Query 012551
Match_columns 461
No_of_seqs 232 out of 1161
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 03:49:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012551.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012551hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1605 TFIIF-interacting CTD 100.0 4.8E-48 1E-52 380.5 14.2 180 280-459 81-262 (262)
2 TIGR02251 HIF-SF_euk Dullard-l 100.0 2.1E-40 4.6E-45 304.6 18.1 161 288-448 1-162 (162)
3 PF03031 NIF: NLI interacting 100.0 1.5E-38 3.3E-43 287.3 16.5 158 289-450 1-159 (159)
4 TIGR02245 HAD_IIID1 HAD-superf 100.0 2.4E-36 5.1E-41 287.0 15.5 158 285-458 18-193 (195)
5 KOG2832 TFIIF-interacting CTD 100.0 5.9E-32 1.3E-36 273.4 11.4 161 282-459 183-345 (393)
6 TIGR02250 FCP1_euk FCP1-like p 100.0 3.3E-31 7.2E-36 243.2 13.4 138 285-425 3-154 (156)
7 COG5190 FCP1 TFIIF-interacting 99.9 2E-28 4.3E-33 252.5 8.9 177 280-457 204-382 (390)
8 smart00577 CPDc catalytic doma 99.9 2.6E-26 5.6E-31 207.4 15.3 145 287-431 1-148 (148)
9 KOG0323 TFIIF-interacting CTD 99.8 3.9E-20 8.5E-25 200.4 9.4 137 286-425 144-297 (635)
10 TIGR01685 MDP-1 magnesium-depe 98.4 5.3E-07 1.2E-11 84.9 7.6 137 289-425 3-157 (174)
11 COG5190 FCP1 TFIIF-interacting 98.4 1.6E-07 3.5E-12 98.1 3.4 136 285-423 23-172 (390)
12 COG4996 Predicted phosphatase 98.4 1.3E-06 2.7E-11 79.4 7.8 137 290-432 2-153 (164)
13 TIGR01681 HAD-SF-IIIC HAD-supe 98.3 3E-07 6.5E-12 81.5 2.9 111 289-411 1-121 (128)
14 PRK13288 pyrophosphatase PpaX; 98.1 9.7E-07 2.1E-11 83.2 2.3 95 327-422 81-179 (214)
15 cd01427 HAD_like Haloacid deha 98.1 1.9E-06 4.1E-11 72.4 3.4 107 290-412 1-127 (139)
16 PRK14988 GMP/IMP nucleotidase; 98.0 2.2E-06 4.9E-11 82.5 2.8 93 327-420 92-188 (224)
17 TIGR01662 HAD-SF-IIIA HAD-supe 98.0 3.9E-06 8.4E-11 73.4 4.0 114 289-420 1-126 (132)
18 TIGR01684 viral_ppase viral ph 98.0 2.2E-05 4.8E-10 79.8 8.1 73 285-379 123-197 (301)
19 PHA03398 viral phosphatase sup 97.9 4.3E-05 9.3E-10 77.8 9.3 123 285-430 125-283 (303)
20 PRK13225 phosphoglycolate phos 97.9 3.8E-06 8.2E-11 83.9 0.8 94 327-421 141-235 (273)
21 TIGR01656 Histidinol-ppas hist 97.8 1.4E-05 3E-10 72.0 3.3 116 289-420 1-140 (147)
22 TIGR00338 serB phosphoserine p 97.8 5.1E-06 1.1E-10 78.4 0.3 97 327-425 84-194 (219)
23 TIGR00213 GmhB_yaeD D,D-heptos 97.8 3.3E-05 7.2E-10 71.5 5.6 115 289-421 2-146 (176)
24 TIGR01261 hisB_Nterm histidino 97.8 4.1E-05 8.8E-10 70.9 6.0 122 289-425 2-147 (161)
25 PF12689 Acid_PPase: Acid Phos 97.8 5.4E-05 1.2E-09 71.3 6.6 117 288-411 3-137 (169)
26 COG0637 Predicted phosphatase/ 97.7 6.5E-06 1.4E-10 79.5 0.2 99 327-426 85-187 (221)
27 TIGR01686 FkbH FkbH-like domai 97.7 5.4E-05 1.2E-09 76.9 5.7 108 288-411 3-116 (320)
28 PRK08942 D,D-heptose 1,7-bisph 97.6 0.0001 2.2E-09 68.4 6.0 116 288-420 3-142 (181)
29 PHA02530 pseT polynucleotide k 97.6 3.4E-05 7.4E-10 76.6 3.1 128 286-424 156-295 (300)
30 TIGR01672 AphA HAD superfamily 97.4 0.00012 2.6E-09 72.2 4.1 132 285-421 60-207 (237)
31 PF13419 HAD_2: Haloacid dehal 97.4 0.0001 2.2E-09 65.0 3.1 95 325-420 74-172 (176)
32 TIGR01664 DNA-3'-Pase DNA 3'-p 97.3 0.00041 8.8E-09 64.5 6.2 107 288-408 13-137 (166)
33 TIGR01668 YqeG_hyp_ppase HAD s 97.2 0.00043 9.3E-09 64.2 4.9 107 286-421 23-132 (170)
34 TIGR02253 CTE7 HAD superfamily 97.2 0.00026 5.5E-09 66.7 3.4 95 326-421 92-191 (221)
35 PRK06769 hypothetical protein; 97.2 0.0004 8.6E-09 64.6 4.4 116 289-422 5-134 (173)
36 PF05152 DUF705: Protein of un 97.2 0.0012 2.6E-08 66.8 8.1 71 286-378 120-192 (297)
37 PRK05446 imidazole glycerol-ph 97.2 0.00085 1.8E-08 70.0 7.0 121 287-422 1-145 (354)
38 TIGR01509 HAD-SF-IA-v3 haloaci 97.2 0.00038 8.3E-09 62.9 3.9 92 327-420 84-179 (183)
39 TIGR01489 DKMTPPase-SF 2,3-dik 97.1 0.00043 9.2E-09 63.0 3.9 86 327-413 71-177 (188)
40 PLN03243 haloacid dehalogenase 97.1 0.00042 9.2E-09 68.8 4.2 97 327-424 108-208 (260)
41 PRK13582 thrH phosphoserine ph 97.1 0.0001 2.2E-09 68.8 -0.3 94 327-421 67-167 (205)
42 PLN02770 haloacid dehalogenase 97.1 0.00055 1.2E-08 66.8 4.7 97 327-424 107-207 (248)
43 TIGR02254 YjjG/YfnB HAD superf 97.1 0.00038 8.2E-09 65.3 3.3 94 327-421 96-194 (224)
44 TIGR01454 AHBA_synth_RP 3-amin 97.1 0.00053 1.2E-08 64.3 4.2 95 327-422 74-172 (205)
45 PRK11009 aphA acid phosphatase 97.1 0.0014 3E-08 64.8 7.1 130 285-420 60-206 (237)
46 TIGR01428 HAD_type_II 2-haloal 97.0 0.00048 1E-08 64.1 3.4 93 327-420 91-187 (198)
47 COG0546 Gph Predicted phosphat 97.0 0.0004 8.6E-09 66.6 2.8 93 327-420 88-184 (220)
48 TIGR01449 PGP_bact 2-phosphogl 97.0 0.00055 1.2E-08 63.9 3.7 96 327-423 84-183 (213)
49 KOG3109 Haloacid dehalogenase- 97.0 0.00037 8.1E-09 68.3 2.2 87 327-415 99-195 (244)
50 TIGR01993 Pyr-5-nucltdase pyri 97.0 0.00039 8.5E-09 64.1 2.1 91 327-420 83-180 (184)
51 TIGR02137 HSK-PSP phosphoserin 96.8 0.00068 1.5E-08 65.0 2.6 49 327-376 67-115 (203)
52 PRK09449 dUMP phosphatase; Pro 96.8 0.00094 2E-08 63.2 3.4 92 327-419 94-190 (224)
53 PRK09456 ?-D-glucose-1-phospha 96.8 0.00089 1.9E-08 62.8 3.1 100 327-426 83-186 (199)
54 TIGR01689 EcbF-BcbF capsule bi 96.8 0.0035 7.6E-08 56.4 6.6 84 289-390 2-99 (126)
55 PRK10826 2-deoxyglucose-6-phos 96.8 0.0013 2.7E-08 62.6 3.9 99 327-426 91-193 (222)
56 TIGR01670 YrbI-phosphatas 3-de 96.7 0.0018 3.8E-08 59.1 4.4 111 289-420 2-114 (154)
57 PRK10725 fructose-1-P/6-phosph 96.7 0.00093 2E-08 61.3 2.4 94 327-422 87-183 (188)
58 TIGR02009 PGMB-YQAB-SF beta-ph 96.7 0.00096 2.1E-08 60.8 2.2 92 327-421 87-182 (185)
59 PLN02954 phosphoserine phospha 96.7 0.00065 1.4E-08 64.3 1.1 92 327-420 83-191 (224)
60 PLN02575 haloacid dehalogenase 96.7 0.0017 3.6E-08 68.4 4.2 97 327-424 215-315 (381)
61 PRK11587 putative phosphatase; 96.6 0.0035 7.6E-08 59.6 5.3 96 327-424 82-181 (218)
62 TIGR01422 phosphonatase phosph 96.5 0.0023 5E-08 62.1 4.1 98 327-424 98-200 (253)
63 PRK13222 phosphoglycolate phos 96.4 0.0031 6.6E-08 59.3 4.0 93 327-420 92-188 (226)
64 TIGR01663 PNK-3'Pase polynucle 96.4 0.0066 1.4E-07 66.5 7.0 109 286-408 166-294 (526)
65 PRK13226 phosphoglycolate phos 96.4 0.0032 6.9E-08 60.6 4.1 95 326-421 93-191 (229)
66 COG1011 Predicted hydrolase (H 96.2 0.0061 1.3E-07 57.3 4.6 84 327-411 98-184 (229)
67 TIGR01491 HAD-SF-IB-PSPlk HAD- 96.2 0.0079 1.7E-07 55.4 5.2 94 327-421 79-186 (201)
68 PRK11133 serB phosphoserine ph 96.1 0.0016 3.5E-08 66.9 0.3 94 327-421 180-287 (322)
69 PRK13223 phosphoglycolate phos 96.1 0.0052 1.1E-07 61.1 3.9 93 327-420 100-196 (272)
70 TIGR03351 PhnX-like phosphonat 96.1 0.0055 1.2E-07 57.8 3.6 95 327-421 86-186 (220)
71 PRK10563 6-phosphogluconate ph 96.1 0.0029 6.3E-08 59.9 1.7 95 327-424 87-185 (221)
72 PRK13478 phosphonoacetaldehyde 96.1 0.0079 1.7E-07 59.1 4.8 97 327-423 100-201 (267)
73 PLN02779 haloacid dehalogenase 96.0 0.0067 1.5E-07 60.9 4.3 97 327-424 143-245 (286)
74 TIGR02247 HAD-1A3-hyp Epoxide 96.0 0.0028 6.1E-08 59.5 1.4 99 326-425 92-196 (211)
75 TIGR01533 lipo_e_P4 5'-nucleot 96.0 0.0067 1.4E-07 61.0 4.0 93 286-379 73-173 (266)
76 TIGR02252 DREG-2 REG-2-like, H 96.0 0.0056 1.2E-07 57.0 3.2 90 328-419 105-199 (203)
77 TIGR01990 bPGM beta-phosphoglu 95.9 0.0053 1.1E-07 55.9 2.7 92 327-421 86-181 (185)
78 TIGR01459 HAD-SF-IIA-hyp4 HAD- 95.9 0.013 2.8E-07 57.0 5.5 67 288-378 8-77 (242)
79 PLN02940 riboflavin kinase 95.8 0.0055 1.2E-07 64.2 2.8 94 327-421 92-190 (382)
80 PRK09484 3-deoxy-D-manno-octul 95.8 0.012 2.5E-07 55.3 4.5 114 287-421 20-135 (183)
81 PRK08238 hypothetical protein; 95.7 0.01 2.2E-07 64.2 4.5 48 327-378 71-119 (479)
82 TIGR01548 HAD-SF-IA-hyp1 haloa 95.7 0.018 3.9E-07 53.8 5.3 80 329-410 107-190 (197)
83 TIGR01691 enolase-ppase 2,3-di 95.7 0.0088 1.9E-07 58.3 3.3 95 326-421 93-192 (220)
84 PHA02597 30.2 hypothetical pro 95.6 0.0047 1E-07 57.5 1.2 96 327-424 73-173 (197)
85 TIGR01549 HAD-SF-IA-v1 haloaci 95.6 0.015 3.3E-07 51.7 4.4 81 327-411 63-147 (154)
86 PLN02811 hydrolase 95.3 0.01 2.2E-07 56.6 2.5 97 327-424 77-183 (220)
87 COG0560 SerB Phosphoserine pho 95.3 0.028 6.1E-07 54.5 5.3 85 327-412 76-174 (212)
88 PLN02919 haloacid dehalogenase 95.1 0.029 6.2E-07 66.2 5.5 96 329-424 162-261 (1057)
89 COG0561 Cof Predicted hydrolas 95.0 0.079 1.7E-06 51.7 7.5 60 288-370 3-63 (264)
90 PRK09552 mtnX 2-hydroxy-3-keto 94.9 0.054 1.2E-06 51.7 6.1 96 327-422 73-184 (219)
91 PRK00192 mannosyl-3-phosphogly 94.7 0.077 1.7E-06 52.4 6.8 58 288-368 4-62 (273)
92 COG0241 HisB Histidinol phosph 94.7 0.047 1E-06 52.2 4.9 126 288-427 5-154 (181)
93 PTZ00445 p36-lilke protein; Pr 94.5 0.021 4.6E-07 56.0 2.2 132 285-425 40-205 (219)
94 PF08282 Hydrolase_3: haloacid 94.4 0.091 2E-06 49.0 6.3 54 291-367 1-55 (254)
95 TIGR01493 HAD-SF-IA-v2 Haloaci 94.4 0.01 2.2E-07 54.0 -0.4 76 327-409 89-167 (175)
96 PRK06698 bifunctional 5'-methy 94.2 0.041 8.8E-07 58.7 3.7 92 327-421 329-423 (459)
97 PRK03669 mannosyl-3-phosphogly 94.2 0.15 3.3E-06 50.2 7.5 59 286-367 5-64 (271)
98 PF13344 Hydrolase_6: Haloacid 94.1 0.12 2.5E-06 44.4 5.7 51 291-365 1-52 (101)
99 TIGR02726 phenyl_P_delta pheny 93.9 0.087 1.9E-06 49.5 4.9 105 288-413 7-113 (169)
100 TIGR01487 SPP-like sucrose-pho 93.8 0.17 3.7E-06 47.9 6.8 57 289-368 2-59 (215)
101 PF08645 PNK3P: Polynucleotide 93.8 0.096 2.1E-06 48.5 4.8 106 289-409 1-129 (159)
102 PRK10513 sugar phosphate phosp 93.7 0.19 4E-06 49.1 6.9 57 288-367 3-60 (270)
103 TIGR03333 salvage_mtnX 2-hydro 93.6 0.12 2.7E-06 49.2 5.5 94 326-419 68-177 (214)
104 TIGR01544 HAD-SF-IE haloacid d 93.6 0.13 2.9E-06 52.2 5.9 105 326-431 119-248 (277)
105 PRK10530 pyridoxal phosphate ( 93.5 0.22 4.8E-06 48.3 7.1 58 288-368 3-61 (272)
106 TIGR02461 osmo_MPG_phos mannos 93.5 0.2 4.3E-06 48.6 6.7 54 290-367 1-55 (225)
107 PRK01158 phosphoglycolate phos 93.3 0.31 6.7E-06 46.2 7.6 57 289-368 4-61 (230)
108 TIGR00099 Cof-subfamily Cof su 93.2 0.22 4.7E-06 48.4 6.5 56 290-368 1-57 (256)
109 TIGR02463 MPGP_rel mannosyl-3- 93.0 0.27 6E-06 46.5 6.7 54 291-367 2-56 (221)
110 PRK15126 thiamin pyrimidine py 92.9 0.29 6.3E-06 48.0 6.9 57 289-368 3-60 (272)
111 PRK10976 putative hydrolase; P 92.8 0.3 6.5E-06 47.6 6.9 57 289-368 3-60 (266)
112 TIGR01486 HAD-SF-IIB-MPGP mann 91.8 0.45 9.7E-06 46.4 6.7 55 290-367 1-56 (256)
113 TIGR01484 HAD-SF-IIB HAD-super 91.8 0.33 7.2E-06 45.3 5.6 54 290-365 1-55 (204)
114 PF09419 PGP_phosphatase: Mito 91.6 0.38 8.2E-06 45.5 5.7 96 283-408 36-146 (168)
115 smart00775 LNS2 LNS2 domain. T 91.4 0.47 1E-05 43.8 6.0 61 291-364 2-67 (157)
116 TIGR01482 SPP-subfamily Sucros 91.2 0.56 1.2E-05 44.2 6.5 53 291-366 1-54 (225)
117 PRK10748 flavin mononucleotide 91.0 0.13 2.8E-06 49.9 2.0 89 327-421 112-204 (238)
118 COG2179 Predicted hydrolase of 90.9 0.24 5.1E-06 47.1 3.6 117 280-425 20-141 (175)
119 TIGR01488 HAD-SF-IB Haloacid D 90.8 0.64 1.4E-05 41.9 6.3 49 327-376 72-121 (177)
120 PF06888 Put_Phosphatase: Puta 90.8 0.34 7.3E-06 48.1 4.7 48 327-375 70-120 (234)
121 PRK10444 UMP phosphatase; Prov 90.7 0.4 8.6E-06 47.5 5.2 55 289-367 2-57 (248)
122 COG3882 FkbH Predicted enzyme 90.7 0.29 6.2E-06 53.3 4.4 128 285-426 219-356 (574)
123 PRK10187 trehalose-6-phosphate 90.5 0.56 1.2E-05 46.7 6.1 60 287-364 13-74 (266)
124 TIGR01456 CECR5 HAD-superfamil 90.4 0.46 1E-05 48.5 5.5 53 289-365 1-62 (321)
125 PTZ00174 phosphomannomutase; P 90.2 0.73 1.6E-05 45.1 6.5 52 288-362 5-57 (247)
126 PLN02645 phosphoglycolate phos 90.2 0.39 8.5E-06 48.8 4.8 53 288-364 28-81 (311)
127 PRK12702 mannosyl-3-phosphogly 89.4 0.96 2.1E-05 46.6 6.8 57 289-368 2-59 (302)
128 TIGR01458 HAD-SF-IIA-hyp3 HAD- 89.4 0.53 1.2E-05 46.5 4.9 48 289-356 2-50 (257)
129 TIGR01452 PGP_euk phosphoglyco 89.2 0.66 1.4E-05 46.2 5.4 42 289-354 3-45 (279)
130 PF11019 DUF2608: Protein of u 88.9 0.27 6E-06 49.0 2.5 100 326-425 79-209 (252)
131 PLN02423 phosphomannomutase 88.5 1 2.3E-05 44.2 6.2 55 286-366 5-59 (245)
132 COG4502 5'(3')-deoxyribonucleo 87.7 0.92 2E-05 42.4 4.8 81 327-427 67-156 (180)
133 TIGR01485 SPP_plant-cyano sucr 87.4 1.1 2.3E-05 43.7 5.5 60 288-367 1-61 (249)
134 TIGR01490 HAD-SF-IB-hyp1 HAD-s 87.3 0.71 1.5E-05 42.8 4.1 49 327-376 86-135 (202)
135 PRK14502 bifunctional mannosyl 86.8 2.2 4.7E-05 48.6 8.1 60 285-367 413-473 (694)
136 PLN02887 hydrolase family prot 86.2 1.7 3.8E-05 48.4 6.9 58 287-367 307-365 (580)
137 TIGR01457 HAD-SF-IIA-hyp2 HAD- 85.4 1.6 3.4E-05 43.0 5.5 40 290-353 3-43 (249)
138 COG2503 Predicted secreted aci 84.6 1 2.2E-05 45.3 3.8 75 285-365 76-161 (274)
139 PLN03017 trehalose-phosphatase 84.1 1.7 3.7E-05 46.0 5.3 60 285-362 108-167 (366)
140 PLN02151 trehalose-phosphatase 83.4 2.1 4.6E-05 45.0 5.7 60 285-362 95-154 (354)
141 COG4359 Uncharacterized conser 83.2 2.9 6.2E-05 40.8 6.0 42 327-368 72-114 (220)
142 TIGR01460 HAD-SF-IIA Haloacid 83.0 1.7 3.7E-05 42.3 4.5 50 291-364 1-55 (236)
143 PLN02580 trehalose-phosphatase 82.8 2.3 5E-05 45.3 5.7 61 285-363 116-176 (384)
144 TIGR01675 plant-AP plant acid 82.0 4 8.7E-05 40.5 6.8 93 285-378 74-172 (229)
145 KOG3120 Predicted haloacid deh 81.7 0.71 1.5E-05 45.9 1.3 40 327-366 83-124 (256)
146 TIGR00685 T6PP trehalose-phosp 81.1 1.6 3.4E-05 42.7 3.5 48 287-352 2-51 (244)
147 COG0647 NagD Predicted sugar p 80.6 2.7 5.8E-05 42.7 5.1 53 288-364 8-61 (269)
148 PF06941 NT5C: 5' nucleotidase 80.4 1.6 3.4E-05 41.0 3.2 79 327-421 72-158 (191)
149 COG1877 OtsB Trehalose-6-phosp 79.5 3.6 7.7E-05 41.7 5.6 61 284-362 14-76 (266)
150 TIGR01511 ATPase-IB1_Cu copper 78.5 3.7 8E-05 45.4 5.8 86 326-421 403-489 (562)
151 PF00702 Hydrolase: haloacid d 78.1 2.1 4.5E-05 39.4 3.2 81 325-409 124-206 (215)
152 TIGR02244 HAD-IG-Ncltidse HAD 76.1 3.7 8E-05 43.1 4.7 53 324-376 180-240 (343)
153 PRK10725 fructose-1-P/6-phosph 76.0 1.6 3.4E-05 39.9 1.8 16 288-303 5-20 (188)
154 PRK11587 putative phosphatase; 74.8 1.6 3.5E-05 41.4 1.5 15 289-303 4-18 (218)
155 PF03767 Acid_phosphat_B: HAD 74.1 3.3 7.1E-05 40.7 3.5 74 286-365 70-153 (229)
156 PRK11590 hypothetical protein; 71.3 2.3 5E-05 40.5 1.7 39 327-365 94-134 (211)
157 PHA02597 30.2 hypothetical pro 71.3 2.1 4.5E-05 39.8 1.3 15 289-303 3-17 (197)
158 KOG2914 Predicted haloacid-hal 71.2 2.3 4.9E-05 42.0 1.6 93 326-418 90-189 (222)
159 TIGR01548 HAD-SF-IA-hyp1 haloa 71.1 1.9 4E-05 40.3 1.0 14 290-303 2-15 (197)
160 TIGR01993 Pyr-5-nucltdase pyri 70.0 2.4 5.3E-05 38.9 1.5 14 290-303 2-15 (184)
161 TIGR02253 CTE7 HAD superfamily 68.7 2.8 6.1E-05 39.3 1.6 15 289-303 3-17 (221)
162 PRK14501 putative bifunctional 68.7 8.9 0.00019 43.7 5.9 62 285-364 489-552 (726)
163 PF05116 S6PP: Sucrose-6F-phos 68.4 7.8 0.00017 38.2 4.8 54 287-364 1-56 (247)
164 TIGR03351 PhnX-like phosphonat 67.7 2.8 6.1E-05 39.4 1.4 15 289-303 2-16 (220)
165 PRK11590 hypothetical protein; 67.6 8 0.00017 36.8 4.5 17 287-303 5-21 (211)
166 TIGR02009 PGMB-YQAB-SF beta-ph 67.5 2.8 6E-05 38.0 1.3 15 289-303 2-16 (185)
167 PRK13226 phosphoglycolate phos 67.2 2.8 6E-05 40.3 1.3 16 288-303 12-27 (229)
168 COG3769 Predicted hydrolase (H 67.1 16 0.00035 36.7 6.5 59 288-370 7-66 (274)
169 PLN03243 haloacid dehalogenase 65.6 3.7 8.1E-05 40.8 1.9 20 284-303 20-39 (260)
170 TIGR01422 phosphonatase phosph 65.6 3.5 7.7E-05 39.9 1.7 15 289-303 3-17 (253)
171 PRK13223 phosphoglycolate phos 65.4 3.6 7.9E-05 40.9 1.8 16 288-303 13-28 (272)
172 TIGR02471 sucr_syn_bact_C sucr 65.2 8.9 0.00019 36.8 4.4 53 290-366 1-53 (236)
173 TIGR02252 DREG-2 REG-2-like, H 65.2 3.1 6.8E-05 38.6 1.2 14 290-303 2-15 (203)
174 PLN02770 haloacid dehalogenase 64.9 3.6 7.8E-05 40.2 1.6 16 288-303 22-37 (248)
175 PRK13478 phosphonoacetaldehyde 64.5 3.6 7.8E-05 40.4 1.5 16 288-303 4-19 (267)
176 PRK10748 flavin mononucleotide 64.1 3.9 8.5E-05 39.6 1.7 15 289-303 11-25 (238)
177 TIGR01549 HAD-SF-IA-v1 haloaci 63.3 3.1 6.7E-05 36.8 0.7 14 290-303 1-14 (154)
178 TIGR01545 YfhB_g-proteo haloac 62.9 17 0.00037 35.0 5.8 38 327-364 93-132 (210)
179 TIGR01525 ATPase-IB_hvy heavy 62.9 12 0.00025 41.3 5.3 79 326-413 382-462 (556)
180 TIGR01454 AHBA_synth_RP 3-amin 61.9 3.1 6.8E-05 38.8 0.5 13 291-303 1-13 (205)
181 TIGR01990 bPGM beta-phosphoglu 61.8 3.8 8.2E-05 37.1 1.1 14 290-303 1-14 (185)
182 TIGR01491 HAD-SF-IB-PSPlk HAD- 60.6 5.1 0.00011 36.7 1.7 16 288-303 4-19 (201)
183 PLN02779 haloacid dehalogenase 60.4 4.8 0.0001 40.5 1.6 18 286-303 38-55 (286)
184 PRK10826 2-deoxyglucose-6-phos 60.1 5.3 0.00011 37.9 1.8 17 287-303 6-22 (222)
185 TIGR01449 PGP_bact 2-phosphogl 59.7 3.6 7.9E-05 38.2 0.6 13 291-303 1-13 (213)
186 PRK09449 dUMP phosphatase; Pro 59.3 4.6 0.0001 38.1 1.2 14 289-302 4-17 (224)
187 TIGR02254 YjjG/YfnB HAD superf 59.2 4.8 0.0001 37.6 1.3 15 289-303 2-16 (224)
188 TIGR01680 Veg_Stor_Prot vegeta 59.1 19 0.00042 36.8 5.7 81 287-368 100-186 (275)
189 TIGR01428 HAD_type_II 2-haloal 58.7 4.9 0.00011 37.2 1.3 15 289-303 2-16 (198)
190 TIGR01493 HAD-SF-IA-v2 Haloaci 58.4 4.8 0.0001 36.4 1.1 13 291-303 2-14 (175)
191 TIGR02247 HAD-1A3-hyp Epoxide 58.3 5.6 0.00012 37.2 1.6 15 289-303 3-17 (211)
192 PRK13222 phosphoglycolate phos 58.1 5.1 0.00011 37.5 1.3 15 289-303 7-21 (226)
193 PF13419 HAD_2: Haloacid dehal 57.0 5.2 0.00011 34.9 1.0 13 291-303 1-13 (176)
194 PRK10563 6-phosphogluconate ph 56.3 6.2 0.00013 37.2 1.5 16 288-303 4-19 (221)
195 TIGR01512 ATPase-IB2_Cd heavy 55.6 8.6 0.00019 42.2 2.7 80 325-413 359-440 (536)
196 KOG3085 Predicted hydrolase (H 54.9 7 0.00015 39.1 1.7 83 325-410 111-197 (237)
197 TIGR01509 HAD-SF-IA-v3 haloaci 53.4 6 0.00013 35.5 0.9 13 291-303 2-14 (183)
198 PF12710 HAD: haloacid dehalog 51.5 12 0.00026 33.9 2.5 47 329-375 86-138 (192)
199 PF02358 Trehalose_PPase: Treh 50.5 23 0.00049 34.2 4.4 49 292-358 1-51 (235)
200 PLN03063 alpha,alpha-trehalose 49.8 27 0.0006 40.5 5.6 64 285-363 504-569 (797)
201 PF08235 LNS2: LNS2 (Lipin/Ned 48.8 41 0.00089 31.7 5.6 62 291-364 2-64 (157)
202 PLN02205 alpha,alpha-trehalose 48.2 31 0.00067 40.5 5.7 60 285-364 593-654 (854)
203 PRK06698 bifunctional 5'-methy 44.2 9 0.00019 41.0 0.6 16 288-303 241-256 (459)
204 PF05822 UMPH-1: Pyrimidine 5' 44.2 24 0.00053 35.5 3.6 100 326-425 88-211 (246)
205 PLN02382 probable sucrose-phos 43.8 58 0.0013 34.8 6.6 17 286-302 7-23 (413)
206 PLN02940 riboflavin kinase 43.2 15 0.00032 38.8 2.0 16 288-303 11-26 (382)
207 PLN02575 haloacid dehalogenase 43.1 11 0.00025 40.1 1.1 18 286-303 129-146 (381)
208 PRK09552 mtnX 2-hydroxy-3-keto 42.7 14 0.0003 35.2 1.6 16 288-303 3-18 (219)
209 TIGR01545 YfhB_g-proteo haloac 40.1 15 0.00034 35.3 1.5 16 288-303 5-20 (210)
210 COG1011 Predicted hydrolase (H 40.0 17 0.00038 33.9 1.8 16 288-303 4-19 (229)
211 TIGR02826 RNR_activ_nrdG3 anae 39.0 55 0.0012 30.1 4.8 71 316-406 65-137 (147)
212 PRK09456 ?-D-glucose-1-phospha 38.8 17 0.00036 34.0 1.5 14 290-303 2-15 (199)
213 PLN03064 alpha,alpha-trehalose 36.9 65 0.0014 38.4 6.1 71 285-364 588-660 (934)
214 PF08484 Methyltransf_14: C-me 33.5 1.1E+02 0.0025 28.5 6.1 66 329-425 53-120 (160)
215 KOG2134 Polynucleotide kinase 30.2 77 0.0017 34.3 4.7 58 286-353 73-130 (422)
216 TIGR01488 HAD-SF-IB Haloacid D 30.0 24 0.00053 31.6 1.0 13 291-303 2-14 (177)
217 PLN02177 glycerol-3-phosphate 28.8 45 0.00097 36.8 2.9 23 345-367 124-147 (497)
218 PF12710 HAD: haloacid dehalog 28.3 32 0.00069 31.1 1.4 13 291-303 1-13 (192)
219 TIGR01490 HAD-SF-IB-hyp1 HAD-s 26.7 32 0.00069 31.8 1.1 13 291-303 2-14 (202)
220 PF05761 5_nucleotid: 5' nucle 25.8 1.2E+02 0.0027 33.0 5.5 52 325-376 180-240 (448)
221 cd06537 CIDE_N_B CIDE_N domain 24.1 1.2E+02 0.0026 25.8 3.9 15 288-302 39-53 (81)
222 cd06539 CIDE_N_A CIDE_N domain 22.4 1.3E+02 0.0029 25.3 3.9 15 288-302 40-54 (78)
223 PLN02919 haloacid dehalogenase 22.2 50 0.0011 39.7 1.9 18 286-303 73-90 (1057)
224 PRK10671 copA copper exporting 21.8 71 0.0015 37.1 3.0 83 328-419 650-733 (834)
225 PF06941 NT5C: 5' nucleotidase 21.6 56 0.0012 30.5 1.8 16 288-303 2-17 (191)
226 cd06536 CIDE_N_ICAD CIDE_N dom 20.3 1.5E+02 0.0034 25.0 3.9 16 287-302 41-56 (80)
No 1
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=100.00 E-value=4.8e-48 Score=380.52 Aligned_cols=180 Identities=59% Similarity=0.969 Sum_probs=172.8
Q ss_pred CCccCCCCceEEEEeccccccccc--ccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcCCChHHH
Q 012551 280 PKETQGRKSVTLVLDLDETLVHST--LEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYA 357 (461)
Q Consensus 280 P~~~~~~kK~tLVLDLDeTLVhSs--~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk~YEIVIfTas~~~YA 357 (461)
|......+|++|||||||||||++ .++...++|.+++.+++..+.+||.+|||+++||+.++++||++||||+.+.||
T Consensus 81 ~~~~~~~~kk~lVLDLDeTLvHss~~~~~~~~~d~~~~v~~~~~~~~~yV~kRP~vdeFL~~~s~~~e~v~FTAs~~~Ya 160 (262)
T KOG1605|consen 81 PLRLATVGRKTLVLDLDETLVHSSLNLKPIVNADFTVPVEIDGHIHQVYVRKRPHVDEFLSRVSKWYELVLFTASLEVYA 160 (262)
T ss_pred CcccccCCCceEEEeCCCcccccccccCCCCCcceeeeeeeCCcceEEEEEcCCCHHHHHHHhHHHHHHHHHHhhhHHHH
Confidence 344557889999999999999999 777789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCeeeeEEEcccceeeCCceeeeccccCCCCCcEEEEECCchhhccCCCceeeeccccCCCCchHHHHHH
Q 012551 358 AQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIESWFDDPSDCSLISLL 437 (461)
Q Consensus 358 ~~ILd~LDP~~klf~~RLyRe~C~~~~g~yiKDLs~LgrDLskVVIIDDsp~~~~~qp~NgIpI~s~~gd~~D~eLl~Ll 437 (461)
.+|++.|||.+++|++|+||++|.+.+|+|+|||..+|+++++||||||+|.+|.+||+|||||++|++++.|+||++|+
T Consensus 161 ~~v~D~LD~~~~i~~~RlyR~~C~~~~g~yvKdls~~~~dL~~viIiDNsP~sy~~~p~NgIpI~sw~~d~~D~eLL~Ll 240 (262)
T KOG1605|consen 161 DPLLDILDPDRKIISHRLYRDSCTLKDGNYVKDLSVLGRDLSKVIIVDNSPQSYRLQPENGIPIKSWFDDPTDTELLKLL 240 (262)
T ss_pred HHHHHHccCCCCeeeeeecccceEeECCcEEEEcceeccCcccEEEEcCChHHhccCccCCCcccccccCCChHHHHHHH
Confidence 99999999988899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCCcHHHHHhhhCC
Q 012551 438 PFLDILADAEDVRPIIAKTFGN 459 (461)
Q Consensus 438 pfLe~L~~~~DVR~iL~krf~~ 459 (461)
|||+.|+.++|||++++++|+.
T Consensus 241 pfLe~L~~~~Dvr~~l~~~~~~ 262 (262)
T KOG1605|consen 241 PFLEALAFVDDVRPILARRFGN 262 (262)
T ss_pred HHHHHhcccccHHHHHHHhhcC
Confidence 9999999999999999999874
No 2
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=100.00 E-value=2.1e-40 Score=304.63 Aligned_cols=161 Identities=57% Similarity=0.931 Sum_probs=153.5
Q ss_pred ceEEEEecccccccccccccC-CCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcCCChHHHHHHHHHHCC
Q 012551 288 SVTLVLDLDETLVHSTLEYCD-DADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDP 366 (461)
Q Consensus 288 K~tLVLDLDeTLVhSs~~~~~-~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk~YEIVIfTas~~~YA~~ILd~LDP 366 (461)
|+||||||||||||+++.+.. .++|.+.+...+...++||++|||+.+||++|+++|||+|||++.+.||++|++.|||
T Consensus 1 k~~lvlDLDeTLi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~yei~I~Ts~~~~yA~~il~~ldp 80 (162)
T TIGR02251 1 KKTLVLDLDETLVHSTFKMPKVDADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKWYELVIFTASLEEYADPVLDILDR 80 (162)
T ss_pred CcEEEEcCCCCcCCCCCCCCCCCCceEEEEEecCcEEEEEEEECCCHHHHHHHHHhcCEEEEEcCCcHHHHHHHHHHHCc
Confidence 579999999999999988765 6788888888878889999999999999999999999999999999999999999999
Q ss_pred CCCeeeeEEEcccceeeCCceeeeccccCCCCCcEEEEECCchhhccCCCceeeeccccCCCCchHHHHHHHHHHHccCC
Q 012551 367 DGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIESWFDDPSDCSLISLLPFLDILADA 446 (461)
Q Consensus 367 ~~klf~~RLyRe~C~~~~g~yiKDLs~LgrDLskVVIIDDsp~~~~~qp~NgIpI~s~~gd~~D~eLl~LlpfLe~L~~~ 446 (461)
.+.+|.++++|++|...++.+.|||+.+|+++++||||||++..|..|++|||+|.+|.|+.+|++|++|++||+.|+..
T Consensus 81 ~~~~f~~~l~r~~~~~~~~~~~K~L~~l~~~~~~vIiVDD~~~~~~~~~~NgI~i~~f~~~~~D~~L~~l~~~L~~l~~~ 160 (162)
T TIGR02251 81 GGKVISRRLYRESCVFTNGKYVKDLSLVGKDLSKVIIIDNSPYSYSLQPDNAIPIKSWFGDPNDTELLNLIPFLEGLRFE 160 (162)
T ss_pred CCCEEeEEEEccccEEeCCCEEeEchhcCCChhhEEEEeCChhhhccCccCEeecCCCCCCCCHHHHHHHHHHHHHHhcc
Confidence 98899999999999999899999999999999999999999999999999999999999999999999999999999988
Q ss_pred CC
Q 012551 447 ED 448 (461)
Q Consensus 447 ~D 448 (461)
+|
T Consensus 161 ~~ 162 (162)
T TIGR02251 161 DD 162 (162)
T ss_pred CC
Confidence 76
No 3
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=100.00 E-value=1.5e-38 Score=287.34 Aligned_cols=158 Identities=51% Similarity=0.856 Sum_probs=130.4
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcCCChHHHHHHHHHHCCCC
Q 012551 289 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDG 368 (461)
Q Consensus 289 ~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk~YEIVIfTas~~~YA~~ILd~LDP~~ 368 (461)
|||||||||||||+...+....++... . ....++|++|||+++||++++++|||+|||++.+.||++|++.|||.+
T Consensus 1 k~LVlDLD~TLv~~~~~~~~~~~~~~~---~-~~~~~~v~~RP~l~~FL~~l~~~~ev~i~T~~~~~ya~~v~~~ldp~~ 76 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPLPYDFKII---D-QRGGYYVKLRPGLDEFLEELSKHYEVVIWTSASEEYAEPVLDALDPNG 76 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCTT-SEEEE---T-EEEEEEEEE-TTHHHHHHHHHHHCEEEEE-SS-HHHHHHHHHHHTTTT
T ss_pred CEEEEeCCCcEEEEeecCCCCccccee---c-cccceeEeeCchHHHHHHHHHHhceEEEEEeehhhhhhHHHHhhhhhc
Confidence 699999999999998765443333221 2 566889999999999999999999999999999999999999999988
Q ss_pred CeeeeEEEcccceeeCCceeeeccccCCCCCcEEEEECCchhhccCCCceeeeccccCC-CCchHHHHHHHHHHHccCCC
Q 012551 369 KLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIESWFDD-PSDCSLISLLPFLDILADAE 447 (461)
Q Consensus 369 klf~~RLyRe~C~~~~g~yiKDLs~LgrDLskVVIIDDsp~~~~~qp~NgIpI~s~~gd-~~D~eLl~LlpfLe~L~~~~ 447 (461)
.+|.++++|++|....+.++|||+++|+++++||||||++.+|..|++|+|+|++|.++ +.|++|++|++||+.|+..+
T Consensus 77 ~~~~~~~~r~~~~~~~~~~~KdL~~l~~~~~~vvivDD~~~~~~~~~~N~i~v~~f~~~~~~D~~L~~l~~~L~~l~~~~ 156 (159)
T PF03031_consen 77 KLFSRRLYRDDCTFDKGSYIKDLSKLGRDLDNVVIVDDSPRKWALQPDNGIPVPPFFGDTPNDRELLRLLPFLEELAKED 156 (159)
T ss_dssp SSEEEEEEGGGSEEETTEEE--GGGSSS-GGGEEEEES-GGGGTTSGGGEEE----SSCHTT--HHHHHHHHHHHHHTHS
T ss_pred cccccccccccccccccccccchHHHhhccccEEEEeCCHHHeeccCCceEEeccccCCCcchhHHHHHHHHHHHhCccc
Confidence 89999999999999888889999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CcH
Q 012551 448 DVR 450 (461)
Q Consensus 448 DVR 450 (461)
|||
T Consensus 157 Dvr 159 (159)
T PF03031_consen 157 DVR 159 (159)
T ss_dssp -CH
T ss_pred CCC
Confidence 998
No 4
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=100.00 E-value=2.4e-36 Score=286.98 Aligned_cols=158 Identities=23% Similarity=0.281 Sum_probs=136.3
Q ss_pred CCCceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcCCChHHHHHHHHHH
Q 012551 285 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDIL 364 (461)
Q Consensus 285 ~~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk~YEIVIfTas~~~YA~~ILd~L 364 (461)
..+|+||||||||||||+.+. ....++.+|||+++||++++++|||+||||+++.||+.+++.|
T Consensus 18 ~~~kklLVLDLDeTLvh~~~~----------------~~~~~~~kRP~l~eFL~~~~~~feIvVwTAa~~~ya~~~l~~l 81 (195)
T TIGR02245 18 REGKKLLVLDIDYTLFDHRSP----------------AETGEELMRPYLHEFLTSAYEDYDIVIWSATSMKWIEIKMTEL 81 (195)
T ss_pred CCCCcEEEEeCCCceEccccc----------------CCCceEEeCCCHHHHHHHHHhCCEEEEEecCCHHHHHHHHHHh
Confidence 567899999999999997421 1245789999999999999999999999999999999999999
Q ss_pred CCCC-CeeeeEEEcccce------eeCCc-eeeeccccC------CCCCcEEEEECCchhhccCCCceeeeccccC----
Q 012551 365 DPDG-KLISRRVYRESCI------FSDGT-YTKDLTVLG------VDLAKVAIIDNSPQVFRLQVNNGIPIESWFD---- 426 (461)
Q Consensus 365 DP~~-klf~~RLyRe~C~------~~~g~-yiKDLs~Lg------rDLskVVIIDDsp~~~~~qp~NgIpI~s~~g---- 426 (461)
++.+ .-+..++++++|. ...|. ++|||+.++ +++++||||||+|.++.+||+|||+|++|++
T Consensus 82 ~~~~~~~~~i~~~ld~~~~~~~~~~~~g~~~vKdL~~lw~~l~~~~~~~ntiiVDd~p~~~~~~P~N~i~I~~f~~~~~~ 161 (195)
T TIGR02245 82 GVLTNPNYKITFLLDSTAMITVHTPRRGKFDVKPLGVIWALLPEFYSMKNTIMFDDLRRNFLMNPQNGLKIRPFKKAHAN 161 (195)
T ss_pred cccCCccceEEEEeccccceeeEeeccCcEEEeecHHhhhhcccCCCcccEEEEeCCHHHHhcCCCCccccCCccccCCC
Confidence 8643 2355666778873 23454 599999873 3889999999999999999999999999995
Q ss_pred CCCchHHHHHHHHHHHccCCCCcHHHHHhhhC
Q 012551 427 DPSDCSLISLLPFLDILADAEDVRPIIAKTFG 458 (461)
Q Consensus 427 d~~D~eLl~LlpfLe~L~~~~DVR~iL~krf~ 458 (461)
+..|+||+.|+|||+.|+.++|||++++++|.
T Consensus 162 ~~~D~eL~~L~~yL~~la~~~Dvr~~~~~~w~ 193 (195)
T TIGR02245 162 RGTDQELLKLTQYLKTIAELEDFSSLDHKEWE 193 (195)
T ss_pred CcccHHHHHHHHHHHHHhcCcccchhhhcccc
Confidence 57999999999999999999999999998885
No 5
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=99.97 E-value=5.9e-32 Score=273.38 Aligned_cols=161 Identities=35% Similarity=0.665 Sum_probs=151.5
Q ss_pred ccCCCCceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcCCChHHHHHHH
Q 012551 282 ETQGRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLL 361 (461)
Q Consensus 282 ~~~~~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk~YEIVIfTas~~~YA~~IL 361 (461)
++..++++||||+|.++|||..|.. ..+|.+++|||++.||..++++|||||||+.+..||.+|+
T Consensus 183 pPy~Qp~yTLVleledvLVhpdws~---------------~tGwRf~kRPgvD~FL~~~a~~yEIVi~sse~gmt~~pl~ 247 (393)
T KOG2832|consen 183 PPYEQPPYTLVLELEDVLVHPDWSY---------------KTGWRFKKRPGVDYFLGHLAKYYEIVVYSSEQGMTVFPLL 247 (393)
T ss_pred CcccCCCceEEEEeeeeEeccchhh---------------hcCceeccCchHHHHHHhhcccceEEEEecCCccchhhhH
Confidence 4557889999999999999998863 4689999999999999999999999999999999999999
Q ss_pred HHHCCCCCeeeeEEEcccceeeCCceeeeccccCCCCCcEEEEECCchhhccCCCceeeeccccCCCCchHHHHHHHHHH
Q 012551 362 DILDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIESWFDDPSDCSLISLLPFLD 441 (461)
Q Consensus 362 d~LDP~~klf~~RLyRe~C~~~~g~yiKDLs~LgrDLskVVIIDDsp~~~~~qp~NgIpI~s~~gd~~D~eLl~LlpfLe 441 (461)
+.|||.| +|+++|+|++|.+.+|..+|||+.|+||+++||+||-.+..+.+||+|+|++++|.|+.+|+.|++|++||+
T Consensus 248 d~lDP~g-~IsYkLfr~~t~y~~G~HvKdls~LNRdl~kVivVd~d~~~~~l~P~N~l~l~~W~Gn~dDt~L~dL~~FL~ 326 (393)
T KOG2832|consen 248 DALDPKG-YISYKLFRGATKYEEGHHVKDLSKLNRDLQKVIVVDFDANSYKLQPENMLPLEPWSGNDDDTSLFDLLAFLE 326 (393)
T ss_pred hhcCCcc-eEEEEEecCcccccCccchhhhhhhccccceeEEEEccccccccCcccccccCcCCCCcccchhhhHHHHHH
Confidence 9999997 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccC--CCCcHHHHHhhhCC
Q 012551 442 ILAD--AEDVRPIIAKTFGN 459 (461)
Q Consensus 442 ~L~~--~~DVR~iL~krf~~ 459 (461)
.|+. ++|||++|+ .|..
T Consensus 327 ~ia~~~~eDvR~vL~-~y~~ 345 (393)
T KOG2832|consen 327 YIAQQQVEDVRPVLQ-SYSQ 345 (393)
T ss_pred HHHHccHHHHHHHHH-Hhcc
Confidence 9985 899999994 5543
No 6
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=99.97 E-value=3.3e-31 Score=243.25 Aligned_cols=138 Identities=31% Similarity=0.449 Sum_probs=117.7
Q ss_pred CCCceEEEEecccccccccccccCCCCce------------EEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcCC
Q 012551 285 GRKSVTLVLDLDETLVHSTLEYCDDADFT------------FTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTAS 352 (461)
Q Consensus 285 ~~kK~tLVLDLDeTLVhSs~~~~~~~df~------------~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk~YEIVIfTas 352 (461)
.++|++||||||||||||+..+....... -...|......+++++|||+++||+++++.|+++|||++
T Consensus 3 ~~~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~yel~I~T~~ 82 (156)
T TIGR02250 3 REKKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKLYEMHVYTMG 82 (156)
T ss_pred cCCceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhhcEEEEEeCC
Confidence 57899999999999999987654322111 012233335678999999999999999999999999999
Q ss_pred ChHHHHHHHHHHCCCCCeeeeEE-EcccceeeCCceeeecc-ccCCCCCcEEEEECCchhhccCCCceeeecccc
Q 012551 353 QSIYAAQLLDILDPDGKLISRRV-YRESCIFSDGTYTKDLT-VLGVDLAKVAIIDNSPQVFRLQVNNGIPIESWF 425 (461)
Q Consensus 353 ~~~YA~~ILd~LDP~~klf~~RL-yRe~C~~~~g~yiKDLs-~LgrDLskVVIIDDsp~~~~~qp~NgIpI~s~~ 425 (461)
.+.||++|++.|||.+.+|.+|+ +|++|. |.+.|||+ .+|+++++||||||++.+|..||+|+|+|++|.
T Consensus 83 ~~~yA~~vl~~ldp~~~~F~~ri~~rd~~~---~~~~KdL~~i~~~d~~~vvivDd~~~~~~~~~~N~i~i~~~~ 154 (156)
T TIGR02250 83 TRAYAQAIAKLIDPDGKYFGDRIISRDESG---SPHTKSLLRLFPADESMVVIIDDREDVWPWHKRNLIQIEPYN 154 (156)
T ss_pred cHHHHHHHHHHhCcCCCeeccEEEEeccCC---CCccccHHHHcCCCcccEEEEeCCHHHhhcCccCEEEeCCcc
Confidence 99999999999999998997765 599995 78899994 569999999999999999999999999999995
No 7
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.95 E-value=2e-28 Score=252.49 Aligned_cols=177 Identities=45% Similarity=0.743 Sum_probs=166.3
Q ss_pred CCccCCCCceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcCCChHHHHH
Q 012551 280 PKETQGRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQ 359 (461)
Q Consensus 280 P~~~~~~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk~YEIVIfTas~~~YA~~ 359 (461)
|......++++|++|||+||+|+....+...+|...+......+.+||.+||++++||..++++|++++||++.+.||++
T Consensus 204 ~~~~~~~~~k~L~l~lde~l~~S~~~~~~~~df~~~~e~~~~~~~~~v~kRp~l~~fl~~ls~~~~l~~ft~s~~~y~~~ 283 (390)
T COG5190 204 PVSKSTSPKKTLVLDLDETLVHSSFRYITLLDFLVKVEISLLQHLVYVSKRPELDYFLGKLSKIHELVYFTASVKRYADP 283 (390)
T ss_pred hhhcCCCCccccccCCCccceeeccccccccchhhccccccceeEEEEcCChHHHHHHhhhhhhEEEEEEecchhhhcch
Confidence 33445677889999999999999988888888888887777889999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCeeeeEEEcccceeeCCceeeeccccCCCCCcEEEEECCchhhccCCCceeeeccccCCCCchHHHHHHHH
Q 012551 360 LLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIESWFDDPSDCSLISLLPF 439 (461)
Q Consensus 360 ILd~LDP~~klf~~RLyRe~C~~~~g~yiKDLs~LgrDLskVVIIDDsp~~~~~qp~NgIpI~s~~gd~~D~eLl~Llpf 439 (461)
|++.|++.+ .|++++||++|....|.|+|||..+||++.+|||||++|.+|.++|+|+|+|++|.+++.|.+|++|+++
T Consensus 284 v~d~l~~~k-~~~~~lfr~sc~~~~G~~ikDis~i~r~l~~viiId~~p~SY~~~p~~~i~i~~W~~d~~d~el~~ll~~ 362 (390)
T COG5190 284 VLDILDSDK-VFSHRLFRESCVSYLGVYIKDISKIGRSLDKVIIIDNSPASYEFHPENAIPIEKWISDEHDDELLNLLPF 362 (390)
T ss_pred HHHhccccc-eeehhhhcccceeccCchhhhHHhhccCCCceEEeeCChhhhhhCccceeccCcccccccchhhhhhccc
Confidence 999999998 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccC--CCCcHHHHHhhh
Q 012551 440 LDILAD--AEDVRPIIAKTF 457 (461)
Q Consensus 440 Le~L~~--~~DVR~iL~krf 457 (461)
|+.|.. ..||+.++..+-
T Consensus 363 le~L~~~~~~d~~~~l~~~~ 382 (390)
T COG5190 363 LEDLPDRDLKDVSSILQSRL 382 (390)
T ss_pred ccccccccchhhhhhhhhhh
Confidence 999997 899999987664
No 8
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.94 E-value=2.6e-26 Score=207.39 Aligned_cols=145 Identities=49% Similarity=0.857 Sum_probs=129.6
Q ss_pred CceEEEEeccccccccccc---ccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcCCChHHHHHHHHH
Q 012551 287 KSVTLVLDLDETLVHSTLE---YCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDI 363 (461)
Q Consensus 287 kK~tLVLDLDeTLVhSs~~---~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk~YEIVIfTas~~~YA~~ILd~ 363 (461)
||++|||||||||||+... +.....+...+.+......+++++|||+.+||++|.+.|+++|||++.+.||+.+++.
T Consensus 1 ~k~~lvldld~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~~~~~l~I~Ts~~~~~~~~il~~ 80 (148)
T smart00577 1 KKKTLVLDLDETLVHSTHRSFKEWTNRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRASELFELVVFTAGLRMYADPVLDL 80 (148)
T ss_pred CCcEEEEeCCCCeECCCCCcCCCCCccceEEEEEeCCceEEEEEEECCCHHHHHHHHHhccEEEEEeCCcHHHHHHHHHH
Confidence 5889999999999999632 2233445566667777888999999999999999999999999999999999999999
Q ss_pred HCCCCCeeeeEEEcccceeeCCceeeeccccCCCCCcEEEEECCchhhccCCCceeeeccccCCCCch
Q 012551 364 LDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIESWFDDPSDC 431 (461)
Q Consensus 364 LDP~~klf~~RLyRe~C~~~~g~yiKDLs~LgrDLskVVIIDDsp~~~~~qp~NgIpI~s~~gd~~D~ 431 (461)
+++.+.+|...+++++|...++.|.|+|+++|++++++|+|||++..|..++.|||+|++|.++++|+
T Consensus 81 l~~~~~~f~~i~~~~d~~~~KP~~~k~l~~l~~~p~~~i~i~Ds~~~~~aa~~ngI~i~~f~~~~~d~ 148 (148)
T smart00577 81 LDPKKYFGYRRLFRDECVFVKGKYVKDLSLLGRDLSNVIIIDDSPDSWPFHPENLIPIKPWFGDPDDT 148 (148)
T ss_pred hCcCCCEeeeEEECccccccCCeEeecHHHcCCChhcEEEEECCHHHhhcCccCEEEecCcCCCCCCC
Confidence 99976677899999999988878999999999999999999999999999999999999999998874
No 9
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.81 E-value=3.9e-20 Score=200.39 Aligned_cols=137 Identities=31% Similarity=0.440 Sum_probs=108.7
Q ss_pred CCceEEEEecccccccccccccC--------CCCc-------eEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEc
Q 012551 286 RKSVTLVLDLDETLVHSTLEYCD--------DADF-------TFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFT 350 (461)
Q Consensus 286 ~kK~tLVLDLDeTLVhSs~~~~~--------~~df-------~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk~YEIVIfT 350 (461)
++++.||+|||.||+|+...+.. .... .+.+........+||++|||+++||++++++||++|||
T Consensus 144 ~~~L~lv~Dld~tllh~~~~~~l~e~~~~l~~~~~~~~sn~dl~~~~~~~~~~~~~vKlRP~~~efL~~~sklfemhVyT 223 (635)
T KOG0323|consen 144 RKKLHLVLDLDHTLLHTILKSDLSETEKYLKEEAESVESNKDLFRFNPLGHDTEYLVKLRPFVHEFLKEANKLFEMHVYT 223 (635)
T ss_pred hhcceeehhhhhHHHHhhccchhhhhhhhcccccccccccccceeecccCCCceEEEEeCccHHHHHHHHHhhceeEEEe
Confidence 34479999999999999843211 0000 01111113334689999999999999999999999999
Q ss_pred CCChHHHHHHHHHHCCCCCeeeeEEE-cccceeeCCceeeecccc-CCCCCcEEEEECCchhhccCCCceeeecccc
Q 012551 351 ASQSIYAAQLLDILDPDGKLISRRVY-RESCIFSDGTYTKDLTVL-GVDLAKVAIIDNSPQVFRLQVNNGIPIESWF 425 (461)
Q Consensus 351 as~~~YA~~ILd~LDP~~klf~~RLy-Re~C~~~~g~yiKDLs~L-grDLskVVIIDDsp~~~~~qp~NgIpI~s~~ 425 (461)
.|.+.||..|++.|||.|+||++|++ |+. ....-.+||..+ .++.++||||||+..+|..++.|.|.|.+|.
T Consensus 224 mg~R~YA~~i~~liDP~~~lF~dRIisrde---~~~~kt~dL~~~~p~g~smvvIIDDr~dVW~~~~~nLI~i~~y~ 297 (635)
T KOG0323|consen 224 MGTRDYALEIAKLIDPEGKYFGDRIISRDE---SPFFKTLDLVLLFPCGDSMVVIIDDRSDVWPDHKRNLIQIAPYP 297 (635)
T ss_pred ccchHHHHHHHHHhCCCCccccceEEEecC---CCcccccccccCCCCCCccEEEEeCccccccCCCcceEEeeeee
Confidence 99999999999999999999999987 665 334556777766 4677889999999999999998999999984
No 10
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=98.43 E-value=5.3e-07 Score=84.89 Aligned_cols=137 Identities=14% Similarity=0.063 Sum_probs=90.4
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecc---eeeeEEEeeCchHHHHHHHhh-cccEEEEEcCC-ChHHHHHHHHH
Q 012551 289 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNM---KEHTVYVKQRPHLKTFLERVA-EMFEVVIFTAS-QSIYAAQLLDI 363 (461)
Q Consensus 289 ~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~---~~~~~~V~~RPgL~eFLe~Ls-k~YEIVIfTas-~~~YA~~ILd~ 363 (461)
.++|||||+||..-..-.....-+...-..++ ......+.++||+.++|++|. +.+.+.|.|++ ...++..+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~ 82 (174)
T TIGR01685 3 RVIVFDLDGTLWDHYMISLLGGPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGT 82 (174)
T ss_pred cEEEEeCCCCCcCcccccccCCCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHh
Confidence 47899999999654422222111110000000 112345788999999999998 66999999988 99999999999
Q ss_pred HCCC--C------CeeeeEEEcccceeeCC--ceeeeccc-c--CCCCCcEEEEECCchhhccCCCceeeecccc
Q 012551 364 LDPD--G------KLISRRVYRESCIFSDG--TYTKDLTV-L--GVDLAKVAIIDNSPQVFRLQVNNGIPIESWF 425 (461)
Q Consensus 364 LDP~--~------klf~~RLyRe~C~~~~g--~yiKDLs~-L--grDLskVVIIDDsp~~~~~qp~NgIpI~s~~ 425 (461)
++.. | .+|...+..+.....+. ...+-+.. + |-+++++++|||++........+|+.+--..
T Consensus 83 ~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~i~v~ 157 (174)
T TIGR01685 83 FEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKVNKVDPSVLKPAQILFFDDRTDNVREVWGYGVTSCYCP 157 (174)
T ss_pred CCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHhhhcccCCCCHHHeEEEcChhHhHHHHHHhCCEEEEcC
Confidence 9865 1 47877777543211111 11122222 2 5788999999999998877778888776553
No 11
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=98.39 E-value=1.6e-07 Score=98.12 Aligned_cols=136 Identities=30% Similarity=0.462 Sum_probs=102.7
Q ss_pred CCCceEEEEecccccccccccccC----------CCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcCCCh
Q 012551 285 GRKSVTLVLDLDETLVHSTLEYCD----------DADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQS 354 (461)
Q Consensus 285 ~~kK~tLVLDLDeTLVhSs~~~~~----------~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk~YEIVIfTas~~ 354 (461)
..++..||.|+|.|.+|+...+.. .-.+.....+......++++.||++..|+...++.||+.+||.|.+
T Consensus 23 q~~~~~l~~~~~~~~~h~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~i~~~~e~~~~~~~~~ 102 (390)
T COG5190 23 QDKKLILVVDLDQTIIHTTVDPNDPNNVNQSLERTLKSVNDRDPVQEKCAYYVKARPKLFPFLTKISPLYELHIYTMGTR 102 (390)
T ss_pred cCcccccccccccceecccccCCCCCchhhhhhccccchhccccccccccceeeecccccchhhhhchhcceeeEeeccc
Confidence 456778999999999999865511 0011111122223456889999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCeeeeEEEcccceeeCCceeeecccc-CCCCCcEEEEECCchhh---ccCCCceeeecc
Q 012551 355 IYAAQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVL-GVDLAKVAIIDNSPQVF---RLQVNNGIPIES 423 (461)
Q Consensus 355 ~YA~~ILd~LDP~~klf~~RLyRe~C~~~~g~yiKDLs~L-grDLskVVIIDDsp~~~---~~qp~NgIpI~s 423 (461)
.||+.+.+++||.|++|..|....+ ...+.-.|-++++ ..+...++++||++..| ... .|.++..+
T Consensus 103 ~~~~~~~~i~d~~g~~~~d~~~~~~--~~~~~~~~s~~~l~p~~~n~~vi~~d~~~~~~~~d~~-~~~v~~~~ 172 (390)
T COG5190 103 AYAERIAKIIDPTGKLFNDRILSRD--ESGSLSQKSLSRLFPKDQNMVVIIDDRGDVWGVGDMN-SNFVAKSP 172 (390)
T ss_pred cchhhhhhccccccccccccccccc--ccccchhhhhhhcCccccccccccccccccCCccchh-hhhhcccc
Confidence 9999999999999999988776332 2334456777766 67889999999999999 333 35666666
No 12
>COG4996 Predicted phosphatase [General function prediction only]
Probab=98.36 E-value=1.3e-06 Score=79.42 Aligned_cols=137 Identities=15% Similarity=0.058 Sum_probs=97.1
Q ss_pred EEEEecccccccccccccCCCCceEEEEecc-----eeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHH
Q 012551 290 TLVLDLDETLVHSTLEYCDDADFTFTVFFNM-----KEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDI 363 (461)
Q Consensus 290 tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~-----~~~~~~V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~ 363 (461)
.+|||+|+||-. +.+...+.-|.+.-. ...+.-|.+||++.+||+++. ..|-+..+|.....-|-++|.+
T Consensus 2 ~i~~d~d~t~wd----hh~iSsl~pPf~rVs~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLra 77 (164)
T COG4996 2 AIVFDADKTLWD----HHNISSLEPPFRRVSSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRA 77 (164)
T ss_pred cEEEeCCCcccc----cccchhcCCcceecCccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHH
Confidence 589999999954 333222221211100 123567999999999999999 5599999999999999999999
Q ss_pred HCCCCCeeeeEEEcccceeeCCceeeecccc------CCCCCcEEEEECCchhh---ccCCCceeeeccccCCCCchH
Q 012551 364 LDPDGKLISRRVYRESCIFSDGTYTKDLTVL------GVDLAKVAIIDNSPQVF---RLQVNNGIPIESWFDDPSDCS 432 (461)
Q Consensus 364 LDP~~klf~~RLyRe~C~~~~g~yiKDLs~L------grDLskVVIIDDsp~~~---~~qp~NgIpI~s~~gd~~D~e 432 (461)
||... ||.+.+...|.. ...+..+-|+.+ ...++++|.+||+...+ .....|.=.++.|.+-+.=.+
T Consensus 78 l~~~~-yFhy~ViePhP~-K~~ML~~llr~i~~er~~~ikP~~Ivy~DDR~iH~~~Iwe~~G~V~~~~~~~Di~c~~e 153 (164)
T COG4996 78 LDLLQ-YFHYIVIEPHPY-KFLMLSQLLREINTERNQKIKPSEIVYLDDRRIHFGNIWEYLGNVKCLEMWKDISCYSE 153 (164)
T ss_pred hchhh-hEEEEEecCCCh-hHHHHHHHHHHHHHhhccccCcceEEEEecccccHHHHHHhcCCeeeeEeecchHHHHH
Confidence 99987 898888877652 112222333332 34788999999999776 457788888999987643333
No 13
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=98.33 E-value=3e-07 Score=81.54 Aligned_cols=111 Identities=14% Similarity=0.122 Sum_probs=74.5
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCC-ChHHHHHHHHHHCC
Q 012551 289 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTAS-QSIYAAQLLDILDP 366 (461)
Q Consensus 289 ~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Ls-k~YEIVIfTas-~~~YA~~ILd~LDP 366 (461)
+.||+||||||...-..... .+-. .. . . ...||+.++|+++. +.+.++|.|++ .+.++..+++.+.+
T Consensus 1 kli~~DlD~Tl~~~~~~~~~-~~~~----~~-~--~---~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~ 69 (128)
T TIGR01681 1 KVIVFDLDNTLWTGENIVVG-EDPI----ID-L--E---VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFED 69 (128)
T ss_pred CEEEEeCCCCCCCCCccccc-CCcc----hh-h--H---HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccc
Confidence 37899999999866210000 0000 00 0 0 56899999999997 56999999999 89999999998762
Q ss_pred ------CCCeeeeEEEcccceeeCCceeeeccccC--CCCCcEEEEECCchhh
Q 012551 367 ------DGKLISRRVYRESCIFSDGTYTKDLTVLG--VDLAKVAIIDNSPQVF 411 (461)
Q Consensus 367 ------~~klf~~RLyRe~C~~~~g~yiKDLs~Lg--rDLskVVIIDDsp~~~ 411 (461)
-..+|...+..+.- .....+.+-+..+| ..++++++|||++...
T Consensus 70 ~~~i~~l~~~f~~~~~~~~~-pkp~~~~~a~~~lg~~~~p~~~l~igDs~~n~ 121 (128)
T TIGR01681 70 FGIIFPLAEYFDPLTIGYWL-PKSPRLVEIALKLNGVLKPKSILFVDDRPDNN 121 (128)
T ss_pred cccchhhHhhhhhhhhcCCC-cHHHHHHHHHHHhcCCCCcceEEEECCCHhHH
Confidence 12245444433221 11124556667789 9999999999998753
No 14
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=98.14 E-value=9.7e-07 Score=83.23 Aligned_cols=95 Identities=13% Similarity=0.130 Sum_probs=77.7
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccceeeC---CceeeeccccCCCCCcEE
Q 012551 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKVA 402 (461)
Q Consensus 327 V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~---g~yiKDLs~LgrDLskVV 402 (461)
+...||+.++|++|. +.+.++|.|++.+.++..+++.++-.+ +|+..+..+.+...+ ..+.+-++.+|.++++++
T Consensus 81 ~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~-~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~ 159 (214)
T PRK13288 81 VTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDE-FFDVVITLDDVEHAKPDPEPVLKALELLGAKPEEAL 159 (214)
T ss_pred cccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChh-ceeEEEecCcCCCCCCCcHHHHHHHHHcCCCHHHEE
Confidence 667899999999998 469999999999999999999998775 898888776654333 245666778888999999
Q ss_pred EEECCchhhccCCCceeeec
Q 012551 403 IIDNSPQVFRLQVNNGIPIE 422 (461)
Q Consensus 403 IIDDsp~~~~~qp~NgIpI~ 422 (461)
+|+|++.-......+|++.-
T Consensus 160 ~iGDs~~Di~aa~~aG~~~i 179 (214)
T PRK13288 160 MVGDNHHDILAGKNAGTKTA 179 (214)
T ss_pred EECCCHHHHHHHHHCCCeEE
Confidence 99999987766666777644
No 15
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=98.12 E-value=1.9e-06 Score=72.36 Aligned_cols=107 Identities=21% Similarity=0.268 Sum_probs=73.2
Q ss_pred EEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcc-cEEEEEcCCChHHHHHHHHHHCCCC
Q 012551 290 TLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEM-FEVVIFTASQSIYAAQLLDILDPDG 368 (461)
Q Consensus 290 tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk~-YEIVIfTas~~~YA~~ILd~LDP~~ 368 (461)
++|||+||||........ ....+..+|++.++|+++.+. +.++|.|++.+.++..+++.+....
T Consensus 1 ~~vfD~D~tl~~~~~~~~---------------~~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~~ 65 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIA---------------EIEELELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDD 65 (139)
T ss_pred CeEEccCCceEccCcccc---------------ccccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCch
Confidence 479999999987642110 023467899999999999975 9999999999999999999986543
Q ss_pred CeeeeEEEcccceee----------------CC---ceeeeccccCCCCCcEEEEECCchhhc
Q 012551 369 KLISRRVYRESCIFS----------------DG---TYTKDLTVLGVDLAKVAIIDNSPQVFR 412 (461)
Q Consensus 369 klf~~RLyRe~C~~~----------------~g---~yiKDLs~LgrDLskVVIIDDsp~~~~ 412 (461)
++...+..+..... ++ .+.+-++.++...+.++.|+|++.-..
T Consensus 66 -~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igD~~~d~~ 127 (139)
T cd01427 66 -YFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPDKLLAALKLLGVDPEEVLMVGDSLNDIE 127 (139)
T ss_pred -hhhheeccchhhhhcccccccccccccccCCCCHHHHHHHHHHcCCChhhEEEeCCCHHHHH
Confidence 34444443222111 11 122233445667889999999996543
No 16
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=98.05 E-value=2.2e-06 Score=82.51 Aligned_cols=93 Identities=15% Similarity=0.164 Sum_probs=75.8
Q ss_pred EeeCchHHHHHHHhhc-ccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccceeeCC---ceeeeccccCCCCCcEE
Q 012551 327 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDG---TYTKDLTVLGVDLAKVA 402 (461)
Q Consensus 327 V~~RPgL~eFLe~Lsk-~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~g---~yiKDLs~LgrDLskVV 402 (461)
+...||+.++|+.|.+ .+.+.|-|++.+.++...++.++-.. +|+..+..+.....+. .|.+-++++|.++++++
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~-~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l 170 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDA-HLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAERTL 170 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHH-HCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChHHEE
Confidence 5678999999999985 59999999999999999999887654 7888887655443332 45666788899999999
Q ss_pred EEECCchhhccCCCceee
Q 012551 403 IIDNSPQVFRLQVNNGIP 420 (461)
Q Consensus 403 IIDDsp~~~~~qp~NgIp 420 (461)
+|+|++........+|+.
T Consensus 171 ~igDs~~di~aA~~aG~~ 188 (224)
T PRK14988 171 FIDDSEPILDAAAQFGIR 188 (224)
T ss_pred EEcCCHHHHHHHHHcCCe
Confidence 999999877666677775
No 17
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=98.05 E-value=3.9e-06 Score=73.44 Aligned_cols=114 Identities=20% Similarity=0.205 Sum_probs=76.1
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCC--------hHHHHH
Q 012551 289 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQ--------SIYAAQ 359 (461)
Q Consensus 289 ~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Ls-k~YEIVIfTas~--------~~YA~~ 359 (461)
+.|+||+||||++.... . .........|++.++|++|. +.+.++|.|++. ..++..
T Consensus 1 k~~~~D~dgtL~~~~~~--~-------------~~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~ 65 (132)
T TIGR01662 1 KGVVLDLDGTLTDDVPY--V-------------DDEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVAR 65 (132)
T ss_pred CEEEEeCCCceecCCCC--C-------------CCHHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHH
Confidence 37899999999963100 0 00112467899999999997 559999999999 888999
Q ss_pred HHHHHCCCCCeeeeEEEcccce-eeCCceeeecccc-CCCCCcEEEEEC-CchhhccCCCceee
Q 012551 360 LLDILDPDGKLISRRVYRESCI-FSDGTYTKDLTVL-GVDLAKVAIIDN-SPQVFRLQVNNGIP 420 (461)
Q Consensus 360 ILd~LDP~~klf~~RLyRe~C~-~~~g~yiKDLs~L-grDLskVVIIDD-sp~~~~~qp~NgIp 420 (461)
+++.+... +...++..... .....|.+-++.+ +.++++++.|+| ...-......+|+.
T Consensus 66 ~l~~~~l~---~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v~IGD~~~~Di~~A~~~Gi~ 126 (132)
T TIGR01662 66 RLEELGVP---IDVLYACPHCRKPKPGMFLEALKRFNEIDPEESVYVGDQDLTDLQAAKRAGLA 126 (132)
T ss_pred HHHHCCCC---EEEEEECCCCCCCChHHHHHHHHHcCCCChhheEEEcCCCcccHHHHHHCCCe
Confidence 99998764 22222322111 1112455667778 589999999999 56555444445543
No 18
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=97.96 E-value=2.2e-05 Score=79.80 Aligned_cols=73 Identities=16% Similarity=0.185 Sum_probs=60.6
Q ss_pred CCCceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeC-chHHHHHHHhhcc-cEEEEEcCCChHHHHHHHH
Q 012551 285 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQR-PHLKTFLERVAEM-FEVVIFTASQSIYAAQLLD 362 (461)
Q Consensus 285 ~~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~R-PgL~eFLe~Lsk~-YEIVIfTas~~~YA~~ILd 362 (461)
...+..+|+||||||+-... -|..| ||+.++|++|.+. +.++|||++.++++..+++
T Consensus 123 ~~~~kvIvFDLDgTLi~~~~---------------------~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~ 181 (301)
T TIGR01684 123 FEPPHVVVFDLDSTLITDEE---------------------PVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMR 181 (301)
T ss_pred cccceEEEEecCCCCcCCCC---------------------ccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHH
Confidence 34567999999999986531 26689 9999999999965 8999999999999999999
Q ss_pred HHCCCCCeeeeEEEccc
Q 012551 363 ILDPDGKLISRRVYRES 379 (461)
Q Consensus 363 ~LDP~~klf~~RLyRe~ 379 (461)
.++..+ +|...+..++
T Consensus 182 ~lGLd~-YFdvIIs~Gd 197 (301)
T TIGR01684 182 KVKLDR-YFDIIISGGH 197 (301)
T ss_pred HcCCCc-ccCEEEECCc
Confidence 999986 7766666443
No 19
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=97.92 E-value=4.3e-05 Score=77.78 Aligned_cols=123 Identities=16% Similarity=0.196 Sum_probs=86.2
Q ss_pred CCCceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeC-chHHHHHHHhhc-ccEEEEEcCCChHHHHHHHH
Q 012551 285 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQR-PHLKTFLERVAE-MFEVVIFTASQSIYAAQLLD 362 (461)
Q Consensus 285 ~~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~R-PgL~eFLe~Lsk-~YEIVIfTas~~~YA~~ILd 362 (461)
...++.+|+||||||+.... -|..| |++.++|++|.+ .+.++|+|++.++++..+++
T Consensus 125 ~~~~~~i~~D~D~TL~~~~~---------------------~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le 183 (303)
T PHA03398 125 WEIPHVIVFDLDSTLITDEE---------------------PVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLK 183 (303)
T ss_pred eeeccEEEEecCCCccCCCC---------------------ccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHH
Confidence 35667999999999987631 26779 999999999995 59999999999999999999
Q ss_pred HHCCCCCeeeeEEEcccceee----------------CCceeeecc---c--------------cCCCC-CcEEEEECCc
Q 012551 363 ILDPDGKLISRRVYRESCIFS----------------DGTYTKDLT---V--------------LGVDL-AKVAIIDNSP 408 (461)
Q Consensus 363 ~LDP~~klf~~RLyRe~C~~~----------------~g~yiKDLs---~--------------LgrDL-skVVIIDDsp 408 (461)
.++..+ +|...+..++.... ...+..|.. . .|..- +-+-+|||-+
T Consensus 184 ~lgL~~-yFDvII~~g~i~~k~~~~~~~d~~~~~~~~~~~f~~d~~~~~~lPKSprvVl~yL~~~gvn~~KtiTLVDDl~ 262 (303)
T PHA03398 184 ETKLEG-YFDIIICGGRKAGEYSRRVIVDNKYKMVFVKKPFYLDVTDVKNLPKSPRVVLWYLRKKGVNYFKTITLVDDLK 262 (303)
T ss_pred HcCCCc-cccEEEECCCcccccccceeecccceeEEecCceeEeCCcccCCCCCCeehHHHHHHcCcceeccEEEeccCc
Confidence 999875 77666554443221 122333433 2 24433 3456888877
Q ss_pred hhhccCCCceeeeccccCCCCc
Q 012551 409 QVFRLQVNNGIPIESWFDDPSD 430 (461)
Q Consensus 409 ~~~~~qp~NgIpI~s~~gd~~D 430 (461)
.. ...-+|-+.++..-...+|
T Consensus 263 ~N-n~~YD~fv~v~rcp~P~~D 283 (303)
T PHA03398 263 SN-NYSYDYFVNVKRCPEPVND 283 (303)
T ss_pred cc-CccceeEEEeeeCCCCcHH
Confidence 53 3566777877776554444
No 20
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=97.87 E-value=3.8e-06 Score=83.93 Aligned_cols=94 Identities=11% Similarity=0.086 Sum_probs=69.5
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccceeeCCceeeeccccCCCCCcEEEEE
Q 012551 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIID 405 (461)
Q Consensus 327 V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~g~yiKDLs~LgrDLskVVIID 405 (461)
+...||+.++|++|. +.+.+.|.|++.+.++..+++.++... +|...+..+........+.+-+..++.+++++++|+
T Consensus 141 ~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~-~F~~vi~~~~~~~k~~~~~~~l~~~~~~p~~~l~IG 219 (273)
T PRK13225 141 LQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRS-LFSVVQAGTPILSKRRALSQLVAREGWQPAAVMYVG 219 (273)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChh-heEEEEecCCCCCCHHHHHHHHHHhCcChhHEEEEC
Confidence 456799999999998 569999999999999999999998765 787665543321111123344456688889999999
Q ss_pred CCchhhccCCCceeee
Q 012551 406 NSPQVFRLQVNNGIPI 421 (461)
Q Consensus 406 Dsp~~~~~qp~NgIpI 421 (461)
|++.-.......|+..
T Consensus 220 Ds~~Di~aA~~AG~~~ 235 (273)
T PRK13225 220 DETRDVEAARQVGLIA 235 (273)
T ss_pred CCHHHHHHHHHCCCeE
Confidence 9997665555566654
No 21
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=97.81 E-value=1.4e-05 Score=72.00 Aligned_cols=116 Identities=20% Similarity=0.265 Sum_probs=75.7
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCCh-------------
Q 012551 289 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQS------------- 354 (461)
Q Consensus 289 ~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Ls-k~YEIVIfTas~~------------- 354 (461)
++|+||+||||+........ .....+...||+.++|++|. +.|.++|.|++.+
T Consensus 1 ~~~~~d~dgtl~~~~~~~~~-------------~~~~~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~ 67 (147)
T TIGR01656 1 PALFLDRDGVINEDTVSDYP-------------RSLDDWQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRA 67 (147)
T ss_pred CeEEEeCCCceeccCCcccC-------------CCHHHeEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHH
Confidence 37899999999987531100 00112467899999999997 5699999999874
Q ss_pred --HHHHHHHHHHCCCCCeeeeEEEc-----ccceeeC---CceeeeccccCCCCCcEEEEECCchhhccCCCceee
Q 012551 355 --IYAAQLLDILDPDGKLISRRVYR-----ESCIFSD---GTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIP 420 (461)
Q Consensus 355 --~YA~~ILd~LDP~~klf~~RLyR-----e~C~~~~---g~yiKDLs~LgrDLskVVIIDDsp~~~~~qp~NgIp 420 (461)
.++..+++.++.. +...++. +.....+ ..+.+-+..+|.+++++++|.|++.-.......||.
T Consensus 68 ~~~~~~~~l~~~~l~---~~~~~~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi~ 140 (147)
T TIGR01656 68 PNGRVLELLRQLGVA---VDGVLFCPHHPADNCSCRKPKPGLILEALKRLGVDASRSLVVGDRLRDLQAARNAGLA 140 (147)
T ss_pred HHHHHHHHHHhCCCc---eeEEEECCCCCCCCCCCCCCCHHHHHHHHHHcCCChHHEEEEcCCHHHHHHHHHCCCC
Confidence 5667777777653 2222221 1111111 234555667789999999999998766554445554
No 22
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=97.79 E-value=5.1e-06 Score=78.37 Aligned_cols=97 Identities=15% Similarity=0.238 Sum_probs=68.9
Q ss_pred EeeCchHHHHHHHhhc-ccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccce-----------ee-CC-ceeeecc
Q 012551 327 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCI-----------FS-DG-TYTKDLT 392 (461)
Q Consensus 327 V~~RPgL~eFLe~Lsk-~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~-----------~~-~g-~yiKDLs 392 (461)
+..+||+.+||+.+.+ .+.++|.|++...++..+++.+.-.. +|...+.-++.. .. ++ .+.+-++
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 162 (219)
T TIGR00338 84 LPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDA-AFANRLEVEDGKLTGLVEGPIVDASYKGKTLLILLR 162 (219)
T ss_pred CCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCc-eEeeEEEEECCEEEEEecCcccCCcccHHHHHHHHH
Confidence 5689999999999996 69999999999999999999987765 665544321111 00 11 2233345
Q ss_pred ccCCCCCcEEEEECCchhhccCCCceeeecccc
Q 012551 393 VLGVDLAKVAIIDNSPQVFRLQVNNGIPIESWF 425 (461)
Q Consensus 393 ~LgrDLskVVIIDDsp~~~~~qp~NgIpI~s~~ 425 (461)
.+|.++++++.|+|++.-.......|+.+ .|.
T Consensus 163 ~~~~~~~~~i~iGDs~~Di~aa~~ag~~i-~~~ 194 (219)
T TIGR00338 163 KEGISPENTVAVGDGANDLSMIKAAGLGI-AFN 194 (219)
T ss_pred HcCCCHHHEEEEECCHHHHHHHHhCCCeE-EeC
Confidence 66888999999999987665544556665 343
No 23
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=97.79 E-value=3.3e-05 Score=71.48 Aligned_cols=115 Identities=15% Similarity=0.175 Sum_probs=75.3
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCCh-------------
Q 012551 289 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQS------------- 354 (461)
Q Consensus 289 ~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Ls-k~YEIVIfTas~~------------- 354 (461)
+.|+||+||||+-.. .|. ...--+.+.||+.++|++|. +.|.++|.|++..
T Consensus 2 ~~~~~D~Dgtl~~~~-------~~~--------~~~~~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~ 66 (176)
T TIGR00213 2 KAIFLDRDGTINIDH-------GYV--------HEIDNFEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQ 66 (176)
T ss_pred CEEEEeCCCCEeCCC-------CCC--------CCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHH
Confidence 578999999998311 110 01112456799999999998 4599999999885
Q ss_pred --HHHHHHHHHHCCCCCeeeeEEEcc-----------cceeeC---CceeeeccccCCCCCcEEEEECCchhhccCCCce
Q 012551 355 --IYAAQLLDILDPDGKLISRRVYRE-----------SCIFSD---GTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNG 418 (461)
Q Consensus 355 --~YA~~ILd~LDP~~klf~~RLyRe-----------~C~~~~---g~yiKDLs~LgrDLskVVIIDDsp~~~~~qp~Ng 418 (461)
.|...++..+... |...++.. .|...+ ..|.+-++++|.+++++++|+|++.-......+|
T Consensus 67 ~~~~~~~~l~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~v~VGDs~~Di~aA~~aG 143 (176)
T TIGR00213 67 LTEWMDWSLAERDVD---LDGIYYCPHHPEGVEEFRQVCDCRKPKPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVAAK 143 (176)
T ss_pred HHHHHHHHHHHcCCC---ccEEEECCCCCcccccccCCCCCCCCCHHHHHHHHHHcCcChhhEEEEcCCHHHHHHHHHCC
Confidence 3444445444322 44444322 222222 2456667788999999999999998776655677
Q ss_pred eee
Q 012551 419 IPI 421 (461)
Q Consensus 419 IpI 421 (461)
+..
T Consensus 144 ~~~ 146 (176)
T TIGR00213 144 VKT 146 (176)
T ss_pred CcE
Confidence 653
No 24
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=97.78 E-value=4.1e-05 Score=70.93 Aligned_cols=122 Identities=16% Similarity=0.146 Sum_probs=85.0
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCC---------------
Q 012551 289 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTAS--------------- 352 (461)
Q Consensus 289 ~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk-~YEIVIfTas--------------- 352 (461)
+.|+||.||||++.... .| . ....-.++.-||+.++|++|.+ .|.++|.|+.
T Consensus 2 ~~~~~d~dg~l~~~~~~-----~~--~-----~~~~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~ 69 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPS-----DF--Q-----VDALEKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDG 69 (161)
T ss_pred CEEEEeCCCCccccCCC-----cc--c-----cCCHHHeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHH
Confidence 57999999999884311 00 0 0111146778999999999985 6999999996
Q ss_pred ChHHHHHHHHHHCCCCCeeeeEEEc-----ccceeeCC---ceeeeccccCCCCCcEEEEECCchhhccCCCceeeeccc
Q 012551 353 QSIYAAQLLDILDPDGKLISRRVYR-----ESCIFSDG---TYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIESW 424 (461)
Q Consensus 353 ~~~YA~~ILd~LDP~~klf~~RLyR-----e~C~~~~g---~yiKDLs~LgrDLskVVIIDDsp~~~~~qp~NgIpI~s~ 424 (461)
...++..+++.++.. |...++. +.+...+. .+..-++.+|.+++++++|.|+..-......+|+..-.+
T Consensus 70 ~~~~~~~~l~~~gl~---fd~ii~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~~i~~ 146 (161)
T TIGR01261 70 PHNLMLQIFRSQGII---FDDVLICPHFPDDNCDCRKPKIKLLEPYLKKNLIDKARSYVIGDRETDMQLAENLGIRGIQY 146 (161)
T ss_pred HHHHHHHHHHHCCCc---eeEEEECCCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCeEEEE
Confidence 356788888888774 7666653 44443333 334445567889999999999987665555677776554
Q ss_pred c
Q 012551 425 F 425 (461)
Q Consensus 425 ~ 425 (461)
.
T Consensus 147 ~ 147 (161)
T TIGR01261 147 D 147 (161)
T ss_pred C
Confidence 4
No 25
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=97.77 E-value=5.4e-05 Score=71.26 Aligned_cols=117 Identities=15% Similarity=0.165 Sum_probs=62.9
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecce------eeeEEEeeCchHHHHHHHhh-cccEEEEEcC-CChHHHHH
Q 012551 288 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMK------EHTVYVKQRPHLKTFLERVA-EMFEVVIFTA-SQSIYAAQ 359 (461)
Q Consensus 288 K~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~------~~~~~V~~RPgL~eFLe~Ls-k~YEIVIfTa-s~~~YA~~ 359 (461)
++++|||||.||-..-... ....|++.... ..+.-|.+-|++.+.|+.|. +..+|.+-|. ..+..|.+
T Consensus 3 PklvvFDLD~TlW~~~~~~----~~~~Pf~~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~ 78 (169)
T PF12689_consen 3 PKLVVFDLDYTLWPPWMDT----HVGPPFKKISNGNVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARE 78 (169)
T ss_dssp -SEEEE-STTTSSSS-TTT----SS-S-EEE-TTS--EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHH
T ss_pred CcEEEEcCcCCCCchhHhh----ccCCCceecCCCCEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHH
Confidence 4689999999996543221 12222222222 23456899999999999999 5699999995 56889999
Q ss_pred HHHHHCCC---------CCeeeeEEEcccceeeCCceeeec-cccCCCCCcEEEEECCchhh
Q 012551 360 LLDILDPD---------GKLISRRVYRESCIFSDGTYTKDL-TVLGVDLAKVAIIDNSPQVF 411 (461)
Q Consensus 360 ILd~LDP~---------~klf~~RLyRe~C~~~~g~yiKDL-s~LgrDLskVVIIDDsp~~~ 411 (461)
+|+.|+.. ..+|.+.=.-.. .+...++.| +..|.+.+.++++||.....
T Consensus 79 ~L~~l~i~~~~~~~~~~~~~F~~~eI~~g---sK~~Hf~~i~~~tgI~y~eMlFFDDe~~N~ 137 (169)
T PF12689_consen 79 LLKLLEIDDADGDGVPLIEYFDYLEIYPG---SKTTHFRRIHRKTGIPYEEMLFFDDESRNI 137 (169)
T ss_dssp HHHHTT-C----------CCECEEEESSS----HHHHHHHHHHHH---GGGEEEEES-HHHH
T ss_pred HHHhcCCCccccccccchhhcchhheecC---chHHHHHHHHHhcCCChhHEEEecCchhcc
Confidence 99999877 024433211111 111122222 35689999999999998754
No 26
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=97.75 E-value=6.5e-06 Score=79.45 Aligned_cols=99 Identities=17% Similarity=0.207 Sum_probs=83.5
Q ss_pred EeeCchHHHHHHHhhcc-cEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccceeeCC---ceeeeccccCCCCCcEE
Q 012551 327 VKQRPHLKTFLERVAEM-FEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDG---TYTKDLTVLGVDLAKVA 402 (461)
Q Consensus 327 V~~RPgL~eFLe~Lsk~-YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~g---~yiKDLs~LgrDLskVV 402 (461)
+...||+.+||+.|.+. .-+.+-|++.+..+..+++.+...+ +|..++++++....+. .|.+-.++||.+++++|
T Consensus 85 ~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~-~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P~~Cv 163 (221)
T COG0637 85 LKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLD-YFDVIVTADDVARGKPAPDIYLLAAERLGVDPEECV 163 (221)
T ss_pred CCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChh-hcchhccHHHHhcCCCCCHHHHHHHHHcCCChHHeE
Confidence 78999999999999966 9999999999999999999999886 8999999887665543 68888999999999999
Q ss_pred EEECCchhhccCCCceeeeccccC
Q 012551 403 IIDNSPQVFRLQVNNGIPIESWFD 426 (461)
Q Consensus 403 IIDDsp~~~~~qp~NgIpI~s~~g 426 (461)
+|+|++.-......-|+.+-.+.+
T Consensus 164 viEDs~~Gi~Aa~aAGm~vv~v~~ 187 (221)
T COG0637 164 VVEDSPAGIQAAKAAGMRVVGVPA 187 (221)
T ss_pred EEecchhHHHHHHHCCCEEEEecC
Confidence 999999766555555655555554
No 27
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=97.68 E-value=5.4e-05 Score=76.91 Aligned_cols=108 Identities=17% Similarity=0.121 Sum_probs=73.8
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceeeeE-EEeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHH--
Q 012551 288 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTV-YVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDI-- 363 (461)
Q Consensus 288 K~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~-~V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~-- 363 (461)
+++||+|||+||..-..-.. ...++ .....|++.++|+.|. +.+.+.|.|...+..|..+++.
T Consensus 3 ~k~~v~DlDnTlw~gv~~e~-------------g~~~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~ 69 (320)
T TIGR01686 3 LKVLVLDLDNTLWGGVLGED-------------GIDNLNLSPLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRK 69 (320)
T ss_pred eEEEEEcCCCCCCCCEEccC-------------CccccccCccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCc
Confidence 67999999999975431110 00011 1224789999999998 5699999999999999999998
Q ss_pred --HCCCCCeeeeEEEcccceeeCCceeeeccccCCCCCcEEEEECCchhh
Q 012551 364 --LDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVF 411 (461)
Q Consensus 364 --LDP~~klf~~RLyRe~C~~~~g~yiKDLs~LgrDLskVVIIDDsp~~~ 411 (461)
+.... +|...... .......+.+-++.+|.+++.+|+|||++...
T Consensus 70 ~~~~~~~-~f~~~~~~--~~pk~~~i~~~~~~l~i~~~~~vfidD~~~d~ 116 (320)
T TIGR01686 70 DFILQAE-DFDARSIN--WGPKSESLRKIAKKLNLGTDSFLFIDDNPAER 116 (320)
T ss_pred cccCcHH-HeeEEEEe--cCchHHHHHHHHHHhCCCcCcEEEECCCHHHH
Confidence 54443 45443221 00111234455667899999999999999654
No 28
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=97.62 E-value=0.0001 Score=68.39 Aligned_cols=116 Identities=15% Similarity=0.103 Sum_probs=75.4
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCCh------------
Q 012551 288 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQS------------ 354 (461)
Q Consensus 288 K~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk-~YEIVIfTas~~------------ 354 (461)
.+.|+||+||||+-.... | ..... .+...||+.++|++|++ .|.++|.|++..
T Consensus 3 ~~~~~~d~~~t~~~~~~~------~------~~~~~--~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~ 68 (181)
T PRK08942 3 MKAIFLDRDGVINVDSDG------Y------VKSPD--EWIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLN 68 (181)
T ss_pred ccEEEEECCCCcccCCcc------c------cCCHH--HeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHH
Confidence 468999999999654210 0 01111 24578999999999996 499999998863
Q ss_pred ---HHHHHHHHHHCCCCCeeeeEEEcccc-----eeeC---CceeeeccccCCCCCcEEEEECCchhhccCCCceee
Q 012551 355 ---IYAAQLLDILDPDGKLISRRVYRESC-----IFSD---GTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIP 420 (461)
Q Consensus 355 ---~YA~~ILd~LDP~~klf~~RLyRe~C-----~~~~---g~yiKDLs~LgrDLskVVIIDDsp~~~~~qp~NgIp 420 (461)
.+...+++.++ .+|...++...+ ...+ ..|.+-+..+|.+++++++|.|++.-.......|+.
T Consensus 69 ~~~~~~~~~l~~~g---~~f~~i~~~~~~~~~~~~~~KP~p~~~~~~~~~l~~~~~~~~~VgDs~~Di~~A~~aG~~ 142 (181)
T PRK08942 69 ALHEKMDWSLADRG---GRLDGIYYCPHHPEDGCDCRKPKPGMLLSIAERLNIDLAGSPMVGDSLRDLQAAAAAGVT 142 (181)
T ss_pred HHHHHHHHHHHHcC---CccceEEECCCCCCCCCcCCCCCHHHHHHHHHHcCCChhhEEEEeCCHHHHHHHHHCCCe
Confidence 33344444443 236665554322 2222 245677778899999999999999766544445543
No 29
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.62 E-value=3.4e-05 Score=76.56 Aligned_cols=128 Identities=12% Similarity=0.091 Sum_probs=91.4
Q ss_pred CCceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCChHHHHHHHHHH
Q 012551 286 RKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDIL 364 (461)
Q Consensus 286 ~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk-~YEIVIfTas~~~YA~~ILd~L 364 (461)
.++..+++|+||||....... ..++. ........|++.++|+++.+ .+.++|.|+.....++.+++.|
T Consensus 156 ~~~~~~~~D~dgtl~~~~~~~--~~~~~---------~~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l 224 (300)
T PHA02530 156 GLPKAVIFDIDGTLAKMGGRS--PYDWT---------KVKEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWL 224 (300)
T ss_pred CCCCEEEEECCCcCcCCCCCC--ccchh---------hcccCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHH
Confidence 455789999999998754211 01110 01224569999999999985 5999999999999999999999
Q ss_pred CCCCCeeeeEEEccc-------ceeeCC---ceeeeccccCC-CCCcEEEEECCchhhccCCCceeeeccc
Q 012551 365 DPDGKLISRRVYRES-------CIFSDG---TYTKDLTVLGV-DLAKVAIIDNSPQVFRLQVNNGIPIESW 424 (461)
Q Consensus 365 DP~~klf~~RLyRe~-------C~~~~g---~yiKDLs~Lgr-DLskVVIIDDsp~~~~~qp~NgIpI~s~ 424 (461)
+..+.+|...+..+. ....+. .+.+-|..++. +.+.++.|+|++........+||+.-..
T Consensus 225 ~~~~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~~~~~~~~~~~vgD~~~d~~~a~~~Gi~~i~v 295 (300)
T PHA02530 225 RQTDIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWEKIAPKYDVLLAVDDRDQVVDMWRRIGLECWQV 295 (300)
T ss_pred HHcCCchhhhhCCcchhhhcccCCCCCCcHHHHHHHHHHHhccCceEEEEEcCcHHHHHHHHHhCCeEEEe
Confidence 998767766555542 111111 23345566677 6799999999999888877888876543
No 30
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=97.43 E-value=0.00012 Score=72.23 Aligned_cols=132 Identities=12% Similarity=0.103 Sum_probs=76.6
Q ss_pred CCCceEEEEecccccccccccc-cCCCCceE---EEEecce-------eeeEEEeeCchHHHHHHHhhc-ccEEEEEcCC
Q 012551 285 GRKSVTLVLDLDETLVHSTLEY-CDDADFTF---TVFFNMK-------EHTVYVKQRPHLKTFLERVAE-MFEVVIFTAS 352 (461)
Q Consensus 285 ~~kK~tLVLDLDeTLVhSs~~~-~~~~df~~---~i~~~~~-------~~~~~V~~RPgL~eFLe~Lsk-~YEIVIfTas 352 (461)
.++++.++|||||||++++--- .....+.. ....+.. ...-.....|++.+||+++.+ .+.++|.|+.
T Consensus 60 ~~~p~aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iVTnr 139 (237)
T TIGR01672 60 GRPPIAVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFVTGR 139 (237)
T ss_pred CCCCeEEEEeCCCccccCcHHHhCCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEEeCC
Confidence 4556799999999999997410 00000000 0000000 001123444559999999985 5999999998
Q ss_pred ----ChHHHHHHHHHHCCCCCeeeeEEEcccceeeCCceeeeccccCCCCCcEEEEECCchhhccCCCceeee
Q 012551 353 ----QSIYAAQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPI 421 (461)
Q Consensus 353 ----~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~g~yiKDLs~LgrDLskVVIIDDsp~~~~~qp~NgIpI 421 (461)
...+++.+++.+...+ +|.-.+..+.....+ .-|. ..+ ....-++.|-|+..-+......||..
T Consensus 140 ~~~k~~~~a~~ll~~lGi~~-~f~~i~~~d~~~~~K--p~~~-~~l-~~~~i~i~vGDs~~DI~aAk~AGi~~ 207 (237)
T TIGR01672 140 TPGKTDTVSKTLAKNFHIPA-MNPVIFAGDKPGQYQ--YTKT-QWI-QDKNIRIHYGDSDNDITAAKEAGARG 207 (237)
T ss_pred CCCcCHHHHHHHHHHhCCch-heeEEECCCCCCCCC--CCHH-HHH-HhCCCeEEEeCCHHHHHHHHHCCCCE
Confidence 6779999999998865 665444444322111 1111 111 12333788999887665555556553
No 31
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=97.42 E-value=0.0001 Score=65.03 Aligned_cols=95 Identities=18% Similarity=0.304 Sum_probs=77.1
Q ss_pred EEEeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccceeeCC---ceeeeccccCCCCCc
Q 012551 325 VYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDG---TYTKDLTVLGVDLAK 400 (461)
Q Consensus 325 ~~V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~g---~yiKDLs~LgrDLsk 400 (461)
......|++.++|+.++ +.+.++|.|.+...++..+++.+... .+|+..+..++....+. .|.+-++.+|.++++
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~-~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~ 152 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLD-DYFDEIISSDDVGSRKPDPDAYRRALEKLGIPPEE 152 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHG-GGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGGG
T ss_pred hccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccc-cccccccccchhhhhhhHHHHHHHHHHHcCCCcce
Confidence 35889999999999999 88999999999999999999999776 48988888776554433 466667778999999
Q ss_pred EEEEECCchhhccCCCceee
Q 012551 401 VAIIDNSPQVFRLQVNNGIP 420 (461)
Q Consensus 401 VVIIDDsp~~~~~qp~NgIp 420 (461)
+++|||++.........|+.
T Consensus 153 ~~~vgD~~~d~~~A~~~G~~ 172 (176)
T PF13419_consen 153 ILFVGDSPSDVEAAKEAGIK 172 (176)
T ss_dssp EEEEESSHHHHHHHHHTTSE
T ss_pred EEEEeCCHHHHHHHHHcCCe
Confidence 99999999766544444443
No 32
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=97.33 E-value=0.00041 Score=64.49 Aligned_cols=107 Identities=18% Similarity=0.260 Sum_probs=67.4
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCChH-----------
Q 012551 288 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSI----------- 355 (461)
Q Consensus 288 K~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~----------- 355 (461)
+++++||+||||+-..... .+ ......| ...-||+.+.|++|. +.|.++|.|++...
T Consensus 13 ~k~~~~D~Dgtl~~~~~~~----~~------~~~~~~~-~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~ 81 (166)
T TIGR01664 13 SKVAAFDLDGTLITTRSGK----VF------PTSASDW-RFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFK 81 (166)
T ss_pred CcEEEEeCCCceEecCCCC----cc------cCChHHe-EEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHH
Confidence 3579999999998643110 00 0001111 224599999999997 67999999998763
Q ss_pred -HHHHHHHHHCCCCCeeeeEEEcccceeeC---CceeeeccccC--CCCCcEEEEECCc
Q 012551 356 -YAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLG--VDLAKVAIIDNSP 408 (461)
Q Consensus 356 -YA~~ILd~LDP~~klf~~RLyRe~C~~~~---g~yiKDLs~Lg--rDLskVVIIDDsp 408 (461)
++..+++.++.. +...+..+.....+ +.+..-++.+| .+++++++|.|++
T Consensus 82 ~~i~~~l~~~gl~---~~~ii~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~v~VGD~~ 137 (166)
T TIGR01664 82 NKIEAFLEKLKVP---IQVLAATHAGLYRKPMTGMWEYLQSQYNSPIKMTRSFYVGDAA 137 (166)
T ss_pred HHHHHHHHHcCCC---EEEEEecCCCCCCCCccHHHHHHHHHcCCCCCchhcEEEECCC
Confidence 567778887763 22233322221112 23334455667 7899999999986
No 33
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=97.21 E-value=0.00043 Score=64.17 Aligned_cols=107 Identities=17% Similarity=0.156 Sum_probs=73.0
Q ss_pred CCceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcc-cEEEEEcCCC-hHHHHHHHHH
Q 012551 286 RKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEM-FEVVIFTASQ-SIYAAQLLDI 363 (461)
Q Consensus 286 ~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk~-YEIVIfTas~-~~YA~~ILd~ 363 (461)
.+-..||+|+||||..... ....|++.++|++|.+. +.++|.|++. ...+..+++.
T Consensus 23 ~~v~~vv~D~Dgtl~~~~~----------------------~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~ 80 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYPDH----------------------NEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKA 80 (170)
T ss_pred CCCCEEEEecCCccccCCC----------------------CCcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHH
Confidence 3456899999999985421 23469999999999855 9999999998 6788888777
Q ss_pred HCCCCCeeeeEEEcccceeeCCceeeeccccCCCCCcEEEEECCch-hhccCCCceeee
Q 012551 364 LDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQ-VFRLQVNNGIPI 421 (461)
Q Consensus 364 LDP~~klf~~RLyRe~C~~~~g~yiKDLs~LgrDLskVVIIDDsp~-~~~~qp~NgIpI 421 (461)
++... +. .........+.+-++.+|.+.+++++|+|+.. -......+|+..
T Consensus 81 ~gl~~------~~-~~~KP~p~~~~~~l~~~~~~~~~~l~IGDs~~~Di~aA~~aGi~~ 132 (170)
T TIGR01668 81 LGIPV------LP-HAVKPPGCAFRRAHPEMGLTSEQVAVVGDRLFTDVMGGNRNGSYT 132 (170)
T ss_pred cCCEE------Ec-CCCCCChHHHHHHHHHcCCCHHHEEEECCcchHHHHHHHHcCCeE
Confidence 65421 11 11111122445556778889999999999983 444433455443
No 34
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=97.20 E-value=0.00026 Score=66.66 Aligned_cols=95 Identities=16% Similarity=0.219 Sum_probs=74.8
Q ss_pred EEeeCchHHHHHHHhhcc-cEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccceeeCC---ceeeeccccCCCCCcE
Q 012551 326 YVKQRPHLKTFLERVAEM-FEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDG---TYTKDLTVLGVDLAKV 401 (461)
Q Consensus 326 ~V~~RPgL~eFLe~Lsk~-YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~g---~yiKDLs~LgrDLskV 401 (461)
++.++||+.+||++|.+. +.++|.|++...++...++.++... +|...+..+.....+. .|.+-++.+|.+.+++
T Consensus 92 ~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~-~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~ 170 (221)
T TIGR02253 92 YLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRD-FFDAVITSEEEGVEKPHPKIFYAALKRLGVKPEEA 170 (221)
T ss_pred hCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHH-hccEEEEeccCCCCCCCHHHHHHHHHHcCCChhhE
Confidence 367899999999999865 9999999999999999999998765 8888887766544333 5667788899999999
Q ss_pred EEEECCc-hhhccCCCceeee
Q 012551 402 AIIDNSP-QVFRLQVNNGIPI 421 (461)
Q Consensus 402 VIIDDsp-~~~~~qp~NgIpI 421 (461)
|.|.|++ .-.......|+..
T Consensus 171 ~~igDs~~~di~~A~~aG~~~ 191 (221)
T TIGR02253 171 VMVGDRLDKDIKGAKNLGMKT 191 (221)
T ss_pred EEECCChHHHHHHHHHCCCEE
Confidence 9999998 3444433445443
No 35
>PRK06769 hypothetical protein; Validated
Probab=97.18 E-value=0.0004 Score=64.60 Aligned_cols=116 Identities=16% Similarity=0.188 Sum_probs=70.8
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCChHH-----HHHHHH
Q 012551 289 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQSIY-----AAQLLD 362 (461)
Q Consensus 289 ~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk-~YEIVIfTas~~~Y-----A~~ILd 362 (461)
..|+||+||||.-- .. + ...-.+...||+.++|++|.+ .|.++|.|++.... ...++.
T Consensus 5 ~~~~~d~d~~~~~~--~~-----~---------~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~ 68 (173)
T PRK06769 5 QAIFIDRDGTIGGD--TT-----I---------HYPGSFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQ 68 (173)
T ss_pred cEEEEeCCCcccCC--CC-----C---------CCHHHeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHH
Confidence 47899999999411 00 0 000124567999999999984 69999999876421 112333
Q ss_pred HHCCCCCeeeeEEE-----cccceeeC---CceeeeccccCCCCCcEEEEECCchhhccCCCceeeec
Q 012551 363 ILDPDGKLISRRVY-----RESCIFSD---GTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIE 422 (461)
Q Consensus 363 ~LDP~~klf~~RLy-----Re~C~~~~---g~yiKDLs~LgrDLskVVIIDDsp~~~~~qp~NgIpI~ 422 (461)
.+...| |...+. .+.....+ ..|.+-++.+|.+++++++|+|++.-.......|+..-
T Consensus 69 ~l~~~g--~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~i~IGD~~~Di~aA~~aGi~~i 134 (173)
T PRK06769 69 ELKGFG--FDDIYLCPHKHGDGCECRKPSTGMLLQAAEKHGLDLTQCAVIGDRWTDIVAAAKVNATTI 134 (173)
T ss_pred HHHhCC--cCEEEECcCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEcCCHHHHHHHHHCCCeEE
Confidence 333333 333332 11112222 25667778889999999999999976654444554443
No 36
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=97.18 E-value=0.0012 Score=66.84 Aligned_cols=71 Identities=20% Similarity=0.253 Sum_probs=57.8
Q ss_pred CCceEEEEecccccccccccccCCCCceEEEEecceeeeEEEee-CchHHHHHHHhhccc-EEEEEcCCChHHHHHHHHH
Q 012551 286 RKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQ-RPHLKTFLERVAEMF-EVVIFTASQSIYAAQLLDI 363 (461)
Q Consensus 286 ~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~-RPgL~eFLe~Lsk~Y-EIVIfTas~~~YA~~ILd~ 363 (461)
.++-++|+|||.|||-.... ++. =|.+.+.|..+.+.+ -+++||.|.++++..-++.
T Consensus 120 ~~phVIVfDlD~TLItd~~~---------------------v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~ 178 (297)
T PF05152_consen 120 EPPHVIVFDLDSTLITDEGD---------------------VRIRDPAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKE 178 (297)
T ss_pred CCCcEEEEECCCcccccCCc---------------------cccCChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHH
Confidence 34559999999999976421 222 388899999999764 9999999999999999999
Q ss_pred HCCCCCeeeeEEEcc
Q 012551 364 LDPDGKLISRRVYRE 378 (461)
Q Consensus 364 LDP~~klf~~RLyRe 378 (461)
++..+ +|+-.|.+.
T Consensus 179 ~~L~~-~Fd~ii~~G 192 (297)
T PF05152_consen 179 LKLEG-YFDIIICGG 192 (297)
T ss_pred hCCcc-ccEEEEeCC
Confidence 99885 898888754
No 37
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=97.17 E-value=0.00085 Score=69.97 Aligned_cols=121 Identities=17% Similarity=0.167 Sum_probs=79.4
Q ss_pred CceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCC-------------
Q 012551 287 KSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTAS------------- 352 (461)
Q Consensus 287 kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk-~YEIVIfTas------------- 352 (461)
+++.|+||-||||+........ ......+..+||+.++|++|.+ .|.++|.|+.
T Consensus 1 ~~k~l~lDrDgtl~~~~~~~y~------------~~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l 68 (354)
T PRK05446 1 MQKILFIDRDGTLIEEPPTDFQ------------VDSLDKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDF 68 (354)
T ss_pred CCcEEEEeCCCCccCCCCcccc------------ccCcccceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHH
Confidence 4679999999999986421100 1112247889999999999985 5999999995
Q ss_pred --ChHHHHHHHHHHCCCCCeeeeEEEc-----ccceeeCC---ceeeeccccCCCCCcEEEEECCchhhccCCCceeeec
Q 012551 353 --QSIYAAQLLDILDPDGKLISRRVYR-----ESCIFSDG---TYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIE 422 (461)
Q Consensus 353 --~~~YA~~ILd~LDP~~klf~~RLyR-----e~C~~~~g---~yiKDLs~LgrDLskVVIIDDsp~~~~~qp~NgIpI~ 422 (461)
...++..+++.+.. +|...++. +.|...+. .+..-+..++.+++++++|-|+..-......+|+..-
T Consensus 69 ~~~~~~i~~iL~~~gl---~fd~i~i~~~~~sd~~~~rKP~p~~l~~a~~~l~v~~~~svmIGDs~sDi~aAk~aGi~~I 145 (354)
T PRK05446 69 DPPHNLMMQIFESQGI---KFDEVLICPHFPEDNCSCRKPKTGLVEEYLAEGAIDLANSYVIGDRETDVQLAENMGIKGI 145 (354)
T ss_pred hhHHHHHHHHHHHcCC---ceeeEEEeCCcCcccCCCCCCCHHHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHCCCeEE
Confidence 24455556666544 36555554 34433322 2223334567899999999999866655555666543
No 38
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=97.16 E-value=0.00038 Score=62.90 Aligned_cols=92 Identities=20% Similarity=0.254 Sum_probs=70.6
Q ss_pred EeeCchHHHHHHHhhc-ccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccceeeC---CceeeeccccCCCCCcEE
Q 012551 327 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKVA 402 (461)
Q Consensus 327 V~~RPgL~eFLe~Lsk-~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~---g~yiKDLs~LgrDLskVV 402 (461)
+..+||+.+||+++++ .+.++|.|++...+ ..++..++..+ +|...++.+.....+ ..|.+-++.+|.+++++|
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~-~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~ 161 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRD-LFDVVIFSGDVGRGKPDPDIYLLALKKLGLKPEECL 161 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHH-HCCEEEEcCCCCCCCCCHHHHHHHHHHcCCCcceEE
Confidence 5778999999999985 69999999999999 76666677665 788888765554333 245666777899999999
Q ss_pred EEECCchhhccCCCceee
Q 012551 403 IIDNSPQVFRLQVNNGIP 420 (461)
Q Consensus 403 IIDDsp~~~~~qp~NgIp 420 (461)
+|+|++.........|+.
T Consensus 162 ~vgD~~~di~aA~~~G~~ 179 (183)
T TIGR01509 162 FVDDSPAGIEAAKAAGMH 179 (183)
T ss_pred EEcCCHHHHHHHHHcCCE
Confidence 999999766554445553
No 39
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=97.13 E-value=0.00043 Score=63.02 Aligned_cols=86 Identities=12% Similarity=0.194 Sum_probs=59.4
Q ss_pred EeeCchHHHHHHHhhc-ccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccceeeCC-----------------cee
Q 012551 327 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDG-----------------TYT 388 (461)
Q Consensus 327 V~~RPgL~eFLe~Lsk-~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~g-----------------~yi 388 (461)
+.++||+.++|+++.+ .+.++|.|++...+++.+++.++-.. +|...+..+......| ...
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 149 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKD-VFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCGCC 149 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChh-heeEEeccCceECCCCcEEEecCCCCccCcCCCCCC
Confidence 6899999999999985 59999999999999999999987654 6766654322111111 111
Q ss_pred e--eccccCCC-CCcEEEEECCchhhcc
Q 012551 389 K--DLTVLGVD-LAKVAIIDNSPQVFRL 413 (461)
Q Consensus 389 K--DLs~LgrD-LskVVIIDDsp~~~~~ 413 (461)
| -+..+... .+++|+|+|+..-...
T Consensus 150 K~~~~~~~~~~~~~~~i~iGD~~~D~~a 177 (188)
T TIGR01489 150 KGKVIHKLSEPKYQHIIYIGDGVTDVCP 177 (188)
T ss_pred HHHHHHHHHhhcCceEEEECCCcchhch
Confidence 2 22223333 7889999999876544
No 40
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=97.13 E-value=0.00042 Score=68.78 Aligned_cols=97 Identities=11% Similarity=0.184 Sum_probs=80.3
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccceeeCC---ceeeeccccCCCCCcEE
Q 012551 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDG---TYTKDLTVLGVDLAKVA 402 (461)
Q Consensus 327 V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~g---~yiKDLs~LgrDLskVV 402 (461)
+..+||+.++|++|. +.|.++|.|++.+.++..+++.++-.+ +|+..+..+.+...+. .|.+-+.++|.+++++|
T Consensus 108 ~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~-~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~~l 186 (260)
T PLN03243 108 YRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEG-FFSVVLAAEDVYRGKPDPEMFMYAAERLGFIPERCI 186 (260)
T ss_pred cccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHh-hCcEEEecccCCCCCCCHHHHHHHHHHhCCChHHeE
Confidence 567899999999998 459999999999999999999998665 8999888777654443 56777888999999999
Q ss_pred EEECCchhhccCCCceeeeccc
Q 012551 403 IIDNSPQVFRLQVNNGIPIESW 424 (461)
Q Consensus 403 IIDDsp~~~~~qp~NgIpI~s~ 424 (461)
+|+|++.-.......|+.....
T Consensus 187 ~IgDs~~Di~aA~~aG~~~i~v 208 (260)
T PLN03243 187 VFGNSNSSVEAAHDGCMKCVAV 208 (260)
T ss_pred EEcCCHHHHHHHHHcCCEEEEE
Confidence 9999998776666677665443
No 41
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=97.12 E-value=0.0001 Score=68.77 Aligned_cols=94 Identities=18% Similarity=0.164 Sum_probs=61.8
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEc-ccceee-----CC-ceeeeccccCCCCC
Q 012551 327 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYR-ESCIFS-----DG-TYTKDLTVLGVDLA 399 (461)
Q Consensus 327 V~~RPgL~eFLe~Lsk~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyR-e~C~~~-----~g-~yiKDLs~LgrDLs 399 (461)
+..+||+.+||+.+.+.+.++|.|++...+++.+++.++... +|..++.- +..... .+ ....=+..++....
T Consensus 67 ~~~~pg~~e~L~~L~~~~~~~IvS~~~~~~~~~~l~~~gl~~-~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~~~~ 145 (205)
T PRK13582 67 LDPLPGAVEFLDWLRERFQVVILSDTFYEFAGPLMRQLGWPT-LFCHSLEVDEDGMITGYDLRQPDGKRQAVKALKSLGY 145 (205)
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEeCCcHHHHHHHHHHcCCch-hhcceEEECCCCeEECccccccchHHHHHHHHHHhCC
Confidence 567899999999999669999999999999999999988654 56554432 111000 01 00111223344557
Q ss_pred cEEEEECCchhhccCCCceeee
Q 012551 400 KVAIIDNSPQVFRLQVNNGIPI 421 (461)
Q Consensus 400 kVVIIDDsp~~~~~qp~NgIpI 421 (461)
+++.|-|+..-.......|+.+
T Consensus 146 ~~v~iGDs~~D~~~~~aa~~~v 167 (205)
T PRK13582 146 RVIAAGDSYNDTTMLGEADAGI 167 (205)
T ss_pred eEEEEeCCHHHHHHHHhCCCCE
Confidence 8999999997654433344444
No 42
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=97.10 E-value=0.00055 Score=66.81 Aligned_cols=97 Identities=16% Similarity=0.249 Sum_probs=79.9
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccceeeCC---ceeeeccccCCCCCcEE
Q 012551 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDG---TYTKDLTVLGVDLAKVA 402 (461)
Q Consensus 327 V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~g---~yiKDLs~LgrDLskVV 402 (461)
+...||+.++|++|. +.+.++|-|++.+.+++.+++.++..+ +|+..+..+.+...+. .|.+-++.+|.++++++
T Consensus 107 ~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~-~Fd~iv~~~~~~~~KP~p~~~~~a~~~~~~~~~~~l 185 (248)
T PLN02770 107 LKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSD-FFQAVIIGSECEHAKPHPDPYLKALEVLKVSKDHTF 185 (248)
T ss_pred CCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChh-hCcEEEecCcCCCCCCChHHHHHHHHHhCCChhHEE
Confidence 667899999999996 569999999999999999999998775 8988888776654433 56777888999999999
Q ss_pred EEECCchhhccCCCceeeeccc
Q 012551 403 IIDNSPQVFRLQVNNGIPIESW 424 (461)
Q Consensus 403 IIDDsp~~~~~qp~NgIpI~s~ 424 (461)
+|.|++.-......+|++.-..
T Consensus 186 ~vgDs~~Di~aA~~aGi~~i~v 207 (248)
T PLN02770 186 VFEDSVSGIKAGVAAGMPVVGL 207 (248)
T ss_pred EEcCCHHHHHHHHHCCCEEEEE
Confidence 9999997776666677765533
No 43
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=97.09 E-value=0.00038 Score=65.27 Aligned_cols=94 Identities=14% Similarity=0.096 Sum_probs=75.1
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccceeeCC---ceeeecccc-CCCCCcEE
Q 012551 327 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDG---TYTKDLTVL-GVDLAKVA 402 (461)
Q Consensus 327 V~~RPgL~eFLe~Lsk~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~g---~yiKDLs~L-grDLskVV 402 (461)
+..+||+.++|+++.+.+.++|-|++...+++.+++.+.-.+ +|+..+..+.....+. .|.+-++.+ |.+++++|
T Consensus 96 ~~~~~g~~~~L~~l~~~~~~~i~Sn~~~~~~~~~l~~~~l~~-~fd~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v 174 (224)
T TIGR02254 96 HQLLPGAFELMENLQQKFRLYIVTNGVRETQYKRLRKSGLFP-FFDDIFVSEDAGIQKPDKEIFNYALERMPKFSKEEVL 174 (224)
T ss_pred CeeCccHHHHHHHHHhcCcEEEEeCCchHHHHHHHHHCCcHh-hcCEEEEcCccCCCCCCHHHHHHHHHHhcCCCchheE
Confidence 578999999999999779999999999999999999987765 7888888766554333 466777888 99999999
Q ss_pred EEECCc-hhhccCCCceeee
Q 012551 403 IIDNSP-QVFRLQVNNGIPI 421 (461)
Q Consensus 403 IIDDsp-~~~~~qp~NgIpI 421 (461)
+|+|++ .-......+|++.
T Consensus 175 ~igD~~~~di~~A~~~G~~~ 194 (224)
T TIGR02254 175 MIGDSLTADIKGGQNAGLDT 194 (224)
T ss_pred EECCCcHHHHHHHHHCCCcE
Confidence 999997 4554444455543
No 44
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=97.08 E-value=0.00053 Score=64.25 Aligned_cols=95 Identities=15% Similarity=0.135 Sum_probs=76.8
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccceeeC---CceeeeccccCCCCCcEE
Q 012551 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKVA 402 (461)
Q Consensus 327 V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~---g~yiKDLs~LgrDLskVV 402 (461)
+...||+.++|++|. +.+.++|.|++...++..+++.++-.+ +|+..+..+++...+ ..+.+-++.+|.++++++
T Consensus 74 ~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~-~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~l 152 (205)
T TIGR01454 74 VEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLP-LFDHVIGSDEVPRPKPAPDIVREALRLLDVPPEDAV 152 (205)
T ss_pred cccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChh-heeeEEecCcCCCCCCChHHHHHHHHHcCCChhheE
Confidence 677899999999997 569999999999999999999998876 788877766553322 245566677898999999
Q ss_pred EEECCchhhccCCCceeeec
Q 012551 403 IIDNSPQVFRLQVNNGIPIE 422 (461)
Q Consensus 403 IIDDsp~~~~~qp~NgIpI~ 422 (461)
+|+|++.-......+|++..
T Consensus 153 ~igD~~~Di~aA~~~Gi~~i 172 (205)
T TIGR01454 153 MVGDAVTDLASARAAGTATV 172 (205)
T ss_pred EEcCCHHHHHHHHHcCCeEE
Confidence 99999977766666777654
No 45
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=97.06 E-value=0.0014 Score=64.79 Aligned_cols=130 Identities=12% Similarity=0.125 Sum_probs=73.7
Q ss_pred CCCceEEEEecccccccccccc-cCCCCceEEE--Eecc--------eeeeEEEeeCchHHHHHHHhh-cccEEEEEcCC
Q 012551 285 GRKSVTLVLDLDETLVHSTLEY-CDDADFTFTV--FFNM--------KEHTVYVKQRPHLKTFLERVA-EMFEVVIFTAS 352 (461)
Q Consensus 285 ~~kK~tLVLDLDeTLVhSs~~~-~~~~df~~~i--~~~~--------~~~~~~V~~RPgL~eFLe~Ls-k~YEIVIfTas 352 (461)
.++++.++||+|||+++++... .....|.-.. .... .....+....||+.+||+++. +.++|++-|+.
T Consensus 60 ~~~p~av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR 139 (237)
T PRK11009 60 GRPPMAVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGR 139 (237)
T ss_pred CCCCcEEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4567799999999999965211 1111110000 0000 001234556666999999995 77999999994
Q ss_pred ----ChHHHHHHHHHHCC-CCCeeeeEEEcccceeeCCceeeeccccCCCCCcEEEEECCchhhccCCCceee
Q 012551 353 ----QSIYAAQLLDILDP-DGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIP 420 (461)
Q Consensus 353 ----~~~YA~~ILd~LDP-~~klf~~RLyRe~C~~~~g~yiKDLs~LgrDLskVVIIDDsp~~~~~qp~NgIp 420 (461)
...+++.+++.+.. ...+|...+..+.. .+.. |. ..+. ...-+|+|-|+..-+......||.
T Consensus 140 ~~~k~~~t~~~Llk~~gip~~~~f~vil~gd~~--~K~~--K~-~~l~-~~~i~I~IGDs~~Di~aA~~AGi~ 206 (237)
T PRK11009 140 TATKTETVSKTLADDFHIPADNMNPVIFAGDKP--GQYT--KT-QWLK-KKNIRIFYGDSDNDITAAREAGAR 206 (237)
T ss_pred CCcccHHHHHHHHHHcCCCcccceeEEEcCCCC--CCCC--HH-HHHH-hcCCeEEEcCCHHHHHHHHHcCCc
Confidence 46789999987765 23366544444421 1110 10 0111 223388899988666444445544
No 46
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=97.03 E-value=0.00048 Score=64.07 Aligned_cols=93 Identities=15% Similarity=0.197 Sum_probs=73.8
Q ss_pred EeeCchHHHHHHHhhcc-cEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccceeeCC---ceeeeccccCCCCCcEE
Q 012551 327 VKQRPHLKTFLERVAEM-FEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDG---TYTKDLTVLGVDLAKVA 402 (461)
Q Consensus 327 V~~RPgL~eFLe~Lsk~-YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~g---~yiKDLs~LgrDLskVV 402 (461)
+...||+.++|+++++. |.++|.|++...++..+++.+.-.. +|+..+..++....+. .|.+-++.+|.++++++
T Consensus 91 ~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~-~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~~ 169 (198)
T TIGR01428 91 LPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLDD-PFDAVLSADAVRAYKPAPQVYQLALEALGVPPDEVL 169 (198)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChh-hhheeEehhhcCCCCCCHHHHHHHHHHhCCChhhEE
Confidence 45789999999999975 9999999999999999999987653 7888887766543332 45666777899999999
Q ss_pred EEECCchhhccCCCceee
Q 012551 403 IIDNSPQVFRLQVNNGIP 420 (461)
Q Consensus 403 IIDDsp~~~~~qp~NgIp 420 (461)
+|+|++.-.......|+.
T Consensus 170 ~vgD~~~Di~~A~~~G~~ 187 (198)
T TIGR01428 170 FVASNPWDLGGAKKFGFK 187 (198)
T ss_pred EEeCCHHHHHHHHHCCCc
Confidence 999999666554455654
No 47
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=97.02 E-value=0.0004 Score=66.63 Aligned_cols=93 Identities=17% Similarity=0.155 Sum_probs=72.3
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccceeeCC---ceeeeccccCCCCCcEE
Q 012551 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDG---TYTKDLTVLGVDLAKVA 402 (461)
Q Consensus 327 V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~g---~yiKDLs~LgrDLskVV 402 (461)
...-||+.+.|+.++ +.|.+.|.|+.....++.+++.++-.. +|..++-.+.....+. ....-+..+|.+++++|
T Consensus 88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~-~F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~~l 166 (220)
T COG0546 88 SRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLAD-YFDVIVGGDDVPPPKPDPEPLLLLLEKLGLDPEEAL 166 (220)
T ss_pred CccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCcc-ccceEEcCCCCCCCCcCHHHHHHHHHHhCCChhheE
Confidence 467899999999999 559999999999999999999998876 7877776333333332 33455567788877999
Q ss_pred EEECCchhhccCCCceee
Q 012551 403 IIDNSPQVFRLQVNNGIP 420 (461)
Q Consensus 403 IIDDsp~~~~~qp~NgIp 420 (461)
.|=|+..-.......|++
T Consensus 167 ~VGDs~~Di~aA~~Ag~~ 184 (220)
T COG0546 167 MVGDSLNDILAAKAAGVP 184 (220)
T ss_pred EECCCHHHHHHHHHcCCC
Confidence 999999877665556655
No 48
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=97.02 E-value=0.00055 Score=63.90 Aligned_cols=96 Identities=16% Similarity=0.125 Sum_probs=75.4
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccceeeCC---ceeeeccccCCCCCcEE
Q 012551 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDG---TYTKDLTVLGVDLAKVA 402 (461)
Q Consensus 327 V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~g---~yiKDLs~LgrDLskVV 402 (461)
+..+||+.++|+.+. +.+.++|.|++.+.+++.+++.++-.+ +|...+..+.....+. .|.+-++.+|.++++++
T Consensus 84 ~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~ 162 (213)
T TIGR01449 84 TSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAK-YFSVLIGGDSLAQRKPHPDPLLLAAERLGVAPQQMV 162 (213)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHh-hCcEEEecCCCCCCCCChHHHHHHHHHcCCChhHeE
Confidence 578999999999998 559999999999999999999988765 7877666554332222 45667788899999999
Q ss_pred EEECCchhhccCCCceeeecc
Q 012551 403 IIDNSPQVFRLQVNNGIPIES 423 (461)
Q Consensus 403 IIDDsp~~~~~qp~NgIpI~s 423 (461)
+|+|++.-.......|++.-.
T Consensus 163 ~igDs~~d~~aa~~aG~~~i~ 183 (213)
T TIGR01449 163 YVGDSRVDIQAARAAGCPSVL 183 (213)
T ss_pred EeCCCHHHHHHHHHCCCeEEE
Confidence 999999777655556666543
No 49
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=96.98 E-value=0.00037 Score=68.27 Aligned_cols=87 Identities=22% Similarity=0.321 Sum_probs=68.9
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEccc---------ceeeCCceeeeccccCCC
Q 012551 327 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRES---------CIFSDGTYTKDLTVLGVD 397 (461)
Q Consensus 327 V~~RPgL~eFLe~Lsk~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~---------C~~~~g~yiKDLs~LgrD 397 (461)
++.-|-|+++|-.|.+.+ .++||.+.+..|.++|++|.-.. .|...++.+- |......|.|-.+..|.+
T Consensus 99 LkPD~~LRnlLL~l~~r~-k~~FTNa~k~HA~r~Lk~LGieD-cFegii~~e~~np~~~~~vcKP~~~afE~a~k~agi~ 176 (244)
T KOG3109|consen 99 LKPDPVLRNLLLSLKKRR-KWIFTNAYKVHAIRILKKLGIED-CFEGIICFETLNPIEKTVVCKPSEEAFEKAMKVAGID 176 (244)
T ss_pred cCCCHHHHHHHHhCcccc-EEEecCCcHHHHHHHHHHhChHH-hccceeEeeccCCCCCceeecCCHHHHHHHHHHhCCC
Confidence 677788999999999887 89999999999999999999886 7888887442 222233455666667876
Q ss_pred -CCcEEEEECCchhhccCC
Q 012551 398 -LAKVAIIDNSPQVFRLQV 415 (461)
Q Consensus 398 -LskVVIIDDsp~~~~~qp 415 (461)
++|++++||+........
T Consensus 177 ~p~~t~FfDDS~~NI~~ak 195 (244)
T KOG3109|consen 177 SPRNTYFFDDSERNIQTAK 195 (244)
T ss_pred CcCceEEEcCchhhHHHHH
Confidence 999999999998765433
No 50
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=96.97 E-value=0.00039 Score=64.06 Aligned_cols=91 Identities=23% Similarity=0.291 Sum_probs=72.0
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEccccee-------eCCceeeeccccCCCCC
Q 012551 327 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIF-------SDGTYTKDLTVLGVDLA 399 (461)
Q Consensus 327 V~~RPgL~eFLe~Lsk~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~-------~~g~yiKDLs~LgrDLs 399 (461)
+...||+.++|++|. +.++|.|++.+.++..+++.++..+ +|+..+..+.... ....|.+-++.+|.+++
T Consensus 83 ~~~~~g~~~~L~~L~--~~~~i~Tn~~~~~~~~~l~~~gl~~-~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~ 159 (184)
T TIGR01993 83 LKPDPELRNLLLRLP--GRKIIFTNGDRAHARRALNRLGIED-CFDGIFCFDTANPDYLLPKPSPQAYEKALREAGVDPE 159 (184)
T ss_pred CCCCHHHHHHHHhCC--CCEEEEeCCCHHHHHHHHHHcCcHh-hhCeEEEeecccCccCCCCCCHHHHHHHHHHhCCCcc
Confidence 456799999999998 6899999999999999999997654 8888877655432 12256667778899999
Q ss_pred cEEEEECCchhhccCCCceee
Q 012551 400 KVAIIDNSPQVFRLQVNNGIP 420 (461)
Q Consensus 400 kVVIIDDsp~~~~~qp~NgIp 420 (461)
++++|+|++.........|+.
T Consensus 160 ~~l~vgD~~~di~aA~~~G~~ 180 (184)
T TIGR01993 160 RAIFFDDSARNIAAAKALGMK 180 (184)
T ss_pred ceEEEeCCHHHHHHHHHcCCE
Confidence 999999999766555556654
No 51
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=96.83 E-value=0.00068 Score=65.01 Aligned_cols=49 Identities=20% Similarity=0.314 Sum_probs=43.1
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEE
Q 012551 327 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVY 376 (461)
Q Consensus 327 V~~RPgL~eFLe~Lsk~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLy 376 (461)
+.++||+.+||+++.+.+.++|-|++...+++++++.++-.. +|..++-
T Consensus 67 i~l~pga~ell~~lk~~~~~~IVS~~~~~~~~~il~~lgi~~-~~an~l~ 115 (203)
T TIGR02137 67 LKPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMRQLGFPT-LLCHKLE 115 (203)
T ss_pred CCCCccHHHHHHHHHhCCeEEEEeCChHHHHHHHHHHcCCch-hhceeeE
Confidence 578999999999999878999999999999999999998764 6665554
No 52
>PRK09449 dUMP phosphatase; Provisional
Probab=96.82 E-value=0.00094 Score=63.19 Aligned_cols=92 Identities=15% Similarity=0.149 Sum_probs=72.1
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccceeeCC---ceeeeccccCC-CCCcEE
Q 012551 327 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDG---TYTKDLTVLGV-DLAKVA 402 (461)
Q Consensus 327 V~~RPgL~eFLe~Lsk~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~g---~yiKDLs~Lgr-DLskVV 402 (461)
+...||+.++|++|.+.|.++|.|++.+.+++.+++.+...+ +|+..+..+++...+. .|.+-++.+|. +.++++
T Consensus 94 ~~~~~g~~~~L~~L~~~~~~~i~Tn~~~~~~~~~l~~~~l~~-~fd~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~ 172 (224)
T PRK09449 94 CTPLPGAVELLNALRGKVKMGIITNGFTELQQVRLERTGLRD-YFDLLVISEQVGVAKPDVAIFDYALEQMGNPDRSRVL 172 (224)
T ss_pred CccCccHHHHHHHHHhCCeEEEEeCCcHHHHHHHHHhCChHH-HcCEEEEECccCCCCCCHHHHHHHHHHcCCCCcccEE
Confidence 567899999999999889999999999999999999987765 7888888776654433 46677788885 457899
Q ss_pred EEECCch-hhccCCCcee
Q 012551 403 IIDNSPQ-VFRLQVNNGI 419 (461)
Q Consensus 403 IIDDsp~-~~~~qp~NgI 419 (461)
+|+|++. -.......|+
T Consensus 173 ~vgD~~~~Di~~A~~aG~ 190 (224)
T PRK09449 173 MVGDNLHSDILGGINAGI 190 (224)
T ss_pred EEcCCcHHHHHHHHHCCC
Confidence 9999973 4433334444
No 53
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=96.80 E-value=0.00089 Score=62.77 Aligned_cols=100 Identities=13% Similarity=0.140 Sum_probs=75.9
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccceeeCC---ceeeeccccCCCCCcEE
Q 012551 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDG---TYTKDLTVLGVDLAKVA 402 (461)
Q Consensus 327 V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~g---~yiKDLs~LgrDLskVV 402 (461)
...+||+.++|+.+. +.|.++|.|++....+..++.....-..+|+..+..+++...+. .|.+-++.+|.++++++
T Consensus 83 ~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l 162 (199)
T PRK09456 83 VALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQAEGFSAADAV 162 (199)
T ss_pred hccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHHHcCCChhHeE
Confidence 457999999999998 56999999999988776655442222347888887766655443 46677788999999999
Q ss_pred EEECCchhhccCCCceeeeccccC
Q 012551 403 IIDNSPQVFRLQVNNGIPIESWFD 426 (461)
Q Consensus 403 IIDDsp~~~~~qp~NgIpI~s~~g 426 (461)
+|||++.........|+...-+.+
T Consensus 163 ~vgD~~~di~aA~~aG~~~i~~~~ 186 (199)
T PRK09456 163 FFDDNADNIEAANALGITSILVTD 186 (199)
T ss_pred EeCCCHHHHHHHHHcCCEEEEecC
Confidence 999999877666677887655544
No 54
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=96.78 E-value=0.0035 Score=56.44 Aligned_cols=84 Identities=24% Similarity=0.247 Sum_probs=58.2
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHh-hcccEEEEEcCCChHHHH---------
Q 012551 289 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERV-AEMFEVVIFTASQSIYAA--------- 358 (461)
Q Consensus 289 ~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~L-sk~YEIVIfTas~~~YA~--------- 358 (461)
+.+++||||||+..... .|. .....|.+.+.|+++ .+.++|+++|+-......
T Consensus 2 K~i~~DiDGTL~~~~~~-----~y~------------~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~ 64 (126)
T TIGR01689 2 KRLVMDLDNTITLTENG-----DYA------------NVAPILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIH 64 (126)
T ss_pred CEEEEeCCCCcccCCCC-----ccc------------ccccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchh
Confidence 37899999999754210 000 134678899999998 477999999999888876
Q ss_pred ---HHHHHHCCCCCeeeeEEEcc-cceeeCCceeee
Q 012551 359 ---QLLDILDPDGKLISRRVYRE-SCIFSDGTYTKD 390 (461)
Q Consensus 359 ---~ILd~LDP~~klf~~RLyRe-~C~~~~g~yiKD 390 (461)
.+++.|+.++-.+...+.|. .|. ..|.|+.|
T Consensus 65 ~~~~t~~wL~k~~ipYd~l~~~kp~~~-~~~~~~dD 99 (126)
T TIGR01689 65 TLPIIILWLNQHNVPYDEIYVGKPWCG-HDGFYVDD 99 (126)
T ss_pred hHHHHHHHHHHcCCCCceEEeCCCcCC-CCCceecc
Confidence 77888888876666666653 342 23444444
No 55
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=96.77 E-value=0.0013 Score=62.59 Aligned_cols=99 Identities=14% Similarity=0.081 Sum_probs=79.5
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccceeeCC---ceeeeccccCCCCCcEE
Q 012551 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDG---TYTKDLTVLGVDLAKVA 402 (461)
Q Consensus 327 V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~g---~yiKDLs~LgrDLskVV 402 (461)
....||+.++|+++. +.+.++|.|++....++.+++.+.-.+ +|+..+.++.....+. .|.+-++.+|.++++++
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~ 169 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRD-YFDALASAEKLPYSKPHPEVYLNCAAKLGVDPLTCV 169 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchh-cccEEEEcccCCCCCCCHHHHHHHHHHcCCCHHHeE
Confidence 567899999999998 569999999999999999999988765 7888777765433332 45666778899999999
Q ss_pred EEECCchhhccCCCceeeeccccC
Q 012551 403 IIDNSPQVFRLQVNNGIPIESWFD 426 (461)
Q Consensus 403 IIDDsp~~~~~qp~NgIpI~s~~g 426 (461)
.|+|++.-.......|++.--+..
T Consensus 170 ~igDs~~Di~aA~~aG~~~i~v~~ 193 (222)
T PRK10826 170 ALEDSFNGMIAAKAARMRSIVVPA 193 (222)
T ss_pred EEcCChhhHHHHHHcCCEEEEecC
Confidence 999999877776677777655443
No 56
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=96.72 E-value=0.0018 Score=59.14 Aligned_cols=111 Identities=19% Similarity=0.178 Sum_probs=73.0
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHHHCCC
Q 012551 289 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPD 367 (461)
Q Consensus 289 ~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~LDP~ 367 (461)
+.++||+||||+.-.... ..+ ....-++.++|+. -|++|. +.+.++|.|+..+..+..+++.+...
T Consensus 2 ~~~~~D~Dgtl~~~~~~~----------~~~-~~~~~~~~~~~~~--~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~ 68 (154)
T TIGR01670 2 RLLILDVDGVLTDGKIYY----------TNN-GEEIKAFNVRDGY--GIRCALKSGIEVAIITGRKAKLVEDRCKTLGIT 68 (154)
T ss_pred eEEEEeCceeEEcCeEEE----------CCC-CcEEEEEechhHH--HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCC
Confidence 478999999999532100 001 1112234677776 688887 46999999999999999999998765
Q ss_pred CCeeeeEEEcccceeeCC-ceeeeccccCCCCCcEEEEECCchhhccCCCceee
Q 012551 368 GKLISRRVYRESCIFSDG-TYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIP 420 (461)
Q Consensus 368 ~klf~~RLyRe~C~~~~g-~yiKDLs~LgrDLskVVIIDDsp~~~~~qp~NgIp 420 (461)
. +|... ..+. .+.+-+..+|.++++++.|-|+..-...-...|+.
T Consensus 69 ~-~~~~~-------~~k~~~~~~~~~~~~~~~~~~~~vGDs~~D~~~~~~ag~~ 114 (154)
T TIGR01670 69 H-LYQGQ-------SNKLIAFSDILEKLALAPENVAYIGDDLIDWPVMEKVGLS 114 (154)
T ss_pred E-EEecc-------cchHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCCe
Confidence 3 45321 1122 22333456788899999999998765444444444
No 57
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=96.70 E-value=0.00093 Score=61.29 Aligned_cols=94 Identities=15% Similarity=0.165 Sum_probs=75.4
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccceeeCC---ceeeeccccCCCCCcEEE
Q 012551 327 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDG---TYTKDLTVLGVDLAKVAI 403 (461)
Q Consensus 327 V~~RPgL~eFLe~Lsk~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~g---~yiKDLs~LgrDLskVVI 403 (461)
+..-|++ +.|+++.+.+.++|-|++.+.+++.+++.+.-.+ +|+..+..++....+. .|.+-++++|.+++++|+
T Consensus 87 ~~~~~~~-e~L~~L~~~~~l~I~T~~~~~~~~~~l~~~~l~~-~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l~ 164 (188)
T PRK10725 87 VEPLPLI-EVVKAWHGRRPMAVGTGSESAIAEALLAHLGLRR-YFDAVVAADDVQHHKPAPDTFLRCAQLMGVQPTQCVV 164 (188)
T ss_pred CCCccHH-HHHHHHHhCCCEEEEcCCchHHHHHHHHhCCcHh-HceEEEehhhccCCCCChHHHHHHHHHcCCCHHHeEE
Confidence 3455764 8899998779999999999999999999998765 8998888877654443 456777788999999999
Q ss_pred EECCchhhccCCCceeeec
Q 012551 404 IDNSPQVFRLQVNNGIPIE 422 (461)
Q Consensus 404 IDDsp~~~~~qp~NgIpI~ 422 (461)
|+|++.-+......|++.-
T Consensus 165 igDs~~di~aA~~aG~~~i 183 (188)
T PRK10725 165 FEDADFGIQAARAAGMDAV 183 (188)
T ss_pred EeccHhhHHHHHHCCCEEE
Confidence 9999987776666776643
No 58
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=96.66 E-value=0.00096 Score=60.80 Aligned_cols=92 Identities=16% Similarity=0.194 Sum_probs=71.2
Q ss_pred EeeCchHHHHHHHhhc-ccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccceeeCC---ceeeeccccCCCCCcEE
Q 012551 327 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDG---TYTKDLTVLGVDLAKVA 402 (461)
Q Consensus 327 V~~RPgL~eFLe~Lsk-~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~g---~yiKDLs~LgrDLskVV 402 (461)
+...||+.++|++|.+ .+.++|-|++ .+++.+++.++-.+ +|...+..+.....+. .|.+-++.+|..++++|
T Consensus 87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~-~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v 163 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLTD-YFDAIVDADEVKEGKPHPETFLLAAELLGVSPNECV 163 (185)
T ss_pred CCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChHH-HCCEeeehhhCCCCCCChHHHHHHHHHcCCCHHHeE
Confidence 5789999999999985 5999999988 78999999887664 7888777655443332 34566677888999999
Q ss_pred EEECCchhhccCCCceeee
Q 012551 403 IIDNSPQVFRLQVNNGIPI 421 (461)
Q Consensus 403 IIDDsp~~~~~qp~NgIpI 421 (461)
+|+|++.-......+|++.
T Consensus 164 ~IgD~~~di~aA~~~G~~~ 182 (185)
T TIGR02009 164 VFEDALAGVQAARAAGMFA 182 (185)
T ss_pred EEeCcHhhHHHHHHCCCeE
Confidence 9999997776655666653
No 59
>PLN02954 phosphoserine phosphatase
Probab=96.66 E-value=0.00065 Score=64.31 Aligned_cols=92 Identities=9% Similarity=0.123 Sum_probs=60.3
Q ss_pred EeeCchHHHHHHHhhc-ccEEEEEcCCChHHHHHHHHHHCCCC-CeeeeEEEccc-------------cee-eCCcee-e
Q 012551 327 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDG-KLISRRVYRES-------------CIF-SDGTYT-K 389 (461)
Q Consensus 327 V~~RPgL~eFLe~Lsk-~YEIVIfTas~~~YA~~ILd~LDP~~-klf~~RLyRe~-------------C~~-~~g~yi-K 389 (461)
..++||+.++|+++.+ .+.++|-|++.+.+++.+++.++-.. .+|..++.-+. |.. .+...+ +
T Consensus 83 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i~~ 162 (224)
T PLN02954 83 PRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEAVQH 162 (224)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHHHHH
Confidence 4578999999999974 58999999999999999999987652 36654443111 100 011111 1
Q ss_pred eccccCCCCCcEEEEECCchhhccCCCceee
Q 012551 390 DLTVLGVDLAKVAIIDNSPQVFRLQVNNGIP 420 (461)
Q Consensus 390 DLs~LgrDLskVVIIDDsp~~~~~qp~NgIp 420 (461)
-+..+| .+++|.|-|++.-......+|+.
T Consensus 163 ~~~~~~--~~~~i~iGDs~~Di~aa~~~~~~ 191 (224)
T PLN02954 163 IKKKHG--YKTMVMIGDGATDLEARKPGGAD 191 (224)
T ss_pred HHHHcC--CCceEEEeCCHHHHHhhhcCCCC
Confidence 112233 46899999999877665444444
No 60
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=96.66 E-value=0.0017 Score=68.45 Aligned_cols=97 Identities=10% Similarity=0.094 Sum_probs=79.7
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccceeeCC---ceeeeccccCCCCCcEE
Q 012551 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDG---TYTKDLTVLGVDLAKVA 402 (461)
Q Consensus 327 V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~g---~yiKDLs~LgrDLskVV 402 (461)
+...||+.+||++|. +.+.+.|-|++.+.+++.+++.++-.+ ||+..+..+++...+. .|.+-+..+|.+++++|
T Consensus 215 ~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~-yFd~Iv~sddv~~~KP~Peifl~A~~~lgl~Peecl 293 (381)
T PLN02575 215 YRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRG-FFSVIVAAEDVYRGKPDPEMFIYAAQLLNFIPERCI 293 (381)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHH-HceEEEecCcCCCCCCCHHHHHHHHHHcCCCcccEE
Confidence 457899999999997 559999999999999999999998765 8999888887654443 56777888999999999
Q ss_pred EEECCchhhccCCCceeeeccc
Q 012551 403 IIDNSPQVFRLQVNNGIPIESW 424 (461)
Q Consensus 403 IIDDsp~~~~~qp~NgIpI~s~ 424 (461)
+|+|++.-.......|+..-..
T Consensus 294 ~IGDS~~DIeAAk~AGm~~IgV 315 (381)
T PLN02575 294 VFGNSNQTVEAAHDARMKCVAV 315 (381)
T ss_pred EEcCCHHHHHHHHHcCCEEEEE
Confidence 9999998776655566554443
No 61
>PRK11587 putative phosphatase; Provisional
Probab=96.56 E-value=0.0035 Score=59.60 Aligned_cols=96 Identities=13% Similarity=0.086 Sum_probs=73.5
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccceeeCC---ceeeeccccCCCCCcEE
Q 012551 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDG---TYTKDLTVLGVDLAKVA 402 (461)
Q Consensus 327 V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~g---~yiKDLs~LgrDLskVV 402 (461)
+...||+.++|++|. +.+.++|-|++...++..+++...- . +|...+..++....+. .|.+-+..+|..++++|
T Consensus 82 ~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l-~-~~~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~~~l 159 (218)
T PRK11587 82 ITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGL-P-APEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQECV 159 (218)
T ss_pred ceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCC-C-CccEEEEHHHhcCCCCCcHHHHHHHHHcCCCcccEE
Confidence 567999999999997 5699999999999988888877665 2 4555565555433332 56777788999999999
Q ss_pred EEECCchhhccCCCceeeeccc
Q 012551 403 IIDNSPQVFRLQVNNGIPIESW 424 (461)
Q Consensus 403 IIDDsp~~~~~qp~NgIpI~s~ 424 (461)
+|+|++.-.......|+..-.+
T Consensus 160 ~igDs~~di~aA~~aG~~~i~v 181 (218)
T PRK11587 160 VVEDAPAGVLSGLAAGCHVIAV 181 (218)
T ss_pred EEecchhhhHHHHHCCCEEEEE
Confidence 9999997776666667664444
No 62
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=96.54 E-value=0.0023 Score=62.09 Aligned_cols=98 Identities=12% Similarity=0.024 Sum_probs=76.4
Q ss_pred EeeCchHHHHHHHhhc-ccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccceeeCC---ceeeeccccCC-CCCcE
Q 012551 327 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDG---TYTKDLTVLGV-DLAKV 401 (461)
Q Consensus 327 V~~RPgL~eFLe~Lsk-~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~g---~yiKDLs~Lgr-DLskV 401 (461)
+...||+.++|++|.+ .+.+.|-|++.+.+++.+++.++..+.+|+..+..+.....+. .|.+-++.+|. +++++
T Consensus 98 ~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~~~~~ 177 (253)
T TIGR01422 98 SSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQGYRPDYNVTTDDVPAGRPAPWMALKNAIELGVYDVAAC 177 (253)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcCCCCceEEccccCCCCCCCHHHHHHHHHHcCCCCchhe
Confidence 5678999999999985 5999999999999999999999877632466666665433332 56677788887 48999
Q ss_pred EEEECCchhhccCCCceeeeccc
Q 012551 402 AIIDNSPQVFRLQVNNGIPIESW 424 (461)
Q Consensus 402 VIIDDsp~~~~~qp~NgIpI~s~ 424 (461)
|+|.|++.-.......|+..-..
T Consensus 178 l~IGDs~~Di~aA~~aGi~~i~v 200 (253)
T TIGR01422 178 VKVGDTVPDIEEGRNAGMWTVGL 200 (253)
T ss_pred EEECCcHHHHHHHHHCCCeEEEE
Confidence 99999998776666677665544
No 63
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=96.42 E-value=0.0031 Score=59.33 Aligned_cols=93 Identities=17% Similarity=0.211 Sum_probs=70.7
Q ss_pred EeeCchHHHHHHHhhc-ccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccceeeCC---ceeeeccccCCCCCcEE
Q 012551 327 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDG---TYTKDLTVLGVDLAKVA 402 (461)
Q Consensus 327 V~~RPgL~eFLe~Lsk-~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~g---~yiKDLs~LgrDLskVV 402 (461)
...+||+.+||+.+.+ .+.++|.|++...++..+++.++-.+ +|...+..+.....+. .+.+-++.++.+.++++
T Consensus 92 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i 170 (226)
T PRK13222 92 SRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIAD-YFSVVIGGDSLPNKKPDPAPLLLACEKLGLDPEEML 170 (226)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCcc-CccEEEcCCCCCCCCcChHHHHHHHHHcCCChhheE
Confidence 6689999999999985 69999999999999999999998764 6766555444322221 34556677888999999
Q ss_pred EEECCchhhccCCCceee
Q 012551 403 IIDNSPQVFRLQVNNGIP 420 (461)
Q Consensus 403 IIDDsp~~~~~qp~NgIp 420 (461)
+|+|++.-.......|++
T Consensus 171 ~igD~~~Di~~a~~~g~~ 188 (226)
T PRK13222 171 FVGDSRNDIQAARAAGCP 188 (226)
T ss_pred EECCCHHHHHHHHHCCCc
Confidence 999998766554445543
No 64
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=96.41 E-value=0.0066 Score=66.47 Aligned_cols=109 Identities=12% Similarity=0.163 Sum_probs=71.4
Q ss_pred CCceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCCh----------
Q 012551 286 RKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQS---------- 354 (461)
Q Consensus 286 ~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Ls-k~YEIVIfTas~~---------- 354 (461)
.+.+++.||+||||+...... .| ...... +..+-||+.+.|+.|. +.|.|+|+|+...
T Consensus 166 ~~~Kia~fD~DGTLi~t~sg~----~~------~~~~~d-~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~ 234 (526)
T TIGR01663 166 GQEKIAGFDLDGTIIKTKSGK----VF------PKGPDD-WQIIFPEIPEKLKELEADGFKICIFTNQGGIARGKINADD 234 (526)
T ss_pred ccCcEEEEECCCCccccCCCc----cC------CCCHHH-eeecccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHH
Confidence 345799999999999653110 00 001111 2224699999999998 4699999999776
Q ss_pred --HHHHHHHHHHCCCCCeeeeEEEcccceeeC---Cceeeecccc----CCCCCcEEEEECCc
Q 012551 355 --IYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVL----GVDLAKVAIIDNSP 408 (461)
Q Consensus 355 --~YA~~ILd~LDP~~klf~~RLyRe~C~~~~---g~yiKDLs~L----grDLskVVIIDDsp 408 (461)
..+..+++.++. .|...+..+.|.+.+ |.+..-+..+ +.+++++++|-|+.
T Consensus 235 ~~~ki~~iL~~lgi---pfdviia~~~~~~RKP~pGm~~~a~~~~~~~~~Id~~~S~~VGDaa 294 (526)
T TIGR01663 235 FKAKIEAIVAKLGV---PFQVFIAIGAGFYRKPLTGMWDHLKEEANDGTEIQEDDCFFVGDAA 294 (526)
T ss_pred HHHHHHHHHHHcCC---ceEEEEeCCCCCCCCCCHHHHHHHHHhcCcccCCCHHHeEEeCCcc
Confidence 467888888865 366444455555443 2332222333 57899999999997
No 65
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=96.41 E-value=0.0032 Score=60.60 Aligned_cols=95 Identities=12% Similarity=0.036 Sum_probs=74.0
Q ss_pred EEeeCchHHHHHHHhhc-ccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccceeeCC---ceeeeccccCCCCCcE
Q 012551 326 YVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDG---TYTKDLTVLGVDLAKV 401 (461)
Q Consensus 326 ~V~~RPgL~eFLe~Lsk-~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~g---~yiKDLs~LgrDLskV 401 (461)
.+...||+.++|++|.+ .+.+.|-|++...++..+++.++-.+ +|...+..+.+...+. .+.+-++.+|.+++++
T Consensus 93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~-~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~ 171 (229)
T PRK13226 93 QSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQ-RCAVLIGGDTLAERKPHPLPLLVAAERIGVAPTDC 171 (229)
T ss_pred cCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchh-cccEEEecCcCCCCCCCHHHHHHHHHHhCCChhhE
Confidence 36789999999999985 58999999999999999999987665 6776666555433332 4567777889999999
Q ss_pred EEEECCchhhccCCCceeee
Q 012551 402 AIIDNSPQVFRLQVNNGIPI 421 (461)
Q Consensus 402 VIIDDsp~~~~~qp~NgIpI 421 (461)
++|+|++.-.......|+..
T Consensus 172 l~IGDs~~Di~aA~~aG~~~ 191 (229)
T PRK13226 172 VYVGDDERDILAARAAGMPS 191 (229)
T ss_pred EEeCCCHHHHHHHHHCCCcE
Confidence 99999997665555556554
No 66
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.19 E-value=0.0061 Score=57.30 Aligned_cols=84 Identities=14% Similarity=0.122 Sum_probs=72.9
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccceeeCC---ceeeeccccCCCCCcEEE
Q 012551 327 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDG---TYTKDLTVLGVDLAKVAI 403 (461)
Q Consensus 327 V~~RPgL~eFLe~Lsk~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~g---~yiKDLs~LgrDLskVVI 403 (461)
+...|++.++|+.+.+.|.++|.|.+...++...+..+. -..+|+..++.+.....+. .|..-++.+|.+++++++
T Consensus 98 ~~~~~~~~~~L~~l~~~~~l~ilTNg~~~~~~~~l~~~g-l~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~l~ 176 (229)
T COG1011 98 LPDYPEALEALKELGKKYKLGILTNGARPHQERKLRQLG-LLDYFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEALF 176 (229)
T ss_pred CccChhHHHHHHHHHhhccEEEEeCCChHHHHHHHHHcC-ChhhhheEEEecccccCCCCcHHHHHHHHHcCCCcceEEE
Confidence 677899999999999779999999999999999999998 4458999999887775543 566778889999999999
Q ss_pred EECCchhh
Q 012551 404 IDNSPQVF 411 (461)
Q Consensus 404 IDDsp~~~ 411 (461)
|||+...-
T Consensus 177 VgD~~~~d 184 (229)
T COG1011 177 VGDSLEND 184 (229)
T ss_pred ECCChhhh
Confidence 99999765
No 67
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=96.17 E-value=0.0079 Score=55.38 Aligned_cols=94 Identities=14% Similarity=0.152 Sum_probs=66.0
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccceeeCC-ce------------eeecc
Q 012551 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDG-TY------------TKDLT 392 (461)
Q Consensus 327 V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~g-~y------------iKDLs 392 (461)
+..+||+.++|+++. +.+.++|.|++...+++.+++.+.... +|...+..+......+ .+ .+-+.
T Consensus 79 ~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~-~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~~ 157 (201)
T TIGR01491 79 ISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDY-VYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLKR 157 (201)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCe-EEEEEEEEcCCCeEecceeeEEccccHHHHHHHHHH
Confidence 678999999999998 569999999999999999999998654 6665554322111111 11 11133
Q ss_pred ccCCCCCcEEEEECCchhhccCCCceeee
Q 012551 393 VLGVDLAKVAIIDNSPQVFRLQVNNGIPI 421 (461)
Q Consensus 393 ~LgrDLskVVIIDDsp~~~~~qp~NgIpI 421 (461)
.+|.+++++++|.|+..-...-...|+++
T Consensus 158 ~~~~~~~~~i~iGDs~~D~~~a~~ag~~~ 186 (201)
T TIGR01491 158 ELNPSLTETVAVGDSKNDLPMFEVADISI 186 (201)
T ss_pred HhCCCHHHEEEEcCCHhHHHHHHhcCCeE
Confidence 45778899999999986655444455544
No 68
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=96.10 E-value=0.0016 Score=66.89 Aligned_cols=94 Identities=15% Similarity=0.185 Sum_probs=64.2
Q ss_pred EeeCchHHHHHHHhhc-ccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEccccee------------eCCceeee-cc
Q 012551 327 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIF------------SDGTYTKD-LT 392 (461)
Q Consensus 327 V~~RPgL~eFLe~Lsk-~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~------------~~g~yiKD-Ls 392 (461)
+.++||+.++|+++.+ .+.++|.|++...+++.+++.++-.. .+...+-.....+ .+...++. ++
T Consensus 180 l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~-~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la~ 258 (322)
T PRK11133 180 LPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDA-AVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLAQ 258 (322)
T ss_pred CCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCe-EEEeEEEEECCEEEeEecCccCCcccHHHHHHHHHH
Confidence 6789999999999985 49999999999999999999987654 3333332111000 11111222 24
Q ss_pred ccCCCCCcEEEEECCchhhccCCCceeee
Q 012551 393 VLGVDLAKVAIIDNSPQVFRLQVNNGIPI 421 (461)
Q Consensus 393 ~LgrDLskVVIIDDsp~~~~~qp~NgIpI 421 (461)
.+|.+++++|.|-|+..-...-..-|+.|
T Consensus 259 ~lgi~~~qtIaVGDg~NDl~m~~~AGlgi 287 (322)
T PRK11133 259 EYEIPLAQTVAIGDGANDLPMIKAAGLGI 287 (322)
T ss_pred HcCCChhhEEEEECCHHHHHHHHHCCCeE
Confidence 56889999999999997665544445544
No 69
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=96.10 E-value=0.0052 Score=61.13 Aligned_cols=93 Identities=13% Similarity=0.137 Sum_probs=72.0
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccceeeCC---ceeeeccccCCCCCcEE
Q 012551 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDG---TYTKDLTVLGVDLAKVA 402 (461)
Q Consensus 327 V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~g---~yiKDLs~LgrDLskVV 402 (461)
+..+||+.++|+++. +.+.++|.|++...++..+++.++-.+ +|...+..+.+...+. .+.+-++.+|.+++++|
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~-~f~~i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~~l 178 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGR-YFRWIIGGDTLPQKKPDPAALLFVMKMAGVPPSQSL 178 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHh-hCeEEEecCCCCCCCCCcHHHHHHHHHhCCChhHEE
Confidence 457899999999997 569999999999999999999987654 7877666554432222 34455667899999999
Q ss_pred EEECCchhhccCCCceee
Q 012551 403 IIDNSPQVFRLQVNNGIP 420 (461)
Q Consensus 403 IIDDsp~~~~~qp~NgIp 420 (461)
+|+|++.-......+|+.
T Consensus 179 ~IGD~~~Di~aA~~aGi~ 196 (272)
T PRK13223 179 FVGDSRSDVLAAKAAGVQ 196 (272)
T ss_pred EECCCHHHHHHHHHCCCe
Confidence 999999776655556664
No 70
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=96.05 E-value=0.0055 Score=57.84 Aligned_cols=95 Identities=16% Similarity=0.169 Sum_probs=73.6
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHHHCCCC-CeeeeEEEcccceeeC---CceeeeccccCCC-CCc
Q 012551 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDG-KLISRRVYRESCIFSD---GTYTKDLTVLGVD-LAK 400 (461)
Q Consensus 327 V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~LDP~~-klf~~RLyRe~C~~~~---g~yiKDLs~LgrD-Lsk 400 (461)
..+.||+.++|++|. +.+.++|-|++...++..+++.++... .+|...+..+.-...+ ..|.+-++++|.. +++
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~ 165 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTGVQDVQS 165 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHHcCCCChhH
Confidence 468999999999997 679999999999999999999998652 5888777665432222 2455666778876 799
Q ss_pred EEEEECCchhhccCCCceeee
Q 012551 401 VAIIDNSPQVFRLQVNNGIPI 421 (461)
Q Consensus 401 VVIIDDsp~~~~~qp~NgIpI 421 (461)
+++|+|++.-.......|++.
T Consensus 166 ~~~igD~~~Di~aa~~aG~~~ 186 (220)
T TIGR03351 166 VAVAGDTPNDLEAGINAGAGA 186 (220)
T ss_pred eEEeCCCHHHHHHHHHCCCCe
Confidence 999999997666555566664
No 71
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=96.05 E-value=0.0029 Score=59.86 Aligned_cols=95 Identities=7% Similarity=0.062 Sum_probs=73.2
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCChHHHHHHHHHHCCCCCeee-eEEEcccceeeCC---ceeeeccccCCCCCcEE
Q 012551 327 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDGKLIS-RRVYRESCIFSDG---TYTKDLTVLGVDLAKVA 402 (461)
Q Consensus 327 V~~RPgL~eFLe~Lsk~YEIVIfTas~~~YA~~ILd~LDP~~klf~-~RLyRe~C~~~~g---~yiKDLs~LgrDLskVV 402 (461)
+...||+.++|+.+. +.++|.|++.+.+++.+++.++-.. +|. ..+..++....+. .|.+-++.+|..++++|
T Consensus 87 ~~~~~gv~~~L~~L~--~~~~ivTn~~~~~~~~~l~~~~l~~-~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~~l 163 (221)
T PRK10563 87 LEPIAGANALLESIT--VPMCVVSNGPVSKMQHSLGKTGMLH-YFPDKLFSGYDIQRWKPDPALMFHAAEAMNVNVENCI 163 (221)
T ss_pred CCcCCCHHHHHHHcC--CCEEEEeCCcHHHHHHHHHhcChHH-hCcceEeeHHhcCCCCCChHHHHHHHHHcCCCHHHeE
Confidence 567899999999994 8999999999999999999887765 675 4455544433232 56677778899999999
Q ss_pred EEECCchhhccCCCceeeeccc
Q 012551 403 IIDNSPQVFRLQVNNGIPIESW 424 (461)
Q Consensus 403 IIDDsp~~~~~qp~NgIpI~s~ 424 (461)
+|+|++.........|+++.-+
T Consensus 164 ~igDs~~di~aA~~aG~~~i~~ 185 (221)
T PRK10563 164 LVDDSSAGAQSGIAAGMEVFYF 185 (221)
T ss_pred EEeCcHhhHHHHHHCCCEEEEE
Confidence 9999998776655677666533
No 72
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=96.05 E-value=0.0079 Score=59.14 Aligned_cols=97 Identities=12% Similarity=0.076 Sum_probs=74.5
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccceeeCC---ceeeeccccCCC-CCcE
Q 012551 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDG---TYTKDLTVLGVD-LAKV 401 (461)
Q Consensus 327 V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~g---~yiKDLs~LgrD-LskV 401 (461)
+..-||+.++|++|. +.+.++|-|++.+..+..+++.+.-.+-+|...+..++....+. .|.+-++.+|.. ++.+
T Consensus 100 ~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~~e~ 179 (267)
T PRK13478 100 ATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQGYRPDHVVTTDDVPAGRPYPWMALKNAIELGVYDVAAC 179 (267)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcCCCceEEEcCCcCCCCCCChHHHHHHHHHcCCCCCcce
Confidence 467899999999997 56999999999999999999988766533466666666543332 566777888875 6899
Q ss_pred EEEECCchhhccCCCceeeecc
Q 012551 402 AIIDNSPQVFRLQVNNGIPIES 423 (461)
Q Consensus 402 VIIDDsp~~~~~qp~NgIpI~s 423 (461)
|+|.|++.-.......|++.-.
T Consensus 180 l~IGDs~~Di~aA~~aG~~~i~ 201 (267)
T PRK13478 180 VKVDDTVPGIEEGLNAGMWTVG 201 (267)
T ss_pred EEEcCcHHHHHHHHHCCCEEEE
Confidence 9999999877666666765443
No 73
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=96.02 E-value=0.0067 Score=60.90 Aligned_cols=97 Identities=12% Similarity=0.162 Sum_probs=70.7
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHHHCCCC--CeeeeEEEcccceeeCC---ceeeeccccCCCCCc
Q 012551 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDG--KLISRRVYRESCIFSDG---TYTKDLTVLGVDLAK 400 (461)
Q Consensus 327 V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~LDP~~--klf~~RLyRe~C~~~~g---~yiKDLs~LgrDLsk 400 (461)
+...||+.++|+++. +.+.++|.|++...++..+++.+.-.+ .+|... ..+.+...+. .|.+-++.+|.++++
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~~~~~~~~v-~~~~~~~~KP~p~~~~~a~~~~~~~p~~ 221 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPERAQGLDVF-AGDDVPKKKPDPDIYNLAAETLGVDPSR 221 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccccccCceEEE-eccccCCCCCCHHHHHHHHHHhCcChHH
Confidence 478999999999998 469999999999999999998773221 223222 3444332222 456667788999999
Q ss_pred EEEEECCchhhccCCCceeeeccc
Q 012551 401 VAIIDNSPQVFRLQVNNGIPIESW 424 (461)
Q Consensus 401 VVIIDDsp~~~~~qp~NgIpI~s~ 424 (461)
+|+|+|++.-+.....+|+.....
T Consensus 222 ~l~IGDs~~Di~aA~~aG~~~i~v 245 (286)
T PLN02779 222 CVVVEDSVIGLQAAKAAGMRCIVT 245 (286)
T ss_pred EEEEeCCHHhHHHHHHcCCEEEEE
Confidence 999999998776666667665544
No 74
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=96.00 E-value=0.0028 Score=59.51 Aligned_cols=99 Identities=18% Similarity=0.097 Sum_probs=69.6
Q ss_pred EEeeCchHHHHHHHhhc-ccEEEEEcCCChHH--HHHHHHHHCCCCCeeeeEEEcccceeeCC---ceeeeccccCCCCC
Q 012551 326 YVKQRPHLKTFLERVAE-MFEVVIFTASQSIY--AAQLLDILDPDGKLISRRVYRESCIFSDG---TYTKDLTVLGVDLA 399 (461)
Q Consensus 326 ~V~~RPgL~eFLe~Lsk-~YEIVIfTas~~~Y--A~~ILd~LDP~~klf~~RLyRe~C~~~~g---~yiKDLs~LgrDLs 399 (461)
.+...||+.++|++|.+ .|.++|.|++...+ +...+..++.. .+|+..+..+.....+. .|.+-++.+|.+++
T Consensus 92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~-~~fd~v~~s~~~~~~KP~p~~~~~~~~~~g~~~~ 170 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIM-ALFDAVVESCLEGLRKPDPRIYQLMLERLGVAPE 170 (211)
T ss_pred ccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhH-hhCCEEEEeeecCCCCCCHHHHHHHHHHcCCCHH
Confidence 35678999999999985 59999999987654 32223222222 36877776554433332 56677788899999
Q ss_pred cEEEEECCchhhccCCCceeeecccc
Q 012551 400 KVAIIDNSPQVFRLQVNNGIPIESWF 425 (461)
Q Consensus 400 kVVIIDDsp~~~~~qp~NgIpI~s~~ 425 (461)
++++|||++.........|+..--+.
T Consensus 171 ~~l~i~D~~~di~aA~~aG~~~i~v~ 196 (211)
T TIGR02247 171 ECVFLDDLGSNLKPAAALGITTIKVS 196 (211)
T ss_pred HeEEEcCCHHHHHHHHHcCCEEEEEC
Confidence 99999999987766666777655443
No 75
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=95.98 E-value=0.0067 Score=61.04 Aligned_cols=93 Identities=16% Similarity=0.135 Sum_probs=55.5
Q ss_pred CCceEEEEecccccccccccc----cCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHH
Q 012551 286 RKSVTLVLDLDETLVHSTLEY----CDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQL 360 (461)
Q Consensus 286 ~kK~tLVLDLDeTLVhSs~~~----~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~I 360 (461)
.+++.+|||||||+++.+.-. .....|.-. .+..-........-||+.+||+++. +...++|.|+....+.+..
T Consensus 73 ~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~-~w~~wv~~~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T 151 (266)
T TIGR01533 73 DKKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPE-TWDKWVQAAQAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAAT 151 (266)
T ss_pred CCCCEEEEeCccccccChHHHHHHhcCCCcCCHH-HHHHHHHcCCCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHH
Confidence 457899999999999876210 111111000 0000001123556799999999997 5589999999887666644
Q ss_pred HHHH---CCCCCeeeeEEEccc
Q 012551 361 LDIL---DPDGKLISRRVYRES 379 (461)
Q Consensus 361 Ld~L---DP~~klf~~RLyRe~ 379 (461)
+..| +.....+.+.+.|+.
T Consensus 152 ~~~Lkk~Gi~~~~~d~lllr~~ 173 (266)
T TIGR01533 152 LKNLKRFGFPQADEEHLLLKKD 173 (266)
T ss_pred HHHHHHcCcCCCCcceEEeCCC
Confidence 4444 443323456666753
No 76
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=95.95 E-value=0.0056 Score=57.04 Aligned_cols=90 Identities=14% Similarity=0.095 Sum_probs=66.7
Q ss_pred eeCchHHHHHHHhhc-ccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccceeeCC---ceeeeccccCCCCCcEEE
Q 012551 328 KQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDG---TYTKDLTVLGVDLAKVAI 403 (461)
Q Consensus 328 ~~RPgL~eFLe~Lsk-~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~g---~yiKDLs~LgrDLskVVI 403 (461)
...||+.++|++|++ .+.++|.|++...+ ..+++.++-.+ +|...+..+.+...+. .|.+-++.+|.+++++|+
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~~-~~~l~~~~l~~-~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~ 182 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFDSRL-RGLLEALGLLE-YFDFVVTSYEVGAEKPDPKIFQEALERAGISPEEALH 182 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCchhH-HHHHHHCCcHH-hcceEEeecccCCCCCCHHHHHHHHHHcCCChhHEEE
Confidence 568999999999985 59999999988764 77888876654 7888777665544433 456677888999999999
Q ss_pred EECCc-hhhccCCCcee
Q 012551 404 IDNSP-QVFRLQVNNGI 419 (461)
Q Consensus 404 IDDsp-~~~~~qp~NgI 419 (461)
|+|++ .-.......|+
T Consensus 183 IgD~~~~Di~~A~~aG~ 199 (203)
T TIGR02252 183 IGDSLRNDYQGARAAGW 199 (203)
T ss_pred ECCCchHHHHHHHHcCC
Confidence 99997 33433333443
No 77
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=95.91 E-value=0.0053 Score=55.94 Aligned_cols=92 Identities=15% Similarity=0.159 Sum_probs=68.1
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccceeeC---CceeeeccccCCCCCcEE
Q 012551 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAKVA 402 (461)
Q Consensus 327 V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~---g~yiKDLs~LgrDLskVV 402 (461)
....||+.++|++|. +.+.+.|-|++. .+..+++.+.-.. +|+..+..++-...+ ..|.+-++.++.+++++|
T Consensus 86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~--~~~~~l~~~~l~~-~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~v 162 (185)
T TIGR01990 86 ADVLPGIKNLLDDLKKNNIKIALASASK--NAPTVLEKLGLID-YFDAIVDPAEIKKGKPDPEIFLAAAEGLGVSPSECI 162 (185)
T ss_pred cccCccHHHHHHHHHHCCCeEEEEeCCc--cHHHHHHhcCcHh-hCcEEEehhhcCCCCCChHHHHHHHHHcCCCHHHeE
Confidence 356899999999998 559999999764 3677888887664 788777654322222 245677778899999999
Q ss_pred EEECCchhhccCCCceeee
Q 012551 403 IIDNSPQVFRLQVNNGIPI 421 (461)
Q Consensus 403 IIDDsp~~~~~qp~NgIpI 421 (461)
+|+|++.-+.....+|+..
T Consensus 163 ~vgD~~~di~aA~~aG~~~ 181 (185)
T TIGR01990 163 GIEDAQAGIEAIKAAGMFA 181 (185)
T ss_pred EEecCHHHHHHHHHcCCEE
Confidence 9999997776655666654
No 78
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=95.90 E-value=0.013 Score=56.99 Aligned_cols=67 Identities=15% Similarity=0.118 Sum_probs=51.9
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCChHHHH--HHHHHH
Q 012551 288 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAA--QLLDIL 364 (461)
Q Consensus 288 K~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~--~ILd~L 364 (461)
-..+++|+||||.+.. ..-||+.++|++|. +.+.++|.|++.+..++ +.++.+
T Consensus 8 ~~~~~~D~dG~l~~~~------------------------~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~ 63 (242)
T TIGR01459 8 YDVFLLDLWGVIIDGN------------------------HTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSL 63 (242)
T ss_pred CCEEEEecccccccCC------------------------ccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHC
Confidence 3478999999997642 23699999999998 56999999999988777 778888
Q ss_pred CCCCCeeeeEEEcc
Q 012551 365 DPDGKLISRRVYRE 378 (461)
Q Consensus 365 DP~~klf~~RLyRe 378 (461)
+....+|...+...
T Consensus 64 gl~~~~~~~Ii~s~ 77 (242)
T TIGR01459 64 GINADLPEMIISSG 77 (242)
T ss_pred CCCccccceEEccH
Confidence 76532566666644
No 79
>PLN02940 riboflavin kinase
Probab=95.83 E-value=0.0055 Score=64.17 Aligned_cols=94 Identities=11% Similarity=0.092 Sum_probs=74.9
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHH-HHCCCCCeeeeEEEcccceeeCC---ceeeeccccCCCCCcE
Q 012551 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLD-ILDPDGKLISRRVYRESCIFSDG---TYTKDLTVLGVDLAKV 401 (461)
Q Consensus 327 V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd-~LDP~~klf~~RLyRe~C~~~~g---~yiKDLs~LgrDLskV 401 (461)
+...||+.++|++|. +.+.+.|-|++.+.++..+++ .++-. .+|+.++..+++...+. .|.+-++.+|..++++
T Consensus 92 ~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~-~~Fd~ii~~d~v~~~KP~p~~~~~a~~~lgv~p~~~ 170 (382)
T PLN02940 92 IKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWK-ESFSVIVGGDEVEKGKPSPDIFLEAAKRLNVEPSNC 170 (382)
T ss_pred CCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChH-hhCCEEEehhhcCCCCCCHHHHHHHHHHcCCChhHE
Confidence 467899999999997 559999999999999998887 55544 48999888887654443 5667778889999999
Q ss_pred EEEECCchhhccCCCceeee
Q 012551 402 AIIDNSPQVFRLQVNNGIPI 421 (461)
Q Consensus 402 VIIDDsp~~~~~qp~NgIpI 421 (461)
|+|+|++.-.......|+..
T Consensus 171 l~VGDs~~Di~aA~~aGi~~ 190 (382)
T PLN02940 171 LVIEDSLPGVMAGKAAGMEV 190 (382)
T ss_pred EEEeCCHHHHHHHHHcCCEE
Confidence 99999997765555566553
No 80
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=95.79 E-value=0.012 Score=55.29 Aligned_cols=114 Identities=16% Similarity=0.122 Sum_probs=69.4
Q ss_pred CceEEEEecccccccccc-cccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHHH
Q 012551 287 KSVTLVLDLDETLVHSTL-EYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDIL 364 (461)
Q Consensus 287 kK~tLVLDLDeTLVhSs~-~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~L 364 (461)
+.+.+|+|+||||+.... .... +.....+.. |.+ .=++.+. +.++++|-|......+..+++.+
T Consensus 20 ~ikli~~D~Dgtl~~~~i~~~~~-----------~~~~~~~~~-~d~--~~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~l 85 (183)
T PRK09484 20 NIRLLICDVDGVFSDGLIYMGNN-----------GEELKAFNV-RDG--YGIRCLLTSGIEVAIITGRKSKLVEDRMTTL 85 (183)
T ss_pred CceEEEEcCCeeeecCEEEEcCC-----------CCEEEEEec-cch--HHHHHHHHCCCEEEEEeCCCcHHHHHHHHHc
Confidence 467999999999997531 1110 111111111 222 1233444 67999999999999999999998
Q ss_pred CCCCCeeeeEEEcccceeeCCceeeeccccCCCCCcEEEEECCchhhccCCCceeee
Q 012551 365 DPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPI 421 (461)
Q Consensus 365 DP~~klf~~RLyRe~C~~~~g~yiKDLs~LgrDLskVVIIDDsp~~~~~qp~NgIpI 421 (461)
.... +|. .+......+.+-+..+|.++++++.|-|+..-...-...|+.+
T Consensus 86 gl~~-~f~------g~~~k~~~l~~~~~~~gl~~~ev~~VGDs~~D~~~a~~aG~~~ 135 (183)
T PRK09484 86 GITH-LYQ------GQSNKLIAFSDLLEKLAIAPEQVAYIGDDLIDWPVMEKVGLSV 135 (183)
T ss_pred CCce-eec------CCCcHHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHHCCCeE
Confidence 7653 443 1110111233445667889999999999986554433345543
No 81
>PRK08238 hypothetical protein; Validated
Probab=95.75 E-value=0.01 Score=64.22 Aligned_cols=48 Identities=15% Similarity=0.090 Sum_probs=40.4
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcc
Q 012551 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRE 378 (461)
Q Consensus 327 V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe 378 (461)
...+|++.++|+++. +.+.++|-|++.+.+++++++.++- |+..+..+
T Consensus 71 lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGl----Fd~Vigsd 119 (479)
T PRK08238 71 LPYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGL----FDGVFASD 119 (479)
T ss_pred CCCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC----CCEEEeCC
Confidence 357899999999997 6699999999999999999999854 55555544
No 82
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=95.68 E-value=0.018 Score=53.81 Aligned_cols=80 Identities=16% Similarity=0.186 Sum_probs=64.4
Q ss_pred eCchHHHHHHHhhc-ccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccceeeCC---ceeeeccccCCCCCcEEEE
Q 012551 329 QRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDG---TYTKDLTVLGVDLAKVAII 404 (461)
Q Consensus 329 ~RPgL~eFLe~Lsk-~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~g---~yiKDLs~LgrDLskVVII 404 (461)
..|+..++|+.|.+ .+.++|.|++.+.+++.+++.+.-.. +|...+..++... +. .+.+-++.+|.+++++|+|
T Consensus 107 ~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~-~f~~~~~~~~~~~-KP~p~~~~~~~~~~~~~~~~~i~v 184 (197)
T TIGR01548 107 TLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEI-LFPVQIWMEDCPP-KPNPEPLILAAKALGVEACHAAMV 184 (197)
T ss_pred cccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchh-hCCEEEeecCCCC-CcCHHHHHHHHHHhCcCcccEEEE
Confidence 44566999999985 59999999999999999999998764 8888877665433 32 4566677789999999999
Q ss_pred ECCchh
Q 012551 405 DNSPQV 410 (461)
Q Consensus 405 DDsp~~ 410 (461)
.|++.-
T Consensus 185 GD~~~D 190 (197)
T TIGR01548 185 GDTVDD 190 (197)
T ss_pred eCCHHH
Confidence 999853
No 83
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=95.67 E-value=0.0088 Score=58.35 Aligned_cols=95 Identities=12% Similarity=0.085 Sum_probs=68.9
Q ss_pred EEeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHHHC---CCCCeeeeEEEccccee-eCCceeeeccccCCCCCc
Q 012551 326 YVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILD---PDGKLISRRVYRESCIF-SDGTYTKDLTVLGVDLAK 400 (461)
Q Consensus 326 ~V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~LD---P~~klf~~RLyRe~C~~-~~g~yiKDLs~LgrDLsk 400 (461)
...+.|++.++|+++. +.+.++|+|++...+...+++..+ -. .+|+..+....+.. ....|.+-++.+|.++++
T Consensus 93 ~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~-~~f~~~fd~~~g~KP~p~~y~~i~~~lgv~p~e 171 (220)
T TIGR01691 93 TSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLT-PYFSGYFDTTVGLKTEAQSYVKIAGQLGSPPRE 171 (220)
T ss_pred ccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchh-hhcceEEEeCcccCCCHHHHHHHHHHhCcChhH
Confidence 3567899999999997 569999999999999999888763 22 24554432211211 112567778889999999
Q ss_pred EEEEECCchhhccCCCceeee
Q 012551 401 VAIIDNSPQVFRLQVNNGIPI 421 (461)
Q Consensus 401 VVIIDDsp~~~~~qp~NgIpI 421 (461)
+++|+|++.-.......|+..
T Consensus 172 ~lfVgDs~~Di~AA~~AG~~t 192 (220)
T TIGR01691 172 ILFLSDIINELDAARKAGLHT 192 (220)
T ss_pred EEEEeCCHHHHHHHHHcCCEE
Confidence 999999997765555566554
No 84
>PHA02597 30.2 hypothetical protein; Provisional
Probab=95.64 E-value=0.0047 Score=57.52 Aligned_cols=96 Identities=13% Similarity=0.113 Sum_probs=66.1
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCChHHHHHHHHHHCCCC---CeeeeEEEcccceeeCCceeeeccccCCCCCcEEE
Q 012551 327 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDG---KLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAI 403 (461)
Q Consensus 327 V~~RPgL~eFLe~Lsk~YEIVIfTas~~~YA~~ILd~LDP~~---klf~~RLyRe~C~~~~g~yiKDLs~LgrDLskVVI 403 (461)
+...||+.++|++|.+.+.+++-|++.......+++.+...+ .+|+..+..+........+.+-++.+| ++.+|+
T Consensus 73 ~~~~pG~~e~L~~L~~~~~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~i~~~~~~~~kp~~~~~a~~~~~--~~~~v~ 150 (197)
T PHA02597 73 LSAYDDALDVINKLKEDYDFVAVTALGDSIDALLNRQFNLNALFPGAFSEVLMCGHDESKEKLFIKAKEKYG--DRVVCF 150 (197)
T ss_pred ccCCCCHHHHHHHHHhcCCEEEEeCCccchhHHHHhhCCHHHhCCCcccEEEEeccCcccHHHHHHHHHHhC--CCcEEE
Confidence 668999999999999878887777776665555666664332 245666655554222223444556677 678999
Q ss_pred EECCchhhccCCCc--eeeeccc
Q 012551 404 IDNSPQVFRLQVNN--GIPIESW 424 (461)
Q Consensus 404 IDDsp~~~~~qp~N--gIpI~s~ 424 (461)
|||++........+ ||..--+
T Consensus 151 vgDs~~di~aA~~a~~Gi~~i~~ 173 (197)
T PHA02597 151 VDDLAHNLDAAHEALSQLPVIHM 173 (197)
T ss_pred eCCCHHHHHHHHHHHcCCcEEEe
Confidence 99999988776677 8876644
No 85
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=95.61 E-value=0.015 Score=51.66 Aligned_cols=81 Identities=12% Similarity=0.074 Sum_probs=63.1
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccceeeCC---ceeeeccccCCCCCcEE
Q 012551 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDG---TYTKDLTVLGVDLAKVA 402 (461)
Q Consensus 327 V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~g---~yiKDLs~LgrDLskVV 402 (461)
....||+.++|+++. +.+.++|.|++.+..+..+++.+ - ..+|...+..++.. .+. .|.+-++.+|.+. +++
T Consensus 63 ~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l-~~~f~~i~~~~~~~-~Kp~~~~~~~~~~~~~~~~-~~l 138 (154)
T TIGR01549 63 EAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-L-GDYFDLILGSDEFG-AKPEPEIFLAALESLGLPP-EVL 138 (154)
T ss_pred heeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-H-HhcCcEEEecCCCC-CCcCHHHHHHHHHHcCCCC-CEE
Confidence 445699999999996 56999999999999999999996 2 34687777766654 332 4556667788888 999
Q ss_pred EEECCchhh
Q 012551 403 IIDNSPQVF 411 (461)
Q Consensus 403 IIDDsp~~~ 411 (461)
+|.|++.-.
T Consensus 139 ~iGDs~~Di 147 (154)
T TIGR01549 139 HVGDNLNDI 147 (154)
T ss_pred EEeCCHHHH
Confidence 999997533
No 86
>PLN02811 hydrolase
Probab=95.34 E-value=0.01 Score=56.56 Aligned_cols=97 Identities=13% Similarity=0.108 Sum_probs=69.3
Q ss_pred EeeCchHHHHHHHhhc-ccEEEEEcCCChHHHHH-HHHHHCCCCCeeeeEEEcc--cceeeCC---ceeeeccccC---C
Q 012551 327 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQ-LLDILDPDGKLISRRVYRE--SCIFSDG---TYTKDLTVLG---V 396 (461)
Q Consensus 327 V~~RPgL~eFLe~Lsk-~YEIVIfTas~~~YA~~-ILd~LDP~~klf~~RLyRe--~C~~~~g---~yiKDLs~Lg---r 396 (461)
+.+.||+.++|+.|++ .|.++|-|++.+.+... +++..... .+|...+..+ ++...+. .|.+-+..+| .
T Consensus 77 ~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~-~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~ 155 (220)
T PLN02811 77 SDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELF-SLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDGPV 155 (220)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHH-hhCCEEEECChhhccCCCCCcHHHHHHHHHhCCCCC
Confidence 4568999999999985 59999999998875554 33332222 3788888877 5543332 5566666675 8
Q ss_pred CCCcEEEEECCchhhccCCCceeeeccc
Q 012551 397 DLAKVAIIDNSPQVFRLQVNNGIPIESW 424 (461)
Q Consensus 397 DLskVVIIDDsp~~~~~qp~NgIpI~s~ 424 (461)
.++++|+|+|++.-.......|++.-..
T Consensus 156 ~~~~~v~IgDs~~di~aA~~aG~~~i~v 183 (220)
T PLN02811 156 DPGKVLVFEDAPSGVEAAKNAGMSVVMV 183 (220)
T ss_pred CccceEEEeccHhhHHHHHHCCCeEEEE
Confidence 8999999999998776666666665544
No 87
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=95.28 E-value=0.028 Score=54.48 Aligned_cols=85 Identities=14% Similarity=0.246 Sum_probs=62.8
Q ss_pred EeeCchHHHHHHHhhcc-cEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccceeeC---Ccee----ee------cc
Q 012551 327 VKQRPHLKTFLERVAEM-FEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYT----KD------LT 392 (461)
Q Consensus 327 V~~RPgL~eFLe~Lsk~-YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~---g~yi----KD------Ls 392 (461)
.+++||+.+.++++.+. +.++|.|+|...++++|.+.|..+. .+..++-.++-.+.. |..+ |. ++
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~-~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~ 154 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDY-VVANELEIDDGKLTGRVVGPICDGEGKAKALRELAA 154 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCch-heeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHH
Confidence 88999999999999955 9999999999999999999999886 566666655411211 1111 11 12
Q ss_pred ccCCCCCcEEEEECCchhhc
Q 012551 393 VLGVDLAKVAIIDNSPQVFR 412 (461)
Q Consensus 393 ~LgrDLskVVIIDDsp~~~~ 412 (461)
.+|.++++++-+=|+..-..
T Consensus 155 ~~g~~~~~~~a~gDs~nDlp 174 (212)
T COG0560 155 ELGIPLEETVAYGDSANDLP 174 (212)
T ss_pred HcCCCHHHeEEEcCchhhHH
Confidence 35788888998888876543
No 88
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=95.07 E-value=0.029 Score=66.22 Aligned_cols=96 Identities=10% Similarity=0.106 Sum_probs=78.3
Q ss_pred eCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccceeeCC---ceeeeccccCCCCCcEEEE
Q 012551 329 QRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDG---TYTKDLTVLGVDLAKVAII 404 (461)
Q Consensus 329 ~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~g---~yiKDLs~LgrDLskVVII 404 (461)
..||+.++|++|. +.|.++|.|++...+++.+++.+.-...+|+..+..+++...+. .|.+-++.+|.+++++|+|
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~lgv~p~e~v~I 241 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAKILGVPTSECVVI 241 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCCEEEECcccccCCCCHHHHHHHHHHcCcCcccEEEE
Confidence 4899999999998 56999999999999999999998865457888888777654443 5677788899999999999
Q ss_pred ECCchhhccCCCceeeeccc
Q 012551 405 DNSPQVFRLQVNNGIPIESW 424 (461)
Q Consensus 405 DDsp~~~~~qp~NgIpI~s~ 424 (461)
+|++.-.......|+..-..
T Consensus 242 gDs~~Di~AA~~aGm~~I~v 261 (1057)
T PLN02919 242 EDALAGVQAARAAGMRCIAV 261 (1057)
T ss_pred cCCHHHHHHHHHcCCEEEEE
Confidence 99998776666666655443
No 89
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=94.97 E-value=0.079 Score=51.67 Aligned_cols=60 Identities=32% Similarity=0.347 Sum_probs=51.3
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHHHCC
Q 012551 288 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDP 366 (461)
Q Consensus 288 K~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~LDP 366 (461)
.+.|++||||||+..... .+|...+.|+++. +...++|-|......+.++++.|..
T Consensus 3 ~kli~~DlDGTLl~~~~~-----------------------i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~ 59 (264)
T COG0561 3 IKLLAFDLDGTLLDSNKT-----------------------ISPETKEALARLREKGVKVVLATGRPLPDVLSILEELGL 59 (264)
T ss_pred eeEEEEcCCCCccCCCCc-----------------------cCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCC
Confidence 578999999999987421 5888999999885 7799999999999999999999998
Q ss_pred CCCe
Q 012551 367 DGKL 370 (461)
Q Consensus 367 ~~kl 370 (461)
.+.+
T Consensus 60 ~~~~ 63 (264)
T COG0561 60 DGPL 63 (264)
T ss_pred CccE
Confidence 8633
No 90
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=94.92 E-value=0.054 Score=51.71 Aligned_cols=96 Identities=11% Similarity=0.063 Sum_probs=63.8
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEE--cccceeeCC-------------ceeee
Q 012551 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVY--RESCIFSDG-------------TYTKD 390 (461)
Q Consensus 327 V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLy--Re~C~~~~g-------------~yiKD 390 (461)
+.+|||+.+||+++. +.+.++|.|++...|++.+++.+-+...++...+. .+.....+. ...+-
T Consensus 73 ~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~K~~~ 152 (219)
T PRK09552 73 AEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGLIPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCCKPSL 152 (219)
T ss_pred CCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHhCCcCcEEEeEEEecCCeeEEeccCCccccccccCCCchHHH
Confidence 678999999999998 45999999999999999999987222223322221 111111100 11233
Q ss_pred ccccCCCCCcEEEEECCchhhccCCCceeeec
Q 012551 391 LTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIE 422 (461)
Q Consensus 391 Ls~LgrDLskVVIIDDsp~~~~~qp~NgIpI~ 422 (461)
++.++.+..++|.|-|+..-.......|+.+.
T Consensus 153 l~~~~~~~~~~i~iGDs~~Di~aa~~Ag~~~a 184 (219)
T PRK09552 153 IRKLSDTNDFHIVIGDSITDLEAAKQADKVFA 184 (219)
T ss_pred HHHhccCCCCEEEEeCCHHHHHHHHHCCccee
Confidence 44557777899999999976655555666443
No 91
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=94.74 E-value=0.077 Score=52.42 Aligned_cols=58 Identities=21% Similarity=0.169 Sum_probs=47.3
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCChHHHHHHHHHHCC
Q 012551 288 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDP 366 (461)
Q Consensus 288 K~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk-~YEIVIfTas~~~YA~~ILd~LDP 366 (461)
.+.+++||||||+.... ...|...+.|+++.+ .+.++|-|......+..+++.++.
T Consensus 4 ~kli~~DlDGTLl~~~~-----------------------~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l 60 (273)
T PRK00192 4 KLLVFTDLDGTLLDHHT-----------------------YSYEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGL 60 (273)
T ss_pred ceEEEEcCcccCcCCCC-----------------------cCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCC
Confidence 46899999999996421 135778899999985 499999999999999999999876
Q ss_pred CC
Q 012551 367 DG 368 (461)
Q Consensus 367 ~~ 368 (461)
..
T Consensus 61 ~~ 62 (273)
T PRK00192 61 ED 62 (273)
T ss_pred CC
Confidence 53
No 92
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=94.66 E-value=0.047 Score=52.20 Aligned_cols=126 Identities=18% Similarity=0.258 Sum_probs=83.4
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCC------------h
Q 012551 288 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQ------------S 354 (461)
Q Consensus 288 K~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk-~YEIVIfTas~------------~ 354 (461)
.+.|+||.||||.--.. +|. .. .--..+.||+.+-|..+.+ .|.+||+|.-. .
T Consensus 5 ~k~lflDRDGtin~d~~------~yv-----~~---~~~~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~ 70 (181)
T COG0241 5 QKALFLDRDGTINIDKG------DYV-----DS---LDDFQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFD 70 (181)
T ss_pred CcEEEEcCCCceecCCC------ccc-----Cc---HHHhccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHH
Confidence 57999999999964211 010 00 0014568999999999974 59999999943 3
Q ss_pred HHHHHHHHHHCCCCCeeeeEEEccc-----ceeeC---CceeeeccccCCCCCcEEEEECCchhhccCCCc---eeeecc
Q 012551 355 IYAAQLLDILDPDGKLISRRVYRES-----CIFSD---GTYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNN---GIPIES 423 (461)
Q Consensus 355 ~YA~~ILd~LDP~~klf~~RLyRe~-----C~~~~---g~yiKDLs~LgrDLskVVIIDDsp~~~~~qp~N---gIpI~s 423 (461)
.+-+.++..|--.|.-|+.+++..| |.+.+ |.+..-++..+.|+++.++|=|+..-..+.... ++.+..
T Consensus 71 ~~~~~m~~~l~~~gv~id~i~~Cph~p~~~c~cRKP~~gm~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi~~~~~~~ 150 (181)
T COG0241 71 KLHNKMLKILASQGVKIDGILYCPHHPEDNCDCRKPKPGMLLSALKEYNIDLSRSYVVGDRLTDLQAAENAGIKGVLVLT 150 (181)
T ss_pred HHHHHHHHHHHHcCCccceEEECCCCCCCCCcccCCChHHHHHHHHHhCCCccceEEecCcHHHHHHHHHCCCCceEEEc
Confidence 3444577777777777999999543 55554 355555666778999999999996544322212 555555
Q ss_pred ccCC
Q 012551 424 WFDD 427 (461)
Q Consensus 424 ~~gd 427 (461)
|.+.
T Consensus 151 ~~~~ 154 (181)
T COG0241 151 GIGV 154 (181)
T ss_pred Cccc
Confidence 5543
No 93
>PTZ00445 p36-lilke protein; Provisional
Probab=94.52 E-value=0.021 Score=55.96 Aligned_cols=132 Identities=15% Similarity=0.161 Sum_probs=77.3
Q ss_pred CCCceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCChHH-------
Q 012551 285 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQSIY------- 356 (461)
Q Consensus 285 ~~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk-~YEIVIfTas~~~Y------- 356 (461)
..+-+.+++|||.|||-.-.....++ ......+.-..||.+..+++.|.+ .+.|+|-|-+.+.-
T Consensus 40 ~~GIk~Va~D~DnTlI~~HsgG~~~~--------~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~ 111 (219)
T PTZ00445 40 ECGIKVIASDFDLTMITKHSGGYIDP--------DNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRP 111 (219)
T ss_pred HcCCeEEEecchhhhhhhhcccccCC--------CcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCc
Confidence 45667999999999986321100000 001122345679999999999985 69999999998754
Q ss_pred --------HHHHHHHHCCCCCeeee------EEEcccceee-----C---Cc--e--eeeccccCCCCCcEEEEECCchh
Q 012551 357 --------AAQLLDILDPDGKLISR------RVYRESCIFS-----D---GT--Y--TKDLTVLGVDLAKVAIIDNSPQV 410 (461)
Q Consensus 357 --------A~~ILd~LDP~~klf~~------RLyRe~C~~~-----~---g~--y--iKDLs~LgrDLskVVIIDDsp~~ 410 (461)
+...|+.=.-.-+ +.. +++++.-.+. + +. | .+=++..|.+++.+++|||++..
T Consensus 112 ~~Isg~~li~~~lk~s~~~~~-i~~~~~yyp~~w~~p~~y~~~gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~~N 190 (219)
T PTZ00445 112 RYISGDRMVEAALKKSKCDFK-IKKVYAYYPKFWQEPSDYRPLGLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDMNN 190 (219)
T ss_pred ceechHHHHHHHHHhcCccce-eeeeeeeCCcccCChhhhhhhcccCCCccchHHHHHHHHHHcCCCHHHeEeecCCHHH
Confidence 4444443211111 111 1122221111 1 11 3 34455669999999999999998
Q ss_pred hccCCCceeeecccc
Q 012551 411 FRLQVNNGIPIESWF 425 (461)
Q Consensus 411 ~~~qp~NgIpI~s~~ 425 (461)
......-|+...-+.
T Consensus 191 VeaA~~lGi~ai~f~ 205 (219)
T PTZ00445 191 CKNALKEGYIALHVT 205 (219)
T ss_pred HHHHHHCCCEEEEcC
Confidence 866555566554443
No 94
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=94.45 E-value=0.091 Score=48.99 Aligned_cols=54 Identities=28% Similarity=0.284 Sum_probs=44.6
Q ss_pred EEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHHHCCC
Q 012551 291 LVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPD 367 (461)
Q Consensus 291 LVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~LDP~ 367 (461)
|++||||||+++... .-|...+.|+.+. +...++|.|.-....+..+++.+.-.
T Consensus 1 i~~DlDGTLl~~~~~-----------------------i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~ 55 (254)
T PF08282_consen 1 IFSDLDGTLLNSDGK-----------------------ISPETIEALKELQEKGIKLVIATGRSYSSIKRLLKELGID 55 (254)
T ss_dssp EEEECCTTTCSTTSS-----------------------SCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTTHC
T ss_pred cEEEECCceecCCCe-----------------------eCHHHHHHHHhhcccceEEEEEccCcccccccccccccch
Confidence 689999999985421 3577888899888 77999999999999999999977644
No 95
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=94.35 E-value=0.01 Score=53.97 Aligned_cols=76 Identities=13% Similarity=0.126 Sum_probs=62.1
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccceeeCC---ceeeeccccCCCCCcEEE
Q 012551 327 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDG---TYTKDLTVLGVDLAKVAI 403 (461)
Q Consensus 327 V~~RPgL~eFLe~Lsk~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~g---~yiKDLs~LgrDLskVVI 403 (461)
+..+||+.++|+. ++|.|++.+.+...+++.+.... +|+..+..+.....+. .|.+-++++|.+++++++
T Consensus 89 ~~~~~g~~~~L~~------~~i~Tn~~~~~~~~~l~~~~l~~-~fd~v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~l~ 161 (175)
T TIGR01493 89 LPPWPDSAAALAR------VAILSNASHWAFDQFAQQAGLPW-YFDRAFSVDTVRAYKPDPVVYELVFDTVGLPPDRVLM 161 (175)
T ss_pred CCCCCchHHHHHH------HhhhhCCCHHHHHHHHHHCCCHH-HHhhhccHhhcCCCCCCHHHHHHHHHHHCCCHHHeEe
Confidence 5579999999993 78999999999999999987654 7887777665444433 567778889999999999
Q ss_pred EECCch
Q 012551 404 IDNSPQ 409 (461)
Q Consensus 404 IDDsp~ 409 (461)
|+|++.
T Consensus 162 vgD~~~ 167 (175)
T TIGR01493 162 VAAHQW 167 (175)
T ss_pred EecChh
Confidence 999974
No 96
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=94.22 E-value=0.041 Score=58.74 Aligned_cols=92 Identities=13% Similarity=0.173 Sum_probs=68.6
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEccccee-eCC-ceeeeccccCCCCCcEEE
Q 012551 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIF-SDG-TYTKDLTVLGVDLAKVAI 403 (461)
Q Consensus 327 V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~-~~g-~yiKDLs~LgrDLskVVI 403 (461)
+..+||+.++|+++. +.+.+.|.|++.+.++..+++.++-.. ||...+..+.... .+. .+.+-++.+ +++++|+
T Consensus 329 ~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~-~f~~i~~~d~v~~~~kP~~~~~al~~l--~~~~~v~ 405 (459)
T PRK06698 329 GALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQ-WVTETFSIEQINSLNKSDLVKSILNKY--DIKEAAV 405 (459)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHh-hcceeEecCCCCCCCCcHHHHHHHHhc--CcceEEE
Confidence 567899999999997 569999999999999999999988765 7888777655321 111 333334444 4588999
Q ss_pred EECCchhhccCCCceeee
Q 012551 404 IDNSPQVFRLQVNNGIPI 421 (461)
Q Consensus 404 IDDsp~~~~~qp~NgIpI 421 (461)
|.|++.-+......|+..
T Consensus 406 VGDs~~Di~aAk~AG~~~ 423 (459)
T PRK06698 406 VGDRLSDINAAKDNGLIA 423 (459)
T ss_pred EeCCHHHHHHHHHCCCeE
Confidence 999997665555566543
No 97
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=94.17 E-value=0.15 Score=50.25 Aligned_cols=59 Identities=19% Similarity=0.252 Sum_probs=45.8
Q ss_pred CCceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHHH
Q 012551 286 RKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDIL 364 (461)
Q Consensus 286 ~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~L 364 (461)
+.++.+++||||||++.... .-|-..+-|+++. +...++|.|.-....+..+++.|
T Consensus 5 ~~~~lI~~DlDGTLL~~~~~-----------------------i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l 61 (271)
T PRK03669 5 QDPLLIFTDLDGTLLDSHTY-----------------------DWQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTL 61 (271)
T ss_pred CCCeEEEEeCccCCcCCCCc-----------------------CcHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHh
Confidence 34679999999999975210 1244667788887 55999999999999999999998
Q ss_pred CCC
Q 012551 365 DPD 367 (461)
Q Consensus 365 DP~ 367 (461)
+..
T Consensus 62 ~~~ 64 (271)
T PRK03669 62 GLQ 64 (271)
T ss_pred CCC
Confidence 764
No 98
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=94.11 E-value=0.12 Score=44.40 Aligned_cols=51 Identities=24% Similarity=0.277 Sum_probs=37.4
Q ss_pred EEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcc-cEEEEEcCCChHHHHHHHHHHC
Q 012551 291 LVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEM-FEVVIFTASQSIYAAQLLDILD 365 (461)
Q Consensus 291 LVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk~-YEIVIfTas~~~YA~~ILd~LD 365 (461)
+++|+||||.+-. ..=||+.+||++|.+. ..+++.|++...-...+.++|.
T Consensus 1 ~l~D~dGvl~~g~------------------------~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~ 52 (101)
T PF13344_consen 1 FLFDLDGVLYNGN------------------------EPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLK 52 (101)
T ss_dssp EEEESTTTSEETT------------------------EE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHH
T ss_pred CEEeCccEeEeCC------------------------CcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHH
Confidence 5899999998642 1249999999999965 9999999998665555555553
No 99
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=93.90 E-value=0.087 Score=49.47 Aligned_cols=105 Identities=12% Similarity=0.109 Sum_probs=68.0
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceee-eEEEeeCchHHHHHHHh-hcccEEEEEcCCChHHHHHHHHHHC
Q 012551 288 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEH-TVYVKQRPHLKTFLERV-AEMFEVVIFTASQSIYAAQLLDILD 365 (461)
Q Consensus 288 K~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~-~~~V~~RPgL~eFLe~L-sk~YEIVIfTas~~~YA~~ILd~LD 365 (461)
-+++|+|.||+|-.-+. .++..+. ..-+..|-+.-- +.| .+.+.+.|.|+....+++.+++.+.
T Consensus 7 i~~~v~d~dGv~tdg~~------------~~~~~g~~~~~~~~~D~~~~--~~L~~~Gi~laIiT~k~~~~~~~~l~~lg 72 (169)
T TIGR02726 7 IKLVILDVDGVMTDGRI------------VINDEGIESRNFDIKDGMGV--IVLQLCGIDVAIITSKKSGAVRHRAEELK 72 (169)
T ss_pred CeEEEEeCceeeECCeE------------EEcCCCcEEEEEecchHHHH--HHHHHCCCEEEEEECCCcHHHHHHHHHCC
Confidence 56899999999976531 1122121 223445555542 233 3679999999999999999999997
Q ss_pred CCCCeeeeEEEcccceeeCCceeeeccccCCCCCcEEEEECCchhhcc
Q 012551 366 PDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVFRL 413 (461)
Q Consensus 366 P~~klf~~RLyRe~C~~~~g~yiKDLs~LgrDLskVVIIDDsp~~~~~ 413 (461)
-.. +|... ......+.+-+..+|.++++++.|-|++.-...
T Consensus 73 i~~-~f~~~------kpkp~~~~~~~~~l~~~~~ev~~iGD~~nDi~~ 113 (169)
T TIGR02726 73 IKR-FHEGI------KKKTEPYAQMLEEMNISDAEVCYVGDDLVDLSM 113 (169)
T ss_pred CcE-EEecC------CCCHHHHHHHHHHcCcCHHHEEEECCCHHHHHH
Confidence 763 55421 000112334445678888999999999865433
No 100
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=93.83 E-value=0.17 Score=47.91 Aligned_cols=57 Identities=16% Similarity=0.229 Sum_probs=46.6
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCChHHHHHHHHHHCCC
Q 012551 289 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPD 367 (461)
Q Consensus 289 ~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk-~YEIVIfTas~~~YA~~ILd~LDP~ 367 (461)
+.+++||||||+.... ...|...+-|+++.+ .+.++|-|......+.++++.|+..
T Consensus 2 k~v~~DlDGTLl~~~~-----------------------~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~ 58 (215)
T TIGR01487 2 KLVAIDIDGTLTEPNR-----------------------MISERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTS 58 (215)
T ss_pred cEEEEecCCCcCCCCc-----------------------ccCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCC
Confidence 4789999999985320 246778888999984 4999999999999999999999877
Q ss_pred C
Q 012551 368 G 368 (461)
Q Consensus 368 ~ 368 (461)
+
T Consensus 59 ~ 59 (215)
T TIGR01487 59 G 59 (215)
T ss_pred C
Confidence 4
No 101
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=93.75 E-value=0.096 Score=48.54 Aligned_cols=106 Identities=20% Similarity=0.225 Sum_probs=54.7
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCC---h----------
Q 012551 289 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQ---S---------- 354 (461)
Q Consensus 289 ~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk-~YEIVIfTas~---~---------- 354 (461)
+.+.|||||||+....... | . ....=+..+-|++-+-|+++.+ .|.|||+|.-. +
T Consensus 1 Kia~fD~DgTLi~~~s~~~----f------~-~~~~D~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~ 69 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSGKK----F------P-KDPDDWKFFPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENF 69 (159)
T ss_dssp SEEEE-SCTTTEE-STSTT----S--------SSTCGGEEC-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHH
T ss_pred CEEEEeCCCCccCCCCCCc----C------c-CCHHHhhhcchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHH
Confidence 4789999999998753211 0 0 0001124456789999999984 69999999752 1
Q ss_pred -HHHHHHHHHHCCCCCeeeeEEE-cccceeeC---Cce---eeeccc-cCCCCCcEEEEECCch
Q 012551 355 -IYAAQLLDILDPDGKLISRRVY-RESCIFSD---GTY---TKDLTV-LGVDLAKVAIIDNSPQ 409 (461)
Q Consensus 355 -~YA~~ILd~LDP~~klf~~RLy-Re~C~~~~---g~y---iKDLs~-LgrDLskVVIIDDsp~ 409 (461)
...+.+++.|+- .+ ..++ .++..+.+ |++ .+++.. +..|+++.+.|=|+..
T Consensus 70 ~~ki~~il~~l~i---p~-~~~~a~~~d~~RKP~~GM~~~~~~~~~~~~~id~~~Sf~VGDaag 129 (159)
T PF08645_consen 70 HEKIENILKELGI---PI-QVYAAPHKDPCRKPNPGMWEFALKDYNDGVEIDLANSFYVGDAAG 129 (159)
T ss_dssp HHHHHHHHHHCTS----E-EEEECGCSSTTSTTSSHHHHHHCCCTSTT--S-CCC-EEEESSCH
T ss_pred HHHHHHHHHHcCC---ce-EEEecCCCCCCCCCchhHHHHHHHhccccccccccceEEEeccCC
Confidence 223345555532 22 2232 12212222 333 333333 2358899999988654
No 102
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=93.65 E-value=0.19 Score=49.06 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=45.4
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHHHCC
Q 012551 288 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDP 366 (461)
Q Consensus 288 K~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~LDP 366 (461)
.+.+++||||||++... ..-|...+-|+++. +...++|-|.-....+..+++.+..
T Consensus 3 ~kli~~DlDGTLl~~~~-----------------------~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~ 59 (270)
T PRK10513 3 IKLIAIDMDGTLLLPDH-----------------------TISPAVKQAIAAARAKGVNVVLTTGRPYAGVHRYLKELHM 59 (270)
T ss_pred eEEEEEecCCcCcCCCC-----------------------ccCHHHHHHHHHHHHCCCEEEEecCCChHHHHHHHHHhCC
Confidence 46899999999997531 13456778888887 4589999999999999999999876
Q ss_pred C
Q 012551 367 D 367 (461)
Q Consensus 367 ~ 367 (461)
.
T Consensus 60 ~ 60 (270)
T PRK10513 60 E 60 (270)
T ss_pred C
Confidence 4
No 103
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=93.62 E-value=0.12 Score=49.16 Aligned_cols=94 Identities=9% Similarity=0.058 Sum_probs=60.5
Q ss_pred EEeeCchHHHHHHHhhc-ccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcc--cceeeCC---c----------eee
Q 012551 326 YVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRE--SCIFSDG---T----------YTK 389 (461)
Q Consensus 326 ~V~~RPgL~eFLe~Lsk-~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe--~C~~~~g---~----------yiK 389 (461)
.+.+|||+.+||+++.+ .+.++|.|++...|++++++.+.+...++..++.-. ....... . ..+
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~~ 147 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKPS 147 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHHH
Confidence 36899999999999996 599999999999999999999865443443333211 1011000 0 012
Q ss_pred eccccCCCCCcEEEEECCchhhccCCCcee
Q 012551 390 DLTVLGVDLAKVAIIDNSPQVFRLQVNNGI 419 (461)
Q Consensus 390 DLs~LgrDLskVVIIDDsp~~~~~qp~NgI 419 (461)
-++.++....++|.|-|+..-+......++
T Consensus 148 ~l~~~~~~~~~~i~iGDg~~D~~~a~~Ad~ 177 (214)
T TIGR03333 148 LIRKLSEPNDYHIVIGDSVTDVEAAKQSDL 177 (214)
T ss_pred HHHHHhhcCCcEEEEeCCHHHHHHHHhCCe
Confidence 223344566789999999876644333333
No 104
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=93.60 E-value=0.13 Score=52.15 Aligned_cols=105 Identities=18% Similarity=0.283 Sum_probs=68.2
Q ss_pred EEeeCchHHHHHHHhhc-ccEEEEEcCCChHHHHHHHHHHCC---CCCeeeeEEEcccceeeCC-------ceeee----
Q 012551 326 YVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDP---DGKLISRRVYRESCIFSDG-------TYTKD---- 390 (461)
Q Consensus 326 ~V~~RPgL~eFLe~Lsk-~YEIVIfTas~~~YA~~ILd~LDP---~~klf~~RLyRe~C~~~~g-------~yiKD---- 390 (461)
-+.+|||+.+||++|.+ ...++|+|+|...+++.+++.+.- ....++.++.-.......| .+.|.
T Consensus 119 ~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v~ 198 (277)
T TIGR01544 119 DVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDVA 198 (277)
T ss_pred CCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHHHH
Confidence 37889999999999975 499999999999999999998653 3345566664321111211 11221
Q ss_pred ---ccccC--CCCCcEEEEECCchhhcc-----CCCceeeeccccCCCCch
Q 012551 391 ---LTVLG--VDLAKVAIIDNSPQVFRL-----QVNNGIPIESWFDDPSDC 431 (461)
Q Consensus 391 ---Ls~Lg--rDLskVVIIDDsp~~~~~-----qp~NgIpI~s~~gd~~D~ 431 (461)
.+.++ .+.+++|+|-|+..-..+ +.+|.|.| .|..+.-+.
T Consensus 199 ~~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~g~~~~~~~l~i-gfln~~~e~ 248 (277)
T TIGR01544 199 LRNTEYFNQLKDRSNIILLGDSQGDLRMADGVANVEHILKI-GYLNDRVDE 248 (277)
T ss_pred HHHHHHhCccCCcceEEEECcChhhhhHhcCCCcccceEEE-EecccCHHH
Confidence 12235 678899999999964422 33455554 444444344
No 105
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=93.48 E-value=0.22 Score=48.30 Aligned_cols=58 Identities=24% Similarity=0.295 Sum_probs=40.4
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHHHCC
Q 012551 288 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDP 366 (461)
Q Consensus 288 K~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~LDP 366 (461)
.+.+++||||||+.... ...|...+-|+++. +...++|-|.-....+..+++.|..
T Consensus 3 ~kli~~DlDGTLl~~~~-----------------------~i~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l~~ 59 (272)
T PRK10530 3 YRVIALDLDGTLLTPKK-----------------------TILPESLEALARAREAGYKVIIVTGRHHVAIHPFYQALAL 59 (272)
T ss_pred ccEEEEeCCCceECCCC-----------------------ccCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCC
Confidence 35899999999996531 12445566677766 4477778777777777777777765
Q ss_pred CC
Q 012551 367 DG 368 (461)
Q Consensus 367 ~~ 368 (461)
..
T Consensus 60 ~~ 61 (272)
T PRK10530 60 DT 61 (272)
T ss_pred CC
Confidence 53
No 106
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=93.45 E-value=0.2 Score=48.64 Aligned_cols=54 Identities=19% Similarity=0.252 Sum_probs=43.2
Q ss_pred EEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCChHHHHHHHHHHCCC
Q 012551 290 TLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPD 367 (461)
Q Consensus 290 tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk-~YEIVIfTas~~~YA~~ILd~LDP~ 367 (461)
.+++||||||++... .-|...++|+++.+ ...+++.|..+...+..+++.+...
T Consensus 1 li~~DlDGTLl~~~~------------------------~~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~ 55 (225)
T TIGR02461 1 VIFTDLDGTLLPPGY------------------------EPGPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGVE 55 (225)
T ss_pred CEEEeCCCCCcCCCC------------------------CchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC
Confidence 368999999998421 13568899999985 5999999999988888888888754
No 107
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=93.28 E-value=0.31 Score=46.15 Aligned_cols=57 Identities=12% Similarity=0.222 Sum_probs=45.2
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHHHCCC
Q 012551 289 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPD 367 (461)
Q Consensus 289 ~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~LDP~ 367 (461)
+.+++||||||+.... ...|...+-|+++. +...++|-|.-....+.++++.+...
T Consensus 4 kli~~DlDGTLl~~~~-----------------------~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (230)
T PRK01158 4 KAIAIDIDGTITDKDR-----------------------RLSLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTS 60 (230)
T ss_pred eEEEEecCCCcCCCCC-----------------------ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCC
Confidence 5899999999996421 14567788888888 45899999999988889998888766
Q ss_pred C
Q 012551 368 G 368 (461)
Q Consensus 368 ~ 368 (461)
+
T Consensus 61 ~ 61 (230)
T PRK01158 61 G 61 (230)
T ss_pred C
Confidence 4
No 108
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=93.18 E-value=0.22 Score=48.38 Aligned_cols=56 Identities=25% Similarity=0.307 Sum_probs=43.2
Q ss_pred EEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHHHCCCC
Q 012551 290 TLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDG 368 (461)
Q Consensus 290 tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~LDP~~ 368 (461)
.+++||||||+.... ...|...+.|+++. +...++|-|......+..+++.+....
T Consensus 1 li~~DlDGTLl~~~~-----------------------~i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~~ 57 (256)
T TIGR00099 1 LIFIDLDGTLLNDDH-----------------------TISPSTKEALAKLREKGIKVVLATGRPYKEVKNILKELGLDT 57 (256)
T ss_pred CEEEeCCCCCCCCCC-----------------------ccCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCCC
Confidence 378999999997521 13566778888887 458999999999888888888887653
No 109
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=92.98 E-value=0.27 Score=46.50 Aligned_cols=54 Identities=24% Similarity=0.256 Sum_probs=43.0
Q ss_pred EEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCChHHHHHHHHHHCCC
Q 012551 291 LVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPD 367 (461)
Q Consensus 291 LVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk-~YEIVIfTas~~~YA~~ILd~LDP~ 367 (461)
+++||||||+..... ..|-..+.|+.+.+ ...++|.|......+..+++.+...
T Consensus 2 i~~DlDGTLL~~~~~-----------------------~~~~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 2 VFSDLDGTLLDSHSY-----------------------DWQPAAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred EEEeCCCCCcCCCCC-----------------------CcHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 789999999975310 12337788999885 5899999999999999999998754
No 110
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=92.85 E-value=0.29 Score=47.98 Aligned_cols=57 Identities=18% Similarity=0.201 Sum_probs=40.7
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHHHCCC
Q 012551 289 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPD 367 (461)
Q Consensus 289 ~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~LDP~ 367 (461)
+.+++||||||+.... ..-|...+-|+++. +...++|-|.-....+.++++.++..
T Consensus 3 kli~~DlDGTLl~~~~-----------------------~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 59 (272)
T PRK15126 3 RLAAFDMDGTLLMPDH-----------------------HLGEKTLSTLARLRERDITLTFATGRHVLEMQHILGALSLD 59 (272)
T ss_pred cEEEEeCCCcCcCCCC-----------------------cCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCC
Confidence 5899999999996531 13455666777776 44777777877777777777777665
Q ss_pred C
Q 012551 368 G 368 (461)
Q Consensus 368 ~ 368 (461)
+
T Consensus 60 ~ 60 (272)
T PRK15126 60 A 60 (272)
T ss_pred C
Confidence 4
No 111
>PRK10976 putative hydrolase; Provisional
Probab=92.80 E-value=0.3 Score=47.59 Aligned_cols=57 Identities=23% Similarity=0.246 Sum_probs=38.4
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHHHCCC
Q 012551 289 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPD 367 (461)
Q Consensus 289 ~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~LDP~ 367 (461)
+.+++||||||+.... ...|...+-|+++. +...++|-|.-....+.++++.|+..
T Consensus 3 kli~~DlDGTLl~~~~-----------------------~is~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 59 (266)
T PRK10976 3 QVVASDLDGTLLSPDH-----------------------TLSPYAKETLKLLTARGIHFVFATGRHHVDVGQIRDNLEIK 59 (266)
T ss_pred eEEEEeCCCCCcCCCC-----------------------cCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCC
Confidence 5899999999997631 12344556666665 44777777777777777777776654
Q ss_pred C
Q 012551 368 G 368 (461)
Q Consensus 368 ~ 368 (461)
.
T Consensus 60 ~ 60 (266)
T PRK10976 60 S 60 (266)
T ss_pred C
Confidence 3
No 112
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=91.79 E-value=0.45 Score=46.41 Aligned_cols=55 Identities=25% Similarity=0.236 Sum_probs=43.6
Q ss_pred EEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcc-cEEEEEcCCChHHHHHHHHHHCCC
Q 012551 290 TLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEM-FEVVIFTASQSIYAAQLLDILDPD 367 (461)
Q Consensus 290 tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk~-YEIVIfTas~~~YA~~ILd~LDP~ 367 (461)
.+++||||||++.... ..|...++|+.+.+. ..+++-|.-....+..+++.++..
T Consensus 1 li~~DlDGTll~~~~~-----------------------~~~~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~~ 56 (256)
T TIGR01486 1 WIFTDLDGTLLDPHGY-----------------------DWGPAKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGLE 56 (256)
T ss_pred CEEEcCCCCCcCCCCc-----------------------CchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 3789999999976310 134578999999855 899999999999999999998754
No 113
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=91.76 E-value=0.33 Score=45.28 Aligned_cols=54 Identities=31% Similarity=0.375 Sum_probs=43.4
Q ss_pred EEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcc-cEEEEEcCCChHHHHHHHHHHC
Q 012551 290 TLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEM-FEVVIFTASQSIYAAQLLDILD 365 (461)
Q Consensus 290 tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk~-YEIVIfTas~~~YA~~ILd~LD 365 (461)
.|++|+||||+.... ....|.+.+.|+++.+. ..++|-|......+..+++.++
T Consensus 1 li~~D~DgTL~~~~~----------------------~~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~~ 55 (204)
T TIGR01484 1 LLFFDLDGTLLDPNA----------------------HELSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQLP 55 (204)
T ss_pred CEEEeCcCCCcCCCC----------------------CcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhCC
Confidence 378999999996420 12358889999999865 8999999999999999998753
No 114
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=91.58 E-value=0.38 Score=45.52 Aligned_cols=96 Identities=20% Similarity=0.295 Sum_probs=63.2
Q ss_pred cCCCCceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhccc---EEEEEcCCC------
Q 012551 283 TQGRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMF---EVVIFTASQ------ 353 (461)
Q Consensus 283 ~~~~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk~Y---EIVIfTas~------ 353 (461)
....+-+.||||+|+||+.-.. -..-|.+.+.++++.+.| .|+|.|++.
T Consensus 36 Lk~~Gik~li~DkDNTL~~~~~----------------------~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~ 93 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTPPYE----------------------DEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDP 93 (168)
T ss_pred hhhcCceEEEEcCCCCCCCCCc----------------------CcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCc
Confidence 3456778999999999975321 124688889999999765 399999983
Q ss_pred -hHHHHHHHHHHCCCCCeeeeEEEcccceeeCCceeeeccccC-----CCCCcEEEEECCc
Q 012551 354 -SIYAAQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVLG-----VDLAKVAIIDNSP 408 (461)
Q Consensus 354 -~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~g~yiKDLs~Lg-----rDLskVVIIDDsp 408 (461)
..-|+.+-+.|.-. .+.|+--.. +.+-+-++.++ ..++++++|-|+.
T Consensus 94 ~~~~a~~~~~~lgIp--vl~h~~kKP------~~~~~i~~~~~~~~~~~~p~eiavIGDrl 146 (168)
T PF09419_consen 94 DGERAEALEKALGIP--VLRHRAKKP------GCFREILKYFKCQKVVTSPSEIAVIGDRL 146 (168)
T ss_pred cHHHHHHHHHhhCCc--EEEeCCCCC------ccHHHHHHHHhhccCCCCchhEEEEcchH
Confidence 67788888888743 233332122 22222222332 3588999999987
No 115
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=91.36 E-value=0.47 Score=43.80 Aligned_cols=61 Identities=15% Similarity=0.217 Sum_probs=41.9
Q ss_pred EEEeccccccccccc-ccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCChHHHH---HHHHHH
Q 012551 291 LVLDLDETLVHSTLE-YCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAA---QLLDIL 364 (461)
Q Consensus 291 LVLDLDeTLVhSs~~-~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk-~YEIVIfTas~~~YA~---~ILd~L 364 (461)
+++|+||||+.+... +.. ...... +..|++.++++++.+ .|.+++.|+.....+. +.+..+
T Consensus 2 VisDIDGTL~~sd~~~~~~----------~~~~~~---~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~ 67 (157)
T smart00775 2 VISDIDGTITKSDVLGHVV----------PIIGKD---WTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQI 67 (157)
T ss_pred EEEecCCCCcccccccccc----------cccccC---cCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHh
Confidence 789999999977411 100 000111 347999999999984 5899999998877775 566553
No 116
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=91.19 E-value=0.56 Score=44.17 Aligned_cols=53 Identities=17% Similarity=0.249 Sum_probs=39.9
Q ss_pred EEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCChHHHHHHHHHHCC
Q 012551 291 LVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDP 366 (461)
Q Consensus 291 LVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk-~YEIVIfTas~~~YA~~ILd~LDP 366 (461)
+++||||||+++.. ...|-..+-|+++.+ ...+++-|.-....+.++++.|..
T Consensus 1 i~~DlDGTLl~~~~-----------------------~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~ 54 (225)
T TIGR01482 1 IASDIDGTLTDPNR-----------------------AINESALEAIRKAESVGIPVVLVTGNSVQFARALAKLIGT 54 (225)
T ss_pred CeEeccCccCCCCc-----------------------ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCC
Confidence 58999999997531 134556677777774 488889998888888888888874
No 117
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=90.99 E-value=0.13 Score=49.92 Aligned_cols=89 Identities=10% Similarity=0.106 Sum_probs=61.2
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccceeeCC---ceeeeccccCCCCCcEEE
Q 012551 327 VKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDG---TYTKDLTVLGVDLAKVAI 403 (461)
Q Consensus 327 V~~RPgL~eFLe~Lsk~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~g---~yiKDLs~LgrDLskVVI 403 (461)
+..-||+.++|+.|.+.|.++|.|++... ++.++-. .+|+..+..+.....+. .|.+-++.+|.+++++|+
T Consensus 112 ~~~~~gv~~~L~~L~~~~~l~i~Tn~~~~-----~~~~gl~-~~fd~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~ 185 (238)
T PRK10748 112 IDVPQATHDTLKQLAKKWPLVAITNGNAQ-----PELFGLG-DYFEFVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEILH 185 (238)
T ss_pred CCCCccHHHHHHHHHcCCCEEEEECCCch-----HHHCCcH-HhhceeEecccCCcCCCcHHHHHHHHHHcCCChhHEEE
Confidence 44558999999999988999999998875 2444433 47877776554333332 455667788999999999
Q ss_pred EECCc-hhhccCCCceeee
Q 012551 404 IDNSP-QVFRLQVNNGIPI 421 (461)
Q Consensus 404 IDDsp-~~~~~qp~NgIpI 421 (461)
|-|++ .-......+|+..
T Consensus 186 VGD~~~~Di~~A~~aG~~~ 204 (238)
T PRK10748 186 VGDDLTTDVAGAIRCGMQA 204 (238)
T ss_pred EcCCcHHHHHHHHHCCCeE
Confidence 98884 4443333455543
No 118
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=90.94 E-value=0.24 Score=47.14 Aligned_cols=117 Identities=21% Similarity=0.285 Sum_probs=81.1
Q ss_pred CCccCCCCceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcc-cEEEEEcCCChHHHH
Q 012551 280 PKETQGRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEM-FEVVIFTASQSIYAA 358 (461)
Q Consensus 280 P~~~~~~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk~-YEIVIfTas~~~YA~ 358 (461)
|.....++-+.+|+|||+|||-= ... ..-|-+.+-+..+... -.++|.++..+.-+.
T Consensus 20 ~~~L~~~Gikgvi~DlDNTLv~w--d~~--------------------~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~ 77 (175)
T COG2179 20 PDILKAHGIKGVILDLDNTLVPW--DNP--------------------DATPELRAWLAELKEAGIKVVVVSNNKESRVA 77 (175)
T ss_pred HHHHHHcCCcEEEEeccCceecc--cCC--------------------CCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHH
Confidence 34445677889999999999843 211 1258889999999855 999999999999999
Q ss_pred HHHHHHCCCCCeeeeEEEcccceeeCCceeeeccccCCCCCcEEEEECCch--hhccCCC--ceeeecccc
Q 012551 359 QLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQ--VFRLQVN--NGIPIESWF 425 (461)
Q Consensus 359 ~ILd~LDP~~klf~~RLyRe~C~~~~g~yiKDLs~LgrDLskVVIIDDsp~--~~~~qp~--NgIpI~s~~ 425 (461)
.++..||-.. + ++-- ......+-|-|..++-+.++|+.|-|.-. +...+.. -.|.|+|-.
T Consensus 78 ~~~~~l~v~f--i----~~A~-KP~~~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~~tIlV~Pl~ 141 (175)
T COG2179 78 RAAEKLGVPF--I----YRAK-KPFGRAFRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGMRTILVEPLV 141 (175)
T ss_pred hhhhhcCCce--e----eccc-CccHHHHHHHHHHcCCChhHEEEEcchhhhhhhcccccCcEEEEEEEec
Confidence 9999998753 1 1100 00111345777888999999999999873 4444432 246666654
No 119
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=90.84 E-value=0.64 Score=41.89 Aligned_cols=49 Identities=16% Similarity=0.331 Sum_probs=41.4
Q ss_pred EeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEE
Q 012551 327 VKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVY 376 (461)
Q Consensus 327 V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLy 376 (461)
+..|||+.++|+++. +.+.++|.|++.+.|++.+++.+.... +|..++.
T Consensus 72 ~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~~-~~~~~~~ 121 (177)
T TIGR01488 72 VALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDD-VFANRLE 121 (177)
T ss_pred CCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCch-heeeeEE
Confidence 567999999999997 459999999999999999999987653 5655554
No 120
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=90.80 E-value=0.34 Score=48.11 Aligned_cols=48 Identities=19% Similarity=0.346 Sum_probs=40.4
Q ss_pred EeeCchHHHHHHHhh---cccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEE
Q 012551 327 VKQRPHLKTFLERVA---EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRV 375 (461)
Q Consensus 327 V~~RPgL~eFLe~Ls---k~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RL 375 (461)
+...||..+|+++++ ..++++|-|-|..-|-+.||+.-+-.+ +|+.++
T Consensus 70 ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~-~f~~I~ 120 (234)
T PF06888_consen 70 IPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRD-CFSEIF 120 (234)
T ss_pred CCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCcc-ccceEE
Confidence 788999999999995 379999999999999999999977654 444433
No 121
>PRK10444 UMP phosphatase; Provisional
Probab=90.72 E-value=0.4 Score=47.46 Aligned_cols=55 Identities=22% Similarity=0.361 Sum_probs=43.5
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCChHHHHHHHHHHCCC
Q 012551 289 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPD 367 (461)
Q Consensus 289 ~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk-~YEIVIfTas~~~YA~~ILd~LDP~ 367 (461)
+.+++||||||++.. ..=|++.+||+++.+ ...+++.|.....-+..+++.|.--
T Consensus 2 ~~v~~DlDGtL~~~~------------------------~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~ 57 (248)
T PRK10444 2 KNVICDIDGVLMHDN------------------------VAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATA 57 (248)
T ss_pred cEEEEeCCCceEeCC------------------------eeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHc
Confidence 378999999998763 125899999999985 6899999999887777777776443
No 122
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.71 E-value=0.29 Score=53.32 Aligned_cols=128 Identities=18% Similarity=0.235 Sum_probs=70.4
Q ss_pred CCCceEEEEecccccccccccccCCCCceEEEEecc-eeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHH
Q 012551 285 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNM-KEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLD 362 (461)
Q Consensus 285 ~~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~-~~~~~~V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd 362 (461)
.+.++.||||||+||.--. -..+=.-.+.... .....| --+.+|...+. +.+=+.|.|-....-|..+..
T Consensus 219 g~~kK~LVLDLDNTLWGGV----IGedGv~GI~Ls~~~~G~~f----k~fQ~~Ik~l~kqGVlLav~SKN~~~da~evF~ 290 (574)
T COG3882 219 GKSKKALVLDLDNTLWGGV----IGEDGVDGIRLSNSAEGEAF----KTFQNFIKGLKKQGVLLAVCSKNTEKDAKEVFR 290 (574)
T ss_pred CcccceEEEecCCcccccc----cccccccceeecCCCCchhH----HHHHHHHHHHHhccEEEEEecCCchhhHHHHHh
Confidence 4567899999999994332 2111111111111 000000 02445555565 557888889888888888765
Q ss_pred HHCCCCCeeeeEEEccc-----ceeeC-C-ceeeeccccCCCCCcEEEEECCchhhccCCCce-eeeccccC
Q 012551 363 ILDPDGKLISRRVYRES-----CIFSD-G-TYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNG-IPIESWFD 426 (461)
Q Consensus 363 ~LDP~~klf~~RLyRe~-----C~~~~-g-~yiKDLs~LgrDLskVVIIDDsp~~~~~qp~Ng-IpI~s~~g 426 (461)
+- |+ ..|--++ |.+.+ + +..|-.++|+-.+.-.|+|||.|.....-..++ |.+..+-.
T Consensus 291 kh-p~-----MiLkeedfa~~~iNW~~K~eNirkIAkklNlg~dSmvFiDD~p~ErE~vk~~~~v~Vi~~~~ 356 (574)
T COG3882 291 KH-PD-----MILKEEDFAVFQINWDPKAENIRKIAKKLNLGLDSMVFIDDNPAERELVKRELPVSVIEFPE 356 (574)
T ss_pred hC-CC-----eEeeHhhhhhheecCCcchhhHHHHHHHhCCCccceEEecCCHHHHHHHHhcCceeeccCCC
Confidence 42 21 1121121 22221 1 344666678899999999999997664432222 55555543
No 123
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=90.53 E-value=0.56 Score=46.75 Aligned_cols=60 Identities=15% Similarity=0.071 Sum_probs=41.8
Q ss_pred CceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc--ccEEEEEcCCChHHHHHHHHHH
Q 012551 287 KSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE--MFEVVIFTASQSIYAAQLLDIL 364 (461)
Q Consensus 287 kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk--~YEIVIfTas~~~YA~~ILd~L 364 (461)
++..|++|+||||+.....+.. ...-|.+.+-|+.|++ ...++|.|.-...-+..+++.+
T Consensus 13 ~~~li~~D~DGTLl~~~~~p~~------------------~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~~~ 74 (266)
T PRK10187 13 ANYAWFFDLDGTLAEIKPHPDQ------------------VVVPDNILQGLQLLATANDGALALISGRSMVELDALAKPY 74 (266)
T ss_pred CCEEEEEecCCCCCCCCCCccc------------------ccCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcCcc
Confidence 3679999999999975422110 1234778888888875 4678888888877777766544
No 124
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=90.43 E-value=0.46 Score=48.55 Aligned_cols=53 Identities=17% Similarity=0.265 Sum_probs=40.8
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-----ccEEEEEcCCC----hHHHHH
Q 012551 289 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-----MFEVVIFTASQ----SIYAAQ 359 (461)
Q Consensus 289 ~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk-----~YEIVIfTas~----~~YA~~ 359 (461)
+.++||+||||++.. ..-|++.+||+.+.. ...++++|+.. +.+++.
T Consensus 1 ~~~ifD~DGvL~~g~------------------------~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~ 56 (321)
T TIGR01456 1 FGFAFDIDGVLFRGK------------------------KPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEE 56 (321)
T ss_pred CEEEEeCcCceECCc------------------------cccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHH
Confidence 368999999998863 126899999999986 78889999775 556777
Q ss_pred HHHHHC
Q 012551 360 LLDILD 365 (461)
Q Consensus 360 ILd~LD 365 (461)
+.+.+.
T Consensus 57 l~~~lG 62 (321)
T TIGR01456 57 ISSLLG 62 (321)
T ss_pred HHHHcC
Confidence 655543
No 125
>PTZ00174 phosphomannomutase; Provisional
Probab=90.22 E-value=0.73 Score=45.06 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=36.8
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCChHHHHHHHH
Q 012551 288 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLD 362 (461)
Q Consensus 288 K~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk-~YEIVIfTas~~~YA~~ILd 362 (461)
.+.+++||||||+++.. ...|...+-|+++.+ ...++|-|.....-+.+.+.
T Consensus 5 ~klia~DlDGTLL~~~~-----------------------~is~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l~ 57 (247)
T PTZ00174 5 KTILLFDVDGTLTKPRN-----------------------PITQEMKDTLAKLKSKGFKIGVVGGSDYPKIKEQLG 57 (247)
T ss_pred CeEEEEECcCCCcCCCC-----------------------CCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHh
Confidence 46899999999998642 135667778888874 48888888866654444443
No 126
>PLN02645 phosphoglycolate phosphatase
Probab=90.21 E-value=0.39 Score=48.78 Aligned_cols=53 Identities=15% Similarity=0.100 Sum_probs=40.4
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHHH
Q 012551 288 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDIL 364 (461)
Q Consensus 288 K~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~L 364 (461)
-..++||+||||++.. .+ =||+.++|+++. +...+++.|+....-...+++.|
T Consensus 28 ~~~~~~D~DGtl~~~~----------------------~~--~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l 81 (311)
T PLN02645 28 VETFIFDCDGVIWKGD----------------------KL--IEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKF 81 (311)
T ss_pred CCEEEEeCcCCeEeCC----------------------cc--CcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHH
Confidence 4589999999997642 01 289999999998 56999999998866555555554
No 127
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=89.43 E-value=0.96 Score=46.63 Aligned_cols=57 Identities=12% Similarity=0.155 Sum_probs=43.9
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHHHCCC
Q 012551 289 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPD 367 (461)
Q Consensus 289 ~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~LDP~ 367 (461)
+.+++||||||+.... | .-+-+.+-|+++. +...|++.|+-+..-...+.+.|...
T Consensus 2 KLIftDLDGTLLd~~~---------------------~--~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~ 58 (302)
T PRK12702 2 RLVLSSLDGSLLDLEF---------------------N--SYGAARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLE 58 (302)
T ss_pred cEEEEeCCCCCcCCCC---------------------c--CCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCC
Confidence 5789999999997531 1 1234677788888 45899999999888888888888765
Q ss_pred C
Q 012551 368 G 368 (461)
Q Consensus 368 ~ 368 (461)
.
T Consensus 59 ~ 59 (302)
T PRK12702 59 H 59 (302)
T ss_pred C
Confidence 4
No 128
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=89.39 E-value=0.53 Score=46.55 Aligned_cols=48 Identities=17% Similarity=0.132 Sum_probs=35.2
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCChHH
Q 012551 289 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQSIY 356 (461)
Q Consensus 289 ~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk-~YEIVIfTas~~~Y 356 (461)
+.+++||||||++..... =..=|++.++|+++.+ ...+++.|.....-
T Consensus 2 k~i~~D~DGtl~~~~~~~--------------------~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~ 50 (257)
T TIGR01458 2 KGVLLDISGVLYISDAKS--------------------GVAVPGSQEAVKRLRGASVKVRFVTNTTKES 50 (257)
T ss_pred CEEEEeCCCeEEeCCCcc--------------------cCcCCCHHHHHHHHHHCCCeEEEEECCCCCC
Confidence 378999999998753100 0025899999999995 59999999766553
No 129
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=89.18 E-value=0.66 Score=46.17 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=32.9
Q ss_pred eEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCCh
Q 012551 289 VTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQS 354 (461)
Q Consensus 289 ~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk-~YEIVIfTas~~ 354 (461)
..+++|+||||++.. ..-||+.++|+++.+ ...+++.|++..
T Consensus 3 ~~~~~D~DGtl~~~~------------------------~~~~ga~e~l~~L~~~g~~~~~~Tnns~ 45 (279)
T TIGR01452 3 QGFIFDCDGVLWLGE------------------------RVVPGAPELLDRLARAGKAALFVTNNST 45 (279)
T ss_pred cEEEEeCCCceEcCC------------------------eeCcCHHHHHHHHHHCCCeEEEEeCCCC
Confidence 478999999997642 124889999999984 589999998653
No 130
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=88.91 E-value=0.27 Score=48.98 Aligned_cols=100 Identities=18% Similarity=0.211 Sum_probs=67.2
Q ss_pred EEeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcc---------------cceeeCCc-ee
Q 012551 326 YVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRE---------------SCIFSDGT-YT 388 (461)
Q Consensus 326 ~V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe---------------~C~~~~g~-yi 388 (461)
+...=|.+-++++.+. +..-++..|+....+...-++.|---|--|+...+++ .-.+.+|. +.
T Consensus 79 ~~lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft 158 (252)
T PF11019_consen 79 MELIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFT 158 (252)
T ss_pred eEEcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEe
Confidence 3556789999999999 6699999999999999988888755443344333111 11123331 11
Q ss_pred ----------eeccccCCCCCcEEEEECCchhh----ccCCCceeeecccc
Q 012551 389 ----------KDLTVLGVDLAKVAIIDNSPQVF----RLQVNNGIPIESWF 425 (461)
Q Consensus 389 ----------KDLs~LgrDLskVVIIDDsp~~~----~~qp~NgIpI~s~~ 425 (461)
.=|..+|+.++++|+|||+.... ..-...+|....++
T Consensus 159 ~~~~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~ 209 (252)
T PF11019_consen 159 GGQDKGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFH 209 (252)
T ss_pred CCCccHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEE
Confidence 22345699999999999999765 12223677777765
No 131
>PLN02423 phosphomannomutase
Probab=88.49 E-value=1 Score=44.21 Aligned_cols=55 Identities=18% Similarity=0.367 Sum_probs=36.7
Q ss_pred CCceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcCCChHHHHHHHHHHC
Q 012551 286 RKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILD 365 (461)
Q Consensus 286 ~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk~YEIVIfTas~~~YA~~ILd~LD 365 (461)
+.+..+++||||||+.... .+-|...+-|+++.+...+++.|... | ..+.+.+.
T Consensus 5 ~~~~i~~~D~DGTLl~~~~-----------------------~i~~~~~~ai~~l~~~i~fviaTGR~--~-~~~~~~~~ 58 (245)
T PLN02423 5 KPGVIALFDVDGTLTAPRK-----------------------EATPEMLEFMKELRKVVTVGVVGGSD--L-SKISEQLG 58 (245)
T ss_pred ccceEEEEeccCCCcCCCC-----------------------cCCHHHHHHHHHHHhCCEEEEECCcC--H-HHHHHHhc
Confidence 3455667999999997631 12467788899998777777777652 2 34555555
Q ss_pred C
Q 012551 366 P 366 (461)
Q Consensus 366 P 366 (461)
+
T Consensus 59 ~ 59 (245)
T PLN02423 59 K 59 (245)
T ss_pred c
Confidence 4
No 132
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=87.68 E-value=0.92 Score=42.38 Aligned_cols=81 Identities=20% Similarity=0.342 Sum_probs=51.3
Q ss_pred EeeCchHHHHHHHhhcccEEEEEcCCChHHH------HHHHHH---HCCCCCeeeeEEEcccceeeCCceeeeccccCCC
Q 012551 327 VKQRPHLKTFLERVAEMFEVVIFTASQSIYA------AQLLDI---LDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVD 397 (461)
Q Consensus 327 V~~RPgL~eFLe~Lsk~YEIVIfTas~~~YA------~~ILd~---LDP~~klf~~RLyRe~C~~~~g~yiKDLs~LgrD 397 (461)
...-||+.+-+++|-++|+|+|-||++..+- +.+.+. |+++ +.++ | .. |++-+
T Consensus 67 L~V~p~aq~v~keLt~~y~vYivtaamdhp~s~~dK~eWl~E~FPFi~~q-----n~vf---C--gn----Knivk---- 128 (180)
T COG4502 67 LGVQPFAQTVLKELTSIYNVYIVTAAMDHPKSCEDKGEWLKEKFPFISYQ-----NIVF---C--GN----KNIVK---- 128 (180)
T ss_pred cCccccHHHHHHHHHhhheEEEEEeccCCchhHHHHHHHHHHHCCCCChh-----hEEE---e--cC----CCeEE----
Confidence 5678999999999999999999999954332 223332 2222 2222 1 11 22211
Q ss_pred CCcEEEEECCchhhccCCCceeeeccccCC
Q 012551 398 LAKVAIIDNSPQVFRLQVNNGIPIESWFDD 427 (461)
Q Consensus 398 LskVVIIDDsp~~~~~qp~NgIpI~s~~gd 427 (461)
-=++|||.|........|-|....-+.-
T Consensus 129 --aDilIDDnp~nLE~F~G~kIlFdA~HN~ 156 (180)
T COG4502 129 --ADILIDDNPLNLENFKGNKILFDAHHNK 156 (180)
T ss_pred --eeEEecCCchhhhhccCceEEEeccccc
Confidence 1368999998877777777766655543
No 133
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=87.37 E-value=1.1 Score=43.68 Aligned_cols=60 Identities=25% Similarity=0.081 Sum_probs=39.6
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhccc-EEEEEcCCChHHHHHHHHHHCC
Q 012551 288 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMF-EVVIFTASQSIYAAQLLDILDP 366 (461)
Q Consensus 288 K~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk~Y-EIVIfTas~~~YA~~ILd~LDP 366 (461)
++.++.||||||+.+.... -...|.+.+.++++.+.. .+|+-|.-+..-+.++++.+.+
T Consensus 1 ~~li~tDlDGTLl~~~~~~--------------------~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~ 60 (249)
T TIGR01485 1 RLLLVSDLDNTLVDHTDGD--------------------NQALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPL 60 (249)
T ss_pred CeEEEEcCCCcCcCCCCCC--------------------hHHHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCC
Confidence 4688999999999632100 123578888888877655 6666666666666677666554
Q ss_pred C
Q 012551 367 D 367 (461)
Q Consensus 367 ~ 367 (461)
.
T Consensus 61 ~ 61 (249)
T TIGR01485 61 L 61 (249)
T ss_pred C
Confidence 3
No 134
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=87.33 E-value=0.71 Score=42.80 Aligned_cols=49 Identities=22% Similarity=0.269 Sum_probs=41.5
Q ss_pred EeeCchHHHHHHHhhc-ccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEE
Q 012551 327 VKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVY 376 (461)
Q Consensus 327 V~~RPgL~eFLe~Lsk-~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLy 376 (461)
...+|++.++|+++.+ .+.++|-|++...+++.+++.+.-.. +|..++.
T Consensus 86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~-~~~~~l~ 135 (202)
T TIGR01490 86 SILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDN-AIGTRLE 135 (202)
T ss_pred HhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcc-eEecceE
Confidence 3579999999999975 69999999999999999999998765 6665444
No 135
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=86.79 E-value=2.2 Score=48.61 Aligned_cols=60 Identities=18% Similarity=0.132 Sum_probs=45.7
Q ss_pred CCCceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHH
Q 012551 285 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDI 363 (461)
Q Consensus 285 ~~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~ 363 (461)
..+++.+++||||||++... ++. +...+-|+.+. +...+++.|.-....+..+++.
T Consensus 413 ~~~~KLIfsDLDGTLLd~d~---------------------~i~--~~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~~~ 469 (694)
T PRK14502 413 GQFKKIVYTDLDGTLLNPLT---------------------YSY--STALDALRLLKDKELPLVFCSAKTMGEQDLYRNE 469 (694)
T ss_pred CceeeEEEEECcCCCcCCCC---------------------ccC--HHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHH
Confidence 45678999999999997631 111 23456677777 4589999999999999999999
Q ss_pred HCCC
Q 012551 364 LDPD 367 (461)
Q Consensus 364 LDP~ 367 (461)
|+..
T Consensus 470 Lgl~ 473 (694)
T PRK14502 470 LGIK 473 (694)
T ss_pred cCCC
Confidence 8764
No 136
>PLN02887 hydrolase family protein
Probab=86.19 E-value=1.7 Score=48.44 Aligned_cols=58 Identities=22% Similarity=0.209 Sum_probs=45.6
Q ss_pred CceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHHHC
Q 012551 287 KSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILD 365 (461)
Q Consensus 287 kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~LD 365 (461)
+.+.+++||||||+.... ..-|...+-|+++. +...++|-|.-...-+..+++.++
T Consensus 307 ~iKLIa~DLDGTLLn~d~-----------------------~Is~~t~eAI~kl~ekGi~~vIATGR~~~~i~~~l~~L~ 363 (580)
T PLN02887 307 KFSYIFCDMDGTLLNSKS-----------------------QISETNAKALKEALSRGVKVVIATGKARPAVIDILKMVD 363 (580)
T ss_pred CccEEEEeCCCCCCCCCC-----------------------ccCHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhC
Confidence 457899999999997631 13456677788887 569999999999888889999887
Q ss_pred CC
Q 012551 366 PD 367 (461)
Q Consensus 366 P~ 367 (461)
..
T Consensus 364 l~ 365 (580)
T PLN02887 364 LA 365 (580)
T ss_pred cc
Confidence 54
No 137
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=85.40 E-value=1.6 Score=42.97 Aligned_cols=40 Identities=20% Similarity=0.355 Sum_probs=30.8
Q ss_pred EEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCC
Q 012551 290 TLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQ 353 (461)
Q Consensus 290 tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Ls-k~YEIVIfTas~ 353 (461)
.+++|+||||++... .=|++.++|+++. +...+++.|.+.
T Consensus 3 ~~~~D~DGtl~~~~~------------------------~i~~a~~~l~~l~~~g~~~~~~Tnn~ 43 (249)
T TIGR01457 3 GYLIDLDGTMYKGKE------------------------RIPEAETFVHELQKRDIPYLFVTNNS 43 (249)
T ss_pred EEEEeCCCceEcCCe------------------------eCcCHHHHHHHHHHCCCeEEEEeCCC
Confidence 789999999986521 1368899999998 458888888633
No 138
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=84.59 E-value=1 Score=45.34 Aligned_cols=75 Identities=21% Similarity=0.238 Sum_probs=42.6
Q ss_pred CCCceEEEEeccccccccccc----ccCCCCceEEEEecceeeeE-----EEeeCchHHHHHHHhhcccEEEEE-cCCCh
Q 012551 285 GRKSVTLVLDLDETLVHSTLE----YCDDADFTFTVFFNMKEHTV-----YVKQRPHLKTFLERVAEMFEVVIF-TASQS 354 (461)
Q Consensus 285 ~~kK~tLVLDLDeTLVhSs~~----~~~~~df~~~i~~~~~~~~~-----~V~~RPgL~eFLe~Lsk~YEIVIf-Tas~~ 354 (461)
..|++.+|||||||++.-+-- -..+..|+. ..-.. --+.=||+.+||+++-++--.|.| |.-.+
T Consensus 76 k~K~~aVvlDlDETvLdNs~Yqgy~v~nnk~f~p------e~Wd~wV~a~~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~ 149 (274)
T COG2503 76 KGKKKAVVLDLDETVLDNSAYQGYQVLNNKGFTP------ETWDKWVQAKKSKAVPGAVEFLNYVNSNGGKIFYISNRDQ 149 (274)
T ss_pred cCCCceEEEecchHhhcCccccchhhhcCCCCCc------cchHHHHhhcccccCccHHHHHHHHHhcCcEEEEEeccch
Confidence 456669999999999986521 111111210 00011 145569999999999977655555 44443
Q ss_pred HH-HHHHHHHHC
Q 012551 355 IY-AAQLLDILD 365 (461)
Q Consensus 355 ~Y-A~~ILd~LD 365 (461)
+- ...-++-|-
T Consensus 150 ~~~~~~T~~nLk 161 (274)
T COG2503 150 ENEKDGTIENLK 161 (274)
T ss_pred hcccchhHHHHH
Confidence 33 333444443
No 139
>PLN03017 trehalose-phosphatase
Probab=84.09 E-value=1.7 Score=45.98 Aligned_cols=60 Identities=17% Similarity=0.165 Sum_probs=44.6
Q ss_pred CCCceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcCCChHHHHHHHH
Q 012551 285 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLD 362 (461)
Q Consensus 285 ~~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk~YEIVIfTas~~~YA~~ILd 362 (461)
..++..|+||+||||+--...+ -....-|.+.+-|++|++.+.++|-|--...-+..+++
T Consensus 108 ~~k~~llflD~DGTL~Piv~~p------------------~~a~i~~~~~~aL~~La~~~~vaIvSGR~~~~l~~~~~ 167 (366)
T PLN03017 108 RGKQIVMFLDYDGTLSPIVDDP------------------DKAFMSSKMRRTVKKLAKCFPTAIVTGRCIDKVYNFVK 167 (366)
T ss_pred cCCCeEEEEecCCcCcCCcCCc------------------ccccCCHHHHHHHHHHhcCCcEEEEeCCCHHHHHHhhc
Confidence 4567899999999998332110 01234588899999999999999999988887777743
No 140
>PLN02151 trehalose-phosphatase
Probab=83.42 E-value=2.1 Score=45.04 Aligned_cols=60 Identities=15% Similarity=0.205 Sum_probs=45.3
Q ss_pred CCCceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcCCChHHHHHHHH
Q 012551 285 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLD 362 (461)
Q Consensus 285 ~~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk~YEIVIfTas~~~YA~~ILd 362 (461)
..++..|+||+||||+-.... .-.+..-|.+.+-|+.|++.+.++|-|--...-.+.++.
T Consensus 95 ~~~~~ll~lDyDGTL~PIv~~------------------P~~A~~~~~~~~aL~~La~~~~vaIvSGR~~~~l~~~~~ 154 (354)
T PLN02151 95 EGKQIVMFLDYDGTLSPIVDD------------------PDRAFMSKKMRNTVRKLAKCFPTAIVSGRCREKVSSFVK 154 (354)
T ss_pred cCCceEEEEecCccCCCCCCC------------------cccccCCHHHHHHHHHHhcCCCEEEEECCCHHHHHHHcC
Confidence 456789999999999843211 112446789999999999889999999888777777664
No 141
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=83.25 E-value=2.9 Score=40.78 Aligned_cols=42 Identities=17% Similarity=0.335 Sum_probs=37.9
Q ss_pred EeeCchHHHHHHHhhcc-cEEEEEcCCChHHHHHHHHHHCCCC
Q 012551 327 VKQRPHLKTFLERVAEM-FEVVIFTASQSIYAAQLLDILDPDG 368 (461)
Q Consensus 327 V~~RPgL~eFLe~Lsk~-YEIVIfTas~~~YA~~ILd~LDP~~ 368 (461)
++.|||.++|.+++.++ -.++|-++|+..|..+++..+--+.
T Consensus 72 i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke 114 (220)
T COG4359 72 IKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKE 114 (220)
T ss_pred cccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhcccc
Confidence 89999999999999965 8999999999999999999876543
No 142
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=82.97 E-value=1.7 Score=42.34 Aligned_cols=50 Identities=26% Similarity=0.323 Sum_probs=36.8
Q ss_pred EEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc-ccEEEEEcCCC----hHHHHHHHHHH
Q 012551 291 LVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE-MFEVVIFTASQ----SIYAAQLLDIL 364 (461)
Q Consensus 291 LVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk-~YEIVIfTas~----~~YA~~ILd~L 364 (461)
++||+||||+.... .=|++.++|+.+.+ .+.+++-|++. ..+++.+.+.+
T Consensus 1 ~lfD~DGvL~~~~~------------------------~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~ 55 (236)
T TIGR01460 1 FLFDIDGVLWLGHK------------------------PIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLL 55 (236)
T ss_pred CEEeCcCccCcCCc------------------------cCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 47999999987631 13689999999985 48999998555 45666666643
No 143
>PLN02580 trehalose-phosphatase
Probab=82.81 E-value=2.3 Score=45.27 Aligned_cols=61 Identities=20% Similarity=0.243 Sum_probs=48.0
Q ss_pred CCCceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcCCChHHHHHHHHH
Q 012551 285 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDI 363 (461)
Q Consensus 285 ~~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk~YEIVIfTas~~~YA~~ILd~ 363 (461)
..++..|+||.||||+-.... .--+..=|.+.+-|+.|++.+.++|-|--...-.+.++..
T Consensus 116 ~~k~~~LfLDyDGTLaPIv~~------------------Pd~A~~s~~~~~aL~~La~~~~VAIVSGR~~~~L~~~l~~ 176 (384)
T PLN02580 116 KGKKIALFLDYDGTLSPIVDD------------------PDRALMSDAMRSAVKNVAKYFPTAIISGRSRDKVYELVGL 176 (384)
T ss_pred hcCCeEEEEecCCccCCCCCC------------------cccccCCHHHHHHHHHHhhCCCEEEEeCCCHHHHHHHhCC
Confidence 456789999999999754321 1234567899999999999999999999988888877753
No 144
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=81.99 E-value=4 Score=40.50 Aligned_cols=93 Identities=15% Similarity=0.118 Sum_probs=53.9
Q ss_pred CCCceEEEEeccccccccccccc----CCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCChHHHHH
Q 012551 285 GRKSVTLVLDLDETLVHSTLEYC----DDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQ 359 (461)
Q Consensus 285 ~~kK~tLVLDLDeTLVhSs~~~~----~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ 359 (461)
..+|..+|||+|||++....-.. ....|.-. .+..--..---..-|++.+|++++. +.++|++.|.-.....+.
T Consensus 74 ~dg~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~-~~~~wv~~~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~ 152 (229)
T TIGR01675 74 GDGMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPT-AFWLWLGKGAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNA 152 (229)
T ss_pred CCCCcEEEEccccccccCHHHHHHhccCCCcCCHH-HHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHH
Confidence 35788999999999998652110 00001000 0000000011356799999999997 569999999998877555
Q ss_pred HHHHHCCCCCe-eeeEEEcc
Q 012551 360 LLDILDPDGKL-ISRRVYRE 378 (461)
Q Consensus 360 ILd~LDP~~kl-f~~RLyRe 378 (461)
.++.|.-.|-. +.+.+.|.
T Consensus 153 T~~nL~~~G~~~~~~LiLR~ 172 (229)
T TIGR01675 153 TLDNLINAGFTGWKHLILRG 172 (229)
T ss_pred HHHHHHHcCCCCcCeeeecC
Confidence 55555444411 24444564
No 145
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=81.68 E-value=0.71 Score=45.94 Aligned_cols=40 Identities=18% Similarity=0.458 Sum_probs=35.1
Q ss_pred EeeCchHHHHHHHhhcc--cEEEEEcCCChHHHHHHHHHHCC
Q 012551 327 VKQRPHLKTFLERVAEM--FEVVIFTASQSIYAAQLLDILDP 366 (461)
Q Consensus 327 V~~RPgL~eFLe~Lsk~--YEIVIfTas~~~YA~~ILd~LDP 366 (461)
+-.-||+-+.++.+++. ||++|-+-+..-+.+.+|++.+-
T Consensus 83 iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~ 124 (256)
T KOG3120|consen 83 IPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGI 124 (256)
T ss_pred CCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccH
Confidence 56679999999999854 89999999999999999999654
No 146
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=81.11 E-value=1.6 Score=42.68 Aligned_cols=48 Identities=19% Similarity=0.173 Sum_probs=32.7
Q ss_pred CceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEE--EEcCC
Q 012551 287 KSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVV--IFTAS 352 (461)
Q Consensus 287 kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk~YEIV--IfTas 352 (461)
|+..|+||+||||+-....+ -.++.=|++.+.|+.|++....+ |-|.-
T Consensus 2 ~~~~l~lD~DGTL~~~~~~p------------------~~~~~~~~~~~~L~~L~~~~~~~v~ivSGR 51 (244)
T TIGR00685 2 RKRAFFFDYDGTLSEIVPDP------------------DAAVVSDRLLTILQKLAARPHNAIWIISGR 51 (244)
T ss_pred CcEEEEEecCccccCCcCCC------------------cccCCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence 56789999999998542111 01234688999999999876544 44544
No 147
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=80.62 E-value=2.7 Score=42.66 Aligned_cols=53 Identities=19% Similarity=0.217 Sum_probs=39.7
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcc-cEEEEEcCCChHHHHHHHHHH
Q 012551 288 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEM-FEVVIFTASQSIYAAQLLDIL 364 (461)
Q Consensus 288 K~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk~-YEIVIfTas~~~YA~~ILd~L 364 (461)
..++++||||||++-. ..=||+.+||+++.+. -.+++-|++..+-.+.+..+|
T Consensus 8 y~~~l~DlDGvl~~G~------------------------~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L 61 (269)
T COG0647 8 YDGFLFDLDGVLYRGN------------------------EAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARL 61 (269)
T ss_pred cCEEEEcCcCceEeCC------------------------ccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 4578999999998653 1249999999999965 888888988865555444443
No 148
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=80.41 E-value=1.6 Score=41.00 Aligned_cols=79 Identities=25% Similarity=0.368 Sum_probs=42.6
Q ss_pred EeeCchHHHHHHHhhcc-cEEEEEcCCChH-H---HH---HHHHHHCCCCCeeeeEEEcccceeeCCceeeeccccCCCC
Q 012551 327 VKQRPHLKTFLERVAEM-FEVVIFTASQSI-Y---AA---QLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDL 398 (461)
Q Consensus 327 V~~RPgL~eFLe~Lsk~-YEIVIfTas~~~-Y---A~---~ILd~LDP~~klf~~RLyRe~C~~~~g~yiKDLs~LgrDL 398 (461)
...=||+.+.|++|.+. +++++-|+.... + +. +.|+..-| +......++..+ |. .++.|
T Consensus 72 l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~-~i~~~~~~~~~~---------K~--~v~~D- 138 (191)
T PF06941_consen 72 LPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFP-FIPYDNLIFTGD---------KT--LVGGD- 138 (191)
T ss_dssp --B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHT-HHHHCCEEEESS---------GG--GC--S-
T ss_pred CCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcC-CCchheEEEecC---------CC--eEecc-
Confidence 56679999999999977 588877777654 1 22 23333212 111222222111 22 34444
Q ss_pred CcEEEEECCchhhccCCCceeee
Q 012551 399 AKVAIIDNSPQVFRLQVNNGIPI 421 (461)
Q Consensus 399 skVVIIDDsp~~~~~qp~NgIpI 421 (461)
|+|||+|.....-...|+++
T Consensus 139 ---vlIDD~~~n~~~~~~~g~~~ 158 (191)
T PF06941_consen 139 ---VLIDDRPHNLEQFANAGIPV 158 (191)
T ss_dssp ---EEEESSSHHHSS-SSESSEE
T ss_pred ---EEecCChHHHHhccCCCceE
Confidence 79999999887666667444
No 149
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=79.52 E-value=3.6 Score=41.74 Aligned_cols=61 Identities=20% Similarity=0.151 Sum_probs=45.8
Q ss_pred CCCCceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccE--EEEEcCCChHHHHHHH
Q 012551 284 QGRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFE--VVIFTASQSIYAAQLL 361 (461)
Q Consensus 284 ~~~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk~YE--IVIfTas~~~YA~~IL 361 (461)
...+|.+++||.||||++....+. -+..=+++.+-|..|+..+. ++|.|.-...-.+..+
T Consensus 14 ~~a~~~~~~lDyDGTl~~i~~~p~------------------~a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l~~~~ 75 (266)
T COG1877 14 LNARKRLLFLDYDGTLTEIVPHPE------------------AAVPDDRLLSLLQDLASDPRNVVAIISGRSLAELERLF 75 (266)
T ss_pred ccccceEEEEeccccccccccCcc------------------ccCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHhc
Confidence 456778999999999998754331 23445788899999998888 7777777777777666
Q ss_pred H
Q 012551 362 D 362 (461)
Q Consensus 362 d 362 (461)
.
T Consensus 76 ~ 76 (266)
T COG1877 76 G 76 (266)
T ss_pred C
Confidence 6
No 150
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=78.50 E-value=3.7 Score=45.37 Aligned_cols=86 Identities=15% Similarity=0.092 Sum_probs=57.4
Q ss_pred EEeeCchHHHHHHHhhc-ccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccceeeCCceeeeccccCCCCCcEEEE
Q 012551 326 YVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAII 404 (461)
Q Consensus 326 ~V~~RPgL~eFLe~Lsk-~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~g~yiKDLs~LgrDLskVVII 404 (461)
.-..||++.++|++|.+ .++++|-|...+.+|+.+++.+.-+ +|... ....+...++ .+..+.++++.|
T Consensus 403 ~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~--~~~~~-----~p~~K~~~v~---~l~~~~~~v~~V 472 (562)
T TIGR01511 403 EDQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN--VRAEV-----LPDDKAALIK---ELQEKGRVVAMV 472 (562)
T ss_pred cccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc--EEccC-----ChHHHHHHHH---HHHHcCCEEEEE
Confidence 45689999999999985 5999999999999999999998764 22211 0001112222 233456789999
Q ss_pred ECCchhhccCCCceeee
Q 012551 405 DNSPQVFRLQVNNGIPI 421 (461)
Q Consensus 405 DDsp~~~~~qp~NgIpI 421 (461)
-|...-...-...++.|
T Consensus 473 GDg~nD~~al~~A~vgi 489 (562)
T TIGR01511 473 GDGINDAPALAQADVGI 489 (562)
T ss_pred eCCCccHHHHhhCCEEE
Confidence 99876553322234443
No 151
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=78.12 E-value=2.1 Score=39.39 Aligned_cols=81 Identities=19% Similarity=0.193 Sum_probs=58.8
Q ss_pred EEEeeCchHHHHHHHhhcc-cEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEccc-ceeeCCceeeeccccCCCCCcEE
Q 012551 325 VYVKQRPHLKTFLERVAEM-FEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRES-CIFSDGTYTKDLTVLGVDLAKVA 402 (461)
Q Consensus 325 ~~V~~RPgL~eFLe~Lsk~-YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~-C~~~~g~yiKDLs~LgrDLskVV 402 (461)
..-..||++.++|+.|.+. +.++|.|......|..+.+.+.... ..++.+. +...+..+.+-++.|+.+.+.|+
T Consensus 124 ~~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~----~~v~a~~~~kP~~k~~~~~i~~l~~~~~~v~ 199 (215)
T PF00702_consen 124 LRDPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIFD----SIVFARVIGKPEPKIFLRIIKELQVKPGEVA 199 (215)
T ss_dssp EEEEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCS----EEEEESHETTTHHHHHHHHHHHHTCTGGGEE
T ss_pred ecCcchhhhhhhhhhhhccCcceeeeecccccccccccccccccc----ccccccccccccchhHHHHHHHHhcCCCEEE
Confidence 3467899999999999976 9999999999999999999998743 2222211 11111133445566787888999
Q ss_pred EEECCch
Q 012551 403 IIDNSPQ 409 (461)
Q Consensus 403 IIDDsp~ 409 (461)
.|-|...
T Consensus 200 ~vGDg~n 206 (215)
T PF00702_consen 200 MVGDGVN 206 (215)
T ss_dssp EEESSGG
T ss_pred EEccCHH
Confidence 9998873
No 152
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=76.15 E-value=3.7 Score=43.08 Aligned_cols=53 Identities=21% Similarity=0.275 Sum_probs=44.0
Q ss_pred eEEEeeCchHHHHHHHhhc-ccEEEEEcCCChHHHHHHHHHH-C------CCCCeeeeEEE
Q 012551 324 TVYVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDIL-D------PDGKLISRRVY 376 (461)
Q Consensus 324 ~~~V~~RPgL~eFLe~Lsk-~YEIVIfTas~~~YA~~ILd~L-D------P~~klf~~RLy 376 (461)
.-||.+-||+.++|+++.+ ...+.|-|++...|++.+++.+ + ....+|+..+.
T Consensus 180 ~~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~yFD~IIt 240 (343)
T TIGR02244 180 EKYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRDYFDVVIV 240 (343)
T ss_pred HHHhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHhhCcEEEe
Confidence 3478889999999999985 5999999999999999999997 5 23557765554
No 153
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=76.00 E-value=1.6 Score=39.90 Aligned_cols=16 Identities=25% Similarity=0.553 Sum_probs=14.0
Q ss_pred ceEEEEeccccccccc
Q 012551 288 SVTLVLDLDETLVHST 303 (461)
Q Consensus 288 K~tLVLDLDeTLVhSs 303 (461)
.+.++||+||||+++.
T Consensus 5 ~~~viFD~DGTLiDs~ 20 (188)
T PRK10725 5 YAGLIFDMDGTILDTE 20 (188)
T ss_pred ceEEEEcCCCcCccCH
Confidence 4579999999999986
No 154
>PRK11587 putative phosphatase; Provisional
Probab=74.82 E-value=1.6 Score=41.41 Aligned_cols=15 Identities=47% Similarity=0.596 Sum_probs=13.7
Q ss_pred eEEEEeccccccccc
Q 012551 289 VTLVLDLDETLVHST 303 (461)
Q Consensus 289 ~tLVLDLDeTLVhSs 303 (461)
+.++|||||||+++.
T Consensus 4 k~viFDlDGTL~Ds~ 18 (218)
T PRK11587 4 KGFLFDLDGTLVDSL 18 (218)
T ss_pred CEEEEcCCCCcCcCH
Confidence 579999999999986
No 155
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=74.08 E-value=3.3 Score=40.66 Aligned_cols=74 Identities=16% Similarity=0.144 Sum_probs=43.2
Q ss_pred CCceEEEEeccccccccccc----cc-----CCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcc-cEEEEEcCCChH
Q 012551 286 RKSVTLVLDLDETLVHSTLE----YC-----DDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEM-FEVVIFTASQSI 355 (461)
Q Consensus 286 ~kK~tLVLDLDeTLVhSs~~----~~-----~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk~-YEIVIfTas~~~ 355 (461)
.++..+|||+||||+..... .. ...+|.-.+ .... -..=|++.+|++++.+. ++|++-|.-...
T Consensus 70 ~~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~~w~~wv--~~~~----~~aip~a~~l~~~~~~~G~~V~~iT~R~~~ 143 (229)
T PF03767_consen 70 DKPPAVVFDIDETVLSNSPYYAYLIFGGESFSPEDWDEWV--ASGK----APAIPGALELYNYARSRGVKVFFITGRPES 143 (229)
T ss_dssp TSEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CCHHHHHH--HCTG----GEEETTHHHHHHHHHHTTEEEEEEEEEETT
T ss_pred CCCcEEEEECCcccccCHHHHHHHhhccCCCChHHHHHHH--hccc----CcccHHHHHHHHHHHHCCCeEEEEecCCch
Confidence 57889999999999854321 00 011110000 0000 13458899999999855 898888876655
Q ss_pred HHHHHHHHHC
Q 012551 356 YAAQLLDILD 365 (461)
Q Consensus 356 YA~~ILd~LD 365 (461)
.-+.-++.|.
T Consensus 144 ~r~~T~~nL~ 153 (229)
T PF03767_consen 144 QREATEKNLK 153 (229)
T ss_dssp CHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 4444444443
No 156
>PRK11590 hypothetical protein; Provisional
Probab=71.30 E-value=2.3 Score=40.51 Aligned_cols=39 Identities=18% Similarity=0.066 Sum_probs=34.8
Q ss_pred EeeCchHHHHH-HHhh-cccEEEEEcCCChHHHHHHHHHHC
Q 012551 327 VKQRPHLKTFL-ERVA-EMFEVVIFTASQSIYAAQLLDILD 365 (461)
Q Consensus 327 V~~RPgL~eFL-e~Ls-k~YEIVIfTas~~~YA~~ILd~LD 365 (461)
+..+||+.+.| +.+. +.+.++|-|++...|+++++..+.
T Consensus 94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~ 134 (211)
T PRK11590 94 VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTP 134 (211)
T ss_pred CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHcc
Confidence 45689999999 5677 589999999999999999999977
No 157
>PHA02597 30.2 hypothetical protein; Provisional
Probab=71.30 E-value=2.1 Score=39.80 Aligned_cols=15 Identities=27% Similarity=0.372 Sum_probs=13.0
Q ss_pred eEEEEeccccccccc
Q 012551 289 VTLVLDLDETLVHST 303 (461)
Q Consensus 289 ~tLVLDLDeTLVhSs 303 (461)
+.++|||||||++..
T Consensus 3 k~viFDlDGTLiD~~ 17 (197)
T PHA02597 3 PTILTDVDGVLLSWQ 17 (197)
T ss_pred cEEEEecCCceEchh
Confidence 579999999999943
No 158
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=71.18 E-value=2.3 Score=42.03 Aligned_cols=93 Identities=19% Similarity=0.172 Sum_probs=69.7
Q ss_pred EEeeCchHHHHHHHhhc-ccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccceeeCC-----ceeeeccccCCCC-
Q 012551 326 YVKQRPHLKTFLERVAE-MFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDG-----TYTKDLTVLGVDL- 398 (461)
Q Consensus 326 ~V~~RPgL~eFLe~Lsk-~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~g-----~yiKDLs~LgrDL- 398 (461)
.++.=||+..++..|.. .-.+.++|++.+..++..++.+.---..|++...-+.-....| .|.+-++++|..+
T Consensus 90 ~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~f~~~v~~d~~~v~~gKP~Pdi~l~A~~~l~~~~~ 169 (222)
T KOG2914|consen 90 NSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKNFSHVVLGDDPEVKNGKPDPDIYLKAAKRLGVPPP 169 (222)
T ss_pred ccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHhcCCCeecCCccccCCCCCchHHHHHHHhcCCCCc
Confidence 37888999999999985 5899999999999999888887622235776666333222222 5788888999888
Q ss_pred CcEEEEECCchhhccCCCce
Q 012551 399 AKVAIIDNSPQVFRLQVNNG 418 (461)
Q Consensus 399 skVVIIDDsp~~~~~qp~Ng 418 (461)
+++++++|++........-|
T Consensus 170 ~k~lVfeds~~Gv~aa~aag 189 (222)
T KOG2914|consen 170 SKCLVFEDSPVGVQAAKAAG 189 (222)
T ss_pred cceEEECCCHHHHHHHHhcC
Confidence 99999999997665443333
No 159
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=71.12 E-value=1.9 Score=40.25 Aligned_cols=14 Identities=36% Similarity=0.648 Sum_probs=12.6
Q ss_pred EEEEeccccccccc
Q 012551 290 TLVLDLDETLVHST 303 (461)
Q Consensus 290 tLVLDLDeTLVhSs 303 (461)
.++|||||||+.+.
T Consensus 2 ~viFD~DGTLiDs~ 15 (197)
T TIGR01548 2 ALVLDMDGVMADVS 15 (197)
T ss_pred ceEEecCceEEech
Confidence 57999999999986
No 160
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=70.01 E-value=2.4 Score=38.86 Aligned_cols=14 Identities=36% Similarity=0.508 Sum_probs=12.4
Q ss_pred EEEEeccccccccc
Q 012551 290 TLVLDLDETLVHST 303 (461)
Q Consensus 290 tLVLDLDeTLVhSs 303 (461)
+++|||||||+.+.
T Consensus 2 ~viFDlDGTL~ds~ 15 (184)
T TIGR01993 2 VWFFDLDNTLYPHS 15 (184)
T ss_pred eEEEeCCCCCCCCc
Confidence 58999999999875
No 161
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=68.71 E-value=2.8 Score=39.32 Aligned_cols=15 Identities=33% Similarity=0.731 Sum_probs=13.4
Q ss_pred eEEEEeccccccccc
Q 012551 289 VTLVLDLDETLVHST 303 (461)
Q Consensus 289 ~tLVLDLDeTLVhSs 303 (461)
..++|||||||+++.
T Consensus 3 ~~viFDlDGTL~ds~ 17 (221)
T TIGR02253 3 KAIFFDLDDTLIDTS 17 (221)
T ss_pred eEEEEeCCCCCcCCC
Confidence 478999999999985
No 162
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=68.68 E-value=8.9 Score=43.66 Aligned_cols=62 Identities=23% Similarity=0.222 Sum_probs=44.8
Q ss_pred CCCceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc--ccEEEEEcCCChHHHHHHHH
Q 012551 285 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE--MFEVVIFTASQSIYAAQLLD 362 (461)
Q Consensus 285 ~~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk--~YEIVIfTas~~~YA~~ILd 362 (461)
..++..+++|+||||+.....+. .....|.+.+.|+.|.+ ...|+|-|.-.....++++.
T Consensus 489 ~~~~rLi~~D~DGTL~~~~~~~~------------------~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l~~~~~ 550 (726)
T PRK14501 489 AASRRLLLLDYDGTLVPFAPDPE------------------LAVPDKELRDLLRRLAADPNTDVAIISGRDRDTLERWFG 550 (726)
T ss_pred hccceEEEEecCccccCCCCCcc------------------cCCCCHHHHHHHHHHHcCCCCeEEEEeCCCHHHHHHHhC
Confidence 45678999999999985421110 11235788899999997 68899999988887777665
Q ss_pred HH
Q 012551 363 IL 364 (461)
Q Consensus 363 ~L 364 (461)
.+
T Consensus 551 ~~ 552 (726)
T PRK14501 551 DL 552 (726)
T ss_pred CC
Confidence 43
No 163
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=68.39 E-value=7.8 Score=38.18 Aligned_cols=54 Identities=24% Similarity=0.221 Sum_probs=34.3
Q ss_pred CceEEEEecccccc-cccccccCCCCceEEEEecceeeeEEEeeCchHHHHHH-HhhcccEEEEEcCCChHHHHHHHHHH
Q 012551 287 KSVTLVLDLDETLV-HSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLE-RVAEMFEVVIFTASQSIYAAQLLDIL 364 (461)
Q Consensus 287 kK~tLVLDLDeTLV-hSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe-~Lsk~YEIVIfTas~~~YA~~ILd~L 364 (461)
+++.||-||||||+ ... .-+.-+.++|+ ......-+++-|..+..-+.+++...
T Consensus 1 ~~~ll~sDlD~Tl~~~~~------------------------~~~~~l~~~l~~~~~~~~~~v~~TGRs~~~~~~~~~~~ 56 (247)
T PF05116_consen 1 PPRLLASDLDGTLIDGDD------------------------EALARLEELLEQQARPEILFVYVTGRSLESVLRLLREY 56 (247)
T ss_dssp -SEEEEEETBTTTBHCHH------------------------HHHHHHHHHHHHHHCCGEEEEEE-SS-HHHHHHHHHHC
T ss_pred CCEEEEEECCCCCcCCCH------------------------HHHHHHHHHHHHhhCCCceEEEECCCCHHHHHHHHHhC
Confidence 36799999999998 211 01344556666 33355677777888888888888764
No 164
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=67.66 E-value=2.8 Score=39.43 Aligned_cols=15 Identities=33% Similarity=0.412 Sum_probs=13.4
Q ss_pred eEEEEeccccccccc
Q 012551 289 VTLVLDLDETLVHST 303 (461)
Q Consensus 289 ~tLVLDLDeTLVhSs 303 (461)
++++|||||||+.+.
T Consensus 2 k~iiFD~DGTL~ds~ 16 (220)
T TIGR03351 2 SLVVLDMAGTTVDED 16 (220)
T ss_pred cEEEEecCCCeeccC
Confidence 578999999999986
No 165
>PRK11590 hypothetical protein; Provisional
Probab=67.60 E-value=8 Score=36.79 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=14.1
Q ss_pred CceEEEEeccccccccc
Q 012551 287 KSVTLVLDLDETLVHST 303 (461)
Q Consensus 287 kK~tLVLDLDeTLVhSs 303 (461)
++++++|||||||++..
T Consensus 5 ~~k~~iFD~DGTL~~~d 21 (211)
T PRK11590 5 ERRVVFFDLDGTLHQQD 21 (211)
T ss_pred cceEEEEecCCCCcccc
Confidence 45699999999999654
No 166
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=67.49 E-value=2.8 Score=38.03 Aligned_cols=15 Identities=20% Similarity=0.576 Sum_probs=13.5
Q ss_pred eEEEEeccccccccc
Q 012551 289 VTLVLDLDETLVHST 303 (461)
Q Consensus 289 ~tLVLDLDeTLVhSs 303 (461)
+.++||+||||+.+.
T Consensus 2 ~~iiFD~DGTL~ds~ 16 (185)
T TIGR02009 2 KAVIFDMDGVIVDTA 16 (185)
T ss_pred CeEEEcCCCcccCCh
Confidence 478999999999986
No 167
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=67.18 E-value=2.8 Score=40.34 Aligned_cols=16 Identities=38% Similarity=0.598 Sum_probs=14.1
Q ss_pred ceEEEEeccccccccc
Q 012551 288 SVTLVLDLDETLVHST 303 (461)
Q Consensus 288 K~tLVLDLDeTLVhSs 303 (461)
.+.++||+||||+++.
T Consensus 12 ~k~viFD~DGTL~Ds~ 27 (229)
T PRK13226 12 PRAVLFDLDGTLLDSA 27 (229)
T ss_pred CCEEEEcCcCccccCH
Confidence 3589999999999986
No 168
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=67.08 E-value=16 Score=36.71 Aligned_cols=59 Identities=20% Similarity=0.254 Sum_probs=41.7
Q ss_pred ceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHHHCC
Q 012551 288 SVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDP 366 (461)
Q Consensus 288 K~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~LDP 366 (461)
.+++++|||+|||-.+.+.. | +..-|.++. ..|+||..|+-++.--..+-+.|+-
T Consensus 7 ~~lIFtDlD~TLl~~~ye~~-----------------------p-A~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v 62 (274)
T COG3769 7 PLLIFTDLDGTLLPHSYEWQ-----------------------P-AAPVLLELKDAGVPVILCSSKTRAEMLYLQKSLGV 62 (274)
T ss_pred ceEEEEcccCcccCCCCCCC-----------------------c-cchHHHHHHHcCCeEEEeccchHHHHHHHHHhcCC
Confidence 46888999999997433221 1 123345555 6699999999888777788888998
Q ss_pred CCCe
Q 012551 367 DGKL 370 (461)
Q Consensus 367 ~~kl 370 (461)
++..
T Consensus 63 ~~~p 66 (274)
T COG3769 63 QGLP 66 (274)
T ss_pred CCCc
Confidence 8633
No 169
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=65.63 E-value=3.7 Score=40.85 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=16.7
Q ss_pred CCCCceEEEEeccccccccc
Q 012551 284 QGRKSVTLVLDLDETLVHST 303 (461)
Q Consensus 284 ~~~kK~tLVLDLDeTLVhSs 303 (461)
..+..+.+||||||||++|.
T Consensus 20 ~~~~~k~vIFDlDGTLvDS~ 39 (260)
T PLN03243 20 LGCGWLGVVLEWEGVIVEDD 39 (260)
T ss_pred hcCCceEEEEeCCCceeCCc
Confidence 35667789999999999984
No 170
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=65.62 E-value=3.5 Score=39.93 Aligned_cols=15 Identities=20% Similarity=0.215 Sum_probs=13.3
Q ss_pred eEEEEeccccccccc
Q 012551 289 VTLVLDLDETLVHST 303 (461)
Q Consensus 289 ~tLVLDLDeTLVhSs 303 (461)
+.++||+||||+.+.
T Consensus 3 k~viFD~DGTLiDs~ 17 (253)
T TIGR01422 3 EAVIFDWAGTTVDFG 17 (253)
T ss_pred eEEEEeCCCCeecCC
Confidence 579999999999974
No 171
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=65.44 E-value=3.6 Score=40.95 Aligned_cols=16 Identities=44% Similarity=0.576 Sum_probs=14.1
Q ss_pred ceEEEEeccccccccc
Q 012551 288 SVTLVLDLDETLVHST 303 (461)
Q Consensus 288 K~tLVLDLDeTLVhSs 303 (461)
++.++|||||||+++.
T Consensus 13 ~k~viFDlDGTL~Ds~ 28 (272)
T PRK13223 13 PRLVMFDLDGTLVDSV 28 (272)
T ss_pred CCEEEEcCCCccccCH
Confidence 3499999999999985
No 172
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=65.25 E-value=8.9 Score=36.80 Aligned_cols=53 Identities=19% Similarity=0.158 Sum_probs=30.3
Q ss_pred EEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcCCChHHHHHHHHHHCC
Q 012551 290 TLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQSIYAAQLLDILDP 366 (461)
Q Consensus 290 tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk~YEIVIfTas~~~YA~~ILd~LDP 366 (461)
.+++||||||++.... +.|.. +-|+...+.-.++|-|.-...-+..+++.++.
T Consensus 1 li~~DlDgTLl~~~~~-----------------------~~~~~-~~~~~~~~gi~~viaTGR~~~~v~~~~~~l~l 53 (236)
T TIGR02471 1 LIITDLDNTLLGDDEG-----------------------LASFV-ELLRGSGDAVGFGIATGRSVESAKSRYAKLNL 53 (236)
T ss_pred CeEEeccccccCCHHH-----------------------HHHHH-HHHHhcCCCceEEEEeCCCHHHHHHHHHhCCC
Confidence 3788999999974311 01111 33332234455666666666666666666654
No 173
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=65.23 E-value=3.1 Score=38.60 Aligned_cols=14 Identities=21% Similarity=0.211 Sum_probs=12.5
Q ss_pred EEEEeccccccccc
Q 012551 290 TLVLDLDETLVHST 303 (461)
Q Consensus 290 tLVLDLDeTLVhSs 303 (461)
.++|||||||+.+.
T Consensus 2 ~viFDlDGTL~d~~ 15 (203)
T TIGR02252 2 LITFDAVGTLLALK 15 (203)
T ss_pred eEEEecCCceeeeC
Confidence 68999999999874
No 174
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=64.93 E-value=3.6 Score=40.17 Aligned_cols=16 Identities=31% Similarity=0.453 Sum_probs=14.0
Q ss_pred ceEEEEeccccccccc
Q 012551 288 SVTLVLDLDETLVHST 303 (461)
Q Consensus 288 K~tLVLDLDeTLVhSs 303 (461)
-+.++|||||||+.+.
T Consensus 22 ~k~viFDlDGTLiDs~ 37 (248)
T PLN02770 22 LEAVLFDVDGTLCDSD 37 (248)
T ss_pred cCEEEEcCCCccCcCH
Confidence 3589999999999986
No 175
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=64.53 E-value=3.6 Score=40.44 Aligned_cols=16 Identities=19% Similarity=0.173 Sum_probs=13.9
Q ss_pred ceEEEEeccccccccc
Q 012551 288 SVTLVLDLDETLVHST 303 (461)
Q Consensus 288 K~tLVLDLDeTLVhSs 303 (461)
-++++|||||||+.+.
T Consensus 4 ~k~vIFDlDGTLiDs~ 19 (267)
T PRK13478 4 IQAVIFDWAGTTVDFG 19 (267)
T ss_pred eEEEEEcCCCCeecCC
Confidence 3589999999999984
No 176
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=64.08 E-value=3.9 Score=39.61 Aligned_cols=15 Identities=40% Similarity=0.627 Sum_probs=13.3
Q ss_pred eEEEEeccccccccc
Q 012551 289 VTLVLDLDETLVHST 303 (461)
Q Consensus 289 ~tLVLDLDeTLVhSs 303 (461)
+.++|||||||+.+.
T Consensus 11 k~iiFDlDGTL~D~~ 25 (238)
T PRK10748 11 SALTFDLDDTLYDNR 25 (238)
T ss_pred eeEEEcCcccccCCh
Confidence 589999999999974
No 177
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=63.26 E-value=3.1 Score=36.81 Aligned_cols=14 Identities=43% Similarity=0.776 Sum_probs=12.4
Q ss_pred EEEEeccccccccc
Q 012551 290 TLVLDLDETLVHST 303 (461)
Q Consensus 290 tLVLDLDeTLVhSs 303 (461)
+++||+||||+++.
T Consensus 1 ~iifD~DGTL~d~~ 14 (154)
T TIGR01549 1 AILFDIDGTLVDSS 14 (154)
T ss_pred CeEecCCCcccccH
Confidence 47999999999985
No 178
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=62.90 E-value=17 Score=35.01 Aligned_cols=38 Identities=13% Similarity=0.038 Sum_probs=33.8
Q ss_pred EeeCchHHHHHH-Hhh-cccEEEEEcCCChHHHHHHHHHH
Q 012551 327 VKQRPHLKTFLE-RVA-EMFEVVIFTASQSIYAAQLLDIL 364 (461)
Q Consensus 327 V~~RPgL~eFLe-~Ls-k~YEIVIfTas~~~YA~~ILd~L 364 (461)
+..+|++.+.|+ .+. +.+.++|-|++...|++++++..
T Consensus 93 ~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~ 132 (210)
T TIGR01545 93 VTAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDS 132 (210)
T ss_pred CCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhc
Confidence 367999999995 777 68999999999999999999774
No 179
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=62.90 E-value=12 Score=41.27 Aligned_cols=79 Identities=14% Similarity=0.063 Sum_probs=56.6
Q ss_pred EEeeCchHHHHHHHhh-cc-cEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccceeeCCceeeeccccCCCCCcEEE
Q 012551 326 YVKQRPHLKTFLERVA-EM-FEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAI 403 (461)
Q Consensus 326 ~V~~RPgL~eFLe~Ls-k~-YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~g~yiKDLs~LgrDLskVVI 403 (461)
....|||+.+.|++|. +. +.++|-|...+.+|+.+++.++-+. +|... .. ..+. +-++.++....+++.
T Consensus 382 ~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~~-~f~~~-~p----~~K~---~~v~~l~~~~~~v~~ 452 (556)
T TIGR01525 382 RDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGIDE-VHAEL-LP----EDKL---AIVKELQEEGGVVAM 452 (556)
T ss_pred cccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCCe-eeccC-CH----HHHH---HHHHHHHHcCCEEEE
Confidence 4678999999999997 45 9999999999999999999998854 44321 10 0111 223333445568999
Q ss_pred EECCchhhcc
Q 012551 404 IDNSPQVFRL 413 (461)
Q Consensus 404 IDDsp~~~~~ 413 (461)
|-|...-...
T Consensus 453 vGDg~nD~~a 462 (556)
T TIGR01525 453 VGDGINDAPA 462 (556)
T ss_pred EECChhHHHH
Confidence 9999865533
No 180
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=61.87 E-value=3.1 Score=38.83 Aligned_cols=13 Identities=54% Similarity=0.708 Sum_probs=11.8
Q ss_pred EEEeccccccccc
Q 012551 291 LVLDLDETLVHST 303 (461)
Q Consensus 291 LVLDLDeTLVhSs 303 (461)
+||||||||+.+.
T Consensus 1 iiFDlDGTL~Ds~ 13 (205)
T TIGR01454 1 VVFDLDGVLVDSF 13 (205)
T ss_pred CeecCcCccccCH
Confidence 5899999999986
No 181
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=61.81 E-value=3.8 Score=37.14 Aligned_cols=14 Identities=21% Similarity=0.605 Sum_probs=12.5
Q ss_pred EEEEeccccccccc
Q 012551 290 TLVLDLDETLVHST 303 (461)
Q Consensus 290 tLVLDLDeTLVhSs 303 (461)
.++||+||||+.+.
T Consensus 1 ~iiFD~DGTL~ds~ 14 (185)
T TIGR01990 1 AVIFDLDGVITDTA 14 (185)
T ss_pred CeEEcCCCccccCh
Confidence 37999999999987
No 182
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=60.60 E-value=5.1 Score=36.72 Aligned_cols=16 Identities=31% Similarity=0.439 Sum_probs=13.3
Q ss_pred ceEEEEeccccccccc
Q 012551 288 SVTLVLDLDETLVHST 303 (461)
Q Consensus 288 K~tLVLDLDeTLVhSs 303 (461)
.+++|+|+||||+...
T Consensus 4 ~k~viFD~DGTLid~~ 19 (201)
T TIGR01491 4 IKLIIFDLDGTLTDVM 19 (201)
T ss_pred ceEEEEeCCCCCcCCc
Confidence 3589999999999853
No 183
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=60.40 E-value=4.8 Score=40.50 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=15.2
Q ss_pred CCceEEEEeccccccccc
Q 012551 286 RKSVTLVLDLDETLVHST 303 (461)
Q Consensus 286 ~kK~tLVLDLDeTLVhSs 303 (461)
++-..+||||||||+.+.
T Consensus 38 ~~~k~VIFDlDGTLvDS~ 55 (286)
T PLN02779 38 ALPEALLFDCDGVLVETE 55 (286)
T ss_pred cCCcEEEEeCceeEEccc
Confidence 344689999999999987
No 184
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=60.14 E-value=5.3 Score=37.87 Aligned_cols=17 Identities=24% Similarity=0.505 Sum_probs=14.4
Q ss_pred CceEEEEeccccccccc
Q 012551 287 KSVTLVLDLDETLVHST 303 (461)
Q Consensus 287 kK~tLVLDLDeTLVhSs 303 (461)
+.+.++||+||||+++.
T Consensus 6 ~~k~iiFD~DGTL~d~~ 22 (222)
T PRK10826 6 QILAAIFDMDGLLIDSE 22 (222)
T ss_pred cCcEEEEcCCCCCCcCH
Confidence 35689999999999885
No 185
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=59.70 E-value=3.6 Score=38.24 Aligned_cols=13 Identities=54% Similarity=0.802 Sum_probs=11.6
Q ss_pred EEEeccccccccc
Q 012551 291 LVLDLDETLVHST 303 (461)
Q Consensus 291 LVLDLDeTLVhSs 303 (461)
+|||+||||+.+.
T Consensus 1 viFD~DGTL~Ds~ 13 (213)
T TIGR01449 1 VLFDLDGTLVDSA 13 (213)
T ss_pred CeecCCCccccCH
Confidence 5899999999975
No 186
>PRK09449 dUMP phosphatase; Provisional
Probab=59.35 E-value=4.6 Score=38.07 Aligned_cols=14 Identities=43% Similarity=0.520 Sum_probs=12.3
Q ss_pred eEEEEecccccccc
Q 012551 289 VTLVLDLDETLVHS 302 (461)
Q Consensus 289 ~tLVLDLDeTLVhS 302 (461)
+.++|||||||++.
T Consensus 4 k~iiFDlDGTLid~ 17 (224)
T PRK09449 4 DWILFDADETLFHF 17 (224)
T ss_pred cEEEEcCCCchhcc
Confidence 58999999999974
No 187
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=59.17 E-value=4.8 Score=37.57 Aligned_cols=15 Identities=40% Similarity=0.654 Sum_probs=13.2
Q ss_pred eEEEEeccccccccc
Q 012551 289 VTLVLDLDETLVHST 303 (461)
Q Consensus 289 ~tLVLDLDeTLVhSs 303 (461)
+.++||+||||+++.
T Consensus 2 k~viFD~DGTL~d~~ 16 (224)
T TIGR02254 2 KTLLFDLDDTILDFQ 16 (224)
T ss_pred CEEEEcCcCcccccc
Confidence 479999999999975
No 188
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=59.13 E-value=19 Score=36.80 Aligned_cols=81 Identities=12% Similarity=0.138 Sum_probs=47.2
Q ss_pred CceEEEEeccccccccccccc----CCCCceEEEEec-ceeeeEEEeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHH
Q 012551 287 KSVTLVLDLDETLVHSTLEYC----DDADFTFTVFFN-MKEHTVYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQL 360 (461)
Q Consensus 287 kK~tLVLDLDeTLVhSs~~~~----~~~df~~~i~~~-~~~~~~~V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~I 360 (461)
++-.+|||+|||++....... ....|.- ..+. .-...--..-=|++.+|++++. ..+.|++.|.-....-+.=
T Consensus 100 ~~dA~V~DIDET~LsN~pY~~~~~~g~e~~~~-~~w~~~Wv~~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT 178 (275)
T TIGR01680 100 EKDTFLFNIDGTALSNIPYYKKHGYGSEKFDS-ELYDEEFVNKGEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVT 178 (275)
T ss_pred CCCEEEEECccccccCHHHHHHhcCCCCcCCh-hhhhHHHHhcccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHH
Confidence 457999999999995431110 0011110 0000 0000001233589999999997 5699999999887666556
Q ss_pred HHHHCCCC
Q 012551 361 LDILDPDG 368 (461)
Q Consensus 361 Ld~LDP~~ 368 (461)
++.|...|
T Consensus 179 ~~NL~kaG 186 (275)
T TIGR01680 179 EANLKKAG 186 (275)
T ss_pred HHHHHHcC
Confidence 66665555
No 189
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=58.73 E-value=4.9 Score=37.21 Aligned_cols=15 Identities=33% Similarity=0.377 Sum_probs=13.1
Q ss_pred eEEEEeccccccccc
Q 012551 289 VTLVLDLDETLVHST 303 (461)
Q Consensus 289 ~tLVLDLDeTLVhSs 303 (461)
+.++||+||||+++.
T Consensus 2 k~viFD~dgTLiD~~ 16 (198)
T TIGR01428 2 KALVFDVYGTLFDVH 16 (198)
T ss_pred cEEEEeCCCcCccHH
Confidence 378999999999975
No 190
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=58.45 E-value=4.8 Score=36.39 Aligned_cols=13 Identities=38% Similarity=0.516 Sum_probs=11.8
Q ss_pred EEEeccccccccc
Q 012551 291 LVLDLDETLVHST 303 (461)
Q Consensus 291 LVLDLDeTLVhSs 303 (461)
|+|||||||+.+.
T Consensus 2 viFD~DGTL~D~~ 14 (175)
T TIGR01493 2 MVFDVYGTLVDVH 14 (175)
T ss_pred eEEecCCcCcccH
Confidence 7899999999976
No 191
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=58.31 E-value=5.6 Score=37.25 Aligned_cols=15 Identities=20% Similarity=0.419 Sum_probs=13.1
Q ss_pred eEEEEeccccccccc
Q 012551 289 VTLVLDLDETLVHST 303 (461)
Q Consensus 289 ~tLVLDLDeTLVhSs 303 (461)
+.++|||||||+++.
T Consensus 3 k~viFDldGtL~d~~ 17 (211)
T TIGR02247 3 KAVIFDFGGVLLPSP 17 (211)
T ss_pred eEEEEecCCceecCH
Confidence 479999999999874
No 192
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=58.10 E-value=5.1 Score=37.53 Aligned_cols=15 Identities=47% Similarity=0.627 Sum_probs=13.2
Q ss_pred eEEEEeccccccccc
Q 012551 289 VTLVLDLDETLVHST 303 (461)
Q Consensus 289 ~tLVLDLDeTLVhSs 303 (461)
..++||+||||+++.
T Consensus 7 ~~iiFD~DGTL~d~~ 21 (226)
T PRK13222 7 RAVAFDLDGTLVDSA 21 (226)
T ss_pred cEEEEcCCcccccCH
Confidence 489999999999874
No 193
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=57.01 E-value=5.2 Score=34.94 Aligned_cols=13 Identities=46% Similarity=0.828 Sum_probs=11.7
Q ss_pred EEEeccccccccc
Q 012551 291 LVLDLDETLVHST 303 (461)
Q Consensus 291 LVLDLDeTLVhSs 303 (461)
++||+||||+++.
T Consensus 1 iifD~dgtL~d~~ 13 (176)
T PF13419_consen 1 IIFDLDGTLVDTD 13 (176)
T ss_dssp EEEESBTTTEEHH
T ss_pred cEEECCCCcEeCH
Confidence 6899999999875
No 194
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=56.33 E-value=6.2 Score=37.20 Aligned_cols=16 Identities=38% Similarity=0.424 Sum_probs=13.8
Q ss_pred ceEEEEeccccccccc
Q 012551 288 SVTLVLDLDETLVHST 303 (461)
Q Consensus 288 K~tLVLDLDeTLVhSs 303 (461)
.+.++||+||||+.+.
T Consensus 4 ~~~viFD~DGTL~d~~ 19 (221)
T PRK10563 4 IEAVFFDCDGTLVDSE 19 (221)
T ss_pred CCEEEECCCCCCCCCh
Confidence 3589999999999875
No 195
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=55.56 E-value=8.6 Score=42.18 Aligned_cols=80 Identities=14% Similarity=0.117 Sum_probs=58.3
Q ss_pred EEEeeCchHHHHHHHhhc-cc-EEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccceeeCCceeeeccccCCCCCcEE
Q 012551 325 VYVKQRPHLKTFLERVAE-MF-EVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVA 402 (461)
Q Consensus 325 ~~V~~RPgL~eFLe~Lsk-~Y-EIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~g~yiKDLs~LgrDLskVV 402 (461)
.....||++.+.|++|.+ .+ +++|-|+..+.+|+.+++.+...+ +|.... . ....+-++.++...++++
T Consensus 359 ~~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~~-~f~~~~------p--~~K~~~i~~l~~~~~~v~ 429 (536)
T TIGR01512 359 LSDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGIDE-VHAELL------P--EDKLEIVKELREKYGPVA 429 (536)
T ss_pred EeccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCChh-hhhccC------c--HHHHHHHHHHHhcCCEEE
Confidence 346789999999999985 48 999999999999999999998764 332111 1 111233444556668999
Q ss_pred EEECCchhhcc
Q 012551 403 IIDNSPQVFRL 413 (461)
Q Consensus 403 IIDDsp~~~~~ 413 (461)
.|-|...-...
T Consensus 430 ~vGDg~nD~~a 440 (536)
T TIGR01512 430 MVGDGINDAPA 440 (536)
T ss_pred EEeCCHHHHHH
Confidence 99999865543
No 196
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=54.93 E-value=7 Score=39.08 Aligned_cols=83 Identities=13% Similarity=0.035 Sum_probs=63.5
Q ss_pred EEEeeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccceeeC---CceeeeccccCCCCCc
Q 012551 325 VYVKQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSD---GTYTKDLTVLGVDLAK 400 (461)
Q Consensus 325 ~~V~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~---g~yiKDLs~LgrDLsk 400 (461)
.+....|-+ ++|++++ +.+.|.|.|....++= .++..+... .+|+..+..-.-...+ ..|.+=|+++|..++.
T Consensus 111 ~~~~~~~~~-~~lq~lR~~g~~l~iisN~d~r~~-~~l~~~~l~-~~fD~vv~S~e~g~~KPDp~If~~al~~l~v~Pee 187 (237)
T KOG3085|consen 111 AWKYLDGMQ-ELLQKLRKKGTILGIISNFDDRLR-LLLLPLGLS-AYFDFVVESCEVGLEKPDPRIFQLALERLGVKPEE 187 (237)
T ss_pred CceeccHHH-HHHHHHHhCCeEEEEecCCcHHHH-HHhhccCHH-HhhhhhhhhhhhccCCCChHHHHHHHHHhCCChHH
Confidence 345556666 9999999 5689999999998887 777777776 5888877622222222 3677888899999999
Q ss_pred EEEEECCchh
Q 012551 401 VAIIDNSPQV 410 (461)
Q Consensus 401 VVIIDDsp~~ 410 (461)
+|.|||....
T Consensus 188 ~vhIgD~l~n 197 (237)
T KOG3085|consen 188 CVHIGDLLEN 197 (237)
T ss_pred eEEecCcccc
Confidence 9999999976
No 197
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=53.35 E-value=6 Score=35.52 Aligned_cols=13 Identities=38% Similarity=0.769 Sum_probs=11.9
Q ss_pred EEEeccccccccc
Q 012551 291 LVLDLDETLVHST 303 (461)
Q Consensus 291 LVLDLDeTLVhSs 303 (461)
++|||||||+.+.
T Consensus 2 vlFDlDgtLv~~~ 14 (183)
T TIGR01509 2 ILFDLDGVLVDTS 14 (183)
T ss_pred eeeccCCceechH
Confidence 7999999999985
No 198
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=51.49 E-value=12 Score=33.93 Aligned_cols=47 Identities=17% Similarity=0.260 Sum_probs=37.5
Q ss_pred eCchHH----HHHHHhh-cccEEEEEcCCChHHHHHHHHHHCCCC-CeeeeEE
Q 012551 329 QRPHLK----TFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDG-KLISRRV 375 (461)
Q Consensus 329 ~RPgL~----eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~LDP~~-klf~~RL 375 (461)
++|++. +||+++. +.++++|-|++...+++.+++.+.-.. ..+..++
T Consensus 86 ~~~~~~~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~~~ 138 (192)
T PF12710_consen 86 LFPGFIPDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIGNEL 138 (192)
T ss_dssp HCTTCHTTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEEEEE
T ss_pred cCcCchhhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEEEee
Confidence 356666 9999985 779999999999999999999887654 2444555
No 199
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=50.48 E-value=23 Score=34.22 Aligned_cols=49 Identities=22% Similarity=0.156 Sum_probs=29.2
Q ss_pred EEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccE--EEEEcCCChHHHH
Q 012551 292 VLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFE--VVIFTASQSIYAA 358 (461)
Q Consensus 292 VLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk~YE--IVIfTas~~~YA~ 358 (461)
.||.||||+-....+ --.+.-|++.+.|+.|+.... |+|-|.-...-.+
T Consensus 1 ~lDyDGTL~p~~~~p------------------~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~~~ 51 (235)
T PF02358_consen 1 FLDYDGTLAPIVDDP------------------DAAVPPPELRELLRALAADPNNTVAIVSGRSLDDLE 51 (235)
T ss_dssp EEE-TTTSS---S-G------------------GG----HHHHHHHHHHHHHSE--EEEE-SS-HHHHH
T ss_pred CcccCCccCCCCCCc------------------cccCCCHHHHHHHHHHhccCCCEEEEEEeCCHHHhH
Confidence 589999998543221 124567999999999998766 7777777766633
No 200
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=49.77 E-value=27 Score=40.51 Aligned_cols=64 Identities=17% Similarity=0.147 Sum_probs=44.8
Q ss_pred CCCceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhc--ccEEEEEcCCChHHHHHHHH
Q 012551 285 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAE--MFEVVIFTASQSIYAAQLLD 362 (461)
Q Consensus 285 ~~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk--~YEIVIfTas~~~YA~~ILd 362 (461)
..++..|+||.||||+.....+ ....-+..-|++.+-|+.|++ .-.|+|-|.-...-.++++.
T Consensus 504 ~a~~rll~LDyDGTL~~~~~~~---------------~~p~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L~~~~~ 568 (797)
T PLN03063 504 KSNNRLLILGFYGTLTEPRNSQ---------------IKEMDLGLHPELKETLKALCSDPKTTVVVLSRSGKDILDKNFG 568 (797)
T ss_pred hccCeEEEEecCccccCCCCCc---------------cccccCCCCHHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHhC
Confidence 4567889999999999532111 011124456889999999985 47888889888777777775
Q ss_pred H
Q 012551 363 I 363 (461)
Q Consensus 363 ~ 363 (461)
.
T Consensus 569 ~ 569 (797)
T PLN03063 569 E 569 (797)
T ss_pred C
Confidence 3
No 201
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=48.85 E-value=41 Score=31.69 Aligned_cols=62 Identities=18% Similarity=0.231 Sum_probs=40.2
Q ss_pred EEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcc-cEEEEEcCCChHHHHHHHHHH
Q 012551 291 LVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEM-FEVVIFTASQSIYAAQLLDIL 364 (461)
Q Consensus 291 LVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk~-YEIVIfTas~~~YA~~ILd~L 364 (461)
+|.|+||||.-|-... ... ...+.. +.|||+-++...+.+. |.++=-|+-.-..|...-+.|
T Consensus 2 VvsDIDGTiT~SD~~G-----~i~----~~~G~d---~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L 64 (157)
T PF08235_consen 2 VVSDIDGTITKSDVLG-----HIL----PILGKD---WTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWL 64 (157)
T ss_pred EEEeccCCcCccchhh-----hhh----hccCch---hhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHH
Confidence 6889999998763110 000 111111 6799999999999954 888777887766665544443
No 202
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=48.23 E-value=31 Score=40.53 Aligned_cols=60 Identities=17% Similarity=0.114 Sum_probs=39.3
Q ss_pred CCCceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhh--cccEEEEEcCCChHHHHHHHH
Q 012551 285 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVA--EMFEVVIFTASQSIYAAQLLD 362 (461)
Q Consensus 285 ~~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Ls--k~YEIVIfTas~~~YA~~ILd 362 (461)
..++..|+||+||||+..... -+..-|++.+-|+.|+ +...++|-|.-...-.++++.
T Consensus 593 ~~~~rlI~LDyDGTLlp~~~~--------------------~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~~~L~~~f~ 652 (854)
T PLN02205 593 RTTTRAILLDYDGTLMPQASI--------------------DKSPSSKSIDILNTLCRDKNNMVFIVSARSRKTLADWFS 652 (854)
T ss_pred hhcCeEEEEecCCcccCCccc--------------------cCCCCHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHhC
Confidence 345788999999999954210 0122367788888874 346777777777666666664
Q ss_pred HH
Q 012551 363 IL 364 (461)
Q Consensus 363 ~L 364 (461)
-+
T Consensus 653 ~~ 654 (854)
T PLN02205 653 PC 654 (854)
T ss_pred CC
Confidence 43
No 203
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=44.19 E-value=9 Score=41.04 Aligned_cols=16 Identities=31% Similarity=0.559 Sum_probs=14.0
Q ss_pred ceEEEEeccccccccc
Q 012551 288 SVTLVLDLDETLVHST 303 (461)
Q Consensus 288 K~tLVLDLDeTLVhSs 303 (461)
-..++|||||||+++.
T Consensus 241 ~k~vIFDlDGTLiDs~ 256 (459)
T PRK06698 241 LQALIFDMDGTLFQTD 256 (459)
T ss_pred hhheeEccCCceecch
Confidence 3579999999999986
No 204
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=44.16 E-value=24 Score=35.51 Aligned_cols=100 Identities=18% Similarity=0.231 Sum_probs=55.9
Q ss_pred EEeeCchHHHHHHHhhcc-cEEEEEcCCChHHHHHHHHHHC---CCCCeeeeEEEcccce----eeCC---ceeeecccc
Q 012551 326 YVKQRPHLKTFLERVAEM-FEVVIFTASQSIYAAQLLDILD---PDGKLISRRVYRESCI----FSDG---TYTKDLTVL 394 (461)
Q Consensus 326 ~V~~RPgL~eFLe~Lsk~-YEIVIfTas~~~YA~~ILd~LD---P~~klf~~RLyRe~C~----~~~g---~yiKDLs~L 394 (461)
-+.+|.|+.+|++.|.++ --+.|||||--...+.+|+.-. |.=+.++..+.-+... +... .|.|+-..+
T Consensus 88 ~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~~~~~~Nv~VvSN~M~Fd~~g~l~gF~~~lIH~~NKn~~~l 167 (246)
T PF05822_consen 88 DIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQAGVFHPNVKVVSNFMDFDEDGVLVGFKGPLIHTFNKNESAL 167 (246)
T ss_dssp ---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHTT--BTTEEEEEE-EEE-TTSBEEEE-SS---TT-HHHHHH
T ss_pred chhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHcCCCCCCeEEEeeeEEECCcceEeecCCCceEEeeCCcccc
Confidence 488999999999999966 7999999999999999999863 1113444444322111 1111 233443333
Q ss_pred --------CCCCCcEEEEECCchhhcc-----CCCceeeecccc
Q 012551 395 --------GVDLAKVAIIDNSPQVFRL-----QVNNGIPIESWF 425 (461)
Q Consensus 395 --------grDLskVVIIDDsp~~~~~-----qp~NgIpI~s~~ 425 (461)
-....+|+++=|+..-..+ ..+|.|.|-=..
T Consensus 168 ~~~~~~~~~~~R~NvlLlGDslgD~~Ma~G~~~~~~~lkIGFLn 211 (246)
T PF05822_consen 168 EDSPYFKQLKKRTNVLLLGDSLGDLHMADGVPDEENVLKIGFLN 211 (246)
T ss_dssp TTHHHHHCTTT--EEEEEESSSGGGGTTTT-S--SEEEEEEEE-
T ss_pred cCchHHHHhccCCcEEEecCccCChHhhcCCCccccEEEEEecc
Confidence 1356889999999975532 345666664333
No 205
>PLN02382 probable sucrose-phosphatase
Probab=43.78 E-value=58 Score=34.85 Aligned_cols=17 Identities=35% Similarity=0.530 Sum_probs=14.4
Q ss_pred CCceEEEEecccccccc
Q 012551 286 RKSVTLVLDLDETLVHS 302 (461)
Q Consensus 286 ~kK~tLVLDLDeTLVhS 302 (461)
.+++.||.||||||+..
T Consensus 7 ~~~~lI~sDLDGTLL~~ 23 (413)
T PLN02382 7 SPRLMIVSDLDHTMVDH 23 (413)
T ss_pred CCCEEEEEcCCCcCcCC
Confidence 45789999999999964
No 206
>PLN02940 riboflavin kinase
Probab=43.16 E-value=15 Score=38.78 Aligned_cols=16 Identities=38% Similarity=0.630 Sum_probs=13.9
Q ss_pred ceEEEEeccccccccc
Q 012551 288 SVTLVLDLDETLVHST 303 (461)
Q Consensus 288 K~tLVLDLDeTLVhSs 303 (461)
-+.++|||||||+.+.
T Consensus 11 ik~VIFDlDGTLvDt~ 26 (382)
T PLN02940 11 VSHVILDLDGTLLNTD 26 (382)
T ss_pred CCEEEECCcCcCCcCH
Confidence 4579999999999985
No 207
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=43.08 E-value=11 Score=40.05 Aligned_cols=18 Identities=0% Similarity=0.172 Sum_probs=15.4
Q ss_pred CCceEEEEeccccccccc
Q 012551 286 RKSVTLVLDLDETLVHST 303 (461)
Q Consensus 286 ~kK~tLVLDLDeTLVhSs 303 (461)
.+-+.+|||||||||.+.
T Consensus 129 ~~~~~VIFDlDGTLIDS~ 146 (381)
T PLN02575 129 CGWLGAIFEWEGVIIEDN 146 (381)
T ss_pred CCCCEEEEcCcCcceeCH
Confidence 456789999999999875
No 208
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=42.67 E-value=14 Score=35.21 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=13.6
Q ss_pred ceEEEEeccccccccc
Q 012551 288 SVTLVLDLDETLVHST 303 (461)
Q Consensus 288 K~tLVLDLDeTLVhSs 303 (461)
++++++|+||||+...
T Consensus 3 ~~~vifDfDgTi~~~d 18 (219)
T PRK09552 3 SIQIFCDFDGTITNND 18 (219)
T ss_pred CcEEEEcCCCCCCcch
Confidence 4589999999999764
No 209
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=40.15 E-value=15 Score=35.26 Aligned_cols=16 Identities=31% Similarity=0.436 Sum_probs=13.7
Q ss_pred ceEEEEeccccccccc
Q 012551 288 SVTLVLDLDETLVHST 303 (461)
Q Consensus 288 K~tLVLDLDeTLVhSs 303 (461)
++..++|+||||++.-
T Consensus 5 ~~la~FDfDgTLt~~d 20 (210)
T TIGR01545 5 KRIIFFDLDGTLHQQD 20 (210)
T ss_pred CcEEEEcCCCCCccCc
Confidence 5678999999999874
No 210
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=39.98 E-value=17 Score=33.90 Aligned_cols=16 Identities=31% Similarity=0.463 Sum_probs=13.8
Q ss_pred ceEEEEeccccccccc
Q 012551 288 SVTLVLDLDETLVHST 303 (461)
Q Consensus 288 K~tLVLDLDeTLVhSs 303 (461)
.+.++||+||||++..
T Consensus 4 ~k~i~FD~d~TL~d~~ 19 (229)
T COG1011 4 IKAILFDLDGTLLDFD 19 (229)
T ss_pred eeEEEEecCCcccccc
Confidence 4689999999999974
No 211
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=39.02 E-value=55 Score=30.13 Aligned_cols=71 Identities=23% Similarity=0.287 Sum_probs=44.8
Q ss_pred EEecceeeeEEEeeCchHHHHHHHhhcc-cEEEEEcCCChH-HHHHHHHHHCCCCCeeeeEEEcccceeeCCceeeeccc
Q 012551 316 VFFNMKEHTVYVKQRPHLKTFLERVAEM-FEVVIFTASQSI-YAAQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTV 393 (461)
Q Consensus 316 i~~~~~~~~~~V~~RPgL~eFLe~Lsk~-YEIVIfTas~~~-YA~~ILd~LDP~~klf~~RLyRe~C~~~~g~yiKDLs~ 393 (461)
+.+.+.+ ..++++.++++.+.+. +.+.|+|.+... --+.+++.+|- ...|.|+.+|..
T Consensus 65 Vt~SGGE-----l~~~~l~~ll~~lk~~Gl~i~l~Tg~~~~~~~~~il~~iD~---------------l~~g~y~~~~~~ 124 (147)
T TIGR02826 65 VLFLGGE-----WNREALLSLLKIFKEKGLKTCLYTGLEPKDIPLELVQHLDY---------------LKTGRWIHTRGG 124 (147)
T ss_pred EEEechh-----cCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHhCCE---------------EEEChHHHHcCC
Confidence 4455555 4678999999999864 899999986542 23445555543 234555555555
Q ss_pred cCCCCCcEEEEEC
Q 012551 394 LGVDLAKVAIIDN 406 (461)
Q Consensus 394 LgrDLskVVIIDD 406 (461)
+++.-+|=+|+|-
T Consensus 125 ~~~~~sNQ~~~~~ 137 (147)
T TIGR02826 125 LGSPTTNQIFIDL 137 (147)
T ss_pred CCCCCcCceEEEC
Confidence 5444456667764
No 212
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=38.84 E-value=17 Score=33.95 Aligned_cols=14 Identities=21% Similarity=0.437 Sum_probs=12.5
Q ss_pred EEEEeccccccccc
Q 012551 290 TLVLDLDETLVHST 303 (461)
Q Consensus 290 tLVLDLDeTLVhSs 303 (461)
++||||||||++..
T Consensus 2 ~viFDldgvL~d~~ 15 (199)
T PRK09456 2 LYIFDLGNVIVDID 15 (199)
T ss_pred EEEEeCCCccccCc
Confidence 68999999999874
No 213
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=36.94 E-value=65 Score=38.38 Aligned_cols=71 Identities=15% Similarity=0.178 Sum_probs=48.1
Q ss_pred CCCceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcc--cEEEEEcCCChHHHHHHHH
Q 012551 285 GRKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEM--FEVVIFTASQSIYAAQLLD 362 (461)
Q Consensus 285 ~~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk~--YEIVIfTas~~~YA~~ILd 362 (461)
..++..|+||.||||+-....+...... -....+..-|.+.+.|+.|+.. ..|+|-|.-...-.+.++.
T Consensus 588 ~a~~RLlfLDyDGTLap~~~~P~~~~~~---------~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~fg 658 (934)
T PLN03064 588 QSNNRLLILGFNATLTEPVDTPGRRGDQ---------IKEMELRLHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENFG 658 (934)
T ss_pred hccceEEEEecCceeccCCCCccccccc---------ccccccCCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhC
Confidence 4567889999999998653222100000 0011244558899999999954 7899999999888888776
Q ss_pred HH
Q 012551 363 IL 364 (461)
Q Consensus 363 ~L 364 (461)
.+
T Consensus 659 ~~ 660 (934)
T PLN03064 659 EF 660 (934)
T ss_pred CC
Confidence 55
No 214
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=33.50 E-value=1.1e+02 Score=28.47 Aligned_cols=66 Identities=26% Similarity=0.346 Sum_probs=34.9
Q ss_pred eCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccceeeCCceeeeccccCCCCCcEEEEECC
Q 012551 329 QRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDNS 407 (461)
Q Consensus 329 ~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~g~yiKDLs~LgrDLskVVIIDDs 407 (461)
.|-.+.+||+.+. +.-.|++|-|+.+.- .+|..++...+++. .+||++
T Consensus 53 ~~~~l~~~L~~~~~~gk~I~~yGA~~kg~--tlln~~g~~~~~I~-----------------------------~vvD~n 101 (160)
T PF08484_consen 53 SKAELREFLEKLKAEGKRIAGYGAGAKGN--TLLNYFGLDNDLID-----------------------------YVVDDN 101 (160)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE---SHHH--HHHHHHT--TTTS-------------------------------EEES-
T ss_pred HHHHHHHHHHHHHHcCCEEEEECcchHHH--HHHHHhCCCcceeE-----------------------------EEEeCC
Confidence 4566778888887 556799999987754 56777777654442 366666
Q ss_pred chhh-ccCCCceeeecccc
Q 012551 408 PQVF-RLQVNNGIPIESWF 425 (461)
Q Consensus 408 p~~~-~~qp~NgIpI~s~~ 425 (461)
|... .+-|..+|||.+..
T Consensus 102 p~K~G~~~PGt~ipI~~p~ 120 (160)
T PF08484_consen 102 PLKQGKYLPGTHIPIVSPE 120 (160)
T ss_dssp GGGTTEE-TTT--EEEEGG
T ss_pred hhhcCcccCCCCCeECCHH
Confidence 6655 33566666666553
No 215
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=30.17 E-value=77 Score=34.26 Aligned_cols=58 Identities=16% Similarity=0.141 Sum_probs=37.8
Q ss_pred CCceEEEEecccccccccccccCCCCceEEEEecceeeeEEEeeCchHHHHHHHhhcccEEEEEcCCC
Q 012551 286 RKSVTLVLDLDETLVHSTLEYCDDADFTFTVFFNMKEHTVYVKQRPHLKTFLERVAEMFEVVIFTASQ 353 (461)
Q Consensus 286 ~kK~tLVLDLDeTLVhSs~~~~~~~df~~~i~~~~~~~~~~V~~RPgL~eFLe~Lsk~YEIVIfTas~ 353 (461)
...+..-||+|+|||...... .+......|.+..++.-..+=+.=.+.|-++|||...
T Consensus 73 ~~~K~i~FD~dgtlI~t~sg~----------vf~~~~~dw~~l~~~vp~Klktl~~~g~~l~iftnq~ 130 (422)
T KOG2134|consen 73 GGSKIIMFDYDGTLIDTKSGK----------VFPKGSMDWRILFPEVPSKLKTLYQDGIKLFIFTNQN 130 (422)
T ss_pred CCcceEEEecCCceeecCCcc----------eeeccCccceeeccccchhhhhhccCCeEEEEEeccc
Confidence 345688999999999875321 1222334555666666666544444779999999765
No 216
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=30.02 E-value=24 Score=31.58 Aligned_cols=13 Identities=31% Similarity=0.560 Sum_probs=11.1
Q ss_pred EEEeccccccccc
Q 012551 291 LVLDLDETLVHST 303 (461)
Q Consensus 291 LVLDLDeTLVhSs 303 (461)
+|+|+||||+...
T Consensus 2 ~~fD~DgTl~~~~ 14 (177)
T TIGR01488 2 AIFDFDGTLTRQD 14 (177)
T ss_pred EEecCccccccch
Confidence 6899999999754
No 217
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=28.76 E-value=45 Score=36.80 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=19.2
Q ss_pred EEEEEcCCChHHHHHHHHH-HCCC
Q 012551 345 EVVIFTASQSIYAAQLLDI-LDPD 367 (461)
Q Consensus 345 EIVIfTas~~~YA~~ILd~-LDP~ 367 (461)
+.+|-||+.+.|++++++. |+-+
T Consensus 124 ~~vvVSASp~~~Vepfa~~~LGid 147 (497)
T PLN02177 124 KRYIITASPRIMVEPFVKTFLGAD 147 (497)
T ss_pred CEEEEECCcHHHHHHHHHHcCCCC
Confidence 4599999999999999976 5554
No 218
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=28.30 E-value=32 Score=31.11 Aligned_cols=13 Identities=38% Similarity=0.682 Sum_probs=11.3
Q ss_pred EEEeccccccccc
Q 012551 291 LVLDLDETLVHST 303 (461)
Q Consensus 291 LVLDLDeTLVhSs 303 (461)
+|+|+||||+...
T Consensus 1 v~fD~DGTL~~~~ 13 (192)
T PF12710_consen 1 VIFDFDGTLTDSD 13 (192)
T ss_dssp EEEESBTTTBSSH
T ss_pred eEEecCcCeecCC
Confidence 5899999998775
No 219
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=26.67 E-value=32 Score=31.76 Aligned_cols=13 Identities=31% Similarity=0.445 Sum_probs=11.1
Q ss_pred EEEeccccccccc
Q 012551 291 LVLDLDETLVHST 303 (461)
Q Consensus 291 LVLDLDeTLVhSs 303 (461)
.++|+||||+...
T Consensus 2 a~FD~DgTL~~~~ 14 (202)
T TIGR01490 2 AFFDFDGTLTAKD 14 (202)
T ss_pred eEEccCCCCCCCc
Confidence 6899999999853
No 220
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=25.80 E-value=1.2e+02 Score=33.05 Aligned_cols=52 Identities=23% Similarity=0.388 Sum_probs=40.0
Q ss_pred EEEeeCchHHHHHHHhhccc-EEEEEcCCChHHHHHHHHHH-CC-------CCCeeeeEEE
Q 012551 325 VYVKQRPHLKTFLERVAEMF-EVVIFTASQSIYAAQLLDIL-DP-------DGKLISRRVY 376 (461)
Q Consensus 325 ~~V~~RPgL~eFLe~Lsk~Y-EIVIfTas~~~YA~~ILd~L-DP-------~~klf~~RLy 376 (461)
-||.+-|.+..+|+.+.+.- .+.+-|+|...|++.+++.+ ++ ++.||+-++.
T Consensus 180 kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlFDvVIv 240 (448)
T PF05761_consen 180 KYIHKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLFDVVIV 240 (448)
T ss_dssp CCEE--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCECEEEE
T ss_pred HHccCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhheeEEEE
Confidence 46778999999999999775 89999999999999999985 44 4677776665
No 221
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=24.05 E-value=1.2e+02 Score=25.83 Aligned_cols=15 Identities=53% Similarity=0.574 Sum_probs=13.3
Q ss_pred ceEEEEecccccccc
Q 012551 288 SVTLVLDLDETLVHS 302 (461)
Q Consensus 288 K~tLVLDLDeTLVhS 302 (461)
..+|||+=|||.|.+
T Consensus 39 ~~~lvLeeDGT~Vd~ 53 (81)
T cd06537 39 VLTLVLEEDGTAVDS 53 (81)
T ss_pred ceEEEEecCCCEEcc
Confidence 479999999999976
No 222
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=22.44 E-value=1.3e+02 Score=25.34 Aligned_cols=15 Identities=53% Similarity=0.636 Sum_probs=13.4
Q ss_pred ceEEEEecccccccc
Q 012551 288 SVTLVLDLDETLVHS 302 (461)
Q Consensus 288 K~tLVLDLDeTLVhS 302 (461)
..+|||+=|||.|.+
T Consensus 40 ~~~lvL~eDGT~Vd~ 54 (78)
T cd06539 40 LVTLVLEEDGTVVDT 54 (78)
T ss_pred CcEEEEeCCCCEEcc
Confidence 479999999999976
No 223
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=22.17 E-value=50 Score=39.67 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=15.0
Q ss_pred CCceEEEEeccccccccc
Q 012551 286 RKSVTLVLDLDETLVHST 303 (461)
Q Consensus 286 ~kK~tLVLDLDeTLVhSs 303 (461)
.+-+.++|||||||+++.
T Consensus 73 ~~ikaVIFDlDGTLiDS~ 90 (1057)
T PLN02919 73 GKVSAVLFDMDGVLCNSE 90 (1057)
T ss_pred CCCCEEEECCCCCeEeCh
Confidence 344589999999999986
No 224
>PRK10671 copA copper exporting ATPase; Provisional
Probab=21.82 E-value=71 Score=37.12 Aligned_cols=83 Identities=13% Similarity=0.133 Sum_probs=57.0
Q ss_pred eeCchHHHHHHHhh-cccEEEEEcCCChHHHHHHHHHHCCCCCeeeeEEEcccceeeCCceeeeccccCCCCCcEEEEEC
Q 012551 328 KQRPHLKTFLERVA-EMFEVVIFTASQSIYAAQLLDILDPDGKLISRRVYRESCIFSDGTYTKDLTVLGVDLAKVAIIDN 406 (461)
Q Consensus 328 ~~RPgL~eFLe~Ls-k~YEIVIfTas~~~YA~~ILd~LDP~~klf~~RLyRe~C~~~~g~yiKDLs~LgrDLskVVIIDD 406 (461)
..||++.+.|+++. +.+.+++.|...+..|+.+++.++-.. +|.... .. ...+-++.++...++++.|-|
T Consensus 650 ~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~lgi~~-~~~~~~------p~--~K~~~i~~l~~~~~~v~~vGD 720 (834)
T PRK10671 650 PLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGIDE-VIAGVL------PD--GKAEAIKRLQSQGRQVAMVGD 720 (834)
T ss_pred cchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCE-EEeCCC------HH--HHHHHHHHHhhcCCEEEEEeC
Confidence 56999999999997 459999999999999999999988753 332111 00 111223334555678999999
Q ss_pred CchhhccCCCcee
Q 012551 407 SPQVFRLQVNNGI 419 (461)
Q Consensus 407 sp~~~~~qp~NgI 419 (461)
...-...-...++
T Consensus 721 g~nD~~al~~Agv 733 (834)
T PRK10671 721 GINDAPALAQADV 733 (834)
T ss_pred CHHHHHHHHhCCe
Confidence 9865543333444
No 225
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=21.63 E-value=56 Score=30.51 Aligned_cols=16 Identities=19% Similarity=0.466 Sum_probs=12.2
Q ss_pred ceEEEEeccccccccc
Q 012551 288 SVTLVLDLDETLVHST 303 (461)
Q Consensus 288 K~tLVLDLDeTLVhSs 303 (461)
|+.|.+|+||||....
T Consensus 2 ~i~I~iDiDgVLad~~ 17 (191)
T PF06941_consen 2 KIRIAIDIDGVLADFN 17 (191)
T ss_dssp -EEEEEESBTTTB-HH
T ss_pred CcEEEEECCCCCcccH
Confidence 5669999999999764
No 226
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=20.29 E-value=1.5e+02 Score=25.03 Aligned_cols=16 Identities=44% Similarity=0.571 Sum_probs=13.9
Q ss_pred CceEEEEecccccccc
Q 012551 287 KSVTLVLDLDETLVHS 302 (461)
Q Consensus 287 kK~tLVLDLDeTLVhS 302 (461)
...+|||+=|||.|..
T Consensus 41 ~~~~lvL~eDGT~Vdd 56 (80)
T cd06536 41 APITLVLAEDGTIVED 56 (80)
T ss_pred CceEEEEecCCcEEcc
Confidence 4579999999999976
Done!