Query 012548
Match_columns 461
No_of_seqs 232 out of 846
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 11:35:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012548.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012548hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xph_A Sentrin-specific protea 100.0 9.7E-37 3.3E-41 291.3 18.4 163 286-460 11-174 (238)
2 1th0_A SMT3-, sentrin-specific 100.0 2.1E-36 7.1E-41 286.7 18.4 160 289-460 2-162 (226)
3 1euv_A ULP1 protease; SUMO hyd 100.0 1.2E-34 4E-39 274.2 15.9 158 288-460 3-165 (221)
4 3eay_A Sentrin-specific protea 100.0 3.5E-34 1.2E-38 287.6 14.2 148 307-459 17-242 (323)
5 2bkr_A Sentrin-specific protea 99.9 2.3E-27 7.9E-32 222.2 15.0 126 318-455 9-144 (212)
6 2oix_A Xanthomonas outer prote 99.9 5.2E-22 1.8E-26 184.0 10.1 109 332-448 1-116 (186)
7 4ekf_A Adenain; alpha and beta 66.9 6.4 0.00022 37.2 5.0 31 411-441 52-82 (204)
8 1cxq_A Avian sarcoma virus int 14.6 2.3E+02 0.0077 23.6 5.1 34 397-430 12-45 (162)
9 2cxa_A Leucyl/phenylalanyl-tRN 14.2 78 0.0027 31.0 2.3 21 331-351 124-144 (256)
10 1jhg_A Trp operon repressor; c 8.4 40 0.0014 28.5 -1.8 15 42-56 67-81 (101)
No 1
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A
Probab=100.00 E-value=9.7e-37 Score=291.34 Aligned_cols=163 Identities=39% Similarity=0.669 Sum_probs=148.7
Q ss_pred CCCCCCCCHHHHHHHHHHHcc-CCCceEeeccCCceEEccccccccCCCCcccHHHHHHHHHHHHHhhhcCCccccceEE
Q 012548 286 REPFIPLTKEEEAAVERAFSA-NWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHF 364 (461)
Q Consensus 286 ~e~f~pLS~E~e~~V~~al~~-~~~~VLv~~~~~gI~It~~DL~~L~p~~WLNDeIINFYL~lL~er~~~ep~~~~kvh~ 364 (461)
++.|+|||+|++++|++++.. ++++||+.+ +++.|+.+|+.||.+++||||+|||||+++|.++.... ..+++|+
T Consensus 11 ~~~~~~lt~e~~~~v~~~l~~~~~~~vl~~~--~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~--~~~~~~~ 86 (238)
T 2xph_A 11 EDEFPEITEEMEKEIKNVFRNGNQDEVLSEA--FRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEK--GLPSVHA 86 (238)
T ss_dssp -CCCCCCCHHHHHHHHHHSSSSCTTCCCEEE--TTEEECHHHHHTTSTTCCCCHHHHHHHHHHHHHHTTST--TSCCEEE
T ss_pred ccCCCCCCHHHHHHHHHHHcCCChhheeecC--CCcEEeHHHHhhcCCCCccCHHHHHHHHHHHHHhhhhc--CCCceee
Confidence 467999999999999999986 677888764 78999999999999999999999999999999876432 3578999
Q ss_pred echhHHHhhhcCCCCCChhhHhhhhhcccccCCccccceEEeeeccCCceeEEEeeeCCCeEEEEcCCCCCCHHHHHHHH
Q 012548 365 FNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLA 444 (461)
Q Consensus 365 FNSFFy~kL~~~k~g~~y~~VkRWTkrkKv~idLfekD~IfIPIN~gsHWsLaVI~~k~k~I~yyDSLgg~n~~vl~~L~ 444 (461)
||||||++|... +|..|++|+++ .++|++|+||||||.+.||+|+||+.+.++|+|||||++.+..+++.|+
T Consensus 87 f~sff~~~l~~~----~~~~v~~w~~~----~~l~~~~~i~iPin~~~HW~L~vi~~~~~~i~~~DSl~~~~~~~~~~l~ 158 (238)
T 2xph_A 87 FNTFFFTKLKTA----GYQAVKRWTKK----VDVFSVDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEACRILL 158 (238)
T ss_dssp CCTTTTHHHHTT----CHHHHTTTTTT----CCGGGSSEEEEEEEETTEEEEEEEETTTTEEEEECTTCCCCHHHHHHHH
T ss_pred eecHHHHHhhhc----ccHHHHHHhcc----CCcccCCEEEEcccCCCceEEEEEEcccceEEEeecccCCCHHHHHHHH
Confidence 999999999987 89999999973 5799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhCCCCC
Q 012548 445 RYFVEEVRDKCGKDID 460 (461)
Q Consensus 445 ~YL~~E~kdK~g~~~D 460 (461)
+||..|+++|.|..+|
T Consensus 159 ~~L~~e~~~k~~~~~~ 174 (238)
T 2xph_A 159 QYLKQESIDKKRKEFD 174 (238)
T ss_dssp HHHHHHHHHHHCSCCC
T ss_pred HHHHHHHHHhcCCCcC
Confidence 9999999999998765
No 2
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A
Probab=100.00 E-value=2.1e-36 Score=286.71 Aligned_cols=160 Identities=39% Similarity=0.694 Sum_probs=146.8
Q ss_pred CCCCCHHHHHHHHHHHcc-CCCceEeeccCCceEEccccccccCCCCcccHHHHHHHHHHHHHhhhcCCccccceEEech
Q 012548 289 FIPLTKEEEAAVERAFSA-NWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNT 367 (461)
Q Consensus 289 f~pLS~E~e~~V~~al~~-~~~~VLv~~~~~gI~It~~DL~~L~p~~WLNDeIINFYL~lL~er~~~ep~~~~kvh~FNS 367 (461)
|+|||+|++++|..++.. ++++++++. +++.|+++|+.||.+++||||+|||||+++|.++...+ ..+++|+|||
T Consensus 2 ~~~lt~~~~~~~~~~l~~~~~~~~~~~~--~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~--~~~~~~~f~s 77 (226)
T 1th0_A 2 LLELTEDMEKEISNALGHGPQDEILSSA--FKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQ--GYPALHVFST 77 (226)
T ss_dssp CCCCCHHHHHHHHHHHSSSCTTCEEEEE--TTEEEEHHHHGGGSTTCCCCHHHHHHHHHHHHHHHHHH--TCCCEEECCT
T ss_pred CCCCCHHHHHHHHHHhccCCccceeecc--CCeEEEHHHHhhcCCCCccChHHHHHHHHHHHHhhhhc--cCCcEEEEeH
Confidence 789999999999999975 778888874 79999999999999999999999999999998776432 3478999999
Q ss_pred hHHHhhhcCCCCCChhhHhhhhhcccccCCccccceEEeeeccCCceeEEEeeeCCCeEEEEcCCCCCCHHHHHHHHHHH
Q 012548 368 FFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYF 447 (461)
Q Consensus 368 FFy~kL~~~k~g~~y~~VkRWTkrkKv~idLfekD~IfIPIN~gsHWsLaVI~~k~k~I~yyDSLgg~n~~vl~~L~~YL 447 (461)
|||++|... +|+.|++|++. .++|++|+||||||.+.||+|+||+.+.++|.|||||++.+..+++.|++||
T Consensus 78 ~f~~~l~~~----~~~~v~~w~~~----~~l~~~~~i~iPin~~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~~l~~~l 149 (226)
T 1th0_A 78 FFYPKLKSG----GYQAVKRWTKG----VNLFEQEIILVPIHRKVHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQYL 149 (226)
T ss_dssp THHHHHHHH----TGGGTGGGGTT----CCGGGSSEEEEEEEETTEEEEEEEETTTTEEEEECTTCCCCHHHHHHHHHHH
T ss_pred HHHHHhhhc----ccHHHHHHhhc----CCcccCCEEEEeEEeCcEEEEEEEEcCCCceEEEcCCCCCchHHHHHHHHHH
Confidence 999999987 79999999973 5899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhCCCCC
Q 012548 448 VEEVRDKCGKDID 460 (461)
Q Consensus 448 ~~E~kdK~g~~~D 460 (461)
..|+++|.|.++|
T Consensus 150 ~~e~~~k~~~~~~ 162 (226)
T 1th0_A 150 QDESKTKRNSDLN 162 (226)
T ss_dssp HHHHHHHTSCCCC
T ss_pred HHHHHHhcCCCCC
Confidence 9999999988765
No 3
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A
Probab=100.00 E-value=1.2e-34 Score=274.22 Aligned_cols=158 Identities=33% Similarity=0.637 Sum_probs=142.0
Q ss_pred CCCCCCHHHHHHHHHHHccCCCceEeeccCCceEEccccccccCCCCcccHHHHHHHHHHHHHhhhcCCccccceEEech
Q 012548 288 PFIPLTKEEEAAVERAFSANWRAVLVSHTETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNT 367 (461)
Q Consensus 288 ~f~pLS~E~e~~V~~al~~~~~~VLv~~~~~gI~It~~DL~~L~p~~WLNDeIINFYL~lL~er~~~ep~~~~kvh~FNS 367 (461)
.|+|||+|++.+|+.++..+++++|+. ..++.|+.+|+.||.+++||||+|||||+++|.+.. +++|+|||
T Consensus 3 ~~~~l~~~~~~~v~~~l~~~~~~~l~~--~~~i~i~~~Dl~~L~~~~wLND~vI~fy~~~l~~~~-------~~~~~f~s 73 (221)
T 1euv_A 3 LVPELNEKDDDQVQKALASRENTQLMN--RDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKST-------PNTVAFNS 73 (221)
T ss_dssp SSCCCCHHHHHHHHHHHTCSSCCEEEE--ETTEEEEHHHHGGGSTTCCCBHHHHHHHHHHHHHHS-------TTEEECCT
T ss_pred cCCCCCHHHHHHHHHHhcCCCCeeeec--CCCeEEEHHHHhhhcCCCCCCHHHHHHHHHHHHhcC-------CCeEEEEc
Confidence 578999999999999999977889886 479999999999999999999999999999997642 57999999
Q ss_pred hHHHhhhcCCCCCChhhHhhhhhcccccCCccccceEEeeecc-CCceeEEEeeeCCCeEEEEcCCCCC-CH---HHHHH
Q 012548 368 FFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIHK-QIHWCLAVIDRKDKKFQYLDSLKGR-DK---KVLGD 442 (461)
Q Consensus 368 FFy~kL~~~k~g~~y~~VkRWTkrkKv~idLfekD~IfIPIN~-gsHWsLaVI~~k~k~I~yyDSLgg~-n~---~vl~~ 442 (461)
|||++|... +|..|+||+++++ .++|++|+||||||. +.||+|+||+++.++|+|||||++. +. .+++.
T Consensus 74 ~f~~~l~~~----~~~~v~rw~~~~~--~~~~~~~~i~iPin~~~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~~i~~~ 147 (221)
T 1euv_A 74 FFYTNLSER----GYQGVRRWMKRKK--TQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTD 147 (221)
T ss_dssp HHHHHHHHH----TGGGTTTTTGGGT--SCGGGCSEEEEEEEETTTEEEEEEEETTTTEEEEECSSCCSCCHHHHHHHHH
T ss_pred HHHHHhhhh----ccHHHHHHHHhcc--CCcccCCEEEEEEEcCCCeEEEEEEEcCCCEEEEEecCCCCCcchHHHHHHH
Confidence 999999886 8999999998644 579999999999998 5999999999999999999999965 43 57889
Q ss_pred HHHHHHHHHhhhhCCCCC
Q 012548 443 LARYFVEEVRDKCGKDID 460 (461)
Q Consensus 443 L~~YL~~E~kdK~g~~~D 460 (461)
|+.||.+|++++.+.+++
T Consensus 148 l~~~l~~e~~~~~~~~~~ 165 (221)
T 1euv_A 148 LQKYVMEESKHTIGEDFD 165 (221)
T ss_dssp HHHHHHHHTTSSSCTTCE
T ss_pred HHHHHHHHHHHhcCCCce
Confidence 999999999998887764
No 4
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}
Probab=100.00 E-value=3.5e-34 Score=287.61 Aligned_cols=148 Identities=29% Similarity=0.475 Sum_probs=124.6
Q ss_pred CCCceEeecc---CCceEEccccccccCCCCcccHHHHHHHHHHHHHhhhcCCccccceEEechhHHHhhhcCCCC----
Q 012548 307 NWRAVLVSHT---ETGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKG---- 379 (461)
Q Consensus 307 ~~~~VLv~~~---~~gI~It~~DL~~L~p~~WLNDeIINFYL~lL~er~~~ep~~~~kvh~FNSFFy~kL~~~k~g---- 379 (461)
+-.++|+++. +.|+.|+++||.||.+++||||+||||||+||..+.. .....+++|+||||||++|...+.+
T Consensus 17 ~~~~~~~yP~~~~k~~i~it~~Dl~~L~~~~wLND~IInFyl~~L~~e~~-~~~~~~r~h~FnSFFy~kL~~~~~~~~~~ 95 (323)
T 3eay_A 17 LVQKLIVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKA-SDELVERSHIFSSFFYKCLTRKENNLTED 95 (323)
T ss_dssp CCCEEEEESCTTSSSCEEEEHHHHHTTSTTCCCCHHHHHHHHHHHHHHTS-CHHHHHTEEECCTHHHHHHSCC-------
T ss_pred CcceeEEeCCCCCCCceEEEHHHHHhhCCCCCcCHHHHHHHHHHHHhhhc-cccccCcEEEEchHHHHHHHhcccccccc
Confidence 5678888764 5899999999999999999999999999999964321 1123478999999999999875211
Q ss_pred --------CChhhHhhhhhcccccCCccccceEEeeeccCCceeEEEeeeCC----------------------------
Q 012548 380 --------YDFRAVKRWTSAKKLGYGLIECDKIFVPIHKQIHWCLAVIDRKD---------------------------- 423 (461)
Q Consensus 380 --------~~y~~VkRWTkrkKv~idLfekD~IfIPIN~gsHWsLaVI~~k~---------------------------- 423 (461)
.+|.+|+|||++ ++||++|+||||||.+.||+|+|||++.
T Consensus 96 ~~~~s~~~~~y~~VrrWtrk----vdlf~kD~I~IPIn~~~HW~LaVI~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (323)
T 3eay_A 96 NPNLSMAQRRHKRVRTWTRH----INIFNKDYIFVPVNESSHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQNDNKT 171 (323)
T ss_dssp -CCSCHHHHHHTTSGGGGTT----CCGGGCSEEEEEEEETTEEEEEEEECTTCSSCBCC---------------------
T ss_pred cccchhHHHHHHHHHHHHhh----cccccCCEEEEecCCCCceEEEEEecCCcccccccccccccccccccccccccccc
Confidence 368999999973 5899999999999999999999999974
Q ss_pred ----------------------------------CeEEEEcCCCCC-CHHHHHHHHHHHHHHHhhhhCCCC
Q 012548 424 ----------------------------------KKFQYLDSLKGR-DKKVLGDLARYFVEEVRDKCGKDI 459 (461)
Q Consensus 424 ----------------------------------k~I~yyDSLgg~-n~~vl~~L~~YL~~E~kdK~g~~~ 459 (461)
.||.|||||++. +..+++.|++||++||++|++...
T Consensus 172 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~pcIl~lDSL~~~~~~~~~~~Lr~YL~~E~~~k~~~~~ 242 (323)
T 3eay_A 172 IDNDLRTTSTLSLSAEDSQSTESNMSVPKKMCKRPCILILDSLKAASVQNTVQNLREYLEVEWEVKLKTHR 242 (323)
T ss_dssp ----------------------------CCCCBCSEEEEECSSCCSSHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred cccccccccccccccccccccccccccccccCCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHhhcCCCc
Confidence 279999999996 478999999999999999986543
No 5
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A
Probab=99.95 E-value=2.3e-27 Score=222.16 Aligned_cols=126 Identities=17% Similarity=0.238 Sum_probs=107.0
Q ss_pred CceEEccccccccCCCCcccHHHHHHHHHHHHHhhhcCCccccceEEec---hhHHHhhhcCCCCCChhhHhhhhhcccc
Q 012548 318 TGIDITGKILQCLRPGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFN---TFFYNKLACGNKGYDFRAVKRWTSAKKL 394 (461)
Q Consensus 318 ~gI~It~~DL~~L~p~~WLNDeIINFYL~lL~er~~~ep~~~~kvh~FN---SFFy~kL~~~k~g~~y~~VkRWTkrkKv 394 (461)
.++.|+.+|+.+|.+++||||+|||||+++|.++...+ ..+++|+|| ||||..+ . +|+.|++|++.
T Consensus 9 ~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~--~~~~~~~~~p~~s~f~~~~-~-----~~~~v~~~~~~--- 77 (212)
T 2bkr_A 9 MDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHD--SSDHVSFISPEVTQFIKCT-S-----NPAEIAMFLEP--- 77 (212)
T ss_dssp TTEEEEHHHHHTTSTTSCCBHHHHHHHHHHHHHTTTGG--GTTTEEEECHHHHHHHHHC-C-----CHHHHHHHHGG---
T ss_pred CCEEEeHHHHhhcCCCCCcCHHHHHHHHHHHHHhhccC--CCCcEEEEChHHHHHHHhC-C-----CHHHHHHHhcc---
Confidence 58999999999999999999999999999999987433 246899999 9999554 2 47899999974
Q ss_pred cCCccccceEEeeecc-------CCceeEEEeeeCCCeEEEEcCCCCCCHHHHHHHHHHHHHHHhhhh
Q 012548 395 GYGLIECDKIFVPIHK-------QIHWCLAVIDRKDKKFQYLDSLKGRDKKVLGDLARYFVEEVRDKC 455 (461)
Q Consensus 395 ~idLfekD~IfIPIN~-------gsHWsLaVI~~k~k~I~yyDSLgg~n~~vl~~L~~YL~~E~kdK~ 455 (461)
.+++++++||||||. ++||+|+||+++.++|+|||||++.+...++.|..+|....+.+.
T Consensus 78 -~~l~~~~~i~iPIn~n~~~~~~~~HW~L~vi~~~~~~i~~~DSl~~~n~~~~~~l~~~l~~~l~~~~ 144 (212)
T 2bkr_A 78 -LDLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDKNSFFHYDSHSRSNSVHAKQVAEKLEAFLGRKG 144 (212)
T ss_dssp -GTGGGCSEEEEEEECCCSSSSBCCCEEEEEEEGGGTEEEEECSSTTTTHHHHHHHHHHHHHHHSCTT
T ss_pred -cccccCCEEEEEEecCCCCCCCCCCeEEEEEEecCCeEEEEeCCCCCCHHHHHHHHHHHHHHhCCcc
Confidence 479999999999995 799999999999999999999999998766666666666555443
No 6
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A
Probab=99.86 E-value=5.2e-22 Score=183.99 Aligned_cols=109 Identities=24% Similarity=0.373 Sum_probs=82.9
Q ss_pred CCCcccHHHHHHHHHHHHHhhhcCCccccceEEechhHHHhhhcCCCCCChhhHhhhhhcccccCCccccceEEeeecc-
Q 012548 332 PGAWLNDEVINVYLGLLKEREKREPQKFLKCHFFNTFFYNKLACGNKGYDFRAVKRWTSAKKLGYGLIECDKIFVPIHK- 410 (461)
Q Consensus 332 p~~WLNDeIINFYL~lL~er~~~ep~~~~kvh~FNSFFy~kL~~~k~g~~y~~VkRWTkrkKv~idLfekD~IfIPIN~- 410 (461)
+++||||+||||||++|.++...++. ..++|||+++++..+... +..+|..+.+|++. .++ +|+||||||.
T Consensus 1 ~~~WLND~iI~fy~~~L~~~~~~~~~-~~~v~f~~p~~~~~l~~~-~~~~~~~~~~~~~~----~~~--~~~i~iPin~~ 72 (186)
T 2oix_A 1 ATSWLLDGHLRAYTDDLARRLRGEPN-AHLLHFADSQVVTMLSSA-DPDQQARAQRLLAG----DDI--PPIVFLPINQP 72 (186)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTTTSTT-GGGEEECCHHHHHHTTCS-SHHHHHHHHHHHHS----TTS--CSEEEEEEEET
T ss_pred CCCCcChHHHHHHHHHHHHHhhhccC-cceEEEECHHHHHHHHhC-CHHHHHHHHHHccc----ccc--cCEEEEEEeCC
Confidence 47899999999999999998754432 245999998766655543 11246788888752 223 9999999998
Q ss_pred CCceeEEEeeeCCCeE---EEEcCCCCCCHH---HHHHHHHHHH
Q 012548 411 QIHWCLAVIDRKDKKF---QYLDSLKGRDKK---VLGDLARYFV 448 (461)
Q Consensus 411 gsHWsLaVI~~k~k~I---~yyDSLgg~n~~---vl~~L~~YL~ 448 (461)
++||+|+||+.++++| +|||||++.+.. +++.|+.||.
T Consensus 73 ~~HWsLlvi~~~~~~~~~~~~~DSl~~~~~~~~~l~~~l~~~l~ 116 (186)
T 2oix_A 73 NAHWSLLVVDRRNKDAVAAYHYDSMAQKDPQQRYLADMAAYHLG 116 (186)
T ss_dssp TTEEEEEEEECSSTTSCEEEEECCCSSCCHHHHHHHHHHHHHTT
T ss_pred CCccEEEEEECCCCeeeeeEEEcCCCCCCHHHHHHHHHHHHHhC
Confidence 8999999999999999 999999998754 4445555543
No 7
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=66.92 E-value=6.4 Score=37.25 Aligned_cols=31 Identities=13% Similarity=0.321 Sum_probs=28.2
Q ss_pred CCceeEEEeeeCCCeEEEEcCCCCCCHHHHH
Q 012548 411 QIHWCLAVIDRKDKKFQYLDSLKGRDKKVLG 441 (461)
Q Consensus 411 gsHWsLaVI~~k~k~I~yyDSLgg~n~~vl~ 441 (461)
|.||.-...++..++++.||.+|-++.++.+
T Consensus 52 GvHWiA~Aw~P~s~~~YmFDPfG~sd~~L~q 82 (204)
T 4ekf_A 52 GVHWMAFAWNPRSKTCYLFEPFGFSDQRLKQ 82 (204)
T ss_dssp CCCEEEEEEETTTTEEEEECTBTTCSHHHHH
T ss_pred ceeEEEeEecCCcceEEEeCCCCCCHHHHHH
Confidence 8999999999999999999999999986443
No 8
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Probab=14.62 E-value=2.3e+02 Score=23.61 Aligned_cols=34 Identities=12% Similarity=0.196 Sum_probs=28.6
Q ss_pred CccccceEEeeeccCCceeEEEeeeCCCeEEEEc
Q 012548 397 GLIECDKIFVPIHKQIHWCLAVIDRKDKKFQYLD 430 (461)
Q Consensus 397 dLfekD~IfIPIN~gsHWsLaVI~~k~k~I~yyD 430 (461)
.++..|++.+|...+..|.+++||.-.+.+..+-
T Consensus 12 ~~~~~D~~~~~~~~g~~yl~~~iD~~Sr~i~~~~ 45 (162)
T 1cxq_A 12 QIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQ 45 (162)
T ss_dssp CEEEEEEEECGGGTTSCEEEEEEETTTCCEEEEE
T ss_pred CEEEeeeeecccCCCCEEEEEEEEcCCCeEEEEE
Confidence 5678899988988888999999999988877663
No 9
>2cxa_A Leucyl/phenylalanyl-tRNA-protein transferase; aminoacyl-tRNA, protein degradation, structural genomics, NPPSFA; HET: MSE; 1.60A {Escherichia coli} SCOP: d.108.1.6 PDB: 2dps_A 2dpt_A* 2z3o_A* 2z3k_A* 2z3l_A* 2z3m_A* 2z3n_A* 2z3p_A*
Probab=14.21 E-value=78 Score=30.98 Aligned_cols=21 Identities=24% Similarity=0.563 Sum_probs=17.0
Q ss_pred CCCCcccHHHHHHHHHHHHHh
Q 012548 331 RPGAWLNDEVINVYLGLLKER 351 (461)
Q Consensus 331 ~p~~WLNDeIINFYL~lL~er 351 (461)
+++.||+++||..|.++-..-
T Consensus 124 ~~gTWI~~ei~~aY~~LH~~G 144 (256)
T 2cxa_A 124 EEGTWITRGVVEAYHRLHELG 144 (256)
T ss_dssp --CTTCCHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHhCC
Confidence 568999999999999998653
No 10
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=8.40 E-value=40 Score=28.45 Aligned_cols=15 Identities=27% Similarity=0.182 Sum_probs=12.8
Q ss_pred ccCCccccccccccC
Q 012548 42 TLISSNSTVSRMSRY 56 (461)
Q Consensus 42 ~~~~~~~~~~~~~~y 56 (461)
-++-|.||||||+|+
T Consensus 67 ~lGiS~stISRi~r~ 81 (101)
T 1jhg_A 67 ELGAGIATITRGSNS 81 (101)
T ss_dssp HHCCCHHHHHHHHHH
T ss_pred HHCCChhhhhHHHHH
Confidence 567899999999875
Done!