Query 012547
Match_columns 461
No_of_seqs 274 out of 2466
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 03:47:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012547.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012547hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0240 GpsA Glycerol-3-phosph 100.0 4.4E-70 9.6E-75 544.1 33.4 322 43-438 1-329 (329)
2 PTZ00345 glycerol-3-phosphate 100.0 1.2E-65 2.5E-70 526.6 34.8 346 33-437 1-360 (365)
3 TIGR03376 glycerol3P_DH glycer 100.0 1.1E-62 2.3E-67 501.5 33.4 326 45-429 1-341 (342)
4 KOG2711 Glycerol-3-phosphate d 100.0 1.2E-59 2.5E-64 464.2 31.0 360 25-439 3-372 (372)
5 PRK12439 NAD(P)H-dependent gly 100.0 2E-58 4.3E-63 471.5 36.8 323 42-439 6-336 (341)
6 PRK14620 NAD(P)H-dependent gly 100.0 1.9E-49 4.2E-54 402.2 34.8 314 44-432 1-326 (326)
7 PRK14619 NAD(P)H-dependent gly 100.0 4.3E-44 9.3E-49 360.9 33.9 297 42-439 3-307 (308)
8 PRK14618 NAD(P)H-dependent gly 100.0 2E-43 4.4E-48 358.6 34.0 319 42-438 3-328 (328)
9 PRK00094 gpsA NAD(P)H-dependen 100.0 5.8E-39 1.3E-43 323.8 35.5 318 43-433 1-325 (325)
10 PF07479 NAD_Gly3P_dh_C: NAD-d 100.0 1.3E-32 2.7E-37 249.5 14.2 141 275-430 1-149 (149)
11 PF01210 NAD_Gly3P_dh_N: NAD-d 99.9 2.1E-26 4.6E-31 210.6 15.3 154 45-255 1-155 (157)
12 PRK06522 2-dehydropantoate 2-r 99.9 7.6E-24 1.6E-28 211.6 22.5 282 44-419 1-296 (304)
13 PRK12921 2-dehydropantoate 2-r 99.9 4.3E-22 9.3E-27 199.4 23.0 282 44-419 1-299 (305)
14 PRK06249 2-dehydropantoate 2-r 99.9 5.7E-22 1.2E-26 200.4 23.7 283 42-419 4-307 (313)
15 PRK08229 2-dehydropantoate 2-r 99.9 5.7E-22 1.2E-26 202.0 23.3 294 43-419 2-315 (341)
16 COG1893 ApbA Ketopantoate redu 99.9 5.5E-21 1.2E-25 192.9 21.6 278 44-419 1-298 (307)
17 PRK05708 2-dehydropantoate 2-r 99.9 2.7E-21 5.7E-26 195.1 18.3 276 43-419 2-295 (305)
18 TIGR00745 apbA_panE 2-dehydrop 99.8 1E-19 2.3E-24 180.7 20.3 272 53-419 1-289 (293)
19 TIGR03026 NDP-sugDHase nucleot 99.8 7.3E-18 1.6E-22 176.7 22.7 224 44-331 1-241 (411)
20 PRK12491 pyrroline-5-carboxyla 99.8 1.4E-17 3.1E-22 165.5 22.3 198 43-329 2-200 (272)
21 PRK07634 pyrroline-5-carboxyla 99.8 9.8E-17 2.1E-21 156.0 22.2 198 43-330 4-203 (245)
22 COG0345 ProC Pyrroline-5-carbo 99.7 5.2E-16 1.1E-20 153.0 22.2 197 43-330 1-198 (266)
23 COG1004 Ugd Predicted UDP-gluc 99.7 1.3E-15 2.7E-20 155.5 21.8 220 44-331 1-239 (414)
24 PRK06928 pyrroline-5-carboxyla 99.7 1.1E-15 2.4E-20 152.3 20.4 198 43-329 1-201 (277)
25 PTZ00431 pyrroline carboxylate 99.7 2.3E-15 5E-20 148.6 21.0 190 44-330 4-194 (260)
26 COG2084 MmsB 3-hydroxyisobutyr 99.7 4.2E-15 9E-20 147.9 17.7 199 44-331 1-204 (286)
27 PRK07679 pyrroline-5-carboxyla 99.6 3.5E-14 7.7E-19 141.4 23.9 199 43-331 3-204 (279)
28 PRK07680 late competence prote 99.6 2.8E-14 6E-19 141.7 22.6 161 44-279 1-163 (273)
29 PLN02688 pyrroline-5-carboxyla 99.6 5.3E-14 1.2E-18 138.7 23.7 197 44-331 1-199 (266)
30 PRK11880 pyrroline-5-carboxyla 99.6 8.6E-14 1.9E-18 137.3 22.4 194 43-329 2-198 (267)
31 PRK11559 garR tartronate semia 99.6 1.6E-13 3.5E-18 137.4 22.2 255 43-417 2-266 (296)
32 PRK15461 NADH-dependent gamma- 99.6 1.5E-13 3.2E-18 138.2 19.7 199 44-331 2-204 (296)
33 TIGR01505 tartro_sem_red 2-hyd 99.5 3E-13 6.6E-18 135.3 19.5 196 45-331 1-202 (291)
34 TIGR01692 HIBADH 3-hydroxyisob 99.5 2.4E-13 5.1E-18 136.1 18.1 261 48-418 1-268 (288)
35 PRK12490 6-phosphogluconate de 99.5 2.6E-12 5.7E-17 129.3 23.7 198 44-331 1-207 (299)
36 PRK15182 Vi polysaccharide bio 99.5 1.9E-12 4.1E-17 136.5 23.5 283 40-431 3-302 (425)
37 TIGR01915 npdG NADPH-dependent 99.5 4.9E-13 1.1E-17 128.7 17.5 176 44-275 1-188 (219)
38 PRK15057 UDP-glucose 6-dehydro 99.5 1.4E-12 3.1E-17 135.8 21.5 212 44-331 1-230 (388)
39 PRK11064 wecC UDP-N-acetyl-D-m 99.5 1.4E-12 2.9E-17 137.2 21.1 218 43-329 3-243 (415)
40 TIGR00872 gnd_rel 6-phosphoglu 99.5 1.3E-11 2.8E-16 124.3 26.5 201 44-331 1-206 (298)
41 PRK15059 tartronate semialdehy 99.5 1.5E-12 3.2E-17 130.9 19.0 255 44-417 1-263 (292)
42 PRK09599 6-phosphogluconate de 99.5 1.2E-11 2.7E-16 124.5 25.3 198 44-331 1-208 (301)
43 PLN02353 probable UDP-glucose 99.5 4E-12 8.6E-17 135.5 21.5 222 43-329 1-247 (473)
44 PRK06476 pyrroline-5-carboxyla 99.4 3.9E-12 8.5E-17 125.2 18.4 190 44-330 1-190 (258)
45 PF03807 F420_oxidored: NADP o 99.4 8.3E-13 1.8E-17 110.1 10.6 94 45-199 1-96 (96)
46 PRK06130 3-hydroxybutyryl-CoA 99.4 7E-12 1.5E-16 126.6 18.8 205 42-329 3-212 (311)
47 PF03446 NAD_binding_2: NAD bi 99.4 6.2E-13 1.3E-17 122.3 10.1 152 43-272 1-158 (163)
48 PLN02350 phosphogluconate dehy 99.4 1.5E-11 3.2E-16 131.5 20.3 210 38-331 1-222 (493)
49 PRK12557 H(2)-dependent methyl 99.4 9.7E-11 2.1E-15 120.2 24.0 205 44-331 1-234 (342)
50 PRK07531 bifunctional 3-hydrox 99.4 2.4E-11 5.3E-16 130.5 19.8 172 43-275 4-180 (495)
51 PF03721 UDPG_MGDP_dh_N: UDP-g 99.4 7.1E-12 1.5E-16 118.0 12.8 169 44-263 1-185 (185)
52 PLN02858 fructose-bisphosphate 99.4 3.3E-11 7.2E-16 142.3 21.2 278 38-433 319-613 (1378)
53 TIGR00465 ilvC ketol-acid redu 99.3 1.6E-11 3.5E-16 124.6 15.5 158 43-280 3-181 (314)
54 PRK06035 3-hydroxyacyl-CoA deh 99.3 2.3E-11 5E-16 121.9 16.5 192 44-289 4-199 (291)
55 PTZ00142 6-phosphogluconate de 99.3 2.7E-11 5.8E-16 129.1 17.9 202 44-330 2-215 (470)
56 PLN02858 fructose-bisphosphate 99.3 2.8E-11 6.1E-16 143.0 19.5 290 44-456 5-312 (1378)
57 TIGR00112 proC pyrroline-5-car 99.3 4.9E-11 1.1E-15 116.9 17.9 148 148-329 31-180 (245)
58 COG0677 WecC UDP-N-acetyl-D-ma 99.3 7.4E-11 1.6E-15 120.5 19.6 220 39-326 5-243 (436)
59 PRK05479 ketol-acid reductoiso 99.3 2E-10 4.3E-15 117.0 22.4 158 44-280 18-195 (330)
60 PRK08293 3-hydroxybutyryl-CoA 99.3 1.2E-10 2.5E-15 116.6 20.1 183 43-280 3-190 (287)
61 PRK05808 3-hydroxybutyryl-CoA 99.3 6.7E-11 1.5E-15 117.9 17.9 177 44-280 4-187 (282)
62 PRK06129 3-hydroxyacyl-CoA deh 99.3 1.3E-10 2.9E-15 117.4 19.6 206 43-329 2-215 (308)
63 PRK09260 3-hydroxybutyryl-CoA 99.2 4.4E-10 9.6E-15 112.5 18.7 178 44-280 2-186 (288)
64 PF02558 ApbA: Ketopantoate re 99.2 1.5E-11 3.3E-16 110.7 7.2 116 46-223 1-116 (151)
65 PRK07530 3-hydroxybutyryl-CoA 99.2 4.2E-10 9.1E-15 112.8 18.1 177 43-278 4-186 (292)
66 PF02737 3HCDH_N: 3-hydroxyacy 99.2 2.4E-10 5.1E-15 107.1 13.6 173 45-276 1-179 (180)
67 PRK07066 3-hydroxybutyryl-CoA 99.2 1.6E-09 3.5E-14 110.3 20.1 176 43-280 7-189 (321)
68 KOG0409 Predicted dehydrogenas 99.2 2.6E-09 5.6E-14 105.8 20.3 200 43-331 35-239 (327)
69 PLN02545 3-hydroxybutyryl-CoA 99.2 1.8E-09 3.9E-14 108.4 19.4 180 43-279 4-187 (295)
70 COG2085 Predicted dinucleotide 99.1 8.6E-10 1.9E-14 104.8 14.8 165 43-272 1-176 (211)
71 TIGR00873 gnd 6-phosphoglucona 99.1 9.5E-10 2.1E-14 117.2 16.4 200 45-330 1-212 (467)
72 PRK07417 arogenate dehydrogena 99.1 5.1E-10 1.1E-14 111.6 13.2 158 44-275 1-166 (279)
73 PRK08655 prephenate dehydrogen 99.1 9.9E-10 2.1E-14 116.4 15.8 156 44-275 1-162 (437)
74 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.1 2.4E-09 5.2E-14 115.3 17.1 179 42-280 4-189 (503)
75 PRK08507 prephenate dehydrogen 99.1 1.9E-09 4.2E-14 107.1 15.2 161 44-277 1-169 (275)
76 PRK07502 cyclohexadienyl dehyd 99.1 3E-09 6.6E-14 107.4 16.1 166 39-275 2-178 (307)
77 PRK07819 3-hydroxybutyryl-CoA 99.1 8E-09 1.7E-13 103.6 18.2 179 43-280 5-191 (286)
78 PRK08268 3-hydroxy-acyl-CoA de 99.0 1.1E-08 2.3E-13 110.4 18.4 178 42-279 6-190 (507)
79 PLN02256 arogenate dehydrogena 99.0 6.1E-09 1.3E-13 105.4 14.9 170 24-275 22-203 (304)
80 COG1250 FadB 3-hydroxyacyl-CoA 99.0 7.8E-09 1.7E-13 104.2 14.8 181 43-280 3-187 (307)
81 PRK06545 prephenate dehydrogen 99.0 9.5E-09 2.1E-13 106.3 14.9 160 44-274 1-172 (359)
82 PRK11730 fadB multifunctional 99.0 1.7E-08 3.6E-13 113.2 17.3 180 44-282 314-499 (715)
83 KOG2666 UDP-glucose/GDP-mannos 98.9 3.4E-08 7.4E-13 98.2 16.9 194 43-289 1-221 (481)
84 TIGR02440 FadJ fatty oxidation 98.9 4.5E-08 9.8E-13 109.5 18.6 183 43-282 304-491 (699)
85 PRK11154 fadJ multifunctional 98.9 3.9E-08 8.5E-13 110.1 17.7 181 43-280 309-494 (708)
86 TIGR02437 FadB fatty oxidation 98.9 4.9E-08 1.1E-12 109.4 17.3 181 43-280 313-497 (714)
87 TIGR02441 fa_ox_alpha_mit fatt 98.8 5.4E-08 1.2E-12 109.3 15.6 181 43-280 335-519 (737)
88 PF10727 Rossmann-like: Rossma 98.8 2.9E-09 6.2E-14 94.4 4.2 93 42-197 9-104 (127)
89 PRK11199 tyrA bifunctional cho 98.8 7E-08 1.5E-12 100.4 13.9 143 42-275 97-241 (374)
90 PRK14806 bifunctional cyclohex 98.7 1.3E-07 2.8E-12 106.4 14.4 157 44-274 4-175 (735)
91 KOG3124 Pyrroline-5-carboxylat 98.7 7.2E-08 1.6E-12 93.8 10.2 163 44-279 1-164 (267)
92 COG0287 TyrA Prephenate dehydr 98.7 2.2E-07 4.8E-12 92.9 13.6 162 43-275 3-170 (279)
93 PLN02712 arogenate dehydrogena 98.7 2.7E-07 5.8E-12 102.6 14.3 160 39-275 365-536 (667)
94 PLN02712 arogenate dehydrogena 98.6 5.4E-07 1.2E-11 100.2 15.6 159 40-275 49-219 (667)
95 TIGR01724 hmd_rel H2-forming N 98.6 1E-06 2.3E-11 88.8 15.1 168 44-279 1-198 (341)
96 PRK09287 6-phosphogluconate de 98.5 1.3E-06 2.8E-11 93.2 14.4 191 54-330 1-204 (459)
97 PRK13403 ketol-acid reductoiso 98.5 6.1E-06 1.3E-10 83.8 17.6 199 44-322 17-237 (335)
98 PRK08818 prephenate dehydrogen 98.5 1.7E-06 3.6E-11 89.9 13.7 144 43-275 4-154 (370)
99 PRK06223 malate dehydrogenase; 98.4 2.5E-06 5.4E-11 86.1 13.1 106 43-202 2-124 (307)
100 PRK12480 D-lactate dehydrogena 98.4 9.5E-07 2.1E-11 90.5 9.7 94 42-203 145-240 (330)
101 TIGR01763 MalateDH_bact malate 98.4 3.3E-06 7.2E-11 85.6 12.3 121 44-228 2-139 (305)
102 PTZ00082 L-lactate dehydrogena 98.3 4.8E-06 1E-10 85.0 12.1 110 39-201 2-132 (321)
103 PRK08269 3-hydroxybutyryl-CoA 98.3 1.5E-05 3.2E-10 81.2 15.5 142 147-329 64-211 (314)
104 PF00056 Ldh_1_N: lactate/mala 98.3 9.4E-06 2E-10 73.1 11.3 121 44-227 1-138 (141)
105 PF07991 IlvN: Acetohydroxy ac 98.3 7.3E-06 1.6E-10 75.2 10.4 94 43-202 4-99 (165)
106 cd05297 GH4_alpha_glucosidase_ 98.2 4.9E-06 1.1E-10 88.1 10.1 80 44-172 1-86 (423)
107 PTZ00117 malate dehydrogenase; 98.2 1.4E-05 3E-10 81.5 12.6 107 42-201 4-126 (319)
108 KOG2304 3-hydroxyacyl-CoA dehy 98.2 3.7E-07 8E-12 87.3 1.0 127 41-202 9-137 (298)
109 PRK08605 D-lactate dehydrogena 98.2 5.7E-06 1.2E-10 84.8 9.6 96 42-203 145-242 (332)
110 PRK02318 mannitol-1-phosphate 98.2 1.9E-06 4.1E-11 90.0 5.8 117 44-203 1-128 (381)
111 cd00650 LDH_MDH_like NAD-depen 98.0 9.1E-05 2E-09 73.3 12.8 123 46-228 1-140 (263)
112 cd01339 LDH-like_MDH L-lactate 98.0 5E-05 1.1E-09 76.6 10.9 119 46-228 1-136 (300)
113 PLN02602 lactate dehydrogenase 97.9 0.00017 3.7E-09 74.5 13.9 64 18-86 8-76 (350)
114 PRK13304 L-aspartate dehydroge 97.9 7E-05 1.5E-09 74.4 10.4 82 43-182 1-83 (265)
115 cd05291 HicDH_like L-2-hydroxy 97.9 0.00012 2.6E-09 74.2 11.8 40 44-87 1-40 (306)
116 cd05292 LDH_2 A subgroup of L- 97.9 0.00014 3E-09 73.9 12.0 39 44-86 1-39 (308)
117 PF01113 DapB_N: Dihydrodipico 97.8 0.00011 2.4E-09 64.6 9.3 122 44-236 1-124 (124)
118 COG4007 Predicted dehydrogenas 97.8 0.00069 1.5E-08 66.4 15.2 169 43-279 1-199 (340)
119 COG1023 Gnd Predicted 6-phosph 97.8 0.00014 3.1E-09 70.5 10.3 142 44-266 1-151 (300)
120 PRK13302 putative L-aspartate 97.8 0.00015 3.3E-09 72.3 10.8 81 43-181 6-88 (271)
121 COG0059 IlvC Ketol-acid reduct 97.8 0.0018 4E-08 64.9 17.4 94 44-203 19-114 (338)
122 PRK15076 alpha-galactosidase; 97.7 0.00021 4.5E-09 75.9 11.5 82 43-169 1-84 (431)
123 PRK07574 formate dehydrogenase 97.7 0.00016 3.5E-09 75.6 10.1 97 43-203 192-290 (385)
124 PF01408 GFO_IDH_MocA: Oxidore 97.7 0.00029 6.4E-09 60.5 10.1 95 44-203 1-98 (120)
125 PRK06444 prephenate dehydrogen 97.7 7.3E-05 1.6E-09 71.2 6.7 23 44-67 1-24 (197)
126 PRK00066 ldh L-lactate dehydro 97.7 0.00037 8E-09 71.1 12.1 43 41-87 4-46 (315)
127 cd05293 LDH_1 A subgroup of L- 97.7 0.00041 8.9E-09 70.7 12.3 106 43-201 3-124 (312)
128 PRK13243 glyoxylate reductase; 97.7 0.00014 3.1E-09 74.6 9.0 96 42-203 149-246 (333)
129 cd05213 NAD_bind_Glutamyl_tRNA 97.7 0.00029 6.3E-09 71.6 11.1 109 29-198 166-274 (311)
130 PRK15469 ghrA bifunctional gly 97.7 0.00035 7.6E-09 71.2 11.4 95 43-203 136-232 (312)
131 PF08546 ApbA_C: Ketopantoate 97.7 0.00053 1.1E-08 59.9 10.8 113 276-419 1-123 (125)
132 PLN03139 formate dehydrogenase 97.6 0.00025 5.4E-09 74.2 9.9 98 42-203 198-297 (386)
133 cd00300 LDH_like L-lactate deh 97.6 0.00035 7.6E-09 70.7 10.4 38 46-87 1-38 (300)
134 cd01065 NAD_bind_Shikimate_DH 97.6 0.00021 4.5E-09 64.3 7.7 41 42-87 18-58 (155)
135 cd05294 LDH-like_MDH_nadp A la 97.6 0.00046 1E-08 70.1 10.9 35 44-82 1-36 (309)
136 PF02826 2-Hacid_dh_C: D-isome 97.6 0.00024 5.2E-09 66.3 7.9 99 40-203 33-133 (178)
137 PF02153 PDH: Prephenate dehyd 97.6 0.0014 3E-08 64.8 13.7 106 155-274 40-156 (258)
138 PF01488 Shikimate_DH: Shikima 97.6 0.00023 5E-09 63.5 7.2 41 42-87 11-51 (135)
139 KOG2380 Prephenate dehydrogena 97.5 0.0011 2.4E-08 67.2 12.7 153 44-270 53-214 (480)
140 COG0362 Gnd 6-phosphogluconate 97.5 0.00035 7.5E-09 72.2 9.3 105 43-203 3-108 (473)
141 PRK05442 malate dehydrogenase; 97.5 0.00081 1.7E-08 68.9 11.9 41 41-82 2-45 (326)
142 TIGR01759 MalateDH-SF1 malate 97.5 0.00095 2.1E-08 68.3 12.1 40 42-82 2-44 (323)
143 PRK05225 ketol-acid reductoiso 97.5 0.003 6.5E-08 67.0 15.7 100 44-203 37-136 (487)
144 TIGR02853 spore_dpaA dipicolin 97.5 0.00037 8E-09 70.2 8.0 38 42-85 150-187 (287)
145 PRK06141 ornithine cyclodeamin 97.4 0.00043 9.3E-09 70.5 8.4 77 42-171 124-200 (314)
146 cd05290 LDH_3 A subgroup of L- 97.4 0.0016 3.6E-08 66.1 12.5 38 45-86 1-38 (307)
147 cd01337 MDH_glyoxysomal_mitoch 97.4 0.0014 3.1E-08 66.7 11.7 34 44-81 1-35 (310)
148 COG0039 Mdh Malate/lactate deh 97.4 0.0013 2.8E-08 66.8 11.2 39 44-86 1-39 (313)
149 PF10100 DUF2338: Uncharacteri 97.4 0.0099 2.2E-07 61.9 17.6 235 44-326 2-273 (429)
150 PRK06436 glycerate dehydrogena 97.4 0.00055 1.2E-08 69.4 8.3 93 42-203 121-215 (303)
151 cd01338 MDH_choloroplast_like 97.4 0.0013 2.8E-08 67.4 10.8 41 42-83 1-44 (322)
152 TIGR01327 PGDH D-3-phosphoglyc 97.3 0.00068 1.5E-08 73.8 8.6 95 44-203 139-235 (525)
153 PRK13581 D-3-phosphoglycerate 97.3 0.00072 1.6E-08 73.7 8.8 95 43-203 140-236 (526)
154 KOG2305 3-hydroxyacyl-CoA dehy 97.3 0.00036 7.7E-09 67.3 5.6 117 44-202 4-125 (313)
155 TIGR01757 Malate-DH_plant mala 97.3 0.0027 5.9E-08 66.5 12.6 44 42-86 43-91 (387)
156 TIGR01772 MDH_euk_gproteo mala 97.3 0.0019 4.2E-08 65.8 11.0 121 45-228 1-141 (312)
157 TIGR00036 dapB dihydrodipicoli 97.3 0.0036 7.8E-08 62.3 12.4 75 147-238 55-129 (266)
158 cd00704 MDH Malate dehydrogena 97.2 0.0026 5.7E-08 65.1 11.5 37 45-82 2-41 (323)
159 PRK00257 erythronate-4-phospha 97.2 0.00075 1.6E-08 70.6 7.5 93 42-203 115-213 (381)
160 PF01118 Semialdhyde_dh: Semia 97.2 0.0027 5.8E-08 55.4 9.8 41 153-200 60-100 (121)
161 PLN00203 glutamyl-tRNA reducta 97.2 0.00095 2.1E-08 72.5 8.2 54 29-87 252-305 (519)
162 PRK05086 malate dehydrogenase; 97.2 0.0029 6.2E-08 64.5 11.2 37 44-83 1-38 (312)
163 PRK11790 D-3-phosphoglycerate 97.2 0.0013 2.8E-08 69.5 8.8 94 42-203 150-245 (409)
164 PRK00048 dihydrodipicolinate r 97.2 0.0021 4.6E-08 63.6 9.7 95 43-203 1-97 (257)
165 PRK08618 ornithine cyclodeamin 97.2 0.0015 3.3E-08 66.8 8.8 94 42-195 126-219 (325)
166 COG1748 LYS9 Saccharopine dehy 97.2 0.0012 2.5E-08 69.0 8.0 88 43-180 1-88 (389)
167 COG2344 AT-rich DNA-binding pr 97.2 0.0019 4.1E-08 60.7 8.5 98 24-182 67-168 (211)
168 PRK15438 erythronate-4-phospha 97.2 0.00099 2.1E-08 69.6 7.5 93 42-203 115-213 (378)
169 PLN00106 malate dehydrogenase 97.2 0.0059 1.3E-07 62.6 13.0 47 32-82 7-54 (323)
170 PRK08306 dipicolinate synthase 97.1 0.0019 4.1E-08 65.3 9.1 37 42-84 151-187 (296)
171 TIGR02371 ala_DH_arch alanine 97.1 0.0016 3.5E-08 66.7 8.6 77 42-171 127-203 (325)
172 COG0111 SerA Phosphoglycerate 97.1 0.0016 3.6E-08 66.6 8.3 97 42-203 141-239 (324)
173 PRK08291 ectoine utilization p 97.1 0.0018 3.8E-08 66.5 8.4 78 42-171 131-208 (330)
174 PLN02928 oxidoreductase family 97.1 0.0015 3.2E-08 67.6 7.9 108 43-203 159-268 (347)
175 PRK12549 shikimate 5-dehydroge 97.1 0.0035 7.5E-08 63.0 10.4 67 14-87 100-166 (284)
176 PLN00112 malate dehydrogenase 97.1 0.0086 1.9E-07 63.8 13.4 45 42-87 99-148 (444)
177 PRK09496 trkA potassium transp 97.0 0.0023 4.9E-08 67.8 9.1 38 44-87 1-38 (453)
178 cd01336 MDH_cytoplasmic_cytoso 97.0 0.0049 1.1E-07 63.2 11.2 39 43-82 2-43 (325)
179 PRK08410 2-hydroxyacid dehydro 97.0 0.0021 4.6E-08 65.4 8.4 93 42-203 144-238 (311)
180 PRK14194 bifunctional 5,10-met 97.0 0.0018 4E-08 65.5 7.5 34 42-81 158-192 (301)
181 TIGR01758 MDH_euk_cyt malate d 97.0 0.0069 1.5E-07 62.1 11.9 38 45-83 1-41 (324)
182 PRK13303 L-aspartate dehydroge 97.0 0.0049 1.1E-07 61.3 10.4 46 148-199 49-94 (265)
183 COG0569 TrkA K+ transport syst 97.0 0.0027 5.9E-08 61.6 8.3 88 44-183 1-89 (225)
184 cd01075 NAD_bind_Leu_Phe_Val_D 97.0 0.0048 1E-07 58.8 9.8 41 40-86 25-65 (200)
185 TIGR02354 thiF_fam2 thiamine b 97.0 0.011 2.3E-07 56.5 12.1 34 43-81 21-54 (200)
186 PRK05472 redox-sensing transcr 96.9 0.0032 7E-08 60.4 8.3 53 24-83 67-121 (213)
187 PRK09496 trkA potassium transp 96.9 0.0063 1.4E-07 64.4 11.2 56 26-87 214-269 (453)
188 PRK00045 hemA glutamyl-tRNA re 96.9 0.0037 8E-08 66.3 9.3 40 42-86 181-220 (423)
189 PRK13940 glutamyl-tRNA reducta 96.9 0.0028 6.1E-08 67.1 8.3 52 29-87 169-220 (414)
190 cd05197 GH4_glycoside_hydrolas 96.9 0.0067 1.5E-07 64.4 10.8 110 44-202 1-148 (425)
191 TIGR00507 aroE shikimate 5-deh 96.9 0.0075 1.6E-07 59.9 10.5 66 14-87 90-155 (270)
192 PRK00436 argC N-acetyl-gamma-g 96.9 0.0062 1.3E-07 62.8 10.1 40 157-202 65-104 (343)
193 PLN02306 hydroxypyruvate reduc 96.8 0.0045 9.7E-08 64.9 9.0 112 43-203 165-278 (386)
194 cd05298 GH4_GlvA_pagL_like Gly 96.8 0.015 3.3E-07 62.0 12.7 111 44-202 1-148 (437)
195 PRK07589 ornithine cyclodeamin 96.8 0.0054 1.2E-07 63.4 9.1 95 42-194 128-222 (346)
196 cd05296 GH4_P_beta_glucosidase 96.8 0.012 2.7E-07 62.3 11.8 81 44-168 1-83 (419)
197 PRK07340 ornithine cyclodeamin 96.8 0.0065 1.4E-07 61.6 9.2 77 42-172 124-200 (304)
198 TIGR02992 ectoine_eutC ectoine 96.7 0.0046 9.9E-08 63.3 8.1 79 42-172 128-206 (326)
199 COG2423 Predicted ornithine cy 96.7 0.0051 1.1E-07 63.1 8.3 79 42-172 129-207 (330)
200 PTZ00325 malate dehydrogenase; 96.7 0.011 2.3E-07 60.6 10.6 36 42-81 7-43 (321)
201 PRK15409 bifunctional glyoxyla 96.7 0.0061 1.3E-07 62.4 8.7 97 42-203 144-242 (323)
202 PRK06487 glycerate dehydrogena 96.7 0.005 1.1E-07 62.9 7.9 90 43-203 148-239 (317)
203 KOG2653 6-phosphogluconate deh 96.7 0.0073 1.6E-07 61.8 8.7 104 38-200 1-108 (487)
204 PRK14188 bifunctional 5,10-met 96.7 0.0045 9.8E-08 62.6 7.2 31 43-79 158-189 (296)
205 PRK06407 ornithine cyclodeamin 96.7 0.006 1.3E-07 61.9 8.1 79 42-172 116-194 (301)
206 PRK00258 aroE shikimate 5-dehy 96.6 0.012 2.6E-07 58.8 10.1 68 14-87 95-162 (278)
207 COG0373 HemA Glutamyl-tRNA red 96.6 0.0061 1.3E-07 64.1 8.2 52 29-87 166-217 (414)
208 COG1712 Predicted dinucleotide 96.6 0.02 4.4E-07 55.4 10.9 82 44-182 1-82 (255)
209 COG1052 LdhA Lactate dehydroge 96.6 0.0083 1.8E-07 61.5 9.0 95 43-203 146-242 (324)
210 TIGR01035 hemA glutamyl-tRNA r 96.6 0.0063 1.4E-07 64.4 8.4 48 32-86 171-218 (417)
211 PRK06932 glycerate dehydrogena 96.6 0.0056 1.2E-07 62.5 7.7 91 43-203 147-239 (314)
212 TIGR01771 L-LDH-NAD L-lactate 96.6 0.011 2.5E-07 59.8 9.9 35 48-86 1-35 (299)
213 PF02423 OCD_Mu_crystall: Orni 96.6 0.0094 2E-07 60.7 9.0 78 42-172 127-204 (313)
214 PF02056 Glyco_hydro_4: Family 96.6 0.0084 1.8E-07 56.5 7.8 87 45-176 1-89 (183)
215 smart00859 Semialdhyde_dh Semi 96.5 0.014 3.1E-07 50.6 8.7 40 159-201 64-103 (122)
216 PF00899 ThiF: ThiF family; I 96.5 0.023 4.9E-07 50.3 10.2 36 43-83 2-37 (135)
217 cd01492 Aos1_SUMO Ubiquitin ac 96.5 0.013 2.7E-07 55.8 9.0 34 44-82 22-55 (197)
218 PF02629 CoA_binding: CoA bind 96.5 0.025 5.5E-07 47.3 9.8 81 42-182 2-84 (96)
219 PRK06823 ornithine cyclodeamin 96.5 0.013 2.9E-07 59.7 9.6 95 41-195 126-220 (315)
220 KOG1495 Lactate dehydrogenase 96.5 0.036 7.8E-07 55.0 12.0 137 40-236 17-165 (332)
221 PRK11579 putative oxidoreducta 96.5 0.019 4.2E-07 58.9 10.7 48 149-203 51-100 (346)
222 PLN02819 lysine-ketoglutarate 96.5 0.021 4.5E-07 66.7 11.9 44 42-86 568-620 (1042)
223 TIGR01850 argC N-acetyl-gamma- 96.5 0.016 3.6E-07 59.8 10.0 44 153-202 61-104 (346)
224 TIGR01921 DAP-DH diaminopimela 96.5 0.013 2.9E-07 59.9 9.1 35 43-82 3-38 (324)
225 PLN02494 adenosylhomocysteinas 96.4 0.02 4.3E-07 61.3 10.6 67 8-84 221-289 (477)
226 PRK13301 putative L-aspartate 96.4 0.028 6E-07 55.9 10.7 81 43-182 2-84 (267)
227 PRK06046 alanine dehydrogenase 96.4 0.011 2.5E-07 60.4 8.2 42 42-87 128-169 (326)
228 cd01487 E1_ThiF_like E1_ThiF_l 96.3 0.054 1.2E-06 50.4 11.6 33 45-82 1-33 (174)
229 COG0673 MviM Predicted dehydro 96.3 0.023 5E-07 57.5 9.9 98 42-203 2-103 (342)
230 TIGR02356 adenyl_thiF thiazole 96.3 0.035 7.6E-07 52.9 10.4 36 43-83 21-56 (202)
231 TIGR00518 alaDH alanine dehydr 96.3 0.023 5E-07 59.3 9.8 39 42-86 166-204 (370)
232 cd01080 NAD_bind_m-THF_DH_Cycl 96.2 0.018 3.8E-07 53.6 7.9 45 30-82 33-78 (168)
233 TIGR00936 ahcY adenosylhomocys 96.2 0.054 1.2E-06 57.2 12.4 69 8-84 162-230 (406)
234 PRK05476 S-adenosyl-L-homocyst 96.2 0.054 1.2E-06 57.5 12.2 49 29-84 199-247 (425)
235 PRK12475 thiamine/molybdopteri 96.2 0.053 1.2E-06 55.9 11.8 34 44-82 25-58 (338)
236 KOG0069 Glyoxylate/hydroxypyru 96.2 0.017 3.8E-07 59.2 8.0 95 44-203 163-259 (336)
237 TIGR01809 Shik-DH-AROM shikima 96.1 0.04 8.6E-07 55.3 10.5 68 15-87 97-164 (282)
238 PF00670 AdoHcyase_NAD: S-aden 96.1 0.062 1.3E-06 49.7 10.5 49 28-83 9-57 (162)
239 PRK08328 hypothetical protein; 96.1 0.063 1.4E-06 52.3 11.2 57 27-88 8-67 (231)
240 cd00401 AdoHcyase S-adenosyl-L 96.0 0.061 1.3E-06 57.0 11.7 50 29-85 189-238 (413)
241 PF13460 NAD_binding_10: NADH( 96.0 0.027 5.8E-07 51.6 7.9 35 46-86 1-36 (183)
242 PF03435 Saccharop_dh: Sacchar 96.0 0.015 3.1E-07 60.6 6.8 37 46-87 1-38 (386)
243 PRK09310 aroDE bifunctional 3- 96.0 0.03 6.5E-07 60.4 9.2 66 14-87 305-370 (477)
244 PF13380 CoA_binding_2: CoA bi 96.0 0.043 9.4E-07 47.7 8.5 84 44-199 1-88 (116)
245 PRK06199 ornithine cyclodeamin 95.9 0.038 8.3E-07 57.9 9.5 81 42-171 154-234 (379)
246 cd01483 E1_enzyme_family Super 95.9 0.071 1.5E-06 47.5 9.9 33 45-82 1-33 (143)
247 PRK14179 bifunctional 5,10-met 95.9 0.02 4.3E-07 57.6 6.9 29 44-78 159-188 (284)
248 cd01486 Apg7 Apg7 is an E1-lik 95.8 0.041 8.9E-07 55.8 8.9 43 154-201 102-144 (307)
249 cd01078 NAD_bind_H4MPT_DH NADP 95.8 0.022 4.8E-07 53.5 6.5 40 42-87 27-67 (194)
250 PF02254 TrkA_N: TrkA-N domain 95.8 0.055 1.2E-06 46.1 8.4 36 46-87 1-36 (116)
251 PRK08300 acetaldehyde dehydrog 95.8 0.082 1.8E-06 53.7 10.9 37 42-83 3-40 (302)
252 PRK12548 shikimate 5-dehydroge 95.7 0.053 1.2E-06 54.6 9.2 61 14-82 99-160 (289)
253 PRK14874 aspartate-semialdehyd 95.6 0.058 1.3E-06 55.5 9.3 96 43-200 1-97 (334)
254 PRK06718 precorrin-2 dehydroge 95.5 0.064 1.4E-06 51.3 8.6 34 42-81 9-42 (202)
255 PRK05671 aspartate-semialdehyd 95.5 0.074 1.6E-06 54.8 9.6 24 42-65 3-27 (336)
256 PLN02968 Probable N-acetyl-gam 95.5 0.058 1.3E-06 56.6 8.8 37 42-83 37-74 (381)
257 cd00757 ThiF_MoeB_HesA_family 95.5 0.1 2.3E-06 50.5 10.0 35 44-83 22-56 (228)
258 TIGR03215 ac_ald_DH_ac acetald 95.4 0.14 3E-06 51.7 10.9 36 44-84 2-38 (285)
259 PRK04148 hypothetical protein; 95.4 0.12 2.7E-06 46.3 9.3 88 42-186 16-103 (134)
260 cd01485 E1-1_like Ubiquitin ac 95.3 0.13 2.9E-06 48.8 10.1 34 44-82 20-53 (198)
261 PRK04207 glyceraldehyde-3-phos 95.2 0.15 3.2E-06 52.7 10.8 35 147-181 65-99 (341)
262 PRK10669 putative cation:proto 95.2 0.058 1.3E-06 59.2 8.3 38 44-87 418-455 (558)
263 PTZ00075 Adenosylhomocysteinas 95.2 0.099 2.2E-06 56.1 9.7 36 43-84 254-289 (476)
264 COG0169 AroE Shikimate 5-dehyd 95.2 0.12 2.5E-06 52.2 9.6 68 15-87 98-165 (283)
265 TIGR02355 moeB molybdopterin s 95.2 0.14 3E-06 50.3 10.0 40 44-88 25-64 (240)
266 PRK12749 quinate/shikimate deh 95.2 0.21 4.5E-06 50.5 11.3 63 14-83 97-159 (288)
267 COG4408 Uncharacterized protei 95.1 1.6 3.5E-05 44.7 17.3 234 42-325 3-274 (431)
268 PRK06719 precorrin-2 dehydroge 95.0 0.11 2.4E-06 47.7 8.2 33 42-80 12-44 (157)
269 PRK08644 thiamine biosynthesis 95.0 0.13 2.8E-06 49.6 9.0 34 44-82 29-62 (212)
270 cd05311 NAD_bind_2_malic_enz N 95.0 0.17 3.6E-06 49.3 9.7 35 43-82 25-61 (226)
271 PRK05690 molybdopterin biosynt 94.9 0.17 3.7E-06 49.7 9.8 36 43-83 32-67 (245)
272 PF00070 Pyr_redox: Pyridine n 94.9 0.054 1.2E-06 43.4 5.2 35 45-85 1-35 (80)
273 COG1486 CelF Alpha-galactosida 94.9 0.084 1.8E-06 56.0 7.9 87 42-173 2-90 (442)
274 PRK14982 acyl-ACP reductase; P 94.9 0.1 2.2E-06 53.9 8.4 58 24-86 137-195 (340)
275 TIGR02717 AcCoA-syn-alpha acet 94.9 0.093 2E-06 56.1 8.4 92 42-202 6-101 (447)
276 PRK07688 thiamine/molybdopteri 94.8 0.15 3.3E-06 52.6 9.6 35 43-82 24-58 (339)
277 COG0002 ArgC Acetylglutamate s 94.7 0.13 2.8E-06 52.9 8.5 36 42-82 1-37 (349)
278 CHL00194 ycf39 Ycf39; Provisio 94.7 0.061 1.3E-06 54.3 6.2 35 44-84 1-36 (317)
279 PRK03659 glutathione-regulated 94.7 0.11 2.4E-06 57.6 8.6 39 43-87 400-438 (601)
280 COG0289 DapB Dihydrodipicolina 94.6 0.21 4.5E-06 49.6 9.3 148 43-273 2-151 (266)
281 PRK12409 D-amino acid dehydrog 94.6 0.045 9.8E-07 57.1 5.0 33 44-82 2-34 (410)
282 PRK14175 bifunctional 5,10-met 94.6 0.11 2.4E-06 52.4 7.5 33 43-81 158-191 (286)
283 COG2910 Putative NADH-flavin r 94.5 0.045 9.8E-07 51.6 4.2 37 44-86 1-38 (211)
284 PRK14027 quinate/shikimate deh 94.5 0.26 5.7E-06 49.6 10.1 67 14-87 100-166 (283)
285 PRK11863 N-acetyl-gamma-glutam 94.4 0.17 3.7E-06 51.7 8.5 38 157-200 47-84 (313)
286 PF13241 NAD_binding_7: Putati 94.4 0.17 3.7E-06 42.9 7.2 35 42-82 6-40 (103)
287 PRK05597 molybdopterin biosynt 94.3 0.18 3.9E-06 52.4 8.7 34 44-82 29-62 (355)
288 TIGR01381 E1_like_apg7 E1-like 94.3 0.18 4E-06 55.9 9.1 34 44-82 339-372 (664)
289 PRK00711 D-amino acid dehydrog 94.3 0.055 1.2E-06 56.4 4.9 34 44-83 1-34 (416)
290 PRK06153 hypothetical protein; 94.2 0.29 6.3E-06 51.3 9.7 34 44-82 177-210 (393)
291 PRK07236 hypothetical protein; 94.1 0.075 1.6E-06 55.1 5.4 38 40-83 3-40 (386)
292 PRK06753 hypothetical protein; 94.1 0.063 1.4E-06 55.1 4.7 34 44-83 1-34 (373)
293 COG0686 Ald Alanine dehydrogen 94.0 0.17 3.7E-06 51.4 7.4 44 37-86 162-205 (371)
294 PRK06728 aspartate-semialdehyd 94.0 0.39 8.5E-06 49.8 10.4 97 42-200 4-102 (347)
295 PRK05600 thiamine biosynthesis 94.0 0.45 9.8E-06 49.7 10.9 35 43-82 41-75 (370)
296 PRK03562 glutathione-regulated 93.9 0.21 4.5E-06 55.7 8.6 40 42-87 399-438 (621)
297 PRK08163 salicylate hydroxylas 93.7 0.089 1.9E-06 54.4 5.1 35 43-83 4-38 (396)
298 PF05368 NmrA: NmrA-like famil 93.7 0.22 4.8E-06 47.7 7.4 32 46-83 1-33 (233)
299 PRK08223 hypothetical protein; 93.7 0.45 9.7E-06 48.0 9.8 38 44-86 28-65 (287)
300 PRK06349 homoserine dehydrogen 93.6 0.27 5.9E-06 52.2 8.7 23 43-65 3-25 (426)
301 PRK08762 molybdopterin biosynt 93.6 0.77 1.7E-05 47.9 11.9 35 43-82 135-169 (376)
302 PLN02383 aspartate semialdehyd 93.6 0.43 9.3E-06 49.4 9.9 39 156-200 65-103 (344)
303 cd01484 E1-2_like Ubiquitin ac 93.6 0.57 1.2E-05 45.9 10.1 37 45-86 1-37 (234)
304 PRK06847 hypothetical protein; 93.5 0.098 2.1E-06 53.6 5.0 36 42-83 3-38 (375)
305 PRK15116 sulfur acceptor prote 93.5 0.11 2.5E-06 51.8 5.3 57 25-86 9-68 (268)
306 PRK10206 putative oxidoreducta 93.5 0.3 6.6E-06 50.3 8.6 48 149-203 51-100 (344)
307 PRK07411 hypothetical protein; 93.5 0.33 7.2E-06 51.0 8.9 39 43-86 38-76 (390)
308 PRK12550 shikimate 5-dehydroge 93.5 0.32 6.8E-06 48.7 8.4 66 14-87 96-161 (272)
309 PF01494 FAD_binding_3: FAD bi 93.5 0.1 2.3E-06 52.0 5.0 35 44-84 2-36 (356)
310 TIGR01761 thiaz-red thiazoliny 93.3 0.52 1.1E-05 48.8 9.8 41 42-87 2-43 (343)
311 TIGR00978 asd_EA aspartate-sem 93.3 0.5 1.1E-05 48.7 9.7 35 157-197 70-104 (341)
312 PRK08664 aspartate-semialdehyd 93.3 0.55 1.2E-05 48.5 10.1 36 43-83 3-39 (349)
313 PRK08773 2-octaprenyl-3-methyl 93.2 0.11 2.5E-06 53.8 5.0 36 41-82 4-39 (392)
314 PRK06270 homoserine dehydrogen 93.2 0.49 1.1E-05 48.8 9.5 23 43-65 2-24 (341)
315 cd01491 Ube1_repeat1 Ubiquitin 93.1 0.53 1.2E-05 47.5 9.3 38 44-86 20-57 (286)
316 PRK08040 putative semialdehyde 93.0 0.6 1.3E-05 48.2 9.7 96 42-200 3-100 (336)
317 PRK14189 bifunctional 5,10-met 92.9 0.27 5.9E-06 49.5 6.9 29 44-78 159-188 (285)
318 PRK05868 hypothetical protein; 92.9 0.12 2.6E-06 53.6 4.6 36 43-84 1-36 (372)
319 PRK07588 hypothetical protein; 92.9 0.12 2.6E-06 53.6 4.6 34 44-83 1-34 (391)
320 TIGR01296 asd_B aspartate-semi 92.9 0.39 8.5E-06 49.6 8.2 36 157-198 58-93 (339)
321 PF03447 NAD_binding_3: Homose 92.8 0.36 7.7E-06 41.5 6.7 48 149-202 46-95 (117)
322 PRK07878 molybdopterin biosynt 92.8 0.72 1.6E-05 48.5 10.2 36 43-83 42-77 (392)
323 PRK07538 hypothetical protein; 92.7 0.13 2.9E-06 53.8 4.6 34 44-83 1-34 (413)
324 PRK05678 succinyl-CoA syntheta 92.7 1.1 2.3E-05 45.5 10.8 51 148-203 51-103 (291)
325 PRK07877 hypothetical protein; 92.6 0.26 5.6E-06 55.8 7.0 52 26-82 87-141 (722)
326 TIGR01851 argC_other N-acetyl- 92.6 0.47 1E-05 48.4 8.1 37 156-198 45-81 (310)
327 PF13450 NAD_binding_8: NAD(P) 92.6 0.21 4.5E-06 39.2 4.4 30 48-83 1-30 (68)
328 cd01489 Uba2_SUMO Ubiquitin ac 92.5 0.57 1.2E-05 47.9 8.7 40 45-89 1-40 (312)
329 PRK06185 hypothetical protein; 92.5 0.16 3.5E-06 52.8 4.9 38 40-83 3-40 (407)
330 COG0665 DadA Glycine/D-amino a 92.4 0.19 4.1E-06 51.6 5.2 35 42-82 3-37 (387)
331 cd05191 NAD_bind_amino_acid_DH 92.3 0.47 1E-05 38.7 6.4 34 42-80 22-55 (86)
332 PF01266 DAO: FAD dependent ox 92.3 0.2 4.4E-06 50.0 5.1 31 45-81 1-31 (358)
333 PRK07494 2-octaprenyl-6-methox 92.2 0.16 3.5E-06 52.4 4.4 34 44-83 8-41 (388)
334 TIGR03219 salicylate_mono sali 92.2 0.17 3.7E-06 53.0 4.6 34 44-83 1-35 (414)
335 TIGR01470 cysG_Nterm siroheme 92.1 1.1 2.3E-05 42.9 9.7 34 43-82 9-42 (205)
336 TIGR00561 pntA NAD(P) transhyd 92.0 0.91 2E-05 49.4 9.9 39 43-87 164-202 (511)
337 COG0654 UbiH 2-polyprenyl-6-me 92.0 0.18 3.9E-06 52.5 4.4 33 43-81 2-34 (387)
338 PRK07364 2-octaprenyl-6-methox 91.8 0.22 4.7E-06 51.9 4.9 35 43-83 18-52 (415)
339 PRK10792 bifunctional 5,10-met 91.7 0.62 1.4E-05 47.0 7.7 32 43-80 159-191 (285)
340 PRK14192 bifunctional 5,10-met 91.6 0.48 1E-05 47.8 6.9 34 42-81 158-192 (283)
341 KOG1502 Flavonol reductase/cin 91.6 0.54 1.2E-05 48.2 7.2 37 42-84 5-42 (327)
342 PF03059 NAS: Nicotianamine sy 91.6 1.3 2.8E-05 44.5 9.8 107 35-194 113-227 (276)
343 cd01488 Uba3_RUB Ubiquitin act 91.4 0.6 1.3E-05 47.3 7.3 41 45-90 1-41 (291)
344 TIGR02360 pbenz_hydroxyl 4-hyd 91.3 0.27 5.9E-06 51.3 4.9 34 44-83 3-36 (390)
345 PRK00683 murD UDP-N-acetylmura 91.2 0.5 1.1E-05 49.9 6.9 34 44-83 4-37 (418)
346 PRK11259 solA N-methyltryptoph 91.2 0.25 5.5E-06 50.5 4.6 32 45-82 5-36 (376)
347 PRK07045 putative monooxygenas 91.2 0.28 6.1E-06 50.8 4.9 37 42-84 4-40 (388)
348 COG0300 DltE Short-chain dehyd 91.1 0.44 9.6E-06 47.5 5.9 42 42-89 5-47 (265)
349 TIGR01377 soxA_mon sarcosine o 91.0 0.28 6E-06 50.3 4.6 32 45-82 2-33 (380)
350 cd00762 NAD_bind_malic_enz NAD 91.0 1.3 2.9E-05 43.8 9.1 48 151-202 95-146 (254)
351 PRK10537 voltage-gated potassi 90.8 1.8 3.8E-05 45.7 10.5 33 43-81 240-272 (393)
352 TIGR02028 ChlP geranylgeranyl 90.8 0.29 6.3E-06 51.3 4.6 34 44-83 1-34 (398)
353 cd05212 NAD_bind_m-THF_DH_Cycl 90.8 1.9 4.2E-05 38.9 9.3 36 153-196 64-99 (140)
354 PLN00093 geranylgeranyl diphos 90.8 0.37 8E-06 51.6 5.4 38 40-83 36-73 (450)
355 COG1064 AdhP Zn-dependent alco 90.8 1.5 3.3E-05 45.3 9.6 38 44-87 168-205 (339)
356 PLN02172 flavin-containing mon 90.7 0.31 6.8E-06 52.3 4.8 35 43-83 10-44 (461)
357 PRK08849 2-octaprenyl-3-methyl 90.6 0.32 6.8E-06 50.5 4.7 33 44-82 4-36 (384)
358 PRK06598 aspartate-semialdehyd 90.6 1.1 2.5E-05 46.8 8.7 38 157-200 62-101 (369)
359 PRK06617 2-octaprenyl-6-methox 90.5 0.29 6.3E-06 50.6 4.3 32 44-81 2-33 (374)
360 PRK06475 salicylate hydroxylas 90.5 0.29 6.3E-06 51.0 4.3 34 44-83 3-36 (400)
361 PRK08013 oxidoreductase; Provi 90.5 0.32 7E-06 50.8 4.6 34 44-83 4-37 (400)
362 KOG2741 Dimeric dihydrodiol de 90.4 1.5 3.2E-05 45.2 9.0 90 39-182 2-94 (351)
363 PLN02520 bifunctional 3-dehydr 90.4 0.81 1.8E-05 50.1 7.8 67 15-87 343-417 (529)
364 TIGR01988 Ubi-OHases Ubiquinon 90.4 0.32 6.9E-06 49.8 4.4 32 46-83 2-33 (385)
365 PRK05335 tRNA (uracil-5-)-meth 90.4 0.36 7.7E-06 51.5 4.8 34 43-82 2-35 (436)
366 PRK08020 ubiF 2-octaprenyl-3-m 90.3 0.33 7.1E-06 50.2 4.5 34 43-82 5-38 (391)
367 TIGR03649 ergot_EASG ergot alk 90.3 1.5 3.1E-05 43.3 8.9 34 45-84 1-35 (285)
368 PRK08132 FAD-dependent oxidore 90.1 0.39 8.5E-06 52.4 5.1 39 39-83 19-57 (547)
369 PRK08243 4-hydroxybenzoate 3-m 90.1 0.39 8.5E-06 49.9 4.9 35 43-83 2-36 (392)
370 TIGR01408 Ube1 ubiquitin-activ 90.1 0.99 2.1E-05 53.1 8.5 58 25-83 398-459 (1008)
371 cd05295 MDH_like Malate dehydr 90.0 5.5 0.00012 42.8 13.4 38 42-80 122-162 (452)
372 PRK07608 ubiquinone biosynthes 90.0 0.4 8.6E-06 49.4 4.8 35 43-83 5-39 (388)
373 PRK06392 homoserine dehydrogen 90.0 1.3 2.8E-05 45.5 8.4 21 44-64 1-21 (326)
374 TIGR03466 HpnA hopanoid-associ 90.0 0.39 8.5E-06 47.8 4.5 35 44-84 1-36 (328)
375 PLN02464 glycerol-3-phosphate 89.8 0.52 1.1E-05 52.6 5.7 52 24-81 52-103 (627)
376 PF02882 THF_DHG_CYH_C: Tetrah 89.8 1.3 2.8E-05 40.9 7.4 34 41-80 34-68 (160)
377 TIGR03364 HpnW_proposed FAD de 89.7 0.41 8.8E-06 49.0 4.5 32 45-82 2-33 (365)
378 TIGR01019 sucCoAalpha succinyl 89.7 3.6 7.8E-05 41.6 11.1 93 42-202 5-100 (286)
379 PRK01747 mnmC bifunctional tRN 89.6 0.37 7.9E-06 54.0 4.4 33 44-82 261-293 (662)
380 PLN00141 Tic62-NAD(P)-related 89.6 0.55 1.2E-05 45.5 5.1 37 42-84 16-53 (251)
381 PRK12266 glpD glycerol-3-phosp 89.6 0.49 1.1E-05 51.4 5.2 34 42-81 5-38 (508)
382 PRK06126 hypothetical protein; 89.5 0.46 1E-05 51.7 5.0 35 43-83 7-41 (545)
383 PF08484 Methyltransf_14: C-me 89.5 1.1 2.4E-05 41.3 6.7 97 29-186 54-151 (160)
384 PLN02852 ferredoxin-NADP+ redu 89.5 0.55 1.2E-05 50.9 5.5 38 40-83 23-62 (491)
385 PLN02985 squalene monooxygenas 89.4 0.54 1.2E-05 51.2 5.4 35 43-83 43-77 (514)
386 PRK09126 hypothetical protein; 89.4 0.44 9.5E-06 49.2 4.5 34 44-83 4-37 (392)
387 TIGR03736 PRTRC_ThiF PRTRC sys 89.3 0.53 1.1E-05 46.4 4.8 40 42-82 10-55 (244)
388 PRK14851 hypothetical protein; 89.3 1.4 3.1E-05 49.6 8.7 60 25-89 22-84 (679)
389 TIGR01408 Ube1 ubiquitin-activ 89.3 1.8 3.8E-05 51.0 9.8 38 44-86 25-62 (1008)
390 PF00743 FMO-like: Flavin-bind 89.2 0.5 1.1E-05 51.8 5.0 35 44-84 2-36 (531)
391 PRK05714 2-octaprenyl-3-methyl 89.2 0.43 9.2E-06 49.7 4.3 32 45-82 4-35 (405)
392 PRK12770 putative glutamate sy 89.1 0.62 1.4E-05 47.8 5.4 36 42-83 17-52 (352)
393 PRK08374 homoserine dehydrogen 89.1 2.2 4.7E-05 44.0 9.3 42 153-200 82-125 (336)
394 PRK13369 glycerol-3-phosphate 89.0 0.55 1.2E-05 50.8 5.1 36 41-82 4-39 (502)
395 PRK12779 putative bifunctional 88.9 0.53 1.1E-05 55.1 5.1 39 38-82 301-339 (944)
396 KOG1399 Flavin-containing mono 88.9 0.44 9.6E-06 51.0 4.2 36 43-84 6-41 (448)
397 PLN03075 nicotianamine synthas 88.8 3.9 8.5E-05 41.5 10.7 42 42-87 123-164 (296)
398 PLN02686 cinnamoyl-CoA reducta 88.8 1.2 2.5E-05 46.3 7.1 57 23-85 8-90 (367)
399 PRK08850 2-octaprenyl-6-methox 88.7 0.49 1.1E-05 49.4 4.3 32 44-81 5-36 (405)
400 PLN02927 antheraxanthin epoxid 88.7 0.54 1.2E-05 52.8 4.9 35 42-82 80-114 (668)
401 COG3349 Uncharacterized conser 88.6 0.51 1.1E-05 50.9 4.4 33 44-82 1-33 (485)
402 PRK09424 pntA NAD(P) transhydr 88.6 2.4 5.2E-05 46.3 9.6 40 42-87 164-203 (509)
403 PRK12769 putative oxidoreducta 88.5 1.1 2.3E-05 50.3 7.2 34 43-82 327-360 (654)
404 PRK12810 gltD glutamate syntha 88.5 0.6 1.3E-05 50.1 5.0 36 42-83 142-177 (471)
405 PRK12814 putative NADPH-depend 88.5 0.66 1.4E-05 52.0 5.4 36 42-83 192-227 (652)
406 PRK14176 bifunctional 5,10-met 88.5 1.6 3.5E-05 44.1 7.6 30 44-79 165-195 (287)
407 cd05312 NAD_bind_1_malic_enz N 88.4 2.5 5.5E-05 42.5 8.9 47 152-202 95-145 (279)
408 TIGR01318 gltD_gamma_fam gluta 88.4 0.9 1.9E-05 48.8 6.2 35 42-82 140-174 (467)
409 PRK11749 dihydropyrimidine deh 88.3 0.67 1.4E-05 49.5 5.1 37 41-83 138-174 (457)
410 COG0644 FixC Dehydrogenases (f 88.3 0.61 1.3E-05 48.8 4.7 35 43-83 3-37 (396)
411 PRK14191 bifunctional 5,10-met 88.2 1.4 3E-05 44.5 6.9 30 43-78 157-187 (285)
412 PRK12829 short chain dehydroge 88.1 1.1 2.3E-05 43.2 6.0 46 33-86 3-49 (264)
413 PRK05884 short chain dehydroge 88.1 0.81 1.8E-05 43.6 5.1 37 44-86 1-38 (223)
414 PRK12809 putative oxidoreducta 88.0 1.2 2.6E-05 49.8 7.1 35 43-83 310-344 (639)
415 PF02353 CMAS: Mycolic acid cy 87.9 8.6 0.00019 38.5 12.5 68 14-88 32-101 (273)
416 TIGR02032 GG-red-SF geranylger 87.9 0.69 1.5E-05 45.1 4.6 33 45-83 2-34 (295)
417 TIGR00137 gid_trmFO tRNA:m(5)U 87.7 0.62 1.3E-05 49.7 4.3 33 45-83 2-34 (433)
418 PRK11101 glpA sn-glycerol-3-ph 87.7 0.77 1.7E-05 50.4 5.2 33 44-82 7-39 (546)
419 PRK08244 hypothetical protein; 87.6 0.69 1.5E-05 49.7 4.7 34 44-83 3-36 (493)
420 COG1063 Tdh Threonine dehydrog 87.5 3.4 7.4E-05 42.6 9.6 38 45-87 171-208 (350)
421 PTZ00188 adrenodoxin reductase 87.5 1 2.2E-05 48.9 5.8 43 34-83 31-74 (506)
422 PRK12831 putative oxidoreducta 87.4 0.92 2E-05 48.7 5.5 36 41-82 138-173 (464)
423 PRK10538 malonic semialdehyde 87.4 1 2.2E-05 43.3 5.4 37 44-86 1-38 (248)
424 COG0136 Asd Aspartate-semialde 87.3 2.7 5.8E-05 43.3 8.5 37 158-200 64-100 (334)
425 PRK06183 mhpA 3-(3-hydroxyphen 87.3 0.81 1.8E-05 49.9 5.1 36 42-83 9-44 (538)
426 PRK07523 gluconate 5-dehydroge 87.3 1.3 2.8E-05 42.7 6.0 38 43-86 10-48 (255)
427 PRK11728 hydroxyglutarate oxid 87.2 0.85 1.8E-05 47.4 5.0 34 44-82 3-37 (393)
428 TIGR01292 TRX_reduct thioredox 87.2 0.78 1.7E-05 45.0 4.5 32 45-82 2-33 (300)
429 PTZ00367 squalene epoxidase; P 87.0 0.85 1.8E-05 50.4 5.1 34 43-82 33-66 (567)
430 cd01490 Ube1_repeat2 Ubiquitin 87.0 3.5 7.5E-05 44.1 9.4 38 45-83 1-39 (435)
431 cd05211 NAD_bind_Glu_Leu_Phe_V 87.0 2.9 6.3E-05 40.4 8.2 36 42-82 22-57 (217)
432 PRK08340 glucose-1-dehydrogena 86.9 1.1 2.3E-05 43.4 5.3 37 44-86 1-38 (259)
433 cd00755 YgdL_like Family of ac 86.9 0.9 2E-05 44.4 4.7 35 44-83 12-46 (231)
434 COG1648 CysG Siroheme synthase 86.8 3.6 7.9E-05 39.6 8.7 35 42-82 11-45 (210)
435 TIGR01745 asd_gamma aspartate- 86.8 3.3 7.1E-05 43.3 8.9 38 157-200 61-100 (366)
436 PRK11445 putative oxidoreducta 86.8 0.77 1.7E-05 47.1 4.4 33 44-83 2-34 (351)
437 TIGR00031 UDP-GALP_mutase UDP- 86.7 0.89 1.9E-05 47.7 4.8 33 44-82 2-34 (377)
438 PRK06184 hypothetical protein; 86.6 0.78 1.7E-05 49.5 4.5 35 44-84 4-38 (502)
439 PRK13512 coenzyme A disulfide 86.6 0.99 2.1E-05 47.9 5.2 36 43-82 1-36 (438)
440 TIGR01316 gltA glutamate synth 86.5 0.94 2E-05 48.3 5.0 34 43-82 133-166 (449)
441 PF01262 AlaDh_PNT_C: Alanine 86.5 1.3 2.9E-05 40.7 5.3 41 41-87 18-58 (168)
442 PRK07774 short chain dehydroge 86.5 1.6 3.4E-05 41.7 6.1 37 44-86 7-44 (250)
443 PRK08017 oxidoreductase; Provi 86.5 1.1 2.5E-05 42.9 5.1 36 44-85 3-39 (256)
444 PRK08294 phenol 2-monooxygenas 86.4 0.77 1.7E-05 51.4 4.4 36 43-84 32-68 (634)
445 PF00185 OTCace: Aspartate/orn 86.3 11 0.00024 34.4 11.3 33 44-82 3-37 (158)
446 KOG1494 NAD-dependent malate d 86.3 2.5 5.4E-05 42.6 7.3 45 33-81 18-63 (345)
447 PRK04176 ribulose-1,5-biphosph 86.1 1.2 2.7E-05 44.0 5.2 34 44-83 26-59 (257)
448 PRK07454 short chain dehydroge 86.1 1.6 3.5E-05 41.6 5.9 39 42-86 5-44 (241)
449 COG1233 Phytoene dehydrogenase 86.0 0.95 2.1E-05 48.9 4.7 34 43-82 3-36 (487)
450 PF13738 Pyr_redox_3: Pyridine 86.0 1 2.2E-05 41.7 4.3 34 47-86 1-35 (203)
451 PRK00536 speE spermidine synth 85.9 6.2 0.00013 39.4 10.1 101 41-200 71-173 (262)
452 PRK05257 malate:quinone oxidor 85.9 1 2.2E-05 48.9 4.9 37 43-83 5-41 (494)
453 PRK10157 putative oxidoreducta 85.9 1 2.2E-05 47.8 4.8 35 43-83 5-39 (428)
454 TIGR02023 BchP-ChlP geranylger 85.9 0.96 2.1E-05 47.0 4.6 31 45-81 2-32 (388)
455 TIGR01989 COQ6 Ubiquinone bios 85.8 0.83 1.8E-05 48.4 4.1 31 45-81 2-36 (437)
456 PRK07326 short chain dehydroge 85.8 1.6 3.6E-05 41.2 5.8 37 44-86 7-44 (237)
457 PRK15181 Vi polysaccharide bio 85.8 1.3 2.8E-05 45.3 5.4 45 30-83 5-50 (348)
458 PRK07208 hypothetical protein; 85.7 1.1 2.3E-05 47.9 5.0 35 42-82 3-37 (479)
459 PRK05732 2-octaprenyl-6-methox 85.7 0.96 2.1E-05 46.6 4.4 34 43-81 3-38 (395)
460 TIGR00292 thiazole biosynthesi 85.7 1.3 2.8E-05 43.8 5.1 34 44-83 22-55 (254)
461 TIGR03140 AhpF alkyl hydropero 85.7 1.6 3.5E-05 47.4 6.3 56 18-79 181-242 (515)
462 TIGR01373 soxB sarcosine oxida 85.6 1 2.2E-05 46.9 4.6 35 44-82 31-65 (407)
463 PRK00676 hemA glutamyl-tRNA re 85.6 2.3 4.9E-05 44.0 7.0 46 31-83 164-209 (338)
464 PRK07233 hypothetical protein; 85.5 0.96 2.1E-05 47.1 4.4 32 45-82 1-32 (434)
465 PF03949 Malic_M: Malic enzyme 85.5 3.7 8.1E-05 40.8 8.2 112 44-202 26-146 (255)
466 PRK07102 short chain dehydroge 85.4 1.5 3.2E-05 41.9 5.4 38 43-86 1-39 (243)
467 PLN02214 cinnamoyl-CoA reducta 85.4 1.3 2.8E-05 45.3 5.2 42 37-84 4-46 (342)
468 PRK12939 short chain dehydroge 85.4 1.9 4.1E-05 41.0 6.0 38 43-86 7-45 (250)
469 COG2907 Predicted NAD/FAD-bind 85.4 0.76 1.6E-05 47.6 3.3 35 41-82 6-40 (447)
470 TIGR01317 GOGAT_sm_gam glutama 85.3 2.2 4.7E-05 46.2 7.1 34 43-82 143-176 (485)
471 TIGR02733 desat_CrtD C-3',4' d 85.3 1.1 2.4E-05 48.1 4.8 33 44-82 2-34 (492)
472 PRK14183 bifunctional 5,10-met 85.2 2.5 5.5E-05 42.6 6.9 29 44-78 158-187 (281)
473 PF07992 Pyr_redox_2: Pyridine 85.2 1.4 3E-05 40.6 4.9 32 45-82 1-32 (201)
474 PRK14178 bifunctional 5,10-met 85.2 2.6 5.7E-05 42.4 7.0 37 153-197 188-224 (279)
475 PRK05562 precorrin-2 dehydroge 85.1 6.3 0.00014 38.4 9.5 34 43-82 25-58 (223)
476 PRK03369 murD UDP-N-acetylmura 85.1 2.4 5.2E-05 45.8 7.3 34 44-83 13-46 (488)
477 PRK14106 murD UDP-N-acetylmura 85.1 1.4 3E-05 46.7 5.4 34 43-82 5-38 (450)
478 PRK07023 short chain dehydroge 85.0 1.3 2.7E-05 42.4 4.6 35 43-83 1-36 (243)
479 PRK05993 short chain dehydroge 85.0 1.8 3.9E-05 42.6 5.8 37 44-86 5-42 (277)
480 PRK08267 short chain dehydroge 84.9 1.6 3.5E-05 42.1 5.4 38 44-87 2-40 (260)
481 PRK11908 NAD-dependent epimera 84.9 1.3 2.9E-05 44.9 5.0 36 43-83 1-37 (347)
482 PRK06567 putative bifunctional 84.9 1.2 2.7E-05 51.9 5.1 34 42-81 382-415 (1028)
483 PRK07231 fabG 3-ketoacyl-(acyl 84.9 1.7 3.8E-05 41.3 5.5 37 44-86 6-43 (251)
484 PRK00961 H(2)-dependent methyl 84.8 16 0.00036 36.8 12.2 117 147-279 128-247 (342)
485 PLN02487 zeta-carotene desatur 84.8 1.4 3E-05 48.8 5.3 36 42-83 74-109 (569)
486 PRK14852 hypothetical protein; 84.8 2.8 6E-05 49.0 7.9 42 43-89 332-373 (989)
487 PLN02695 GDP-D-mannose-3',5'-e 84.7 1.4 3E-05 45.7 5.1 35 42-82 20-55 (370)
488 PRK05866 short chain dehydroge 84.7 1.7 3.7E-05 43.4 5.6 38 44-87 41-79 (293)
489 PRK06912 acoL dihydrolipoamide 84.6 1.2 2.7E-05 47.4 4.8 33 44-82 1-33 (458)
490 PRK07845 flavoprotein disulfid 84.5 1.3 2.7E-05 47.5 4.8 34 43-82 1-34 (466)
491 PRK07190 hypothetical protein; 84.3 1.4 3E-05 47.7 5.0 34 44-83 6-39 (487)
492 TIGR01984 UbiH 2-polyprenyl-6- 84.3 1.2 2.6E-05 45.7 4.4 33 46-83 2-34 (382)
493 PRK14169 bifunctional 5,10-met 84.2 3.1 6.8E-05 41.9 7.1 29 44-78 157-186 (282)
494 PF03486 HI0933_like: HI0933-l 84.0 1.2 2.5E-05 47.3 4.2 36 45-86 2-37 (409)
495 TIGR03315 Se_ygfK putative sel 83.9 1.5 3.2E-05 51.6 5.3 35 42-82 536-570 (1012)
496 PRK08703 short chain dehydroge 83.9 2.3 5E-05 40.5 5.9 37 44-86 7-44 (239)
497 PRK08265 short chain dehydroge 83.8 2.4 5.1E-05 41.2 6.0 38 43-86 6-44 (261)
498 PRK06194 hypothetical protein; 83.8 2.3 5E-05 41.7 6.0 38 43-86 6-44 (287)
499 PRK14186 bifunctional 5,10-met 83.8 3.3 7.2E-05 42.1 7.1 36 153-196 194-229 (297)
500 TIGR02130 dapB_plant dihydrodi 83.7 7.7 0.00017 39.0 9.6 68 151-238 58-127 (275)
No 1
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=4.4e-70 Score=544.14 Aligned_cols=322 Identities=26% Similarity=0.414 Sum_probs=294.4
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
+|||+|||+|+||+++|..|+++ | |+|++|.|+++.+++++ ..+ +|++|+|++.
T Consensus 1 ~~kI~ViGaGswGTALA~~la~n-g-----~~V~lw~r~~~~~~~i~---------~~~-------~N~~yLp~i~---- 54 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARN-G-----HEVRLWGRDEEIVAEIN---------ETR-------ENPKYLPGIL---- 54 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhc-C-----CeeEEEecCHHHHHHHH---------hcC-------cCccccCCcc----
Confidence 47999999999999999999999 8 99999999998877643 222 5889998762
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
+| .++.+++|+++++++||+|+++||+++++++++++.+++.+ ++++|+++||+++
T Consensus 55 ---lp------------------~~l~at~Dl~~a~~~ad~iv~avPs~~~r~v~~~l~~~l~~---~~~iv~~sKGie~ 110 (329)
T COG0240 55 ---LP------------------PNLKATTDLAEALDGADIIVIAVPSQALREVLRQLKPLLLK---DAIIVSATKGLEP 110 (329)
T ss_pred ---CC------------------cccccccCHHHHHhcCCEEEEECChHHHHHHHHHHhhhccC---CCeEEEEeccccC
Confidence 32 26889999999999999999999999999999999988876 7899999999999
Q ss_pred ccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEE-eCChhHHHHHHHHhcCCCceEEecCChHHHH
Q 012547 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHE 281 (461)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~-~~~~~~~~~l~~ll~~~g~~v~~s~Di~gve 281 (461)
+ +..++|+++++.++. .++++++|||||.|++++.|+.+++ +.+.+.++.++++|++++|++|.++|++|+|
T Consensus 111 ~-----t~~l~seii~e~l~~--~~~~vLSGPs~A~EVa~g~pta~~vas~d~~~a~~v~~~f~~~~Frvy~~~Dv~Gve 183 (329)
T COG0240 111 E-----TGRLLSEIIEEELPD--NPIAVLSGPSFAKEVAQGLPTAVVVASNDQEAAEKVQALFSSPYFRVYTSTDVIGVE 183 (329)
T ss_pred C-----CcchHHHHHHHHcCC--CeEEEEECccHHHHHhcCCCcEEEEecCCHHHHHHHHHHhCCCcEEEEecCchhhhH
Confidence 8 689999999999974 3589999999999999999998876 5678889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccC---ccchHHHHHHHHHHHHHHHHHHhCCCchhhccC-hhhhhhhhcc--ccchhHHHHHHhc
Q 012547 282 VMGGLKNVYAIGAALTNE---SATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLL--KGRNAWYGQELAK 355 (461)
Q Consensus 282 ~~galKNv~Ai~~Gi~~g---~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~-glgDl~~T~~--~sRN~~~G~~l~~ 355 (461)
++|++||||||++|+++| ++|+++++++++++||.+|+.++|++++||+++ |+|||++||+ +||||+||..|++
T Consensus 184 igGAlKNViAIA~Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG~~~~T~~gLsGlGDLilTCts~~SRN~r~G~~lg~ 263 (329)
T COG0240 184 IGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVALGAKPETFMGLSGLGDLILTCTSPLSRNRRFGLLLGQ 263 (329)
T ss_pred HHHHHHHHHHHHHHHHHHhhcChhHHHHHHHhHHHHHHHHHHHhCCCcchhcccccccceeEecCCCccccHHHHHHHhC
Confidence 999999999999999997 799999999999999999999999999999998 9999999996 6999999999999
Q ss_pred CCChhhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHHHHHHHHHhccc
Q 012547 356 GRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEALRDET 435 (461)
Q Consensus 356 g~~~~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~~~~~~~~~~~~l~~~~ 435 (461)
|++.++++..+ ++++||+.|++.++++++++|+ + +||+++||+||+++++|.+++..+|.|+.
T Consensus 264 g~~~~e~l~~~--g~vvEGv~t~k~v~~la~~~~i--------------~-mPI~~~Vy~vl~~~~~~~~~~~~L~~r~~ 326 (329)
T COG0240 264 GLSLDEALEEI--GQVVEGVRTAKAVYELAKKLGI--------------E-MPITEAVYRVLYEGLDPKEAIEELMGRDL 326 (329)
T ss_pred CCCHHHHHHhc--CCeeecHHHHHHHHHHHHHcCC--------------C-CCHHHHHHHHHhCCCCHHHHHHHHhcccc
Confidence 99887665433 5689999999999999999995 7 89999999999999999999999999999
Q ss_pred CCC
Q 012547 436 MND 438 (461)
Q Consensus 436 ~~~ 438 (461)
|.|
T Consensus 327 k~E 329 (329)
T COG0240 327 KPE 329 (329)
T ss_pred CCC
Confidence 876
No 2
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-65 Score=526.63 Aligned_cols=346 Identities=26% Similarity=0.388 Sum_probs=297.0
Q ss_pred HHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCC--CCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhc
Q 012547 33 RRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRR 110 (461)
Q Consensus 33 ~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~--~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n 110 (461)
|.++-+..-++|||+|||+|+||+|+|..|+++ |... -+|+|.+|.|+++. +.+++.+.|++.+ +|
T Consensus 1 ~~~~~~~~~~~~ki~ViGaG~wGtAlA~~l~~n-~~~~~~~~~~V~lw~~~~~~----~~~~~~~~in~~~-------~N 68 (365)
T PTZ00345 1 RSLFQKLRCGPLKVSVIGSGNWGSAISKVVGEN-TQRNYIFHNEVRMWVLEEIV----EGEKLSDIINTKH-------EN 68 (365)
T ss_pred CcchhhcccCCCeEEEECCCHHHHHHHHHHHhc-CCcccCCCCeEEEEEecccc----cchHHHHHHHhcC-------CC
Confidence 446667777889999999999999999999998 5100 01699999999862 1112333455544 58
Q ss_pred ccccchhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHH--HhhccC
Q 012547 111 CAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR--YWKERI 188 (461)
Q Consensus 111 ~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~--~l~~~~ 188 (461)
++|+|+++ || .++.+++|+++++++||+||++||+++++++++++.+ ++.+
T Consensus 69 ~~ylp~~~-------Lp------------------~ni~~tsdl~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~-- 121 (365)
T PTZ00345 69 VKYLPGIK-------LP------------------DNIVAVSDLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKK-- 121 (365)
T ss_pred cccCCCCc-------CC------------------CceEEecCHHHHHhcCCEEEEEcChHHHHHHHHHhccccccCC--
Confidence 89998763 32 2688999999999999999999999999999999998 7765
Q ss_pred CCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEE-eCChhHHHHHHHHhcCC
Q 012547 189 TVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRP 267 (461)
Q Consensus 189 ~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~-~~~~~~~~~l~~ll~~~ 267 (461)
++++||++||++.++. +..++|+++++.++. ++++++|||||.|++++.|+.+++ +.+.+.++.++++|+++
T Consensus 122 -~~~iIS~aKGIe~~t~---~~~~~sevi~e~l~~---~~~~LsGPs~A~Eva~~~pt~~vias~~~~~a~~~~~lf~~~ 194 (365)
T PTZ00345 122 -HARAISLTKGIIVENG---KPVLCSDVIEEELGI---PCCALSGANVANDVAREEFSEATIGCEDKDDALIWQRLFDRP 194 (365)
T ss_pred -CCEEEEEeCCcccCCC---CcccHHHHHHHHhCC---CeEEEECCCHHHHHHcCCCcEEEEEeCCHHHHHHHHHHhCCC
Confidence 5689999999998731 237899999999863 578999999999999999998876 56788899999999999
Q ss_pred CceEEecCChHHHHHHHHHHHHHHHHHhhccC---ccchHHHHHHHHHHHHHHHHHHhCC--CchhhccC-hhhhhhhhc
Q 012547 268 HFTVWDNGDLVTHEVMGGLKNVYAIGAALTNE---SATSKSVYFAHCTSEMVFITHLLAE--EPEKLAGP-LLADTYVTL 341 (461)
Q Consensus 268 g~~v~~s~Di~gve~~galKNv~Ai~~Gi~~g---~~n~~a~l~~~~~~Em~~l~~a~G~--~~~t~~g~-glgDl~~T~ 341 (461)
+|++|.++|++|+|+||++||+|||++|+++| ++|+++++++++++||.+|++++|+ +++||+|+ |+|||++||
T Consensus 195 ~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~G~N~kaalitrgl~Em~~l~~a~g~~~~~~T~~glaG~GDLi~Tc 274 (365)
T PTZ00345 195 YFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLGTNTKSAIIRIGLEEMKLFGKIFFPNVMDETFFESCGLADLITTC 274 (365)
T ss_pred cEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHhCCCCCccchhccchHhHhhhcc
Confidence 99999999999999999999999999999997 6999999999999999999999975 89999997 999999999
Q ss_pred cccchhHHHHHHhcC---CChhhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHh
Q 012547 342 LKGRNAWYGQELAKG---RLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILI 418 (461)
Q Consensus 342 ~~sRN~~~G~~l~~g---~~~~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~ 418 (461)
+.||||+||++|++| ++.+++++.+.+++++||+.|++.+|++++++++. .+ +||+++||+||+
T Consensus 275 ~sSRN~~~G~~l~~g~~~~~~~~~~~~~~~~~~vEG~~t~~~v~~l~~~~~i~------------~~-~Pi~~~vy~il~ 341 (365)
T PTZ00345 275 LGGRNVRCAAEFAKRNGKKSWEEIEAELLNGQKLQGTVTLKEVYEVLESHDLK------------KE-FPLFTVTYKIAF 341 (365)
T ss_pred cCCCcHHHHHHHhccCCCCCHHHHHHHhhCCcEechHHHHHHHHHHHHHcCCC------------CC-CCHHHHHHHHHh
Confidence 889999999999986 47777776654567899999999999999999952 15 899999999999
Q ss_pred cCCCHHHHHHHHHhcccCC
Q 012547 419 MRESPIQAILEALRDETMN 437 (461)
Q Consensus 419 ~~~~~~~~~~~~l~~~~~~ 437 (461)
++.+|.+++..+|.++.+.
T Consensus 342 ~~~~~~~~~~~l~~r~~~~ 360 (365)
T PTZ00345 342 EGADPSSLIDVLSTNELRP 360 (365)
T ss_pred CCCCHHHHHHHHHcCCCcc
Confidence 9999999999999877764
No 3
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=100.00 E-value=1.1e-62 Score=501.49 Aligned_cols=326 Identities=24% Similarity=0.344 Sum_probs=282.4
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCC---eeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDK---VLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~---~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
||+|||+|+||+++|..|+++ |...+. |+|++|.|+++.- .+.+.+.+++.+ +|++|+|+++
T Consensus 1 kI~VIGaG~wGtALA~~la~n-g~~~~~~~~~~V~lw~~~~~~~----~~~~~~~in~~~-------~n~~ylpgi~--- 65 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN-ARALPELFEESVRMWVFEEEIE----GRNLTEIINTTH-------ENVKYLPGIK--- 65 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc-CCcccccCCceEEEEEeccccC----CHHHHHHHHhcC-------CCccccCCCc---
Confidence 699999999999999999998 521111 7999999954210 112334455544 5888888652
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
+| .++++++|+++++++||+||++||+++++++++++.+++++ ++++|+++||++
T Consensus 66 ----Lp------------------~~i~at~dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~---~~~iVs~tKGie 120 (342)
T TIGR03376 66 ----LP------------------ANLVAVPDLVEAAKGADILVFVIPHQFLEGICKQLKGHVKP---NARAISCIKGLE 120 (342)
T ss_pred ----CC------------------CCeEEECCHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCC---CCEEEEEeCCcc
Confidence 22 26889999999999999999999999999999999999876 689999999998
Q ss_pred cccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEE-eCC----hhHHHHHHHHhcCCCceEEecCC
Q 012547 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGA----EKWRKPLAKFLRRPHFTVWDNGD 276 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~-~~~----~~~~~~l~~ll~~~g~~v~~s~D 276 (461)
.+. ++.+++|+++++.++ .++++++|||||.|++++.|+.+++ +.+ .+.++.++++|++++|++|.++|
T Consensus 121 ~~~---~~~~~~se~i~e~l~---~~~~~lsGP~~A~Eva~~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~D 194 (342)
T TIGR03376 121 VSK---DGVKLLSDIIEEELG---IPCGVLSGANLANEVAKEKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDD 194 (342)
T ss_pred cCC---CcCccHHHHHHHHhC---CCeEEeeCcchHHHHHcCCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCC
Confidence 762 257899999999985 3578999999999999999998876 556 68899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhccC---ccchHHHHHHHHHHHHHHHHHHhCCCch--hhccC-hhhhhhhhccccchhHHH
Q 012547 277 LVTHEVMGGLKNVYAIGAALTNE---SATSKSVYFAHCTSEMVFITHLLAEEPE--KLAGP-LLADTYVTLLKGRNAWYG 350 (461)
Q Consensus 277 i~gve~~galKNv~Ai~~Gi~~g---~~n~~a~l~~~~~~Em~~l~~a~G~~~~--t~~g~-glgDl~~T~~~sRN~~~G 350 (461)
++|+|+||++||+|||++||++| ++|+++++++++++||.+|++++|++++ ||+|+ |+|||++||+.||||+||
T Consensus 195 v~GvEl~galKNv~AIa~Gi~~Gl~~g~N~~aalitrgl~Em~~l~~~~g~~~~~~T~~gl~G~GDL~~Tc~ssRN~~~G 274 (342)
T TIGR03376 195 VAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAAVMRRGLLEMIKFARMFFPTGEVTFTFESCGVADLITTCLGGRNFKVG 274 (342)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccchhhhhhheeecCccHHHH
Confidence 99999999999999999999997 6999999999999999999999999887 99997 999999999889999999
Q ss_pred HHHhc-CCChhhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHHHHHHH
Q 012547 351 QELAK-GRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILE 429 (461)
Q Consensus 351 ~~l~~-g~~~~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~~~~~~~~~~~ 429 (461)
++|++ |++.+++.+.+..++++||+.|++.+++++++++++ +++||++++|+||+++++|.+++..
T Consensus 275 ~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~~~~~l~~~~~i~-------------~~~Pi~~~vy~il~~~~~~~~~~~~ 341 (342)
T TIGR03376 275 RAFAKTGKSLEELEKELLNGQSLQGVATAKEVHELLKNKNKD-------------DEFPLFEAVYQILYEGLPPKKLPEC 341 (342)
T ss_pred HHHHhcCCCHHHHHHhhcCCcEEeeHHHHHHHHHHHHHcCCC-------------cCCCHHHHHHHHHhCCCCHHHHHhh
Confidence 99999 999988876644567899999999999999999973 3389999999999999999988754
No 4
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=100.00 E-value=1.2e-59 Score=464.23 Aligned_cols=360 Identities=34% Similarity=0.448 Sum_probs=314.2
Q ss_pred hHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCC-CCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhh
Q 012547 25 LEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYL-RDKVLIRIWRRPGRSVDRATAEHLFEVINSREDV 103 (461)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~-~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~ 103 (461)
.++++++.++.++..+.++.||+|||+|+||+++|+.++.+.+.+ .-..+|.+|.+.++.-.. .++|.++||++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~--~~~L~eiIN~~h-- 78 (372)
T KOG2711|consen 3 DEIKLDESIRNLGKAERDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGE--AEKLTEIINSRH-- 78 (372)
T ss_pred cccccchhhhccCchhcCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCCh--hHHHHHHhcccc--
Confidence 467899999999999999999999999999999999999874211 002589999998864432 479999999987
Q ss_pred HHhhhhcccccchhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHH
Q 012547 104 LRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY 183 (461)
Q Consensus 104 ~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~ 183 (461)
+|++|+|+++ +| .++.+++|+.+++++||++|.++|++++..++++|..+
T Consensus 79 -----eN~KYlpg~~-------lP------------------~NvvAv~dl~ea~~dADilvf~vPhQf~~~ic~~l~g~ 128 (372)
T KOG2711|consen 79 -----ENVKYLPGIK-------LP------------------ENVVAVPDLVEAAKDADILVFVVPHQFIPRICEQLKGY 128 (372)
T ss_pred -----ccccccCCcc-------CC------------------CCeEecchHHHHhccCCEEEEeCChhhHHHHHHHHhcc
Confidence 5999999863 32 26889999999999999999999999999999999999
Q ss_pred hhccCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHH--HHHH
Q 012547 184 WKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWR--KPLA 261 (461)
Q Consensus 184 l~~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~--~~l~ 261 (461)
+++ +...||++||++...+ .++..++|++|.+.+|.| +.+++|||+|.|+++.+++.++++..++.. ..+.
T Consensus 129 vk~---~~~aISL~KG~e~~~~-g~~i~liS~iI~~~lgI~---~~vL~GaNiA~EVa~~~f~e~tIg~~~~~~~~~~l~ 201 (372)
T KOG2711|consen 129 VKP---GATAISLIKGVEVGEE-GPGIRLISQIIHRALGIP---CSVLMGANIASEVANEKFCETTIGYKDKKEAGILLK 201 (372)
T ss_pred cCC---CCeEEEeecceeccCC-CCceeehHHHHHHHhCCC---ceeecCCchHHHHHhccccceeEeccchhhcchHHH
Confidence 998 7889999999997632 225789999999999965 569999999999999999998887653333 3599
Q ss_pred HHhcCCCceEEecCChHHHHHHHHHHHHHHHHHhhccC---ccchHHHHHHHHHHHHHHHHHHh-CC-CchhhccC-hhh
Q 012547 262 KFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAALTNE---SATSKSVYFAHCTSEMVFITHLL-AE-EPEKLAGP-LLA 335 (461)
Q Consensus 262 ~ll~~~g~~v~~s~Di~gve~~galKNv~Ai~~Gi~~g---~~n~~a~l~~~~~~Em~~l~~a~-G~-~~~t~~g~-glg 335 (461)
++|++++|+++..+|+.++|+||+||||+|+|+|+++| ++|++++++++++.||+.|++.+ .. .++||.+. |++
T Consensus 202 ~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NTkaAi~r~Gl~Em~~F~~~f~p~~~~~t~~escGva 281 (372)
T KOG2711|consen 202 KLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNNTKAAIIRLGLLEMIKFATHFYPGSKPTTFFESCGVA 281 (372)
T ss_pred HHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCCcchHHHHHHhhHHHHHHHHHHhCCCCCcceeeccccHH
Confidence 99999999999999999999999999999999999997 68999999999999999999886 45 67788886 999
Q ss_pred hhhhhccccchhHHHHHHhcC-CChhhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHH
Q 012547 336 DTYVTLLKGRNAWYGQELAKG-RLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLY 414 (461)
Q Consensus 336 Dl~~T~~~sRN~~~G~~l~~g-~~~~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly 414 (461)
||++||+.+|||+++++++++ ++.++.++++-+++.+||+.|++.||+++++.|+ ++++|++++||
T Consensus 282 DlitTC~gGRNr~~aeafaktgk~~~~~E~ell~Gq~~QG~~Ta~~Vy~~L~~~~l-------------~~kfPlftaVy 348 (372)
T KOG2711|consen 282 DLITTCYGGRNRKVAEAFAKTGKSLEELEKELLNGQKLQGPATAKEVYELLQKKGL-------------VEKFPLFTAVY 348 (372)
T ss_pred HHHHHHhcCccHHHHHHHHHcCCCHHHHHHHhhCCCcccCcHHHHHHHHHHHHcCh-------------hhhCcHHHHHH
Confidence 999999999999999999987 7777777777777899999999999999999997 56699999999
Q ss_pred HHHhcCCCHHHHHHHHHhcccCCCc
Q 012547 415 KILIMRESPIQAILEALRDETMNDP 439 (461)
Q Consensus 415 ~il~~~~~~~~~~~~~l~~~~~~~~ 439 (461)
+|++++. |.+++.++|+.++..+|
T Consensus 349 kI~~~~~-~~~~lle~l~~~~~~~~ 372 (372)
T KOG2711|consen 349 KICYERL-PPQALLECLRNHPEDDP 372 (372)
T ss_pred HHHhcCC-CHHHHHHHHhcccccCC
Confidence 9999988 89999999998876543
No 5
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2e-58 Score=471.49 Aligned_cols=323 Identities=25% Similarity=0.388 Sum_probs=285.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccc-hhhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLK-YVEAR 120 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~-~~~~~ 120 (461)
.+|||+|||+|+||+++|..|+++ | +|.+|.|++++++.+++++ .|..|++ ..
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~~-g------~v~l~~~~~~~~~~i~~~~----------------~~~~~l~~~~--- 59 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICARR-G------PTLQWVRSAETADDINDNH----------------RNSRYLGNDV--- 59 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC-C------CEEEEeCCHHHHHHHHhcC----------------CCcccCCCCc---
Confidence 458999999999999999999998 5 5889999988777644322 2445554 21
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
+++ .++.+++|++++++++|+||++||+++++++++++.+++++ ++++|+++||+
T Consensus 60 ----~l~------------------~~i~~t~d~~~a~~~aDlVilavps~~~~~vl~~i~~~l~~---~~~vIsl~kGi 114 (341)
T PRK12439 60 ----VLS------------------DTLRATTDFAEAANCADVVVMGVPSHGFRGVLTELAKELRP---WVPVVSLVKGL 114 (341)
T ss_pred ----ccC------------------CCeEEECCHHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCC---CCEEEEEEeCC
Confidence 121 25778899998899999999999999999999999999886 67899999999
Q ss_pred ccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEE-eCChhHHHHHHHHhcCCCceEEecCChHH
Q 012547 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~-~~~~~~~~~l~~ll~~~g~~v~~s~Di~g 279 (461)
+.. +.+++++++++.++. .++++++||+++.|++.|.++.+++ +.+++..+.++++|++++|+++.++|++|
T Consensus 115 ~~~-----t~~~~se~i~~~l~~--~~~~~l~GP~~a~ev~~g~~t~~via~~~~~~~~~v~~lf~~~~~~v~~s~Di~g 187 (341)
T PRK12439 115 EQG-----TNMRMSQIIEEVLPG--HPAGILAGPNIAREVAEGYAAAAVLAMPDQHLATRLSPLFRTRRFRVYTTDDVVG 187 (341)
T ss_pred cCC-----CCCcHHHHHHHHcCC--CCeEEEECCCHHHHHHcCCCeEEEEEeCCHHHHHHHHHHhCCCCEEEEEcCchHH
Confidence 987 578999999998862 4678899999999999999887765 55677889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccC---ccchHHHHHHHHHHHHHHHHHHhCCCchhhccC-hhhhhhhhcc--ccchhHHHHHH
Q 012547 280 HEVMGGLKNVYAIGAALTNE---SATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLL--KGRNAWYGQEL 353 (461)
Q Consensus 280 ve~~galKNv~Ai~~Gi~~g---~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~-glgDl~~T~~--~sRN~~~G~~l 353 (461)
+||+|++||++||++|++++ ++|+++++++++++||.++++++|++++||+|+ |+|||++||+ .||||+||++|
T Consensus 188 ve~~~alkNv~aia~G~~~g~~~g~n~~aali~~~~~E~~~~~~a~G~~~~t~~gl~G~GDl~~Tc~s~~sRN~~~G~~l 267 (341)
T PRK12439 188 VEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTKLGVAMGGNPETFAGLAGMGDLIVTCTSQRSRNRHVGEQL 267 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhCCCcccccccchhhhhhhhccCCCCccHHHHHHH
Confidence 99999999999999999986 689999999999999999999999999999997 9999999996 59999999999
Q ss_pred hcCCChhhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHHHHHHHHHhc
Q 012547 354 AKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEALRD 433 (461)
Q Consensus 354 ~~g~~~~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~~~~~~~~~~~~l~~ 433 (461)
++|++++++.+.+ ++++||+.|++.++++++++|+ + +||++++|+||+++++|.+++..+|.+
T Consensus 268 ~~g~~~~~~~~~~--~~~~EG~~~~~~~~~~~~~~~~--------------~-~Pi~~~~~~il~~~~~~~~~~~~l~~~ 330 (341)
T PRK12439 268 GAGKPIDEIIASM--NQVAEGVKAASVVMEFADEYGL--------------N-MPIAREVDAVINHGSTVEQAYRGLIAE 330 (341)
T ss_pred HCCCCHHHHHHhc--CCEEehHHHHHHHHHHHHHhCC--------------C-CCHHHHHHHHHhCCCCHHHHHHHHhcC
Confidence 9999998877544 4679999999999999999995 6 899999999999999999999999999
Q ss_pred ccCCCc
Q 012547 434 ETMNDP 439 (461)
Q Consensus 434 ~~~~~~ 439 (461)
+.+.|.
T Consensus 331 ~~~~e~ 336 (341)
T PRK12439 331 VPGHEV 336 (341)
T ss_pred CCCccc
Confidence 999883
No 6
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.9e-49 Score=402.20 Aligned_cols=314 Identities=21% Similarity=0.333 Sum_probs=269.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|+||+++|..|+++ | ++|++|+|+++.++.++.+ + +|..|+++.
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~-g-----~~V~l~~r~~~~~~~i~~~---------~-------~~~~~~~~~------ 52 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSK-K-----ISVNLWGRNHTTFESINTK---------R-------KNLKYLPTC------ 52 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHC-C-----CeEEEEecCHHHHHHHHHc---------C-------CCcccCCCC------
Confidence 6899999999999999999999 8 9999999998877654322 1 234445432
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHh-cCCCEEEEcCCchhHHHHHHHHHH-HhhccCCCCEEEEEeecCc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVINGLPSTETKEVFEEISR-YWKERITVPVIISLAKGVE 201 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av-~~aDiIIiaVps~~~~~vl~~i~~-~l~~~~~~~iIIs~tkGi~ 201 (461)
.++ .++.+++|+++++ .++|+||++||+++++++++++.+ ++.+ ++.+|+++||++
T Consensus 53 -~~~------------------~~i~~~~~~~~~~~~~~Dliiiavks~~~~~~l~~l~~~~l~~---~~~vv~~~nGi~ 110 (326)
T PRK14620 53 -HLP------------------DNISVKSAIDEVLSDNATCIILAVPTQQLRTICQQLQDCHLKK---NTPILICSKGIE 110 (326)
T ss_pred -cCC------------------CCeEEeCCHHHHHhCCCCEEEEEeCHHHHHHHHHHHHHhcCCC---CCEEEEEEcCee
Confidence 111 1577888988876 589999999999999999999998 8776 678999999998
Q ss_pred cccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEE-eCChhHHHHHHHHhcCCCceEEecCChHHH
Q 012547 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTH 280 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~-~~~~~~~~~l~~ll~~~g~~v~~s~Di~gv 280 (461)
.. +..++++.+.+.++. .++.+++||+++.+++.+.++.+.+ +.+.+..+.++++|++.+|+++.++|++|+
T Consensus 111 ~~-----~~~~~~~~l~~~~~~--~~~~~~~Gp~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Di~g~ 183 (326)
T PRK14620 111 KS-----SLKFPSEIVNEILPN--NPIAILSGPSFAKEIAEKLPCSIVLAGQNETLGSSLISKLSNENLKIIYSQDIIGV 183 (326)
T ss_pred CC-----CCccHHHHHHHHcCC--CceEeecCCcHHHHHHcCCCcEEEEecCCHHHHHHHHHHHCCCCeEEEecCcchhh
Confidence 76 457789999998863 5677899999999999887765554 455667899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccC---ccchHHHHHHHHHHHHHHHHHHhCC--CchhhccC-hhhhhhhhcc--ccchhHHHHH
Q 012547 281 EVMGGLKNVYAIGAALTNE---SATSKSVYFAHCTSEMVFITHLLAE--EPEKLAGP-LLADTYVTLL--KGRNAWYGQE 352 (461)
Q Consensus 281 e~~galKNv~Ai~~Gi~~g---~~n~~a~l~~~~~~Em~~l~~a~G~--~~~t~~g~-glgDl~~T~~--~sRN~~~G~~ 352 (461)
+|+|++||++|+++|+.+| ++|.+++++++++.||..+++++|+ +++++.++ |+||+++||. .||||+||+.
T Consensus 184 ~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~gl~g~gdl~~t~~~~~~rN~~~G~~ 263 (326)
T PRK14620 184 QIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAKNGSIDLNTLIGPSCLGDLILTCTTLHSRNMSFGFK 263 (326)
T ss_pred hhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHhCCCCCcchhhccchhhhhhheecCCCCCcHHHHHH
Confidence 9999999999999999986 4688889999999999999999998 78999997 9999999995 8999999999
Q ss_pred HhcCCChhhHhhhhcCCC-ccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHHHHHHHHH
Q 012547 353 LAKGRLTLDLGDSIKGKG-MIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEAL 431 (461)
Q Consensus 353 l~~g~~~~~~~~~~~~~~-~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~~~~~~~~~~~~l 431 (461)
|++|...+|+.+ +++ ++||+++++.++++++++|+ + +|++++||++++++.+|.++++.+|
T Consensus 264 l~~g~~~~d~~~---~~~~~vegi~~~~~v~~~a~~~~i--------------~-~P~~~~l~~~~~~~~~~~~~~~~~~ 325 (326)
T PRK14620 264 IGNGFNINQILS---EGKSVIEGFSTVKPLISLAKKLNI--------------E-LPICESIYNLLYENISLEKTISVIL 325 (326)
T ss_pred HHCCCCHHHHHH---hCCCEeecHHHHHHHHHHHHHhCC--------------C-CCHHHHHHHHHhCCCCHHHHHHHHh
Confidence 999988777653 333 49999999999999999995 6 8999999999999999999998887
Q ss_pred h
Q 012547 432 R 432 (461)
Q Consensus 432 ~ 432 (461)
.
T Consensus 326 ~ 326 (326)
T PRK14620 326 S 326 (326)
T ss_pred C
Confidence 3
No 7
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=4.3e-44 Score=360.89 Aligned_cols=297 Identities=25% Similarity=0.406 Sum_probs=263.8
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
..|||+|||+|+||+++|..|+++ | ++|++|+|++.
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~-G-----~~V~~~~r~~~-------------------------------------- 38 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASAN-G-----HRVRVWSRRSG-------------------------------------- 38 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHC-C-----CEEEEEeCCCC--------------------------------------
Confidence 358999999999999999999999 8 99999998742
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHH-hhccCCCCEEEEEeecC
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY-WKERITVPVIISLAKGV 200 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~-l~~~~~~~iIIs~tkGi 200 (461)
.+++++++++|+||+++|+.+++++++++.++ +.+ ++++|+++||+
T Consensus 39 ------------------------------~~~~~~~~~advvi~~vp~~~~~~v~~~l~~~~~~~---~~ivi~~s~gi 85 (308)
T PRK14619 39 ------------------------------LSLAAVLADADVIVSAVSMKGVRPVAEQVQALNLPP---ETIIVTATKGL 85 (308)
T ss_pred ------------------------------CCHHHHHhcCCEEEEECChHHHHHHHHHHHHhcCCC---CcEEEEeCCcc
Confidence 12345567899999999999999999999875 555 68999999999
Q ss_pred ccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEE-eCChhHHHHHHHHhcCCCceEEecCChHH
Q 012547 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~-~~~~~~~~~l~~ll~~~g~~v~~s~Di~g 279 (461)
++. +...+++.+.+.+. ..++.+++||+++.++..+.++.+++ +++.+..+.++++|+..+++++.++|++|
T Consensus 86 ~~~-----~~~~~s~~~~~~~~--~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~~~v~~ll~~~~~~~~~~~d~~G 158 (308)
T PRK14619 86 DPE-----TTRTPSQIWQAAFP--NHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQIFSSERFRVYTNSDPLG 158 (308)
T ss_pred cCC-----CCcCHHHHHHHHcC--CCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHHHHHHHHhCCCcEEEEecCCchh
Confidence 987 46788898887765 24677889999999999887766654 66788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccC---ccchHHHHHHHHHHHHHHHHHHhCCCchhhccC-hhhhhhhhcc--ccchhHHHHHH
Q 012547 280 HEVMGGLKNVYAIGAALTNE---SATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLL--KGRNAWYGQEL 353 (461)
Q Consensus 280 ve~~galKNv~Ai~~Gi~~g---~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~-glgDl~~T~~--~sRN~~~G~~l 353 (461)
++|++++||++||++|+.++ +.|.+++++.+++.|+..+++++|.++++++++ |+||+++||. .|||+++|+.+
T Consensus 159 ~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~~~~g~gd~~~t~~~~~~rn~~~g~~l 238 (308)
T PRK14619 159 TELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGAQTETFYGLSGLGDLLATCTSPLSRNYQVGYGL 238 (308)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCCccccccccchhhhheeecCCCCccHHHHHHH
Confidence 99999999999999998875 578999999999999999999999999999987 9999999995 59999999999
Q ss_pred hcCCChhhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHHHHHHHHHhc
Q 012547 354 AKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEALRD 433 (461)
Q Consensus 354 ~~g~~~~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~~~~~~~~~~~~l~~ 433 (461)
++|++.+++.+++ .+++||+.+++.++++++++|+ + +|+++++|++++++.+|.+.+..+|.+
T Consensus 239 ~~g~~~~~~~~~~--~~~~eG~~~~~~~~~~~~~~~~--------------~-~Pl~~~v~~i~~~~~~~~~~~~~l~~~ 301 (308)
T PRK14619 239 AQGKSLEQILAEL--EGTAEGVNTANVLVQLAQQQNI--------------A-VPITEQVYRLLQGEITPQQALEELMER 301 (308)
T ss_pred HCCCCHHHHHHhc--CCEeecHHHHHHHHHHHHHcCC--------------C-CCHHHHHHHHHcCCCCHHHHHHHHHcC
Confidence 9999988877654 3589999999999999999995 6 899999999999999999999999999
Q ss_pred ccCCCc
Q 012547 434 ETMNDP 439 (461)
Q Consensus 434 ~~~~~~ 439 (461)
..+.||
T Consensus 302 ~~~~~~ 307 (308)
T PRK14619 302 DLKPEF 307 (308)
T ss_pred CCcccc
Confidence 888775
No 8
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2e-43 Score=358.61 Aligned_cols=319 Identities=24% Similarity=0.347 Sum_probs=264.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
++|||+|||+|+||+++|..|+++ | ++|++|+|++++++.++..+ .|..++++.
T Consensus 3 ~~m~I~iIG~G~mG~~ia~~L~~~-G-----~~V~~~~r~~~~~~~i~~~~----------------~~~~~~~g~---- 56 (328)
T PRK14618 3 HGMRVAVLGAGAWGTALAVLAASK-G-----VPVRLWARRPEFAAALAAER----------------ENREYLPGV---- 56 (328)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHHHHhC----------------cccccCCCC----
Confidence 468999999999999999999999 8 99999999987766543211 123343321
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
.++ .++..+++++++++++|+||+|||+++++++++.+. + +.++|+++||+.
T Consensus 57 ---~~~------------------~~~~~~~~~~e~~~~aD~Vi~~v~~~~~~~v~~~l~----~---~~~vi~~~~Gi~ 108 (328)
T PRK14618 57 ---ALP------------------AELYPTADPEEALAGADFAVVAVPSKALRETLAGLP----R---ALGYVSCAKGLA 108 (328)
T ss_pred ---cCC------------------CCeEEeCCHHHHHcCCCEEEEECchHHHHHHHHhcC----c---CCEEEEEeeccc
Confidence 110 136677889888899999999999999888886543 3 578999999998
Q ss_pred cccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEE-eCChhHHHHHHHHhcCCCceEEecCChHHH
Q 012547 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTH 280 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~-~~~~~~~~~l~~ll~~~g~~v~~s~Di~gv 280 (461)
+... ....+++.+.+... ..+.++.||+++.+++.+.++.++. +++++..+.++++|+..+++++.++|++|+
T Consensus 109 ~~~~---~~~~l~~~l~~~~~---~~~~~~~gP~~a~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~~~~v~~~~di~g~ 182 (328)
T PRK14618 109 PDGG---RLSELARVLEFLTQ---ARVAVLSGPNHAEEIARFLPAATVVASPEPGLARRVQAAFSGPSFRVYTSRDRVGV 182 (328)
T ss_pred cCCC---ccchHHHHHHHhcC---CCeEEEECccHHHHHHcCCCeEEEEEeCCHHHHHHHHHHhCCCcEEEEecCCccch
Confidence 6521 24456666654222 2457899999999999998776654 667888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccC---ccchHHHHHHHHHHHHHHHHHHhCCCchhhccC-hhhhhhhhcc--ccchhHHHHHHh
Q 012547 281 EVMGGLKNVYAIGAALTNE---SATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLL--KGRNAWYGQELA 354 (461)
Q Consensus 281 e~~galKNv~Ai~~Gi~~g---~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~-glgDl~~T~~--~sRN~~~G~~l~ 354 (461)
+|++++||++|+++|+..+ +.|.+++++.++++||..+++++|.++++++++ |+|||++||. .+||+++|+.++
T Consensus 183 ~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~~~~~~~~~~~~gDl~~t~~s~~~rn~~~g~~~~ 262 (328)
T PRK14618 183 ELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGAEEATFYGLSGLGDLIATATSPHSRNRAAGEAIV 262 (328)
T ss_pred hhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhCCCccchhcCcchhheeeEeccCCCccHHHHHHHh
Confidence 9999999999999998875 588899999999999999999999999999996 9999999984 899999999999
Q ss_pred cCCChhhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHHHHHHHHHhcc
Q 012547 355 KGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEALRDE 434 (461)
Q Consensus 355 ~g~~~~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~~~~~~~~~~~~l~~~ 434 (461)
+|++.++.. .+..+.||+.+++.++++++++++ + +|+++++|++|+++.+|.++++.+|.++
T Consensus 263 ~g~~~~~~~---~~~~~~~g~kd~~~~~~la~~~~~--------------~-~Pl~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (328)
T PRK14618 263 RGVDREHLE---AGGKVVEGLYTVKALDAWAKAHGH--------------D-LPIVEAVARVARGGWDPLAGLRSLMGRE 324 (328)
T ss_pred CCCCHHHHH---HcCCEEecHHHHHHHHHHHHHhCC--------------C-CCHHHHHHHHHhCCCCHHHHHHHHhcCC
Confidence 997765432 234568999999999999999995 6 8999999999999999999999999988
Q ss_pred cCCC
Q 012547 435 TMND 438 (461)
Q Consensus 435 ~~~~ 438 (461)
.+.|
T Consensus 325 ~~~~ 328 (328)
T PRK14618 325 AKEE 328 (328)
T ss_pred CCCC
Confidence 8754
No 9
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=5.8e-39 Score=323.81 Aligned_cols=318 Identities=25% Similarity=0.403 Sum_probs=267.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
||||+|||+|+||+++|..|+++ | ++|++|+|+++.++.++.++ .+..+.++.
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~-g-----~~V~~~~r~~~~~~~~~~~~----------------~~~~~~~~~----- 53 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARN-G-----HDVTLWARDPEQAAEINADR----------------ENPRYLPGI----- 53 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEECCHHHHHHHHHcC----------------cccccCCCC-----
Confidence 47999999999999999999999 8 99999999987776533221 011222211
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
.++ .++.+++|++++++++|+||+|||+++++++++++.+++.+ ++++|+++||+++
T Consensus 54 --~~~------------------~~~~~~~~~~~~~~~~D~vi~~v~~~~~~~v~~~l~~~~~~---~~~vi~~~ngv~~ 110 (325)
T PRK00094 54 --KLP------------------DNLRATTDLAEALADADLILVAVPSQALREVLKQLKPLLPP---DAPIVWATKGIEP 110 (325)
T ss_pred --cCC------------------CCeEEeCCHHHHHhCCCEEEEeCCHHHHHHHHHHHHhhcCC---CCEEEEEeecccC
Confidence 110 14567788888889999999999999999999999998876 7899999999998
Q ss_pred ccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEE-eCChhHHHHHHHHhcCCCceEEecCChHHHH
Q 012547 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHE 281 (461)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~-~~~~~~~~~l~~ll~~~g~~v~~s~Di~gve 281 (461)
+ +...+++.+++.++.. ...+++.||+++.++..+.++.+.. +.+.+..+.++++|+..+++++.++|+.|.+
T Consensus 111 ~-----~~~~~~~~l~~~~~~~-~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~ 184 (325)
T PRK00094 111 G-----TGKLLSEVLEEELPDL-APIAVLSGPSFAKEVARGLPTAVVIASTDEELAERVQELFHSPYFRVYTNTDVIGVE 184 (325)
T ss_pred C-----CCCcHHHHHHHHcCCC-CceEEEECccHHHHHHcCCCcEEEEEeCCHHHHHHHHHHhCCCCEEEEecCCcchhh
Confidence 6 4577888888877531 2467899999999988887766554 5567888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccC---ccchHHHHHHHHHHHHHHHHHHhCCCchhhccC-hhhhhhhhcc--ccchhHHHHHHhc
Q 012547 282 VMGGLKNVYAIGAALTNE---SATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLL--KGRNAWYGQELAK 355 (461)
Q Consensus 282 ~~galKNv~Ai~~Gi~~g---~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~-glgDl~~T~~--~sRN~~~G~~l~~ 355 (461)
|++++||++++++|...+ +.|...+++..+++|+..+++++|.+++++.+. +.||++.+|. .+||+.+|..+++
T Consensus 185 ~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~d~~~~~~~~~~~~~~~~~~s~~~~~~~~g~~~~~ 264 (325)
T PRK00094 185 LGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALGANPETFLGLAGLGDLVLTCTSPLSRNRRFGLALGQ 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCChhhhhcccHhhhhhhhccCCCCccHHHHHHHHC
Confidence 999999999999988764 578788899999999999999999999999885 8999999995 5999999999999
Q ss_pred CCChhhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHHHHHHHHHhc
Q 012547 356 GRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEALRD 433 (461)
Q Consensus 356 g~~~~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~~~~~~~~~~~~l~~ 433 (461)
|.+..++.+.. +.+.||...++.++++++++|+ + +|+++++|++++++++|.+.++.++.|
T Consensus 265 ~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~~~--------------~-~P~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (325)
T PRK00094 265 GKSLEEALAEI--GMVAEGVRTAKAVYELAKKLGV--------------E-MPITEAVYAVLYEGKDPREAVEDLMGR 325 (325)
T ss_pred CCCHHHHHHHc--CCEeecHHHHHHHHHHHHHhCC--------------C-CCHHHHHHHHHcCCCCHHHHHHHHhcC
Confidence 98765554432 2579999999999999999995 7 899999999999999999999998864
No 10
>PF07479 NAD_Gly3P_dh_C: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; InterPro: IPR006109 NAD-dependent glycerol-3-phosphate dehydrogenase (1.1.1.8 from EC) (GPD) catalyzes the reversible reduction of dihydroxyacetone phosphate to glycerol-3-phosphate. It is a cytoplasmic protein, active as a homodimer [], each monomer containing an N-terminal NAD binding site []. In insects, it acts in conjunction with a mitochondrial alpha-glycerophosphate oxidase in the alpha-glycerophosphate cycle, which is essential for the production of energy used in insect flight [].; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0005975 carbohydrate metabolic process, 0055114 oxidation-reduction process; PDB: 2PLA_A 3K96_A 1N1G_A 1M67_A 1JDJ_A 1N1E_B 1EVZ_A 1EVY_A 1M66_A 1TXG_B ....
Probab=100.00 E-value=1.3e-32 Score=249.54 Aligned_cols=141 Identities=33% Similarity=0.524 Sum_probs=124.8
Q ss_pred CChHHHHHHHHHHHHHHHHHhhccC---ccchHHHHHHHHHHHHHHHHHHhCCCch-hhccC-hhhhhhhhcc--ccchh
Q 012547 275 GDLVTHEVMGGLKNVYAIGAALTNE---SATSKSVYFAHCTSEMVFITHLLAEEPE-KLAGP-LLADTYVTLL--KGRNA 347 (461)
Q Consensus 275 ~Di~gve~~galKNv~Ai~~Gi~~g---~~n~~a~l~~~~~~Em~~l~~a~G~~~~-t~~g~-glgDl~~T~~--~sRN~ 347 (461)
+|++|+|+||++||+|||++|++++ ++|+++++++++++||.+|++++|++++ ||+++ |+|||++||+ .||||
T Consensus 1 ~Dv~GvEl~galKNi~Aia~Gi~~g~~~g~N~~aal~t~g~~Em~~l~~~~gg~~~~t~~~laGlGDLi~T~~s~~sRN~ 80 (149)
T PF07479_consen 1 SDVVGVELCGALKNIYAIAAGIADGLGLGDNTKAALITRGLAEMSRLAKALGGDPENTFFGLAGLGDLILTCTSDKSRNR 80 (149)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTSSCCGGGCSTTTHHHHHHHHHHTTSHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHhCCCCcccccccchHhhhHHHhcCCCCCcH
Confidence 6999999999999999999999986 6999999999999999999999999999 99997 9999999996 59999
Q ss_pred HHHHHHhcC-CChhhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHHHH
Q 012547 348 WYGQELAKG-RLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQA 426 (461)
Q Consensus 348 ~~G~~l~~g-~~~~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~~~~~~~~ 426 (461)
+||+.+++| ++.+++.+.+.+++++||+.+++.++++++++++ + +|+++++|+||+++.+|.++
T Consensus 81 ~~G~~l~~g~~~~~~~~~~~~~~~~vEG~~t~~~v~~l~~~~~i--------------~-~Pl~~~vy~Il~~~~~~~~~ 145 (149)
T PF07479_consen 81 RFGKALGKGGKSIEEAEKEMLGGQTVEGVRTAKIVYELAEKYNI--------------E-FPLFTAVYKILYENESPEEA 145 (149)
T ss_dssp HHHHHHHHTTS-HHHHHHHHTTTS--HHHHHHHHHHHHHHHCT---------------G-SHHHHHHHHHHHS---HHHH
T ss_pred HHHHHHHccCCCHHHHHHhhhhcchHHHHHHHHHHHHHHHHhCC--------------C-ChHHHHHHHHHcCcCCHHHH
Confidence 999999999 8888888777667899999999999999999995 6 89999999999999999998
Q ss_pred HHHH
Q 012547 427 ILEA 430 (461)
Q Consensus 427 ~~~~ 430 (461)
+.++
T Consensus 146 i~~l 149 (149)
T PF07479_consen 146 IEEL 149 (149)
T ss_dssp HHHH
T ss_pred HHcC
Confidence 8764
No 11
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.94 E-value=2.1e-26 Score=210.59 Aligned_cols=154 Identities=32% Similarity=0.561 Sum_probs=123.5
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccCC
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~ 124 (461)
||+|||+|+||+++|..|+.+ | ++|++|+|+++.++.++.+ + +|+.|+++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-g-----~~V~l~~~~~~~~~~i~~~---------~-------~n~~~~~~~------- 51 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-G-----HEVTLWGRDEEQIEEINET---------R-------QNPKYLPGI------- 51 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-T-----EEEEEETSCHHHHHHHHHH---------T-------SETTTSTTS-------
T ss_pred CEEEECcCHHHHHHHHHHHHc-C-----CEEEEEeccHHHHHHHHHh---------C-------CCCCCCCCc-------
Confidence 799999999999999999999 8 9999999999877764432 2 467787764
Q ss_pred ccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCcccc
Q 012547 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAEL 204 (461)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~~ 204 (461)
+++ .++.+++|+++++++||+||++||+++++++++++.+++++ ++++|+++||++..
T Consensus 52 ~l~------------------~~i~~t~dl~~a~~~ad~IiiavPs~~~~~~~~~l~~~l~~---~~~ii~~~KG~~~~- 109 (157)
T PF01210_consen 52 KLP------------------ENIKATTDLEEALEDADIIIIAVPSQAHREVLEQLAPYLKK---GQIIISATKGFEPG- 109 (157)
T ss_dssp BEE------------------TTEEEESSHHHHHTT-SEEEE-S-GGGHHHHHHHHTTTSHT---T-EEEETS-SEETT-
T ss_pred ccC------------------cccccccCHHHHhCcccEEEecccHHHHHHHHHHHhhccCC---CCEEEEecCCcccC-
Confidence 232 26889999999999999999999999999999999999987 78999999999766
Q ss_pred ccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEE-eCChh
Q 012547 205 EAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEK 255 (461)
Q Consensus 205 ~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~-~~~~~ 255 (461)
+..++++++++.++.+ ++++++||+||.|++.+.++.+++ +.+.+
T Consensus 110 ----~~~~~~~~i~~~~~~~--~~~~lsGP~~A~Ei~~~~pt~~~~as~~~~ 155 (157)
T PF01210_consen 110 ----TLLLLSEVIEEILPIP--RIAVLSGPSFAEEIAEGKPTAVVIASKNEE 155 (157)
T ss_dssp ----EEEEHHHHHHHHHSSC--GEEEEESS--HHHHHTT--EEEEEEESSHH
T ss_pred ----CCccHHHHHHHHhhhc--ceEEeeCccHHHHHHcCCCeEEEEEecccc
Confidence 6789999999999853 489999999999999999998876 44443
No 12
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.92 E-value=7.6e-24 Score=211.62 Aligned_cols=282 Identities=18% Similarity=0.161 Sum_probs=190.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|+||+++|..|+++ | ++|++|+|+++.++.++.+++ .+.. ++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~-g-----~~V~~~~r~~~~~~~~~~~g~-------------------~~~~-----~~ 50 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA-G-----HDVTLVARRGAHLDALNENGL-------------------RLED-----GE 50 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEECChHHHHHHHHcCC-------------------cccC-----Cc
Confidence 7999999999999999999998 8 999999998776655332211 0000 00
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
.. .++..+++++++ +++|+||+|||+++++++++++.+++.+ ++.||+++||+...
T Consensus 51 ~~--------------------~~~~~~~~~~~~-~~~d~vila~k~~~~~~~~~~l~~~l~~---~~~iv~~~nG~~~~ 106 (304)
T PRK06522 51 IT--------------------VPVLAADDPAEL-GPQDLVILAVKAYQLPAALPSLAPLLGP---DTPVLFLQNGVGHL 106 (304)
T ss_pred ee--------------------ecccCCCChhHc-CCCCEEEEecccccHHHHHHHHhhhcCC---CCEEEEecCCCCcH
Confidence 00 022344566654 8999999999999999999999998876 68899999999765
Q ss_pred cccccccCCHHHHHHhHhCCCC------CcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEecCCh
Q 012547 204 LEAVPRIITPTQMINRATGVPI------ENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (461)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~~~------~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di 277 (461)
+.+.+.++... ...+.+.+|+.+.+.+.+...+.......+..+.+.++|+..++.++.++|+
T Consensus 107 -----------~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~~ig~~~~~~~~~~~l~~~l~~~~~~~~~~~di 175 (304)
T PRK06522 107 -----------EELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRLKIGEPDGESAAAEALADLLNAAGLDVEWSPDI 175 (304)
T ss_pred -----------HHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCEEEeCCCCCcHHHHHHHHHHHhcCCCCCCChHH
Confidence 45666554211 0123477888887776654322222222344778999999999999999999
Q ss_pred HHHHHHHHHHHHHHH----HHhhccC---ccchHHHHHHHHHHHHHHHHHHhCCCchhhccChhhhhhhhccccchhHHH
Q 012547 278 VTHEVMGGLKNVYAI----GAALTNE---SATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTLLKGRNAWYG 350 (461)
Q Consensus 278 ~gve~~galKNv~Ai----~~Gi~~g---~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~glgDl~~T~~~sRN~~~G 350 (461)
.+.+|.++++|+... .+|...+ .++....++...+.|+..++++.|.+...- .+.+.+... .
T Consensus 176 ~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~---~~~~~~~~~--------~ 244 (304)
T PRK06522 176 RTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAEGVHLSVE---EVREYVRQV--------I 244 (304)
T ss_pred HHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHcCCCCChH---HHHHHHHHH--------h
Confidence 999999999997432 2333322 122334688899999999999999875321 011111111 0
Q ss_pred HHHhcCCChhhHhhhhcCCCc-cchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012547 351 QELAKGRLTLDLGDSIKGKGM-IQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 419 (461)
Q Consensus 351 ~~l~~g~~~~~~~~~~~~~~~-vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~ 419 (461)
....... ++..+|..+++++ +|-++. .++++++++|+ + +|.++++|+++..
T Consensus 245 ~~~~~~~-sSm~~D~~~gr~tEid~i~G--~~v~~a~~~gv--------------~-~P~~~~l~~~~~~ 296 (304)
T PRK06522 245 QKTAANT-SSMLQDLEAGRPTEIDAIVG--YVLRRGRKHGI--------------P-TPLNDALYGLLKA 296 (304)
T ss_pred hccCCCC-chHHHHHHcCCCcccchhcc--HHHHHHHHcCC--------------C-CcHHHHHHHHHHH
Confidence 0111111 1223333344444 666666 79999999995 7 8999999999975
No 13
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.90 E-value=4.3e-22 Score=199.42 Aligned_cols=282 Identities=19% Similarity=0.191 Sum_probs=183.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|+||+++|..|+++ | ++|++|+| +++++.++++++ ...... ++
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~-g-----~~V~~~~r-~~~~~~~~~~g~-------------------~~~~~~---~~ 51 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA-G-----RDVTFLVR-PKRAKALRERGL-------------------VIRSDH---GD 51 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC-C-----CceEEEec-HHHHHHHHhCCe-------------------EEEeCC---Ce
Confidence 7999999999999999999999 8 99999999 666554332111 011000 00
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
..+ +...++|.+++..++|+||+|||+++++++++++.+++.+ +++||+++||++..
T Consensus 52 ~~~--------------------~~~~~~~~~~~~~~~d~vilavk~~~~~~~~~~l~~~~~~---~~~ii~~~nG~~~~ 108 (305)
T PRK12921 52 AVV--------------------PGPVITDPEELTGPFDLVILAVKAYQLDAAIPDLKPLVGE---DTVIIPLQNGIGQL 108 (305)
T ss_pred EEe--------------------cceeecCHHHccCCCCEEEEEecccCHHHHHHHHHhhcCC---CCEEEEeeCCCChH
Confidence 000 2234567777668999999999999999999999998876 68899999999765
Q ss_pred cccccccCCHHHHHHhHhCCCCCc------EEEEeCcchhHhhhccCceEEEEe-CChhHHHHHHHHhcCCCceEEecCC
Q 012547 204 LEAVPRIITPTQMINRATGVPIEN------ILYLGGPNIASEIYNKEYANARIC-GAEKWRKPLAKFLRRPHFTVWDNGD 276 (461)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~~~~~------v~vlsGPn~a~ev~~g~~~~~~~~-~~~~~~~~l~~ll~~~g~~v~~s~D 276 (461)
+.+.+.++....- .+.+.+|+.......+...+.... ...+..+.+.++|...++.+..++|
T Consensus 109 -----------~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~d 177 (305)
T PRK12921 109 -----------EQLEPYFGRERVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQRSERTRAVRDALAGARLEVVLSEN 177 (305)
T ss_pred -----------HHHHHhCCcccEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCcCHHHHHHHHHHHhCCCCceecHH
Confidence 4566666531100 122234444333222211111111 1235667899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHH-Hhhcc---C---ccchHHHHHHHHHHHHHHHHHHhCCCchhhccChhhhhhhh-cc-ccchh
Q 012547 277 LVTHEVMGGLKNVYAIG-AALTN---E---SATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVT-LL-KGRNA 347 (461)
Q Consensus 277 i~gve~~galKNv~Ai~-~Gi~~---g---~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~glgDl~~T-~~-~sRN~ 347 (461)
+...+|.+.+.|+.-.. +.+.+ + .+.....++...+.|+..++++.|.+..... +-+.+.. +. ...|+
T Consensus 178 i~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~---~~~~~~~~~~~~~~~~ 254 (305)
T PRK12921 178 IRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAVARAEGAPLRDDV---VEEIVKIFAGAPGDMK 254 (305)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHHHHHcCCCCChhH---HHHHHHHHhccCCCCC
Confidence 99999999999964222 22221 1 1223346888999999999999999753210 1111110 00 11111
Q ss_pred HHHHHHhcCCChhhHhhhhcCCCc-cchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012547 348 WYGQELAKGRLTLDLGDSIKGKGM-IQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 419 (461)
Q Consensus 348 ~~G~~l~~g~~~~~~~~~~~~~~~-vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~ 419 (461)
++..+|..+++++ +|-++. .++++++++|+ + +|.++++|.++..
T Consensus 255 -----------sSm~~D~~~gr~tEid~i~G--~vv~~a~~~gv--------------~-~P~~~~l~~~~~~ 299 (305)
T PRK12921 255 -----------TSMLRDMEKGRPLEIDHLQG--VLLRRARAHGI--------------P-TPILDTVYALLKA 299 (305)
T ss_pred -----------cHHHHHHHcCCcccHHHHHH--HHHHHHHHhCC--------------C-CcHHHHHHHHHHH
Confidence 1223333344544 666666 79999999995 7 8999999999875
No 14
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=99.90 E-value=5.7e-22 Score=200.41 Aligned_cols=283 Identities=17% Similarity=0.165 Sum_probs=188.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.+|||+|||+|+||+.+|..|+++ | ++|++|.|+.. +.++.+++ .+....
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~-g-----~~V~~~~r~~~--~~~~~~g~-------------------~~~~~~--- 53 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARA-G-----FDVHFLLRSDY--EAVRENGL-------------------QVDSVH--- 53 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEEeCCH--HHHHhCCe-------------------EEEeCC---
Confidence 348999999999999999999999 8 99999999862 32221110 111000
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
++..+ .++.++++++ ....+|+||+|||+.++.++++.+.+++.+ ++.+++++||++
T Consensus 54 ~~~~~-------------------~~~~~~~~~~-~~~~~D~vilavK~~~~~~~~~~l~~~~~~---~~~iv~lqNG~~ 110 (313)
T PRK06249 54 GDFHL-------------------PPVQAYRSAE-DMPPCDWVLVGLKTTANALLAPLIPQVAAP---DAKVLLLQNGLG 110 (313)
T ss_pred CCeee-------------------cCceEEcchh-hcCCCCEEEEEecCCChHhHHHHHhhhcCC---CCEEEEecCCCC
Confidence 00000 1234455554 367899999999999999999999999887 688999999998
Q ss_pred cccccccccCCHHHHHHhHhCCCCC-c-----EEEEeCcchhHhhhccCceEEEEeC-C-----hhHHHHHHHHhcCCCc
Q 012547 202 AELEAVPRIITPTQMINRATGVPIE-N-----ILYLGGPNIASEIYNKEYANARICG-A-----EKWRKPLAKFLRRPHF 269 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~-~-----v~vlsGPn~a~ev~~g~~~~~~~~~-~-----~~~~~~l~~ll~~~g~ 269 (461)
.. +.+.+.++.... . .+...+|+.....+.+...+....+ + .+..+.+.++|+..++
T Consensus 111 ~~-----------e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~ 179 (313)
T PRK06249 111 VE-----------EQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYHSGPAADDGITARVEEGAALFRAAGI 179 (313)
T ss_pred cH-----------HHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEecCCCCcccchHHHHHHHHHHHHHhCCC
Confidence 76 567777753210 0 1234577765554444433222222 2 3556788999999999
Q ss_pred eEEecCChHHHHHHHHHHHHH----HHHHhhccC----ccchHHHHHHHHHHHHHHHHHHhCCCchhhccChhhhhhhhc
Q 012547 270 TVWDNGDLVTHEVMGGLKNVY----AIGAALTNE----SATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTL 341 (461)
Q Consensus 270 ~v~~s~Di~gve~~galKNv~----Ai~~Gi~~g----~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~glgDl~~T~ 341 (461)
.+..++|+....|.+.+.|+. +..++...+ .+..+ .++...+.|+..++++.|.+.... -+-..+..+
T Consensus 180 ~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~-~l~~~~~~E~~~va~a~Gi~~~~~---~~~~~~~~~ 255 (313)
T PRK06249 180 DSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSR-ALIRALMAEVIQGAAACGHTLPEG---YADHMLAVT 255 (313)
T ss_pred CceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHH-HHHHHHHHHHHHHHHhcCCCCChh---HHHHHHHHh
Confidence 999999999999999888762 333333222 12233 688899999999999999863221 011111111
Q ss_pred cccchhHHHHHHhcCCChhhHhhhhcCCCc-cchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012547 342 LKGRNAWYGQELAKGRLTLDLGDSIKGKGM-IQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 419 (461)
Q Consensus 342 ~~sRN~~~G~~l~~g~~~~~~~~~~~~~~~-vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~ 419 (461)
....... ++..+|..++++| +|.+++ .++++++++|+ + +|+++++|.+++.
T Consensus 256 ---------~~~~~~~-sSM~qD~~~gr~tEid~i~G--~vv~~a~~~Gi--------------~-~P~~~~l~~~l~~ 307 (313)
T PRK06249 256 ---------ERMPDYR-PSMYHDFEEGRPLELEAIYA--NPLAAARAAGC--------------A-MPRVEMLYQALEF 307 (313)
T ss_pred ---------hcCCCCC-ChHHHHHHCCCcccHHHHhh--HHHHHHHHhCC--------------C-CcHHHHHHHHHHH
Confidence 0111111 2223343455555 888877 99999999995 7 8999999999875
No 15
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.90 E-value=5.7e-22 Score=201.96 Aligned_cols=294 Identities=18% Similarity=0.156 Sum_probs=190.4
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
+|||+|||+|+||+++|..|+++ | ++|++|+|++. .+.++.+++ ......+.
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~-G-----~~V~~~~r~~~-~~~~~~~g~----------------~~~~~~~~----- 53 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAA-G-----ADVTLIGRARI-GDELRAHGL----------------TLTDYRGR----- 53 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhc-C-----CcEEEEecHHH-HHHHHhcCc----------------eeecCCCc-----
Confidence 58999999999999999999999 8 99999999752 233221110 00000000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
..... ...+.++++. +++.++|+||+|||+.++.++++++.+++.+ +++|++++||+..
T Consensus 54 ~~~~~-----------------~~~~~~~~~~-~~~~~~D~vil~vk~~~~~~~~~~l~~~~~~---~~iii~~~nG~~~ 112 (341)
T PRK08229 54 DVRVP-----------------PSAIAFSTDP-AALATADLVLVTVKSAATADAAAALAGHARP---GAVVVSFQNGVRN 112 (341)
T ss_pred ceecc-----------------cceeEeccCh-hhccCCCEEEEEecCcchHHHHHHHHhhCCC---CCEEEEeCCCCCc
Confidence 00000 0134556676 4578999999999999999999999998876 6889999999876
Q ss_pred ccccccccCCHHHHHHhHhCCCCC-----cE-EEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEecCC
Q 012547 203 ELEAVPRIITPTQMINRATGVPIE-----NI-LYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276 (461)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~-----~v-~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~D 276 (461)
. +.+++.++.... .+ ++..||+.+.....+.. .+. ..+..+.++++|+..+++++.++|
T Consensus 113 ~-----------~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~g~l---~~~-~~~~~~~~~~~l~~~g~~~~~~~d 177 (341)
T PRK08229 113 A-----------DVLRAALPGATVLAGMVPFNVISRGPGAFHQGTSGAL---AIE-ASPALRPFAAAFARAGLPLVTHED 177 (341)
T ss_pred H-----------HHHHHhCCCCcEEEEEEEEEEEecCCceEEecCCCce---Eec-CCchHHHHHHHHHhcCCCceecch
Confidence 4 456666543110 11 24668887765444432 222 234468899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhccC-------ccchHHHHHHHHHHHHHHHHHHhCCCchhhccC---hhhhhh-hhccccc
Q 012547 277 LVTHEVMGGLKNVYAIGAALTNE-------SATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP---LLADTY-VTLLKGR 345 (461)
Q Consensus 277 i~gve~~galKNv~Ai~~Gi~~g-------~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~---glgDl~-~T~~~sR 345 (461)
+.+.+|.++++|++...+.+.+. .+..+ .++..++.|...++++.|.++..+..+ ++..++ ..+...+
T Consensus 178 i~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~-~~~~~~~~E~~~va~a~Gi~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (341)
T PRK08229 178 MRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYR-RCLALAQREALRVLKAAGIRPARLTPLPPAWIPRLLRLPDPLFR 256 (341)
T ss_pred hHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHH-HHHHHHHHHHHHHHHHcCCCccccCCCChhhhhhhhcCChHHHH
Confidence 99999999999975444444332 12233 577789999999999999987654331 111110 0000000
Q ss_pred hhHHHHHHhcCC--ChhhHhhhhcCCCc-cchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012547 346 NAWYGQELAKGR--LTLDLGDSIKGKGM-IQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 419 (461)
Q Consensus 346 N~~~G~~l~~g~--~~~~~~~~~~~~~~-vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~ 419 (461)
......+.... ..+..+|...+++| +|.++. .++++++++|+ + +|+++++|+++..
T Consensus 257 -~~~~~~~~~~~~~~~Sm~~D~~~~r~tEi~~i~G--~i~~~a~~~gv--------------~-~P~~~~~~~~~~~ 315 (341)
T PRK08229 257 -RLAGRMLAIDPLARSSMSDDLAAGRATEIDWING--EIVRLAGRLGA--------------P-APVNARLCALVHE 315 (341)
T ss_pred -HHHHHhhccCCccCchHHHHHHcCCcchHHHHhh--HHHHHHHHcCC--------------C-CcHHHHHHHHHHH
Confidence 00001111111 12223333345555 777777 99999999995 6 8999999998853
No 16
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=99.87 E-value=5.5e-21 Score=192.94 Aligned_cols=278 Identities=21% Similarity=0.261 Sum_probs=192.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|+|+|+||+.+|..|++. | ++|+++.|++. ++++++++| .+.... +.
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~-g-----~~V~~~~R~~~-~~~l~~~GL-------------------~i~~~~---~~ 51 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA-G-----HDVTLLVRSRR-LEALKKKGL-------------------RIEDEG---GN 51 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC-C-----CeEEEEecHHH-HHHHHhCCe-------------------EEecCC---Cc
Confidence 7999999999999999999999 7 89999999985 666544332 111100 00
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
. ......+++. +....+|+||++||+.+++++++.+.+++++ ++.|++++||+++.
T Consensus 52 --~------------------~~~~~~~~~~-~~~~~~Dlviv~vKa~q~~~al~~l~~~~~~---~t~vl~lqNG~g~~ 107 (307)
T COG1893 52 --F------------------TTPVVAATDA-EALGPADLVIVTVKAYQLEEALPSLAPLLGP---NTVVLFLQNGLGHE 107 (307)
T ss_pred --c------------------ccccccccCh-hhcCCCCEEEEEeccccHHHHHHHhhhcCCC---CcEEEEEeCCCcHH
Confidence 0 0012223333 4467999999999999999999999999998 78999999999987
Q ss_pred cccccccCCHHHHHHhHhCCC------CCcEEEEeCcchhHhhhccCceEEEEe-CChhHHHHHHHHhcCCCceEEecCC
Q 012547 204 LEAVPRIITPTQMINRATGVP------IENILYLGGPNIASEIYNKEYANARIC-GAEKWRKPLAKFLRRPHFTVWDNGD 276 (461)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~~------~~~v~vlsGPn~a~ev~~g~~~~~~~~-~~~~~~~~l~~ll~~~g~~v~~s~D 276 (461)
|.+.+.++.. ....+.+.||+.....+.|...+.... ..++..+.+.++|+..++.+.+++|
T Consensus 108 -----------e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~~~~~~i~~~~~~a~~~~~~~~d 176 (307)
T COG1893 108 -----------EELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRDELVKALAELFKEAGLEVELHPD 176 (307)
T ss_pred -----------HHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCchHHHHHHHHHHHhCCCCeEEcHH
Confidence 5566665532 111256677887777665655444443 3457789999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHH--Hhhcc---C--ccch-HHHHHHHHHHHHHHHHHHhCCCch-hhccChhhhhhhhcc-c-cc
Q 012547 277 LVTHEVMGGLKNVYAIG--AALTN---E--SATS-KSVYFAHCTSEMVFITHLLAEEPE-KLAGPLLADTYVTLL-K-GR 345 (461)
Q Consensus 277 i~gve~~galKNv~Ai~--~Gi~~---g--~~n~-~a~l~~~~~~Em~~l~~a~G~~~~-t~~g~glgDl~~T~~-~-sR 345 (461)
+....|.+++.|. ++. +.+.+ + ..+. -..++...+.|...++.+.|.... ... -.+...+. . ..
T Consensus 177 i~~~~w~Kl~~N~-~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~~g~~~~~~~~----~~v~~~~~~~~~~ 251 (307)
T COG1893 177 ILAAIWRKLVVNA-AINPLTALLDCNNGELLENPEARALIRALVAEVVAVARAEGVELPEEVV----ERVLAVIRATDAE 251 (307)
T ss_pred HHHHHHHHHHhhh-ccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHhccCCCCHHHH----HHHHHHHHhcccc
Confidence 9999999999888 333 23322 2 1331 225788899999999999995321 111 11111110 1 23
Q ss_pred hhH-HHHHHhcCCChhhHhhhhcCCCc-cchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012547 346 NAW-YGQELAKGRLTLDLGDSIKGKGM-IQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 419 (461)
Q Consensus 346 N~~-~G~~l~~g~~~~~~~~~~~~~~~-vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~ 419 (461)
|++ +-+++. ++++| +|-+++ +++++++++|+ + +|.+++||++++.
T Consensus 252 ~~sSM~qDl~------------~gr~tEid~i~G--~vv~~a~~~gi--------------~-~P~~~~L~~lvk~ 298 (307)
T COG1893 252 NYSSMLQDLE------------KGRPTEIDAING--AVVRLAKKHGL--------------A-TPVNDTLYALLKA 298 (307)
T ss_pred cCchHHHHHH------------cCCcccHHHHhh--HHHHHHHHhCC--------------C-CcHHHHHHHHHHH
Confidence 332 222333 33344 677766 99999999995 6 9999999999975
No 17
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=99.87 E-value=2.7e-21 Score=195.10 Aligned_cols=276 Identities=13% Similarity=0.047 Sum_probs=183.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhh-hHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAE-HLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~-~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.|||+|+|+|++|+.+|..|++. | ++|++++|+.+++++++++ ++ .+...
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~-G-----~~V~lv~r~~~~~~~i~~~~Gl-------------------~i~~~---- 52 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARA-G-----LPVRLILRDRQRLAAYQQAGGL-------------------TLVEQ---- 52 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhC-C-----CCeEEEEechHHHHHHhhcCCe-------------------EEeeC----
Confidence 58999999999999999999999 8 9999999988777764432 11 11100
Q ss_pred cC-CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 122 GD-RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 122 ~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
++ ..+ ++...+ .+ ....+|+||+|||++++.++++++.+++.+ ++.||+++||+
T Consensus 53 g~~~~~--------------------~~~~~~-~~-~~~~~D~viv~vK~~~~~~al~~l~~~l~~---~t~vv~lQNGv 107 (305)
T PRK05708 53 GQASLY--------------------AIPAET-AD-AAEPIHRLLLACKAYDAEPAVASLAHRLAP---GAELLLLQNGL 107 (305)
T ss_pred Ccceee--------------------ccCCCC-cc-cccccCEEEEECCHHhHHHHHHHHHhhCCC---CCEEEEEeCCC
Confidence 00 000 111111 11 235789999999999999999999999987 78999999999
Q ss_pred ccccccccccCCHHHHHHhHhCCCCCcE--------EEEeCcchhHhhhccCceEEEEe-CChhHHHHHHHHhcCCCceE
Q 012547 201 EAELEAVPRIITPTQMINRATGVPIENI--------LYLGGPNIASEIYNKEYANARIC-GAEKWRKPLAKFLRRPHFTV 271 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~v--------~vlsGPn~a~ev~~g~~~~~~~~-~~~~~~~~l~~ll~~~g~~v 271 (461)
... +.+++.++.. ++ +...+|+...+.+.+. +.++ .+.+..+.+.++|...++.+
T Consensus 108 ~~~-----------e~l~~~~~~~--~v~~g~~~~ga~~~~pg~v~~~~~g~---~~~G~~~~~~~~~l~~~l~~ag~~~ 171 (305)
T PRK05708 108 GSQ-----------DAVAARVPHA--RCIFASSTEGAFRDGDWRVVFAGHGF---TWLGDPRNPTAPAWLDDLREAGIPH 171 (305)
T ss_pred CCH-----------HHHHHhCCCC--cEEEEEeeeceecCCCCEEEEeceEE---EEEcCCCCcchHHHHHHHHhcCCCC
Confidence 886 5677777532 21 1223555544433332 1232 23345678899999999999
Q ss_pred EecCChHHHHHHHHHHHHH-HHHHhhc---cC--ccchHHHHHHHHHHHHHHHHHHhCCCchhhccChhhhhhhhccccc
Q 012547 272 WDNGDLVTHEVMGGLKNVY-AIGAALT---NE--SATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTLLKGR 345 (461)
Q Consensus 272 ~~s~Di~gve~~galKNv~-Ai~~Gi~---~g--~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~glgDl~~T~~~sR 345 (461)
.+++|+.+..|.+.+.|+. ...+.+. .+ ..+ . .++...+.|+..++++.|...... ++...
T Consensus 172 ~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~-~-~~~~~l~~E~~~va~a~G~~~~~~------~~~~~----- 238 (305)
T PRK05708 172 EWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEH-A-QEVAALCAELSELLRRCGQPAAAA------NLHEE----- 238 (305)
T ss_pred ccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcC-H-HHHHHHHHHHHHHHHHcCCCccHH------HHHHH-----
Confidence 9999999999999998873 2223333 22 122 1 467788999999999999853211 11100
Q ss_pred hhHHHHHHhcCCChhhHhhhhcCCCc-cchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012547 346 NAWYGQELAKGRLTLDLGDSIKGKGM-IQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 419 (461)
Q Consensus 346 N~~~G~~l~~g~~~~~~~~~~~~~~~-vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~ 419 (461)
..+........+ ++..+|..+++++ +|-+++ .++++++++|+ + +|.++++|.+++.
T Consensus 239 ~~~~~~~~~~~~-sSM~qD~~~gR~tEid~i~G--~vvr~a~~~Gv--------------~-~P~~~~l~~~v~~ 295 (305)
T PRK05708 239 VQRVIQATAANY-SSMYQDVRAGRRTEISYLLG--YACRAADRHGL--------------P-LPRLQHLQQRLVA 295 (305)
T ss_pred HHHHHHhccCCC-cHHHHHHHcCCceeehhhhh--HHHHHHHHcCC--------------C-CchHHHHHHHHHH
Confidence 001111111112 2233444455555 788777 99999999995 7 8999999998864
No 18
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=99.84 E-value=1e-19 Score=180.65 Aligned_cols=272 Identities=17% Similarity=0.188 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccCCccchhhhh
Q 012547 53 AWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEIL 132 (461)
Q Consensus 53 amG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~~l~~~~~~ 132 (461)
++|+.+|..|+++ | ++|++|+|+ ++++.++++++ .+.... ++...
T Consensus 1 aiG~~~a~~L~~~-G-----~~V~l~~r~-~~~~~i~~~Gl-------------------~i~~~~---~~~~~------ 45 (293)
T TIGR00745 1 AVGSLYGAYLARA-G-----HDVTLLARG-EQLEALNQEGL-------------------RIVSLG---GEFQF------ 45 (293)
T ss_pred CchHHHHHHHHhC-C-----CcEEEEecH-HHHHHHHHCCc-------------------EEEecC---CcEEE------
Confidence 5899999999999 8 999999997 55555433221 111100 00000
Q ss_pred hhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccccccccccCC
Q 012547 133 KDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIIT 212 (461)
Q Consensus 133 ~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~~~~~~~~~~ 212 (461)
.++.+++|+++ ..++|+||+|||+++++++++.+.+++.+ +++||+++||++..
T Consensus 46 -------------~~~~~~~~~~~-~~~~D~iiv~vKs~~~~~~l~~l~~~l~~---~~~iv~~qNG~g~~--------- 99 (293)
T TIGR00745 46 -------------RPVSAATSPEE-LPPADLVIITVKAYQTEEAAALLLPLIGK---NTKVLFLQNGLGHE--------- 99 (293)
T ss_pred -------------cccccccChhh-cCCCCEEEEeccchhHHHHHHHhHhhcCC---CCEEEEccCCCCCH---------
Confidence 02345566665 67899999999999999999999999987 78999999999876
Q ss_pred HHHHHHhHhCCCCC------cEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEecCChHHHHHHHHH
Q 012547 213 PTQMINRATGVPIE------NILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGL 286 (461)
Q Consensus 213 ~se~i~~~lg~~~~------~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~gve~~gal 286 (461)
+.+.+.++.+.. ..+.+.||+...+.+.+...+....+..+..+.+.++|...++.+..++|+.+.+|.+.+
T Consensus 100 --~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~ 177 (293)
T TIGR00745 100 --ERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGENEAVEALAELLNEAGIPAELHGDILAAIWKKLL 177 (293)
T ss_pred --HHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCchHHHHHHHHHHHhCCCCCEecchHHHHHHHHHh
Confidence 556666653210 123456777666555443222222122255688999999999999999999999999999
Q ss_pred HHH-HHHHHhhccC-----ccch-HHHHHHHHHHHHHHHHHHhCCCchhhccChhhhhhhh-c-cccchh-HHHHHHhcC
Q 012547 287 KNV-YAIGAALTNE-----SATS-KSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVT-L-LKGRNA-WYGQELAKG 356 (461)
Q Consensus 287 KNv-~Ai~~Gi~~g-----~~n~-~a~l~~~~~~Em~~l~~a~G~~~~t~~g~glgDl~~T-~-~~sRN~-~~G~~l~~g 356 (461)
.|+ +...+++.+. ..+. ...++...+.|+..++++.|.+..... +-+.+.. + ..+.|+ ++-+++.+
T Consensus 178 ~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~---~~~~~~~~~~~~~~~~sSm~~D~~~- 253 (293)
T TIGR00745 178 VNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEGVDLPDDE---VEELVRAVIRMTAENTSSMLQDLLR- 253 (293)
T ss_pred heechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCCCCChHHHHHHc-
Confidence 997 4445555542 1222 236888999999999999998654311 1111111 1 122222 22233333
Q ss_pred CChhhHhhhhcCCCc-cchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012547 357 RLTLDLGDSIKGKGM-IQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 419 (461)
Q Consensus 357 ~~~~~~~~~~~~~~~-vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~ 419 (461)
++++ +|-++. .++++++++|+ + +|.++.+|++++.
T Consensus 254 -----------gr~tEid~i~G--~~v~~a~~~gv--------------~-~P~~~~l~~~~~~ 289 (293)
T TIGR00745 254 -----------GRRTEIDAING--AVVRLAEKLGI--------------D-APVNRTLYALLKA 289 (293)
T ss_pred -----------CCcchHHHhcc--HHHHHHHHcCC--------------C-CChHHHHHHHHHH
Confidence 3333 555555 89999999995 7 8999999999875
No 19
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.79 E-value=7.3e-18 Score=176.69 Aligned_cols=224 Identities=17% Similarity=0.169 Sum_probs=160.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|+||..+|..|+++ | |+|++|++++++++.++ .+ .++.+.+++.
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~-G-----~~V~~~d~~~~~v~~l~---------~g--------~~~~~e~~l~----- 52 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADL-G-----HEVTGVDIDQEKVDKLN---------KG--------KSPIYEPGLD----- 52 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhc-C-----CeEEEEECCHHHHHHhh---------cC--------CCCCCCCCHH-----
Confidence 6899999999999999999999 8 99999999998776533 22 1333444332
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch----------hHHHHHHHHHHHhhccCCCCEE
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------ETKEVFEEISRYWKERITVPVI 193 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~----------~~~~vl~~i~~~l~~~~~~~iI 193 (461)
+++.+.... .++.++++++++++++|+||+|||+. ++.++++.+.+.+++ ++++
T Consensus 53 ------~~~~~~~~~-------g~l~~~~~~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~---g~lv 116 (411)
T TIGR03026 53 ------ELLAKALAA-------GRLRATTDYEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRK---GATV 116 (411)
T ss_pred ------HHHHHhhhc-------CCeEEECCHHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCC---CCEE
Confidence 122111100 13678889988899999999999965 488888999888876 6666
Q ss_pred EEEeecCccccccccccCCH-HHHHHhHhCCC-CCcEEEEeCcchhHhhhc----cCceEEEEeCChhHHHHHHHHhcCC
Q 012547 194 ISLAKGVEAELEAVPRIITP-TQMINRATGVP-IENILYLGGPNIASEIYN----KEYANARICGAEKWRKPLAKFLRRP 267 (461)
Q Consensus 194 Is~tkGi~~~~~~~~~~~~~-se~i~~~lg~~-~~~v~vlsGPn~a~ev~~----g~~~~~~~~~~~~~~~~l~~ll~~~ 267 (461)
|.. .++.+.+ ...+ .+++++..|.. ...+.+.++|.++.+... ..+..++++.+++..+.++++|+..
T Consensus 117 i~~-STv~pgt-----~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~ 190 (411)
T TIGR03026 117 VLE-STVPPGT-----TEEVVKPILERASGLKLGEDFYLAYNPEFLREGNAVHDLLNPDRIVGGETEEAGEAVAELYAPI 190 (411)
T ss_pred EEe-CcCCCCc-----hHHHHHHHHHhhcCCCCCCCceEEECCCcCCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHh
Confidence 654 4777662 2233 23334423321 234568899999887553 2344556677888889999999877
Q ss_pred C-ceEEecCChHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhcc
Q 012547 268 H-FTVWDNGDLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAG 331 (461)
Q Consensus 268 g-~~v~~s~Di~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g 331 (461)
+ ..++...|+...|+.+++.|.+. +.....++|+..+|+++|.|+.++.+
T Consensus 191 ~~~~~~~~~~~~~Ae~~Kl~~N~~~--------------a~~ia~~nE~~~la~~~GiD~~~v~~ 241 (411)
T TIGR03026 191 IEDGPVLVTSIETAEMIKLAENTFR--------------AVKIAFANELARICEALGIDVYEVIE 241 (411)
T ss_pred ccCCCEEcCCHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 5 46777889999999999999852 22224789999999999999988754
No 20
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.79 E-value=1.4e-17 Score=165.50 Aligned_cols=198 Identities=16% Similarity=0.080 Sum_probs=146.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
.|||+|||+|+||.+|+..|.++ |++.+ .+|++|+|++++++.+. +. +
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~-g~~~~-~~I~v~~r~~~~~~~l~--------~~-------------~--------- 49 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINK-NIVSP-DQIICSDLNVSNLKNAS--------DK-------------Y--------- 49 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHC-CCCCC-ceEEEECCCHHHHHHHH--------Hh-------------c---------
Confidence 36899999999999999999988 74333 58999999876544210 00 0
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
++..+++.++++++||+||+|||++.++++++++.+++++ ++++||++.|+..
T Consensus 50 ------------------------g~~~~~~~~e~~~~aDiIiLavkP~~~~~vl~~l~~~~~~---~~lvISi~AGi~i 102 (272)
T PRK12491 50 ------------------------GITITTNNNEVANSADILILSIKPDLYSSVINQIKDQIKN---DVIVVTIAAGKSI 102 (272)
T ss_pred ------------------------CcEEeCCcHHHHhhCCEEEEEeChHHHHHHHHHHHHhhcC---CcEEEEeCCCCcH
Confidence 2344567777789999999999999999999999998876 6899999999987
Q ss_pred ccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEE-eCChhHHHHHHHHhcCCCceEEecCChHHHH
Q 012547 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHE 281 (461)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~-~~~~~~~~~l~~ll~~~g~~v~~s~Di~gve 281 (461)
+ .|++.++.. .+ +++.+||++..++.|...+..- ..++++.+.+.++|+..|...++.++.+
T Consensus 103 ~------------~l~~~l~~~-~~-vvR~MPN~~~~vg~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~~~E~~~--- 165 (272)
T PRK12491 103 K------------STENEFDRK-LK-VIRVMPNTPVLVGEGMSALCFNEMVTEKDIKEVLNIFNIFGQTEVVNEKLM--- 165 (272)
T ss_pred H------------HHHHhcCCC-Cc-EEEECCChHHHHcCceEEEEeCCCCCHHHHHHHHHHHHcCCCEEEEcHHHh---
Confidence 5 478877632 23 6899999999999986443221 2245678899999999998888877643
Q ss_pred HHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhh
Q 012547 282 VMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKL 329 (461)
Q Consensus 282 ~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~ 329 (461)
|++...+|.. + +++...+..+..-+..+|.+.++.
T Consensus 166 ------d~~talsgsg---P----Af~~~~~eal~~a~v~~Gl~~~~A 200 (272)
T PRK12491 166 ------DVVTSISGSS---P----AYVYMFIEAMADAAVLGGMPRKQA 200 (272)
T ss_pred ------hhHHHhccCc---H----HHHHHHHHHHHHHHHHcCCCHHHH
Confidence 2222233322 2 555666677777788889987654
No 21
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.76 E-value=9.8e-17 Score=156.03 Aligned_cols=198 Identities=15% Similarity=0.139 Sum_probs=140.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC-chhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP-GRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~-~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.|||+|||+|.||++++..|+++ |.... .++.+++|+ ++..+.+ ..
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~-~~~~~-~~i~~~~~~~~~~~~~~--------------------------~~----- 50 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKT-SKEYI-EEIIVSNRSNVEKLDQL--------------------------QA----- 50 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhC-CCCCc-CeEEEECCCCHHHHHHH--------------------------HH-----
Confidence 47999999999999999999877 52110 136677764 3332210 00
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
.+ ++..++|.+++++++|+||+|||++.++++++++.++++ +++|||+++|++
T Consensus 51 ---~~--------------------~~~~~~~~~~~~~~~DiViiavp~~~~~~v~~~l~~~~~----~~~vis~~~gi~ 103 (245)
T PRK07634 51 ---RY--------------------NVSTTTDWKQHVTSVDTIVLAMPPSAHEELLAELSPLLS----NQLVVTVAAGIG 103 (245)
T ss_pred ---Hc--------------------CcEEeCChHHHHhcCCEEEEecCHHHHHHHHHHHHhhcc----CCEEEEECCCCC
Confidence 00 234557788888999999999999999999999998765 469999999998
Q ss_pred cccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEE-eCChhHHHHHHHHhcCCCceEEecCChHHH
Q 012547 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTH 280 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~-~~~~~~~~~l~~ll~~~g~~v~~s~Di~gv 280 (461)
.+ .|++.++.. ...+++|||++.+++.+.+..... ..+++..+.++++|+.-|-..++.++..
T Consensus 104 ~~------------~l~~~~~~~--~~v~r~~Pn~a~~v~~g~~~~~~~~~~~~~~~~~v~~lf~~~G~~~~~~e~~~-- 167 (245)
T PRK07634 104 PS------------YLEERLPKG--TPVAWIMPNTAAEIGKSISLYTMGQSVNETHKETLQLILKGIGTSQLCTEEEV-- 167 (245)
T ss_pred HH------------HHHHHcCCC--CeEEEECCcHHHHHhcCCeEEeeCCCCCHHHHHHHHHHHHhCCCEEEECHHHc--
Confidence 75 477777532 235689999999999998766543 4567888999999999998887765432
Q ss_pred HHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhc
Q 012547 281 EVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLA 330 (461)
Q Consensus 281 e~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~ 330 (461)
+.++..+|.. + +++...+..+...+...|.+.+...
T Consensus 168 -------~~~~a~~gs~---p----a~~~~~~~a~~~~~~~~Gl~~~~a~ 203 (245)
T PRK07634 168 -------HQLTAVTGSA---P----AFLYYFAESLIEATKSYGVDEETAK 203 (245)
T ss_pred -------chHHhhhcch---H----HHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 2223322222 1 3444455566677888899876643
No 22
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.73 E-value=5.2e-16 Score=152.99 Aligned_cols=197 Identities=20% Similarity=0.147 Sum_probs=148.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
+|||+|||+|+||.+|+..|.++ |.+.+ .+|.+.+|++++.+++. .
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~-g~~~~-~~I~v~~~~~e~~~~l~---------~----------------------- 46 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKS-GALPP-EEIIVTNRSEEKRAALA---------A----------------------- 46 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhc-CCCCc-ceEEEeCCCHHHHHHHH---------H-----------------------
Confidence 47999999999999999999998 74443 68999999987554210 0
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
.+ ++..++|.++++.++|+||+|||++.+++++.++.+ +.+ +++|||+..|+..
T Consensus 47 --~~--------------------g~~~~~~~~~~~~~advv~LavKPq~~~~vl~~l~~-~~~---~~lvISiaAGv~~ 100 (266)
T COG0345 47 --EY--------------------GVVTTTDNQEAVEEADVVFLAVKPQDLEEVLSKLKP-LTK---DKLVISIAAGVSI 100 (266)
T ss_pred --Hc--------------------CCcccCcHHHHHhhCCEEEEEeChHhHHHHHHHhhc-ccC---CCEEEEEeCCCCH
Confidence 01 112367778889999999999999999999999998 554 6899999999987
Q ss_pred ccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEE-EeCChhHHHHHHHHhcCCCceEEecCChHHHH
Q 012547 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANAR-ICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHE 281 (461)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~-~~~~~~~~~~l~~ll~~~g~~v~~s~Di~gve 281 (461)
+ .+++.++ . .+ +++.+||++..++.|...... ...+++..+.+.++|+.-|..+++.++.+..
T Consensus 101 ~------------~l~~~l~-~-~~-vvR~MPNt~a~vg~g~t~i~~~~~~~~~~~~~v~~l~~~~G~v~~v~E~~~da- 164 (266)
T COG0345 101 E------------TLERLLG-G-LR-VVRVMPNTPALVGAGVTAISANANVSEEDKAFVEALLSAVGKVVEVEESLMDA- 164 (266)
T ss_pred H------------HHHHHcC-C-Cc-eEEeCCChHHHHcCcceeeecCccCCHHHHHHHHHHHHhcCCeEEechHHhhH-
Confidence 5 4888887 2 33 689999999999999654432 1235677889999999999999988876532
Q ss_pred HHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhc
Q 012547 282 VMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLA 330 (461)
Q Consensus 282 ~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~ 330 (461)
++..+|-. + +++...+..|..-+...|.+.++..
T Consensus 165 --------~TaisGSg---P----Ayv~~~iEal~~agv~~Gl~~~~A~ 198 (266)
T COG0345 165 --------VTALSGSG---P----AYVFLFIEALADAGVRLGLPREEAR 198 (266)
T ss_pred --------HHHHhcCC---H----HHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 23333322 2 5666667777778888998776543
No 23
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.70 E-value=1.3e-15 Score=155.47 Aligned_cols=220 Identities=18% Similarity=0.138 Sum_probs=159.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|++|...|..||+. | |+|++++.++++++. +|.+. -|.|.|+++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~-G-----HeVv~vDid~~KV~~---------ln~g~--------~PI~EpgLe----- 52 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAEL-G-----HEVVCVDIDESKVEL---------LNKGI--------SPIYEPGLE----- 52 (414)
T ss_pred CceEEECCchHHHHHHHHHHHc-C-----CeEEEEeCCHHHHHH---------HhCCC--------CCCcCccHH-----
Confidence 8999999999999999999999 8 999999999998876 44443 477888764
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc----------hhHHHHHHHHHHHhhccCCCCEE
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------TETKEVFEEISRYWKERITVPVI 193 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps----------~~~~~vl~~i~~~l~~~~~~~iI 193 (461)
|+|.++... .++.+|+|.+++++++|++|||||. .++++++++|.+++.. .+ +
T Consensus 53 ------~ll~~~~~~-------gRl~fTtd~~~a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~---~~-v 115 (414)
T COG1004 53 ------ELLKENLAS-------GRLRFTTDYEEAVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDG---KA-V 115 (414)
T ss_pred ------HHHHhcccc-------CcEEEEcCHHHHHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCC---Ce-E
Confidence 344443211 1489999999999999999999975 2789999999998875 33 3
Q ss_pred EEEeecCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhcc----CceEEEEeCChh-HHHHHHHHhcCC-
Q 012547 194 ISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNK----EYANARICGAEK-WRKPLAKFLRRP- 267 (461)
Q Consensus 194 Is~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g----~~~~~~~~~~~~-~~~~l~~ll~~~- 267 (461)
| +.|...+- ++...+.+.+.+.... ..+.+.+.|.|.+|...- .|..++++..++ ..+.+.+++...
T Consensus 116 v-V~KSTVPv----Gt~~~v~~~i~~~~~~--~~f~v~~NPEFLREG~Av~D~~~PdRIViG~~~~~a~~~~~ely~~~~ 188 (414)
T COG1004 116 V-VIKSTVPV----GTTEEVRAKIREENSG--KDFEVASNPEFLREGSAVYDFLYPDRIVIGVRSERAAAVLRELYAPFL 188 (414)
T ss_pred E-EEcCCCCC----CchHHHHHHHHhhccc--CCceEecChHHhcCcchhhhccCCCeEEEccCChhHHHHHHHHHhhhh
Confidence 3 45554443 1444444444444322 257789999999997753 366777766544 477788887542
Q ss_pred -CceEEecCChHHHHHHHHHHHHHHHHHhhccCccchHHHHHHH--HHHHHHHHHHHhCCCchhhcc
Q 012547 268 -HFTVWDNGDLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAH--CTSEMVFITHLLAEEPEKLAG 331 (461)
Q Consensus 268 -g~~v~~s~Di~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~--~~~Em~~l~~a~G~~~~t~~g 331 (461)
.-...+-.|+...|+-+..-|. .|.++ -++||..+|+..|+|.+.+..
T Consensus 189 ~~~~p~l~t~~~~AE~IKyaaNa----------------fLAtKIsFiNEia~ice~~g~D~~~V~~ 239 (414)
T COG1004 189 RQDVPILFTDLREAELIKYAANA----------------FLATKISFINEIANICEKVGADVKQVAE 239 (414)
T ss_pred hcCCCEEEecchHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 1223456788889998877766 23222 479999999999999877643
No 24
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.70 E-value=1.1e-15 Score=152.26 Aligned_cols=198 Identities=14% Similarity=0.098 Sum_probs=140.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh-hhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS-VDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~-~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
||||+|||+|+||++++..|.++ |.+.+ ++|.+|+|+.+. ++. . .. .+ +
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~-g~~~~-~~V~~~~r~~~~~~~~--------l-~~------------~~-~------ 50 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLET-EVATP-EEIILYSSSKNEHFNQ--------L-YD------------KY-P------ 50 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-CCCCc-ccEEEEeCCcHHHHHH--------H-HH------------Hc-C------
Confidence 37899999999999999999988 63332 689999987532 111 0 00 00 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
.+.++.|..++++++|+||+|||++.++++++++.+++.+ ++.|||+++|++
T Consensus 51 -------------------------~~~~~~~~~e~~~~aDvVilavpp~~~~~vl~~l~~~l~~---~~~ivS~~aGi~ 102 (277)
T PRK06928 51 -------------------------TVELADNEAEIFTKCDHSFICVPPLAVLPLLKDCAPVLTP---DRHVVSIAAGVS 102 (277)
T ss_pred -------------------------CeEEeCCHHHHHhhCCEEEEecCHHHHHHHHHHHHhhcCC---CCEEEEECCCCC
Confidence 2344567777889999999999999999999999998876 678999999998
Q ss_pred cccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEE-eCChhHHHHHHHHhcCCCceEEecCChHHH
Q 012547 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTH 280 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~-~~~~~~~~~l~~ll~~~g~~v~~s~Di~gv 280 (461)
.+ .|++.++. .+ +++.+||++..++.|...+..- ..+++..+.+.++|+..|...+++++.+.
T Consensus 103 ~~------------~l~~~~~~--~~-vvR~MPN~~~~~g~g~t~~~~~~~~~~~~~~~v~~l~~~~G~~~~v~E~~~d- 166 (277)
T PRK06928 103 LD------------DLLEITPG--LQ-VSRLIPSLTSAVGVGTSLVAHAETVNEANKSRLEETLSHFSHVMTIREENMD- 166 (277)
T ss_pred HH------------HHHHHcCC--CC-EEEEeCccHHHHhhhcEEEecCCCCCHHHHHHHHHHHHhCCCEEEEchhhCc-
Confidence 75 37777752 23 6899999999999986433221 22466788999999999988888765432
Q ss_pred HHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHh-CCCchhh
Q 012547 281 EVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLL-AEEPEKL 329 (461)
Q Consensus 281 e~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~-G~~~~t~ 329 (461)
++++++.-++ +++...+..+..-+.+. |.+.+..
T Consensus 167 -----------~~tal~gsgP----A~~~~~~~al~~a~~~~ggl~~~~a 201 (277)
T PRK06928 167 -----------IASNLTSSSP----GFIAAIFEEFAEAAVRNSSLSDEEA 201 (277)
T ss_pred -----------eeeeeecCHH----HHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 1222222112 45555666666667777 5666543
No 25
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.69 E-value=2.3e-15 Score=148.63 Aligned_cols=190 Identities=14% Similarity=0.139 Sum_probs=136.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|+||++++..|.++ |.+.+ .++++++|+++..
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~-~~~~~-~~i~~~~~~~~~~-------------------------------------- 43 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENS-NIIGK-ENIYYHTPSKKNT-------------------------------------- 43 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhC-CCCCc-ceEEEECCChhcC--------------------------------------
Confidence 7999999999999999999987 64332 4577777764310
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
......++.++++++|+||+|||+++++++++++.+++.+ ..|||+++|+..+
T Consensus 44 -----------------------~~~~~~~~~~~~~~~D~Vilavkp~~~~~vl~~i~~~l~~----~~iIS~~aGi~~~ 96 (260)
T PTZ00431 44 -----------------------PFVYLQSNEELAKTCDIIVLAVKPDLAGKVLLEIKPYLGS----KLLISICGGLNLK 96 (260)
T ss_pred -----------------------CeEEeCChHHHHHhCCEEEEEeCHHHHHHHHHHHHhhccC----CEEEEEeCCccHH
Confidence 1123456667778999999999999999999999998764 5789999999864
Q ss_pred cccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEE-eCChhHHHHHHHHhcCCCceEEecCChHHHHH
Q 012547 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEV 282 (461)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~-~~~~~~~~~l~~ll~~~g~~v~~s~Di~gve~ 282 (461)
.+++.++. ....++.+||++..++.+...++.. ..+++..+.++++|+..|..+++.++.+.
T Consensus 97 ------------~l~~~~~~--~~~vvr~mPn~p~~~g~g~t~i~~~~~~~~~~~~~v~~l~~~~G~~~~v~E~~~d--- 159 (260)
T PTZ00431 97 ------------TLEEMVGV--EAKIVRVMPNTPSLVGQGSLVFCANNNVDSTDKKKVIDIFSACGIIQEIKEKDMD--- 159 (260)
T ss_pred ------------HHHHHcCC--CCeEEEECCCchhHhcceeEEEEeCCCCCHHHHHHHHHHHHhCCcEEEEChHHcc---
Confidence 47777653 2236789999999888875333221 22456788999999999999998876432
Q ss_pred HHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhc
Q 012547 283 MGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLA 330 (461)
Q Consensus 283 ~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~ 330 (461)
++ ++++.-++ +++...+..+..-+.+.|.+.++..
T Consensus 160 ------~~---ta~~gsgP----A~~~~~~~al~~~~v~~Gl~~~~a~ 194 (260)
T PTZ00431 160 ------IA---TAISGCGP----AYVFLFIESLIDAGVKNGLNRDVSK 194 (260)
T ss_pred ------hh---hhhcCCHH----HHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 22 22322112 4555566667777888898876543
No 26
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.65 E-value=4.2e-15 Score=147.89 Aligned_cols=199 Identities=16% Similarity=0.191 Sum_probs=139.0
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
+||++||.|.||..||..|.++ | |+|++|+|++++.... ...
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~a-G-----~~v~v~~r~~~ka~~~--------~~~------------------------ 42 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKA-G-----HEVTVYNRTPEKAAEL--------LAA------------------------ 42 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHC-C-----CEEEEEeCChhhhhHH--------HHH------------------------
Confidence 6899999999999999999999 8 9999999998763210 000
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHH---HHHHHHhhccCCCCEEEEEeec
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF---EEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl---~~i~~~l~~~~~~~iIIs~tkG 199 (461)
.+.....++.++++.+|+||.++|. .++++++ ..+.+.+++ ++++|.++ .
T Consensus 43 ----------------------~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g~~~~~~~---G~i~IDmS-T 96 (286)
T COG2084 43 ----------------------AGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENGLLEGLKP---GAIVIDMS-T 96 (286)
T ss_pred ----------------------cCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccchhhcCCC---CCEEEECC-C
Confidence 0234556778889999999999985 6899988 456666676 68888766 5
Q ss_pred CccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEE-EEeCChhHHHHHHHHhcCCCceEEecCChH
Q 012547 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANA-RICGAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~-~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~ 278 (461)
++++ ..+.+.+.+++ .|.......|..|+--+. .| +.+ +++++++..++++.+|+.-+-+++...+.-
T Consensus 97 isp~-----~a~~~a~~~~~-~G~~~lDAPVsGg~~~A~---~G--tLtimvGG~~~~f~r~~pvl~~~g~~i~~~G~~G 165 (286)
T COG2084 97 ISPE-----TARELAAALAA-KGLEFLDAPVSGGVPGAA---AG--TLTIMVGGDAEAFERAKPVLEAMGKNIVHVGPVG 165 (286)
T ss_pred CCHH-----HHHHHHHHHHh-cCCcEEecCccCCchhhh---hC--ceEEEeCCCHHHHHHHHHHHHHhcCceEEECCCC
Confidence 6665 23334444433 232111112333343332 33 333 467888999999999999998888887772
Q ss_pred HHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhcc
Q 012547 279 THEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAG 331 (461)
Q Consensus 279 gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g 331 (461)
.-+..+++.|++ .+....++.|...++++.|.+++.+..
T Consensus 166 ~G~~~Kl~nn~l--------------~~~~~~a~aEAl~la~k~Gld~~~~~~ 204 (286)
T COG2084 166 AGQAAKLANNIL--------------LAGNIAALAEALALAEKAGLDPDVVLE 204 (286)
T ss_pred chHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 234455555552 234446889999999999999988865
No 27
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.65 E-value=3.5e-14 Score=141.41 Aligned_cols=199 Identities=15% Similarity=0.153 Sum_probs=137.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch-hhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR-SVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~-~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.|||+|||+|+||++|+..|.++ |.+.+ ++|.+|+|+.+ .++.+. . .
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~-g~~~~-~~v~v~~r~~~~~~~~l~---------~---------------~------ 50 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHA-NVVKG-EQITVSNRSNETRLQELH---------Q---------------K------ 50 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-CCCCc-ceEEEECCCCHHHHHHHH---------H---------------h------
Confidence 37999999999999999999988 63333 78999998753 222100 0 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
.++..+.++.+++++||+||+|||++.+.++++++.+.+.+ +++||++++|+.
T Consensus 51 ------------------------~g~~~~~~~~e~~~~aDvVilav~p~~~~~vl~~l~~~~~~---~~liIs~~aGi~ 103 (279)
T PRK07679 51 ------------------------YGVKGTHNKKELLTDANILFLAMKPKDVAEALIPFKEYIHN---NQLIISLLAGVS 103 (279)
T ss_pred ------------------------cCceEeCCHHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCC---CCEEEEECCCCC
Confidence 02345677888889999999999999999999999988776 689999999997
Q ss_pred cccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeC--ChhHHHHHHHHhcCCCceEEecCChHH
Q 012547 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~--~~~~~~~l~~ll~~~g~~v~~s~Di~g 279 (461)
.+ .+++.++.. .+ ++..+||++..+..+.. .+..+. +++..+.++++|+.-|-.+++.++.+.
T Consensus 104 ~~------------~l~~~~~~~-~~-v~r~mPn~~~~~~~~~t-~~~~~~~~~~~~~~~v~~l~~~~G~~~~v~e~~~~ 168 (279)
T PRK07679 104 TH------------SIRNLLQKD-VP-IIRAMPNTSAAILKSAT-AISPSKHATAEHIQTAKALFETIGLVSVVEEEDMH 168 (279)
T ss_pred HH------------HHHHHcCCC-Ce-EEEECCCHHHHHhcccE-EEeeCCCCCHHHHHHHHHHHHhCCcEEEeCHHHhh
Confidence 65 356655421 23 67899999988777643 222222 356778999999999987777765321
Q ss_pred HHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhcc
Q 012547 280 HEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAG 331 (461)
Q Consensus 280 ve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g 331 (461)
..+|++..++. ++...+.-+...+...|.+++....
T Consensus 169 ------------~~~a~~Gsgpa----~~~~~~eal~e~~~~~Gl~~~~a~~ 204 (279)
T PRK07679 169 ------------AVTALSGSGPA----YIYYVVEAMEKAAKKIGLKEDVAKS 204 (279)
T ss_pred ------------hHHHhhcCHHH----HHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 12233322222 2222333334458889998876644
No 28
>PRK07680 late competence protein ComER; Validated
Probab=99.64 E-value=2.8e-14 Score=141.68 Aligned_cols=161 Identities=12% Similarity=0.204 Sum_probs=120.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|+||++++..|.++ |.+.+ ++|.+|+|+++.++.+. . .+ +
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~-g~~~~-~~v~v~~r~~~~~~~~~---------~------------~~-~-------- 48 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLES-GAVKP-SQLTITNRTPAKAYHIK---------E------------RY-P-------- 48 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHC-CCCCc-ceEEEECCCHHHHHHHH---------H------------Hc-C--------
Confidence 6899999999999999999988 73322 47999999976543210 0 00 0
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
++..+.+.++++.++|+||+|||+++++++++++.+++.+ +++||++++|+...
T Consensus 49 -----------------------g~~~~~~~~~~~~~aDiVilav~p~~~~~vl~~l~~~l~~---~~~iis~~ag~~~~ 102 (273)
T PRK07680 49 -----------------------GIHVAKTIEEVISQSDLIFICVKPLDIYPLLQKLAPHLTD---EHCLVSITSPISVE 102 (273)
T ss_pred -----------------------CeEEECCHHHHHHhCCEEEEecCHHHHHHHHHHHHhhcCC---CCEEEEECCCCCHH
Confidence 2445667778789999999999999999999999998876 67999999998543
Q ss_pred cccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEe--CChhHHHHHHHHhcCCCceEEecCChHH
Q 012547 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (461)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di~g 279 (461)
.+++.++. . .++..||.+.....|.... ..+ .+++..+.+.++|+..|..+++.+|+..
T Consensus 103 ------------~L~~~~~~---~-~~r~~p~~~~~~~~G~t~~-~~g~~~~~~~~~~~~~ll~~~G~~~~i~e~~~~ 163 (273)
T PRK07680 103 ------------QLETLVPC---Q-VARIIPSITNRALSGASLF-TFGSRCSEEDQQKLERLFSNISTPLVIEEDITR 163 (273)
T ss_pred ------------HHHHHcCC---C-EEEECCChHHHHhhccEEE-eeCCCCCHHHHHHHHHHHHcCCCEEEEChHhcc
Confidence 46666652 2 4678899887666664322 233 2456678999999999988888887543
No 29
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.64 E-value=5.3e-14 Score=138.70 Aligned_cols=197 Identities=14% Similarity=0.086 Sum_probs=133.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEE-ecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIW-RRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~-~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
|||+|||+|+||++|+..|.++ |+..+ .+|++| +|++++.+.+ ..
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~-g~~~~-~~i~v~~~r~~~~~~~~--------------------------~~------ 46 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVAS-GVVPP-SRISTADDSNPARRDVF--------------------------QS------ 46 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHC-CCCCc-ceEEEEeCCCHHHHHHH--------------------------HH------
Confidence 7999999999999999999998 73222 388888 8887644320 00
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
.++..+++++++++++|+||+|+|+++++++++++.+.+.+ +++|||+++|+..
T Consensus 47 -----------------------~g~~~~~~~~e~~~~aDvVil~v~~~~~~~vl~~l~~~~~~---~~~iIs~~~g~~~ 100 (266)
T PLN02688 47 -----------------------LGVKTAASNTEVVKSSDVIILAVKPQVVKDVLTELRPLLSK---DKLLVSVAAGITL 100 (266)
T ss_pred -----------------------cCCEEeCChHHHHhcCCEEEEEECcHHHHHHHHHHHhhcCC---CCEEEEecCCCcH
Confidence 02345667778888999999999999999999999888776 6889999999865
Q ss_pred ccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEE-eCChhHHHHHHHHhcCCCceEEecCChHHHH
Q 012547 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHE 281 (461)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~-~~~~~~~~~l~~ll~~~g~~v~~s~Di~gve 281 (461)
+ .+.+.++. .+ .+..+|+.+..++.+...++.. ..+++..+.++++|+.-|-..+..++...
T Consensus 101 ~------------~l~~~~~~--~~-vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~G~~~~~~e~~~d-- 163 (266)
T PLN02688 101 A------------DLQEWAGG--RR-VVRVMPNTPCLVGEAASVMSLGPAATADDRDLVATLFGAVGKIWVVDEKLLD-- 163 (266)
T ss_pred H------------HHHHHcCC--CC-EEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHHHHHHhCCCEEEeCHHHcc--
Confidence 4 35566653 23 4568999998877765333222 23567789999999998874444443221
Q ss_pred HHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhcc
Q 012547 282 VMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAG 331 (461)
Q Consensus 282 ~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g 331 (461)
.+++++..++- -.+.+..++.|. +.+.|.+++.+..
T Consensus 164 ----------~~~~~~g~g~a-~~~~~~~a~~ea---~~~~Gl~~~~a~~ 199 (266)
T PLN02688 164 ----------AVTGLSGSGPA-YIFLAIEALADG---GVAAGLPRDVALS 199 (266)
T ss_pred ----------hhHhhhcCHHH-HHHHHHHHHHHH---HHHcCCCHHHHHH
Confidence 11222211111 112334455554 8888999877643
No 30
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.61 E-value=8.6e-14 Score=137.29 Aligned_cols=194 Identities=18% Similarity=0.163 Sum_probs=133.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
+|||+|||+|+||++++..|.++ |. .+ ++|.+|+|+++..+.+.. .|
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~-g~-~~-~~v~v~~r~~~~~~~~~~---------------------~~--------- 48 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLAS-GV-PA-KDIIVSDPSPEKRAALAE---------------------EY--------- 48 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhC-CC-Cc-ceEEEEcCCHHHHHHHHH---------------------hc---------
Confidence 58999999999999999999988 62 21 589999999765443110 00
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
++..+++.++++.++|+||+|||++.++++++++.+++ + +.|||+++|+..
T Consensus 49 ------------------------g~~~~~~~~~~~~~advVil~v~~~~~~~v~~~l~~~~-~----~~vvs~~~gi~~ 99 (267)
T PRK11880 49 ------------------------GVRAATDNQEAAQEADVVVLAVKPQVMEEVLSELKGQL-D----KLVVSIAAGVTL 99 (267)
T ss_pred ------------------------CCeecCChHHHHhcCCEEEEEcCHHHHHHHHHHHHhhc-C----CEEEEecCCCCH
Confidence 12345667777889999999999999999999999876 3 589999999864
Q ss_pred ccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEe--CChhHHHHHHHHhcCCCceEEec-CChHH
Q 012547 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDN-GDLVT 279 (461)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v~~s-~Di~g 279 (461)
+ .+++.++.. .+ .+...|+++..+..+.. .+..+ .+++..+.++++|+..|..+++. ++..
T Consensus 100 ~------------~l~~~~~~~-~~-iv~~~P~~p~~~~~~~~-~i~~~~~~~~~~~~~v~~l~~~lG~~~~~~~e~~~- 163 (267)
T PRK11880 100 A------------RLERLLGAD-LP-VVRAMPNTPALVGAGMT-ALTANALVSAEDRELVENLLSAFGKVVWVDDEKQM- 163 (267)
T ss_pred H------------HHHHhcCCC-Cc-EEEecCCchHHHcCceE-EEecCCCCCHHHHHHHHHHHHhCCeEEEECChHhc-
Confidence 3 466666521 23 45689999987777633 22333 35677889999999999777665 3321
Q ss_pred HHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhh
Q 012547 280 HEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKL 329 (461)
Q Consensus 280 ve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~ 329 (461)
+.++..+|. ++ +++...+..+...+...|.+++..
T Consensus 164 --------d~~~a~~~~---~p----a~~~~~~~~~~~~~~~~Gl~~~~a 198 (267)
T PRK11880 164 --------DAVTAVSGS---GP----AYVFLFIEALADAGVKLGLPREQA 198 (267)
T ss_pred --------chHHHHhcC---hH----HHHHHHHHHHHHHHHHcCCCHHHH
Confidence 221212221 12 333345566667778888877654
No 31
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.59 E-value=1.6e-13 Score=137.45 Aligned_cols=255 Identities=16% Similarity=0.172 Sum_probs=153.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
+|||+|||+|.||.++|..|++. | ++|.+|+|+++..+.+. .
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~-g-----~~v~~~d~~~~~~~~~~---------~----------------------- 43 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKA-G-----YSLVVYDRNPEAVAEVI---------A----------------------- 43 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHC-C-----CeEEEEcCCHHHHHHHH---------H-----------------------
Confidence 47999999999999999999998 8 89999999986544210 0
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHH---HHHHHHhhccCCCCEEEEEee
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF---EEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl---~~i~~~l~~~~~~~iIIs~tk 198 (461)
.+...+++++++++++|+||+|+|. ..++.++ +.+.+.+.+ +++++.++.
T Consensus 44 -----------------------~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~---g~iiid~st 97 (296)
T PRK11559 44 -----------------------AGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGIIEGAKP---GTVVIDMSS 97 (296)
T ss_pred -----------------------CCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchHhhcCCC---CcEEEECCC
Confidence 0233456778888999999999994 5667776 456676665 677776653
Q ss_pred cCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhh--hccCceEEEEeCChhHHHHHHHHhcCCCceEEecCC
Q 012547 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEI--YNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276 (461)
Q Consensus 199 Gi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev--~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~D 276 (461)
+.+.. ++.+.+.+.... +.++..|-+..+. ..+... ++++++++..+.++.+|..-+.++....+
T Consensus 98 -~~~~~---------~~~l~~~~~~~g--~~~~d~pv~g~~~~a~~g~l~-i~~gg~~~~~~~~~~~l~~~~~~~~~~g~ 164 (296)
T PRK11559 98 -IAPLA---------SREIAAALKAKG--IEMLDAPVSGGEPKAIDGTLS-VMVGGDKAIFDKYYDLMKAMAGSVVHTGD 164 (296)
T ss_pred -CCHHH---------HHHHHHHHHHcC--CcEEEcCCCCCHHHHhhCcEE-EEECCCHHHHHHHHHHHHHhcCCeEEeCC
Confidence 33321 122333332111 1123334222111 123222 34567778888899999877766665555
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhccC---hhhhhhhhccccchhHHHHHH
Q 012547 277 LVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP---LLADTYVTLLKGRNAWYGQEL 353 (461)
Q Consensus 277 i~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~---glgDl~~T~~~sRN~~~G~~l 353 (461)
.-..+..+++-|.+- +.....++|+..+++..|.+++.+... +.+..... ..+ +..+
T Consensus 165 ~g~a~~~Kl~~n~~~--------------~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~~~s~~~--~~~----~~~~ 224 (296)
T PRK11559 165 IGAGNVTKLANQVIV--------------ALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVL--DAK----APMV 224 (296)
T ss_pred cCHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHH--Hhh----chHh
Confidence 433455555555421 222357899999999999998876431 12110000 000 0011
Q ss_pred hcCCChhhHhhhhcCCCccch-HHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHH
Q 012547 354 AKGRLTLDLGDSIKGKGMIQG-ISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKIL 417 (461)
Q Consensus 354 ~~g~~~~~~~~~~~~~~~vEG-~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il 417 (461)
.++. +...-+++- ......+.+++++.|+ + +|+.+.+++++
T Consensus 225 ~~~d--------~~~~f~~~~~~KDl~~~~~~a~~~g~--------------~-~p~~~~~~~~~ 266 (296)
T PRK11559 225 MDRN--------FKPGFRIDLHIKDLANALDTSHGVGA--------------P-LPLTAAVMEMM 266 (296)
T ss_pred hcCC--------CCCCcchHHHHHHHHHHHHHHHHcCC--------------C-ChHHHHHHHHH
Confidence 1110 000112322 2335678999999995 6 79999999877
No 32
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.57 E-value=1.5e-13 Score=138.23 Aligned_cols=199 Identities=13% Similarity=0.091 Sum_probs=128.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
+||+|||+|.||++||..|+++ | ++|++|+|++++++.+...
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~-G-----~~V~v~d~~~~~~~~~~~~-------------------------------- 43 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQ-G-----HQLQVFDVNPQAVDALVDK-------------------------------- 43 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHC-C-----CeEEEEcCCHHHHHHHHHc--------------------------------
Confidence 5899999999999999999999 8 8999999998765431100
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-hHHHHHH---HHHHHhhccCCCCEEEEEeec
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE---EISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-~~~~vl~---~i~~~l~~~~~~~iIIs~tkG 199 (461)
....+.++.++++++|+||+|+|+. .+++++. .+.+.+++ ++++|.++++
T Consensus 44 -----------------------g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~---g~lvid~sT~ 97 (296)
T PRK15461 44 -----------------------GATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGVCEGLSR---DALVIDMSTI 97 (296)
T ss_pred -----------------------CCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccHhhcCCC---CCEEEECCCC
Confidence 1233456778889999999999987 5888874 34455554 6777777755
Q ss_pred CccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEecCChHH
Q 012547 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~g 279 (461)
-... ...+.+.+.+ .|.......+..||..+. .|..+ ++++++++..++++.+|+.-+-+++...++-.
T Consensus 98 ~p~~------~~~l~~~l~~-~g~~~ldapV~g~~~~a~---~g~l~-~~~gg~~~~~~~~~p~l~~~g~~~~~~g~~G~ 166 (296)
T PRK15461 98 HPLQ------TDKLIADMQA-KGFSMMDVPVGRTSDNAI---TGTLL-LLAGGTAEQVERATPILMAMGNELINAGGPGM 166 (296)
T ss_pred CHHH------HHHHHHHHHH-cCCcEEEccCCCCHHHHH---hCcEE-EEECCCHHHHHHHHHHHHHHcCCeEeeCCCCH
Confidence 4332 1112222222 121111112333333332 44332 34677888888999999887777777776532
Q ss_pred HHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhcc
Q 012547 280 HEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAG 331 (461)
Q Consensus 280 ve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g 331 (461)
-...+++-|.+ ......++.|...++++.|.+++.+..
T Consensus 167 g~~~Kl~~N~~--------------~~~~~~~~~Ea~~l~~~~Gld~~~~~~ 204 (296)
T PRK15461 167 GIRVKLINNYM--------------SIALNALSAEAAVLCEALGLSFDVALK 204 (296)
T ss_pred HHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 33444444442 223335679999999999999987653
No 33
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.55 E-value=3e-13 Score=135.28 Aligned_cols=196 Identities=13% Similarity=0.123 Sum_probs=125.3
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccCC
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~ 124 (461)
||+|||+|.||.++|..|+++ | ++|++|+|+++.++.+. ..
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~-G-----~~V~~~dr~~~~~~~~~---------~~------------------------ 41 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA-G-----YQLHVTTIGPEVADELL---------AA------------------------ 41 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC-C-----CeEEEEcCCHHHHHHHH---------HC------------------------
Confidence 599999999999999999999 8 99999999987654311 00
Q ss_pred ccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-hHHHHH---HHHHHHhhccCCCCEEEEEeecC
Q 012547 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF---EEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-~~~~vl---~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
+....+++.+++++||+||+|+|.. .+++++ +.+.+.+.+ ++++|.++. +
T Consensus 42 ----------------------g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~~~~~~---g~iivd~st-~ 95 (291)
T TIGR01505 42 ----------------------GAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGIIEGAKP---GKTLVDMSS-I 95 (291)
T ss_pred ----------------------CCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHhhcCCC---CCEEEECCC-C
Confidence 1122356778889999999999974 666665 335555555 677776553 3
Q ss_pred ccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhh--ccCceEEEEeCChhHHHHHHHHhcCCCceEEecCChH
Q 012547 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIY--NKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~--~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~ 278 (461)
.+.. . +.+.+.+.... +.++..|-+..+.. .+.. .++++++++..+.++++|..-+.+++...+.-
T Consensus 96 ~~~~-----~----~~l~~~l~~~g--~~~~~~pv~g~~~~a~~g~l-~i~~gg~~~~~~~~~~ll~~lg~~~~~~g~~g 163 (291)
T TIGR01505 96 SPIE-----S----KRFAKAVKEKG--IDYLDAPVSGGEIGAIEGTL-SIMVGGDQAVFDRVKPLFEALGKNIVLVGGNG 163 (291)
T ss_pred CHHH-----H----HHHHHHHHHcC--CCEEecCCCCCHHHHhcCCE-EEEecCCHHHHHHHHHHHHHhcCCeEEeCCCC
Confidence 3321 1 22333232111 12344554433322 2322 23457777888899999988887666555432
Q ss_pred HHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhcc
Q 012547 279 THEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAG 331 (461)
Q Consensus 279 gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g 331 (461)
..+..+++-|. ..+....+++|+..++++.|.+++++..
T Consensus 164 ~a~~~Kl~~n~--------------~~~~~~~~~~Ea~~l~~~~Gid~~~~~~ 202 (291)
T TIGR01505 164 DGQTCKVANQI--------------IVALNIEAVSEALVFASKAGVDPVRVRQ 202 (291)
T ss_pred HHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 23344444433 2233446799999999999999988764
No 34
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.54 E-value=2.4e-13 Score=136.08 Aligned_cols=261 Identities=16% Similarity=0.100 Sum_probs=158.9
Q ss_pred EECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccCCccc
Q 012547 48 GVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLH 127 (461)
Q Consensus 48 IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~~l~ 127 (461)
|||.|.||.+||..|+++ | ++|++|+|+++.++.+..
T Consensus 1 ~IGlG~mG~~mA~~L~~~-G-----~~V~v~dr~~~~~~~l~~------------------------------------- 37 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKA-G-----HPVRVFDLFPDAVEEAVA------------------------------------- 37 (288)
T ss_pred CCcccHhHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-------------------------------------
Confidence 689999999999999999 8 999999999876543110
Q ss_pred hhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHH---HHHHHHhhccCCCCEEEEEeecCccc
Q 012547 128 ADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF---EEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl---~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
.+...++++.++++++|+||+|||+ .++++++ +.+.+.+.+ ++++|.++ ++.+.
T Consensus 38 ------------------~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~~~---g~~vid~s-t~~p~ 95 (288)
T TIGR01692 38 ------------------AGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKVAK---GSLLIDCS-TIDPD 95 (288)
T ss_pred ------------------cCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcCCC---CCEEEECC-CCCHH
Confidence 0233456788889999999999997 6788888 678777766 67888777 77775
Q ss_pred cccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEecCChHHHHHH
Q 012547 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVM 283 (461)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~gve~~ 283 (461)
+...+++.+.+ .|.......+..||..+. .|... .+++++++..++++.+|+..+-+++...+.-.-+..
T Consensus 96 -----~~~~~~~~~~~-~g~~~vdaPv~Gg~~~a~---~g~l~-~~~gg~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~~ 165 (288)
T TIGR01692 96 -----SARKLAELAAA-HGAVFMDAPVSGGVGGAR---AGTLT-FMVGGVAEEFAAAEPVLGPMGRNIVHCGDHGAGQAA 165 (288)
T ss_pred -----HHHHHHHHHHH-cCCcEEECCCCCCHHHHh---hCcEE-EEECCCHHHHHHHHHHHHHhcCCeEeeCCCCHHHHH
Confidence 23344454443 232111111233343332 33322 245777778888999998777666666554334445
Q ss_pred HHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhccChhhhhhhhccccchhHHHHHHhcCCChh-hH
Q 012547 284 GGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTLLKGRNAWYGQELAKGRLTL-DL 362 (461)
Q Consensus 284 galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~glgDl~~T~~~sRN~~~G~~l~~g~~~~-~~ 362 (461)
+++-|.+ ......++.|...++++.|.+++.+.. ++.+. .+++..+-.......... .+
T Consensus 166 Kl~~n~~--------------~~~~~~~~~Ea~~la~~~Gld~~~~~~-----~~~~~-~~~s~~~~~~~~~~~~~~~~~ 225 (288)
T TIGR01692 166 KICNNML--------------LGISMIGTAEAMALGEKLGLDPKVLFE-----IANTS-SGRCWSSDTYNPVPGVMPQAP 225 (288)
T ss_pred HHHHHHH--------------HHHHHHHHHHHHHHHHHcCCCHHHHHH-----HHhcC-CccCcHHHHhCCCcccccccc
Confidence 5555541 122234789999999999999988753 33222 111111110000000000 00
Q ss_pred -hhhhcCCC-ccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHh
Q 012547 363 -GDSIKGKG-MIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILI 418 (461)
Q Consensus 363 -~~~~~~~~-~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~ 418 (461)
...+...- .--..+.++.+.+++++.|+ + +|+.+.+.+++.
T Consensus 226 ~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~--------------~-~p~~~~~~~~~~ 268 (288)
T TIGR01692 226 ASNGYQGGFGTALMLKDLGLAQDAAKSAGA--------------P-TPLGALARQLYS 268 (288)
T ss_pred ccCCCCCCcchHHHHhhHHHHHHHHHHcCC--------------C-ChHHHHHHHHHH
Confidence 00011111 12334566688999999995 6 799888887763
No 35
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.52 E-value=2.6e-12 Score=129.35 Aligned_cols=198 Identities=13% Similarity=0.093 Sum_probs=128.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||.|.||.++|..|+++ | ++|.+|+|++++++.+. .
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~-g-----~~v~v~dr~~~~~~~~~---------~------------------------ 41 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLRED-G-----HEVVGYDVNQEAVDVAG---------K------------------------ 41 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhC-C-----CEEEEEECCHHHHHHHH---------H------------------------
Confidence 6899999999999999999998 8 89999999987554311 0
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcC---CCEEEEcCCch-hHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~---aDiIIiaVps~-~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
.+...+.++++++++ +|+||+|+|.. .++++++.+.+.+++ ++++|.++.+
T Consensus 42 ----------------------~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~~i~~~l~~---g~ivid~st~ 96 (299)
T PRK12490 42 ----------------------LGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIKDLYPLLSP---GDIVVDGGNS 96 (299)
T ss_pred ----------------------CCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHHHHhccCCC---CCEEEECCCC
Confidence 022345667776655 69999999987 999999998888776 6788877643
Q ss_pred CccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCc---eEEecCC
Q 012547 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHF---TVWDNGD 276 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~---~v~~s~D 276 (461)
.+.. ...+.+.+.+ .+.......+..||.-+. .|. .++++++++..+.++.+|..-+- +++...+
T Consensus 97 -~~~~-----~~~~~~~~~~-~g~~~vdapV~G~~~~a~---~g~--~~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~G~ 164 (299)
T PRK12490 97 -RYKD-----DLRRAEELAE-RGIHYVDCGTSGGVWGLR---NGY--CLMVGGDKEIYDRLEPVFKALAPEGPGYVHAGP 164 (299)
T ss_pred -Cchh-----HHHHHHHHHH-cCCeEEeCCCCCCHHHHh---cCC--eEEecCCHHHHHHHHHHHHHhcCcCCcEEEECC
Confidence 3321 1222222222 121111112233333222 343 34678888888888888887664 4555666
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhC--CCchhhcc
Q 012547 277 LVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLA--EEPEKLAG 331 (461)
Q Consensus 277 i~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G--~~~~t~~g 331 (461)
+-.-...+++-|. -......++.|...++++.| .+++.+..
T Consensus 165 ~g~a~~~Kl~~n~--------------~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~ 207 (299)
T PRK12490 165 VGSGHFLKMVHNG--------------IEYGMMQAYAEGLELLDKSDFDFDVEDVAR 207 (299)
T ss_pred cCHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHcccCCCHHHHHH
Confidence 4323334444444 22334468899999999998 78877654
No 36
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.52 E-value=1.9e-12 Score=136.46 Aligned_cols=283 Identities=10% Similarity=0.031 Sum_probs=172.7
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 40 ~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
...+|||+|||.|+||..+|..|++. ++|+.|++++++++.++ .+. .+.+.+.+.
T Consensus 3 ~~~~mkI~vIGlGyvGlpmA~~la~~-------~~V~g~D~~~~~ve~l~---------~G~--------~~~~e~~~~- 57 (425)
T PRK15182 3 GIDEVKIAIIGLGYVGLPLAVEFGKS-------RQVVGFDVNKKRILELK---------NGV--------DVNLETTEE- 57 (425)
T ss_pred CCCCCeEEEECcCcchHHHHHHHhcC-------CEEEEEeCCHHHHHHHH---------CcC--------CCCCCCCHH-
Confidence 34559999999999999999998864 89999999999887643 221 122222221
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch----------hHHHHHHHHHHHhhccCC
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------ETKEVFEEISRYWKERIT 189 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~----------~~~~vl~~i~~~l~~~~~ 189 (461)
++... ..+.++++.+ ++++||++|+|||.. ++....+.|.+++++
T Consensus 58 ----------~l~~~-----------g~l~~t~~~~-~~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~--- 112 (425)
T PRK15182 58 ----------ELREA-----------RYLKFTSEIE-KIKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNR--- 112 (425)
T ss_pred ----------HHHhh-----------CCeeEEeCHH-HHcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCC---
Confidence 12111 1456777775 589999999999853 566666788888876
Q ss_pred CCEEEEEeecCccccccccccCCHHHHHHhHhCCC-CCcEEEEeCcchhHhhhcc----CceEEEEeCChhHHHHHHHHh
Q 012547 190 VPVIISLAKGVEAELEAVPRIITPTQMINRATGVP-IENILYLGGPNIASEIYNK----EYANARICGAEKWRKPLAKFL 264 (461)
Q Consensus 190 ~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~-~~~v~vlsGPn~a~ev~~g----~~~~~~~~~~~~~~~~l~~ll 264 (461)
+++|| ....+.+.+ +.......+.+..|.. ...+.+..-|.+..+.... .+..++.+.+++..+.+..++
T Consensus 113 g~lVI-~~STv~pgt----t~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~~~~~~~riv~G~~~~~~~~~~~ly 187 (425)
T PRK15182 113 GDIVV-YESTVYPGC----TEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHRLTNIKKITSGSTAQIAELIDEVY 187 (425)
T ss_pred CCEEE-EecCCCCcc----hHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCcccccccCCCeEEECCCHHHHHHHHHHH
Confidence 56555 444666652 1112223333322321 1234566778877665432 233344555666667777777
Q ss_pred cCCC-ceEEecCChHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhccChhhhhhhhccc
Q 012547 265 RRPH-FTVWDNGDLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTLLK 343 (461)
Q Consensus 265 ~~~g-~~v~~s~Di~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~glgDl~~T~~~ 343 (461)
..-. ...+...|+...|+.+.+-|.+- +.--..++|+..+|+++|.|...+... .-+...
T Consensus 188 ~~~~~~~~~~~~~~~~AE~~Kl~~N~~~--------------av~Ia~~NE~a~lae~~GiD~~~v~~a-----~~~~~~ 248 (425)
T PRK15182 188 QQIISAGTYKAESIKVAEAAKVIENTQR--------------DLNIALVNELAIIFNRLNIDTEAVLRA-----AGSKWN 248 (425)
T ss_pred HHHhhcCcEEecCHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhCcCHHHHHHH-----hcCCCC
Confidence 6532 22456777888899988887731 222347899999999999998876542 111111
Q ss_pred cchhHHHHHHhcCCCh-hhHhhhhcCCCccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCC
Q 012547 344 GRNAWYGQELAKGRLT-LDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRES 422 (461)
Q Consensus 344 sRN~~~G~~l~~g~~~-~~~~~~~~~~~~vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~~~~ 422 (461)
-.++..|. +| |..+ .| ..++...++++|. + .++++++.++ ++ ..
T Consensus 249 ~~~~~pG~-vG-G~ClpkD----------------~~~L~~~a~~~g~--------------~-~~l~~~a~~i-N~-~~ 293 (425)
T PRK15182 249 FLPFRPGL-VG-GHCIGVD----------------PYYLTHKSQGIGY--------------Y-PEIILAGRRL-ND-NM 293 (425)
T ss_pred cccCCCCc-cc-ccccccc----------------HHHHHHHHHhcCC--------------C-cHHHHHHHHH-HH-HH
Confidence 11223333 22 3322 11 1257778888884 4 6888888877 33 33
Q ss_pred HHHHHHHHH
Q 012547 423 PIQAILEAL 431 (461)
Q Consensus 423 ~~~~~~~~l 431 (461)
|...+.++.
T Consensus 294 ~~~v~~~~~ 302 (425)
T PRK15182 294 GNYVSEQLI 302 (425)
T ss_pred HHHHHHHHH
Confidence 455554443
No 37
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.52 E-value=4.9e-13 Score=128.68 Aligned_cols=176 Identities=19% Similarity=0.202 Sum_probs=119.1
Q ss_pred ceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 44 mkI~IIG-aGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
|||+||| +|+||+++|..|+++ | ++|.+|+|++++++.++.+.+ .++...
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~-G-----~~V~v~~r~~~~~~~l~~~~~------------------~~~~~~----- 51 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKA-G-----NKIIIGSRDLEKAEEAAAKAL------------------EELGHG----- 51 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC-C-----CEEEEEEcCHHHHHHHHHHHH------------------hhcccc-----
Confidence 7999997 899999999999999 8 999999999877654322110 011100
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
|+. ..+.. ++..++++++|+||+|||+++++++++++.+.+. +++||+++||++.
T Consensus 52 ------------g~~--------~~~~~-~~~~ea~~~aDvVilavp~~~~~~~l~~l~~~l~----~~vvI~~~ngi~~ 106 (219)
T TIGR01915 52 ------------GSD--------IKVTG-ADNAEAAKRADVVILAVPWDHVLKTLESLRDELS----GKLVISPVVPLAS 106 (219)
T ss_pred ------------CCC--------ceEEE-eChHHHHhcCCEEEEECCHHHHHHHHHHHHHhcc----CCEEEEeccCcee
Confidence 000 01222 3556778999999999999999999999987765 4789999999986
Q ss_pred ccc-cc----cccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCc----eEEEEeCC-hhHHHHHHHHhcCC-CceE
Q 012547 203 ELE-AV----PRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEY----ANARICGA-EKWRKPLAKFLRRP-HFTV 271 (461)
Q Consensus 203 ~~~-~~----~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~----~~~~~~~~-~~~~~~l~~ll~~~-g~~v 271 (461)
... .. ......++.+++.++. ..+ ++...|+++.++..+.. ....++++ ++..+.+.++.... ||..
T Consensus 107 ~~~~~~~~~~~~~~s~~e~l~~~~p~-~~~-VVka~~~~~a~~~~~~~~~~~~~~~v~Gdd~~ak~~v~~L~~~~~G~~~ 184 (219)
T TIGR01915 107 DGGKGARYLPPEEGSAAEQAAALLPE-TSR-VVAAFHNLSAVLLQDVDDEVDCDVLVCGDDEEAKEVVAELAGRIDGLRA 184 (219)
T ss_pred cCCCCceecCCCCCcHHHHHHHhCCC-CCe-EeeccccCCHHHhcCCCCCCCCCEEEECCCHHHHHHHHHHHHhcCCCCc
Confidence 210 00 1123446888888862 123 56778888776554421 11234554 56677888999887 9987
Q ss_pred EecC
Q 012547 272 WDNG 275 (461)
Q Consensus 272 ~~s~ 275 (461)
+...
T Consensus 185 vd~G 188 (219)
T TIGR01915 185 LDAG 188 (219)
T ss_pred ccCC
Confidence 5443
No 38
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.51 E-value=1.4e-12 Score=135.85 Aligned_cols=212 Identities=14% Similarity=0.109 Sum_probs=139.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|.||..+|..++ . | |+|++|++++++++.+++ +. .+.+.+++.
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~-G-----~~VigvD~d~~kv~~l~~---------g~--------~~~~e~~l~----- 51 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-Q-N-----HEVVALDILPSRVAMLND---------RI--------SPIVDKEIQ----- 51 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-h-C-----CcEEEEECCHHHHHHHHc---------CC--------CCCCCcCHH-----
Confidence 69999999999999998888 5 6 999999999998876432 21 122333321
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-----------hHHHHHHHHHHHhhccCCCCE
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-----------ETKEVFEEISRYWKERITVPV 192 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-----------~~~~vl~~i~~~l~~~~~~~i 192 (461)
+++.++ ...+..+++.++++.+||+||+|||.. +++++++.+.+ +++ +++
T Consensus 52 ------~~l~~~---------~~~l~~t~~~~~~~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~---g~l 112 (388)
T PRK15057 52 ------QFLQSD---------KIHFNATLDKNEAYRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INP---YAV 112 (388)
T ss_pred ------HHHHhC---------CCcEEEecchhhhhcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCC---CCE
Confidence 111110 014566777888889999999999954 77888888877 555 565
Q ss_pred EEEEeecCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhc----cCceEEEEeCChhHHHHHHHHhcCCC
Q 012547 193 IISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYN----KEYANARICGAEKWRKPLAKFLRRPH 268 (461)
Q Consensus 193 IIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~----g~~~~~~~~~~~~~~~~l~~ll~~~g 268 (461)
|| ....+.+.+ . +.+.+.+. ...+.++|.++.+... ..+..++++++++..+.+.++|....
T Consensus 113 VV-~~STv~pgt-----t----~~l~~~~~----~~~v~~~PE~l~~G~a~~d~~~p~rvv~G~~~~~~~~~~~~l~~~~ 178 (388)
T PRK15057 113 MV-IKSTVPVGF-----T----AAMHKKYR----TENIIFSPEFLREGKALYDNLHPSRIVIGERSERAERFAALLQEGA 178 (388)
T ss_pred EE-EeeecCCch-----H----HHHHHHhh----cCcEEECcccccCCcccccccCCCEEEEEcCcHHHHHHHHHHHhhh
Confidence 54 444566552 1 33333332 1134578999876543 12445566766677777777774321
Q ss_pred c--eEE-ecCChHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhcc
Q 012547 269 F--TVW-DNGDLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAG 331 (461)
Q Consensus 269 ~--~v~-~s~Di~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g 331 (461)
+ .+. +..|+...|+.+.+-|.+ + +.--..++|+..+|+++|.|...+..
T Consensus 179 ~~~~~~~~~~~~~~AE~~Kl~~N~~-------------~-a~~Ia~~NE~a~lae~~GiD~~eV~~ 230 (388)
T PRK15057 179 IKQNIPTLFTDSTEAEAIKLFANTY-------------L-AMRVAYFNELDSYAESLGLNTRQIIE 230 (388)
T ss_pred hcCCCceeeCCHHHHHHHHHHHHHH-------------H-HHHHHHHHHHHHHHHHhCcCHHHHHH
Confidence 1 222 467888899999888872 2 22234679999999999998776543
No 39
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.51 E-value=1.4e-12 Score=137.25 Aligned_cols=218 Identities=14% Similarity=-0.000 Sum_probs=142.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
+|||+|||+|.||..+|..|++. | ++|+.|++++++++.++ .+. .+.+.+++.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~-G-----~~V~~~D~~~~~v~~l~---------~g~--------~~~~e~~l~---- 55 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASR-Q-----KQVIGVDINQHAVDTIN---------RGE--------IHIVEPDLD---- 55 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhC-C-----CEEEEEeCCHHHHHHHH---------CCC--------CCcCCCCHH----
Confidence 47999999999999999999999 8 99999999998877533 221 122223221
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc----------hhHHHHHHHHHHHhhccCCCCE
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------TETKEVFEEISRYWKERITVPV 192 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps----------~~~~~vl~~i~~~l~~~~~~~i 192 (461)
+++.+.... ..+.++++. ++||+||+|||. .++.++++.+.+++++ +++
T Consensus 56 -------~~l~~~~~~-------g~l~~~~~~----~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~---g~i 114 (415)
T PRK11064 56 -------MVVKTAVEG-------GYLRATTTP----EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKK---GDL 114 (415)
T ss_pred -------HHHHHHhhc-------Cceeeeccc----ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCC---CCE
Confidence 111110000 134555543 479999999997 5888999999999887 666
Q ss_pred EEEEeecCccccccccccCCHHHHHHhHhCC--------CCCcEEEEeCcchhHhhhc----cCceEEEEeC-ChhHHHH
Q 012547 193 IISLAKGVEAELEAVPRIITPTQMINRATGV--------PIENILYLGGPNIASEIYN----KEYANARICG-AEKWRKP 259 (461)
Q Consensus 193 IIs~tkGi~~~~~~~~~~~~~se~i~~~lg~--------~~~~v~vlsGPn~a~ev~~----g~~~~~~~~~-~~~~~~~ 259 (461)
|| ....+.+. +...+...+.+.... ....+.+...|.+..+... +.+..+ +++ +++..+.
T Consensus 115 VI-~~STv~pg-----tt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~PE~~~~G~~~~~~~~~~~v-vgG~~~~~~~~ 187 (415)
T PRK11064 115 VI-LESTSPVG-----ATEQMAEWLAEARPDLTFPQQAGEQADINIAYCPERVLPGQVMVELIKNDRV-IGGMTPVCSAR 187 (415)
T ss_pred EE-EeCCCCCC-----HHHHHHHHHHHhccCCcccccccCCCCeEEEECCCccCCCChhhhhcCCCEE-EEeCCHHHHHH
Confidence 55 44466655 233333334332110 0123556788877654322 223343 454 7777888
Q ss_pred HHHHhcCCCceEEecCChHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhh
Q 012547 260 LAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKL 329 (461)
Q Consensus 260 l~~ll~~~g~~v~~s~Di~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~ 329 (461)
++++|+.-+-.+....++...|+.+.+-|.+ + +.-...++|+..+|+.+|.|+..+
T Consensus 188 ~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~-------------~-a~~ia~~nE~~~lae~~GiD~~~v 243 (415)
T PRK11064 188 ASELYKIFLEGECVVTNSRTAEMCKLTENSF-------------R-DVNIAFANELSLICADQGINVWEL 243 (415)
T ss_pred HHHHHHHhcCCCeeeCCHHHHHHHHHHHHHH-------------H-HHHHHHHHHHHHHHHHhCCCHHHH
Confidence 8888886654555667888889998888772 1 222347899999999999987655
No 40
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.50 E-value=1.3e-11 Score=124.35 Aligned_cols=201 Identities=12% Similarity=0.075 Sum_probs=123.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|.||++||..|+++ | ++|.+|+|++++++.+.+. + ..
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~-g-----~~V~~~dr~~~~~~~l~~~--------g-------------~~-------- 45 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKR-G-----HDCVGYDHDQDAVKAMKED--------R-------------TT-------- 45 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHHHHc--------C-------------Cc--------
Confidence 6899999999999999999999 8 9999999998766542110 0 00
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
......++.+.+..+|+||++||+..++++++++.+++.+ ++++|.++++....
T Consensus 46 -----------------------~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v~~~l~~~l~~---g~ivid~st~~~~~ 99 (298)
T TIGR00872 46 -----------------------GVANLRELSQRLSAPRVVWVMVPHGIVDAVLEELAPTLEK---GDIVIDGGNSYYKD 99 (298)
T ss_pred -----------------------ccCCHHHHHhhcCCCCEEEEEcCchHHHHHHHHHHhhCCC---CCEEEECCCCCccc
Confidence 0000112333456789999999999999999999999877 68899988776544
Q ss_pred cccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCc---eEEecCChHHH
Q 012547 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHF---TVWDNGDLVTH 280 (461)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~---~v~~s~Di~gv 280 (461)
+ ....+.+.+ .|.......+..||.-+. .| + .++++++++..+.++.+|+..+- .+++..+.-.-
T Consensus 100 t------~~~~~~~~~-~g~~~vda~vsGg~~~a~---~G-~-~~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~ 167 (298)
T TIGR00872 100 S------LRRYKLLKE-KGIHLLDCGTSGGVWGRE---RG-Y-CFMIGGDGEAFARAEPLFADVAPEEQGYLYCGPCGSG 167 (298)
T ss_pred H------HHHHHHHHh-cCCeEEecCCCCCHHHHh---cC-C-eeeeCCCHHHHHHHHHHHHHhcCcCCCEEEECCccHh
Confidence 2 111111221 121111112222333222 33 3 34577888888888888775442 23444443222
Q ss_pred HHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhC--CCchhhcc
Q 012547 281 EVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLA--EEPEKLAG 331 (461)
Q Consensus 281 e~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G--~~~~t~~g 331 (461)
...+.+.|.+. ..+..++.|...++++.| .+++++..
T Consensus 168 ~~~K~~~n~l~--------------~~~~~~~aE~~~l~~~~g~~ld~~~~~~ 206 (298)
T TIGR00872 168 HFVKMVHNGIE--------------YGMMAAIAEGFEILRNSQFDFDIPEVAR 206 (298)
T ss_pred HHHHHHHHHHH--------------HHHHHHHHHHHHHHHHcCCCcCHHHHHH
Confidence 34555555422 223357788888988874 57766643
No 41
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.49 E-value=1.5e-12 Score=130.91 Aligned_cols=255 Identities=12% Similarity=0.084 Sum_probs=150.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||.|.||.+||..|.++ | ++|++|+|++. .+. +..
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~-G-----~~v~v~~~~~~-~~~--------------------------~~~------- 40 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARA-G-----HQLHVTTIGPV-ADE--------------------------LLS------- 40 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHC-C-----CeEEEEeCCHh-HHH--------------------------HHH-------
Confidence 6899999999999999999999 8 89999998763 221 000
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-hHHHHHHH---HHHHhhccCCCCEEEEEeec
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEE---ISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-~~~~vl~~---i~~~l~~~~~~~iIIs~tkG 199 (461)
.+.....++.++++.+|+||+|||.. ++++++.. +.+.+.+ ++++|.++ +
T Consensus 41 ----------------------~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~~~~~---g~ivvd~s-T 94 (292)
T PRK15059 41 ----------------------LGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLK---GKTIVDMS-S 94 (292)
T ss_pred ----------------------cCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhccCCC---CCEEEECC-C
Confidence 02233456778889999999999975 67777632 4444444 57777665 4
Q ss_pred CccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEecCChHH
Q 012547 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~g 279 (461)
+.+.. ...+.+.+.+ .|.......+..||.-++ .|..+ ++++++++..++++.+|+.-+-+++...+.-.
T Consensus 95 ~~p~~-----~~~~~~~~~~-~G~~~vdaPVsGg~~~a~---~g~l~-~~~gG~~~~~~~~~p~l~~~g~~~~~~G~~G~ 164 (292)
T PRK15059 95 ISPIE-----TKRFARQVNE-LGGDYLDAPVSGGEIGAR---EGTLS-IMVGGDEAVFERVKPLFELLGKNITLVGGNGD 164 (292)
T ss_pred CCHHH-----HHHHHHHHHH-cCCCEEEecCCCCHHHHh---cCcEE-EEEcCCHHHHHHHHHHHHHHcCCcEEeCCccH
Confidence 55441 2222233322 232111111222222221 33322 24577888889999999887766666555422
Q ss_pred HHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhccChhhhhhhhccccchhHH---HHHHhcC
Q 012547 280 HEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTLLKGRNAWY---GQELAKG 356 (461)
Q Consensus 280 ve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~glgDl~~T~~~sRN~~~---G~~l~~g 356 (461)
-...+++-|.+. .....++.|...++++.|.+++++.+ .+... ..+++.+ +..+.++
T Consensus 165 g~~~Kl~~N~l~--------------~~~~~a~~Ea~~la~~~Gld~~~~~~-----~l~~~-~~~s~~~~~~~~~~~~~ 224 (292)
T PRK15059 165 GQTCKVANQIIV--------------ALNIEAVSEALLFASKAGADPVRVRQ-----ALMGG-FASSRILEVHGERMIKR 224 (292)
T ss_pred HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHcCCCHHHHHH-----HHHcC-cccCHHHHhhchhhhcC
Confidence 334444445531 22235789999999999999988753 22111 1111111 1111111
Q ss_pred CChhhHhhhhcCCCcc-chHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHH
Q 012547 357 RLTLDLGDSIKGKGMI-QGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKIL 417 (461)
Q Consensus 357 ~~~~~~~~~~~~~~~v-EG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il 417 (461)
. +...-++ -..+..+.+.+++++.|+ + +|+.+.+.+++
T Consensus 225 ~--------~~~~f~l~~~~KDl~l~~~~a~~~g~--------------~-~p~~~~~~~~~ 263 (292)
T PRK15059 225 T--------FNPGFKIALHQKDLNLALQSAKALAL--------------N-LPNTATCQELF 263 (292)
T ss_pred C--------CCCCCchHHHHHHHHHHHHHHHHcCC--------------C-ChHHHHHHHHH
Confidence 0 0000012 224556678899999995 6 79988887766
No 42
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.48 E-value=1.2e-11 Score=124.54 Aligned_cols=198 Identities=14% Similarity=0.123 Sum_probs=129.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|.||+++|..|+++ | ++|.+|+|++++++.+..
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~-g-----~~v~v~dr~~~~~~~~~~--------------------------------- 41 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRG-G-----HEVVGYDRNPEAVEALAE--------------------------------- 41 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHC-C-----CeEEEEECCHHHHHHHHH---------------------------------
Confidence 6899999999999999999999 8 999999999876543110
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcC---CCEEEEcCCch-hHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~---aDiIIiaVps~-~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
.+....++++++++. +|+||+++|.. .++++++.+.+.+++ ++++|.++++
T Consensus 42 ----------------------~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~~l~~~l~~---g~ivid~st~ 96 (301)
T PRK09599 42 ----------------------EGATGADSLEELVAKLPAPRVVWLMVPAGEITDATIDELAPLLSP---GDIVIDGGNS 96 (301)
T ss_pred ----------------------CCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHHHHHhhCCC---CCEEEeCCCC
Confidence 023344566666554 69999999987 899999999888876 6788888765
Q ss_pred CccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCc----eEEecC
Q 012547 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHF----TVWDNG 275 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~----~v~~s~ 275 (461)
-... ...+.+.+++ .|.......+..||.-+. .| . .++++++++..+.++.+|..-+- +++...
T Consensus 97 ~~~~------~~~~~~~~~~-~g~~~~dapvsG~~~~a~---~g-~-~~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~~G 164 (301)
T PRK09599 97 YYKD------DIRRAELLAE-KGIHFVDVGTSGGVWGLE---RG-Y-CLMIGGDKEAVERLEPIFKALAPRAEDGYLHAG 164 (301)
T ss_pred ChhH------HHHHHHHHHH-cCCEEEeCCCCcCHHHHh---cC-C-eEEecCCHHHHHHHHHHHHHHcccccCCeEeEC
Confidence 4432 1122222222 131111112223333322 34 3 34578888888888888876665 455556
Q ss_pred ChHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHH--hCCCchhhcc
Q 012547 276 DLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHL--LAEEPEKLAG 331 (461)
Q Consensus 276 Di~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a--~G~~~~t~~g 331 (461)
++=.-...+.+.|.+. .....++.|...++++ .|.+++++..
T Consensus 165 ~~G~g~~~Kl~~n~l~--------------~~~~~~~aEa~~l~~~~~~gld~~~~~~ 208 (301)
T PRK09599 165 PVGAGHFVKMVHNGIE--------------YGMMQAYAEGFELLEASRFDLDLAAVAE 208 (301)
T ss_pred CCcHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 5422344455555421 2233578899999999 8998887654
No 43
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.47 E-value=4e-12 Score=135.50 Aligned_cols=222 Identities=15% Similarity=0.093 Sum_probs=145.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
+|||+|||+|++|..+|..||+. |. +++|+.++.++++++.++... .+.+.+++
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~-g~---g~~V~gvD~~~~~v~~l~~g~-----------------~~~~e~gl----- 54 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALK-CP---DIEVVVVDISVPRIDAWNSDQ-----------------LPIYEPGL----- 54 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc-CC---CCeEEEEECCHHHHHHHHcCC-----------------CccCCCCH-----
Confidence 48999999999999999999987 51 267999999999888754322 11222222
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCC--ch-------------hHHHHHHHHHHHhhcc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP--ST-------------ETKEVFEEISRYWKER 187 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVp--s~-------------~~~~vl~~i~~~l~~~ 187 (461)
+|++.++. ..++.+++|.++++++||++|+||| .. ++++++++|.+++++
T Consensus 55 ------~ell~~~~--------~~~l~~t~~~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~- 119 (473)
T PLN02353 55 ------DEVVKQCR--------GKNLFFSTDVEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKS- 119 (473)
T ss_pred ------HHHHHHhh--------cCCEEEEcCHHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCC-
Confidence 12332211 0247899999889999999999995 32 789999999999986
Q ss_pred CCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhcc----CceEEEEeC-Ch----hHHH
Q 012547 188 ITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNK----EYANARICG-AE----KWRK 258 (461)
Q Consensus 188 ~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g----~~~~~~~~~-~~----~~~~ 258 (461)
+++|| ....+.+. +...+...+.+... ...+.+.+.|.+..+...- .+..+++++ ++ +..+
T Consensus 120 --~~lVv-~~STvp~G-----tt~~~~~~l~~~~~--g~~f~v~~~PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~ 189 (473)
T PLN02353 120 --DKIVV-EKSTVPVK-----TAEAIEKILTHNSK--GINFQILSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQ 189 (473)
T ss_pred --CcEEE-EeCCCCCC-----hHHHHHHHHHhhCC--CCCeEEEECCCccCCCCcccccCCCCEEEEccCCchhhHHHHH
Confidence 55443 44344444 23333333433211 2356788999998765532 244445544 22 2467
Q ss_pred HHHHHhcCCC-ceEEecCChHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhh
Q 012547 259 PLAKFLRRPH-FTVWDNGDLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKL 329 (461)
Q Consensus 259 ~l~~ll~~~g-~~v~~s~Di~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~ 329 (461)
.++++++.-. -..+...++...|+.+.+-|.+ ++.-+ ..++||..+|+++|+|...+
T Consensus 190 ~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~-------------ra~~I-af~NEla~lce~~giD~~eV 247 (473)
T PLN02353 190 ALKDVYAHWVPEERIITTNLWSAELSKLAANAF-------------LAQRI-SSVNAMSALCEATGADVSQV 247 (473)
T ss_pred HHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHH-------------HHHHH-HHHHHHHHHHHHhCCCHHHH
Confidence 7777776432 1345678899999999888873 21222 35689999999999876543
No 44
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.45 E-value=3.9e-12 Score=125.20 Aligned_cols=190 Identities=15% Similarity=0.078 Sum_probs=127.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|+||.+++..|.+. |+ .. ..+.+|+|+.+..+.+.. ..+
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~-g~-~~-~~i~v~~r~~~~~~~l~~----------------------~~~-------- 47 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTS-PA-DV-SEIIVSPRNAQIAARLAE----------------------RFP-------- 47 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhC-CC-Ch-heEEEECCCHHHHHHHHH----------------------HcC--------
Confidence 6899999999999999999987 72 11 356889998765442100 000
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
....++|.+++++++|+||+|||++.+.++++++. +.+ ++++||+..|+..+
T Consensus 48 -----------------------~~~~~~~~~~~~~~aDvVilav~p~~~~~vl~~l~--~~~---~~~vis~~ag~~~~ 99 (258)
T PRK06476 48 -----------------------KVRIAKDNQAVVDRSDVVFLAVRPQIAEEVLRALR--FRP---GQTVISVIAATDRA 99 (258)
T ss_pred -----------------------CceEeCCHHHHHHhCCEEEEEeCHHHHHHHHHHhc--cCC---CCEEEEECCCCCHH
Confidence 23455778888889999999999999999998873 344 67999988887654
Q ss_pred cccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEecCChHHHHHH
Q 012547 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVM 283 (461)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~gve~~ 283 (461)
.+++.++.. ...++.+|+++.....+... +..+. +.++++|+..|-.++..+.
T Consensus 100 ------------~l~~~~~~~--~~~~r~~P~~~~a~~~g~t~---~~~~~---~~~~~l~~~lG~~~~~~~e------- 152 (258)
T PRK06476 100 ------------ALLEWIGHD--VKLVRAIPLPFVAERKGVTA---IYPPD---PFVAALFDALGTAVECDSE------- 152 (258)
T ss_pred ------------HHHHHhCCC--CCEEEECCCChhhhCCCCeE---ecCCH---HHHHHHHHhcCCcEEECCh-------
Confidence 477766531 23578999988765554322 22222 4778888888877665422
Q ss_pred HHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhc
Q 012547 284 GGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLA 330 (461)
Q Consensus 284 galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~ 330 (461)
-.+|.|..++++. +.+...+.|+...++..|.+++...
T Consensus 153 -~~~d~~~a~~s~~--------a~~~~~~~~~~~~~~~~Gl~~~~a~ 190 (258)
T PRK06476 153 -EEYDLLAAASALM--------ATYFGILETATGWLEEQGLKRQKAR 190 (258)
T ss_pred -HhccceeehhccH--------HHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 1223332222221 2222478899999999999987654
No 45
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.44 E-value=8.3e-13 Score=110.15 Aligned_cols=94 Identities=29% Similarity=0.371 Sum_probs=72.5
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEE-ecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIW-RRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~-~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
||+|||+|+||++++..|..+ |+ .+ ++|.++ +|++++++++..+ +
T Consensus 1 kI~iIG~G~mg~al~~~l~~~-g~-~~-~~v~~~~~r~~~~~~~~~~~---------------------~---------- 46 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS-GI-KP-HEVIIVSSRSPEKAAELAKE---------------------Y---------- 46 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-TS--G-GEEEEEEESSHHHHHHHHHH---------------------C----------
T ss_pred CEEEECCCHHHHHHHHHHHHC-CC-Cc-eeEEeeccCcHHHHHHHHHh---------------------h----------
Confidence 799999999999999999998 75 33 899966 8998766542110 0
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEec-CHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVT-NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~-dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
++.++. +..++++++|+||+|||++++.++++++ +...+ ++++||+++|
T Consensus 47 -----------------------~~~~~~~~~~~~~~~advvilav~p~~~~~v~~~i-~~~~~---~~~vis~~ag 96 (96)
T PF03807_consen 47 -----------------------GVQATADDNEEAAQEADVVILAVKPQQLPEVLSEI-PHLLK---GKLVISIAAG 96 (96)
T ss_dssp -----------------------TTEEESEEHHHHHHHTSEEEE-S-GGGHHHHHHHH-HHHHT---TSEEEEESTT
T ss_pred -----------------------ccccccCChHHhhccCCEEEEEECHHHHHHHHHHH-hhccC---CCEEEEeCCC
Confidence 223333 6788899999999999999999999999 66665 6899999987
No 46
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.43 E-value=7e-12 Score=126.56 Aligned_cols=205 Identities=15% Similarity=0.164 Sum_probs=130.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
..+||+|||+|.||+++|..|+.+ | ++|++|+++++.++.+++. +.... ..+.+.
T Consensus 3 ~~~~I~vIGaG~mG~~iA~~l~~~-g-----~~V~~~d~~~~~~~~~~~~-----~~~~~---------~~~~~~----- 57 (311)
T PRK06130 3 PIQNLAIIGAGTMGSGIAALFARK-G-----LQVVLIDVMEGALERARGV-----IERAL---------GVYAPL----- 57 (311)
T ss_pred CccEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEECCHHHHHHHHHH-----HHHHH---------HHhhhc-----
Confidence 347899999999999999999998 8 8999999998877654321 00000 000000
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh--HHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~--~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
.. . +.....+..++|+++++++||+||+|||++. ...++.++.+++++ +++|+|.+.|
T Consensus 58 ---~~------~--------~~~~~~i~~~~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~---~~ii~s~tsg 117 (311)
T PRK06130 58 ---GI------A--------SAGMGRIRMEAGLAAAVSGADLVIEAVPEKLELKRDVFARLDGLCDP---DTIFATNTSG 117 (311)
T ss_pred ---cc------H--------HHHhhceEEeCCHHHHhccCCEEEEeccCcHHHHHHHHHHHHHhCCC---CcEEEECCCC
Confidence 00 0 0000146677888888899999999999874 78899999988776 6777888888
Q ss_pred CccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeC--ChhHHHHHHHHhcCCCceEEec-CC
Q 012547 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWDN-GD 276 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~--~~~~~~~l~~ll~~~g~~v~~s-~D 276 (461)
+... .+.+.++.+ .+ ++...|+.+..... ...++.+. +++..+.+.++|+..|..++.. .|
T Consensus 118 ~~~~------------~l~~~~~~~-~~-~ig~h~~~p~~~~~--l~~i~~g~~t~~~~~~~v~~l~~~~G~~~v~~~~d 181 (311)
T PRK06130 118 LPIT------------AIAQAVTRP-ER-FVGTHFFTPADVIP--LVEVVRGDKTSPQTVATTMALLRSIGKRPVLVKKD 181 (311)
T ss_pred CCHH------------HHHhhcCCc-cc-EEEEccCCCCccCc--eEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 7643 355555422 23 34455666554332 22222222 5678899999999999876655 47
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhh
Q 012547 277 LVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKL 329 (461)
Q Consensus 277 i~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~ 329 (461)
.-|..+. |+ +...++|...+++..|.+++.+
T Consensus 182 ~~G~i~n----r~------------------~~~~~~Ea~~l~~~g~~~~~~i 212 (311)
T PRK06130 182 IPGFIAN----RI------------------QHALAREAISLLEKGVASAEDI 212 (311)
T ss_pred CCCcHHH----HH------------------HHHHHHHHHHHHHcCCCCHHHH
Confidence 6554221 11 2234667667766666666543
No 47
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.43 E-value=6.2e-13 Score=122.28 Aligned_cols=152 Identities=20% Similarity=0.259 Sum_probs=99.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
||||+|||.|.||+.||..|+++ | ++|++|+|+++.++++.+
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~-g-----~~v~~~d~~~~~~~~~~~-------------------------------- 42 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKA-G-----YEVTVYDRSPEKAEALAE-------------------------------- 42 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHT-T-----TEEEEEESSHHHHHHHHH--------------------------------
T ss_pred CCEEEEEchHHHHHHHHHHHHhc-C-----CeEEeeccchhhhhhhHH--------------------------------
Confidence 58999999999999999999999 8 999999999876553110
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHHHH--HHHHhhccCCCCEEEEEeec
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFEE--ISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl~~--i~~~l~~~~~~~iIIs~tkG 199 (461)
.......+++++++.+|+||+|+|. .++++++.. +.+.+.+ ++++|.++ .
T Consensus 43 -----------------------~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~~~l~~---g~iiid~s-T 95 (163)
T PF03446_consen 43 -----------------------AGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENILAGLRP---GKIIIDMS-T 95 (163)
T ss_dssp -----------------------TTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHGGGS-T---TEEEEE-S-S
T ss_pred -----------------------hhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHhhcccc---ceEEEecC-C
Confidence 0356678899999999999999997 789999998 8888876 67777655 4
Q ss_pred CccccccccccCCHHHHHHhHh---CCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEE
Q 012547 200 VEAELEAVPRIITPTQMINRAT---GVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVW 272 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~l---g~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~ 272 (461)
+.++. . ..+.+.+ |.......+..||.-+. .|..+ ++++++++..++++.+|+.-+-+++
T Consensus 96 ~~p~~-----~----~~~~~~~~~~g~~~vdapV~Gg~~~a~---~g~l~-~~~gG~~~~~~~~~~~l~~~~~~v~ 158 (163)
T PF03446_consen 96 ISPET-----S----RELAERLAAKGVRYVDAPVSGGPPGAE---EGTLT-IMVGGDEEAFERVRPLLEAMGKNVY 158 (163)
T ss_dssp --HHH-----H----HHHHHHHHHTTEEEEEEEEESHHHHHH---HTTEE-EEEES-HHHHHHHHHHHHHHEEEEE
T ss_pred cchhh-----h----hhhhhhhhhccceeeeeeeeccccccc---ccceE-EEccCCHHHHHHHHHHHHHHhCCce
Confidence 44441 1 2233332 21111223344444333 34322 3567888888899998876665554
No 48
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.40 E-value=1.5e-11 Score=131.49 Aligned_cols=210 Identities=17% Similarity=0.077 Sum_probs=134.7
Q ss_pred CCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchh
Q 012547 38 KAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV 117 (461)
Q Consensus 38 ~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~ 117 (461)
|.+..+++|+|||.|.||+.||..|+++ | ++|++|+|+.++++.+.+. .. ..+.
T Consensus 1 ~~~~~~~~IG~IGLG~MG~~mA~nL~~~-G-----~~V~V~NRt~~k~~~l~~~--------~~------------~~Ga 54 (493)
T PLN02350 1 MASAALSRIGLAGLAVMGQNLALNIAEK-G-----FPISVYNRTTSKVDETVER--------AK------------KEGN 54 (493)
T ss_pred CCCCCCCCEEEEeeHHHHHHHHHHHHhC-C-----CeEEEECCCHHHHHHHHHh--------hh------------hcCC
Confidence 4567788999999999999999999999 8 9999999998876642210 00 0000
Q ss_pred hhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcC---CCEEEEcCCc-hhHHHHHHHHHHHhhccCCCCEE
Q 012547 118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPS-TETKEVFEEISRYWKERITVPVI 193 (461)
Q Consensus 118 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~---aDiIIiaVps-~~~~~vl~~i~~~l~~~~~~~iI 193 (461)
..+....+++++++. +|+||++||. ..++++++.+.+.+.+ +.++
T Consensus 55 ----------------------------~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~~Vi~gl~~~l~~---G~ii 103 (493)
T PLN02350 55 ----------------------------LPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVDQTIKALSEYMEP---GDCI 103 (493)
T ss_pred ----------------------------cccccCCCHHHHHhcCCCCCEEEEECCCcHHHHHHHHHHHhhcCC---CCEE
Confidence 022345677777765 9999999996 5789999999998877 6788
Q ss_pred EEEeecCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCce---
Q 012547 194 ISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFT--- 270 (461)
Q Consensus 194 Is~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~--- 270 (461)
|.+++.-...+ ....+.+.+ .|.......+..||.-|. .| + .++++++++..++++.+|+.-+-+
T Consensus 104 ID~sT~~~~~t------~~~~~~l~~-~Gi~fldapVSGG~~gA~---~G-~-~im~GG~~~a~~~v~pvL~~ia~k~~~ 171 (493)
T PLN02350 104 IDGGNEWYENT------ERRIKEAAE-KGLLYLGMGVSGGEEGAR---NG-P-SLMPGGSFEAYKNIEDILEKVAAQVDD 171 (493)
T ss_pred EECCCCCHHHH------HHHHHHHHH-cCCeEEeCCCcCCHHHhc---CC-C-eEEecCCHHHHHHHHHHHHHHhhhcCC
Confidence 88775543331 112222222 132111123444555443 34 3 457788888889999888765522
Q ss_pred ---EEecCChHHH-HHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHH-hCCCchhhcc
Q 012547 271 ---VWDNGDLVTH-EVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHL-LAEEPEKLAG 331 (461)
Q Consensus 271 ---v~~s~Di~gv-e~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a-~G~~~~t~~g 331 (461)
+.+..+. |. ...+.+-|. -...+..++.|...+++. +|.+++.+..
T Consensus 172 ~~~v~~vG~~-GaG~~vKlv~N~--------------i~~~~m~~iaEA~~l~~~~~Gld~~~l~~ 222 (493)
T PLN02350 172 GPCVTYIGPG-GAGNFVKMVHNG--------------IEYGDMQLISEAYDVLKSVGGLSNEELAE 222 (493)
T ss_pred CCcEEEeCCc-CHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 4444442 32 223333332 223445688999999988 6999877643
No 49
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.38 E-value=9.7e-11 Score=120.21 Aligned_cols=205 Identities=13% Similarity=0.091 Sum_probs=136.3
Q ss_pred ceEEEECccH--------------------HHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhh
Q 012547 44 LRIVGVGAGA--------------------WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDV 103 (461)
Q Consensus 44 mkI~IIGaGa--------------------mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~ 103 (461)
|||+|.|+|+ -|++||..|+++ | |+|++|+|+++..+. +++ +
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~a-G-----~~V~v~Dr~~~~l~~---~~~----~----- 62 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEA-G-----HDVVLAEPNRSILSE---ELW----K----- 62 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhC-C-----CeEEEEECCHHHhhH---HHH----H-----
Confidence 7899999886 388999999999 8 999999998864431 000 0
Q ss_pred HHhhhhcccccchhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh-HHHHHHHHHH
Q 012547 104 LRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVFEEISR 182 (461)
Q Consensus 104 ~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~-~~~vl~~i~~ 182 (461)
.+.. .++.+++|..+++++||+||+|+|+.. ++++++.+.+
T Consensus 63 ---------~l~~-----------------------------~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~L~~ 104 (342)
T PRK12557 63 ---------KVED-----------------------------AGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIAKNILP 104 (342)
T ss_pred ---------HHHH-----------------------------CCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHHHHHHh
Confidence 0100 145667788888899999999999988 9999999999
Q ss_pred HhhccCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCC--------CCcEEEEeCcchhHhhhccCceEEEEeCCh
Q 012547 183 YWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVP--------IENILYLGGPNIASEIYNKEYANARICGAE 254 (461)
Q Consensus 183 ~l~~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~--------~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~ 254 (461)
.+.+ +++|++++++ .+. .+++.+.+.++.+ .++..+..+|+....+..+.++.....+++
T Consensus 105 ~L~~---g~IVId~ST~-~~~--------~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g~l~Vm~gg~t~~~~~~~~ 172 (342)
T PRK12557 105 HLPE---NAVICNTCTV-SPV--------VLYYSLEGELRTKRKDVGISSMHPAAVPGTPQHGHYVIAGKTTNGTELATE 172 (342)
T ss_pred hCCC---CCEEEEecCC-CHH--------HHHHHHHHHhcccccccCeeecCCccccccccchheEEeCCCcccccCCCH
Confidence 8876 6788877755 222 1234455544311 122233445555555554443322334467
Q ss_pred hHHHHHHHHhcCCCceEEecCChHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhcc
Q 012547 255 KWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAG 331 (461)
Q Consensus 255 ~~~~~l~~ll~~~g~~v~~s~Di~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g 331 (461)
+..++++++|+..|.+++..+ . | .+.+.|-+ .|.-.+....++.|...+++++|.++..+..
T Consensus 173 e~~e~v~~LL~a~G~~v~~~~-~-g--~~~~vk~~-----------~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~ 234 (342)
T PRK12557 173 EQIEKCVELAESIGKEPYVVP-A-D--VVSAVADM-----------GSLVTAVALSGVLDYYSVGTKIIKAPKEMIE 234 (342)
T ss_pred HHHHHHHHHHHHcCCEEEEeC-H-H--HHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 788999999999999887666 2 3 23333322 2223344456888999999999988876654
No 50
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.38 E-value=2.4e-11 Score=130.52 Aligned_cols=172 Identities=18% Similarity=0.218 Sum_probs=115.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
.|||+|||+|.||++||..|+.+ | ++|++|+++++.++.+.. .+.... .+..++...
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~-G-----~~V~v~D~~~~~~~~~~~-----~~~~~~-------~~~~~l~~~----- 60 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLA-G-----IDVAVFDPHPEAERIIGE-----VLANAE-------RAYAMLTDA----- 60 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-----HHHHHH-------HHHhhhccc-----
Confidence 47999999999999999999999 8 999999999887664321 111000 011112110
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh--HHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~--~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
.+. . ..++.+++|+++++++||+||.|+|++. .+.++.++.+++++ +++|.|.+.|+
T Consensus 61 --~~~-----~-----------~g~i~~~~~~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~---~~iI~SsTsgi 119 (495)
T PRK07531 61 --PLP-----P-----------EGRLTFCASLAEAVAGADWIQESVPERLDLKRRVLAEIDAAARP---DALIGSSTSGF 119 (495)
T ss_pred --hhh-----h-----------hhceEeeCCHHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCC---CcEEEEcCCCC
Confidence 000 0 0136788899999999999999999874 66678888888776 67888888887
Q ss_pred ccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeC---ChhHHHHHHHHhcCCCceEEecC
Q 012547 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG---AEKWRKPLAKFLRRPHFTVWDNG 275 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~---~~~~~~~l~~ll~~~g~~v~~s~ 275 (461)
... + +.+.+..+ ...++..|+.+.... ... .++++ +++..+.++++|...|..+....
T Consensus 120 ~~s-----------~-l~~~~~~~--~r~~~~hP~nP~~~~--~Lv-evv~g~~t~~e~~~~~~~~~~~lG~~~v~~~ 180 (495)
T PRK07531 120 LPS-----------D-LQEGMTHP--ERLFVAHPYNPVYLL--PLV-ELVGGGKTSPETIRRAKEILREIGMKPVHIA 180 (495)
T ss_pred CHH-----------H-HHhhcCCc--ceEEEEecCCCcccC--ceE-EEcCCCCCCHHHHHHHHHHHHHcCCEEEeec
Confidence 654 2 45555432 235667777654322 122 23333 36788999999999887766554
No 51
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=99.36 E-value=7.1e-12 Score=117.96 Aligned_cols=169 Identities=18% Similarity=0.219 Sum_probs=100.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||.|.+|..+|..||+. | |+|+.++.+++.++.++ ++. .+.+.+++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~-G-----~~V~g~D~~~~~v~~l~---------~g~--------~p~~E~~l~----- 52 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK-G-----HQVIGVDIDEEKVEALN---------NGE--------LPIYEPGLD----- 52 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT-T-----SEEEEE-S-HHHHHHHH---------TTS--------SSS-CTTHH-----
T ss_pred CEEEEECCCcchHHHHHHHHhC-C-----CEEEEEeCChHHHHHHh---------hcc--------ccccccchh-----
Confidence 8999999999999999999999 8 99999999998877643 332 233444332
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc----------hhHHHHHHHHHHHhhccCCCCEE
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------TETKEVFEEISRYWKERITVPVI 193 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps----------~~~~~vl~~i~~~l~~~~~~~iI 193 (461)
+++.+.... .++.+++|.++++.++|++|+|||. .++.+++++|.+++++ +++
T Consensus 53 ------~ll~~~~~~-------~~l~~t~~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~---~~l- 115 (185)
T PF03721_consen 53 ------ELLKENVSA-------GRLRATTDIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRP---GDL- 115 (185)
T ss_dssp ------HHHHHHHHT-------TSEEEESEHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCS---CEE-
T ss_pred ------hhhcccccc-------ccchhhhhhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhh---cce-
Confidence 344433211 2689999999999999999999985 2689999999999887 454
Q ss_pred EEEeecCccccccccccC-CHHHHHHhHhCCCCCcEEEEeCcchhHhhhc----cCceEEEEeCChhH-HHHHHHH
Q 012547 194 ISLAKGVEAELEAVPRII-TPTQMINRATGVPIENILYLGGPNIASEIYN----KEYANARICGAEKW-RKPLAKF 263 (461)
Q Consensus 194 Is~tkGi~~~~~~~~~~~-~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~----g~~~~~~~~~~~~~-~~~l~~l 263 (461)
|.+-..+.+.+ .. ....++++..+.. ..+.+...|.+..+... ..+..++.+.+++. .+.++++
T Consensus 116 vV~~STvppGt-----t~~~~~~ile~~~~~~-~~f~la~~PErl~~G~a~~d~~~~~rvV~G~~~~~~~~~~~~l 185 (185)
T PF03721_consen 116 VVIESTVPPGT-----TEELLKPILEKRSGKK-EDFHLAYSPERLREGRAIEDFRNPPRVVGGCDDESAEERLKEL 185 (185)
T ss_dssp EEESSSSSTTH-----HHHHHHHHHHHHCCTT-TCEEEEE------TTSHHHHHHSSSEEEEEESSHHHHHHHHHH
T ss_pred EEEccEEEEee-----ehHhhhhhhhhhcccc-cCCeEEECCCccCCCCcchhccCCCEEEEeCCcHHHHHHHhcC
Confidence 44555666652 22 3334444443322 45778888998775442 23445555554443 3455543
No 52
>PLN02858 fructose-bisphosphate aldolase
Probab=99.36 E-value=3.3e-11 Score=142.35 Aligned_cols=278 Identities=12% Similarity=0.058 Sum_probs=167.4
Q ss_pred CCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchh
Q 012547 38 KAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV 117 (461)
Q Consensus 38 ~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~ 117 (461)
|.....++|+|||.|+||.+||..|+++ | ++|.+|+|+++.++.+..
T Consensus 319 ~~~~~~~~IGfIGlG~MG~~mA~~L~~~-G-----~~V~v~dr~~~~~~~l~~--------------------------- 365 (1378)
T PLN02858 319 MQAKPVKRIGFIGLGAMGFGMASHLLKS-N-----FSVCGYDVYKPTLVRFEN--------------------------- 365 (1378)
T ss_pred ccccCCCeEEEECchHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHHHHH---------------------------
Confidence 3444568999999999999999999999 8 999999999875543110
Q ss_pred hhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCC-chhHHHHHH---HHHHHhhccCCCCEE
Q 012547 118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVFE---EISRYWKERITVPVI 193 (461)
Q Consensus 118 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVp-s~~~~~vl~---~i~~~l~~~~~~~iI 193 (461)
.......++.+++++||+||+||| +.++++++. .+.+.+.+ ++++
T Consensus 366 ----------------------------~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~---g~iv 414 (1378)
T PLN02858 366 ----------------------------AGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLGAVSALPA---GASI 414 (1378)
T ss_pred ----------------------------cCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhhHHhcCCC---CCEE
Confidence 012234678888999999999999 778888873 35555555 6777
Q ss_pred EEEeecCccccccccccCCHHHHHHhH-hCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEE
Q 012547 194 ISLAKGVEAELEAVPRIITPTQMINRA-TGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVW 272 (461)
Q Consensus 194 Is~tkGi~~~~~~~~~~~~~se~i~~~-lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~ 272 (461)
|.++ .+.+.. ...+.+.+.+. .|.......+..||.-+. .|..+ ++++++++..++++.+|+.-+-+++
T Consensus 415 Vd~S-TvsP~~-----~~~la~~l~~~g~g~~~lDAPVsGg~~~A~---~G~L~-imvgG~~~~~~~~~plL~~lg~~i~ 484 (1378)
T PLN02858 415 VLSS-TVSPGF-----VIQLERRLENEGRDIKLVDAPVSGGVKRAA---MGTLT-IMASGTDEALKSAGSVLSALSEKLY 484 (1378)
T ss_pred EECC-CCCHHH-----HHHHHHHHHhhCCCcEEEEccCCCChhhhh---cCCce-EEEECCHHHHHHHHHHHHHHhCcEE
Confidence 7665 444441 22223333321 111111112334444332 34333 3567788888899999987776666
Q ss_pred e-cCChHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhccC---hhhhhhhhccccchhH
Q 012547 273 D-NGDLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP---LLADTYVTLLKGRNAW 348 (461)
Q Consensus 273 ~-s~Di~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~---glgDl~~T~~~sRN~~ 348 (461)
+ ..++-.....+++-|.+. .....++.|+..++++.|.+++++... +.+..... +|+
T Consensus 485 ~~~g~~G~a~~~KL~nN~l~--------------~~~~aa~aEal~la~k~Gld~~~l~evl~~s~g~s~~~----~~~- 545 (1378)
T PLN02858 485 VIKGGCGAGSGVKMVNQLLA--------------GVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSWMF----ENR- 545 (1378)
T ss_pred EeCCCCCHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccChhh----hhc-
Confidence 5 556544556666666631 223457899999999999999887642 22221100 111
Q ss_pred HHHHHhcCCChhhHhhhhcCCCcc-chHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHh-------cC
Q 012547 349 YGQELAKGRLTLDLGDSIKGKGMI-QGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILI-------MR 420 (461)
Q Consensus 349 ~G~~l~~g~~~~~~~~~~~~~~~v-EG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~-------~~ 420 (461)
.-..+.+..+. .-++ -.....+.+.+++++.|+ + +|+.+.+.+++. ++
T Consensus 546 ~~~~l~~d~~~---------~f~l~l~~KDl~l~~~~a~~~g~--------------~-~pl~~~~~~~~~~a~~~G~g~ 601 (1378)
T PLN02858 546 VPHMLDNDYTP---------YSALDIFVKDLGIVSREGSSRKI--------------P-LHLSTVAHQLFLAGSASGWGR 601 (1378)
T ss_pred cchhhcCCCCC---------CchhHHHHHHHHHHHHHHHHcCC--------------C-ChHHHHHHHHHHHHHhcCCCc
Confidence 00111111110 0011 223455678888999995 6 788888777662 23
Q ss_pred CCHHHHHHHHHhc
Q 012547 421 ESPIQAILEALRD 433 (461)
Q Consensus 421 ~~~~~~~~~~l~~ 433 (461)
.+ ..++.+++.+
T Consensus 602 ~D-~sav~~~~~~ 613 (1378)
T PLN02858 602 ID-DAAVVKVYET 613 (1378)
T ss_pred cC-hHHHHHHHHH
Confidence 33 4455566654
No 53
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.35 E-value=1.6e-11 Score=124.57 Aligned_cols=158 Identities=17% Similarity=0.141 Sum_probs=111.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch-hhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR-SVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~-~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.+||+|||+|+||.++|..|.++ | ++|.++.++.. ..+. ...
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~s-G-----~~Viv~~~~~~~~~~~--------------------------a~~----- 45 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRDS-G-----LNVIVGLRKGGASWKK--------------------------ATE----- 45 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHC-C-----CeEEEEECcChhhHHH--------------------------HHH-----
Confidence 36899999999999999999998 7 78877666532 1111 000
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-hHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
.++.. .+..+++++||+|++++|++ +...+++++.+.+++ + .+||++.|+
T Consensus 46 ------------------------~Gv~~-~s~~ea~~~ADiVvLaVpp~~~~~~v~~ei~~~l~~---g-~iVs~aaG~ 96 (314)
T TIGR00465 46 ------------------------DGFKV-GTVEEAIPQADLIMNLLPDEVQHEVYEAEIQPLLKE---G-KTLGFSHGF 96 (314)
T ss_pred ------------------------CCCEE-CCHHHHHhcCCEEEEeCCcHhHHHHHHHHHHhhCCC---C-cEEEEeCCc
Confidence 02333 34777889999999999998 777778889988875 4 489999999
Q ss_pred ccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHh-h------hccCceEEEEeC--ChhHHHHHHHHhcCCCce-
Q 012547 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE-I------YNKEYANARICG--AEKWRKPLAKFLRRPHFT- 270 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~e-v------~~g~~~~~~~~~--~~~~~~~l~~ll~~~g~~- 270 (461)
... .++..++. ..+ +++.+||.+.. + +.|.++++.+.. +.+..+.+..+|+..|..
T Consensus 97 ~i~------------~~~~~~~~-~~~-VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~~~~~~iG~~~ 162 (314)
T TIGR00465 97 NIH------------FVQIVPPK-DVD-VVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAIALAYAKAIGGGR 162 (314)
T ss_pred cHh------------hccccCCC-CCc-EEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCc
Confidence 875 24555542 123 68999999998 4 888776643432 455667788888877755
Q ss_pred ------E---EecCChHHH
Q 012547 271 ------V---WDNGDLVTH 280 (461)
Q Consensus 271 ------v---~~s~Di~gv 280 (461)
. ++.+|..+.
T Consensus 163 ~~~~~t~f~~e~~edl~~~ 181 (314)
T TIGR00465 163 AGVLETTFKEETESDLFGE 181 (314)
T ss_pred cceeechhHhhhhHHhcCc
Confidence 2 555666553
No 54
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.35 E-value=2.3e-11 Score=121.88 Aligned_cols=192 Identities=16% Similarity=0.135 Sum_probs=117.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
.||+|||+|.||+++|..|+.+ | ++|++|+++++.++...+. +++........... ......
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-G-----~~V~l~d~~~~~l~~~~~~-----i~~~~~~l~~~~~~-g~~~~~------ 65 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-G-----YDVTIVDVSEEILKNAMEL-----IESGPYGLRNLVEK-GKMSED------ 65 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-C-----CeEEEEeCCHHHHHHHHHH-----HHhhhhhHHHHHHc-CCCCHH------
Confidence 5899999999999999999999 8 8999999999877643211 11100000000000 000000
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh--HHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~--~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
.. ++ ...++.+++|. +++++||+||+|+|++. .+++++++.+++++ +++++|.++|+.
T Consensus 66 -~~--~~-------------~~~~i~~~~~~-~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~---~~il~S~tsg~~ 125 (291)
T PRK06035 66 -EA--KA-------------IMARIRTSTSY-ESLSDADFIVEAVPEKLDLKRKVFAELERNVSP---ETIIASNTSGIM 125 (291)
T ss_pred -HH--HH-------------HHhCcEeeCCH-HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCC---CeEEEEcCCCCC
Confidence 00 00 01246677777 46899999999999875 78899999998887 788999998876
Q ss_pred cccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEe--CChhHHHHHHHHhcCCCceEEecCChHH
Q 012547 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di~g 279 (461)
.. .+.+.+..+ .++ +-..|..+..+... ..++.+ .+++..+.+.+++...|..+....|.-|
T Consensus 126 ~~------------~la~~~~~~-~r~-ig~hf~~P~~~~~~--vEv~~g~~T~~e~~~~~~~~~~~lgk~~v~v~d~pg 189 (291)
T PRK06035 126 IA------------EIATALERK-DRF-IGMHWFNPAPVMKL--IEVVRAALTSEETFNTTVELSKKIGKIPIEVADVPG 189 (291)
T ss_pred HH------------HHHhhcCCc-ccE-EEEecCCCcccCcc--EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCCC
Confidence 54 255555432 232 22333332222221 112222 2567788999999999988877777655
Q ss_pred HHHHHHHHHH
Q 012547 280 HEVMGGLKNV 289 (461)
Q Consensus 280 ve~~galKNv 289 (461)
-....++-|.
T Consensus 190 fv~nRl~~~~ 199 (291)
T PRK06035 190 FFTTRFIEGW 199 (291)
T ss_pred eeHHHHHHHH
Confidence 4343333333
No 55
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.35 E-value=2.7e-11 Score=129.07 Aligned_cols=202 Identities=14% Similarity=0.070 Sum_probs=131.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
++|+|||.|.||++||..|+++ | ++|++|+|+++.++.+.+. .. +. +
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~-G-----~~V~v~dr~~~~~~~l~~~--------~~--------~~----g------- 48 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASR-G-----FKISVYNRTYEKTEEFVKK--------AK--------EG----N------- 48 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHHHHh--------hh--------hc----C-------
Confidence 5899999999999999999999 8 9999999999877653211 00 00 0
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc---CCCEEEEcCC-chhHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW---DADIVINGLP-STETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~---~aDiIIiaVp-s~~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
..+..++++++++. ++|+||+++| ++.++++++++.+++.+ +++||.++|+
T Consensus 49 ----------------------~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~~vi~~l~~~L~~---g~iIID~gn~ 103 (470)
T PTZ00142 49 ----------------------TRVKGYHTLEELVNSLKKPRKVILLIKAGEAVDETIDNLLPLLEK---GDIIIDGGNE 103 (470)
T ss_pred ----------------------CcceecCCHHHHHhcCCCCCEEEEEeCChHHHHHHHHHHHhhCCC---CCEEEECCCC
Confidence 02345678888775 5898888865 57999999999999987 7899999988
Q ss_pred CccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCce------EEe
Q 012547 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFT------VWD 273 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~------v~~ 273 (461)
...++ .....+ +.+ .|.......+..||.-|+ .| + .++++++++..+.++.+|..-+-+ +.+
T Consensus 104 ~~~dt-----~~r~~~-l~~-~Gi~fldapVSGG~~gA~---~G-~-~lm~GG~~~a~~~~~piL~~ia~~~~~~~~~~~ 171 (470)
T PTZ00142 104 WYLNT-----ERRIKR-CEE-KGILYLGMGVSGGEEGAR---YG-P-SLMPGGNKEAYDHVKDILEKCSAKVGDSPCVTY 171 (470)
T ss_pred CHHHH-----HHHHHH-HHH-cCCeEEcCCCCCCHHHHh---cC-C-EEEEeCCHHHHHHHHHHHHHHhhhcCCCCeEEE
Confidence 76652 122222 222 132111223344444443 33 3 457788888888888888765544 222
Q ss_pred cCChHHH-HHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHH-HhCCCchhhc
Q 012547 274 NGDLVTH-EVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITH-LLAEEPEKLA 330 (461)
Q Consensus 274 s~Di~gv-e~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~-a~G~~~~t~~ 330 (461)
..+. |. -..+.+-|. -...+.+++.|...+++ ..|.+++.+.
T Consensus 172 ~G~~-GaGh~vKmvhN~--------------ie~~~m~~iaEa~~l~~~~~gl~~~~l~ 215 (470)
T PTZ00142 172 VGPG-SSGHYVKMVHNG--------------IEYGDMQLISESYKLMKHILGMSNEELS 215 (470)
T ss_pred ECCC-CHHHHHHHHhHH--------------HHHHHHHHHHHHHHHHHhhcCCCHHHHH
Confidence 2222 22 122222222 22334468899999997 6888877653
No 56
>PLN02858 fructose-bisphosphate aldolase
Probab=99.34 E-value=2.8e-11 Score=142.98 Aligned_cols=290 Identities=12% Similarity=0.086 Sum_probs=171.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
.||++||.|.||..||..|.++ | ++|++|+|+++.++.+..
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~-G-----~~v~v~dr~~~~~~~l~~--------------------------------- 45 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRS-G-----FKVQAFEISTPLMEKFCE--------------------------------- 45 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHC-C-----CeEEEEcCCHHHHHHHHH---------------------------------
Confidence 5799999999999999999999 8 999999999876553110
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHH---HHHHHHhhccCCCCEEEEEeec
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF---EEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl---~~i~~~l~~~~~~~iIIs~tkG 199 (461)
.+....+++.+++++||+||+|+|. .++++++ +.+.+.+.+ ++++|.++ .
T Consensus 46 ----------------------~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g~~~~l~~---g~iivd~S-T 99 (1378)
T PLN02858 46 ----------------------LGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEGAAKGLQK---GAVILIRS-T 99 (1378)
T ss_pred ----------------------cCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhhHHhcCCC---cCEEEECC-C
Confidence 0234557888999999999999995 5778886 456665555 67777665 4
Q ss_pred CccccccccccCCHHHHHHhHhC--CCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEe-cCC
Q 012547 200 VEAELEAVPRIITPTQMINRATG--VPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWD-NGD 276 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg--~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~-s~D 276 (461)
+.+.. ...+.+.+.+ .| .......+..||.-|. .|..+ ++++++++..++++.+|+.-+-+++. ..+
T Consensus 100 i~p~~-----~~~la~~l~~-~g~~~~~lDaPVsGg~~~A~---~G~L~-imvGG~~~~~~~~~p~l~~~g~~i~~~~G~ 169 (1378)
T PLN02858 100 ILPLQ-----LQKLEKKLTE-RKEQIFLVDAYVSKGMSDLL---NGKLM-IIASGRSDAITRAQPFLSAMCQKLYTFEGE 169 (1378)
T ss_pred CCHHH-----HHHHHHHHHh-cCCceEEEEccCcCCHHHHh---cCCeE-EEEcCCHHHHHHHHHHHHHhcCceEEecCC
Confidence 55541 2222232322 12 1111222344455443 34332 35678888889999999887766654 344
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhccC---hhhhhhhhccccchhHHHHHH
Q 012547 277 LVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP---LLADTYVTLLKGRNAWYGQEL 353 (461)
Q Consensus 277 i~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g~---glgDl~~T~~~sRN~~~G~~l 353 (461)
.=.-...+++-|. -.+....++.|...++++.|.+++.+++. +.|.... .+++ +..+
T Consensus 170 ~G~g~~~KL~nN~--------------l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s~g~s~~----~~~~--~~~~ 229 (1378)
T PLN02858 170 IGAGSKVKMVNEL--------------LEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWI----FKNH--VPLL 229 (1378)
T ss_pred CCHhHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCHH----HHhh--hhHh
Confidence 3222334444444 22334467899999999999999887642 2222111 1111 1112
Q ss_pred hcCCChhhHhhhhcCCCcc-chHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc-------CCCHHH
Q 012547 354 AKGRLTLDLGDSIKGKGMI-QGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM-------RESPIQ 425 (461)
Q Consensus 354 ~~g~~~~~~~~~~~~~~~v-EG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~-------~~~~~~ 425 (461)
.++.- ...-++ -....+..+.+++++.|+ + +|+...+++++.. +.+ ..
T Consensus 230 ~~~d~--------~~~F~l~l~~KDl~la~~~A~~~g~--------------~-lpl~~~a~~~~~~a~~~G~g~~D-~s 285 (1378)
T PLN02858 230 LKDDY--------IEGRFLNVLVQNLGIVLDMAKSLPF--------------P-LPLLAVAHQQLISGSSSMQGDDT-AT 285 (1378)
T ss_pred hcCCC--------CCCchhHHHHHHHHHHHHHHHHcCC--------------C-ChHHHHHHHHHHHHHhcCCCccC-hH
Confidence 11110 000011 223445578888999985 6 7888888877632 333 44
Q ss_pred HHHHHHhcccCCCcccccccccceeeecccc
Q 012547 426 AILEALRDETMNDPRDRIEIAQTHVFYRPSL 456 (461)
Q Consensus 426 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (461)
++.+++.+.... +++-+-+.-.|.|+-
T Consensus 286 av~~~~~~~~g~----~~~~~~~~~~~~~~~ 312 (1378)
T PLN02858 286 SLAKVWEKVFGV----NILEAANRELYKPED 312 (1378)
T ss_pred HHHHHHHHHcCC----CccccccccccChHH
Confidence 455555542221 344444444555543
No 57
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=99.34 E-value=4.9e-11 Score=116.92 Aligned_cols=148 Identities=18% Similarity=0.101 Sum_probs=108.9
Q ss_pred eEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCc
Q 012547 148 LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIEN 227 (461)
Q Consensus 148 i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~ 227 (461)
+..+.+..+++.++|+||+|||++.++++++++.+++.+ +++|||+++|+..+ .+++.++.. .
T Consensus 31 ~~~~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~---~~~ivS~~agi~~~------------~l~~~~~~~--~ 93 (245)
T TIGR00112 31 IVASSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGK---DKLLISIAAGVTLE------------KLSQLLGGT--R 93 (245)
T ss_pred cEEeCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccC---CCEEEEecCCCCHH------------HHHHHcCCC--C
Confidence 345567778888999999999999999999999987765 67999999999875 377777632 2
Q ss_pred EEEEeCcchhHhhhccCceEEEEe--CChhHHHHHHHHhcCCCceEEecCChHHHHHHHHHHHHHHHHHhhccCccchHH
Q 012547 228 ILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAALTNESATSKS 305 (461)
Q Consensus 228 v~vlsGPn~a~ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di~gve~~galKNv~Ai~~Gi~~g~~n~~a 305 (461)
.+++.+||.+..++.|.... ..+ .+++..+.+.++|+..|..+++.++.+. .+...+|- ++
T Consensus 94 ~ivR~mPn~~~~~~~g~t~~-~~~~~~~~~~~~~v~~lf~~~G~~~~v~E~~~~---------~~talsgs---gP---- 156 (245)
T TIGR00112 94 RVVRVMPNTPAKVGAGVTAI-AANANVSEEDRALVLALFKAVGEVVELPEALMD---------AVTALSGS---GP---- 156 (245)
T ss_pred eEEEECCChHHHHhCCeEEE-ecCCCCCHHHHHHHHHHHHhCCCEEEECHHHcc---------hHHhhccC---cH----
Confidence 36899999999998885332 232 2456778999999999988888776432 22222221 12
Q ss_pred HHHHHHHHHHHHHHHHhCCCchhh
Q 012547 306 VYFAHCTSEMVFITHLLAEEPEKL 329 (461)
Q Consensus 306 ~l~~~~~~Em~~l~~a~G~~~~t~ 329 (461)
+++...+..|..-+...|.+++..
T Consensus 157 A~~~~~~~al~~~~v~~Gl~~~~A 180 (245)
T TIGR00112 157 AYVFLFIEALADAGVKQGLPRELA 180 (245)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHH
Confidence 455556667777788889987654
No 58
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.34 E-value=7.4e-11 Score=120.52 Aligned_cols=220 Identities=18% Similarity=0.208 Sum_probs=143.4
Q ss_pred CCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhh
Q 012547 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (461)
Q Consensus 39 ~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~ 118 (461)
...+.++|+|||.|++|..+|..+|++ | ++|.-+|.++.+++.+ |.+. .|.....
T Consensus 5 ~k~~~~~I~ViGLGYVGLPlA~~fA~~-G-----~~ViG~DIn~~~Vd~l---------n~G~----------~~i~e~~ 59 (436)
T COG0677 5 IKNMSATIGVIGLGYVGLPLAAAFASA-G-----FKVIGVDINQKKVDKL---------NRGE----------SYIEEPD 59 (436)
T ss_pred hcCCceEEEEEccccccHHHHHHHHHc-C-----CceEeEeCCHHHHHHH---------hCCc----------ceeecCc
Confidence 344558999999999999999999999 8 9999999999988864 4433 1222110
Q ss_pred hhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc----------hhHHHHHHHHHHHhhccC
Q 012547 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------TETKEVFEEISRYWKERI 188 (461)
Q Consensus 119 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps----------~~~~~vl~~i~~~l~~~~ 188 (461)
+ ++++.+-+.. ..+++|+|.++ ++.||++|+|||. .++++..+.|+++|++
T Consensus 60 -------~--~~~v~~~v~~-------g~lraTtd~~~-l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~k-- 120 (436)
T COG0677 60 -------L--DEVVKEAVES-------GKLRATTDPEE-LKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKK-- 120 (436)
T ss_pred -------H--HHHHHHHHhc-------CCceEecChhh-cccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCC--
Confidence 0 1222222211 26899999987 5699999999997 3799999999999997
Q ss_pred CCCEEEEEeecCccccccccccCCHHHHHHhH-hCCCC-CcEEEEeCcch-----hH-hhhccCceEEEEeC-ChhHHHH
Q 012547 189 TVPVIISLAKGVEAELEAVPRIITPTQMINRA-TGVPI-ENILYLGGPNI-----AS-EIYNKEYANARICG-AEKWRKP 259 (461)
Q Consensus 189 ~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~-lg~~~-~~v~vlsGPn~-----a~-ev~~g~~~~~~~~~-~~~~~~~ 259 (461)
+..|| +-..+.+. +...+...+.+. .|... ..+.+-.-|.- .. |+. ..+ - ++++ .++..+.
T Consensus 121 -G~LVI-lEST~~PG-----TTe~v~~plle~~sgL~~~~Df~laysPERv~PG~~~~el~-~~~-k-VIgG~tp~~~e~ 190 (436)
T COG0677 121 -GDLVI-LESTTPPG-----TTEEVVKPLLEERSGLKFGEDFYLAYSPERVLPGNVLKELV-NNP-K-VIGGVTPKCAEL 190 (436)
T ss_pred -CCEEE-EecCCCCC-----cHHHHHHHHHhhcCCCcccceeeEeeCccccCCCchhhhhh-cCC-c-eeecCCHHHHHH
Confidence 56544 55566665 344444444443 22211 23433333433 22 111 111 1 3444 4555677
Q ss_pred HHHHhcCCCceEEecCChHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCc
Q 012547 260 LAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEP 326 (461)
Q Consensus 260 l~~ll~~~g~~v~~s~Di~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~ 326 (461)
.+.++++---.+...+|.+..|+++++-|++ |. .--...+|+..+|+++|.+.
T Consensus 191 a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~f-------------Rd-VNIALaNElali~~~~GIdv 243 (436)
T COG0677 191 AAALYKTIVEGVIPVTSARTAEMVKLTENTF-------------RD-VNIALANELALICNAMGIDV 243 (436)
T ss_pred HHHHHHHheEEEEEcCChHHHHHHHHHhhhh-------------hH-HHHHHHHHHHHHHHHhCCcH
Confidence 7777766555577789999999999999983 11 11235689999999999864
No 59
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.33 E-value=2e-10 Score=116.98 Aligned_cols=158 Identities=19% Similarity=0.174 Sum_probs=109.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
++|+|||.|+||.++|..|... | ++|.++.++....... ...
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~s-G-----~~Vvv~~r~~~~s~~~-------------------------A~~------- 59 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDS-G-----VDVVVGLREGSKSWKK-------------------------AEA------- 59 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHC-C-----CEEEEEECCchhhHHH-------------------------HHH-------
Confidence 6899999999999999999998 8 8999888775422110 000
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHH-HHHHHHhhccCCCCEEEEEeecCcc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVF-EEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl-~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
.++.. .+.+++++.||+|+++||+....+++ +++.+++++ ++++ +++.|+..
T Consensus 60 ----------------------~G~~~-~s~~eaa~~ADVVvLaVPd~~~~~V~~~~I~~~Lk~---g~iL-~~a~G~~i 112 (330)
T PRK05479 60 ----------------------DGFEV-LTVAEAAKWADVIMILLPDEVQAEVYEEEIEPNLKE---GAAL-AFAHGFNI 112 (330)
T ss_pred ----------------------CCCee-CCHHHHHhcCCEEEEcCCHHHHHHHHHHHHHhcCCC---CCEE-EECCCCCh
Confidence 02233 37788899999999999999889999 789998887 5655 88889876
Q ss_pred ccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHh-------hhccCceEEEEeCC--hhHHHHHHHHhcCCC-----
Q 012547 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE-------IYNKEYANARICGA--EKWRKPLAKFLRRPH----- 268 (461)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~e-------v~~g~~~~~~~~~~--~~~~~~l~~ll~~~g----- 268 (461)
.. .+...+. ..+ +++..|+.+-+ ++.|.++.+.+..+ .+..+.+..++...|
T Consensus 113 ~~------------~~~~p~~-~~~-Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~~l~~aiG~~~~g 178 (330)
T PRK05479 113 HF------------GQIVPPA-DVD-VIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLALAYAKGIGGTRAG 178 (330)
T ss_pred hh------------ceeccCC-CCc-EEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHHHHHHHHcCCCccc
Confidence 51 2332332 223 56778999877 77787776544433 555666666666544
Q ss_pred -----ceEEecCChHHH
Q 012547 269 -----FTVWDNGDLVTH 280 (461)
Q Consensus 269 -----~~v~~s~Di~gv 280 (461)
|+-...+|+.|-
T Consensus 179 ~~~ttf~~e~~~dl~ge 195 (330)
T PRK05479 179 VIETTFKEETETDLFGE 195 (330)
T ss_pred eeeeeecccccccchhh
Confidence 333445677764
No 60
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.33 E-value=1.2e-10 Score=116.60 Aligned_cols=183 Identities=20% Similarity=0.255 Sum_probs=112.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
.+||+|||+|.||+++|..++.+ | ++|++|+++++.++.+... +.... ..+.+..
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~-G-----~~V~l~d~~~~~l~~~~~~-~~~~~-------------~~~~~~~----- 57 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFH-G-----FDVTIYDISDEALEKAKER-IAKLA-------------DRYVRDL----- 57 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhc-C-----CeEEEEeCCHHHHHHHHHH-HHHHH-------------HHHHHcC-----
Confidence 46899999999999999999999 8 9999999998877654321 10010 1111110
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch--hHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~--~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
.+.+.+-.. ....++..++|+++++++||+||+|+|++ ..+++++++.+++++ ++++++.+.++
T Consensus 58 --~~~~~~~~~---------~~~~~i~~~~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~---~~ii~sntSt~ 123 (287)
T PRK08293 58 --EATKEAPAE---------AALNRITLTTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPE---KTIFATNSSTL 123 (287)
T ss_pred --CCChhhhHH---------HHHcCeEEeCCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCC---CCEEEECcccC
Confidence 000000000 00126788899999899999999999976 788999999998876 67666655444
Q ss_pred ccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEE--eCChhHHHHHHHHhcCCCceEEe-cCCh
Q 012547 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWD-NGDL 277 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~--~~~~~~~~~l~~ll~~~g~~v~~-s~Di 277 (461)
. +++ +.+.+..+ .++.. .-| ...........++. ..+++..+.+.+++...|..+.. ..|.
T Consensus 124 ~-----------~~~-~~~~~~~~-~r~vg-~Hf--~~p~~~~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~ 187 (287)
T PRK08293 124 L-----------PSQ-FAEATGRP-EKFLA-LHF--ANEIWKNNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQ 187 (287)
T ss_pred C-----------HHH-HHhhcCCc-ccEEE-EcC--CCCCCcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 3 334 34444432 23221 112 11112222222232 24567889999999998877544 4465
Q ss_pred HHH
Q 012547 278 VTH 280 (461)
Q Consensus 278 ~gv 280 (461)
-|-
T Consensus 188 pgf 190 (287)
T PRK08293 188 PGY 190 (287)
T ss_pred CCH
Confidence 543
No 61
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.32 E-value=6.7e-11 Score=117.93 Aligned_cols=177 Identities=15% Similarity=0.144 Sum_probs=119.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhh---hhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATA---EHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~---~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
+||+|||+|.||.++|..++.+ | ++|++|+++++.++.... +.+....+.+ ........
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~-g-----~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g----------~~~~~~~~-- 65 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA-G-----YDVVMVDISDAAVDRGLATITKSLDRLVKKG----------KMTEADKE-- 65 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC-C-----CceEEEeCCHHHHHHHHHHHHHHHHHHHHcC----------CCCHHHHH--
Confidence 5899999999999999999999 8 899999999987753211 0111111110 00000000
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh--HHHHHHHHHHHhhccCCCCEEEEEee
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~--~~~vl~~i~~~l~~~~~~~iIIs~tk 198 (461)
+ ...++.+++|.++ +++||+||+|+|.+. ..++++++.+++++ +++++|.+.
T Consensus 66 ---------~-------------~~~~l~~~~~~~~-~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~---~~il~s~ts 119 (282)
T PRK05808 66 ---------A-------------ALARITGTTDLDD-LKDADLVIEAATENMDLKKKIFAQLDEIAKP---EAILATNTS 119 (282)
T ss_pred ---------H-------------HHhCeEEeCCHHH-hccCCeeeecccccHHHHHHHHHHHHhhCCC---CcEEEECCC
Confidence 0 0125677888864 799999999999754 37999999999987 788888888
Q ss_pred cCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEE--eCChhHHHHHHHHhcCCCceEEecCC
Q 012547 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWDNGD 276 (461)
Q Consensus 199 Gi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~--~~~~~~~~~l~~ll~~~g~~v~~s~D 276 (461)
|+... .+.+.++.+ .+ .+...|+.+..+..+. .++. ..+++..+.+.++|...|..+....|
T Consensus 120 ~~~~~------------~la~~~~~~-~r-~ig~h~~~P~~~~~~v--ev~~g~~t~~e~~~~~~~l~~~lGk~pv~~~d 183 (282)
T PRK05808 120 SLSIT------------ELAAATKRP-DK-VIGMHFFNPVPVMKLV--EIIRGLATSDATHEAVEALAKKIGKTPVEVKN 183 (282)
T ss_pred CCCHH------------HHHHhhCCC-cc-eEEeeccCCcccCccE--EEeCCCCCCHHHHHHHHHHHHHcCCeeEEecC
Confidence 87654 356666543 23 4566777766554442 2222 34578889999999999988777677
Q ss_pred hHHH
Q 012547 277 LVTH 280 (461)
Q Consensus 277 i~gv 280 (461)
.-|-
T Consensus 184 ~~g~ 187 (282)
T PRK05808 184 APGF 187 (282)
T ss_pred ccCh
Confidence 6543
No 62
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.31 E-value=1.3e-10 Score=117.42 Aligned_cols=206 Identities=16% Similarity=0.135 Sum_probs=129.4
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhh---hHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAE---HLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~---~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
+|+|+|||+|.||+++|..|+++ | ++|++|+++++.++.+... .+....+. .+++...
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~-G-----~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~------------g~~~~~~- 62 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARA-G-----HEVRLWDADPAAAAAAPAYIAGRLEDLAAF------------DLLDGEA- 62 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHC-C-----CeeEEEeCCHHHHHHHHHHHHHHHHHHHHc------------CCCchhh-
Confidence 36899999999999999999999 8 9999999998776653221 00000000 0111000
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch--hHHHHHHHHHHHhhccCCCCEEEEEe
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLA 197 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~--~~~~vl~~i~~~l~~~~~~~iIIs~t 197 (461)
.+....++..++|++++++++|+||.|+|+. ....++.++.++.++ ++++.|.+
T Consensus 63 ---------------------~~~~~~~i~~~~~~~~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~---~~ii~sst 118 (308)
T PRK06129 63 ---------------------PDAVLARIRVTDSLADAVADADYVQESAPENLELKRALFAELDALAPP---HAILASST 118 (308)
T ss_pred ---------------------HHHHhcCeEEECcHHHhhCCCCEEEECCcCCHHHHHHHHHHHHHhCCC---cceEEEeC
Confidence 0000125678899998899999999999986 577788888877665 56666666
Q ss_pred ecCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEE--eCChhHHHHHHHHhcCCCceEEec-
Q 012547 198 KGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWDN- 274 (461)
Q Consensus 198 kGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~--~~~~~~~~~l~~ll~~~g~~v~~s- 274 (461)
+++.. ..+.+.+..+ .. .+...|-.+.... ....++. .++++..+.+.++|...|.++...
T Consensus 119 s~~~~------------~~la~~~~~~-~~-~~~~hp~~p~~~~--~lveiv~~~~t~~~~~~~~~~~~~~lG~~~v~v~ 182 (308)
T PRK06129 119 SALLA------------SAFTEHLAGR-ER-CLVAHPINPPYLI--PVVEVVPAPWTAPATLARAEALYRAAGQSPVRLR 182 (308)
T ss_pred CCCCH------------HHHHHhcCCc-cc-EEEEecCCCcccC--ceEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 55432 2355555432 12 2333333221100 1111221 256778899999999988876655
Q ss_pred CChHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhh
Q 012547 275 GDLVTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKL 329 (461)
Q Consensus 275 ~Di~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~ 329 (461)
.|.-|. + - | -++...++|...+++..|.+++.+
T Consensus 183 ~~~~G~-i----~--------------n---rl~~a~~~EA~~l~~~g~~~~~~i 215 (308)
T PRK06129 183 REIDGF-V----L--------------N---RLQGALLREAFRLVADGVASVDDI 215 (308)
T ss_pred CCCccH-H----H--------------H---HHHHHHHHHHHHHHHcCCCCHHHH
Confidence 455443 1 1 1 133468899999999999998776
No 63
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.24 E-value=4.4e-10 Score=112.46 Aligned_cols=178 Identities=19% Similarity=0.184 Sum_probs=112.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
.||+|||+|.||..+|..|+++ | ++|++|+++++.++.+... +........ ....+...
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-G-----~~V~~~d~~~~~~~~~~~~-~~~~~~~~~--------~~g~~~~~------ 60 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-G-----FQTTLVDIKQEQLESAQQE-IASIFEQGV--------ARGKLTEA------ 60 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-C-----CcEEEEeCCHHHHHHHHHH-HHHHHHHHH--------HcCCCCHH------
Confidence 5899999999999999999999 8 9999999999887764432 111111100 00000000
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh--HHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~--~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
.. +....++..++++++++++||+||+|+|.+. ...++.++.+++++ ++++++.+.++.
T Consensus 61 -~~---------------~~~~~~i~~~~~~~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~---~~il~~~tSt~~ 121 (288)
T PRK09260 61 -AR---------------QAALARLSYSLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPA---ECYIATNTSTMS 121 (288)
T ss_pred -HH---------------HHHHhCeEEeCcHHHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCC---CcEEEEcCCCCC
Confidence 00 0001256788899889999999999999874 56778888888876 676666665555
Q ss_pred cccccccccCCHHHHHHhHhCCCCCcE-E-EEeCcchhHhhhccCceEEEEeC---ChhHHHHHHHHhcCCCceEEecCC
Q 012547 202 AELEAVPRIITPTQMINRATGVPIENI-L-YLGGPNIASEIYNKEYANARICG---AEKWRKPLAKFLRRPHFTVWDNGD 276 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~v-~-vlsGPn~a~ev~~g~~~~~~~~~---~~~~~~~l~~ll~~~g~~v~~s~D 276 (461)
+. + +.+....+ .++ . ....|-. .+.... ++++ +++..+.++.+|...+..+....|
T Consensus 122 ~~-----------~-l~~~~~~~-~r~~g~h~~~Pv~-----~~~Lve-~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d 182 (288)
T PRK09260 122 PT-----------E-IASFTKRP-ERVIAMHFFNPVH-----KMKLVE-LIRGLETSDETVQVAKEVAEQMGKETVVVNE 182 (288)
T ss_pred HH-----------H-HHhhcCCc-ccEEEEecCCCcc-----cCceEE-EeCCCCCCHHHHHHHHHHHHHcCCeEEEecC
Confidence 43 3 44444322 111 1 1112321 222222 3333 678889999999998988777677
Q ss_pred hHHH
Q 012547 277 LVTH 280 (461)
Q Consensus 277 i~gv 280 (461)
.-|-
T Consensus 183 ~~Gf 186 (288)
T PRK09260 183 FPGF 186 (288)
T ss_pred cccH
Confidence 5543
No 64
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=99.24 E-value=1.5e-11 Score=110.75 Aligned_cols=116 Identities=22% Similarity=0.351 Sum_probs=84.2
Q ss_pred EEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccCCc
Q 012547 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRT 125 (461)
Q Consensus 46 I~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~~ 125 (461)
|+|+|+|++|+.+|..|++. | ++|+++.|++ .++.++++++ .+.... ++..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-g-----~~V~l~~r~~-~~~~~~~~g~-------------------~~~~~~---~~~~ 51 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-G-----HDVTLVSRSP-RLEAIKEQGL-------------------TITGPD---GDET 51 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-T-----CEEEEEESHH-HHHHHHHHCE-------------------EEEETT---EEEE
T ss_pred CEEECcCHHHHHHHHHHHHC-C-----CceEEEEccc-cHHhhhheeE-------------------EEEecc---ccee
Confidence 78999999999999999998 8 9999999998 6665443321 011000 0000
Q ss_pred cchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccccc
Q 012547 126 LHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELE 205 (461)
Q Consensus 126 l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~~~ 205 (461)
+ .......+..+....+|+||+|||+.+++++++.+++++.+ ++.|++++||+...
T Consensus 52 ~-------------------~~~~~~~~~~~~~~~~D~viv~vKa~~~~~~l~~l~~~~~~---~t~iv~~qNG~g~~-- 107 (151)
T PF02558_consen 52 V-------------------QPPIVISAPSADAGPYDLVIVAVKAYQLEQALQSLKPYLDP---NTTIVSLQNGMGNE-- 107 (151)
T ss_dssp E-------------------EEEEEESSHGHHHSTESEEEE-SSGGGHHHHHHHHCTGEET---TEEEEEESSSSSHH--
T ss_pred c-------------------ccccccCcchhccCCCcEEEEEecccchHHHHHHHhhccCC---CcEEEEEeCCCCcH--
Confidence 1 01222333323468899999999999999999999999987 68999999999876
Q ss_pred cccccCCHHHHHHhHhCC
Q 012547 206 AVPRIITPTQMINRATGV 223 (461)
Q Consensus 206 ~~~~~~~~se~i~~~lg~ 223 (461)
+.+.+.++.
T Consensus 108 ---------~~l~~~~~~ 116 (151)
T PF02558_consen 108 ---------EVLAEYFPR 116 (151)
T ss_dssp ---------HHHHCHSTG
T ss_pred ---------HHHHHHcCC
Confidence 667777753
No 65
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.23 E-value=4.2e-10 Score=112.76 Aligned_cols=177 Identities=15% Similarity=0.194 Sum_probs=110.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
.+||+|||+|.||+++|..|+.+ | ++|++|+++++.++.+... +.+.. ..+.+. +.++
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~-G-----~~V~l~d~~~~~~~~~~~~-----i~~~~---------~~~~~~--g~~~ 61 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALA-G-----YDVLLNDVSADRLEAGLAT-----INGNL---------ARQVAK--GKIS 61 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHHHHH-----HHHHH---------HHHHHc--CCCC
Confidence 46899999999999999999999 8 9999999998877642211 11100 000000 0000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch--hHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~--~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
.... . ....++..++|++ ++++||+||+|||++ ..+.+++++.+++++ +++++|.+.++
T Consensus 62 ~~~~------~---------~~~~~i~~~~~~~-~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~---~~ii~s~ts~~ 122 (292)
T PRK07530 62 EEAR------A---------AALARISTATDLE-DLADCDLVIEAATEDETVKRKIFAQLCPVLKP---EAILATNTSSI 122 (292)
T ss_pred HHHH------H---------HHHhCeEeeCCHH-HhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCC---CcEEEEcCCCC
Confidence 0000 0 0012467778885 478999999999974 577888999998887 78888877776
Q ss_pred ccccccccccCCHHHHHHhHhCCCCCcE-EE-EeCcchhHhhhccCceEEEE--eCChhHHHHHHHHhcCCCceEEecCC
Q 012547 201 EAELEAVPRIITPTQMINRATGVPIENI-LY-LGGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWDNGD 276 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~v-~v-lsGPn~a~ev~~g~~~~~~~--~~~~~~~~~l~~ll~~~g~~v~~s~D 276 (461)
... + +.+.+..+ .++ .. ..-|... ... ..++. ..+++..+.+.++|...|..+.+..|
T Consensus 123 ~~s-----------~-la~~~~~~-~r~~g~h~~~p~~~---~~~--vei~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d 184 (292)
T PRK07530 123 SIT-----------R-LASATDRP-ERFIGIHFMNPVPV---MKL--VELIRGIATDEATFEAAKEFVTKLGKTITVAED 184 (292)
T ss_pred CHH-----------H-HHhhcCCc-ccEEEeeccCCccc---Cce--EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecC
Confidence 543 2 44444322 222 11 1112221 111 12222 35678889999999999988777777
Q ss_pred hH
Q 012547 277 LV 278 (461)
Q Consensus 277 i~ 278 (461)
.-
T Consensus 185 ~p 186 (292)
T PRK07530 185 FP 186 (292)
T ss_pred cC
Confidence 54
No 66
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.20 E-value=2.4e-10 Score=107.14 Aligned_cols=173 Identities=22% Similarity=0.310 Sum_probs=104.3
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccCC
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~ 124 (461)
||+|||+|.||..+|..++.+ | ++|++|+++++.++...+ .+...+.... + ...+..-.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-G-----~~V~l~d~~~~~l~~~~~-~i~~~l~~~~-------~-~~~~~~~~------ 59 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-G-----YEVTLYDRSPEALERARK-RIERLLDRLV-------R-KGRLSQEE------ 59 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-T-----SEEEEE-SSHHHHHHHHH-HHHHHHHHHH-------H-TTTTTHHH------
T ss_pred CEEEEcCCHHHHHHHHHHHhC-C-----CcEEEEECChHHHHhhhh-HHHHHHhhhh-------h-hccchhhh------
Confidence 799999999999999999999 8 999999999988765432 1111111100 0 00111000
Q ss_pred ccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch--hHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~--~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
+.. ...++.+++|++++. +||+||-|+|.. ..++++.+|..++.+ ++++.|.+.++..
T Consensus 60 ---~~~-------------~~~~i~~~~dl~~~~-~adlViEai~E~l~~K~~~~~~l~~~~~~---~~ilasnTSsl~i 119 (180)
T PF02737_consen 60 ---ADA-------------ALARISFTTDLEEAV-DADLVIEAIPEDLELKQELFAELDEICPP---DTILASNTSSLSI 119 (180)
T ss_dssp ---HHH-------------HHHTEEEESSGGGGC-TESEEEE-S-SSHHHHHHHHHHHHCCS-T---TSEEEE--SSS-H
T ss_pred ---hhh-------------hhhhcccccCHHHHh-hhheehhhccccHHHHHHHHHHHHHHhCC---CceEEecCCCCCH
Confidence 000 012688999999877 999999999975 688999999999987 7988888877765
Q ss_pred ccccccccCCHHHHHHhHhCCCCCcEEEE--eCcchhHhhhccCceEEEEe--CChhHHHHHHHHhcCCCceEEecCC
Q 012547 203 ELEAVPRIITPTQMINRATGVPIENILYL--GGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGD 276 (461)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~~v~vl--sGPn~a~ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~D 276 (461)
. + +...+..| .++..+ ..|-.. .....++.+ .+++..+.+.+++...|..+....|
T Consensus 120 ~-----------~-la~~~~~p-~R~ig~Hf~~P~~~-----~~lVEvv~~~~T~~~~~~~~~~~~~~~gk~pv~v~D 179 (180)
T PF02737_consen 120 S-----------E-LAAALSRP-ERFIGMHFFNPPHL-----MPLVEVVPGPKTSPETVDRVRALLRSLGKTPVVVKD 179 (180)
T ss_dssp H-----------H-HHTTSSTG-GGEEEEEE-SSTTT-------EEEEEE-TTS-HHHHHHHHHHHHHTT-EEEEEES
T ss_pred H-----------H-HHhccCcC-ceEEEEeccccccc-----CceEEEeCCCCCCHHHHHHHHHHHHHCCCEEEEecC
Confidence 4 3 45555543 343211 223321 112222332 2567789999999988887766555
No 67
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.19 E-value=1.6e-09 Score=110.30 Aligned_cols=176 Identities=18% Similarity=0.153 Sum_probs=111.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
..||+|||+|.||+.||..++.+ | ++|++|+++++.++.... .+...+..-. +. ...+.
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a-G-----~~V~l~D~~~~~~~~~~~-~i~~~~~~~~-------~~-~~~~~------ 65 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH-G-----LDVVAWDPAPGAEAALRA-NVANAWPALE-------RQ-GLAPG------ 65 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-HHHHHHHHHH-------Hc-CCChh------
Confidence 46899999999999999999999 8 999999999876654321 1111111000 00 00000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch--hHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~--~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
.....+..++++++++++||+||.|+|.. ..++++.++.+++++ +++|.|.|.|+
T Consensus 66 --------------------~~~~~i~~~~~l~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~---~aIlaSnTS~l 122 (321)
T PRK07066 66 --------------------ASPARLRFVATIEACVADADFIQESAPEREALKLELHERISRAAKP---DAIIASSTSGL 122 (321)
T ss_pred --------------------hHHhhceecCCHHHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCC---CeEEEECCCcc
Confidence 00125778889999999999999999975 577788999998887 67777766655
Q ss_pred ccccccccccCCHHHHHHhHhCCCCCcEEEE--eCcchhHhhhccCceEEEEe--CChhHHHHHHHHhcCCCceEEec-C
Q 012547 201 EAELEAVPRIITPTQMINRATGVPIENILYL--GGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDN-G 275 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~v~vl--sGPn~a~ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v~~s-~ 275 (461)
... + +.+.+..| .++... ..|-+.. ....++.+ .+++..+.+.+++...|...... .
T Consensus 123 ~~s-----------~-la~~~~~p-~R~~g~HffnP~~~~-----pLVEVv~g~~T~~e~~~~~~~f~~~lGk~pV~v~k 184 (321)
T PRK07066 123 LPT-----------D-FYARATHP-ERCVVGHPFNPVYLL-----PLVEVLGGERTAPEAVDAAMGIYRALGMRPLHVRK 184 (321)
T ss_pred CHH-----------H-HHHhcCCc-ccEEEEecCCccccC-----ceEEEeCCCCCCHHHHHHHHHHHHHcCCEeEecCC
Confidence 433 3 45555443 333221 2222211 11222222 35778899999999999766554 6
Q ss_pred ChHHH
Q 012547 276 DLVTH 280 (461)
Q Consensus 276 Di~gv 280 (461)
|.-|-
T Consensus 185 d~pGF 189 (321)
T PRK07066 185 EVPGF 189 (321)
T ss_pred CCccH
Confidence 76653
No 68
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.18 E-value=2.6e-09 Score=105.84 Aligned_cols=200 Identities=16% Similarity=0.142 Sum_probs=122.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
.++|++||.|+||.+|+..|.++ | |.|++|+|+.++.+.+.+.
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~-G-----~kVtV~dr~~~k~~~f~~~------------------------------- 77 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKA-G-----YKVTVYDRTKDKCKEFQEA------------------------------- 77 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHc-C-----CEEEEEeCcHHHHHHHHHh-------------------------------
Confidence 47999999999999999999999 8 9999999998766542110
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHHHHHHHHhh---ccCCCCEEEEEee
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFEEISRYWK---ERITVPVIISLAK 198 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl~~i~~~l~---~~~~~~iIIs~tk 198 (461)
+..+.+++.|+++++|+||.+||. .+.++++-.-...+. ++ ++..|.. .
T Consensus 78 ------------------------Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g--~~~~vDm-S 130 (327)
T KOG0409|consen 78 ------------------------GARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKSGVLSGIRPG--KKATVDM-S 130 (327)
T ss_pred ------------------------chhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCCcceeeccCC--CceEEec-c
Confidence 234457788999999999999994 577777644222222 21 1221322 2
Q ss_pred cCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEE-EEeCChhHHHHHHHHhcCCCceEEecCCh
Q 012547 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANA-RICGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (461)
Q Consensus 199 Gi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~-~~~~~~~~~~~l~~ll~~~g~~v~~s~Di 277 (461)
.+++. .+..|.+.... .....+-.|-.--.-+...-+++ ++++++...+....+|+..|.++..-..+
T Consensus 131 Tidp~---------~s~ei~~~i~~--~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~~~~~mGk~~~~~G~~ 199 (327)
T KOG0409|consen 131 TIDPD---------TSLEIAKAISN--KGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASPVFKLMGKNVVFLGGV 199 (327)
T ss_pred ccCHH---------HHHHHHHHHHh--CCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHHHHHHhcceEEEeccc
Confidence 44443 12223333321 11123334433221122122333 45788888999999999988766654432
Q ss_pred HHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHHHhCCCchhhcc
Q 012547 278 VTHEVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAG 331 (461)
Q Consensus 278 ~gve~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~a~G~~~~t~~g 331 (461)
=.-+-+++..|. -....-.++.|...|+..+|.++.++.+
T Consensus 200 GnG~~~Kl~nnm--------------~~g~~M~g~aEal~la~r~GLd~~~l~e 239 (327)
T KOG0409|consen 200 GNGQAAKLCNNM--------------LLGSSMVGLAEALALADRLGLDAKKLLE 239 (327)
T ss_pred CchHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 111222222222 2233335789999999999999988765
No 69
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.17 E-value=1.8e-09 Score=108.40 Aligned_cols=180 Identities=17% Similarity=0.183 Sum_probs=111.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
.+||+|||+|.||.+||..|+.. | ++|++|+++++.++...+ .+...+..-. .. ..+...
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~-G-----~~V~~~d~~~~~~~~~~~-~~~~~~~~~~-------~~-g~~~~~----- 63 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAA-G-----MDVWLLDSDPAALSRGLD-SISSSLARLV-------KK-GKMSQE----- 63 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhc-C-----CeEEEEeCCHHHHHHHHH-HHHHHHHHHH-------Hc-CCCCHH-----
Confidence 36899999999999999999998 8 899999999877654221 1110010000 00 000000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCC--chhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP--STETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVp--s~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
.. .+ ....+.++++.+ ++++||+||+||| .+....++.++.+++++ +++++|.+.|+
T Consensus 64 --~~------~~---------~~~~~~~~~~~~-~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~---~~il~s~tS~i 122 (295)
T PLN02545 64 --EA------DA---------TLGRIRCTTNLE-ELRDADFIIEAIVESEDLKKKLFSELDRICKP---SAILASNTSSI 122 (295)
T ss_pred --HH------HH---------HHhceEeeCCHH-HhCCCCEEEEcCccCHHHHHHHHHHHHhhCCC---CcEEEECCCCC
Confidence 00 00 001355666764 5799999999999 67788889999988887 67888888887
Q ss_pred ccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEe--CChhHHHHHHHHhcCCCceEEecCChH
Q 012547 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di~ 278 (461)
... .+++.+..+ .++. ...|..+... +....++.+ .+++..+.++++|...|..+.+..|..
T Consensus 123 ~~~------------~l~~~~~~~-~r~~-g~h~~~pp~~--~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~~ 186 (295)
T PLN02545 123 SIT------------RLASATQRP-QQVI-GMHFMNPPPI--MKLVEIIRGADTSDEVFDATKALAERFGKTVVCSQDYP 186 (295)
T ss_pred CHH------------HHHhhcCCC-cceE-EEeccCCccc--CceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCcc
Confidence 654 255554432 2321 1212222211 222222222 367788999999999998888777765
Q ss_pred H
Q 012547 279 T 279 (461)
Q Consensus 279 g 279 (461)
|
T Consensus 187 g 187 (295)
T PLN02545 187 G 187 (295)
T ss_pred c
Confidence 5
No 70
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.15 E-value=8.6e-10 Score=104.76 Aligned_cols=165 Identities=16% Similarity=0.183 Sum_probs=109.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
||+|+|+|+|++|+++|..|++. | |+|.+-+|+.+...+... .++.
T Consensus 1 m~~~~i~GtGniG~alA~~~a~a-g-----~eV~igs~r~~~~~~a~a---------------------~~l~------- 46 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKA-G-----HEVIIGSSRGPKALAAAA---------------------AALG------- 46 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhC-C-----CeEEEecCCChhHHHHHH---------------------Hhhc-------
Confidence 58999999999999999999999 8 999999777654332100 0111
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
..+.. .++++|++.+|+||++||-.++.++++++...+. +++||+++|.+..
T Consensus 47 -----------------------~~i~~-~~~~dA~~~aDVVvLAVP~~a~~~v~~~l~~~~~----~KIvID~tnp~~~ 98 (211)
T COG2085 47 -----------------------PLITG-GSNEDAAALADVVVLAVPFEAIPDVLAELRDALG----GKIVIDATNPIEV 98 (211)
T ss_pred -----------------------ccccc-CChHHHHhcCCEEEEeccHHHHHhHHHHHHHHhC----CeEEEecCCCccc
Confidence 01222 3456788999999999999999999999998776 4799999998643
Q ss_pred cc---c--cccccCCHHHHHHhHhCCCCCcEE---EEeCcchhHhhhc--cCceEEEEeCC-hhHHHHHHHHhcCCCceE
Q 012547 203 EL---E--AVPRIITPTQMINRATGVPIENIL---YLGGPNIASEIYN--KEYANARICGA-EKWRKPLAKFLRRPHFTV 271 (461)
Q Consensus 203 ~~---~--~~~~~~~~se~i~~~lg~~~~~v~---vlsGPn~a~ev~~--g~~~~~~~~~~-~~~~~~l~~ll~~~g~~v 271 (461)
.. + ..+....-++.++++++.. +++ --..+........ +.+. +.+++| .+..+.+.++.+..||+.
T Consensus 99 ~~~~~~~~~~~~~~saae~va~~lp~a--kVVkAFn~i~a~~l~~~~~~~~~~~-v~vagDD~~Ak~~v~~L~~~iG~~~ 175 (211)
T COG2085 99 NGEPGDLYLVPSEGSAAEIVAKLLPGA--KVVKAFNTIPAAVLADLAKPGGRRD-VLVAGDDAEAKAVVAELAEDIGFRP 175 (211)
T ss_pred cCCccccccCCCCCcHHHHHHHHCCCc--chhhhhcccCHHHhccCCCcCCcee-EEEecCcHHHHHHHHHHHHhcCcce
Confidence 10 0 0123556789999988643 221 0011111111111 1222 234554 556788889988889886
Q ss_pred E
Q 012547 272 W 272 (461)
Q Consensus 272 ~ 272 (461)
.
T Consensus 176 l 176 (211)
T COG2085 176 L 176 (211)
T ss_pred e
Confidence 4
No 71
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.14 E-value=9.5e-10 Score=117.25 Aligned_cols=200 Identities=15% Similarity=0.054 Sum_probs=123.1
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccCC
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~ 124 (461)
+|+|||.|.||.+||..|+++ | ++|.+|+|++++++.+.+ . +..+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~-G-----~~V~v~drt~~~~~~l~~--------~-------------~~~g-------- 45 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH-G-----FTVSVYNRTPEKTDEFLA--------E-------------HAKG-------- 45 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc-C-----CeEEEEeCCHHHHHHHHh--------h-------------ccCC--------
Confidence 489999999999999999999 8 999999999987664221 1 0000
Q ss_pred ccchhhhhhhcccccCCCCCCCCeEEecCHHHHh---cCCCEEEEcCCc-hhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV---WDADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av---~~aDiIIiaVps-~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
..+...+++++++ +.+|+||++||+ ..++++++++.+++.+ +++||.++++.
T Consensus 46 ---------------------~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~Vi~~l~~~L~~---g~iIID~gns~ 101 (467)
T TIGR00873 46 ---------------------KKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAVINQLLPLLEK---GDIIIDGGNSH 101 (467)
T ss_pred ---------------------CCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHHHHHHHhhCCC---CCEEEECCCcC
Confidence 0122334455544 578999999998 7899999999999887 68899888776
Q ss_pred ccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceE------Eec
Q 012547 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTV------WDN 274 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v------~~s 274 (461)
...+ .. ..+.+.+ .|.......+..||.-|+ .| + .++++++++..+.++.+|..-+-++ .+.
T Consensus 102 ~~~t-----~~-~~~~l~~-~gi~fvdapVsGG~~gA~---~G-~-~im~GG~~~a~~~~~p~L~~ia~~~~~~~~~~~~ 169 (467)
T TIGR00873 102 YPDT-----ER-RYKELKA-KGILFVGSGVSGGEEGAR---KG-P-SIMPGGSAEAWPLVAPIFQKIAAKVDGEPCCTWI 169 (467)
T ss_pred HHHH-----HH-HHHHHHh-cCCEEEcCCCCCCHHHHh---cC-C-cCCCCCCHHHHHHHHHHHHHHhhhcCCCCceEEE
Confidence 5442 11 1111211 121111112333443333 33 3 3457888888888988887644332 222
Q ss_pred CChHHH-HHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHH-HhCCCchhhc
Q 012547 275 GDLVTH-EVMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITH-LLAEEPEKLA 330 (461)
Q Consensus 275 ~Di~gv-e~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~-a~G~~~~t~~ 330 (461)
.+. |. -..+.+-|. -...+.+++.|...|++ ..|.+++.+.
T Consensus 170 G~~-GsG~~vKmvhN~--------------i~~~~m~~~aEa~~ll~~~~g~~~~~l~ 212 (467)
T TIGR00873 170 GPD-GAGHYVKMVHNG--------------IEYGDMQLICEAYDILKDGLGLSNEEIA 212 (467)
T ss_pred CCc-CHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 221 21 122222222 22344568899999885 6898876653
No 72
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.13 E-value=5.1e-10 Score=111.61 Aligned_cols=158 Identities=15% Similarity=0.078 Sum_probs=98.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|.||+++|..|+++ | ++|.+|+++++.++.+.. . +.
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~-g-----~~V~~~d~~~~~~~~a~~--------~----------------g~------ 44 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSL-G-----HTVYGVSRRESTCERAIE--------R----------------GL------ 44 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHHHH--------C----------------CC------
Confidence 6899999999999999999998 8 899999999865543110 0 00
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
....+++. +++++||+||+|+|.+.+.++++++.+++++ ++ +|+-+.++...
T Consensus 45 -----------------------~~~~~~~~-~~~~~aDlVilavp~~~~~~~~~~l~~~l~~---~~-ii~d~~Svk~~ 96 (279)
T PRK07417 45 -----------------------VDEASTDL-SLLKDCDLVILALPIGLLLPPSEQLIPALPP---EA-IVTDVGSVKAP 96 (279)
T ss_pred -----------------------cccccCCH-hHhcCCCEEEEcCCHHHHHHHHHHHHHhCCC---Cc-EEEeCcchHHH
Confidence 00123444 3578999999999999999999999998876 55 44555455432
Q ss_pred cccccccCCHHHHHHhHhCCCCCcEEEEeCcch-----hH-hhhccCceEEEE--eCChhHHHHHHHHhcCCCceEEecC
Q 012547 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNI-----AS-EIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWDNG 275 (461)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~-----a~-ev~~g~~~~~~~--~~~~~~~~~l~~ll~~~g~~v~~s~ 275 (461)
..+.+.+... .....-.+.||.. +. .+..+.+..++. ..+++..+.++++++..|.+++..+
T Consensus 97 ---------~~~~~~~~~~-~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v~~l~~~lG~~~v~~~ 166 (279)
T PRK07417 97 ---------IVEAWEKLHP-RFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAIVEELAVSLGSKIYTAD 166 (279)
T ss_pred ---------HHHHHHHhhC-CceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 1122222211 0000012334331 11 123444333333 2356678889999999998876544
No 73
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.13 E-value=9.9e-10 Score=116.40 Aligned_cols=156 Identities=21% Similarity=0.327 Sum_probs=108.3
Q ss_pred ceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 44 mkI~IIG-aGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
|||+||| +|.||+++|..|... | ++|++|+|+++.++... ..
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~-G-----~~V~v~~r~~~~~~~~a--------~~----------------------- 43 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEK-G-----FEVIVTGRDPKKGKEVA--------KE----------------------- 43 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHC-C-----CEEEEEECChHHHHHHH--------HH-----------------------
Confidence 7999998 799999999999998 8 89999999876432210 00
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
+ ++.+++++++++.++|+||+|||.+.+.++++++.+++++ ++++++++. +..
T Consensus 44 ---~--------------------gv~~~~~~~e~~~~aDvVIlavp~~~~~~vl~~l~~~l~~---~~iViDvsS-vK~ 96 (437)
T PRK08655 44 ---L--------------------GVEYANDNIDAAKDADIVIISVPINVTEDVIKEVAPHVKE---GSLLMDVTS-VKE 96 (437)
T ss_pred ---c--------------------CCeeccCHHHHhccCCEEEEecCHHHHHHHHHHHHhhCCC---CCEEEEccc-ccH
Confidence 0 2345567778889999999999999999999999998887 688887763 111
Q ss_pred ccccccccCCHHHHHHhHhCCCCCcEE---EEeCcchhHhhhccCceEEEEe--CChhHHHHHHHHhcCCCceEEecC
Q 012547 203 ELEAVPRIITPTQMINRATGVPIENIL---YLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNG 275 (461)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~~v~---vlsGPn~a~ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~ 275 (461)
.+.+.+.+.++.. ..++ .+.||+.+. ..+.....+.. .+++..+.++++|+..|.+++..+
T Consensus 97 ---------~~~~~l~~~~~~~-~~~V~~HPmaGp~~~~--~~g~~~il~p~~~~~~~~~~~v~~ll~~~G~~v~~~~ 162 (437)
T PRK08655 97 ---------RPVEAMEEYAPEG-VEILPTHPMFGPRTPS--LKGQVVILTPTEKRSNPWFDKVKNFLEKEGARVIVTS 162 (437)
T ss_pred ---------HHHHHHHHhcCCC-CEEEEcCCCCCCCCcc--cCCCEEEEecCCCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 1234566655421 1211 234566542 34443332322 346778999999999999988654
No 74
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.09 E-value=2.4e-09 Score=115.26 Aligned_cols=179 Identities=18% Similarity=0.196 Sum_probs=111.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
...||+|||+|.||+.||..++.+ | ++|++|+++++.++.... ++...++... .+. .+....
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~a-G-----~~V~l~d~~~e~l~~~~~-~i~~~l~~~~------~~G--~~~~~~--- 65 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASA-G-----HQVLLYDIRAEALARAIA-GIEARLNSLV------TKG--KLTAEE--- 65 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-HHHHHHHHHH------hcC--CCCHHH---
Confidence 346899999999999999999999 8 999999999988765321 1111111100 000 010000
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc--hhHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS--TETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps--~~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
++ ..+.++..++|+++ +.+||+||.|+|. ...+.++.++.+++++ ++++.|.+.+
T Consensus 66 ------~~-------------~~~~~i~~~~~~~~-l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~---~~IlasnTSt 122 (503)
T TIGR02279 66 ------CE-------------RTLKRLIPVTDLHA-LADAGLVIEAIVENLEVKKALFAQLEELCPA---DTIIASNTSS 122 (503)
T ss_pred ------HH-------------HHHhccEEeCCHHH-hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCC---CeEEEECCCC
Confidence 00 01125788899965 6799999999997 4566778888888887 6776666655
Q ss_pred CccccccccccCCHHHHHHhHhCCCCCcEE--EEeCcchhHhhhccCceEEEEeC---ChhHHHHHHHHhcCCCceEEec
Q 012547 200 VEAELEAVPRIITPTQMINRATGVPIENIL--YLGGPNIASEIYNKEYANARICG---AEKWRKPLAKFLRRPHFTVWDN 274 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~v~--vlsGPn~a~ev~~g~~~~~~~~~---~~~~~~~l~~ll~~~g~~v~~s 274 (461)
++.. + +.+.+..+ .++. -...|.... .... ++.+ +++..+.+.+++...|..+...
T Consensus 123 l~i~-----------~-iA~~~~~p-~r~~G~HFf~Papv~-----~LvE-vv~g~~Ts~e~~~~~~~l~~~lgk~pv~v 183 (503)
T TIGR02279 123 LSIT-----------A-IAAGLARP-ERVAGLHFFNPAPVM-----ALVE-VVSGLATAAEVAEQLYETALAWGKQPVHC 183 (503)
T ss_pred CCHH-----------H-HHHhcCcc-cceEEEeccCccccC-----ceEE-EeCCCCCCHHHHHHHHHHHHHcCCeeeEe
Confidence 5543 2 44555433 2211 111221111 1121 3344 6788899999999988887777
Q ss_pred CChHHH
Q 012547 275 GDLVTH 280 (461)
Q Consensus 275 ~Di~gv 280 (461)
.|.-|-
T Consensus 184 ~d~pGf 189 (503)
T TIGR02279 184 HSTPGF 189 (503)
T ss_pred CCCCCc
Confidence 776553
No 75
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.09 E-value=1.9e-09 Score=107.11 Aligned_cols=161 Identities=15% Similarity=0.198 Sum_probs=97.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|||+|||+|.||+++|..|.++ |+ ..+|+.|+|+++.++... . . +
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~-g~---~~~v~~~d~~~~~~~~~~---------~--------------~-g------- 45 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEK-GL---ISKVYGYDHNELHLKKAL---------E--------------L-G------- 45 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhc-CC---CCEEEEEcCCHHHHHHHH---------H--------------C-C-------
Confidence 6899999999999999999988 72 137888898876544210 0 0 0
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
-+....+++++. ++|+||+|||++.+.++++++.+ +++ +++|+.+ |....
T Consensus 46 -----------------------~~~~~~~~~~~~-~aD~Vilavp~~~~~~~~~~l~~-l~~---~~iv~d~--gs~k~ 95 (275)
T PRK08507 46 -----------------------LVDEIVSFEELK-KCDVIFLAIPVDAIIEILPKLLD-IKE---NTTIIDL--GSTKA 95 (275)
T ss_pred -----------------------CCcccCCHHHHh-cCCEEEEeCcHHHHHHHHHHHhc-cCC---CCEEEEC--ccchH
Confidence 011123555644 59999999999999999999998 776 6777653 22211
Q ss_pred cccccccCCHHHHHHhHhCCC---CCcEE--EEeCcchhH-hhhccCceEEEEe--CChhHHHHHHHHhcCCCceEEecC
Q 012547 204 LEAVPRIITPTQMINRATGVP---IENIL--YLGGPNIAS-EIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNG 275 (461)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~~---~~~v~--vlsGPn~a~-ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~ 275 (461)
.+.+.+.+..+.. .++.+ -.+||..+. ....|.....+.. .+++..+.+.++|+..|.++...+
T Consensus 96 --------~i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~ 167 (275)
T PRK08507 96 --------KIIESVPKHIRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMD 167 (275)
T ss_pred --------HHHHHHHHhcCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeC
Confidence 1223333321110 01110 112343332 2334544333322 345678899999999998877666
Q ss_pred Ch
Q 012547 276 DL 277 (461)
Q Consensus 276 Di 277 (461)
.-
T Consensus 168 ~~ 169 (275)
T PRK08507 168 AK 169 (275)
T ss_pred HH
Confidence 43
No 76
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.08 E-value=3e-09 Score=107.38 Aligned_cols=166 Identities=21% Similarity=0.160 Sum_probs=102.4
Q ss_pred CCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhh
Q 012547 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (461)
Q Consensus 39 ~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~ 118 (461)
..-..+||+|||+|.||.++|..|.+. |+ .++|++|+|+++.++.+. . . +.
T Consensus 2 ~~~~~~~I~IIG~G~mG~sla~~l~~~-g~---~~~V~~~dr~~~~~~~a~---------~--------------~-g~- 52 (307)
T PRK07502 2 SAPLFDRVALIGIGLIGSSLARAIRRL-GL---AGEIVGADRSAETRARAR---------E--------------L-GL- 52 (307)
T ss_pred CccCCcEEEEEeeCHHHHHHHHHHHhc-CC---CcEEEEEECCHHHHHHHH---------h--------------C-CC-
Confidence 333457999999999999999999988 72 148999999986544211 0 0 00
Q ss_pred hhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEee
Q 012547 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 119 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tk 198 (461)
....+.+++++++++|+||+|+|+..+.++++++.+++++ +++|+ ...
T Consensus 53 ----------------------------~~~~~~~~~~~~~~aDvViiavp~~~~~~v~~~l~~~l~~---~~iv~-dvg 100 (307)
T PRK07502 53 ----------------------------GDRVTTSAAEAVKGADLVILCVPVGASGAVAAEIAPHLKP---GAIVT-DVG 100 (307)
T ss_pred ----------------------------CceecCCHHHHhcCCCEEEECCCHHHHHHHHHHHHhhCCC---CCEEE-eCc
Confidence 1123456667788999999999999999999999988876 55544 333
Q ss_pred cCccccccccccCCHHHHHHhHhCCCCCcEE---EE-----eCcchhH-hhhccCceEEEE--eCChhHHHHHHHHhcCC
Q 012547 199 GVEAELEAVPRIITPTQMINRATGVPIENIL---YL-----GGPNIAS-EIYNKEYANARI--CGAEKWRKPLAKFLRRP 267 (461)
Q Consensus 199 Gi~~~~~~~~~~~~~se~i~~~lg~~~~~v~---vl-----sGPn~a~-ev~~g~~~~~~~--~~~~~~~~~l~~ll~~~ 267 (461)
++... +.+.+.+.++. ..++. .+ +||..+. ++..|.+..++. +.+++..+.+.++|+..
T Consensus 101 s~k~~---------~~~~~~~~~~~-~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~~~~~~~~l~~~l 170 (307)
T PRK07502 101 SVKAS---------VIAAMAPHLPE-GVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDPAAVARLTAFWRAL 170 (307)
T ss_pred cchHH---------HHHHHHHhCCC-CCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 33222 11223333321 11111 11 2333221 333444333332 23566788899999999
Q ss_pred CceEEecC
Q 012547 268 HFTVWDNG 275 (461)
Q Consensus 268 g~~v~~s~ 275 (461)
|.+++..+
T Consensus 171 G~~~~~~~ 178 (307)
T PRK07502 171 GARVEEMD 178 (307)
T ss_pred CCEEEEcC
Confidence 98876643
No 77
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.06 E-value=8e-09 Score=103.64 Aligned_cols=179 Identities=18% Similarity=0.167 Sum_probs=109.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
+.||+|||+|.||..||..++.+ | ++|++|+++++.++.... ++...++... .+. .+...
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~-G-----~~V~l~d~~~~~~~~~~~-~i~~~~~~~~------~~g--~~~~~----- 64 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARA-G-----VDVLVFETTEELATAGRN-RIEKSLERAV------SRG--KLTER----- 64 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhC-C-----CEEEEEECCHHHHHHHHH-HHHHHHHHHH------hcc--cCChh-----
Confidence 35899999999999999999999 8 999999999988765321 2221211110 000 01000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch--hHHHHHHHHHHHh-hccCCCCEEEEEeec
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYW-KERITVPVIISLAKG 199 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~--~~~~vl~~i~~~l-~~~~~~~iIIs~tkG 199 (461)
.. +..+..++.++|++ ++++||+||.|+|.+ ..+.++.++..++ ++ +++++|.+.+
T Consensus 65 --~~---------------~~~~~~l~~~~~~~-~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~---~~il~snTS~ 123 (286)
T PRK07819 65 --ER---------------DAALARLRFTTDLG-DFADRQLVIEAVVEDEAVKTEIFAELDKVVTDP---DAVLASNTSS 123 (286)
T ss_pred --hH---------------HHHHhCeEeeCCHH-HhCCCCEEEEecccCHHHHHHHHHHHHHhhCCC---CcEEEECCCC
Confidence 00 00113678889994 589999999999975 5667788888888 66 7888887766
Q ss_pred CccccccccccCCHHHHHHhHhCCCCCcEE--EEeCcchhHhhhccCceEEEE--eCChhHHHHHHHHhc-CCCceEEec
Q 012547 200 VEAELEAVPRIITPTQMINRATGVPIENIL--YLGGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLR-RPHFTVWDN 274 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~v~--vlsGPn~a~ev~~g~~~~~~~--~~~~~~~~~l~~ll~-~~g~~v~~s 274 (461)
+... .+......+ .++. -...|... .. ...++. ..+++..+.+..++. ..+..+...
T Consensus 124 ~~~~------------~la~~~~~~-~r~~g~hf~~P~~~---~~--lvElv~~~~T~~~~~~~~~~~~~~~lgk~pv~v 185 (286)
T PRK07819 124 IPIM------------KLAAATKRP-GRVLGLHFFNPVPV---LP--LVELVPTLVTSEATVARAEEFASDVLGKQVVRA 185 (286)
T ss_pred CCHH------------HHHhhcCCC-ccEEEEecCCCccc---Cc--eEEEeCCCCCCHHHHHHHHHHHHHhCCCCceEe
Confidence 6554 244444432 2321 11222211 11 112232 346778888888866 466665555
Q ss_pred CChHHH
Q 012547 275 GDLVTH 280 (461)
Q Consensus 275 ~Di~gv 280 (461)
.|.-|-
T Consensus 186 ~d~pGf 191 (286)
T PRK07819 186 QDRSGF 191 (286)
T ss_pred cCCCCh
Confidence 665443
No 78
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.02 E-value=1.1e-08 Score=110.42 Aligned_cols=178 Identities=15% Similarity=0.164 Sum_probs=110.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
...||+|||+|.||..||..++.+ | ++|++|+++++.++...+ ++.+.++.... +. .+...
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~a-G-----~~V~l~D~~~e~l~~~~~-~i~~~l~~~~~------~G--~~~~~---- 66 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQA-G-----HTVLLYDARAGAAAAARD-GIAARLAKLVE------KG--KLTAE---- 66 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-HHHHHHHHHHH------cC--CCCHH----
Confidence 346899999999999999999999 8 999999999988775321 11111111000 00 01000
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch--hHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~--~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
. .+..+..+..++|+++ +.+||+||.|||.. ..+.++.++..++++ ++++.|.+.+
T Consensus 67 ---~---------------~~~~~~~i~~~~~~~~-~~~aDlViEav~E~~~vK~~vf~~l~~~~~~---~ailasntSt 124 (507)
T PRK08268 67 ---Q---------------ADAALARLRPVEALAD-LADCDLVVEAIVERLDVKQALFAQLEAIVSP---DCILATNTSS 124 (507)
T ss_pred ---H---------------HHHHHhCeEEeCCHHH-hCCCCEEEEcCcccHHHHHHHHHHHHhhCCC---CcEEEECCCC
Confidence 0 0001135788889876 67999999999974 455667888887776 6777677766
Q ss_pred CccccccccccCCHHHHHHhHhCCCCCcEE--EEeCcchhHhhhccCceEEEEe---CChhHHHHHHHHhcCCCceEEec
Q 012547 200 VEAELEAVPRIITPTQMINRATGVPIENIL--YLGGPNIASEIYNKEYANARIC---GAEKWRKPLAKFLRRPHFTVWDN 274 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~v~--vlsGPn~a~ev~~g~~~~~~~~---~~~~~~~~l~~ll~~~g~~v~~s 274 (461)
+++. + +.+.+..+ .++. -...|.... .... ++. .+++..+.+..++...+..+...
T Consensus 125 l~i~-----------~-la~~~~~p-~r~~G~hff~Pa~v~-----~LvE-vv~g~~Ts~~~~~~~~~l~~~lgk~pv~v 185 (507)
T PRK08268 125 LSIT-----------A-IAAALKHP-ERVAGLHFFNPVPLM-----KLVE-VVSGLATDPAVADALYALARAWGKTPVRA 185 (507)
T ss_pred CCHH-----------H-HHhhcCCc-ccEEEEeecCCcccC-----eeEE-EeCCCCCCHHHHHHHHHHHHHcCCceEEe
Confidence 6553 2 55555433 2211 112222211 1222 232 36778888999998888777666
Q ss_pred CChHH
Q 012547 275 GDLVT 279 (461)
Q Consensus 275 ~Di~g 279 (461)
.|.-|
T Consensus 186 ~d~pG 190 (507)
T PRK08268 186 KDTPG 190 (507)
T ss_pred cCCCC
Confidence 77655
No 79
>PLN02256 arogenate dehydrogenase
Probab=99.01 E-value=6.1e-09 Score=105.41 Aligned_cols=170 Identities=15% Similarity=0.130 Sum_probs=112.2
Q ss_pred hhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhh
Q 012547 24 SLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDV 103 (461)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~ 103 (461)
..|.||.|== .+.+.|+|+|||+|.||.++|..|.+. | ++|.+|+++... +. ...
T Consensus 22 ~~~~~~~~~~-----~~~~~~kI~IIG~G~mG~slA~~L~~~-G-----~~V~~~d~~~~~-~~---------a~~---- 76 (304)
T PLN02256 22 DYESRLQEEL-----EKSRKLKIGIVGFGNFGQFLAKTFVKQ-G-----HTVLATSRSDYS-DI---------AAE---- 76 (304)
T ss_pred ChHhHHhHhh-----ccCCCCEEEEEeeCHHHHHHHHHHHhC-C-----CEEEEEECccHH-HH---------HHH----
Confidence 3566666532 233568999999999999999999988 7 899999988531 10 000
Q ss_pred HHhhhhcccccchhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHh-cCCCEEEEcCCchhHHHHHHHH-H
Q 012547 104 LRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVINGLPSTETKEVFEEI-S 181 (461)
Q Consensus 104 ~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av-~~aDiIIiaVps~~~~~vl~~i-~ 181 (461)
. ++...++.++++ .++|+||+|||++.+.++++++ .
T Consensus 77 ----------~--------------------------------gv~~~~~~~e~~~~~aDvVilavp~~~~~~vl~~l~~ 114 (304)
T PLN02256 77 ----------L--------------------------------GVSFFRDPDDFCEEHPDVVLLCTSILSTEAVLRSLPL 114 (304)
T ss_pred ----------c--------------------------------CCeeeCCHHHHhhCCCCEEEEecCHHHHHHHHHhhhh
Confidence 0 123345666665 4799999999999999999998 5
Q ss_pred HHhhccCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhcc----CceEEEE------e
Q 012547 182 RYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNK----EYANARI------C 251 (461)
Q Consensus 182 ~~l~~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g----~~~~~~~------~ 251 (461)
+++++ +++|++++.+=.. +.+.+.+.++.. .+ .+...|.+..+.+.+ .+.+... .
T Consensus 115 ~~l~~---~~iviDv~SvK~~----------~~~~~~~~l~~~-~~-~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~ 179 (304)
T PLN02256 115 QRLKR---STLFVDVLSVKEF----------PKNLLLQVLPEE-FD-ILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEG 179 (304)
T ss_pred hccCC---CCEEEecCCchHH----------HHHHHHHhCCCC-Ce-EEecCCCCCCCCCccccCCCeEEEecceecCCC
Confidence 66776 6888877752111 124466666421 22 466778887775532 2211111 1
Q ss_pred CChhHHHHHHHHhcCCCceEEecC
Q 012547 252 GAEKWRKPLAKFLRRPHFTVWDNG 275 (461)
Q Consensus 252 ~~~~~~~~l~~ll~~~g~~v~~s~ 275 (461)
.+++..+.+.+++...|-++...+
T Consensus 180 ~~~~~~~~l~~l~~~lGa~v~~~~ 203 (304)
T PLN02256 180 EREARCERFLDIFEEEGCRMVEMS 203 (304)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEeC
Confidence 145667889999998888776554
No 80
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=98.99 E-value=7.8e-09 Score=104.22 Aligned_cols=181 Identities=19% Similarity=0.202 Sum_probs=113.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
.+||+|||+|.||+.+|..+|.. | ++|++++++++.+++.... +...+++.. .. -.+....
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~-G-----~~V~l~D~~~~~~~~~~~~-i~~~l~k~~-------~~-g~l~~~~---- 63 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALA-G-----YDVVLKDISPEALERALAY-IEKNLEKLV-------EK-GKLTEEE---- 63 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhc-C-----CceEEEeCCHHHHHHHHHH-HHHHHHHHH-------hc-CCCChhh----
Confidence 47999999999999999999997 8 9999999998877654321 111111100 00 0111100
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch--hHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~--~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
.+..+..+..++|+. ++++||+||.+|+.. ..++++.++..++++ ++++-|.|.++
T Consensus 64 ------------------~~~~l~~i~~~~~~~-~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~---~aIlASNTSsl 121 (307)
T COG1250 64 ------------------ADAALARITPTTDLA-ALKDADLVIEAVVEDLELKKQVFAELEALAKP---DAILASNTSSL 121 (307)
T ss_pred ------------------HHHHHhhccccCchh-HhccCCEEEEeccccHHHHHHHHHHHHhhcCC---CcEEeeccCCC
Confidence 001123677788886 689999999999975 688999999999988 78998888887
Q ss_pred ccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEe--CChhHHHHHHHHhcCCCceEEecCChH
Q 012547 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di~ 278 (461)
+.. + +.+.+..| .++..+ .|-..+..-....++.+ .+++..+.+.++..+-+..+....|.-
T Consensus 122 ~it-----------~-ia~~~~rp-er~iG~---HFfNP~~~m~LVEvI~g~~T~~e~~~~~~~~~~~igK~~vv~~D~p 185 (307)
T COG1250 122 SIT-----------E-LAEALKRP-ERFIGL---HFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTPVVVKDVP 185 (307)
T ss_pred CHH-----------H-HHHHhCCc-hhEEEE---eccCCCCcceeEEEecCCCCCHHHHHHHHHHHHHcCCCCEeecCCC
Confidence 765 3 55555543 343211 22111111111222222 246778888888877775545556665
Q ss_pred HH
Q 012547 279 TH 280 (461)
Q Consensus 279 gv 280 (461)
|-
T Consensus 186 GF 187 (307)
T COG1250 186 GF 187 (307)
T ss_pred ce
Confidence 53
No 81
>PRK06545 prephenate dehydrogenase; Validated
Probab=98.97 E-value=9.5e-09 Score=106.25 Aligned_cols=160 Identities=14% Similarity=0.103 Sum_probs=102.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
++|+|||+|.||+++|..|.++ | ++|.+|+++++..+.. .. .+.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~-G-----~~v~i~~~~~~~~~~~---------~a---------------~~~------ 44 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA-G-----PDVFIIGYDPSAAQLA---------RA---------------LGF------ 44 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc-C-----CCeEEEEeCCCHHHHH---------HH---------------hcC------
Confidence 4799999999999999999998 8 8999999987643210 00 000
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHH-hhccCCCCEEEEEeecCcc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY-WKERITVPVIISLAKGVEA 202 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~-l~~~~~~~iIIs~tkGi~~ 202 (461)
++ .-..++++++++++||+||+|||++.+.++++++.+. +++ ++ +|+.+.++..
T Consensus 45 ---------------~~------~~~~~~~~~~~~~~aDlVilavP~~~~~~vl~~l~~~~l~~---~~-ivtDv~SvK~ 99 (359)
T PRK06545 45 ---------------GV------IDELAADLQRAAAEADLIVLAVPVDATAALLAELADLELKP---GV-IVTDVGSVKG 99 (359)
T ss_pred ---------------CC------CcccccCHHHHhcCCCEEEEeCCHHHHHHHHHHHhhcCCCC---Cc-EEEeCccccH
Confidence 00 0123467788889999999999999999999999873 665 44 5554545433
Q ss_pred ccccccccCCHHHHHHhHhCCCCCcEE--------EEeCcchhH-hhhccCceEEEEe--CChhHHHHHHHHhcCCCceE
Q 012547 203 ELEAVPRIITPTQMINRATGVPIENIL--------YLGGPNIAS-EIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTV 271 (461)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~~v~--------vlsGPn~a~-ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v 271 (461)
. +.+.+++.++.. .++. ..+||..+. ++..+.+..++.. .+++..+.++++|+..|.++
T Consensus 100 ~---------i~~~~~~~~~~~-~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~ 169 (359)
T PRK06545 100 A---------ILAEAEALLGDL-IRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDAVAELKDLLSGTGAKF 169 (359)
T ss_pred H---------HHHHHHHhcCCC-CeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHHHHHHHHHHHHcCCEE
Confidence 2 123334432211 1111 123333333 4455654444432 35677889999999999877
Q ss_pred Eec
Q 012547 272 WDN 274 (461)
Q Consensus 272 ~~s 274 (461)
+..
T Consensus 170 v~~ 172 (359)
T PRK06545 170 VVL 172 (359)
T ss_pred EEC
Confidence 543
No 82
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.95 E-value=1.7e-08 Score=113.16 Aligned_cols=180 Identities=13% Similarity=0.114 Sum_probs=117.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
.||+|||+|.||..||..++.+ | ++|++++++++.++.... ++...+.... .+. .+...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~-G-----~~V~l~d~~~~~l~~~~~-~~~~~l~~~~------~~g--~~~~~------ 372 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASK-G-----VPVIMKDINQKALDLGMT-EAAKLLNKQV------ERG--KIDGA------ 372 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-HHHHHHHHHH------HcC--CCChh------
Confidence 6899999999999999999999 8 999999999987764321 1111111110 000 01100
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch--hHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~--~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
. + +.....++.++|++ ++++||+||.|||.+ ..++++.++.+++++ ++++.|.|.+++
T Consensus 373 -~--~-------------~~~~~~i~~~~~~~-~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~---~~ilasNTSsl~ 432 (715)
T PRK11730 373 -K--M-------------AGVLSSIRPTLDYA-GFERVDVVVEAVVENPKVKAAVLAEVEQKVRE---DTILASNTSTIS 432 (715)
T ss_pred -h--H-------------HHHHhCeEEeCCHH-HhcCCCEEEecccCcHHHHHHHHHHHHhhCCC---CcEEEEcCCCCC
Confidence 0 0 00123688899985 579999999999975 788999999999998 788888887776
Q ss_pred cccccccccCCHHHHHHhHhCCCCCcEEEE--eCcchhHhhhccCceEEEEe--CChhHHHHHHHHhcCCCceEEecCCh
Q 012547 202 AELEAVPRIITPTQMINRATGVPIENILYL--GGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDL 277 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~v~vl--sGPn~a~ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di 277 (461)
.. + |.+.+..| .++..+ ..|-. .-....++.+ .+++..+.+.+++...|..+....|.
T Consensus 433 i~-----------~-la~~~~~p-~r~~g~Hff~P~~-----~~~lVEvv~g~~T~~~~~~~~~~~~~~lgk~pv~v~d~ 494 (715)
T PRK11730 433 IS-----------L-LAKALKRP-ENFCGMHFFNPVH-----RMPLVEVIRGEKTSDETIATVVAYASKMGKTPIVVNDC 494 (715)
T ss_pred HH-----------H-HHhhcCCC-ccEEEEecCCccc-----ccceEEeeCCCCCCHHHHHHHHHHHHHhCCceEEecCc
Confidence 54 3 55555543 333221 22221 1111222222 25677888888888888877777887
Q ss_pred HHHHH
Q 012547 278 VTHEV 282 (461)
Q Consensus 278 ~gve~ 282 (461)
-|-..
T Consensus 495 pGfv~ 499 (715)
T PRK11730 495 PGFFV 499 (715)
T ss_pred CchhH
Confidence 76433
No 83
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=98.94 E-value=3.4e-08 Score=98.23 Aligned_cols=194 Identities=14% Similarity=0.085 Sum_probs=131.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
++||+-||||.+|+.-...+|.. ||...|++++.+..+..+||.+. -|.|.|++.
T Consensus 1 ~~kiccigagyvggptcavia~k----cp~i~vtvvd~s~~ri~~wnsd~-----------------lpiyepgld---- 55 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALK----CPDIEVTVVDISVPRINAWNSDK-----------------LPIYEPGLD---- 55 (481)
T ss_pred CceEEEecCcccCCcchheeeec----CCceEEEEEecCchHhhcccCCC-----------------CcccCCCHH----
Confidence 47999999999999988888855 45578999999998887766543 367888753
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcC--Cc-------------hhHHHHHHHHHHHhhcc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PS-------------TETKEVFEEISRYWKER 187 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaV--ps-------------~~~~~vl~~i~~~l~~~ 187 (461)
|+|.+-. ..++.+++|.+.++++||+||+.| |. .+.+++.+.|+.+-..
T Consensus 56 -------evv~~cr--------gknlffstdiekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~- 119 (481)
T KOG2666|consen 56 -------EVVKQCR--------GKNLFFSTDIEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVS- 119 (481)
T ss_pred -------HHHHHhc--------CCceeeecchHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccC-
Confidence 4555421 136789999999999999999987 33 2688888888876543
Q ss_pred CCCCEEEEEeecCccccccccccCCHHHHHHhHhCC--CCCcEEEEeCcchhHhhhcc----CceEEEEeCC--h---hH
Q 012547 188 ITVPVIISLAKGVEAELEAVPRIITPTQMINRATGV--PIENILYLGGPNIASEIYNK----EYANARICGA--E---KW 256 (461)
Q Consensus 188 ~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~--~~~~v~vlsGPn~a~ev~~g----~~~~~~~~~~--~---~~ 256 (461)
++++ +-|...+- .-.|.|.+.+.. +...+-+++.|.|..|...- +|..+.+++. + +.
T Consensus 120 --~kiv--vekstvpv--------~aaesi~~il~~n~~~i~fqilsnpeflaegtaikdl~npdrvligg~etpeg~~a 187 (481)
T KOG2666|consen 120 --DKIV--VEKSTVPV--------KAAESIEKILNHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGFQA 187 (481)
T ss_pred --CeEE--Eeeccccc--------hHHHHHHHHHhcCCCCceeEeccChHHhcccchhhhhcCCceEEECCCCChhHHHH
Confidence 4433 44554443 123556665531 23456789999998875532 3555666653 2 34
Q ss_pred HHHHHHHhcCCCc-eEEecCChHHHHHHHHHHHH
Q 012547 257 RKPLAKFLRRPHF-TVWDNGDLVTHEVMGGLKNV 289 (461)
Q Consensus 257 ~~~l~~ll~~~g~-~v~~s~Di~gve~~galKNv 289 (461)
.+.+..++...-- .-.++++.+..|+.++..|.
T Consensus 188 v~~l~~vyehwvp~~~iittntwsselsklaana 221 (481)
T KOG2666|consen 188 VQALKDVYEHWVPREQIITTNTWSSELSKLAANA 221 (481)
T ss_pred HHHHHHHHHhhCcccceeeccccHHHHHHHHHHH
Confidence 5666666654221 12356777888998877776
No 84
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.91 E-value=4.5e-08 Score=109.45 Aligned_cols=183 Identities=16% Similarity=0.186 Sum_probs=116.6
Q ss_pred CceEEEECccHHHHHHHHHHH-HhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQ-DSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La-~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
..||+|||+|.||+.||..++ .+ | ++|++++.+++.++.... .+...+.... +. ..+..-.
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~-G-----~~V~l~d~~~~~l~~~~~-~~~~~l~~~~-------~~-~~~~~~~--- 365 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKA-G-----IPVRIKDINPQGINNALK-YAWKLLDKGV-------KR-RHMTPAE--- 365 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHc-C-----CeEEEEeCCHHHHHHHHH-HHHHHHHHHH-------Hc-CCCCHHH---
Confidence 368999999999999999998 57 8 999999999887665321 1111111100 00 0011000
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch--hHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~--~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
+ +.....++.++|++ ++++||+||.|||.. ..++++.++.+++++ ++++.|.|.+
T Consensus 366 ------~-------------~~~~~~i~~~~~~~-~~~~adlViEav~E~l~~K~~v~~~l~~~~~~---~~ilasnTS~ 422 (699)
T TIGR02440 366 ------R-------------DNQMALITGTTDYR-GFKDVDIVIEAVFEDLALKHQMVKDIEQECAA---HTIFASNTSS 422 (699)
T ss_pred ------H-------------HHHHcCeEEeCChH-HhccCCEEEEeccccHHHHHHHHHHHHhhCCC---CcEEEeCCCC
Confidence 0 00113688889985 589999999999975 678899999999988 7888888877
Q ss_pred CccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEe--CChhHHHHHHHHhcCCCceEEecCCh
Q 012547 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDL 277 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di 277 (461)
++.. + |.+.+..| .++..+ .|......-....++.+ .+++..+.+.+++...|.......|.
T Consensus 423 l~i~-----------~-la~~~~~p-~r~~g~---HffnP~~~~~lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv~v~d~ 486 (699)
T TIGR02440 423 LPIG-----------Q-IAAAASRP-ENVIGL---HYFSPVEKMPLVEVIPHAGTSEQTIATTVALAKKQGKTPIVVADK 486 (699)
T ss_pred CCHH-----------H-HHHhcCCc-ccEEEE---ecCCccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEccc
Confidence 7664 3 55555443 343221 22111111112222222 35678888999999888887777887
Q ss_pred HHHHH
Q 012547 278 VTHEV 282 (461)
Q Consensus 278 ~gve~ 282 (461)
-|-..
T Consensus 487 pGfi~ 491 (699)
T TIGR02440 487 AGFYV 491 (699)
T ss_pred cchHH
Confidence 66433
No 85
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.90 E-value=3.9e-08 Score=110.14 Aligned_cols=181 Identities=15% Similarity=0.170 Sum_probs=114.6
Q ss_pred CceEEEECccHHHHHHHHHHH-HhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQ-DSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La-~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
..||+|||+|.||..||..++ .+ | ++|++++++++.++.... .+.+.+.... +. ..+....
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~-G-----~~V~l~d~~~~~l~~~~~-~~~~~l~~~~-------~~-~~~~~~~--- 370 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKA-G-----LPVRIKDINPQGINHALK-YSWDLLDKKV-------KR-RHLKPSE--- 370 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHc-C-----CeEEEEeCCHHHHHHHHH-HHHHHHHHHH-------Hc-CCCCHHH---
Confidence 378999999999999999999 77 8 999999999887664321 1111111100 00 0011000
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch--hHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~--~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
+ +.....+..++|++ ++++||+||.|||.+ ..++++.++.+++++ ++++.|.|.+
T Consensus 371 ------~-------------~~~~~~i~~~~~~~-~~~~aDlViEav~E~~~~K~~v~~~le~~~~~---~~ilasnTS~ 427 (708)
T PRK11154 371 ------R-------------DKQMALISGTTDYR-GFKHADVVIEAVFEDLALKQQMVAEVEQNCAP---HTIFASNTSS 427 (708)
T ss_pred ------H-------------HHHHhcEEEeCChH-HhccCCEEeecccccHHHHHHHHHHHHhhCCC---CcEEEECCCC
Confidence 0 00123688899984 689999999999975 688999999999998 7888888877
Q ss_pred CccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEe--CChhHHHHHHHHhcCCCceEEecCCh
Q 012547 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDL 277 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di 277 (461)
++.. + |.+.+..| .++..+ .|......-....++.+ .+++..+.+.+++...|.......|.
T Consensus 428 l~i~-----------~-la~~~~~p-~r~ig~---Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~ 491 (708)
T PRK11154 428 LPIG-----------Q-IAAAAARP-EQVIGL---HYFSPVEKMPLVEVIPHAKTSAETIATTVALAKKQGKTPIVVRDG 491 (708)
T ss_pred CCHH-----------H-HHHhcCcc-cceEEE---ecCCccccCceEEEECCCCCCHHHHHHHHHHHHHcCCceEEEecc
Confidence 7654 3 55555443 333222 12111111112222322 35677888888888888866666776
Q ss_pred HHH
Q 012547 278 VTH 280 (461)
Q Consensus 278 ~gv 280 (461)
-|-
T Consensus 492 pGf 494 (708)
T PRK11154 492 AGF 494 (708)
T ss_pred CcH
Confidence 554
No 86
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.88 E-value=4.9e-08 Score=109.35 Aligned_cols=181 Identities=13% Similarity=0.105 Sum_probs=116.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
..||+|||+|.||..||..++.+ | ++|++++++++.+++..+ .+...++... ....+...
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~-G-----~~V~l~d~~~~~l~~~~~-~~~~~~~~~~--------~~g~~~~~----- 372 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASK-G-----TPIVMKDINQHSLDLGLT-EAAKLLNKQV--------ERGRITPA----- 372 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-HHHHHHHHHH--------HcCCCChh-----
Confidence 46899999999999999999999 8 999999999988765321 1111111110 00001100
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch--hHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~--~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
. .+.....++.++|++ ++++||+||.|||.+ ..++++.++.+++++ ++++.|.|.++
T Consensus 373 --~---------------~~~~~~~i~~~~~~~-~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~---~~ilasnTS~l 431 (714)
T TIGR02437 373 --K---------------MAGVLNGITPTLSYA-GFDNVDIVVEAVVENPKVKAAVLAEVEQHVRE---DAILASNTSTI 431 (714)
T ss_pred --h---------------HHHHHhCeEEeCCHH-HhcCCCEEEEcCcccHHHHHHHHHHHHhhCCC---CcEEEECCCCC
Confidence 0 000123688889985 579999999999975 688999999999998 78888888776
Q ss_pred ccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEe--CChhHHHHHHHHhcCCCceEEecCChH
Q 012547 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di~ 278 (461)
+.. + |.+.+..| .++..+ .|......-....++.+ .+++..+.+.+++...|.......|.-
T Consensus 432 ~i~-----------~-ia~~~~~p-~r~ig~---Hff~P~~~~~lvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~p 495 (714)
T TIGR02437 432 SIS-----------L-LAKALKRP-ENFCGM---HFFNPVHRMPLVEVIRGEKSSDETIATVVAYASKMGKTPIVVNDCP 495 (714)
T ss_pred CHH-----------H-HHhhcCCc-ccEEEE---ecCCCcccCceEeecCCCCCCHHHHHHHHHHHHHcCCEEEEeCCcc
Confidence 654 3 55555543 333221 22111111111222222 356778888888888888777777876
Q ss_pred HH
Q 012547 279 TH 280 (461)
Q Consensus 279 gv 280 (461)
|-
T Consensus 496 Gf 497 (714)
T TIGR02437 496 GF 497 (714)
T ss_pred cc
Confidence 64
No 87
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.83 E-value=5.4e-08 Score=109.31 Aligned_cols=181 Identities=16% Similarity=0.155 Sum_probs=117.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
..+|+|||+|.||..||..++.+ | ++|++++++++.+++... ++.+.+.... ++ ..+....
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~-G-----~~V~l~d~~~~~l~~~~~-~i~~~l~~~~------~~--g~~~~~~---- 395 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDK-G-----LKTVLKDATPAGLDRGQQ-QVFKGLNKKV------KR--KKITSLE---- 395 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhC-C-----CcEEEecCCHHHHHHHHH-HHHHHHHHHH------Hc--CCCCHHH----
Confidence 46899999999999999999999 8 999999999988775321 1111111110 00 0111000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch--hHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~--~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
. +.....+..++|++ ++++||+||.|||.+ ..++++.++.+++++ ++++.|.|.++
T Consensus 396 -----~-------------~~~~~~i~~~~~~~-~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~---~~ilasNTSsl 453 (737)
T TIGR02441 396 -----R-------------DSILSNLTPTLDYS-GFKNADMVIEAVFEDLSLKHKVIKEVEAVVPP---HCIIASNTSAL 453 (737)
T ss_pred -----H-------------HHHHhCeEEeCCHH-HhccCCeehhhccccHHHHHHHHHHHHhhCCC---CcEEEEcCCCC
Confidence 0 00123688889996 579999999999975 688999999999998 78888888777
Q ss_pred ccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEe--CChhHHHHHHHHhcCCCceEEecCChH
Q 012547 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di~ 278 (461)
+.. + |.+.+..| .++..+ .|......-....++.+ .+++..+.+.+++...|....+..|.-
T Consensus 454 ~i~-----------~-la~~~~~p-~r~ig~---Hff~P~~~m~LvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~p 517 (737)
T TIGR02441 454 PIK-----------D-IAAVSSRP-EKVIGM---HYFSPVDKMQLLEIITHDGTSKDTLASAVAVGLKQGKVVIVVKDGP 517 (737)
T ss_pred CHH-----------H-HHhhcCCc-cceEEE---eccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEECCcC
Confidence 654 3 55556544 333221 22111111112222222 356778888888888888777778876
Q ss_pred HH
Q 012547 279 TH 280 (461)
Q Consensus 279 gv 280 (461)
|-
T Consensus 518 GF 519 (737)
T TIGR02441 518 GF 519 (737)
T ss_pred Cc
Confidence 64
No 88
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.82 E-value=2.9e-09 Score=94.38 Aligned_cols=93 Identities=27% Similarity=0.494 Sum_probs=60.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEE-EecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRI-WRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l-~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
..|||+|||+|.+|++++..|.++ | +.|.- |+|+.+..+... .+++
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~a-g-----~~v~~v~srs~~sa~~a~----------------------~~~~----- 55 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARA-G-----HEVVGVYSRSPASAERAA----------------------AFIG----- 55 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHT-T-----SEEEEESSCHH-HHHHHH----------------------C--T-----
T ss_pred CccEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEEeCCcccccccc----------------------cccc-----
Confidence 358999999999999999999999 8 77764 567664433210 1111
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHH--hhccCCCCEEEEEe
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY--WKERITVPVIISLA 197 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~--l~~~~~~~iIIs~t 197 (461)
.. ...++.+.+.++|++|++||.+.+.+++++|..+ +.+ +++|+.++
T Consensus 56 --------------------------~~-~~~~~~~~~~~aDlv~iavpDdaI~~va~~La~~~~~~~---g~iVvHtS 104 (127)
T PF10727_consen 56 --------------------------AG-AILDLEEILRDADLVFIAVPDDAIAEVAEQLAQYGAWRP---GQIVVHTS 104 (127)
T ss_dssp --------------------------T------TTGGGCC-SEEEE-S-CCHHHHHHHHHHCC--S-T---T-EEEES-
T ss_pred --------------------------cc-cccccccccccCCEEEEEechHHHHHHHHHHHHhccCCC---CcEEEECC
Confidence 11 1234567789999999999999999999999986 555 67888777
No 89
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=98.79 E-value=7e-08 Score=100.43 Aligned_cols=143 Identities=24% Similarity=0.289 Sum_probs=94.1
Q ss_pred CCceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 42 DPLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 42 ~~mkI~IIG-aGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
..++|+||| +|.||+.+|..|.++ | ++|++|+++..
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~-G-----~~V~~~d~~~~------------------------------------- 133 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLS-G-----YQVRILEQDDW------------------------------------- 133 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHC-C-----CeEEEeCCCcc-------------------------------------
Confidence 448999999 999999999999999 8 99999997531
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
+++++++.+||+||+|||.....++++++.+ +++ +++|+.++ ++
T Consensus 134 -------------------------------~~~~~~~~~aDlVilavP~~~~~~~~~~l~~-l~~---~~iv~Dv~-Sv 177 (374)
T PRK11199 134 -------------------------------DRAEDILADAGMVIVSVPIHLTEEVIARLPP-LPE---DCILVDLT-SV 177 (374)
T ss_pred -------------------------------hhHHHHHhcCCEEEEeCcHHHHHHHHHHHhC-CCC---CcEEEECC-Cc
Confidence 0123456789999999999999999999988 776 67777664 22
Q ss_pred ccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeC-ChhHHHHHHHHhcCCCceEEecC
Q 012547 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG-AEKWRKPLAKFLRRPHFTVWDNG 275 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~-~~~~~~~l~~ll~~~g~~v~~s~ 275 (461)
... +.+.+.+..+.+....-.+.||.... ..+. ..+...+ +++..+.+.+++...|.++...+
T Consensus 178 K~~---------~~~~~~~~~~~~fvg~HPm~G~~~~~--~~~~-~vv~~~~~~~~~~~~~~~l~~~lG~~v~~~~ 241 (374)
T PRK11199 178 KNA---------PLQAMLAAHSGPVLGLHPMFGPDVGS--LAKQ-VVVVCDGRQPEAYQWLLEQIQVWGARLHRIS 241 (374)
T ss_pred cHH---------HHHHHHHhCCCCEEeeCCCCCCCCcc--cCCC-EEEEcCCCCchHHHHHHHHHHHCCCEEEECC
Confidence 111 22334443321100011256664421 2222 1222223 45667889999999998887655
No 90
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.72 E-value=1.3e-07 Score=106.42 Aligned_cols=157 Identities=17% Similarity=0.159 Sum_probs=100.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
.||+|||+|.||.+++..|... |. .++|++|+++++.++... +. +.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~-G~---~~~V~~~d~~~~~~~~a~---------~~---------------g~------ 49 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER-GL---AREVVAVDRRAKSLELAV---------SL---------------GV------ 49 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-CC---CCEEEEEECChhHHHHHH---------HC---------------CC------
Confidence 6899999999999999999988 62 147999999986544210 00 00
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
.....+++++++.++|+||+|||++.++++++++.+++++ ++ +|+...|+...
T Consensus 50 -----------------------~~~~~~~~~~~~~~aDvVilavp~~~~~~vl~~l~~~~~~---~~-ii~d~~svk~~ 102 (735)
T PRK14806 50 -----------------------IDRGEEDLAEAVSGADVIVLAVPVLAMEKVLADLKPLLSE---HA-IVTDVGSTKGN 102 (735)
T ss_pred -----------------------CCcccCCHHHHhcCCCEEEECCCHHHHHHHHHHHHHhcCC---Cc-EEEEcCCCchH
Confidence 0112356777788999999999999999999999998875 44 45555455432
Q ss_pred cccccccCCHHHHHHhHhCCCCCcEEEEeCcchhH-------------hhhccCceEEEEe--CChhHHHHHHHHhcCCC
Q 012547 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIAS-------------EIYNKEYANARIC--GAEKWRKPLAKFLRRPH 268 (461)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~-------------ev~~g~~~~~~~~--~~~~~~~~l~~ll~~~g 268 (461)
+.+.+++.++.. .+...|+++. +...+....++.. .+++..+.+.++|+..|
T Consensus 103 ---------~~~~l~~~~~~~----~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G 169 (735)
T PRK14806 103 ---------VVDAARAVFGEL----PAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAALARVDRLWRAVG 169 (735)
T ss_pred ---------HHHHHHHhcccc----CCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHHHHHHHHHHHHcC
Confidence 123455555321 1223344442 1222333322322 34567788999999999
Q ss_pred ceEEec
Q 012547 269 FTVWDN 274 (461)
Q Consensus 269 ~~v~~s 274 (461)
-+++..
T Consensus 170 ~~~~~~ 175 (735)
T PRK14806 170 ADVLHM 175 (735)
T ss_pred CEEEEc
Confidence 766543
No 91
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.71 E-value=7.2e-08 Score=93.78 Aligned_cols=163 Identities=15% Similarity=0.107 Sum_probs=116.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|+|++||+|.|..+++..+... |...+ +++..+..+..... ..+..
T Consensus 1 ~~~gfigag~ma~ala~g~~~~-Gi~~~-~~i~~s~~~~~~~~-------------------------~~~~~------- 46 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVAS-GIIEA-NRIWASVQTERSLG-------------------------LMFEA------- 46 (267)
T ss_pred CceeEechhhhHHHHHhccccc-CCCch-hheeeecCchhhhh-------------------------hhhhc-------
Confidence 6899999999999999999888 85544 45555544221100 00110
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
..++.+.+..+.++.+|++|++|+++.++.++.++.+.+.. +++++|+..|+...
T Consensus 47 ----------------------~g~~~~~~n~~~~~~s~v~~~svKp~~i~~vls~~~~~~~~---~~iivS~aaG~tl~ 101 (267)
T KOG3124|consen 47 ----------------------LGVKTVFTNLEVLQASDVVFLSVKPQVIESVLSEIKPKVSK---GKIIVSVAAGKTLS 101 (267)
T ss_pred ----------------------CCceeeechHHHHhhccceeEeecchhHHHHhhcCcccccc---ceEEEEEeecccHH
Confidence 02333333377788999999999999999999999886554 57999999998775
Q ss_pred cccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEE-eCChhHHHHHHHHhcCCCceEEecCChHH
Q 012547 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (461)
Q Consensus 204 ~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~-~~~~~~~~~l~~ll~~~g~~v~~s~Di~g 279 (461)
.+++.++. ..+ +++.+||++.-+..|...+..- ....++.+.++++|+..|+...+.++.+.
T Consensus 102 ------------~l~~~l~~-~~r-viRvmpNtp~~v~eg~sv~~~g~~~~~~D~~l~~~ll~~vG~~~evpE~~iD 164 (267)
T KOG3124|consen 102 ------------SLESKLSP-PTR-VIRVMPNTPSVVGEGASVYAIGCHATNEDLELVEELLSAVGLCEEVPEKCID 164 (267)
T ss_pred ------------HHHHhcCC-CCc-eEEecCCChhhhhcCcEEEeeCCCcchhhHHHHHHHHHhcCcceeCcHHhhh
Confidence 25666662 233 5789999999999886533222 12456779999999999999988887653
No 92
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=98.70 E-value=2.2e-07 Score=92.91 Aligned_cols=162 Identities=17% Similarity=0.303 Sum_probs=101.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
.|+|+|+|.|.||..+|..|.+. | +.|.+|+++...... ... ..+
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~-g-----~~v~i~g~d~~~~~~---------~~a------------~~l-------- 47 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEA-G-----LVVRIIGRDRSAATL---------KAA------------LEL-------- 47 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHc-C-----CeEEEEeecCcHHHH---------HHH------------hhc--------
Confidence 57999999999999999999999 8 889899888653221 000 001
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCH-HHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNL-QEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl-~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
+++| ..+.+. .+++.+||+||+|||-..+.++++++.|++++ +++|..++. +-
T Consensus 48 ----------------gv~d------~~~~~~~~~~~~~aD~VivavPi~~~~~~l~~l~~~l~~---g~iv~Dv~S-~K 101 (279)
T COG0287 48 ----------------GVID------ELTVAGLAEAAAEADLVIVAVPIEATEEVLKELAPHLKK---GAIVTDVGS-VK 101 (279)
T ss_pred ----------------Cccc------ccccchhhhhcccCCEEEEeccHHHHHHHHHHhcccCCC---CCEEEeccc-cc
Confidence 1111 122332 56678899999999999999999999998887 676665441 11
Q ss_pred cccccccccCCHHHHHHhHhCCCCCcEE---EEeCcchhHhhhccCceEEEEeC--ChhHHHHHHHHhcCCCceEEecC
Q 012547 202 AELEAVPRIITPTQMINRATGVPIENIL---YLGGPNIASEIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWDNG 275 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~v~---vlsGPn~a~ev~~g~~~~~~~~~--~~~~~~~l~~ll~~~g~~v~~s~ 275 (461)
..+-+.+.+..+... +++ -+.||.--.....+.....+... +.++.+.+.+++...|-+++..+
T Consensus 102 ---------~~v~~a~~~~~~~~~-~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~~~~~~~~ga~~v~~~ 170 (279)
T COG0287 102 ---------SSVVEAMEKYLPGDV-RFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEWVEEVKRLWEALGARLVEMD 170 (279)
T ss_pred ---------HHHHHHHHHhccCCC-eeEecCCCCCCcccccccCCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 123344555543211 111 24566411122344333333332 35688999999998887776544
No 93
>PLN02712 arogenate dehydrogenase
Probab=98.66 E-value=2.7e-07 Score=102.61 Aligned_cols=160 Identities=14% Similarity=0.183 Sum_probs=102.3
Q ss_pred CCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhh
Q 012547 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (461)
Q Consensus 39 ~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~ 118 (461)
.+.+.|||+|||+|.||.++|..|.+. | ++|.+|+|+... +. ...
T Consensus 365 ~~~~~~kIgIIGlG~mG~slA~~L~~~-G-----~~V~~~dr~~~~-~~--------------------------a~~-- 409 (667)
T PLN02712 365 NDGSKLKIAIVGFGNFGQFLAKTMVKQ-G-----HTVLAYSRSDYS-DE--------------------------AQK-- 409 (667)
T ss_pred CCCCCCEEEEEecCHHHHHHHHHHHHC-c-----CEEEEEECChHH-HH--------------------------HHH--
Confidence 334568999999999999999999988 7 899999998532 11 000
Q ss_pred hhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc-CCCEEEEcCCchhHHHHHHHHHH-HhhccCCCCEEEEE
Q 012547 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW-DADIVINGLPSTETKEVFEEISR-YWKERITVPVIISL 196 (461)
Q Consensus 119 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~-~aDiIIiaVps~~~~~vl~~i~~-~l~~~~~~~iIIs~ 196 (461)
+ ++...+++++++. .+|+||+|||...+.++++++.+ .+++ +++++++
T Consensus 410 -------~--------------------Gv~~~~~~~el~~~~aDvVILavP~~~~~~vi~~l~~~~lk~---g~ivvDv 459 (667)
T PLN02712 410 -------L--------------------GVSYFSDADDLCEEHPEVILLCTSILSTEKVLKSLPFQRLKR---STLFVDV 459 (667)
T ss_pred -------c--------------------CCeEeCCHHHHHhcCCCEEEECCChHHHHHHHHHHHHhcCCC---CcEEEEC
Confidence 0 2234567777665 58999999999999999999876 4665 6888888
Q ss_pred eecCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhc-c---CceE---EEEeCC---hhHHHHHHHHhcC
Q 012547 197 AKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYN-K---EYAN---ARICGA---EKWRKPLAKFLRR 266 (461)
Q Consensus 197 tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~-g---~~~~---~~~~~~---~~~~~~l~~ll~~ 266 (461)
+.+=. .+.+.+.+.++.. .+ .+...|.+..+.+. | .+.. ..+.++ .+.++.+.++|..
T Consensus 460 ~SvK~----------~~~~~~~~~l~~~-~~-~v~~HPm~G~e~~~~G~~~~~~lf~~~~v~~~~~~~~~~~~l~~l~~~ 527 (667)
T PLN02712 460 LSVKE----------FPRNLFLQHLPQD-FD-ILCTHPMFGPESGKNGWNNLAFVFDKVRIGSDDRRVSRCDSFLDIFAR 527 (667)
T ss_pred CCccH----------HHHHHHHHhccCC-Cc-eEeeCCCCCccccccchhhhhhhccCcEeCCCcchHHHHHHHHHHHHH
Confidence 53311 1224456655421 12 33456666655431 2 1100 112222 2345666788888
Q ss_pred CCceEEecC
Q 012547 267 PHFTVWDNG 275 (461)
Q Consensus 267 ~g~~v~~s~ 275 (461)
.|-+++..+
T Consensus 528 lGa~vv~ms 536 (667)
T PLN02712 528 EGCRMVEMS 536 (667)
T ss_pred cCCEEEEeC
Confidence 887766543
No 94
>PLN02712 arogenate dehydrogenase
Probab=98.63 E-value=5.4e-07 Score=100.23 Aligned_cols=159 Identities=13% Similarity=0.166 Sum_probs=98.9
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 40 ~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
+.++|||+|||+|.||.++|..|.+. | ++|.+|+|+... +. ...
T Consensus 49 ~~~~~kIgIIG~G~mG~slA~~L~~~-G-----~~V~~~dr~~~~-~~--------------------------A~~--- 92 (667)
T PLN02712 49 NTTQLKIAIIGFGNYGQFLAKTLISQ-G-----HTVLAHSRSDHS-LA--------------------------ARS--- 92 (667)
T ss_pred cCCCCEEEEEccCHHHHHHHHHHHHC-C-----CEEEEEeCCHHH-HH--------------------------HHH---
Confidence 34568999999999999999999988 8 899999998432 10 000
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHh-cCCCEEEEcCCchhHHHHHHHHH-HHhhccCCCCEEEEEe
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVINGLPSTETKEVFEEIS-RYWKERITVPVIISLA 197 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av-~~aDiIIiaVps~~~~~vl~~i~-~~l~~~~~~~iIIs~t 197 (461)
+ ++...+|+++++ .++|+||+|||...+.++++++. +++++ +++|+.++
T Consensus 93 ------~--------------------Gv~~~~d~~e~~~~~aDvViLavP~~~~~~vl~~l~~~~l~~---g~iVvDv~ 143 (667)
T PLN02712 93 ------L--------------------GVSFFLDPHDLCERHPDVILLCTSIISTENVLKSLPLQRLKR---NTLFVDVL 143 (667)
T ss_pred ------c--------------------CCEEeCCHHHHhhcCCCEEEEcCCHHHHHHHHHhhhhhcCCC---CeEEEECC
Confidence 0 233456677644 56999999999999999999986 56776 67787774
Q ss_pred ecCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHh----hhccCceEEE--EeCCh----hHHHHHHHHhcCC
Q 012547 198 KGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE----IYNKEYANAR--ICGAE----KWRKPLAKFLRRP 267 (461)
Q Consensus 198 kGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~e----v~~g~~~~~~--~~~~~----~~~~~l~~ll~~~ 267 (461)
++. ..+.+.+.+.++.. .. .+-.-|-+..| ...+...... ..+++ +.++.+.++|...
T Consensus 144 -SvK---------~~~~~~l~~~l~~~-~~-~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l 211 (667)
T PLN02712 144 -SVK---------EFAKNLLLDYLPED-FD-IICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKSFLEVFERE 211 (667)
T ss_pred -CCc---------HHHHHHHHHhcCCC-Ce-EEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHHHHHHHHHHc
Confidence 211 12334555555421 12 22233444333 2233331111 11222 2456677888888
Q ss_pred CceEEecC
Q 012547 268 HFTVWDNG 275 (461)
Q Consensus 268 g~~v~~s~ 275 (461)
|-++...+
T Consensus 212 Ga~v~~ms 219 (667)
T PLN02712 212 GCKMVEMS 219 (667)
T ss_pred CCEEEEeC
Confidence 87776543
No 95
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=98.60 E-value=1e-06 Score=88.85 Aligned_cols=168 Identities=13% Similarity=0.088 Sum_probs=100.5
Q ss_pred ceEEEECccH--------------------HHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhh
Q 012547 44 LRIVGVGAGA--------------------WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDV 103 (461)
Q Consensus 44 mkI~IIGaGa--------------------mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~ 103 (461)
|||+|.|+|+ -|.+||..|+++ | |+|++|+|+++.++.-..+
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkA-G-----heV~V~Drnrsa~e~e~~e------------ 62 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMA-G-----HDVVLAEPNREFMSDDLWK------------ 62 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHC-C-----CEEEEEeCChhhhhhhhhH------------
Confidence 7899999997 388999999999 8 9999999987644210000
Q ss_pred HHhhhhcccccchhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-hHHHHHHHHHH
Q 012547 104 LRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEEISR 182 (461)
Q Consensus 104 ~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-~~~~vl~~i~~ 182 (461)
.+.. .+...++++.++++++|+||+|+|.. +++++++.+.+
T Consensus 63 ---------~Lae-----------------------------aGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa 104 (341)
T TIGR01724 63 ---------KVED-----------------------------AGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIE 104 (341)
T ss_pred ---------HHHH-----------------------------CCCeecCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHh
Confidence 0100 13456678889999999999999965 58899888888
Q ss_pred HhhccCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCcEEEEeC-----cchhHh---hhccCceEEEEeCCh
Q 012547 183 YWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGG-----PNIASE---IYNKEYANARICGAE 254 (461)
Q Consensus 183 ~l~~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsG-----Pn~a~e---v~~g~~~~~~~~~~~ 254 (461)
.+.+ ++++|.++ .+++.. +...+++.+-.....+.+.+. |++..+ +..|......--.++
T Consensus 105 ~L~~---GaIVID~S-TIsP~t--------~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~~~~~~~~~~~~~~~A~e 172 (341)
T TIGR01724 105 HVPE---NAVICNTC-TVSPVV--------LYYSLEKILRLKRTDVGISSMHPAAVPGTPQHGHYVIGGKPTAGKEMATE 172 (341)
T ss_pred cCCC---CCEEEECC-CCCHHH--------HHHHHHHHhhcCccccCeeccCCCCCCCCCCCceeeeccccccccccCCH
Confidence 8776 67777554 455441 222333322100112222221 222111 111111100001246
Q ss_pred hHHHHHHHHhcCCCceEEe-cCChHH
Q 012547 255 KWRKPLAKFLRRPHFTVWD-NGDLVT 279 (461)
Q Consensus 255 ~~~~~l~~ll~~~g~~v~~-s~Di~g 279 (461)
+..+++.++-.+.+-..|. ..|+++
T Consensus 173 e~i~~~~el~~~~~~~~~~~pa~l~~ 198 (341)
T TIGR01724 173 EQISKCVELAKSTGKKAYVVPADVTS 198 (341)
T ss_pred HHHHHHHHHHHHhCCCeeecchhhcc
Confidence 7788888888887766664 456665
No 96
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.53 E-value=1.3e-06 Score=93.16 Aligned_cols=191 Identities=15% Similarity=0.082 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccCCccchhhhhh
Q 012547 54 WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILK 133 (461)
Q Consensus 54 mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~ 133 (461)
||..||..|+++ | ++|.+|+|++++++.+.+ ..+ .+
T Consensus 1 MG~~mA~nL~~~-G-----~~V~v~nrt~~~~~~l~~--------~~g-------------~~----------------- 36 (459)
T PRK09287 1 MGKNLALNIASH-G-----YTVAVYNRTPEKTDEFLA--------EEG-------------KG----------------- 36 (459)
T ss_pred CcHHHHHHHHhC-C-----CeEEEECCCHHHHHHHHH--------hhC-------------CC-----------------
Confidence 899999999999 8 999999999887664211 000 00
Q ss_pred hcccccCCCCCCCCeEEecCHHHHhcC---CCEEEEcCCc-hhHHHHHHHHHHHhhccCCCCEEEEEeecCccccccccc
Q 012547 134 DGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPR 209 (461)
Q Consensus 134 ~~~~~~~~~~~~~~i~~t~dl~~av~~---aDiIIiaVps-~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~~~~~~~ 209 (461)
.++....+++++++. +|+||++||. ..++++++.+.+++.+ +.++|.+.+....++
T Consensus 37 ------------~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~~l~~---GdiiID~gn~~~~~t----- 96 (459)
T PRK09287 37 ------------KKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLPLLEK---GDIIIDGGNSNYKDT----- 96 (459)
T ss_pred ------------CCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHhcCCC---CCEEEECCCCCHHHH-----
Confidence 034566788887764 8999999996 4899999999999887 678888776544432
Q ss_pred cCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceE-------EecCChHHH-H
Q 012547 210 IITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTV-------WDNGDLVTH-E 281 (461)
Q Consensus 210 ~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v-------~~s~Di~gv-e 281 (461)
....+.+++ .|.......+..||.-|+ .| + .++++++++..+.++.+|..-+-++ .+..+. |. -
T Consensus 97 -~~~~~~l~~-~Gi~fvdapVSGG~~gA~---~G-~-siM~GG~~~a~~~~~piL~~ia~~~~~g~~c~~~vG~~-GaGh 168 (459)
T PRK09287 97 -IRREKELAE-KGIHFIGMGVSGGEEGAL---HG-P-SIMPGGQKEAYELVAPILEKIAAKVEDGEPCVTYIGPD-GAGH 168 (459)
T ss_pred -HHHHHHHHh-cCCeEEecCCCCCHHHHh---cC-C-EEEEeCCHHHHHHHHHHHHHHhhhhcCCCCceeeeCCC-CHHH
Confidence 111122222 122111122334444433 34 3 4568888888888888887644332 222222 22 1
Q ss_pred HHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHHHHHH-HhCCCchhhc
Q 012547 282 VMGGLKNVYAIGAALTNESATSKSVYFAHCTSEMVFITH-LLAEEPEKLA 330 (461)
Q Consensus 282 ~~galKNv~Ai~~Gi~~g~~n~~a~l~~~~~~Em~~l~~-a~G~~~~t~~ 330 (461)
..+.+-|. --..+.+++.|...+++ .+|.+++.+.
T Consensus 169 ~vKmvhN~--------------ie~~~mq~iaEa~~l~~~~~Gl~~~~l~ 204 (459)
T PRK09287 169 YVKMVHNG--------------IEYGDMQLIAEAYDLLKDGLGLSAEEIA 204 (459)
T ss_pred HHHHHHHH--------------HHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 22222222 22344568899999998 5899877653
No 97
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.50 E-value=6.1e-06 Score=83.77 Aligned_cols=199 Identities=22% Similarity=0.284 Sum_probs=115.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
++|+|||.|+||.++|..|... | .+|.+|+|.....+. ...
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~-G-----~~ViV~~r~~~s~~~--------------------------A~~------- 57 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDS-G-----VEVVVGVRPGKSFEV--------------------------AKA------- 57 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHC-c-----CEEEEEECcchhhHH--------------------------HHH-------
Confidence 6899999999999999999988 8 899999876422110 000
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHH-HHHHHhhccCCCCEEEEEeecCcc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFE-EISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~-~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
.+... .+++++++.||+|++++|....+.++. ++.+.+++ ++ ++..+-|+..
T Consensus 58 ----------------------~G~~v-~sl~Eaak~ADVV~llLPd~~t~~V~~~eil~~MK~---Ga-iL~f~hgfni 110 (335)
T PRK13403 58 ----------------------DGFEV-MSVSEAVRTAQVVQMLLPDEQQAHVYKAEVEENLRE---GQ-MLLFSHGFNI 110 (335)
T ss_pred ----------------------cCCEE-CCHHHHHhcCCEEEEeCCChHHHHHHHHHHHhcCCC---CC-EEEECCCcce
Confidence 02222 378899999999999999877778874 58888886 55 5557778876
Q ss_pred ccccccccCCHHHHHHhHhCCCCCcEEE--EeCcchhH--h--hhccCceEEEEeCC-----hhHHHHHHHHhcC-----
Q 012547 203 ELEAVPRIITPTQMINRATGVPIENILY--LGGPNIAS--E--IYNKEYANARICGA-----EKWRKPLAKFLRR----- 266 (461)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~~v~v--lsGPn~a~--e--v~~g~~~~~~~~~~-----~~~~~~l~~ll~~----- 266 (461)
.. ....+.....+.. =-||++.. + -+.|.|+++.+-.| .+.+.........
T Consensus 111 ~~-------------~~i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l~av~qd~sg~a~~~ala~a~~iG~~ragv 177 (335)
T PRK13403 111 HF-------------GQINPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPALVAVHQDATGTALHVALAYAKGVGCTRAGV 177 (335)
T ss_pred ec-------------CceeCCCCCeEEEECCCCCChHHHHHHHcCCCceeEEEEEECCCCcHHHHHHHHHHHcCCCceeE
Confidence 41 1222211223221 14566542 1 23456766544221 1233334444332
Q ss_pred --CCceEEecCChHH--HHHHHHHHHHHHHHHh-hccCccchHHHHHHHHHHHHHHHHHHh
Q 012547 267 --PHFTVWDNGDLVT--HEVMGGLKNVYAIGAA-LTNESATSKSVYFAHCTSEMVFITHLL 322 (461)
Q Consensus 267 --~g~~v~~s~Di~g--ve~~galKNv~Ai~~G-i~~g~~n~~a~l~~~~~~Em~~l~~a~ 322 (461)
..|+-.+.+|+.| .-+||.+-..+-.+.- +...|-....+++ .++.|+..++..+
T Consensus 178 ~~ttf~~EtetDlfgEq~vL~Gg~~~li~~gfe~lveaGy~pe~Ayf-e~~he~kli~dli 237 (335)
T PRK13403 178 IETTFQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGYRPEIAYF-ECLHELKLIVDLM 237 (335)
T ss_pred EecchHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHH
Confidence 2244556778888 3457755544322221 2222222222333 4677877776544
No 98
>PRK08818 prephenate dehydrogenase; Provisional
Probab=98.49 E-value=1.7e-06 Score=89.89 Aligned_cols=144 Identities=11% Similarity=0.119 Sum_probs=91.1
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.++|+|||. |.||..+|..|.+..| ++|+.|++..+
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~-----~~V~g~D~~d~-------------------------------------- 40 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQ-----LEVIGHDPADP-------------------------------------- 40 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCC-----CEEEEEcCCcc--------------------------------------
Confidence 479999999 9999999999986424 78888876421
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHH---hhccCCCCEEEEEee
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY---WKERITVPVIISLAK 198 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~---l~~~~~~~iIIs~tk 198 (461)
...++++++++||+||+|||...+.++++++.++ +++ +++|..+.
T Consensus 41 ----------------------------~~~~~~~~v~~aDlVilavPv~~~~~~l~~l~~~~~~l~~---~~iVtDVg- 88 (370)
T PRK08818 41 ----------------------------GSLDPATLLQRADVLIFSAPIRHTAALIEEYVALAGGRAA---GQLWLDVT- 88 (370)
T ss_pred ----------------------------ccCCHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhhcCCCC---CeEEEECC-
Confidence 0123456688999999999999999999999987 566 56655443
Q ss_pred cCccccccccccCCHHHHHHhHhCCCCCcEE---EEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEecC
Q 012547 199 GVEAELEAVPRIITPTQMINRATGVPIENIL---YLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNG 275 (461)
Q Consensus 199 Gi~~~~~~~~~~~~~se~i~~~lg~~~~~v~---vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~s~ 275 (461)
++-. .+.+.+.+. + .+++ -+.||... ...++.+..++.....+..+.++++++..|-++...+
T Consensus 89 SvK~---------~i~~~~~~~-~---~~fVG~HPMaG~E~s-~lf~g~~~iltp~~~~~~~~~v~~l~~~~Ga~v~~~~ 154 (370)
T PRK08818 89 SIKQ---------APVAAMLAS-Q---AEVVGLHPMTAPPKS-PTLKGRVMVVCEARLQHWSPWVQSLCSALQAECVYAT 154 (370)
T ss_pred CCcH---------HHHHHHHhc-C---CCEEeeCCCCCCCCC-cccCCCeEEEeCCCchhHHHHHHHHHHHcCCEEEEcC
Confidence 2111 111222221 1 1111 24555432 2334554333333334456778899998887766544
No 99
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.43 E-value=2.5e-06 Score=86.14 Aligned_cols=106 Identities=17% Similarity=0.249 Sum_probs=70.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+|||+|||+|.||+.+|..++.. | . +|.+++++++.++... .++ ... .....
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~-~-----~~ev~L~D~~~~~~~~~~----~dl-~~~-----------~~~~~----- 54 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALK-E-----LGDVVLFDIVEGVPQGKA----LDI-AEA-----------APVEG----- 54 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEEECCCchhHHHH----HHH-Hhh-----------hhhcC-----
Confidence 47999999999999999999987 6 4 8999999887543210 000 000 00000
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcC--Cc--------------hhHHHHHHHHHHHhh
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PS--------------TETKEVFEEISRYWK 185 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaV--ps--------------~~~~~vl~~i~~~l~ 185 (461)
. ...+..++|.+ ++++||+||+++ |. ..++++++++.++..
T Consensus 55 ----~------------------~~~i~~~~d~~-~~~~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~ 111 (307)
T PRK06223 55 ----F------------------DTKITGTNDYE-DIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAP 111 (307)
T ss_pred ----C------------------CcEEEeCCCHH-HHCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 0 01456667775 589999999986 33 347777777777764
Q ss_pred ccCCCCEEEEEeecCcc
Q 012547 186 ERITVPVIISLAKGVEA 202 (461)
Q Consensus 186 ~~~~~~iIIs~tkGi~~ 202 (461)
+.++|..+|..+.
T Consensus 112 ----~~~viv~tNP~d~ 124 (307)
T PRK06223 112 ----DAIVIVVTNPVDA 124 (307)
T ss_pred ----CeEEEEecCcHHH
Confidence 4567777776543
No 100
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=98.42 E-value=9.5e-07 Score=90.49 Aligned_cols=94 Identities=17% Similarity=0.233 Sum_probs=71.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.-|+|+|||+|.||.++|..|+.. | ++|..|+++++... .
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~-G-----~~V~~~d~~~~~~~----------------------------~------ 184 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGF-G-----ATITAYDAYPNKDL----------------------------D------ 184 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEeCChhHhh----------------------------h------
Confidence 347999999999999999999987 8 89999998863210 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh-HHH-HHHHHHHHhhccCCCCEEEEEeec
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKE-VFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~-~~~-vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
.+..+.++++++++||+|++++|... +.. +.+++.+.+++ ++++|.++.|
T Consensus 185 -------------------------~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~---gavlIN~aRG 236 (330)
T PRK12480 185 -------------------------FLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKK---GAILVNAARG 236 (330)
T ss_pred -------------------------hhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCC---CcEEEEcCCc
Confidence 01233568888999999999999753 333 44566667776 7899999999
Q ss_pred Cccc
Q 012547 200 VEAE 203 (461)
Q Consensus 200 i~~~ 203 (461)
-..+
T Consensus 237 ~~vd 240 (330)
T PRK12480 237 AVIN 240 (330)
T ss_pred cccC
Confidence 7665
No 101
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=98.38 E-value=3.3e-06 Score=85.57 Aligned_cols=121 Identities=17% Similarity=0.172 Sum_probs=78.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
|||+|||+|.||+.+|..++.. | + +|.++++.++..+. + ..++ +.+...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~-g-----~~~VvlvDi~~~l~~g---~-a~d~----------------~~~~~~---- 51 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK-E-----LADLVLLDVVEGIPQG---K-ALDM----------------YEASPV---- 51 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc-C-----CCeEEEEeCCCChhHH---H-HHhh----------------hhhhhc----
Confidence 7999999999999999999988 7 4 79999997653221 0 0001 111100
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc----------------hhHHHHHHHHHHHhhc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISRYWKE 186 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps----------------~~~~~vl~~i~~~l~~ 186 (461)
. . ....+++++|.++ +++||+||++++. ..++++++++.++..
T Consensus 52 ~-~------------------~~~~i~~t~d~~~-~~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p- 110 (305)
T TIGR01763 52 G-G------------------FDTKVTGTNNYAD-TANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSP- 110 (305)
T ss_pred c-C------------------CCcEEEecCCHHH-hCCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-
Confidence 0 0 0024677888876 7999999999972 246666777777643
Q ss_pred cCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCcE
Q 012547 187 RITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENI 228 (461)
Q Consensus 187 ~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v 228 (461)
+..+|.++|-.+.- ..++++..|.|..++
T Consensus 111 ---~~~iIv~tNP~di~----------t~~~~~~sg~~~~rv 139 (305)
T TIGR01763 111 ---NPIIVVVSNPLDAM----------TYVAWQKSGFPKERV 139 (305)
T ss_pred ---CeEEEEecCcHHHH----------HHHHHHHHCcCHHHE
Confidence 56788888866532 345566655443443
No 102
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=98.32 E-value=4.8e-06 Score=85.00 Aligned_cols=110 Identities=14% Similarity=0.147 Sum_probs=71.2
Q ss_pred CCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhh
Q 012547 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (461)
Q Consensus 39 ~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~ 118 (461)
.+.+.+||+|||+|.||+++|..++.. |+ .+|.|+|++++.++. +. ++..+. . .+..
T Consensus 2 ~~~~~~KI~IIGaG~vG~~ia~~la~~-gl----~~i~LvDi~~~~~~~---~~----ld~~~~-------~-~~~~--- 58 (321)
T PTZ00082 2 TMIKRRKISLIGSGNIGGVMAYLIVLK-NL----GDVVLFDIVKNIPQG---KA----LDISHS-------N-VIAG--- 58 (321)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHhC-CC----CeEEEEeCCCchhhH---HH----HHHHhh-------h-hccC---
Confidence 445568999999999999999999987 72 379999999876432 11 111110 0 0000
Q ss_pred hhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc---------------------hhHHHHH
Q 012547 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS---------------------TETKEVF 177 (461)
Q Consensus 119 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps---------------------~~~~~vl 177 (461)
....+..++|.+ ++++||+||++.-. ..+++++
T Consensus 59 -------------------------~~~~I~~~~d~~-~l~~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~ 112 (321)
T PTZ00082 59 -------------------------SNSKVIGTNNYE-DIAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVA 112 (321)
T ss_pred -------------------------CCeEEEECCCHH-HhCCCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHH
Confidence 001466668885 68999999997611 1266666
Q ss_pred HHHHHHhhccCCCCEEEEEeecCc
Q 012547 178 EEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 178 ~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
+++.++.. +..++..+|..+
T Consensus 113 ~~i~~~~p----~a~~iv~sNP~d 132 (321)
T PTZ00082 113 EGIKKYCP----NAFVIVITNPLD 132 (321)
T ss_pred HHHHHHCC----CeEEEEecCcHH
Confidence 77777654 356777776554
No 103
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.32 E-value=1.5e-05 Score=81.24 Aligned_cols=142 Identities=18% Similarity=0.158 Sum_probs=88.2
Q ss_pred CeEEecC--HHHHhcCCCEEEEcCCch--hHHHHHHHHHHHhhccCCCCEEEEEeecCccccccccccCCHHHHHHhHhC
Q 012547 147 PLKVVTN--LQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATG 222 (461)
Q Consensus 147 ~i~~t~d--l~~av~~aDiIIiaVps~--~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg 222 (461)
++++++| +.+++++||+||.|||.. ..+.++.++.+.+++ ++++.|.+.++... + +.+.+.
T Consensus 64 ~i~~~~~~~~~~a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~---~~ilaSntS~~~~~-----------~-la~~~~ 128 (314)
T PRK08269 64 RIAVVARDGAADALADADLVFEAVPEVLDAKREALRWLGRHVDA---DAIIASTTSTFLVT-----------D-LQRHVA 128 (314)
T ss_pred CeEeecCcchHHHhccCCEEEECCcCCHHHHHHHHHHHHhhCCC---CcEEEEccccCCHH-----------H-HHhhcC
Confidence 5777654 668889999999999974 567788899998887 78887766555543 2 555454
Q ss_pred CCCCcEEEEeCcchhHhhhccCceEEEE--eCChhHHHHHHHHhcCCCceEEecCChHHHHHHHHHHHHHHHHHhhccCc
Q 012547 223 VPIENILYLGGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAALTNES 300 (461)
Q Consensus 223 ~~~~~v~vlsGPn~a~ev~~g~~~~~~~--~~~~~~~~~l~~ll~~~g~~v~~s~Di~gve~~galKNv~Ai~~Gi~~g~ 300 (461)
.| .++. |-.|......-....++. ..+++..+.+..++...|..+....|.-|-.+
T Consensus 129 ~p-~r~~---g~Hf~~Pp~~~~lvEVv~g~~t~~e~~~~~~~ll~~lGk~~v~v~d~~Gfi~------------------ 186 (314)
T PRK08269 129 HP-ERFL---NAHWLNPAYLMPLVEVSPSDATDPAVVDRLAALLERIGKVPVVCGPSPGYIV------------------ 186 (314)
T ss_pred Cc-ccEE---EEecCCccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEecCCCCcch------------------
Confidence 33 2221 111111100101111221 23567888999999888887776677544211
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCCCchhh
Q 012547 301 ATSKSVYFAHCTSEMVFITHLLAEEPEKL 329 (461)
Q Consensus 301 ~n~~a~l~~~~~~Em~~l~~a~G~~~~t~ 329 (461)
..++...++|...+++..+.+++++
T Consensus 187 ----nri~~~~l~EAl~l~e~g~~~~e~i 211 (314)
T PRK08269 187 ----PRIQALAMNEAARMVEEGVASAEDI 211 (314)
T ss_pred ----HHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 1344567778888887777776654
No 104
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=98.26 E-value=9.4e-06 Score=73.13 Aligned_cols=121 Identities=22% Similarity=0.358 Sum_probs=77.1
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
|||+|||+ |.+|+++|..|... +.. .++.|++++++.++.... + ++. .... ++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~-~l~---~ei~L~D~~~~~~~g~a~----D-l~~--------------~~~~---~~ 54 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ-GLA---DEIVLIDINEDKAEGEAL----D-LSH--------------ASAP---LP 54 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT-TTS---SEEEEEESSHHHHHHHHH----H-HHH--------------HHHG---ST
T ss_pred CEEEEECCCChHHHHHHHHHHhC-CCC---CceEEeccCcccceeeeh----h-hhh--------------hhhh---cc
Confidence 79999999 99999999999988 642 579999999876553111 1 110 1000 00
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcC--Cc--------------hhHHHHHHHHHHHhhc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PS--------------TETKEVFEEISRYWKE 186 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaV--ps--------------~~~~~vl~~i~~~l~~ 186 (461)
.+..+..+..+++++||+||++. |. ..++++.+++.++..
T Consensus 55 -----------------------~~~~i~~~~~~~~~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p- 110 (141)
T PF00056_consen 55 -----------------------SPVRITSGDYEALKDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAP- 110 (141)
T ss_dssp -----------------------EEEEEEESSGGGGTTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHST-
T ss_pred -----------------------cccccccccccccccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCC-
Confidence 02344445566789999999987 22 135555566666543
Q ss_pred cCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCc
Q 012547 187 RITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIEN 227 (461)
Q Consensus 187 ~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~ 227 (461)
+.+++.++|-++. +..++++..+.+..+
T Consensus 111 ---~~~vivvtNPvd~----------~t~~~~~~s~~~~~k 138 (141)
T PF00056_consen 111 ---DAIVIVVTNPVDV----------MTYVAQKYSGFPPNK 138 (141)
T ss_dssp ---TSEEEE-SSSHHH----------HHHHHHHHHTSSGGG
T ss_pred ---ccEEEEeCCcHHH----------HHHHHHHhhCcCccc
Confidence 5678878876553 446777777655433
No 105
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.26 E-value=7.3e-06 Score=75.25 Aligned_cols=94 Identities=35% Similarity=0.468 Sum_probs=65.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch-hhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR-SVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~-~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.++|+|||.|+.|.+-|..|.++ | .+|++..|... ..+..+
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDS-G-----~~V~Vglr~~s~s~~~A~-------------------------------- 45 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDS-G-----VNVIVGLREGSASWEKAK-------------------------------- 45 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHC-C------EEEEEE-TTCHHHHHHH--------------------------------
T ss_pred CCEEEEECCChHHHHHHHHHHhC-C-----CCEEEEecCCCcCHHHHH--------------------------------
Confidence 36899999999999999999999 8 89999988865 221100
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHH-HHHHHHhhccCCCCEEEEEeecC
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVF-EEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl-~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
.+|| .+ .+.+|+++.||+|++.+|.....+++ ++|.|++++ ++. +..+-|+
T Consensus 46 -----------~~Gf------------~v-~~~~eAv~~aDvV~~L~PD~~q~~vy~~~I~p~l~~---G~~-L~fahGf 97 (165)
T PF07991_consen 46 -----------ADGF------------EV-MSVAEAVKKADVVMLLLPDEVQPEVYEEEIAPNLKP---GAT-LVFAHGF 97 (165)
T ss_dssp -----------HTT-------------EC-CEHHHHHHC-SEEEE-S-HHHHHHHHHHHHHHHS-T---T-E-EEESSSH
T ss_pred -----------HCCC------------ee-ccHHHHHhhCCEEEEeCChHHHHHHHHHHHHhhCCC---CCE-EEeCCcc
Confidence 1122 22 45778999999999999999999998 889999998 554 4466676
Q ss_pred cc
Q 012547 201 EA 202 (461)
Q Consensus 201 ~~ 202 (461)
..
T Consensus 98 ni 99 (165)
T PF07991_consen 98 NI 99 (165)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 106
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=98.23 E-value=4.9e-06 Score=88.06 Aligned_cols=80 Identities=20% Similarity=0.163 Sum_probs=56.1
Q ss_pred ceEEEECccHHHHHHHH--HHH----HhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchh
Q 012547 44 LRIVGVGAGAWGSVFTA--MLQ----DSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV 117 (461)
Q Consensus 44 mkI~IIGaGamG~alA~--~La----~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~ 117 (461)
+||+|||+|+||.+++. .++ .+ | ++|.+|+++++.++.+... ++ .+++..
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~-g-----~eV~L~Did~e~l~~~~~~-----~~-------------~~~~~~ 56 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELS-G-----STIALMDIDEERLETVEIL-----AK-------------KIVEEL 56 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCC-C-----CEEEEECCCHHHHHHHHHH-----HH-------------HHHHhc
Confidence 58999999999999776 343 33 4 7999999999877653221 11 111111
Q ss_pred hhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh
Q 012547 118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE 172 (461)
Q Consensus 118 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~ 172 (461)
. . ...+..++|+++++++||+||+++++..
T Consensus 57 ~-------~------------------~~~I~~ttD~~eal~~AD~Vi~ai~~~~ 86 (423)
T cd05297 57 G-------A------------------PLKIEATTDRREALDGADFVINTIQVGG 86 (423)
T ss_pred C-------C------------------CeEEEEeCCHHHHhcCCCEEEEeeEecC
Confidence 0 0 0157789999999999999999999643
No 107
>PTZ00117 malate dehydrogenase; Provisional
Probab=98.21 E-value=1.4e-05 Score=81.54 Aligned_cols=107 Identities=16% Similarity=0.256 Sum_probs=71.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+.+||+|||+|.+|..+|..++.. |. .++.|+|++++.++... ++-.+ ..+..
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~-~~----~~l~L~Di~~~~~~g~~-------lDl~~-----------~~~~~---- 56 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQK-NL----GDVVLYDVIKGVPQGKA-------LDLKH-----------FSTLV---- 56 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHC-CC----CeEEEEECCCccchhHH-------HHHhh-----------hcccc----
Confidence 457999999999999999999887 62 47999999987654211 11111 00000
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcC--Cc--------------hhHHHHHHHHHHHhh
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PS--------------TETKEVFEEISRYWK 185 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaV--ps--------------~~~~~vl~~i~~~l~ 185 (461)
+. ...+..++|++ ++++||+||++. |. ..++++++++.++.+
T Consensus 57 ~~---------------------~~~i~~~~d~~-~l~~ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p 114 (319)
T PTZ00117 57 GS---------------------NINILGTNNYE-DIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCP 114 (319)
T ss_pred CC---------------------CeEEEeCCCHH-HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 00 01355567887 689999999999 33 346677777777754
Q ss_pred ccCCCCEEEEEeecCc
Q 012547 186 ERITVPVIISLAKGVE 201 (461)
Q Consensus 186 ~~~~~~iIIs~tkGi~ 201 (461)
+..+|.++|..+
T Consensus 115 ----~a~vivvsNP~d 126 (319)
T PTZ00117 115 ----NAFVICVTNPLD 126 (319)
T ss_pred ----CeEEEEecChHH
Confidence 466777777654
No 108
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.21 E-value=3.7e-07 Score=87.34 Aligned_cols=127 Identities=20% Similarity=0.331 Sum_probs=84.3
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 41 ~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
....+|+|||+|.||+.||+..+.. | ++|.+++++++.+.+..+ .+.+-+. .+... +
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~s-g-----~~V~l~d~~~~aL~~A~~-~I~~sl~--------------rvakK--k 65 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATS-G-----LNVWLVDANEDALSRATK-AISSSLK--------------RVAKK--K 65 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhc-C-----CceEEecCCHHHHHHHHH-HHHHHHH--------------HHHhh--c
Confidence 3456899999999999999999999 8 999999999988775432 1111110 00000 0
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc--hhHHHHHHHHHHHhhccCCCCEEEEEee
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS--TETKEVFEEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps--~~~~~vl~~i~~~l~~~~~~~iIIs~tk 198 (461)
+.+.+..-+|++.. .+..++.++|...++.+||+||.++-. +..+.++++|...+++ ++++.+-+.
T Consensus 66 ~~~~~~~~~e~v~~---------~l~ri~~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~---~~il~tNTS 133 (298)
T KOG2304|consen 66 KADDPVALEEFVDD---------TLDRIKTSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKS---STILATNTS 133 (298)
T ss_pred ccCChhhHHHHHHH---------HHHHHHHcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhccc---ceEEeeccc
Confidence 00100000112121 123578889999999999999999864 5678899999888886 677777665
Q ss_pred cCcc
Q 012547 199 GVEA 202 (461)
Q Consensus 199 Gi~~ 202 (461)
.+..
T Consensus 134 Sl~l 137 (298)
T KOG2304|consen 134 SLSL 137 (298)
T ss_pred ceeH
Confidence 5543
No 109
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.20 E-value=5.7e-06 Score=84.83 Aligned_cols=96 Identities=20% Similarity=0.320 Sum_probs=68.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.-|+|+|||+|.||.++|..|++..| .+|..|+++.... ...
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~~g-----~~V~~~d~~~~~~----------------------------~~~----- 186 (332)
T PRK08605 145 KDLKVAVIGTGRIGLAVAKIFAKGYG-----SDVVAYDPFPNAK----------------------------AAT----- 186 (332)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCC-----CEEEEECCCccHh----------------------------HHh-----
Confidence 34799999999999999999954325 6787777664310 000
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHH--HHHHHHhhccCCCCEEEEEeec
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVF--EEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl--~~i~~~l~~~~~~~iIIs~tkG 199 (461)
.+...+++++++++||+|++++|.......+ ++..+.+++ ++++|.+++|
T Consensus 187 -------------------------~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~---gailIN~sRG 238 (332)
T PRK08605 187 -------------------------YVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKK---GAVFVNCARG 238 (332)
T ss_pred -------------------------hccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCC---CcEEEECCCC
Confidence 1223457888999999999999976443333 344556676 7899999999
Q ss_pred Cccc
Q 012547 200 VEAE 203 (461)
Q Consensus 200 i~~~ 203 (461)
...+
T Consensus 239 ~~vd 242 (332)
T PRK08605 239 SLVD 242 (332)
T ss_pred cccC
Confidence 7765
No 110
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=98.19 E-value=1.9e-06 Score=89.96 Aligned_cols=117 Identities=18% Similarity=0.254 Sum_probs=77.3
Q ss_pred ceEEEECccHHHHHH-HHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 44 LRIVGVGAGAWGSVF-TAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 44 mkI~IIGaGamG~al-A~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
|||+++|+|+||.++ +..|+++ | ++|++++++++.+++++++++..+. ..+.
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~-g-----~~V~~vd~~~~~v~aL~~qglY~v~----------------~~~~----- 53 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADN-G-----FEVTFVDVNQELIDALNKRKSYQVI----------------VVGE----- 53 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhC-C-----CeEEEEECCHHHHHHHhcCCCeEEE----------------EecC-----
Confidence 799999999999855 8888888 7 8999999988888876554321000 1100
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEe--cCHHH---HhcCCCEEEEcCCchhHHHHHHHHHHHhhccC-----CCCE
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVV--TNLQE---AVWDADIVINGLPSTETKEVFEEISRYWKERI-----TVPV 192 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t--~dl~~---av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~-----~~~i 192 (461)
+... ..+ ..+... .+.++ ++.++|+|+++|++.+.+.++..|.+.+.+.- +.-.
T Consensus 54 ~~~~------------~~i----~~v~~~~~~~~~~~~~~~~~~dlvt~~v~~~~~~s~~~~l~~~L~~R~~~~~~~~~~ 117 (381)
T PRK02318 54 NEQV------------ETV----SNVSAINSADEEAVIEAIAEADLVTTAVGPNILPFIAPLIAKGLKKRKAQGNTKPLN 117 (381)
T ss_pred CCcE------------EEE----eeEeeeCCCCHHHHHHHhcCCCEEEeCCCcccchhHHHHHHHHHHHHHHcCCCCCCE
Confidence 0000 000 022222 12122 45588999999999999999999988776420 0126
Q ss_pred EEEEeecCccc
Q 012547 193 IISLAKGVEAE 203 (461)
Q Consensus 193 IIs~tkGi~~~ 203 (461)
|+||.||+.+.
T Consensus 118 VlsceN~~~ng 128 (381)
T PRK02318 118 IIACENMIRGT 128 (381)
T ss_pred EEecCChhhHH
Confidence 89999999875
No 111
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=97.98 E-value=9.1e-05 Score=73.30 Aligned_cols=123 Identities=23% Similarity=0.291 Sum_probs=79.6
Q ss_pred EEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccCC
Q 012547 46 IVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (461)
Q Consensus 46 I~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~ 124 (461)
|+|||+ |.||..+|..|+.. |.+. ..+|.++|+++++++....+ ++..- ....
T Consensus 1 I~IIGagG~vG~~ia~~l~~~-~~~~-~~el~L~D~~~~~l~~~~~d-----l~~~~----------~~~~--------- 54 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG-SVLL-AIELVLYDIDEEKLKGVAMD-----LQDAV----------EPLA--------- 54 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC-CCCc-ceEEEEEeCCcccchHHHHH-----HHHhh----------hhcc---------
Confidence 689999 99999999999987 5211 15899999998766542211 11100 0000
Q ss_pred ccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc----------------hhHHHHHHHHHHHhhccC
Q 012547 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISRYWKERI 188 (461)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps----------------~~~~~vl~~i~~~l~~~~ 188 (461)
...+.+++|+.+++++||+||++.-. ..++++++++.++.+
T Consensus 55 --------------------~~~i~~~~d~~~~~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p--- 111 (263)
T cd00650 55 --------------------DIKVSITDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSP--- 111 (263)
T ss_pred --------------------CcEEEECCchHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC---
Confidence 01567788888889999999996622 246777777777664
Q ss_pred CCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCcE
Q 012547 189 TVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENI 228 (461)
Q Consensus 189 ~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v 228 (461)
+..++..+|-.+. +..++++..|.|..++
T Consensus 112 -~a~~i~~tNP~d~----------~t~~~~~~sg~~~~kv 140 (263)
T cd00650 112 -DAWIIVVSNPVDI----------ITYLVWRYSGLPKEKV 140 (263)
T ss_pred -CeEEEEecCcHHH----------HHHHHHHHhCCCchhE
Confidence 4677777765543 3355667655444443
No 112
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=97.97 E-value=5e-05 Score=76.63 Aligned_cols=119 Identities=18% Similarity=0.256 Sum_probs=73.9
Q ss_pred EEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccCC
Q 012547 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (461)
Q Consensus 46 I~IIGaGamG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~ 124 (461)
|+|||+|.||..+|..++.. | . +|.++|++++.++... + ++ .. ..... ..
T Consensus 1 I~IIGaG~vG~~ia~~la~~-~-----l~eV~L~Di~e~~~~g~~---~-dl-~~-------------~~~~~----~~- 51 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK-E-----LGDVVLLDIVEGLPQGKA---L-DI-SQ-------------AAPIL----GS- 51 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC-C-----CcEEEEEeCCCcHHHHHH---H-HH-HH-------------hhhhc----CC-
Confidence 68999999999999999987 6 4 8999999976443210 0 01 00 00000 00
Q ss_pred ccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc----------------hhHHHHHHHHHHHhhccC
Q 012547 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISRYWKERI 188 (461)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps----------------~~~~~vl~~i~~~l~~~~ 188 (461)
...+..++|.+ ++++||+||+++.. ..++++++++.++..
T Consensus 52 --------------------~~~I~~t~d~~-~l~dADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p--- 107 (300)
T cd01339 52 --------------------DTKVTGTNDYE-DIAGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAP--- 107 (300)
T ss_pred --------------------CeEEEEcCCHH-HhCCCCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC---
Confidence 01456667765 58999999997731 236677777777664
Q ss_pred CCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCcE
Q 012547 189 TVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENI 228 (461)
Q Consensus 189 ~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v 228 (461)
+..+|..+|-.+. +...+++..+.|..++
T Consensus 108 -~~~iIv~sNP~di----------~t~~~~~~s~~~~~rv 136 (300)
T cd01339 108 -NAIVIVVTNPLDV----------MTYVAYKASGFPRNRV 136 (300)
T ss_pred -CeEEEEecCcHHH----------HHHHHHHHhCCCHHHE
Confidence 3566777765543 2345566655443343
No 113
>PLN02602 lactate dehydrogenase
Probab=97.91 E-value=0.00017 Score=74.55 Aligned_cols=64 Identities=9% Similarity=0.093 Sum_probs=44.0
Q ss_pred cccccchhHHhhHHHHHhhcCCCC-----CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 18 IHHTNGSLEERLDELRRLMGKAEG-----DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
+|-.||-+. +..++=.+|-.... +.+||+|||+|.+|+++|..|+.. |.. .++.|+|.+++.++
T Consensus 8 ~~~~~~~~~-~~~~~~~~~~~~~~~m~~~~~~KI~IIGaG~VG~~~a~~l~~~-~l~---~el~LiDi~~~~~~ 76 (350)
T PLN02602 8 SSLGPGGLD-LSQAFFKPIHNSSPPSPTRRHTKVSVVGVGNVGMAIAQTILTQ-DLA---DELALVDVNPDKLR 76 (350)
T ss_pred cccccchhh-hhhhhhhcccccccccccCCCCEEEEECCCHHHHHHHHHHHhC-CCC---CEEEEEeCCCchhh
Confidence 344666655 54444443322222 226999999999999999999877 632 47999999887654
No 114
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.90 E-value=7e-05 Score=74.41 Aligned_cols=82 Identities=21% Similarity=0.254 Sum_probs=58.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+|||+|||+|.||..++..+.+. + . ..+ +.+|+++.++++.+.+ . +
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~-~-~--~~elv~v~d~~~~~a~~~a~---------~------------~-------- 47 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSG-R-I--NAELYAFYDRNLEKAENLAS---------K------------T-------- 47 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcC-C-C--CeEEEEEECCCHHHHHHHHH---------h------------c--------
Confidence 47999999999999999998865 2 0 133 6678888765442100 0 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHH
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR 182 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~ 182 (461)
.....+|+++.+.++|+|++|+|+..+.+++.++..
T Consensus 48 -------------------------~~~~~~~~~ell~~~DvVvi~a~~~~~~~~~~~al~ 83 (265)
T PRK13304 48 -------------------------GAKACLSIDELVEDVDLVVECASVNAVEEVVPKSLE 83 (265)
T ss_pred -------------------------CCeeECCHHHHhcCCCEEEEcCChHHHHHHHHHHHH
Confidence 123456788877889999999999999888877654
No 115
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=97.87 E-value=0.00012 Score=74.18 Aligned_cols=40 Identities=23% Similarity=0.278 Sum_probs=34.0
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
+||+|||+|.+|+++|..|+.. |.. ++|.+++++++.++.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~-g~~---~ei~l~D~~~~~~~~ 40 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQ-GIA---DELVLIDINEEKAEG 40 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeCCcchhhH
Confidence 4899999999999999999988 631 489999999877654
No 116
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.86 E-value=0.00014 Score=73.91 Aligned_cols=39 Identities=23% Similarity=0.192 Sum_probs=33.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
|||+|||+|.+|+++|..|+.. |.. ++|.+++++++.++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~-g~~---~ev~l~D~~~~~~~ 39 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLR-GLA---SEIVLVDINKAKAE 39 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCC---CEEEEEECCchhhh
Confidence 7999999999999999999988 621 58999999987554
No 117
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.82 E-value=0.00011 Score=64.62 Aligned_cols=122 Identities=19% Similarity=0.178 Sum_probs=73.5
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeE-EEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
|||+|+|+ |.||..++..+.+..+ +++ -.++|+.+.... + ....+.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~-----~~lv~~v~~~~~~~~g---~---------------------d~g~~~--- 48 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPG-----FELVGAVDRKPSAKVG---K---------------------DVGELA--- 48 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTT-----EEEEEEEETTTSTTTT---S---------------------BCHHHC---
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCC-----cEEEEEEecCCccccc---c---------------------hhhhhh---
Confidence 79999999 9999999999988424 664 456666521110 0 011100
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
+ ....++.+++|+++++..+|+||-++-+..+.+.++....+ +..+|+.+.|+.
T Consensus 49 -~-------------------~~~~~~~v~~~l~~~~~~~DVvIDfT~p~~~~~~~~~~~~~------g~~~ViGTTG~~ 102 (124)
T PF01113_consen 49 -G-------------------IGPLGVPVTDDLEELLEEADVVIDFTNPDAVYDNLEYALKH------GVPLVIGTTGFS 102 (124)
T ss_dssp -T-------------------SST-SSBEBS-HHHHTTH-SEEEEES-HHHHHHHHHHHHHH------T-EEEEE-SSSH
T ss_pred -C-------------------cCCcccccchhHHHhcccCCEEEEcCChHHhHHHHHHHHhC------CCCEEEECCCCC
Confidence 0 00125677899999999999999999777777766665543 467888888997
Q ss_pred cccccccccCCHHHHHHhHhCCCCCcEEEEeCcch
Q 012547 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNI 236 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~ 236 (461)
.+. -+.+++... .+.++..|||
T Consensus 103 ~~~---------~~~l~~~a~----~~~vl~a~Nf 124 (124)
T PF01113_consen 103 DEQ---------IDELEELAK----KIPVLIAPNF 124 (124)
T ss_dssp HHH---------HHHHHHHTT----TSEEEE-SSS
T ss_pred HHH---------HHHHHHHhc----cCCEEEeCCC
Confidence 652 033555322 2456777775
No 118
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=97.82 E-value=0.00069 Score=66.36 Aligned_cols=169 Identities=18% Similarity=0.138 Sum_probs=103.3
Q ss_pred CceEEEECccH--------------------HHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhh
Q 012547 43 PLRIVGVGAGA--------------------WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSRED 102 (461)
Q Consensus 43 ~mkI~IIGaGa--------------------mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~ 102 (461)
+|||+|.|+|+ -|+.||..+|++ | |+|.+.+.+.+..+. +|
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeA-G-----HDVVLaePn~d~~dd---~~---------- 61 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEA-G-----HDVVLAEPNRDIMDD---EH---------- 61 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHc-C-----CcEEeecCCccccCH---HH----------
Confidence 48999999997 377899999999 8 999999988765442 11
Q ss_pred hHHhhhhcccccchhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-hHHHHHHHHH
Q 012547 103 VLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEEIS 181 (461)
Q Consensus 103 ~~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-~~~~vl~~i~ 181 (461)
...+ ++ .+++.++|-.++++.+++.++.+|-. .+-.+.++|.
T Consensus 62 -----------w~~v---------------ed-----------AGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Iarei~ 104 (340)
T COG4007 62 -----------WKRV---------------ED-----------AGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIAREIL 104 (340)
T ss_pred -----------HHHH---------------Hh-----------cCcEEecCchhhhhcceEEEEecccchhhHHHHHHHH
Confidence 1111 11 25777787788899999999999965 8889999999
Q ss_pred HHhhccCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCcEEEEe-----CcchhHh---hhccCceEEEEeCC
Q 012547 182 RYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLG-----GPNIASE---IYNKEYANARICGA 253 (461)
Q Consensus 182 ~~l~~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vls-----GPn~a~e---v~~g~~~~~~~~~~ 253 (461)
+++.+ +++|. .+=.+++- .+...+...+-.+...+.+.+ -|++..+ +..|+.+...--..
T Consensus 105 ~hvpE---gAVic-nTCT~sp~--------vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h~~yviagr~t~g~elAT 172 (340)
T COG4007 105 EHVPE---GAVIC-NTCTVSPV--------VLYYSLEGELRTKREDVGVSSMHPAGVPGTPQHGHYVIAGRSTEGKELAT 172 (340)
T ss_pred hhCcC---CcEec-ccccCchh--------HHHHHhhhhhcCchhhcCccccCCCCCCCCCCCceEEEeccCCCceeecc
Confidence 99987 56443 33233322 111222222221111122221 1333221 11222221111123
Q ss_pred hhHHHHHHHHhcCCCceEEec-CChHH
Q 012547 254 EKWRKPLAKFLRRPHFTVWDN-GDLVT 279 (461)
Q Consensus 254 ~~~~~~l~~ll~~~g~~v~~s-~Di~g 279 (461)
++..++..++.++.|..+|+. .|+..
T Consensus 173 eEQi~r~velaes~Gk~~yv~padv~s 199 (340)
T COG4007 173 EEQIERCVELAESTGKEVYVLPADVVS 199 (340)
T ss_pred HHHHHHHHHHHHhcCCceEecCHHHHH
Confidence 678899999999999988864 44443
No 119
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.81 E-value=0.00014 Score=70.52 Aligned_cols=142 Identities=18% Similarity=0.195 Sum_probs=92.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|+|+.||.|.||..+...|.+. | |+|..|+++++.++++..++
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~-g-----hdvV~yD~n~~av~~~~~~g------------------------------- 43 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDG-G-----HDVVGYDVNQTAVEELKDEG------------------------------- 43 (300)
T ss_pred CcceeeccchhhHHHHHHHHhC-C-----CeEEEEcCCHHHHHHHHhcC-------------------------------
Confidence 7899999999999999999999 8 99999999998776532211
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHH---HhcCCCEEEEcCCch-hHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQE---AVWDADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~---av~~aDiIIiaVps~-~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
.+..+++.+ -+...-.|-+.||.. .+.++++++++.+.+ +.+||.--|.
T Consensus 44 ------------------------a~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~la~~L~~---GDivIDGGNS 96 (300)
T COG1023 44 ------------------------ATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDDLAPLLSA---GDIVIDGGNS 96 (300)
T ss_pred ------------------------CccccCHHHHHHhcCCCcEEEEEccCCCchHHHHHHHHhhcCC---CCEEEECCcc
Confidence 111122222 245568899999986 899999999999998 5677764443
Q ss_pred CccccccccccCCHHHHHHh---H--hCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcC
Q 012547 200 VEAELEAVPRIITPTQMINR---A--TGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRR 266 (461)
Q Consensus 200 i~~~~~~~~~~~~~se~i~~---~--lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~ 266 (461)
--.+ .+++ . -|.....+..-.|+--++ .| .+.+++++++..+.+..+|..
T Consensus 97 ~y~D------------s~rr~~~l~~kgi~flD~GTSGG~~G~~---~G--~~lMiGG~~~a~~~~~pif~~ 151 (300)
T COG1023 97 NYKD------------SLRRAKLLAEKGIHFLDVGTSGGVWGAE---RG--YCLMIGGDEEAVERLEPIFKA 151 (300)
T ss_pred chHH------------HHHHHHHHHhcCCeEEeccCCCCchhhh---cC--ceEEecCcHHHHHHHHHHHHh
Confidence 2222 2222 1 121111222222332222 11 234678888888999999964
No 120
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.79 E-value=0.00015 Score=72.29 Aligned_cols=81 Identities=22% Similarity=0.281 Sum_probs=57.5
Q ss_pred CceEEEECccHHHHHHHHHHHHh-cCCCCCCeeEE-EEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDS-YGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~-~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
++||+|||+|.||..++..|... .+ +++. +|+|++++.+... . .+.
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~-----~el~aV~dr~~~~a~~~a---------~-------------~~g----- 53 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPG-----LTLSAVAVRDPQRHADFI---------W-------------GLR----- 53 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCC-----eEEEEEECCCHHHHHHHH---------H-------------hcC-----
Confidence 48999999999999999998762 13 6665 7888876543210 0 000
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHH
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEIS 181 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~ 181 (461)
.....+|+++.+.++|+|++|+|...+.++.....
T Consensus 54 --------------------------~~~~~~~~eell~~~D~Vvi~tp~~~h~e~~~~aL 88 (271)
T PRK13302 54 --------------------------RPPPVVPLDQLATHADIVVEAAPASVLRAIVEPVL 88 (271)
T ss_pred --------------------------CCcccCCHHHHhcCCCEEEECCCcHHHHHHHHHHH
Confidence 01234677787888999999999998888776654
No 121
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.75 E-value=0.0018 Score=64.92 Aligned_cols=94 Identities=33% Similarity=0.444 Sum_probs=71.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh-hhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS-VDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~-~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
++|+|||.|+=|.+=|..|.++ | .+|++--|.... .+. . .
T Consensus 19 K~iaIIGYGsQG~ahalNLRDS-G-----lnViiGlr~g~~s~~k-----------A-----------------~----- 59 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDS-G-----LNVIIGLRKGSSSWKK-----------A-----------------K----- 59 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhc-C-----CcEEEEecCCchhHHH-----------H-----------------H-----
Confidence 5899999999999999999999 8 888877666532 111 0 0
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHH-HHHHHhhccCCCCEEEEEeecCc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFE-EISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~-~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
.+ ++++ .+.++|++.||+|++-+|.....++.+ +|.|++++ +. .+..+-|+.
T Consensus 60 ----------~d------------Gf~V-~~v~ea~k~ADvim~L~PDe~q~~vy~~~I~p~Lk~---G~-aL~FaHGfN 112 (338)
T COG0059 60 ----------ED------------GFKV-YTVEEAAKRADVVMILLPDEQQKEVYEKEIAPNLKE---GA-ALGFAHGFN 112 (338)
T ss_pred ----------hc------------CCEe-ecHHHHhhcCCEEEEeCchhhHHHHHHHHhhhhhcC---Cc-eEEeccccc
Confidence 11 2222 457789999999999999999999998 89999997 44 456777876
Q ss_pred cc
Q 012547 202 AE 203 (461)
Q Consensus 202 ~~ 203 (461)
..
T Consensus 113 ih 114 (338)
T COG0059 113 IH 114 (338)
T ss_pred ee
Confidence 54
No 122
>PRK15076 alpha-galactosidase; Provisional
Probab=97.74 E-value=0.00021 Score=75.91 Aligned_cols=82 Identities=21% Similarity=0.205 Sum_probs=53.1
Q ss_pred CceEEEECccHHHHHHHH--HHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 43 PLRIVGVGAGAWGSVFTA--MLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~--~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
++||+|||+|++|.+.+. .++...+ +. ..+|.++|++++.++.... .++. .+...
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~-l~-~~evvLvDid~er~~~~~~-----l~~~-------------~~~~~--- 57 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVPA-LR-DAEIALMDIDPERLEESEI-----VARK-------------LAESL--- 57 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCcc-CC-CCEEEEECCCHHHHHHHHH-----HHHH-------------HHHhc---
Confidence 379999999999977776 5552212 11 1689999999987663221 1111 01100
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCC
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP 169 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVp 169 (461)
+. ...+..++|+.+++++||+||+++-
T Consensus 58 -~~---------------------~~~i~~ttD~~eal~dADfVv~ti~ 84 (431)
T PRK15076 58 -GA---------------------SAKITATTDRREALQGADYVINAIQ 84 (431)
T ss_pred -CC---------------------CeEEEEECCHHHHhCCCCEEeEeee
Confidence 00 0147788998899999999999873
No 123
>PRK07574 formate dehydrogenase; Provisional
Probab=97.72 E-value=0.00016 Score=75.56 Aligned_cols=97 Identities=20% Similarity=0.200 Sum_probs=70.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
-++|+|||.|+||..+|..|..- | .+|..|+|.....+. ...
T Consensus 192 gktVGIvG~G~IG~~vA~~l~~f-G-----~~V~~~dr~~~~~~~--------------------------~~~------ 233 (385)
T PRK07574 192 GMTVGIVGAGRIGLAVLRRLKPF-D-----VKLHYTDRHRLPEEV--------------------------EQE------ 233 (385)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEECCCCCchhh--------------------------Hhh------
Confidence 37899999999999999999876 7 899999987521110 000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCC-chhHHHHHH-HHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVFE-EISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVp-s~~~~~vl~-~i~~~l~~~~~~~iIIs~tkGi 200 (461)
.++....+++++++.||+|++++| ...++.++. +....+++ ++++|.+.-|=
T Consensus 234 -----------------------~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~---ga~lIN~aRG~ 287 (385)
T PRK07574 234 -----------------------LGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKR---GSYLVNTARGK 287 (385)
T ss_pred -----------------------cCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCC---CcEEEECCCCc
Confidence 023334578899999999999999 456777763 34555676 78899888774
Q ss_pred ccc
Q 012547 201 EAE 203 (461)
Q Consensus 201 ~~~ 203 (461)
..+
T Consensus 288 iVD 290 (385)
T PRK07574 288 IVD 290 (385)
T ss_pred hhh
Confidence 443
No 124
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.72 E-value=0.00029 Score=60.48 Aligned_cols=95 Identities=20% Similarity=0.248 Sum_probs=66.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeE-EEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
|||+|||+|.||......+... . +..++ -+++++++..+...+ . +
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~-~---~~~~v~~v~d~~~~~~~~~~~--------~-------------~--------- 46 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRS-S---PDFEVVAVCDPDPERAEAFAE--------K-------------Y--------- 46 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHT-T---TTEEEEEEECSSHHHHHHHHH--------H-------------T---------
T ss_pred CEEEEECCcHHHHHHHHHHHhc-C---CCcEEEEEEeCCHHHHHHHHH--------H-------------h---------
Confidence 6899999999999999888766 2 11454 478888765443100 0 0
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc--CCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~--~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
++...+|.++.+. +.|+|++++|+....+++.+.... +. -|.+-|-+
T Consensus 47 ------------------------~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~------g~-~v~~EKP~ 95 (120)
T PF01408_consen 47 ------------------------GIPVYTDLEELLADEDVDAVIIATPPSSHAEIAKKALEA------GK-HVLVEKPL 95 (120)
T ss_dssp ------------------------TSEEESSHHHHHHHTTESEEEEESSGGGHHHHHHHHHHT------TS-EEEEESSS
T ss_pred ------------------------cccchhHHHHHHHhhcCCEEEEecCCcchHHHHHHHHHc------CC-EEEEEcCC
Confidence 2345677888776 789999999999988888776542 33 35578877
Q ss_pred ccc
Q 012547 201 EAE 203 (461)
Q Consensus 201 ~~~ 203 (461)
...
T Consensus 96 ~~~ 98 (120)
T PF01408_consen 96 ALT 98 (120)
T ss_dssp SSS
T ss_pred cCC
Confidence 654
No 125
>PRK06444 prephenate dehydrogenase; Provisional
Probab=97.71 E-value=7.3e-05 Score=71.24 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=21.7
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcC
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYG 67 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G 67 (461)
|||+|||+ |.||..++..|.++ |
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~-g 24 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN-G 24 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC-C
Confidence 69999999 99999999999888 7
No 126
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=97.70 E-value=0.00037 Score=71.08 Aligned_cols=43 Identities=23% Similarity=0.248 Sum_probs=35.3
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 41 ~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
...+||+|||+|.+|+++|..|+.. |.. .++.|+|++++.++.
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~-~~~---~el~L~D~~~~~~~g 46 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQ-GIA---DELVIIDINKEKAEG 46 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeCCCchhHH
Confidence 3457999999999999999999987 732 379999998876543
No 127
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.70 E-value=0.00041 Score=70.66 Aligned_cols=106 Identities=9% Similarity=0.127 Sum_probs=68.4
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
.+||+|||+|.+|+++|..|+.. |.. .++.|+|++++.++.... + ++ + ...+..
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~-~~~---~el~LiD~~~~~~~g~a~----D-l~--~---------~~~~~~------ 56 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAK-GLA---DELVLVDVVEDKLKGEAM----D-LQ--H---------GSAFLK------ 56 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeCCccHHHHHHH----H-HH--H---------hhccCC------
Confidence 47999999999999999999887 632 589999998875543110 1 11 0 000000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCC--ch--------------hHHHHHHHHHHHhhc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP--ST--------------ETKEVFEEISRYWKE 186 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVp--s~--------------~~~~vl~~i~~~l~~ 186 (461)
...+..++|+++ +++||+||++.- .. .++++.+++.++..
T Consensus 57 ----------------------~~~v~~~~dy~~-~~~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p- 112 (312)
T cd05293 57 ----------------------NPKIEADKDYSV-TANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSP- 112 (312)
T ss_pred ----------------------CCEEEECCCHHH-hCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 014566678875 899999999652 11 25555566666533
Q ss_pred cCCCCEEEEEeecCc
Q 012547 187 RITVPVIISLAKGVE 201 (461)
Q Consensus 187 ~~~~~iIIs~tkGi~ 201 (461)
+.+++.++|-.+
T Consensus 113 ---~~~vivvsNP~d 124 (312)
T cd05293 113 ---NAILLVVSNPVD 124 (312)
T ss_pred ---CcEEEEccChHH
Confidence 467777887554
No 128
>PRK13243 glyoxylate reductase; Reviewed
Probab=97.69 E-value=0.00014 Score=74.60 Aligned_cols=96 Identities=22% Similarity=0.269 Sum_probs=69.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.-++|+|||.|.+|..+|..|..- | .+|..|+|+...... ..
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~-G-----~~V~~~d~~~~~~~~---------------------------~~----- 190 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGF-G-----MRILYYSRTRKPEAE---------------------------KE----- 190 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEECCCCChhhH---------------------------HH-----
Confidence 347999999999999999999877 7 899999987532100 00
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHH-HHHHHHhhccCCCCEEEEEeec
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF-EEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl-~~i~~~l~~~~~~~iIIs~tkG 199 (461)
. ... ..++++++++||+|++++|. ..++.++ ++....+++ ++++|.++-|
T Consensus 191 ----~--------------------~~~-~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~---ga~lIN~aRg 242 (333)
T PRK13243 191 ----L--------------------GAE-YRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKP---TAILVNTARG 242 (333)
T ss_pred ----c--------------------CCE-ecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCC---CeEEEECcCc
Confidence 0 122 24688889999999999995 4566666 445556676 7888888877
Q ss_pred Cccc
Q 012547 200 VEAE 203 (461)
Q Consensus 200 i~~~ 203 (461)
-..+
T Consensus 243 ~~vd 246 (333)
T PRK13243 243 KVVD 246 (333)
T ss_pred hhcC
Confidence 5443
No 129
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.68 E-value=0.00029 Score=71.59 Aligned_cols=109 Identities=19% Similarity=0.260 Sum_probs=70.2
Q ss_pred hHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhh
Q 012547 29 LDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLI 108 (461)
Q Consensus 29 ~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~ 108 (461)
++..+..+|. ...++|+|||+|.||..++..|... | .++|++++|+.++++.+.. .
T Consensus 166 v~~a~~~~~~--l~~~~V~ViGaG~iG~~~a~~L~~~-g----~~~V~v~~r~~~ra~~la~--------~--------- 221 (311)
T cd05213 166 VELAEKIFGN--LKGKKVLVIGAGEMGELAAKHLAAK-G----VAEITIANRTYERAEELAK--------E--------- 221 (311)
T ss_pred HHHHHHHhCC--ccCCEEEEECcHHHHHHHHHHHHHc-C----CCEEEEEeCCHHHHHHHHH--------H---------
Confidence 4455666654 3347999999999999999999875 4 2789999999876543111 0
Q ss_pred hcccccchhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccC
Q 012547 109 RRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERI 188 (461)
Q Consensus 109 ~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~ 188 (461)
+.. .....+++.+++.++|+||.|+|+......++.+......+
T Consensus 222 -----~g~------------------------------~~~~~~~~~~~l~~aDvVi~at~~~~~~~~~~~~~~~~~~~- 265 (311)
T cd05213 222 -----LGG------------------------------NAVPLDELLELLNEADVVISATGAPHYAKIVERAMKKRSGK- 265 (311)
T ss_pred -----cCC------------------------------eEEeHHHHHHHHhcCCEEEECCCCCchHHHHHHHHhhCCCC-
Confidence 000 01112356677889999999999877655555543322111
Q ss_pred CCCEEEEEee
Q 012547 189 TVPVIISLAK 198 (461)
Q Consensus 189 ~~~iIIs~tk 198 (461)
+.++|.++.
T Consensus 266 -~~~viDlav 274 (311)
T cd05213 266 -PRLIVDLAV 274 (311)
T ss_pred -CeEEEEeCC
Confidence 456776663
No 130
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=97.67 E-value=0.00035 Score=71.15 Aligned_cols=95 Identities=26% Similarity=0.375 Sum_probs=68.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
-++|+|||.|+||..+|..|..- | .+|..|++..+... +..
T Consensus 136 g~tvgIvG~G~IG~~vA~~l~af-G-----~~V~~~~~~~~~~~-----------------------------~~~---- 176 (312)
T PRK15469 136 DFTIGILGAGVLGSKVAQSLQTW-G-----FPLRCWSRSRKSWP-----------------------------GVQ---- 176 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCCCCCC-----------------------------Cce----
Confidence 37999999999999999999976 7 89999998653210 000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHHH-HHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFE-EISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl~-~i~~~l~~~~~~~iIIs~tkGi 200 (461)
......++++++++||+|++++|. ..++.++. +....+++ ++++|.+.-|=
T Consensus 177 ------------------------~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~---ga~lIN~aRG~ 229 (312)
T PRK15469 177 ------------------------SFAGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPD---GAYLLNLARGV 229 (312)
T ss_pred ------------------------eecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCC---CcEEEECCCcc
Confidence 011124688899999999999994 56676664 34445666 78899888875
Q ss_pred ccc
Q 012547 201 EAE 203 (461)
Q Consensus 201 ~~~ 203 (461)
..+
T Consensus 230 vVd 232 (312)
T PRK15469 230 HVV 232 (312)
T ss_pred ccC
Confidence 444
No 131
>PF08546 ApbA_C: Ketopantoate reductase PanE/ApbA C terminal; InterPro: IPR013752 This is the C-terminal domain of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, 1.1.1.169 from EC. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) = 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway []. ApbA and PanE are allelic []. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway []. ; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 1YJQ_A 1KS9_A 2OFP_A 1YON_A 2EW2_B 3EGO_B 3HN2_D 3GHY_B 3G17_E 3HWR_B ....
Probab=97.65 E-value=0.00053 Score=59.91 Aligned_cols=113 Identities=15% Similarity=0.131 Sum_probs=64.9
Q ss_pred ChHHHHHHHHHHH-HHHHHHhhcc---C--ccch-HHHHHHHHHHHHHHHHHHhCCCchh--hccChhhhhhhhccccch
Q 012547 276 DLVTHEVMGGLKN-VYAIGAALTN---E--SATS-KSVYFAHCTSEMVFITHLLAEEPEK--LAGPLLADTYVTLLKGRN 346 (461)
Q Consensus 276 Di~gve~~galKN-v~Ai~~Gi~~---g--~~n~-~a~l~~~~~~Em~~l~~a~G~~~~t--~~g~glgDl~~T~~~sRN 346 (461)
|+.+..|.+.+.| ++...+.+.+ + ..+. ...++...+.|+..++++.|..... +.. .+.+.... .+.+
T Consensus 1 di~~~~w~Kl~~n~~~n~l~al~~~~~g~l~~~~~~~~~~~~l~~E~~~va~a~G~~l~~~~~~~-~~~~~~~~--~~~~ 77 (125)
T PF08546_consen 1 DIQRERWEKLIFNAAINPLTALTGCTNGELLENPEARELIRALMREVIAVARALGIPLDPDDLEE-AIERLIRS--TPDN 77 (125)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHSHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHH-HHHHHHHC--TTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHhChhHHHHHHHHHHHHHHHHHHhhccCcHHHHHH-HHHHHHHh--cCCc
Confidence 7888999998888 3333444433 2 1221 2257888999999999999975321 100 11111111 1111
Q ss_pred hHHHHHHhcCCChhhHhhhhcCCCc-cchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012547 347 AWYGQELAKGRLTLDLGDSIKGKGM-IQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 419 (461)
Q Consensus 347 ~~~G~~l~~g~~~~~~~~~~~~~~~-vEG~~~~~~v~~l~~~~~l~~~~~~~~~~~~~v~~~Pi~~~ly~il~~ 419 (461)
+ ++...|..+++++ +|.+++ .++++++++|+ + +|.++++|++++.
T Consensus 78 ~-----------~SM~~D~~~gr~tEid~i~G--~vv~~a~~~gv--------------~-~P~~~~i~~lvk~ 123 (125)
T PF08546_consen 78 R-----------SSMLQDIEAGRPTEIDYING--YVVRLAKKHGV--------------P-TPVNETIYALVKA 123 (125)
T ss_dssp -------------HHHHHHHTTB--SHHHTHH--HHHHHHHHTT------------------HHHHHHHHHHHH
T ss_pred c-----------ccHHHHHHHcccccHHHHHH--HHHHHHHHHCC--------------C-CcHHHHHHHHHHH
Confidence 1 1112232334444 677766 99999999995 7 8999999999874
No 132
>PLN03139 formate dehydrogenase; Provisional
Probab=97.63 E-value=0.00025 Score=74.21 Aligned_cols=98 Identities=20% Similarity=0.214 Sum_probs=69.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.-++|+|||.|.||..+|..|..- | .+|..|+|+....+. ...
T Consensus 198 ~gktVGIVG~G~IG~~vA~~L~af-G-----~~V~~~d~~~~~~~~--------------------------~~~----- 240 (386)
T PLN03139 198 EGKTVGTVGAGRIGRLLLQRLKPF-N-----CNLLYHDRLKMDPEL--------------------------EKE----- 240 (386)
T ss_pred CCCEEEEEeecHHHHHHHHHHHHC-C-----CEEEEECCCCcchhh--------------------------Hhh-----
Confidence 347999999999999999999876 7 899999887421110 000
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHH-HHHHHHhhccCCCCEEEEEeec
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF-EEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl-~~i~~~l~~~~~~~iIIs~tkG 199 (461)
.++....++++++.+||+|++++|. ..++.++ +++...+++ ++++|.+.-|
T Consensus 241 ------------------------~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~---ga~lIN~aRG 293 (386)
T PLN03139 241 ------------------------TGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKK---GVLIVNNARG 293 (386)
T ss_pred ------------------------cCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCC---CeEEEECCCC
Confidence 0233346788999999999999994 5677766 345555666 7888888877
Q ss_pred Cccc
Q 012547 200 VEAE 203 (461)
Q Consensus 200 i~~~ 203 (461)
=..+
T Consensus 294 ~iVD 297 (386)
T PLN03139 294 AIMD 297 (386)
T ss_pred chhh
Confidence 4433
No 133
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=97.61 E-value=0.00035 Score=70.67 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=32.2
Q ss_pred EEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 46 I~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
|+|||+|.+|+++|..|+.. |.. +++.++|++++.++.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~-~~~---~el~l~D~~~~~~~g 38 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAK-GLA---SELVLVDVNEEKAKG 38 (300)
T ss_pred CEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeCCccHHHH
Confidence 68999999999999999987 632 589999999876654
No 134
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.60 E-value=0.00021 Score=64.27 Aligned_cols=41 Identities=20% Similarity=0.210 Sum_probs=34.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
+.++|+|+|+|.||.+++..|++. | .++|.+|+|+.+..+.
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~-g----~~~v~v~~r~~~~~~~ 58 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAEL-G----AAKIVIVNRTLEKAKA 58 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-C----CCEEEEEcCCHHHHHH
Confidence 457999999999999999999887 5 2689999999876543
No 135
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=97.59 E-value=0.00046 Score=70.15 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=29.9
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
|||+|+|+ |..|..++..|+.. |.. .+|.++++++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~-g~~---~~v~lvd~~~ 36 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKE-DVV---KEINLISRPK 36 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhC-CCC---CEEEEEECcc
Confidence 79999998 99999999999988 721 3699999964
No 136
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=97.57 E-value=0.00024 Score=66.26 Aligned_cols=99 Identities=22% Similarity=0.241 Sum_probs=65.4
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 40 ~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
+-..++|+|||.|.+|.++|..+..- | .+|..|+|+....+. ...
T Consensus 33 ~l~g~tvgIiG~G~IG~~vA~~l~~f-G-----~~V~~~d~~~~~~~~--------------------------~~~--- 77 (178)
T PF02826_consen 33 ELRGKTVGIIGYGRIGRAVARRLKAF-G-----MRVIGYDRSPKPEEG--------------------------ADE--- 77 (178)
T ss_dssp -STTSEEEEESTSHHHHHHHHHHHHT-T------EEEEEESSCHHHHH--------------------------HHH---
T ss_pred ccCCCEEEEEEEcCCcCeEeeeeecC-C-----ceeEEecccCChhhh--------------------------ccc---
Confidence 33457999999999999999999866 7 899999999753210 000
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHH-HHHHHHhhccCCCCEEEEEe
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF-EEISRYWKERITVPVIISLA 197 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl-~~i~~~l~~~~~~~iIIs~t 197 (461)
... ...++++.++.||+|++++|. ...+.++ ++....+++ ++++|.+.
T Consensus 78 --------------------------~~~-~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~---ga~lvN~a 127 (178)
T PF02826_consen 78 --------------------------FGV-EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKP---GAVLVNVA 127 (178)
T ss_dssp --------------------------TTE-EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTT---TEEEEESS
T ss_pred --------------------------ccc-eeeehhhhcchhhhhhhhhccccccceeeeeeeeecccc---ceEEEecc
Confidence 022 235788999999999999994 3344433 233344565 68899888
Q ss_pred ecCccc
Q 012547 198 KGVEAE 203 (461)
Q Consensus 198 kGi~~~ 203 (461)
.|=..+
T Consensus 128 RG~~vd 133 (178)
T PF02826_consen 128 RGELVD 133 (178)
T ss_dssp SGGGB-
T ss_pred chhhhh
Confidence 774433
No 137
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=97.57 E-value=0.0014 Score=64.82 Aligned_cols=106 Identities=20% Similarity=0.229 Sum_probs=63.4
Q ss_pred HHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCcE---EEE
Q 012547 155 QEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENI---LYL 231 (461)
Q Consensus 155 ~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v---~vl 231 (461)
.+++.++|+||+|||...+.++++++.+++++ +++|..++ ++-. .+.+.+.+..+. ..++ --+
T Consensus 40 ~~~~~~~DlvvlavP~~~~~~~l~~~~~~~~~---~~iv~Dv~-SvK~---------~~~~~~~~~~~~-~~~~v~~HPM 105 (258)
T PF02153_consen 40 IEAVEDADLVVLAVPVSAIEDVLEEIAPYLKP---GAIVTDVG-SVKA---------PIVEAMERLLPE-GVRFVGGHPM 105 (258)
T ss_dssp HHHGGCCSEEEE-S-HHHHHHHHHHHHCGS-T---TSEEEE---S-CH---------HHHHHHHHHHTS-SGEEEEEEES
T ss_pred HhHhcCCCEEEEcCCHHHHHHHHHHhhhhcCC---CcEEEEeC-CCCH---------HHHHHHHHhcCc-ccceeecCCC
Confidence 46789999999999999999999999999887 67766554 3321 233456665541 1222 134
Q ss_pred eCc-----chhH-hhhccCceEEEEeC--ChhHHHHHHHHhcCCCceEEec
Q 012547 232 GGP-----NIAS-EIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWDN 274 (461)
Q Consensus 232 sGP-----n~a~-ev~~g~~~~~~~~~--~~~~~~~l~~ll~~~g~~v~~s 274 (461)
.|| ..+. +...|....++... +.+..+.+.+++...|.++...
T Consensus 106 ~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~ 156 (258)
T PF02153_consen 106 AGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGARVVEM 156 (258)
T ss_dssp CSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE-
T ss_pred CCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEEc
Confidence 555 2222 33455544444332 3567899999999999887654
No 138
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.55 E-value=0.00023 Score=63.51 Aligned_cols=41 Identities=24% Similarity=0.277 Sum_probs=35.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
...++.|||+|.+|.+++..|+.. |. .+|++++|+.+++++
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~-g~----~~i~i~nRt~~ra~~ 51 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAAL-GA----KEITIVNRTPERAEA 51 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHT-TS----SEEEEEESSHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-CC----CEEEEEECCHHHHHH
Confidence 347899999999999999999998 72 569999999887665
No 139
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=97.55 E-value=0.0011 Score=67.23 Aligned_cols=153 Identities=13% Similarity=0.155 Sum_probs=99.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
.+|+|||-|+||..+|..|.++ | |.|...+|.+ .+.++ ++ | +.
T Consensus 53 l~IaIIGfGnmGqflAetli~a-G-----h~li~hsRsd--yssaa--------~~-------------y--------g~ 95 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDA-G-----HGLICHSRSD--YSSAA--------EK-------------Y--------GS 95 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhc-C-----ceeEecCcch--hHHHH--------HH-------------h--------cc
Confidence 6899999999999999999999 8 9999999986 22211 00 1 01
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHH-hhccCCCCEEEEEeecCcc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY-WKERITVPVIISLAKGVEA 202 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~-l~~~~~~~iIIs~tkGi~~ 202 (461)
. ......|+ .-+..|+|++||..-.++.++...-+. ++. +++++..+.--.+
T Consensus 96 ~----------------------~ft~lhdl--cerhpDvvLlctsilsiekilatypfqrlrr---gtlfvdvlSvKef 148 (480)
T KOG2380|consen 96 A----------------------KFTLLHDL--CERHPDVVLLCTSILSIEKILATYPFQRLRR---GTLFVDVLSVKEF 148 (480)
T ss_pred c----------------------ccccHHHH--HhcCCCEEEEEehhhhHHHHHHhcCchhhcc---ceeEeeeeecchh
Confidence 0 01111222 236789999999999999999888766 555 6777755522222
Q ss_pred ccccccccCCHHHHHHhHhCCCCCcE--EEEeCcchhHhhhccCceEEE---Ee---CChhHHHHHHHHhcCCCce
Q 012547 203 ELEAVPRIITPTQMINRATGVPIENI--LYLGGPNIASEIYNKEYANAR---IC---GAEKWRKPLAKFLRRPHFT 270 (461)
Q Consensus 203 ~~~~~~~~~~~se~i~~~lg~~~~~v--~vlsGPn~a~ev~~g~~~~~~---~~---~~~~~~~~l~~ll~~~g~~ 270 (461)
+ -+.+.++++....-+ -.+-||--..+-.+|.|-... ++ ..++.++.+-++|.+.+-.
T Consensus 149 e----------k~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~ercE~fleIf~cegck 214 (480)
T KOG2380|consen 149 E----------KELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPERCEFFLEIFACEGCK 214 (480)
T ss_pred H----------HHHHHHhCccccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHHHHHHHHHHHhcCCe
Confidence 2 245677776542111 235678755666666654331 22 2367889999999887754
No 140
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.55 E-value=0.00035 Score=72.17 Aligned_cols=105 Identities=15% Similarity=0.211 Sum_probs=75.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
++.|+|||.|.||+-+|..++++ | +.|.+|+|+.++.++. +++.. ....+
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~-G-----~~VavyNRt~~ktd~f--------~~~~~-----------~~k~i----- 52 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADH-G-----YTVAVYNRTTEKTDEF--------LAERA-----------KGKNI----- 52 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhc-C-----ceEEEEeCCHHHHHHH--------HHhCc-----------cCCCc-----
Confidence 35799999999999999999999 8 9999999999887752 22211 00000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
.+.....++...++..--|++.|++ ..+.+++++|.|++.+ +.++|.--|..-
T Consensus 53 -----------------------~~~~sieefV~~Le~PRkI~lMVkAG~~VD~~I~~L~p~Le~---gDIiIDGGNs~y 106 (473)
T COG0362 53 -----------------------VPAYSIEEFVASLEKPRKILLMVKAGTPVDAVIEQLLPLLEK---GDIIIDGGNSHY 106 (473)
T ss_pred -----------------------cccCcHHHHHHHhcCCceEEEEEecCCcHHHHHHHHHhhcCC---CCEEEeCCCcCC
Confidence 0111123344457788899999998 5688999999999998 678887666554
Q ss_pred cc
Q 012547 202 AE 203 (461)
Q Consensus 202 ~~ 203 (461)
.+
T Consensus 107 ~D 108 (473)
T COG0362 107 KD 108 (473)
T ss_pred ch
Confidence 44
No 141
>PRK05442 malate dehydrogenase; Provisional
Probab=97.54 E-value=0.00081 Score=68.94 Aligned_cols=41 Identities=22% Similarity=0.407 Sum_probs=32.3
Q ss_pred CCCceEEEECc-cHHHHHHHHHHHHhcCCCC--CCeeEEEEecCc
Q 012547 41 GDPLRIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPG 82 (461)
Q Consensus 41 ~~~mkI~IIGa-GamG~alA~~La~~~G~~~--~~~~V~l~~r~~ 82 (461)
.+++||+|||+ |.+|+++|..|+.. |++. ...++.|+|+++
T Consensus 2 ~~~~KV~IiGaaG~VG~~~a~~l~~~-~~~~~~~~~el~LiDi~~ 45 (326)
T PRK05442 2 KAPVRVAVTGAAGQIGYSLLFRIASG-DMLGKDQPVILQLLEIPP 45 (326)
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHhh-hhcCCCCccEEEEEecCC
Confidence 46789999998 99999999999877 6432 012799999864
No 142
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=97.52 E-value=0.00095 Score=68.35 Aligned_cols=40 Identities=20% Similarity=0.389 Sum_probs=32.1
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCC--CCeeEEEEecCc
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPG 82 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~--~~~~V~l~~r~~ 82 (461)
++.||+|||+ |.+|+++|..|+.. |.+. ...++.|+|+++
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~-~~~~~~~~~el~L~Di~~ 44 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASG-ELFGKDQPVVLHLLDIPP 44 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhC-CcccCCCccEEEEEecCC
Confidence 5789999998 99999999999987 6432 112799999965
No 143
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=97.50 E-value=0.003 Score=66.97 Aligned_cols=100 Identities=27% Similarity=0.346 Sum_probs=70.0
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
++|+|||.|+.|.+-|..|... | ++|++--|... ++. +. ...+..
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdS-G-----vnVvvglr~~~-id~-----------~~-----------~s~~kA------ 81 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDS-G-----LDISYALRKEA-IAE-----------KR-----------ASWRKA------ 81 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccc-c-----ceeEEeccccc-ccc-----------cc-----------chHHHH------
Confidence 7999999999999999999888 8 88886666531 110 00 000000
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
..+| +.+ .+++++++.||+|++.+|......+.+++.|++++ ++ .+..+-|+...
T Consensus 82 --------~~dG------------F~v-~~~~Ea~~~ADvVviLlPDt~q~~v~~~i~p~LK~---Ga-~L~fsHGFni~ 136 (487)
T PRK05225 82 --------TENG------------FKV-GTYEELIPQADLVINLTPDKQHSDVVRAVQPLMKQ---GA-ALGYSHGFNIV 136 (487)
T ss_pred --------HhcC------------Ccc-CCHHHHHHhCCEEEEcCChHHHHHHHHHHHhhCCC---CC-EEEecCCceee
Confidence 0112 222 46888999999999999988888888999999997 44 45567677653
No 144
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.45 E-value=0.00037 Score=70.18 Aligned_cols=38 Identities=13% Similarity=0.199 Sum_probs=33.2
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (461)
...+|+|+|+|.+|.++|..|... | .+|++++|+++..
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~-G-----~~V~v~~R~~~~~ 187 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSAL-G-----ARVFVGARSSADL 187 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHC-C-----CEEEEEeCCHHHH
Confidence 346899999999999999999987 7 8999999987643
No 145
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.44 E-value=0.00043 Score=70.50 Aligned_cols=77 Identities=27% Similarity=0.340 Sum_probs=54.7
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+..+|+|||+|.+|.+++..+....+ ..+|++|+|++++++.+.+ .+.+ . +
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~----~~~V~V~~Rs~~~a~~~a~-----~~~~-------------~--g----- 174 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRP----IKQVRVWGRDPAKAEALAA-----ELRA-------------Q--G----- 174 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCC----CCEEEEEcCCHHHHHHHHH-----HHHh-------------c--C-----
Confidence 45789999999999999986664212 2789999999887664221 1100 0 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST 171 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~ 171 (461)
..+....++++++.+||+|+.|+|+.
T Consensus 175 ------------------------~~~~~~~~~~~av~~aDIVi~aT~s~ 200 (314)
T PRK06141 175 ------------------------FDAEVVTDLEAAVRQADIISCATLST 200 (314)
T ss_pred ------------------------CceEEeCCHHHHHhcCCEEEEeeCCC
Confidence 02445678888899999999999876
No 146
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.44 E-value=0.0016 Score=66.14 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=32.4
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
||+|||+|.+|+++|..|+.. |.. .++.|+|.+++.++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~-~~~---~elvL~Di~~~~a~ 38 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALAL-GLF---SEIVLIDVNEGVAE 38 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeCCcchhh
Confidence 799999999999999999987 642 47999999877654
No 147
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.41 E-value=0.0014 Score=66.71 Aligned_cols=34 Identities=15% Similarity=0.335 Sum_probs=29.5
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
|||+|||+ |++|+++|..|+.. |.. .++.|+|.+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~-~~~---~elvLiDi~ 35 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLN-PLV---SELALYDIV 35 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-CCC---cEEEEEecC
Confidence 79999999 99999999999877 531 479999987
No 148
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=97.40 E-value=0.0013 Score=66.83 Aligned_cols=39 Identities=18% Similarity=0.285 Sum_probs=31.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
|||+|||+|.+|+++|..|... +. . .++.|+++.++.++
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~-~~-~--~el~LiDi~~~~~~ 39 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQ-GL-G--SELVLIDINEEKAE 39 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcc-cc-c--ceEEEEEccccccc
Confidence 6999999999999999999765 42 1 48999999965443
No 149
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.40 E-value=0.0099 Score=61.89 Aligned_cols=235 Identities=16% Similarity=0.206 Sum_probs=134.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
.+|.|+|+|..+--+|..+.+. + ++.|-+++|...+.+. +.+-++++. ..+...+.-....
T Consensus 2 ~~VLI~GtGPvAiQLAv~lk~~-~----~~~vGi~~R~S~rSq~-----f~~aL~~~~---------~~~~v~vqn~~h~ 62 (429)
T PF10100_consen 2 GNVLIVGTGPVAIQLAVILKKH-G----NCRVGIVGRESVRSQR-----FFEALARSD---------GLFEVSVQNEQHQ 62 (429)
T ss_pred CceEEEcCCHHHHHHHHHHHhc-c----CceeeeecCcchhHHH-----HHHHHHhCC---------CEEEEeecchhhh
Confidence 5799999999999999999877 5 3689999997654433 222333211 0111111000000
Q ss_pred CccchhhhhhhcccccCCCCCCCCe-EEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHH-hhccCCCCEEEEEeecCc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPL-KVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY-WKERITVPVIISLAKGVE 201 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i-~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~-l~~~~~~~iIIs~tkGi~ 201 (461)
.+ +|-+ .+ .+..|.++...+.|.+|+|||+++..+|+++|.+- ++. -..+|-++..++
T Consensus 63 -~l-------~G~~---------~id~~~~~~~~i~g~WdtlILavtaDAY~~VL~ql~~~~L~~---vk~iVLvSPtfG 122 (429)
T PF10100_consen 63 -AL-------SGEC---------TIDHVFQDYEEIEGEWDTLILAVTADAYLDVLQQLPWEVLKR---VKSIVLVSPTFG 122 (429)
T ss_pred -hh-------cCeE---------EhhHhhcCHHHhcccccEEEEEechHHHHHHHHhcCHHHHhh---CCEEEEECcccc
Confidence 00 0000 01 23468888888999999999999999999999764 333 234555666665
Q ss_pred cccccccccCCHHHHHHhHhCCCCCcEEEE---eCcchhH------hh-hccCceEEEEe---CChhHHHHHHHHhcCCC
Q 012547 202 AELEAVPRIITPTQMINRATGVPIENILYL---GGPNIAS------EI-YNKEYANARIC---GAEKWRKPLAKFLRRPH 268 (461)
Q Consensus 202 ~~~~~~~~~~~~se~i~~~lg~~~~~v~vl---sGPn~a~------ev-~~g~~~~~~~~---~~~~~~~~l~~ll~~~g 268 (461)
.. ..+...+.+. +. ...+... .|-.... .+ ..+.-.-+.++ ++......++.+|...|
T Consensus 123 S~-------~lv~~~l~~~-~~-~~EVISFStY~gdTr~~d~~~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~g 193 (429)
T PF10100_consen 123 SH-------LLVKGFLNDL-GP-DAEVISFSTYYGDTRWSDGEQPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLG 193 (429)
T ss_pred hH-------HHHHHHHHhc-CC-CceEEEeecccccceeccCCCcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcC
Confidence 43 2333444332 21 1122111 1111100 00 01100111222 24567899999999999
Q ss_pred ceEEecCChHHHHHH--------HHHHHHHHHHHhhcc------------CccchHHH--HHHHHHHHHHHHHHHhCCCc
Q 012547 269 FTVWDNGDLVTHEVM--------GGLKNVYAIGAALTN------------ESATSKSV--YFAHCTSEMVFITHLLAEEP 326 (461)
Q Consensus 269 ~~v~~s~Di~gve~~--------galKNv~Ai~~Gi~~------------g~~n~~a~--l~~~~~~Em~~l~~a~G~~~ 326 (461)
+.+...+...-+|-- ..+.|-+++.+=+.. .|+=+... -|...-.||..+.+++|+++
T Consensus 194 I~~~~~~~pl~AE~rNislYVHpplfmndfsL~aIF~~~~~~kYvYKL~PEGPIT~~~I~~M~~lw~Ei~~i~~~l~~~~ 273 (429)
T PF10100_consen 194 IQLEVMDNPLEAESRNISLYVHPPLFMNDFSLNAIFEEDGVPKYVYKLFPEGPITPTLIRDMVQLWKEIMEILNKLGIEP 273 (429)
T ss_pred CeEEEeCChHhhhhcccceecCChHhhChhhHHHHhCCCCCcceEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 999999988887763 345666666553321 13333322 25566799999999999843
No 150
>PRK06436 glycerate dehydrogenase; Provisional
Probab=97.38 E-value=0.00055 Score=69.44 Aligned_cols=93 Identities=16% Similarity=0.240 Sum_probs=65.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.-++|+|||.|+||..+|..+..- | .+|..|+|+... .+.
T Consensus 121 ~gktvgIiG~G~IG~~vA~~l~af-G-----~~V~~~~r~~~~------------------------------~~~---- 160 (303)
T PRK06436 121 YNKSLGILGYGGIGRRVALLAKAF-G-----MNIYAYTRSYVN------------------------------DGI---- 160 (303)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEECCCCcc------------------------------cCc----
Confidence 347999999999999999877654 7 899999986420 000
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHHH-HHHHHhhccCCCCEEEEEeec
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFE-EISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl~-~i~~~l~~~~~~~iIIs~tkG 199 (461)
. ....++++++++||+|++++|. ..++.++. +....+++ ++++|.++-|
T Consensus 161 -------------------------~-~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~---ga~lIN~sRG 211 (303)
T PRK06436 161 -------------------------S-SIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRK---GLAIINVARA 211 (303)
T ss_pred -------------------------c-cccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCC---CeEEEECCCc
Confidence 0 0124678889999999999995 45666553 34444566 6888888877
Q ss_pred Cccc
Q 012547 200 VEAE 203 (461)
Q Consensus 200 i~~~ 203 (461)
-..+
T Consensus 212 ~~vd 215 (303)
T PRK06436 212 DVVD 215 (303)
T ss_pred cccC
Confidence 4443
No 151
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.37 E-value=0.0013 Score=67.39 Aligned_cols=41 Identities=20% Similarity=0.400 Sum_probs=32.0
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCC--CCeeEEEEecCch
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPGR 83 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~--~~~~V~l~~r~~~ 83 (461)
+++||+|||+ |.+|+++|..|+.. |.+. ...++.|+|.+++
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~-~~~~~~~~~el~L~Di~~~ 44 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASG-EMFGPDQPVILQLLELPQA 44 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhc-cccCCCCceEEEEEecCCc
Confidence 3679999999 99999999999987 6532 0127999998653
No 152
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=97.32 E-value=0.00068 Score=73.81 Aligned_cols=95 Identities=21% Similarity=0.256 Sum_probs=67.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
++|+|||.|.+|..+|..|..- | .+|..|++.... +. . ..
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~f-G-----~~V~~~d~~~~~-~~-------------------------~-~~------- 178 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAF-G-----MKVLAYDPYISP-ER-------------------------A-EQ------- 178 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-C-----CEEEEECCCCCh-hH-------------------------H-Hh-------
Confidence 6899999999999999999866 7 899999875321 00 0 00
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHH-HHHHHHhhccCCCCEEEEEeecCc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF-EEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl-~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
+ .+...+++++++++||+|++++|. ..++.++ ++....+++ ++++|.++-|=.
T Consensus 179 --~--------------------g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~---ga~lIN~aRG~~ 233 (525)
T TIGR01327 179 --L--------------------GVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKK---GVIIVNCARGGI 233 (525)
T ss_pred --c--------------------CCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCC---CeEEEEcCCCce
Confidence 0 233345788999999999999995 4666666 233345666 688898887744
Q ss_pred cc
Q 012547 202 AE 203 (461)
Q Consensus 202 ~~ 203 (461)
.+
T Consensus 234 vd 235 (525)
T TIGR01327 234 ID 235 (525)
T ss_pred eC
Confidence 43
No 153
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.31 E-value=0.00072 Score=73.66 Aligned_cols=95 Identities=21% Similarity=0.178 Sum_probs=68.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
-++|+|||.|.+|..+|..+..- | .+|..|++.... +. ...
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~f-G-----~~V~~~d~~~~~-~~--------------------------~~~------ 180 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKAF-G-----MKVIAYDPYISP-ER--------------------------AAQ------ 180 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEECCCCCh-hH--------------------------HHh------
Confidence 47899999999999999999876 7 899999986421 00 000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHH-HHHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF-EEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl-~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
..+... ++++++++||+|++++|. ..++.++ .+....+++ ++++|.++-|=
T Consensus 181 -----------------------~g~~~~-~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~---ga~lIN~aRG~ 233 (526)
T PRK13581 181 -----------------------LGVELV-SLDELLARADFITLHTPLTPETRGLIGAEELAKMKP---GVRIINCARGG 233 (526)
T ss_pred -----------------------cCCEEE-cHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCC---CeEEEECCCCc
Confidence 012333 688899999999999995 4666666 445555676 68888888775
Q ss_pred ccc
Q 012547 201 EAE 203 (461)
Q Consensus 201 ~~~ 203 (461)
..+
T Consensus 234 ~vd 236 (526)
T PRK13581 234 IID 236 (526)
T ss_pred eeC
Confidence 443
No 154
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=97.31 E-value=0.00036 Score=67.29 Aligned_cols=117 Identities=21% Similarity=0.293 Sum_probs=79.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhh---hHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAE---HLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~---~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
-||+|+|+|-.|+++|-.+|.. | ++|.+||..++++...-++ .+.. +++++ .+.+
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~-G-----yqVqlYDI~e~Ql~~ALen~~Kel~~-Lee~g-----------~lrG---- 61 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASS-G-----YQVQLYDILEKQLQTALENVEKELRK-LEEHG-----------LLRG---- 61 (313)
T ss_pred cceeEeecccccchHHHHHhcc-C-----ceEEEeeccHHHHHHHHHHHHHHHHH-HHHhh-----------hhcc----
Confidence 4899999999999999999999 8 9999999998877642110 1100 11111 1111
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch--hHHHHHHHHHHHhhccCCCCEEEEEee
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~--~~~~vl~~i~~~l~~~~~~~iIIs~tk 198 (461)
.+.++|- +.-|..|++++|++++|=.|=.|+|.+ ..+.++++|-..+.+ .+++-|-+.
T Consensus 62 ----nlsa~eq-------------la~is~t~~l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~---~tIlaSSTS 121 (313)
T KOG2305|consen 62 ----NLSADEQ-------------LALISGTTSLNELVKGAIHIQECVPEDLNLKKQLYKQLDEIADP---TTILASSTS 121 (313)
T ss_pred ----CccHHHH-------------HHHHhCCccHHHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCC---ceEEecccc
Confidence 2222211 224677899999999999999999985 577788888888776 455555444
Q ss_pred cCcc
Q 012547 199 GVEA 202 (461)
Q Consensus 199 Gi~~ 202 (461)
.+-+
T Consensus 122 t~mp 125 (313)
T KOG2305|consen 122 TFMP 125 (313)
T ss_pred ccCh
Confidence 4433
No 155
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=97.31 E-value=0.0027 Score=66.46 Aligned_cols=44 Identities=14% Similarity=0.283 Sum_probs=32.7
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCe--eEEEE--ecCchhhh
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKV--LIRIW--RRPGRSVD 86 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~--~V~l~--~r~~~~~~ 86 (461)
++.||+|||+ |++|+++|..|+.. |.+..+. .+.|+ +++++.++
T Consensus 43 ~p~KV~IIGAaG~VG~~~A~~l~~~-~l~~~~~ei~L~L~diD~~~~~a~ 91 (387)
T TIGR01757 43 KTVNVAVSGAAGMISNHLLFMLASG-EVFGQDQPIALKLLGSERSKEALE 91 (387)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhc-cccCCCCceEEEEeccCccchhhh
Confidence 4689999999 99999999999987 7554212 34445 77776654
No 156
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=97.29 E-value=0.0019 Score=65.80 Aligned_cols=121 Identities=14% Similarity=0.246 Sum_probs=74.4
Q ss_pred eEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 45 RIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 45 kI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
||+|||+ |++|+++|..|+.. ++. .++.|+|+++...+. + + +...
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~-~~~---~elvL~Di~~a~g~a-----~-D------------------L~~~------ 46 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQ-PYV---SELSLYDIAGAAGVA-----A-D------------------LSHI------ 46 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhC-CCC---cEEEEecCCCCcEEE-----c-h------------------hhcC------
Confidence 7999999 99999999999887 632 479999988621111 0 0 0000
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEE-e-c-CHHHHhcCCCEEEEcCCc----------------hhHHHHHHHHHHHh
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKV-V-T-NLQEAVWDADIVINGLPS----------------TETKEVFEEISRYW 184 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~-t-~-dl~~av~~aDiIIiaVps----------------~~~~~vl~~i~~~l 184 (461)
.. ...+.. + + |+.+++++||+||++.-. ..++++.+.|.++.
T Consensus 47 -~~------------------~~~i~~~~~~~~~~~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~ 107 (312)
T TIGR01772 47 -PT------------------AASVKGFSGEEGLENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESC 107 (312)
T ss_pred -Cc------------------CceEEEecCCCchHHHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhC
Confidence 00 013443 2 2 345679999999997632 13556666666663
Q ss_pred hccCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCcE
Q 012547 185 KERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENI 228 (461)
Q Consensus 185 ~~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v 228 (461)
+ +.++|.++|..+.. ...+..++++..+.|..++
T Consensus 108 -p---~~iiivvsNPvDv~------~~i~t~~~~~~sg~p~~rV 141 (312)
T TIGR01772 108 -P---KAMILVITNPVNST------VPIAAEVLKKKGVYDPNKL 141 (312)
T ss_pred -C---CeEEEEecCchhhH------HHHHHHHHHHhcCCChHHE
Confidence 3 57888899877531 0113456667666654454
No 157
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.26 E-value=0.0036 Score=62.30 Aligned_cols=75 Identities=15% Similarity=0.100 Sum_probs=47.5
Q ss_pred CeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCC
Q 012547 147 PLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIE 226 (461)
Q Consensus 147 ~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~ 226 (461)
++.+++|+++...++|+||.++|+....+.+...... +..+|+.+.|+..+. .+.+.+.... .
T Consensus 55 gv~~~~d~~~l~~~~DvVIdfT~p~~~~~~~~~al~~------g~~vVigttg~~~e~---------~~~l~~aA~~--~ 117 (266)
T TIGR00036 55 GVPVTDDLEAVETDPDVLIDFTTPEGVLNHLKFALEH------GVRLVVGTTGFSEED---------KQELADLAEK--A 117 (266)
T ss_pred CceeeCCHHHhcCCCCEEEECCChHHHHHHHHHHHHC------CCCEEEECCCCCHHH---------HHHHHHHHhc--C
Confidence 3566788887645689999999998888877766542 445666666876541 1223333221 1
Q ss_pred cEEEEeCcchhH
Q 012547 227 NILYLGGPNIAS 238 (461)
Q Consensus 227 ~v~vlsGPn~a~ 238 (461)
.+.++.+|||+.
T Consensus 118 g~~v~~a~NfSl 129 (266)
T TIGR00036 118 GIAAVIAPNFSI 129 (266)
T ss_pred CccEEEECcccH
Confidence 245677888854
No 158
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.24 E-value=0.0026 Score=65.14 Aligned_cols=37 Identities=16% Similarity=0.337 Sum_probs=30.6
Q ss_pred eEEEECc-cHHHHHHHHHHHHhcCCCC--CCeeEEEEecCc
Q 012547 45 RIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPG 82 (461)
Q Consensus 45 kI~IIGa-GamG~alA~~La~~~G~~~--~~~~V~l~~r~~ 82 (461)
||+|+|| |.+|+.+|..|+.. |++. ...++.|+|+++
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~-~~~~~~~~~~l~L~Di~~ 41 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASG-ELFGDDQPVILHLLDIPP 41 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhC-CccCCCCceEEEEEecCC
Confidence 8999999 99999999999987 6543 123699999987
No 159
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=97.23 E-value=0.00075 Score=70.56 Aligned_cols=93 Identities=17% Similarity=0.231 Sum_probs=65.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.-++|+|||.|++|..+|..+..- | .+|.+|++.....+ .
T Consensus 115 ~gktvGIIG~G~IG~~va~~l~a~-G-----~~V~~~Dp~~~~~~-----------------------------~----- 154 (381)
T PRK00257 115 AERTYGVVGAGHVGGRLVRVLRGL-G-----WKVLVCDPPRQEAE-----------------------------G----- 154 (381)
T ss_pred CcCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEECCcccccc-----------------------------c-----
Confidence 347899999999999999999876 7 89999987532100 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-----hHHHHH-HHHHHHhhccCCCCEEEE
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-----ETKEVF-EEISRYWKERITVPVIIS 195 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~-----~~~~vl-~~i~~~l~~~~~~~iIIs 195 (461)
... ..++++.+++||+|++++|-. .+..++ ++....+++ ++++|.
T Consensus 155 -------------------------~~~-~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~---gailIN 205 (381)
T PRK00257 155 -------------------------DGD-FVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRP---GAWLIN 205 (381)
T ss_pred -------------------------Ccc-ccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCC---CeEEEE
Confidence 011 246788889999999999953 244544 234444666 788998
Q ss_pred EeecCccc
Q 012547 196 LAKGVEAE 203 (461)
Q Consensus 196 ~tkGi~~~ 203 (461)
++-|=..+
T Consensus 206 ~aRG~vVd 213 (381)
T PRK00257 206 ASRGAVVD 213 (381)
T ss_pred CCCCcccC
Confidence 88774443
No 160
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.22 E-value=0.0027 Score=55.40 Aligned_cols=41 Identities=24% Similarity=0.339 Sum_probs=30.5
Q ss_pred CHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 153 dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
+.+ .+.++|+||+|+|+....++...+. +. +..||.++.-+
T Consensus 60 ~~~-~~~~~Dvvf~a~~~~~~~~~~~~~~---~~---g~~ViD~s~~~ 100 (121)
T PF01118_consen 60 DPE-ELSDVDVVFLALPHGASKELAPKLL---KA---GIKVIDLSGDF 100 (121)
T ss_dssp SGH-HHTTESEEEE-SCHHHHHHHHHHHH---HT---TSEEEESSSTT
T ss_pred chh-HhhcCCEEEecCchhHHHHHHHHHh---hC---CcEEEeCCHHH
Confidence 444 4689999999999999999888873 44 56788777544
No 161
>PLN00203 glutamyl-tRNA reductase
Probab=97.21 E-value=0.00095 Score=72.46 Aligned_cols=54 Identities=17% Similarity=0.270 Sum_probs=42.2
Q ss_pred hHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 29 LDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 29 ~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
++..+..+|..+-...+|+|||+|.||.+++..|... |. .+|++++|+.+.++.
T Consensus 252 v~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~~-G~----~~V~V~nRs~era~~ 305 (519)
T PLN00203 252 VELALMKLPESSHASARVLVIGAGKMGKLLVKHLVSK-GC----TKMVVVNRSEERVAA 305 (519)
T ss_pred HHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHhC-CC----CeEEEEeCCHHHHHH
Confidence 4556677765334457899999999999999999987 71 479999999876654
No 162
>PRK05086 malate dehydrogenase; Provisional
Probab=97.20 E-value=0.0029 Score=64.50 Aligned_cols=37 Identities=14% Similarity=0.300 Sum_probs=29.2
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
|||+|||+ |.+|++++..+....+. .+++.++++++.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~---~~el~L~d~~~~ 38 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPA---GSELSLYDIAPV 38 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCC---ccEEEEEecCCC
Confidence 79999999 99999999988652121 168999998753
No 163
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.19 E-value=0.0013 Score=69.48 Aligned_cols=94 Identities=19% Similarity=0.278 Sum_probs=68.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.-++|+|||.|++|..+|..+..- | .+|..|++..... ..
T Consensus 150 ~gktvGIiG~G~IG~~vA~~~~~f-G-----m~V~~~d~~~~~~----------------------------~~------ 189 (409)
T PRK11790 150 RGKTLGIVGYGHIGTQLSVLAESL-G-----MRVYFYDIEDKLP----------------------------LG------ 189 (409)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEECCCcccc----------------------------cC------
Confidence 347899999999999999998765 7 8999998753200 00
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHH-HHHHHHhhccCCCCEEEEEeec
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF-EEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl-~~i~~~l~~~~~~~iIIs~tkG 199 (461)
......+++++++.||+|++.+|. ..++.++ ++....+++ ++++|.++-|
T Consensus 190 -------------------------~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~---ga~lIN~aRG 241 (409)
T PRK11790 190 -------------------------NARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKP---GAILINASRG 241 (409)
T ss_pred -------------------------CceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCC---CeEEEECCCC
Confidence 123345788999999999999995 4566666 334445666 6889988877
Q ss_pred Cccc
Q 012547 200 VEAE 203 (461)
Q Consensus 200 i~~~ 203 (461)
=..+
T Consensus 242 ~~vd 245 (409)
T PRK11790 242 TVVD 245 (409)
T ss_pred cccC
Confidence 5444
No 164
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.17 E-value=0.0021 Score=63.59 Aligned_cols=95 Identities=18% Similarity=0.227 Sum_probs=63.3
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeE-EEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
+|||+|+|+ |.||..++..+....+ .++ -+++++.+.... . ..
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~-----~elvav~d~~~~~~~~-------------------------~-~~---- 45 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAED-----LELVAAVDRPGSPLVG-------------------------Q-GA---- 45 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCC-----CEEEEEEecCCccccc-------------------------c-CC----
Confidence 489999998 9999999988876412 444 456766543211 0 00
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
.++...+|+++++.++|+||.++|+....+.+..... . +..+|..+.|+
T Consensus 46 -------------------------~~i~~~~dl~~ll~~~DvVid~t~p~~~~~~~~~al~---~---G~~vvigttG~ 94 (257)
T PRK00048 46 -------------------------LGVAITDDLEAVLADADVLIDFTTPEATLENLEFALE---H---GKPLVIGTTGF 94 (257)
T ss_pred -------------------------CCccccCCHHHhccCCCEEEECCCHHHHHHHHHHHHH---c---CCCEEEECCCC
Confidence 0234567888888889999999998888777766554 2 34455556677
Q ss_pred ccc
Q 012547 201 EAE 203 (461)
Q Consensus 201 ~~~ 203 (461)
..+
T Consensus 95 s~~ 97 (257)
T PRK00048 95 TEE 97 (257)
T ss_pred CHH
Confidence 654
No 165
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.16 E-value=0.0015 Score=66.77 Aligned_cols=94 Identities=19% Similarity=0.210 Sum_probs=62.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+..+++|||+|.+|.+.+..++...+ -.+|.+|+|++++++++.+ .+... + .
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~----~~~v~v~~r~~~~a~~~~~-----~~~~~------------~-~------ 177 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRD----IERVRVYSRTFEKAYAFAQ-----EIQSK------------F-N------ 177 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCC----ccEEEEECCCHHHHHHHHH-----HHHHh------------c-C------
Confidence 45689999999999988877654313 2689999999887664221 11100 0 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEE
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIIS 195 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs 195 (461)
..+...+|+++++.++|+|+.|||+.. .++. .++++ ++.|++
T Consensus 178 ------------------------~~~~~~~~~~~~~~~aDiVi~aT~s~~--p~i~---~~l~~---G~hV~~ 219 (325)
T PRK08618 178 ------------------------TEIYVVNSADEAIEEADIIVTVTNAKT--PVFS---EKLKK---GVHINA 219 (325)
T ss_pred ------------------------CcEEEeCCHHHHHhcCCEEEEccCCCC--cchH---HhcCC---CcEEEe
Confidence 023456788889999999999999873 3333 34565 565543
No 166
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.16 E-value=0.0012 Score=69.04 Aligned_cols=88 Identities=23% Similarity=0.282 Sum_probs=61.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
+|||.|||+|.+|++.|..||++ | ..+|++.+|+.++++++... .. ..+...
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~-~----d~~V~iAdRs~~~~~~i~~~--------~~----------~~v~~~----- 52 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQN-G----DGEVTIADRSKEKCARIAEL--------IG----------GKVEAL----- 52 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhC-C----CceEEEEeCCHHHHHHHHhh--------cc----------ccceeE-----
Confidence 58999999999999999999999 6 37999999998877753221 00 001100
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHH
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEI 180 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i 180 (461)
.+ .+.-...+.+++++.|+||.|.|+.+...+++..
T Consensus 53 --~v--------------------D~~d~~al~~li~~~d~VIn~~p~~~~~~i~ka~ 88 (389)
T COG1748 53 --QV--------------------DAADVDALVALIKDFDLVINAAPPFVDLTILKAC 88 (389)
T ss_pred --Ee--------------------cccChHHHHHHHhcCCEEEEeCCchhhHHHHHHH
Confidence 00 1111234667889999999999998776666443
No 167
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=97.16 E-value=0.0019 Score=60.66 Aligned_cols=98 Identities=19% Similarity=0.355 Sum_probs=68.1
Q ss_pred hhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHH-HHHhcCCCCCCe-eEEEEecCchhhhhhhhhhHHHHHhhhh
Q 012547 24 SLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAM-LQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSRE 101 (461)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~-La~~~G~~~~~~-~V~l~~r~~~~~~~~~~~~l~~~i~~~~ 101 (461)
..+.-+|+|+.++| ...+.++.|||+|++|.|++.. +.++.| . -|-++|.+++.+-.
T Consensus 67 nV~~L~~ff~~~Lg--~~~~tnviiVG~GnlG~All~Y~f~~~~~-----~~iv~~FDv~~~~VG~-------------- 125 (211)
T COG2344 67 NVKYLRDFFDDLLG--QDKTTNVIIVGVGNLGRALLNYNFSKKNG-----MKIVAAFDVDPDKVGT-------------- 125 (211)
T ss_pred cHHHHHHHHHHHhC--CCcceeEEEEccChHHHHHhcCcchhhcC-----ceEEEEecCCHHHhCc--------------
Confidence 35677899999995 4456899999999999999977 554424 3 35567777753211
Q ss_pred hhHHhhhhcccccchhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhc--CCCEEEEcCCchhHHHHHHH
Q 012547 102 DVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEE 179 (461)
Q Consensus 102 ~~~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~--~aDiIIiaVps~~~~~vl~~ 179 (461)
...++ +++-.++++.-++ +.|+.|+|||+..-.++++.
T Consensus 126 -----------~~~~v-----------------------------~V~~~d~le~~v~~~dv~iaiLtVPa~~AQ~vad~ 165 (211)
T COG2344 126 -----------KIGDV-----------------------------PVYDLDDLEKFVKKNDVEIAILTVPAEHAQEVADR 165 (211)
T ss_pred -----------ccCCe-----------------------------eeechHHHHHHHHhcCccEEEEEccHHHHHHHHHH
Confidence 01110 2333456666665 78999999999998888888
Q ss_pred HHH
Q 012547 180 ISR 182 (461)
Q Consensus 180 i~~ 182 (461)
|..
T Consensus 166 Lv~ 168 (211)
T COG2344 166 LVK 168 (211)
T ss_pred HHH
Confidence 764
No 168
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=97.16 E-value=0.00099 Score=69.57 Aligned_cols=93 Identities=24% Similarity=0.274 Sum_probs=65.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.-++|+|||.|++|+.+|..+..- | .+|..|++.... . ..
T Consensus 115 ~gktvGIIG~G~IG~~vA~~l~a~-G-----~~V~~~dp~~~~--~--------------------------~~------ 154 (378)
T PRK15438 115 HDRTVGIVGVGNVGRRLQARLEAL-G-----IKTLLCDPPRAD--R--------------------------GD------ 154 (378)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEECCcccc--c--------------------------cc------
Confidence 447999999999999999999866 7 899999864310 0 00
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh-----HHHHH-HHHHHHhhccCCCCEEEE
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-----TKEVF-EEISRYWKERITVPVIIS 195 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~-----~~~vl-~~i~~~l~~~~~~~iIIs 195 (461)
... ..++++.+++||+|++.+|-.. ...++ ++....+++ ++++|.
T Consensus 155 -------------------------~~~-~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~---gailIN 205 (378)
T PRK15438 155 -------------------------EGD-FRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKP---GAILIN 205 (378)
T ss_pred -------------------------ccc-cCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCC---CcEEEE
Confidence 001 2468888899999999998432 44444 334444566 789999
Q ss_pred EeecCccc
Q 012547 196 LAKGVEAE 203 (461)
Q Consensus 196 ~tkGi~~~ 203 (461)
++-|=..+
T Consensus 206 ~aRG~vVD 213 (378)
T PRK15438 206 ACRGAVVD 213 (378)
T ss_pred CCCchhcC
Confidence 88875444
No 169
>PLN00106 malate dehydrogenase
Probab=97.16 E-value=0.0059 Score=62.58 Aligned_cols=47 Identities=15% Similarity=0.315 Sum_probs=37.4
Q ss_pred HHHhhcCCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 32 LRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 32 ~~~~~~~~~~~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
||.---+..+.+.||+|||+ |.+|+.+|..|+.. +.. .++.++|+++
T Consensus 7 ~~~~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~-~~~---~el~L~Di~~ 54 (323)
T PLN00106 7 LRACRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMN-PLV---SELHLYDIAN 54 (323)
T ss_pred hhccccccCCCCCEEEEECCCCHHHHHHHHHHHhC-CCC---CEEEEEecCC
Confidence 44444556667789999999 99999999999977 532 4899999977
No 170
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.14 E-value=0.0019 Score=65.30 Aligned_cols=37 Identities=16% Similarity=0.233 Sum_probs=32.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
...|++|||+|.+|.+++..|... | .+|++++|+.+.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~-G-----a~V~v~~r~~~~ 187 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL-G-----ANVTVGARKSAH 187 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-C-----CEEEEEECCHHH
Confidence 347999999999999999999987 7 899999999754
No 171
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.13 E-value=0.0016 Score=66.67 Aligned_cols=77 Identities=22% Similarity=0.259 Sum_probs=55.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+..+++|||+|.+|.+.+..+... - +..+|.+|+|+.++++.+.+ .+.+ + +
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~-~---~~~~v~V~~r~~~~~~~~~~-----~~~~-------------~--g----- 177 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRV-F---DLEEVSVYCRTPSTREKFAL-----RASD-------------Y--E----- 177 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc-C---CCCEEEEECCCHHHHHHHHH-----HHHh-------------h--C-----
Confidence 457899999999999977776543 1 12789999999987654221 1100 0 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST 171 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~ 171 (461)
..+...+|.++++++||+|+.|||+.
T Consensus 178 ------------------------~~v~~~~~~~eav~~aDiVitaT~s~ 203 (325)
T TIGR02371 178 ------------------------VPVRAATDPREAVEGCDILVTTTPSR 203 (325)
T ss_pred ------------------------CcEEEeCCHHHHhccCCEEEEecCCC
Confidence 03556789999999999999999985
No 172
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=97.10 E-value=0.0016 Score=66.64 Aligned_cols=97 Identities=21% Similarity=0.191 Sum_probs=69.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.-++++|||.|.+|+.+|..+..- | .+|..|++....-.. ..
T Consensus 141 ~gkTvGIiG~G~IG~~va~~l~af-g-----m~v~~~d~~~~~~~~-------------------------~~------- 182 (324)
T COG0111 141 AGKTVGIIGLGRIGRAVAKRLKAF-G-----MKVIGYDPYSPRERA-------------------------GV------- 182 (324)
T ss_pred cCCEEEEECCCHHHHHHHHHHHhC-C-----CeEEEECCCCchhhh-------------------------cc-------
Confidence 347899999999999999999866 7 899999984321000 00
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHHH-HHHHHhhccCCCCEEEEEeec
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFE-EISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl~-~i~~~l~~~~~~~iIIs~tkG 199 (461)
.......++++.++.||+|.+.+|- ..++.++. +....+++ ++++|.++-|
T Consensus 183 ------------------------~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~---gailIN~aRG 235 (324)
T COG0111 183 ------------------------DGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKP---GAILINAARG 235 (324)
T ss_pred ------------------------ccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCC---CeEEEECCCc
Confidence 0233456789999999999999994 56777663 23334565 6889988888
Q ss_pred Cccc
Q 012547 200 VEAE 203 (461)
Q Consensus 200 i~~~ 203 (461)
-..+
T Consensus 236 ~vVd 239 (324)
T COG0111 236 GVVD 239 (324)
T ss_pred ceec
Confidence 5544
No 173
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.09 E-value=0.0018 Score=66.45 Aligned_cols=78 Identities=27% Similarity=0.383 Sum_probs=56.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+.++|+|||+|.+|.+.+..++...+ -.+|.+|+|+.++++++.++ +++ .+ +
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~----~~~V~v~~R~~~~a~~l~~~-----~~~-------------~~-g----- 182 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRP----IREVRVWARDAAKAEAYAAD-----LRA-------------EL-G----- 182 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCC----CCEEEEEcCCHHHHHHHHHH-----Hhh-------------cc-C-----
Confidence 45799999999999998888875313 16899999999877653211 110 00 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST 171 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~ 171 (461)
..+...+|+++++.++|+|+.|+|+.
T Consensus 183 ------------------------~~v~~~~d~~~al~~aDiVi~aT~s~ 208 (330)
T PRK08291 183 ------------------------IPVTVARDVHEAVAGADIIVTTTPSE 208 (330)
T ss_pred ------------------------ceEEEeCCHHHHHccCCEEEEeeCCC
Confidence 02455688899999999999999985
No 174
>PLN02928 oxidoreductase family protein
Probab=97.09 E-value=0.0015 Score=67.58 Aligned_cols=108 Identities=21% Similarity=0.219 Sum_probs=67.4
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
-++|+|||.|.+|..+|..+..- | .+|..|+|+...... .. ..++.-
T Consensus 159 gktvGIiG~G~IG~~vA~~l~af-G-----~~V~~~dr~~~~~~~-----------~~-----------~~~~~~----- 205 (347)
T PLN02928 159 GKTVFILGYGAIGIELAKRLRPF-G-----VKLLATRRSWTSEPE-----------DG-----------LLIPNG----- 205 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHhhC-C-----CEEEEECCCCChhhh-----------hh-----------hccccc-----
Confidence 37999999999999999999866 7 899999987421110 00 000000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHH-HHHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF-EEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl-~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
.. +. ..+ ......++++++++||+|++++|. ...+.++ ++....+++ ++++|.+.-|=
T Consensus 206 --~~------~~-----~~~----~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~---ga~lINvaRG~ 265 (347)
T PLN02928 206 --DV------DD-----LVD----EKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKK---GALLVNIARGG 265 (347)
T ss_pred --cc------cc-----ccc----ccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCC---CeEEEECCCcc
Confidence 00 00 000 001235788999999999999994 4455555 233444566 68899888774
Q ss_pred ccc
Q 012547 201 EAE 203 (461)
Q Consensus 201 ~~~ 203 (461)
..+
T Consensus 266 lVd 268 (347)
T PLN02928 266 LLD 268 (347)
T ss_pred ccC
Confidence 443
No 175
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.09 E-value=0.0035 Score=63.03 Aligned_cols=67 Identities=19% Similarity=0.233 Sum_probs=47.6
Q ss_pred cCcccccccchhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
.+|-++-.|-.-.-=+.-|+... .+....+|+|||+|..|.+++..|+.. |. .+|++++|+.++++.
T Consensus 100 ~~g~l~G~NTD~~G~~~~l~~~~--~~~~~k~vlIlGaGGaaraia~aL~~~-G~----~~I~I~nR~~~ka~~ 166 (284)
T PRK12549 100 RDGRRIGHNTDWSGFAESFRRGL--PDASLERVVQLGAGGAGAAVAHALLTL-GV----ERLTIFDVDPARAAA 166 (284)
T ss_pred cCCEEEEEcCCHHHHHHHHHhhc--cCccCCEEEEECCcHHHHHHHHHHHHc-CC----CEEEEECCCHHHHHH
Confidence 46666655655444444454322 223347899999999999999999988 71 479999999877664
No 176
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=97.05 E-value=0.0086 Score=63.80 Aligned_cols=45 Identities=11% Similarity=0.122 Sum_probs=34.6
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCC----eeEEEEecCchhhhh
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDK----VLIRIWRRPGRSVDR 87 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~----~~V~l~~r~~~~~~~ 87 (461)
.+.||+|||+ |++|+++|..|+.. +.|.++ .++.+++++++.++.
T Consensus 99 ~~~KV~IIGAaG~VG~~~A~~L~~~-~v~g~~~~i~~eLvliD~~~~~a~G 148 (444)
T PLN00112 99 KLINVAVSGAAGMISNHLLFKLASG-EVFGPDQPIALKLLGSERSKQALEG 148 (444)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhc-ccccCCCCcccEEEEEcCCcchhHH
Confidence 4579999999 99999999999876 433311 268889998877653
No 177
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.04 E-value=0.0023 Score=67.76 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=34.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
|+|.|+|+|.+|..+|..|.+. | ++|.+++++++.++.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~-g-----~~v~vid~~~~~~~~ 38 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE-N-----NDVTVIDTDEERLRR 38 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-C-----CcEEEEECCHHHHHH
Confidence 7899999999999999999988 7 899999999876654
No 178
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.04 E-value=0.0049 Score=63.16 Aligned_cols=39 Identities=21% Similarity=0.445 Sum_probs=31.6
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCC--CCeeEEEEecCc
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~--~~~~V~l~~r~~ 82 (461)
+.||+|+|| |.+|++++..|+.. +.+. ...+|.++++++
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~-~~~~~~~~~el~L~D~~~ 43 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKG-DVFGPDQPVILHLLDIPP 43 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC-cccCCCCCcEEEEEEcCC
Confidence 579999999 99999999999886 5432 124899999965
No 179
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=97.04 E-value=0.0021 Score=65.41 Aligned_cols=93 Identities=17% Similarity=0.268 Sum_probs=65.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.-++|+|||.|++|..+|..+.-- | -+|..|+|.....+ .
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~f-g-----m~V~~~d~~~~~~~----------------------------~------ 183 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAF-G-----AKVVYYSTSGKNKN----------------------------E------ 183 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhc-C-----CEEEEECCCccccc----------------------------c------
Confidence 347899999999999999988644 6 78999987532100 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHH-HHHHHHhhccCCCCEEEEEeec
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF-EEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl-~~i~~~l~~~~~~~iIIs~tkG 199 (461)
.+. ..++++.++.||+|++++|- ..++.++ ++....+++ ++++|.+.-|
T Consensus 184 -------------------------~~~-~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~---~a~lIN~aRG 234 (311)
T PRK08410 184 -------------------------EYE-RVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKD---GAILINVGRG 234 (311)
T ss_pred -------------------------Cce-eecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCC---CeEEEECCCc
Confidence 111 23688899999999999994 4555555 233444666 7899988887
Q ss_pred Cccc
Q 012547 200 VEAE 203 (461)
Q Consensus 200 i~~~ 203 (461)
=..+
T Consensus 235 ~vVD 238 (311)
T PRK08410 235 GIVN 238 (311)
T ss_pred cccC
Confidence 5444
No 180
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.01 E-value=0.0018 Score=65.46 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=29.9
Q ss_pred CCceEEEECcc-HHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 42 DPLRIVGVGAG-AWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 42 ~~mkI~IIGaG-amG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
.-++|+|||.| .||..||..|.++ | ++|++|.++
T Consensus 158 ~Gk~V~vIG~s~ivG~PmA~~L~~~-g-----atVtv~~~~ 192 (301)
T PRK14194 158 TGKHAVVIGRSNIVGKPMAALLLQA-H-----CSVTVVHSR 192 (301)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHC-C-----CEEEEECCC
Confidence 34799999996 9999999999998 8 999999654
No 181
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=97.00 E-value=0.0069 Score=62.06 Aligned_cols=38 Identities=24% Similarity=0.444 Sum_probs=30.8
Q ss_pred eEEEECc-cHHHHHHHHHHHHhcCCCC--CCeeEEEEecCch
Q 012547 45 RIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPGR 83 (461)
Q Consensus 45 kI~IIGa-GamG~alA~~La~~~G~~~--~~~~V~l~~r~~~ 83 (461)
||+|||+ |.+|+++|..|+.. |.+. .+.++.|+|++++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~-~~~~~~~e~el~LiD~~~~ 41 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG-RMLGKDQPIILHLLDIPPA 41 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc-cccCCCCccEEEEEecCCc
Confidence 6999999 99999999999987 6542 2247999999654
No 182
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.00 E-value=0.0049 Score=61.31 Aligned_cols=46 Identities=20% Similarity=0.180 Sum_probs=31.0
Q ss_pred eEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 148 LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 148 i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
+.+++|+++...+.|+|+.|+|+..+.+...+.. .. +..+++...|
T Consensus 49 ~~~~~d~~~l~~~~DvVve~t~~~~~~e~~~~aL---~a---Gk~Vvi~s~~ 94 (265)
T PRK13303 49 VRVVSSVDALPQRPDLVVECAGHAALKEHVVPIL---KA---GIDCAVISVG 94 (265)
T ss_pred CeeeCCHHHhccCCCEEEECCCHHHHHHHHHHHH---Hc---CCCEEEeChH
Confidence 3456777765356899999999988877666654 33 3445555544
No 183
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.99 E-value=0.0027 Score=61.64 Aligned_cols=88 Identities=25% Similarity=0.293 Sum_probs=61.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|+|+|||+|.+|..+|..|++. | |+|.+++++++.+++...+ .. .... +. ++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~-g-----~~Vv~Id~d~~~~~~~~~~--------~~----------~~~~-v~---gd 52 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE-G-----HNVVLIDRDEERVEEFLAD--------EL----------DTHV-VI---GD 52 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC-C-----CceEEEEcCHHHHHHHhhh--------hc----------ceEE-EE---ec
Confidence 7999999999999999999999 8 9999999999876541110 00 0000 00 00
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHH-hcCCCEEEEcCCchhHHHHHHHHHHH
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEA-VWDADIVINGLPSTETKEVFEEISRY 183 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~a-v~~aDiIIiaVps~~~~~vl~~i~~~ 183 (461)
-.-.+-+++| +.++|+++.++..+....++-.++..
T Consensus 53 ------------------------~t~~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~ 89 (225)
T COG0569 53 ------------------------ATDEDVLEEAGIDDADAVVAATGNDEVNSVLALLALK 89 (225)
T ss_pred ------------------------CCCHHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHH
Confidence 0001123344 78899999999999999999888754
No 184
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=96.98 E-value=0.0048 Score=58.81 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=35.2
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 40 ~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
+-..|+|+|+|.|+||..+|..|.+. | ++|.+++++++.++
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~-G-----~~Vvv~D~~~~~~~ 65 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEE-G-----AKLIVADINEEAVA 65 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEcCCHHHHH
Confidence 33447999999999999999999998 8 99999999876544
No 185
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=96.97 E-value=0.011 Score=56.47 Aligned_cols=34 Identities=18% Similarity=0.146 Sum_probs=30.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
..||+|+|+|.+|+.+|..|++. |. .+++++|++
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~-Gv----g~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARA-GI----GKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHc-CC----CEEEEECCC
Confidence 36899999999999999999999 82 379999998
No 186
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=96.94 E-value=0.0032 Score=60.43 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=37.9
Q ss_pred hhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHh-cCCCCCCeeE-EEEecCch
Q 012547 24 SLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDS-YGYLRDKVLI-RIWRRPGR 83 (461)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~-~G~~~~~~~V-~l~~r~~~ 83 (461)
.+.+-++++|+.+|.. ...+|+|||+|.+|.+++..+... .| .++ -+++++++
T Consensus 67 ~v~~l~~~~~~~l~~~--~~~rV~IIGaG~iG~~l~~~~~~~~~g-----~~ivgv~D~d~~ 121 (213)
T PRK05472 67 NVEELLEFIEKILGLD--RTWNVALVGAGNLGRALLNYNGFEKRG-----FKIVAAFDVDPE 121 (213)
T ss_pred eHHHHHHHHHHHhCCC--CCcEEEEECCCHHHHHHHHhhhcccCC-----cEEEEEEECChh
Confidence 4566788899999776 457899999999999999864321 14 444 45676654
No 187
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.92 E-value=0.0063 Score=64.38 Aligned_cols=56 Identities=20% Similarity=0.377 Sum_probs=49.4
Q ss_pred HHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 26 EERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
++.+++|++.++.....+++|.|+|+|.+|..++..|.+. | ++|++++++++.++.
T Consensus 214 ~~~l~~~~~~~~~~~~~~~~iiIiG~G~~g~~l~~~L~~~-~-----~~v~vid~~~~~~~~ 269 (453)
T PRK09496 214 REHIRAVMSEFGRLEKPVKRVMIVGGGNIGYYLAKLLEKE-G-----YSVKLIERDPERAEE 269 (453)
T ss_pred HHHHHHHHHHhCccCCCCCEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEECCHHHHHH
Confidence 4678889999988877789999999999999999999988 7 899999999876654
No 188
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.91 E-value=0.0037 Score=66.28 Aligned_cols=40 Identities=20% Similarity=0.341 Sum_probs=33.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
..++|+|||+|.||..++..|... | ..+|++++|+.+.++
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~-G----~~~V~v~~r~~~ra~ 220 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEK-G----VRKITVANRTLERAE 220 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHC-C----CCeEEEEeCCHHHHH
Confidence 347899999999999999999877 7 138999999986554
No 189
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.91 E-value=0.0028 Score=67.05 Aligned_cols=52 Identities=13% Similarity=0.181 Sum_probs=40.6
Q ss_pred hHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 29 LDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 29 ~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
++..+..++...+ .||.|||+|.||.+++..|+.. |. .++++++|+.++++.
T Consensus 169 v~la~~~~~~l~~--kkvlviGaG~~a~~va~~L~~~-g~----~~I~V~nRt~~ra~~ 220 (414)
T PRK13940 169 ITLAKRQLDNISS--KNVLIIGAGQTGELLFRHVTAL-AP----KQIMLANRTIEKAQK 220 (414)
T ss_pred HHHHHHHhcCccC--CEEEEEcCcHHHHHHHHHHHHc-CC----CEEEEECCCHHHHHH
Confidence 3455666754443 6899999999999999999988 72 589999999876553
No 190
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=96.88 E-value=0.0067 Score=64.43 Aligned_cols=110 Identities=15% Similarity=0.190 Sum_probs=68.9
Q ss_pred ceEEEECccHH-HHHHHHHHHHhcC-CCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 44 LRIVGVGAGAW-GSVFTAMLQDSYG-YLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 44 mkI~IIGaGam-G~alA~~La~~~G-~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
|||+|||+|+. .--+...|++. . .+. ..+|.++|.++++++.+. .+.+.+ ....
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~-~~~l~-~~ei~L~Did~~Rl~~v~--~l~~~~----------------~~~~---- 56 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKT-PEELP-ISEVTLYDIDEERLDIIL--TIAKRY----------------VEEV---- 56 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcC-hhhCC-CCEEEEEcCCHHHHHHHH--HHHHHH----------------HHhh----
Confidence 79999999983 33344445543 1 121 268999999998766421 111111 1100
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch------------------------------
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST------------------------------ 171 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~------------------------------ 171 (461)
+. . -.+..|+|.++|+++||+||..+-..
T Consensus 57 g~-~--------------------~~v~~ttD~~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~ 115 (425)
T cd05197 57 GA-D--------------------IKFEKTMDLEDAIIDADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFS 115 (425)
T ss_pred CC-C--------------------eEEEEeCCHHHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhh
Confidence 00 0 14788999999999999999987431
Q ss_pred ------hHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 172 ------ETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 172 ------~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
.+.++++++.++.. ++.+|..+|.++.
T Consensus 116 alrni~ii~~i~~~i~~~~P----~a~lin~TNP~di 148 (425)
T cd05197 116 GLRQIPYVLDIARKXEKLSP----DAWYLNFTNPAGE 148 (425)
T ss_pred hhhhHHHHHHHHHHHHHhCC----CcEEEecCChHHH
Confidence 24566666666553 5788888887654
No 191
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=96.86 E-value=0.0075 Score=59.93 Aligned_cols=66 Identities=18% Similarity=0.148 Sum_probs=45.0
Q ss_pred cCcccccccchhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
.+|-++-.|-.-.--+.-|++. +. ....+++.|+|+|.+|.+++..|++. | .+|++++|+.++++.
T Consensus 90 ~~g~l~g~NTD~~G~~~~l~~~-~~-~~~~k~vliiGaGg~g~aia~~L~~~-g-----~~v~v~~R~~~~~~~ 155 (270)
T TIGR00507 90 EDGKLVGYNTDGIGLVSDLERL-IP-LRPNQRVLIIGAGGAARAVALPLLKA-D-----CNVIIANRTVSKAEE 155 (270)
T ss_pred eCCEEEEEcCCHHHHHHHHHhc-CC-CccCCEEEEEcCcHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHH
Confidence 3454544454433333344442 11 22346899999999999999999988 7 899999999876553
No 192
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=96.86 E-value=0.0062 Score=62.85 Aligned_cols=40 Identities=18% Similarity=0.231 Sum_probs=31.5
Q ss_pred HhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 157 av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
+..++|+||+|+|.....++...+.. . +..||.++..+-.
T Consensus 65 ~~~~vD~Vf~alP~~~~~~~v~~a~~---a---G~~VID~S~~fR~ 104 (343)
T PRK00436 65 ILAGADVVFLALPHGVSMDLAPQLLE---A---GVKVIDLSADFRL 104 (343)
T ss_pred HhcCCCEEEECCCcHHHHHHHHHHHh---C---CCEEEECCcccCC
Confidence 45689999999999988888877654 2 5789998876654
No 193
>PLN02306 hydroxypyruvate reductase
Probab=96.83 E-value=0.0045 Score=64.92 Aligned_cols=112 Identities=16% Similarity=0.248 Sum_probs=68.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
-++|+|||.|.+|..+|..++...| .+|..|++....... . ... .+-....
T Consensus 165 gktvGIiG~G~IG~~vA~~l~~~fG-----m~V~~~d~~~~~~~~----~---~~~-------------~~~~~l~---- 215 (386)
T PLN02306 165 GQTVGVIGAGRIGSAYARMMVEGFK-----MNLIYYDLYQSTRLE----K---FVT-------------AYGQFLK---- 215 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC-----CEEEEECCCCchhhh----h---hhh-------------hhccccc----
Confidence 4789999999999999999864436 789999987531100 0 000 0000000
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHHH-HHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFE-EISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl~-~i~~~l~~~~~~~iIIs~tkGi 200 (461)
.. +. ....+....+++++++.||+|++++|- ..++.++. +....+++ ++++|.+.-|=
T Consensus 216 --~~--------~~-------~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~---ga~lIN~aRG~ 275 (386)
T PLN02306 216 --AN--------GE-------QPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKK---EAVLVNASRGP 275 (386)
T ss_pred --cc--------cc-------ccccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCC---CeEEEECCCcc
Confidence 00 00 000122346899999999999999994 46666663 34445666 78899888774
Q ss_pred ccc
Q 012547 201 EAE 203 (461)
Q Consensus 201 ~~~ 203 (461)
..+
T Consensus 276 lVD 278 (386)
T PLN02306 276 VID 278 (386)
T ss_pred ccC
Confidence 333
No 194
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=96.80 E-value=0.015 Score=61.95 Aligned_cols=111 Identities=16% Similarity=0.152 Sum_probs=67.4
Q ss_pred ceEEEECccHH-HHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 44 LRIVGVGAGAW-GSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 44 mkI~IIGaGam-G~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
|||+|||+|+. +--+...|+.. -.-.+..+|.|+|.++++++.+.. + .+. +.... +
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~-~~~l~~~ei~L~DId~~rl~~v~~--l---~~~-------------~~~~~----g 57 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDR-KEDFPLRELVLYDIDAERQEKVAE--A---VKI-------------LFKEN----Y 57 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhC-cccCCCCEEEEECCCHHHHHHHHH--H---HHH-------------HHHhh----C
Confidence 79999999984 11233334433 100112689999999987765221 1 110 11100 0
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch-------------------------------
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST------------------------------- 171 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~------------------------------- 171 (461)
. . -.+..|+|.++|+++||+||..+-..
T Consensus 58 ~-~--------------------~~v~~Ttdr~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~a 116 (437)
T cd05298 58 P-E--------------------IKFVYTTDPEEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYG 116 (437)
T ss_pred C-C--------------------eEEEEECCHHHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHH
Confidence 0 0 14788999999999999999987432
Q ss_pred -----hHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 172 -----ETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 172 -----~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
.+.++++++.++.. ++.+|..+|.+..
T Consensus 117 lRtip~~~~i~~~i~~~~p----da~lin~tNP~~~ 148 (437)
T cd05298 117 LRSIGPMIELIDDIEKYSP----DAWILNYSNPAAI 148 (437)
T ss_pred HhhHHHHHHHHHHHHHHCC----CeEEEEecCcHHH
Confidence 34555566666543 5788888877654
No 195
>PRK07589 ornithine cyclodeaminase; Validated
Probab=96.80 E-value=0.0054 Score=63.39 Aligned_cols=95 Identities=15% Similarity=0.136 Sum_probs=63.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+..+++|||+|..+..-...++.-.. -.+|++|+|++++++++.+ .++. .+
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr~----i~~V~v~~r~~~~a~~~~~-----~~~~---------------~~----- 178 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALLG----IEEIRLYDIDPAATAKLAR-----NLAG---------------PG----- 178 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhCC----ceEEEEEeCCHHHHHHHHH-----HHHh---------------cC-----
Confidence 45789999999999888777664311 2799999999987664221 1100 00
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEE
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVII 194 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iII 194 (461)
.++.+.++.++++.+||+|+.||++.....+++. .++++ ++.|.
T Consensus 179 ------------------------~~v~~~~~~~~av~~ADIIvtaT~S~~~~Pvl~~--~~lkp---G~hV~ 222 (346)
T PRK07589 179 ------------------------LRIVACRSVAEAVEGADIITTVTADKTNATILTD--DMVEP---GMHIN 222 (346)
T ss_pred ------------------------CcEEEeCCHHHHHhcCCEEEEecCCCCCCceecH--HHcCC---CcEEE
Confidence 1356678999999999999999987543333322 35566 56543
No 196
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=96.77 E-value=0.012 Score=62.30 Aligned_cols=81 Identities=17% Similarity=0.204 Sum_probs=49.4
Q ss_pred ceEEEECccHHHH-HHHHHHHHhcCCCCCCeeEEEEecC-chhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 44 LRIVGVGAGAWGS-VFTAMLQDSYGYLRDKVLIRIWRRP-GRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 44 mkI~IIGaGamG~-alA~~La~~~G~~~~~~~V~l~~r~-~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
|||+|||+|+.-+ .+...|+...-.+. ..+|.++|.+ +++++.+.. +.+. +....
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~-~~ei~L~Did~~~rl~~v~~-----~~~~-------------~~~~~---- 57 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELP-VTELVLVDIDEEEKLEIVGA-----LAKR-------------MVKKA---- 57 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCC-CCEEEEecCChHHHHHHHHH-----HHHH-------------HHHhh----
Confidence 7999999999643 23344554311011 2689999999 676654211 1110 01100
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcC
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL 168 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaV 168 (461)
+. . ..+..|+|.++|+.+||+||.++
T Consensus 58 ~~-~--------------------~~v~~t~d~~~al~gadfVi~~~ 83 (419)
T cd05296 58 GL-P--------------------IKVHLTTDRREALEGADFVFTQI 83 (419)
T ss_pred CC-C--------------------eEEEEeCCHHHHhCCCCEEEEEE
Confidence 00 0 14788999999999999999987
No 197
>PRK07340 ornithine cyclodeaminase; Validated
Probab=96.75 E-value=0.0065 Score=61.65 Aligned_cols=77 Identities=13% Similarity=0.082 Sum_probs=55.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+..+++|||+|.+|...+..++...+ ..+|.+|+|++++++++.+ .+.. . +
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~----~~~v~v~~r~~~~a~~~a~-----~~~~--------------~-~----- 174 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLP----VRRVWVRGRTAASAAAFCA-----HARA--------------L-G----- 174 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCC----CCEEEEEcCCHHHHHHHHH-----HHHh--------------c-C-----
Confidence 45789999999999999999875313 1589999999887664221 1100 0 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE 172 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~ 172 (461)
+ .+. ..+.++++.++|+||.|||+..
T Consensus 175 ----~--------------------~~~-~~~~~~av~~aDiVitaT~s~~ 200 (304)
T PRK07340 175 ----P--------------------TAE-PLDGEAIPEAVDLVVTATTSRT 200 (304)
T ss_pred ----C--------------------eeE-ECCHHHHhhcCCEEEEccCCCC
Confidence 0 122 4778888999999999999874
No 198
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=96.74 E-value=0.0046 Score=63.34 Aligned_cols=79 Identities=23% Similarity=0.258 Sum_probs=56.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+..+++|||+|.+|.+.+..|+...+ -.+|++|+|+.++++++.+ .+.. .+ +
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~----i~~v~V~~R~~~~a~~~a~-----~~~~-------------~~-g----- 179 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRD----IRSARIWARDSAKAEALAL-----QLSS-------------LL-G----- 179 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCC----ccEEEEECCCHHHHHHHHH-----HHHh-------------hc-C-----
Confidence 44689999999999999999874313 1579999999987664221 1110 00 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE 172 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~ 172 (461)
..+...+|+++++.+||+|+.|||+..
T Consensus 180 ------------------------~~v~~~~~~~~av~~aDiVvtaT~s~~ 206 (326)
T TIGR02992 180 ------------------------IDVTAATDPRAAMSGADIIVTTTPSET 206 (326)
T ss_pred ------------------------ceEEEeCCHHHHhccCCEEEEecCCCC
Confidence 024456888999999999999999853
No 199
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=96.73 E-value=0.0051 Score=63.11 Aligned_cols=79 Identities=29% Similarity=0.337 Sum_probs=58.2
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+...++|||+|..+..-...+..-.+ -.+|.+|+|+++..++... .+... +
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v~~----~~~I~i~~r~~~~~e~~a~-----~l~~~--------------------~ 179 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAVRD----IREIRVYSRDPEAAEAFAA-----RLRKR--------------------G 179 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhhCC----ccEEEEEcCCHHHHHHHHH-----HHHhh--------------------c
Confidence 44679999999999999888875422 2689999999987764211 11100 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE 172 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~ 172 (461)
+ ..+...++.++++++||+|+-|||+..
T Consensus 180 ~-----------------------~~v~a~~s~~~av~~aDiIvt~T~s~~ 207 (330)
T COG2423 180 G-----------------------EAVGAADSAEEAVEGADIVVTATPSTE 207 (330)
T ss_pred C-----------------------ccceeccCHHHHhhcCCEEEEecCCCC
Confidence 0 135678899999999999999999987
No 200
>PTZ00325 malate dehydrogenase; Provisional
Probab=96.72 E-value=0.011 Score=60.58 Aligned_cols=36 Identities=14% Similarity=0.329 Sum_probs=29.8
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
.+.||+|||+ |.+|+.+|..|+.. +.. .++.|+|++
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~-~~~---~elvL~Di~ 43 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQN-PHV---SELSLYDIV 43 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcC-CCC---CEEEEEecC
Confidence 4569999999 99999999999865 421 589999993
No 201
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=96.71 E-value=0.0061 Score=62.41 Aligned_cols=97 Identities=19% Similarity=0.188 Sum_probs=65.8
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.-++++|||.|++|..+|..+....| -+|..|++...... ...
T Consensus 144 ~gktvGIiG~G~IG~~va~~l~~~fg-----m~V~~~~~~~~~~~---------------------------~~~----- 186 (323)
T PRK15409 144 HHKTLGIVGMGRIGMALAQRAHFGFN-----MPILYNARRHHKEA---------------------------EER----- 186 (323)
T ss_pred CCCEEEEEcccHHHHHHHHHHHhcCC-----CEEEEECCCCchhh---------------------------HHh-----
Confidence 34799999999999999999862325 68888887642100 000
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHH-HHHHHHhhccCCCCEEEEEeec
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF-EEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl-~~i~~~l~~~~~~~iIIs~tkG 199 (461)
..+.. .+++++++.||+|++++|- ..++.++ ++....+++ ++++|.+.-|
T Consensus 187 ------------------------~~~~~-~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~---ga~lIN~aRG 238 (323)
T PRK15409 187 ------------------------FNARY-CDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKS---SAIFINAGRG 238 (323)
T ss_pred ------------------------cCcEe-cCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCC---CeEEEECCCc
Confidence 01222 3788999999999999994 4566666 234445566 7889988877
Q ss_pred Cccc
Q 012547 200 VEAE 203 (461)
Q Consensus 200 i~~~ 203 (461)
=..+
T Consensus 239 ~vVd 242 (323)
T PRK15409 239 PVVD 242 (323)
T ss_pred cccC
Confidence 4443
No 202
>PRK06487 glycerate dehydrogenase; Provisional
Probab=96.69 E-value=0.005 Score=62.85 Aligned_cols=90 Identities=20% Similarity=0.225 Sum_probs=64.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
-++|+|||.|.+|..+|..+.-- | -+|..|+|.... ..
T Consensus 148 gktvgIiG~G~IG~~vA~~l~~f-g-----m~V~~~~~~~~~---------------------------~~--------- 185 (317)
T PRK06487 148 GKTLGLLGHGELGGAVARLAEAF-G-----MRVLIGQLPGRP---------------------------AR--------- 185 (317)
T ss_pred CCEEEEECCCHHHHHHHHHHhhC-C-----CEEEEECCCCCc---------------------------cc---------
Confidence 36899999999999999998744 6 789888775310 00
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHHH-HHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFE-EISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl~-~i~~~l~~~~~~~iIIs~tkGi 200 (461)
.. ..+++++++.||+|++++|- ..++.++. +....+++ ++++|.+.-|=
T Consensus 186 -------------------------~~-~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~---ga~lIN~aRG~ 236 (317)
T PRK06487 186 -------------------------PD-RLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKP---GALLINTARGG 236 (317)
T ss_pred -------------------------cc-ccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCC---CeEEEECCCcc
Confidence 00 12578889999999999994 46666662 33444566 78899888774
Q ss_pred ccc
Q 012547 201 EAE 203 (461)
Q Consensus 201 ~~~ 203 (461)
..+
T Consensus 237 vVd 239 (317)
T PRK06487 237 LVD 239 (317)
T ss_pred ccC
Confidence 443
No 203
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=96.67 E-value=0.0073 Score=61.77 Aligned_cols=104 Identities=16% Similarity=0.201 Sum_probs=74.7
Q ss_pred CCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchh
Q 012547 38 KAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV 117 (461)
Q Consensus 38 ~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~ 117 (461)
|.....+.|+.||.+.||.-++...+++ | +.|..|+|...++++.-+ |+. +-.
T Consensus 1 m~q~~~~digLiGLaVMGqnLiLN~~d~-G-----f~v~~yNRT~skvD~fla-------nea-----------k~~--- 53 (487)
T KOG2653|consen 1 MSQTPKADIGLIGLAVMGQNLILNIADK-G-----FTVCAYNRTTSKVDEFLA-------NEA-----------KGT--- 53 (487)
T ss_pred CCCccccchhhhhHhhhhhhhhhccccc-C-----ceEEEeccchHhHHHHHH-------Hhh-----------cCC---
Confidence 3445568999999999999999999999 8 899999999988875211 110 000
Q ss_pred hhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHH---HhcCCCEEEEcCCc-hhHHHHHHHHHHHhhccCCCCEE
Q 012547 118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQE---AVWDADIVINGLPS-TETKEVFEEISRYWKERITVPVI 193 (461)
Q Consensus 118 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~---av~~aDiIIiaVps-~~~~~vl~~i~~~l~~~~~~~iI 193 (461)
++.-..++++ -++..-.|++-|++ ..+..++++|.|++.+ +.+|
T Consensus 54 -----------------------------~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~~I~~L~p~Lek---gDiI 101 (487)
T KOG2653|consen 54 -----------------------------KIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQFIEELVPYLEK---GDII 101 (487)
T ss_pred -----------------------------cccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHHHHHHHHhhcCC---CCEE
Confidence 1122233443 35778899999986 5688888999999997 6677
Q ss_pred EEEeecC
Q 012547 194 ISLAKGV 200 (461)
Q Consensus 194 Is~tkGi 200 (461)
|.--|.-
T Consensus 102 IDGGNs~ 108 (487)
T KOG2653|consen 102 IDGGNSE 108 (487)
T ss_pred EeCCccc
Confidence 7654443
No 204
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.67 E-value=0.0045 Score=62.60 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=28.6
Q ss_pred CceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEe
Q 012547 43 PLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWR 79 (461)
Q Consensus 43 ~mkI~IIG-aGamG~alA~~La~~~G~~~~~~~V~l~~ 79 (461)
-++|+||| .|.||..||..|.++ | ++|++|.
T Consensus 158 Gk~V~viGrs~~mG~PmA~~L~~~-g-----~tVtv~~ 189 (296)
T PRK14188 158 GLNAVVIGRSNLVGKPMAQLLLAA-N-----ATVTIAH 189 (296)
T ss_pred CCEEEEEcCCcchHHHHHHHHHhC-C-----CEEEEEC
Confidence 37999999 999999999999998 8 8999994
No 205
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=96.66 E-value=0.006 Score=61.85 Aligned_cols=79 Identities=16% Similarity=0.166 Sum_probs=57.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+..+++|||+|..|.+-+..++.-.. -.+|.+|+|++++.+++.+ .+... + +
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~~----i~~v~v~~r~~~~a~~f~~-----~~~~~-------------~-~----- 167 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVYN----PKRIRVYSRNFDHARAFAE-----RFSKE-------------F-G----- 167 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCC----CCEEEEECCCHHHHHHHHH-----HHHHh-------------c-C-----
Confidence 45789999999999998888775312 2689999999987765321 11100 0 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE 172 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~ 172 (461)
..+.+.+++++++.+||+|+.||++..
T Consensus 168 ------------------------~~v~~~~~~~eav~~aDIV~taT~s~~ 194 (301)
T PRK06407 168 ------------------------VDIRPVDNAEAALRDADTITSITNSDT 194 (301)
T ss_pred ------------------------CcEEEeCCHHHHHhcCCEEEEecCCCC
Confidence 135667899999999999999999863
No 206
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.64 E-value=0.012 Score=58.78 Aligned_cols=68 Identities=22% Similarity=0.197 Sum_probs=48.3
Q ss_pred cCcccccccchhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
.+|-++-.|-.-.--+..|+...+. +....++.|+|+|.+|.+++..|+.. |. .+|++++|+.++++.
T Consensus 95 ~~g~l~G~NTD~~G~~~~l~~~~~~-~~~~k~vlVlGaGg~a~ai~~aL~~~-g~----~~V~v~~R~~~~a~~ 162 (278)
T PRK00258 95 EDGRLIGDNTDGIGFVRALEERLGV-DLKGKRILILGAGGAARAVILPLLDL-GV----AEITIVNRTVERAEE 162 (278)
T ss_pred eCCEEEEEcccHHHHHHHHHhccCC-CCCCCEEEEEcCcHHHHHHHHHHHHc-CC----CEEEEEeCCHHHHHH
Confidence 4566666665555555555542322 22346899999999999999999987 62 589999999876654
No 207
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.63 E-value=0.0061 Score=64.15 Aligned_cols=52 Identities=21% Similarity=0.401 Sum_probs=42.9
Q ss_pred hHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 29 LDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 29 ~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
.+..++.+|... ..|+.|||+|-||...|.+|+.. |. ..|++.+|+.++++.
T Consensus 166 v~lA~~~~~~L~--~~~vlvIGAGem~~lva~~L~~~-g~----~~i~IaNRT~erA~~ 217 (414)
T COG0373 166 VELAKRIFGSLK--DKKVLVIGAGEMGELVAKHLAEK-GV----KKITIANRTLERAEE 217 (414)
T ss_pred HHHHHHHhcccc--cCeEEEEcccHHHHHHHHHHHhC-CC----CEEEEEcCCHHHHHH
Confidence 456677886533 36899999999999999999998 73 789999999987764
No 208
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=96.63 E-value=0.02 Score=55.40 Aligned_cols=82 Identities=20% Similarity=0.374 Sum_probs=59.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
|+|++||+|++|..+...+-+. - .+..-|.+|+|+.+++.++. . .+
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~--~-~~~e~v~v~D~~~ek~~~~~---------~-------------~~--------- 46 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDG--R-VDFELVAVYDRDEEKAKELE---------A-------------SV--------- 46 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcC--C-cceeEEEEecCCHHHHHHHH---------h-------------hc---------
Confidence 6899999999999998887643 1 11146889999988665311 0 01
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHH
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR 182 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~ 182 (461)
.....+++++.+.+.|+++.|-.++++++...++..
T Consensus 47 -----------------------~~~~~s~ide~~~~~DlvVEaAS~~Av~e~~~~~L~ 82 (255)
T COG1712 47 -----------------------GRRCVSDIDELIAEVDLVVEAASPEAVREYVPKILK 82 (255)
T ss_pred -----------------------CCCccccHHHHhhccceeeeeCCHHHHHHHhHHHHh
Confidence 112237778878999999999999999998877654
No 209
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=96.63 E-value=0.0083 Score=61.49 Aligned_cols=95 Identities=20% Similarity=0.291 Sum_probs=66.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
-++++|||.|.+|.++|..+. ..| -+|..|+|++. -+. .. ..
T Consensus 146 gktvGIiG~GrIG~avA~r~~-~Fg-----m~v~y~~~~~~-~~~----------~~-------------~~-------- 187 (324)
T COG1052 146 GKTLGIIGLGRIGQAVARRLK-GFG-----MKVLYYDRSPN-PEA----------EK-------------EL-------- 187 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHh-cCC-----CEEEEECCCCC-hHH----------Hh-------------hc--------
Confidence 379999999999999999998 435 78999998863 110 00 00
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHHH-HHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFE-EISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl~-~i~~~l~~~~~~~iIIs~tkGi 200 (461)
+..+.. +++.+++||+|.+.+|. ...+.++. +....+++ +.++|.+.-|=
T Consensus 188 ------------------------~~~y~~-l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~---ga~lVNtaRG~ 239 (324)
T COG1052 188 ------------------------GARYVD-LDELLAESDIISLHCPLTPETRHLINAEELAKMKP---GAILVNTARGG 239 (324)
T ss_pred ------------------------Cceecc-HHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCC---CeEEEECCCcc
Confidence 123333 78889999999999995 46666662 33444665 67888877774
Q ss_pred ccc
Q 012547 201 EAE 203 (461)
Q Consensus 201 ~~~ 203 (461)
..+
T Consensus 240 ~VD 242 (324)
T COG1052 240 LVD 242 (324)
T ss_pred ccC
Confidence 443
No 210
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.62 E-value=0.0063 Score=64.44 Aligned_cols=48 Identities=23% Similarity=0.311 Sum_probs=37.1
Q ss_pred HHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 32 LRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 32 ~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
.++.+|... ..+|+|||+|.||..++..|... |. .+|++|+|+.++++
T Consensus 171 a~~~~~~l~--~~~VlViGaG~iG~~~a~~L~~~-G~----~~V~v~~rs~~ra~ 218 (417)
T TIGR01035 171 AERIFGSLK--GKKALLIGAGEMGELVAKHLLRK-GV----GKILIANRTYERAE 218 (417)
T ss_pred HHHHhCCcc--CCEEEEECChHHHHHHHHHHHHC-CC----CEEEEEeCCHHHHH
Confidence 344554333 36899999999999999999887 62 68999999976544
No 211
>PRK06932 glycerate dehydrogenase; Provisional
Probab=96.62 E-value=0.0056 Score=62.46 Aligned_cols=91 Identities=20% Similarity=0.230 Sum_probs=63.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
-++|+|||.|.+|..+|..+.-- | -+|..|++... + ..
T Consensus 147 gktvgIiG~G~IG~~va~~l~~f-g-----~~V~~~~~~~~--~--------------------------~~-------- 184 (314)
T PRK06932 147 GSTLGVFGKGCLGTEVGRLAQAL-G-----MKVLYAEHKGA--S--------------------------VC-------- 184 (314)
T ss_pred CCEEEEECCCHHHHHHHHHHhcC-C-----CEEEEECCCcc--c--------------------------cc--------
Confidence 37999999999999999988644 6 78888876431 0 00
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCC-chhHHHHH-HHHHHHhhccCCCCEEEEEeecC
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVF-EEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVp-s~~~~~vl-~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
... ..+++++++.||+|++++| +..++.++ ++....+++ ++++|.+.-|=
T Consensus 185 ------------------------~~~-~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~---ga~lIN~aRG~ 236 (314)
T PRK06932 185 ------------------------REG-YTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKP---TAFLINTGRGP 236 (314)
T ss_pred ------------------------ccc-cCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCC---CeEEEECCCcc
Confidence 000 1367888999999999999 45566655 233444566 78899888775
Q ss_pred ccc
Q 012547 201 EAE 203 (461)
Q Consensus 201 ~~~ 203 (461)
..+
T Consensus 237 ~Vd 239 (314)
T PRK06932 237 LVD 239 (314)
T ss_pred ccC
Confidence 444
No 212
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=96.62 E-value=0.011 Score=59.80 Aligned_cols=35 Identities=23% Similarity=0.185 Sum_probs=29.4
Q ss_pred EECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 48 GVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 48 IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
|||+|.+|+++|..|+.. ++. .++.|+|++++.++
T Consensus 1 iIGaG~VG~~~a~~l~~~-~l~---~el~L~Di~~~~~~ 35 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQ-GIA---DEIVLIDINKDKAE 35 (299)
T ss_pred CCCcCHHHHHHHHHHHhc-CCC---CEEEEEeCCCChhh
Confidence 799999999999999887 642 47999999887654
No 213
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=96.59 E-value=0.0094 Score=60.74 Aligned_cols=78 Identities=26% Similarity=0.319 Sum_probs=50.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+..+++|||+|..|..-+..++.-.+ -.+|.+|+|+++.++++.+ .+. . + +
T Consensus 127 ~~~~l~viGaG~QA~~~~~a~~~~~~----i~~v~v~~r~~~~~~~~~~-----~~~-------------~-~-~----- 177 (313)
T PF02423_consen 127 DARTLGVIGAGVQARWHLRALAAVRP----IKEVRVYSRSPERAEAFAA-----RLR-------------D-L-G----- 177 (313)
T ss_dssp T--EEEEE--SHHHHHHHHHHHHHS------SEEEEE-SSHHHHHHHHH-----HHH-------------C-C-C-----
T ss_pred CCceEEEECCCHHHHHHHHHHHHhCC----ceEEEEEccChhHHHHHHH-----hhc-------------c-c-c-----
Confidence 34689999999999998888876422 2689999999987665221 111 0 0 1
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchh
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE 172 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~ 172 (461)
..+...+|.++++++||+|+.|||+..
T Consensus 178 ------------------------~~v~~~~~~~~av~~aDii~taT~s~~ 204 (313)
T PF02423_consen 178 ------------------------VPVVAVDSAEEAVRGADIIVTATPSTT 204 (313)
T ss_dssp ------------------------TCEEEESSHHHHHTTSSEEEE----SS
T ss_pred ------------------------ccceeccchhhhcccCCEEEEccCCCC
Confidence 146778999999999999999999876
No 214
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=96.56 E-value=0.0084 Score=56.51 Aligned_cols=87 Identities=20% Similarity=0.135 Sum_probs=51.5
Q ss_pred eEEEECccHHHHHHHH--HHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhcc
Q 012547 45 RIVGVGAGAWGSVFTA--MLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (461)
Q Consensus 45 kI~IIGaGamG~alA~--~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (461)
||+|||+|+.-+..-. .+... ..+. ..++.|+|+++++++.+.. +.+.+.+ .. +
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~-~~l~-~~ei~L~Did~~RL~~~~~--~~~~~~~----------------~~----~ 56 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRT-EELS-GSEIVLMDIDEERLEIVER--LARRMVE----------------EA----G 56 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCT-TTST-EEEEEEE-SCHHHHHHHHH--HHHHHHH----------------HC----T
T ss_pred CEEEECCchHhhHHHHHHHHhcC-ccCC-CcEEEEEcCCHHHHHHHHH--HHHHHHH----------------hc----C
Confidence 7999999987665332 23332 2222 2589999999988775321 1111111 00 0
Q ss_pred CCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHH
Q 012547 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEV 176 (461)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~v 176 (461)
. . ..+..|+|.++|+++||+||.++-....+..
T Consensus 57 ~-~--------------------~~v~~ttd~~eAl~gADfVi~~irvGg~~~r 89 (183)
T PF02056_consen 57 A-D--------------------LKVEATTDRREALEGADFVINQIRVGGLEAR 89 (183)
T ss_dssp T-S--------------------SEEEEESSHHHHHTTESEEEE---TTHHHHH
T ss_pred C-C--------------------eEEEEeCCHHHHhCCCCEEEEEeeecchHHH
Confidence 0 0 1478899999999999999999976554443
No 215
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=96.55 E-value=0.014 Score=50.60 Aligned_cols=40 Identities=23% Similarity=0.270 Sum_probs=31.3
Q ss_pred cCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 159 WDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 159 ~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
.++|+||+|+|.....+++..+.+.+.+ ++++|.++.-+.
T Consensus 64 ~~~DvV~~~~~~~~~~~~~~~~~~~~~~---g~~viD~s~~~~ 103 (122)
T smart00859 64 LAVDIVFLALPHGVSKEIAPLLPKAAEA---GVKVIDLSSAFR 103 (122)
T ss_pred cCCCEEEEcCCcHHHHHHHHHHHhhhcC---CCEEEECCcccc
Confidence 5799999999999999988766655565 688888775443
No 216
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.54 E-value=0.023 Score=50.32 Aligned_cols=36 Identities=28% Similarity=0.240 Sum_probs=30.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
..||+|+|+|.+|+.+|..|+.. |. .+++++|.+.=
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~-Gv----~~i~lvD~d~v 37 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARS-GV----GKITLVDDDIV 37 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHH-TT----SEEEEEESSBB
T ss_pred CCEEEEECcCHHHHHHHHHHHHh-CC----CceeecCCcce
Confidence 46899999999999999999999 82 58999998753
No 217
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=96.53 E-value=0.013 Score=55.85 Aligned_cols=34 Identities=24% Similarity=0.212 Sum_probs=30.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.||+|+|+|.+|+.++..|+.. |. ..++++|.+.
T Consensus 22 s~VlIiG~gglG~evak~La~~-GV----g~i~lvD~d~ 55 (197)
T cd01492 22 ARILLIGLKGLGAEIAKNLVLS-GI----GSLTILDDRT 55 (197)
T ss_pred CcEEEEcCCHHHHHHHHHHHHc-CC----CEEEEEECCc
Confidence 6899999999999999999999 82 6899999875
No 218
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=96.52 E-value=0.025 Score=47.33 Aligned_cols=81 Identities=19% Similarity=0.268 Sum_probs=53.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+..||+|+|+|..|.+++..+-+..|+ .-+.+++.+++..-. ...
T Consensus 2 k~~~v~ivGag~~G~a~~~~~~~~~g~----~i~~~~dv~~~~~G~-------------------------~i~------ 46 (96)
T PF02629_consen 2 KKTNVIIVGAGNLGRALLYNGFSMRGF----GIVAVFDVDPEKIGK-------------------------EIG------ 46 (96)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHHCE----CEEEEEEECTTTTTS-------------------------EET------
T ss_pred CCCeEEEECCCCcHHHHHHhHHHHcCC----CCEEEEEcCCCccCc-------------------------EEC------
Confidence 457899999999999998655444251 235677777753210 011
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcC--CCEEEEcCCchhHHHHHHHHHH
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISR 182 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~--aDiIIiaVps~~~~~vl~~i~~ 182 (461)
.+.+..+++++.+. .|+-+++||+...++++.++..
T Consensus 47 -------------------------gipV~~~~~~l~~~~~i~iaii~VP~~~a~~~~~~~~~ 84 (96)
T PF02629_consen 47 -------------------------GIPVYGSMDELEEFIEIDIAIITVPAEAAQEVADELVE 84 (96)
T ss_dssp -------------------------TEEEESSHHHHHHHCTTSEEEEES-HHHHHHHHHHHHH
T ss_pred -------------------------CEEeeccHHHhhhhhCCCEEEEEcCHHHHHHHHHHHHH
Confidence 23333445554444 9999999999999999888765
No 219
>PRK06823 ornithine cyclodeaminase; Validated
Probab=96.51 E-value=0.013 Score=59.73 Aligned_cols=95 Identities=16% Similarity=0.223 Sum_probs=64.7
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 41 ~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
.+..+++|||+|..|..-+..++.- ++-.+|.+|+|++++++++.+ .+++ . +
T Consensus 126 ~d~~~l~iiG~G~qA~~~~~a~~~v----~~i~~v~v~~r~~~~a~~~~~-----~~~~--------------~-~---- 177 (315)
T PRK06823 126 QHVSAIGIVGTGIQARMQLMYLKNV----TDCRQLWVWGRSETALEEYRQ-----YAQA--------------L-G---- 177 (315)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhc----CCCCEEEEECCCHHHHHHHHH-----HHHh--------------c-C----
Confidence 3557899999999999988887754 122689999999987765321 1110 0 0
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEE
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIIS 195 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs 195 (461)
..+.+.++.++++.+||+|+.||++.. .+++ ..++++ ++.|+.
T Consensus 178 -------------------------~~v~~~~~~~~av~~ADIV~taT~s~~--P~~~--~~~l~~---G~hi~~ 220 (315)
T PRK06823 178 -------------------------FAVNTTLDAAEVAHAANLIVTTTPSRE--PLLQ--AEDIQP---GTHITA 220 (315)
T ss_pred -------------------------CcEEEECCHHHHhcCCCEEEEecCCCC--ceeC--HHHcCC---CcEEEe
Confidence 135667889999999999999999763 3331 134555 565543
No 220
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=96.51 E-value=0.036 Score=55.01 Aligned_cols=137 Identities=15% Similarity=0.158 Sum_probs=83.4
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 40 ~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
+....||+|+|+|++|.|.|..+... |+- .++.++|-++++++- ++++-+| ...+++
T Consensus 17 ~~~~~KItVVG~G~VGmAca~siL~k-~La---del~lvDv~~dklkG-------E~MDLqH--------~s~f~~---- 73 (332)
T KOG1495|consen 17 EFKHNKITVVGVGQVGMACAISILLK-GLA---DELVLVDVNEDKLKG-------EMMDLQH--------GSAFLS---- 73 (332)
T ss_pred cccCceEEEEccchHHHHHHHHHHHh-hhh---hceEEEecCcchhhh-------hhhhhcc--------cccccc----
Confidence 33457999999999999999987766 531 578999999876542 1222111 001111
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch------------hHHHHHHHHHHHhhcc
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST------------ETKEVFEEISRYWKER 187 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~------------~~~~vl~~i~~~l~~~ 187 (461)
.+++....|... -++++++|+..-.. .--++++.|.|.+-..
T Consensus 74 -------------------------~~~V~~~~Dy~~-sa~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~y 127 (332)
T KOG1495|consen 74 -------------------------TPNVVASKDYSV-SANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKY 127 (332)
T ss_pred -------------------------CCceEecCcccc-cCCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhc
Confidence 135777777754 67999999988442 1233445555533221
Q ss_pred CCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCcEEEEeCcch
Q 012547 188 ITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNI 236 (461)
Q Consensus 188 ~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~ 236 (461)
..+++++.++|.++.- .-+.++..|.|..+ ++=+|.|.
T Consensus 128 Spd~~llvvSNPVDil----------TYv~wKLSgfP~nR-ViGsGcnL 165 (332)
T KOG1495|consen 128 SPDCILLVVSNPVDIL----------TYVTWKLSGFPKNR-VIGSGCNL 165 (332)
T ss_pred CCCeEEEEecCchHHH----------HHHHHHHcCCcccc-eeccCcCc
Confidence 2268888888877643 13346666766555 34466664
No 221
>PRK11579 putative oxidoreductase; Provisional
Probab=96.49 E-value=0.019 Score=58.93 Aligned_cols=48 Identities=13% Similarity=0.146 Sum_probs=33.8
Q ss_pred EEecCHHHHhc--CCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccc
Q 012547 149 KVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 149 ~~t~dl~~av~--~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
.+.+|+++.++ +.|+|++|+|+....+++.+... . +..|+ +-|-+...
T Consensus 51 ~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~~~al~---a---GkhVl-~EKPla~t 100 (346)
T PRK11579 51 TVVSEPQHLFNDPNIDLIVIPTPNDTHFPLAKAALE---A---GKHVV-VDKPFTVT 100 (346)
T ss_pred ceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHH---C---CCeEE-EeCCCCCC
Confidence 34578888775 57999999999888777766543 2 34444 78877654
No 222
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.48 E-value=0.021 Score=66.66 Aligned_cols=44 Identities=11% Similarity=0.058 Sum_probs=32.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCC---------CCeeEEEEecCchhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLR---------DKVLIRIWRRPGRSVD 86 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~---------~~~~V~l~~r~~~~~~ 86 (461)
+++||+|||+|.||...+..|++. .-.. +...|.+.+++.+.++
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~-~~~~~~~~~~~~~~~~lV~VaD~~~~~a~ 620 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASV-KTISYYGDDSEEPTDVHVIVASLYLKDAK 620 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhC-cCccccccccccccccEEEEECCCHHHHH
Confidence 356999999999999999999976 3100 0013888888876554
No 223
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=96.46 E-value=0.016 Score=59.81 Aligned_cols=44 Identities=25% Similarity=0.283 Sum_probs=32.6
Q ss_pred CHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 153 dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
|.++...++|+||+|+|....++++.++.. . +..||.++.-+-.
T Consensus 61 ~~~~~~~~~DvVf~alP~~~s~~~~~~~~~---~---G~~VIDlS~~fR~ 104 (346)
T TIGR01850 61 DEEEIAEDADVVFLALPHGVSAELAPELLA---A---GVKVIDLSADFRL 104 (346)
T ss_pred CHHHhhcCCCEEEECCCchHHHHHHHHHHh---C---CCEEEeCChhhhc
Confidence 445555689999999999988888877653 2 5788888865543
No 224
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=96.45 E-value=0.013 Score=59.89 Aligned_cols=35 Identities=23% Similarity=0.378 Sum_probs=27.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEE-EEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~-l~~r~~ 82 (461)
++||+|||+|+||...+..+..+.+ .++. +|+|++
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd-----~ELVgV~dr~~ 38 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPD-----MELVGVFSRRG 38 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCC-----cEEEEEEcCCc
Confidence 4799999999999999988876522 4444 577774
No 225
>PLN02494 adenosylhomocysteinase
Probab=96.43 E-value=0.02 Score=61.32 Aligned_cols=67 Identities=22% Similarity=0.168 Sum_probs=46.9
Q ss_pred cccccccCcc--cccccchhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 8 VNDSLSSNGL--IHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 8 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
||||...... .|-|.-|+ +|-+-|..+..- .-.+|+|+|.|.+|..+|..+..- | .+|+++++++.+
T Consensus 221 vnds~~K~~fDn~yGtgqS~---~d~i~r~t~i~L-aGKtVvViGyG~IGr~vA~~aka~-G-----a~VIV~e~dp~r 289 (477)
T PLN02494 221 VNDSVTKSKFDNLYGCRHSL---PDGLMRATDVMI-AGKVAVICGYGDVGKGCAAAMKAA-G-----ARVIVTEIDPIC 289 (477)
T ss_pred EcChhhhhhhhccccccccH---HHHHHHhcCCcc-CCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCchh
Confidence 6777654322 23333444 666666655422 236899999999999999999866 7 789999988753
No 226
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=96.39 E-value=0.028 Score=55.93 Aligned_cols=81 Identities=20% Similarity=0.195 Sum_probs=55.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.+||+|||+|++|..++..+... + .. +.+ +.+++|+.+..+. +..
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~-~-~~-~~~l~~V~~~~~~~~~~--------------------------~~~----- 47 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLAD-A-AQ-PCQLAALTRNAADLPPA--------------------------LAG----- 47 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcC-C-CC-ceEEEEEecCCHHHHHH--------------------------hhc-----
Confidence 47999999999999999998754 2 11 133 3345555433221 100
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHH-hcCCCEEEEcCCchhHHHHHHHHHH
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEA-VWDADIVINGLPSTETKEVFEEISR 182 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~a-v~~aDiIIiaVps~~~~~vl~~i~~ 182 (461)
...+.+|+++. ...+|+|+.|-.++.+++....+..
T Consensus 48 -------------------------~~~~~~~l~~ll~~~~DlVVE~A~~~av~e~~~~iL~ 84 (267)
T PRK13301 48 -------------------------RVALLDGLPGLLAWRPDLVVEAAGQQAIAEHAEGCLT 84 (267)
T ss_pred -------------------------cCcccCCHHHHhhcCCCEEEECCCHHHHHHHHHHHHh
Confidence 12345677774 5789999999999999998888754
No 227
>PRK06046 alanine dehydrogenase; Validated
Probab=96.37 E-value=0.011 Score=60.40 Aligned_cols=42 Identities=19% Similarity=0.293 Sum_probs=33.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
+..+|+|||+|.+|...+..++...+ -..|.+|+|++++.++
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~----i~~v~v~~r~~~~~~~ 169 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFD----LEEVRVYDRTKSSAEK 169 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCC----ceEEEEECCCHHHHHH
Confidence 45789999999999999988875412 2689999999876654
No 228
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.30 E-value=0.054 Score=50.45 Aligned_cols=33 Identities=24% Similarity=0.281 Sum_probs=29.8
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
||+|||+|.+|+.++..|++. |. .+++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~-Gv----g~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-GV----GNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-CC----CeEEEEeCCE
Confidence 689999999999999999999 82 4799999986
No 229
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=96.29 E-value=0.023 Score=57.50 Aligned_cols=98 Identities=19% Similarity=0.185 Sum_probs=64.2
Q ss_pred CCceEEEECccHHH-HHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 42 DPLRIVGVGAGAWG-SVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 42 ~~mkI~IIGaGamG-~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
+++||+|||+|.++ ...+..+... +-. -.-|-+++++++++++..++ |
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~-~~~--~~~vav~d~~~~~a~~~a~~---------------------~------- 50 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAAL-GGG--LELVAVVDRDPERAEAFAEE---------------------F------- 50 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhC-CCc--eEEEEEecCCHHHHHHHHHH---------------------c-------
Confidence 46899999999555 5577777765 300 03467788888765532110 0
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCe-EEecCHHHHhcC--CCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEe
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPL-KVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i-~~t~dl~~av~~--aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~t 197 (461)
++ ...+|+++.+++ .|+|+||+|+....+++... +.. +.. |.|-
T Consensus 51 --------------------------~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~A---L~a---Gkh-Vl~E 97 (342)
T COG0673 51 --------------------------GIAKAYTDLEELLADPDIDAVYIATPNALHAELALAA---LEA---GKH-VLCE 97 (342)
T ss_pred --------------------------CCCcccCCHHHHhcCCCCCEEEEcCCChhhHHHHHHH---Hhc---CCE-EEEc
Confidence 11 456788887765 59999999999888877443 333 343 4588
Q ss_pred ecCccc
Q 012547 198 KGVEAE 203 (461)
Q Consensus 198 kGi~~~ 203 (461)
|.+...
T Consensus 98 KPla~t 103 (342)
T COG0673 98 KPLALT 103 (342)
T ss_pred CCCCCC
Confidence 888764
No 230
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.28 E-value=0.035 Score=52.91 Aligned_cols=36 Identities=25% Similarity=0.233 Sum_probs=31.4
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
..||.|||+|.+|+.+|..|+.. |. .+++++|.+.-
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~-Gv----~~i~lvD~d~v 56 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGA-GV----GTIVIVDDDHV 56 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHc-CC----CeEEEecCCEE
Confidence 36899999999999999999999 82 58999998853
No 231
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.26 E-value=0.023 Score=59.30 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=34.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
...+|.|||+|.+|...+..+... | .+|++++|+.++++
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l-G-----a~V~v~d~~~~~~~ 204 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL-G-----ATVTILDINIDRLR 204 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC-C-----CeEEEEECCHHHHH
Confidence 557899999999999999999987 8 78999999876554
No 232
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.24 E-value=0.018 Score=53.58 Aligned_cols=45 Identities=18% Similarity=0.233 Sum_probs=33.6
Q ss_pred HHHHHhhcCCCCCCceEEEECccHH-HHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 30 DELRRLMGKAEGDPLRIVGVGAGAW-GSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 30 ~~~~~~~~~~~~~~mkI~IIGaGam-G~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
+.++..++ +-...||.|||+|-| |..+|..|.+. | .+|++.+|+.
T Consensus 33 ~l~~~~~~--~l~gk~vlViG~G~~~G~~~a~~L~~~-g-----~~V~v~~r~~ 78 (168)
T cd01080 33 ELLKRYGI--DLAGKKVVVVGRSNIVGKPLAALLLNR-N-----ATVTVCHSKT 78 (168)
T ss_pred HHHHHcCC--CCCCCEEEEECCcHHHHHHHHHHHhhC-C-----CEEEEEECCc
Confidence 34455543 334478999999987 88899999988 7 6788887763
No 233
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.22 E-value=0.054 Score=57.19 Aligned_cols=69 Identities=16% Similarity=0.126 Sum_probs=44.4
Q ss_pred cccccccCcccccccchhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 8 VNDSLSSNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
||||..... .+..-|.=+.-+|.+-|..+.. ..-.+|+|+|+|.+|..+|..+... | .+|+++++++.+
T Consensus 162 vnds~~K~~-fDn~yg~g~s~~~~i~r~t~~~-l~Gk~VvViG~G~IG~~vA~~ak~~-G-----a~ViV~d~dp~r 230 (406)
T TIGR00936 162 VNDAYTKSL-FDNRYGTGQSTIDGILRATNLL-IAGKTVVVAGYGWCGKGIAMRARGM-G-----ARVIVTEVDPIR 230 (406)
T ss_pred ecchhhchh-hhcccccchhHHHHHHHhcCCC-CCcCEEEEECCCHHHHHHHHHHhhC-c-----CEEEEEeCChhh
Confidence 567655432 1211122233445554544321 1235899999999999999999877 7 889999988753
No 234
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.19 E-value=0.054 Score=57.55 Aligned_cols=49 Identities=18% Similarity=0.125 Sum_probs=36.7
Q ss_pred hHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 29 LDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 29 ~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
++-+++.-+.. -.-.+|+|+|+|.+|..+|..+... | .+|+++++++.+
T Consensus 199 ~~ai~rat~~~-l~Gk~VlViG~G~IG~~vA~~lr~~-G-----a~ViV~d~dp~r 247 (425)
T PRK05476 199 LDGIKRATNVL-IAGKVVVVAGYGDVGKGCAQRLRGL-G-----ARVIVTEVDPIC 247 (425)
T ss_pred HHHHHHhccCC-CCCCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEcCCchh
Confidence 45555443221 1236899999999999999999887 7 889999998754
No 235
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.17 E-value=0.053 Score=55.92 Aligned_cols=34 Identities=29% Similarity=0.303 Sum_probs=30.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.+|.|||+|.+|+.+|..|+.. |. ..++++|++.
T Consensus 25 ~~VlIiG~GglGs~va~~La~a-Gv----g~i~lvD~D~ 58 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRA-GI----GKLTIADRDY 58 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CC----CEEEEEcCCc
Confidence 6899999999999999999999 81 4899999885
No 236
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=96.16 E-value=0.017 Score=59.19 Aligned_cols=95 Identities=18% Similarity=0.322 Sum_probs=64.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhccC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (461)
++|+|+|.|.+|.++|..|..- | ..+.-+.|++..-+. .. .|..
T Consensus 163 K~vgilG~G~IG~~ia~rL~~F-g-----~~i~y~~r~~~~~~~----------~~------------~~~~-------- 206 (336)
T KOG0069|consen 163 KTVGILGLGRIGKAIAKRLKPF-G-----CVILYHSRTQLPPEE----------AY------------EYYA-------- 206 (336)
T ss_pred CEEEEecCcHHHHHHHHhhhhc-c-----ceeeeecccCCchhh----------HH------------Hhcc--------
Confidence 6899999999999999999864 5 455555565432221 00 0100
Q ss_pred CccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCc-hhHHHHHH-HHHHHhhccCCCCEEEEEeecCc
Q 012547 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFE-EISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps-~~~~~vl~-~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
. ..|..+.+.++|+|++|.|- ..++.++. ++...+++ +.++|.+.-|=.
T Consensus 207 -------------------------~-~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~---g~vlVN~aRG~i 257 (336)
T KOG0069|consen 207 -------------------------E-FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKD---GAVLVNTARGAI 257 (336)
T ss_pred -------------------------c-ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCC---CeEEEecccccc
Confidence 1 23556778899999999995 57777774 46666776 678888887744
Q ss_pred cc
Q 012547 202 AE 203 (461)
Q Consensus 202 ~~ 203 (461)
.+
T Consensus 258 id 259 (336)
T KOG0069|consen 258 ID 259 (336)
T ss_pred cc
Confidence 43
No 237
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.15 E-value=0.04 Score=55.32 Aligned_cols=68 Identities=19% Similarity=0.163 Sum_probs=46.5
Q ss_pred CcccccccchhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
+|-++-.|-.-.-=+.-||+.-...+....++.|||+|.+|.+++..|++. |. .+|++++|+.++++.
T Consensus 97 ~g~l~G~NTD~~G~~~~l~~~~~~~~~~~k~vlvlGaGGaarai~~aL~~~-G~----~~i~I~nRt~~ka~~ 164 (282)
T TIGR01809 97 NGIWKGDNTDWDGIAGALANIGKFEPLAGFRGLVIGAGGTSRAAVYALASL-GV----TDITVINRNPDKLSR 164 (282)
T ss_pred CCcEEEecCCHHHHHHHHHhhCCccccCCceEEEEcCcHHHHHHHHHHHHc-CC----CeEEEEeCCHHHHHH
Confidence 555555555544444555542211122346899999999999999999988 72 589999999877654
No 238
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=96.07 E-value=0.062 Score=49.67 Aligned_cols=49 Identities=18% Similarity=0.176 Sum_probs=33.1
Q ss_pred hhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 28 RLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 28 ~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
-+|-+.|-.+..-. -+++.|+|.|..|..+|..|... | .+|+++++++-
T Consensus 9 ~~d~i~r~t~~~l~-Gk~vvV~GYG~vG~g~A~~lr~~-G-----a~V~V~e~DPi 57 (162)
T PF00670_consen 9 LVDGIMRATNLMLA-GKRVVVIGYGKVGKGIARALRGL-G-----ARVTVTEIDPI 57 (162)
T ss_dssp HHHHHHHHH-S--T-TSEEEEE--SHHHHHHHHHHHHT-T------EEEEE-SSHH
T ss_pred HHHHHHhcCceeeC-CCEEEEeCCCcccHHHHHHHhhC-C-----CEEEEEECChH
Confidence 34555555443332 25899999999999999999988 8 89999999984
No 239
>PRK08328 hypothetical protein; Provisional
Probab=96.07 E-value=0.063 Score=52.32 Aligned_cols=57 Identities=21% Similarity=0.246 Sum_probs=41.4
Q ss_pred HhhHHHHHhhcCCC---CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhh
Q 012547 27 ERLDELRRLMGKAE---GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (461)
Q Consensus 27 ~~~~~~~~~~~~~~---~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (461)
+|.+.=++++|... -...||+|+|+|..|+.++..|+.. |. .+++++|.+.-....+
T Consensus 8 ~ry~Rq~~~~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~-Gv----g~i~lvD~D~ve~sNL 67 (231)
T PRK08328 8 ERYDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAA-GV----GRILLIDEQTPELSNL 67 (231)
T ss_pred HHHhhHHHhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHc-CC----CEEEEEcCCccChhhh
Confidence 46665555665432 2236899999999999999999999 83 6899998776444433
No 240
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.04 E-value=0.061 Score=56.97 Aligned_cols=50 Identities=16% Similarity=0.120 Sum_probs=38.3
Q ss_pred hHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012547 29 LDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (461)
Q Consensus 29 ~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (461)
+|.+-+..+..- .-.+|+|+|+|.+|..++..+... | .+|+++++++.+.
T Consensus 189 ~~~i~r~t~~~l-~GktVvViG~G~IG~~va~~ak~~-G-----a~ViV~d~d~~R~ 238 (413)
T cd00401 189 IDGIKRATDVMI-AGKVAVVAGYGDVGKGCAQSLRGQ-G-----ARVIVTEVDPICA 238 (413)
T ss_pred HHHHHHhcCCCC-CCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEECChhhH
Confidence 566666554422 235899999999999999998877 8 7899999987644
No 241
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.00 E-value=0.027 Score=51.63 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=31.8
Q ss_pred EEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 46 IVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 46 I~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
|.|+|+ |.+|..++..|.+. | ++|++..|++++.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~-~-----~~V~~~~R~~~~~~ 36 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR-G-----HEVTALVRSPSKAE 36 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT-T-----SEEEEEESSGGGHH
T ss_pred eEEECCCChHHHHHHHHHHHC-C-----CEEEEEecCchhcc
Confidence 789997 99999999999999 7 99999999987554
No 242
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.99 E-value=0.015 Score=60.65 Aligned_cols=37 Identities=27% Similarity=0.436 Sum_probs=30.3
Q ss_pred EEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhhhh
Q 012547 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDR 87 (461)
Q Consensus 46 I~IIGaGamG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~~ 87 (461)
|.|+|+|.+|.+++..|++. + .+ +|++.+|+.+++++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~-~----~~~~v~va~r~~~~~~~ 38 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR-G----PFEEVTVADRNPEKAER 38 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT-T----CE-EEEEEESSHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcC-C----CCCcEEEEECCHHHHHH
Confidence 78999999999999999988 4 25 89999999987664
No 243
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=95.96 E-value=0.03 Score=60.40 Aligned_cols=66 Identities=21% Similarity=0.240 Sum_probs=47.4
Q ss_pred cCcccccccchhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
.+|-++-.|-.-.-=+.-||+. +. +...++++|+|+|.+|.+++..|++. | .+|.+++|+.++++.
T Consensus 305 ~~g~l~G~NTD~~G~~~~l~~~-~~-~~~~k~vlIiGaGgiG~aia~~L~~~-G-----~~V~i~~R~~~~~~~ 370 (477)
T PRK09310 305 RNGKIEGYNTDGEGLFSLLKQK-NI-PLNNQHVAIVGAGGAAKAIATTLARA-G-----AELLIFNRTKAHAEA 370 (477)
T ss_pred eCCEEEEEecCHHHHHHHHHhc-CC-CcCCCEEEEEcCcHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHH
Confidence 3666666665555555555542 11 22346899999999999999999998 8 799999998765543
No 244
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=95.95 E-value=0.043 Score=47.71 Aligned_cols=84 Identities=20% Similarity=0.253 Sum_probs=55.9
Q ss_pred ceEEEEC----ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 44 LRIVGVG----AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 44 mkI~IIG----aGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
++|+||| .+.+|..+...|.+. | ++|+.++.+.+.++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~-G-----~~v~~Vnp~~~~i~--------------------------------- 41 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAA-G-----YEVYPVNPKGGEIL--------------------------------- 41 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHT-T------EEEEESTTCSEET---------------------------------
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhC-C-----CEEEEECCCceEEC---------------------------------
Confidence 4799999 699999999999988 8 78887765542211
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
++....++++.-...|++++++|+..+.++++++... . .--+.++.|
T Consensus 42 ---------------------------G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~-g-----~~~v~~~~g 88 (116)
T PF13380_consen 42 ---------------------------GIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAAL-G-----VKAVWLQPG 88 (116)
T ss_dssp ---------------------------TEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHH-T------SEEEE-TT
T ss_pred ---------------------------cEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHc-C-----CCEEEEEcc
Confidence 2334455555236789999999999999999998764 2 223556667
No 245
>PRK06199 ornithine cyclodeaminase; Validated
Probab=95.91 E-value=0.038 Score=57.86 Aligned_cols=81 Identities=21% Similarity=0.222 Sum_probs=56.7
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+..+++|||+|..|..-...++.- - .+-.+|.+|+|++++++++.+ .+.. .++++
T Consensus 154 da~~l~iiG~G~QA~~~l~a~~~v-~--~~i~~V~v~~r~~~~a~~f~~-----~~~~-------------~~~~~---- 208 (379)
T PRK06199 154 DSKVVGLLGPGVMGKTILAAFMAV-C--PGIDTIKIKGRGQKSLDSFAT-----WVAE-------------TYPQI---- 208 (379)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHh-c--CCccEEEEECCCHHHHHHHHH-----HHHH-------------hcCCC----
Confidence 457899999999999999888763 1 001589999999987765321 1111 01100
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCch
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST 171 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~ 171 (461)
..+.+.+|.++++.+||+|+.||++.
T Consensus 209 ------------------------~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 209 ------------------------TNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred ------------------------ceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 02566789999999999999999753
No 246
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=95.88 E-value=0.071 Score=47.53 Aligned_cols=33 Identities=30% Similarity=0.313 Sum_probs=29.3
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
||.|||+|.+|+.++..|+.. |. .+++++|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-Gv----~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-GV----GKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CC----CEEEEEcCCC
Confidence 689999999999999999999 82 4799998874
No 247
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.87 E-value=0.02 Score=57.58 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=27.6
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEE
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIW 78 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~ 78 (461)
++|+|||. |.||..+|..|.++ | ++|++|
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~-g-----atVtv~ 188 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDK-N-----ATVTLT 188 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHC-C-----CEEEEE
Confidence 68999999 99999999999998 7 899999
No 248
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=95.84 E-value=0.041 Score=55.77 Aligned_cols=43 Identities=23% Similarity=0.249 Sum_probs=33.5
Q ss_pred HHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCc
Q 012547 154 LQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (461)
Q Consensus 154 l~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~ 201 (461)
+++.++++|+||.|+-+...+.++..+....+ .++|+..-|++
T Consensus 102 l~~li~~~DvV~d~tDn~esR~L~~~~~~~~~-----k~~I~aalGfd 144 (307)
T cd01486 102 LEELIKDHDVIFLLTDSRESRWLPTLLSAAKN-----KLVINAALGFD 144 (307)
T ss_pred HHHHHhhCCEEEECCCCHHHHHHHHHHHHHhC-----CcEEEEEeccc
Confidence 55778999999999999999998888876433 46777666664
No 249
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.79 E-value=0.022 Score=53.50 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=34.4
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
..+++.|+|+ |.+|.+++..|++. | ++|++++|+.++++.
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~-g-----~~V~l~~R~~~~~~~ 67 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLARE-G-----ARVVLVGRDLERAQK 67 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEcCCHHHHHH
Confidence 3479999996 99999999999988 7 899999999776553
No 250
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.78 E-value=0.055 Score=46.06 Aligned_cols=36 Identities=22% Similarity=0.411 Sum_probs=31.2
Q ss_pred EEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 46 I~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
|.|+|.|.+|..++..|.+. + .+|.+++++++.++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-~-----~~vvvid~d~~~~~~ 36 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-G-----IDVVVIDRDPERVEE 36 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-T-----SEEEEEESSHHHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhC-C-----CEEEEEECCcHHHHH
Confidence 67999999999999999987 5 699999999987664
No 251
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=95.77 E-value=0.082 Score=53.65 Aligned_cols=37 Identities=14% Similarity=0.167 Sum_probs=27.2
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeE-EEEecCch
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGR 83 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V-~l~~r~~~ 83 (461)
+++||+|||+|.+|+.+...+.+. . ..++ .+++++++
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~~-~----~velvAVvdid~e 40 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILRS-E----HLEPGAMVGIDPE 40 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhcC-C----CcEEEEEEeCChh
Confidence 358999999999999988777654 2 1444 46777764
No 252
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=95.70 E-value=0.053 Score=54.56 Aligned_cols=61 Identities=15% Similarity=0.111 Sum_probs=43.9
Q ss_pred cCcccccccchhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCc
Q 012547 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPG 82 (461)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~-~V~l~~r~~ 82 (461)
.+|-++-.|-.-.-=..-||..+. +...+++.|+|+|..|.+++..|++. | . +|++++|+.
T Consensus 99 ~~g~l~G~NTD~~G~~~~l~~~~~--~~~~k~vlI~GAGGagrAia~~La~~-G-----~~~V~I~~R~~ 160 (289)
T PRK12548 99 DDGKLTGHITDGLGFVRNLREHGV--DVKGKKLTVIGAGGAATAIQVQCALD-G-----AKEITIFNIKD 160 (289)
T ss_pred ECCEEEEEecCHHHHHHHHHhcCC--CcCCCEEEEECCcHHHHHHHHHHHHC-C-----CCEEEEEeCCc
Confidence 456666666555544555554332 22335799999999999999999988 8 5 599999987
No 253
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.62 E-value=0.058 Score=55.46 Aligned_cols=96 Identities=18% Similarity=0.159 Sum_probs=59.3
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+|||+|+|| |..|..+...|++. |. +..++....++.+.-+. ..+.+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~-~h--p~~~l~~l~s~~~~g~~------------------------l~~~g----- 48 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEER-NF--PVDKLRLLASARSAGKE------------------------LSFKG----- 48 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC-CC--CcceEEEEEccccCCCe------------------------eeeCC-----
Confidence 379999997 99999999999987 51 01244666665432111 00100
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
..+.+.+.....+.++|+||+|+|+...++++.++.. . +..||.++.-+
T Consensus 49 ------------------------~~i~v~d~~~~~~~~vDvVf~A~g~g~s~~~~~~~~~---~---G~~VIDlS~~~ 97 (334)
T PRK14874 49 ------------------------KELKVEDLTTFDFSGVDIALFSAGGSVSKKYAPKAAA---A---GAVVIDNSSAF 97 (334)
T ss_pred ------------------------ceeEEeeCCHHHHcCCCEEEECCChHHHHHHHHHHHh---C---CCEEEECCchh
Confidence 0122221111235789999999999988888877643 3 56778766443
No 254
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.53 E-value=0.064 Score=51.26 Aligned_cols=34 Identities=24% Similarity=0.205 Sum_probs=30.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
..++|.|||+|.+|...+..|.+. | ++|++++++
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~-g-----a~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKY-G-----AHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEcCC
Confidence 346999999999999999999998 8 899999865
No 255
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.50 E-value=0.074 Score=54.85 Aligned_cols=24 Identities=38% Similarity=0.686 Sum_probs=21.8
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHh
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDS 65 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~ 65 (461)
+++||+|+|| |..|..+...|.+.
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~ 27 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEER 27 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhC
Confidence 4589999998 99999999999976
No 256
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=95.48 E-value=0.058 Score=56.58 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=30.4
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
++|||+|+|| |..|..+...|..+ - .++|+++.++..
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~h-P----~~el~~l~s~~s 74 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANH-P----DFEITVMTADRK 74 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhC-C----CCeEEEEEChhh
Confidence 5679999998 99999999999876 2 268888887643
No 257
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=95.47 E-value=0.1 Score=50.53 Aligned_cols=35 Identities=26% Similarity=0.279 Sum_probs=30.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.||.|+|+|.+|+.+|..|+.. |. .+++++|.+.-
T Consensus 22 ~~VlivG~GglGs~va~~La~~-Gv----g~i~lvD~D~v 56 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAA-GV----GKLGLVDDDVV 56 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CC----CEEEEEcCCEE
Confidence 5899999999999999999999 82 68999987753
No 258
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=95.41 E-value=0.14 Score=51.67 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=26.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeE-EEEecCchh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRS 84 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V-~l~~r~~~~ 84 (461)
+||+|||+|.||..++..+.+. . +.++ -+++++++.
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~-~----~~elvaV~d~d~es 38 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRS-E----HLEMVAMVGIDPES 38 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhC-C----CcEEEEEEeCCccc
Confidence 6999999999999887776644 2 1444 467777653
No 259
>PRK04148 hypothetical protein; Provisional
Probab=95.36 E-value=0.12 Score=46.27 Aligned_cols=88 Identities=19% Similarity=0.239 Sum_probs=62.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
+.+||.+||+| .|..+|..|++. | ++|+.+|.+++.++.++... ...+.
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~-G-----~~ViaIDi~~~aV~~a~~~~---------------------~~~v~--- 64 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKES-G-----FDVIVIDINEKAVEKAKKLG---------------------LNAFV--- 64 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHC-C-----CEEEEEECCHHHHHHHHHhC---------------------CeEEE---
Confidence 34799999999 999999999998 8 99999999998665422110 11100
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhc
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKE 186 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~ 186 (461)
. .+ +..++ +..++||+|.-.=|+..+..-+-+++.-++.
T Consensus 65 d------------------------Dl-f~p~~-~~y~~a~liysirpp~el~~~~~~la~~~~~ 103 (134)
T PRK04148 65 D------------------------DL-FNPNL-EIYKNAKLIYSIRPPRDLQPFILELAKKINV 103 (134)
T ss_pred C------------------------cC-CCCCH-HHHhcCCEEEEeCCCHHHHHHHHHHHHHcCC
Confidence 0 11 12333 3468899999999998888878888776654
No 260
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=95.33 E-value=0.13 Score=48.83 Aligned_cols=34 Identities=26% Similarity=0.274 Sum_probs=30.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.||+|||+|..|+.++..|+.. |. .+++++|.+.
T Consensus 20 s~VlviG~gglGsevak~L~~~-GV----g~i~lvD~d~ 53 (198)
T cd01485 20 AKVLIIGAGALGAEIAKNLVLA-GI----DSITIVDHRL 53 (198)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CC----CEEEEEECCc
Confidence 6899999999999999999999 83 6899999875
No 261
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=95.24 E-value=0.15 Score=52.75 Aligned_cols=35 Identities=20% Similarity=0.249 Sum_probs=27.2
Q ss_pred CeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHH
Q 012547 147 PLKVVTNLQEAVWDADIVINGLPSTETKEVFEEIS 181 (461)
Q Consensus 147 ~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~ 181 (461)
.+.+..++++...++|+||.|+|+....+.++...
T Consensus 65 ~i~V~~~~~el~~~vDVVIdaT~~~~~~e~a~~~~ 99 (341)
T PRK04207 65 GIPVAGTIEDLLEKADIVVDATPGGVGAKNKELYE 99 (341)
T ss_pred ceEEcCChhHhhccCCEEEECCCchhhHHHHHHHH
Confidence 35666777777788999999999988877776544
No 262
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.24 E-value=0.058 Score=59.18 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=34.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
-+|.|+|+|.+|..+|..|.+. | ++|.+++.++++++.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~-g-----~~vvvId~d~~~~~~ 455 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAA-G-----IPLVVIETSRTRVDE 455 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHC-C-----CCEEEEECCHHHHHH
Confidence 5799999999999999999998 7 999999999987765
No 263
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=95.23 E-value=0.099 Score=56.14 Aligned_cols=36 Identities=17% Similarity=0.105 Sum_probs=31.4
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
-++|+|||.|.+|..+|..+... | .+|+++++++..
T Consensus 254 GKtVgVIG~G~IGr~vA~rL~a~-G-----a~ViV~e~dp~~ 289 (476)
T PTZ00075 254 GKTVVVCGYGDVGKGCAQALRGF-G-----ARVVVTEIDPIC 289 (476)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCchh
Confidence 36899999999999999999877 7 889999888643
No 264
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=95.20 E-value=0.12 Score=52.15 Aligned_cols=68 Identities=18% Similarity=0.189 Sum_probs=48.6
Q ss_pred CcccccccchhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
+|-++-.|-.-.--+.-|++.-.-.+..-.+|.|+|||-.+.+++..|++. | ..+|++++|+.+++++
T Consensus 98 ~g~l~G~NTD~~G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~-g----~~~i~V~NRt~~ra~~ 165 (283)
T COG0169 98 DGKLRGYNTDGIGFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEA-G----AKRITVVNRTRERAEE 165 (283)
T ss_pred CCEEEEEcCCHHHHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHc-C----CCEEEEEeCCHHHHHH
Confidence 577666665554444444443221222346899999999999999999999 8 2589999999987765
No 265
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.20 E-value=0.14 Score=50.26 Aligned_cols=40 Identities=20% Similarity=0.240 Sum_probs=33.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (461)
.||.|+|+|..|+.+|..|+.. |. .+++++|.+.-....+
T Consensus 25 ~~VlvvG~GglGs~va~~La~~-Gv----g~i~lvD~D~ve~sNL 64 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAA-GV----GNLTLLDFDTVSLSNL 64 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHc-CC----CEEEEEeCCcccccCc
Confidence 5899999999999999999999 83 6899998886444333
No 266
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=95.16 E-value=0.21 Score=50.45 Aligned_cols=63 Identities=17% Similarity=0.235 Sum_probs=43.4
Q ss_pred cCcccccccchhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.+|-++-.|-.-.-=+.-|+.. + .+....++.|+|+|..+.+++..|+.. |. .+|++++|+.+
T Consensus 97 ~~g~l~G~NTD~~Gf~~~l~~~-~-~~~~~k~vlvlGaGGaarAi~~~l~~~-g~----~~i~i~nRt~~ 159 (288)
T PRK12749 97 DDGYLRGYNTDGTGHIRAIKES-G-FDIKGKTMVLLGAGGASTAIGAQGAIE-GL----KEIKLFNRRDE 159 (288)
T ss_pred cCCEEEEEecCHHHHHHHHHhc-C-CCcCCCEEEEECCcHHHHHHHHHHHHC-CC----CEEEEEeCCcc
Confidence 4566665565444444444432 1 122335899999999999999999987 72 58999999964
No 267
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.14 E-value=1.6 Score=44.72 Aligned_cols=234 Identities=17% Similarity=0.211 Sum_probs=133.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhhc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (461)
.+.++.++|+|...--+|..+..+ | +..+-+++|...+-++ +.+-++... +.++.+... -
T Consensus 3 ~m~~vLllGtGpvaIQlAv~l~~h-~----d~~lg~~~r~s~rse~-----l~qala~~~---------ql~l~~q~e-a 62 (431)
T COG4408 3 NMLPVLLLGTGPVAIQLAVDLSAH-G----DARLGLYNRPSTRSER-----LKQALALTP---------QLYLQGQGE-A 62 (431)
T ss_pred cccceeEeecCcHHHHHHHHHHhc-c----CceeeccCCCCchhHH-----HHHHHhcCC---------eEEEEeccH-H
Confidence 456899999999999999999988 6 4788899987654443 333333221 123332100 0
Q ss_pred cCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHH-HhhccCCCCEEEEEeecC
Q 012547 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR-YWKERITVPVIISLAKGV 200 (461)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~-~l~~~~~~~iIIs~tkGi 200 (461)
.+.+ +-.+.+ -.+..|++++..+.+-+|+|||.++..+++++|.- .++. -+.+|-++..+
T Consensus 63 -hr~l------eg~~~i---------d~~~kd~a~~~~dwqtlilav~aDaY~dvlqqi~~e~L~~---vk~viLiSptf 123 (431)
T COG4408 63 -HRQL------EGSVTI---------DCYIKDLAQAVGDWQTLILAVPADAYYDVLQQIPWEALPQ---VKSVILISPTF 123 (431)
T ss_pred -HHhh------cCceeh---------hHHHhhHHHhhchhheEEEEeecHHHHHHHhcCCHhHhcc---ccEEEEecccc
Confidence 0000 000000 12346889999999999999999999999999853 2332 23333344334
Q ss_pred ccccccccccCCHHHHHHhHhCCCCCcE------------EEEeCcchhHhhhccCceEEEEe---CChhHHHHHHHHhc
Q 012547 201 EAELEAVPRIITPTQMINRATGVPIENI------------LYLGGPNIASEIYNKEYANARIC---GAEKWRKPLAKFLR 265 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~v------------~vlsGPn~a~ev~~g~~~~~~~~---~~~~~~~~l~~ll~ 265 (461)
+.. ..++..+.+ +|.. ..+ .--.-|+++---+-.+. +..+ ++...++++.++|.
T Consensus 124 Gsn-------~lv~~~mnk-~~~d-aeViS~SsY~~dTk~id~~~p~~alTkavKkr--iYlgs~~~ns~~~e~l~~v~a 192 (431)
T COG4408 124 GSN-------LLVQNLMNK-AGRD-AEVISLSSYYADTKYIDAEQPNRALTKAVKKR--IYLGSQHGNSGSAEMLTAVLA 192 (431)
T ss_pred ccc-------HHHHHHHhh-hCCC-ceEEEeehhcccceeecccCcchHHHHHHhHh--eeeccCCCCChHHHHHHHHHH
Confidence 332 223333333 2311 111 11123555443222111 1222 35677899999999
Q ss_pred CCCceEEecCChHHHHHHH--------HHHHHHHHHHhhcc------------CccchHHH--HHHHHHHHHHHHHHHhC
Q 012547 266 RPHFTVWDNGDLVTHEVMG--------GLKNVYAIGAALTN------------ESATSKSV--YFAHCTSEMVFITHLLA 323 (461)
Q Consensus 266 ~~g~~v~~s~Di~gve~~g--------alKNv~Ai~~Gi~~------------g~~n~~a~--l~~~~~~Em~~l~~a~G 323 (461)
..|+.+...+.+...|-.. .+-|=.++.+=+.. .|+=+.+. -|+..-.|+.++..++|
T Consensus 193 q~~I~v~~~esp~~AEtrnit~YVHpPlflndfsL~aif~~~~~p~yvYKlyPEGPIt~~lIr~mr~lwke~m~ll~r~~ 272 (431)
T COG4408 193 QHGIDVEPCESPLAAETRNITLYVHPPLFLNDFSLQAIFYPEQRPQYVYKLYPEGPITPALIRDMRGLWKEYMRLLNRLG 272 (431)
T ss_pred hcCCceEEcCChhhhhhcccceeecCcchhhhhHHHHHhCCcCCCceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999998887766532 23333444432211 13333322 24555689999999999
Q ss_pred CC
Q 012547 324 EE 325 (461)
Q Consensus 324 ~~ 325 (461)
.+
T Consensus 273 ve 274 (431)
T COG4408 273 VE 274 (431)
T ss_pred CC
Confidence 84
No 268
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.03 E-value=0.11 Score=47.69 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=29.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEec
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r 80 (461)
...+|.|||+|.+|...+..|.+. | ++|++++.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~-g-----a~V~VIsp 44 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDT-G-----AFVTVVSP 44 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEcC
Confidence 347899999999999999999988 8 99999953
No 269
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=95.00 E-value=0.13 Score=49.56 Aligned_cols=34 Identities=24% Similarity=0.227 Sum_probs=30.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.+|+|||+|.+|+.+|..|+.. |. .+++++|.+.
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~-Gv----g~i~lvD~D~ 62 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARS-GV----GNLKLVDFDV 62 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHc-CC----CeEEEEeCCE
Confidence 6899999999999999999999 83 5799999884
No 270
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=94.96 E-value=0.17 Score=49.28 Aligned_cols=35 Identities=31% Similarity=0.370 Sum_probs=30.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCe--eEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~--~V~l~~r~~ 82 (461)
.+||.|+|+|.+|.++|..|... |. . +|++++|+.
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~-G~----~~~~i~ivdr~g 61 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAA-GA----KPENIVVVDSKG 61 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHc-Cc----CcceEEEEeCCC
Confidence 36999999999999999999988 72 3 799999983
No 271
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=94.93 E-value=0.17 Score=49.74 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=31.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
..||+|||+|.+|+.++..|+.. |. .+++++|.+.-
T Consensus 32 ~~~VliiG~GglGs~va~~La~~-Gv----g~i~lvD~D~v 67 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAA-GV----GTLTLVDFDTV 67 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc-CC----CEEEEEcCCEE
Confidence 47899999999999999999999 83 68999988753
No 272
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=94.92 E-value=0.054 Score=43.40 Aligned_cols=35 Identities=26% Similarity=0.437 Sum_probs=32.2
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (461)
||+|||+|..|.-+|..|++. | .+|+++.+++.-.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~-g-----~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL-G-----KEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-T-----SEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh-C-----cEEEEEeccchhh
Confidence 699999999999999999998 7 8999999988655
No 273
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=94.91 E-value=0.084 Score=56.00 Aligned_cols=87 Identities=16% Similarity=0.187 Sum_probs=54.3
Q ss_pred CCceEEEECccHHHHHHHHH--HHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAM--LQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~--La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (461)
+++||+|||+|+.+++--.. +.+. -.+ +..++.|+|.++++.+.+. .+.+ +++...
T Consensus 2 ~~~KI~iIGgGSt~tp~~v~g~l~~~-e~l-~~~el~L~Did~~r~~~i~------~~~~------------~~v~~~-- 59 (442)
T COG1486 2 KKFKIVIIGGGSTYTPKLLLGDLART-EEL-PVRELALYDIDEERLKIIA------ILAK------------KLVEEA-- 59 (442)
T ss_pred CcceEEEECCCccccHHHHHHHHhcC-ccC-CcceEEEEeCCHHHHHHHH------HHHH------------HHHHhh--
Confidence 35799999999988764432 2322 112 2268999999988765321 1111 011110
Q ss_pred hccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhH
Q 012547 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTET 173 (461)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~ 173 (461)
|. ...+..++|.++|+++||+|+.++-...+
T Consensus 60 ---------------g~--------~~kv~~ttd~~eAl~gAdfVi~~~rvG~l 90 (442)
T COG1486 60 ---------------GA--------PVKVEATTDRREALEGADFVITQIRVGGL 90 (442)
T ss_pred ---------------CC--------CeEEEEecCHHHHhcCCCEEEEEEeeCCc
Confidence 00 01478899999999999999999865433
No 274
>PRK14982 acyl-ACP reductase; Provisional
Probab=94.90 E-value=0.1 Score=53.89 Aligned_cols=58 Identities=17% Similarity=0.229 Sum_probs=41.1
Q ss_pred hhHHhhHHHHHhhcCCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 24 SLEERLDELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
.+-+-++.-+.++|. +-..++|.|+|| |.||+.++..|+...| ..++++++|+++.++
T Consensus 137 ll~~~V~la~~~lg~-~l~~k~VLVtGAtG~IGs~lar~L~~~~g----v~~lilv~R~~~rl~ 195 (340)
T PRK14982 137 VICRQVEQNAPRLGI-DLSKATVAVVGATGDIGSAVCRWLDAKTG----VAELLLVARQQERLQ 195 (340)
T ss_pred HHHHHHHHhHHHhcc-CcCCCEEEEEccChHHHHHHHHHHHhhCC----CCEEEEEcCCHHHHH
Confidence 344455555666664 334478999999 8999999999975313 158999999876544
No 275
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=94.89 E-value=0.093 Score=56.15 Aligned_cols=92 Identities=20% Similarity=0.257 Sum_probs=63.2
Q ss_pred CCceEEEECc----cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchh
Q 012547 42 DPLRIVGVGA----GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV 117 (461)
Q Consensus 42 ~~mkI~IIGa----GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~ 117 (461)
.+.+|+|||+ |.+|..+...|.+. |+ . .+|+.++...+.+ .
T Consensus 6 ~p~siavvGaS~~~~~~g~~~~~~l~~~-gf-~--g~v~~Vnp~~~~i-----------------------------~-- 50 (447)
T TIGR02717 6 NPKSVAVIGASRDPGKVGYAIMKNLIEG-GY-K--GKIYPVNPKAGEI-----------------------------L-- 50 (447)
T ss_pred CCCEEEEEccCCCCCchHHHHHHHHHhC-CC-C--CcEEEECCCCCcc-----------------------------C--
Confidence 4678999999 88999999999887 72 0 2565554432211 0
Q ss_pred hhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEe
Q 012547 118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (461)
Q Consensus 118 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~t 197 (461)
++.+..++++.-...|+++++||+..+.++++++... . -..++.++
T Consensus 51 -----------------------------G~~~~~sl~~lp~~~Dlavi~vp~~~~~~~l~e~~~~-g----v~~~vi~s 96 (447)
T TIGR02717 51 -----------------------------GVKAYPSVLEIPDPVDLAVIVVPAKYVPQVVEECGEK-G----VKGAVVIT 96 (447)
T ss_pred -----------------------------CccccCCHHHCCCCCCEEEEecCHHHHHHHHHHHHhc-C----CCEEEEEC
Confidence 2233344555445679999999999999999998752 2 23566688
Q ss_pred ecCcc
Q 012547 198 KGVEA 202 (461)
Q Consensus 198 kGi~~ 202 (461)
.|+..
T Consensus 97 ~gf~e 101 (447)
T TIGR02717 97 AGFKE 101 (447)
T ss_pred CCccc
Confidence 88864
No 276
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=94.84 E-value=0.15 Score=52.56 Aligned_cols=35 Identities=29% Similarity=0.346 Sum_probs=31.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
..||.|||+|.+|+.+|..|+.. |. .+++++|.+.
T Consensus 24 ~~~VlVvG~GglGs~va~~La~a-Gv----g~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRA-GV----GKVTIVDRDY 58 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CC----CeEEEEeCCc
Confidence 36899999999999999999999 82 4899999975
No 277
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=94.72 E-value=0.13 Score=52.91 Aligned_cols=36 Identities=19% Similarity=0.157 Sum_probs=28.2
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
+++||+|+|+ |.-|.-+...|+.+ - ..++.+++.++
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~H-p----~ve~~~~ss~~ 37 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGH-P----DVELILISSRE 37 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcC-C----CeEEEEeechh
Confidence 4689999997 99999999999977 3 25666665544
No 278
>CHL00194 ycf39 Ycf39; Provisional
Probab=94.71 E-value=0.061 Score=54.27 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=31.7
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
|||.|.|+ |.+|+.++..|.+. | ++|++.+|+.+.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~-g-----~~V~~l~R~~~~ 36 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDE-G-----YQVRCLVRNLRK 36 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC-C-----CeEEEEEcChHH
Confidence 69999996 99999999999998 8 999999998643
No 279
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=94.68 E-value=0.11 Score=57.63 Aligned_cols=39 Identities=23% Similarity=0.362 Sum_probs=35.4
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
.++|.|+|.|.+|..++..|.+. | +++++++.|+++++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~-g-----~~vvvID~d~~~v~~ 438 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMAN-K-----MRITVLERDISAVNL 438 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhC-C-----CCEEEEECCHHHHHH
Confidence 46899999999999999999988 7 899999999987765
No 280
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=94.58 E-value=0.21 Score=49.61 Aligned_cols=148 Identities=19% Similarity=0.197 Sum_probs=86.1
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
+|||+|.|+ |.||..+...+.+. . +.+ +-.++|...... -+..+ .+.+.
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~-~----~~~L~aa~~~~~~~~~----------g~d~g-----------e~~g~--- 52 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEA-P----DLELVAAFDRPGSLSL----------GSDAG-----------ELAGL--- 52 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcC-C----CceEEEEEecCCcccc----------ccchh-----------hhccc---
Confidence 689999999 99999999999876 2 133 334555543110 00000 01110
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
+ .-.+.+++|+..+..++|++|=.+-+....+.++....+ +..+|.-|.|+
T Consensus 53 -~----------------------~~gv~v~~~~~~~~~~~DV~IDFT~P~~~~~~l~~~~~~------~~~lVIGTTGf 103 (266)
T COG0289 53 -G----------------------LLGVPVTDDLLLVKADADVLIDFTTPEATLENLEFALEH------GKPLVIGTTGF 103 (266)
T ss_pred -c----------------------ccCceeecchhhcccCCCEEEECCCchhhHHHHHHHHHc------CCCeEEECCCC
Confidence 0 013456677777788999999988777776666655432 34566677799
Q ss_pred ccccccccccCCHHHHHHhHhCCCCCcEEEEeCcchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEe
Q 012547 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWD 273 (461)
Q Consensus 201 ~~~~~~~~~~~~~se~i~~~lg~~~~~v~vlsGPn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~ 273 (461)
+.+. . +.+++..- .+.++..|||+.-+.- -.+.++...+.|. ++.+.+
T Consensus 104 ~~e~-----~----~~l~~~a~----~v~vv~a~NfSiGvnl----------l~~l~~~aak~l~--~~DiEI 151 (266)
T COG0289 104 TEEQ-----L----EKLREAAE----KVPVVIAPNFSLGVNL----------LFKLAEQAAKVLD--DYDIEI 151 (266)
T ss_pred CHHH-----H----HHHHHHHh----hCCEEEeccchHHHHH----------HHHHHHHHHHhcC--CCCEEe
Confidence 8762 1 23444321 2346778888542211 0235566777776 555443
No 281
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=94.57 E-value=0.045 Score=57.12 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=30.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.+|+|||+|.+|.++|..|++. | ++|++++++.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-g-----~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-G-----YQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeCCC
Confidence 4899999999999999999999 8 8999999875
No 282
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.56 E-value=0.11 Score=52.38 Aligned_cols=33 Identities=15% Similarity=0.189 Sum_probs=28.4
Q ss_pred CceEEEECccH-HHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 43 PLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 43 ~mkI~IIGaGa-mG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
-.+|+|||.|. +|..+|..|... | ..|+++.++
T Consensus 158 Gk~vvVIGrs~~VG~pla~lL~~~-g-----atVtv~~s~ 191 (286)
T PRK14175 158 GKNAVVIGRSHIVGQPVSKLLLQK-N-----ASVTILHSR 191 (286)
T ss_pred CCEEEEECCCchhHHHHHHHHHHC-C-----CeEEEEeCC
Confidence 36999999988 999999999987 6 788888654
No 283
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=94.51 E-value=0.045 Score=51.59 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=33.9
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
|||+|||| |..|+.|+.-..+. | |+|+.+.|++.++.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R-G-----HeVTAivRn~~K~~ 38 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR-G-----HEVTAIVRNASKLA 38 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC-C-----CeeEEEEeChHhcc
Confidence 89999997 99999999999999 8 99999999987653
No 284
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=94.50 E-value=0.26 Score=49.58 Aligned_cols=67 Identities=15% Similarity=0.144 Sum_probs=48.2
Q ss_pred cCcccccccchhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
.+|.++-.|-.-.-=+.-|+... .+...+++.|+|+|..|.+++..|++. |. .+|++++|+.+++++
T Consensus 100 ~~g~l~G~NTD~~Gf~~~L~~~~--~~~~~k~vlilGaGGaarAi~~aL~~~-g~----~~i~i~nR~~~ka~~ 166 (283)
T PRK14027 100 ATGHTTGHNTDVSGFGRGMEEGL--PNAKLDSVVQVGAGGVGNAVAYALVTH-GV----QKLQVADLDTSRAQA 166 (283)
T ss_pred CCCcEEEEcCCHHHHHHHHHhcC--cCcCCCeEEEECCcHHHHHHHHHHHHC-CC----CEEEEEcCCHHHHHH
Confidence 46777766655554444554311 122346899999999999999999988 72 589999999877664
No 285
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=94.39 E-value=0.17 Score=51.70 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=27.9
Q ss_pred HhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 157 av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
...++|++|+|+|...-.++..++.. . ++.||.++.-+
T Consensus 47 ~~~~~DvvFlalp~~~s~~~~~~~~~---~---g~~VIDlSadf 84 (313)
T PRK11863 47 LLNAADVAILCLPDDAAREAVALIDN---P---ATRVIDASTAH 84 (313)
T ss_pred hhcCCCEEEECCCHHHHHHHHHHHHh---C---CCEEEECChhh
Confidence 34679999999999987777777643 2 56788777433
No 286
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.38 E-value=0.17 Score=42.87 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=30.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
...+|.|||+|.+|..=+..|.+. | .+|++++.+.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~-g-----A~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEA-G-----AKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCC-T-----BEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEECCch
Confidence 446899999999999999999988 7 9999999885
No 287
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.33 E-value=0.18 Score=52.36 Aligned_cols=34 Identities=26% Similarity=0.304 Sum_probs=30.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.||.|||+|..|+.++..|+.. |. .+++++|.+.
T Consensus 29 ~~VlivG~GGlGs~~a~~La~~-Gv----g~i~lvD~D~ 62 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLAGA-GV----GHITIIDDDT 62 (355)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CC----CeEEEEeCCE
Confidence 6899999999999999999999 83 6899999885
No 288
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=94.32 E-value=0.18 Score=55.89 Aligned_cols=34 Identities=24% Similarity=0.278 Sum_probs=30.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.||.|+|+|..|+..|..|+.. |. .+++++|.+.
T Consensus 339 ~kVLIvGaGGLGs~VA~~La~~-GV----g~ItlVD~D~ 372 (664)
T TIGR01381 339 LKVLLLGAGTLGCNVARCLIGW-GV----RHITFVDNGK 372 (664)
T ss_pred CeEEEECCcHHHHHHHHHHHHc-CC----CeEEEEcCCE
Confidence 6899999999999999999998 83 5888988764
No 289
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=94.30 E-value=0.055 Score=56.38 Aligned_cols=34 Identities=24% Similarity=0.375 Sum_probs=31.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
|+|+|||+|.+|.+.|..|++. | ++|.+++++..
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~-g-----~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQA-G-----HEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-C-----CEEEEEeCCCc
Confidence 6899999999999999999998 8 89999999753
No 290
>PRK06153 hypothetical protein; Provisional
Probab=94.16 E-value=0.29 Score=51.29 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=30.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.+|+|||+|..|+.++..||+. |. .+++++|.+.
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~-GV----geI~LVD~D~ 210 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKT-PV----REIHLFDGDD 210 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHc-CC----CEEEEECCCE
Confidence 4799999999999999999999 82 5899998774
No 291
>PRK07236 hypothetical protein; Provisional
Probab=94.07 E-value=0.075 Score=55.11 Aligned_cols=38 Identities=18% Similarity=0.238 Sum_probs=33.6
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 40 ~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.-.+++|.|||+|.-|.++|..|++. | ++|+++.+.+.
T Consensus 3 ~~~~~~ViIVGaG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 40 (386)
T PRK07236 3 HMSGPRAVVIGGSLGGLFAALLLRRA-G-----WDVDVFERSPT 40 (386)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhC-C-----CCEEEEecCCC
Confidence 33457999999999999999999999 8 89999998764
No 292
>PRK06753 hypothetical protein; Provisional
Probab=94.07 E-value=0.063 Score=55.10 Aligned_cols=34 Identities=26% Similarity=0.512 Sum_probs=31.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
|+|.|||+|.-|.++|..|++. | ++|+++.+++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~-g-----~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQ-G-----HEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-C-----CcEEEEecCCc
Confidence 6899999999999999999999 8 99999998875
No 293
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=94.04 E-value=0.17 Score=51.39 Aligned_cols=44 Identities=18% Similarity=0.196 Sum_probs=35.0
Q ss_pred cCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 37 GKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 37 ~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
|-+...+-||+|||.|..|+--|+...-- | .+|++.+++.++++
T Consensus 162 GvpGV~~~kv~iiGGGvvgtnaAkiA~gl-g-----A~Vtild~n~~rl~ 205 (371)
T COG0686 162 GVPGVLPAKVVVLGGGVVGTNAAKIAIGL-G-----ADVTILDLNIDRLR 205 (371)
T ss_pred CCCCCCCccEEEECCccccchHHHHHhcc-C-----CeeEEEecCHHHHh
Confidence 34455567999999999999888877655 5 89999999976554
No 294
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=94.01 E-value=0.39 Score=49.76 Aligned_cols=97 Identities=11% Similarity=0.162 Sum_probs=59.5
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
+.+||+|||| |..|..+...|+.+ -.|.- .++.+++.... +- . . ..+.
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h-~~f~v-~~l~~~aS~~s-aG--------------k--------~-~~~~----- 52 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKE-TKFNI-AEVTLLSSKRS-AG--------------K--------T-VQFK----- 52 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHC-CCCCc-ccEEEEECccc-CC--------------C--------C-eeeC-----
Confidence 4589999998 99999999999964 32221 23555654421 11 0 0 0011
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEE-ecCHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKV-VTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~-t~dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
. ..+.+ ..|..+ +.+.|++|+|+|+..-+++...+.. . +..||.++.-
T Consensus 53 --~----------------------~~l~v~~~~~~~-~~~~Divf~a~~~~~s~~~~~~~~~---~---G~~VID~Ss~ 101 (347)
T PRK06728 53 --G----------------------REIIIQEAKINS-FEGVDIAFFSAGGEVSRQFVNQAVS---S---GAIVIDNTSE 101 (347)
T ss_pred --C----------------------cceEEEeCCHHH-hcCCCEEEECCChHHHHHHHHHHHH---C---CCEEEECchh
Confidence 0 01222 124433 5789999999999987777766543 3 5778887755
Q ss_pred C
Q 012547 200 V 200 (461)
Q Consensus 200 i 200 (461)
+
T Consensus 102 f 102 (347)
T PRK06728 102 Y 102 (347)
T ss_pred h
Confidence 4
No 295
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=93.97 E-value=0.45 Score=49.74 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=31.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
..+|.|||+|..|+.++..|+.. |. .+++++|.+.
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~-Gv----g~i~ivD~D~ 75 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASA-GV----GTITLIDDDT 75 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CC----CEEEEEeCCE
Confidence 36899999999999999999999 82 6899999885
No 296
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=93.86 E-value=0.21 Score=55.71 Aligned_cols=40 Identities=20% Similarity=0.424 Sum_probs=36.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
...+|.|+|.|.+|..+|..|.++ | .++++++.++++++.
T Consensus 399 ~~~~vII~G~Gr~G~~va~~L~~~-g-----~~vvvID~d~~~v~~ 438 (621)
T PRK03562 399 QQPRVIIAGFGRFGQIVGRLLLSS-G-----VKMTVLDHDPDHIET 438 (621)
T ss_pred ccCcEEEEecChHHHHHHHHHHhC-C-----CCEEEEECCHHHHHH
Confidence 347899999999999999999998 7 899999999988775
No 297
>PRK08163 salicylate hydroxylase; Provisional
Probab=93.70 E-value=0.089 Score=54.44 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=32.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
+++|.|||+|..|.++|..|++. | ++|+++.++++
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~-g-----~~v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQ-G-----IKVKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhC-C-----CcEEEEeeCcc
Confidence 47899999999999999999999 8 99999999864
No 298
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=93.68 E-value=0.22 Score=47.66 Aligned_cols=32 Identities=28% Similarity=0.360 Sum_probs=29.5
Q ss_pred EEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 46 IVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 46 I~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
|+|+|+ |..|..++..|.+. + ++|++..|+..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~-~-----~~V~~l~R~~~ 33 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA-G-----FSVRALVRDPS 33 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT-T-----GCEEEEESSSH
T ss_pred CEEECCccHHHHHHHHHHHhC-C-----CCcEEEEeccc
Confidence 789997 99999999999988 7 99999999974
No 299
>PRK08223 hypothetical protein; Validated
Probab=93.67 E-value=0.45 Score=48.04 Aligned_cols=38 Identities=18% Similarity=0.110 Sum_probs=32.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
.||.|||+|.+|+.++..|+.. |. .+++++|.+.=...
T Consensus 28 s~VlIvG~GGLGs~va~~LA~a-GV----G~i~lvD~D~Ve~S 65 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARL-GI----GKFTIADFDVFELR 65 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHh-CC----CeEEEEeCCCcchh
Confidence 6899999999999999999999 83 68999988753333
No 300
>PRK06349 homoserine dehydrogenase; Provisional
Probab=93.65 E-value=0.27 Score=52.25 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.2
Q ss_pred CceEEEECccHHHHHHHHHHHHh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDS 65 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~ 65 (461)
++||+|+|+|.+|..++..|.++
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~ 25 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEEN 25 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHh
Confidence 47999999999999999888654
No 301
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=93.64 E-value=0.77 Score=47.94 Aligned_cols=35 Identities=26% Similarity=0.296 Sum_probs=31.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
..||.|+|+|..|+.++..|+.. |. .+++++|++.
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La~~-Gv----g~i~lvD~d~ 169 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLAAA-GV----GTLGIVDHDV 169 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHHHc-CC----CeEEEEeCCE
Confidence 36899999999999999999999 82 5899999884
No 302
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=93.64 E-value=0.43 Score=49.40 Aligned_cols=39 Identities=10% Similarity=0.061 Sum_probs=28.9
Q ss_pred HHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 156 EAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 156 ~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
+++.++|+||+|+|+..-.++..++.. . +..||.++.-+
T Consensus 65 ~~~~~~D~vf~a~p~~~s~~~~~~~~~---~---g~~VIDlS~~f 103 (344)
T PLN02383 65 DSFDGVDIALFSAGGSISKKFGPIAVD---K---GAVVVDNSSAF 103 (344)
T ss_pred HHHcCCCEEEECCCcHHHHHHHHHHHh---C---CCEEEECCchh
Confidence 346789999999999988877776533 2 56788877444
No 303
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=93.57 E-value=0.57 Score=45.89 Aligned_cols=37 Identities=24% Similarity=0.300 Sum_probs=31.2
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
||.|||+|..|+.++..|+.. |. .+++++|.+.=...
T Consensus 1 kVlvvG~GGlG~eilk~La~~-Gv----g~i~ivD~D~Ve~s 37 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM-GF----GQIHVIDMDTIDVS 37 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CC----CeEEEEeCCEEcch
Confidence 689999999999999999999 83 68999998763333
No 304
>PRK06847 hypothetical protein; Provisional
Probab=93.54 E-value=0.098 Score=53.63 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=32.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
++++|+|||+|.-|.++|..|++. | ++|+++.++.+
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~-g-----~~v~v~E~~~~ 38 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRA-G-----IAVDLVEIDPE 38 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhC-C-----CCEEEEecCCC
Confidence 357899999999999999999998 8 89999998764
No 305
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=93.54 E-value=0.11 Score=51.81 Aligned_cols=57 Identities=25% Similarity=0.253 Sum_probs=45.4
Q ss_pred hHHhhHHHHHhhcCCC---CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 25 LEERLDELRRLMGKAE---GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 25 ~~~~~~~~~~~~~~~~---~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
.++|.+...+++|... -...+|+|+|+|.+|+.+|..|++. |. .+++++|.+.-...
T Consensus 9 ~~~rf~R~~~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~-GV----g~itLiD~D~V~~s 68 (268)
T PRK15116 9 WRQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALART-GI----GAITLIDMDDVCVT 68 (268)
T ss_pred HHHHHhhHHHHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHc-CC----CEEEEEeCCEeccc
Confidence 4578888888988532 2347899999999999999999999 83 68999998754333
No 306
>PRK10206 putative oxidoreductase; Provisional
Probab=93.52 E-value=0.3 Score=50.27 Aligned_cols=48 Identities=13% Similarity=0.104 Sum_probs=33.4
Q ss_pred EEecCHHHHhc--CCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccc
Q 012547 149 KVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 149 ~~t~dl~~av~--~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
.+.+|.++.+. +.|+|++|+|+....++..+... . +.. |.|-|-+...
T Consensus 51 ~~~~~~~ell~~~~iD~V~I~tp~~~H~~~~~~al~---a---Gkh-Vl~EKPla~~ 100 (344)
T PRK10206 51 HFTSDLDEVLNDPDVKLVVVCTHADSHFEYAKRALE---A---GKN-VLVEKPFTPT 100 (344)
T ss_pred cccCCHHHHhcCCCCCEEEEeCCchHHHHHHHHHHH---c---CCc-EEEecCCcCC
Confidence 34577888775 57999999999988777766543 2 333 4468877654
No 307
>PRK07411 hypothetical protein; Validated
Probab=93.49 E-value=0.33 Score=51.04 Aligned_cols=39 Identities=21% Similarity=0.213 Sum_probs=32.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
..||.|||+|..|+.+|..|+.. |. ..++++|.+.-...
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~-Gv----g~l~lvD~D~ve~s 76 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAA-GI----GRIGIVDFDVVDSS 76 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHc-CC----CEEEEECCCEeccc
Confidence 36899999999999999999999 83 68999988753333
No 308
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=93.48 E-value=0.32 Score=48.73 Aligned_cols=66 Identities=18% Similarity=0.150 Sum_probs=45.9
Q ss_pred cCcccccccchhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
.+|-+|-.|-.-.-=+.-|+. .+... ..++.|+|+|..+.+++..|++. | ..+|++++|+.++++.
T Consensus 96 ~~g~l~G~NTD~~Gf~~~L~~-~~~~~--~~~vlilGaGGaarAi~~aL~~~-g----~~~i~i~nR~~~~a~~ 161 (272)
T PRK12550 96 TDGHLKAYNTDYIAIAKLLAS-YQVPP--DLVVALRGSGGMAKAVAAALRDA-G----FTDGTIVARNEKTGKA 161 (272)
T ss_pred eCCEEEEEecCHHHHHHHHHh-cCCCC--CCeEEEECCcHHHHHHHHHHHHC-C----CCEEEEEeCCHHHHHH
Confidence 456565556554444444543 23322 24899999999999999999987 7 1479999999876553
No 309
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=93.47 E-value=0.1 Score=52.04 Aligned_cols=35 Identities=26% Similarity=0.318 Sum_probs=30.0
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
.+|+|||+|.-|+++|..|+++ | ++|.++.+++..
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~-G-----~~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARA-G-----IDVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHT-T-----CEEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhc-c-----cccccchhcccc
Confidence 4799999999999999999999 8 999999998653
No 310
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=93.31 E-value=0.52 Score=48.81 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=29.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDR 87 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~-V~l~~r~~~~~~~ 87 (461)
++.||+|||+ .||...+..+... .. +.+ |-+++++.+++++
T Consensus 2 ~~~rVgViG~-~~G~~h~~al~~~-~~---~~eLvaV~d~~~erA~~ 43 (343)
T TIGR01761 2 DVQSVVVCGT-RFGQFYLAAFAAA-PE---RFELAGILAQGSERSRA 43 (343)
T ss_pred CCcEEEEEeH-HHHHHHHHHHHhC-CC---CcEEEEEEcCCHHHHHH
Confidence 4579999999 6899888888765 20 033 5578888776553
No 311
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=93.28 E-value=0.5 Score=48.73 Aligned_cols=35 Identities=34% Similarity=0.372 Sum_probs=25.7
Q ss_pred HhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEe
Q 012547 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (461)
Q Consensus 157 av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~t 197 (461)
...++|+||+|+|+....++.+.+.. . +..+|.++
T Consensus 70 ~~~~~DvVf~a~p~~~s~~~~~~~~~---~---G~~VIDls 104 (341)
T TIGR00978 70 ASKDVDIVFSALPSEVAEEVEPKLAE---A---GKPVFSNA 104 (341)
T ss_pred HhccCCEEEEeCCHHHHHHHHHHHHH---C---CCEEEECC
Confidence 45789999999999988887765533 2 45566655
No 312
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=93.27 E-value=0.55 Score=48.53 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=27.9
Q ss_pred CceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIG-aGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
++||+|+| .|.+|..+...|... . ..++..+.++..
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~-p----~~el~~~~~s~~ 39 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANH-P----WFEVTALAASER 39 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcC-C----CceEEEEEcChh
Confidence 47999998 699999999999866 3 247777755543
No 313
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=93.23 E-value=0.11 Score=53.77 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=32.2
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 41 ~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
....+|.|||+|..|.++|..|++. | .+|.++++.+
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~-G-----~~v~liE~~~ 39 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADA-G-----LSVALVEGRE 39 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcC-C-----CEEEEEeCCC
Confidence 3446899999999999999999999 8 8999999875
No 314
>PRK06270 homoserine dehydrogenase; Provisional
Probab=93.17 E-value=0.49 Score=48.81 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=20.4
Q ss_pred CceEEEECccHHHHHHHHHHHHh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDS 65 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~ 65 (461)
.+||+|+|+|.+|..++..|.+.
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHh
Confidence 47999999999999999998754
No 315
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=93.10 E-value=0.53 Score=47.52 Aligned_cols=38 Identities=16% Similarity=0.117 Sum_probs=32.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
.||.|+|+|..|+.+|..|+.. |. ..++++|.+.-...
T Consensus 20 s~VLIvG~gGLG~EiaKnLala-GV----g~itI~D~d~ve~s 57 (286)
T cd01491 20 SNVLISGLGGLGVEIAKNLILA-GV----KSVTLHDTKPCSWS 57 (286)
T ss_pred CcEEEEcCCHHHHHHHHHHHHc-CC----CeEEEEcCCccchh
Confidence 5899999999999999999999 83 68999998753333
No 316
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=93.00 E-value=0.6 Score=48.23 Aligned_cols=96 Identities=15% Similarity=0.079 Sum_probs=59.3
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
+.+||+|||| |..|..+...|++. . + |..++..+..+.. +- . . ..+.+
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~-~-h-P~~~l~~laS~~s-aG--------------~--------~-~~~~~---- 51 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAER-Q-F-PVGELYALASEES-AG--------------E--------T-LRFGG---- 51 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcC-C-C-CceEEEEEEccCc-CC--------------c--------e-EEECC----
Confidence 5689999998 99999999999984 2 1 1256666644421 11 0 0 00110
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHH-HhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeec
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQE-AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~-av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkG 199 (461)
..+.+. ++++ ...++|++|+|+|...-.+++.++.. . +..||.++.-
T Consensus 52 -------------------------~~~~v~-~~~~~~~~~~Dvvf~a~p~~~s~~~~~~~~~---~---g~~VIDlS~~ 99 (336)
T PRK08040 52 -------------------------KSVTVQ-DAAEFDWSQAQLAFFVAGREASAAYAEEATN---A---GCLVIDSSGL 99 (336)
T ss_pred -------------------------cceEEE-eCchhhccCCCEEEECCCHHHHHHHHHHHHH---C---CCEEEECChH
Confidence 012332 2222 23689999999999877777766643 2 5778887754
Q ss_pred C
Q 012547 200 V 200 (461)
Q Consensus 200 i 200 (461)
+
T Consensus 100 f 100 (336)
T PRK08040 100 F 100 (336)
T ss_pred h
Confidence 4
No 317
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.95 E-value=0.27 Score=49.53 Aligned_cols=29 Identities=21% Similarity=0.358 Sum_probs=25.4
Q ss_pred ceEEEECccHH-HHHHHHHHHHhcCCCCCCeeEEEE
Q 012547 44 LRIVGVGAGAW-GSVFTAMLQDSYGYLRDKVLIRIW 78 (461)
Q Consensus 44 mkI~IIGaGam-G~alA~~La~~~G~~~~~~~V~l~ 78 (461)
.+|+|||.|.. |..+|..|... | ..|+++
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~-~-----atVt~~ 188 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQA-G-----ATVTIC 188 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHC-C-----CEEEEe
Confidence 68999999888 99999999887 6 788876
No 318
>PRK05868 hypothetical protein; Validated
Probab=92.94 E-value=0.12 Score=53.57 Aligned_cols=36 Identities=19% Similarity=0.138 Sum_probs=32.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
|++|.|||+|..|.++|..|++. | ++|+++.+.++.
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~-G-----~~v~viE~~~~~ 36 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRH-G-----YSVTMVERHPGL 36 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC-C-----CCEEEEcCCCCC
Confidence 46899999999999999999999 8 999999988653
No 319
>PRK07588 hypothetical protein; Provisional
Probab=92.93 E-value=0.12 Score=53.57 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=31.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
|+|.|||+|..|.++|..|++. | ++|+++.+.++
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRY-G-----HEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHC-C-----CceEEEeCCCC
Confidence 6899999999999999999999 8 89999998764
No 320
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=92.86 E-value=0.39 Score=49.56 Aligned_cols=36 Identities=17% Similarity=0.141 Sum_probs=27.4
Q ss_pred HhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEee
Q 012547 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 157 av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tk 198 (461)
.+.++|++|+|+|+....+++.++. .. +..||+++.
T Consensus 58 ~~~~~D~v~~a~g~~~s~~~a~~~~---~~---G~~VID~ss 93 (339)
T TIGR01296 58 SFEGIDIALFSAGGSVSKEFAPKAA---KC---GAIVIDNTS 93 (339)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHH---HC---CCEEEECCH
Confidence 4588999999999998888777654 33 567776664
No 321
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=92.81 E-value=0.36 Score=41.49 Aligned_cols=48 Identities=25% Similarity=0.353 Sum_probs=33.5
Q ss_pred EEecCHHHHhc--CCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 149 KVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 149 ~~t~dl~~av~--~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
..++|+++.+. +.|+||-|+++..+.+.+.++ +.. +..||++.||.-.
T Consensus 46 ~~~~~~~~~~~~~~~dvvVE~t~~~~~~~~~~~~---L~~---G~~VVt~nk~ala 95 (117)
T PF03447_consen 46 AFTTDLEELIDDPDIDVVVECTSSEAVAEYYEKA---LER---GKHVVTANKGALA 95 (117)
T ss_dssp CEESSHHHHHTHTT-SEEEE-SSCHHHHHHHHHH---HHT---TCEEEES-HHHHH
T ss_pred cccCCHHHHhcCcCCCEEEECCCchHHHHHHHHH---HHC---CCeEEEECHHHhh
Confidence 45678888777 899999999988877765554 444 5788999988544
No 322
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=92.77 E-value=0.72 Score=48.54 Aligned_cols=36 Identities=25% Similarity=0.231 Sum_probs=31.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
..||.|||+|..|+.+|..|+.. |. .+++++|.+.-
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~-Gv----g~i~lvD~D~v 77 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAA-GV----GTLGIVEFDVV 77 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHc-CC----CeEEEECCCEe
Confidence 36899999999999999999999 82 58999988753
No 323
>PRK07538 hypothetical protein; Provisional
Probab=92.70 E-value=0.13 Score=53.79 Aligned_cols=34 Identities=15% Similarity=0.390 Sum_probs=31.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
|+|.|||+|.-|.++|..|++. | ++|+++.+.++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQR-G-----IEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-C-----CcEEEEEcCCc
Confidence 6899999999999999999999 8 89999998764
No 324
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=92.70 E-value=1.1 Score=45.49 Aligned_cols=51 Identities=20% Similarity=0.267 Sum_probs=36.2
Q ss_pred eEEecCHHHHhcC--CCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccc
Q 012547 148 LKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (461)
Q Consensus 148 i~~t~dl~~av~~--aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~ 203 (461)
+.+..+++++-.. .|+.+++||...+.+++++.... + -..+|.++.|+...
T Consensus 51 ~~~y~sv~dlp~~~~~DlAvi~vp~~~v~~~l~e~~~~---g--vk~avI~s~Gf~~~ 103 (291)
T PRK05678 51 LPVFNTVAEAVEATGANASVIYVPPPFAADAILEAIDA---G--IDLIVCITEGIPVL 103 (291)
T ss_pred eeccCCHHHHhhccCCCEEEEEcCHHHHHHHHHHHHHC---C--CCEEEEECCCCCHH
Confidence 3444566665554 79999999999999999997752 1 23456678888643
No 325
>PRK07877 hypothetical protein; Provisional
Probab=92.61 E-value=0.26 Score=55.76 Aligned_cols=52 Identities=27% Similarity=0.263 Sum_probs=38.0
Q ss_pred HHhhHHHHHhhcCCCCC---CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 26 EERLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 26 ~~~~~~~~~~~~~~~~~---~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
++|.+.=+.++|..+-. ..||+|+|+| +|+..|..|+.. |.+ .+++++|.+.
T Consensus 87 ~~r~~Rn~~~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~Lara-Gvv---G~l~lvD~D~ 141 (722)
T PRK07877 87 AVRLDRNRNKITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAE-GLC---GELRLADFDT 141 (722)
T ss_pred HHHhhchhhhCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHc-cCC---CeEEEEcCCE
Confidence 46666555565443322 3689999999 999999999998 711 3788888875
No 326
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=92.57 E-value=0.47 Score=48.42 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=27.1
Q ss_pred HHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEee
Q 012547 156 EAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 156 ~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tk 198 (461)
+...++|++|+|+|...-.+++..+.. . +..||.++.
T Consensus 45 ~~~~~~D~vFlalp~~~s~~~~~~~~~---~---g~~VIDlSa 81 (310)
T TIGR01851 45 KLLNAADVAILCLPDDAAREAVSLVDN---P---NTCIIDAST 81 (310)
T ss_pred HhhcCCCEEEECCCHHHHHHHHHHHHh---C---CCEEEECCh
Confidence 445789999999999987777766532 2 567887663
No 327
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=92.55 E-value=0.21 Score=39.19 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=26.8
Q ss_pred EECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 48 GVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 48 IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
|||+|.-|.+.|..|++. | ++|+++.++..
T Consensus 1 IiGaG~sGl~aA~~L~~~-g-----~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-G-----YRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-T-----SEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHC-C-----CcEEEEecCcc
Confidence 899999999999999999 8 89999998863
No 328
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=92.53 E-value=0.57 Score=47.85 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=32.6
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhh
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (461)
||.|||+|.+|+.++..|+.. |. .+++++|.+.-....++
T Consensus 1 kVlIVGaGGlG~EiaKnLal~-Gv----g~ItIvD~D~Ve~sNLn 40 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLT-GF----GEIHIIDLDTIDLSNLN 40 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHh-cC----CeEEEEcCCCcchhhcC
Confidence 689999999999999999999 83 68999998764443333
No 329
>PRK06185 hypothetical protein; Provisional
Probab=92.51 E-value=0.16 Score=52.83 Aligned_cols=38 Identities=21% Similarity=0.327 Sum_probs=33.0
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 40 ~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
+.....|+|||+|..|.++|..|++. | ++|+++++++.
T Consensus 3 ~~~~~dV~IvGgG~~Gl~~A~~La~~-G-----~~v~liE~~~~ 40 (407)
T PRK06185 3 EVETTDCCIVGGGPAGMMLGLLLARA-G-----VDVTVLEKHAD 40 (407)
T ss_pred ccccccEEEECCCHHHHHHHHHHHhC-C-----CcEEEEecCCc
Confidence 33446899999999999999999999 8 89999998753
No 330
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=92.43 E-value=0.19 Score=51.58 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=31.8
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.+++|+|||+|.+|.+.|..|++. | .+|++++++.
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~-G-----~~V~vie~~~ 37 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAER-G-----ADVTVLEAGE 37 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHc-C-----CEEEEEecCc
Confidence 457899999999999999999999 8 8999998776
No 331
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=92.31 E-value=0.47 Score=38.66 Aligned_cols=34 Identities=26% Similarity=0.390 Sum_probs=29.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEec
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r 80 (461)
..++++|+|+|.+|..++..+... | ..+|.+|+|
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~-~----~~~v~v~~r 55 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADE-G----GKKVVLCDR 55 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-C----CCEEEEEcC
Confidence 346899999999999999999987 4 268999998
No 332
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=92.28 E-value=0.2 Score=50.02 Aligned_cols=31 Identities=26% Similarity=0.303 Sum_probs=29.5
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
.|+|||+|..|.++|..|++. | ++|++++++
T Consensus 1 DvvIIGaGi~G~~~A~~La~~-G-----~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARR-G-----HSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHT-T-----SEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHC-C-----CeEEEEeec
Confidence 489999999999999999999 8 999999998
No 333
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=92.24 E-value=0.16 Score=52.45 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=31.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.+|.|||+|..|.++|..|++. | .+|+++++++.
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~-G-----~~v~liE~~~~ 41 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARA-G-----ASVALVAPEPP 41 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcC-C-----CeEEEEeCCCC
Confidence 5799999999999999999998 8 89999998753
No 334
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=92.18 E-value=0.17 Score=53.01 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=31.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~-~V~l~~r~~~ 83 (461)
|||+|||+|.-|.++|..|++. | + +|+++.++++
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~-g-----~~~v~v~Er~~~ 35 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKH-S-----HLNVQLFEAAPA 35 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhc-C-----CCCEEEEecCCc
Confidence 6899999999999999999998 7 5 8999999865
No 335
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=92.14 E-value=1.1 Score=42.95 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=30.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
..||.|||+|.+|..-+..|.+. | .+|++++.+.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~-g-----a~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKA-G-----AQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC-C-----CEEEEEcCCC
Confidence 35899999999999999999998 8 8999998764
No 336
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=91.99 E-value=0.91 Score=49.44 Aligned_cols=39 Identities=18% Similarity=0.380 Sum_probs=32.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
..|+.|+|+|.+|...+..+..- | ..|++++++.++.+.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~l-G-----A~V~v~d~~~~rle~ 202 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSL-G-----AIVRAFDTRPEVKEQ 202 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHH
Confidence 47999999999999988887776 7 789999999876553
No 337
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=91.95 E-value=0.18 Score=52.52 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=31.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
.+.|+|||+|..|.++|..|++. | ++|+++.+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~-G-----~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARA-G-----LDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhC-C-----CcEEEEccC
Confidence 46799999999999999999999 8 999999997
No 338
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=91.85 E-value=0.22 Score=51.89 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=32.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.++|.|||+|.-|.++|..|++. | ++|+++.+.+.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 52 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDS-G-----LRIALIEAQPA 52 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcC-C-----CEEEEEecCCc
Confidence 46899999999999999999999 8 99999998764
No 339
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.67 E-value=0.62 Score=46.96 Aligned_cols=32 Identities=28% Similarity=0.330 Sum_probs=26.7
Q ss_pred CceEEEECccH-HHHHHHHHHHHhcCCCCCCeeEEEEec
Q 012547 43 PLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (461)
Q Consensus 43 ~mkI~IIGaGa-mG~alA~~La~~~G~~~~~~~V~l~~r 80 (461)
-++|+|||-|. .|..+|..|... | ..|+++.+
T Consensus 159 Gk~vvViGrs~iVG~Pla~lL~~~-~-----atVtv~hs 191 (285)
T PRK10792 159 GLNAVVVGASNIVGRPMSLELLLA-G-----CTVTVCHR 191 (285)
T ss_pred CCEEEEECCCcccHHHHHHHHHHC-C-----CeEEEEEC
Confidence 36899999888 999999999877 6 78888743
No 340
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.62 E-value=0.48 Score=47.77 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=29.2
Q ss_pred CCceEEEECccH-HHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 42 DPLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 42 ~~mkI~IIGaGa-mG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
.-++|+|||+|. .|.++|..|... | ..|+++.|.
T Consensus 158 ~Gk~vvViG~gg~vGkpia~~L~~~-g-----atVtv~~~~ 192 (283)
T PRK14192 158 AGKHAVVVGRSAILGKPMAMMLLNA-N-----ATVTICHSR 192 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhC-C-----CEEEEEeCC
Confidence 336899999998 999999999988 7 789988763
No 341
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=91.59 E-value=0.54 Score=48.21 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=34.0
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
..|+|+|-|| |.+|+.+...|.++ | |.|....|+++.
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~r-G-----Y~V~gtVR~~~~ 42 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSR-G-----YTVRGTVRDPED 42 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhC-C-----CEEEEEEcCcch
Confidence 5689999997 99999999999999 8 899999999875
No 342
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=91.57 E-value=1.3 Score=44.55 Aligned_cols=107 Identities=12% Similarity=0.144 Sum_probs=50.5
Q ss_pred hhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhccccc
Q 012547 35 LMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYL 114 (461)
Q Consensus 35 ~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l 114 (461)
+-......+.||++||+|.+-.+.-...... |. +..|.-+|++++.++.. ++ +++..
T Consensus 113 l~~~~~~~p~rVaFIGSGPLPlT~i~la~~~-~~---~~~v~~iD~d~~A~~~a--~~---lv~~~-------------- 169 (276)
T PF03059_consen 113 LRIHAGDPPSRVAFIGSGPLPLTSIVLAKQH-GP---GARVHNIDIDPEANELA--RR---LVASD-------------- 169 (276)
T ss_dssp HTT--TT---EEEEE---SS-HHHHHHH--H-TT-----EEEEEESSHHHHHHH--HH---HHH----------------
T ss_pred HhhcCCcccceEEEEcCCCcchHHHHHHHHh-CC---CCeEEEEeCCHHHHHHH--HH---HHhhc--------------
Confidence 3333333567999999999987755444333 30 15688899998765531 11 12210
Q ss_pred chhhhhccCCccchhhhhhhcccccCCCCCCCCeEE-ecCH---HHHhcCCCEEEEcCCch----hHHHHHHHHHHHhhc
Q 012547 115 KYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKV-VTNL---QEAVWDADIVINGLPST----ETKEVFEEISRYWKE 186 (461)
Q Consensus 115 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~-t~dl---~~av~~aDiIIiaVps~----~~~~vl~~i~~~l~~ 186 (461)
.++ .+ .+.+ +.|. ...+.++|+|++|--.. ...++++.+.+++++
T Consensus 170 ~~L----~~-----------------------~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ 222 (276)
T PF03059_consen 170 LGL----SK-----------------------RMSFITADVLDVTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAP 222 (276)
T ss_dssp -HH-----S-----------------------SEEEEES-GGGG-GG----SEEEE-TT-S----SHHHHHHHHHHHS-T
T ss_pred ccc----cC-----------------------CeEEEecchhccccccccCCEEEEhhhcccccchHHHHHHHHHhhCCC
Confidence 011 01 1222 2222 22256889999998766 899999999999987
Q ss_pred cCCCCEEE
Q 012547 187 RITVPVII 194 (461)
Q Consensus 187 ~~~~~iII 194 (461)
++.++
T Consensus 223 ---ga~l~ 227 (276)
T PF03059_consen 223 ---GARLV 227 (276)
T ss_dssp ---TSEEE
T ss_pred ---CcEEE
Confidence 56443
No 343
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=91.38 E-value=0.6 Score=47.26 Aligned_cols=41 Identities=24% Similarity=0.314 Sum_probs=32.6
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhh
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATA 90 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~ 90 (461)
||.|||+|..|+.++..|+.. |. .+++++|.+.=....++.
T Consensus 1 kVlVVGaGGlG~eilknLal~-Gv----g~I~IvD~D~Ve~SNLnR 41 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALS-GF----RNIHVIDMDTIDVSNLNR 41 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CC----CeEEEECCCEecccccCc
Confidence 689999999999999999999 83 589999877543443433
No 344
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=91.26 E-value=0.27 Score=51.27 Aligned_cols=34 Identities=26% Similarity=0.446 Sum_probs=31.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.+|.|||+|..|.+.|..|++. | ++|+++.+.+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~-G-----~~v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKA-G-----IDNVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHC-C-----CCEEEEECCCC
Confidence 5799999999999999999999 8 99999998874
No 345
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.22 E-value=0.5 Score=49.89 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=30.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.+|.|||.|.+|.++|..|.+. | ++|+.++++.+
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~-G-----~~V~g~D~~~~ 37 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQK-G-----VYVIGVDKSLE 37 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHC-C-----CEEEEEeCCcc
Confidence 5899999999999999999988 8 89999998764
No 346
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=91.19 E-value=0.25 Score=50.52 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=29.9
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.|+|||+|.+|+++|..|++. | ++|++++++.
T Consensus 5 dv~IIGgGi~G~s~A~~L~~~-g-----~~V~lie~~~ 36 (376)
T PRK11259 5 DVIVIGLGSMGSAAGYYLARR-G-----LRVLGLDRFM 36 (376)
T ss_pred cEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeccc
Confidence 599999999999999999999 8 8999999875
No 347
>PRK07045 putative monooxygenase; Reviewed
Probab=91.18 E-value=0.28 Score=50.76 Aligned_cols=37 Identities=22% Similarity=0.448 Sum_probs=33.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
.+++|.|||+|..|.++|..|++. | .+|+++.+.++.
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~-G-----~~v~v~E~~~~~ 40 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGAR-G-----HSVTVVERAARN 40 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhc-C-----CcEEEEeCCCcc
Confidence 446899999999999999999999 8 899999988753
No 348
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=91.05 E-value=0.44 Score=47.54 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=37.1
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhh
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (461)
+++++.|-|| +.+|-.+|..||++ | ++|.+++|++++++++.
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~-g-----~~liLvaR~~~kL~~la 47 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARR-G-----YNLILVARREDKLEALA 47 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHC-C-----CEEEEEeCcHHHHHHHH
Confidence 4467999997 99999999999999 8 99999999999887644
No 349
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=90.98 E-value=0.28 Score=50.33 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=29.2
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.|+|||+|.+|.+.|..|++. | .+|+++++..
T Consensus 2 dvvIIGaGi~G~s~A~~La~~-g-----~~V~l~e~~~ 33 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKH-G-----KKTLLLEQFD 33 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeccC
Confidence 589999999999999999999 8 8999998853
No 350
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=90.97 E-value=1.3 Score=43.84 Aligned_cols=48 Identities=25% Similarity=0.276 Sum_probs=36.5
Q ss_pred ecCHHHHhc--CCCEEEEcC--CchhHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 151 VTNLQEAVW--DADIVINGL--PSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 151 t~dl~~av~--~aDiIIiaV--ps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
..|+.++++ ++|++|=.. |--+.+++++.+..+.+ +.+|..++|-.+.
T Consensus 95 ~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~----~PIIFaLSNPt~~ 146 (254)
T cd00762 95 SGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINE----RPVIFALSNPTSK 146 (254)
T ss_pred cCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCC----CCEEEECCCcCCc
Confidence 368999999 899877543 44689999999998765 4678888877653
No 351
>PRK10537 voltage-gated potassium channel; Provisional
Probab=90.84 E-value=1.8 Score=45.72 Aligned_cols=33 Identities=9% Similarity=-0.016 Sum_probs=28.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
+..|.|+|.|.+|..++..|.+. | .+|.+++.+
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~-g-----~~vvVId~d 272 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQR-G-----QAVTVIVPL 272 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHC-C-----CCEEEEECc
Confidence 34699999999999999999887 7 788888865
No 352
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=90.82 E-value=0.29 Score=51.31 Aligned_cols=34 Identities=26% Similarity=0.405 Sum_probs=31.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
++|.|||+|.-|++.|..|++. | ++|.++++...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~-G-----~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASA-G-----IQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhC-C-----CcEEEEecCCC
Confidence 5899999999999999999999 8 89999998753
No 353
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=90.82 E-value=1.9 Score=38.87 Aligned_cols=36 Identities=33% Similarity=0.510 Sum_probs=24.9
Q ss_pred CHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEE
Q 012547 153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL 196 (461)
Q Consensus 153 dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~ 196 (461)
|+++++++||+|+.++....+ ++ ..++++ +++++.+
T Consensus 64 ~l~~~v~~ADIVvsAtg~~~~---i~--~~~ikp---Ga~Vidv 99 (140)
T cd05212 64 QLQSKVHDADVVVVGSPKPEK---VP--TEWIKP---GATVINC 99 (140)
T ss_pred CHHHHHhhCCEEEEecCCCCc---cC--HHHcCC---CCEEEEc
Confidence 456778999999999987633 21 245676 6777743
No 354
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=90.77 E-value=0.37 Score=51.62 Aligned_cols=38 Identities=24% Similarity=0.370 Sum_probs=33.1
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 40 ~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
+..++.|.|||+|.-|++.|..|++. | .+|.++++...
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~-G-----~~VlllEr~~~ 73 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKG-G-----IETFLIERKLD 73 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhC-C-----CcEEEEecCCC
Confidence 34457899999999999999999999 8 89999998753
No 355
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=90.76 E-value=1.5 Score=45.26 Aligned_cols=38 Identities=18% Similarity=0.289 Sum_probs=30.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
.+|+|+|+|..|+ +|..+|++.| .+|+.++|++++.+.
T Consensus 168 ~~V~I~G~GGlGh-~avQ~Aka~g-----a~Via~~~~~~K~e~ 205 (339)
T COG1064 168 KWVAVVGAGGLGH-MAVQYAKAMG-----AEVIAITRSEEKLEL 205 (339)
T ss_pred CEEEEECCcHHHH-HHHHHHHHcC-----CeEEEEeCChHHHHH
Confidence 6899999998885 5666666437 899999999987653
No 356
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=90.71 E-value=0.31 Score=52.34 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=31.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.++|+|||||.-|.+.|..|.+. | ++|+++.++.+
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~-G-----~~v~vfE~~~~ 44 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRRE-G-----HTVVVFEREKQ 44 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhc-C-----CeEEEEecCCC
Confidence 47899999999999999999999 8 89999998764
No 357
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=90.62 E-value=0.32 Score=50.47 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=30.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.+|.|||+|..|.++|..|++. | ++|+++++.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~-G-----~~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQ-G-----RSVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhC-C-----CcEEEEcCCC
Confidence 4799999999999999999999 8 9999999764
No 358
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=90.61 E-value=1.1 Score=46.76 Aligned_cols=38 Identities=24% Similarity=0.226 Sum_probs=27.9
Q ss_pred HhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCC--CEEEEEeecC
Q 012547 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITV--PVIISLAKGV 200 (461)
Q Consensus 157 av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~--~iIIs~tkGi 200 (461)
.+.++|++|+|+|+..-+++..++.. . + .+||..+.-+
T Consensus 62 ~~~~~Divf~a~~~~~s~~~~~~~~~---a---G~~~~VID~Ss~f 101 (369)
T PRK06598 62 ALKKLDIIITCQGGDYTNEVYPKLRA---A---GWQGYWIDAASTL 101 (369)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHh---C---CCCeEEEECChHH
Confidence 35789999999999988887777643 2 4 4577776544
No 359
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=90.54 E-value=0.29 Score=50.60 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=29.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
.+|.|||+|..|.++|..|++. | ++|+++++.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~-G-----~~v~l~E~~ 33 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQK-G-----IKTTIFESK 33 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcC-C-----CeEEEecCC
Confidence 5799999999999999999999 8 899999976
No 360
>PRK06475 salicylate hydroxylase; Provisional
Probab=90.54 E-value=0.29 Score=51.02 Aligned_cols=34 Identities=21% Similarity=0.148 Sum_probs=31.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.||+|||+|.-|.++|..|++. | ++|+++.+.++
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~-G-----~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAAR-G-----WAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-C-----CcEEEEecCCc
Confidence 5899999999999999999999 8 89999998764
No 361
>PRK08013 oxidoreductase; Provisional
Probab=90.50 E-value=0.32 Score=50.75 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=31.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
..|.|||+|..|.++|..|++. | ++|+++++.+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~-G-----~~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGS-G-----LRVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhC-C-----CEEEEEeCCCC
Confidence 4799999999999999999999 8 99999998764
No 362
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.42 E-value=1.5 Score=45.24 Aligned_cols=90 Identities=19% Similarity=0.155 Sum_probs=58.1
Q ss_pred CCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEE-EEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchh
Q 012547 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV 117 (461)
Q Consensus 39 ~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~ 117 (461)
.+...-|++|+|+|.|+.-++..|... -+++|+|+ +.+|+.+.+.+.. +++ .+|
T Consensus 2 ~~s~~ir~Gi~g~g~ia~~f~~al~~~---p~s~~~Ivava~~s~~~A~~fA---------q~~-----------~~~-- 56 (351)
T KOG2741|consen 2 SDSATIRWGIVGAGRIARDFVRALHTL---PESNHQIVAVADPSLERAKEFA---------QRH-----------NIP-- 56 (351)
T ss_pred CCCceeEEEEeehhHHHHHHHHHhccC---cccCcEEEEEecccHHHHHHHH---------Hhc-----------CCC--
Confidence 455667999999999999999888643 11237766 4556554443211 111 011
Q ss_pred hhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCC--CEEEEcCCchhHHHHHHHHHH
Q 012547 118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDA--DIVINGLPSTETKEVFEEISR 182 (461)
Q Consensus 118 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~a--DiIIiaVps~~~~~vl~~i~~ 182 (461)
+.++..+.++.+++. |+|.+++|..+..+++-.+..
T Consensus 57 -----------------------------~~k~y~syEeLakd~~vDvVyi~~~~~qH~evv~l~l~ 94 (351)
T KOG2741|consen 57 -----------------------------NPKAYGSYEELAKDPEVDVVYISTPNPQHYEVVMLALN 94 (351)
T ss_pred -----------------------------CCccccCHHHHhcCCCcCEEEeCCCCccHHHHHHHHHH
Confidence 234556778877766 999999998777777765543
No 363
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=90.39 E-value=0.81 Score=50.09 Aligned_cols=67 Identities=15% Similarity=0.143 Sum_probs=46.2
Q ss_pred CcccccccchhHHhhHHHHHhhcC--------CCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 15 NGLIHHTNGSLEERLDELRRLMGK--------AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
+|-++-.|-.-.--+.-|++.++. .+...+++.|+|+|.+|.+++..|++. | .+|++++|+.++++
T Consensus 343 ~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~k~vlIlGaGGagrAia~~L~~~-G-----~~V~i~nR~~e~a~ 416 (529)
T PLN02520 343 DGKLVGYNTDYIGAISAIEDGLRASGSSPASGSPLAGKLFVVIGAGGAGKALAYGAKEK-G-----ARVVIANRTYERAK 416 (529)
T ss_pred CCEEEEEcccHHHHHHHHHhhhcccccccccccCCCCCEEEEECCcHHHHHHHHHHHHC-C-----CEEEEEcCCHHHHH
Confidence 566666665555444444432210 112235799999999999999999998 8 78999999876655
Q ss_pred h
Q 012547 87 R 87 (461)
Q Consensus 87 ~ 87 (461)
.
T Consensus 417 ~ 417 (529)
T PLN02520 417 E 417 (529)
T ss_pred H
Confidence 3
No 364
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=90.37 E-value=0.32 Score=49.78 Aligned_cols=32 Identities=31% Similarity=0.377 Sum_probs=30.1
Q ss_pred EEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 46 I~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
|.|||+|.-|+++|..|++. | ++|+++.+++.
T Consensus 2 ViIvGaG~aGl~~A~~L~~~-G-----~~v~v~Er~~~ 33 (385)
T TIGR01988 2 IVIVGGGMVGLALALALARS-G-----LKIALIEATPA 33 (385)
T ss_pred EEEECCCHHHHHHHHHHhcC-C-----CEEEEEeCCCc
Confidence 89999999999999999999 8 99999999874
No 365
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=90.35 E-value=0.36 Score=51.45 Aligned_cols=34 Identities=24% Similarity=0.248 Sum_probs=30.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
+++|.|||+|..|+..|..|++. | .+|++++..+
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~-G-----l~V~LiE~rp 35 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKR-G-----VPVELYEMRP 35 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC-C-----CcEEEEEccC
Confidence 46899999999999999999999 8 8999998654
No 366
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=90.35 E-value=0.33 Score=50.19 Aligned_cols=34 Identities=24% Similarity=0.402 Sum_probs=31.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
..+|.|||+|..|+++|..|++. | ++|+++++.+
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~-G-----~~V~liE~~~ 38 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQH-G-----FSVAVLEHAA 38 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcC-C-----CEEEEEcCCC
Confidence 46899999999999999999999 8 8999999865
No 367
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=90.34 E-value=1.5 Score=43.27 Aligned_cols=34 Identities=26% Similarity=0.297 Sum_probs=30.9
Q ss_pred eEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 45 RIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 45 kI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
+|.|+|+ |.+|+.++..|.+. | ++|++..|+++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~-g-----~~V~~~~R~~~~ 35 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA-S-----VPFLVASRSSSS 35 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC-C-----CcEEEEeCCCcc
Confidence 5899998 99999999999998 8 999999999764
No 368
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=90.14 E-value=0.39 Score=52.42 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=33.5
Q ss_pred CCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 39 ~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
......+|.|||+|..|.++|..|++. | ++|+++++.++
T Consensus 19 ~~~~~~dVlIVGaGpaGl~lA~~L~~~-G-----~~v~viE~~~~ 57 (547)
T PRK08132 19 DDPARHPVVVVGAGPVGLALAIDLAQQ-G-----VPVVLLDDDDT 57 (547)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHhC-C-----CcEEEEeCCCC
Confidence 333446899999999999999999999 8 89999998864
No 369
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=90.13 E-value=0.39 Score=49.92 Aligned_cols=35 Identities=23% Similarity=0.374 Sum_probs=31.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
..+|.|||+|..|.++|..|++. | ++|+++.+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~-G-----~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLA-G-----IDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhc-C-----CCEEEEEcCCc
Confidence 35799999999999999999999 8 99999998864
No 370
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=90.11 E-value=0.99 Score=53.07 Aligned_cols=58 Identities=22% Similarity=0.175 Sum_probs=43.5
Q ss_pred hHHhhHHHHHhhcCCCCC---CceEEEECccHHHHHHHHHHHHhcCCCC-CCeeEEEEecCch
Q 012547 25 LEERLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYLR-DKVLIRIWRRPGR 83 (461)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~---~mkI~IIGaGamG~alA~~La~~~G~~~-~~~~V~l~~r~~~ 83 (461)
..+|.|...+++|...-. ..||.|||+|..|+.++..|+.. |.-+ ++..++++|.+.=
T Consensus 398 ~~~RYdrqi~l~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~-Gv~~~~~G~i~IvD~D~V 459 (1008)
T TIGR01408 398 RGDRYDAQIAVFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALM-GVGTGKKGMITVTDPDLI 459 (1008)
T ss_pred hhhhhHHHHHHcCHHHHHHHhhCcEEEECCChHHHHHHHHHHHh-CCCcCCCCeEEEECCCEe
Confidence 468888888888754322 37899999999999999999998 8200 0137888887753
No 371
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.03 E-value=5.5 Score=42.84 Aligned_cols=38 Identities=13% Similarity=0.181 Sum_probs=27.8
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCC--eeEEEEec
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDK--VLIRIWRR 80 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~--~~V~l~~r 80 (461)
.+.+|+|-|| |.+|.++...+|.. ..|-++ ..+.|++.
T Consensus 122 ~p~~V~vtgAag~i~Y~l~~~ia~G-~~fG~~~~v~L~LlDi 162 (452)
T cd05295 122 NPLQVCITNASAPLCYHLIPSLASG-EVFGMEEEISIHLLDS 162 (452)
T ss_pred CceEEEEecCcHHHHHHHHHHHhCC-cccCCCCeEEEEEEcC
Confidence 3579999997 99999999999975 333222 34667777
No 372
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=90.00 E-value=0.4 Score=49.39 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=31.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
..+|+|||+|.-|.++|..|++. | .+|++++++..
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 39 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQS-G-----LRVALLAPRAP 39 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhC-C-----CeEEEEecCCC
Confidence 35799999999999999999999 8 89999998865
No 373
>PRK06392 homoserine dehydrogenase; Provisional
Probab=89.99 E-value=1.3 Score=45.54 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=19.8
Q ss_pred ceEEEECccHHHHHHHHHHHH
Q 012547 44 LRIVGVGAGAWGSVFTAMLQD 64 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~ 64 (461)
|||+|+|.|++|..++..|.+
T Consensus 1 mrVaIiGfG~VG~~va~~L~~ 21 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKS 21 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHh
Confidence 699999999999999999976
No 374
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=89.97 E-value=0.39 Score=47.79 Aligned_cols=35 Identities=29% Similarity=0.533 Sum_probs=31.4
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
|+|.|.|+ |.+|..++..|++. | ++|++++|+.+.
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~-g-----~~V~~~~r~~~~ 36 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQ-G-----EEVRVLVRPTSD 36 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHC-C-----CEEEEEEecCcc
Confidence 68999996 99999999999998 8 899999998653
No 375
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=89.75 E-value=0.52 Score=52.64 Aligned_cols=52 Identities=25% Similarity=0.398 Sum_probs=38.5
Q ss_pred hhHHhhHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 24 SLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
.+..|.+.+..+.+-.......|.|||+|..|.++|..|++. | .+|.++.++
T Consensus 52 ~~~~r~~~~~~~~~~~~~~~~DVvVIGGGi~Ga~~A~~lA~r-G-----l~V~LvE~~ 103 (627)
T PLN02464 52 SVPSRSAQESALIGATAAEPLDVLVVGGGATGAGVALDAATR-G-----LRVGLVERE 103 (627)
T ss_pred CCcChHHHHHHhhccccCCccCEEEECCCHHHHHHHHHHHhC-C-----CEEEEEecc
Confidence 334455555554322223446899999999999999999999 8 899999886
No 376
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=89.75 E-value=1.3 Score=40.92 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=24.8
Q ss_pred CCCceEEEECcc-HHHHHHHHHHHHhcCCCCCCeeEEEEec
Q 012547 41 GDPLRIVGVGAG-AWGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (461)
Q Consensus 41 ~~~mkI~IIGaG-amG~alA~~La~~~G~~~~~~~V~l~~r 80 (461)
..-++|+|||-+ ..|..++..|.++ | ..|++...
T Consensus 34 l~Gk~v~VvGrs~~VG~Pla~lL~~~-~-----atVt~~h~ 68 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKPLAMLLLNK-G-----ATVTICHS 68 (160)
T ss_dssp TTT-EEEEE-TTTTTHHHHHHHHHHT-T------EEEEE-T
T ss_pred CCCCEEEEECCcCCCChHHHHHHHhC-C-----CeEEeccC
Confidence 344789999986 5999999999988 6 78888643
No 377
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=89.73 E-value=0.41 Score=49.01 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=29.5
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.|+|||+|.+|.+.|..|++. | ++|+++++..
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~-G-----~~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARR-G-----LSVTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeCCC
Confidence 489999999999999999999 8 8999999874
No 378
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=89.67 E-value=3.6 Score=41.55 Aligned_cols=93 Identities=18% Similarity=0.200 Sum_probs=62.2
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
+..||+|.|. |..|.++-..+... | .+ .+|.-++..- + ..+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~-g-----~~-~v~~V~p~~~---------------------------~-~~v--- 46 (286)
T TIGR01019 5 KDTKVIVQGITGSQGSFHTEQMLAY-G-----TN-IVGGVTPGKG---------------------------G-TTV--- 46 (286)
T ss_pred CCCcEEEecCCcHHHHHHHHHHHhC-C-----CC-EEEEECCCCC---------------------------c-cee---
Confidence 4568999995 99999998888766 6 56 5555554210 0 000
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcC--CCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEee
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~--aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tk 198 (461)
.++.+..+.+++-+. .|+.+++||+..+.+++++.... + -..+|.++.
T Consensus 47 -------------------------~G~~~y~sv~dlp~~~~~Dlavi~vpa~~v~~~l~e~~~~---G--vk~avIis~ 96 (286)
T TIGR01019 47 -------------------------LGLPVFDSVKEAVEETGANASVIFVPAPFAADAIFEAIDA---G--IELIVCITE 96 (286)
T ss_pred -------------------------cCeeccCCHHHHhhccCCCEEEEecCHHHHHHHHHHHHHC---C--CCEEEEECC
Confidence 133444556665444 69999999999999999997752 1 134566888
Q ss_pred cCcc
Q 012547 199 GVEA 202 (461)
Q Consensus 199 Gi~~ 202 (461)
|+..
T Consensus 97 Gf~e 100 (286)
T TIGR01019 97 GIPV 100 (286)
T ss_pred CCCH
Confidence 8754
No 379
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=89.64 E-value=0.37 Score=54.04 Aligned_cols=33 Identities=15% Similarity=0.274 Sum_probs=30.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
++|+|||+|.+|.++|..|++. | .+|++++++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~-G-----~~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARR-G-----WQVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHC-C-----CeEEEEecCC
Confidence 5899999999999999999999 8 8999999874
No 380
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=89.56 E-value=0.55 Score=45.52 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=32.8
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
++|+|.|+|+ |.+|..++..|..+ | ++|++..|+.+.
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~-g-----~~V~~~~R~~~~ 53 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAK-G-----FAVKAGVRDVDK 53 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhC-C-----CEEEEEecCHHH
Confidence 4589999996 99999999999998 8 899999998754
No 381
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=89.55 E-value=0.49 Score=51.41 Aligned_cols=34 Identities=12% Similarity=0.269 Sum_probs=30.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
....|.|||+|..|.++|..+++. | .+|.++.++
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~r-G-----l~V~LvEk~ 38 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGR-G-----LSVLLCEQD 38 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHC-C-----CeEEEEecC
Confidence 446799999999999999999999 8 899999986
No 382
>PRK06126 hypothetical protein; Provisional
Probab=89.54 E-value=0.46 Score=51.73 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=32.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
..+|.|||+|..|.++|..|++. | ++|+++.+...
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~-G-----~~v~viEr~~~ 41 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRR-G-----VDSILVERKDG 41 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHC-C-----CcEEEEeCCCC
Confidence 36899999999999999999999 8 99999998764
No 383
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=89.52 E-value=1.1 Score=41.33 Aligned_cols=97 Identities=24% Similarity=0.329 Sum_probs=49.7
Q ss_pred hHHHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhh
Q 012547 29 LDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLI 108 (461)
Q Consensus 29 ~~~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~ 108 (461)
.++++.++........+|++.|||+=|.++...+--. . ..-..++|.++.+ .+
T Consensus 54 ~~~l~~~L~~~~~~gk~I~~yGA~~kg~tlln~~g~~-~----~~I~~vvD~np~K--------------~G-------- 106 (160)
T PF08484_consen 54 KAELREFLEKLKAEGKRIAGYGAGAKGNTLLNYFGLD-N----DLIDYVVDDNPLK--------------QG-------- 106 (160)
T ss_dssp HHHHHHHHHHHHHTT--EEEE---SHHHHHHHHHT---T----TTS--EEES-GGG--------------TT--------
T ss_pred HHHHHHHHHHHHHcCCEEEEECcchHHHHHHHHhCCC-c----ceeEEEEeCChhh--------------cC--------
Confidence 3444444443444446899999999999998886543 1 1234567777632 11
Q ss_pred hcccccchhhhhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHh-cCCCEEEEcCCchhHHHHHHHHHHHhhc
Q 012547 109 RRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVINGLPSTETKEVFEEISRYWKE 186 (461)
Q Consensus 109 ~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av-~~aDiIIiaVps~~~~~vl~~i~~~l~~ 186 (461)
.|+|+.. + +|.. +++.. ...|+||+ .+..+.+++.+++..+...
T Consensus 107 ---~~~PGt~-------i--------------------pI~~---p~~l~~~~pd~viv-law~y~~EI~~~~~~~~~~ 151 (160)
T PF08484_consen 107 ---KYLPGTH-------I--------------------PIVS---PEELKERKPDYVIV-LAWNYKDEIIEKLREYLER 151 (160)
T ss_dssp ---EE-TTT-----------------------------EEEE---GGG--SS--SEEEE-S-GGGHHHHHHHTHHHHHT
T ss_pred ---cccCCCC-------C--------------------eECC---HHHHhhCCCCEEEE-cChhhHHHHHHHHHHHHhc
Confidence 3666421 1 2322 22322 34798877 6788899999999988776
No 384
>PLN02852 ferredoxin-NADP+ reductase
Probab=89.48 E-value=0.55 Score=50.93 Aligned_cols=38 Identities=26% Similarity=0.376 Sum_probs=32.4
Q ss_pred CCCCceEEEECccHHHHHHHHHHHH--hcCCCCCCeeEEEEecCch
Q 012547 40 EGDPLRIVGVGAGAWGSVFTAMLQD--SYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 40 ~~~~mkI~IIGaGamG~alA~~La~--~~G~~~~~~~V~l~~r~~~ 83 (461)
....+||+|||+|.-|.+.|..|++ . | ++|++|++.+.
T Consensus 23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~-g-----~~Vtv~E~~p~ 62 (491)
T PLN02852 23 TSEPLHVCVVGSGPAGFYTADKLLKAHD-G-----ARVDIIERLPT 62 (491)
T ss_pred CCCCCcEEEECccHHHHHHHHHHHhhCC-C-----CeEEEEecCCC
Confidence 3345789999999999999999987 5 6 99999998863
No 385
>PLN02985 squalene monooxygenase
Probab=89.42 E-value=0.54 Score=51.22 Aligned_cols=35 Identities=29% Similarity=0.392 Sum_probs=31.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
..+|.|||+|..|+++|..|++. | ++|.++.|+..
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~-G-----~~V~vlEr~~~ 77 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKD-G-----RRVHVIERDLR 77 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHc-C-----CeEEEEECcCC
Confidence 35899999999999999999999 8 99999998753
No 386
>PRK09126 hypothetical protein; Provisional
Probab=89.38 E-value=0.44 Score=49.21 Aligned_cols=34 Identities=35% Similarity=0.432 Sum_probs=31.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.+|.|||+|.-|.++|..|++. | ++|+++.+.+.
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 37 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGS-G-----LKVTLIERQPL 37 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhC-C-----CcEEEEeCCCc
Confidence 4699999999999999999999 8 99999998764
No 387
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=89.32 E-value=0.53 Score=46.45 Aligned_cols=40 Identities=28% Similarity=0.341 Sum_probs=30.7
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCC----CC--CCeeEEEEecCc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGY----LR--DKVLIRIWRRPG 82 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~----~~--~~~~V~l~~r~~ 82 (461)
++.||.|||+|..|+.++..||+. |. +- .+.+++++|.+.
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~-G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARL-HHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHc-cccccccCCCCCCEEEEECCCE
Confidence 567999999999999999999986 51 00 012788888775
No 388
>PRK14851 hypothetical protein; Provisional
Probab=89.29 E-value=1.4 Score=49.63 Aligned_cols=60 Identities=15% Similarity=0.055 Sum_probs=41.6
Q ss_pred hHHhhHHHHHhhcCCC---CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhh
Q 012547 25 LEERLDELRRLMGKAE---GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (461)
Q Consensus 25 ~~~~~~~~~~~~~~~~---~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (461)
-+||.+.=.+++|... -+..||+|+|+|.+|+.++..|+.. |. .+++++|.+.-....+|
T Consensus 22 ~~~ry~R~~~l~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~-GV----G~l~LvD~D~ve~sNLN 84 (679)
T PRK14851 22 REAAFSRNIGLFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRT-GI----GRFHIADFDQFEPVNVN 84 (679)
T ss_pred HHHHhhhhHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHh-CC----CeEEEEcCCEecccccc
Confidence 3456665555554322 1237899999999999999999999 83 57888887753333333
No 389
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=89.29 E-value=1.8 Score=51.03 Aligned_cols=38 Identities=13% Similarity=0.077 Sum_probs=32.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
.+|.|+|+|..|+-+|..|+.+ |. ..++++|.+.-...
T Consensus 25 s~VLIiG~gGLG~EiaKnL~la-GV----g~iti~D~d~v~~s 62 (1008)
T TIGR01408 25 SNVLISGMGGLGLEIAKNLVLA-GV----KSVTLHDTEKCQAW 62 (1008)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CC----CeEEEEeCCeecHh
Confidence 6899999999999999999999 83 68999997753333
No 390
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=89.24 E-value=0.5 Score=51.78 Aligned_cols=35 Identities=20% Similarity=0.347 Sum_probs=28.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
+||+|||||.-|.+.+..|.+. | .+|+++.++.+.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~-g-----~~~~~fE~~~~i 36 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEE-G-----LEVTCFEKSDDI 36 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHT-T------EEEEEESSSSS
T ss_pred CEEEEECccHHHHHHHHHHHHC-C-----CCCeEEecCCCC
Confidence 5899999999999999999998 8 899999988753
No 391
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=89.16 E-value=0.43 Score=49.72 Aligned_cols=32 Identities=31% Similarity=0.399 Sum_probs=29.9
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.|+|||+|..|.++|..|++. | ++|+++.+.+
T Consensus 4 dV~IVGaG~aGl~~A~~L~~~-G-----~~v~viE~~~ 35 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQGS-G-----LEVLLLDGGP 35 (405)
T ss_pred cEEEECccHHHHHHHHHHhcC-C-----CEEEEEcCCC
Confidence 699999999999999999998 8 8999999875
No 392
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=89.15 E-value=0.62 Score=47.81 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=32.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
..++|+|||+|..|...|..|++. | ++|+++++.+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~-g-----~~v~lie~~~~ 52 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACL-G-----YEVHVYDKLPE 52 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-C-----CcEEEEeCCCC
Confidence 457999999999999999999998 8 89999998754
No 393
>PRK08374 homoserine dehydrogenase; Provisional
Probab=89.12 E-value=2.2 Score=44.05 Aligned_cols=42 Identities=29% Similarity=0.268 Sum_probs=29.1
Q ss_pred CHHHHh--cCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 153 NLQEAV--WDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 153 dl~~av--~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
++.+.+ .++|+||-++++....++..++ +.. +..||+..||.
T Consensus 82 ~~~ell~~~~~DVvVd~t~~~~a~~~~~~a---l~~---G~~VVtanK~~ 125 (336)
T PRK08374 82 SPEEIVEEIDADIVVDVTNDKNAHEWHLEA---LKE---GKSVVTSNKPP 125 (336)
T ss_pred CHHHHHhcCCCCEEEECCCcHHHHHHHHHH---Hhh---CCcEEECCHHH
Confidence 555655 4789999999877655555443 444 56788888874
No 394
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=88.97 E-value=0.55 Score=50.83 Aligned_cols=36 Identities=11% Similarity=0.236 Sum_probs=31.7
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 41 ~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.....|.|||+|..|.++|..|++. | .+|.++.+..
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~r-G-----~~V~LlEk~d 39 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAGR-G-----LKVLLCEKDD 39 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHhC-C-----CcEEEEECCC
Confidence 3446799999999999999999999 8 8999999873
No 395
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=88.89 E-value=0.53 Score=55.07 Aligned_cols=39 Identities=21% Similarity=0.204 Sum_probs=33.7
Q ss_pred CCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 38 KAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 38 ~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
+.....+||+|||+|.-|.+.|..|++. | |+|+++++..
T Consensus 301 ~~~~~gkkVaVIGsGPAGLsaA~~Lar~-G-----~~VtVfE~~~ 339 (944)
T PRK12779 301 WAAAVKPPIAVVGSGPSGLINAYLLAVE-G-----FPVTVFEAFH 339 (944)
T ss_pred cccCCCCeEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeeCC
Confidence 3334568999999999999999999999 8 9999998864
No 396
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.89 E-value=0.44 Score=51.05 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=32.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
.++++|||||+-|.+.|+.|.+. | ++|++..|+.+.
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~-g-----~~v~vfEr~~~i 41 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLRE-G-----HEVVVFERTDDI 41 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHC-C-----CCceEEEecCCc
Confidence 47899999999999999999998 8 999998887653
No 397
>PLN03075 nicotianamine synthase; Provisional
Probab=88.81 E-value=3.9 Score=41.51 Aligned_cols=42 Identities=12% Similarity=0.077 Sum_probs=29.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
.+.+|+.||+|..|..-...++.. . ++..++-++.+++.++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~-~---p~~~~~giD~d~~ai~~ 164 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHH-L---PTTSFHNFDIDPSANDV 164 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhc-C---CCCEEEEEeCCHHHHHH
Confidence 667999999999887655554433 1 12578899999876653
No 398
>PLN02686 cinnamoyl-CoA reductase
Probab=88.79 E-value=1.2 Score=46.25 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=44.2
Q ss_pred chhHHhhHHHHHhhcCC-------------------------CCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEE
Q 012547 23 GSLEERLDELRRLMGKA-------------------------EGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIR 76 (461)
Q Consensus 23 ~~~~~~~~~~~~~~~~~-------------------------~~~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~ 76 (461)
-++|..++|||+....- ....++|.|.|+ |.+|++++..|++. | ++|.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~VLVTGatGfIG~~lv~~L~~~-G-----~~V~ 81 (367)
T PLN02686 8 ESMEAEVEEFRAALLLSRGGDDDGWRGSRGGGKEANAGDAGADAEARLVCVTGGVSFLGLAIVDRLLRH-G-----YSVR 81 (367)
T ss_pred HhHHHHHHHHHHHHHhcccCCccccccccCccccccccccccCCCCCEEEEECCchHHHHHHHHHHHHC-C-----CEEE
Confidence 47888899999843211 223478999997 99999999999999 8 8999
Q ss_pred EEecCchhh
Q 012547 77 IWRRPGRSV 85 (461)
Q Consensus 77 l~~r~~~~~ 85 (461)
++.|+.+..
T Consensus 82 ~~~r~~~~~ 90 (367)
T PLN02686 82 IAVDTQEDK 90 (367)
T ss_pred EEeCCHHHH
Confidence 888876543
No 399
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=88.73 E-value=0.49 Score=49.40 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=29.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
..|.|||+|..|.++|..|++. | ++|+++++.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~-G-----~~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKES-D-----LRIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhC-C-----CEEEEEcCC
Confidence 4799999999999999999998 8 999999985
No 400
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=88.72 E-value=0.54 Score=52.84 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=32.2
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.+.+|.|||+|..|.++|..|++. | ++|+++.|+.
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~-G-----i~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKK-G-----FDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhc-C-----CeEEEEeccc
Confidence 347899999999999999999999 8 9999999875
No 401
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=88.62 E-value=0.51 Score=50.85 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=31.0
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
|||+|+|+|--|.+-|..|++. | ++|++|.++.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~-g-----~~vt~~ea~~ 33 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADA-G-----YDVTLYEARD 33 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhC-C-----CceEEEeccC
Confidence 7999999999999999999999 8 9999998765
No 402
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=88.61 E-value=2.4 Score=46.26 Aligned_cols=40 Identities=18% Similarity=0.366 Sum_probs=33.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
...||.|+|+|.+|...+..+... | .+|+++++++++.+.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~l-G-----A~V~a~D~~~~rle~ 203 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSL-G-----AIVRAFDTRPEVAEQ 203 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHH
Confidence 357999999999998877776666 8 789999999877664
No 403
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=88.54 E-value=1.1 Score=50.28 Aligned_cols=34 Identities=26% Similarity=0.459 Sum_probs=31.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.+||+|||+|..|.+.|..|++. | ++|+++++.+
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~-G-----~~V~V~E~~~ 360 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARN-G-----VAVTVYDRHP 360 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEecCC
Confidence 47999999999999999999999 8 8999999865
No 404
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=88.52 E-value=0.6 Score=50.09 Aligned_cols=36 Identities=22% Similarity=0.388 Sum_probs=32.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
..++|+|||+|..|.+.|..|++. | ++|+++++.+.
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~-G-----~~V~vie~~~~ 177 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARA-G-----HKVTVFERADR 177 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-C-----CcEEEEecCCC
Confidence 347999999999999999999998 8 89999998653
No 405
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=88.48 E-value=0.66 Score=52.03 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=32.2
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
..+||+|||+|..|.+.|..|++. | ++|+++++++.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~-G-----~~Vtv~e~~~~ 227 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRK-G-----HDVTIFDANEQ 227 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-C-----CcEEEEecCCC
Confidence 347999999999999999999998 8 99999998753
No 406
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.47 E-value=1.6 Score=44.10 Aligned_cols=30 Identities=23% Similarity=0.290 Sum_probs=25.7
Q ss_pred ceEEEECccH-HHHHHHHHHHHhcCCCCCCeeEEEEe
Q 012547 44 LRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWR 79 (461)
Q Consensus 44 mkI~IIGaGa-mG~alA~~La~~~G~~~~~~~V~l~~ 79 (461)
++++|||-|. .|..+|..|... | ..|+++.
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~-~-----atVtv~h 195 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNR-N-----ATVSVCH 195 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHC-C-----CEEEEEe
Confidence 6899999888 999999999877 6 7888774
No 407
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=88.39 E-value=2.5 Score=42.48 Aligned_cols=47 Identities=21% Similarity=0.273 Sum_probs=36.5
Q ss_pred cCHHHHhc--CCCEEEEcC--CchhHHHHHHHHHHHhhccCCCCEEEEEeecCcc
Q 012547 152 TNLQEAVW--DADIVINGL--PSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (461)
Q Consensus 152 ~dl~~av~--~aDiIIiaV--ps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~ 202 (461)
.++.++++ ++|++|=+. |--+.+++++.+..+.+ +.+|..++|-...
T Consensus 95 ~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~----~PIIFaLSNPt~~ 145 (279)
T cd05312 95 KSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNE----RPIIFALSNPTSK 145 (279)
T ss_pred CCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCC----CCEEEECCCcCCc
Confidence 67999999 889877655 44688999999988765 4688888887653
No 408
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=88.36 E-value=0.9 Score=48.81 Aligned_cols=35 Identities=26% Similarity=0.433 Sum_probs=31.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
...||+|||+|..|.+.|..|++. | ++|+++++.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~-G-----~~V~i~e~~~ 174 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARA-G-----VQVVVFDRHP 174 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHc-C-----CeEEEEecCC
Confidence 346899999999999999999998 8 8999998775
No 409
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=88.31 E-value=0.67 Score=49.45 Aligned_cols=37 Identities=19% Similarity=0.279 Sum_probs=32.6
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 41 ~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
...++|+|||+|..|.+.|..|++. | ++|+++++...
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~-g-----~~V~lie~~~~ 174 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARK-G-----YDVTIFEARDK 174 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhC-C-----CeEEEEccCCC
Confidence 3457999999999999999999998 8 99999988753
No 410
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=88.29 E-value=0.61 Score=48.77 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=31.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
++-|+|||||.-|++.|..|+++ | .+|.++.+..+
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~-G-----~~VlvlEk~~~ 37 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKA-G-----LDVLVLEKGSE 37 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHc-C-----CeEEEEecCCC
Confidence 46799999999999999999999 8 89999998764
No 411
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.16 E-value=1.4 Score=44.50 Aligned_cols=30 Identities=17% Similarity=0.344 Sum_probs=26.4
Q ss_pred CceEEEECcc-HHHHHHHHHHHHhcCCCCCCeeEEEE
Q 012547 43 PLRIVGVGAG-AWGSVFTAMLQDSYGYLRDKVLIRIW 78 (461)
Q Consensus 43 ~mkI~IIGaG-amG~alA~~La~~~G~~~~~~~V~l~ 78 (461)
-++|+|||.| .+|..+|..|.+. | ..|+++
T Consensus 157 Gk~vvVvGrs~~VG~Pla~lL~~~-g-----AtVtv~ 187 (285)
T PRK14191 157 GKDVVIIGASNIVGKPLAMLMLNA-G-----ASVSVC 187 (285)
T ss_pred CCEEEEECCCchhHHHHHHHHHHC-C-----CEEEEE
Confidence 3689999998 9999999999988 6 788877
No 412
>PRK12829 short chain dehydrogenase; Provisional
Probab=88.07 E-value=1.1 Score=43.16 Aligned_cols=46 Identities=13% Similarity=0.302 Sum_probs=36.6
Q ss_pred HHhhcCCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 33 RRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 33 ~~~~~~~~~~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
|.++++.+ .++|.|.|+ |.+|..++..|+++ | ++|.+.+|+++..+
T Consensus 3 ~~~~~~~~--~~~vlItGa~g~iG~~~a~~L~~~-g-----~~V~~~~r~~~~~~ 49 (264)
T PRK12829 3 IDLLKPLD--GLRVLVTGGASGIGRAIAEAFAEA-G-----ARVHVCDVSEAALA 49 (264)
T ss_pred hhHhhccC--CCEEEEeCCCCcHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 34555533 368999997 99999999999998 8 89999999876443
No 413
>PRK05884 short chain dehydrogenase; Provisional
Probab=88.07 E-value=0.81 Score=43.63 Aligned_cols=37 Identities=8% Similarity=0.239 Sum_probs=32.6
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
||+.|.|+ |.+|.+++..|++. | ++|.+.+|+.+.++
T Consensus 1 m~vlItGas~giG~~ia~~l~~~-g-----~~v~~~~r~~~~~~ 38 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRND-G-----HKVTLVGARRDDLE 38 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 58999997 89999999999998 8 89999999876554
No 414
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=88.02 E-value=1.2 Score=49.79 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=31.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.+||+|||+|..|.+.|..|++. | ++|+++.+.+.
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~-G-----~~Vtv~e~~~~ 344 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARA-G-----VQVDVFDRHPE 344 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHc-C-----CcEEEEeCCCC
Confidence 47999999999999999999998 8 89999998763
No 415
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=87.94 E-value=8.6 Score=38.49 Aligned_cols=68 Identities=24% Similarity=0.396 Sum_probs=36.9
Q ss_pred cCcccccccchhHHhh-HHHHHhhcCCCCCC-ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhh
Q 012547 14 SNGLIHHTNGSLEERL-DELRRLMGKAEGDP-LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (461)
Q Consensus 14 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (461)
|-|+......+||+-- ..+..+..+...++ ++|.-||+| ||+. +..+++.+| .+|+.++-++++++.+
T Consensus 32 S~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcG-wG~~-~~~~a~~~g-----~~v~gitlS~~Q~~~a 101 (273)
T PF02353_consen 32 SCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCG-WGGL-AIYAAERYG-----CHVTGITLSEEQAEYA 101 (273)
T ss_dssp S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-T-TSHH-HHHHHHHH-------EEEEEES-HHHHHHH
T ss_pred CCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCC-ccHH-HHHHHHHcC-----cEEEEEECCHHHHHHH
Confidence 3456666677787642 33555555555444 799999999 7744 455555536 7899999998877654
No 416
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=87.87 E-value=0.69 Score=45.08 Aligned_cols=33 Identities=27% Similarity=0.377 Sum_probs=30.2
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.|.|||+|..|.++|..|++. | .+|.++.++..
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~-g-----~~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADK-G-----LRVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeccCC
Confidence 489999999999999999998 8 89999998864
No 417
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=87.68 E-value=0.62 Score=49.72 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=30.2
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
+|+|||+|..|+..|..|++. | .+|+++.+++.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~-G-----~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQA-G-----VPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhC-C-----CcEEEEecccc
Confidence 699999999999999999999 8 89999987654
No 418
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=87.65 E-value=0.77 Score=50.35 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=30.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
..|.|||+|..|.++|..|++. | .+|.++.++.
T Consensus 7 ~DVvIIGGGi~G~~iA~~La~r-G-----~~V~LlEk~d 39 (546)
T PRK11101 7 TDVIIIGGGATGAGIARDCALR-G-----LRCILVERHD 39 (546)
T ss_pred ccEEEECcCHHHHHHHHHHHHc-C-----CeEEEEECCC
Confidence 5799999999999999999999 8 8999999853
No 419
>PRK08244 hypothetical protein; Provisional
Probab=87.63 E-value=0.69 Score=49.74 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=31.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
..|.|||+|..|.++|..|++. | ++|+++++.++
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~-G-----~~v~viEr~~~ 36 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALA-G-----VKTCVIERLKE 36 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-C-----CcEEEEecCCC
Confidence 4699999999999999999999 8 99999998765
No 420
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=87.51 E-value=3.4 Score=42.63 Aligned_cols=38 Identities=24% Similarity=0.328 Sum_probs=29.9
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
+++|+|+|.+|...+..+... | ..+|.+.++++++++.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~-G----a~~Viv~d~~~~Rl~~ 208 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLL-G----ASVVIVVDRSPERLEL 208 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHc-C----CceEEEeCCCHHHHHH
Confidence 899999999998875555555 6 2688889999887664
No 421
>PTZ00188 adrenodoxin reductase; Provisional
Probab=87.45 E-value=1 Score=48.92 Aligned_cols=43 Identities=16% Similarity=0.253 Sum_probs=33.4
Q ss_pred HhhcCCCCCCceEEEECccHHHHHHHHHHH-HhcCCCCCCeeEEEEecCch
Q 012547 34 RLMGKAEGDPLRIVGVGAGAWGSVFTAMLQ-DSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 34 ~~~~~~~~~~mkI~IIGaGamG~alA~~La-~~~G~~~~~~~V~l~~r~~~ 83 (461)
|-+.... .+.||+|||+|.-|.+.|..|+ +. | ++|++|.+.+.
T Consensus 31 ~~~~~~~-~~krVAIVGaGPAGlyaA~~Ll~~~-g-----~~VtlfEk~p~ 74 (506)
T PTZ00188 31 CFFTNEA-KPFKVGIIGAGPSALYCCKHLLKHE-R-----VKVDIFEKLPN 74 (506)
T ss_pred ccCCCCC-CCCEEEEECCcHHHHHHHHHHHHhc-C-----CeEEEEecCCC
Confidence 4444433 5679999999999999999765 55 6 89999998753
No 422
>PRK12831 putative oxidoreductase; Provisional
Probab=87.37 E-value=0.92 Score=48.72 Aligned_cols=36 Identities=17% Similarity=0.235 Sum_probs=31.9
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 41 ~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
...++|+|||+|..|.+.|..|++. | ++|+++++..
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~-G-----~~V~v~e~~~ 173 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKM-G-----YDVTIFEALH 173 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEecCC
Confidence 3458999999999999999999999 8 9999998654
No 423
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=87.36 E-value=1 Score=43.29 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=32.6
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
|+|.|+|+ |..|.+++..|++. | ++|.+.+|+++.++
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~-G-----~~V~~~~r~~~~~~ 38 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQ-G-----HKVIATGRRQERLQ 38 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHC-C-----CEEEEEECCHHHHH
Confidence 68999996 99999999999998 8 89999999876544
No 424
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=87.31 E-value=2.7 Score=43.30 Aligned_cols=37 Identities=24% Similarity=0.199 Sum_probs=27.9
Q ss_pred hcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecC
Q 012547 158 VWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (461)
Q Consensus 158 v~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi 200 (461)
.+++|++|.|.+...-+++..++.. . +.++|+.+.-+
T Consensus 64 ~~~~Divf~~ag~~~s~~~~p~~~~---~---G~~VIdnsSa~ 100 (334)
T COG0136 64 FSDVDIVFFAAGGSVSKEVEPKAAE---A---GCVVIDNSSAF 100 (334)
T ss_pred cccCCEEEEeCchHHHHHHHHHHHH---c---CCEEEeCCccc
Confidence 4589999999998888887777664 2 67788766444
No 425
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=87.29 E-value=0.81 Score=49.87 Aligned_cols=36 Identities=28% Similarity=0.351 Sum_probs=32.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
...+|.|||+|..|.++|..|++. | .+|.++.+..+
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~-G-----~~v~v~Er~~~ 44 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQY-G-----VRVLVLERWPT 44 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC-C-----CcEEEEecCCC
Confidence 346899999999999999999999 8 89999998864
No 426
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=87.27 E-value=1.3 Score=42.70 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=33.0
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
.++|.|.|+ |.+|.+++..|++. | ++|.+.+|+++..+
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~-G-----~~V~~~~r~~~~~~ 48 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQA-G-----AEVILNGRDPAKLA 48 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHc-C-----CEEEEEeCCHHHHH
Confidence 368999997 99999999999999 8 89999999876543
No 427
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=87.20 E-value=0.85 Score=47.43 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=29.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhc-CCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSY-GYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~-G~~~~~~~V~l~~r~~ 82 (461)
..|+|||+|.+|.++|..|++.. | ++|+++++..
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g-----~~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPG-----ARIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCC-----CeEEEEeCCC
Confidence 47999999999999999999752 3 8999999875
No 428
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=87.15 E-value=0.78 Score=44.99 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=29.3
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
+|+|||+|.-|.+.|..|++. | ++|++++++.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~-g-----~~v~lie~~~ 33 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARA-N-----LKTLIIEGME 33 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHC-C-----CCEEEEeccC
Confidence 699999999999999999998 8 8999999754
No 429
>PTZ00367 squalene epoxidase; Provisional
Probab=87.01 E-value=0.85 Score=50.39 Aligned_cols=34 Identities=21% Similarity=0.288 Sum_probs=31.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.++|.|||+|..|.++|..|++. | ++|.++.|+.
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~-G-----~~V~VlEr~~ 66 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQ-G-----RKVLMLERDL 66 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhc-C-----CEEEEEcccc
Confidence 36899999999999999999999 8 9999999975
No 430
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=87.00 E-value=3.5 Score=44.11 Aligned_cols=38 Identities=21% Similarity=0.149 Sum_probs=29.8
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCC-CCeeEEEEecCch
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLR-DKVLIRIWRRPGR 83 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~-~~~~V~l~~r~~~ 83 (461)
||.|||+|+.|+.++..|+.. |.-. ++..++++|.+.=
T Consensus 1 kVlvVGaGGlGcE~lKnLal~-Gv~~g~~G~I~IvD~D~I 39 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALM-GVGTGESGEITVTDMDNI 39 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CCCcCCCCeEEEECCCCc
Confidence 689999999999999999998 8200 1148889987753
No 431
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=86.99 E-value=2.9 Score=40.42 Aligned_cols=36 Identities=19% Similarity=0.300 Sum_probs=29.8
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
..++|+|.|.|++|..+|..|.+. | ...|.+.+.+.
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~-G----~~vV~vsD~~g 57 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEE-G----GKVLAVSDPDG 57 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-C----CEEEEEEcCCC
Confidence 447999999999999999999998 7 13666777766
No 432
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=86.93 E-value=1.1 Score=43.45 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=32.6
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
|+|.|.|+ |.+|.++|..|++. | ++|.+.+|+++.++
T Consensus 1 m~vlItGas~gIG~aia~~l~~~-G-----~~V~~~~r~~~~~~ 38 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKK-G-----ARVVISSRNEENLE 38 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHc-C-----CEEEEEeCCHHHHH
Confidence 68999997 88999999999999 8 89999999876554
No 433
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=86.91 E-value=0.9 Score=44.41 Aligned_cols=35 Identities=23% Similarity=0.157 Sum_probs=31.0
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.+|+|+|+|.+|+.++..|++. |. .+++++|.+.-
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~-GV----g~i~LvD~D~V 46 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARS-GV----GKLTLIDFDVV 46 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHc-CC----CEEEEECCCEE
Confidence 5899999999999999999999 83 68999988753
No 434
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=86.80 E-value=3.6 Score=39.65 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=31.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
..++|.|||+|..|..=+..|.+. | .+|++|+.+.
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll~~-g-----a~v~Vvs~~~ 45 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLLKA-G-----ADVTVVSPEF 45 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc-C-----CEEEEEcCCc
Confidence 446899999999999999999998 8 8999998775
No 435
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=86.80 E-value=3.3 Score=43.30 Aligned_cols=38 Identities=21% Similarity=0.240 Sum_probs=27.8
Q ss_pred HhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCC--CEEEEEeecC
Q 012547 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITV--PVIISLAKGV 200 (461)
Q Consensus 157 av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~--~iIIs~tkGi 200 (461)
...+.|++|.|.++...+++...++. . + .++|+.+.-+
T Consensus 61 ~~~~vDivffa~g~~~s~~~~p~~~~---a---G~~~~VIDnSSa~ 100 (366)
T TIGR01745 61 ALKALDIIITCQGGDYTNEIYPKLRE---S---GWQGYWIDAASSL 100 (366)
T ss_pred cccCCCEEEEcCCHHHHHHHHHHHHh---C---CCCeEEEECChhh
Confidence 46789999999999977777766553 2 5 5677777554
No 436
>PRK11445 putative oxidoreductase; Provisional
Probab=86.78 E-value=0.77 Score=47.10 Aligned_cols=33 Identities=15% Similarity=0.278 Sum_probs=29.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
+.|+|||+|.-|+++|..|++. ++|.++++.++
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-------~~V~liE~~~~ 34 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-------MKVIAIDKKHQ 34 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-------CCEEEEECCCc
Confidence 5799999999999999999876 68999998864
No 437
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=86.67 E-value=0.89 Score=47.67 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=29.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
++|.|||+|..|.++|..|++. | .+|.++.++.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~-G-----~~V~viEk~~ 34 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQL-N-----KRVLVVEKRN 34 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-C-----CeEEEEecCC
Confidence 5799999999999999999988 7 8999998753
No 438
>PRK06184 hypothetical protein; Provisional
Probab=86.65 E-value=0.78 Score=49.47 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=31.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
..|.|||+|..|.++|..|++. | ++|+++++.++.
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~-G-----i~v~viE~~~~~ 38 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARR-G-----VSFRLIEKAPEP 38 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHC-C-----CcEEEEeCCCCC
Confidence 4699999999999999999999 8 999999987643
No 439
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=86.59 E-value=0.99 Score=47.91 Aligned_cols=36 Identities=22% Similarity=0.244 Sum_probs=0.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
||||.|||+|.-|...|..|.+. + ++++|++++++.
T Consensus 1 m~~VVIIGgG~aG~~aA~~l~~~-~---~~~~I~li~~~~ 36 (438)
T PRK13512 1 MPKIIVVGAVAGGATCASQIRRL-D---KESDIIIFEKDR 36 (438)
T ss_pred CCeEEEECCcHHHHHHHHHHHhh-C---CCCCEEEEECCC
No 440
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=86.49 E-value=0.94 Score=48.34 Aligned_cols=34 Identities=18% Similarity=0.314 Sum_probs=31.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.++|+|||+|..|.+.|..|++. | ++|+++++..
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l~~~-G-----~~V~vie~~~ 166 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASELAKA-G-----HSVTVFEALH 166 (449)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-C-----CcEEEEecCC
Confidence 47999999999999999999998 8 8999999864
No 441
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=86.46 E-value=1.3 Score=40.68 Aligned_cols=41 Identities=17% Similarity=0.223 Sum_probs=32.5
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 41 ~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
..+.||+|+|+|..|..-+..+..- | ++|+.++.+.+..+.
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~l-G-----a~v~~~d~~~~~~~~ 58 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGL-G-----AEVVVPDERPERLRQ 58 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHT-T------EEEEEESSHHHHHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHC-C-----CEEEeccCCHHHHHh
Confidence 4468999999999999988888877 8 999999998765543
No 442
>PRK07774 short chain dehydrogenase; Provisional
Probab=86.45 E-value=1.6 Score=41.74 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=32.5
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
++|.|.|+ |.+|.+++..|++. | ++|.+.+|+++..+
T Consensus 7 k~vlItGasg~iG~~la~~l~~~-g-----~~vi~~~r~~~~~~ 44 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALARE-G-----ASVVVADINAEGAE 44 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 67999998 99999999999998 8 89999999875443
No 443
>PRK08017 oxidoreductase; Provisional
Probab=86.45 E-value=1.1 Score=42.85 Aligned_cols=36 Identities=17% Similarity=0.101 Sum_probs=31.8
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (461)
++|.|.|+ |.+|.+++..|++. | ++|.+++|+.+..
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~-g-----~~v~~~~r~~~~~ 39 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRR-G-----YRVLAACRKPDDV 39 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHC-C-----CEEEEEeCCHHHh
Confidence 37999998 99999999999998 8 8999999987644
No 444
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=86.40 E-value=0.77 Score=51.35 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=32.2
Q ss_pred CceEEEECccHHHHHHHHHHHH-hcCCCCCCeeEEEEecCchh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQD-SYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~-~~G~~~~~~~V~l~~r~~~~ 84 (461)
.++|.|||||..|.++|..|++ . | .+|.++++.++.
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~-G-----i~v~IiE~~~~~ 68 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFP-D-----ITTRIVERKPGR 68 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCC-C-----CcEEEEEcCCCC
Confidence 5789999999999999999998 7 7 899999988654
No 445
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=86.35 E-value=11 Score=34.44 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=27.8
Q ss_pred ceEEEEC-c-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVG-A-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIG-a-GamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.||++|| . +++..+++..+++- | .+|++.....
T Consensus 3 l~i~~vGD~~~rv~~Sl~~~~~~~-g-----~~~~~~~P~~ 37 (158)
T PF00185_consen 3 LKIAYVGDGHNRVAHSLIELLAKF-G-----MEVVLIAPEG 37 (158)
T ss_dssp EEEEEESSTTSHHHHHHHHHHHHT-T-----SEEEEESSGG
T ss_pred CEEEEECCCCChHHHHHHHHHHHc-C-----CEEEEECCCc
Confidence 6899999 4 89999999999987 7 7788887655
No 446
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=86.29 E-value=2.5 Score=42.57 Aligned_cols=45 Identities=16% Similarity=0.352 Sum_probs=34.1
Q ss_pred HHhhcCCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 33 RRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 33 ~~~~~~~~~~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
++-+.....+..||+|+|| |-+|..++..|..+ -+. .+..+||..
T Consensus 18 ~~~~~~~~~~~~KVAvlGAaGGIGQPLSLLlK~n-p~V---s~LaLYDi~ 63 (345)
T KOG1494|consen 18 KRVFSSGSQRGLKVAVLGAAGGIGQPLSLLLKLN-PLV---SELALYDIA 63 (345)
T ss_pred cccccccccCcceEEEEecCCccCccHHHHHhcC-ccc---ceeeeeecc
Confidence 4456666777789999997 99999999999877 322 356788765
No 447
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=86.11 E-value=1.2 Score=43.99 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=30.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
..|.|||+|.-|.+.|..|++. | .+|.++.+...
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~-G-----~~V~liEk~~~ 59 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKA-G-----LKVAVFERKLS 59 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhC-C-----CeEEEEecCCC
Confidence 4699999999999999999998 8 89999988753
No 448
>PRK07454 short chain dehydrogenase; Provisional
Probab=86.10 E-value=1.6 Score=41.58 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=33.1
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
.++++.|.|+ |.+|..++..|++. | ++|.+.+|+++..+
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~-G-----~~V~~~~r~~~~~~ 44 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKA-G-----WDLALVARSQDALE 44 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 3467899996 99999999999998 8 89999999876443
No 449
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=86.01 E-value=0.95 Score=48.93 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=31.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.++|.|||+|-=|.+-|..||++ | ++|.++.++.
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~-G-----~~V~VlE~~~ 36 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARA-G-----LKVTVLEKND 36 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhC-C-----CEEEEEEecC
Confidence 46899999999999999999999 9 9999998764
No 450
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=85.97 E-value=1 Score=41.74 Aligned_cols=34 Identities=29% Similarity=0.380 Sum_probs=26.1
Q ss_pred EEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhh
Q 012547 47 VGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVD 86 (461)
Q Consensus 47 ~IIGaGamG~alA~~La~~~G~~~~~~~-V~l~~r~~~~~~ 86 (461)
+|||||.-|.+.|..|.+. | .+ |.+++++.+.-.
T Consensus 1 ~IIGaG~aGl~~a~~l~~~-g-----~~~v~v~e~~~~~Gg 35 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLER-G-----IDPVVVLERNDRPGG 35 (203)
T ss_dssp EEE--SHHHHHHHHHHHHT-T--------EEEEESSSSSTT
T ss_pred CEECcCHHHHHHHHHHHhC-C-----CCcEEEEeCCCCCCC
Confidence 5999999999999999999 8 66 999999865433
No 451
>PRK00536 speE spermidine synthase; Provisional
Probab=85.94 E-value=6.2 Score=39.38 Aligned_cols=101 Identities=10% Similarity=0.040 Sum_probs=60.3
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhhhh
Q 012547 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (461)
Q Consensus 41 ~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (461)
.++.||.|||+|--|+ ++-+.+. . .+|++++.+++.++..+ +|+|.+.+.
T Consensus 71 ~~pk~VLIiGGGDGg~--~REvLkh-~-----~~v~mVeID~~Vv~~~k----------------------~~lP~~~~~ 120 (262)
T PRK00536 71 KELKEVLIVDGFDLEL--AHQLFKY-D-----THVDFVQADEKILDSFI----------------------SFFPHFHEV 120 (262)
T ss_pred CCCCeEEEEcCCchHH--HHHHHCc-C-----CeeEEEECCHHHHHHHH----------------------HHCHHHHHh
Confidence 3468999999999764 4555554 2 58999999998766311 245543322
Q ss_pred ccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHh-cCCCEEEEc-CCchhHHHHHHHHHHHhhccCCCCEEEEEee
Q 012547 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVING-LPSTETKEVFEEISRYWKERITVPVIISLAK 198 (461)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av-~~aDiIIia-Vps~~~~~vl~~i~~~l~~~~~~~iIIs~tk 198 (461)
+.| ++++......+.- +..|+||+= +++ ++..+.+...|++ +- +++++.
T Consensus 121 ~~D----------------------pRv~l~~~~~~~~~~~fDVIIvDs~~~---~~fy~~~~~~L~~---~G-i~v~Qs 171 (262)
T PRK00536 121 KNN----------------------KNFTHAKQLLDLDIKKYDLIICLQEPD---IHKIDGLKRMLKE---DG-VFISVA 171 (262)
T ss_pred hcC----------------------CCEEEeehhhhccCCcCCEEEEcCCCC---hHHHHHHHHhcCC---Cc-EEEECC
Confidence 222 2333333333322 568999987 443 4555666777776 44 445666
Q ss_pred cC
Q 012547 199 GV 200 (461)
Q Consensus 199 Gi 200 (461)
|-
T Consensus 172 ~s 173 (262)
T PRK00536 172 KH 173 (262)
T ss_pred CC
Confidence 63
No 452
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=85.91 E-value=1 Score=48.89 Aligned_cols=37 Identities=16% Similarity=0.304 Sum_probs=30.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
...|+|||+|.||+++|..|++. + ++.+|.++.+...
T Consensus 5 ~~DVvIIGgGIiG~slA~~L~~~-~---~g~~V~VlEk~~~ 41 (494)
T PRK05257 5 KTDVVLIGGGIMSATLGTLLKEL-E---PEWSITMFERLDG 41 (494)
T ss_pred cceEEEECcHHHHHHHHHHHHHh-C---CCCeEEEEEcCCc
Confidence 35799999999999999999984 2 1168999998753
No 453
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=85.90 E-value=1 Score=47.76 Aligned_cols=35 Identities=29% Similarity=0.351 Sum_probs=31.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
...|.|||+|.-|++.|..|+++ | ++|.++.+...
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~-G-----~~V~llEr~~~ 39 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLARE-G-----AQVLVIERGNS 39 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhC-C-----CeEEEEEcCCC
Confidence 35799999999999999999999 8 89999998753
No 454
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=85.87 E-value=0.96 Score=46.98 Aligned_cols=31 Identities=19% Similarity=0.375 Sum_probs=29.2
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
.|.|||+|.-|++.|..|++. | .+|.++++.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~-G-----~~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARA-G-----IETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhC-C-----CcEEEEECC
Confidence 589999999999999999999 8 899999987
No 455
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=85.79 E-value=0.83 Score=48.39 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=28.5
Q ss_pred eEEEECccHHHHHHHHHHHH----hcCCCCCCeeEEEEecC
Q 012547 45 RIVGVGAGAWGSVFTAMLQD----SYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~----~~G~~~~~~~V~l~~r~ 81 (461)
.|.|||+|..|.++|..|++ . | .+|.++++.
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~-G-----~~v~viE~~ 36 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTK-D-----LKVLLLDAV 36 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccC-C-----CeEEEEeCC
Confidence 48999999999999999998 7 7 899999984
No 456
>PRK07326 short chain dehydrogenase; Provisional
Probab=85.78 E-value=1.6 Score=41.23 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=32.2
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
++|.|+|+ |.+|..++..|++. | ++|.+.+|+++..+
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~-g-----~~V~~~~r~~~~~~ 44 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAE-G-----YKVAITARDQKELE 44 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHC-C-----CEEEEeeCCHHHHH
Confidence 67999996 99999999999998 8 88999999876543
No 457
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=85.75 E-value=1.3 Score=45.29 Aligned_cols=45 Identities=22% Similarity=0.068 Sum_probs=36.6
Q ss_pred HHHHHhhcCCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 30 DELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 30 ~~~~~~~~~~~~~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
+|||-.+-|.. |||.|.|+ |.+|+.++..|.+. | ++|+.++|...
T Consensus 5 ~~~~~~~~~~~---~~vlVtGatGfiG~~lv~~L~~~-g-----~~V~~~d~~~~ 50 (348)
T PRK15181 5 EELRTKLVLAP---KRWLITGVAGFIGSGLLEELLFL-N-----QTVIGLDNFST 50 (348)
T ss_pred hhhhhcccccC---CEEEEECCccHHHHHHHHHHHHC-C-----CEEEEEeCCCC
Confidence 46666654433 79999996 99999999999998 7 89999998653
No 458
>PRK07208 hypothetical protein; Provisional
Probab=85.71 E-value=1.1 Score=47.85 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=31.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
++++|+|||+|--|.+.|..|++. | ++|+++..+.
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~-g-----~~v~v~E~~~ 37 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKR-G-----YPVTVLEADP 37 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHC-C-----CcEEEEecCC
Confidence 456899999999999999999998 8 8999998764
No 459
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=85.68 E-value=0.96 Score=46.61 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=29.3
Q ss_pred CceEEEECccHHHHHHHHHHHHh--cCCCCCCeeEEEEecC
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDS--YGYLRDKVLIRIWRRP 81 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~--~G~~~~~~~V~l~~r~ 81 (461)
+++|.|||+|..|.++|..|++. .| ++|+++++.
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G-----~~v~v~E~~ 38 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGG-----LPVALIEAF 38 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCC-----CEEEEEeCC
Confidence 36799999999999999999873 15 899999995
No 460
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=85.66 E-value=1.3 Score=43.80 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=30.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
..|.|||+|.-|.+.|..|++. | .+|.++.++..
T Consensus 22 ~DVvIVGgGpAGL~aA~~la~~-G-----~~V~vlEk~~~ 55 (254)
T TIGR00292 22 SDVIIVGAGPSGLTAAYYLAKN-G-----LKVCVLERSLA 55 (254)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-C-----CcEEEEecCCC
Confidence 5799999999999999999999 8 89999988763
No 461
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=85.66 E-value=1.6 Score=47.44 Aligned_cols=56 Identities=23% Similarity=0.346 Sum_probs=41.4
Q ss_pred cccccchhHHhhHHHHHhhcC------CCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEe
Q 012547 18 IHHTNGSLEERLDELRRLMGK------AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWR 79 (461)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~------~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~ 79 (461)
+++-.-+.++-++.++...+. ......+|.|||+|..|.+.|..+++. | ++|++++
T Consensus 181 ~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~dVvIIGgGpAGl~AA~~la~~-G-----~~v~li~ 242 (515)
T TIGR03140 181 FHNGRMDLAELLEKLEETAGVEAASALEQLDPYDVLVVGGGPAGAAAAIYAARK-G-----LRTAMVA 242 (515)
T ss_pred EEecCCCHHHHHHHHhhccCcccchhccccCCCCEEEECCCHHHHHHHHHHHHC-C-----CcEEEEe
Confidence 344455666666776655222 223457899999999999999999998 8 8999885
No 462
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=85.58 E-value=1 Score=46.90 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=28.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
-.|+|||+|.+|+++|..|++..|+ .+|.+++++.
T Consensus 31 ~dvvIIGgGi~G~s~A~~L~~~~g~----~~V~vle~~~ 65 (407)
T TIGR01373 31 YDVIIVGGGGHGLATAYYLAKEHGI----TNVAVLEKGW 65 (407)
T ss_pred CCEEEECCcHHHHHHHHHHHHhcCC----CeEEEEEccc
Confidence 3699999999999999999983151 3899999864
No 463
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=85.55 E-value=2.3 Score=44.02 Aligned_cols=46 Identities=20% Similarity=0.178 Sum_probs=35.7
Q ss_pred HHHHhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 31 ELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 31 ~~~~~~~~~~~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
++...+|.. ...||.|||+|-||...+..|.++ |. .+|++.+|+.+
T Consensus 164 ~~~~~~~~l--~~k~vLvIGaGem~~l~a~~L~~~-g~----~~i~v~nRt~~ 209 (338)
T PRK00676 164 QELRRRQKS--KKASLLFIGYSEINRKVAYYLQRQ-GY----SRITFCSRQQL 209 (338)
T ss_pred HHHHHhCCc--cCCEEEEEcccHHHHHHHHHHHHc-CC----CEEEEEcCCcc
Confidence 333445443 346899999999999999999998 72 57999999864
No 464
>PRK07233 hypothetical protein; Provisional
Probab=85.55 E-value=0.96 Score=47.05 Aligned_cols=32 Identities=22% Similarity=0.301 Sum_probs=29.4
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
||+|||+|.-|.+.|..|++. | ++|+++.++.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~-G-----~~v~vlE~~~ 32 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR-G-----HEVTVFEADD 32 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC-C-----CcEEEEEeCC
Confidence 689999999999999999999 8 8999998765
No 465
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=85.47 E-value=3.7 Score=40.78 Aligned_cols=112 Identities=26% Similarity=0.275 Sum_probs=65.5
Q ss_pred ceEEEECccHHHHHHHHHHHHh---cCCCC--CCeeEEEEecCchhhhhhhhhhHHHHHhhhhhhHHhhhhcccccchhh
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDS---YGYLR--DKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~---~G~~~--~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~ 118 (461)
.||.|+|+|+-|.++|..|... .|.-. ...+++++|+..=..+. .+.+ +... ..|....
T Consensus 26 ~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~--r~~l----~~~~---------~~~a~~~- 89 (255)
T PF03949_consen 26 QRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDD--REDL----NPHK---------KPFARKT- 89 (255)
T ss_dssp -EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTT--TSSH----SHHH---------HHHHBSS-
T ss_pred cEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEecc--CccC----Chhh---------hhhhccC-
Confidence 6899999999999999998754 14100 00368888887532211 0000 0000 0011100
Q ss_pred hhccCCccchhhhhhhcccccCCCCCCCCeEEecCHHHHhcCC--CEEEEc--CCchhHHHHHHHHHHHhhccCCCCEEE
Q 012547 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDA--DIVING--LPSTETKEVFEEISRYWKERITVPVII 194 (461)
Q Consensus 119 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~~av~~a--DiIIia--Vps~~~~~vl~~i~~~l~~~~~~~iII 194 (461)
.......++.++++.+ |++|=+ +|--+.+++++.+.++.. ..+|.
T Consensus 90 ---------------------------~~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~e----rPIIF 138 (255)
T PF03949_consen 90 ---------------------------NPEKDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNE----RPIIF 138 (255)
T ss_dssp ---------------------------STTT--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSS----SEEEE
T ss_pred ---------------------------cccccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCC----CCEEE
Confidence 0122236899999988 988876 456789999999998866 36778
Q ss_pred EEeecCcc
Q 012547 195 SLAKGVEA 202 (461)
Q Consensus 195 s~tkGi~~ 202 (461)
.++|-.+.
T Consensus 139 ~LSNPt~~ 146 (255)
T PF03949_consen 139 PLSNPTPK 146 (255)
T ss_dssp E-SSSCGG
T ss_pred ECCCCCCc
Confidence 88887664
No 466
>PRK07102 short chain dehydrogenase; Provisional
Probab=85.44 E-value=1.5 Score=41.90 Aligned_cols=38 Identities=13% Similarity=0.159 Sum_probs=32.9
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
+|+|.|.|+ |.+|.+++..|++. | ++|++.+|+++..+
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~-G-----~~Vi~~~r~~~~~~ 39 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAA-G-----ARLYLAARDVERLE 39 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhc-C-----CEEEEEeCCHHHHH
Confidence 358999995 99999999999998 8 89999999976544
No 467
>PLN02214 cinnamoyl-CoA reductase
Probab=85.40 E-value=1.3 Score=45.29 Aligned_cols=42 Identities=19% Similarity=0.138 Sum_probs=34.9
Q ss_pred cCCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012547 37 GKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (461)
Q Consensus 37 ~~~~~~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (461)
.+...+.|+|.|.|+ |.+|+.++..|.+. | ++|+...|+.+.
T Consensus 4 ~~~~~~~~~vlVTGatGfIG~~l~~~L~~~-G-----~~V~~~~r~~~~ 46 (342)
T PLN02214 4 DVASPAGKTVCVTGAGGYIASWIVKILLER-G-----YTVKGTVRNPDD 46 (342)
T ss_pred ccccCCCCEEEEECCCcHHHHHHHHHHHHC-c-----CEEEEEeCCchh
Confidence 344445678999998 99999999999999 8 899999997653
No 468
>PRK12939 short chain dehydrogenase; Provisional
Probab=85.39 E-value=1.9 Score=41.02 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=32.9
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
.++|.|.|+ |.+|.++|..|++. | ++|.+++|+++..+
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~-G-----~~v~~~~r~~~~~~ 45 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEA-G-----ATVAFNDGLAAEAR 45 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHc-C-----CEEEEEeCCHHHHH
Confidence 478999997 99999999999998 8 89999998876544
No 469
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=85.37 E-value=0.76 Score=47.56 Aligned_cols=35 Identities=14% Similarity=0.170 Sum_probs=30.7
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 41 ~~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
..+|||+|||+|--|.+-|..|++. |+|+++.-+.
T Consensus 6 ~~r~~IAVIGsGisGLSAA~~Ls~r-------hdVTLfEA~~ 40 (447)
T COG2907 6 HPRRKIAVIGSGISGLSAAWLLSRR-------HDVTLFEADR 40 (447)
T ss_pred CCCcceEEEcccchhhhhHHhhhcc-------cceEEEeccc
Confidence 3568999999999999999999987 8999996553
No 470
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=85.32 E-value=2.2 Score=46.16 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=30.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.++|+|||+|..|...|..|++. | ++|+++++.+
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~-g-----~~V~v~e~~~ 176 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRA-G-----HTVTVFERED 176 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc-C-----CeEEEEecCC
Confidence 37999999999999999999998 8 8999998765
No 471
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=85.28 E-value=1.1 Score=48.12 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=30.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
++|+|||+|.-|.+.|..|+++ | ++|.++.++.
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~-G-----~~v~vlE~~~ 34 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKR-G-----YRVTLLEQHA 34 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-C-----CeEEEEecCC
Confidence 4799999999999999999999 8 8999998774
No 472
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.25 E-value=2.5 Score=42.57 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=23.6
Q ss_pred ceEEEECcc-HHHHHHHHHHHHhcCCCCCCeeEEEE
Q 012547 44 LRIVGVGAG-AWGSVFTAMLQDSYGYLRDKVLIRIW 78 (461)
Q Consensus 44 mkI~IIGaG-amG~alA~~La~~~G~~~~~~~V~l~ 78 (461)
++|+|||-+ .+|..+|..|.+. | ..|+++
T Consensus 158 k~vvViGrS~~VG~Pla~lL~~~-~-----AtVti~ 187 (281)
T PRK14183 158 KDVCVVGASNIVGKPMAALLLNA-N-----ATVDIC 187 (281)
T ss_pred CEEEEECCCCcchHHHHHHHHHC-C-----CEEEEe
Confidence 589999977 8899999998877 5 777765
No 473
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=85.23 E-value=1.4 Score=40.55 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=28.7
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
+|.|||+|.-|.+.|..|++. | .+|.+++...
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~-~-----~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP-G-----AKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-T-----SEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcC-C-----CeEEEEeccc
Confidence 689999999999999999988 7 8999997654
No 474
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.15 E-value=2.6 Score=42.40 Aligned_cols=37 Identities=19% Similarity=0.276 Sum_probs=23.6
Q ss_pred CHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEe
Q 012547 153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (461)
Q Consensus 153 dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~t 197 (461)
++++.+++||+||.|++...+ +. ..++++ +++||.+.
T Consensus 188 ~L~~~~~~ADIvI~Avgk~~l---v~--~~~vk~---GavVIDVg 224 (279)
T PRK14178 188 NLKAELRQADILVSAAGKAGF---IT--PDMVKP---GATVIDVG 224 (279)
T ss_pred HHHHHHhhCCEEEECCCcccc---cC--HHHcCC---CcEEEEee
Confidence 345667889999999973321 11 123566 78887765
No 475
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=85.12 E-value=6.3 Score=38.40 Aligned_cols=34 Identities=12% Similarity=0.221 Sum_probs=29.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.++|.|||+|.+|..=+..|.+. | .+|++++..-
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~-g-----A~VtVVap~i 58 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKK-G-----CYVYILSKKF 58 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEcCCC
Confidence 46899999999999988889888 7 8999998653
No 476
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.09 E-value=2.4 Score=45.82 Aligned_cols=34 Identities=21% Similarity=0.201 Sum_probs=30.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.+|.|+|.|..|.+.+..|... | .+|++++++.+
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~-G-----~~v~~~D~~~~ 46 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRF-G-----ARPTVCDDDPD 46 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHC-C-----CEEEEEcCCHH
Confidence 5899999999999999988888 8 89999997653
No 477
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.06 E-value=1.4 Score=46.67 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=31.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
.++|.|+|+|..|.++|..|++. | ++|++++++.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~-G-----~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKL-G-----AKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCc
Confidence 47899999999999999999999 8 9999999875
No 478
>PRK07023 short chain dehydrogenase; Provisional
Probab=84.96 E-value=1.3 Score=42.40 Aligned_cols=35 Identities=17% Similarity=0.286 Sum_probs=31.3
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
+|+|.|.|+ |.+|.+++..|++. | ++|.+.+|+.+
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~-G-----~~v~~~~r~~~ 36 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQP-G-----IAVLGVARSRH 36 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhC-C-----CEEEEEecCcc
Confidence 478999997 99999999999998 8 89999998764
No 479
>PRK05993 short chain dehydrogenase; Provisional
Probab=84.96 E-value=1.8 Score=42.55 Aligned_cols=37 Identities=22% Similarity=0.186 Sum_probs=32.5
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
++|.|.|+ |.+|.++|..|++. | ++|.+.+|+.+.++
T Consensus 5 k~vlItGasggiG~~la~~l~~~-G-----~~Vi~~~r~~~~~~ 42 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSD-G-----WRVFATCRKEEDVA 42 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHH
Confidence 47899998 99999999999998 8 89999999876544
No 480
>PRK08267 short chain dehydrogenase; Provisional
Probab=84.94 E-value=1.6 Score=42.08 Aligned_cols=38 Identities=13% Similarity=0.152 Sum_probs=32.6
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
+++.|.|+ |.+|.+++..|++. | ++|.+++|+.+.++.
T Consensus 2 k~vlItGasg~iG~~la~~l~~~-G-----~~V~~~~r~~~~~~~ 40 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAE-G-----WRVGAYDINEAGLAA 40 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHH
Confidence 46999996 99999999999999 8 899999998765543
No 481
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=84.89 E-value=1.3 Score=44.95 Aligned_cols=36 Identities=8% Similarity=0.056 Sum_probs=30.2
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
||||.|.|+ |.+|+.++..|.++.| ++|..++|+.+
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~-----~~V~~~~r~~~ 37 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTD-----WEVYGMDMQTD 37 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCC-----CeEEEEeCcHH
Confidence 479999997 9999999999986414 89999998754
No 482
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=84.85 E-value=1.2 Score=51.93 Aligned_cols=34 Identities=21% Similarity=0.170 Sum_probs=31.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~ 81 (461)
..+||+|||+|.-|.+.|..|++. | |+|++++..
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~-G-----h~Vtv~E~~ 415 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRS-G-----HNVTAIDGL 415 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC-C-----CeEEEEccc
Confidence 457999999999999999999998 8 999999974
No 483
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.85 E-value=1.7 Score=41.30 Aligned_cols=37 Identities=14% Similarity=0.180 Sum_probs=32.8
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
++|.|+|+ |.+|.+++..|++. | ++|++.+|+++..+
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~-G-----~~V~~~~r~~~~~~ 43 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAE-G-----ARVVVTDRNEEAAE 43 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 68999997 99999999999998 8 88999999986544
No 484
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=84.84 E-value=16 Score=36.79 Aligned_cols=117 Identities=21% Similarity=0.223 Sum_probs=69.7
Q ss_pred CeEEecCHHHHhcCCCEEEEcCCchh-HHHHHHHHHHHhhccCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCC
Q 012547 147 PLKVVTNLQEAVWDADIVINGLPSTE-TKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPI 225 (461)
Q Consensus 147 ~i~~t~dl~~av~~aDiIIiaVps~~-~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~ 225 (461)
++++++|-.||++++|++|+.+|--. ...+++++.+++++ +++|.. +=.+++. .+...+++ +++.
T Consensus 128 GvkVtsDD~EAvk~aei~I~ftPfG~~t~~Iikki~~~ipE---gAII~~-tCTIpt~--------~ly~~le~-l~R~- 193 (342)
T PRK00961 128 GLKVTTDDREAVADADIVITWLPKGGMQPDIIEKFADDIKE---GAIVTH-ACTIPTT--------KFAKIFKD-LGRD- 193 (342)
T ss_pred CceEecCcHHHhcCCCEEEEecCCCCCchHHHHHHHhhCCC---CCEEec-cccCCHH--------HHHHHHHH-hCcc-
Confidence 68888888899999999999999654 78999999999998 564433 3234332 12233333 4432
Q ss_pred CcEEEEeC-cchhHhhhccCceEEEEeCChhHHHHHHHHhcCCCceEEe-cCChHH
Q 012547 226 ENILYLGG-PNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWD-NGDLVT 279 (461)
Q Consensus 226 ~~v~vlsG-Pn~a~ev~~g~~~~~~~~~~~~~~~~l~~ll~~~g~~v~~-s~Di~g 279 (461)
.+.+.|. |.-.- ...|+.....--.+++..+++.++-.+.+-..|. ..|+++
T Consensus 194 -DvgIsS~HPaaVP-gt~Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~PA~lvs 247 (342)
T PRK00961 194 -DLNVTSYHPGAVP-EMKGQVYIAEGYADEEAVEKLYEIGKKARGNAFKMPANLIG 247 (342)
T ss_pred -cCCeeccCCCCCC-CCCCceecccccCCHHHHHHHHHHHHHhCCCeeecchhhcc
Confidence 2222222 22111 0113321111112567888888888887766664 456665
No 485
>PLN02487 zeta-carotene desaturase
Probab=84.82 E-value=1.4 Score=48.80 Aligned_cols=36 Identities=25% Similarity=0.309 Sum_probs=32.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
.++||+|||+|..|.+.|..|++. | ++|+++.+.+.
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~-g-----~~v~i~E~~~~ 109 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQ-G-----HEVDIYESRPF 109 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhC-C-----CeeEEEecCCC
Confidence 347999999999999999999999 8 99999987653
No 486
>PRK14852 hypothetical protein; Provisional
Probab=84.77 E-value=2.8 Score=48.96 Aligned_cols=42 Identities=17% Similarity=0.117 Sum_probs=33.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhh
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (461)
..||+|||+|..|+.++..|+.. |. .+++++|.+.-....+|
T Consensus 332 ~srVlVvGlGGlGs~ia~~LAra-GV----G~I~L~D~D~Ve~SNLN 373 (989)
T PRK14852 332 RSRVAIAGLGGVGGIHLMTLART-GI----GNFNLADFDAYSPVNLN 373 (989)
T ss_pred cCcEEEECCcHHHHHHHHHHHHc-CC----CeEEEEcCCEecccccc
Confidence 36899999999999999999999 83 57888887754433333
No 487
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=84.74 E-value=1.4 Score=45.70 Aligned_cols=35 Identities=29% Similarity=0.246 Sum_probs=31.6
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 42 ~~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
..|||.|.|+ |.+|+.++..|.+. | ++|+.++|..
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~-G-----~~V~~v~r~~ 55 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAE-G-----HYIIASDWKK 55 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhC-C-----CEEEEEEecc
Confidence 4589999998 99999999999998 8 9999999864
No 488
>PRK05866 short chain dehydrogenase; Provisional
Probab=84.67 E-value=1.7 Score=43.38 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=33.3
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (461)
++|.|.|+ |.+|.++|..|++. | ++|.+.+|+.+.++.
T Consensus 41 k~vlItGasggIG~~la~~La~~-G-----~~Vi~~~R~~~~l~~ 79 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARR-G-----ATVVAVARREDLLDA 79 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 67999997 99999999999999 8 899999999765543
No 489
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=84.61 E-value=1.2 Score=47.42 Aligned_cols=33 Identities=18% Similarity=0.291 Sum_probs=30.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
|||.|||+|.-|.+.|..+++. | .+|.+++++.
T Consensus 1 ~~vvVIG~G~aG~~aA~~~~~~-g-----~~V~lie~~~ 33 (458)
T PRK06912 1 SKLVVIGGGPAGYVAAITAAQN-G-----KNVTLIDEAD 33 (458)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-C-----CcEEEEECCc
Confidence 6999999999999999999998 8 8999999863
No 490
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=84.51 E-value=1.3 Score=47.54 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=30.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 43 ~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
|++|.|||+|..|...|..+++. | ++|.++.++.
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~-g-----~~v~~~e~~~ 34 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQL-G-----ADVTVIERDG 34 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC-C-----CeEEEEEccC
Confidence 46899999999999999999998 8 8999998753
No 491
>PRK07190 hypothetical protein; Provisional
Probab=84.31 E-value=1.4 Score=47.69 Aligned_cols=34 Identities=24% Similarity=0.235 Sum_probs=31.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 44 mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
..|.|||+|..|.++|..|++. | .+|.++++.++
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~-G-----i~V~llEr~~~ 39 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLC-G-----LNTVIVDKSDG 39 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHc-C-----CCEEEEeCCCc
Confidence 5799999999999999999998 8 89999998864
No 492
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=84.27 E-value=1.2 Score=45.72 Aligned_cols=33 Identities=24% Similarity=0.351 Sum_probs=29.3
Q ss_pred EEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012547 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (461)
Q Consensus 46 I~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~ 83 (461)
|.|||+|..|+++|..|++. | +++|+++.+...
T Consensus 2 v~IvGaG~aGl~~A~~L~~~-G----~~~v~v~E~~~~ 34 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRL-G----KIKIALIEANSP 34 (382)
T ss_pred EEEECccHHHHHHHHHHhcC-C----CceEEEEeCCCc
Confidence 89999999999999999998 6 268999998754
No 493
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.19 E-value=3.1 Score=41.90 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=20.7
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEE
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIW 78 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~ 78 (461)
++|+|||- ..+|..+|..|.+. | ..|+++
T Consensus 157 k~vvViGrS~iVGkPla~lL~~~-~-----atVtic 186 (282)
T PRK14169 157 KRVVIVGRSNIVGRPLAGLMVNH-D-----ATVTIA 186 (282)
T ss_pred CEEEEECCCccchHHHHHHHHHC-C-----CEEEEE
Confidence 57888884 56777888887766 5 666665
No 494
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=83.97 E-value=1.2 Score=47.29 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=26.9
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 45 kI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
+|.|||+|+-|...|..+++. | .+|.++.++++.-+
T Consensus 2 dviIIGgGaAGl~aA~~aa~~-g-----~~V~vlE~~~~~gk 37 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEK-G-----ARVLVLERNKRVGK 37 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHT-T-------EEEE-SSSSS-H
T ss_pred cEEEECCCHHHHHHHHHHHhC-C-----CCEEEEeCCccccc
Confidence 589999999999999999999 8 99999999986543
No 495
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=83.94 E-value=1.5 Score=51.57 Aligned_cols=35 Identities=17% Similarity=0.331 Sum_probs=31.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012547 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (461)
Q Consensus 42 ~~mkI~IIGaGamG~alA~~La~~~G~~~~~~~V~l~~r~~ 82 (461)
..++|+|||+|.-|.+.|..|++. | ++|+++++.+
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~-G-----~~VTV~Ek~~ 570 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARA-G-----HPVTVFEKKE 570 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeccc
Confidence 347899999999999999999999 8 9999998764
No 496
>PRK08703 short chain dehydrogenase; Provisional
Probab=83.90 E-value=2.3 Score=40.45 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=32.6
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 44 mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
++|.|.|+ |.+|.+++..|++. | ++|.+++|+++..+
T Consensus 7 k~vlItG~sggiG~~la~~l~~~-g-----~~V~~~~r~~~~~~ 44 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAA-G-----ATVILVARHQKKLE 44 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHc-C-----CEEEEEeCChHHHH
Confidence 58999996 99999999999998 8 89999999986544
No 497
>PRK08265 short chain dehydrogenase; Provisional
Probab=83.83 E-value=2.4 Score=41.24 Aligned_cols=38 Identities=13% Similarity=0.084 Sum_probs=32.9
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
.+++.|.|+ |.+|.++|..|++. | ++|.+.+|+.+..+
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~-G-----~~V~~~~r~~~~~~ 44 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAA-G-----ARVAIVDIDADNGA 44 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 368999997 99999999999999 8 89999999876544
No 498
>PRK06194 hypothetical protein; Provisional
Probab=83.82 E-value=2.3 Score=41.66 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=32.5
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012547 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (461)
Q Consensus 43 ~mkI~IIGa-GamG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (461)
.++|.|.|+ |.+|.+++..|++. | ++|.+++|+.+..+
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~-G-----~~V~~~~r~~~~~~ 44 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAAL-G-----MKLVLADVQQDALD 44 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHC-C-----CEEEEEeCChHHHH
Confidence 367999996 89999999999999 8 89999999876544
No 499
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.75 E-value=3.3 Score=42.06 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=23.4
Q ss_pred CHHHHhcCCCEEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEE
Q 012547 153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL 196 (461)
Q Consensus 153 dl~~av~~aDiIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~ 196 (461)
|+++..++||+||.|+....+ +. ..++++ +++||.+
T Consensus 194 ~l~~~~~~ADIvIsAvGkp~~---i~--~~~ik~---gavVIDv 229 (297)
T PRK14186 194 DLASITREADILVAAAGRPNL---IG--AEMVKP---GAVVVDV 229 (297)
T ss_pred CHHHHHhhCCEEEEccCCcCc---cC--HHHcCC---CCEEEEe
Confidence 455667889999999964432 11 235666 6777654
No 500
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=83.74 E-value=7.7 Score=39.01 Aligned_cols=68 Identities=12% Similarity=0.061 Sum_probs=42.6
Q ss_pred ecCHHHHhcC-CC-EEEEcCCchhHHHHHHHHHHHhhccCCCCEEEEEeecCccccccccccCCHHHHHHhHhCCCCCcE
Q 012547 151 VTNLQEAVWD-AD-IVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENI 228 (461)
Q Consensus 151 t~dl~~av~~-aD-iIIiaVps~~~~~vl~~i~~~l~~~~~~~iIIs~tkGi~~~~~~~~~~~~~se~i~~~lg~~~~~v 228 (461)
..++++.+.. +| ++|=.+.+..+.+.++.... . +..+|.-|.|+..+. . +.+.+.- .+
T Consensus 58 ~~~l~~~~~~~~d~VvIDFT~P~~~~~n~~~~~~---~---gv~~ViGTTG~~~~~--------~-~~l~~~~-----~i 117 (275)
T TIGR02130 58 EARIGEVFAKYPELICIDYTHPSAVNDNAAFYGK---H---GIPFVMGTTGGDREA--------L-AKLVADA-----KH 117 (275)
T ss_pred cccHHHHHhhcCCEEEEECCChHHHHHHHHHHHH---C---CCCEEEcCCCCCHHH--------H-HHHHHhc-----CC
Confidence 5778887766 89 77878877777666555443 2 456777888887652 1 1122221 24
Q ss_pred EEEeCcchhH
Q 012547 229 LYLGGPNIAS 238 (461)
Q Consensus 229 ~vlsGPn~a~ 238 (461)
.++..|||..
T Consensus 118 ~~l~apNfSi 127 (275)
T TIGR02130 118 PAVIAPNMAK 127 (275)
T ss_pred CEEEECcccH
Confidence 5678888865
Done!