Query 012549
Match_columns 461
No_of_seqs 118 out of 583
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 11:36:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012549.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012549hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4epl_A Jasmonic acid-amido syn 100.0 1E-101 4E-106 830.9 33.1 420 13-453 12-434 (581)
2 4b2g_A GH3-1 auxin conjugating 100.0 1E-100 4E-105 825.6 31.5 433 4-453 6-439 (609)
3 4eql_A 4-substituted benzoates 100.0 1.1E-99 4E-104 816.9 31.7 418 11-453 8-427 (581)
4 3qov_A Phenylacetate-coenzyme 99.6 1.1E-14 3.9E-19 150.5 19.3 286 29-443 17-316 (436)
5 2y27_A Phenylacetate-coenzyme 99.6 4.1E-14 1.4E-18 146.4 18.9 284 29-435 21-316 (437)
6 2y4o_A Phenylacetate-coenzyme 99.6 5.2E-14 1.8E-18 145.9 19.6 284 29-435 23-318 (443)
7 3hgu_A EHPF; phenazine, antibi 99.4 2.5E-13 8.4E-18 137.4 10.3 91 34-132 22-118 (369)
8 3ivr_A Putative long-chain-fat 98.3 7.5E-06 2.6E-10 85.9 13.9 97 311-434 272-386 (509)
9 2d1s_A Luciferase, luciferin 4 98.1 6.1E-05 2.1E-09 80.0 17.5 100 310-434 308-429 (548)
10 3e7w_A D-alanine--poly(phospho 98.1 5.8E-05 2E-09 79.2 15.9 102 307-434 256-387 (511)
11 3etc_A AMP-binding protein; ad 98.0 2.8E-05 9.5E-10 83.4 13.1 98 310-434 340-463 (580)
12 3l8c_A D-alanine--poly(phospho 98.0 6.9E-05 2.4E-09 78.6 15.0 100 309-434 262-391 (521)
13 3rix_A Luciferase, luciferin 4 98.0 0.00015 5.3E-09 76.7 17.4 100 310-434 306-427 (550)
14 1t5h_X 4-chlorobenzoyl COA lig 98.0 6.5E-05 2.2E-09 78.7 13.7 100 310-434 271-390 (504)
15 4fuq_A Malonyl COA synthetase; 97.9 0.00014 4.8E-09 76.3 16.0 100 309-434 266-387 (503)
16 3ni2_A 4-coumarate:COA ligase; 97.9 2.7E-05 9.4E-10 82.3 9.1 101 309-434 295-422 (536)
17 3fce_A D-alanine--poly(phospho 97.9 0.00011 3.6E-09 77.1 13.3 40 308-351 258-300 (512)
18 1mdb_A 2,3-dihydroxybenzoate-A 97.8 8E-05 2.7E-09 78.8 11.5 99 310-434 297-418 (539)
19 3g7s_A Long-chain-fatty-acid-- 97.8 0.00013 4.5E-09 77.2 12.8 28 104-132 180-207 (549)
20 3kxw_A Saframycin MX1 syntheta 97.8 0.00011 3.8E-09 78.1 11.6 29 103-132 166-194 (590)
21 2v7b_A Benzoate-coenzyme A lig 97.7 0.0001 3.4E-09 77.6 10.0 96 312-434 301-417 (529)
22 3o83_A Peptide arylation enzym 97.7 5.9E-05 2E-09 79.9 8.3 98 311-434 307-427 (544)
23 3ite_A SIDN siderophore synthe 97.7 0.00039 1.3E-08 73.7 14.3 27 106-133 177-203 (562)
24 3rg2_A Enterobactin synthase c 97.7 8.1E-05 2.8E-09 80.2 8.9 100 309-434 300-422 (617)
25 3nyq_A Malonyl-COA ligase; A/B 97.6 0.00032 1.1E-08 73.7 12.2 28 105-133 156-183 (505)
26 3c5e_A Acyl-coenzyme A synthet 97.6 0.0005 1.7E-08 73.4 13.1 98 310-434 321-444 (570)
27 3r44_A Fatty acyl COA syntheta 97.6 0.001 3.6E-08 69.8 15.3 29 103-132 169-197 (517)
28 3gqw_A Fatty acid AMP ligase; 97.6 0.00018 6.1E-09 76.1 9.4 28 104-132 176-203 (576)
29 3tsy_A Fusion protein 4-coumar 97.5 0.00018 6.3E-09 81.6 9.6 100 310-434 343-469 (979)
30 3ipl_A 2-succinylbenzoate--COA 97.4 0.0027 9.1E-08 66.1 15.9 29 103-132 162-190 (501)
31 1ry2_A Acetyl-coenzyme A synth 97.4 0.00097 3.3E-08 72.6 12.3 25 105-130 263-287 (663)
32 1amu_A GRSA, gramicidin synthe 97.3 0.0021 7.1E-08 68.4 14.3 26 105-131 183-208 (563)
33 4gr5_A Non-ribosomal peptide s 97.3 0.00091 3.1E-08 71.2 10.7 38 310-351 325-365 (570)
34 4dg8_A PA1221; ANL superfamily 97.2 0.0014 4.9E-08 70.8 11.7 27 103-130 163-189 (620)
35 1pg4_A Acetyl-COA synthetase; 97.2 0.0017 5.8E-08 70.5 11.6 26 104-130 256-281 (652)
36 1v25_A Long-chain-fatty-acid-C 97.1 0.0035 1.2E-07 66.2 13.2 26 104-130 176-201 (541)
37 4gs5_A Acyl-COA synthetase (AM 97.1 0.00065 2.2E-08 68.3 6.8 24 108-132 41-64 (358)
38 3t5a_A Long-chain-fatty-acid-- 97.1 0.0022 7.5E-08 66.0 10.8 27 105-132 184-210 (480)
39 2vsq_A Surfactin synthetase su 96.4 0.009 3.1E-07 69.9 10.3 27 103-130 606-632 (1304)
40 3isy_A Bsupi, intracellular pr 28.7 29 0.001 29.3 2.5 25 406-430 38-64 (120)
41 3oei_C RELK (toxin RV3358); to 22.4 23 0.00078 28.7 0.6 17 413-429 58-74 (96)
42 2ln7_A LPXTG-SITE transpeptida 22.3 28 0.00095 30.1 1.2 31 402-434 72-102 (147)
43 3g66_A Sortase C; pilus, trans 20.2 47 0.0016 30.7 2.3 31 402-434 125-155 (212)
No 1
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=100.00 E-value=1.1e-101 Score=830.94 Aligned_cols=420 Identities=44% Similarity=0.786 Sum_probs=388.8
Q ss_pred CCCccHHHHHHHHHHHhcHHHHHHHHHHHHHHhcCCChHHHHhhcCccCCCCCCC-cChH-HhhhcCCCcccccchHHHH
Q 012549 13 GNNYECDIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDAC-EMET-LYTSLVPLASHADLEPYIQ 90 (461)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~iL~~na~T~ygr~~~~~~~~~~f~~i-~s~e-dFr~~VPl~tYed~~pyIe 90 (461)
..+.+++.++.|++.++|+.++|+++|++||++|++|+|||+| ||++| ++++ |||++|||++|||++||||
T Consensus 12 ~~~~~~~~~~~~e~~~~~~~~vQ~~vL~~iL~~n~~Teygk~~-------gf~~i~~~~e~dF~~~VPi~~Yedl~pyIe 84 (581)
T 4epl_A 12 ETFDMNRVIDEFDEMTRNAHQVQKQTLKEILLKNQSAIYLQNC-------GLNGNATDPEEAFKSMVPLVTDVELEPYIK 84 (581)
T ss_dssp -CCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCHHHHTT-------TCC----CHHHHHHHHSCCBCHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHcCHHHHHHHHHHHHHHHhccCHHHHhc-------CCCcccCCHHHHHHHhCCCccHHHHHHHHH
Confidence 4567888999999999999999999999999999999999999 99999 9999 9999999999999999999
Q ss_pred HHhcCCCCCcccCcccceeecccCCCCCcccccccChhcHHHHHHHHHHHHHHHHhcCC-CCCCCcEEEEEecCCccccC
Q 012549 91 RIADGDTASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRLAAAYRSRVYP-IREGGRILEFIYSSKQFKTK 169 (461)
Q Consensus 91 Ri~~Ge~~~vl~~~pi~~f~~TSGTT~G~~K~IP~T~~~~~~~~~~~~~~~~~~~~~~p-~~~~gk~l~~~~~~~~~~t~ 169 (461)
||++||.++|||++|+.+|++|||||+|++|+||+|+++++.+++++.+|+.++++ +| +...||.|++++++.+..|+
T Consensus 85 Ri~~Ge~~~iL~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~~~~~~~~~~~~~~~-~p~l~~~Gk~L~l~~~s~~~~t~ 163 (581)
T 4epl_A 85 RMVDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMENTLQLFRTAFAFRNR-DFPIDDNGKALQFIFSSKQYIST 163 (581)
T ss_dssp HHHTTCCSSSSSSSCCSEEEEEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHH-HSCCCTTCEEEEECCCCCCEECT
T ss_pred HHHCCCCCCccCCCCcceEEecCCCCCCCccccccCHHHHHHHHHHHHHHHHHHhh-CCccccCCcEEEEeecCCcccCC
Confidence 99999988999999999999999999999999999999999987777888777766 55 43258999988899999999
Q ss_pred CCceeeccccccccchhHHhhhhhhccccCCchhhhccCChhhhHHHHHHhcccCCCCeeEEEecchHHHHHHHHHHHHH
Q 012549 170 GGLTAGTATTHYYASEEFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEEC 249 (461)
Q Consensus 170 ~Gi~~G~~S~~~~~~~~f~~~~~~~~~~~~~P~ev~~~~d~~~~~Y~~Ll~aL~~~~~l~~i~~~f~~~ll~~~~~l~~~ 249 (461)
+|+|+|++|++++++.+|+.+|.++...|++|.+++.++|..+++||||||||.++++|.+|+++|+++|+.+++.|+++
T Consensus 164 ~Gi~~G~~S~~~~~s~~f~~~p~~~~~~~t~P~e~i~~~D~~~~~Y~~Ll~~L~~~~~v~~i~a~fas~ll~~~~~l~~~ 243 (581)
T 4epl_A 164 GGVPVGTATTNVYRNPNFKAGMKSITSPSCSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQV 243 (581)
T ss_dssp TSCEEECHHHHHHTSTTHHHHHGGGSCCBSSCHHHHTCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHH
T ss_pred CCceeeechhhhhhcchhhcCchhhhhcccCCHHHhcCCCHHHHHHHHHHHhhhccccccEEeeccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcccCCCCCCCcHHHHHhhcccCCCcHHHHHHHHHHhcccccCCccCcccCCCCCCceEEEEEcCChHHHHH
Q 012549 250 WQDICIDVREGSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGSMQHYLK 329 (461)
Q Consensus 250 w~~l~~dI~~Gt~~~~~i~~~~~r~~l~~~l~~~p~~A~~L~~~~~~~~~~~~~gi~~~lWP~L~~v~~~~~G~~~~y~~ 329 (461)
|+++|+||++|+++ ++++++++|++++++++|+|++|++|+++|++.+ +|.|++++|||||++|.||++|+|++|++
T Consensus 244 We~l~~dI~~gtl~-~~it~~~~R~~l~~v~~p~~~~a~~l~~~~~~~~--~~~g~i~~lWPnl~~i~~~~~G~~~~Y~~ 320 (581)
T 4epl_A 244 WEEIVTDIKDGVLS-NRITVPSVRTAMSKLLTPNPELAETIRTKCMSLS--NWYGLIPALFPNAKYVYGIMTGSMEPYVP 320 (581)
T ss_dssp HHHHHHHHHHTCCC-TTCCCHHHHHHHHTTCCCCHHHHHHHHHHHHHSS--TTTTHHHHHCTTCCCEEEECSGGGGGGHH
T ss_pred HHHHHHHHHhcCCC-cCCCCHHHHHHHhCCCCCCHHHHHHHHHHhCCCC--ccccCHHHhCCCCceEEEEeCCChHHHHH
Confidence 99999999999999 8899999999999999999999999999999811 38999999999999999999999999999
Q ss_pred HHHhHhCCCCcccCccccCceeEEeeCCCCCCCCCceeeeeCCceEEEEeecCccccCCCCCCCCCCCCcccccCCCcCC
Q 012549 330 KLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVPLSQVKLG 409 (461)
Q Consensus 330 ~l~~~~~~vpi~~~~Y~aSEg~igi~~~~~~~~~~~~~~l~p~~~ffEFip~~~~~~~~~~~~~~~~~~~~l~l~Ele~G 409 (461)
+|++|+|++|+++++|+||||+||+|+++.++++.++|+|+|+.+||||||+++.++ +++++++++|||+|
T Consensus 321 ~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~p~~~ffEFiP~~~~~~---------~~~~~v~l~eve~G 391 (581)
T 4epl_A 321 KLRHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGYFEFLPVSETGE---------GEEKPVGLTQVKIG 391 (581)
T ss_dssp HHHHHHTTSCEEECCEEETTEEEEECCCTTSCTTTCCEEECTTSCEEEEEEC----------------CCCEEGGGCCTT
T ss_pred HHHHHcCCCccccCceeccceeeeeecCCCCCccccceeecCCcEEEEEEecccccC---------CCCceeeHHHcCCC
Confidence 999999999999999999999999999999998878999999999999999987653 56899999999999
Q ss_pred CeEEEEEeccCceeccccCCEEEecccccCCCceehhhHHhhcc
Q 012549 410 QEYEIVLTSFTGKSFISISIKIPISMNRSFSCSILYVFFFFLQT 453 (461)
Q Consensus 410 ~~YelVvTt~~GLyRYriGDvV~v~g~~~~~cp~~~~~~~~~~~ 453 (461)
++|||||||.+||||||+||+|+|+|+ ++++|.++|..|-.+.
T Consensus 392 ~~YelviTt~~GL~RYr~GD~v~v~g~-~~~~p~~~~~gR~~~~ 434 (581)
T 4epl_A 392 EEYEVVITNYAGLYRYRLGDVVKVIGF-YNNTPQLKFICRRNLI 434 (581)
T ss_dssp CEEEEEEESTTSCSSEEEEEEEEEEEE-ETTEEEEEEEEETTCC
T ss_pred CeEEEEEeeccceeeEEcCCEEEEecc-cCCCcEEEEEeecCCe
Confidence 999999999999999999999999999 8899999998886654
No 2
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=100.00 E-value=1.3e-100 Score=825.58 Aligned_cols=433 Identities=29% Similarity=0.534 Sum_probs=400.1
Q ss_pred cccCCCCCcCCCccHHHHHHHHHHHhcHHHHHHHHHHHHHHhcCCChHHHHhhcCccCCCCCCCcChHHhhhcCCCcccc
Q 012549 4 ANNTNGNGYGNNYECDIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHA 83 (461)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~iL~~na~T~ygr~~~~~~~~~~f~~i~s~edFr~~VPl~tYe 83 (461)
..++++.-+..+.|++.++.|++.++|+.++|+++|++||++|++|+|||+| ||++|++.+||+++|||+|||
T Consensus 6 ~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~Q~~~L~~lL~~~~~T~~gr~~-------gf~~i~~~~dF~~~VPv~~Ye 78 (609)
T 4b2g_A 6 ILSSPLGPAASEKDAKALQFIEEMTRNADSVQERVLAEILSRNGETEYLKRF-------KLEGSTVRETFKSKIPVIKYE 78 (609)
T ss_dssp ----------CHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSTTSHHHHTT-------CCTTCCSHHHHHHHSCCBCHH
T ss_pred cccCchhhhcccchHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCChHHHhc-------CCCCCCCHHHHHHhCCCccHH
Confidence 4567777888899999999999999999999999999999999999999999 999999999999999999999
Q ss_pred cchHHHHHHhcCCCCCcccCcccceeecccCCCCCcccccccChhcHHHHHHHHHHHHHHHHhcCC-CCCCCcEEEEEec
Q 012549 84 DLEPYIQRIADGDTASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRLAAAYRSRVYP-IREGGRILEFIYS 162 (461)
Q Consensus 84 d~~pyIeRi~~Ge~~~vl~~~pi~~f~~TSGTT~G~~K~IP~T~~~~~~~~~~~~~~~~~~~~~~p-~~~~gk~l~~~~~ 162 (461)
|++||||||++||.++|||++|+.+|++|||||+|++|+||+|+++++.+++++.+|+.++++++| +. .||.|++.++
T Consensus 79 dl~p~ieRi~~Ge~~~il~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~~~~~~~~~~~~~~~~~p~~~-~Gk~l~l~~~ 157 (609)
T 4b2g_A 79 DLQPEIQRIANGDRSAILSAHPISEFLTSSGTSAGERKLMPTIQEELDRRQMLYSLLMPVMNLYVPGLD-KGKGLYFLFV 157 (609)
T ss_dssp HHHHHHHHHHTTCCSSSSCSSCCCEEEEEEEEETTEEEEEEECTTHHHHHHHHHHHHHHHHHHHSCCGG-GSEEEECCCC
T ss_pred HHHHHHHHHhcCCCCCccCCCCCCeEEeCCCCCCCCceeeecCHHHHHHHHHHHHHHHHHHHhcCCccc-CCCeEEEccc
Confidence 999999999999977999999999999999999999999999999999988889999999998898 66 7999998888
Q ss_pred CCccccCCCceeeccccccccchhHHhhhhhhccccCCchhhhccCChhhhHHHHHHhcccCCCCeeEEEecchHHHHHH
Q 012549 163 SKQFKTKGGLTAGTATTHYYASEEFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQA 242 (461)
Q Consensus 163 ~~~~~t~~Gi~~G~~S~~~~~~~~f~~~~~~~~~~~~~P~ev~~~~d~~~~~Y~~Ll~aL~~~~~l~~i~~~f~~~ll~~ 242 (461)
+.+..|++|+|+|++|++++++.+|+.+|......|++|.+++.++|..+++||||||||.++++|+.|+++|+++|+.+
T Consensus 158 ~~~~~t~~Gi~~g~~s~~~~~s~~f~~~p~~~~~~~~sP~~~i~~~D~~~~~Y~~Ll~~L~~~~~v~~lsa~fa~~ll~~ 237 (609)
T 4b2g_A 158 KSETRTPGGLLARPVLTSYYKSEHFKTRPYDPYNVYTSPNEAILCADSFQSMYTQMLCGIYERKQVLRLGAVFASGLLRA 237 (609)
T ss_dssp CCCEECTTSCEEECHHHHHHTSHHHHTCCCCTTCCBSSCHHHHHCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHH
T ss_pred CCcccCCCCcccccchhhhhccchhhccccchhhcccCcHHHhcCcCHHHHHHHHHHHHhhcccccceeeehhHHHHHHH
Confidence 88999999999999999999999999998777778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcccCCCCCCCcHHHHHhhcccCCCcHHHHHHHHHHhcccccCCccCcccCCCCCCceEEEEEcC
Q 012549 243 FTAFEECWQDICIDVREGSLSSSRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTG 322 (461)
Q Consensus 243 ~~~l~~~w~~l~~dI~~Gt~~~~~i~~~~~r~~l~~~l~~~p~~A~~L~~~~~~~~~~~~~gi~~~lWP~L~~v~~~~~G 322 (461)
++.|+++|+++|+||++|+++ ++++++.+|.++.++++|+|++|++|+++|++ . +|.|++++|||||++|.||++|
T Consensus 238 ~~~L~~~Weel~~dI~~gtl~-~~it~~~~r~a~~~~lsp~~~la~~l~~~~~~-~--~~~g~i~~lWPnlk~l~~~~tG 313 (609)
T 4b2g_A 238 IRFLQLNWHQLTHDIRTGTLS-PKITDPSVRNCVAGVLKPDPELADLVAGECSK-D--NWEGIITRIWPNTKYLDVIVTG 313 (609)
T ss_dssp HHHHHHHHHHHHHHHHHTCCC-TTCCCHHHHHHTTTTCCCCHHHHHHHHHHHTS-S--CCTTTHHHHSTTCCEEEEECSG
T ss_pred HHHHHHHHHHHHHHHHhccCC-cCCCCHHHHHHHhcCCCcCHHHHHHHHHHhCC-C--ccccCHHHhCCCCcEEEEEccC
Confidence 999999999999999999999 88999999999999999999999999999998 3 6999999999999999999999
Q ss_pred ChHHHHHHHHhHhCCCCcccCccccCceeEEeeCCCCCCCCCceeeeeCCceEEEEeecCccccCCCCCCCCCCCCcccc
Q 012549 323 SMQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVP 402 (461)
Q Consensus 323 ~~~~y~~~l~~~~~~vpi~~~~Y~aSEg~igi~~~~~~~~~~~~~~l~p~~~ffEFip~~~~~~~~~~~~~~~~~~~~l~ 402 (461)
+|++|+++|++|+|++|+++++|+||||+||+|+++.|+++..+|+|+|+.+||||||+++.+.+ -++.+++++|+
T Consensus 314 ~~~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~p~~~~~~L~p~~~ffEFIP~~~~~~~----~~~~~~~~~v~ 389 (609)
T 4b2g_A 314 AMAQYIPTLDYYSGGLPLACTMYASSECYFGLNLNPMSKPSEVSYTIMPNMAYFEFLPHEHSSIP----LSRDSPPRLVD 389 (609)
T ss_dssp GGGGGHHHHHHHHTSCCEECCEEECSSCEEEECSCTTSCGGGCCEEECTTSCEEEEEEGGGTTSC----CCSSSCCCCEE
T ss_pred ChHHHHHHHHHHcCCCccccCcccccceeeeeecCCCCCcccCceeecCCcEEEEEEeccccccc----cccCCCCcccc
Confidence 99999999999999999999999999999999999999887789999999999999998865210 01236789999
Q ss_pred cCCCcCCCeEEEEEeccCceeccccCCEEEecccccCCCceehhhHHhhcc
Q 012549 403 LSQVKLGQEYEIVLTSFTGKSFISISIKIPISMNRSFSCSILYVFFFFLQT 453 (461)
Q Consensus 403 l~Ele~G~~YelVvTt~~GLyRYriGDvV~v~g~~~~~cp~~~~~~~~~~~ 453 (461)
++|||+|++|||||||.+||||||+||+|+|+|| +++||.++|..|-.+.
T Consensus 390 l~eVe~G~~YelViTt~~GL~RYr~GD~v~v~~f-~~~~p~i~~~gR~~~~ 439 (609)
T 4b2g_A 390 LAHVEVGKEYELVITTYAGLYRYRVGDILRVTGF-HNSAPQFHFVRRKNVL 439 (609)
T ss_dssp GGGCCTTCEEEEEEECTTSCCSEEEEEEEEEEEE-ETTEEEEEEEEETTCC
T ss_pred HhHcCCCCeEEEehhhhhhhhheecCCEEEEeec-CCCCcEEEEEEecCCe
Confidence 9999999999999999999999999999999999 7899999998886654
No 3
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=100.00 E-value=1.1e-99 Score=816.88 Aligned_cols=418 Identities=31% Similarity=0.537 Sum_probs=392.4
Q ss_pred CcCCCccHHHHHHHHHHHhcHHHHHHHHHHHHHHhcCCChHHHHhhcCccCCCCCCCcChHHhhhcCCCcccccchHHHH
Q 012549 11 GYGNNYECDIIRWFEYISENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHADLEPYIQ 90 (461)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~iL~~na~T~ygr~~~~~~~~~~f~~i~s~edFr~~VPl~tYed~~pyIe 90 (461)
.+..+.|++.++.|++.++||.++|+++|++||++|++|+|||+| |++|++++|||++|||++|||++||||
T Consensus 8 ~~~~~~~~~~~~~~e~~~~~~~~vQ~~vL~~iL~~n~~Teygk~~--------f~~i~~~~~F~~~VPi~~Yedl~pyIe 79 (581)
T 4eql_A 8 KPIFDINETFEKQLKDLTSNVKSIQDNLLEEIITPNTKTEYLQRF--------LIDRFDKELFKKNVPIVSYEDIKPYLD 79 (581)
T ss_dssp ------CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTTSHHHHHT--------TCCSCCHHHHHHHSCCBCHHHHHHHHH
T ss_pred ccccCCcHHHHHHHHHHHcCHHHHHHHHHHHHHHhhccCHHHHHH--------hhcCCCHHHHHHhCCCccHHHHHHHHH
Confidence 456778999999999999999999999999999999999999999 789999999999999999999999999
Q ss_pred HHhcCCCCCcccCcccceeecccCCCCCcccccccChhcHHHHHHHHHHHHHHHHhcCC-CCCCCcEEEEEecCCccccC
Q 012549 91 RIADGDTASLLTQEPITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRLAAAYRSRVYP-IREGGRILEFIYSSKQFKTK 169 (461)
Q Consensus 91 Ri~~Ge~~~vl~~~pi~~f~~TSGTT~G~~K~IP~T~~~~~~~~~~~~~~~~~~~~~~p-~~~~gk~l~~~~~~~~~~t~ 169 (461)
||++||.++|||++|+.+|++|||||+|++|+||+|+++++.+++++.+|+.++++++| +. .||.|++.+...+..|+
T Consensus 80 Ri~~Ge~~~iL~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~~~~~~~~~~~~~~~~~p~~~-~Gk~l~l~~~~~~~~t~ 158 (581)
T 4eql_A 80 RVVNGESSDVISARTITGFLLSSGTSGGAQKMMPWNNKYLDNLTFIYDLRMQVITKHVKGVE-EGKGMMFLFTKQESMTP 158 (581)
T ss_dssp HHHTTCCGGGTCSSCCCEEEEEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCSCT-TSEEEECCCCCCCEECT
T ss_pred HHHcCCCCcccCCCCCCeEEeCCCCCCCCccccccCHHHHHHHHHHHHHHHHHHHhcCCccc-cCCEEEEeccCCcccCC
Confidence 99999966999999999999999999899999999999999988889999999998899 66 89999988888888999
Q ss_pred CCceeeccccccccchhHHhhhhhhccccCCchhhhccCChhhhHHHHHHhcccCCCCeeEEEecchHHHHHHHHHHHHH
Q 012549 170 GGLTAGTATTHYYASEEFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFITSTFAYSIVQAFTAFEEC 249 (461)
Q Consensus 170 ~Gi~~G~~S~~~~~~~~f~~~~~~~~~~~~~P~ev~~~~d~~~~~Y~~Ll~aL~~~~~l~~i~~~f~~~ll~~~~~l~~~ 249 (461)
+|+|+|++|++++++.+|+.+|..+...|++|.+++.+.|..+++||||||||.++++|+.|+++|+++|+.+++.|+++
T Consensus 159 ~G~~~g~~s~~~~~~~~f~~~p~~~~~~~~~P~~~i~~~d~~~~~Y~~ll~~L~~~~~v~~isa~fa~~ll~~~~~L~~~ 238 (581)
T 4eql_A 159 SGLPARVATSSYFKSDYFKNRPSNWYYSYTSPDEVILCPNNTESLYCHLLCGLVQRDEVVRTGSIFASVMVRAIEVLKNS 238 (581)
T ss_dssp TSCEEECHHHHHHTSHHHHTCCCSGGGCBSSCHHHHHCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHH
T ss_pred CCeeecccchhhhhcchhhcccchhhhcccCchHhhcCCCHHHHHHHHHHHHhhcccccceeeehhHHHHHHHHHHHHHH
Confidence 99999999999999999999987777789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcccCCCCCCCcHHHHHhhcccCC-CcHHHHHHHHHHhcccccCCccCcccCCCCCCceEEEEEcCChHHHH
Q 012549 250 WQDICIDVREGSLSSSRITLPKMRKAVLDTIS-PKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGSMQHYL 328 (461)
Q Consensus 250 w~~l~~dI~~Gt~~~~~i~~~~~r~~l~~~l~-~~p~~A~~L~~~~~~~~~~~~~gi~~~lWP~L~~v~~~~~G~~~~y~ 328 (461)
|+++|+||++|+++ ++++++++|.++...++ |||++|++|+++|++ . +|.|++++|||||++|.||++|+|++|+
T Consensus 239 weel~~dI~~gtl~-~~it~~~~r~~~~~~L~~P~p~~A~~l~~~~~~-~--~~~g~i~~lWPnl~~l~~~~~G~~~~Y~ 314 (581)
T 4eql_A 239 WEELCSNIRSGHLS-NWVTDLGCQNSVSLVLGGPRPELADTIEEICNQ-N--SWKGIVKRLWPNTKYIETVVTGSMGQYV 314 (581)
T ss_dssp HHHHHHHHHHTCCC-TTCCCHHHHHHHHHHHCSCCHHHHHHHHHHHTS-S--CCTTHHHHHSTTCCEEEEECSGGGGGGH
T ss_pred HHHHHHHHHhCCCc-ccCcChHHHHHHHHHhcCCCHHHHHHHHHHhcC-C--CccCCHHHhCCCCcEEEEEcCCChHHHH
Confidence 99999999999999 88999999999999997 999999999999998 3 5889999999999999999999999999
Q ss_pred HHHHhHhCCCCcccCccccCceeEEeeCCCCCCCCCceeeeeCCceEEEEeecCccccCCCCCCCCCCCCcccccCCCcC
Q 012549 329 KKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVPLSQVKL 408 (461)
Q Consensus 329 ~~l~~~~~~vpi~~~~Y~aSEg~igi~~~~~~~~~~~~~~l~p~~~ffEFip~~~~~~~~~~~~~~~~~~~~l~l~Ele~ 408 (461)
++|++|+|++|+++++|+||||+||||+++.|+++..+|+|+|+.+||||||+++. ++|++++++|||+
T Consensus 315 ~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~~~~~ffEFip~~~~-----------~~~~~v~l~eVe~ 383 (581)
T 4eql_A 315 PMLNYYCNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFMPNMSYFEFIPMDGG-----------DKNDVVDLEDVKL 383 (581)
T ss_dssp HHHHHHHTTCCEECCEEECSSCEEEECSCTTSCGGGCCEEECTTSSEEEEEECSTT-----------CCSSCEEGGGCCT
T ss_pred HHHHHHcCCCccccCccccccceeeeccCCCCCcccCceeecCCcEEEEEEecccc-----------CCCcEeCHHHcCC
Confidence 99999999999999999999999999999999887778999999999999998864 3578999999999
Q ss_pred CCeEEEEEeccCceeccccCCEEEecccccCCCceehhhHHhhcc
Q 012549 409 GQEYEIVLTSFTGKSFISISIKIPISMNRSFSCSILYVFFFFLQT 453 (461)
Q Consensus 409 G~~YelVvTt~~GLyRYriGDvV~v~g~~~~~cp~~~~~~~~~~~ 453 (461)
|++|||||||.+||||||+||+|+|+|| +++||.++|..|-.+.
T Consensus 384 G~~YelViTt~~GL~RYr~GD~v~v~~f-~~~~p~i~f~gR~~~~ 427 (581)
T 4eql_A 384 GCTYEPVVTNFAGLYRMRVGDIVLVTGF-YNNAPQFKFVRRENVV 427 (581)
T ss_dssp TCEEEEEEECSSSCCSEECCEEEEEEEE-ETTEEEEEEEEETTEE
T ss_pred CceEEEEEeeccceeeEEcCCEEEEccc-CCCCcEEEEEEecCCE
Confidence 9999999999999999999999999999 7899999998886543
No 4
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.62 E-value=1.1e-14 Score=150.53 Aligned_cols=286 Identities=17% Similarity=0.167 Sum_probs=166.9
Q ss_pred hcHHHHHHHHHHHHHHhcCCChHHHHhhcCccCCCCCCCcChHHhhhcCCCcccccchHHHHHHhcCCCCCccc--C-cc
Q 012549 29 ENAGEVQRETLRRILEQNYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHADLEPYIQRIADGDTASLLT--Q-EP 105 (461)
Q Consensus 29 ~~~~~~Q~~~L~~iL~~na~T~ygr~~~~~~~~~~f~~i~s~edFr~~VPl~tYed~~pyIeRi~~Ge~~~vl~--~-~p 105 (461)
++.++.|.+.|+++++...+++|+|+++. ..+.....+.+.+|++ ++|+++++++++... ...++ + +-
T Consensus 17 ~~~~~~q~~~L~~~l~~~~~~p~y~~~~~-~~g~~~~~i~~~~dl~-~lP~~~~~~l~~~~p-------~~~~~~~~~~~ 87 (436)
T 3qov_A 17 EKLQELQLQRLKKTINIAANSPYYKEVFS-KNGITGDSIQSLDDIR-KIPFTTKSDMRANYP-------FGLVAGDMKRD 87 (436)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSHHHHHHHH-HTTCCTTSCSSSGGGG-GSCCBCHHHHHHTTT-------TTTCCSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHHH-HcCCChhhCCCHHHHH-HCCCCCHHHHHhcCC-------CccccCCCcCC
Confidence 45688999999999987799999999865 3445556789999998 599999999875321 11221 1 33
Q ss_pred cceeecccCCCCCcccccccChhcHHHHHHHHHHHHHHHHhcCCCCCCCcEEEEEecCCccccCCCceeeccccccccch
Q 012549 106 ITKLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRLAAAYRSRVYPIREGGRILEFIYSSKQFKTKGGLTAGTATTHYYASE 185 (461)
Q Consensus 106 i~~f~~TSGTT~G~~K~IP~T~~~~~~~~~~~~~~~~~~~~~~p~~~~gk~l~~~~~~~~~~t~~Gi~~G~~S~~~~~~~ 185 (461)
+.+...||||| |+||-+++|++.+....... ......+++..+.+.+. +. +. +.-.|.. .
T Consensus 88 ~a~i~~TSGTT-G~PK~v~~th~~~~~~~~~~----~~~~~~~~~~~~d~~~~-~~-~~------~~~~~~~---~---- 147 (436)
T 3qov_A 88 GVRIHSSSGTT-GNPTVIVHSQHDLDSWANLV----ARCLYMVGIRKTDVFQN-SS-GY------GMFTGGL---G---- 147 (436)
T ss_dssp EEEEEECSCSS-SCCCEEEEEHHHHHHHHHHH----HHHHHHTTCCTTSEEEE-CS-CC------TTCHHHH---H----
T ss_pred eEEEEECCCcC-CCCeEEEECHHHHHHHHHHH----HHHHHHcCCCCCCEEEE-Cc-cc------ccchhHH---H----
Confidence 55788999999 99999999998764432221 11112234432333332 11 10 0000000 0
Q ss_pred hHHhhhhhhccccCCchhhhccCChhhhHHHHHHhcccCCCCeeEEE-ecchHHHHHHHHHHHHHHHHHHHHHHcccCCC
Q 012549 186 EFKIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFIT-STFAYSIVQAFTAFEECWQDICIDVREGSLSS 264 (461)
Q Consensus 186 ~f~~~~~~~~~~~~~P~ev~~~~d~~~~~Y~~Ll~aL~~~~~l~~i~-~~f~~~ll~~~~~l~~~w~~l~~dI~~Gt~~~ 264 (461)
..+..+..|. ..+. ..+ +-+++++.|++..+.
T Consensus 148 ---------------------------~~~~~l~~G~------~~~~~~~~-------------~~~~~~~~i~~~~~t- 180 (436)
T 3qov_A 148 ---------------------------FQYGAERLGC------LTVPAAAG-------------NSKRQIKFISDFKTT- 180 (436)
T ss_dssp ---------------------------HHHHHHHHTC------EEECCCSC-------------CHHHHHHHHHHHTCC-
T ss_pred ---------------------------HHHHHHHcCC------EEEeCCCC-------------CHHHHHHHHHHHCCC-
Confidence 0011111111 1111 011 113445556555555
Q ss_pred CCCCcHHHHHhhcccCCCcHHHHHHHHHHhcccccCCccCcccCCCCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcc
Q 012549 265 SRITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLV 341 (461)
Q Consensus 265 ~~i~~~~~r~~l~~~l~~~p~~A~~L~~~~~~~~~~~~~gi~~~lWP~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~ 341 (461)
. +.+. |..+..|.+.... . ++-+ -.++++ .+++|+ ....++.+++.+ +++++
T Consensus 181 ----~------~~~~----P~~~~~l~~~~~~-~-----~~~~-~~~~lr---~i~~gGe~l~~~~~~~~~~~~-g~~v~ 235 (436)
T 3qov_A 181 ----A------LHAI----PSYAIRLAEVFQE-E-----GIDP-RETTLK---TLVIGAEPHTDEQRRKIERML-NVKAY 235 (436)
T ss_dssp ----E------EECC----HHHHHHHHHHHHH-T-----TCCT-TSSSCC---EEEEESSCCCHHHHHHHHHHH-TSEEE
T ss_pred ----E------EEEC----HHHHHHHHHHHHH-c-----CCCc-ccCCcc---EEEEeCCcCCHHHHHHHHHHh-CccEE
Confidence 1 2222 3344444333232 1 1211 245777 555555 566778888888 78888
Q ss_pred cCccccCce-e--EEeeCCCCCCCCCceeeeeCCceEEEEeecCccccCCCCCCCCCCCCcccccCCCcCCCeEEEEEec
Q 012549 342 SADYGSTES-W--IGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTS 418 (461)
Q Consensus 342 ~~~Y~aSEg-~--igi~~~~~~~~~~~~~~l~p~~~ffEFip~~~~~~~~~~~~~~~~~~~~l~l~Ele~G~~YelVvTt 418 (461)
..||+||+ . ++... ... .++.+......+|.++.+. .+. |..|+.+||+||+
T Consensus 236 -~~YG~TE~~~~~~~~~~--~~~---~g~~~~~~~~~v~i~d~~~--------------g~~-----~~~g~~Gel~v~~ 290 (436)
T 3qov_A 236 -NSFGMTEMNGPGVAFEC--QEQ---NGMHFWEDCYLVEIIDPET--------------GEP-----VPEGEIGELVLTT 290 (436)
T ss_dssp -EEEEEGGGTEEEEEEEC--TTC---SSEEECTTTEEEEEECTTT--------------CSB-----CSTTCCEEEEEEE
T ss_pred -ecCcchhhcCCeeEEec--CCC---CeeEEccCceEEEEEECCC--------------CCC-----CCCCCceEEEEec
Confidence 99999997 3 44333 221 2455555677888887432 122 6799999999996
Q ss_pred cC----ceeccccCCEEEecccccCCCce
Q 012549 419 FT----GKSFISISIKIPISMNRSFSCSI 443 (461)
Q Consensus 419 ~~----GLyRYriGDvV~v~g~~~~~cp~ 443 (461)
.. .+.||++||++++. .++|++
T Consensus 291 ~~~~~~~~~~y~TGDl~~~~---~~gc~c 316 (436)
T 3qov_A 291 LDREMMPLIRYRTRDLTRIL---PGKCPC 316 (436)
T ss_dssp SSCCSSCCCSEEEEEEECEE---CSCCTT
T ss_pred cCcCCceEEEEEcCCEEEEc---CCCCCC
Confidence 32 26689999999998 557775
No 5
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.58 E-value=4.1e-14 Score=146.36 Aligned_cols=284 Identities=18% Similarity=0.159 Sum_probs=164.5
Q ss_pred hcHHHHHHHHHHHHHHh-cCCChHHHHhhcCccCCCCCCCcChHHhhhcCCCcccccchHHHHHHhcCCCCCcccCcccc
Q 012549 29 ENAGEVQRETLRRILEQ-NYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHADLEPYIQRIADGDTASLLTQEPIT 107 (461)
Q Consensus 29 ~~~~~~Q~~~L~~iL~~-na~T~ygr~~~~~~~~~~f~~i~s~edFr~~VPl~tYed~~pyIeRi~~Ge~~~vl~~~pi~ 107 (461)
++.++.|.+.|+++|+. .+++.|+++++. ..+.....+.+.+||+ ++|+++|+++++... .+ ..-..++.+.
T Consensus 21 ~~~~~~~~~~l~~~l~~a~~~~~~y~~~~~-~~~~~~~~i~~~~dl~-~lP~~~~~~l~~~~~---~~--~~~~~~~~~~ 93 (437)
T 2y27_A 21 DELTALQLERLKWSLRHAYDHSPVYRRKFD-EAGVHPDDLKTLADLS-RFPFTTKGDLRDSYP---FG--MFAVPQDRIS 93 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHH-HHTCCGGGCSSGGGGG-GSCCBCHHHHHHTTT---TT--TCSSCGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HcCCChhhCCCHHHHH-HCCCCCHHHHHhcCC---Cc--cccCChhHeE
Confidence 45778999999999996 689999999865 2344456688999999 699999998864321 01 0112344455
Q ss_pred eeecccCCCCCcccccccChhcHHHHHHHHHHHHHHHHhcCCCCCCCcEEEEEecCCccccCCCceeeccccccccchhH
Q 012549 108 KLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRLAAAYRSRVYPIREGGRILEFIYSSKQFKTKGGLTAGTATTHYYASEEF 187 (461)
Q Consensus 108 ~f~~TSGTT~G~~K~IP~T~~~~~~~~~~~~~~~~~~~~~~p~~~~gk~l~~~~~~~~~~t~~Gi~~G~~S~~~~~~~~f 187 (461)
+...||||| |+||-+++|++.+........ .....+++..+.+.+.+ . +. +.-.+. ..
T Consensus 94 ~i~~TSGTT-G~PK~v~~t~~~~~~~~~~~~----~~~~~~~~~~~d~~~~~-~-~~------~~~~~~---~~------ 151 (437)
T 2y27_A 94 RIHASSGTT-GKPTVVGYTAADIDTWANLVA----RSIRAAGARRGDKVHVS-Y-GY------GLFTGG---LG------ 151 (437)
T ss_dssp EEEECCCTT-SSCCEEEECHHHHHHHHHHHH----HHHHHTTCCTTCEEEEC-S-CC------SSSHHH---HH------
T ss_pred EEEECCCCC-CCceEEecCHHHHHHHHHHHH----HHHHHcCCCCCCEEEEc-c-cc------cccccc---hH------
Confidence 788999999 899999999987654332211 11122444423443321 1 00 000000 00
Q ss_pred HhhhhhhccccCCchhhhccCChhhhHHHHHHhcccCCCCeeEEE-ecchHHHHHHHHHHHHHHHHHHHHHHcccCCCCC
Q 012549 188 KIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFIT-STFAYSIVQAFTAFEECWQDICIDVREGSLSSSR 266 (461)
Q Consensus 188 ~~~~~~~~~~~~~P~ev~~~~d~~~~~Y~~Ll~aL~~~~~l~~i~-~~f~~~ll~~~~~l~~~w~~l~~dI~~Gt~~~~~ 266 (461)
..+..++.+ ...+. ..+ +.+++++.|++..+.
T Consensus 152 -------------------------~~~~~~~~G------~~~~~~~~~-------------~~~~~~~~i~~~~~t--- 184 (437)
T 2y27_A 152 -------------------------AHYGAERAG------LTVIPFGGG-------------QTEKQVQLIQDFRPD--- 184 (437)
T ss_dssp -------------------------HHHHHHHTT------CEEECCCSC-------------CHHHHHHHHHHHCCS---
T ss_pred -------------------------HHHHHHHcC------CEEEeCCCC-------------CHHHHHHHHHHhCCC---
Confidence 000111111 11111 111 234455566655555
Q ss_pred CCcHHHHHhhcccCCCcHHHHHHHHHHhcccccCCccCcccCCCCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccC
Q 012549 267 ITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSA 343 (461)
Q Consensus 267 i~~~~~r~~l~~~l~~~p~~A~~L~~~~~~~~~~~~~gi~~~lWP~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~~~ 343 (461)
. +.+. |..+..|.+...+ . ++-.+ +++++ .+++|+ ....++.+++.+ ++++. .
T Consensus 185 --~------l~~~----Ps~~~~l~~~~~~-~-----~~~~~-~~~lr---~i~~gGe~l~~~~~~~~~~~~-g~~v~-~ 240 (437)
T 2y27_A 185 --I------IMVT----PSYMLSIADEIER-Q-----GLDPV-QSSLR---IGIFGAEPWTNDMRVAIEQRM-GIDAV-D 240 (437)
T ss_dssp --E------EEEC----HHHHHHHHHHHHH-T-----TCCGG-GSSCC---EEEEESSCCCHHHHHHHHHHH-TSEEE-E
T ss_pred --E------EEEC----HHHHHHHHHHHHH-c-----CCCcc-cCCee---EEEEcCccCCHHHHHHHHHHH-CcCEE-e
Confidence 2 2222 3344444333222 1 11111 46788 444444 666778888878 68888 9
Q ss_pred ccccCce--e-EEeeCCCCCCCCCceeeeeCCceEEEEeecCccccCCCCCCCCCCCCcccccCCCcCCCeEEEEEeccC
Q 012549 344 DYGSTES--W-IGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFT 420 (461)
Q Consensus 344 ~Y~aSEg--~-igi~~~~~~~~~~~~~~l~p~~~ffEFip~~~~~~~~~~~~~~~~~~~~l~l~Ele~G~~YelVvTt~~ 420 (461)
.||+||+ . ++.+.... . .++.+.....++|.++.+. + +. |..|+.+||+||+..
T Consensus 241 ~YG~TE~~g~~~~~~~~~~--~--~g~~~~~~~~~~~i~d~~~-g-------------~~-----~~~g~~Gel~v~~~t 297 (437)
T 2y27_A 241 IYGLSEVMGPGVASECVET--K--DGPTIWEDHFYPEIIDPET-G-------------EV-----LPDGELGELVFTSLT 297 (437)
T ss_dssp EEEETTTTEEEEEECCTTT--C--SSCEECTTTEEEEEECTTT-C-------------CB-----CCTTCCEEEEEEESS
T ss_pred cCCchhhcCCeeEEecCCC--C--CceeEccCceEEEEEcCCC-C-------------CC-----CCCCCccEEEEecCC
Confidence 9999994 3 55543221 1 1355555668889987442 1 22 578999999999755
Q ss_pred c----eeccccCCEEEecc
Q 012549 421 G----KSFISISIKIPISM 435 (461)
Q Consensus 421 G----LyRYriGDvV~v~g 435 (461)
. +.||++||++++..
T Consensus 298 ~~~~~~~~y~TGDl~~~~~ 316 (437)
T 2y27_A 298 KEALPIIRYRTRDLTRLLP 316 (437)
T ss_dssp CSSSCCCSEEEEEEECEEC
T ss_pred cCCchhheeecCCEEEEeC
Confidence 4 67999999999984
No 6
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.58 E-value=5.2e-14 Score=145.87 Aligned_cols=284 Identities=18% Similarity=0.143 Sum_probs=163.8
Q ss_pred hcHHHHHHHHHHHHHHh-cCCChHHHHhhcCccCCCCCCCcChHHhhhcCCCcccccchHHHHHHhcCCCCCcccCcccc
Q 012549 29 ENAGEVQRETLRRILEQ-NYDVEYLKKRLGDTKIQDMDACEMETLYTSLVPLASHADLEPYIQRIADGDTASLLTQEPIT 107 (461)
Q Consensus 29 ~~~~~~Q~~~L~~iL~~-na~T~ygr~~~~~~~~~~f~~i~s~edFr~~VPl~tYed~~pyIeRi~~Ge~~~vl~~~pi~ 107 (461)
++.++.|.+.|+++|+. .++++|+++++. ..+.....+++++|++ ++|+++|++++.... .+- .-..++.+.
T Consensus 23 ~~~~~~q~~~l~~~l~~a~~~~~~y~~~~~-~~~~~~~~i~~~~dl~-~lP~~~~~~l~~~~p---~~~--~~~~~~~~~ 95 (443)
T 2y4o_A 23 DELQALQLERLKWSLRHAYDNVPHYRRTFD-AAGVHPDDLKSLADLA-KFPFSTKNDLRDNYP---FGL--FAVPREQVV 95 (443)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHH-HHTCCGGGCCSGGGGG-GSCCBCHHHHHTTTT---TTT--CSSCGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHH-HcCCChhhCCCHHHHH-HCCCCcHHHHHhhCC---Ccc--cCCChhheE
Confidence 45678999999999996 689999999865 3344556788999998 699999998864221 010 112344555
Q ss_pred eeecccCCCCCcccccccChhcHHHHHHHHHHHHHHHHhcCCCCCCCcEEEEEecCCccccCCCceeeccccccccchhH
Q 012549 108 KLSLSSGTTEGRQKYVPFTKHSSQTTLQIFRLAAAYRSRVYPIREGGRILEFIYSSKQFKTKGGLTAGTATTHYYASEEF 187 (461)
Q Consensus 108 ~f~~TSGTT~G~~K~IP~T~~~~~~~~~~~~~~~~~~~~~~p~~~~gk~l~~~~~~~~~~t~~Gi~~G~~S~~~~~~~~f 187 (461)
+...||||| |+||-+++|++.+........ .....+++..+.+.+.+ . + -+.-.+. ..
T Consensus 96 ~i~~TSGTT-G~PK~v~~t~~~~~~~~~~~~----~~~~~~~~~~~d~~l~~-~-~------~~~~~~~---~~------ 153 (443)
T 2y4o_A 96 RVHASSGTT-GKPTVVGYTARDIDTWANVTA----RSIRAAGGRPGDTLHNA-F-G------YGLFTGG---LG------ 153 (443)
T ss_dssp EEEEECCSS-SSCEEEEECHHHHHHHHHHHH----HHHHHTTCCTTCEEEEC-S-C------CSSSHHH---HH------
T ss_pred EEEECCCCC-CCceEEecCHHHHHHHHHHHH----HHHHHcCCCCCCEEEEe-c-c------CcccccH---HH------
Confidence 788999999 899999999987654332211 11112444423443321 1 0 0000000 00
Q ss_pred HhhhhhhccccCCchhhhccCChhhhHHHHHHhcccCCCCeeEEE-ecchHHHHHHHHHHHHHHHHHHHHHHcccCCCCC
Q 012549 188 KIKQEKTKSFTCSPEEVISSGEYKQSTYCHLLLGLFFSDQVEFIT-STFAYSIVQAFTAFEECWQDICIDVREGSLSSSR 266 (461)
Q Consensus 188 ~~~~~~~~~~~~~P~ev~~~~d~~~~~Y~~Ll~aL~~~~~l~~i~-~~f~~~ll~~~~~l~~~w~~l~~dI~~Gt~~~~~ 266 (461)
..+..++.|. ..+. ..+ +.+++++.|++..+.
T Consensus 154 -------------------------~~~~~~~~G~------~~~~~~~~-------------~~~~~~~~i~~~~~t--- 186 (443)
T 2y4o_A 154 -------------------------IHYGAERLGC------MVVPMSGG-------------QTEKQVQLIRDFEPK--- 186 (443)
T ss_dssp -------------------------HHHHHHHHTC------EEECCCSC-------------CHHHHHHHHHHHCCS---
T ss_pred -------------------------HHHHHHHcCC------EEEECCCC-------------CHHHHHHHHHHhCCc---
Confidence 0001111111 1111 101 223445555555554
Q ss_pred CCcHHHHHhhcccCCCcHHHHHHHHHHhcccccCCccCcccCCCCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccC
Q 012549 267 ITLPKMRKAVLDTISPKPYLASKIEVACKKLESLDWFGLVPKLWPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSA 343 (461)
Q Consensus 267 i~~~~~r~~l~~~l~~~p~~A~~L~~~~~~~~~~~~~gi~~~lWP~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~~~ 343 (461)
. +.+. |..+..|.+...+ . ++-. -+++++ .+++|+ ....++++++.+ ++++. .
T Consensus 187 --~------l~~~----Ps~~~~l~~~~~~-~-----~~~~-~~~~lr---~i~~gGe~l~~~~~~~~~~~~-g~~v~-~ 242 (443)
T 2y4o_A 187 --I------ILVT----PSYMLNLIDEMVR-Q-----GMDP-AESSLK---IGIFGAEPWTQALRNEVETRV-GIDAL-D 242 (443)
T ss_dssp --E------EEEC----HHHHHHHHHHHHH-T-----TCCG-GGSSCC---EEEEESSCCCHHHHHHHHHHH-TCEEE-E
T ss_pred --E------EEEC----HHHHHHHHHHHHH-c-----CCCc-ccCCce---EEEECCCcCCHHHHHHHHHHh-CcCEE-e
Confidence 2 2222 3334444333222 1 1111 145788 444444 666788888888 68888 9
Q ss_pred ccccCce--e-EEeeCCCCCCCCCceeeeeCCceEEEEeecCccccCCCCCCCCCCCCcccccCCCcCCCeEEEEEeccC
Q 012549 344 DYGSTES--W-IGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFT 420 (461)
Q Consensus 344 ~Y~aSEg--~-igi~~~~~~~~~~~~~~l~p~~~ffEFip~~~~~~~~~~~~~~~~~~~~l~l~Ele~G~~YelVvTt~~ 420 (461)
.||+||+ . ++...... + .++.+......+|.++.+. .+. |..|+.+||+||+..
T Consensus 243 ~YG~TE~~g~~~~~~~~~~-~---~g~~~~~~~~~~~i~d~~~--------------g~~-----~~~G~~Gel~v~~~t 299 (443)
T 2y4o_A 243 IYGLSEVMGPGVACECVET-K---DGPVIWEDHFYPEIIDPVT--------------GEV-----LPDGSQGELVFTSLT 299 (443)
T ss_dssp EEEETTTTEEEEEEECTTT-C---CSEEECTTTEEEEEECTTT--------------CCB-----CCTTCCEEEEEEESS
T ss_pred ccCchhhcCCeEEeccCCC-C---CceEEccCCeEEEEEcCCC--------------CCC-----CCCCCceEEEEeCCC
Confidence 9999994 3 55543221 1 2455555668889887432 122 578999999999754
Q ss_pred c----eeccccCCEEEecc
Q 012549 421 G----KSFISISIKIPISM 435 (461)
Q Consensus 421 G----LyRYriGDvV~v~g 435 (461)
. +.||++||++++..
T Consensus 300 ~~~~p~~~y~TGDl~~~~~ 318 (443)
T 2y4o_A 300 KEAMPVIRYRTRDLTALLP 318 (443)
T ss_dssp CSSSCCSSEEEEEEECEEC
T ss_pred cccChhheeecCCEEEEcC
Confidence 3 56999999999883
No 7
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.43 E-value=2.5e-13 Score=137.41 Aligned_cols=91 Identities=13% Similarity=0.036 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHh-cC---CChHHHHhhcCccCCCC-CCCcChHHhhhcCCCcccccchH-HHHHHhcCCCCCcccCcccc
Q 012549 34 VQRETLRRILEQ-NY---DVEYLKKRLGDTKIQDM-DACEMETLYTSLVPLASHADLEP-YIQRIADGDTASLLTQEPIT 107 (461)
Q Consensus 34 ~Q~~~L~~iL~~-na---~T~ygr~~~~~~~~~~f-~~i~s~edFr~~VPl~tYed~~p-yIeRi~~Ge~~~vl~~~pi~ 107 (461)
.+++.|+++++. .. +++|+|+++. ..+.+. ..|++.+|++ ++|+++ ++++. +.+.+.. .. +.++.+.
T Consensus 22 ~~~~~l~~~~~~~~~~~~~~p~Yr~~~~-~~g~~p~~~i~~~~dl~-~lP~~~-~~l~~~~~~~~~p---~~-~~~~~~a 94 (369)
T 3hgu_A 22 DTNNFVQALMRWHFSKETGSPFWLGMRE-QLNFDPIKDVKTINDLR-QFSDIS-HCLRQEPVANLVP---QG-LPADSHP 94 (369)
T ss_dssp CHHHHHHHHHHHHHSTTTSCHHHHHHGG-GSSSCHHHHCCSTGGGG-GSCCCG-GGGTTSCGGGGSC---TT-SCTTCCC
T ss_pred CHHHHHHHHHHHHcCCCCCCHHHHHHHH-hcCCChhHhCCCHHHHh-hCCCch-hhhhcCCHHHcCC---cc-CCccccE
Confidence 467788999985 66 8999999966 334444 5788999998 599999 99865 3222211 01 1345566
Q ss_pred eeecccCCCCCcccccccChhcHHH
Q 012549 108 KLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 108 ~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
+...||||| |+||-+.+|++.+..
T Consensus 95 ~i~~TSGTT-G~PKgv~~t~~~~~~ 118 (369)
T 3hgu_A 95 QVYESGGTT-GAPKYVVAYDAWIEA 118 (369)
T ss_dssp EEEEECC----CCEEEEECHHHHHH
T ss_pred EEEECCCCC-CCCCEEEECHHHHHH
Confidence 889999999 999999999886544
No 8
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=98.26 E-value=7.5e-06 Score=85.85 Aligned_cols=97 Identities=12% Similarity=0.107 Sum_probs=61.9
Q ss_pred CCCceEEEEEcCChHHHHHHHHhHhCCCCcccCccccCcee-E-EeeCCCCCCCCCceeeeeCCceEEEEeecCccccCC
Q 012549 311 PNAKYVYSIMTGSMQHYLKKLRHYAGDLPLVSADYGSTESW-I-GVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQDC 388 (461)
Q Consensus 311 P~L~~v~~~~~G~~~~y~~~l~~~~~~vpi~~~~Y~aSEg~-i-gi~~~~~~~~~~~~~~l~p~~~ffEFip~~~~~~~~ 388 (461)
+.++ .+.+|+...-++++++.+++++++ ..||.||+. + ........ +...+. ..|+ .-++.++.+
T Consensus 272 ~~lr---~~~~~g~~~~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~-~~~~G~-p~~~-~~~~i~d~~------ 338 (509)
T 3ivr_A 272 ASLR---AVTGLDTPETIERFEATCPNATFW-ATFGQSETSGLSTFAPYRDR-PKSAGR-PLFW-RTVAVVDAE------ 338 (509)
T ss_dssp TTCC---EEEEECCHHHHHHHHHHCTTCEEE-EEEEEGGGTEEEEEEEGGGS-TTSCCE-ECTT-CEEEEECTT------
T ss_pred hhhh---eecccCChHHHHHHHHhcCCCeEE-cccCccccccccccCccccC-CCcccc-cCCC-cEEEEECCC------
Confidence 4667 555666557778888888899988 999999983 3 22221111 111233 3333 333444322
Q ss_pred CCCCCCCCCCcccccCCCcCCCeEEEEEec---cCceec-------------cccCCEEEec
Q 012549 389 NSAIDDFIEDEPVPLSQVKLGQEYEIVLTS---FTGKSF-------------ISISIKIPIS 434 (461)
Q Consensus 389 ~~~~~~~~~~~~l~l~Ele~G~~YelVvTt---~~GLyR-------------YriGDvV~v~ 434 (461)
.+ +|..|+.+||+|+. ..|.|+ ||+||++++.
T Consensus 339 ---------~~-----~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~ 386 (509)
T 3ivr_A 339 ---------DR-----PLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFD 386 (509)
T ss_dssp ---------SC-----BCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEEC
T ss_pred ---------CC-----CCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEEC
Confidence 12 36899999999986 345665 9999999996
No 9
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=98.12 E-value=6.1e-05 Score=79.97 Aligned_cols=100 Identities=13% Similarity=0.074 Sum_probs=61.5
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcee-E-EeeCCCCCCCCCceeeeeCCceEEEEeecCcc
Q 012549 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESW-I-GVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRR 384 (461)
Q Consensus 310 WP~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~~~~Y~aSEg~-i-gi~~~~~~~~~~~~~~l~p~~~ffEFip~~~~ 384 (461)
+++|+ .+.+|+ ....++++++.++++++. .+||.||+. + ..+.......+..+. ..|+ .-.+.++.++
T Consensus 308 l~~lr---~i~~gG~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-~~~~-~~~~i~d~~~- 380 (548)
T 2d1s_A 308 LSNLV---EIASGGAPLSKEVGEAVARRFNLPGVR-QGYGLTETTSAIIITPEGDDKPGASGK-VVPL-FKAKVIDLDT- 380 (548)
T ss_dssp CTTCC---EEEECSSCCCHHHHHHHHHHTTCSCCE-EEEECGGGSSEEEECCTTCCCTTCCBE-ECTT-CEEEEECTTT-
T ss_pred cccee---EEEEcCccCCHHHHHHHHHHcCCCcee-eccccccccceeeecCcccCCCCCCCc-cCCC-ceEEEEeCCc-
Confidence 46777 455555 566677888888888888 999999983 3 333222122222333 2333 3344444221
Q ss_pred ccCCCCCCCCCCCCcccccCCCcCCCeEEEEEeccC---cee--------------ccccCCEEEec
Q 012549 385 KQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSFT---GKS--------------FISISIKIPIS 434 (461)
Q Consensus 385 ~~~~~~~~~~~~~~~~l~l~Ele~G~~YelVvTt~~---GLy--------------RYriGDvV~v~ 434 (461)
.+ .|.+|+..||+|+... |.| .||+||++++.
T Consensus 381 -------------~~-----~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~ 429 (548)
T 2d1s_A 381 -------------KK-----SLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYD 429 (548)
T ss_dssp -------------CC-----BCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEEC
T ss_pred -------------Cc-----cCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEc
Confidence 12 2678999999998632 222 49999999997
No 10
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=98.07 E-value=5.8e-05 Score=79.22 Aligned_cols=102 Identities=19% Similarity=0.166 Sum_probs=60.6
Q ss_pred cCCCCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCceeE-Ee--eCCC----CCCCCCceeeeeCCceEE
Q 012549 307 PKLWPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWI-GV--NVDP----SLPPEDVTFAVIPTFSYF 376 (461)
Q Consensus 307 ~~lWP~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~~~~Y~aSEg~i-gi--~~~~----~~~~~~~~~~l~p~~~ff 376 (461)
....+.++ .+.+|+ ...-.+++++.+++++++ ..||.||+.. .. .... .......+. ..|+. -+
T Consensus 256 ~~~~~~l~---~~~~~G~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~~-~~ 329 (511)
T 3e7w_A 256 QDLLPHAD---TFMFCGEVLPVSVAKALLERFPKAKIF-NTYGPTEATVAVTSVEITNDVISRSESLPVGF-AKPDM-NI 329 (511)
T ss_dssp TTTCTTCC---EEEECSSCCCHHHHHHHHHHCTTCEEE-ECCCCGGGSSCSEEEEECHHHHTTCSSCCCBE-ECTTC-EE
T ss_pred cccCCccc---EEEEecCCCCHHHHHHHHHHCCCcEEE-eCcccchheeeeeEEeccccccccCCcCCCcc-eeCCC-EE
Confidence 34566787 444444 566677888888889998 9999999732 21 1111 111111222 23332 23
Q ss_pred EEeecCccccCCCCCCCCCCCCcccccCCCcCCCeEEEEEecc--------------------CceeccccCCEEEec
Q 012549 377 EFIPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSF--------------------TGKSFISISIKIPIS 434 (461)
Q Consensus 377 EFip~~~~~~~~~~~~~~~~~~~~l~l~Ele~G~~YelVvTt~--------------------~GLyRYriGDvV~v~ 434 (461)
+.++.+ .+ .|..|+..||+|+.. .|-|.||+||++++.
T Consensus 330 ~i~d~~---------------g~-----~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~~ 387 (511)
T 3e7w_A 330 FIMDEE---------------GQ-----PLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQ 387 (511)
T ss_dssp EEECTT---------------SC-----BCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEEE
T ss_pred EEECCC---------------CC-----CCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEcc
Confidence 334321 12 367899999999842 233469999999874
No 11
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=98.04 E-value=2.8e-05 Score=83.41 Aligned_cols=98 Identities=14% Similarity=0.251 Sum_probs=59.6
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCceeEEeeC--CCCCCCCCceeeeeCCceEEEEeecCcc
Q 012549 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWIGVNV--DPSLPPEDVTFAVIPTFSYFEFIPIHRR 384 (461)
Q Consensus 310 WP~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~~~~Y~aSEg~igi~~--~~~~~~~~~~~~l~p~~~ffEFip~~~~ 384 (461)
+++|+ .+++|+ ...-++++++.+ +++++ .+||.||+.+.+.. .....++..+. ..|+. -++.++.+
T Consensus 340 l~~lr---~i~~gGe~l~~~~~~~~~~~~-g~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-p~~~~-~v~ivd~~-- 410 (580)
T 3etc_A 340 FSTLK---YAVVAGEPLNPEVFNRFLEFT-GIKLM-EGFGQTETVVTIATFPWMEPKPGSIGK-PTPGY-KIELMDRD-- 410 (580)
T ss_dssp CTTCC---EEEECSSCCCHHHHHHHHHHH-SCCCE-EEECCTTSSCCEECCTTSCCCTTCCBE-ECTTC-EEEEECTT--
T ss_pred Cccce---EEEEccCCCCHHHHHHHHHHh-CCeEe-cccccccccceeecCCCCCCCCCcccc-CCCCC-EEEEECCC--
Confidence 46788 555555 455556677767 67888 99999998432221 11222233333 33332 33444322
Q ss_pred ccCCCCCCCCCCCCcccccCCCcCCCeEEEEEecc----Cceec-----------------cccCCEEEec
Q 012549 385 KQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSF----TGKSF-----------------ISISIKIPIS 434 (461)
Q Consensus 385 ~~~~~~~~~~~~~~~~l~l~Ele~G~~YelVvTt~----~GLyR-----------------YriGDvV~v~ 434 (461)
.+ +|++|+.+||+|+.. .|+.+ ||+||++++.
T Consensus 411 -------------g~-----~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~d 463 (580)
T 3etc_A 411 -------------GR-----LCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMD 463 (580)
T ss_dssp -------------SC-----BCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEEC
T ss_pred -------------CC-----CCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEEEC
Confidence 12 368999999999863 23433 9999999986
No 12
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=98.00 E-value=6.9e-05 Score=78.62 Aligned_cols=100 Identities=14% Similarity=0.134 Sum_probs=58.7
Q ss_pred CCCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCceeE--Ee-eCCC----CCCCCCceeeeeCCceEEEE
Q 012549 309 LWPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWI--GV-NVDP----SLPPEDVTFAVIPTFSYFEF 378 (461)
Q Consensus 309 lWP~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~~~~Y~aSEg~i--gi-~~~~----~~~~~~~~~~l~p~~~ffEF 378 (461)
-.|.|+ .+..|+ ...-++++.+.+++++++ .+||+||+.. +. .... ....+..+. ..|+. -.+.
T Consensus 262 ~~~~lr---~~~~gG~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~-p~~~~-~~~i 335 (521)
T 3l8c_A 262 KMPALT---HFYFDGEELTVSTARKLFERFPSAKII-NAYGPTEATVALSAIEITREMVDNYTRLPIGY-PKPDS-PTYI 335 (521)
T ss_dssp TCTTCC---EEEECSSCCCHHHHHHHHHHCTTCEEE-EEECCGGGSSCSEEEEECHHHHHHCSSCEEEE-ECTTS-CEEE
T ss_pred cCccce---EEEEecccCCHHHHHHHHHHCCCceEE-eCcCccHHhhhhceeecccccccCCCcccccc-ccCCC-EEEE
Confidence 356777 444444 555667777788889998 9999999742 21 1110 001111222 22332 2233
Q ss_pred eecCccccCCCCCCCCCCCCcccccCCCcCCCeEEEEEec---cCcee-----------------ccccCCEEEec
Q 012549 379 IPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTS---FTGKS-----------------FISISIKIPIS 434 (461)
Q Consensus 379 ip~~~~~~~~~~~~~~~~~~~~l~l~Ele~G~~YelVvTt---~~GLy-----------------RYriGDvV~v~ 434 (461)
++++ . .+|..|+..||+|+. ..|.| -|++||++++.
T Consensus 336 ~d~~---------------g-----~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d 391 (521)
T 3l8c_A 336 IDED---------------G-----KELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLT 391 (521)
T ss_dssp ECTT---------------S-----CBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEEC
T ss_pred ECCC---------------c-----CCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEe
Confidence 3311 1 236889999999987 23433 29999999997
No 13
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=97.98 E-value=0.00015 Score=76.71 Aligned_cols=100 Identities=15% Similarity=0.127 Sum_probs=59.7
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcee--EEeeCCCCCCCCCceeeeeCCceEEEEeecCcc
Q 012549 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESW--IGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRR 384 (461)
Q Consensus 310 WP~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~~~~Y~aSEg~--igi~~~~~~~~~~~~~~l~p~~~ffEFip~~~~ 384 (461)
+++|+ .+.+|+ ....++++++.++...+. ..||.||+. +..+......++..+. ..|+ .-.+.++.+.
T Consensus 306 l~~lr---~i~~gG~~l~~~~~~~~~~~~~~~~v~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-~~~~-~~~~i~d~~~- 378 (550)
T 3rix_A 306 LSNLH---EIASGGAPLSKEVGEAVAKRFHLPGIR-QGYGLTETTSAILITPEGDDKPGAVGK-VVPF-FEAKVVDLDT- 378 (550)
T ss_dssp CTTCC---EEEECSSCCCHHHHHHHHHHTTCSCCE-EEEECGGGSSEEEECCTTCCCTTEEEE-ECTT-CEEEEECTTT-
T ss_pred ccccc---EEEEecCCCCHHHHHHHHHHcCCCccc-cccCcCccccceecCCCCCCCCCCccc-ccCC-cEEEEEeCCC-
Confidence 56788 555555 556667787778553466 999999984 3333222222232332 2333 3344454321
Q ss_pred ccCCCCCCCCCCCCcccccCCCcCCCeEEEEEecc---Ccee--------------ccccCCEEEec
Q 012549 385 KQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSF---TGKS--------------FISISIKIPIS 434 (461)
Q Consensus 385 ~~~~~~~~~~~~~~~~l~l~Ele~G~~YelVvTt~---~GLy--------------RYriGDvV~v~ 434 (461)
.. .|..|+..||+|+.. .|.| .||+||++++.
T Consensus 379 -------------~~-----~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~ 427 (550)
T 3rix_A 379 -------------GK-----TLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWD 427 (550)
T ss_dssp -------------CC-----BCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEEC
T ss_pred -------------Cc-----CCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEe
Confidence 12 268899999999852 2322 29999999986
No 14
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=97.96 E-value=6.5e-05 Score=78.66 Aligned_cols=100 Identities=16% Similarity=0.043 Sum_probs=58.8
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCceeEEeeCCCCCCCCCceeeeeCCceEEEEeecCcccc
Q 012549 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQ 386 (461)
Q Consensus 310 WP~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~~~~Y~aSEg~igi~~~~~~~~~~~~~~l~p~~~ffEFip~~~~~~ 386 (461)
.++|+ .+.+|+ ....++++++.+| +++. ..||.||+.+.+.... ...+..+. ..|+. -...++.+ +
T Consensus 271 l~~lr---~~~~gG~~l~~~~~~~~~~~~~-~~~~-~~YG~TE~~~~~~~~~-~~~~~~g~-p~~~~-~~~i~~~~--~- 339 (504)
T 1t5h_X 271 LDSLR---HVTFAGATMPDAVLETVHQHLP-GEKV-NIYGTTEAMNSLYMRQ-PKTGTEMA-PGFFS-EVRIVRIG--G- 339 (504)
T ss_dssp CTTCC---EEEECCTTCCHHHHHHHHHHCC-SEEE-EEEEETTTEEEEEEES-CSSSSEEB-CCTTC-CEEEECTT--S-
T ss_pred Ccccc---EEEEcCCcCCHHHHHHHHHhcC-ccee-eeeccccccccccccC-CCCCcccc-CCCCC-ceeEEecc--C-
Confidence 46788 555555 5556677777774 5777 8999999854443211 11121111 12221 12223321 1
Q ss_pred CCCCCCCCCCCCcccccCCCcCCCeEEEEEe-c---cCceec-------------cccCCEEEec
Q 012549 387 DCNSAIDDFIEDEPVPLSQVKLGQEYEIVLT-S---FTGKSF-------------ISISIKIPIS 434 (461)
Q Consensus 387 ~~~~~~~~~~~~~~l~l~Ele~G~~YelVvT-t---~~GLyR-------------YriGDvV~v~ 434 (461)
... ..|..|+.+||+|+ . ..|.|+ ||+||++++.
T Consensus 340 ---------~~~-----~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~ 390 (504)
T 1t5h_X 340 ---------GVD-----EIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWT 390 (504)
T ss_dssp ---------CTT-----CBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEEC
T ss_pred ---------CCC-----CcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEEC
Confidence 111 23789999999998 3 246665 9999999997
No 15
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=97.95 E-value=0.00014 Score=76.28 Aligned_cols=100 Identities=15% Similarity=0.130 Sum_probs=58.5
Q ss_pred CCCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCceeEEee--CCCCCCCCCceeeeeCCceEEEEeecCc
Q 012549 309 LWPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWIGVN--VDPSLPPEDVTFAVIPTFSYFEFIPIHR 383 (461)
Q Consensus 309 lWP~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~~~~Y~aSEg~igi~--~~~~~~~~~~~~~l~p~~~ffEFip~~~ 383 (461)
..++++ .+.+|+ ...-.+++++.+ +++++ ..||.||+.+... .+....++..+. ..|+ .-.+.++.+
T Consensus 266 ~~~~lr---~~~~gg~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-p~~~-~~~~i~d~~- 337 (503)
T 4fuq_A 266 TTGHMR---LFISGSAPLLADTHREWSAKT-GHAVL-ERYGMTETNMNTSNPYDGDRVPGAVGP-ALPG-VSARVTDPE- 337 (503)
T ss_dssp TTTTCC---EEEECSSCCCHHHHHHHHHHH-SCCEE-ECCEETTTEECBCCCSSSCCCTTEEEE-BCTT-CEEEEECTT-
T ss_pred chhhcE---EEEECCCCCCHHHHHHHHHHh-CCCcc-ceEcccccCcccccCCCCCCcCCcccc-CCCC-eEEEEEECC-
Confidence 356777 555555 455556677767 56887 9999999854321 111111222222 2233 223344322
Q ss_pred cccCCCCCCCCCCCCcccccCCCcCCCeEEEEEec---cCceec--------------cccCCEEEec
Q 012549 384 RKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTS---FTGKSF--------------ISISIKIPIS 434 (461)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~l~Ele~G~~YelVvTt---~~GLyR--------------YriGDvV~v~ 434 (461)
+.+ +|..|+..||+|+. ..|.|. ||+||++++.
T Consensus 338 -------------~g~-----~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~ 387 (503)
T 4fuq_A 338 -------------TGK-----ELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKID 387 (503)
T ss_dssp -------------TCC-----BCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEEC
T ss_pred -------------CCC-----CCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEc
Confidence 112 36899999999985 234432 9999999986
No 16
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=97.87 E-value=2.7e-05 Score=82.27 Aligned_cols=101 Identities=16% Similarity=0.165 Sum_probs=61.0
Q ss_pred CCCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcee--EEeeCC----C-CCCCCCceeeeeCCceEEEE
Q 012549 309 LWPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESW--IGVNVD----P-SLPPEDVTFAVIPTFSYFEF 378 (461)
Q Consensus 309 lWP~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~~~~Y~aSEg~--igi~~~----~-~~~~~~~~~~l~p~~~ffEF 378 (461)
-.++|+ .+.+|+ ...-.+++++.++++++. ..||.||+. ++.+.. + ...++..+. ..|+ .-++.
T Consensus 295 ~l~~lr---~i~~gGe~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~-~~~~i 368 (536)
T 3ni2_A 295 DLSSLR---MIKSGGAPLGKELEDTVRAKFPQARLG-QGYGMTEAGPVLAMCLAFAKEPFDIKPGACGT-VVRN-AEMKI 368 (536)
T ss_dssp CCTTCC---EEEEESSCCCHHHHHHHHHHCTTSEEE-EEEECGGGSSEEEECGGGSSSCCCCCTTCCCE-ECSS-CEEEE
T ss_pred CCccce---EEEECCCCCCHHHHHHHHHHCCCCCcc-ccccccccchhhhcccccCCccccCCCCCeeE-eCCC-cEEEE
Confidence 356788 555555 556677788888888988 999999983 333311 1 111222232 2233 23344
Q ss_pred eecCccccCCCCCCCCCCCCcccccCCCcCCCeEEEEEecc---Ccee--------------ccccCCEEEec
Q 012549 379 IPIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSF---TGKS--------------FISISIKIPIS 434 (461)
Q Consensus 379 ip~~~~~~~~~~~~~~~~~~~~l~l~Ele~G~~YelVvTt~---~GLy--------------RYriGDvV~v~ 434 (461)
++.+ +.. .|..|+.+||+|+.. .|.| .||+||++++.
T Consensus 369 ~d~~--------------~~~-----~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~ 422 (536)
T 3ni2_A 369 VDPE--------------TGA-----SLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYID 422 (536)
T ss_dssp ECTT--------------TCC-----BCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEEC
T ss_pred EeCC--------------CCc-----CCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEc
Confidence 4422 112 267899999999842 2332 29999999986
No 17
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=97.86 E-value=0.00011 Score=77.13 Aligned_cols=40 Identities=23% Similarity=0.320 Sum_probs=29.8
Q ss_pred CCCCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcee
Q 012549 308 KLWPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESW 351 (461)
Q Consensus 308 ~lWP~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~~~~Y~aSEg~ 351 (461)
...|+++ .+.+|+ ...-.+++++.+++++++ ..||+||+.
T Consensus 258 ~~~~~lr---~~~~~G~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~ 300 (512)
T 3fce_A 258 SMLPNMK---TFLFCGEVLPNEVARKLIERFPKATIM-NTYGPTEAT 300 (512)
T ss_dssp TTSTTCC---EEEECSSCCCHHHHHHHHHHCTTCEEE-EEECCGGGS
T ss_pred hhCcccc---EEEEecCcCCHHHHHHHHHHCCCCEEE-eCcccChhh
Confidence 3456788 444444 556667788888889998 999999984
No 18
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=97.81 E-value=8e-05 Score=78.81 Aligned_cols=99 Identities=11% Similarity=0.117 Sum_probs=57.8
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCceeEEeeCCCCCC---CCCceeeeeCCceEEEEeecCc
Q 012549 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLP---PEDVTFAVIPTFSYFEFIPIHR 383 (461)
Q Consensus 310 WP~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~~~~Y~aSEg~igi~~~~~~~---~~~~~~~l~p~~~ffEFip~~~ 383 (461)
.++|+ .+.+|+ ....++++++.+ ++++. ..||.||+.+.+....... .+..+. ..++..-...++.+
T Consensus 297 l~~lr---~~~~gG~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~-p~~~~~~~~i~d~~- 369 (539)
T 1mdb_A 297 LSSLQ---VLQVGGAKFSAEAARRVKAVF-GCTLQ-QVFGMAEGLVNYTRLDDPEEIIVNTQGK-PMSPYDESRVWDDH- 369 (539)
T ss_dssp CTTCC---EEEEESSCCCHHHHTTHHHHT-CSEEE-EEEECTTSCEEECCTTSCHHHHHHCCCE-ESSTTCEEEEECTT-
T ss_pred cccee---EEEEcCCCCCHHHHHHHHHHh-CCcEE-EEEcCCCCcccccCCCCcHHhcCCCCCc-ccCCCceEEEECCC-
Confidence 46788 445444 455566677777 57887 9999999866543221100 011122 22222223333311
Q ss_pred cccCCCCCCCCCCCCcccccCCCcCCCeEEEEEecc---Ccee--------------ccccCCEEEec
Q 012549 384 RKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSF---TGKS--------------FISISIKIPIS 434 (461)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~l~Ele~G~~YelVvTt~---~GLy--------------RYriGDvV~v~ 434 (461)
.+ +|..|+.+||+|+.. .|.| .||+||++++.
T Consensus 370 --------------~~-----~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~ 418 (539)
T 1mdb_A 370 --------------DR-----DVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLT 418 (539)
T ss_dssp --------------SC-----BCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEEC
T ss_pred --------------CC-----CCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEEC
Confidence 12 368899999999763 2322 39999999997
No 19
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=97.80 E-value=0.00013 Score=77.24 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=22.2
Q ss_pred cccceeecccCCCCCcccccccChhcHHH
Q 012549 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
+.+.+...||||| |+||-+..|++.+..
T Consensus 180 ~d~a~i~~TSGTT-G~PKgV~~sh~~l~~ 207 (549)
T 3g7s_A 180 EDVALIPYTGGTT-GMPKGVMLTHFNLAA 207 (549)
T ss_dssp TSEEECCEECCCC-C-CEEEEEEHHHHHH
T ss_pred CCEEEEEECCCcc-CCCceEEEcHHHHHH
Confidence 4455888999999 999999999986644
No 20
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=97.76 E-value=0.00011 Score=78.07 Aligned_cols=29 Identities=28% Similarity=0.262 Sum_probs=23.5
Q ss_pred CcccceeecccCCCCCcccccccChhcHHH
Q 012549 103 QEPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 103 ~~pi~~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
++-+.+...||||| |+||-+..|++.+..
T Consensus 166 ~~d~a~i~~TSGTT-G~PKgV~~th~~l~~ 194 (590)
T 3kxw_A 166 SNDIAFLQYTSGST-MHPKGVMVSHHNLLD 194 (590)
T ss_dssp TTSEEEEEECSSCS-SSCCEEEEEHHHHHH
T ss_pred CCCeEEEEeCcCCC-CCceEEEeeHHHHHH
Confidence 33455889999999 999999999986644
No 21
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=97.70 E-value=0.0001 Score=77.64 Aligned_cols=96 Identities=13% Similarity=-0.016 Sum_probs=59.3
Q ss_pred CCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCce-eEEe-eCCCCCCCCCceeeeeCCceEEEEeecCcccc
Q 012549 312 NAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTES-WIGV-NVDPSLPPEDVTFAVIPTFSYFEFIPIHRRKQ 386 (461)
Q Consensus 312 ~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~~~~Y~aSEg-~igi-~~~~~~~~~~~~~~l~p~~~ffEFip~~~~~~ 386 (461)
.++ .+.+|+ ....++++++.+ +++++ .+||+||+ .+.+ +....+..+..+. ..|+ .-++.++.+
T Consensus 301 ~lr---~~~~gGe~l~~~~~~~~~~~~-g~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-p~~~-~~~~i~d~~---- 369 (529)
T 2v7b_A 301 AIR---ICTSAGEALPREIGERFTAHF-GCEIL-DGIGSTEMLHIFLSNRAGAVEYGTTGR-PVPG-YEIELRDEA---- 369 (529)
T ss_dssp CCC---EEEECSSCCCHHHHHHHHHHH-SCCEE-EEEECTTTSSEEEECCTTCCCTTSCCE-ECTT-CEEEEECTT----
T ss_pred ceE---EEEEcCCCCCHHHHHHHHHHh-CCcee-eeEchhhcCceeeccccCCCccCCccc-CCCC-CEEEEECCC----
Confidence 566 445454 556667777777 67888 99999997 3433 2222222222333 3333 334555421
Q ss_pred CCCCCCCCCCCCcccccCCCcCCCeEEEEEecc---Cceec-------------cccCCEEEec
Q 012549 387 DCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSF---TGKSF-------------ISISIKIPIS 434 (461)
Q Consensus 387 ~~~~~~~~~~~~~~l~l~Ele~G~~YelVvTt~---~GLyR-------------YriGDvV~v~ 434 (461)
.+ .|..|+.+||+|+.. .|.|+ |++||++++.
T Consensus 370 -----------g~-----~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~ 417 (529)
T 2v7b_A 370 -----------GH-----AVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRL 417 (529)
T ss_dssp -----------SC-----BCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEEC
T ss_pred -----------CC-----CCCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEEC
Confidence 12 367899999999873 45554 8999999987
No 22
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=97.70 E-value=5.9e-05 Score=79.93 Aligned_cols=98 Identities=8% Similarity=0.016 Sum_probs=57.1
Q ss_pred CCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCceeEEeeCCCCCC---CCCceeeeeCCceEEEEeecCcc
Q 012549 311 PNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLP---PEDVTFAVIPTFSYFEFIPIHRR 384 (461)
Q Consensus 311 P~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~~~~Y~aSEg~igi~~~~~~~---~~~~~~~l~p~~~ffEFip~~~~ 384 (461)
+.|+ .+.+|+ ....++++++.+ +++++ ..||.||+.+......... .+..+..+.+ ..-++.++.+
T Consensus 307 ~~lr---~i~~gG~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~-~~~~~i~d~~-- 378 (544)
T 3o83_A 307 QSLK---LLQVGGASFPESLARQVPEVL-NCKLQ-QVFGMAEGLVNYTRLDDSDEQIFTTQGRPISS-DDEIKIVDEQ-- 378 (544)
T ss_dssp TTCC---EEEEESSCCCHHHHTHHHHHH-CSEEE-EEEECTTSCEEECCTTSCHHHHHHCCCEESCT-TCEEEEECTT--
T ss_pred Ccce---EEEEcCCCCCHHHHHHHHHHh-CCcEE-eeeccccccceeecCCCchhhccCCCceecCC-CcEEEEECCC--
Confidence 4677 444444 555667777777 67888 9999999965432211110 0011221122 2333444311
Q ss_pred ccCCCCCCCCCCCCcccccCCCcCCCeEEEEEecc---Ccee--------------ccccCCEEEec
Q 012549 385 KQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSF---TGKS--------------FISISIKIPIS 434 (461)
Q Consensus 385 ~~~~~~~~~~~~~~~~l~l~Ele~G~~YelVvTt~---~GLy--------------RYriGDvV~v~ 434 (461)
.+ +|..|+.+||+|+.. .|.| .||+||++++.
T Consensus 379 -------------~~-----~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~ 427 (544)
T 3o83_A 379 -------------YR-----EVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRT 427 (544)
T ss_dssp -------------SC-----BCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEEC
T ss_pred -------------CC-----CCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEc
Confidence 12 368999999999873 2333 39999999987
No 23
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=97.68 E-value=0.00039 Score=73.66 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=19.8
Q ss_pred cceeecccCCCCCcccccccChhcHHHH
Q 012549 106 ITKLSLSSGTTEGRQKYVPFTKHSSQTT 133 (461)
Q Consensus 106 i~~f~~TSGTT~G~~K~IP~T~~~~~~~ 133 (461)
+.+...||||| |+||-+..|++.+...
T Consensus 177 ~a~i~~TSGTT-G~PKgV~~th~~l~~~ 203 (562)
T 3ite_A 177 DAYLLYTSGST-GTPKGVRVSRHNLSSF 203 (562)
T ss_dssp EEEEEEECC----CCEEEEEEHHHHHHH
T ss_pred cEEEEECCCCC-CCCcEEEECchhHHHH
Confidence 45788899999 9999999999876553
No 24
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=97.67 E-value=8.1e-05 Score=80.18 Aligned_cols=100 Identities=11% Similarity=0.069 Sum_probs=57.2
Q ss_pred CCCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCceeEEeeCCCCCCC---CCceeeeeCCceEEEEeecC
Q 012549 309 LWPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDPSLPP---EDVTFAVIPTFSYFEFIPIH 382 (461)
Q Consensus 309 lWP~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~~~~Y~aSEg~igi~~~~~~~~---~~~~~~l~p~~~ffEFip~~ 382 (461)
-.+.|+ .+.+|+ ....++++++.+ +++++ ..||.||+.+.......... ...+.-+.++ .-...++.
T Consensus 300 ~l~~lr---~i~~gGe~l~~~~~~~~~~~~-~~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~-~~~~i~d~- 372 (617)
T 3rg2_A 300 QLASLK---LLQVGGARLSATLAARIPAEI-GCQLQ-QVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPD-DEVWVADA- 372 (617)
T ss_dssp TTTTCC---EEEEESSCCCHHHHHHHHHHT-CSEEE-EEEEETTEEEEECCTTSCHHHHHHCCCEESCTT-CEEEEECT-
T ss_pred cCCCcc---EEEEcCCcCCHHHHHHHHHHh-CCcEE-EEeccCcceeecccCCCcccccccCCCccCCCC-ceEEEECC-
Confidence 356788 555555 555566677666 67887 99999999654332211100 0012212222 22223321
Q ss_pred ccccCCCCCCCCCCCCcccccCCCcCCCeEEEEEecc---Cceec--------------cccCCEEEec
Q 012549 383 RRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSF---TGKSF--------------ISISIKIPIS 434 (461)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~l~l~Ele~G~~YelVvTt~---~GLyR--------------YriGDvV~v~ 434 (461)
+.+ .|..|+..||+|+.. .|.|. ||+||+++..
T Consensus 373 --------------~~~-----~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~ 422 (617)
T 3rg2_A 373 --------------EGN-----PLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISID 422 (617)
T ss_dssp --------------TSC-----BCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEEC
T ss_pred --------------CCC-----CCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEc
Confidence 112 368999999999753 33332 9999999986
No 25
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=97.61 E-value=0.00032 Score=73.66 Aligned_cols=28 Identities=29% Similarity=0.270 Sum_probs=23.2
Q ss_pred ccceeecccCCCCCcccccccChhcHHHH
Q 012549 105 PITKLSLSSGTTEGRQKYVPFTKHSSQTT 133 (461)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~~~~~ 133 (461)
-+.+...||||| |+||-+..|++.+...
T Consensus 156 d~a~i~~TSGTT-G~PKgV~~sh~~l~~~ 183 (505)
T 3nyq_A 156 DPALVVYTSGTT-GPPKGAVIPRRALATT 183 (505)
T ss_dssp SEEEEEEECCSS-SSCEEEEEEHHHHHHH
T ss_pred CeEEEEeCCCCc-CCCCeEEEeHHHHHHH
Confidence 345889999999 9999999999876543
No 26
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=97.56 E-value=0.0005 Score=73.41 Aligned_cols=98 Identities=18% Similarity=0.240 Sum_probs=57.2
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCceeEEeeCCC--CCCCCCceeeeeCCceEEEEeecCcc
Q 012549 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESWIGVNVDP--SLPPEDVTFAVIPTFSYFEFIPIHRR 384 (461)
Q Consensus 310 WP~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~~~~Y~aSEg~igi~~~~--~~~~~~~~~~l~p~~~ffEFip~~~~ 384 (461)
.++|+ .+++|+ ....++++++.+ ++++. ..||.||+.+..-..+ ...++..+. ..|+ .-++.++.+
T Consensus 321 ~~~lr---~i~~gGe~l~~~~~~~~~~~~-g~~i~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~~~-~~v~i~d~~-- 391 (570)
T 3c5e_A 321 FPHLQ---NCVTVGESLLPETLENWRAQT-GLDIR-ESYGQTETGLTCMVSKTMKIKPGYMGT-AASC-YDVQIIDDK-- 391 (570)
T ss_dssp CTTCC---EEEEESSCCCHHHHHHHHHHH-SCCCE-EEEEETTTEEEEECCTTSCCCTTCCCE-ECTT-CCEEEECTT--
T ss_pred cccce---EEEEcCCcCCHHHHHHHHHHh-CCchh-hccchhhcccceecCcccccCCCcccc-cCCC-ceEEEECCC--
Confidence 46777 334333 555667777777 67888 9999999853322221 111222232 2233 223344311
Q ss_pred ccCCCCCCCCCCCCcccccCCCcCCCeEEEEEe-----c---cCcee-------------ccccCCEEEec
Q 012549 385 KQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLT-----S---FTGKS-------------FISISIKIPIS 434 (461)
Q Consensus 385 ~~~~~~~~~~~~~~~~l~l~Ele~G~~YelVvT-----t---~~GLy-------------RYriGDvV~v~ 434 (461)
.+ .|..|+..||+|+ . ..|.| .|++||++++.
T Consensus 392 -------------g~-----~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg~~d 444 (570)
T 3c5e_A 392 -------------GN-----VLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKD 444 (570)
T ss_dssp -------------SC-----BCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEEEEC
T ss_pred -------------CC-----CCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeEEEc
Confidence 12 3688999999998 2 23443 28999999987
No 27
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=97.56 E-value=0.001 Score=69.82 Aligned_cols=29 Identities=31% Similarity=0.294 Sum_probs=20.6
Q ss_pred CcccceeecccCCCCCcccccccChhcHHH
Q 012549 103 QEPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 103 ~~pi~~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
++-+.+...||||| |+||-+..|++.+..
T Consensus 169 ~~d~a~i~~TSGTT-G~PKgV~~sh~~l~~ 197 (517)
T 3r44_A 169 GDDNLFIMYTSGTT-GHPKGVVHTHESVHS 197 (517)
T ss_dssp TTSEEEEEEECC----CCEEEEEEHHHHHH
T ss_pred CCCeEEEEECCccc-ccCceeeeeHHHHHH
Confidence 34455889999999 999999999986644
No 28
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=97.56 E-value=0.00018 Score=76.05 Aligned_cols=28 Identities=25% Similarity=0.237 Sum_probs=22.9
Q ss_pred cccceeecccCCCCCcccccccChhcHHH
Q 012549 104 EPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
+-+.+...||||| |+||-+..|++.+..
T Consensus 176 ~d~a~i~~TSGTT-G~PKgV~~sh~~~~~ 203 (576)
T 3gqw_A 176 NDIAYLQYTSGST-RFPRGVIITHREVMA 203 (576)
T ss_dssp TSEEEEECTTSCS-SSCCCEEEEHHHHHH
T ss_pred CCeEEEEeCCCCC-CCCceEEeeHHHHHH
Confidence 3455889999999 999999999886543
No 29
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=97.53 E-value=0.00018 Score=81.61 Aligned_cols=100 Identities=13% Similarity=0.159 Sum_probs=59.8
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcee--EEeeCC----C-CCCCCCceeeeeCCceEEEEe
Q 012549 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESW--IGVNVD----P-SLPPEDVTFAVIPTFSYFEFI 379 (461)
Q Consensus 310 WP~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~~~~Y~aSEg~--igi~~~----~-~~~~~~~~~~l~p~~~ffEFi 379 (461)
.++|+ .+.+|+ ...-.+++++.++++++. ..||.||+. ++.... + ....+..+. ..|+ .-++.+
T Consensus 343 l~~lr---~~~~gg~~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~-p~~~-~~~~i~ 416 (979)
T 3tsy_A 343 LSSIR---VVKSGAAPLGKELEDAVNAKFPNAKLG-QGYGMTEAGPVLAMSLGFAKEPFPVKSGACGT-VVRN-AEMKIV 416 (979)
T ss_dssp CTTCC---EEEESSCCCCSSHHHHHHHHCTTCEEE-ECEECGGGCSEEEECGGGSSSCCCCCTTCCCE-ECSS-CEEEEE
T ss_pred ccceE---EEEEcCCCCCHHHHHHHHHHCCCCeEE-eeechhhhhHHHHhCCCCCCCccccCCCCcCc-ccCC-cEEEEE
Confidence 46777 555555 445567788888899998 999999984 333311 1 011121222 2333 223444
Q ss_pred ecCccccCCCCCCCCCCCCcccccCCCcCCCeEEEEEecc---Cceec--------------cccCCEEEec
Q 012549 380 PIHRRKQDCNSAIDDFIEDEPVPLSQVKLGQEYEIVLTSF---TGKSF--------------ISISIKIPIS 434 (461)
Q Consensus 380 p~~~~~~~~~~~~~~~~~~~~l~l~Ele~G~~YelVvTt~---~GLyR--------------YriGDvV~v~ 434 (461)
+.+. .+ .|..|+..||+|+.. .|.|. ||+||++++.
T Consensus 417 d~~~--------------~~-----~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~ 469 (979)
T 3tsy_A 417 DPDT--------------GD-----SLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLID 469 (979)
T ss_dssp CTTS--------------CC-----BCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEEC
T ss_pred eCCC--------------CC-----CCCCCCccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEc
Confidence 4221 12 367899999999842 23332 9999999987
No 30
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=97.40 E-value=0.0027 Score=66.10 Aligned_cols=29 Identities=38% Similarity=0.472 Sum_probs=23.2
Q ss_pred CcccceeecccCCCCCcccccccChhcHHH
Q 012549 103 QEPITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 103 ~~pi~~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
++-+.+...||||| |+||-+..|++.+..
T Consensus 162 ~~d~a~i~~TSGTT-G~PKgv~~th~~~~~ 190 (501)
T 3ipl_A 162 LDDIASIMFTSGTT-GPQKAVPQTFRNHYA 190 (501)
T ss_dssp TTSEEEEEECCTTT-SCCCEEEEEHHHHHH
T ss_pred CCCeEEEEECCCCC-CCCcEEEEeHHHHHH
Confidence 34455889999999 999999999886543
No 31
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=97.36 E-value=0.00097 Score=72.64 Aligned_cols=25 Identities=28% Similarity=0.211 Sum_probs=21.2
Q ss_pred ccceeecccCCCCCcccccccChhcH
Q 012549 105 PITKLSLSSGTTEGRQKYVPFTKHSS 130 (461)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~~ 130 (461)
-+.+...||||| |+||-+..|...+
T Consensus 263 d~a~ilyTSGTT-G~PKgV~~sh~~~ 287 (663)
T 1ry2_A 263 DPLFLLYTSGST-GAPKGVQHSTAGY 287 (663)
T ss_dssp SCCEEEEECCSS-SSCEEEEECSHHH
T ss_pred CceEEEeccCCC-CCCceEEEchhHH
Confidence 344889999999 9999999998854
No 32
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=97.34 E-value=0.0021 Score=68.44 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=17.1
Q ss_pred ccceeecccCCCCCcccccccChhcHH
Q 012549 105 PITKLSLSSGTTEGRQKYVPFTKHSSQ 131 (461)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~~~ 131 (461)
-+.+...||||| |+||-+..|++.+.
T Consensus 183 d~a~i~~TSGTT-G~PKgV~~th~~l~ 208 (563)
T 1amu_A 183 DLAYVIYTSGTT-GNPKGTMLEHKGIS 208 (563)
T ss_dssp SEEEEEEEC------CEEEEEESHHHH
T ss_pred CeEEEEECCCCC-CCCcEEEEehHHHH
Confidence 345888899999 99999999998654
No 33
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=97.28 E-value=0.00091 Score=71.15 Aligned_cols=38 Identities=26% Similarity=0.321 Sum_probs=27.3
Q ss_pred CCCCceEEEEEcCC---hHHHHHHHHhHhCCCCcccCccccCcee
Q 012549 310 WPNAKYVYSIMTGS---MQHYLKKLRHYAGDLPLVSADYGSTESW 351 (461)
Q Consensus 310 WP~L~~v~~~~~G~---~~~y~~~l~~~~~~vpi~~~~Y~aSEg~ 351 (461)
.+.|+ .+.+|+ ...-..++++.++++++. .+||.||+.
T Consensus 325 ~~~lr---~~~~gG~~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~ 365 (570)
T 4gr5_A 325 FEGVR---YAITGGEPASVPHVAKARRDHPALRLG-NGYGPAESM 365 (570)
T ss_dssp GTTCS---EEEEESSCCCHHHHHHHHHHCTTCEEE-EEECCGGGC
T ss_pred CCCce---EEEEecccCCHHHHHHHHHhCCCcEEE-Eeechhhhe
Confidence 45677 445454 345667777778888888 999999973
No 34
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=97.22 E-value=0.0014 Score=70.75 Aligned_cols=27 Identities=37% Similarity=0.521 Sum_probs=22.4
Q ss_pred CcccceeecccCCCCCcccccccChhcH
Q 012549 103 QEPITKLSLSSGTTEGRQKYVPFTKHSS 130 (461)
Q Consensus 103 ~~pi~~f~~TSGTT~G~~K~IP~T~~~~ 130 (461)
++-+.+...||||| |+||-+.+|++.+
T Consensus 163 ~~d~a~iiyTSGST-G~PKgV~~th~~l 189 (620)
T 4dg8_A 163 ADQIAYINFSSGTT-GRPKAIACTHAGI 189 (620)
T ss_dssp TTSEEEEEEEBSSS-SSCEEEEEEHHHH
T ss_pred CCCeEEEEECCCcc-ccCeEEEEchHHH
Confidence 34455889999999 9999999998755
No 35
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=97.18 E-value=0.0017 Score=70.49 Aligned_cols=26 Identities=31% Similarity=0.254 Sum_probs=21.7
Q ss_pred cccceeecccCCCCCcccccccChhcH
Q 012549 104 EPITKLSLSSGTTEGRQKYVPFTKHSS 130 (461)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~~ 130 (461)
+-+.+...||||| |+||-+..|+..+
T Consensus 256 ~d~a~ilyTSGTT-G~PKgV~~sh~~~ 281 (652)
T 1pg4_A 256 EDPLFILYTSGST-GKPKGVLHTTGGY 281 (652)
T ss_dssp TSEEEEEEECCSS-SSCEEEEEESHHH
T ss_pred CCCEEEEeccCCC-CCCceEEECchHH
Confidence 3345888999999 9999999998854
No 36
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=97.13 E-value=0.0035 Score=66.17 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=21.6
Q ss_pred cccceeecccCCCCCcccccccChhcH
Q 012549 104 EPITKLSLSSGTTEGRQKYVPFTKHSS 130 (461)
Q Consensus 104 ~pi~~f~~TSGTT~G~~K~IP~T~~~~ 130 (461)
+-+.+...||||| |+||-+..|++.+
T Consensus 176 ~~~a~i~~TSGTT-G~PKgV~~sh~~l 201 (541)
T 1v25_A 176 RAACGMAYTTGTT-GLPKGVVYSHRAL 201 (541)
T ss_dssp TSEEEEEEECSSS-SSCEEEEEEHHHH
T ss_pred CCcEEEEECCCCC-CCCcEeeeehHHH
Confidence 3445778899999 9999999998765
No 37
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=97.09 E-value=0.00065 Score=68.29 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=20.5
Q ss_pred eeecccCCCCCcccccccChhcHHH
Q 012549 108 KLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 108 ~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
+...||||| |+||-+..|++.+..
T Consensus 41 ~Il~TSGTT-G~PKgV~~th~~l~~ 64 (358)
T 4gs5_A 41 FVLHTSGST-GMPKPITVTRAQLAA 64 (358)
T ss_dssp EEEEEECTT-SSEEEEEEEHHHHHH
T ss_pred EEEECCccc-ccCcEEEEeHHHHHH
Confidence 777899999 999999999886543
No 38
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=97.08 E-value=0.0022 Score=66.02 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=17.0
Q ss_pred ccceeecccCCCCCcccccccChhcHHH
Q 012549 105 PITKLSLSSGTTEGRQKYVPFTKHSSQT 132 (461)
Q Consensus 105 pi~~f~~TSGTT~G~~K~IP~T~~~~~~ 132 (461)
.+.+...||||| |+||-+..|++.+..
T Consensus 184 d~a~i~~TSGTT-G~PKgV~~th~~l~~ 210 (480)
T 3t5a_A 184 STAYLQYTSGST-RTPAGVVMSHQNVRV 210 (480)
T ss_dssp SEEEEECC-------CCCEEEEHHHHHH
T ss_pred ceEEEEecCCCC-CCCcEEEEeHHHHHH
Confidence 345889999999 999999999987644
No 39
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=96.39 E-value=0.009 Score=69.94 Aligned_cols=27 Identities=26% Similarity=0.191 Sum_probs=22.4
Q ss_pred CcccceeecccCCCCCcccccccChhcH
Q 012549 103 QEPITKLSLSSGTTEGRQKYVPFTKHSS 130 (461)
Q Consensus 103 ~~pi~~f~~TSGTT~G~~K~IP~T~~~~ 130 (461)
++-+.+...||||| |+||-+.+|++.+
T Consensus 606 ~~~~ayiiyTSGST-G~PKgV~~~h~~l 632 (1304)
T 2vsq_A 606 PNDPAYIMYTSGTT-GKPKGNITTHANI 632 (1304)
T ss_dssp TTSEEEEEEECCSS-SSCEEEEEEHHHH
T ss_pred CCCeEEEEeCCCCC-CCCCEEEEehHHH
Confidence 34455889999999 9999999998765
No 40
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=28.70 E-value=29 Score=29.25 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=21.8
Q ss_pred CcCCCeEEEEEeccCc--eeccccCCE
Q 012549 406 VKLGQEYEIVLTSFTG--KSFISISIK 430 (461)
Q Consensus 406 le~G~~YelVvTt~~G--LyRYriGDv 430 (461)
.-.|+.|+++|.+..| +|||.-|+.
T Consensus 38 f~Sgq~~Df~v~d~~G~~VwrwS~~~~ 64 (120)
T 3isy_A 38 FSTGQKFELVVYDSEHKERYRYSKEKM 64 (120)
T ss_dssp ESSSCCEEEEEECTTCCEEEETTTTCC
T ss_pred eCCCCEEEEEEECCCCCEEEEccccch
Confidence 4689999999999888 999988774
No 41
>3oei_C RELK (toxin RV3358); toxin-antitoxin systems, protein-protein complex, tuberculos structural genomics consortium, protein binding; HET: MLZ FLC; 2.15A {Mycobacterium tuberculosis} SCOP: d.298.1.0
Probab=22.43 E-value=23 Score=28.66 Aligned_cols=17 Identities=18% Similarity=0.008 Sum_probs=13.2
Q ss_pred EEEEeccCceeccccCC
Q 012549 413 EIVLTSFTGKSFISISI 429 (461)
Q Consensus 413 elVvTt~~GLyRYriGD 429 (461)
|-+--+.+|+||+|+||
T Consensus 58 e~Lkg~l~g~~s~RI~~ 74 (96)
T 3oei_C 58 EPLQGELSGYWSRRIDD 74 (96)
T ss_dssp EECCGGGTTCEEEESSS
T ss_pred hhcCCCCCCcEEEECCC
Confidence 33444679999999999
No 42
>2ln7_A LPXTG-SITE transpeptidase family protein; sortase, sortase family D, enzyme, protein binding; NMR {Bacillus anthracis}
Probab=22.27 E-value=28 Score=30.08 Aligned_cols=31 Identities=19% Similarity=0.021 Sum_probs=25.5
Q ss_pred ccCCCcCCCeEEEEEeccCceeccccCCEEEec
Q 012549 402 PLSQVKLGQEYEIVLTSFTGKSFISISIKIPIS 434 (461)
Q Consensus 402 ~l~Ele~G~~YelVvTt~~GLyRYriGDvV~v~ 434 (461)
.|++|++|.. |+|++..+-|+|++-++..|.
T Consensus 72 ~L~~l~~GD~--i~v~~~~~~~~Y~V~~~~vv~ 102 (147)
T 2ln7_A 72 DLGQLKEKDT--LVLEYDNKTYTYEIQKIWITH 102 (147)
T ss_dssp HHHHSSTTCE--EEEEETTEEEEEEEEEEEEEE
T ss_pred hhhcccCCCE--EEEEECCcEEEEEEEeEEEEC
Confidence 4678999984 678999999999998876665
No 43
>3g66_A Sortase C; pilus, transferase; HET: MES; 1.70A {Streptococcus pneumoniae} PDB: 3g69_A*
Probab=20.23 E-value=47 Score=30.67 Aligned_cols=31 Identities=13% Similarity=0.178 Sum_probs=26.7
Q ss_pred ccCCCcCCCeEEEEEeccCceeccccCCEEEec
Q 012549 402 PLSQVKLGQEYEIVLTSFTGKSFISISIKIPIS 434 (461)
Q Consensus 402 ~l~Ele~G~~YelVvTt~~GLyRYriGDvV~v~ 434 (461)
.|++|+.|. .|+|++..|-|+|++-++-.|.
T Consensus 125 ~L~~lk~GD--~I~v~~~~~~~~Y~V~~~~vV~ 155 (212)
T 3g66_A 125 QLDKMKKGD--IFYLHVLDQVLAYQVDQIVTVE 155 (212)
T ss_dssp TGGGCCTTC--EEEEEETTEEEEEEEEEEEEEC
T ss_pred cHhhCCcCC--EEEEEECCeEEEEEEeeEEEEC
Confidence 578899998 6899999999999998776665
Done!