Query 012549
Match_columns 461
No_of_seqs 118 out of 583
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 03:48:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012549.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012549hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02620 indole-3-acetic acid- 100.0 4E-104 8E-109 845.7 36.7 430 11-453 15-450 (612)
2 PLN02247 indole-3-acetic acid- 100.0 1E-100 2E-105 820.8 36.7 426 14-453 7-444 (606)
3 PLN02249 indole-3-acetic acid- 100.0 2.1E-94 4.6E-99 777.3 36.2 415 15-452 18-436 (597)
4 PF03321 GH3: GH3 auxin-respon 100.0 2.9E-93 6.2E-98 765.0 25.8 391 20-454 2-399 (528)
5 COG1541 PaaK Coenzyme F390 syn 99.8 8.9E-20 1.9E-24 189.4 20.4 294 28-447 20-323 (438)
6 TIGR03335 F390_ftsA coenzyme F 99.8 1.5E-19 3.3E-24 191.0 14.9 299 28-450 11-323 (445)
7 TIGR02304 aden_form_hyp probab 99.8 5.9E-18 1.3E-22 178.1 17.2 269 29-447 22-316 (430)
8 TIGR02155 PA_CoA_ligase phenyl 99.7 1.3E-16 2.9E-21 166.7 16.4 94 29-132 6-102 (422)
9 PRK09274 peptide synthase; Pro 97.9 0.00038 8.3E-09 75.0 17.1 38 310-351 287-328 (552)
10 PRK06334 long chain fatty acid 97.8 0.00065 1.4E-08 73.5 16.7 38 310-351 298-338 (539)
11 PF00501 AMP-binding: AMP-bind 97.7 0.00074 1.6E-08 69.6 15.2 101 310-434 276-399 (417)
12 PRK05677 long-chain-fatty-acid 97.7 0.0013 2.7E-08 71.4 17.5 98 310-434 325-444 (562)
13 PRK04813 D-alanine--poly(phosp 97.7 0.00045 9.6E-09 73.0 13.4 39 310-351 259-299 (503)
14 PRK07529 AMP-binding domain pr 97.6 0.0013 2.9E-08 72.6 16.6 103 310-434 332-456 (632)
15 PRK06060 acyl-CoA synthetase; 97.6 0.0014 3.1E-08 73.2 16.5 99 310-434 259-376 (705)
16 PRK13295 cyclohexanecarboxylat 97.6 0.00081 1.8E-08 72.6 13.7 98 310-434 311-430 (547)
17 PRK06187 long-chain-fatty-acid 97.6 0.0016 3.5E-08 68.9 15.5 29 103-132 166-194 (521)
18 TIGR01733 AA-adenyl-dom amino 97.6 0.0055 1.2E-07 62.7 19.0 39 310-351 233-273 (408)
19 PRK07514 malonyl-CoA synthase; 97.5 0.0008 1.7E-08 71.3 12.5 100 309-434 267-388 (504)
20 TIGR03205 pimA dicarboxylate-- 97.5 0.0019 4.2E-08 69.5 15.4 28 103-131 191-218 (541)
21 PRK07788 acyl-CoA synthetase; 97.5 0.0019 4E-08 69.7 15.2 98 310-434 322-438 (549)
22 PRK10252 entF enterobactin syn 97.5 0.0018 3.9E-08 77.1 16.1 29 103-132 597-625 (1296)
23 PLN02574 4-coumarate--CoA liga 97.5 0.0025 5.5E-08 69.1 16.0 100 310-434 318-441 (560)
24 PRK06155 crotonobetaine/carnit 97.5 0.0053 1.2E-07 66.4 17.7 96 311-434 294-411 (542)
25 PRK07638 acyl-CoA synthetase; 97.4 0.0064 1.4E-07 64.4 17.6 94 318-434 258-372 (487)
26 PRK00174 acetyl-CoA synthetase 97.4 0.0034 7.3E-08 69.3 15.8 24 106-130 247-270 (637)
27 TIGR01734 D-ala-DACP-lig D-ala 97.4 0.0092 2E-07 63.2 18.2 27 105-132 142-168 (502)
28 PRK08633 2-acyl-glycerophospho 97.4 0.0035 7.6E-08 73.5 16.4 28 104-132 782-809 (1146)
29 PRK07656 long-chain-fatty-acid 97.4 0.0028 6.1E-08 67.1 14.2 30 102-132 164-193 (513)
30 PRK05605 long-chain-fatty-acid 97.4 0.0048 1E-07 66.9 16.1 100 310-434 335-456 (573)
31 PRK06145 acyl-CoA synthetase; 97.4 0.0017 3.6E-08 68.8 12.3 98 311-434 264-384 (497)
32 PRK04319 acetyl-CoA synthetase 97.4 0.0049 1.1E-07 67.0 16.1 98 310-434 322-443 (570)
33 PRK06839 acyl-CoA synthetase; 97.4 0.0047 1E-07 65.2 15.5 25 105-130 150-174 (496)
34 PRK08316 acyl-CoA synthetase; 97.4 0.0065 1.4E-07 64.5 16.6 28 103-131 170-197 (523)
35 PRK07786 long-chain-fatty-acid 97.3 0.0029 6.3E-08 68.2 14.0 94 318-434 294-410 (542)
36 PRK08180 feruloyl-CoA synthase 97.3 0.004 8.7E-08 68.5 15.1 28 104-132 209-236 (614)
37 TIGR02188 Ac_CoA_lig_AcsA acet 97.3 0.0051 1.1E-07 67.7 15.6 24 106-130 238-261 (625)
38 PRK06164 acyl-CoA synthetase; 97.3 0.012 2.6E-07 63.2 18.1 28 104-132 181-208 (540)
39 PRK05852 acyl-CoA synthetase; 97.3 0.0027 5.9E-08 68.2 13.1 25 107-132 179-203 (534)
40 PRK07867 acyl-CoA synthetase; 97.3 0.0018 3.9E-08 69.8 11.5 26 105-131 153-178 (529)
41 PRK09088 acyl-CoA synthetase; 97.3 0.0038 8.3E-08 66.0 13.8 26 105-131 136-161 (488)
42 PRK10946 entE enterobactin syn 97.3 0.0092 2E-07 64.3 16.5 28 104-132 182-209 (536)
43 PRK12583 acyl-CoA synthetase; 97.3 0.0057 1.2E-07 65.8 14.9 27 105-132 202-228 (558)
44 PRK07059 Long-chain-fatty-acid 97.2 0.0021 4.5E-08 69.5 11.3 27 104-131 204-230 (557)
45 TIGR03443 alpha_am_amid L-amin 97.2 0.0018 4E-08 77.8 11.9 30 103-133 414-443 (1389)
46 PRK07470 acyl-CoA synthetase; 97.2 0.0076 1.6E-07 64.5 15.4 28 103-131 162-189 (528)
47 PLN02330 4-coumarate--CoA liga 97.2 0.0063 1.4E-07 65.6 14.7 26 105-131 185-210 (546)
48 PRK12467 peptide synthase; Pro 97.2 0.0037 8E-08 82.5 15.2 30 103-133 655-684 (3956)
49 TIGR03098 ligase_PEP_1 acyl-Co 97.2 0.018 3.8E-07 61.2 17.9 26 106-132 163-188 (515)
50 PRK08974 long-chain-fatty-acid 97.2 0.0081 1.8E-07 64.9 15.4 28 104-132 206-233 (560)
51 PRK12467 peptide synthase; Pro 97.2 0.0012 2.7E-08 86.8 10.4 29 103-132 3236-3264(3956)
52 PLN02736 long-chain acyl-CoA s 97.2 0.0053 1.2E-07 68.1 13.8 27 104-131 221-247 (651)
53 PLN02860 o-succinylbenzoate-Co 97.1 0.0086 1.9E-07 65.0 14.6 38 310-351 287-327 (563)
54 PRK08279 long-chain-acyl-CoA s 97.1 0.0044 9.5E-08 67.8 12.3 28 104-132 199-226 (600)
55 TIGR02316 propion_prpE propion 97.1 0.013 2.8E-07 64.7 16.0 26 104-130 232-257 (628)
56 PRK10524 prpE propionyl-CoA sy 97.1 0.0098 2.1E-07 65.5 15.0 25 105-130 234-258 (629)
57 PRK13388 acyl-CoA synthetase; 97.1 0.0072 1.6E-07 65.3 13.7 29 102-131 148-176 (540)
58 PRK08314 long-chain-fatty-acid 97.1 0.0066 1.4E-07 65.2 13.0 27 105-132 191-217 (546)
59 COG1022 FAA1 Long-chain acyl-C 97.1 0.0065 1.4E-07 67.2 13.0 86 318-435 357-461 (613)
60 PRK12492 long-chain-fatty-acid 97.1 0.032 6.9E-07 60.5 18.3 26 106-132 209-234 (562)
61 PRK13382 acyl-CoA synthetase; 97.1 0.0045 9.8E-08 66.8 11.6 98 310-434 311-427 (537)
62 TIGR03208 cyc_hxne_CoA_lg cycl 97.0 0.0065 1.4E-07 65.4 12.5 27 104-131 195-221 (538)
63 PLN02614 long-chain acyl-CoA s 97.0 0.015 3.3E-07 64.9 15.6 28 104-132 223-250 (666)
64 PRK12316 peptide synthase; Pro 97.0 0.0032 6.9E-08 84.7 11.5 29 103-132 4693-4721(5163)
65 PRK12582 acyl-CoA synthetase; 96.9 0.0095 2.1E-07 65.7 12.9 28 104-132 220-247 (624)
66 TIGR02275 DHB_AMP_lig 2,3-dihy 96.9 0.02 4.4E-07 61.4 15.1 29 103-132 182-210 (527)
67 PRK07787 acyl-CoA synthetase; 96.9 0.032 6.8E-07 59.0 16.3 26 106-132 130-155 (471)
68 PTZ00237 acetyl-CoA synthetase 96.9 0.014 3.1E-07 64.8 14.3 23 106-129 256-278 (647)
69 PRK12406 long-chain-fatty-acid 96.9 0.016 3.4E-07 61.8 14.0 97 311-434 271-390 (509)
70 PRK03640 O-succinylbenzoic aci 96.9 0.035 7.5E-07 58.5 16.4 25 105-130 142-166 (483)
71 PLN02861 long-chain-fatty-acid 96.8 0.011 2.4E-07 65.9 12.7 27 104-131 220-246 (660)
72 PLN02387 long-chain-fatty-acid 96.8 0.041 8.9E-07 61.8 17.2 27 104-131 250-276 (696)
73 PRK08308 acyl-CoA synthetase; 96.8 0.022 4.8E-07 59.2 14.0 27 105-132 102-128 (414)
74 COG1021 EntE Peptide arylation 96.8 0.0057 1.2E-07 63.6 8.9 25 105-130 190-214 (542)
75 PRK06710 long-chain-fatty-acid 96.8 0.054 1.2E-06 58.6 17.1 26 105-131 207-232 (563)
76 PRK08315 AMP-binding domain pr 96.8 0.037 8E-07 59.6 15.7 27 104-131 199-225 (559)
77 PRK13383 acyl-CoA synthetase; 96.8 0.028 6E-07 60.1 14.6 98 310-434 291-407 (516)
78 PRK08751 putative long-chain f 96.7 0.018 3.8E-07 62.2 13.0 28 104-132 208-235 (560)
79 PRK12316 peptide synthase; Pro 96.7 0.02 4.3E-07 77.5 15.8 28 104-132 3196-3223(5163)
80 PRK05857 acyl-CoA synthetase; 96.7 0.027 5.9E-07 60.8 14.0 28 103-131 168-195 (540)
81 TIGR02262 benz_CoA_lig benzoat 96.7 0.047 1E-06 58.1 15.4 29 103-132 160-188 (508)
82 PLN02246 4-coumarate--CoA liga 96.6 0.014 2.9E-07 62.9 10.6 27 104-131 179-205 (537)
83 PRK05691 peptide synthase; Val 96.5 0.045 9.7E-07 73.2 16.9 30 102-132 3867-3896(4334)
84 PTZ00342 acyl-CoA synthetase; 96.5 0.047 1E-06 62.1 14.8 27 104-131 304-330 (746)
85 PLN02654 acetate-CoA ligase 96.5 0.055 1.2E-06 60.4 15.0 25 105-130 276-300 (666)
86 COG0318 CaiC Acyl-CoA syntheta 96.5 0.023 4.9E-07 61.8 11.6 36 312-351 292-330 (534)
87 PLN02430 long-chain-fatty-acid 96.4 0.099 2.1E-06 58.4 16.9 29 103-132 219-247 (660)
88 PRK05691 peptide synthase; Val 96.4 0.059 1.3E-06 72.1 16.9 40 310-353 1387-1429(4334)
89 PRK06087 short chain acyl-CoA 96.3 0.043 9.3E-07 59.1 12.8 26 105-131 188-213 (547)
90 COG0365 Acs Acyl-coenzyme A sy 96.3 0.11 2.3E-06 56.9 15.6 27 102-130 170-196 (528)
91 PRK06188 acyl-CoA synthetase; 96.3 0.032 7E-07 59.6 11.4 26 106-132 170-195 (524)
92 PF04443 LuxE: Acyl-protein sy 96.2 0.089 1.9E-06 54.9 13.8 85 32-131 30-115 (365)
93 PRK06814 acylglycerophosphoeth 96.0 0.11 2.3E-06 61.5 14.9 26 104-130 793-818 (1140)
94 PRK08008 caiC putative crotono 96.0 0.22 4.9E-06 53.0 16.1 28 103-131 172-199 (517)
95 PTZ00216 acyl-CoA synthetase; 95.9 0.17 3.7E-06 56.8 15.5 29 103-132 263-291 (700)
96 PRK05620 long-chain-fatty-acid 95.9 0.21 4.6E-06 54.3 15.7 27 103-130 180-206 (576)
97 PRK08043 bifunctional acyl-[ac 95.8 0.21 4.6E-06 56.2 15.7 27 104-131 365-391 (718)
98 PRK07008 long-chain-fatty-acid 95.8 0.15 3.4E-06 54.9 14.0 27 103-130 175-201 (539)
99 PRK08276 long-chain-fatty-acid 95.6 0.33 7.1E-06 51.5 15.4 24 106-130 142-165 (502)
100 PRK03584 acetoacetyl-CoA synth 95.5 0.35 7.5E-06 53.7 15.5 24 106-130 265-288 (655)
101 PRK07768 long-chain-fatty-acid 95.3 0.51 1.1E-05 50.7 15.9 28 103-131 151-178 (545)
102 PRK06018 putative acyl-CoA syn 95.0 0.17 3.8E-06 54.5 10.9 36 310-351 293-331 (542)
103 KOG1180 Acyl-CoA synthetase [L 94.3 0.87 1.9E-05 49.6 13.7 125 283-434 389-526 (678)
104 PRK07868 acyl-CoA synthetase; 89.2 1.3 2.8E-05 52.2 8.6 37 311-351 720-757 (994)
105 KOG1179 Very long-chain acyl-C 88.4 0.51 1.1E-05 51.4 4.1 28 99-128 238-265 (649)
106 KOG1256 Long-chain acyl-CoA sy 88.3 0.98 2.1E-05 50.5 6.4 111 11-132 163-282 (691)
107 PRK13390 acyl-CoA synthetase; 87.3 4 8.8E-05 43.2 10.4 36 311-351 270-308 (501)
108 PRK13391 acyl-CoA synthetase; 86.2 3.4 7.4E-05 44.0 9.1 35 312-351 276-313 (511)
109 PRK07798 acyl-CoA synthetase; 85.9 4 8.7E-05 43.2 9.4 36 311-350 296-334 (533)
110 PRK06178 acyl-CoA synthetase; 81.7 7.2 0.00016 42.2 9.4 27 104-131 209-235 (567)
111 TIGR02372 4_coum_CoA_lig 4-cou 81.5 1.8 3.9E-05 45.3 4.4 42 84-132 81-122 (386)
112 PRK07769 long-chain-fatty-acid 76.7 8.7 0.00019 42.4 8.2 27 104-131 180-206 (631)
113 PLN03102 acyl-activating enzym 74.7 7 0.00015 42.7 6.7 25 105-130 187-211 (579)
114 PRK05851 long-chain-fatty-acid 73.6 9.6 0.00021 40.9 7.4 28 104-132 152-179 (525)
115 PRK07445 O-succinylbenzoic aci 72.8 5.8 0.00013 42.0 5.3 27 104-131 120-146 (452)
116 PRK07824 O-succinylbenzoic aci 72.2 2.9 6.2E-05 42.4 2.7 27 105-132 36-62 (358)
117 TIGR01923 menE O-succinylbenzo 70.2 12 0.00025 38.7 6.8 29 103-132 110-138 (436)
118 PRK07445 O-succinylbenzoic aci 69.8 3.7 8E-05 43.5 3.0 35 311-351 230-267 (452)
119 PLN03051 acyl-activating enzym 68.7 18 0.0004 38.5 8.1 26 104-130 119-144 (499)
120 TIGR01923 menE O-succinylbenzo 68.1 4.2 9.1E-05 42.0 3.0 35 311-351 219-256 (436)
121 PRK05850 acyl-CoA synthetase; 65.9 23 0.00049 38.4 8.3 26 105-131 161-186 (578)
122 PRK09029 O-succinylbenzoic aci 63.0 5.4 0.00012 41.8 2.7 29 103-132 134-162 (458)
123 PRK08162 acyl-CoA synthetase; 61.7 77 0.0017 33.9 11.3 23 107-130 185-207 (545)
124 PRK05851 long-chain-fatty-acid 61.0 7.5 0.00016 41.8 3.3 29 406-434 367-407 (525)
125 PRK12476 putative fatty-acid-- 59.2 25 0.00054 38.6 7.1 27 104-131 193-219 (612)
126 PRK07769 long-chain-fatty-acid 57.1 7.9 0.00017 42.7 2.8 37 311-351 306-350 (631)
127 PRK09192 acyl-CoA synthetase; 55.4 40 0.00086 36.7 7.8 27 105-132 177-203 (579)
128 KOG1176 Acyl-CoA synthetase [L 53.0 49 0.0011 36.5 8.0 55 310-367 298-357 (537)
129 PLN03051 acyl-activating enzym 52.6 7.5 0.00016 41.5 1.6 37 311-351 236-276 (499)
130 PRK12476 putative fatty-acid-- 52.1 13 0.00028 40.8 3.4 33 318-351 322-361 (612)
131 TIGR01217 ac_ac_CoA_syn acetoa 51.0 31 0.00068 38.4 6.3 23 106-129 266-288 (652)
132 PLN03102 acyl-activating enzym 49.9 8.6 0.00019 42.0 1.6 25 324-351 313-337 (579)
133 PRK09192 acyl-CoA synthetase; 49.0 12 0.00027 40.6 2.6 28 406-433 406-449 (579)
134 KOG1177 Long chain fatty acid 47.3 14 0.00031 39.9 2.7 88 33-130 160-259 (596)
135 TIGR01217 ac_ac_CoA_syn acetoa 46.7 11 0.00024 42.0 1.8 36 311-350 384-423 (652)
136 PLN03052 acetate--CoA ligase; 45.7 15 0.00032 41.9 2.6 25 105-130 357-381 (728)
137 PRK06178 acyl-CoA synthetase; 45.4 16 0.00034 39.5 2.8 27 324-351 340-366 (567)
138 PLN02479 acetate-CoA ligase 45.0 11 0.00024 40.8 1.5 22 108-130 199-220 (567)
139 PRK07798 acyl-CoA synthetase; 43.6 11 0.00024 39.9 1.2 23 108-131 167-189 (533)
140 PRK05850 acyl-CoA synthetase; 41.6 13 0.00029 40.2 1.5 38 310-351 287-332 (578)
141 PRK09029 O-succinylbenzoic aci 39.0 76 0.0016 33.1 6.6 34 312-351 241-277 (458)
142 PRK08162 acyl-CoA synthetase; 35.4 18 0.00038 38.8 1.2 30 318-350 301-332 (545)
143 PLN03052 acetate--CoA ligase; 34.8 1.2E+02 0.0026 34.6 7.7 38 310-351 470-510 (728)
144 PF12690 BsuPI: Intracellular 30.6 38 0.00082 27.6 2.1 22 407-428 21-44 (82)
145 cd05830 Sortase_D_5 Sortase D 29.3 44 0.00095 29.6 2.5 31 402-434 62-92 (137)
146 cd04473 S1_RecJ_like S1_RecJ_l 28.8 77 0.0017 25.0 3.6 36 399-434 7-62 (77)
147 cd05829 Sortase_E Sortase E (S 26.9 56 0.0012 29.3 2.8 31 402-434 69-100 (144)
148 cd06166 Sortase_D_5 Sortase D 26.3 49 0.0011 28.8 2.2 33 400-434 59-91 (126)
149 cd05828 Sortase_D_4 Sortase D 26.2 59 0.0013 28.4 2.7 32 402-435 58-89 (127)
150 KOG1176 Acyl-CoA synthetase [L 26.2 38 0.00083 37.3 1.8 24 106-130 186-209 (537)
151 PRK13390 acyl-CoA synthetase; 26.1 33 0.00072 36.3 1.3 19 107-126 151-169 (501)
152 COG2026 RelE Cytotoxic transla 24.7 41 0.0009 27.8 1.4 20 412-431 43-62 (90)
153 cd03692 mtIF2_IVc mtIF2_IVc: t 24.5 75 0.0016 25.7 2.8 28 403-433 57-84 (84)
154 PF00659 POLO_box: POLO box du 24.5 1.1E+02 0.0024 23.5 3.7 35 343-382 7-41 (68)
155 TIGR01076 sortase_fam LPXTG-si 22.2 66 0.0014 28.4 2.3 31 402-434 60-90 (136)
156 COG5415 Predicted integral mem 22.1 1.5E+02 0.0033 28.7 4.7 68 21-95 98-178 (251)
157 PF14031 D-ser_dehydrat: Putat 22.1 41 0.00089 28.1 0.8 28 416-445 58-85 (94)
158 TIGR03784 marine_sortase sorta 22.0 81 0.0017 29.5 2.9 30 403-434 106-136 (174)
159 PF09629 YorP: YorP protein; 21.7 63 0.0014 25.0 1.7 23 422-444 4-26 (71)
160 cd04866 LigD_Pol_like_3 LigD_P 21.0 78 0.0017 30.9 2.6 49 100-149 121-171 (223)
161 TIGR02778 ligD_pol DNA polymer 20.7 71 0.0015 31.6 2.3 49 100-149 142-191 (245)
162 PF13974 YebO: YebO-like prote 20.5 1.2E+02 0.0026 24.9 3.1 21 27-47 34-54 (80)
No 1
>PLN02620 indole-3-acetic acid-amido synthetase
Probab=100.00 E-value=3.6e-104 Score=845.74 Aligned_cols=430 Identities=32% Similarity=0.573 Sum_probs=400.5
Q ss_pred CcCCCccHHHHHHHHHHHhcHHHHHHHHHHHHHHhcCCChHHHHhhcCccCCCCCCCcChHHhhhcCCCcccccchHHHH
Q 012549 11 GYGNNYECDIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHADLEPYIQ 90 (461)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~iL~~na~T~ygr~~~~~~~~~~f~~i~s~edFr~~VPl~tYed~~pyIe 90 (461)
+.+...+++.++.++..++|+.++|+++|++||++|++|+|||+| +|++|+++++||++|||++|||++|||+
T Consensus 15 ~~~~~~~~~~l~~ie~~t~~~~~vQ~~vL~~IL~~n~~Teyg~~~-------~f~~i~~~~~F~~~VPv~~Yedl~pyI~ 87 (612)
T PLN02620 15 YNLAEKNKKALQFIEDVTSNADEVQKRVLEEILSRNAHVEYLQRH-------GLNGRTDRETFKKVMPVITYEDIQPDIN 87 (612)
T ss_pred CccccchHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccChhHHhc-------CCCCCCCHHHHHHhCCCccHHHhHHHHH
Confidence 445566688899999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHhcCCCCCcccCcccceeecccCCCCCcccccccChhcHHHHHHHHHHHHHHHHhcCC-CCCCCcEEEEEecCCccccC
Q 012549 91 RIADGDTASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRLAAAYRSRVYP-IREGGRILEFIYSSKQFKTK 169 (461)
Q Consensus 91 Ri~~Ge~~~vl~~~pi~~f~~TSGTT~G~~K~IP~T~~~~~~~~~~~~~~~~~~~~~~p-~~~~gk~l~~~~~~~~~~t~ 169 (461)
||++||.++|||++|+.+|++|||||+|++|+||+|+++++.++.++.+|+.++++.+| +. .||.+|+++...+.+|+
T Consensus 88 Ri~~Ge~s~vL~~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~~~~~~~~~~~~~~~~~p~l~-~Gk~~~~~~~~~~~~T~ 166 (612)
T PLN02620 88 RIANGDTSPILCSKPISEFLTSSGTSGGERKLMPTIEEELGRRSLLYSLLMPVMSQFVPGLE-KGKGMYFLFIKSEAKTP 166 (612)
T ss_pred HHHcCCCCCccCCCChhhhhhcCCCCCCceeeeecCHHHHHHHHHHHHHHHHHHHhhCCCcc-cCcEEEEEecccCccCC
Confidence 99999967999999999999999999889999999999999988889999999999888 77 89999999999999999
Q ss_pred CCceeeccccccccchhHHhhhhhhccccCCchhhhccCChhhhHHHHHHhcccCCCCeeEEEecchHHHHHHHHHHHHH
Q 012549 170 GGLTAGTATTHYYASEEFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEEC 249 (461)
Q Consensus 170 ~Gi~~G~~S~~~~~~~~f~~~~~~~~~~~~~P~ev~~~~d~~~~~Y~~Ll~aL~~~~~l~~i~~~f~~~ll~~~~~l~~~ 249 (461)
+|||+|++|+.++++.+|+.++......|++|.+++.++|..+++||||||||.++++|..++++|+++|+.++++|+++
T Consensus 167 ~Gip~g~~st~~y~s~~f~~~~~~~~~~~~sP~ev~~~~D~~qs~Y~~LLcgL~~~~~v~~v~svfa~~ll~a~~~Le~~ 246 (612)
T PLN02620 167 GGLVARPVLTSYYKSSHFKDRPYDPYTNYTSPNETILCPDSYQSMYSQMLCGLCQHKEVLRVGAVFASGFIRAIRFLEKH 246 (612)
T ss_pred CCcccccccchhhhhhhhhhcccccccceeCcHHhccCCCHHHHHHHHHHHHhhcchhhceEEeechHHHHHHHHHHHHH
Confidence 99999999999999999998887777789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcccCCCCCCCcHHHHHhhcccCCCcHHHHHHHHHHhcccccCCccCcccCCCCCCceEEEEEcCChHHHHH
Q 012549 250 WQDICIDVREGSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGSMQHYLK 329 (461)
Q Consensus 250 w~~l~~dI~~Gt~~~~~i~~~~~r~~l~~~l~~~p~~A~~L~~~~~~~~~~~~~gi~~~lWP~L~~v~~~~~G~~~~y~~ 329 (461)
|++||+||++|+++ .+++++.+|++|.+.++|||++|+.|+++|.+ + +|.|++++|||||++|+||+||+|++|++
T Consensus 247 w~~L~~DI~~G~ls-~~itd~~~R~av~~~L~p~pelA~~i~~~c~~-~--~w~gii~rLWP~lk~I~~~~tGsm~~Y~p 322 (612)
T PLN02620 247 WTLLCRDIRTGTID-SQITDPSVREAVMKILKPDPKLADFVEAECRK-E--SWQGIITRLWPNTKYVDVIVTGTMSQYIP 322 (612)
T ss_pred HHHHHHHHhcCCCC-ccCCCHHHHHHHHhhcCCCHHHHHHHHHHhcc-c--cccCcHHHhCCCCcEEEEECCCCHHHHHH
Confidence 99999999999999 88999999999999999999999999999998 5 89999999999999999999999999999
Q ss_pred HHHhHhCCCCcccCccccCceeEEeeCCCCCCCCCceeeeeCCceEEEEeecCccccC-----CCCCCCCCCCCcccccC
Q 012549 330 KLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQD-----CNSAIDDFIEDEPVPLS 404 (461)
Q Consensus 330 ~l~~~~~~vpi~~~~Y~aSEg~igi~~~~~~~~~~~~~~l~p~~~ffEFip~~~~~~~-----~~~~~~~~~~~~~l~l~ 404 (461)
+|+.|+|++|+++.+|+||||+||||++|.|+++.++|+|+|+.+||||||+++.+.. .+...++.+++++|.++
T Consensus 323 ~L~~y~gglpl~~~~Y~ASE~~~ginl~P~~~p~~~sy~L~p~~~yFEFip~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ 402 (612)
T PLN02620 323 TLDYYSNGLPLVCTMYASSECYFGVNLNPLCKPSEVSYTLIPTMAYFEFLPVHRNNGVTNSISLPKSLNEKEQQELVDLV 402 (612)
T ss_pred HHHHHcCCCccccccccccceEEEeccCCCCCcccceeeecCCcEEEEEeeccCcccccccccccccccccccCccccHH
Confidence 9999999999999999999999999999999888889999999999999998853210 00001112457799999
Q ss_pred CCcCCCeEEEEEeccCceeccccCCEEEecccccCCCceehhhHHhhcc
Q 012549 405 QVKLGQEYEIVLTSFTGKSFISISIKIPISMNRSFSCSILYVFFFFLQT 453 (461)
Q Consensus 405 Ele~G~~YelVvTt~~GLyRYriGDvV~v~g~~~~~cp~~~~~~~~~~~ 453 (461)
|||+|++|||||||.+||||||+||||+|+|| +|+||.|+|++|-.++
T Consensus 403 ev~~G~~YelvvTt~~GLyRYrlGDvv~V~Gf-~n~~P~~~Fv~R~~~~ 450 (612)
T PLN02620 403 DVKLGQEYELVVTTYAGLYRYRVGDVLRVAGF-KNKAPQFSFICRKNVV 450 (612)
T ss_pred HccCCCeEEEEEEecCceEEEecCCEEEEeee-cCCCceEEEEeecCce
Confidence 99999999999999999999999999999999 8999999999996654
No 2
>PLN02247 indole-3-acetic acid-amido synthetase
Probab=100.00 E-value=9.8e-101 Score=820.85 Aligned_cols=426 Identities=31% Similarity=0.543 Sum_probs=389.5
Q ss_pred CCccHHHHHHHHHHHhcHHHHHHHHHHHHHHhcCCChHHHHhhcCccCCCCCCCcChHHhhhcCCCcccccchHHHHHHh
Q 012549 14 NNYECDIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHADLEPYIQRIA 93 (461)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~Q~~~L~~iL~~na~T~ygr~~~~~~~~~~f~~i~s~edFr~~VPl~tYed~~pyIeRi~ 93 (461)
...+++.++.++..++|+.++|+++|++||++|++|+|||+| .+ +|++.++||++|||++|||++|||+||+
T Consensus 7 ~~~~~~~~~~~e~~t~~~~~~Q~~vL~~iL~~n~~Teyg~~~-------~~-~i~~~e~Fk~~VPv~~Yedl~pyI~Ri~ 78 (606)
T PLN02247 7 PNDNEAGLKLLEDLTTNACQIQQQVLEEILTQNAGTEYLRSF-------LD-GESDKQSFKNKVPVVNYEDIKPCIERIA 78 (606)
T ss_pred CcchHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccChhhhhc-------Cc-cCCCHHHHHHhCCCccHHHhHHHHHHHH
Confidence 344588999999999999999999999999999999999888 45 8999999999999999999999999999
Q ss_pred cCCCCCcccCcccceeecccCCCCCcccccccChhcHHHHHHHHHHHHHHHHhcCC-CCCCCcEEEEEecCCccccCCCc
Q 012549 94 DGDTASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRLAAAYRSRVYP-IREGGRILEFIYSSKQFKTKGGL 172 (461)
Q Consensus 94 ~Ge~~~vl~~~pi~~f~~TSGTT~G~~K~IP~T~~~~~~~~~~~~~~~~~~~~~~p-~~~~gk~l~~~~~~~~~~t~~Gi 172 (461)
+||.+.+++++|+.+|++|||||+|++|+||+|+++++++..++.+|...+++..| +. .||.+|+++.+.+.+|++||
T Consensus 79 ~Ge~~~llt~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~~~~~~~l~~~~~~~~~p~l~-~Gk~~~~~~~~~~~~T~~Gi 157 (606)
T PLN02247 79 NGESSSIISAQPITELLTSSGTSGGQPKLMPSTAEELDRKTFFYNLLVPVMNKYVDGLD-QGKGMYLLFIKPEISTPSGL 157 (606)
T ss_pred cCCCCceeCCCCcceeeccCCCCCCceeEeeccHHHHHHHHHHHHHHHHHHHhcCCCcc-cCcEEEEEecCcCccCCCCc
Confidence 99954556699999999999999889999999999999887789999989988767 77 89999999999999999999
Q ss_pred eeeccccccccchhHHhhhhhhccccCCchhhhccCChhhhHHHHHHhcccCCCCeeEEEecchHHHHHHHHHHHHHHHH
Q 012549 173 TAGTATTHYYASEEFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECWQD 252 (461)
Q Consensus 173 ~~G~~S~~~~~~~~f~~~~~~~~~~~~~P~ev~~~~d~~~~~Y~~Ll~aL~~~~~l~~i~~~f~~~ll~~~~~l~~~w~~ 252 (461)
|+|++++.++++.+|+.++......|++|.+++.++|.++++||||||||.+++++..++++|+++++.+++.|+++|++
T Consensus 158 p~g~~~t~y~~s~~f~~~~~~~~~~~~sP~ev~~~~D~~qs~Y~~LLcgL~~~~~vl~v~svfa~s~l~a~~~Le~~we~ 237 (606)
T PLN02247 158 MARPVLTSYYKSSNFRNRPFNRYNVYTSPDETILCQDSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLEDHWKE 237 (606)
T ss_pred ccccccchhhccccccccccccccceeCcHHhhcCCCHHHHHHHHHHHHhhccccccEEEEeccHHHHHHHHHHHHHHHH
Confidence 99999999999999887765444689999999999999999999999999999888888999999999999999999999
Q ss_pred HHHHHHcccCCCCCCCcHHHHHhhcccC-CCcHHHHHHHHHHhcccccCCccCcccCCCCCCceEEEEEcCChHHHHHHH
Q 012549 253 ICIDVREGSLSSSRITLPKMRKAVLDTI-SPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGSMQHYLKKL 331 (461)
Q Consensus 253 l~~dI~~Gt~~~~~i~~~~~r~~l~~~l-~~~p~~A~~L~~~~~~~~~~~~~gi~~~lWP~L~~v~~~~~G~~~~y~~~l 331 (461)
||+||++|+++ .++++|.+|+++.+.+ +|+|++|++|+++|.+ + +|.|++++|||||++|+||++|+|++|+++|
T Consensus 238 L~~DI~~G~ls-~~it~p~~R~a~~~~l~~p~peLA~~l~~~c~~-~--~w~gi~~rLWP~lk~I~~~~tGsm~~Y~~~L 313 (606)
T PLN02247 238 LCSNIRTGCVS-DWITDPSCRNAVSSILSKPNSELADLIESECSG-K--SWEGIIKRLWPRTKYIEVIVTGSMAQYIPTL 313 (606)
T ss_pred HHHHHhcCCcc-cccCCHHHHHHHhhcccCCCHHHHHHHHHHhcc-c--CccccHHHhCCCCcEEEEECCCCHHHHHHHH
Confidence 99999999999 8899999999999999 6999999999999988 5 9999999999999999999999999999999
Q ss_pred HhHhCCCCcccCccccCceeEEeeCCCCCCCCCceeeeeCCceEEEEeecCccccCCCCCC-----CC-----CCCCccc
Q 012549 332 RHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAI-----DD-----FIEDEPV 401 (461)
Q Consensus 332 ~~~~~~vpi~~~~Y~aSEg~igi~~~~~~~~~~~~~~l~p~~~ffEFip~~~~~~~~~~~~-----~~-----~~~~~~l 401 (461)
+.|+|++|+++.+|+||||+||||++|.|+++.++|+|+|+.+||||||+++.+....+.. ++ .+++.+|
T Consensus 314 ~~y~gglpl~s~~Y~sSE~~~ginl~p~~~p~~~sy~L~p~~~yFEFip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 393 (606)
T PLN02247 314 EFYSGGLPLVSTMYASSECYFGINLKPLSDPSDVSYTLLPNMAYFEFLPVDKNNGEVIHFVQCNGTDDDDDALKEDLEIV 393 (606)
T ss_pred HHHcCCCceecccccccceEEEeccCcCCCccCCceeecCCcEEEEEeecCCCcccccccccccccccccccccccCcee
Confidence 9999999999999999999999999999988888999999999999999885421000000 00 1355699
Q ss_pred ccCCCcCCCeEEEEEeccCceeccccCCEEEecccccCCCceehhhHHhhcc
Q 012549 402 PLSQVKLGQEYEIVLTSFTGKSFISISIKIPISMNRSFSCSILYVFFFFLQT 453 (461)
Q Consensus 402 ~l~Ele~G~~YelVvTt~~GLyRYriGDvV~v~g~~~~~cp~~~~~~~~~~~ 453 (461)
.++|||+|++|||||||.+||||||+||||+|+|| +|+||.|+|++|-.++
T Consensus 394 ~l~evk~G~~YelVvTt~~GLYRYrlGDvv~V~GF-~n~~P~~~Fv~R~~~v 444 (606)
T PLN02247 394 DLVDVKVGHYYELVVTTFTGLYRYRVGDILMVTGF-YNNAPQFRFVQRRNVV 444 (606)
T ss_pred cHHHccCCCeEEEEEEecCceEEEecCCEEEEeee-cCCCceEEEEecCCce
Confidence 99999999999999999999999999999999999 8999999999996554
No 3
>PLN02249 indole-3-acetic acid-amido synthetase
Probab=100.00 E-value=2.1e-94 Score=777.28 Aligned_cols=415 Identities=30% Similarity=0.559 Sum_probs=379.7
Q ss_pred CccHHHHHHHHHHHhcHHHHHHHHHHHHHHhcCCChHHHHhhcCccCCCCCCCcChHHhhhcCCCcccccchHHHHHHhc
Q 012549 15 NYECDIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHADLEPYIQRIAD 94 (461)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~Q~~~L~~iL~~na~T~ygr~~~~~~~~~~f~~i~s~edFr~~VPl~tYed~~pyIeRi~~ 94 (461)
..+++.++.++..++||+++|+++|++||++|++|+|||+| +|++|+++++||++|||++|||++|||+||++
T Consensus 18 ~~~~~~l~~~e~~t~~~~~~Q~~vL~~iL~~n~~Teyg~~~-------gf~~i~~~~~F~~~VPv~~Yedl~pyIeRi~~ 90 (597)
T PLN02249 18 EKDVKALKFIEEMTRNPDSVQEKVLGEILSRNSNTEYLKRF-------DLNGAVDRKTFKSKVPVVTYEDLKTEIQRISN 90 (597)
T ss_pred CcHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccChhHHhc-------CCCCCCCHHHHHHhCCCccHHHhHHHHHHHHc
Confidence 34577789999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred CCCCCcccCcccceeecccCCCCCcccccccChhcHH--HHHHHHHHHHHHHHhcCC-CCCCCcEEEEEecCCccccCCC
Q 012549 95 GDTASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQ--TTLQIFRLAAAYRSRVYP-IREGGRILEFIYSSKQFKTKGG 171 (461)
Q Consensus 95 Ge~~~vl~~~pi~~f~~TSGTT~G~~K~IP~T~~~~~--~~~~~~~~~~~~~~~~~p-~~~~gk~l~~~~~~~~~~t~~G 171 (461)
||.++|||++||.+|++|||||+|++|+||+|+++++ .+..++.+|+... ..| +. .||.+++++...+..|.+|
T Consensus 91 Ge~~~vL~~~pi~~f~~SSGTT~g~~K~IP~T~~~l~~~~~~~~~~~~~~~~--~~~~l~-~Gk~l~~~~~~~~~~t~gG 167 (597)
T PLN02249 91 GDRSPILSSHPITEFLTSSGTSAGERKLMPTIEEDIDRRQLLGSLLMPVMNL--YVPGLD-KGKGLYFLFVKSESKTSGG 167 (597)
T ss_pred CCCCceeCCCchhhhcccCCCCCCceeEEeccHHHHHHHHHHHHHHHHHHhc--cCCccc-cCcEEEEEeccccccCCCC
Confidence 9867799999999999999999899999999999998 3445566663322 356 77 8999999998889999999
Q ss_pred ceeeccccccccchhHHhhhhhhccccCCchhhhccCChhhhHHHHHHhcccCCCCeeEEEecchHHHHHHHHHHHHHHH
Q 012549 172 LTAGTATTHYYASEEFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECWQ 251 (461)
Q Consensus 172 i~~G~~S~~~~~~~~f~~~~~~~~~~~~~P~ev~~~~d~~~~~Y~~Ll~aL~~~~~l~~i~~~f~~~ll~~~~~l~~~w~ 251 (461)
+|+|++++.++++.+|+.++ +...|++|.+++.+.|.++++||||||||..++++..|+++||+.++.++++|+++|+
T Consensus 168 ~p~~~~~~~~~~~~~f~~~~--~~~~~~~P~ev~~~~D~~~~~Y~~lL~gL~~~~~~~~i~~~~Ps~l~~~~~~l~~~we 245 (597)
T PLN02249 168 LPARPALTSYYKSDHFRTSD--YDNVYTSPNEAILCSDSSQSMYAQMLCGLLMRHEVLRLGAVFPSGLLRAISFLQNNWK 245 (597)
T ss_pred CccCcccccccccccccccc--ccccccCcHHhhcCCCHHHHHHHHHHHHHhhccccceEEEECcHHHHHHHHHHHHHHH
Confidence 99999999877777776543 3678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcccCCCCCCCcHHHHHhhcccC-CCcHHHHHHHHHHhcccccCCccCcccCCCCCCceEEEEEcCChHHHHHH
Q 012549 252 DICIDVREGSLSSSRITLPKMRKAVLDTI-SPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGSMQHYLKK 330 (461)
Q Consensus 252 ~l~~dI~~Gt~~~~~i~~~~~r~~l~~~l-~~~p~~A~~L~~~~~~~~~~~~~gi~~~lWP~L~~v~~~~~G~~~~y~~~ 330 (461)
++|+||++|+++ .++++|.+|+.|...+ .|+|++|++++++|++ + +|.|++++|||||++|+||++|+|.+|+++
T Consensus 246 el~~dI~~g~~~-~~~~~~~~~~~v~~i~g~P~~~la~~i~~~~~~-~--~~~gii~~lWPnl~~i~~~~~G~~~~Y~~~ 321 (597)
T PLN02249 246 ELAQDISTGTLS-SKIFDPAIKNRMSKILNKPDQELAEFLIGVCSQ-E--NWEGIITKIWPNTKYLDVIVTGAMAQYIPM 321 (597)
T ss_pred HHHHHHHhCCCc-ccccchHHHHHHHhhcCCCCHHHHHHHHHHhcc-c--cccccHHHhCCCCCeEEEEecCChHHHHHH
Confidence 999999999999 7899999999998888 6899999999999987 3 799999999999999999999999999999
Q ss_pred HHhHhCCCCcccCccccCceeEEeeCCCCCCCCCceeeeeCCceEEEEeecCccccCCCCCCCCCCCCcccccCCCcCCC
Q 012549 331 LRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQ 410 (461)
Q Consensus 331 l~~~~~~vpi~~~~Y~aSEg~igi~~~~~~~~~~~~~~l~p~~~ffEFip~~~~~~~~~~~~~~~~~~~~l~l~Ele~G~ 410 (461)
|++|+|++|+++++|+||||+||||+++.|+++.++|+|+|+.+||||||+++.++ +..+++.+|+++|||+|+
T Consensus 322 l~~~~g~~~~~~~~Y~ASEg~~gi~~~~~~~p~~~~~~l~~~~~ffEFiP~~~~~~------~~~~~~~~v~l~eVe~G~ 395 (597)
T PLN02249 322 LEYYSGGLPMASTIYASSESYFGINLNPMCKPSEVSYTIMPNMAYFEFLPHNHDGD------GALDETSLVELADVEVGK 395 (597)
T ss_pred HHHHcCCCccccccccccceEEEeecCCCCCCCCcceEecCCcEEEEeeecccCCc------ccCCCCcEecHHHcCCCC
Confidence 99999999999999999999999999999988778999999999999999885431 011467899999999999
Q ss_pred eEEEEEeccCceeccccCCEEEecccccCCCceehhhHHhhc
Q 012549 411 EYEIVLTSFTGKSFISISIKIPISMNRSFSCSILYVFFFFLQ 452 (461)
Q Consensus 411 ~YelVvTt~~GLyRYriGDvV~v~g~~~~~cp~~~~~~~~~~ 452 (461)
+|+|||||++|||||+|||+|+|+|| ++++|.++|..|-.+
T Consensus 396 ~Y~lVvTT~~GLyRY~iGDvVrvtgf-~~~~P~i~F~gR~~~ 436 (597)
T PLN02249 396 EYELVITTYAGLYRYRVGDILRVTGF-HNSAPQFKFIRRKNV 436 (597)
T ss_pred eEEEEEEcccceeEeecCCEEEEeec-cCCCcEEEEEccCCc
Confidence 99999999999999999999999999 889999999998433
No 4
>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin. The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.
Probab=100.00 E-value=2.9e-93 Score=765.02 Aligned_cols=391 Identities=30% Similarity=0.506 Sum_probs=312.2
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHhcCCChHHHHhhcCccCCCCCCCcChHH--hhhcCCCcccccchHHHHHHhcCCC
Q 012549 20 IIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDACEMETL--YTSLVPLASHADLEPYIQRIADGDT 97 (461)
Q Consensus 20 ~~~~~~~~~~~~~~~Q~~~L~~iL~~na~T~ygr~~~~~~~~~~f~~i~s~ed--Fr~~VPl~tYed~~pyIeRi~~Ge~ 97 (461)
.+++|++.++|++++|+++|++||++|++|+|||+| ||++|+|++| ||++|||++||||+|||+||++||
T Consensus 2 ~l~~f~~~~~~~~~~Q~~~L~~iL~~n~~T~yGr~~-------gf~~i~s~ed~~Fr~~VPi~~Yed~~pyIeR~~~Ge- 73 (528)
T PF03321_consen 2 VLKRFEKATKNPEQVQEEVLREILRRNADTEYGRDH-------GFAGIRSVEDESFRKRVPITDYEDYRPYIERIAEGE- 73 (528)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHCTTSHHHHCT-------T--S----HHHHHHHHS--BEHHHHHHHHHHHHTT--
T ss_pred hHHHHHHHHhCHHHHHHHHHHHHHHhhccCHhHHhc-------CCCCCCCcchHHHHHhCCCccHHHHHHHHHHHhcCC-
Confidence 478999999999999999999999999999999999 9999999999 999999999999999999999999
Q ss_pred CCcccCcccceeecccCCCCCcccccccChhcHHHHH--HHHHHHHHHHHhcCC-CCCCCcEEE--EEecCCccccCCCc
Q 012549 98 ASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQTTL--QIFRLAAAYRSRVYP-IREGGRILE--FIYSSKQFKTKGGL 172 (461)
Q Consensus 98 ~~vl~~~pi~~f~~TSGTT~G~~K~IP~T~~~~~~~~--~~~~~~~~~~~~~~p-~~~~gk~l~--~~~~~~~~~t~~Gi 172 (461)
.+|||++|+.+|++||||||+++|+||+|+++++.+. .++.+|+..+.+++| ....||.++ +...+.+..|++|+
T Consensus 74 ~~vL~~~~~~~f~~TSGTTg~~~K~IP~T~~~l~~~~~~~~~~~~~~~l~~~~p~~~~~gk~~~l~~~~~~~~~~t~~Gi 153 (528)
T PF03321_consen 74 ENVLTPGPPIYFALTSGTTGGKSKLIPYTKEFLKEFRRLGAIAAWLYYLYRNFPGLLFQGKSLYLSFSFAPPPLRTPGGI 153 (528)
T ss_dssp -CCTSSS--SEEEEEEEEETTEEEEEEESHHHHHHHHHHHHHHHHH--HHHHSSS--TTSE--EEEE------EE-TTS-
T ss_pred CCCCCCCCCCeEEeCCCCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHhcCcccccCCcceEEEeecCCCcccCCCCe
Confidence 6799999999999999999555999999999999966 568889888988999 522788444 33445778899999
Q ss_pred eeeccccccccchhHHhhhhhhccccCCchhhhccCChhhhHHHHHHhcccCCCCeeEEEecchHHHHHHHHHHHHHHHH
Q 012549 173 TAGTATTHYYASEEFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECWQD 252 (461)
Q Consensus 173 ~~G~~S~~~~~~~~f~~~~~~~~~~~~~P~ev~~~~d~~~~~Y~~Ll~aL~~~~~l~~i~~~f~~~ll~~~~~l~~~w~~ 252 (461)
|+|++|++++++ .+.+++.+|++|.+++.+.|..+++||||+|+|.+++||++|+++||++|+.++++|+++|++
T Consensus 154 ~~g~~s~~~~~~-----~~~~~~~~~~~P~~~~~~~~~~~~~y~~ll~~l~~~~~l~~i~~~~p~~l~~~~~~le~~~~~ 228 (528)
T PF03321_consen 154 PIGSISGIPYRM-----IPPWFRSWFTSPSEVIAAIDDWEAKYCHLLCALLQDRDLRMISGWFPSFLLLLFRLLEKHWEE 228 (528)
T ss_dssp EEE-HHHHHHT-------SCCHHG-BSS-HHHHT-S-HHHHHHHHHHHHHHCGGGEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred EEecccccchhh-----ChHHHccCccCCHHHHhcccHHHHHHHHHHHHhhcccCcCEEEeeCHHHHHHHHHHHHHhhhH
Confidence 999999999874 444555689999999999999999999999999977999999999999999999999999999
Q ss_pred HHHHHHcccCCCCCCCcHHHHHhhcccCCCcHHHHHHHHHHhcccccCCccCcccCCCCCCceEEEEEcCChHHHHHHHH
Q 012549 253 ICIDVREGSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGSMQHYLKKLR 332 (461)
Q Consensus 253 l~~dI~~Gt~~~~~i~~~~~r~~l~~~l~~~p~~A~~L~~~~~~~~~~~~~gi~~~lWP~L~~v~~~~~G~~~~y~~~l~ 332 (461)
+|+||++|+++ .++|||+||++|+++|++ + .+++++|||||++|+||++|+|.+|+++|+
T Consensus 229 l~~dI~~G~~~---------------~~~p~p~rA~~L~~~~~~----~-~~~~~~lWP~L~~v~~~~~g~~~~y~~~l~ 288 (528)
T PF03321_consen 229 LVEDIRDGTLS---------------LLRPNPERAAELRAEFEK----G-RGIPKRLWPNLKLVSCWGGGSMAPYAPKLR 288 (528)
T ss_dssp HHHHHHHTS-----------------C-S--HHHHHHHHHHHCC----S-TTHHHHHSTT--EEEEE-SGGGGGGHHHHH
T ss_pred hhHHhcCCccc---------------cCCCCHHHHHHHHHhhcc----c-CCCHHHhCCCCcEEEEEcCCChHHHHHHHH
Confidence 99999999999 358999999999999998 6 789999999999999999999999999999
Q ss_pred hHhCCCCcccCccccCceeEEeeCCCCCCCCCceeeeeCCceEEEEeecCccccCCCCCCCCCCCCcccccCCCcCCCeE
Q 012549 333 HYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEY 412 (461)
Q Consensus 333 ~~~~~vpi~~~~Y~aSEg~igi~~~~~~~~~~~~~~l~p~~~ffEFip~~~~~~~~~~~~~~~~~~~~l~l~Ele~G~~Y 412 (461)
+|+|++|+++++|+||||+||||++++. .+|+++|+++||||||+++.+++ +.++++++++||||+|++|
T Consensus 289 ~~~g~~~~~~~~y~ASEg~i~i~~~~~~----~~~~l~~~~~ffEFip~~~~~~~------~~~~~~~l~~~ele~G~~Y 358 (528)
T PF03321_consen 289 EYFGGVPIQSKGYGASEGFIGIPLDPED----PGYVLAPDSGFFEFIPVDEDEQN------PSEQPKTLLLHELEVGEEY 358 (528)
T ss_dssp HHHTTS-EEE-EEEETTEEEEEES-CCC------EEE-TTSSEEEEEE-STT-------------SSSEEGGG--TT-EE
T ss_pred HHcCCCceeeccccccceEEEEecCCCC----CceEeecCCeEEEEEeccCCccc------ccCCCceecHHHhcCCCeE
Confidence 9999999999999999999999999665 36999999999999999975410 1257899999999999999
Q ss_pred EEEEeccCceeccccCCEEEecccccCCCceehhhHHhhccc
Q 012549 413 EIVLTSFTGKSFISISIKIPISMNRSFSCSILYVFFFFLQTA 454 (461)
Q Consensus 413 elVvTt~~GLyRYriGDvV~v~g~~~~~cp~~~~~~~~~~~~ 454 (461)
||||||.+|||||||||||+|+|| +++||.++|.+|-.|..
T Consensus 359 elviTt~~GLyRY~iGDvVrv~gf-~~~~P~i~F~~R~~~~l 399 (528)
T PF03321_consen 359 ELVITTNSGLYRYRIGDVVRVTGF-YNQTPRIEFVGRRGQVL 399 (528)
T ss_dssp EEEEESTTS-SSEEECEEEEEEEE-ETTEEEEEEEEETTEEE
T ss_pred EEEEecccceeeeecCCEEEEeec-cCCCcEEEEeccCCcee
Confidence 999999999999999999999999 88999999999988754
No 5
>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]
Probab=99.84 E-value=8.9e-20 Score=189.42 Aligned_cols=294 Identities=17% Similarity=0.163 Sum_probs=189.2
Q ss_pred HhcHHHHHHHHHHHHHHh-cCCChHHHHhhcCccCCCCCCCcChHHhhhcCCCcccccchHHHH-HHhcCCCCCcccCcc
Q 012549 28 SENAGEVQRETLRRILEQ-NYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHADLEPYIQ-RIADGDTASLLTQEP 105 (461)
Q Consensus 28 ~~~~~~~Q~~~L~~iL~~-na~T~ygr~~~~~~~~~~f~~i~s~edFr~~VPl~tYed~~pyIe-Ri~~Ge~~~vl~~~p 105 (461)
.+...+.|++.|+.+++. ++|++|+|++|. .+++....|++.+|+++ +|+++.++++.... ++.+.. .+.
T Consensus 20 r~eL~~lq~~rl~~~~k~~yeNsPfYr~~f~-~~~v~p~~i~~l~Dl~k-lP~t~K~~lre~ypf~~~~~~------~~~ 91 (438)
T COG1541 20 RKELEKLQEKRLKSTVKYVYENSPFYRKKFK-EAGVDPDDIKTLEDLAK-LPFTTKDDLRENYPFGDFAVP------KEE 91 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH-HcCCChHHhhCHHHHHh-CCCCcHHHHHHhCCccccccc------ccc
Confidence 455788999999999986 999999999988 56888889999999995 99999999987766 555544 234
Q ss_pred cceeecccCCCCCcccccccChhcHHHHHHHHHHHHHHHHhcCCCCCCCcEEEEEecCCccccCCCceeeccccccccch
Q 012549 106 ITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRLAAAYRSRVYPIREGGRILEFIYSSKQFKTKGGLTAGTATTHYYASE 185 (461)
Q Consensus 106 i~~f~~TSGTT~G~~K~IP~T~~~~~~~~~~~~~~~~~~~~~~p~~~~gk~l~~~~~~~~~~t~~Gi~~G~~S~~~~~~~ 185 (461)
+..+..||||| |+|+.+|+|..-.......++ ..+ .......+.|..++.+ -+...+|+ +..+.
T Consensus 92 i~~ihaSSGTT-GkPt~~~~t~~D~~~wa~~~a---R~~-~~~g~~~gd~v~~~~~---yGl~tgg~------~~~~g-- 155 (438)
T COG1541 92 IVRIHASSGTT-GKPTVFGYTAKDIERWAELLA---RSL-YSAGVRKGDKVQNAYG---YGLFTGGL------GLHYG-- 155 (438)
T ss_pred eEEEEccCCCC-CCceeeecCHHHHHHHHHHHH---HHH-HHccCCCCCEEEEEee---eccccCCc------hhHHH--
Confidence 54689999999 999999999986654322211 111 1122332455554332 11112221 00000
Q ss_pred hHHhhhhhhccccCCchhhhccCChhhhHHHHHHhcccCCCCeeEEEecchHHHHHHHHHHHHHHHHHHHHHHcccCCCC
Q 012549 186 EFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECWQDICIDVREGSLSSS 265 (461)
Q Consensus 186 ~f~~~~~~~~~~~~~P~ev~~~~d~~~~~Y~~Ll~aL~~~~~l~~i~~~f~~~ll~~~~~l~~~w~~l~~dI~~Gt~~~~ 265 (461)
+ -.+++ .++..++ .+-+.-++.|.+-.+.
T Consensus 156 --------a-----------------------~rig~-------~vip~~~-----------g~~~~~~~l~~df~~t-- 184 (438)
T COG1541 156 --------A-----------------------ERIGA-------TVIPISG-----------GNTERQLELMKDFKPT-- 184 (438)
T ss_pred --------H-----------------------HhhCE-------EEEccCC-----------ccHHHHHHHHHhcCCc--
Confidence 0 00000 0111111 1112222333333333
Q ss_pred CCCcHHHHHhhcccCCCcHHHHHHHHHHhcccccCCccCcccCCCCCCceEEEEEcCC---hHHHHHHHHhHhCCCCccc
Q 012549 266 RITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVS 342 (461)
Q Consensus 266 ~i~~~~~r~~l~~~l~~~p~~A~~L~~~~~~~~~~~~~gi~~~lWP~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~~ 342 (461)
- +.+.++-...+|+++++. |..++-- .++ ..+.|+ .+.-++.|++.| +++.+
T Consensus 185 ---v------I~~tps~~l~lae~~~~~----------G~~~~~~-~lk---~~i~gaE~~see~R~~ie~~~-g~~~~- 239 (438)
T COG1541 185 ---V------IAATPSYLLYLAEEAEEE----------GIDPDKL-SLK---KGIFGAEPWSEEMRKVIENRF-GCKAF- 239 (438)
T ss_pred ---E------EEEChHHHHHHHHHHHHc----------CCChhhc-cee---EEEEecccCCHHHHHHHHHHh-CCcee-
Confidence 1 344444444556555543 3333212 345 556665 788888899989 56776
Q ss_pred CccccCcee-EEeeCCCCCCCCCceeeeeCCceEEEEeecCccccCCCCCCCCCCCCcccccCCCcCCCeEEEEEeccCc
Q 012549 343 ADYGSTESW-IGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFTG 421 (461)
Q Consensus 343 ~~Y~aSEg~-igi~~~~~~~~~~~~~~l~p~~~ffEFip~~~~~~~~~~~~~~~~~~~~l~l~Ele~G~~YelVvTt~~G 421 (461)
..||+||++ .| ..+|+.+. ++|+.-+..++|-+.++..+ . |..|+++|||+||..-
T Consensus 240 diYGltE~~g~g---~~eC~~~~-glhi~eD~~~~Ei~dP~t~e--------------~-----l~dge~GelV~T~L~~ 296 (438)
T COG1541 240 DIYGLTEGFGPG---AGECTERN-GLHIWEDHFIFEIVDPETGE--------------Q-----LPDGERGELVITTLTK 296 (438)
T ss_pred eccccccccCCc---cccccccc-CCCcchhhceeeeecCCcCc--------------c-----CCCCCeeEEEEEeccc
Confidence 999999995 44 35676654 78898889999999866422 2 6899999999999765
Q ss_pred ----eeccccCCEEEecccccCCCceehhh
Q 012549 422 ----KSFISISIKIPISMNRSFSCSILYVF 447 (461)
Q Consensus 422 ----LyRYriGDvV~v~g~~~~~cp~~~~~ 447 (461)
|.|||+||++.+. .+.|+|=+.+
T Consensus 297 ~~~PlIRYrtgDit~i~---~~~C~cGr~~ 323 (438)
T COG1541 297 EGMPLIRYRTGDITVIL---SDPCGCGRTH 323 (438)
T ss_pred cCcceEEEEcCCeeEec---ccCCCCCCcc
Confidence 9999999999999 5568876543
No 6
>TIGR03335 F390_ftsA coenzyme F390 synthetase. This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.
Probab=99.81 E-value=1.5e-19 Score=191.05 Aligned_cols=299 Identities=13% Similarity=0.079 Sum_probs=172.2
Q ss_pred HhcHHHHHHHHHHHHHHh-cCCChHHHHhhcCccCCCCCCCcChHHhhhcCCCcccccchHHHHHHhcCCCCCcc--cCc
Q 012549 28 SENAGEVQRETLRRILEQ-NYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHADLEPYIQRIADGDTASLL--TQE 104 (461)
Q Consensus 28 ~~~~~~~Q~~~L~~iL~~-na~T~ygr~~~~~~~~~~f~~i~s~edFr~~VPl~tYed~~pyIeRi~~Ge~~~vl--~~~ 104 (461)
..+.++.|.+.|+++|+. +++++|+|++|. .++++...|++.+|+++ +|+++.+|++..-... .+.=..+ ..+
T Consensus 11 ~~~l~~~q~~rl~~~l~~a~~~spfYr~~~~-~~g~~p~~i~sl~dl~~-lP~~~k~~lr~~~p~~--~~~~~~~~~~~~ 86 (445)
T TIGR03335 11 RGELDALVEERIRYTVHYAAEHSPFYKKWFQ-ENNISPSDIKSHEDLLE-LPVISGEVIRKNQPPV--TDDFMFKSADWK 86 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH-HcCCChhhCCCHHHHHH-CCCCCHHHHHhcCCcc--ccccccccCCHH
Confidence 346788999999999996 789999999976 45666778999999995 9999999997542100 0000111 123
Q ss_pred ccceeecccCCCCCcccccccChhcHHHHHHHHHHHHHHHHhcCCCCCCCcEEEEEecCCccccCCCceeeccccccccc
Q 012549 105 PITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRLAAAYRSRVYPIREGGRILEFIYSSKQFKTKGGLTAGTATTHYYAS 184 (461)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~~~~~~~~~~~~~~~~~~~~p~~~~gk~l~~~~~~~~~~t~~Gi~~G~~S~~~~~~ 184 (461)
.+..+..||||| |+||.+++|++.+........ ......++..+++.+.+++ -|.-+|. ..+
T Consensus 87 ~i~~i~~TSGTT-G~Pk~v~~T~~dl~~~~~~~~----r~~~~~G~~~gD~vl~~~~--------~~~~~g~---~~~-- 148 (445)
T TIGR03335 87 DIYTIHETSGTS-GTPKSFFLTWDDWKRYAEKYA----RSFVSQGFTAGDRMVICAS--------YGMNVGA---NTM-- 148 (445)
T ss_pred HeEEEEeCCCCC-CCcceeeecHHHHHHHHHHHH----HHHHHcCCCCCCeEEEEec--------CCcchhH---HHH--
Confidence 344677899999 999999999886654322111 1111223442444443211 0110000 000
Q ss_pred hhHHhhhhhhccccCCchhhhccCChhhhHHHHHHhcccCCCCeeEEEecchHHHHHHHHHHHHHHHHHHHHHHcccCCC
Q 012549 185 EEFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEECWQDICIDVREGSLSS 264 (461)
Q Consensus 185 ~~f~~~~~~~~~~~~~P~ev~~~~d~~~~~Y~~Ll~aL~~~~~l~~i~~~f~~~ll~~~~~l~~~w~~l~~dI~~Gt~~~ 264 (461)
.+..+.++ ...+.... . +..++.|++..+.
T Consensus 149 -----------------------------~~~~~~~G------a~vi~~~~---~-----------~~~~~~i~~~~~t- 178 (445)
T TIGR03335 149 -----------------------------TLAAREVG------MSIIPEGK---C-----------TFPIRIIESYRPT- 178 (445)
T ss_pred -----------------------------HHHHHHcC------CEEEcCCc---h-----------hHHHHHHHHhCCC-
Confidence 00001111 11111000 0 0112334433333
Q ss_pred CCCCcHHHHHhhcccCCCcHHHHHHHHHHhcccccCCccCcccCCCCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcc
Q 012549 265 SRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLV 341 (461)
Q Consensus 265 ~~i~~~~~r~~l~~~l~~~p~~A~~L~~~~~~~~~~~~~gi~~~lWP~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~ 341 (461)
. +.+.++....+|+++++. |+-+. .++++ .++.|+ ....++.+++.+ +++++
T Consensus 179 ----~------l~~~ps~ll~La~~~~~~----------g~~~~-~~~lr---~ii~gGE~l~~~~r~~ie~~~-g~~v~ 233 (445)
T TIGR03335 179 ----G------IVASVFKLLRLARRMKAE----------GIDPA-ESSIR---RLVVGGESFADESRNYVEELW-GCEVY 233 (445)
T ss_pred ----E------EEECHHHHHHHHHHHHHc----------CCCcc-cCcce---EEEEcCCCCCHHHHHHHHHHh-CCcEE
Confidence 1 223332223344433221 22222 24677 445444 445567788888 57888
Q ss_pred cCccccCceeEEeeCCCCCCCCCceeeeeCCceEEEEeecCccccCCCCCCCCCCCCcccccCCCcCCCeEEEEEeccC-
Q 012549 342 SADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFT- 420 (461)
Q Consensus 342 ~~~Y~aSEg~igi~~~~~~~~~~~~~~l~p~~~ffEFip~~~~~~~~~~~~~~~~~~~~l~l~Ele~G~~YelVvTt~~- 420 (461)
..||+||+.++ .+|+.. .+|++..+..++|.++++. ..+ |+.|+..|||||+..
T Consensus 234 -~~YG~TE~~~~----~~c~~~-~g~h~~~d~~~vEIvDp~~--------------~~~-----vp~Ge~GELvvT~L~~ 288 (445)
T TIGR03335 234 -NTYGSTEGTMC----GECQAV-AGLHVPEDLVHLDVYDPRH--------------QRF-----LPDGECGRIVLTTLLK 288 (445)
T ss_pred -ecCChhhhhhe----EEecCC-CCccccCCceEEEEEcCCC--------------CCC-----CcCCCceEEEEEecCC
Confidence 89999998544 244322 3688888888999997441 122 578999999999983
Q ss_pred -------ceeccccCCEEEecccccCCCceehhhHHh
Q 012549 421 -------GKSFISISIKIPISMNRSFSCSILYVFFFF 450 (461)
Q Consensus 421 -------GLyRYriGDvV~v~g~~~~~cp~~~~~~~~ 450 (461)
=|.|||+||++++.. .++|||=+.+-++
T Consensus 289 ~~~r~~~PliRYrtgD~~~~~~--~~~C~CGr~~~r~ 323 (445)
T TIGR03335 289 PGERCGSLLINYDTEDTTVVIS--RDRCPCGRTHMRI 323 (445)
T ss_pred CCccCCceEEEeecCceEEEec--CCCCCCCCCccee
Confidence 299999999999741 3688875544443
No 7
>TIGR02304 aden_form_hyp probable adenylate-forming enzyme. Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.
Probab=99.77 E-value=5.9e-18 Score=178.05 Aligned_cols=269 Identities=16% Similarity=0.184 Sum_probs=173.2
Q ss_pred hcHHHHHHHHHHHHHHh-cCCChHHHHhhcCccCCCCCCCcChHHhhhcCCCcccccchHHHHHHhcCC-CCC-c-----
Q 012549 29 ENAGEVQRETLRRILEQ-NYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHADLEPYIQRIADGD-TAS-L----- 100 (461)
Q Consensus 29 ~~~~~~Q~~~L~~iL~~-na~T~ygr~~~~~~~~~~f~~i~s~edFr~~VPl~tYed~~pyIeRi~~Ge-~~~-v----- 100 (461)
+..++.|++.|+++|+. .++++|+|++ . ++ +++ ++|++|++++....+++.... ..+ .
T Consensus 22 ~~l~~~Q~~rL~~ll~~a~~~sPfYr~~-------~--~~----~l~-~lPvl~K~~~~~~fd~~~t~~l~~~~~~~~a~ 87 (430)
T TIGR02304 22 EALENWQAKQLEKFLQFVLSHSPWFQRY-------H--TI----PFN-QWPMMDKALMMEHFDELNTAGLKKDEALDCAM 87 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhhhc-------c--CC----CHH-HCCCcCHHHHHHHHHHhhccCCChhhhhHHhh
Confidence 45788999999999997 6999999998 3 22 466 599999999999999987321 011 0
Q ss_pred -------cc--CcccceeecccCCCCCcccccccChhcHHHHHHHHHHHHHHHHhcCC--CCCCCcEEEEEecCCccccC
Q 012549 101 -------LT--QEPITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRLAAAYRSRVYP--IREGGRILEFIYSSKQFKTK 169 (461)
Q Consensus 101 -------l~--~~pi~~f~~TSGTT~G~~K~IP~T~~~~~~~~~~~~~~~~~~~~~~p--~~~~gk~l~~~~~~~~~~t~ 169 (461)
+. -+.+ ....||||| |++-.|.++++..... .+ ..+.+..| +..++|...+.-+..
T Consensus 88 ~~e~~r~f~~~~~~~-~v~~TSGSS-G~p~~f~~~~~~~~~~-~a-----~~~~~~~~~g~~~g~r~a~~~~~~~----- 154 (430)
T TIGR02304 88 RSEKTRDFKPCVGNI-SVGLSSGTS-GRRGLFVVSPEEQQMW-AG-----GILAKVLPDGLFAKHRIAFFLRADN----- 154 (430)
T ss_pred hhhhhcccccccCcE-EEEECCCCC-CCceEEEECHHHHHHH-HH-----HHHhhhCccccccCCcEEEEEccCh-----
Confidence 00 1334 567899999 9999999999855322 11 11222333 332456665521111
Q ss_pred CCceeeccccccccchhHHhhhhhhccccCCchhhhccCChhhhHHHHHHhcccCCCCeeEEEecchHHHHHHHHHHHHH
Q 012549 170 GGLTAGTATTHYYASEEFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEEC 249 (461)
Q Consensus 170 ~Gi~~G~~S~~~~~~~~f~~~~~~~~~~~~~P~ev~~~~d~~~~~Y~~Ll~aL~~~~~l~~i~~~f~~~ll~~~~~l~~~ 249 (461)
..+. .+... + +. +..+++. +.
T Consensus 155 ----------~ly~---------~~~~~--------------------~------------~~-------~~~~~l~-~~ 175 (430)
T TIGR02304 155 ----------NLYQ---------SVNNR--------------------W------------IS-------LDFFDLL-AP 175 (430)
T ss_pred ----------hHHH---------HHHhc--------------------c------------ce-------eeecCCC-cC
Confidence 0000 00000 0 00 1122333 56
Q ss_pred HHHHHHHHHcccCCCCCCCcHHHHHhhcccCCCcHHHHHHHHHHhcccccCCccCcccCCCCCCceEEEEEcCC---hHH
Q 012549 250 WQDICIDVREGSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGS---MQH 326 (461)
Q Consensus 250 w~~l~~dI~~Gt~~~~~i~~~~~r~~l~~~l~~~p~~A~~L~~~~~~~~~~~~~gi~~~lWP~L~~v~~~~~G~---~~~ 326 (461)
+++.++.|.+-.+. . |.++++....+|+++++. |+ ++ +++ .+.+++ ...
T Consensus 176 ~~~~l~~L~~~~P~-----~------L~g~pS~l~~LA~~~~~~----------~l--~~--~~k---~ii~~~E~l~~~ 227 (430)
T TIGR02304 176 FQAHIKRLNQRKPS-----I------IVAPPSVLRALALEVMEG----------EL--TI--KPK---KVISVAEVLEPQ 227 (430)
T ss_pred HHHHHHHHHHhCCC-----E------EEEcHHHHHHHHHHHHhc----------CC--CC--Cce---EEEEccCCCCHH
Confidence 77888888877777 3 666666666677665441 23 22 455 333333 666
Q ss_pred HHHHHHhHhCCCCcccCccccCceeEEeeCCCCCCCCCceeeeeCCceEEEEeecCccccCCCCCCCCCCCCcccccCCC
Q 012549 327 YLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVPLSQV 406 (461)
Q Consensus 327 y~~~l~~~~~~vpi~~~~Y~aSEg~igi~~~~~~~~~~~~~~l~p~~~ffEFip~~~~~~~~~~~~~~~~~~~~l~l~El 406 (461)
.++.|++.| ++++. ..||||||.+| .+|+.| +||+.++..|+|+..+|+.+
T Consensus 228 ~r~~Ie~~f-g~~V~-~~YG~tEg~la----~eC~~g--~lHl~ed~~~vE~~ivD~~~--------------------- 278 (430)
T TIGR02304 228 DRELIRNVF-KNTVH-QIYQATEGFLA----STCRCG--TLHLNEDLVHIEKQYLDEHK--------------------- 278 (430)
T ss_pred HHHHHHHHh-CCCee-EccCCchhheE----EecCCC--CEEEccccEEEEeeEECCCC---------------------
Confidence 778899999 57988 79999999887 667553 59999999999953333211
Q ss_pred cCCCeEEEEEeccCc----eeccccCCEEEecccccCCCceehhh
Q 012549 407 KLGQEYEIVLTSFTG----KSFISISIKIPISMNRSFSCSILYVF 447 (461)
Q Consensus 407 e~G~~YelVvTt~~G----LyRYriGDvV~v~g~~~~~cp~~~~~ 447 (461)
....|||+... |.||++||++++. .++|||=..+
T Consensus 279 ----~~~~ViT~L~n~~~PlIRYrtGD~~~~~---~~~C~CGr~~ 316 (430)
T TIGR02304 279 ----RFVPIITDFTRTTQPIVRYRLNDILVES---EQPCSCGSAT 316 (430)
T ss_pred ----ceEEEEecCCCccceEEeeeCCCEEEeC---CCCCCCCCcc
Confidence 13359999886 9999999999987 6799976543
No 8
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase. Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.
Probab=99.71 E-value=1.3e-16 Score=166.75 Aligned_cols=94 Identities=20% Similarity=0.299 Sum_probs=73.3
Q ss_pred hcHHHHHHHHHHHHHHh-cCCChHHHHhhcCccCCCCCCCcChHHhhhcCCCcccccchHHHHHHhcCCCCCcc--cCcc
Q 012549 29 ENAGEVQRETLRRILEQ-NYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHADLEPYIQRIADGDTASLL--TQEP 105 (461)
Q Consensus 29 ~~~~~~Q~~~L~~iL~~-na~T~ygr~~~~~~~~~~f~~i~s~edFr~~VPl~tYed~~pyIeRi~~Ge~~~vl--~~~p 105 (461)
++.++.|.+.|+++|+. .++++|+|++|. .++++.+.|++.+||++ +|++++++++.... ..++ ..+.
T Consensus 6 ~~l~~~q~~~l~~~~~~a~~~~pfYr~~~~-~~~i~~~~i~~~~dl~~-lP~~~K~~l~~~~~-------~~~~~~~~~~ 76 (422)
T TIGR02155 6 DELRALQTQRLKWTVKHAYENVPHYRKAFD-AAGVHPDDLQSLSDLAK-FPFTQKHDLRDNYP-------FGLFAVPREQ 76 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHH-HcCCChhhCCCHHHHHH-CCCCcHHHHhhcCC-------CcccCCChHH
Confidence 45788999999999997 689999999976 44566678999999995 99999999975432 1122 2233
Q ss_pred cceeecccCCCCCcccccccChhcHHH
Q 012549 106 ITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 106 i~~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
+.++..||||| |+||.+++|+..+..
T Consensus 77 ~~~~~~TSGTT-G~Pk~v~~t~~~~~~ 102 (422)
T TIGR02155 77 VVRIHASSGTT-GKPTVVGYTQNDIDT 102 (422)
T ss_pred cEEEEECCCCC-CCCeEeccCHHHHHH
Confidence 44667899999 999999999986643
No 9
>PRK09274 peptide synthase; Provisional
Probab=97.91 E-value=0.00038 Score=75.00 Aligned_cols=38 Identities=18% Similarity=0.440 Sum_probs=28.1
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhC-CCCcccCccccCcee
Q 012549 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAG-DLPLVSADYGSTESW 351 (461)
Q Consensus 310 WP~L~~v~~~~~G~---~~~y~~~l~~~~~-~vpi~~~~Y~aSEg~ 351 (461)
.|+++ .+.+|+ ....++++++.++ +++++ ..||+||+.
T Consensus 287 ~~~lr---~~~~gG~~~~~~~~~~~~~~~~~~~~~~-~~YG~TE~~ 328 (552)
T PRK09274 287 LPSLR---RVISAGAPVPIAVIERFRAMLPPDAEIL-TPYGATEAL 328 (552)
T ss_pred Cchhh---EEEecCCcCCHHHHHHHHHHcCCCceEE-ccccccccc
Confidence 46777 555555 5566777888886 48888 999999984
No 10
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated
Probab=97.80 E-value=0.00065 Score=73.52 Aligned_cols=38 Identities=18% Similarity=0.306 Sum_probs=28.0
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcee
Q 012549 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESW 351 (461)
Q Consensus 310 WP~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~~~~Y~aSEg~ 351 (461)
.++|+ .+.+|+ .....+++++.++++++. ..||+||+.
T Consensus 298 ~~~lr---~i~~gG~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~ 338 (539)
T PRK06334 298 LPSLR---FVVIGGDAFKDSLYQEALKTFPHIQLR-QGYGTTECS 338 (539)
T ss_pred ccccc---EEEECCccCCHHHHHHHHHHCCCCeEE-ecccccccC
Confidence 35777 555555 445567777788888888 899999983
No 11
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]. This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
Probab=97.73 E-value=0.00074 Score=69.62 Aligned_cols=101 Identities=24% Similarity=0.280 Sum_probs=64.0
Q ss_pred CCCCceEEEEEcCC--hHHHHHHHHhHhCCCCcccCccccCce-eEEeeC--CCC-CCCCCceeeeeCCceEEEEeecCc
Q 012549 310 WPNAKYVYSIMTGS--MQHYLKKLRHYAGDLPLVSADYGSTES-WIGVNV--DPS-LPPEDVTFAVIPTFSYFEFIPIHR 383 (461)
Q Consensus 310 WP~L~~v~~~~~G~--~~~y~~~l~~~~~~vpi~~~~Y~aSEg-~igi~~--~~~-~~~~~~~~~l~p~~~ffEFip~~~ 383 (461)
+++++.|.+ +|+ .....+++++.++.+++. ..||+||+ .++... ... ..++..+. +.| ..-++.+.++.
T Consensus 276 l~~lr~v~~--~G~~l~~~~~~~~~~~~~~~~i~-~~YG~tE~~~~~~~~~~~~~~~~~~~~G~-~~~-~~~~~ivd~~~ 350 (417)
T PF00501_consen 276 LSSLRTVIS--GGEPLPPDLLRRLRKAFGNAPII-NLYGSTETGSIATIRPPEDDIEKPGSVGK-PLP-GVEVKIVDPNT 350 (417)
T ss_dssp GTT-SEEEE--ESST-CHHHHHHHHHHHTTSEEE-EEEEEGGGSSEEEEEETTTHHSSTTSEBE-EST-TEEEEEECTTT
T ss_pred ccccccccc--ccccCChhhccccccccccccce-ecccccccceeeecccccccccccccccc-ccc-ccccccccccc
Confidence 456884443 333 666777888888776787 99999999 455522 211 12222332 344 55566775331
Q ss_pred cccCCCCCCCCCCCCcccccCCCcCCCeEEEEEecc---Cceec--------------cccCCEEEec
Q 012549 384 RKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSF---TGKSF--------------ISISIKIPIS 434 (461)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~l~Ele~G~~YelVvTt~---~GLyR--------------YriGDvV~v~ 434 (461)
.+. |+.|+.+||+|+.. .|.|+ ||+||++++.
T Consensus 351 --------------~~~-----~~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d 399 (417)
T PF00501_consen 351 --------------GEP-----LPPGEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDLGRLD 399 (417)
T ss_dssp --------------SSB-----ESTTSEEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEEEEEEEE
T ss_pred --------------ccc-----ccccccccccccCCccceeeeccccccccccccccceecceEEEEC
Confidence 233 47999999999953 34443 9999999997
No 12
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.72 E-value=0.0013 Score=71.39 Aligned_cols=98 Identities=15% Similarity=0.257 Sum_probs=56.7
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcee--EEeeCCCCCCCCCceeeeeCCceEEEEeecCcc
Q 012549 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESW--IGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRR 384 (461)
Q Consensus 310 WP~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~~~~Y~aSEg~--igi~~~~~~~~~~~~~~l~p~~~ffEFip~~~~ 384 (461)
.+.++ +++.|+ ...-++++++.+ +++++ ..||+||+. +..+......++.++. ..|+ ...+.++++
T Consensus 325 ~~~lr---~v~~gG~~~~~~~~~~~~~~~-~~~v~-~~YG~tE~~~~~~~~~~~~~~~~~vG~-~~~~-~~v~i~d~~-- 395 (562)
T PRK05677 325 FSALK---LTLSGGMALQLATAERWKEVT-GCAIC-EGYGMTETSPVVSVNPSQAIQVGTIGI-PVPS-TLCKVIDDD-- 395 (562)
T ss_pred hhhce---EEEEcCccCCHHHHHHHHHHc-CCCee-ccCCccccCcceeecCccCCCCCccCc-cCCC-CEEEEECCC--
Confidence 35677 555555 444556666666 67888 999999983 3322211111222332 2233 344444321
Q ss_pred ccCCCCCCCCCCCCcccccCCCcCCCeEEEEEecc---Ccee--------------ccccCCEEEec
Q 012549 385 KQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSF---TGKS--------------FISISIKIPIS 434 (461)
Q Consensus 385 ~~~~~~~~~~~~~~~~l~l~Ele~G~~YelVvTt~---~GLy--------------RYriGDvV~v~ 434 (461)
+ . +|..|+..||+|+.. .|.| .|++||+++..
T Consensus 396 ~-------------~-----~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGDlg~~~ 444 (562)
T PRK05677 396 G-------------N-----ELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQ 444 (562)
T ss_pred C-------------C-----CCCCCCCeEEEEecCccchhhcCCchhhhhccCCCCcccccceEEEC
Confidence 1 2 367888999999753 2222 28999999887
No 13
>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional
Probab=97.71 E-value=0.00045 Score=73.01 Aligned_cols=39 Identities=26% Similarity=0.315 Sum_probs=27.3
Q ss_pred CCCCceEEEEEcCC--hHHHHHHHHhHhCCCCcccCccccCcee
Q 012549 310 WPNAKYVYSIMTGS--MQHYLKKLRHYAGDLPLVSADYGSTESW 351 (461)
Q Consensus 310 WP~L~~v~~~~~G~--~~~y~~~l~~~~~~vpi~~~~Y~aSEg~ 351 (461)
.|+++.| +.+|. ...-.+.+++.+++++++ ..||+||..
T Consensus 259 ~~~l~~i--~~~G~~l~~~~~~~~~~~~~~~~~~-~~yG~tE~~ 299 (503)
T PRK04813 259 LPNLTHF--LFCGEELPHKTAKKLLERFPSATIY-NTYGPTEAT 299 (503)
T ss_pred CCCceEE--EEecCcCCHHHHHHHHHHCCCceEE-eCcccchhe
Confidence 4677733 22333 556667788888888888 999999973
No 14
>PRK07529 AMP-binding domain protein; Validated
Probab=97.65 E-value=0.0013 Score=72.64 Aligned_cols=103 Identities=13% Similarity=0.169 Sum_probs=58.5
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCceeEEeeCCCCC---CCCCceeeeeCCceEEEEeecCc
Q 012549 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSL---PPEDVTFAVIPTFSYFEFIPIHR 383 (461)
Q Consensus 310 WP~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~~~~Y~aSEg~igi~~~~~~---~~~~~~~~l~p~~~ffEFip~~~ 383 (461)
++.|+ ++.+|+ .....+++++.+ ++++. .+||+||+.......+.. ..+.++. .+|. .-+..+..++
T Consensus 332 ~~slr---~v~~gg~~l~~~l~~~~~~~~-g~~l~-~~YG~TE~~~~~~~~~~~~~~~~~svG~-~~p~-~~v~i~~~d~ 404 (632)
T PRK07529 332 ISSLR---YALCGAAPLPVEVFRRFEAAT-GVRIV-EGYGLTEATCVSSVNPPDGERRIGSVGL-RLPY-QRVRVVILDD 404 (632)
T ss_pred ccceE---EEEEcCCCCCHHHHHHHHHHh-CCcEe-eeecccccCcccccCCccccccCCCccc-ccCC-ceEEEEEcCC
Confidence 45677 555555 445556677767 67888 999999984322221111 1222333 2233 2344544442
Q ss_pred cccCCCCCCCCCCCCcccccCCCcCCCeEEEEEecc---Ccee-------------ccccCCEEEec
Q 012549 384 RKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSF---TGKS-------------FISISIKIPIS 434 (461)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~l~Ele~G~~YelVvTt~---~GLy-------------RYriGDvV~v~ 434 (461)
.+ . ...++.+|+..||+|+.. .|.+ -|++||+.++.
T Consensus 405 ~g-------------~--~~~~~~~g~~Gel~v~gp~v~~GY~~~~~~~~~~~~~gw~~TGDlg~~d 456 (632)
T PRK07529 405 AG-------------R--YLRDCAVDEVGVLCIAGPNVFSGYLEAAHNKGLWLEDGWLNTGDLGRID 456 (632)
T ss_pred CC-------------c--ccccCCCCCceEEEEECCCccccccCCccccccccCCCceEcCcEEEEc
Confidence 11 1 123467899999999763 2211 38999999986
No 15
>PRK06060 acyl-CoA synthetase; Validated
Probab=97.62 E-value=0.0014 Score=73.22 Aligned_cols=99 Identities=14% Similarity=0.218 Sum_probs=57.6
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcee-EEeeC-CCCCCCCCceeeeeCCceEEEEeecCcc
Q 012549 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESW-IGVNV-DPSLPPEDVTFAVIPTFSYFEFIPIHRR 384 (461)
Q Consensus 310 WP~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~~~~Y~aSEg~-igi~~-~~~~~~~~~~~~l~p~~~ffEFip~~~~ 384 (461)
+++++ ++++|+ ....++++.+.+++++++ ..||.||+. +.+.. .....++..+. ..|+. -++.+..+
T Consensus 259 ~~slr---~i~~gGe~l~~~~~~~~~~~~~~~~~~-~~YG~tE~~~~~~~~~~~~~~~~~iG~-p~~~~-~v~i~d~~-- 330 (705)
T PRK06060 259 FRSLR---CVVSAGEALELGLAERLMEFFGGIPIL-DGIGSTEVGQTFVSNRVDEWRLGTLGR-VLPPY-EIRVVAPD-- 330 (705)
T ss_pred cccee---EEEEecCcCCHHHHHHHHHHcCCCceE-eeeeccccCceEEeccCCCCCcCcccc-cCCCc-EEEEECCC--
Confidence 35677 556555 455566777888888988 999999983 22211 11111111222 23332 33333321
Q ss_pred ccCCCCCCCCCCCCcccccCCCcCCCeEEEEEecc---Ccee-----------ccccCCEEEec
Q 012549 385 KQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSF---TGKS-----------FISISIKIPIS 434 (461)
Q Consensus 385 ~~~~~~~~~~~~~~~~l~l~Ele~G~~YelVvTt~---~GLy-----------RYriGDvV~v~ 434 (461)
.+ .+..|+..||+|+.. .|+| -|++||+++..
T Consensus 331 -------------g~-----~~~~g~~GEl~i~g~~v~~GY~~~~~~~~~~~~~~~TGDl~~~~ 376 (705)
T PRK06060 331 -------------GT-----TAGPGVEGDLWVRGPAIAKGYWNRPDSPVANEGWLDTRDRVCID 376 (705)
T ss_pred -------------CC-----CCCCCCceEEEEccchhhhhhhCCCcccccCCCcEECCeeEEEC
Confidence 12 256899999999752 2333 28999999986
No 16
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed
Probab=97.60 E-value=0.00081 Score=72.55 Aligned_cols=98 Identities=10% Similarity=0.091 Sum_probs=56.3
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcee-EEeeCCCC--CC-CCCceeeeeCCceEEEEeecC
Q 012549 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESW-IGVNVDPS--LP-PEDVTFAVIPTFSYFEFIPIH 382 (461)
Q Consensus 310 WP~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~~~~Y~aSEg~-igi~~~~~--~~-~~~~~~~l~p~~~ffEFip~~ 382 (461)
.|+++ ++++|+ ....++.+++.+ +++++ ..||+||+. ++...... .. ....+. ..|+ .-++.+..+
T Consensus 311 ~~~l~---~~~~~G~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~~G~-~~~~-~~v~i~d~~ 383 (547)
T PRK13295 311 VSSLR---TFLCAGAPIPGALVERARAAL-GAKIV-SAWGMTENGAVTLTKLDDPDERASTTDGC-PLPG-VEVRVVDAD 383 (547)
T ss_pred cccce---EEEEecCCCCHHHHHHHHHHh-CCCeE-EeccCCCCCCeeeccCCCcchhccCcccc-ccCC-cEEEEECCC
Confidence 45677 555554 556667777777 68988 899999983 33221110 00 011122 2222 223333211
Q ss_pred ccccCCCCCCCCCCCCcccccCCCcCCCeEEEEEecc---Ccee------------ccccCCEEEec
Q 012549 383 RRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSF---TGKS------------FISISIKIPIS 434 (461)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~l~l~Ele~G~~YelVvTt~---~GLy------------RYriGDvV~v~ 434 (461)
..++..|+..||+|+.. .|.| .|++||++++.
T Consensus 384 --------------------~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~g~~~TGD~~~~~ 430 (547)
T PRK13295 384 --------------------GAPLPAGQIGRLQVRGCSNFGGYLKRPQLNGTDADGWFDTGDLARID 430 (547)
T ss_pred --------------------CCCCCCCCCCeEEEEcCcccccccCCccccccCCCCCeecceEEEEc
Confidence 12357888999999764 3333 29999999997
No 17
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.59 E-value=0.0016 Score=68.86 Aligned_cols=29 Identities=24% Similarity=0.286 Sum_probs=23.5
Q ss_pred CcccceeecccCCCCCcccccccChhcHHH
Q 012549 103 QEPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 103 ~~pi~~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
.+-+.+...||||| |.||.++.|...+..
T Consensus 166 ~~~~~~i~~TSGtT-G~PK~v~~t~~~l~~ 194 (521)
T PRK06187 166 ENDAAAMLYTSGTT-GHPKGVVLSHRNLFL 194 (521)
T ss_pred ccceEEEEECCCCC-CCCceEEeehHHHHH
Confidence 33455788899999 999999999987654
No 18
>TIGR01733 AA-adenyl-dom amino acid adenylation domain. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.
Probab=97.58 E-value=0.0055 Score=62.73 Aligned_cols=39 Identities=23% Similarity=0.354 Sum_probs=27.6
Q ss_pred CCCCceEEEEEcCC--hHHHHHHHHhHhCCCCcccCccccCcee
Q 012549 310 WPNAKYVYSIMTGS--MQHYLKKLRHYAGDLPLVSADYGSTESW 351 (461)
Q Consensus 310 WP~L~~v~~~~~G~--~~~y~~~l~~~~~~vpi~~~~Y~aSEg~ 351 (461)
.++++.| +.+|+ ....++.+++.++++++. ..||+||+.
T Consensus 233 ~~~l~~v--~~~g~~~~~~~~~~~~~~~~~~~i~-~~YG~tE~g 273 (408)
T TIGR01733 233 LASLRLV--ILGGEALTPALVDRWRARGPGARLI-NLYGPTETT 273 (408)
T ss_pred ccCceEE--EEeCccCCHHHHHHHHHhCCCcEEE-ecccCCceE
Confidence 4567733 22333 566677788888778888 899999993
No 19
>PRK07514 malonyl-CoA synthase; Validated
Probab=97.54 E-value=0.0008 Score=71.28 Aligned_cols=100 Identities=16% Similarity=0.179 Sum_probs=57.1
Q ss_pred CCCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCceeE-EeeC-CCCCCCCCceeeeeCCceEEEEeecCc
Q 012549 309 LWPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWI-GVNV-DPSLPPEDVTFAVIPTFSYFEFIPIHR 383 (461)
Q Consensus 309 lWP~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~~~~Y~aSEg~i-gi~~-~~~~~~~~~~~~l~p~~~ffEFip~~~ 383 (461)
..++++ ++.+|+ .....+.+++.+ +.+++ ..||+||+.. ..+. ......+..+. ..|+ ..+..++.+.
T Consensus 267 ~~~~lr---~~~~gg~~~~~~~~~~~~~~~-~~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~G~-~~~~-~~v~i~d~~~ 339 (504)
T PRK07514 267 AAAHMR---LFISGSAPLLAETHREFQERT-GHAIL-ERYGMTETNMNTSNPYDGERRAGTVGF-PLPG-VSLRVTDPET 339 (504)
T ss_pred ccccee---eEEecCCCCCHHHHHHHHHHh-CCcce-eecccccccccccCCccccccCccccc-CCCC-cEEEEEECCC
Confidence 456777 666665 333445566666 46777 8999999843 2221 11111111121 2222 3344444221
Q ss_pred cccCCCCCCCCCCCCcccccCCCcCCCeEEEEEec---cCceec--------------cccCCEEEec
Q 012549 384 RKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTS---FTGKSF--------------ISISIKIPIS 434 (461)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~l~Ele~G~~YelVvTt---~~GLyR--------------YriGDvV~v~ 434 (461)
.. .+..|+..||+|++ ..|+|+ |++||+++..
T Consensus 340 --------------~~-----~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~ 388 (504)
T PRK07514 340 --------------GA-----ELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKID 388 (504)
T ss_pred --------------CC-----CCCCCCceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEEc
Confidence 12 26788899999987 445553 8999999886
No 20
>TIGR03205 pimA dicarboxylate--CoA ligase PimA. PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.
Probab=97.53 E-value=0.0019 Score=69.46 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=22.7
Q ss_pred CcccceeecccCCCCCcccccccChhcHH
Q 012549 103 QEPITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (461)
Q Consensus 103 ~~pi~~f~~TSGTT~G~~K~IP~T~~~~~ 131 (461)
++-+.+...||||| |+||-+..|++.+.
T Consensus 191 ~~~~~~i~~TSGTT-G~PK~v~~s~~~l~ 218 (541)
T TIGR03205 191 PDDVALLQYTGGTT-GLPKGAMLTHGNLT 218 (541)
T ss_pred ccCeEEEEECCCCC-CCCcEEEEeHHHHH
Confidence 33455778899999 99999999998664
No 21
>PRK07788 acyl-CoA synthetase; Validated
Probab=97.52 E-value=0.0019 Score=69.73 Aligned_cols=98 Identities=16% Similarity=0.008 Sum_probs=55.1
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcee-EEeeC--CCCCCCCCceeeeeCCceEEEEeecCc
Q 012549 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESW-IGVNV--DPSLPPEDVTFAVIPTFSYFEFIPIHR 383 (461)
Q Consensus 310 WP~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~~~~Y~aSEg~-igi~~--~~~~~~~~~~~~l~p~~~ffEFip~~~ 383 (461)
.++|+ .++.|+ ...-++++++.++ .++. ..||+||+. +++.. +....++..+. ..|+ .-++.++.+
T Consensus 322 ~~~lr---~i~~gG~~l~~~~~~~~~~~~~-~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~vG~-~~~~-~~~~i~d~~- 393 (549)
T PRK07788 322 TSSLK---IIFVSGSALSPELATRALEAFG-PVLY-NLYGSTEVAFATIATPEDLAEAPGTVGR-PPKG-VTVKILDEN- 393 (549)
T ss_pred CCcee---EEEEeCCCCCHHHHHHHHHHhC-ccce-eccCcchhchhhccChhhhhhcCCCccc-CCCC-cEEEEECCC-
Confidence 35677 555555 4555666777774 5777 899999973 22211 00111111222 2233 223444321
Q ss_pred cccCCCCCCCCCCCCcccccCCCcCCCeEEEEEeccCceec-------------cccCCEEEec
Q 012549 384 RKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFTGKSF-------------ISISIKIPIS 434 (461)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~l~Ele~G~~YelVvTt~~GLyR-------------YriGDvV~v~ 434 (461)
.+ ++..|+..||+|++..-+-+ |++||++++.
T Consensus 394 --------------~~-----~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~g~~~TGDl~~~~ 438 (549)
T PRK07788 394 --------------GN-----EVPRGVVGRIFVGNGFPFEGYTDGRDKQIIDGLLSSGDVGYFD 438 (549)
T ss_pred --------------cC-----CCCCCCeEEEEEeCCCccccccCCCcccccCCceecCceEEEc
Confidence 12 25779999999987544433 5899998875
No 22
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=97.50 E-value=0.0018 Score=77.10 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=23.3
Q ss_pred CcccceeecccCCCCCcccccccChhcHHH
Q 012549 103 QEPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 103 ~~pi~~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
++.+.+...||||| |+||-+.+|++.+..
T Consensus 597 ~~~~a~i~~TSGST-G~PKgV~~~h~~l~~ 625 (1296)
T PRK10252 597 PHHTAYIIFTSGST-GRPKGVMVGQTAIVN 625 (1296)
T ss_pred CCCeEEEEECCCCC-CCCCEEEeccHHHHH
Confidence 33455888999999 999999999886643
No 23
>PLN02574 4-coumarate--CoA ligase-like
Probab=97.50 E-value=0.0025 Score=69.09 Aligned_cols=100 Identities=13% Similarity=0.180 Sum_probs=56.7
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcee-EEee-CCCCC--CCCCceeeeeCCceEEEEeecC
Q 012549 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESW-IGVN-VDPSL--PPEDVTFAVIPTFSYFEFIPIH 382 (461)
Q Consensus 310 WP~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~~~~Y~aSEg~-igi~-~~~~~--~~~~~~~~l~p~~~ffEFip~~ 382 (461)
++.++ ++..|+ ...-++++++.++++++. .+||+||+. +... ..... ..+..+. ..|+ .-.+-++.+
T Consensus 318 ~~~lr---~~~~gg~~l~~~~~~~~~~~~~~~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~~vG~-~~~~-~~v~i~d~~ 391 (560)
T PLN02574 318 LKSLK---QVSCGAAPLSGKFIQDFVQTLPHVDFI-QGYGMTESTAVGTRGFNTEKLSKYSSVGL-LAPN-MQAKVVDWS 391 (560)
T ss_pred cccce---EEEEecccCCHHHHHHHHHHCCCCcEE-ecccccccCceeecCCCccccCCCCceee-eCCC-cEEEEEeCC
Confidence 45666 444444 445566677777788888 899999984 3221 11111 1122222 2222 334444322
Q ss_pred ccccCCCCCCCCCCCCcccccCCCcCCCeEEEEEeccC---cee--------------ccccCCEEEec
Q 012549 383 RRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFT---GKS--------------FISISIKIPIS 434 (461)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~l~l~Ele~G~~YelVvTt~~---GLy--------------RYriGDvV~v~ 434 (461)
+ .. +|..|+..||+|+... |.| .|++||+.++.
T Consensus 392 ~--------------g~-----~~~~g~~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDlg~~~ 441 (560)
T PLN02574 392 T--------------GC-----LLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFD 441 (560)
T ss_pred C--------------Cc-----CCCCCCCeEEEEECcchhhhhcCChhHhhhhccCCCCcccceEEEEE
Confidence 1 12 3678999999998632 222 28999999886
No 24
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional
Probab=97.46 E-value=0.0053 Score=66.35 Aligned_cols=96 Identities=18% Similarity=0.179 Sum_probs=55.8
Q ss_pred CCCceEEEEEcCC-hHHHHHHHHhHhCCCCcccCccccCcee-E-EeeCCCCCCCCCceeeeeCCceEEEEeecCccccC
Q 012549 311 PNAKYVYSIMTGS-MQHYLKKLRHYAGDLPLVSADYGSTESW-I-GVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQD 387 (461)
Q Consensus 311 P~L~~v~~~~~G~-~~~y~~~l~~~~~~vpi~~~~Y~aSEg~-i-gi~~~~~~~~~~~~~~l~p~~~ffEFip~~~~~~~ 387 (461)
++++ .+.+|+ ....++.+++.+ +++++ ..||+||+. + +.+. +...++..+. .. ...-++.+..+
T Consensus 294 ~~l~---~~~~g~~~~~~~~~~~~~~-~~~v~-~~YG~tE~~~~~~~~~-~~~~~~~vG~-~~-~~~~~~i~d~~----- 360 (542)
T PRK06155 294 HRVR---VALGPGVPAALHAAFRERF-GVDLL-DGYGSTETNFVIAVTH-GSQRPGSMGR-LA-PGFEARVVDEH----- 360 (542)
T ss_pred CceE---EEEEcCCCHHHHHHHHHHc-CCCEE-eeecccccCccccCCC-CCCCCCCcCc-cC-CCceEEEECCC-----
Confidence 3555 333444 444556666666 57888 999999983 2 2221 1222222222 22 23344555321
Q ss_pred CCCCCCCCCCCcccccCCCcCCCeEEEEEecc------Cce-------------eccccCCEEEec
Q 012549 388 CNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSF------TGK-------------SFISISIKIPIS 434 (461)
Q Consensus 388 ~~~~~~~~~~~~~l~l~Ele~G~~YelVvTt~------~GL-------------yRYriGDvV~v~ 434 (461)
. .+|..|+..||+|+.. .|. -+|++||++++.
T Consensus 361 ----------~-----~~~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~~~~~~~TGD~~~~~ 411 (542)
T PRK06155 361 ----------D-----QELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAWRNLWFHTGDRVVRD 411 (542)
T ss_pred ----------C-----CCCCCCCceEEEEecCCccccchhhcCCHHHHHHhhcCCcEeccceEEEc
Confidence 1 2367889999999875 232 379999999986
No 25
>PRK07638 acyl-CoA synthetase; Validated
Probab=97.43 E-value=0.0064 Score=64.38 Aligned_cols=94 Identities=15% Similarity=0.078 Sum_probs=55.7
Q ss_pred EEEcCC--hHHHHHHHHhHhCCCCcccCccccCceeEEeeCCCCC---CCCCceeeeeCCceEEEEeecCccccCCCCCC
Q 012549 318 SIMTGS--MQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSL---PPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAI 392 (461)
Q Consensus 318 ~~~~G~--~~~y~~~l~~~~~~vpi~~~~Y~aSEg~igi~~~~~~---~~~~~~~~l~p~~~ffEFip~~~~~~~~~~~~ 392 (461)
.+.+|+ ...-.+++++.+++++++ ..||+||+.......+.. .++.++. ..|+ .-++.+..+
T Consensus 258 ~~~~G~~l~~~~~~~~~~~~~~~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~-~~~~-~~~~i~d~~---------- 324 (487)
T PRK07638 258 IISSGAKWEAEAKEKIKNIFPYAKLY-EFYGASELSFVTALVDEESERRPNSVGR-PFHN-VQVRICNEA---------- 324 (487)
T ss_pred EEEcCCCCCHHHHHHHHHHcCCCeEE-EEecCCccCceEEecccccCCCCCCCCc-ccCC-cEEEEECCC----------
Confidence 556666 555567788888888888 899999994222221111 1112232 2222 444544321
Q ss_pred CCCCCCcccccCCCcCCCeEEEEEeccC---cee-------------ccccCCEEEec
Q 012549 393 DDFIEDEPVPLSQVKLGQEYEIVLTSFT---GKS-------------FISISIKIPIS 434 (461)
Q Consensus 393 ~~~~~~~~l~l~Ele~G~~YelVvTt~~---GLy-------------RYriGDvV~v~ 434 (461)
.. ++++|+..||+|++.. |.| .|++||++++.
T Consensus 325 -----g~-----~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~d 372 (487)
T PRK07638 325 -----GE-----EVQKGEIGTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYED 372 (487)
T ss_pred -----CC-----CCCCCCCeEEEEecccceeeecCCHHHHhhhccCCcEecCccEeEc
Confidence 12 3678999999998632 222 46899988776
No 26
>PRK00174 acetyl-CoA synthetase; Provisional
Probab=97.41 E-value=0.0034 Score=69.28 Aligned_cols=24 Identities=29% Similarity=0.235 Sum_probs=20.7
Q ss_pred cceeecccCCCCCcccccccChhcH
Q 012549 106 ITKLSLSSGTTEGRQKYVPFTKHSS 130 (461)
Q Consensus 106 i~~f~~TSGTT~G~~K~IP~T~~~~ 130 (461)
+.+...||||| |+||-+..|+..+
T Consensus 247 ~a~i~~TSGTT-G~PKgV~~s~~~~ 270 (637)
T PRK00174 247 PLFILYTSGST-GKPKGVLHTTGGY 270 (637)
T ss_pred cEEEEECCCCC-CCCceEEeCcchh
Confidence 44888999999 9999999998754
No 27
>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1. This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.
Probab=97.39 E-value=0.0092 Score=63.17 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=22.6
Q ss_pred ccceeecccCCCCCcccccccChhcHHH
Q 012549 105 PITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
-+.+...||||| |.||-++.|.+.+..
T Consensus 142 ~~~~il~TSGTT-G~PK~v~~s~~~~~~ 168 (502)
T TIGR01734 142 DNYYIIYTSGST-GNPKGVQISHDNLVS 168 (502)
T ss_pred CeEEEEECCCCC-CCCCEEEEecHHHHH
Confidence 345889999999 999999999987643
No 28
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=97.39 E-value=0.0035 Score=73.48 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=22.9
Q ss_pred cccceeecccCCCCCcccccccChhcHHH
Q 012549 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
+-+.+...||||| |+||-+..|++.+-.
T Consensus 782 ~~~a~i~~TSGTT-G~PKgv~~s~~~~~~ 809 (1146)
T PRK08633 782 DDTATIIFSSGSE-GEPKGVMLSHHNILS 809 (1146)
T ss_pred CCEEEEEECCCCC-CCCceEEechHHHHH
Confidence 3455888999999 999999999986543
No 29
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.39 E-value=0.0028 Score=67.08 Aligned_cols=30 Identities=27% Similarity=0.398 Sum_probs=24.0
Q ss_pred cCcccceeecccCCCCCcccccccChhcHHH
Q 012549 102 TQEPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 102 ~~~pi~~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
..+-+.+...||||| |.||.++.|...+..
T Consensus 164 ~~~~~a~i~~TSGtT-G~PK~v~~s~~~l~~ 193 (513)
T PRK07656 164 DPDDVADILFTSGTT-GRPKGAMLTHRQLLS 193 (513)
T ss_pred CCCceEEEEeCCCCC-CCCCEEEEecHHHHH
Confidence 344455888999999 999999999886543
No 30
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.38 E-value=0.0048 Score=66.93 Aligned_cols=100 Identities=18% Similarity=0.212 Sum_probs=56.8
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcee-E-Eee-CCCCCCCCCceeeeeCCceEEEEeecCc
Q 012549 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESW-I-GVN-VDPSLPPEDVTFAVIPTFSYFEFIPIHR 383 (461)
Q Consensus 310 WP~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~~~~Y~aSEg~-i-gi~-~~~~~~~~~~~~~l~p~~~ffEFip~~~ 383 (461)
+++++ ++++|+ .....+.+++.+ +++++ ..||+||+. + ..+ ......++..+. ..|+ ..++.++.+.
T Consensus 335 ~~~lr---~i~~gg~~l~~~~~~~~~~~~-~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~-~~~~-~~~~i~d~~~ 407 (573)
T PRK05605 335 LSGVR---NAFSGAMALPVSTVELWEKLT-GGLLV-EGYGLTETSPIIVGNPMSDDRRPGYVGV-PFPD-TEVRIVDPED 407 (573)
T ss_pred chhcc---EEEECCCcCCHHHHHHHHHHh-CCCee-cccccchhchhhhcCCcccCCcCCcccc-CCCC-CEEEEEcCCC
Confidence 35677 555555 444555566656 56887 899999984 2 111 111111122222 2333 3455555332
Q ss_pred cccCCCCCCCCCCCCcccccCCCcCCCeEEEEEecc---Ccee-------------ccccCCEEEec
Q 012549 384 RKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSF---TGKS-------------FISISIKIPIS 434 (461)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~l~Ele~G~~YelVvTt~---~GLy-------------RYriGDvV~v~ 434 (461)
. .. .+..|+..||+|+.. .|.| .|++||+++..
T Consensus 408 ~-------------~~-----~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~ 456 (573)
T PRK05605 408 P-------------DE-----TMPDGEEGELLVRGPQVFKGYWNRPEETAKSFLDGWFRTGDVVVME 456 (573)
T ss_pred C-------------Cc-----cCCCCCeeEEEEecCchhhhhcCChhHhhhcccCCCcccCCEEEEc
Confidence 1 11 257788999999753 3333 49999999886
No 31
>PRK06145 acyl-CoA synthetase; Validated
Probab=97.37 E-value=0.0017 Score=68.82 Aligned_cols=98 Identities=9% Similarity=0.028 Sum_probs=57.2
Q ss_pred CCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCceeEEeeCCC---CC-CCCCceeeeeCCceEEEEeecCc
Q 012549 311 PNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDP---SL-PPEDVTFAVIPTFSYFEFIPIHR 383 (461)
Q Consensus 311 P~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~~~~Y~aSEg~igi~~~~---~~-~~~~~~~~l~p~~~ffEFip~~~ 383 (461)
++++ ++.+|+ ....++.+++.++++++. ..||+||+........ .. .++.++. ..|+ .-.+.++.+
T Consensus 264 ~~l~---~~~~gG~~~~~~~~~~~~~~~~~~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~~~G~-~~~~-~~~~i~~~~- 336 (497)
T PRK06145 264 DSLA---WCIGGGEKTPESRIRDFTRVFTRARYI-DAYGLTETCSGDTLMEAGREIEKIGSTGR-ALAH-VEIRIADGA- 336 (497)
T ss_pred ccce---EEEecCCCCCHHHHHHHHHHcCCCceE-EeecCcccCCcceeccCccccccCCCccc-CCCC-ceEEEECCC-
Confidence 5666 555555 455667788888888888 8999999953211110 00 1111222 2222 222333211
Q ss_pred cccCCCCCCCCCCCCcccccCCCcCCCeEEEEEecc---Ccee-------------ccccCCEEEec
Q 012549 384 RKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSF---TGKS-------------FISISIKIPIS 434 (461)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~l~Ele~G~~YelVvTt~---~GLy-------------RYriGDvV~v~ 434 (461)
. .++..|+..||+++.. .|.| .|++||+++..
T Consensus 337 --------------~-----~~~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~~~~~~~TGDl~~~~ 384 (497)
T PRK06145 337 --------------G-----RWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDVGYLD 384 (497)
T ss_pred --------------C-----CCCCCCCceEEEEECcchhhhhcCChHHHHHHHhCCCeeccceEEEc
Confidence 1 2256788999999863 3444 39999999886
No 32
>PRK04319 acetyl-CoA synthetase; Provisional
Probab=97.37 E-value=0.0049 Score=66.96 Aligned_cols=98 Identities=10% Similarity=0.083 Sum_probs=55.4
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcee-EEe-eCCC-CCCCCCceeeeeCCceEEEEeecCc
Q 012549 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESW-IGV-NVDP-SLPPEDVTFAVIPTFSYFEFIPIHR 383 (461)
Q Consensus 310 WP~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~~~~Y~aSEg~-igi-~~~~-~~~~~~~~~~l~p~~~ffEFip~~~ 383 (461)
+++|+ ++.+|+ .....+.+++.+ ++++. ..||+||.. +.+ +... ...++..+. ..|+ ..++.++.+
T Consensus 322 ~~~lr---~~~~gG~~l~~~~~~~~~~~~-g~~i~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~-p~~g-~~~~i~d~~- 393 (570)
T PRK04319 322 LSSLR---HILSVGEPLNPEVVRWGMKVF-GLPIH-DNWWMTETGGIMIANYPAMDIKPGSMGK-PLPG-IEAAIVDDQ- 393 (570)
T ss_pred cccce---EEEEcccCCCHHHHHHHHHHh-CCCeE-eceeecccCCEEEecCCCCCCCCCcCcC-CCCC-CEEEEECCC-
Confidence 45777 555555 344455566666 46887 999999983 322 2111 111222232 2222 334444422
Q ss_pred cccCCCCCCCCCCCCcccccCCCcCCCeEEEEEecc-----Ccee-------------ccccCCEEEec
Q 012549 384 RKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSF-----TGKS-------------FISISIKIPIS 434 (461)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~l~Ele~G~~YelVvTt~-----~GLy-------------RYriGDvV~v~ 434 (461)
.. ++++|+..||+|+.. .|+| -|++||++++.
T Consensus 394 --------------~~-----~~~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~~gw~~TGDl~~~~ 443 (570)
T PRK04319 394 --------------GN-----ELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFAGDWYVSGDSAYMD 443 (570)
T ss_pred --------------CC-----CCCCCCceEEEEcCCCChHHhHhcCCHHHhhhhhcCCceEeCcEEEEC
Confidence 11 357899999999742 2333 38999999886
No 33
>PRK06839 acyl-CoA synthetase; Validated
Probab=97.36 E-value=0.0047 Score=65.18 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=21.4
Q ss_pred ccceeecccCCCCCcccccccChhcH
Q 012549 105 PITKLSLSSGTTEGRQKYVPFTKHSS 130 (461)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~~ 130 (461)
.+.+...||||| |.||-+.+|...+
T Consensus 150 ~~~~i~~TSGTT-G~PK~v~~s~~~l 174 (496)
T PRK06839 150 ASFIICYTSGTT-GKPKGAVLTQENM 174 (496)
T ss_pred CcEEEEeCCCCC-CCCcEEEEEhHHH
Confidence 345788999999 9999999998865
No 34
>PRK08316 acyl-CoA synthetase; Validated
Probab=97.35 E-value=0.0065 Score=64.49 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=22.8
Q ss_pred CcccceeecccCCCCCcccccccChhcHH
Q 012549 103 QEPITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (461)
Q Consensus 103 ~~pi~~f~~TSGTT~G~~K~IP~T~~~~~ 131 (461)
.+.+.+...||||| |+||-+..|++.+.
T Consensus 170 ~~~~a~i~~TSGtT-G~PK~v~~s~~~l~ 197 (523)
T PRK08316 170 DDDLAQILYTSGTE-SLPKGAMLTHRALI 197 (523)
T ss_pred CCCeEEEEeCCCCC-CCCcEEEEecHHHH
Confidence 34455889999999 99999999988653
No 35
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.35 E-value=0.0029 Score=68.20 Aligned_cols=94 Identities=17% Similarity=0.150 Sum_probs=56.1
Q ss_pred EEEcCC---hHHHHHHHHhHhCCCCcccCccccCcee-EEeeCCCCC---CCCCceeeeeCCceEEEEeecCccccCCCC
Q 012549 318 SIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESW-IGVNVDPSL---PPEDVTFAVIPTFSYFEFIPIHRRKQDCNS 390 (461)
Q Consensus 318 ~~~~G~---~~~y~~~l~~~~~~vpi~~~~Y~aSEg~-igi~~~~~~---~~~~~~~~l~p~~~ffEFip~~~~~~~~~~ 390 (461)
++.+|+ ....++.+++.++++++. ..||+||+. ++.....+. ..+..+. ..| ....+.++.+ .
T Consensus 294 ~i~~gg~~~~~~~~~~~~~~~~~~~l~-~~YG~tE~~~~~~~~~~~~~~~~~~~~G~-~~~-~~~~~i~d~~--~----- 363 (542)
T PRK07786 294 VLSWGAAPASDTLLRQMAATFPEAQIL-AAFGQTEMSPVTCMLLGEDAIRKLGSVGK-VIP-TVAARVVDEN--M----- 363 (542)
T ss_pred EEEECCCCCCHHHHHHHHHHcCCCeEE-eeecccccccceEecCcccccccCCCccc-cCC-CceEEEECCC--C-----
Confidence 555555 455677888888888888 999999983 332221111 0111222 222 2444555422 1
Q ss_pred CCCCCCCCcccccCCCcCCCeEEEEEecc---Ccee-------------ccccCCEEEec
Q 012549 391 AIDDFIEDEPVPLSQVKLGQEYEIVLTSF---TGKS-------------FISISIKIPIS 434 (461)
Q Consensus 391 ~~~~~~~~~~l~l~Ele~G~~YelVvTt~---~GLy-------------RYriGDvV~v~ 434 (461)
.++..|+.+||++... .|+| +|++||+++..
T Consensus 364 -------------~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f~~~~~~TGDl~~~~ 410 (542)
T PRK07786 364 -------------NDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAFAGGWFHSGDLVRQD 410 (542)
T ss_pred -------------CCCcCCCceEEEEEChhhhhhhcCCHHHHHHHhhCCcccccceEEEc
Confidence 1356888999999652 3333 39999999886
No 36
>PRK08180 feruloyl-CoA synthase; Reviewed
Probab=97.33 E-value=0.004 Score=68.52 Aligned_cols=28 Identities=32% Similarity=0.336 Sum_probs=22.7
Q ss_pred cccceeecccCCCCCcccccccChhcHHH
Q 012549 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
+-+.+...||||| |+||-+..|++.+-.
T Consensus 209 ~d~a~ilyTSGTT-G~PKgV~~sh~~l~~ 236 (614)
T PRK08180 209 DTIAKFLFTSGST-GLPKAVINTHRMLCA 236 (614)
T ss_pred CceEEEEECCCCC-CCCCEEEeehHHHHH
Confidence 4455888999999 999999999886543
No 37
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase. This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=97.31 E-value=0.0051 Score=67.68 Aligned_cols=24 Identities=29% Similarity=0.235 Sum_probs=20.5
Q ss_pred cceeecccCCCCCcccccccChhcH
Q 012549 106 ITKLSLSSGTTEGRQKYVPFTKHSS 130 (461)
Q Consensus 106 i~~f~~TSGTT~G~~K~IP~T~~~~ 130 (461)
+.+...||||| |+||-+..|...+
T Consensus 238 ~a~il~TSGTT-G~PKgV~~s~~~~ 261 (625)
T TIGR02188 238 PLFILYTSGST-GKPKGVLHTTGGY 261 (625)
T ss_pred ceEEEecCCCC-CCCCeEEECccHh
Confidence 44889999999 9999999988754
No 38
>PRK06164 acyl-CoA synthetase; Validated
Probab=97.31 E-value=0.012 Score=63.23 Aligned_cols=28 Identities=25% Similarity=0.165 Sum_probs=22.7
Q ss_pred cccceeecccCCCCCcccccccChhcHHH
Q 012549 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
+.+.+...||||| |+||-+..|+..+..
T Consensus 181 ~~~~~i~~TSGtT-G~pK~v~~s~~~l~~ 208 (540)
T PRK06164 181 DAGALLFTTSGTT-SGPKLVLHRQATLLR 208 (540)
T ss_pred CceEEEEECCCCC-CCCcEEEEehHHHHH
Confidence 4455677799999 999999999987654
No 39
>PRK05852 acyl-CoA synthetase; Validated
Probab=97.30 E-value=0.0027 Score=68.17 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=21.5
Q ss_pred ceeecccCCCCCcccccccChhcHHH
Q 012549 107 TKLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 107 ~~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
.+...||||| |+||-|+.|++.+..
T Consensus 179 a~il~TSGTT-G~PKgv~~~~~~~~~ 203 (534)
T PRK05852 179 AMIMFTGGTT-GLPKMVPWTHANIAS 203 (534)
T ss_pred eEEEeCCCCC-CCCcEEEecHHHHHH
Confidence 4788999999 999999999887643
No 40
>PRK07867 acyl-CoA synthetase; Validated
Probab=97.29 E-value=0.0018 Score=69.83 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=21.7
Q ss_pred ccceeecccCCCCCcccccccChhcHH
Q 012549 105 PITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (461)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~~~ 131 (461)
-+.+...||||| |+||-+..|.+.+.
T Consensus 153 ~~~~i~~TSGTT-G~PKgv~~s~~~l~ 178 (529)
T PRK07867 153 DLFMLIFTSGTS-GDPKAVRCTHRKVA 178 (529)
T ss_pred ceEEEEECCCCC-CCCcEEEecHHHHH
Confidence 344778899999 99999999998664
No 41
>PRK09088 acyl-CoA synthetase; Validated
Probab=97.28 E-value=0.0038 Score=66.01 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=21.8
Q ss_pred ccceeecccCCCCCcccccccChhcHH
Q 012549 105 PITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (461)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~~~ 131 (461)
.+.+...||||| |+||-++.|.+.+.
T Consensus 136 ~~~~i~~TSGTT-G~PK~v~~s~~~l~ 161 (488)
T PRK09088 136 RVSLILFTSGTS-GQPKGVMLSERNLQ 161 (488)
T ss_pred CceEEEeCCCCC-CCCcEEEEehHHHH
Confidence 345888999999 99999999988653
No 42
>PRK10946 entE enterobactin synthase subunit E; Provisional
Probab=97.25 E-value=0.0092 Score=64.30 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=23.2
Q ss_pred cccceeecccCCCCCcccccccChhcHHH
Q 012549 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
+-+.++..||||| |+||-++.|++.+..
T Consensus 182 ~~~a~i~~TSGTT-G~PKgV~~s~~~l~~ 209 (536)
T PRK10946 182 DEVAFFQLSGGST-GTPKLIPRTHNDYYY 209 (536)
T ss_pred CCeEEEEeCCCCC-CCCcEEEEehHHHHH
Confidence 3455788899999 999999999997644
No 43
>PRK12583 acyl-CoA synthetase; Provisional
Probab=97.25 E-value=0.0057 Score=65.75 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=22.3
Q ss_pred ccceeecccCCCCCcccccccChhcHHH
Q 012549 105 PITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
-+.+...||||| |.||-+..|+..+..
T Consensus 202 ~~a~i~~TSGsT-G~PK~v~~s~~~l~~ 228 (558)
T PRK12583 202 DPINIQYTSGTT-GFPKGATLSHHNILN 228 (558)
T ss_pred CcEEEEECCCCC-CCCceEEeeHHHHHH
Confidence 345789999999 999999999987643
No 44
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated
Probab=97.24 E-value=0.0021 Score=69.48 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=22.6
Q ss_pred cccceeecccCCCCCcccccccChhcHH
Q 012549 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (461)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~~~ 131 (461)
+-+.+...||||| |.||-+.+|+..+-
T Consensus 204 ~~~a~il~TSGTT-G~PK~v~~s~~~l~ 230 (557)
T PRK07059 204 DDVAFLQYTGGTT-GVSKGATLLHRNIV 230 (557)
T ss_pred CceEEEEeCCCCC-CCCcEEEeecHHHH
Confidence 3455888999999 99999999998653
No 45
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=97.24 E-value=0.0018 Score=77.82 Aligned_cols=30 Identities=27% Similarity=0.176 Sum_probs=23.9
Q ss_pred CcccceeecccCCCCCcccccccChhcHHHH
Q 012549 103 QEPITKLSLSSGTTEGRQKYVPFTKHSSQTT 133 (461)
Q Consensus 103 ~~pi~~f~~TSGTT~G~~K~IP~T~~~~~~~ 133 (461)
++-+.+...||||| |+||-+.+|++.+..+
T Consensus 414 ~~d~a~ii~TSGST-G~PKgV~~sh~~l~~~ 443 (1389)
T TIGR03443 414 PDSNPTLSFTSGSE-GIPKGVLGRHFSLAYY 443 (1389)
T ss_pred CCCceEEEECCCCC-CCCCEEEeccHHHHHH
Confidence 33455888999999 9999999999876543
No 46
>PRK07470 acyl-CoA synthetase; Validated
Probab=97.22 E-value=0.0076 Score=64.50 Aligned_cols=28 Identities=29% Similarity=0.309 Sum_probs=23.2
Q ss_pred CcccceeecccCCCCCcccccccChhcHH
Q 012549 103 QEPITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (461)
Q Consensus 103 ~~pi~~f~~TSGTT~G~~K~IP~T~~~~~ 131 (461)
.+.+.+...||||| |.||-++.|+..+.
T Consensus 162 ~~~~a~i~~TSGTT-G~PK~v~~s~~~l~ 189 (528)
T PRK07470 162 HDDPCWFFFTSGTT-GRPKAAVLTHGQMA 189 (528)
T ss_pred CCCeEEEEeCCCCC-CCCcEEEEehhhHH
Confidence 34455889999999 99999999998763
No 47
>PLN02330 4-coumarate--CoA ligase-like 1
Probab=97.21 E-value=0.0063 Score=65.65 Aligned_cols=26 Identities=38% Similarity=0.401 Sum_probs=21.8
Q ss_pred ccceeecccCCCCCcccccccChhcHH
Q 012549 105 PITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (461)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~~~ 131 (461)
-+.+...||||| |+||-+..|+..+.
T Consensus 185 ~~a~il~TSGTT-G~PKgv~~s~~~l~ 210 (546)
T PLN02330 185 DLCALPFSSGTT-GISKGVMLTHRNLV 210 (546)
T ss_pred cEEEEEeCCCCc-CCCcEEEEehHHHH
Confidence 344778999999 99999999988654
No 48
>PRK12467 peptide synthase; Provisional
Probab=97.21 E-value=0.0037 Score=82.50 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=24.5
Q ss_pred CcccceeecccCCCCCcccccccChhcHHHH
Q 012549 103 QEPITKLSLSSGTTEGRQKYVPFTKHSSQTT 133 (461)
Q Consensus 103 ~~pi~~f~~TSGTT~G~~K~IP~T~~~~~~~ 133 (461)
++-+.+...||||| |+||-+.+|++.+..+
T Consensus 655 ~~~~a~iiyTSGST-G~PKgV~~th~~l~~~ 684 (3956)
T PRK12467 655 PDNLAYVIYTSGST-GQPKGVAISHGALANY 684 (3956)
T ss_pred CCCeEEEEECCCCC-CCcCEEEEecHHHHHH
Confidence 44456889999999 9999999999876543
No 49
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated. This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.
Probab=97.21 E-value=0.018 Score=61.15 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=21.9
Q ss_pred cceeecccCCCCCcccccccChhcHHH
Q 012549 106 ITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 106 i~~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
+.+...||||| |+||-+..|...+..
T Consensus 163 ~~~i~~TSGTT-G~PK~v~~t~~~l~~ 188 (515)
T TIGR03098 163 MAAILYTSGST-GRPKGVVLSHRNLVA 188 (515)
T ss_pred eEEEEECCCCC-CCCceEEEecHHHHH
Confidence 44778999999 999999999987643
No 50
>PRK08974 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.20 E-value=0.0081 Score=64.94 Aligned_cols=28 Identities=29% Similarity=0.313 Sum_probs=22.8
Q ss_pred cccceeecccCCCCCcccccccChhcHHH
Q 012549 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
+-+.+...||||| |+||-+..|+..+..
T Consensus 206 ~~~a~i~~TSGtT-G~PK~v~~t~~~l~~ 233 (560)
T PRK08974 206 EDLAFLQYTGGTT-GVAKGAMLTHRNMLA 233 (560)
T ss_pred CCeEEEEECCCCC-CCCcEEEEchHHHHH
Confidence 3455788899999 999999999887643
No 51
>PRK12467 peptide synthase; Provisional
Probab=97.18 E-value=0.0012 Score=86.83 Aligned_cols=29 Identities=24% Similarity=0.298 Sum_probs=23.7
Q ss_pred CcccceeecccCCCCCcccccccChhcHHH
Q 012549 103 QEPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 103 ~~pi~~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
++-+.+...||||| |+||-+.+|++.+..
T Consensus 3236 ~~~~a~ii~TSGST-G~PKgV~~~h~~l~~ 3264 (3956)
T PRK12467 3236 GENLAYVIYTSGST-GKPKGVGVRHGALAN 3264 (3956)
T ss_pred CCceEEEEEccCCC-CCcceeeehhHHHHH
Confidence 34455889999999 999999999887654
No 52
>PLN02736 long-chain acyl-CoA synthetase
Probab=97.16 E-value=0.0053 Score=68.09 Aligned_cols=27 Identities=33% Similarity=0.402 Sum_probs=22.3
Q ss_pred cccceeecccCCCCCcccccccChhcHH
Q 012549 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (461)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~~~ 131 (461)
+-+.+...||||| |+||-+..|++.+-
T Consensus 221 dd~a~IlyTSGTT-G~PKGV~lsh~~l~ 247 (651)
T PLN02736 221 EDVATICYTSGTT-GTPKGVVLTHGNLI 247 (651)
T ss_pred cceEEEEEcCCCC-CCCcEEEEecHHHH
Confidence 3455788999999 99999999988653
No 53
>PLN02860 o-succinylbenzoate-CoA ligase
Probab=97.11 E-value=0.0086 Score=65.02 Aligned_cols=38 Identities=24% Similarity=0.486 Sum_probs=28.0
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcee
Q 012549 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESW 351 (461)
Q Consensus 310 WP~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~~~~Y~aSEg~ 351 (461)
.++++ .+++|+ ...-.+++++.+++++++ ..||+||+.
T Consensus 287 ~~~lr---~~~~gG~~l~~~~~~~~~~~~~~~~~~-~~YG~TE~~ 327 (563)
T PLN02860 287 FPSVR---KILNGGGSLSSRLLPDAKKLFPNAKLF-SAYGMTEAC 327 (563)
T ss_pred cccee---EEEeCCCcCCHHHHHHHHHhcCCCcee-cCCCccccC
Confidence 45677 666665 444556677788888988 999999974
No 54
>PRK08279 long-chain-acyl-CoA synthetase; Validated
Probab=97.11 E-value=0.0044 Score=67.75 Aligned_cols=28 Identities=21% Similarity=0.140 Sum_probs=22.9
Q ss_pred cccceeecccCCCCCcccccccChhcHHH
Q 012549 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
+.+.+...||||| |+||-+..|++.+..
T Consensus 199 ~~~a~il~TSGTT-G~PKgV~~sh~~l~~ 226 (600)
T PRK08279 199 KDTAFYIYTSGTT-GLPKAAVMSHMRWLK 226 (600)
T ss_pred cccEEEEEcCCCC-CCCcEEEEeHHHHHH
Confidence 3345788999999 899999999987644
No 55
>TIGR02316 propion_prpE propionate--CoA ligase. This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.
Probab=97.10 E-value=0.013 Score=64.66 Aligned_cols=26 Identities=27% Similarity=0.218 Sum_probs=21.3
Q ss_pred cccceeecccCCCCCcccccccChhcH
Q 012549 104 EPITKLSLSSGTTEGRQKYVPFTKHSS 130 (461)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~~ 130 (461)
+.+.+...||||| |+||-|..++..+
T Consensus 232 ~~~a~ilyTSGTT-G~PKgV~~sh~~~ 257 (628)
T TIGR02316 232 NEPSYILYTSGTT-GKPKGVQRDVGGY 257 (628)
T ss_pred CCcEEEEECCCCC-CCCceEEECCcHH
Confidence 3445889999999 9999999887754
No 56
>PRK10524 prpE propionyl-CoA synthetase; Provisional
Probab=97.09 E-value=0.0098 Score=65.47 Aligned_cols=25 Identities=28% Similarity=0.239 Sum_probs=20.4
Q ss_pred ccceeecccCCCCCcccccccChhcH
Q 012549 105 PITKLSLSSGTTEGRQKYVPFTKHSS 130 (461)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~~ 130 (461)
-+.+...||||| |+||-+..+...+
T Consensus 234 d~a~il~TSGTT-G~PKgV~~~~~~~ 258 (629)
T PRK10524 234 EPSYILYTSGTT-GKPKGVQRDTGGY 258 (629)
T ss_pred CceEEEeecCCC-CCCceEEECCcHH
Confidence 345889999999 9999998877643
No 57
>PRK13388 acyl-CoA synthetase; Provisional
Probab=97.09 E-value=0.0072 Score=65.30 Aligned_cols=29 Identities=28% Similarity=0.198 Sum_probs=23.5
Q ss_pred cCcccceeecccCCCCCcccccccChhcHH
Q 012549 102 TQEPITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (461)
Q Consensus 102 ~~~pi~~f~~TSGTT~G~~K~IP~T~~~~~ 131 (461)
.++.+.+...||||| |+||-+..|+..+.
T Consensus 148 ~~~~~a~i~~TSGTT-G~PKgv~~s~~~~~ 176 (540)
T PRK13388 148 DAMDPFMLIFTSGTT-GAPKAVRCSHGRLA 176 (540)
T ss_pred CCCCeEEEEECCCCC-CCCCEEEecHHHHH
Confidence 345566889999999 99999999987653
No 58
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.06 E-value=0.0066 Score=65.20 Aligned_cols=27 Identities=30% Similarity=0.317 Sum_probs=22.4
Q ss_pred ccceeecccCCCCCcccccccChhcHHH
Q 012549 105 PITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
-+.+...||||| |+||-+..|++.+..
T Consensus 191 ~~a~i~~TSGtT-G~PK~v~~s~~~l~~ 217 (546)
T PRK08314 191 DLAVLPYTSGTT-GVPKGCMHTHRTVMA 217 (546)
T ss_pred CeEEEEeCCCCC-CCCcEEEEecHHHHH
Confidence 344788899999 999999999986643
No 59
>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]
Probab=97.05 E-value=0.0065 Score=67.15 Aligned_cols=86 Identities=21% Similarity=0.310 Sum_probs=55.8
Q ss_pred EEEcCC--hHHHHHHHHhHhCCCCcccCccccCceeEEeeCCCCCCCCCceeeeeCCceEEEEeecCccccCCCCCCCCC
Q 012549 318 SIMTGS--MQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDF 395 (461)
Q Consensus 318 ~~~~G~--~~~y~~~l~~~~~~vpi~~~~Y~aSEg~igi~~~~~~~~~~~~~~l~p~~~ffEFip~~~~~~~~~~~~~~~ 395 (461)
-..+|| ..+...+.=+-. ++|+. .|||-||..=++.+.+.. .|.+ +
T Consensus 357 ~~~sGGa~l~~~~~~f~~~l-Gi~i~-eGYGlTEts~~~~v~~~~----------------~~~~----g---------- 404 (613)
T COG1022 357 YALSGGAPLSPELLHFFRSL-GIPIL-EGYGLTETSAVVSVNPPD----------------RFVL----G---------- 404 (613)
T ss_pred EEEecCCcCCHHHHHHHHHc-CCCeE-EEecccccccceEEcccc----------------Cccc----C----------
Confidence 444555 444433333334 49999 999999985443333221 1111 1
Q ss_pred CCCcccccCCCcCCCeEEEEEec---cCceec--------------cccCCEEEecc
Q 012549 396 IEDEPVPLSQVKLGQEYEIVLTS---FTGKSF--------------ISISIKIPISM 435 (461)
Q Consensus 396 ~~~~~l~l~Ele~G~~YelVvTt---~~GLyR--------------YriGDvV~v~g 435 (461)
..+.++.-.|++.+++.||.|-. ..|.|. +++||+.+++.
T Consensus 405 tvG~p~p~~evKI~d~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~ 461 (613)
T COG1022 405 TVGKPLPGIEVKIADDGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDE 461 (613)
T ss_pred CcCCcCCCceEEEccCceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEcC
Confidence 34577788899999999999966 566664 78999988885
No 60
>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional
Probab=97.05 E-value=0.032 Score=60.52 Aligned_cols=26 Identities=31% Similarity=0.300 Sum_probs=21.8
Q ss_pred cceeecccCCCCCcccccccChhcHHH
Q 012549 106 ITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 106 i~~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
+.+...||||| |+||-+..|+..+..
T Consensus 209 ~a~i~~TSGTT-G~PKgv~~s~~~l~~ 234 (562)
T PRK12492 209 IAVLQYTGGTT-GLAKGAMLTHGNLVA 234 (562)
T ss_pred eEEEEeCCCCC-CCCceEEEechhHHH
Confidence 44788999999 999999999886643
No 61
>PRK13382 acyl-CoA synthetase; Provisional
Probab=97.05 E-value=0.0045 Score=66.76 Aligned_cols=98 Identities=11% Similarity=0.025 Sum_probs=55.6
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcee-EEe-eCCC-CCCCCCceeeeeCCceEEEEeecCc
Q 012549 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESW-IGV-NVDP-SLPPEDVTFAVIPTFSYFEFIPIHR 383 (461)
Q Consensus 310 WP~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~~~~Y~aSEg~-igi-~~~~-~~~~~~~~~~l~p~~~ffEFip~~~ 383 (461)
+++++ .+..|+ ....+.++++.+| .++. .+||+||+. ++. +... ...++..+. ..| ..-++.++.+
T Consensus 311 ~~~lr---~i~~gG~~l~~~~~~~~~~~~~-~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~vG~-p~~-~~~~~i~d~~- 382 (537)
T PRK13382 311 GRSLR---FAAASGSRMRPDVVIAFMDQFG-DVIY-NNYNATEAGMIATATPADLRAAPDTAGR-PAE-GTEIRILDQD- 382 (537)
T ss_pred cccee---EEEEcCCCCCHHHHHHHHHHcC-CcEE-ecccccccCcceecChhHhccCCCCccc-cCc-CcEEEEECCC-
Confidence 35677 555555 5556677777775 5776 999999984 322 1110 001111222 222 2333444321
Q ss_pred cccCCCCCCCCCCCCcccccCCCcCCCeEEEEEeccCce-------------eccccCCEEEec
Q 012549 384 RKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFTGK-------------SFISISIKIPIS 434 (461)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~l~Ele~G~~YelVvTt~~GL-------------yRYriGDvV~v~ 434 (461)
. .++..|+..||+|++..-+ -.|++||+++..
T Consensus 383 --------------~-----~~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~g~~~TGDl~~~~ 427 (537)
T PRK13382 383 --------------F-----REVPTGEVGTIFVRNDTQFDGYTSGSTKDFHDGFMASGDVGYLD 427 (537)
T ss_pred --------------C-----CCCCCCCeeEEEEEcCCcccCccccchhhccCCCEeeCceEEEe
Confidence 1 2357899999999874211 257999998886
No 62
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.
Probab=97.02 E-value=0.0065 Score=65.37 Aligned_cols=27 Identities=37% Similarity=0.416 Sum_probs=21.8
Q ss_pred cccceeecccCCCCCcccccccChhcHH
Q 012549 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (461)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~~~ 131 (461)
+-+.+...||||| |.||-+..+++.+-
T Consensus 195 ~~~a~i~~TSGtT-G~PK~v~~s~~~~~ 221 (538)
T TIGR03208 195 DDVTQLIYTSGTT-GEPKGVMHTANTLF 221 (538)
T ss_pred CCeEEEEECCCCC-CCCcEEEeehHHHH
Confidence 4455778899999 99999999987553
No 63
>PLN02614 long-chain acyl-CoA synthetase
Probab=97.00 E-value=0.015 Score=64.92 Aligned_cols=28 Identities=36% Similarity=0.373 Sum_probs=22.8
Q ss_pred cccceeecccCCCCCcccccccChhcHHH
Q 012549 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
+-+.+...||||| |+||=+..|++.+-.
T Consensus 223 ~d~a~I~yTSGTT-G~PKGV~lth~nl~~ 250 (666)
T PLN02614 223 SDICTIMYTSGTT-GDPKGVMISNESIVT 250 (666)
T ss_pred CceEEEEEcCCCC-CCCcEEEEecHHHHH
Confidence 4455788999999 999999999986543
No 64
>PRK12316 peptide synthase; Provisional
Probab=96.98 E-value=0.0032 Score=84.73 Aligned_cols=29 Identities=28% Similarity=0.359 Sum_probs=23.3
Q ss_pred CcccceeecccCCCCCcccccccChhcHHH
Q 012549 103 QEPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 103 ~~pi~~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
++-+.+...||||| |+||-+.+|++.+..
T Consensus 4693 ~~~~a~ii~TSGST-G~PKgV~~~h~~l~~ 4721 (5163)
T PRK12316 4693 PDNLAYVIYTSGST-GRPKGVAVSHGSLVN 4721 (5163)
T ss_pred CCceEEEEECCCCC-CCCCEeeeccHHHHH
Confidence 33455888999999 999999999986644
No 65
>PRK12582 acyl-CoA synthetase; Provisional
Probab=96.92 E-value=0.0095 Score=65.70 Aligned_cols=28 Identities=29% Similarity=0.327 Sum_probs=22.3
Q ss_pred cccceeecccCCCCCcccccccChhcHHH
Q 012549 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
+.+.+...||||| |+||-+..|+..+..
T Consensus 220 ~d~a~i~yTSGTT-G~PKgV~~th~~l~~ 247 (624)
T PRK12582 220 DTVAKYLFTSGST-GMPKAVINTQRMMCA 247 (624)
T ss_pred CceEEEEEcCCCC-CCCceEEeeHHHHHH
Confidence 3455788899999 999999999876543
No 66
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.
Probab=96.92 E-value=0.02 Score=61.39 Aligned_cols=29 Identities=28% Similarity=0.442 Sum_probs=23.4
Q ss_pred CcccceeecccCCCCCcccccccChhcHHH
Q 012549 103 QEPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 103 ~~pi~~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
++-+.+...||||| |.||-+..|+..+..
T Consensus 182 ~~~~a~i~~TSGTT-G~PKgv~~s~~~~~~ 210 (527)
T TIGR02275 182 SDEVAFFQLSGGST-GTPKLIPRTHNDYYY 210 (527)
T ss_pred CCccEEEEeCCCCC-CCCceeeeehHHHHH
Confidence 33455888999999 999999999987644
No 67
>PRK07787 acyl-CoA synthetase; Validated
Probab=96.91 E-value=0.032 Score=58.99 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=22.0
Q ss_pred cceeecccCCCCCcccccccChhcHHH
Q 012549 106 ITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 106 i~~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
+.+...||||| |.||-|..|++.+..
T Consensus 130 ~a~i~~TSGTT-G~PK~v~~t~~~l~~ 155 (471)
T PRK07787 130 PALIVYTSGTT-GPPKGVVLSRRAIAA 155 (471)
T ss_pred eEEEEECCCCC-CCCCEEEEeHHHHHH
Confidence 44888999999 999999999886644
No 68
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=96.90 E-value=0.014 Score=64.80 Aligned_cols=23 Identities=30% Similarity=0.260 Sum_probs=20.1
Q ss_pred cceeecccCCCCCcccccccChhc
Q 012549 106 ITKLSLSSGTTEGRQKYVPFTKHS 129 (461)
Q Consensus 106 i~~f~~TSGTT~G~~K~IP~T~~~ 129 (461)
+.+...||||| |+||-+..|...
T Consensus 256 ~~~IlyTSGTT-G~PKgV~~sh~~ 278 (647)
T PTZ00237 256 PLYILYTSGTT-GNSKAVVRSNGP 278 (647)
T ss_pred cEEEEEcCCCC-CCCCeEEEcCcH
Confidence 44889999999 999999998874
No 69
>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional
Probab=96.90 E-value=0.016 Score=61.81 Aligned_cols=97 Identities=15% Similarity=0.129 Sum_probs=55.8
Q ss_pred CCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcee-EEeeC-C-CCCCCCCceeeeeCCceEEEEeecCcc
Q 012549 311 PNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESW-IGVNV-D-PSLPPEDVTFAVIPTFSYFEFIPIHRR 384 (461)
Q Consensus 311 P~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~~~~Y~aSEg~-igi~~-~-~~~~~~~~~~~l~p~~~ffEFip~~~~ 384 (461)
++++ .+++|+ ....++++++.+ ++++. ..||+||+. ++... . ....++..+. ..|+. -++.+..+
T Consensus 271 ~~l~---~v~~gg~~~~~~~~~~~~~~~-~~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~-~~~~~-~~~i~d~~-- 341 (509)
T PRK12406 271 SSLR---HVIHAAAPCPADVKRAMIEWW-GPVIY-EYYGSTESGAVTFATSEDALSHPGTVGK-AAPGA-ELRFVDED-- 341 (509)
T ss_pred Ccee---EEEEcCCCCCHHHHHHHHHHc-CCcEE-eeccccccCceEecCcccccccCCCcCc-cCCCc-EEEEECCC--
Confidence 4666 555555 456667788777 46777 999999984 33211 1 1111222333 23332 23444311
Q ss_pred ccCCCCCCCCCCCCcccccCCCcCCCeEEEEEeccC----cee-------------ccccCCEEEec
Q 012549 385 KQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFT----GKS-------------FISISIKIPIS 434 (461)
Q Consensus 385 ~~~~~~~~~~~~~~~~l~l~Ele~G~~YelVvTt~~----GLy-------------RYriGDvV~v~ 434 (461)
. ..+..|+..||+++... |+| -|++||+++..
T Consensus 342 -------------~-----~~~~~g~~Gel~v~~~~~~~~~y~~~~~~~~~~~~~~~~~TGD~~~~~ 390 (509)
T PRK12406 342 -------------G-----RPLPQGEIGEIYSRIAGNPDFTYHNKPEKRAEIDRGGFITSGDVGYLD 390 (509)
T ss_pred -------------C-----CCCCCCCceEEEEECCccccccccCCchhcccccCCCCeEEccEEEEc
Confidence 1 23678999999997643 333 27899998885
No 70
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=96.89 E-value=0.035 Score=58.50 Aligned_cols=25 Identities=32% Similarity=0.351 Sum_probs=20.7
Q ss_pred ccceeecccCCCCCcccccccChhcH
Q 012549 105 PITKLSLSSGTTEGRQKYVPFTKHSS 130 (461)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~~ 130 (461)
-+.+...||||| |+||.|..|...+
T Consensus 142 ~~a~i~~TSGtT-G~PK~v~~s~~~~ 166 (483)
T PRK03640 142 EVATIMYTSGTT-GKPKGVIQTYGNH 166 (483)
T ss_pred CeEEEEeCCCcC-CCCcEEEEecHHH
Confidence 345778899999 9999999998754
No 71
>PLN02861 long-chain-fatty-acid-CoA ligase
Probab=96.84 E-value=0.011 Score=65.92 Aligned_cols=27 Identities=33% Similarity=0.367 Sum_probs=22.1
Q ss_pred cccceeecccCCCCCcccccccChhcHH
Q 012549 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (461)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~~~ 131 (461)
+-+.....||||| |.||=+..|+..+-
T Consensus 220 dd~a~i~yTSGTT-G~PKGV~lth~~l~ 246 (660)
T PLN02861 220 TDICTIMYTSGTT-GEPKGVILTNRAII 246 (660)
T ss_pred CceEEEEecCCCC-CCCCEEEEecHHHH
Confidence 3345788999999 99999999988653
No 72
>PLN02387 long-chain-fatty-acid-CoA ligase family protein
Probab=96.82 E-value=0.041 Score=61.80 Aligned_cols=27 Identities=30% Similarity=0.299 Sum_probs=22.2
Q ss_pred cccceeecccCCCCCcccccccChhcHH
Q 012549 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (461)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~~~ 131 (461)
+-+.....||||| |+||-+..|++.+-
T Consensus 250 dd~a~I~yTSGTT-G~PKGV~lth~~l~ 276 (696)
T PLN02387 250 NDIAVIMYTSGST-GLPKGVMMTHGNIV 276 (696)
T ss_pred cceEEEEecCCCC-CCCCEEEEEcHHHH
Confidence 3455788999999 99999999988654
No 73
>PRK08308 acyl-CoA synthetase; Validated
Probab=96.82 E-value=0.022 Score=59.19 Aligned_cols=27 Identities=30% Similarity=0.277 Sum_probs=22.1
Q ss_pred ccceeecccCCCCCcccccccChhcHHH
Q 012549 105 PITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
...+...||||| |+||-+..|++.+..
T Consensus 102 ~~~~i~~TSGtT-G~PKgv~~s~~~l~~ 128 (414)
T PRK08308 102 EPSLLQYSSGTT-GEPKLIRRSWTEIDR 128 (414)
T ss_pred CceEEEECCCCC-CCCcEEEEehHhHHH
Confidence 344778899999 999999999886644
No 74
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.78 E-value=0.0057 Score=63.58 Aligned_cols=25 Identities=36% Similarity=0.535 Sum_probs=22.0
Q ss_pred ccceeecccCCCCCcccccccChhcH
Q 012549 105 PITKLSLSSGTTEGRQKYVPFTKHSS 130 (461)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~~ 130 (461)
-+.+|.+|+||| |.||+||-|+.-+
T Consensus 190 ~vA~fqLSGGTT-GtPKLIPRtH~DY 214 (542)
T COG1021 190 EVAFFQLSGGTT-GTPKLIPRTHNDY 214 (542)
T ss_pred ceEEEEecCCCC-CCCccccccccce
Confidence 378999999999 9999999998754
No 75
>PRK06710 long-chain-fatty-acid--CoA ligase; Validated
Probab=96.77 E-value=0.054 Score=58.60 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=21.9
Q ss_pred ccceeecccCCCCCcccccccChhcHH
Q 012549 105 PITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (461)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~~~ 131 (461)
.+.++..||||| |.||-+..|++.+.
T Consensus 207 ~~a~i~~TSGTT-G~PK~v~~s~~~l~ 232 (563)
T PRK06710 207 DLALLQYTGGTT-GFPKGVMLTHKNLV 232 (563)
T ss_pred CEEEEEcCCCCC-CCCceEEEehHHHH
Confidence 345788999999 99999999988763
No 76
>PRK08315 AMP-binding domain protein; Validated
Probab=96.76 E-value=0.037 Score=59.62 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=22.5
Q ss_pred cccceeecccCCCCCcccccccChhcHH
Q 012549 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (461)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~~~ 131 (461)
+.+.+...||||| |+||-++.|++.+.
T Consensus 199 ~~~a~i~~TSGtT-G~PK~v~~s~~~l~ 225 (559)
T PRK08315 199 DDPINIQYTSGTT-GFPKGATLTHRNIL 225 (559)
T ss_pred CCcEEEEEcCCCC-CCcceEEeeHHHHH
Confidence 3445889999999 99999999998663
No 77
>PRK13383 acyl-CoA synthetase; Provisional
Probab=96.75 E-value=0.028 Score=60.14 Aligned_cols=98 Identities=16% Similarity=0.102 Sum_probs=53.7
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCceeE-EeeCCCC--CCCCCceeeeeCCceEEEEeecCc
Q 012549 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWI-GVNVDPS--LPPEDVTFAVIPTFSYFEFIPIHR 383 (461)
Q Consensus 310 WP~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~~~~Y~aSEg~i-gi~~~~~--~~~~~~~~~l~p~~~ffEFip~~~ 383 (461)
.|.++ .+++|+ ....++++++.++ +++. ..||+||+.. .+.-... ..++..+. ..|+ .-++.+..+
T Consensus 291 ~~~lr---~i~~gG~~l~~~~~~~~~~~~g-~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~-~~~~-~~~~i~d~~- 362 (516)
T PRK13383 291 LPQLR---VVMSSGDRLDPTLGQRFMDTYG-DILY-NGYGSTEVGIGALATPADLRDAPETVGK-PVAG-CPVRILDRN- 362 (516)
T ss_pred CCceE---EEEECCCCCCHHHHHHHHHHcC-chhh-hcccccccccceeccccccccCCCcccC-CCCC-cEEEEECCC-
Confidence 45666 555555 4555666777774 6777 9999999842 2211100 00111221 1222 223444311
Q ss_pred cccCCCCCCCCCCCCcccccCCCcCCCeEEEEEeccCceec-------------cccCCEEEec
Q 012549 384 RKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFTGKSF-------------ISISIKIPIS 434 (461)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~l~Ele~G~~YelVvTt~~GLyR-------------YriGDvV~v~ 434 (461)
.+ .+.+|+..||+|+...-..| |++||+.+..
T Consensus 363 --------------~~-----~~~~g~~Gel~v~g~~~~~~Y~~~~~~~~~~g~~~TGDl~~~d 407 (516)
T PRK13383 363 --------------NR-----PVGPRVTGRIFVGGELAGTRYTDGGGKAVVDGMTSTGDMGYLD 407 (516)
T ss_pred --------------CC-----CCCCCCceEEEEecCcccccccCCchhheecCceecceeEEEc
Confidence 11 25678889999986444434 4599988875
No 78
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional
Probab=96.73 E-value=0.018 Score=62.23 Aligned_cols=28 Identities=29% Similarity=0.310 Sum_probs=22.7
Q ss_pred cccceeecccCCCCCcccccccChhcHHH
Q 012549 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
+-+.+...||||| |+||-|.+|++.+-.
T Consensus 208 ~~~~~i~~TSGTT-G~PK~v~~s~~~l~~ 235 (560)
T PRK08751 208 DDIAFLQYTGGTT-GVAKGAMLTHRNLVA 235 (560)
T ss_pred ccEEEEEcCCCCC-CCCCEEEEccHHHHH
Confidence 3345788899999 999999999986543
No 79
>PRK12316 peptide synthase; Provisional
Probab=96.73 E-value=0.02 Score=77.46 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=23.1
Q ss_pred cccceeecccCCCCCcccccccChhcHHH
Q 012549 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
+-+.+...||||| |+||-+.++++.+..
T Consensus 3196 ~~~ayii~TSGST-G~PKgV~~~h~~l~~ 3223 (5163)
T PRK12316 3196 ENLAYVIYTSGST-GKPKGVGIRHSALSN 3223 (5163)
T ss_pred CCeEEEEeCCCCC-CCCCEEEEccHHHHH
Confidence 3345788999999 999999999997654
No 80
>PRK05857 acyl-CoA synthetase; Validated
Probab=96.68 E-value=0.027 Score=60.78 Aligned_cols=28 Identities=29% Similarity=0.312 Sum_probs=23.0
Q ss_pred CcccceeecccCCCCCcccccccChhcHH
Q 012549 103 QEPITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (461)
Q Consensus 103 ~~pi~~f~~TSGTT~G~~K~IP~T~~~~~ 131 (461)
.+.+.++..||||| |.||-+..|+..+-
T Consensus 168 ~~~~a~i~~TSGTT-G~PKgV~~sh~~~~ 195 (540)
T PRK05857 168 SEDPLAMIFTSGTT-GEPKAVLLANRTFF 195 (540)
T ss_pred CCCeEEEEeCCCCC-CCCCeEEEechhhh
Confidence 34455889999999 99999999998653
No 81
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family. Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.
Probab=96.66 E-value=0.047 Score=58.13 Aligned_cols=29 Identities=28% Similarity=0.153 Sum_probs=23.6
Q ss_pred CcccceeecccCCCCCcccccccChhcHHH
Q 012549 103 QEPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 103 ~~pi~~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
++.+.+...||||| |+||-+..|++.+..
T Consensus 160 ~~~~a~i~~TSGTT-G~PK~v~~s~~~~~~ 188 (508)
T TIGR02262 160 ADDPAFWLYSSGST-GMPKGVVHTHSNPYW 188 (508)
T ss_pred CCCcEEEEeCCCCC-CCCcEEEEechhHHH
Confidence 34455888999999 999999999987654
No 82
>PLN02246 4-coumarate--CoA ligase
Probab=96.56 E-value=0.014 Score=62.86 Aligned_cols=27 Identities=37% Similarity=0.396 Sum_probs=22.0
Q ss_pred cccceeecccCCCCCcccccccChhcHH
Q 012549 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (461)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~~~ 131 (461)
+.+.++..||||| |.||-+..|.+.+.
T Consensus 179 ~~~~~i~~TSGtT-G~PKgv~~s~~~l~ 205 (537)
T PLN02246 179 DDVVALPYSSGTT-GLPKGVMLTHKGLV 205 (537)
T ss_pred cCEEEEEeCCCCC-CCCceEEEeHHHHH
Confidence 3455778899999 99999999988654
No 83
>PRK05691 peptide synthase; Validated
Probab=96.52 E-value=0.045 Score=73.22 Aligned_cols=30 Identities=20% Similarity=0.230 Sum_probs=24.5
Q ss_pred cCcccceeecccCCCCCcccccccChhcHHH
Q 012549 102 TQEPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 102 ~~~pi~~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
.++-+.+...||||| |+||-+-++++.+..
T Consensus 3867 ~~~~~ayvi~TSGST-G~PKGV~~~h~~~~~ 3896 (4334)
T PRK05691 3867 GPDNLAYVIYTSGST-GLPKGVMVEQRGMLN 3896 (4334)
T ss_pred CCCceEEEEECCCCC-CCCCEEEeehHHHHH
Confidence 345566888999999 999999999887644
No 84
>PTZ00342 acyl-CoA synthetase; Provisional
Probab=96.50 E-value=0.047 Score=62.10 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=22.2
Q ss_pred cccceeecccCCCCCcccccccChhcHH
Q 012549 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (461)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~~~ 131 (461)
+-+.....||||| |.||=+..|++.+-
T Consensus 304 dd~a~IiYTSGTT-G~PKGVmlTH~nl~ 330 (746)
T PTZ00342 304 DFITSIVYTSGTS-GKPKGVMLSNKNLY 330 (746)
T ss_pred cceEEEEEcCCCC-CCCCEEEEccHHHH
Confidence 3355789999999 99999999987653
No 85
>PLN02654 acetate-CoA ligase
Probab=96.47 E-value=0.055 Score=60.44 Aligned_cols=25 Identities=32% Similarity=0.232 Sum_probs=20.8
Q ss_pred ccceeecccCCCCCcccccccChhcH
Q 012549 105 PITKLSLSSGTTEGRQKYVPFTKHSS 130 (461)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~~ 130 (461)
-+.+...||||| |+||-|..|+..+
T Consensus 276 d~~~ilyTSGTT-G~PKgVv~sh~~~ 300 (666)
T PLN02654 276 DPLFLLYTSGST-GKPKGVLHTTGGY 300 (666)
T ss_pred CceEEEecCCCC-CCCceEEecccHH
Confidence 344888999999 9999999988754
No 86
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.45 E-value=0.023 Score=61.76 Aligned_cols=36 Identities=19% Similarity=0.458 Sum_probs=27.7
Q ss_pred CCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcee
Q 012549 312 NAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESW 351 (461)
Q Consensus 312 ~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~~~~Y~aSEg~ 351 (461)
+|+ ++.+|+ -..-.+++++.++..++. .+||.||+.
T Consensus 292 ~lr---~~~~gg~~~~~~~~~~~~~~~~~~~i~-~~YG~TE~~ 330 (534)
T COG0318 292 SLR---LVLSGGAPLPPELLERFEERFGPIAIL-EGYGLTETS 330 (534)
T ss_pred ceE---EEEecCCcCCHHHHHHHHHHhCCCceE-EeecccccC
Confidence 466 777777 356677777788766777 999999994
No 87
>PLN02430 long-chain-fatty-acid-CoA ligase
Probab=96.45 E-value=0.099 Score=58.40 Aligned_cols=29 Identities=31% Similarity=0.351 Sum_probs=23.4
Q ss_pred CcccceeecccCCCCCcccccccChhcHHH
Q 012549 103 QEPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 103 ~~pi~~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
++-+.....||||| |+||-+..|++.+..
T Consensus 219 ~~d~a~iiyTSGTT-G~PKGV~lth~~~~~ 247 (660)
T PLN02430 219 PLDICTIMYTSGTS-GDPKGVVLTHEAVAT 247 (660)
T ss_pred cCceEEEEECCCCC-CCCCEEEeecHHHHH
Confidence 34455888999999 999999999886644
No 88
>PRK05691 peptide synthase; Validated
Probab=96.40 E-value=0.059 Score=72.13 Aligned_cols=40 Identities=18% Similarity=0.306 Sum_probs=28.7
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCceeEE
Q 012549 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWIG 353 (461)
Q Consensus 310 WP~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~~~~Y~aSEg~ig 353 (461)
.|.|+ .++.|| .....+++.+.+++++++ ..||.||+.+.
T Consensus 1387 ~~~lr---~~~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~ 1429 (4334)
T PRK05691 1387 CTSLR---RLFSGGEALPAELRNRVLQRLPQVQLH-NRYGPTETAIN 1429 (4334)
T ss_pred CCccc---EEEEeecCCCHHHHHHHHHhCCCcEEE-eCCCcChheee
Confidence 46788 555555 444556677777888888 99999998543
No 89
>PRK06087 short chain acyl-CoA synthetase; Reviewed
Probab=96.35 E-value=0.043 Score=59.10 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=21.6
Q ss_pred ccceeecccCCCCCcccccccChhcHH
Q 012549 105 PITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (461)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~~~ 131 (461)
-+.+...||||| |+||-+.+|+..+.
T Consensus 188 d~a~i~~TSGTT-G~PK~v~~t~~~l~ 213 (547)
T PRK06087 188 ELAAVLFTSGTE-GLPKGVMLTHNNIL 213 (547)
T ss_pred CeEEEEeCCCCC-CCCcEEEEecHHHH
Confidence 344778899999 99999999998654
No 90
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Probab=96.32 E-value=0.11 Score=56.85 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=22.1
Q ss_pred cCcccceeecccCCCCCcccccccChhcH
Q 012549 102 TQEPITKLSLSSGTTEGRQKYVPFTKHSS 130 (461)
Q Consensus 102 ~~~pi~~f~~TSGTT~G~~K~IP~T~~~~ 130 (461)
..+|. +...||||| |+||-+.-|...+
T Consensus 170 ~~dpl-~ilYTSGTT-G~PKgv~H~~gg~ 196 (528)
T COG0365 170 ADDPL-FLLYTSGTT-GKPKGIVHSHGGY 196 (528)
T ss_pred CCCeE-EEEeCCCCC-CCCceEEEeCchH
Confidence 44555 889999999 9999999888743
No 91
>PRK06188 acyl-CoA synthetase; Validated
Probab=96.28 E-value=0.032 Score=59.62 Aligned_cols=26 Identities=42% Similarity=0.419 Sum_probs=22.1
Q ss_pred cceeecccCCCCCcccccccChhcHHH
Q 012549 106 ITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 106 i~~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
+.+...||||| |.||-+..|+..+..
T Consensus 170 ~a~i~~TSGtT-G~pk~v~~s~~~l~~ 195 (524)
T PRK06188 170 IAGLAYTGGTT-GKPKGVMGTHRSIAT 195 (524)
T ss_pred eEEEEeCCCCC-CCCceeeeehHHHHH
Confidence 55788899999 999999999986544
No 92
>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria. LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence
Probab=96.20 E-value=0.089 Score=54.87 Aligned_cols=85 Identities=15% Similarity=0.098 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHH-hcCCChHHHHhhcCccCCCCCCCcChHHhhhcCCCcccccchHHHHHHhcCCCCCcccCcccceee
Q 012549 32 GEVQRETLRRILE-QNYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHADLEPYIQRIADGDTASLLTQEPITKLS 110 (461)
Q Consensus 32 ~~~Q~~~L~~iL~-~na~T~ygr~~~~~~~~~~f~~i~s~edFr~~VPl~tYed~~pyIeRi~~Ge~~~vl~~~pi~~f~ 110 (461)
++...+.++++.+ ++++++.+|++.. ..+.+ ..+++++| +|..--+-++.. ++.... .+.+....
T Consensus 30 ~~l~~~~~~~~~~~q~~~~~~Yr~~~~-~~~~~-~~v~~~~d----IP~lPi~~FK~~--~L~S~~------~e~~~~~~ 95 (365)
T PF04443_consen 30 EELFLALALELFRYQYEHNPPYRKYCD-ALGFD-EDVKDLED----IPFLPIRFFKEH--ELLSVP------EEEVEKVF 95 (365)
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHH-HcCCC-cccccHHH----CCcchHHHHhhc--eeeecC------hhhheeEE
Confidence 3445566666666 5899999999955 23333 34444444 565544444421 122211 33466789
Q ss_pred cccCCCCCcccccccChhcHH
Q 012549 111 LSSGTTEGRQKYVPFTKHSSQ 131 (461)
Q Consensus 111 ~TSGTT~G~~K~IP~T~~~~~ 131 (461)
.||||| |.+-.|...+....
T Consensus 96 tSSGTt-G~~S~i~~D~~t~~ 115 (365)
T PF04443_consen 96 TSSGTT-GQPSRIFRDRETAE 115 (365)
T ss_pred ECCCCC-CCCcEEEECHHHHH
Confidence 999999 75555666555443
No 93
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=96.00 E-value=0.11 Score=61.45 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=21.9
Q ss_pred cccceeecccCCCCCcccccccChhcH
Q 012549 104 EPITKLSLSSGTTEGRQKYVPFTKHSS 130 (461)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~~ 130 (461)
+-+.+...||||| |+||-+..|++.+
T Consensus 793 ~d~a~i~~TSGTT-G~PKgv~~sh~~~ 818 (1140)
T PRK06814 793 DDPAVILFTSGSE-GTPKGVVLSHRNL 818 (1140)
T ss_pred CCcEEEEECCCcc-CCCcEEEecHHHH
Confidence 3455888999999 9999999998865
No 94
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated
Probab=95.99 E-value=0.22 Score=52.98 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=23.2
Q ss_pred CcccceeecccCCCCCcccccccChhcHH
Q 012549 103 QEPITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (461)
Q Consensus 103 ~~pi~~f~~TSGTT~G~~K~IP~T~~~~~ 131 (461)
.+.+.+...||||| |+||-+..|...+.
T Consensus 172 ~~~~a~i~~TSGtT-G~PK~v~~t~~~l~ 199 (517)
T PRK08008 172 TDDTAEILFTSGTT-SRPKGVVITHYNLR 199 (517)
T ss_pred CCCeEEEEECCCCC-CCCcEEEEehHHHH
Confidence 34455888999999 99999999998764
No 95
>PTZ00216 acyl-CoA synthetase; Provisional
Probab=95.93 E-value=0.17 Score=56.82 Aligned_cols=29 Identities=31% Similarity=0.338 Sum_probs=23.5
Q ss_pred CcccceeecccCCCCCcccccccChhcHHH
Q 012549 103 QEPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 103 ~~pi~~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
++-+.+...||||| |+||-+..|++.+-.
T Consensus 263 ~~d~a~iiyTSGTT-G~PKGV~lth~nl~~ 291 (700)
T PTZ00216 263 NDDLALIMYTSGTT-GDPKGVMHTHGSLTA 291 (700)
T ss_pred cccEEEEEEeCCCC-CcCcEEEEEhHHHHH
Confidence 34455788899999 999999999987644
No 96
>PRK05620 long-chain-fatty-acid--CoA ligase; Validated
Probab=95.90 E-value=0.21 Score=54.27 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=22.4
Q ss_pred CcccceeecccCCCCCcccccccChhcH
Q 012549 103 QEPITKLSLSSGTTEGRQKYVPFTKHSS 130 (461)
Q Consensus 103 ~~pi~~f~~TSGTT~G~~K~IP~T~~~~ 130 (461)
++-+.++..||||| |+||-+-.|++.+
T Consensus 180 ~~~~a~i~~TSGTT-G~PKgv~~s~~~l 206 (576)
T PRK05620 180 ETTAAAICYSTGTT-GAPKGVVYSHRSL 206 (576)
T ss_pred ccceeEEEECCCCC-CCCceEEEEcHHH
Confidence 34456889999999 9999999988765
No 97
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Probab=95.83 E-value=0.21 Score=56.16 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=22.1
Q ss_pred cccceeecccCCCCCcccccccChhcHH
Q 012549 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (461)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~~~ 131 (461)
+-+.+...||||| |+||-+..|+..+-
T Consensus 365 ~d~a~i~~TSGTT-G~PKgv~~sh~~l~ 391 (718)
T PRK08043 365 EDAALILFTSGSE-GHPKGVVHSHKSLL 391 (718)
T ss_pred CCeEEEEECCCCC-CCCCEEEEcHHHHH
Confidence 3344788899999 99999999997653
No 98
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated
Probab=95.81 E-value=0.15 Score=54.87 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=22.2
Q ss_pred CcccceeecccCCCCCcccccccChhcH
Q 012549 103 QEPITKLSLSSGTTEGRQKYVPFTKHSS 130 (461)
Q Consensus 103 ~~pi~~f~~TSGTT~G~~K~IP~T~~~~ 130 (461)
++.+.+...||||| |.||-+.+|+..+
T Consensus 175 ~~~~~~i~~TSGTT-G~PK~v~~s~~~~ 201 (539)
T PRK07008 175 ENQASSLCYTSGTT-GNPKGALYSHRST 201 (539)
T ss_pred cccceEEEECCCCC-CCCcEEEEecHHH
Confidence 44455889999999 9999999998654
No 99
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated
Probab=95.60 E-value=0.33 Score=51.50 Aligned_cols=24 Identities=33% Similarity=0.253 Sum_probs=19.3
Q ss_pred cceeecccCCCCCcccccccChhcH
Q 012549 106 ITKLSLSSGTTEGRQKYVPFTKHSS 130 (461)
Q Consensus 106 i~~f~~TSGTT~G~~K~IP~T~~~~ 130 (461)
+.+...||||| |+||-+..+...+
T Consensus 142 ~a~i~~TSGtT-G~PK~v~~~~~~~ 165 (502)
T PRK08276 142 GADMLYSSGTT-GRPKGIKRPLPGL 165 (502)
T ss_pred ceEEEECCCCC-CCCceEEEccCCc
Confidence 45778899999 9999998776554
No 100
>PRK03584 acetoacetyl-CoA synthetase; Provisional
Probab=95.47 E-value=0.35 Score=53.67 Aligned_cols=24 Identities=29% Similarity=0.198 Sum_probs=20.1
Q ss_pred cceeecccCCCCCcccccccChhcH
Q 012549 106 ITKLSLSSGTTEGRQKYVPFTKHSS 130 (461)
Q Consensus 106 i~~f~~TSGTT~G~~K~IP~T~~~~ 130 (461)
+.+...||||| |+||-+..|+..+
T Consensus 265 ~a~ilyTSGTT-G~PKgV~~sh~~~ 288 (655)
T PRK03584 265 PLWILYSSGTT-GLPKCIVHGHGGI 288 (655)
T ss_pred cEEEEecCCCC-CCCceEEECccHH
Confidence 34788899999 9999999998743
No 101
>PRK07768 long-chain-fatty-acid--CoA ligase; Validated
Probab=95.34 E-value=0.51 Score=50.74 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=22.9
Q ss_pred CcccceeecccCCCCCcccccccChhcHH
Q 012549 103 QEPITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (461)
Q Consensus 103 ~~pi~~f~~TSGTT~G~~K~IP~T~~~~~ 131 (461)
++-+.+...||||| |+||-+..|++.+.
T Consensus 151 ~~~~a~i~~TSGtT-G~PKgv~~s~~~~~ 178 (545)
T PRK07768 151 EDDLALMQLTSGST-GSPKAVQITHGNLY 178 (545)
T ss_pred CCCEEEEEeCCCCC-CCCceEEEcHHHHH
Confidence 34455888999999 99999999998653
No 102
>PRK06018 putative acyl-CoA synthetase; Provisional
Probab=94.97 E-value=0.17 Score=54.47 Aligned_cols=36 Identities=19% Similarity=0.345 Sum_probs=25.9
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcee
Q 012549 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESW 351 (461)
Q Consensus 310 WP~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~~~~Y~aSEg~ 351 (461)
.|+++ .+.+|+ ...-++.+++ + +++++ ..||+||+.
T Consensus 293 ~~~lr---~~~~~G~~l~~~~~~~~~~-~-~~~~~-~~YG~tE~~ 331 (542)
T PRK06018 293 LPHLK---MVVCGGSAMPRSMIKAFED-M-GVEVR-HAWGMTEMS 331 (542)
T ss_pred cccce---EEEEcCCCCCHHHHHHHHH-h-CCCeE-eeecccccC
Confidence 36777 445444 4556677777 5 78988 999999983
No 103
>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=94.27 E-value=0.87 Score=49.58 Aligned_cols=125 Identities=14% Similarity=0.106 Sum_probs=63.2
Q ss_pred cHHHHHHHHHHhcccccCCccCcccCCCCCCceEEEEEcCC--hHHHHHHHHhHhCCCCcccCccccCceeEE-eeCCCC
Q 012549 283 KPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGS--MQHYLKKLRHYAGDLPLVSADYGSTESWIG-VNVDPS 359 (461)
Q Consensus 283 ~p~~A~~L~~~~~~~~~~~~~gi~~~lWP~L~~v~~~~~G~--~~~y~~~l~~~~~~vpi~~~~Y~aSEg~ig-i~~~~~ 359 (461)
+....+++|+..++ +|+ -+.+|+ ..+-.+++-..+=.+|+. -|||-||.+-| .-.+++
T Consensus 389 d~lVFkKIr~~lGG---------------~lR---~~LsGGapLS~dtQrF~nic~C~Pv~-qGYGLTEtca~~tv~e~~ 449 (678)
T KOG1180|consen 389 DALVFKKIRALLGG---------------NLR---YILSGGAPLSPDTQRFMNICFCCPVL-QGYGLTETCAAATVLEPE 449 (678)
T ss_pred HHHHHHHHHHHhCC---------------ceE---EEEeCCCCCCHHHHHHHHHhcccccc-ccccccchhcccEecChh
Confidence 44567777777554 566 445555 555555555544356998 99999998643 333433
Q ss_pred CC-CCCceeeeeCCceEEEEeecCccccCCCCCCCCCCCC---cc------cccCCCcCCCeEEEEEeccCceeccccCC
Q 012549 360 LP-PEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIED---EP------VPLSQVKLGQEYEIVLTSFTGKSFISISI 429 (461)
Q Consensus 360 ~~-~~~~~~~l~p~~~ffEFip~~~~~~~~~~~~~~~~~~---~~------l~l~Ele~G~~YelVvTt~~GLyRYriGD 429 (461)
+- -|.++-.+ ....+-.+..+|.+= ....+| ++ +.+.=.+--++=.-..|...|---+++||
T Consensus 450 d~~~g~vG~pl--~c~eiKLvdw~EgGY------~~~~~PPrGEI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TGD 521 (678)
T KOG1180|consen 450 DFSTGRVGAPL--PCCEIKLVDWEEGGY------FAKNKPPRGEILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTGD 521 (678)
T ss_pred hcccccccCCc--cceEEEEEEhhhcCc------cCCCCCCCceEEecCCccChhhhCChhhhhhhceecCCcEEEeccc
Confidence 31 12222211 234555555554321 111111 11 11111111111112223356766789999
Q ss_pred EEEec
Q 012549 430 KIPIS 434 (461)
Q Consensus 430 vV~v~ 434 (461)
+.+++
T Consensus 522 IGe~~ 526 (678)
T KOG1180|consen 522 IGEFH 526 (678)
T ss_pred cceec
Confidence 99998
No 104
>PRK07868 acyl-CoA synthetase; Validated
Probab=89.16 E-value=1.3 Score=52.16 Aligned_cols=37 Identities=5% Similarity=0.049 Sum_probs=26.2
Q ss_pred CCCceEEEEEcCC-hHHHHHHHHhHhCCCCcccCccccCcee
Q 012549 311 PNAKYVYSIMTGS-MQHYLKKLRHYAGDLPLVSADYGSTESW 351 (461)
Q Consensus 311 P~L~~v~~~~~G~-~~~y~~~l~~~~~~vpi~~~~Y~aSEg~ 351 (461)
+.++ .+++|+ .....+++++.+++++++ .+||.||+.
T Consensus 720 ~slr---~~~g~gl~~~l~~~~~~~~~~~~l~-~~YG~TE~~ 757 (994)
T PRK07868 720 HPVR---LFIGSGMPTGLWERVVEAFAPAHVV-EFFATTDGQ 757 (994)
T ss_pred CceE---EEecCCCCHHHHHHHHHHhCchhee-eeeeccccc
Confidence 4566 344555 444556777778778888 899999984
No 105
>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]
Probab=88.37 E-value=0.51 Score=51.43 Aligned_cols=28 Identities=32% Similarity=0.360 Sum_probs=20.6
Q ss_pred CcccCcccceeecccCCCCCcccccccChh
Q 012549 99 SLLTQEPITKLSLSSGTTEGRQKYVPFTKH 128 (461)
Q Consensus 99 ~vl~~~pi~~f~~TSGTT~G~~K~IP~T~~ 128 (461)
.+.+.+|. .|+.||||| |-||--=+|+.
T Consensus 238 ~~~~~s~~-lyIYTSGTT-GLPKaAvith~ 265 (649)
T KOG1179|consen 238 GLTFRSPL-LYIYTSGTT-GLPKAAVITHL 265 (649)
T ss_pred Ccccccee-EEEEcCCCC-CCCHHHHHHHH
Confidence 44556666 999999999 88886555544
No 106
>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]
Probab=88.27 E-value=0.98 Score=50.50 Aligned_cols=111 Identities=17% Similarity=0.134 Sum_probs=58.6
Q ss_pred CcCCCccHHHHHHHHHHHhcHHHHH-HHHHHHHHHhcC--CChHHHHhhcCccCCCCCCCcC---hHHhhhcCCCccccc
Q 012549 11 GYGNNYECDIIRWFEYISENAGEVQ-RETLRRILEQNY--DVEYLKKRLGDTKIQDMDACEM---ETLYTSLVPLASHAD 84 (461)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~Q-~~~L~~iL~~na--~T~ygr~~~~~~~~~~f~~i~s---~edFr~~VPl~tYed 84 (461)
+|.....++...-+.+...+..-+. .+.+..||+... .++.+|... -|.+..+ -..=...|++-+|++
T Consensus 163 lYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI------~~~~~~~~~~~~~~~~gv~v~S~~e 236 (691)
T KOG1256|consen 163 LYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAII------QLDEPSDELKEKAENNGVEVYSWDE 236 (691)
T ss_pred cccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEE------EecCCchhhhhhhhcCCeEEEEHHH
Confidence 4444444444444444333332223 444567777533 466655541 2333321 111222477888888
Q ss_pred chHHHHHHhcCCCCCc-c--cCcccceeecccCCCCCcccccccChhcHHH
Q 012549 85 LEPYIQRIADGDTASL-L--TQEPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 85 ~~pyIeRi~~Ge~~~v-l--~~~pi~~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
+..-=+ ++.-.. - .++-+.....||||| |.||=.=.|++.+-.
T Consensus 237 ~~~lG~----~~~~~~~~~p~p~d~atI~yTSGTT-G~PKGVMLTH~Niv~ 282 (691)
T KOG1256|consen 237 FEELGK----KNQRKPRVPPKPDDLATICYTSGTT-GNPKGVMLTHRNIVS 282 (691)
T ss_pred HHhhcc----cccCCCCCCCCccceEEEEEcCCCC-CCCceEEEeccceee
Confidence 764322 121111 1 233355678899999 999999888887654
No 107
>PRK13390 acyl-CoA synthetase; Provisional
Probab=87.32 E-value=4 Score=43.24 Aligned_cols=36 Identities=11% Similarity=0.168 Sum_probs=23.5
Q ss_pred CCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcee
Q 012549 311 PNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESW 351 (461)
Q Consensus 311 P~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~~~~Y~aSEg~ 351 (461)
++++ .+++|+ ...-.+.+++.+ +.+++ ..||.||+.
T Consensus 270 ~~l~---~v~~~g~~~~~~~~~~~~~~~-~~~~~-~~YG~tE~~ 308 (501)
T PRK13390 270 SSLR---AVIHAAAPCPVDVKHAMIDWL-GPIVY-EYYSSTEAH 308 (501)
T ss_pred hhhh---eEEEcCCCCCHHHHHHHHHhc-CCcee-eeecccccC
Confidence 4666 555555 334445566666 46777 899999983
No 108
>PRK13391 acyl-CoA synthetase; Provisional
Probab=86.24 E-value=3.4 Score=43.96 Aligned_cols=35 Identities=11% Similarity=0.166 Sum_probs=24.1
Q ss_pred CCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcee
Q 012549 312 NAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESW 351 (461)
Q Consensus 312 ~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~~~~Y~aSEg~ 351 (461)
+++ .+++|+ .....+.+++.++ .++. ..||+||+.
T Consensus 276 ~l~---~~~~gg~~~~~~~~~~~~~~~g-~~v~-~~YG~tE~~ 313 (511)
T PRK13391 276 SLE---VAIHAAAPCPPQVKEQMIDWWG-PIIH-EYYAATEGL 313 (511)
T ss_pred cee---EEEEccCCCCHHHHHHHHHHcC-Ccee-eeecccccc
Confidence 666 445554 4455567777774 5666 999999994
No 109
>PRK07798 acyl-CoA synthetase; Validated
Probab=85.91 E-value=4 Score=43.24 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=26.0
Q ss_pred CCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCce
Q 012549 311 PNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTES 350 (461)
Q Consensus 311 P~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~~~~Y~aSEg 350 (461)
++++ .+.+|+ .....+++++.++++++. ..||+||.
T Consensus 296 ~~l~---~i~~gG~~~~~~~~~~~~~~~~~~~~~-~~YG~tE~ 334 (533)
T PRK07798 296 SSLF---AIASGGALFSPSVKEALLELLPNVVLT-DSIGSSET 334 (533)
T ss_pred CceE---EEEECCCCCCHHHHHHHHHHcCCCeEE-eeeccccc
Confidence 4566 566665 444556677777788888 99999997
No 110
>PRK06178 acyl-CoA synthetase; Validated
Probab=81.69 E-value=7.2 Score=42.15 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=22.4
Q ss_pred cccceeecccCCCCCcccccccChhcHH
Q 012549 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (461)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~~~ 131 (461)
+-+.+...||||| |.||-+..|+..+-
T Consensus 209 ~~~a~i~~TSGTT-G~PK~v~~t~~~~~ 235 (567)
T PRK06178 209 DALAALNYTGGTT-GMPKGCEHTQRDMV 235 (567)
T ss_pred CCeEEEEeCCCCC-CCCceEEeccHHHH
Confidence 3455889999999 99999999988653
No 111
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family. Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
Probab=81.46 E-value=1.8 Score=45.33 Aligned_cols=42 Identities=21% Similarity=0.205 Sum_probs=29.1
Q ss_pred cchHHHHHHhcCCCCCcccCcccceeecccCCCCCcccccccChhcHHH
Q 012549 84 DLEPYIQRIADGDTASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 84 d~~pyIeRi~~Ge~~~vl~~~pi~~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
.+.+|+|=+.++.+ +...+...||||| |.||-+..|.+.+..
T Consensus 81 ~~~~~~~~~~~~~~------~~~~~i~~TSGTT-G~PKgV~~sh~~l~~ 122 (386)
T TIGR02372 81 RIGEWVDLIAHHST------PTARFTFATSGST-GTPKPVTHSWAALLS 122 (386)
T ss_pred cHHHHHHHHHhcCC------CCceEEEECCCCC-CCCceeEeeHHHHHH
Confidence 55666666655441 1233667899999 999999999886543
No 112
>PRK07769 long-chain-fatty-acid--CoA ligase; Validated
Probab=76.74 E-value=8.7 Score=42.37 Aligned_cols=27 Identities=26% Similarity=0.246 Sum_probs=22.1
Q ss_pred cccceeecccCCCCCcccccccChhcHH
Q 012549 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (461)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~~~ 131 (461)
+-+.+...||||| |+||-+..|++.+.
T Consensus 180 ~d~a~i~~TSGTT-G~PKgV~~sh~~l~ 206 (631)
T PRK07769 180 DTIAYLQYTSGST-RIPAGVQITHLNLP 206 (631)
T ss_pred CCeEEEEeCCCCC-CCCcEEEEcHHHHH
Confidence 3455888999999 99999999987653
No 113
>PLN03102 acyl-activating enzyme; Provisional
Probab=74.66 E-value=7 Score=42.69 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=20.8
Q ss_pred ccceeecccCCCCCcccccccChhcH
Q 012549 105 PITKLSLSSGTTEGRQKYVPFTKHSS 130 (461)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~~ 130 (461)
-+.+...||||| |.||-|..|...+
T Consensus 187 d~~~il~TSGTT-G~PK~v~~s~~~~ 211 (579)
T PLN03102 187 DPISLNYTSGTT-ADPKGVVISHRGA 211 (579)
T ss_pred CcEEEEeCCcCC-CCCCEEEEecHHH
Confidence 344788999999 9999999997753
No 114
>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated
Probab=73.63 E-value=9.6 Score=40.91 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=22.5
Q ss_pred cccceeecccCCCCCcccccccChhcHHH
Q 012549 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
+-+.+...||||| |+||-+..|++.+-.
T Consensus 152 ~d~a~i~~TSGTT-G~PKgV~~th~~~~~ 179 (525)
T PRK05851 152 GGPAVLQGTAGST-GTPRTAILSPGAVLS 179 (525)
T ss_pred CCeEEEEeCCCCC-CCCcEEEecHHHHHH
Confidence 3355888999999 999999999876543
No 115
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Probab=72.77 E-value=5.8 Score=42.03 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=21.5
Q ss_pred cccceeecccCCCCCcccccccChhcHH
Q 012549 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (461)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~~~ 131 (461)
+...+...||||| |.||-+..|++.+-
T Consensus 120 ~~~~~i~~TSGTT-G~PKgV~~t~~~l~ 146 (452)
T PRK07445 120 ETGWIMIPTGGSS-GQIRFAIHTWETLT 146 (452)
T ss_pred CCcEEEEeCCCCC-CCCcEEEechHHHH
Confidence 3444667799999 99999999987653
No 116
>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=72.16 E-value=2.9 Score=42.38 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=22.4
Q ss_pred ccceeecccCCCCCcccccccChhcHHH
Q 012549 105 PITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
-+.+...||||| |+||-+..|++.+..
T Consensus 36 d~a~il~TSGTT-G~PKgv~~s~~~l~~ 62 (358)
T PRK07824 36 DVALVVATSGTT-GTPKGAMLTAAALTA 62 (358)
T ss_pred CeEEEEeCCCCC-CCCCEEEecHHHHHH
Confidence 345889999999 999999999887643
No 117
>TIGR01923 menE O-succinylbenzoate-CoA ligase. This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.
Probab=70.21 E-value=12 Score=38.67 Aligned_cols=29 Identities=38% Similarity=0.535 Sum_probs=23.2
Q ss_pred CcccceeecccCCCCCcccccccChhcHHH
Q 012549 103 QEPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 103 ~~pi~~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
.+.+.++..||||| |.||.|+.|.+.+..
T Consensus 110 ~~~~~~i~~TSGtT-G~PK~v~~s~~~~~~ 138 (436)
T TIGR01923 110 MDQIATLMFTSGTT-GKPKAVPHTFRNHYA 138 (436)
T ss_pred cCceEEEEeCCCCC-CCCcEEEEehHHHHH
Confidence 34455888999999 999999999886543
No 118
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Probab=69.81 E-value=3.7 Score=43.51 Aligned_cols=35 Identities=29% Similarity=0.473 Sum_probs=21.8
Q ss_pred CCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcee
Q 012549 311 PNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESW 351 (461)
Q Consensus 311 P~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~~~~Y~aSEg~ 351 (461)
++|+ .++.|+ ...-.+++++ + ++++. ..||+||+.
T Consensus 230 ~~l~---~i~~gG~~l~~~~~~~~~~-~-~~~l~-~~YG~TE~~ 267 (452)
T PRK07445 230 AQFR---TILLGGAPAWPSLLEQARQ-L-QLRLA-PTYGMTETA 267 (452)
T ss_pred hcce---EEEECCccCCHHHHHHHHh-c-CCeEe-cCcchhhhc
Confidence 4677 555555 2333444444 3 67887 999999973
No 119
>PLN03051 acyl-activating enzyme; Provisional
Probab=68.67 E-value=18 Score=38.53 Aligned_cols=26 Identities=46% Similarity=0.705 Sum_probs=21.8
Q ss_pred cccceeecccCCCCCcccccccChhcH
Q 012549 104 EPITKLSLSSGTTEGRQKYVPFTKHSS 130 (461)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~~ 130 (461)
+-+.+...||||| |+||-+..|++.+
T Consensus 119 ~d~a~i~yTSGTT-G~PKgV~~sh~~~ 144 (499)
T PLN03051 119 ESVTNILFSSGTT-GEPKAIPWTHLSP 144 (499)
T ss_pred cceEEEEeCCCCC-CCCceEEEccchH
Confidence 3455888999999 9999999998864
No 120
>TIGR01923 menE O-succinylbenzoate-CoA ligase. This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.
Probab=68.10 E-value=4.2 Score=41.97 Aligned_cols=35 Identities=26% Similarity=0.482 Sum_probs=21.9
Q ss_pred CCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcee
Q 012549 311 PNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESW 351 (461)
Q Consensus 311 P~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~~~~Y~aSEg~ 351 (461)
++++ .+.+|+ ....++.+++ . ++++. ..||+||..
T Consensus 219 ~~l~---~~~~~G~~~~~~~~~~~~~-~-~~~~~-~~YG~tE~~ 256 (436)
T TIGR01923 219 ENLR---KILLGGSAIPAPLIEEAQQ-Y-GLPIY-LSYGMTETC 256 (436)
T ss_pred CceE---EEEECCCCCCHHHHHHHHH-h-CCcee-eEecCCccc
Confidence 5666 444444 3444444544 3 67888 899999973
No 121
>PRK05850 acyl-CoA synthetase; Validated
Probab=65.90 E-value=23 Score=38.39 Aligned_cols=26 Identities=19% Similarity=0.166 Sum_probs=21.7
Q ss_pred ccceeecccCCCCCcccccccChhcHH
Q 012549 105 PITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (461)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~~~ 131 (461)
-+.+...||||| |+||-+..|+..+-
T Consensus 161 d~a~i~~TSGTT-G~PKgV~~sh~~l~ 186 (578)
T PRK05850 161 STAYLQYTSGST-RTPAGVMVSHRNVI 186 (578)
T ss_pred CeEEEEeCCCCC-CCCceEEEeHHHHH
Confidence 345888999999 99999999987653
No 122
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=62.97 E-value=5.4 Score=41.78 Aligned_cols=29 Identities=24% Similarity=0.384 Sum_probs=23.2
Q ss_pred CcccceeecccCCCCCcccccccChhcHHH
Q 012549 103 QEPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 103 ~~pi~~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
++.+.+...||||| |+||-+..|++.+-.
T Consensus 134 ~~~~a~i~~TSGTT-G~PKgv~~s~~~~~~ 162 (458)
T PRK09029 134 PQRLATMTLTSGST-GLPKAAVHTAQAHLA 162 (458)
T ss_pred CCCeEEEEECCCCC-CCCCEEEEeHHHHHH
Confidence 33445889999999 999999999886543
No 123
>PRK08162 acyl-CoA synthetase; Validated
Probab=61.73 E-value=77 Score=33.88 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=19.5
Q ss_pred ceeecccCCCCCcccccccChhcH
Q 012549 107 TKLSLSSGTTEGRQKYVPFTKHSS 130 (461)
Q Consensus 107 ~~f~~TSGTT~G~~K~IP~T~~~~ 130 (461)
.+...||||| |+||-+.+|++.+
T Consensus 185 ~~i~~TSGTT-G~PKgv~~t~~~~ 207 (545)
T PRK08162 185 IALNYTSGTT-GNPKGVVYHHRGA 207 (545)
T ss_pred EEEEeCCCCC-CCCcEEEEecHHH
Confidence 3678899999 9999999998743
No 124
>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated
Probab=60.97 E-value=7.5 Score=41.76 Aligned_cols=29 Identities=14% Similarity=-0.043 Sum_probs=22.0
Q ss_pred CcCCCeEEEEEecc---Ccee---------ccccCCEEEec
Q 012549 406 VKLGQEYEIVLTSF---TGKS---------FISISIKIPIS 434 (461)
Q Consensus 406 le~G~~YelVvTt~---~GLy---------RYriGDvV~v~ 434 (461)
|..|+..||+|+.. .|.| -|++||+++..
T Consensus 367 ~~~g~~GEl~v~g~~~~~GY~~~~~~~~~~~~~TGDl~~~~ 407 (525)
T PRK05851 367 VAGREIGEIEIRGASMMSGYLGQAPIDPDDWFPTGDLGYLV 407 (525)
T ss_pred CCCCCeEEEEEecCchhhccccCCccCCCCceeccceEEEE
Confidence 67899999999763 2433 38999998764
No 125
>PRK12476 putative fatty-acid--CoA ligase; Provisional
Probab=59.17 E-value=25 Score=38.63 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=22.4
Q ss_pred cccceeecccCCCCCcccccccChhcHH
Q 012549 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (461)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~~~ 131 (461)
+-+.+...||||| |+||-+..|++.+-
T Consensus 193 ~d~a~i~yTSGTT-G~PKgV~~sh~~l~ 219 (612)
T PRK12476 193 DDVSHLQYTSGST-RPPVGVEITHRAVG 219 (612)
T ss_pred CceEEEEeCCCCC-CCCceEEeeHHHHH
Confidence 3455888999999 99999999988653
No 126
>PRK07769 long-chain-fatty-acid--CoA ligase; Validated
Probab=57.12 E-value=7.9 Score=42.66 Aligned_cols=37 Identities=22% Similarity=0.377 Sum_probs=22.3
Q ss_pred CCCceEEEEEcCC---hHHHHHHHHhHhC--C---CCcccCccccCcee
Q 012549 311 PNAKYVYSIMTGS---MQHYLKKLRHYAG--D---LPLVSADYGSTESW 351 (461)
Q Consensus 311 P~L~~v~~~~~G~---~~~y~~~l~~~~~--~---vpi~~~~Y~aSEg~ 351 (461)
++++ .+++|+ ...-.+++.+.|+ + .++. .+||.||+.
T Consensus 306 ~~lr---~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~-~~YG~TE~~ 350 (631)
T PRK07769 306 SNVK---GLLNGSEPVSPASMRKFNEAFAPYGLPPTAIK-PSYGMAEAT 350 (631)
T ss_pred hhee---eEEeccCCCCHHHHHHHHHHHhhcCCChhhcc-cccchhhhe
Confidence 4566 445555 3344555666553 2 3466 999999984
No 127
>PRK09192 acyl-CoA synthetase; Validated
Probab=55.37 E-value=40 Score=36.68 Aligned_cols=27 Identities=30% Similarity=0.241 Sum_probs=22.2
Q ss_pred ccceeecccCCCCCcccccccChhcHHH
Q 012549 105 PITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
-+.+...||||| |.||-+..|++.+..
T Consensus 177 ~~a~i~~TSGTT-G~PKgv~~sh~~~~~ 203 (579)
T PRK09192 177 DIAYLQYSSGST-RFPRGVIITHRALMA 203 (579)
T ss_pred CeEEEEecCCCC-CCCceEEeeHHHHHH
Confidence 344778899999 999999999886644
No 128
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=53.01 E-value=49 Score=36.48 Aligned_cols=55 Identities=22% Similarity=0.250 Sum_probs=38.3
Q ss_pred CCCCceEEEEEcCC--hHHHHHHHHhHhCCCCcccCccccCce--eEEeeCCCCC-CCCCcee
Q 012549 310 WPNAKYVYSIMTGS--MQHYLKKLRHYAGDLPLVSADYGSTES--WIGVNVDPSL-PPEDVTF 367 (461)
Q Consensus 310 WP~L~~v~~~~~G~--~~~y~~~l~~~~~~vpi~~~~Y~aSEg--~igi~~~~~~-~~~~~~~ 367 (461)
.+.++.|. ++|+ ...-.+++++.+|...+. .+||-||. .+++|.+... .++.++.
T Consensus 298 l~sl~~v~--~gga~~~~~~~~~~~~~l~~~~v~-q~YGmTE~~~~~~~~~~~~e~k~~svG~ 357 (537)
T KOG1176|consen 298 LSSLRSVL--SGGAPLSPATLEKVKERLPNVTVI-QGYGMTEAGGLITSNDWGPERKPGSVGR 357 (537)
T ss_pred CCccEEEE--ecCCCCCHHHHHHHHHhCCCceEE-EeeccccccCceeecCCCccCcccccCc
Confidence 45666333 4554 666778888889866777 99999999 5788888763 3444555
No 129
>PLN03051 acyl-activating enzyme; Provisional
Probab=52.60 E-value=7.5 Score=41.52 Aligned_cols=37 Identities=16% Similarity=0.134 Sum_probs=21.5
Q ss_pred CCCceEEEEEcCC---hHHHHHHHHhHhC-CCCcccCccccCcee
Q 012549 311 PNAKYVYSIMTGS---MQHYLKKLRHYAG-DLPLVSADYGSTESW 351 (461)
Q Consensus 311 P~L~~v~~~~~G~---~~~y~~~l~~~~~-~vpi~~~~Y~aSEg~ 351 (461)
+.|+ .+.+|+ .......+++..+ ++++. .+||.||+.
T Consensus 236 ~~Lr---~i~~gG~~~~~~~~~~~~~~~~~~~~~~-~~YG~TE~~ 276 (499)
T PLN03051 236 SKLR---VFASTGEASAVDDVLWLSSVRGYYKPVI-EYCGGTELA 276 (499)
T ss_pred hhhe---EEEecCCCCCHHHHHHHHHhccccceeE-eeecccccc
Confidence 5677 445444 2223344455332 36777 899999963
No 130
>PRK12476 putative fatty-acid--CoA ligase; Provisional
Probab=52.09 E-value=13 Score=40.85 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=20.6
Q ss_pred EEEcCC--hHHHHHHHHhHhC--CCC---cccCccccCcee
Q 012549 318 SIMTGS--MQHYLKKLRHYAG--DLP---LVSADYGSTESW 351 (461)
Q Consensus 318 ~~~~G~--~~~y~~~l~~~~~--~vp---i~~~~Y~aSEg~ 351 (461)
++.+|. ...-.+++++.++ ++| +. ..||.||+.
T Consensus 322 ~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~-~~YG~TE~~ 361 (612)
T PRK12476 322 LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFK-PSYGIAEAT 361 (612)
T ss_pred EEecccCCCHHHHHHHHHHHHhcCCCccccc-cccchhhhh
Confidence 444554 4445566666663 334 55 999999984
No 131
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.
Probab=50.97 E-value=31 Score=38.38 Aligned_cols=23 Identities=30% Similarity=0.284 Sum_probs=19.1
Q ss_pred cceeecccCCCCCcccccccChhc
Q 012549 106 ITKLSLSSGTTEGRQKYVPFTKHS 129 (461)
Q Consensus 106 i~~f~~TSGTT~G~~K~IP~T~~~ 129 (461)
+.+...||||| |+||-+..|+..
T Consensus 266 ~~~ilyTSGTT-G~PKgV~~sh~~ 288 (652)
T TIGR01217 266 PLWILFSSGTT-GLPKCIVHSAGG 288 (652)
T ss_pred CEEEEEcCCCC-CCCCeEEecccH
Confidence 34888899999 899999988764
No 132
>PLN03102 acyl-activating enzyme; Provisional
Probab=49.85 E-value=8.6 Score=42.00 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=16.9
Q ss_pred hHHHHHHHHhHhCCCCcccCccccCcee
Q 012549 324 MQHYLKKLRHYAGDLPLVSADYGSTESW 351 (461)
Q Consensus 324 ~~~y~~~l~~~~~~vpi~~~~Y~aSEg~ 351 (461)
.......+++ + +++++ .+||+||+.
T Consensus 313 ~~~~~~~~~~-~-g~~i~-~~YG~tE~~ 337 (579)
T PLN03102 313 PAALVKKVQR-L-GFQVM-HAYGLTEAT 337 (579)
T ss_pred CHHHHHHHHH-c-CCeEE-eecCccccC
Confidence 3444455544 4 56888 899999974
No 133
>PRK09192 acyl-CoA synthetase; Validated
Probab=48.99 E-value=12 Score=40.61 Aligned_cols=28 Identities=7% Similarity=-0.095 Sum_probs=20.0
Q ss_pred CcCCCeEEEEEecc---Ccee-------------ccccCCEEEe
Q 012549 406 VKLGQEYEIVLTSF---TGKS-------------FISISIKIPI 433 (461)
Q Consensus 406 le~G~~YelVvTt~---~GLy-------------RYriGDvV~v 433 (461)
+..|+..||+|+.. .|.| .|++||++.+
T Consensus 406 ~~~g~~Gel~i~g~~~~~gY~~~~~~~~~~~~dgw~~TGDlg~~ 449 (579)
T PRK09192 406 LPERVVGHICVRGPSLMSGYFRDEESQDVLAADGWLDTGDLGYL 449 (579)
T ss_pred CCCCCEEEEEecCCchhhhhcCCccccccccCCceeeccceeeE
Confidence 57788999999763 2333 4789997765
No 134
>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]
Probab=47.29 E-value=14 Score=39.90 Aligned_cols=88 Identities=23% Similarity=0.219 Sum_probs=47.3
Q ss_pred HHH--HHHHHHHHHh--cCCChHHHHhhcCccCCCCCCCcChHHhhhcCCCc---ccccc-----hHHHHHHhcCCCCCc
Q 012549 33 EVQ--RETLRRILEQ--NYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLA---SHADL-----EPYIQRIADGDTASL 100 (461)
Q Consensus 33 ~~Q--~~~L~~iL~~--na~T~ygr~~~~~~~~~~f~~i~s~edFr~~VPl~---tYed~-----~pyIeRi~~Ge~~~v 100 (461)
++| -++|++|.-. +++..=.|.+ .|...+++--+-..+|+- .|+|+ .+.++..+.=+ .-+
T Consensus 160 k~~ny~~~l~~icPEv~~~~~G~lkS~-------~lp~lthvi~~~ed~~~~Ga~~~sev~~~~s~~~~a~l~~~~-k~~ 231 (596)
T KOG1177|consen 160 KTQNYYETLLEICPEVMRGDPGQLKSE-------LLPELTHVILADEDHPLPGAFLLSEVLKAASKEERAKLADMS-KWL 231 (596)
T ss_pred hhchHHHHHHHhhHHhhcCCCcccccc-------ccccceEEEecCCCCcCCCceehHHHHHhcchHHHHHHHhhh-hhc
Confidence 355 6788888764 6666644444 454444321111123322 23322 12222222222 234
Q ss_pred ccCcccceeecccCCCCCcccccccChhcH
Q 012549 101 LTQEPITKLSLSSGTTEGRQKYVPFTKHSS 130 (461)
Q Consensus 101 l~~~pi~~f~~TSGTT~G~~K~IP~T~~~~ 130 (461)
.+.+++ -.+-||||| |.||-+-.|+.-+
T Consensus 232 ~pdd~~-niQFTSGTT-G~PKgatLsH~~~ 259 (596)
T KOG1177|consen 232 SPDDAV-NIQFTSGTT-GAPKGATLSHYNF 259 (596)
T ss_pred CCCCce-EEEeccCCC-CCCcceeeehhhh
Confidence 445555 889999999 9999999887643
No 135
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.
Probab=46.71 E-value=11 Score=41.98 Aligned_cols=36 Identities=11% Similarity=0.057 Sum_probs=21.6
Q ss_pred CCCceEEEEEcCC---hHHHHHHHHhHhC-CCCcccCccccCce
Q 012549 311 PNAKYVYSIMTGS---MQHYLKKLRHYAG-DLPLVSADYGSTES 350 (461)
Q Consensus 311 P~L~~v~~~~~G~---~~~y~~~l~~~~~-~vpi~~~~Y~aSEg 350 (461)
+.|+ .+.+|+ .....+.+++.++ ++++. ..||.||.
T Consensus 384 ~sLr---~i~~gGe~l~~~~~~~~~~~~~~~~~~~-~~yG~TE~ 423 (652)
T TIGR01217 384 SALQ---CVASTGSPLPPDGFRWVYDEIKADVWLA-SISGGTDI 423 (652)
T ss_pred hhee---EEEeecCCCCHHHHHHHHHHhCCCceEE-eccCHHHH
Confidence 4566 555555 3334445555554 35555 88999995
No 136
>PLN03052 acetate--CoA ligase; Provisional
Probab=45.69 E-value=15 Score=41.85 Aligned_cols=25 Identities=40% Similarity=0.659 Sum_probs=20.9
Q ss_pred ccceeecccCCCCCcccccccChhcH
Q 012549 105 PITKLSLSSGTTEGRQKYVPFTKHSS 130 (461)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~~ 130 (461)
-+.+...||||| |+||-|..|+..+
T Consensus 357 ~~a~IlyTSGTT-G~PKgVv~sh~~~ 381 (728)
T PLN03052 357 AFTNILFSSGTT-GEPKAIPWTQLTP 381 (728)
T ss_pred CcEEEEecCCCC-CCCceEEECchHH
Confidence 344888999999 9999999998754
No 137
>PRK06178 acyl-CoA synthetase; Validated
Probab=45.37 E-value=16 Score=39.50 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=18.7
Q ss_pred hHHHHHHHHhHhCCCCcccCccccCcee
Q 012549 324 MQHYLKKLRHYAGDLPLVSADYGSTESW 351 (461)
Q Consensus 324 ~~~y~~~l~~~~~~vpi~~~~Y~aSEg~ 351 (461)
.....+.+++.+|. ++....||.||..
T Consensus 340 ~~~~~~~~~~~~g~-~~~~~~YG~tE~~ 366 (567)
T PRK06178 340 NPDYRQRWRALTGS-VLAEAAWGMTETH 366 (567)
T ss_pred CHHHHHHHHHHhCC-ccccccccccccc
Confidence 45566677777754 5554689999973
No 138
>PLN02479 acetate-CoA ligase
Probab=44.98 E-value=11 Score=40.84 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=19.4
Q ss_pred eeecccCCCCCcccccccChhcH
Q 012549 108 KLSLSSGTTEGRQKYVPFTKHSS 130 (461)
Q Consensus 108 ~f~~TSGTT~G~~K~IP~T~~~~ 130 (461)
++..||||| |.||-+.+|.+.+
T Consensus 199 ~i~yTSGTT-G~PKgV~~sh~~~ 220 (567)
T PLN02479 199 ALGYTSGTT-ASPKGVVLHHRGA 220 (567)
T ss_pred EEEECCCCC-CCCcEEEeccHHH
Confidence 688999999 9999999997754
No 139
>PRK07798 acyl-CoA synthetase; Validated
Probab=43.62 E-value=11 Score=39.90 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=20.0
Q ss_pred eeecccCCCCCcccccccChhcHH
Q 012549 108 KLSLSSGTTEGRQKYVPFTKHSSQ 131 (461)
Q Consensus 108 ~f~~TSGTT~G~~K~IP~T~~~~~ 131 (461)
+...||||| |.||-+.+|++.+.
T Consensus 167 ~i~~TSGTT-G~PK~v~~s~~~~~ 189 (533)
T PRK07798 167 YLLYTGGTT-GMPKGVMWRQEDIF 189 (533)
T ss_pred EEEECCCCC-CCCcEEEEecHHHH
Confidence 678899999 99999999998653
No 140
>PRK05850 acyl-CoA synthetase; Validated
Probab=41.58 E-value=13 Score=40.18 Aligned_cols=38 Identities=21% Similarity=0.305 Sum_probs=23.7
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhC-----CCCcccCccccCcee
Q 012549 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAG-----DLPLVSADYGSTESW 351 (461)
Q Consensus 310 WP~L~~v~~~~~G~---~~~y~~~l~~~~~-----~vpi~~~~Y~aSEg~ 351 (461)
+++++ ++.+|+ .....+++.+.++ +.+++ ..||.||+.
T Consensus 287 ~~~lr---~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~YG~tE~~ 332 (578)
T PRK05850 287 LGGVL---GIISGSERVHPATLKRFADRFAPFNLRETAIR-PSYGLAEAT 332 (578)
T ss_pred hhhhe---eEEECcCCCCHHHHHHHHHHHHhcCcCccccc-Cccchhhhh
Confidence 35566 666666 3444555555553 34566 899999984
No 141
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=39.03 E-value=76 Score=33.12 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=21.4
Q ss_pred CCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcee
Q 012549 312 NAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESW 351 (461)
Q Consensus 312 ~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~~~~Y~aSEg~ 351 (461)
.++ .+++|+ .....+.+++ + +++++ ..||+||+.
T Consensus 241 ~l~---~i~~gG~~~~~~~~~~~~~-~-g~~~~-~~YG~tE~~ 277 (458)
T PRK09029 241 SLK---AVLLGGAAIPVELTEQAEQ-Q-GIRCW-CGYGLTEMA 277 (458)
T ss_pred cce---EEEECCCCCCHHHHHHHHH-c-CCcEe-ccccccccC
Confidence 455 455555 3333444544 3 67888 999999984
No 142
>PRK08162 acyl-CoA synthetase; Validated
Probab=35.37 E-value=18 Score=38.81 Aligned_cols=30 Identities=23% Similarity=0.434 Sum_probs=19.4
Q ss_pred EEEcCC--hHHHHHHHHhHhCCCCcccCccccCce
Q 012549 318 SIMTGS--MQHYLKKLRHYAGDLPLVSADYGSTES 350 (461)
Q Consensus 318 ~~~~G~--~~~y~~~l~~~~~~vpi~~~~Y~aSEg 350 (461)
++.+|+ .....+.+++ + +++++ ..||+||+
T Consensus 301 ~~~~g~~~~~~~~~~~~~-~-~~~~~-~~YG~tE~ 332 (545)
T PRK08162 301 AMVAGAAPPAAVIAKMEE-I-GFDLT-HVYGLTET 332 (545)
T ss_pred EEECCCCCCHHHHHHHHH-h-CCcee-eccccccc
Confidence 445554 3444444544 3 67888 99999997
No 143
>PLN03052 acetate--CoA ligase; Provisional
Probab=34.77 E-value=1.2e+02 Score=34.55 Aligned_cols=38 Identities=21% Similarity=0.244 Sum_probs=22.1
Q ss_pred CCCCceEEEEEcCCh--H-HHHHHHHhHhCCCCcccCccccCcee
Q 012549 310 WPNAKYVYSIMTGSM--Q-HYLKKLRHYAGDLPLVSADYGSTESW 351 (461)
Q Consensus 310 WP~L~~v~~~~~G~~--~-~y~~~l~~~~~~vpi~~~~Y~aSEg~ 351 (461)
++.|+ ++.+|+. . .-...+.+.++..|+. ..||.||+.
T Consensus 470 lssLr---~i~s~Ge~l~~~~~~~~~~~~~~~~i~-~~yG~TE~~ 510 (728)
T PLN03052 470 WSSIR---CFGSTGEASSVDDYLWLMSRAGYKPII-EYCGGTELG 510 (728)
T ss_pred hhhee---EEEecCCCCCHHHHHHHHHhcCCCCeE-eeccChhhC
Confidence 35677 5555552 1 1123344445546776 999999974
No 144
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=30.64 E-value=38 Score=27.58 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=15.2
Q ss_pred cCCCeEEEEEeccCc--eeccccC
Q 012549 407 KLGQEYEIVLTSFTG--KSFISIS 428 (461)
Q Consensus 407 e~G~~YelVvTt~~G--LyRYriG 428 (461)
-.||.|+++|.+..| +|||.=|
T Consensus 21 ~sgq~~D~~v~d~~g~~vwrwS~~ 44 (82)
T PF12690_consen 21 PSGQRYDFVVKDKEGKEVWRWSDG 44 (82)
T ss_dssp SSS--EEEEEE-TT--EEEETTTT
T ss_pred CCCCEEEEEEECCCCCEEEEecCC
Confidence 579999999999999 9998743
No 145
>cd05830 Sortase_D_5 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-5 represented by Streptomyces avermitilis SAV4337. Subfamily-5 sortases recognize a nonstandard sorting signal (LAXTG) and have replaced Sortase A in some gram-postive bacteria. They may play a housekeeping role in the cell.
Probab=29.25 E-value=44 Score=29.65 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=26.2
Q ss_pred ccCCCcCCCeEEEEEeccCceeccccCCEEEec
Q 012549 402 PLSQVKLGQEYEIVLTSFTGKSFISISIKIPIS 434 (461)
Q Consensus 402 ~l~Ele~G~~YelVvTt~~GLyRYriGDvV~v~ 434 (461)
.|.+|+.|. +|.|++..|-|+|++=++..+.
T Consensus 62 ~L~~l~~Gd--~i~v~~~~~~~~Y~V~~~~~v~ 92 (137)
T cd05830 62 DLDKLRPGD--KIVVETADGWYTYVVRSSEIVL 92 (137)
T ss_pred cHhhCCCCC--EEEEEECCeEEEEEEeEEEEEC
Confidence 467789998 8888999999999999986554
No 146
>cd04473 S1_RecJ_like S1_RecJ_like: The S1 domain of the archaea-specific RecJ-like exonuclease. The function of this family is not fully understood. In Escherichia coli, RecJ degrades single-stranded DNA in the 5'-3' direction and participates in homologous recombination and mismatch repair.
Probab=28.83 E-value=77 Score=24.96 Aligned_cols=36 Identities=8% Similarity=0.203 Sum_probs=24.4
Q ss_pred cccccCCCcCCCeEEEEEec-------------cCcee-------ccccCCEEEec
Q 012549 399 EPVPLSQVKLGQEYEIVLTS-------------FTGKS-------FISISIKIPIS 434 (461)
Q Consensus 399 ~~l~l~Ele~G~~YelVvTt-------------~~GLy-------RYriGDvV~v~ 434 (461)
..+.+.+++.|+.|+-.|+. ..||. +|++||.+++.
T Consensus 7 ~~~~~~~~~~G~~~~g~V~~i~~~G~fV~l~~~~~Glv~~se~~~~~~iGd~v~v~ 62 (77)
T cd04473 7 PACTMEDLEVGKLYKGKVNGVAKYGVFVDLNDHVRGLIHRSNLLRDYEVGDEVIVQ 62 (77)
T ss_pred cccchhhCCCCCEEEEEEEeEecceEEEEECCCcEEEEEchhccCcCCCCCEEEEE
Confidence 34566778889888877763 22333 47888888764
No 147
>cd05829 Sortase_E Sortase E (SrtE) is a membrane transpeptidase found in gram-positive bacteria that cleaves surface proteins at a cell sorting motif and catalyzes a transpeptidation reaction in which the surface protein substrate is covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. The function of Sortase E is unknown. In two different sortase families, the N-terminus either functions as both a signal peptide for secretion and a stop-transfer signal for membrane anchoring, or it contains a signal peptide only and the C-terminus serves as a membrane anchor. Most gram-positive bacteria contain more than one sortase and it is thought that the different sortases anchor different surface protein classes. The sortase domain is a modified beta-barrel flanked by two (SrtA) or three (SrtB) short alpha-helices.
Probab=26.95 E-value=56 Score=29.32 Aligned_cols=31 Identities=10% Similarity=0.131 Sum_probs=24.5
Q ss_pred ccCCCcCCCeEEEEEeccC-ceeccccCCEEEec
Q 012549 402 PLSQVKLGQEYEIVLTSFT-GKSFISISIKIPIS 434 (461)
Q Consensus 402 ~l~Ele~G~~YelVvTt~~-GLyRYriGDvV~v~ 434 (461)
.|++|++|. +|.|++.. +-|+|++-++..+.
T Consensus 69 ~L~~l~~GD--~I~v~~~~g~~~~Y~V~~~~~v~ 100 (144)
T cd05829 69 RLGDLRKGD--KVEVTRADGQTATFRVDRVEVYP 100 (144)
T ss_pred chhcCCCCC--EEEEEECCCCEEEEEEeEEEEEC
Confidence 467899998 57778844 48999999986665
No 148
>cd06166 Sortase_D_5 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-5, represented by Clostridium perfringens CPE2315. Subfamily-5 sortases recognize a nonstandard sorting signal (LAXTG) and have replaced Sortase A in some gram-postive bacteria. They may play a housekeeping role in the cell.
Probab=26.32 E-value=49 Score=28.84 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=27.2
Q ss_pred ccccCCCcCCCeEEEEEeccCceeccccCCEEEec
Q 012549 400 PVPLSQVKLGQEYEIVLTSFTGKSFISISIKIPIS 434 (461)
Q Consensus 400 ~l~l~Ele~G~~YelVvTt~~GLyRYriGDvV~v~ 434 (461)
--.|++|++|+ +|.|++..+-|+|++=++-.+.
T Consensus 59 F~~L~~l~~Gd--~v~v~~~~~~~~Y~V~~~~~v~ 91 (126)
T cd06166 59 FNRLDEVEKGD--EIKVTTKNGTYKYKITSIFVVE 91 (126)
T ss_pred cCChHHCCCCC--EEEEEECCEEEEEEEEEEEEEC
Confidence 34678899997 4778888999999998887776
No 149
>cd05828 Sortase_D_4 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-4. These sortases recognize a unique sorting signal (LPXTA) and they constitute a specialized sorting pathway found in bacilli. Their substrates are predicted to be predominantly enzymes such as 5'-nucleotidases, glycosyl hydrolase, and subtilase.
Probab=26.18 E-value=59 Score=28.35 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=26.3
Q ss_pred ccCCCcCCCeEEEEEeccCceeccccCCEEEecc
Q 012549 402 PLSQVKLGQEYEIVLTSFTGKSFISISIKIPISM 435 (461)
Q Consensus 402 ~l~Ele~G~~YelVvTt~~GLyRYriGDvV~v~g 435 (461)
.|++|+.|+ +|.|++..+-|+|++-++-.+.-
T Consensus 58 ~L~~l~~Gd--~i~v~~~~~~~~Y~V~~~~~v~~ 89 (127)
T cd05828 58 FLGELEPGD--IITLQTLGGTYTYRVTSTRIVDA 89 (127)
T ss_pred ChhcCCCCC--EEEEEECCEEEEEEEeeEEEECc
Confidence 456789998 47888888999999999987773
No 150
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=26.15 E-value=38 Score=37.33 Aligned_cols=24 Identities=33% Similarity=0.346 Sum_probs=20.8
Q ss_pred cceeecccCCCCCcccccccChhcH
Q 012549 106 ITKLSLSSGTTEGRQKYVPFTKHSS 130 (461)
Q Consensus 106 i~~f~~TSGTT~G~~K~IP~T~~~~ 130 (461)
+.....||||| |.||-++.|++.+
T Consensus 186 ~~~il~SSGTT-g~PKgV~lsHr~~ 209 (537)
T KOG1176|consen 186 TAAILYSSGTT-GLPKGVVLSHRNL 209 (537)
T ss_pred eEEEecCCCCC-CCCceEEEecHHH
Confidence 44888999999 9999999999844
No 151
>PRK13390 acyl-CoA synthetase; Provisional
Probab=26.14 E-value=33 Score=36.27 Aligned_cols=19 Identities=37% Similarity=0.302 Sum_probs=15.9
Q ss_pred ceeecccCCCCCcccccccC
Q 012549 107 TKLSLSSGTTEGRQKYVPFT 126 (461)
Q Consensus 107 ~~f~~TSGTT~G~~K~IP~T 126 (461)
.+...||||| |.||-+..+
T Consensus 151 a~i~~TSGTT-G~PKgV~~~ 169 (501)
T PRK13390 151 AVMLYSSGTT-GFPKGIQPD 169 (501)
T ss_pred EEEEeCCCCC-CCCCEEEee
Confidence 4778899999 999998753
No 152
>COG2026 RelE Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]
Probab=24.69 E-value=41 Score=27.77 Aligned_cols=20 Identities=15% Similarity=0.037 Sum_probs=15.4
Q ss_pred EEEEEeccCceeccccCCEE
Q 012549 412 YEIVLTSFTGKSFISISIKI 431 (461)
Q Consensus 412 YelVvTt~~GLyRYriGDvV 431 (461)
+-...-..+|+||+|+||-.
T Consensus 43 ~k~~~~~~~~~~R~RiG~YR 62 (90)
T COG2026 43 GKKLRKGLSGKYRLRIGDYR 62 (90)
T ss_pred ceecccCCCCeEEEEecCEE
Confidence 45556678899999999943
No 153
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=24.52 E-value=75 Score=25.65 Aligned_cols=28 Identities=32% Similarity=0.376 Sum_probs=23.8
Q ss_pred cCCCcCCCeEEEEEeccCceeccccCCEEEe
Q 012549 403 LSQVKLGQEYEIVLTSFTGKSFISISIKIPI 433 (461)
Q Consensus 403 l~Ele~G~~YelVvTt~~GLyRYriGDvV~v 433 (461)
+.+++.|++--|.+.... .++.||++++
T Consensus 57 v~~a~~G~ecgi~l~~~~---d~~~Gdvi~~ 84 (84)
T cd03692 57 VKEVKKGYECGITLENFN---DIKVGDIIEA 84 (84)
T ss_pred cCEECCCCEEEEEEeCcc---cCCCCCEEEC
Confidence 457899999999997777 7778999985
No 154
>PF00659 POLO_box: POLO box duplicated region; InterPro: IPR000959 A subgroup of serine/threonine protein kinases, Polo or Polo-like kinases play multiple roles during the cell cycle. Polo kinases are required at several key points through mitosis, starting from control of the G2/M transition through phosphorylation of Cdc25C and mitotic cyclins. Polo kinases are characterised by an amino terminal catalytic domain, and a carboxy terminal non-catalytic domain consisting of three blocks of conserved sequences known as polo boxes which form one single functional domain []. The domain is named after its founding member encoded by the polo gene of Drosophila melanogaster []. This domain of around 70 amino acids has been found in species ranging from yeast to mammals. Polo boxes appear to mediate interaction with multiple proteins through protein:protein interactions; some but not all of these proteins are substrates for the kinase domain of the molecule []. The crystal structure of the polo domain of the murine protein, Sak, is dimeric, consisting of two alpha-helices and two six-stranded beta-sheets []. The topology of one polypeptide subunit of the dimer consists of, from its N- to C terminus, an extended strand segment, five beta-strands, one alpha-helix (A) and a C-terminal beta-strand. Beta-strands from one subunit form a contiguous antiparallel beta-sheet with beta-strands from the second subunit. The two beta-sheets pack with a crossing angle of 110 degrees, orienting the hydrophobic surfaces inward and the hydrophilic surfaces outward. Helix A, which is colinear with beta-strand 6 of the same polypeptide, buries a large portion of the non-overlapping hydrophobic beta-sheet surfaces. Interactions involving helices A comprise a majority of the hydrophobic core structure and also the dimer interface. Point mutations in the Polo box of the budding yeast Cdc5 protein abolish the ability of overexpressed Cdc5 to interact with the spindle poles and to organise cytokinetic structures [].; GO: 0005515 protein binding; PDB: 1MBY_B 3P37_A 3MHN_A 1Q4K_A 3HIK_A 3Q1I_A 3P35_A 3MHQ_A 1UMW_B 3MQ8_B ....
Probab=24.48 E-value=1.1e+02 Score=23.54 Aligned_cols=35 Identities=14% Similarity=0.216 Sum_probs=27.8
Q ss_pred CccccCceeEEeeCCCCCCCCCceeeeeCCceEEEEeecC
Q 012549 343 ADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIH 382 (461)
Q Consensus 343 ~~Y~aSEg~igi~~~~~~~~~~~~~~l~p~~~ffEFip~~ 382 (461)
-+|-=|.|.++|+..++. -+++.|+...++||+.+
T Consensus 7 i~~~LSng~vqv~FnD~t-----kivl~~~~~~v~yi~~~ 41 (68)
T PF00659_consen 7 IGYQLSNGTVQVNFNDHT-----KIVLSPDGRLVTYIDRD 41 (68)
T ss_dssp EEEEETTSEEEEEETTS------EEEEETTCCEEEEE-TT
T ss_pred EEEEEeCCCEEEEEeCCC-----EEEECCCCCEEEEECCC
Confidence 456778999999988776 48899999999999954
No 155
>TIGR01076 sortase_fam LPXTG-site transpeptidase (sortase) family protein. of an LPXTG motif to the cell wall. It also includes a protein required for correct assembly of an LPXTG-containing fimbrial protein, a set of homologous proteins from Streptococcus pneumoniae, in which LPXTG proteins are common. However, related proteins are found in Bacillus subtilis and Methanobacterium thermoautotrophicum, in which LPXTG-mediated cell wall attachment is not known.
Probab=22.15 E-value=66 Score=28.44 Aligned_cols=31 Identities=13% Similarity=0.082 Sum_probs=24.6
Q ss_pred ccCCCcCCCeEEEEEeccCceeccccCCEEEec
Q 012549 402 PLSQVKLGQEYEIVLTSFTGKSFISISIKIPIS 434 (461)
Q Consensus 402 ~l~Ele~G~~YelVvTt~~GLyRYriGDvV~v~ 434 (461)
.|.+|+.|+. |.|++..+-|+|++=++-.+.
T Consensus 60 ~L~~l~~GD~--i~v~~~~~~~~Y~V~~~~~v~ 90 (136)
T TIGR01076 60 NLDKLKKGDM--LYLHVGNEVLTYQVTSTKIVE 90 (136)
T ss_pred CHHHCCCCCE--EEEEECCcEEEEEEEEEEEEC
Confidence 5677899984 677888999999997766554
No 156
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=22.15 E-value=1.5e+02 Score=28.65 Aligned_cols=68 Identities=7% Similarity=0.132 Sum_probs=49.3
Q ss_pred HHHHHHHHhcHHHHHHHHHHH------------HHHhcCCChHHHHhhcCccCCCCCCCcC-hHHhhhcCCCcccccchH
Q 012549 21 IRWFEYISENAGEVQRETLRR------------ILEQNYDVEYLKKRLGDTKIQDMDACEM-ETLYTSLVPLASHADLEP 87 (461)
Q Consensus 21 ~~~~~~~~~~~~~~Q~~~L~~------------iL~~na~T~ygr~~~~~~~~~~f~~i~s-~edFr~~VPl~tYed~~p 87 (461)
.++-+..+.+.++.|++.|.. ||++..+++=.+.+ .|+.+++ .+-|.+.--+.+.+|=+.
T Consensus 98 ~~r~~~~L~kLra~~rk~l~~LK~e~~y~aT~~ii~ky~e~~~~~~~-------~l~N~k~~k~~~~~~s~~~~~~~~~~ 170 (251)
T COG5415 98 NNRRLRKLAKLRAIHRKKLEKLKEETHYNATSSIIQKYSEELNAKYQ-------ELNNLKTEKEKFKKESHVKKKEDSDA 170 (251)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccchhHHHH-------HHhhHHHHhhcccccccccCcccchH
Confidence 445555667777788777753 56666666666666 6777765 567888888889999999
Q ss_pred HHHHHhcC
Q 012549 88 YIQRIADG 95 (461)
Q Consensus 88 yIeRi~~G 95 (461)
|.|++.+|
T Consensus 171 w~D~V~~v 178 (251)
T COG5415 171 WFDKVISV 178 (251)
T ss_pred HHHHHHHH
Confidence 99999753
No 157
>PF14031 D-ser_dehydrat: Putative serine dehydratase domain; PDB: 3LLX_A 3ANV_A 3AWO_A 3AWN_A 3ANU_A 3GWQ_A.
Probab=22.07 E-value=41 Score=28.05 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=17.3
Q ss_pred EeccCceeccccCCEEEecccccCCCceeh
Q 012549 416 LTSFTGKSFISISIKIPISMNRSFSCSILY 445 (461)
Q Consensus 416 vTt~~GLyRYriGDvV~v~g~~~~~cp~~~ 445 (461)
|+...|.-++++||+|++.=. | .||++-
T Consensus 58 l~~~~~~~~~~vGd~v~iiP~-H-~C~t~n 85 (94)
T PF14031_consen 58 LRLPDGADRLKVGDKVEIIPN-H-CCPTVN 85 (94)
T ss_dssp EE-STTGCGT-TT-EEEEEES-S-HHHHHT
T ss_pred EECCCCCCCCCCCCEEEEECC-c-cchhhh
Confidence 344444557899999998842 4 898864
No 158
>TIGR03784 marine_sortase sortase, marine proteobacterial type. Members of this protein family are sortase enzymes, cysteine transpeptidases involved in protein sorting activities. Members of this family tend to be found in proteobacteria, rather than in Gram-positive bacteria where sortases attach proteins to the Gram-positive cell wall or participate in pilin cross-linking. Many species with this sortase appear to contain a signal target sequence, a protein with a Vault protein inter-alpha-trypsin domain (pfam08487) and a von Willebrand factor type A domain (pfam00092), encoded by an adjacent gene. These sortases are designated subfamily 6 according to Comfort and Clubb (2004).
Probab=21.99 E-value=81 Score=29.47 Aligned_cols=30 Identities=17% Similarity=0.232 Sum_probs=23.9
Q ss_pred cCCCcCCCeEEEEEeccCc-eeccccCCEEEec
Q 012549 403 LSQVKLGQEYEIVLTSFTG-KSFISISIKIPIS 434 (461)
Q Consensus 403 l~Ele~G~~YelVvTt~~G-LyRYriGDvV~v~ 434 (461)
|++|++|+ +|+|++..| .++|++-++-.|.
T Consensus 106 L~~L~~GD--~I~v~~~~g~~~~Y~V~~~~iV~ 136 (174)
T TIGR03784 106 LQELRPGD--VIRLQTPDGQWQSYQVTATRVVD 136 (174)
T ss_pred hhhCCCCC--EEEEEECCCeEEEEEEeEEEEEC
Confidence 56789998 678888888 5689998886655
No 159
>PF09629 YorP: YorP protein; InterPro: IPR018591 This entry is represented by Bacteriophage SP-beta, YorP. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. YorP is a 71 residue protein. The structure is of an alpha helix between two of five beta strands. The function is unknown. ; PDB: 2HEQ_A.
Probab=21.68 E-value=63 Score=24.99 Aligned_cols=23 Identities=13% Similarity=0.312 Sum_probs=14.2
Q ss_pred eeccccCCEEEecccccCCCcee
Q 012549 422 KSFISISIKIPISMNRSFSCSIL 444 (461)
Q Consensus 422 LyRYriGDvV~v~g~~~~~cp~~ 444 (461)
+|-|.+||-|++-..--++||-+
T Consensus 4 yWsY~~~~~VeIN~NAkyg~P~~ 26 (71)
T PF09629_consen 4 YWSYPLGLEVEINSNAKYGCPHH 26 (71)
T ss_dssp S--S-TT-EEEE-TT-TTTSTT-
T ss_pred ccccCCCCEEEEcCcccccCccc
Confidence 68999999999997777899964
No 160
>cd04866 LigD_Pol_like_3 LigD_Pol_like_3: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 3. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated repair DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=21.02 E-value=78 Score=30.92 Aligned_cols=49 Identities=24% Similarity=0.415 Sum_probs=31.3
Q ss_pred cccCcccceeecccCCCCCcccccccC-hhc-HHHHHHHHHHHHHHHHhcCC
Q 012549 100 LLTQEPITKLSLSSGTTEGRQKYVPFT-KHS-SQTTLQIFRLAAAYRSRVYP 149 (461)
Q Consensus 100 vl~~~pi~~f~~TSGTT~G~~K~IP~T-~~~-~~~~~~~~~~~~~~~~~~~p 149 (461)
+|-.--+..|.+|||++ |=.-++|.. .+. .++...+...++..+.+..|
T Consensus 121 ~L~~lgL~~f~KTSG~k-GlHV~vPl~~~~~~~~~~r~fa~~iA~~l~~~~P 171 (223)
T cd04866 121 ILDALGLTSFVKTSGNK-GLQVYIPLPDNKFTYDETRLFTEFIAEYLCQQFP 171 (223)
T ss_pred HHHHcCCccceEccCCC-eEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHCc
Confidence 33344567999999999 899999999 443 33333333333455555555
No 161
>TIGR02778 ligD_pol DNA polymerase LigD, polymerase domain. DNA repair of double-stranded breaks by non-homologous end joining (NHEJ) is accomplished by a two-protein system that is present in a minority of prokaryotes. One component is the Ku protein (see TIGR02772), which binds DNA ends. The other is a DNA ligase, a protein that is a multidomain polypeptide in most of those bacteria that have NHEJ, a permuted polypeptide in Mycobacterium tuberculosis and a few other species, and the product of tandem genes in some other bacteria. This model represents the polymerase domain.
Probab=20.69 E-value=71 Score=31.61 Aligned_cols=49 Identities=22% Similarity=0.307 Sum_probs=32.8
Q ss_pred cccCcccceeecccCCCCCcccccccChhcH-HHHHHHHHHHHHHHHhcCC
Q 012549 100 LLTQEPITKLSLSSGTTEGRQKYVPFTKHSS-QTTLQIFRLAAAYRSRVYP 149 (461)
Q Consensus 100 vl~~~pi~~f~~TSGTT~G~~K~IP~T~~~~-~~~~~~~~~~~~~~~~~~p 149 (461)
+|..--+..|.+|||++ |=.-++|...+.- ++...+...++..+.+..|
T Consensus 142 ~L~~lgL~~f~KTSG~k-GlHV~vPl~~~~~~~~~r~fa~~iA~~l~~~~P 191 (245)
T TIGR02778 142 LLDELGLESFVKTSGGK-GLHVYVPLRPTLSWDEVKDFAKALAQALAQQMP 191 (245)
T ss_pred HHHHcCCccceEccCCC-eEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCc
Confidence 44444567999999999 8999999998763 3433333334455555566
No 162
>PF13974 YebO: YebO-like protein
Probab=20.49 E-value=1.2e+02 Score=24.87 Aligned_cols=21 Identities=29% Similarity=0.200 Sum_probs=11.8
Q ss_pred HHhcHHHHHHHHHHHHHHhcC
Q 012549 27 ISENAGEVQRETLRRILEQNY 47 (461)
Q Consensus 27 ~~~~~~~~Q~~~L~~iL~~na 47 (461)
..-+=.+.|..+|+++.+.+.
T Consensus 34 ~ileqQKrQn~LL~rL~~~~~ 54 (80)
T PF13974_consen 34 EILEQQKRQNALLRRLCEANE 54 (80)
T ss_pred HHHHHHHHHHHHHHHHhcccc
Confidence 333445556666666666554
Done!