEEEEEecCc---------eEEEeCCCCCCCCccCCCcccccCcccCCCCCccceeE-EeCCCCEEE
Confidence 3665 6655 699999999732 45899999765 765433333221112234455555 567999999
Q ss_pred EEcccCCCccceEEEEEecCCCCCCcceEEEcCCCceecCCCCCCCCCCCCCeeEeecCCC--cEEEEEeeecCCce-EE
Q 012546 206 LYTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTAWAGPDG--KWRLTIGSKIGKTG-IS 282 (461)
Q Consensus 206 ~YTG~~~~~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP~V~w~~~dG--~w~MviGa~~~~~G-~v 282 (461)
||.+... .+..|..... .|-....+.+......-...-|-=|.| .+ .+| +|+|++-+.....+ -.
T Consensus 148 ff~~dnG----~iyra~~~~~------nFp~~~~~~~~~~~~~~~~~lfEa~~V-yk-v~G~~~YlmiveA~g~~~~rYf 215 (303)
T cd08987 148 FFSDDNG----KLYRSSTTLG------NFPNGGTETVIIMSDSNKNNLFEASNV-YK-VKGQNQYLLIVEAIGSDGGRYF 215 (303)
T ss_pred EEecCCC----eEEEEecchh------hCCCCCCccEEEecCCCccccceeeEE-EE-ECCCeEEEEEEEecCCCCCCeE
Confidence 9987532 3334432211 111111122221110111134566888 44 445 99999977632122 22
Q ss_pred EEEEeCCCC-CCEEc
Q 012546 283 LVYQTTDFK-TYELL 296 (461)
Q Consensus 283 ~lY~S~Dl~-~W~~~ 296 (461)
.-++|+++- .|+.+
T Consensus 216 rs~Ts~Sl~GpWt~~ 230 (303)
T cd08987 216 RSWTATSLDGPWTPL 230 (303)
T ss_pred EEEEcCCCCCCceec
Confidence 236777764 78876
No 78
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=92.79 E-value=0.49 Score=48.57 Aligned_cols=90 Identities=26% Similarity=0.472 Sum_probs=50.6
Q ss_pred eeEEEccCCcEEEEEcccCCCcc-ceEEEEEecCCCCCCcceEEEcCCCceecCCCCCCCCCCCCCeeE-eecCCCcEEE
Q 012546 193 GSATILPDGQIVMLYTGSTDKSV-QVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTA-WAGPDGKWRL 270 (461)
Q Consensus 193 GSavv~~dG~~~~~YTG~~~~~~-q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP~V~-w~~~dG~w~M 270 (461)
||.++.+||.+++=-.+..++.. .+-.+-||.|.+ .+|+-..+. .....+||.|+ | ++|+-.|
T Consensus 124 GSGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS~d~g----~~W~lskg~---------s~~gC~~psv~EW--e~gkLlM 188 (310)
T PF13859_consen 124 GSGVVMEDGTLVFPVQATKKNGDGTVSLIIYSTDDG----KTWKLSKGM---------SPAGCSDPSVVEW--EDGKLLM 188 (310)
T ss_dssp EE-EE-TTS-EEEEEEEEETT---EEEEEEEESSTT----SS-EE-S-------------TT-EEEEEEEE---TTEEEE
T ss_pred CCceEEcCCCEEEEEeeeccCccceEEEEEEECCCc----cceEecccc---------CCCCcceEEEEec--cCCeeEE
Confidence 44455679998887777665555 366788998854 799975321 12467899997 5 4788777
Q ss_pred EEeeecCCceEEEEEEeCCC-CCCEEccccc
Q 012546 271 TIGSKIGKTGISLVYQTTDF-KTYELLDEYL 300 (461)
Q Consensus 271 viGa~~~~~G~v~lY~S~Dl-~~W~~~~~l~ 300 (461)
+.... .|.--+|+|.|. ..|+..-.-+
T Consensus 189 ~~~c~---~g~rrVYeS~DmG~tWtea~gtl 216 (310)
T PF13859_consen 189 MTACD---DGRRRVYESGDMGTTWTEALGTL 216 (310)
T ss_dssp EEE-T---TS---EEEESSTTSS-EE-TTTT
T ss_pred EEecc---cceEEEEEEcccceehhhccCcc
Confidence 75432 255568999996 7899743333
No 79
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=92.43 E-value=9.5 Score=38.79 Aligned_cols=146 Identities=15% Similarity=0.160 Sum_probs=80.9
Q ss_pred CcEEEEEEecC-CcCcccCceecCCCCcccCCCeEeeeEEEccCCcEEEEEcccCCC----------ccceEEEEEecCC
Q 012546 158 NITWGHAVSAD-LIHWLYLPIAMVPDQWYDINGVWTGSATILPDGQIVMLYTGSTDK----------SVQVQNLAYPADP 226 (461)
Q Consensus 158 ~~~WGHA~S~D-LvhW~~~p~AL~Pd~~~D~~Gv~SGSavv~~dG~~~~~YTG~~~~----------~~q~q~lA~S~D~ 226 (461)
.+...-++|.| ..+|.... ++..... ....++..+++.+.+|+++|||...... ....+.+.+|.|.
T Consensus 45 ~~~iv~~~S~D~G~tW~~~~-~i~~~~~-~~~~~~~p~~v~~~~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~S~D~ 122 (351)
T cd00260 45 AIDIVARRSTDGGKTWSPST-VISDGDG-KSSRVKDPTVVVDGLGRVFLLVGSFPNGEGEDNDYAGPSNAYLVLVYSDDD 122 (351)
T ss_pred ccceeEEEeccCCCcccccE-EehhcCC-CCCcEEcceEEEcCCCCEEEEEEECCCcccccccccCCCceEEEEEEEEcC
Confidence 46677788887 68998853 4444322 2346778888765459999999765421 2345667888887
Q ss_pred CCCCcceEEEcCCCceecCC--CCCCCCCCCCC--eeEeecCCCcEEEEEeeecCC--ceEEEEEEeCCCCCCEEccccc
Q 012546 227 SDPLLLDWVKYPGNPVLVPP--RHIGPKDFRDP--TTAWAGPDGKWRLTIGSKIGK--TGISLVYQTTDFKTYELLDEYL 300 (461)
Q Consensus 227 ~d~lL~~W~K~~~nPVl~~p--~g~~~~dfRDP--~V~w~~~dG~w~MviGa~~~~--~G~v~lY~S~Dl~~W~~~~~l~ 300 (461)
+ .+|.+. ..+.... ..+. .-++-| -+. -.+|++++.+-..... .-..++|..++.++|++....
T Consensus 123 G----~tW~~p--~~l~~~~~~~~~~-~~~~~~g~gi~--l~~Grlv~p~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~- 192 (351)
T cd00260 123 G----ITWSSP--RDLTPSVKGDNWA-ALFTGPGSGIQ--MKDGRLVFPVYGGNAGGRVSSAIIYSDDSGKTWKLGEGV- 192 (351)
T ss_pred C----ceecCC--ccCCccccCccee-EEEecCcCeEE--ecCCcEEEEEEEEcCCCCEEEEEEEECCCCCCcEECCCC-
Confidence 5 899863 1222111 1110 112223 221 2478877765443221 223445544557999864332
Q ss_pred ccCCCCceeeeeeEEEec
Q 012546 301 HAVPGTGMWECVDFYPVA 318 (461)
Q Consensus 301 ~~~~~~gmwECPdlf~l~ 318 (461)
.. ..++.| |.++++.
T Consensus 193 ~~--~~~~~e-~~i~el~ 207 (351)
T cd00260 193 ND--AGGCSE-CSVVELS 207 (351)
T ss_pred CC--CCCCcC-CEEEEec
Confidence 11 123456 4577775
No 80
>COG3940 Predicted beta-xylosidase [General function prediction only]
Probab=91.74 E-value=1.2 Score=43.62 Aligned_cols=105 Identities=26% Similarity=0.454 Sum_probs=66.6
Q ss_pred ceEECC-EEEEEEEeCCCCCCCCCcEEEEEEecCCcCcccCceec-CCCCcccCCCeE--eeeEEEccCCcEEEEEcccC
Q 012546 136 PLFYKG-WYHLFYQYNPDSAVWGNITWGHAVSADLIHWLYLPIAM-VPDQWYDINGVW--TGSATILPDGQIVMLYTGST 211 (461)
Q Consensus 136 ~~y~~G-~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvhW~~~p~AL-~Pd~~~D~~Gv~--SGSavv~~dG~~~~~YTG~~ 211 (461)
.++++| .|+++-|..|+-. |+...-.|.-.+-.+-+-.|+.| .|.-+|+..|.| .|-+++..+|++.+-|++..
T Consensus 137 tfeh~gk~yyvwaqkdp~i~--gnsniyiaemenpwtikgepvmlskpe~dwe~~gfwvnegpav~k~ngkifi~ysasa 214 (324)
T COG3940 137 TFEHNGKLYYVWAQKDPNIK--GNSNIYIAEMENPWTIKGEPVMLSKPELDWEIKGFWVNEGPAVLKKNGKIFITYSASA 214 (324)
T ss_pred eeeeCCEEEEEEeccCCCcc--CCcceEEEeccCCceecCceEEecCCCcccEEEEEEecCCceEEEECCEEEEEEeccc
Confidence 466777 6888889888643 45445555545443333344444 344466777866 68888888999999999876
Q ss_pred CCccceEEEEEec---CCCCCCcceEEEcCCCceecC
Q 012546 212 DKSVQVQNLAYPA---DPSDPLLLDWVKYPGNPVLVP 245 (461)
Q Consensus 212 ~~~~q~q~lA~S~---D~~d~lL~~W~K~~~nPVl~~ 245 (461)
.+-..+.++-... |+-|| ..|+|.+ .||+..
T Consensus 215 td~nycmgllwanen~dlldp--aswtksp-tpvf~t 248 (324)
T COG3940 215 TDVNYCMGLLWANENSDLLDP--ASWTKSP-TPVFKT 248 (324)
T ss_pred cccceeeeeeeecccCCcCCc--hhcccCC-Ccceee
Confidence 5433344444433 33333 5899974 788864
No 81
>PF13810 DUF4185: Domain of unknown function (DUF4185)
Probab=85.65 E-value=19 Score=37.07 Aligned_cols=160 Identities=20% Similarity=0.182 Sum_probs=88.2
Q ss_pred cccCCccceEECCEEEEEEEeCCC----CCCCCCcEEEEEEecC-CcCcccCceecCCCCcccCCCe------EeeeEEE
Q 012546 129 WMNDPNGPLFYKGWYHLFYQYNPD----SAVWGNITWGHAVSAD-LIHWLYLPIAMVPDQWYDINGV------WTGSATI 197 (461)
Q Consensus 129 wmNDPnG~~y~~G~YHLFYQ~nP~----~~~wG~~~WGHA~S~D-LvhW~~~p~AL~Pd~~~D~~Gv------~SGSavv 197 (461)
..-=|.+.|-.+|+-+|.|...-. ...|..-.=+.+.|+| .-+|+..+.++.+.... ..|+ |-=++..
T Consensus 93 ~t~iPt~~I~v~~~~Yl~~msv~~wg~~~G~W~tn~S~i~~S~D~G~tW~~~~~~~~~~~~~-~~g~~~~~~~fq~~a~~ 171 (316)
T PF13810_consen 93 TTVIPTDGISVGGRQYLHYMSVRNWGNVPGSWTTNYSGIAYSDDNGETWTVVPGTIRPNSPF-HPGFNQGNWNFQMAAFV 171 (316)
T ss_pred eEEcccceEEECCcEEEEEEEEccCCCCCCccccCceEEEEeCCCCCCceeCCCcccccccc-cCCcccccccccccccc
Confidence 333477888889998899975421 1123222347899999 88999998666555311 0121 1112333
Q ss_pred ccCCcEEEEEcccCCCccceEEEEEe--cCCCCCC------cce--EEEcCC--CceecCCCCCCCCCCCCCeeEeecCC
Q 012546 198 LPDGQIVMLYTGSTDKSVQVQNLAYP--ADPSDPL------LLD--WVKYPG--NPVLVPPRHIGPKDFRDPTTAWAGPD 265 (461)
Q Consensus 198 ~~dG~~~~~YTG~~~~~~q~q~lA~S--~D~~d~l------L~~--W~K~~~--nPVl~~p~g~~~~dfRDP~V~w~~~d 265 (461)
..||-+|+|=|...+.+ ...||.- +|..|+. ... |.+... .||+..+- ---+|.|.+..
T Consensus 172 ~~dgyVYv~gt~~~R~g--~~~LaRV~~~~i~d~~ayeyw~g~~~~W~~~~~~atpv~~~~v-------gElSv~~~~~~ 242 (316)
T PF13810_consen 172 KDDGYVYVYGTPFGRNG--GVYLARVPPDDILDRSAYEYWDGSGGGWSWGNPPATPVLPGPV-------GELSVRYNEYL 242 (316)
T ss_pred CCCCEEEEEeCCCCCCC--cEEEEEeCHHHCCChhhccccCCCCcccccCCCCccccccCCc-------cceEEEEeCCC
Confidence 35776777766544322 2334432 1221210 012 654321 35654332 22466677778
Q ss_pred CcEEEEEeeecCCceEEEEEEeCCCC-CCEEccccc
Q 012546 266 GKWRLTIGSKIGKTGISLVYQTTDFK-TYELLDEYL 300 (461)
Q Consensus 266 G~w~MviGa~~~~~G~v~lY~S~Dl~-~W~~~~~l~ 300 (461)
|+|+|+.... ..+.|.+.++++.. .|.....+.
T Consensus 243 gk~Vl~~~~~--~~~~I~~RtA~~P~GpWs~~~~l~ 276 (316)
T PF13810_consen 243 GKWVLSYFDA--GTGGIVLRTAPSPTGPWSEPKPLV 276 (316)
T ss_pred CEEEEEEecc--cCCcEEEEecCCCCCCCCCCeeEE
Confidence 9999997532 33567777777776 577544443
No 82
>PTZ00334 trans-sialidase; Provisional
Probab=83.73 E-value=7.1 Score=44.94 Aligned_cols=87 Identities=21% Similarity=0.365 Sum_probs=55.2
Q ss_pred eeEEEccCCcEEEEEcccCCCccceEEEEEecCCCCCCcceEEEcCCCceecCCCCCCCCCCCCCeeE-eecCCCcEEEE
Q 012546 193 GSATILPDGQIVMLYTGSTDKSVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGPKDFRDPTTA-WAGPDGKWRLT 271 (461)
Q Consensus 193 GSavv~~dG~~~~~YTG~~~~~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~~dfRDP~V~-w~~~dG~w~Mv 271 (461)
||.++.+||.+++=-.+..+++..+-.+-||.|. ..|+-..+ ....+.+||.|+ | ++|+-.|+
T Consensus 263 GSGI~medGTLVFPv~a~~~~g~~vslIiYS~d~-----g~W~ls~g---------~s~~gC~~P~I~EW--e~gkLlM~ 326 (780)
T PTZ00334 263 GSGVQMKDGTLVFPVEGTKKDGKAVSLIIYSSAT-----ESGNLSKG---------MSADGCSDPSVVEW--KEGKLMMM 326 (780)
T ss_pred cCeEEecCCeEEEEEEEEcCCCCEEEEEEEecCC-----CCeEEcCC---------CCCCCCCCCEEEEE--cCCeEEEE
Confidence 3445568999876555654444445567889875 34864322 222467999987 5 35787776
Q ss_pred EeeecCCceEEEEEEeCCC-CCCEEccc
Q 012546 272 IGSKIGKTGISLVYQTTDF-KTYELLDE 298 (461)
Q Consensus 272 iGa~~~~~G~v~lY~S~Dl-~~W~~~~~ 298 (461)
.... .|.-.||+|.|. ..|+..-.
T Consensus 327 t~C~---dG~RrVYES~DmG~tWtEAlG 351 (780)
T PTZ00334 327 TACD---DGRRRVYESGDKGDSWTEALG 351 (780)
T ss_pred EEeC---CCCEEEEEECCCCCChhhCCC
Confidence 5432 244468999996 78986433
No 83
>PF13810 DUF4185: Domain of unknown function (DUF4185)
Probab=76.32 E-value=13 Score=38.37 Aligned_cols=95 Identities=18% Similarity=0.326 Sum_probs=55.6
Q ss_pred ccCCcEEEEEcccCCCc-------cceEEEEEecCCCCCCcceEEEcCCCceecCC---CCCCCCCCCCCeeEeecCCCc
Q 012546 198 LPDGQIVMLYTGSTDKS-------VQVQNLAYPADPSDPLLLDWVKYPGNPVLVPP---RHIGPKDFRDPTTAWAGPDGK 267 (461)
Q Consensus 198 ~~dG~~~~~YTG~~~~~-------~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p---~g~~~~dfRDP~V~w~~~dG~ 267 (461)
..+|+.||.|..+..-+ .....+|+|.|.+ .+|++.+. .+-... ++.....+.....++. .++.
T Consensus 102 ~v~~~~Yl~~msv~~wg~~~G~W~tn~S~i~~S~D~G----~tW~~~~~-~~~~~~~~~~g~~~~~~~fq~~a~~-~~dg 175 (316)
T PF13810_consen 102 SVGGRQYLHYMSVRNWGNVPGSWTTNYSGIAYSDDNG----ETWTVVPG-TIRPNSPFHPGFNQGNWNFQMAAFV-KDDG 175 (316)
T ss_pred EECCcEEEEEEEEccCCCCCCccccCceEEEEeCCCC----CCceeCCC-cccccccccCCcccccccccccccc-CCCC
Confidence 45899999999875321 1245699999975 89999742 222221 1211101112222232 3556
Q ss_pred EEEEEeeecCCceEEEEEEe-----CCCCCCEEccc
Q 012546 268 WRLTIGSKIGKTGISLVYQT-----TDFKTYELLDE 298 (461)
Q Consensus 268 w~MviGa~~~~~G~v~lY~S-----~Dl~~W~~~~~ 298 (461)
|+-++|...++.|.+.|+|- .|+..||+-..
T Consensus 176 yVYv~gt~~~R~g~~~LaRV~~~~i~d~~ayeyw~g 211 (316)
T PF13810_consen 176 YVYVYGTPFGRNGGVYLARVPPDDILDRSAYEYWDG 211 (316)
T ss_pred EEEEEeCCCCCCCcEEEEEeCHHHCCChhhccccCC
Confidence 77777876566677788875 35666776543
No 84
>COG3507 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=69.60 E-value=4.2 Score=44.73 Aligned_cols=53 Identities=17% Similarity=0.135 Sum_probs=37.8
Q ss_pred CCceecCCCCCCCCCCCCCeeEeecCCCcEEEEEeeecCCceEEEEEEeCCCCCCEEcccccc
Q 012546 239 GNPVLVPPRHIGPKDFRDPTTAWAGPDGKWRLTIGSKIGKTGISLVYQTTDFKTYELLDEYLH 301 (461)
Q Consensus 239 ~nPVl~~p~g~~~~dfRDP~V~w~~~dG~w~MviGa~~~~~G~v~lY~S~Dl~~W~~~~~l~~ 301 (461)
.|||+.. ..=||.++ +....|||..++- +-.|-+.+++|+||+||+++...+.
T Consensus 22 ~NPvl~g-------f~PDpSi~--rvg~dyYia~stF-~~fpGl~i~hS~DL~nW~~v~tpl~ 74 (549)
T COG3507 22 LNPVLAG-------FNPDPSIV--RVGDDYYIATSTF-EWFPGLAIHHSRDLVNWTLVSTPLI 74 (549)
T ss_pred cCccccc-------cCCCCceE--ecCCceEEEcceE-EEcCceeeeccccccCcEEeccccc
Confidence 4888752 22689985 3566799887743 3344488999999999999887543
No 85
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=59.90 E-value=19 Score=31.18 Aligned_cols=30 Identities=17% Similarity=0.296 Sum_probs=24.8
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 012546 28 TPASHRKPFKGFAAILASAIFLLSLVALII 57 (461)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (461)
.|....+.|..++.|+.+++++.+|+++++
T Consensus 9 ~~~~~g~sW~~LVGVv~~al~~SlLIalaa 38 (102)
T PF15176_consen 9 GPGEGGRSWPFLVGVVVTALVTSLLIALAA 38 (102)
T ss_pred CCCCCCcccHhHHHHHHHHHHHHHHHHHHH
Confidence 344457899999999999999999998876
No 86
>PF02435 Glyco_hydro_68: Levansucrase/Invertase; InterPro: IPR003469 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family consists of the glycosyl hydrolase 68 family (GH68 from CAZY), including several bacterial levansucrase enzymes, and invertase from Zymomonas. Levansucrase (2.4.1.10 from EC), also known as beta-D-fructofuranosyl transferase, catalyses the conversion of sucrose and (2,6-beta-D-fructosyl)(N) to glucose and (2,6-beta-D-fructosyl)(N+1), where other sugars can also act as fructosyl acceptors. Invertase, or extracellular sucrase (3.2.1.26 from EC), catalyses the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides.; GO: 0050053 levansucrase activity, 0009758 carbohydrate utilization; PDB: 2YFR_A 2YFT_A 2YFS_A 1W18_A 3OM7_B 3OM4_C 3OM6_D 3OM5_A 3OM2_A 1PT2_A ....
Probab=59.62 E-value=1.8e+02 Score=31.50 Aligned_cols=128 Identities=17% Similarity=0.153 Sum_probs=79.1
Q ss_pred CCEEEEEEEeCCCC-CCCC-----CcEEEEEEecC----CcCcccCceecCCCCcccC-------CCeEeeeEEEc-cCC
Q 012546 140 KGWYHLFYQYNPDS-AVWG-----NITWGHAVSAD----LIHWLYLPIAMVPDQWYDI-------NGVWTGSATIL-PDG 201 (461)
Q Consensus 140 ~G~YHLFYQ~nP~~-~~wG-----~~~WGHA~S~D----LvhW~~~p~AL~Pd~~~D~-------~Gv~SGSavv~-~dG 201 (461)
+|+-.|||...-.+ ..-. -..-|++.+.| +-.|+.+-+.+.+|+.+-+ ...-...++.+ .+|
T Consensus 143 dg~I~LfYTav~~~~~~~~~Q~l~t~~~g~~~~d~~~v~i~g~~~~~~lfe~DG~~Yqt~~Q~~~~afRDP~~f~DP~~G 222 (428)
T PF02435_consen 143 DGSIQLFYTAVGFSDTPTFRQRLATATLGLIHADDDGVWITGFSNHHELFEGDGKHYQTYEQNPGYAFRDPHVFEDPEDG 222 (428)
T ss_dssp TSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEECSTEEEEEEEEEEEEEES--SSSB--HHHHHH---EEEEEEEETTTT
T ss_pred CCeEEEEEeecccCCCcchhhhhhhHhcCeeecCCCceeEccccceeEeeccchhhhhChhhcCCccccCCeeEECCCCC
Confidence 69999999873221 1111 13557777777 5567777778888874332 34567888776 489
Q ss_pred cEEEEEcccCCC--------------------------------ccceEEEEEecCCCCCCcceEEEcCCCceecCCCCC
Q 012546 202 QIVMLYTGSTDK--------------------------------SVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHI 249 (461)
Q Consensus 202 ~~~~~YTG~~~~--------------------------------~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~ 249 (461)
+.||+|.|++.. ..-.++||...+.. +..|+-+ .|+|... ++
T Consensus 223 ~~YLvFEgNtg~~~~~~~~g~~d~~~~~~~~~~~~~~~~~~A~~~ng~iGi~~~~~~~---~~~w~~~--~PL~~a~-~v 296 (428)
T PF02435_consen 223 KRYLVFEGNTGGERNWANYGGDDLGNVPGDPKLENNDNKSGASYANGAIGIAKLTNDD---GTVWELL--PPLLSAN-GV 296 (428)
T ss_dssp EEEEEEEEEBSTTSBGGGT-SHHHHHHHHHHHHHHSCCHHHHHH-EEEEEEEEESTTT---TSEEEEE--EEEEEET-TT
T ss_pred cEEEEEecccCCCCCccccCccccccccccccccccccccccceecceeeeEEecCCC---CCccEEe--Ccceecc-cc
Confidence 999999987621 01246788877642 2678887 5888642 11
Q ss_pred CCCCCCCCeeEeecCCCcEEEEEeeec
Q 012546 250 GPKDFRDPTTAWAGPDGKWRLTIGSKI 276 (461)
Q Consensus 250 ~~~dfRDP~V~w~~~dG~w~MviGa~~ 276 (461)
. ..--=|.|+. .+|+||++..++.
T Consensus 297 ~-de~ERP~iv~--~~gkyYLFt~s~~ 320 (428)
T PF02435_consen 297 N-DELERPHIVF--MNGKYYLFTISHL 320 (428)
T ss_dssp B-S-EEEEEEEE--ETTEEEEEEEEEG
T ss_pred c-ccccCCcEEE--ECCEEEEEEEecc
Confidence 1 1122288864 5899999988763
No 87
>PF03664 Glyco_hydro_62: Glycosyl hydrolase family 62 ; InterPro: IPR005193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha -L-arabinofuranosidases (3.2.1.55 from EC) which are all members of glycoside hydrolase family 62 (GH62 from CAZY). This enzyme hydrolyzed aryl alpha-L-arabinofuranosides and cleaves arabinosyl side chains from arabinoxylan and arabinan.; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process
Probab=45.88 E-value=3.3e+02 Score=27.50 Aligned_cols=71 Identities=18% Similarity=0.385 Sum_probs=40.5
Q ss_pred cCCccceEE--CCEEEEEEEeCCCCCCCCCcEEEEEEecCCcC---cccCceecCCCCcc-cCCCeEeeeEEEccCCcEE
Q 012546 131 NDPNGPLFY--KGWYHLFYQYNPDSAVWGNITWGHAVSADLIH---WLYLPIAMVPDQWY-DINGVWTGSATILPDGQIV 204 (461)
Q Consensus 131 NDPnG~~y~--~G~YHLFYQ~nP~~~~wG~~~WGHA~S~DLvh---W~~~p~AL~Pd~~~-D~~Gv~SGSavv~~dG~~~ 204 (461)
--|. ++|+ +..+.|.||+.+ ......+|+|.-+ |.... .|..+.-- ...|-.+--+ |-.+-..|
T Consensus 77 vAP~-vFYFaPk~~W~L~yQwg~-------~~fsY~Ts~DptnpngWSapq-~lf~g~i~~~~~g~iD~~v-I~D~~n~y 146 (271)
T PF03664_consen 77 VAPQ-VFYFAPKNIWYLAYQWGP-------AAFSYSTSSDPTNPNGWSAPQ-PLFSGSISGSGTGPIDQWV-ICDDTNMY 146 (271)
T ss_pred ccce-EEEecCCcEEEEEEecCC-------CcceeecCCCCCCCccCCCCc-ccccccccCCCCCceeeEE-EecCCceE
Confidence 3465 6666 789999999654 3345678888765 75422 23222110 1123333333 33456688
Q ss_pred EEEcccC
Q 012546 205 MLYTGST 211 (461)
Q Consensus 205 ~~YTG~~ 211 (461)
||+++..
T Consensus 147 LFfa~Dn 153 (271)
T PF03664_consen 147 LFFAGDN 153 (271)
T ss_pred EEEcCCC
Confidence 9988864
No 88
>PF10898 DUF2716: Protein of unknown function (DUF2716); InterPro: IPR020323 This entry represents a group of uncharacterised proteins.
Probab=37.15 E-value=23 Score=32.51 Aligned_cols=37 Identities=24% Similarity=0.576 Sum_probs=27.8
Q ss_pred ccccccceeeeecCCCcccCC----ccceEECCEEEEEEEe
Q 012546 113 MFTWQRTSFHFQPEKNWMNDP----NGPLFYKGWYHLFYQY 149 (461)
Q Consensus 113 ~~~w~Rp~fHf~P~~gwmNDP----nG~~y~~G~YHLFYQ~ 149 (461)
.|.||.+.|-|.|..---.|+ .-++|=+|-||+|.+-
T Consensus 80 aLDWQH~cy~~~P~~~~~~~e~~~W~vpv~PdGDYyfF~~~ 120 (143)
T PF10898_consen 80 ALDWQHECYWFNPHRHAEKDEFGEWPVPVYPDGDYYFFIDK 120 (143)
T ss_pred EEecCCCCEEEChhhccccccCCCccccccCCCCeEEEEec
Confidence 458999999999866554433 2367779999999974
No 89
>KOG0228 consensus Beta-fructofuranosidase (invertase) [Carbohydrate transport and metabolism]
Probab=32.94 E-value=1.5e+02 Score=32.78 Aligned_cols=79 Identities=14% Similarity=0.183 Sum_probs=45.9
Q ss_pred cCCcEEEEEcccCCC---ccceEEEEEecCCCCCCcceEEEcCCCceecCCCCCCC-CCCCCCeeEeecCCCcEEEEEee
Q 012546 199 PDGQIVMLYTGSTDK---SVQVQNLAYPADPSDPLLLDWVKYPGNPVLVPPRHIGP-KDFRDPTTAWAGPDGKWRLTIGS 274 (461)
Q Consensus 199 ~dG~~~~~YTG~~~~---~~q~q~lA~S~D~~d~lL~~W~K~~~nPVl~~p~g~~~-~dfRDP~V~w~~~dG~w~MviGa 274 (461)
.+|.++|||-=+-++ +..+=+.|+|+|+ ++|+.+ .|.|.|....+. .-|---.|+ ..+|+=.|+..+
T Consensus 68 ykG~yHLFyQyNP~gavwg~ivWGHavSkDL-----inW~~l--p~Ai~Ps~~~ding~wSGSati--~~~~~~vilytg 138 (571)
T KOG0228|consen 68 YKGKYHLFYQYNPKGAVWGNIVWGHAVSKDL-----INWEAL--PPAIAPSEWFDINGCWSGSATI--DPNNSPVILYTG 138 (571)
T ss_pred cCcEEEEEEecCCCCceeeeeEeeeecchhh-----cccccc--CcccCCCCccccCccccceEEE--ccCCCeEEEecc
Confidence 589999999876543 2344578999996 999987 466665431110 112222221 355666666544
Q ss_pred ecCCceEEEEEE
Q 012546 275 KIGKTGISLVYQ 286 (461)
Q Consensus 275 ~~~~~G~v~lY~ 286 (461)
...+..+|..|.
T Consensus 139 ~d~~~rqVqn~a 150 (571)
T KOG0228|consen 139 IDPNNRQVQNYA 150 (571)
T ss_pred cCcCceEEEEEe
Confidence 433445666664
No 90
>COG1621 SacC Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism]
Probab=31.24 E-value=3.9e+02 Score=29.48 Aligned_cols=117 Identities=18% Similarity=0.168 Sum_probs=62.7
Q ss_pred cccccccceeeeecCCCcccCCcc-----ceEECCEEEEEEEeCCCCCCCCCc-EEEEEEecCCcCcccC-c-eec-CCC
Q 012546 112 AMFTWQRTSFHFQPEKNWMNDPNG-----PLFYKGWYHLFYQYNPDSAVWGNI-TWGHAVSADLIHWLYL-P-IAM-VPD 182 (461)
Q Consensus 112 ~~~~w~Rp~fHf~P~~gwmNDPnG-----~~y~~G~YHLFYQ~nP~~~~wG~~-~WGHA~S~DLvhW~~~-p-~AL-~Pd 182 (461)
.++.|+.-.-=+.|.. | +|=+| .+.++|.--+||.-|-....+.+. .=.-|.|+|.++++.. + +.+ .|+
T Consensus 79 Dlv~W~~~piaL~Pd~-~-~d~~g~ySGSAV~~~~~l~lfytg~v~~~~~~r~~~Q~iA~s~dg~~f~K~~~~~i~~~p~ 156 (486)
T COG1621 79 DLVHWEHLPIALAPDD-D-YDSHGCYSGSAVVDDGNLSLFYTGNVRDSNGIRQQTQCIAYSEDGGTFEKYSGNPIIDQPE 156 (486)
T ss_pred CcccceECCceecCCC-c-cccCCceeeeEEEeCCcEEEEEccceeccCCcceeEEEEEEEcCCCceEeccCCceecCCC
Confidence 3455543333344433 3 24444 344688888999877664444443 4567999999999883 3 333 233
Q ss_pred CcccCCCeEeeeEEEccCCcEEEEEcccCCCccceEEEEEecCCCCCCcceEEEc
Q 012546 183 QWYDINGVWTGSATILPDGQIVMLYTGSTDKSVQVQNLAYPADPSDPLLLDWVKY 237 (461)
Q Consensus 183 ~~~D~~Gv~SGSavv~~dG~~~~~YTG~~~~~~q~q~lA~S~D~~d~lL~~W~K~ 237 (461)
. + ..-....-++...+|+.+|+=-+...+..-.+.+-.|.| |++|+..
T Consensus 157 ~-~-t~hFRDPKv~w~~~~~~~~mlgAq~~~~~g~i~lY~S~D-----L~~W~~~ 204 (486)
T COG1621 157 G-Y-TPHFRDPKVVWDEGGKWWMMLGAQGEDLKGTILLYESDD-----LKNWQFT 204 (486)
T ss_pred c-c-cccCCCCcccccCCCcEEEEEEEecCCCCceEEEEeCCC-----ccCcEEE
Confidence 2 1 112233343445667766664333332222333444554 4788875
No 91
>PF11807 DUF3328: Domain of unknown function (DUF3328); InterPro: IPR021765 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes.
Probab=29.98 E-value=71 Score=29.52 Aligned_cols=11 Identities=18% Similarity=0.643 Sum_probs=5.3
Q ss_pred CCCCCCCchhh
Q 012546 29 PASHRKPFKGF 39 (461)
Q Consensus 29 ~~~~~~~~~~~ 39 (461)
|.+++++++..
T Consensus 3 p~~r~~~w~~~ 13 (217)
T PF11807_consen 3 PRRRRRRWRRL 13 (217)
T ss_pred CCCCCccHHHH
Confidence 44445555544
No 92
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=27.94 E-value=56 Score=29.00 Aligned_cols=11 Identities=18% Similarity=0.066 Sum_probs=5.8
Q ss_pred CCEEEEEEEeC
Q 012546 140 KGWYHLFYQYN 150 (461)
Q Consensus 140 ~G~YHLFYQ~n 150 (461)
+|.||--+...
T Consensus 81 ~g~~~~~~~~~ 91 (130)
T PF12273_consen 81 QGNFHPNPGPP 91 (130)
T ss_pred CCCCCCCCCCC
Confidence 45666554433
No 93
>PF12111 PNPase_C: Polyribonucleotide phosphorylase C terminal; InterPro: IPR021968 PNPase regulates the expression of small non-coding RNAs that control expression of outer-membrane proteins. The enzyme also affects complex processes, such as the tissue-invasive virulence of Salmonella enterica and the regulation of a virulence-factor secretion system in Yersinia. In Escherichia coli, PNPase is involved in the quality control of ribosomal RNA precursors and is required for growth following cold shock. This family contains the C-terminal protomer domain of the PNPase core. The function of the C-terminal protomer is to catalyse phosphorolysis through its two active sites [].; PDB: 3H1C_S 3GCM_F 3GME_D.
Probab=24.63 E-value=25 Score=25.35 Aligned_cols=12 Identities=33% Similarity=0.847 Sum_probs=0.0
Q ss_pred ccccceeeeecC
Q 012546 115 TWQRTSFHFQPE 126 (461)
Q Consensus 115 ~w~Rp~fHf~P~ 126 (461)
+||||.|.|.-.
T Consensus 7 ~W~rp~y~F~GK 18 (39)
T PF12111_consen 7 EWQRPAYYFYGK 18 (39)
T ss_dssp ------------
T ss_pred cccccccccccc
Confidence 699999999754
Done!