BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012547
(461 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WPQ|A Chain A, Ternary Complex Of Glycerol 3-Phosphate Dehydrogenase 1
With Nad And Dihydroxyactone
pdb|1WPQ|B Chain B, Ternary Complex Of Glycerol 3-Phosphate Dehydrogenase 1
With Nad And Dihydroxyactone
Length = 349
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 123/292 (42%), Gaps = 32/292 (10%)
Query: 151 VTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRI 210
V ++ +A DADI+I +P ++ +++ + K P ISL KGV+ + I
Sbjct: 76 VPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKAN---PTGISLIKGVDEGPNGLKLI 132
Query: 211 ITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHF 269
+++I G+P+ ++ G NIASE+ ++++ I C + L + ++ P+F
Sbjct: 133 ---SEVIGERLGIPMSVLM---GANIASEVADEKFCETTIGCKDPAQGQLLKELMQTPNF 186
Query: 270 TVWDNGDLVTHEVMGGLKNVYAIGAALTNE---SATSKSVYFAHCTSEMVFITHLLAEEP 326
+ ++ T E+ G LKNV A+GA + +K+ EM+ L P
Sbjct: 187 RITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFAKLFCSGP 246
Query: 327 EKLAGPL----LADTYVTLLKGRNAWYGQELAK-GRLTLDLGDSIKGKGMIQGISAVKAF 381
A L +AD T GRN + A+ G+ L + +QG +
Sbjct: 247 VSSATFLESCGVADLITTCYGGRNRKVAEAFARTGKSIEQLEKELLNGQKLQGPETAREL 306
Query: 382 YELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEALRD 433
Y +L L V+ P+ +YK+ P+ + L++
Sbjct: 307 YSILQHKGL-------------VDKFPLFMAVYKVC-YEGQPVGEFIHCLQN 344
>pdb|1X0X|A Chain A, Co-Structure Of Homo Sapiens Glycerol-3-Phosphate
Dehydrogenase 1 Complex With Nad
Length = 354
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 123/292 (42%), Gaps = 32/292 (10%)
Query: 151 VTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRI 210
V ++ +A DADI+I +P ++ +++ + K T ISL KGV+ + I
Sbjct: 81 VPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATG---ISLIKGVDEGPNGLKLI 137
Query: 211 ITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHF 269
+++I G+P+ ++ G NIASE+ ++++ I C + L + ++ P+F
Sbjct: 138 ---SEVIGERLGIPMSVLM---GANIASEVADEKFCETTIGCKDPAQGQLLKELMQTPNF 191
Query: 270 TVWDNGDLVTHEVMGGLKNVYAIGAALTNE---SATSKSVYFAHCTSEMVFITHLLAEEP 326
+ ++ T E+ G LKNV A+GA + +K+ EM+ L P
Sbjct: 192 RITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFAKLFCSGP 251
Query: 327 EKLAGPL----LADTYVTLLKGRNAWYGQELAK-GRLTLDLGDSIKGKGMIQGISAVKAF 381
A L +AD T GRN + A+ G+ L + +QG +
Sbjct: 252 VSSATFLESCGVADLITTCYGGRNRKVAEAFARTGKSIEQLEKELLNGQKLQGPETAREL 311
Query: 382 YELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEALRD 433
Y +L L V+ P+ +YK+ P+ + L++
Sbjct: 312 YSILQHKGL-------------VDKFPLFMAVYKVC-YEGQPVGEFIHCLQN 349
>pdb|2PLA|A Chain A, Crystal Structure Of Human Glycerol-3-Phosphate
Dehydrogenase 1-Like Protein
pdb|2PLA|B Chain B, Crystal Structure Of Human Glycerol-3-Phosphate
Dehydrogenase 1-Like Protein
Length = 349
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 129/295 (43%), Gaps = 40/295 (13%)
Query: 151 VTNLQEAVWDADIVINGLPSTETKEVFEEIS-RYWKERITVPVIISLAKGVEAELEAVPR 209
++NL EAV DAD+++ +P + +EI+ R K+ + I+L KG++ E +
Sbjct: 78 MSNLSEAVQDADLLVFVIPHQFIHRICDEITGRVPKKALG----ITLIKGIDEGPEGLKL 133
Query: 210 IITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPL--AKFLRRP 267
I + +I G+ +I L G NIA+E+ +++ I G++ L + L+ P
Sbjct: 134 I---SDIIREKMGI---DISVLMGANIANEVAAEKFCETTI-GSKVMENGLLFKELLQTP 186
Query: 268 HF--TVWDNGDLVTHEVMGGLKNVYAIGAALTNE---SATSKSVYFAHCTSEMVFITHLL 322
+F TV D+ D V E+ G LKN+ A+GA + +K+ EM+ +
Sbjct: 187 NFRITVVDDADTV--ELCGALKNIVAVGAGFCDGLRCGDNTKAAVIRLGLMEMIAFARIF 244
Query: 323 AEEPEKLAGPL----LADTYVTLLKGRNAWYGQELAK-GRLTLDLGDSIKGKGMIQGISA 377
+ A L +AD T GRN + A+ G+ +L + +QG
Sbjct: 245 CKGQVSTATFLESCGVADLITTCYGGRNRRVAEAFARTGKTIEELEKEMLNGQKLQGPQT 304
Query: 378 VKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEALR 432
Y +L Q L ++ P+ +Y+I P+Q +L L+
Sbjct: 305 SAEVYRILKQKGL-------------LDKFPLFTAVYQIC-YESRPVQEMLSCLQ 345
>pdb|1X0V|A Chain A, Crystal Structure Of Homo Sapien Glycerol-3-Phosphate
Dehydrogenase 1
pdb|1X0V|B Chain B, Crystal Structure Of Homo Sapien Glycerol-3-Phosphate
Dehydrogenase 1
Length = 354
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 119/292 (40%), Gaps = 32/292 (10%)
Query: 151 VTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRI 210
V ++ +A DADI+I +P ++ +++ + K T ISL KGV+ + I
Sbjct: 81 VPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATG---ISLIKGVDEGPNGLKLI 137
Query: 211 ITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHF 269
+++I G+P L G NIASE+ ++++ I C + L + + P+F
Sbjct: 138 ---SEVIGERLGIPXS---VLXGANIASEVADEKFCETTIGCKDPAQGQLLKELXQTPNF 191
Query: 270 TVWDNGDLVTHEVMGGLKNVYAIGAALTNE---SATSKSVYFAHCTSEMVFITHLLAEEP 326
+ ++ T E+ G LKNV A+GA + +K+ E + L P
Sbjct: 192 RITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLXEXIAFAKLFCSGP 251
Query: 327 EKLAGPL----LADTYVTLLKGRNAWYGQELAK-GRLTLDLGDSIKGKGMIQGISAVKAF 381
A L +AD T GRN + A+ G+ L + +QG +
Sbjct: 252 VSSATFLESCGVADLITTCYGGRNRKVAEAFARTGKSIEQLEKELLNGQKLQGPETAREL 311
Query: 382 YELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEALRD 433
Y +L L V+ P+ +YK+ P+ + L++
Sbjct: 312 YSILQHKGL-------------VDKFPLFXAVYKVC-YEGQPVGEFIHCLQN 349
>pdb|1TXG|A Chain A, Structure Of Glycerol-3-Phosphate Dehydrogenase From
Archaeoglobus Fulgidus
pdb|1TXG|B Chain B, Structure Of Glycerol-3-Phosphate Dehydrogenase From
Archaeoglobus Fulgidus
Length = 335
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 105/250 (42%), Gaps = 25/250 (10%)
Query: 153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIIT 212
L++ + +A++V+ G+ + V I Y K++ I+ ++KG+ ++ ++T
Sbjct: 64 QLEKCLENAEVVLLGVSTDGVLPVMSRILPYLKDQ----YIVLISKGL---IDFDNSVLT 116
Query: 213 PTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG-AEKWRKPLAKFLRRPHFTV 271
+ + R E + + GP IA E+ + +E + + +F V
Sbjct: 117 VPEAVWRLKHDLRERTVAITGPAIAREVAKRMPTTVVFSSPSESSANKMKEIFETEYFGV 176
Query: 272 WDNGDLVTHEVMGGLKNVYAIGAALTN--------ESATSKSVYFAHCTSEMVFITHLLA 323
D++ E+ LKNVY+I A E + +K V +EM + +L
Sbjct: 177 EVTTDIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINEMAELIEILG 236
Query: 324 EEPEKLAG-PLLADTYVTLLKGRNAWYGQELAKGRLTLDLGDSI-----KGKGMIQGISA 377
+ E G D T GRN G+ L KG L + +++ +G G+++G
Sbjct: 237 GDRETAFGLSGFGDLIATFRGGRNGMLGELLGKG---LSIDEAMEELERRGVGVVEGYKT 293
Query: 378 VKAFYELLSQ 387
+ Y L S+
Sbjct: 294 AEKAYRLSSK 303
>pdb|4FGW|A Chain A, Structure Of Glycerol-3-phosphate Dehydrogenase, Gpd1,
From Sacharomyces Cerevisiae
pdb|4FGW|B Chain B, Structure Of Glycerol-3-phosphate Dehydrogenase, Gpd1,
From Sacharomyces Cerevisiae
Length = 391
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 83/402 (20%), Positives = 149/402 (37%), Gaps = 82/402 (20%)
Query: 38 KAEGDPLRIVGVGAGAWGSVFTAML-QDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFE 95
KA P ++ +G+G WG+ ++ ++ GY ++++W + E L E
Sbjct: 29 KAAEKPFKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFE----EEINGEKLTE 84
Query: 96 VINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQ 155
+IN+R ++ YL + L D N++ P +L
Sbjct: 85 IINTRHQNVK-------YLPGI-------------TLPD----NLVANP--------DLI 112
Query: 156 EAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQ 215
++V D DI++ +P + ++ + + IS KG E + V + +
Sbjct: 113 DSVKDVDIIVFNIPHQFLPRICSQLKGHVDSHVRA---ISCLKGFEVGAKGVQLL---SS 166
Query: 216 MINRATGVPIENILYLGGPNIASEIYNKEYANARIC----------GAEKWRKPLAKFLR 265
I G+ L G NIA+E+ + ++ + G + K L
Sbjct: 167 YITEELGIQCG---ALSGANIATEVAQEHWSETTVAYHIPKDFRGEGKDVDHKVLKALFH 223
Query: 266 RPHFTVWDNGDLVTHEVMGGLKNVYAIGAAL-------TNESATSKSVYFAHCT--SEMV 316
RP+F V D+ + G LKNV A+G N SA + V +M
Sbjct: 224 RPYFHVSVIEDVAGISICGALKNVVALGCGFVEGLGWGNNASAAIQRVGLGEIIRFGQMF 283
Query: 317 FITHLLAEEPEKLAGPLLADTYVTLLKGRNAWYGQELA-KGRLTLDLGDSIKGKGMIQGI 375
F ++ AG +AD T GRN + +A G+ + + QG+
Sbjct: 284 FPESREETYYQESAG--VADLITTCAGGRNVKVARLMATSGKDAWECEKELLNGQSAQGL 341
Query: 376 SAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKIL 417
K +E L + +VE P+ + +Y+I+
Sbjct: 342 ITCKEVHEWL-------------ETCGSVEDFPLFEAVYQIV 370
>pdb|1Z82|A Chain A, Crystal Structure Of Glycerol-3-Phosphate Dehydrogenase
(Tm0378) From Thermotoga Maritima At 2.00 A Resolution
pdb|1Z82|B Chain B, Crystal Structure Of Glycerol-3-Phosphate Dehydrogenase
(Tm0378) From Thermotoga Maritima At 2.00 A Resolution
Length = 335
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 124/297 (41%), Gaps = 51/297 (17%)
Query: 152 TNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPV----IISLAKGVEAELEAV 207
TN E + DI++ +P +E + +PV +++L+KG+E ++
Sbjct: 72 TNDLEEIKKEDILVIAIPVQYIREHL----------LRLPVKPSXVLNLSKGIE--IKTG 119
Query: 208 PRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRP 267
R+ ++++ G P L GP+ A E+ K + G K L K +
Sbjct: 120 KRV---SEIVEEILGCPY---AVLSGPSHAEEVAKKLPTAVTLAGENS--KELQKRISTE 171
Query: 268 HFTVWDNGDLVTHEVMGGLKNVYAIGAALTNESA---TSKSVYFAHCTSEMVFITHLLAE 324
+F V+ D+V E+ G LKNV AI A + + +K+ E+
Sbjct: 172 YFRVYTCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGXFFGA 231
Query: 325 EPEKLAG-PLLADTYVTLLK--GRNAWYGQELAKGRLTLDLGDSIKGKGMIQGISAVKAF 381
+ + G + D VT RN +G+ +A+G L L +S +++G VKA
Sbjct: 232 DQKTFXGLAGIGDLXVTCNSRYSRNRRFGELIARGFNPLKLLES--SNQVVEGAFTVKAV 289
Query: 382 YELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILE----ALRDE 434
++ ++ + PI + +Y+++ + P+Q+ + +L+DE
Sbjct: 290 XKIAKENKIDX---------------PISEEVYRVVYEGKPPLQSXRDLXRRSLKDE 331
>pdb|1EVY|A Chain A, Crystal Structure Of Leishmania Mexicana
Glycerol-3-phosphate Dehydrogenase
pdb|1EVZ|A Chain A, Crystal Structure Of Leishmania Mexicana
Glycerol-3-Phosphate Dehydrogenase In Complex With Nad
pdb|1JDJ|A Chain A, Crystal Structure Of Leishmania Mexicana
Glycerol-3-Phosphate Dehydrogenase In Complex With
2-Fluoro-6-Chloropurine
pdb|1M66|A Chain A, Crystal Structure Of Leishmania Mexicana Gpdh Complexed
With Inhibitor 2-Bromo-6-Chloro-Purine
pdb|1M67|A Chain A, Crystal Structure Of Leishmania Mexicana Gpdh Complexed
With Inhibitor 2-Bromo-6-Hydroxy-Purine
pdb|1N1E|A Chain A, Crystal Structure Of Leishmania Mexicana Glycerol-3-
Phosphate Dehydrogenase Complexed With Dhap And Nad
pdb|1N1E|B Chain B, Crystal Structure Of Leishmania Mexicana Glycerol-3-
Phosphate Dehydrogenase Complexed With Dhap And Nad
pdb|1N1G|A Chain A, Crystal Structure Of Leishmania Mexicana
Glycerol-3-Phosphate Dehydrogenase With Inhibitor Bcp
Length = 366
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 76/156 (48%), Gaps = 20/156 (12%)
Query: 152 TNLQEAVWDADIVINGLPSTETKEVFEE----ISRYWKERITVPVIISLAKGVEAELEAV 207
+++++A A+I++ +P+ + FE+ + Y KE+ VPV++ KG+E
Sbjct: 77 SDVEKAYNGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEK-QVPVLVC-TKGIERS---- 130
Query: 208 PRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEY-----ANARICGAEKWRKPLAK 262
+ P ++I P+ ++L GP+ A E+ + A+A I A + ++ ++
Sbjct: 131 -TLKFPAEIIGEFLPSPLLSVL--AGPSFAIEVATGVFTCVSIASADINVARRLQRIMST 187
Query: 263 FLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAALTN 298
R F W D V EV +KNV AIG+ + N
Sbjct: 188 GDR--SFVCWATTDTVGCEVASAVKNVLAIGSGVAN 221
>pdb|3K96|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella
Burnetii
pdb|3K96|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella
Burnetii
Length = 356
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 89/209 (42%), Gaps = 26/209 (12%)
Query: 231 LGGPNIASEIY-NKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNV 289
+ GP++A+E+ N A + ++ K L + L F V+ N D++ E+ G +KN+
Sbjct: 159 ISGPSLATEVAANLPTAVSLASNNSQFSKDLIERLHGQRFRVYKNDDMIGVELCGSVKNI 218
Query: 290 YAIGAALTNE---SATSKSVYFAHCTSEMVFITHLLAEEPEKLAG-PLLADTYVTLL--K 343
AI +++ + +++ +EM + + + E L G L D +T +
Sbjct: 219 LAIATGISDGLKLGSNARAALITRGLTEMGRLVSVFGGKQETLTGLAGLGDLVLTCTDNQ 278
Query: 344 GRNAWYGQELAKGRLTLDLGDSIKGKGMIQGI-SAVKAFYELLSQSSLSVLHPEENKPVA 402
RN +G L LG+ + K Q I A++ Y +L+ H E
Sbjct: 279 SRNRRFG---------LALGEGVDKKEAQQAIGQAIEGLYNTDQVHALAQKHAIE----- 324
Query: 403 TVELCPILKMLYKILIMRESPIQAILEAL 431
P+ +++IL P QA+ E L
Sbjct: 325 ----MPLTFQVHRILHEDLDPQQAVQELL 349
>pdb|2GUW|A Chain A, Crystal Structure Of Amp Nucleosidase From Salmonella
Typhimurium Lt2
pdb|2GUW|B Chain B, Crystal Structure Of Amp Nucleosidase From Salmonella
Typhimurium Lt2
pdb|2GUW|C Chain C, Crystal Structure Of Amp Nucleosidase From Salmonella
Typhimurium Lt2
Length = 484
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 107 LIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVIN 166
+I C L+ +A +GD L A L+D L+ + P P+ + +Q A++DA ++
Sbjct: 302 MIGHCGGLRESQA-IGDYVL-AHAYLRDDHVLDAVLPPDIPIPSIAEVQRALYDATKAVS 359
Query: 167 GLPSTETKE------VFEEISRYWKERITVPVI-ISLAKGVEAELEAV 207
G+P E K+ V R W+ R + + +L++ V ++E+
Sbjct: 360 GMPGEEVKQRLRTGTVVTTDDRNWELRYSASALRFNLSRAVAIDMESA 407
>pdb|1T8R|A Chain A, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8R|B Chain B, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8R|C Chain C, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8R|D Chain D, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8R|E Chain E, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8R|F Chain F, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8S|A Chain A, Crystal Structure Of E.Coli Amp Nucleosidase Complexed
With Formicin 5'-Monophosphate
pdb|1T8S|B Chain B, Crystal Structure Of E.Coli Amp Nucleosidase Complexed
With Formicin 5'-Monophosphate
pdb|1T8S|C Chain C, Crystal Structure Of E.Coli Amp Nucleosidase Complexed
With Formicin 5'-Monophosphate
pdb|1T8S|D Chain D, Crystal Structure Of E.Coli Amp Nucleosidase Complexed
With Formicin 5'-Monophosphate
pdb|1T8S|E Chain E, Crystal Structure Of E.Coli Amp Nucleosidase Complexed
With Formicin 5'-Monophosphate
pdb|1T8S|F Chain F, Crystal Structure Of E.Coli Amp Nucleosidase Complexed
With Formicin 5'-Monophosphate
pdb|1T8W|A Chain A, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8W|B Chain B, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8W|C Chain C, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8W|D Chain D, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8W|E Chain E, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8W|F Chain F, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8Y|A Chain A, Crystal Structure Of E.coli Amp Nucleosidase Complexed
With Phosphate
pdb|1T8Y|B Chain B, Crystal Structure Of E.coli Amp Nucleosidase Complexed
With Phosphate
pdb|1T8Y|C Chain C, Crystal Structure Of E.coli Amp Nucleosidase Complexed
With Phosphate
pdb|1T8Y|D Chain D, Crystal Structure Of E.coli Amp Nucleosidase Complexed
With Phosphate
pdb|1T8Y|E Chain E, Crystal Structure Of E.coli Amp Nucleosidase Complexed
With Phosphate
pdb|1T8Y|F Chain F, Crystal Structure Of E.coli Amp Nucleosidase Complexed
With Phosphate
Length = 484
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 9/107 (8%)
Query: 108 IRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVING 167
I C L+ +A +GD L A L+D L+ + P P+ + +Q A++DA +++G
Sbjct: 303 IGHCGGLRESQA-IGDYVL-AHAYLRDDHVLDAVLPPDIPIPSIAEVQRALYDATKLVSG 360
Query: 168 LPSTETKE------VFEEISRYWKERITVPVI-ISLAKGVEAELEAV 207
P E K+ V R W+ R + + +L++ V + E+
Sbjct: 361 RPGEEVKQRLRTGTVVTTDDRNWELRYSASALRFNLSRAVAIDXESA 407
>pdb|4EGL|A Chain A, Crystal Structure Of Two Tandem Rna Recognition Motifs Of
Human Antigen R
Length = 177
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 156 EAVWDADIVINGLPSTETK----EVFEEISRYWKERITVPVIISLAKGV 200
E + DA++ I+GLP T T+ ++F R R+ V L++GV
Sbjct: 84 EVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGV 132
>pdb|4ED5|A Chain A, Crystal Structure Of The Two N-Terminal Rrm Domains Of Hur
Complexed With Rna
pdb|4ED5|B Chain B, Crystal Structure Of The Two N-Terminal Rrm Domains Of Hur
Complexed With Rna
Length = 177
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 156 EAVWDADIVINGLPSTETK----EVFEEISRYWKERITVPVIISLAKGV 200
E + DA++ I+GLP T T+ ++F R R+ V L++GV
Sbjct: 84 EVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGV 132
>pdb|2FFH|A Chain A, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|B Chain B, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|C Chain C, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
Length = 425
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 49/117 (41%), Gaps = 8/117 (6%)
Query: 272 WDNGDLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAG 331
+D VT V+ L GAAL+ T K +YFA + + + PE+LAG
Sbjct: 233 FDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFY---PERLAG 289
Query: 332 PLLADTYVTLL--KGRNAWYGQELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLS 386
+L V L K R A E K L L D +K +Q + + F E+L
Sbjct: 290 RILGMGDVASLAEKVRAAGLEAEAPKSAKELSLEDFLK---QMQNLKRLGPFSEILG 343
>pdb|1FXL|A Chain A, Crystal Structure Of Hud And Au-Rich Element Of The C-Fos
Rna
pdb|1G2E|A Chain A, Crystal Structure Of Hud And Au-Rich Element Of The Tumor
Necrosis Factor Alpha Rna
Length = 167
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 157 AVWDADIVINGLPST----ETKEVFEEISRYWKERITVPVIISLAKGV 200
++ DA++ ++GLP T E +++F + R RI V + +++GV
Sbjct: 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGV 132
>pdb|1FNX|H Chain H, Solution Structure Of The Huc Rbd1-Rbd2 Complexed With The
Au-Rich Element
Length = 174
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 27/44 (61%)
Query: 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200
++ DA++ ++GLP T +++ E++ + IT +++ A GV
Sbjct: 87 SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGV 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,161,820
Number of Sequences: 62578
Number of extensions: 523682
Number of successful extensions: 1254
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1238
Number of HSP's gapped (non-prelim): 27
length of query: 461
length of database: 14,973,337
effective HSP length: 102
effective length of query: 359
effective length of database: 8,590,381
effective search space: 3083946779
effective search space used: 3083946779
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)