BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012548
(461 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IO0|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-2
pdb|2IO1|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO1|C Chain C, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO1|E Chain E, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO2|A Chain A, Crystal Structure Of Human Senp2 In Complex With
Rangap1-sumo-1
pdb|2IO3|A Chain A, Crystal Structure Of Human Senp2 In Complex With Rangap1-
Sumo-2
Length = 232
Score = 105 bits (263), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 96/173 (55%), Gaps = 11/173 (6%)
Query: 289 FIPLTKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLL 348
+ LT++ E + A + ++S + + IT +Q L+ WLNDEVIN Y+ LL
Sbjct: 8 LLELTEDMEKEISNALGHGPQDEILS-SAFKLRITRGDIQTLKNYHWLNDEVINFYMNLL 66
Query: 349 KEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPI 408
ER K+ Q + H F+TFFY KL G ++AVKRWT G L E + I VPI
Sbjct: 67 VERNKK--QGYPALHVFSTFFYPKLKSGG----YQAVKRWTK----GVNLFEQEIILVPI 116
Query: 409 HKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDV 461
H+++HW L VID + K +YLDS+ + ++ L +Y +E + K D+++
Sbjct: 117 HRKVHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQYLQDESKTKRNSDLNL 169
>pdb|1TGZ|A Chain A, Structure Of Human Senp2 In Complex With Sumo-1
pdb|1TH0|A Chain A, Structure Of Human Senp2
pdb|1TH0|B Chain B, Structure Of Human Senp2
Length = 226
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 96/173 (55%), Gaps = 11/173 (6%)
Query: 289 FIPLTKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLL 348
+ LT++ E + A + ++S + + IT +Q L+ WLNDEVIN Y+ LL
Sbjct: 2 LLELTEDMEKEISNALGHGPQDEILS-SAFKLRITRGDIQTLKNYHWLNDEVINFYMNLL 60
Query: 349 KEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPI 408
ER K+ Q + H F+TFFY KL G ++AVKRWT G L E + I VPI
Sbjct: 61 VERNKK--QGYPALHVFSTFFYPKLKSGG----YQAVKRWTK----GVNLFEQEIILVPI 110
Query: 409 HKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDV 461
H+++HW L VID + K +YLDS+ + ++ L +Y +E + K D+++
Sbjct: 111 HRKVHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQYLQDESKTKRNSDLNL 163
>pdb|2XPH|A Chain A, Crystal Structure Of Human Senp1 With The Bound Cobalt
pdb|2XPH|B Chain B, Crystal Structure Of Human Senp1 With The Bound Cobalt
Length = 238
Score = 98.2 bits (243), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 92/174 (52%), Gaps = 13/174 (7%)
Query: 289 FIPLTKEEEAAVERAF-SANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGL 347
F +T+E E ++ F + N VL + IT K +Q L WLNDE+IN Y+ +
Sbjct: 14 FPEITEEMEKEIKNVFRNGNQDEVLSEAFR--LTITRKDIQTLNHLNWLNDEIINFYMNM 71
Query: 348 LKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVP 407
L ER K + H FNTFF+ KL K ++AVKRWT KK+ + D + VP
Sbjct: 72 LMERSKE--KGLPSVHAFNTFFFTKL----KTAGYQAVKRWT--KKVD--VFSVDILLVP 121
Query: 408 IHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDV 461
IH +HWCLAV+D + K Y DS+ G + + L +Y +E DK K+ D
Sbjct: 122 IHLGVHWCLAVVDFRKKNITYYDSMGGINNEACRILLQYLKQESIDKKRKEFDT 175
>pdb|2IY0|A Chain A, Senp1 (Mutant) Sumo1 Rangap
pdb|2IY1|A Chain A, Senp1 (Mutant) Full Length Sumo1
pdb|2IY1|C Chain C, Senp1 (Mutant) Full Length Sumo1
Length = 226
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 92/174 (52%), Gaps = 13/174 (7%)
Query: 289 FIPLTKEEEAAVERAF-SANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGL 347
F +T+E E ++ F + N VL + IT K +Q L WLNDE+IN Y+ +
Sbjct: 2 FPEITEEMEKEIKNVFRNGNQDEVLSEAFR--LTITRKDIQTLNHLNWLNDEIINFYMNM 59
Query: 348 LKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVP 407
L ER K + H FNTFF+ KL K ++AVKRWT KK+ + D + VP
Sbjct: 60 LMERSKE--KGLPSVHAFNTFFFTKL----KTAGYQAVKRWT--KKVD--VFSVDILLVP 109
Query: 408 IHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDV 461
IH +HWCLAV+D + K Y DS+ G + + L +Y +E DK K+ D
Sbjct: 110 IHLGVHWCLAVVDFRKKNITYYDSMGGINNEACRILLQYLKQESIDKKRKEFDT 163
>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
pdb|2XRE|B Chain B, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
Length = 230
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 92/173 (53%), Gaps = 11/173 (6%)
Query: 289 FIPLTKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLL 348
F +T+E E ++ F + ++S + IT K +Q L WLNDE+IN Y+ +L
Sbjct: 6 FPEITEEMEKEIKNVFRNGNQDEVLSEA-FRLTITRKDIQTLNHLNWLNDEIINFYMNML 64
Query: 349 KEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPI 408
ER K + H FNTFF+ KL K ++AVKRWT KK+ + D + VPI
Sbjct: 65 MERSKE--KGLPSVHAFNTFFFTKL----KTAGYQAVKRWT--KKVD--VFSVDILLVPI 114
Query: 409 HKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDV 461
H +HWCLAV+D + K Y DS+ G + + L +Y +E DK K+ D
Sbjct: 115 HLGVHWCLAVVDFRKKNITYYDSMGGINNEACRILLQYLKQESIDKKRKEFDT 167
>pdb|2IYC|A Chain A, Senp1 Native Structure
pdb|2IYC|B Chain B, Senp1 Native Structure
pdb|2IYD|A Chain A, Senp1 Covalent Complex With Sumo-2
Length = 226
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 92/174 (52%), Gaps = 13/174 (7%)
Query: 289 FIPLTKEEEAAVERAF-SANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGL 347
F +T+E E ++ F + N VL + IT K +Q L WLNDE+IN Y+ +
Sbjct: 2 FPEITEEMEKEIKNVFRNGNQDEVLSEAFR--LTITRKDIQTLNHLNWLNDEIINFYMNM 59
Query: 348 LKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVP 407
L ER K + H FNTFF+ KL K ++AVKRWT KK+ + D + VP
Sbjct: 60 LMERSKE--KGLPSVHAFNTFFFTKL----KTAGYQAVKRWT--KKVD--VFSVDILLVP 109
Query: 408 IHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDV 461
IH +HWCLAV+D + K Y DS+ G + + L +Y +E DK K+ D
Sbjct: 110 IHLGVHWCLAVVDFRKKNITYYDSMGGINNEACRILLQYLKQESIDKKRKEFDT 163
>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKG|B Chain B, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKH|A Chain A, Senp1-sumo2 Complex
Length = 225
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 92/174 (52%), Gaps = 13/174 (7%)
Query: 289 FIPLTKEEEAAVERAF-SANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGL 347
F +T+E E ++ F + N VL + IT K +Q L WLNDE+IN Y+ +
Sbjct: 2 FPEITEEMEKEIKNVFRNGNQDEVLSEAFR--LTITRKDIQTLNHLNWLNDEIINFYMNM 59
Query: 348 LKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVP 407
L ER K + H FNTFF+ KL K ++AVKRWT KK+ + D + VP
Sbjct: 60 LMERSKE--KGLPSVHAFNTFFFTKL----KTAGYQAVKRWT--KKVD--VFSVDILLVP 109
Query: 408 IHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKCGKDIDV 461
IH +HWCLAV+D + K Y DS+ G + + L +Y +E DK K+ D
Sbjct: 110 IHLGVHWCLAVVDFRKKNITYYDSMGGINNEACRILLQYLKQESIDKKRKEFDT 163
>pdb|2G4D|A Chain A, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
pdb|2G4D|C Chain C, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
Length = 205
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 79/142 (55%), Gaps = 10/142 (7%)
Query: 320 IDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKG 379
+ IT K +Q L WLNDE+IN Y+ +L ER K + H FNTFF+ KL K
Sbjct: 11 LTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKG--LPSVHAFNTFFFTKL----KT 64
Query: 380 YDFRAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKV 439
++AVKRWT KK+ + D + VPIH +HWCLAV+D + K Y DS+ G + +
Sbjct: 65 AGYQAVKRWT--KKVD--VFSVDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEA 120
Query: 440 LGDLARYFVEEVRDKCGKDIDV 461
L +Y +E DK K+ D
Sbjct: 121 CRILLQYLKQESIDKKRKEFDT 142
>pdb|2HKP|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfenic Acid
pdb|2HL8|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfinic Acid
pdb|2HL9|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfonic Acid
Length = 221
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 90/175 (51%), Gaps = 20/175 (11%)
Query: 292 LTKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKER 351
L ++++ V++A ++ L++ I+IT + + L P WLND +I ++ K
Sbjct: 7 LNEKDDDQVQKALASRENTQLMN--RDNIEITVRDFKTLAPRRWLNDTIIEFFM---KYI 61
Query: 352 EKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIH-K 410
EK P FN+FFY L+ +GY + V+RW KK + + DKIF PI+
Sbjct: 62 EKSTPNTVA----FNSFFYTNLS--ERGY--QGVRRWMKRKKTQ--IDKLDKIFTPINLN 111
Query: 411 QIHWCLAVIDRKDKKFQYLDSLK----GRDKKVLGDLARYFVEEVRDKCGKDIDV 461
Q HW L +ID K K Y+DSL +L DL +Y +EE + G+D D+
Sbjct: 112 QSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEESKHTIGEDFDL 166
>pdb|1EUV|A Chain A, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain In
Complex With Smt3, The Yeast Ortholog Of Sumo
Length = 221
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 90/175 (51%), Gaps = 20/175 (11%)
Query: 292 LTKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKER 351
L ++++ V++A ++ L++ I+IT + + L P WLND +I ++ K
Sbjct: 7 LNEKDDDQVQKALASRENTQLMN--RDNIEITVRDFKTLAPRRWLNDTIIEFFM---KYI 61
Query: 352 EKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIH-K 410
EK P FN+FFY L+ +GY + V+RW KK + + DKIF PI+
Sbjct: 62 EKSTPNTVA----FNSFFYTNLS--ERGY--QGVRRWMKRKKTQ--IDKLDKIFTPINLN 111
Query: 411 QIHWCLAVIDRKDKKFQYLDSLK----GRDKKVLGDLARYFVEEVRDKCGKDIDV 461
Q HW L +ID K K Y+DSL +L DL +Y +EE + G+D D+
Sbjct: 112 QSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEESKHTIGEDFDL 166
>pdb|3EAY|A Chain A, Crystal Structure Of The Human Senp7 Catalytic Domain
Length = 323
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 17/116 (14%)
Query: 316 TETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFY----- 370
T+ G+ +T + L+CL G +LND +I+ YL L EK + + H F++FFY
Sbjct: 29 TKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLI-LEKASDELVERSHIFSSFFYKCLTR 87
Query: 371 --NKLACGNKGYDF-----RAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVI 419
N L N + V+ WT + D IFVP+++ HW LAVI
Sbjct: 88 KENNLTEDNPNLSMAQRRHKRVRTWTR----HINIFNKDYIFVPVNESSHWYLAVI 139
>pdb|2OIX|A Chain A, Xanthomonas Xopd C470a Mutant
Length = 186
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 16/122 (13%)
Query: 334 AWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKK 393
+WL D + Y L R + EP L HF ++ L+ + RA ++
Sbjct: 3 SWLLDGHLRAYTDDLARRLRGEPNAHL-LHFADSQVVTMLSSADPDQQARA-------QR 54
Query: 394 LGYGLIECDKIFVPIHK-QIHWCLAVIDRKDK----KFQYLDSLKGRD--KKVLGDLARY 446
L G +F+PI++ HW L V+DR++K + Y DS+ +D ++ L D+A Y
Sbjct: 55 LLAGDDIPPIVFLPINQPNAHWSLLVVDRRNKDAVAAYHY-DSMAQKDPQQRYLADMAAY 113
Query: 447 FV 448
+
Sbjct: 114 HL 115
>pdb|2OIV|A Chain A, Structural Analysis Of Xanthomonas Xopd Provides Insights
Into Substrate Specificity Of Ubiquitin-Like Protein
Proteases
Length = 186
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 16/122 (13%)
Query: 334 AWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKK 393
+WL D + Y L R + EP L HF ++ L+ + RA ++
Sbjct: 3 SWLLDGHLRAYTDDLARRLRGEPNAHL-LHFADSQVVTMLSSADPDQQARA-------QR 54
Query: 394 LGYGLIECDKIFVPIHK-QIHWCLAVIDRKDK----KFQYLDSLKGRD--KKVLGDLARY 446
L G +F+PI++ HW L V+DR++K + Y DS+ +D ++ L D+A Y
Sbjct: 55 LLAGDDIPPIVFLPINQPNAHWSLLVVDRRNKDAVAAYHY-DSMAQKDPQQRYLADMAAY 113
Query: 447 FV 448
+
Sbjct: 114 HL 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,718,781
Number of Sequences: 62578
Number of extensions: 584726
Number of successful extensions: 1441
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1403
Number of HSP's gapped (non-prelim): 18
length of query: 461
length of database: 14,973,337
effective HSP length: 102
effective length of query: 359
effective length of database: 8,590,381
effective search space: 3083946779
effective search space used: 3083946779
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)