Query 012553
Match_columns 461
No_of_seqs 250 out of 1305
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 03:51:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012553.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012553hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1257 NADP+-dependent malic 100.0 3E-169 7E-174 1310.0 36.2 414 42-456 20-434 (582)
2 PLN03129 NADP-dependent malic 100.0 7E-163 1E-167 1288.7 39.0 408 49-456 39-446 (581)
3 PRK13529 malate dehydrogenase; 100.0 6E-163 1E-167 1285.5 38.0 407 47-456 12-427 (563)
4 PTZ00317 NADP-dependent malic 100.0 2E-162 5E-167 1280.1 37.9 409 46-456 13-426 (559)
5 COG0281 SfcA Malic enzyme [Ene 100.0 6.2E-89 1.3E-93 699.0 22.3 297 85-449 1-303 (432)
6 PRK12861 malic enzyme; Reviewe 100.0 6.5E-83 1.4E-87 697.5 22.6 259 132-455 34-295 (764)
7 PF00390 malic: Malic enzyme, 100.0 2.5E-84 5.4E-89 606.1 9.1 182 116-297 1-182 (182)
8 PRK12862 malic enzyme; Reviewe 100.0 2.4E-81 5.2E-86 687.8 23.4 259 132-456 38-300 (763)
9 PRK07232 bifunctional malic en 100.0 1E-80 2.2E-85 680.4 23.8 259 132-456 30-292 (752)
10 PF03949 Malic_M: Malic enzyme 100.0 6.7E-51 1.5E-55 398.7 12.1 148 307-456 1-151 (255)
11 cd00762 NAD_bind_malic_enz NAD 100.0 4.1E-50 9E-55 392.8 15.5 148 307-456 1-151 (254)
12 cd05312 NAD_bind_1_malic_enz N 100.0 1.6E-49 3.4E-54 393.3 15.5 148 307-456 1-150 (279)
13 cd05311 NAD_bind_2_malic_enz N 99.9 9.1E-28 2E-32 231.0 13.6 132 307-455 1-135 (226)
14 cd05191 NAD_bind_amino_acid_DH 98.9 1.4E-08 3.1E-13 83.8 11.3 86 309-446 1-86 (86)
15 TIGR01035 hemA glutamyl-tRNA r 97.7 0.00018 4E-09 75.6 9.3 124 308-452 158-283 (417)
16 cd05213 NAD_bind_Glutamyl_tRNA 97.6 0.00037 8E-09 70.4 10.0 139 287-452 139-279 (311)
17 PRK00045 hemA glutamyl-tRNA re 97.5 0.00049 1.1E-08 72.4 9.9 124 309-453 161-287 (423)
18 PRK05476 S-adenosyl-L-homocyst 97.5 0.0014 3E-08 69.8 13.1 149 252-435 105-291 (425)
19 PF01488 Shikimate_DH: Shikima 97.2 0.00021 4.5E-09 63.8 2.8 105 327-453 8-116 (135)
20 PLN00203 glutamyl-tRNA reducta 97.1 0.0014 2.9E-08 71.4 8.4 126 309-454 243-377 (519)
21 PRK14982 acyl-ACP reductase; P 97.1 0.0045 9.8E-08 64.2 11.8 116 310-452 134-252 (340)
22 cd00401 AdoHcyase S-adenosyl-L 97.1 0.0059 1.3E-07 64.9 12.9 117 298-446 162-289 (413)
23 COG0373 HemA Glutamyl-tRNA red 97.1 0.0024 5.2E-08 67.9 9.7 136 286-452 138-280 (414)
24 cd01080 NAD_bind_m-THF_DH_Cycl 97.1 0.0035 7.7E-08 58.7 9.7 91 317-451 30-121 (168)
25 PRK13940 glutamyl-tRNA reducta 96.9 0.0033 7.1E-08 66.6 8.3 114 312-452 163-279 (414)
26 TIGR00936 ahcY adenosylhomocys 96.8 0.021 4.6E-07 60.6 13.5 108 299-435 156-274 (406)
27 PRK09414 glutamate dehydrogena 96.8 0.056 1.2E-06 58.2 16.6 178 253-447 138-345 (445)
28 cd05211 NAD_bind_Glu_Leu_Phe_V 96.7 0.017 3.7E-07 56.2 10.9 122 310-450 2-132 (217)
29 PLN02477 glutamate dehydrogena 96.6 0.083 1.8E-06 56.3 16.5 176 253-448 112-313 (410)
30 PTZ00079 NADP-specific glutama 96.5 0.15 3.2E-06 55.1 18.0 180 253-450 143-358 (454)
31 PRK14031 glutamate dehydrogena 96.5 0.11 2.5E-06 55.9 16.5 179 253-447 134-344 (444)
32 PRK14175 bifunctional 5,10-met 96.4 0.011 2.5E-07 60.0 8.0 97 309-449 136-233 (286)
33 PRK14192 bifunctional 5,10-met 96.3 0.015 3.3E-07 58.8 8.2 85 309-431 137-222 (283)
34 PRK08306 dipicolinate synthase 96.2 0.029 6.4E-07 56.7 9.7 106 313-448 134-244 (296)
35 cd01078 NAD_bind_H4MPT_DH NADP 96.1 0.028 6.1E-07 52.4 8.8 115 310-450 7-133 (194)
36 cd01076 NAD_bind_1_Glu_DH NAD( 96.1 0.042 9E-07 53.8 10.2 122 308-448 8-138 (227)
37 PRK00676 hemA glutamyl-tRNA re 96.1 0.026 5.6E-07 58.7 9.2 126 287-453 136-268 (338)
38 PRK14030 glutamate dehydrogena 96.1 0.32 6.9E-06 52.6 17.3 178 253-447 134-345 (445)
39 PLN02494 adenosylhomocysteinas 96.1 0.048 1E-06 59.2 11.1 119 299-448 215-343 (477)
40 PLN00106 malate dehydrogenase 96.0 0.037 8.1E-07 57.0 9.4 119 316-450 4-139 (323)
41 TIGR02853 spore_dpaA dipicolin 96.0 0.029 6.3E-07 56.6 8.5 113 308-446 128-240 (287)
42 PTZ00075 Adenosylhomocysteinas 95.9 0.11 2.3E-06 56.5 13.0 113 298-435 214-333 (476)
43 PRK12549 shikimate 5-dehydroge 95.9 0.024 5.2E-07 57.0 7.7 91 315-422 111-203 (284)
44 TIGR00518 alaDH alanine dehydr 95.9 0.028 6E-07 58.6 8.4 94 329-446 165-267 (370)
45 cd01075 NAD_bind_Leu_Phe_Val_D 95.8 0.061 1.3E-06 51.4 9.6 112 309-448 4-117 (200)
46 cd05313 NAD_bind_2_Glu_DH NAD( 95.5 0.21 4.6E-06 50.1 12.3 122 309-447 16-155 (254)
47 cd01065 NAD_bind_Shikimate_DH 95.5 0.046 1E-06 48.4 6.9 87 316-422 4-92 (155)
48 TIGR01809 Shik-DH-AROM shikima 95.4 0.035 7.6E-07 55.6 6.4 96 316-431 108-210 (282)
49 cd05212 NAD_bind_m-THF_DH_Cycl 95.3 0.13 2.9E-06 47.1 9.5 83 312-432 9-92 (140)
50 PF00056 Ldh_1_N: lactate/mala 95.3 0.014 3.1E-07 52.7 3.0 110 332-454 1-126 (141)
51 PF00670 AdoHcyase_NAD: S-aden 95.2 0.13 2.7E-06 48.6 9.3 99 308-435 3-102 (162)
52 PF03807 F420_oxidored: NADP o 95.1 0.028 6E-07 46.2 4.1 95 333-448 1-96 (96)
53 PRK05086 malate dehydrogenase; 94.9 0.15 3.2E-06 52.1 9.5 107 332-451 1-123 (312)
54 PRK14191 bifunctional 5,10-met 94.9 0.091 2E-06 53.6 7.9 83 311-431 137-220 (285)
55 cd00650 LDH_MDH_like NAD-depen 94.8 0.051 1.1E-06 53.4 5.8 109 334-452 1-125 (263)
56 cd05197 GH4_glycoside_hydrolas 94.8 0.055 1.2E-06 57.7 6.3 110 332-454 1-151 (425)
57 cd05291 HicDH_like L-2-hydroxy 94.7 0.1 2.3E-06 52.6 7.7 106 333-452 2-123 (306)
58 PRK10792 bifunctional 5,10-met 94.6 0.12 2.6E-06 52.7 7.8 92 311-446 139-231 (285)
59 PRK09424 pntA NAD(P) transhydr 94.5 0.16 3.4E-06 55.7 8.9 102 328-448 162-287 (509)
60 PF00208 ELFV_dehydrog: Glutam 94.5 0.12 2.5E-06 51.3 7.3 128 305-448 5-149 (244)
61 cd01079 NAD_bind_m-THF_DH NAD 94.4 0.24 5.2E-06 48.2 9.1 104 312-432 34-148 (197)
62 PTZ00117 malate dehydrogenase; 94.4 0.17 3.7E-06 51.7 8.5 112 330-457 4-132 (319)
63 TIGR02356 adenyl_thiF thiazole 94.3 0.06 1.3E-06 51.4 4.8 104 327-446 17-144 (202)
64 PF01210 NAD_Gly3P_dh_N: NAD-d 94.3 0.057 1.2E-06 49.3 4.4 91 333-443 1-101 (157)
65 PF02826 2-Hacid_dh_C: D-isome 94.2 0.25 5.4E-06 45.9 8.6 108 322-457 27-138 (178)
66 TIGR00561 pntA NAD(P) transhyd 94.0 0.48 1.1E-05 52.0 11.6 167 237-435 80-276 (511)
67 PTZ00325 malate dehydrogenase; 94.0 0.27 6E-06 50.7 9.1 110 329-452 6-131 (321)
68 PRK14189 bifunctional 5,10-met 93.8 0.22 4.9E-06 50.8 7.9 84 311-432 138-222 (285)
69 PRK00257 erythronate-4-phospha 93.8 0.65 1.4E-05 49.1 11.5 53 310-374 95-147 (381)
70 PTZ00082 L-lactate dehydrogena 93.6 0.18 3.9E-06 51.7 7.0 107 331-453 6-135 (321)
71 PLN02928 oxidoreductase family 93.6 0.66 1.4E-05 48.2 11.0 120 308-446 120-262 (347)
72 cd01487 E1_ThiF_like E1_ThiF_l 93.5 0.14 3.1E-06 47.8 5.6 97 333-444 1-120 (174)
73 PRK14194 bifunctional 5,10-met 93.4 0.3 6.4E-06 50.3 8.1 92 311-446 139-231 (301)
74 PRK06223 malate dehydrogenase; 93.4 0.17 3.7E-06 50.6 6.3 100 332-452 3-125 (307)
75 PRK14178 bifunctional 5,10-met 93.3 0.22 4.8E-06 50.7 7.0 84 310-431 131-215 (279)
76 PRK00066 ldh L-lactate dehydro 93.2 0.25 5.4E-06 50.5 7.3 108 331-452 6-128 (315)
77 PRK14176 bifunctional 5,10-met 93.2 0.35 7.6E-06 49.4 8.2 85 310-432 143-228 (287)
78 PRK08605 D-lactate dehydrogena 93.2 0.49 1.1E-05 48.6 9.3 92 326-446 141-236 (332)
79 cd05296 GH4_P_beta_glucosidase 93.0 0.19 4E-06 53.6 6.1 110 332-452 1-150 (419)
80 PRK08223 hypothetical protein; 93.0 0.18 3.9E-06 51.5 5.7 124 290-444 4-150 (287)
81 PRK12749 quinate/shikimate deh 92.9 0.23 5E-06 50.2 6.4 50 315-375 108-157 (288)
82 PRK08293 3-hydroxybutyryl-CoA 92.9 0.11 2.4E-06 51.6 4.0 99 332-452 4-124 (287)
83 PRK12475 thiamine/molybdopteri 92.8 0.13 2.9E-06 53.1 4.6 102 327-444 20-147 (338)
84 PRK08328 hypothetical protein; 92.8 0.066 1.4E-06 52.2 2.2 54 293-375 7-60 (231)
85 PRK15438 erythronate-4-phospha 92.4 1.1 2.5E-05 47.3 11.0 54 309-374 94-147 (378)
86 PRK08762 molybdopterin biosynt 92.4 0.2 4.3E-06 52.1 5.3 102 327-444 131-256 (376)
87 cd00757 ThiF_MoeB_HesA_family 92.3 0.41 9E-06 46.3 7.0 102 327-444 17-142 (228)
88 cd05298 GH4_GlvA_pagL_like Gly 92.2 0.24 5.2E-06 53.2 5.8 108 332-452 1-149 (437)
89 PRK14027 quinate/shikimate deh 92.2 0.3 6.5E-06 49.4 6.1 49 316-375 112-160 (283)
90 TIGR02355 moeB molybdopterin s 92.1 0.43 9.2E-06 47.1 7.0 104 327-445 20-146 (240)
91 PRK14190 bifunctional 5,10-met 92.1 0.53 1.2E-05 48.1 7.8 83 311-431 138-221 (284)
92 PRK14184 bifunctional 5,10-met 92.0 0.46 1E-05 48.6 7.3 87 311-431 137-224 (286)
93 PF01262 AlaDh_PNT_C: Alanine 91.8 0.051 1.1E-06 50.1 0.1 90 329-435 18-131 (168)
94 PRK14183 bifunctional 5,10-met 91.8 0.64 1.4E-05 47.5 7.9 85 310-432 136-221 (281)
95 PRK09260 3-hydroxybutyryl-CoA 91.7 0.18 3.9E-06 50.1 3.8 32 332-375 2-33 (288)
96 cd00704 MDH Malate dehydrogena 91.6 0.78 1.7E-05 47.3 8.5 113 333-452 2-132 (323)
97 cd01337 MDH_glyoxysomal_mitoch 91.6 0.76 1.7E-05 47.2 8.4 105 333-452 2-123 (310)
98 PRK12548 shikimate 5-dehydroge 91.4 0.44 9.6E-06 47.9 6.4 50 315-375 110-159 (289)
99 PRK14179 bifunctional 5,10-met 91.4 0.71 1.5E-05 47.2 7.8 83 311-431 138-221 (284)
100 PRK07688 thiamine/molybdopteri 91.3 0.24 5.2E-06 51.3 4.4 104 327-446 20-149 (339)
101 PRK00258 aroE shikimate 5-dehy 91.2 0.52 1.1E-05 47.0 6.5 88 315-422 106-196 (278)
102 PRK14177 bifunctional 5,10-met 91.0 0.9 1.9E-05 46.5 8.1 83 312-432 140-223 (284)
103 PF00899 ThiF: ThiF family; I 90.8 0.43 9.3E-06 42.1 5.0 103 330-447 1-126 (135)
104 COG0111 SerA Phosphoglycerate 90.6 1.8 4E-05 44.8 10.0 110 300-434 90-224 (324)
105 PRK05690 molybdopterin biosynt 90.5 0.77 1.7E-05 45.3 7.0 105 327-447 28-156 (245)
106 PRK14188 bifunctional 5,10-met 90.5 0.84 1.8E-05 46.9 7.4 83 311-431 138-221 (296)
107 PRK14172 bifunctional 5,10-met 90.5 1.1 2.4E-05 45.7 8.2 84 311-432 138-222 (278)
108 PF02882 THF_DHG_CYH_C: Tetrah 90.5 1.2 2.6E-05 41.8 7.9 84 311-432 16-100 (160)
109 COG0169 AroE Shikimate 5-dehyd 90.4 0.59 1.3E-05 47.6 6.2 47 317-374 110-158 (283)
110 TIGR02992 ectoine_eutC ectoine 90.4 0.61 1.3E-05 47.7 6.4 99 310-432 113-216 (326)
111 cd01336 MDH_cytoplasmic_cytoso 90.3 2 4.3E-05 44.3 10.0 114 332-453 3-135 (325)
112 PRK14174 bifunctional 5,10-met 90.3 0.89 1.9E-05 46.7 7.4 86 312-431 140-226 (295)
113 PLN02516 methylenetetrahydrofo 90.2 1.1 2.5E-05 46.0 8.1 85 310-432 146-231 (299)
114 PRK14193 bifunctional 5,10-met 90.0 1.2 2.5E-05 45.7 7.9 86 311-432 138-224 (284)
115 PRK07574 formate dehydrogenase 90.0 3.9 8.5E-05 43.4 12.1 97 326-449 187-287 (385)
116 PRK14171 bifunctional 5,10-met 90.0 1.2 2.7E-05 45.6 8.1 86 309-432 137-223 (288)
117 PRK14168 bifunctional 5,10-met 90.0 1.3 2.7E-05 45.7 8.2 90 309-432 139-229 (297)
118 PRK15076 alpha-galactosidase; 89.8 0.73 1.6E-05 49.3 6.6 110 332-453 2-154 (431)
119 PRK14187 bifunctional 5,10-met 89.8 1.4 2.9E-05 45.4 8.2 84 311-432 140-224 (294)
120 PLN02306 hydroxypyruvate reduc 89.6 2.1 4.5E-05 45.4 9.7 120 297-435 107-264 (386)
121 PRK14619 NAD(P)H-dependent gly 89.6 1.8 3.9E-05 43.6 8.9 33 331-375 4-36 (308)
122 PRK14170 bifunctional 5,10-met 89.6 1.4 3E-05 45.1 8.1 85 310-432 136-221 (284)
123 TIGR01772 MDH_euk_gproteo mala 89.5 2.1 4.6E-05 44.0 9.5 104 333-451 1-121 (312)
124 PRK07634 pyrroline-5-carboxyla 89.5 0.98 2.1E-05 43.2 6.7 23 330-352 3-25 (245)
125 PRK14166 bifunctional 5,10-met 89.5 1.4 3.1E-05 45.0 8.1 86 309-432 135-221 (282)
126 cd05297 GH4_alpha_glucosidase_ 89.4 0.87 1.9E-05 48.4 6.8 109 332-452 1-151 (423)
127 cd01339 LDH-like_MDH L-lactate 89.4 0.69 1.5E-05 46.4 5.7 100 334-452 1-121 (300)
128 PRK05600 thiamine biosynthesis 89.3 0.98 2.1E-05 47.4 7.0 102 327-444 37-162 (370)
129 COG0334 GdhA Glutamate dehydro 88.8 11 0.00025 40.5 14.4 168 252-435 111-305 (411)
130 PRK05597 molybdopterin biosynt 88.8 1.1 2.4E-05 46.6 6.9 103 327-445 24-150 (355)
131 PRK07066 3-hydroxybutyryl-CoA 88.7 1 2.2E-05 46.5 6.5 46 405-452 104-149 (321)
132 PTZ00345 glycerol-3-phosphate 88.6 1.7 3.7E-05 45.7 8.1 23 330-352 10-32 (365)
133 PF01113 DapB_N: Dihydrodipico 88.6 2.3 5.1E-05 37.5 7.9 35 332-376 1-36 (124)
134 TIGR02354 thiF_fam2 thiamine b 88.5 0.53 1.2E-05 45.2 4.1 38 327-375 17-54 (200)
135 PRK06129 3-hydroxyacyl-CoA deh 88.4 0.42 9.2E-06 48.1 3.4 32 332-375 3-34 (308)
136 TIGR01915 npdG NADPH-dependent 88.4 1.1 2.3E-05 43.0 6.0 96 333-451 2-106 (219)
137 cd05293 LDH_1 A subgroup of L- 88.3 1.3 2.9E-05 45.3 7.0 106 332-452 4-126 (312)
138 TIGR01763 MalateDH_bact malate 88.3 1.2 2.6E-05 45.4 6.6 107 332-453 2-125 (305)
139 PRK14185 bifunctional 5,10-met 88.2 2.1 4.6E-05 44.0 8.3 88 311-432 137-225 (293)
140 PRK08374 homoserine dehydrogen 88.1 3.1 6.6E-05 43.1 9.5 84 332-421 3-101 (336)
141 PRK06522 2-dehydropantoate 2-r 88.1 1.6 3.5E-05 42.8 7.2 99 333-448 2-102 (304)
142 PRK15317 alkyl hydroperoxide r 88.1 0.74 1.6E-05 49.7 5.2 74 279-352 148-232 (517)
143 PRK00094 gpsA NAD(P)H-dependen 88.0 0.84 1.8E-05 45.3 5.2 99 333-447 3-106 (325)
144 TIGR03140 AhpF alkyl hydropero 88.0 0.77 1.7E-05 49.5 5.3 86 264-352 137-233 (515)
145 PRK12921 2-dehydropantoate 2-r 88.0 1.2 2.7E-05 43.8 6.4 99 333-448 2-104 (305)
146 PRK12550 shikimate 5-dehydroge 87.8 1.2 2.5E-05 44.9 6.1 48 316-375 108-155 (272)
147 COG0686 Ald Alanine dehydrogen 87.7 0.65 1.4E-05 48.6 4.3 86 329-435 166-260 (371)
148 TIGR00872 gnd_rel 6-phosphoglu 87.7 1.1 2.4E-05 45.1 5.8 93 333-449 2-96 (298)
149 PRK07411 hypothetical protein; 87.6 1.4 3E-05 46.5 6.8 102 327-444 34-159 (390)
150 cd05290 LDH_3 A subgroup of L- 87.6 1.5 3.2E-05 44.9 6.8 105 333-452 1-125 (307)
151 PRK06436 glycerate dehydrogena 87.5 6.2 0.00013 40.4 11.3 38 326-375 117-154 (303)
152 PRK14169 bifunctional 5,10-met 87.4 2.5 5.3E-05 43.3 8.2 85 310-432 135-220 (282)
153 PRK13243 glyoxylate reductase; 87.3 5.8 0.00013 40.9 11.0 38 326-375 145-182 (333)
154 PRK08410 2-hydroxyacid dehydro 87.1 5.8 0.00013 40.5 10.8 67 298-376 85-178 (311)
155 cd01338 MDH_choloroplast_like 87.1 3.4 7.4E-05 42.6 9.1 114 332-453 3-135 (322)
156 PRK08644 thiamine biosynthesis 86.9 0.72 1.6E-05 44.6 3.9 103 327-445 24-150 (212)
157 PRK08291 ectoine utilization p 86.9 1.3 2.9E-05 45.3 6.0 94 317-431 120-218 (330)
158 TIGR01759 MalateDH-SF1 malate 86.8 3.3 7.1E-05 42.8 8.9 113 332-452 4-135 (323)
159 PRK14180 bifunctional 5,10-met 86.8 2.7 5.8E-05 43.0 8.1 86 309-432 136-222 (282)
160 PRK14173 bifunctional 5,10-met 86.8 2.7 5.8E-05 43.1 8.1 84 311-432 135-219 (287)
161 PRK06130 3-hydroxybutyryl-CoA 86.7 1.7 3.7E-05 43.4 6.6 31 332-374 5-35 (311)
162 PF07992 Pyr_redox_2: Pyridine 86.5 1.1 2.3E-05 40.7 4.6 32 333-376 1-32 (201)
163 PRK14182 bifunctional 5,10-met 86.3 3.1 6.8E-05 42.6 8.3 84 311-432 137-221 (282)
164 PRK14181 bifunctional 5,10-met 86.3 3.3 7.2E-05 42.5 8.5 90 309-432 131-221 (287)
165 PRK12480 D-lactate dehydrogena 86.2 6.9 0.00015 40.4 10.8 38 326-375 141-178 (330)
166 KOG0029 Amine oxidase [Seconda 86.2 0.36 7.9E-06 52.6 1.6 36 330-368 14-49 (501)
167 PRK06487 glycerate dehydrogena 86.1 5 0.00011 41.1 9.7 66 298-375 88-180 (317)
168 cd01485 E1-1_like Ubiquitin ac 86.1 0.72 1.6E-05 44.0 3.4 39 327-376 15-53 (198)
169 PLN02616 tetrahydrofolate dehy 86.0 2.8 6E-05 44.5 7.9 84 311-432 211-295 (364)
170 PRK14167 bifunctional 5,10-met 85.9 3.4 7.3E-05 42.6 8.3 88 311-432 137-225 (297)
171 PRK11880 pyrroline-5-carboxyla 85.9 2.1 4.5E-05 41.7 6.6 35 332-375 3-37 (267)
172 PRK05442 malate dehydrogenase; 85.5 5.4 0.00012 41.3 9.6 114 332-453 5-137 (326)
173 PRK07680 late competence prote 85.4 1.9 4.1E-05 42.5 6.1 100 333-452 2-102 (273)
174 cd00300 LDH_like L-lactate deh 85.4 2.1 4.6E-05 43.3 6.6 106 334-453 1-122 (300)
175 COG0345 ProC Pyrroline-5-carbo 85.1 2.5 5.4E-05 42.9 6.8 35 332-375 2-37 (266)
176 PRK15469 ghrA bifunctional gly 85.1 5 0.00011 41.2 9.1 36 327-374 132-167 (312)
177 PRK12439 NAD(P)H-dependent gly 85.0 1.3 2.9E-05 45.4 5.0 22 331-352 7-28 (341)
178 cd05292 LDH_2 A subgroup of L- 85.0 2.4 5.3E-05 43.0 6.8 106 333-452 2-122 (308)
179 PRK13581 D-3-phosphoglycerate 84.9 7.8 0.00017 42.5 11.1 66 298-375 86-172 (526)
180 TIGR01408 Ube1 ubiquitin-activ 84.8 0.49 1.1E-05 55.8 1.9 43 327-375 415-457 (1008)
181 PRK14851 hypothetical protein; 84.8 3 6.4E-05 47.4 7.9 106 327-446 39-168 (679)
182 cd05294 LDH-like_MDH_nadp A la 84.6 5.9 0.00013 40.4 9.4 111 332-456 1-131 (309)
183 cd01492 Aos1_SUMO Ubiquitin ac 84.6 0.86 1.9E-05 43.5 3.2 39 327-376 17-55 (197)
184 PRK09310 aroDE bifunctional 3- 84.5 2 4.3E-05 46.5 6.2 47 316-374 317-363 (477)
185 TIGR00507 aroE shikimate 5-deh 84.5 2.3 4.9E-05 42.1 6.2 48 315-374 101-148 (270)
186 COG1486 CelF Alpha-galactosida 84.3 1.3 2.7E-05 48.0 4.6 111 330-452 2-152 (442)
187 KOG0685 Flavin-containing amin 84.3 0.51 1.1E-05 51.4 1.6 26 327-352 17-42 (498)
188 PRK11790 D-3-phosphoglycerate 84.3 11 0.00024 40.1 11.6 73 291-375 90-183 (409)
189 TIGR01758 MDH_euk_cyt malate d 84.2 5.8 0.00012 41.0 9.1 112 333-453 1-132 (324)
190 PRK09599 6-phosphogluconate de 83.7 5.7 0.00012 39.9 8.7 93 333-449 2-97 (301)
191 PRK14618 NAD(P)H-dependent gly 83.7 1.3 2.8E-05 44.7 4.2 32 332-375 5-36 (328)
192 PRK14620 NAD(P)H-dependent gly 83.5 2.6 5.5E-05 42.6 6.2 31 333-375 2-32 (326)
193 PRK14186 bifunctional 5,10-met 83.5 4.9 0.00011 41.5 8.2 84 311-432 138-222 (297)
194 PF02056 Glyco_hydro_4: Family 83.5 1.6 3.4E-05 42.0 4.4 108 333-452 1-150 (183)
195 PLN03139 formate dehydrogenase 83.2 8.2 0.00018 41.0 10.0 86 326-435 194-283 (386)
196 TIGR01327 PGDH D-3-phosphoglyc 83.2 9.2 0.0002 41.9 10.7 66 298-375 84-170 (525)
197 PRK15409 bifunctional glyoxyla 83.0 4.9 0.00011 41.4 8.1 26 326-351 140-165 (323)
198 PLN02602 lactate dehydrogenase 83.0 3.6 7.7E-05 43.1 7.1 106 332-453 38-161 (350)
199 PLN02897 tetrahydrofolate dehy 83.0 4.5 9.7E-05 42.6 7.8 84 311-432 194-278 (345)
200 cd01483 E1_enzyme_family Super 82.8 1.7 3.8E-05 38.5 4.2 101 333-448 1-124 (143)
201 PRK06932 glycerate dehydrogena 82.5 13 0.00028 38.2 10.8 37 327-375 143-179 (314)
202 cd00755 YgdL_like Family of ac 82.5 1.5 3.3E-05 43.2 4.0 105 327-446 7-135 (231)
203 PLN02819 lysine-ketoglutarate 81.8 7.9 0.00017 46.2 10.1 115 316-436 179-327 (1042)
204 PF01494 FAD_binding_3: FAD bi 81.6 2 4.3E-05 41.8 4.4 35 332-378 2-36 (356)
205 TIGR01381 E1_like_apg7 E1-like 80.9 1.6 3.5E-05 49.3 4.0 40 327-377 334-373 (664)
206 PRK07530 3-hydroxybutyryl-CoA 80.8 4.1 8.8E-05 40.5 6.4 32 332-375 5-36 (292)
207 TIGR01771 L-LDH-NAD L-lactate 80.7 3.3 7.1E-05 42.2 5.8 105 336-452 1-119 (299)
208 PRK06035 3-hydroxyacyl-CoA deh 80.7 4.3 9.4E-05 40.4 6.6 32 332-375 4-35 (291)
209 COG5322 Predicted dehydrogenas 80.7 2.6 5.6E-05 43.6 5.0 45 308-352 144-189 (351)
210 PRK06141 ornithine cyclodeamin 80.6 3.5 7.5E-05 42.0 5.9 83 330-431 124-210 (314)
211 KOG0069 Glyoxylate/hydroxypyru 80.4 9.7 0.00021 40.0 9.2 44 309-352 120-183 (336)
212 PRK15116 sulfur acceptor prote 80.2 2.2 4.7E-05 43.2 4.3 117 327-457 26-170 (268)
213 PF13738 Pyr_redox_3: Pyridine 79.6 2.1 4.5E-05 39.1 3.6 30 335-375 1-30 (203)
214 PRK07679 pyrroline-5-carboxyla 79.6 7.7 0.00017 38.4 7.9 36 331-374 3-38 (279)
215 COG0190 FolD 5,10-methylene-te 79.5 5.3 0.00011 41.1 6.8 118 277-432 92-220 (283)
216 PF03446 NAD_binding_2: NAD bi 79.5 2.9 6.2E-05 38.2 4.5 91 332-448 2-96 (163)
217 PF00070 Pyr_redox: Pyridine n 79.2 3.9 8.5E-05 32.8 4.7 35 333-379 1-35 (80)
218 PRK02842 light-independent pro 79.0 9.6 0.00021 40.5 8.8 88 318-420 277-369 (427)
219 PRK08229 2-dehydropantoate 2-r 78.9 4.7 0.0001 40.6 6.2 32 332-375 3-34 (341)
220 PRK07878 molybdopterin biosynt 78.4 2 4.3E-05 45.3 3.5 102 327-444 38-163 (392)
221 COG0039 Mdh Malate/lactate deh 78.1 5.9 0.00013 41.2 6.7 107 332-453 1-125 (313)
222 PF02737 3HCDH_N: 3-hydroxyacy 78.0 3.3 7.1E-05 38.9 4.5 31 333-375 1-31 (180)
223 PLN02520 bifunctional 3-dehydr 77.9 4.9 0.00011 44.1 6.4 48 316-375 354-411 (529)
224 TIGR01292 TRX_reduct thioredox 77.7 2.6 5.7E-05 40.5 3.9 31 333-375 2-32 (300)
225 TIGR03376 glycerol3P_DH glycer 77.7 3.7 8E-05 42.8 5.2 20 333-352 1-20 (342)
226 PRK07502 cyclohexadienyl dehyd 77.6 13 0.00028 37.4 8.8 34 332-375 7-40 (307)
227 COG1052 LdhA Lactate dehydroge 77.4 11 0.00024 39.1 8.5 41 324-376 139-179 (324)
228 PRK07231 fabG 3-ketoacyl-(acyl 77.2 5.2 0.00011 37.4 5.6 36 328-375 2-38 (251)
229 PRK12490 6-phosphogluconate de 77.1 12 0.00027 37.5 8.6 94 333-450 2-98 (299)
230 cd01491 Ube1_repeat1 Ubiquitin 77.1 2.4 5.1E-05 43.3 3.5 38 327-375 15-52 (286)
231 PRK09754 phenylpropionate diox 76.8 3.5 7.6E-05 42.7 4.7 36 330-375 2-37 (396)
232 PRK07340 ornithine cyclodeamin 76.8 11 0.00024 38.3 8.3 80 329-427 123-205 (304)
233 PRK06270 homoserine dehydrogen 76.1 23 0.0005 36.6 10.4 105 332-443 3-123 (341)
234 PLN02545 3-hydroxybutyryl-CoA 75.9 8.1 0.00018 38.5 6.9 32 332-375 5-36 (295)
235 PTZ00142 6-phosphogluconate de 75.9 4.7 0.0001 43.8 5.6 97 333-449 3-104 (470)
236 PTZ00431 pyrroline carboxylate 75.8 12 0.00026 36.9 7.9 105 330-450 2-117 (260)
237 PLN02688 pyrroline-5-carboxyla 75.3 13 0.00029 36.1 8.0 34 333-374 2-36 (266)
238 TIGR02028 ChlP geranylgeranyl 75.1 3.3 7.1E-05 43.2 4.0 20 333-352 2-21 (398)
239 PRK11883 protoporphyrinogen ox 74.4 2.1 4.6E-05 44.0 2.4 22 332-353 1-22 (451)
240 PF05834 Lycopene_cycl: Lycope 74.4 3.9 8.4E-05 42.3 4.3 35 334-378 2-36 (374)
241 TIGR02023 BchP-ChlP geranylger 74.4 3.6 7.7E-05 42.3 4.0 20 333-352 2-21 (388)
242 TIGR02622 CDP_4_6_dhtase CDP-g 74.1 8.3 0.00018 38.8 6.5 106 329-446 2-127 (349)
243 PRK06928 pyrroline-5-carboxyla 74.1 12 0.00026 37.3 7.5 36 332-375 2-37 (277)
244 TIGR00873 gnd 6-phosphoglucona 73.9 8 0.00017 42.0 6.7 97 333-449 1-101 (467)
245 PRK06153 hypothetical protein; 73.9 2.9 6.4E-05 44.7 3.3 38 327-375 172-209 (393)
246 PRK06407 ornithine cyclodeamin 73.6 9.1 0.0002 39.0 6.7 84 330-432 116-204 (301)
247 cd01484 E1-2_like Ubiquitin ac 73.2 4.5 9.8E-05 40.0 4.3 98 333-446 1-124 (234)
248 PRK06249 2-dehydropantoate 2-r 72.7 10 0.00023 38.2 6.8 24 330-353 4-27 (313)
249 PRK12429 3-hydroxybutyrate deh 72.2 12 0.00026 35.1 6.7 35 329-375 2-37 (258)
250 PRK07877 hypothetical protein; 72.2 7.7 0.00017 44.5 6.3 110 327-451 103-234 (722)
251 PLN02172 flavin-containing mon 72.2 4.9 0.00011 43.2 4.6 25 328-352 7-31 (461)
252 PRK06847 hypothetical protein; 71.8 4.9 0.00011 40.5 4.3 22 331-352 4-25 (375)
253 TIGR00465 ilvC ketol-acid redu 71.7 15 0.00032 38.0 7.7 25 329-353 1-25 (314)
254 PRK11730 fadB multifunctional 71.7 13 0.00029 42.3 8.0 43 408-452 416-458 (715)
255 cd01486 Apg7 Apg7 is an E1-lik 71.7 5 0.00011 41.6 4.3 32 333-375 1-32 (307)
256 PRK06476 pyrroline-5-carboxyla 71.7 11 0.00025 36.7 6.7 33 333-374 2-34 (258)
257 PLN00112 malate dehydrogenase 71.6 14 0.00031 40.1 7.9 119 331-454 100-234 (444)
258 PRK07531 bifunctional 3-hydrox 71.4 5.7 0.00012 43.1 4.9 31 332-374 5-35 (495)
259 PF03447 NAD_binding_3: Homose 71.3 8.8 0.00019 32.9 5.1 88 338-443 1-88 (117)
260 PRK01713 ornithine carbamoyltr 71.1 28 0.0006 36.3 9.6 136 262-419 91-233 (334)
261 PRK09564 coenzyme A disulfide 71.0 5.5 0.00012 41.5 4.5 36 332-377 1-36 (444)
262 COG0499 SAM1 S-adenosylhomocys 70.8 14 0.0003 39.7 7.3 103 304-435 185-288 (420)
263 PRK12409 D-amino acid dehydrog 70.7 5.4 0.00012 41.0 4.3 33 332-376 2-34 (410)
264 cd01488 Uba3_RUB Ubiquitin act 70.5 5.4 0.00012 40.9 4.2 32 333-375 1-32 (291)
265 COG0644 FixC Dehydrogenases (f 70.3 5.6 0.00012 41.3 4.4 36 332-379 4-39 (396)
266 PF13454 NAD_binding_9: FAD-NA 70.1 5.1 0.00011 36.3 3.6 36 335-377 1-36 (156)
267 PRK08163 salicylate hydroxylas 69.9 5.5 0.00012 40.5 4.1 22 331-352 4-25 (396)
268 PRK05479 ketol-acid reductoiso 69.8 17 0.00036 38.0 7.7 25 328-352 14-38 (330)
269 TIGR03693 ocin_ThiF_like putat 69.8 21 0.00045 40.6 8.8 153 256-443 68-236 (637)
270 TIGR01214 rmlD dTDP-4-dehydror 69.7 18 0.0004 34.8 7.5 59 333-421 1-60 (287)
271 PRK04176 ribulose-1,5-biphosph 69.7 5.5 0.00012 39.5 4.0 34 330-375 24-57 (257)
272 PRK06184 hypothetical protein; 69.7 5.6 0.00012 42.5 4.3 34 330-375 2-35 (502)
273 PRK08618 ornithine cyclodeamin 69.6 11 0.00024 38.5 6.3 81 330-430 126-211 (325)
274 KOG2304 3-hydroxyacyl-CoA dehy 69.5 4 8.7E-05 41.4 2.9 32 332-375 12-43 (298)
275 PRK12771 putative glutamate sy 69.4 9 0.00019 41.9 5.9 36 328-375 134-169 (564)
276 PF01266 DAO: FAD dependent ox 69.3 7.3 0.00016 37.9 4.7 33 333-377 1-33 (358)
277 PRK07364 2-octaprenyl-6-methox 69.2 5.2 0.00011 41.0 3.8 22 331-352 18-39 (415)
278 TIGR01790 carotene-cycl lycope 69.2 5.5 0.00012 40.5 4.0 19 334-352 2-20 (388)
279 PRK07236 hypothetical protein; 68.9 6.7 0.00015 40.2 4.6 24 329-352 4-27 (386)
280 PRK06718 precorrin-2 dehydroge 68.8 7 0.00015 37.6 4.4 35 328-374 7-41 (202)
281 TIGR03169 Nterm_to_SelD pyridi 68.5 3.4 7.3E-05 41.8 2.3 37 333-378 1-37 (364)
282 KOG1495 Lactate dehydrogenase 68.3 19 0.00041 37.4 7.5 112 327-453 16-144 (332)
283 TIGR03366 HpnZ_proposed putati 68.2 16 0.00035 35.7 6.9 47 316-374 107-153 (280)
284 cd01489 Uba2_SUMO Ubiquitin ac 67.8 7.2 0.00016 40.4 4.5 33 333-376 1-33 (312)
285 PRK06719 precorrin-2 dehydroge 67.7 7.8 0.00017 35.8 4.3 26 328-353 10-35 (157)
286 COG0240 GpsA Glycerol-3-phosph 67.5 9.4 0.0002 40.0 5.3 83 332-435 2-93 (329)
287 PRK06475 salicylate hydroxylas 67.4 5.9 0.00013 40.8 3.8 21 332-352 3-23 (400)
288 PRK09126 hypothetical protein; 67.2 6.6 0.00014 39.9 4.1 22 331-352 3-24 (392)
289 TIGR02032 GG-red-SF geranylger 67.0 7 0.00015 37.2 4.0 31 333-375 2-32 (295)
290 PRK12769 putative oxidoreducta 66.9 7.1 0.00015 43.6 4.5 34 330-375 326-359 (654)
291 PF03435 Saccharop_dh: Sacchar 66.9 3.1 6.7E-05 42.9 1.7 81 334-435 1-89 (386)
292 PRK07233 hypothetical protein; 66.8 6.1 0.00013 40.3 3.7 31 333-375 1-31 (434)
293 PLN02527 aspartate carbamoyltr 66.7 1E+02 0.0022 31.8 12.5 136 263-421 87-228 (306)
294 KOG2337 Ubiquitin activating E 66.7 5.2 0.00011 44.5 3.3 38 329-377 338-375 (669)
295 cd08237 ribitol-5-phosphate_DH 66.3 27 0.00059 35.3 8.2 35 330-374 163-197 (341)
296 PRK12491 pyrroline-5-carboxyla 66.2 16 0.00034 36.7 6.4 35 332-374 3-37 (272)
297 TIGR02437 FadB fatty oxidation 66.2 21 0.00046 40.8 8.2 43 408-452 416-458 (714)
298 COG1250 FadB 3-hydroxyacyl-CoA 66.1 20 0.00043 37.3 7.2 46 405-452 103-148 (307)
299 TIGR01470 cysG_Nterm siroheme 66.0 8.8 0.00019 37.0 4.4 26 328-353 6-31 (205)
300 PLN00093 geranylgeranyl diphos 66.0 6.9 0.00015 41.9 4.1 21 332-352 40-60 (450)
301 PRK15181 Vi polysaccharide bio 66.0 26 0.00056 35.5 8.0 104 325-445 9-140 (348)
302 COG0569 TrkA K+ transport syst 65.9 8.6 0.00019 37.5 4.4 94 332-444 1-98 (225)
303 PRK07045 putative monooxygenas 65.8 7.6 0.00017 39.6 4.2 21 332-352 6-26 (388)
304 PF13450 NAD_binding_8: NAD(P) 65.6 9 0.00019 30.5 3.7 30 336-377 1-30 (68)
305 PRK12810 gltD glutamate syntha 65.6 8.2 0.00018 41.2 4.6 34 330-375 142-175 (471)
306 TIGR01316 gltA glutamate synth 65.6 8.6 0.00019 40.9 4.7 36 328-375 130-165 (449)
307 PLN02268 probable polyamine ox 65.6 3.4 7.4E-05 42.9 1.7 20 333-352 2-21 (435)
308 PRK06753 hypothetical protein; 65.5 7.5 0.00016 39.2 4.1 20 333-352 2-21 (373)
309 PRK10886 DnaA initiator-associ 65.3 33 0.00072 33.1 8.2 104 329-447 39-145 (196)
310 PF02423 OCD_Mu_crystall: Orni 65.0 12 0.00025 38.3 5.4 83 331-432 128-216 (313)
311 PRK07608 ubiquinone biosynthes 65.0 7.3 0.00016 39.4 3.9 21 332-352 6-26 (388)
312 PF01946 Thi4: Thi4 family; PD 64.9 9.5 0.00021 38.2 4.5 35 330-376 16-50 (230)
313 PRK10157 putative oxidoreducta 64.5 7.5 0.00016 41.0 4.0 21 332-352 6-26 (428)
314 TIGR02279 PaaC-3OHAcCoADH 3-hy 64.3 21 0.00045 39.2 7.4 34 330-375 4-37 (503)
315 PRK14806 bifunctional cyclohex 64.3 25 0.00054 39.7 8.2 34 332-375 4-37 (735)
316 PRK09880 L-idonate 5-dehydroge 64.2 14 0.00031 37.1 5.7 45 318-374 158-202 (343)
317 PRK07417 arogenate dehydrogena 63.9 22 0.00047 35.3 6.9 96 333-450 2-119 (279)
318 PF00743 FMO-like: Flavin-bind 63.8 8.2 0.00018 42.5 4.2 21 332-352 2-22 (531)
319 TIGR01181 dTDP_gluc_dehyt dTDP 63.7 32 0.0007 33.1 7.9 78 333-422 1-84 (317)
320 PLN02852 ferredoxin-NADP+ redu 63.5 6.6 0.00014 43.0 3.4 42 324-375 19-60 (491)
321 TIGR01283 nifE nitrogenase mol 63.4 17 0.00038 38.9 6.5 85 319-419 314-403 (456)
322 PLN02463 lycopene beta cyclase 63.0 8.4 0.00018 41.4 4.1 21 332-352 29-49 (447)
323 TIGR00292 thiazole biosynthesi 62.9 8.7 0.00019 38.2 3.9 35 330-376 20-54 (254)
324 PRK11154 fadJ multifunctional 62.7 86 0.0019 35.9 12.1 43 408-452 413-455 (708)
325 PRK08773 2-octaprenyl-3-methyl 62.7 7.7 0.00017 39.7 3.6 33 331-375 6-38 (392)
326 TIGR01984 UbiH 2-polyprenyl-6- 62.6 7.8 0.00017 39.2 3.6 20 334-353 2-21 (382)
327 TIGR01988 Ubi-OHases Ubiquinon 62.4 8.6 0.00019 38.6 3.8 19 334-352 2-20 (385)
328 PRK05732 2-octaprenyl-6-methox 62.4 11 0.00023 38.3 4.5 22 331-352 3-24 (395)
329 COG0654 UbiH 2-polyprenyl-6-me 62.2 9.4 0.0002 39.4 4.1 41 331-383 2-44 (387)
330 PRK07819 3-hydroxybutyryl-CoA 62.2 10 0.00022 38.1 4.3 39 411-451 112-150 (286)
331 PRK11749 dihydropyrimidine deh 62.1 10 0.00022 40.1 4.5 34 330-375 139-172 (457)
332 PRK01438 murD UDP-N-acetylmura 61.9 12 0.00025 39.9 4.9 28 325-352 10-37 (480)
333 PRK07251 pyridine nucleotide-d 61.8 9.3 0.0002 40.0 4.1 33 332-376 4-36 (438)
334 PRK07588 hypothetical protein; 61.7 9.6 0.00021 38.9 4.1 21 332-352 1-21 (391)
335 PRK14106 murD UDP-N-acetylmura 61.5 11 0.00025 39.4 4.7 36 328-375 2-37 (450)
336 PRK12778 putative bifunctional 61.5 12 0.00025 42.6 5.1 36 328-375 428-463 (752)
337 PTZ00318 NADH dehydrogenase-li 61.5 8.4 0.00018 40.5 3.7 36 329-376 8-43 (424)
338 KOG0743 AAA+-type ATPase [Post 61.3 13 0.00028 40.6 5.1 104 199-339 241-345 (457)
339 PRK08020 ubiF 2-octaprenyl-3-m 61.1 9.3 0.0002 38.9 3.8 33 331-375 5-37 (391)
340 COG1179 Dinucleotide-utilizing 61.0 7.4 0.00016 39.6 3.0 41 328-379 27-67 (263)
341 PRK12829 short chain dehydroge 60.9 27 0.00059 32.9 6.7 36 328-375 8-44 (264)
342 PRK12266 glpD glycerol-3-phosp 60.8 9.9 0.00021 41.2 4.2 34 332-377 7-40 (508)
343 PRK12831 putative oxidoreducta 60.8 11 0.00024 40.4 4.5 34 330-375 139-172 (464)
344 PRK12779 putative bifunctional 60.8 10 0.00022 44.7 4.5 40 329-380 304-347 (944)
345 COG2072 TrkA Predicted flavopr 60.7 11 0.00023 40.5 4.3 36 330-376 7-42 (443)
346 TIGR02441 fa_ox_alpha_mit fatt 60.4 19 0.0004 41.4 6.4 43 408-452 438-480 (737)
347 PLN02240 UDP-glucose 4-epimera 60.4 17 0.00037 36.2 5.5 105 328-444 2-130 (352)
348 PRK09853 putative selenate red 60.3 10 0.00023 45.1 4.5 35 329-375 537-571 (1019)
349 PRK07424 bifunctional sterol d 60.1 13 0.00027 39.8 4.7 55 294-375 156-211 (406)
350 PRK08013 oxidoreductase; Provi 60.1 11 0.00023 39.0 4.2 22 331-352 3-24 (400)
351 cd01490 Ube1_repeat2 Ubiquitin 60.1 11 0.00025 40.8 4.4 37 333-375 1-37 (435)
352 PRK08849 2-octaprenyl-3-methyl 60.0 11 0.00025 38.5 4.3 21 332-352 4-24 (384)
353 PRK06416 dihydrolipoamide dehy 60.0 10 0.00022 40.0 4.0 33 332-376 5-37 (462)
354 TIGR00441 gmhA phosphoheptose 60.0 64 0.0014 29.4 8.7 37 411-449 79-117 (154)
355 PRK06185 hypothetical protein; 59.9 10 0.00022 38.8 3.9 33 331-375 6-38 (407)
356 TIGR01377 soxA_mon sarcosine o 59.8 11 0.00025 37.8 4.2 34 333-378 2-35 (380)
357 TIGR01505 tartro_sem_red 2-hyd 59.7 35 0.00076 33.8 7.5 31 333-375 1-31 (291)
358 PRK08243 4-hydroxybenzoate 3-m 59.5 12 0.00025 38.6 4.2 22 331-352 2-23 (392)
359 PRK08244 hypothetical protein; 59.5 11 0.00023 40.3 4.1 21 332-352 3-23 (493)
360 PLN02427 UDP-apiose/xylose syn 59.4 29 0.00063 35.6 7.1 83 322-421 5-96 (386)
361 TIGR02371 ala_DH_arch alanine 59.3 23 0.0005 36.4 6.4 92 330-446 127-222 (325)
362 PRK06849 hypothetical protein; 59.2 7.7 0.00017 40.1 2.9 104 331-455 4-115 (389)
363 PRK05714 2-octaprenyl-3-methyl 59.2 9.4 0.0002 39.2 3.5 31 333-375 4-34 (405)
364 PRK13394 3-hydroxybutyrate deh 59.0 27 0.00059 32.8 6.4 36 328-375 4-40 (262)
365 PRK07538 hypothetical protein; 58.9 11 0.00024 39.0 4.0 20 333-352 2-21 (413)
366 cd01968 Nitrogenase_NifE_I Nit 58.9 13 0.00029 39.0 4.6 86 319-420 275-365 (410)
367 PRK08294 phenol 2-monooxygenas 58.9 9.5 0.00021 42.7 3.7 35 330-375 31-65 (634)
368 PF06690 DUF1188: Protein of u 58.8 19 0.00042 36.4 5.5 89 326-449 39-128 (252)
369 PF12831 FAD_oxidored: FAD dep 58.6 12 0.00026 39.6 4.3 33 334-378 2-34 (428)
370 TIGR03315 Se_ygfK putative sel 58.6 11 0.00024 44.9 4.3 34 330-375 536-569 (1012)
371 PRK13403 ketol-acid reductoiso 58.6 22 0.00047 37.5 6.0 66 327-417 12-77 (335)
372 KOG2012 Ubiquitin activating e 58.6 6.1 0.00013 46.0 2.2 77 327-416 426-507 (1013)
373 PRK05866 short chain dehydroge 58.5 20 0.00044 35.5 5.6 38 326-375 35-73 (293)
374 TIGR00031 UDP-GALP_mutase UDP- 58.4 12 0.00026 39.5 4.2 31 333-375 3-33 (377)
375 PRK06823 ornithine cyclodeamin 58.2 26 0.00057 36.1 6.5 83 330-431 127-213 (315)
376 PRK10015 oxidoreductase; Provi 58.2 11 0.00025 39.8 4.0 32 332-375 6-37 (429)
377 PLN02695 GDP-D-mannose-3',5'-e 58.2 33 0.00072 35.3 7.3 97 330-446 20-137 (370)
378 PRK11199 tyrA bifunctional cho 58.2 34 0.00074 35.9 7.5 33 331-375 98-131 (374)
379 PRK12814 putative NADPH-depend 58.0 12 0.00027 41.9 4.4 34 330-375 192-225 (652)
380 COG1893 ApbA Ketopantoate redu 58.0 32 0.0007 35.2 7.1 22 332-353 1-22 (307)
381 TIGR01789 lycopene_cycl lycope 58.0 15 0.00033 38.1 4.9 20 334-353 2-21 (370)
382 COG1086 Predicted nucleoside-d 58.0 16 0.00034 41.1 5.1 110 327-455 246-389 (588)
383 PRK09490 metH B12-dependent me 57.9 53 0.0012 40.2 9.8 119 264-425 442-572 (1229)
384 PRK11445 putative oxidoreducta 57.9 12 0.00026 38.1 3.9 20 333-352 3-22 (351)
385 PRK10262 thioredoxin reductase 57.7 9 0.0002 38.2 3.0 24 329-352 4-27 (321)
386 PF04320 DUF469: Protein with 57.6 9.3 0.0002 33.8 2.7 33 253-285 27-62 (101)
387 PRK12770 putative glutamate sy 57.4 16 0.00034 37.3 4.7 35 329-375 16-50 (352)
388 TIGR01179 galE UDP-glucose-4-e 57.4 41 0.00089 32.5 7.4 96 333-443 1-118 (328)
389 PRK12828 short chain dehydroge 57.3 18 0.00039 33.3 4.7 36 328-375 4-40 (239)
390 PRK07333 2-octaprenyl-6-methox 57.2 11 0.00023 38.5 3.5 20 333-352 3-22 (403)
391 KOG2018 Predicted dinucleotide 57.2 12 0.00027 39.5 3.9 40 327-377 70-109 (430)
392 COG1748 LYS9 Saccharopine dehy 57.2 14 0.0003 39.5 4.5 85 332-435 2-90 (389)
393 cd01493 APPBP1_RUB Ubiquitin a 57.0 13 0.00027 40.2 4.1 38 327-375 16-53 (425)
394 PRK08850 2-octaprenyl-6-methox 57.0 12 0.00027 38.5 3.9 33 331-375 4-36 (405)
395 TIGR01285 nifN nitrogenase mol 56.9 17 0.00037 38.9 5.1 96 320-442 300-395 (432)
396 TIGR01350 lipoamide_DH dihydro 56.8 13 0.00029 38.9 4.2 30 333-374 3-32 (461)
397 PRK08010 pyridine nucleotide-d 56.8 12 0.00026 39.3 3.9 32 332-375 4-35 (441)
398 PRK13512 coenzyme A disulfide 56.8 9.3 0.0002 40.3 3.1 33 333-375 3-35 (438)
399 PRK11259 solA N-methyltryptoph 56.7 14 0.00031 37.1 4.2 34 332-377 4-37 (376)
400 TIGR03589 PseB UDP-N-acetylglu 56.5 27 0.00059 35.1 6.2 105 329-445 2-124 (324)
401 PRK07589 ornithine cyclodeamin 56.4 48 0.001 34.8 8.2 83 330-431 128-216 (346)
402 TIGR01317 GOGAT_sm_gam glutama 56.4 15 0.00032 39.7 4.5 34 330-375 142-175 (485)
403 PRK01747 mnmC bifunctional tRN 56.3 14 0.0003 41.2 4.5 34 332-377 261-294 (662)
404 PRK13369 glycerol-3-phosphate 56.3 12 0.00027 40.3 3.9 34 332-377 7-40 (502)
405 COG0476 ThiF Dinucleotide-util 56.3 10 0.00023 37.1 3.1 39 326-375 25-63 (254)
406 PRK09186 flagellin modificatio 56.3 23 0.0005 33.3 5.4 35 329-375 2-37 (256)
407 TIGR02053 MerA mercuric reduct 56.3 13 0.00029 39.2 4.2 30 334-375 3-32 (463)
408 PRK12416 protoporphyrinogen ox 56.2 7.7 0.00017 40.7 2.4 47 332-378 2-55 (463)
409 PLN02350 phosphogluconate dehy 56.2 34 0.00073 37.7 7.3 97 333-449 8-110 (493)
410 PRK09987 dTDP-4-dehydrorhamnos 56.1 45 0.00097 33.1 7.6 63 333-422 2-65 (299)
411 PRK07494 2-octaprenyl-6-methox 56.1 14 0.0003 37.6 4.1 33 331-375 7-39 (388)
412 PLN02676 polyamine oxidase 56.0 29 0.00062 37.6 6.6 23 330-352 25-47 (487)
413 PRK11101 glpA sn-glycerol-3-ph 56.0 14 0.0003 40.5 4.3 34 331-376 6-39 (546)
414 KOG2711 Glycerol-3-phosphate d 56.0 43 0.00093 35.7 7.6 97 332-438 22-130 (372)
415 PRK14694 putative mercuric red 55.9 14 0.00031 39.2 4.3 33 331-375 6-38 (468)
416 TIGR03143 AhpF_homolog putativ 55.8 13 0.00027 40.9 3.9 32 333-376 6-37 (555)
417 PRK06292 dihydrolipoamide dehy 55.7 14 0.0003 38.9 4.1 32 332-375 4-35 (460)
418 PF13407 Peripla_BP_4: Peripla 55.6 43 0.00094 31.4 7.1 148 153-327 52-206 (257)
419 PRK00711 D-amino acid dehydrog 55.5 15 0.00032 37.7 4.2 31 333-375 2-32 (416)
420 PRK06545 prephenate dehydrogen 55.5 38 0.00082 35.1 7.2 22 332-353 1-22 (359)
421 PRK05868 hypothetical protein; 55.5 14 0.00031 38.0 4.1 21 332-352 2-22 (372)
422 COG2423 Predicted ornithine cy 55.5 27 0.00058 36.6 6.1 96 315-431 116-216 (330)
423 PTZ00245 ubiquitin activating 55.4 12 0.00026 38.5 3.4 39 327-376 22-60 (287)
424 TIGR03736 PRTRC_ThiF PRTRC sys 55.4 19 0.00041 36.1 4.8 43 330-377 10-56 (244)
425 PRK13938 phosphoheptose isomer 55.1 1E+02 0.0022 29.7 9.6 37 411-449 113-151 (196)
426 PRK05749 3-deoxy-D-manno-octul 55.1 42 0.00091 34.7 7.5 37 402-443 312-349 (425)
427 PRK03515 ornithine carbamoyltr 55.1 87 0.0019 32.8 9.8 138 262-419 90-233 (336)
428 TIGR02360 pbenz_hydroxyl 4-hyd 55.0 15 0.00032 38.1 4.1 21 332-352 3-23 (390)
429 PRK07067 sorbitol dehydrogenas 55.0 12 0.00026 35.6 3.2 36 328-375 3-39 (257)
430 COG3349 Uncharacterized conser 55.0 9.6 0.00021 41.9 2.9 44 332-380 1-51 (485)
431 PRK06912 acoL dihydrolipoamide 54.9 15 0.00032 39.0 4.2 31 333-375 2-32 (458)
432 PRK06834 hypothetical protein; 54.9 15 0.00033 39.6 4.4 34 330-375 2-35 (488)
433 PRK11728 hydroxyglutarate oxid 54.6 16 0.00035 37.6 4.3 35 332-376 3-37 (393)
434 PF03486 HI0933_like: HI0933-l 54.6 13 0.00028 39.7 3.7 31 333-375 2-32 (409)
435 TIGR02440 FadJ fatty oxidation 54.5 27 0.00059 39.7 6.5 46 405-452 405-450 (699)
436 PRK06841 short chain dehydroge 54.5 20 0.00044 33.8 4.7 36 328-375 12-48 (255)
437 PF00732 GMC_oxred_N: GMC oxid 54.4 10 0.00022 37.0 2.7 35 334-379 3-37 (296)
438 PRK06392 homoserine dehydrogen 54.4 56 0.0012 34.0 8.2 81 333-420 2-90 (326)
439 PRK05993 short chain dehydroge 54.4 27 0.00058 33.9 5.6 33 331-375 4-37 (277)
440 PRK08132 FAD-dependent oxidore 54.1 14 0.00031 40.0 4.0 22 331-352 23-44 (547)
441 PRK04965 NADH:flavorubredoxin 54.0 10 0.00022 38.8 2.8 35 332-376 3-37 (377)
442 PF01408 GFO_IDH_MocA: Oxidore 54.0 24 0.00052 29.7 4.6 84 332-435 1-84 (120)
443 PRK05976 dihydrolipoamide dehy 54.0 15 0.00034 38.9 4.2 32 332-375 5-36 (472)
444 PRK00141 murD UDP-N-acetylmura 53.9 18 0.00038 38.9 4.6 25 328-352 12-36 (473)
445 PRK06138 short chain dehydroge 53.9 28 0.00061 32.6 5.5 36 328-375 2-38 (252)
446 PF13241 NAD_binding_7: Putati 53.9 11 0.00024 32.1 2.5 37 328-376 4-40 (103)
447 TIGR03364 HpnW_proposed FAD de 53.7 16 0.00034 36.9 4.0 32 333-376 2-33 (365)
448 PLN02568 polyamine oxidase 53.6 8.8 0.00019 42.3 2.4 24 330-353 4-27 (539)
449 COG1252 Ndh NADH dehydrogenase 53.4 13 0.00029 39.9 3.5 35 331-375 3-37 (405)
450 PRK06617 2-octaprenyl-6-methox 53.1 15 0.00032 37.6 3.7 20 333-352 3-22 (374)
451 PRK11559 garR tartronate semia 52.9 53 0.0012 32.5 7.5 32 332-375 3-34 (296)
452 COG3380 Predicted NAD/FAD-depe 52.7 17 0.00037 37.8 4.1 31 333-375 3-33 (331)
453 COG1063 Tdh Threonine dehydrog 52.6 25 0.00054 36.3 5.3 59 305-374 143-201 (350)
454 PLN02927 antheraxanthin epoxid 52.3 13 0.00028 42.4 3.5 36 328-375 78-113 (668)
455 PRK06126 hypothetical protein; 52.2 18 0.00038 39.1 4.3 34 330-375 6-39 (545)
456 cd05006 SIS_GmhA Phosphoheptos 52.1 91 0.002 28.7 8.5 35 411-447 101-137 (177)
457 TIGR01318 gltD_gamma_fam gluta 52.0 21 0.00046 38.3 4.9 34 330-375 140-173 (467)
458 COG0565 LasT rRNA methylase [T 52.0 47 0.001 33.6 6.9 75 330-424 3-85 (242)
459 COG0665 DadA Glycine/D-amino a 51.9 22 0.00047 35.8 4.7 38 330-379 3-40 (387)
460 PF02558 ApbA: Ketopantoate re 51.9 24 0.00053 31.0 4.5 31 334-376 1-31 (151)
461 PRK12809 putative oxidoreducta 51.8 20 0.00043 40.1 4.8 35 330-376 309-343 (639)
462 PRK06183 mhpA 3-(3-hydroxyphen 51.8 17 0.00036 39.4 4.1 23 330-352 9-31 (538)
463 TIGR01373 soxB sarcosine oxida 51.6 22 0.00048 36.6 4.8 38 330-377 29-66 (407)
464 PRK07190 hypothetical protein; 51.3 21 0.00045 38.7 4.7 33 331-375 5-37 (487)
465 PLN02653 GDP-mannose 4,6-dehyd 51.3 54 0.0012 32.8 7.3 82 328-421 3-93 (340)
466 PRK05249 soluble pyridine nucl 51.3 17 0.00038 38.1 4.0 33 331-375 5-37 (461)
467 TIGR00658 orni_carb_tr ornithi 51.1 1.3E+02 0.0029 30.8 10.3 113 289-419 107-224 (304)
468 PRK06199 ornithine cyclodeamin 51.0 68 0.0015 34.0 8.3 84 330-431 154-250 (379)
469 PF13738 Pyr_redox_3: Pyridine 50.9 18 0.00038 33.0 3.6 25 328-352 164-188 (203)
470 PRK04690 murD UDP-N-acetylmura 50.8 20 0.00043 38.5 4.4 24 329-352 6-29 (468)
471 PRK12775 putative trifunctiona 50.5 19 0.00041 42.8 4.5 34 330-375 429-462 (1006)
472 TIGR01757 Malate-DH_plant mala 50.4 76 0.0016 34.0 8.6 116 331-457 44-181 (387)
473 PTZ00188 adrenodoxin reductase 50.4 26 0.00057 38.8 5.3 34 331-375 39-72 (506)
474 PLN02172 flavin-containing mon 50.0 20 0.00043 38.7 4.3 36 329-376 202-237 (461)
475 cd05188 MDR Medium chain reduc 50.0 43 0.00094 31.1 6.0 45 319-375 123-167 (271)
476 PRK06182 short chain dehydroge 49.9 30 0.00064 33.3 5.1 74 330-422 2-85 (273)
477 PRK06567 putative bifunctional 49.9 21 0.00045 42.7 4.7 37 327-375 379-415 (1028)
478 PRK02472 murD UDP-N-acetylmura 49.9 23 0.00051 37.1 4.7 24 329-352 3-26 (447)
479 PRK12562 ornithine carbamoyltr 49.7 1.4E+02 0.003 31.4 10.2 113 289-419 113-233 (334)
480 PRK13748 putative mercuric red 49.0 19 0.00041 39.0 3.9 33 331-375 98-130 (561)
481 KOG1399 Flavin-containing mono 49.0 14 0.00029 40.2 2.8 23 331-353 6-28 (448)
482 PRK08268 3-hydroxy-acyl-CoA de 48.8 21 0.00046 39.1 4.3 31 332-374 8-38 (507)
483 PRK14852 hypothetical protein; 48.8 16 0.00034 43.5 3.5 39 327-376 328-366 (989)
484 PLN02985 squalene monooxygenas 48.7 24 0.00053 38.5 4.8 23 330-352 42-64 (514)
485 COG1064 AdhP Zn-dependent alco 48.6 35 0.00076 36.0 5.7 99 307-434 142-250 (339)
486 PRK13984 putative oxidoreducta 48.6 22 0.00048 39.1 4.5 34 330-375 282-315 (604)
487 PRK08219 short chain dehydroge 48.0 66 0.0014 29.5 6.9 71 332-422 4-82 (227)
488 PLN02697 lycopene epsilon cycl 47.9 20 0.00042 39.7 3.9 21 332-352 109-129 (529)
489 PRK05808 3-hydroxybutyryl-CoA 47.6 24 0.00051 34.9 4.1 31 332-374 4-34 (282)
490 PTZ00367 squalene epoxidase; P 47.6 49 0.0011 36.9 6.9 30 323-352 22-54 (567)
491 COG0562 Glf UDP-galactopyranos 47.5 22 0.00047 37.8 3.9 34 333-378 3-36 (374)
492 PLN02657 3,8-divinyl protochlo 47.3 68 0.0015 33.6 7.6 107 324-443 53-179 (390)
493 TIGR01408 Ube1 ubiquitin-activ 47.2 17 0.00036 43.4 3.4 39 327-376 20-58 (1008)
494 PRK08655 prephenate dehydrogen 47.0 66 0.0014 34.6 7.6 31 333-375 2-33 (437)
495 cd01976 Nitrogenase_MoFe_alpha 46.6 46 0.00099 35.5 6.3 87 318-420 287-378 (421)
496 PRK07208 hypothetical protein; 46.5 24 0.00051 37.3 4.1 22 331-352 4-25 (479)
497 PRK07121 hypothetical protein; 46.4 25 0.00054 37.6 4.4 35 331-377 20-54 (492)
498 PRK02102 ornithine carbamoyltr 46.4 1.8E+02 0.004 30.5 10.5 112 289-419 114-232 (331)
499 TIGR02733 desat_CrtD C-3',4' d 46.4 27 0.00058 37.2 4.5 34 331-376 1-34 (492)
500 CHL00076 chlB photochlorophyll 46.3 28 0.00061 38.3 4.8 80 326-419 300-382 (513)
No 1
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=100.00 E-value=3.2e-169 Score=1310.04 Aligned_cols=414 Identities=63% Similarity=0.988 Sum_probs=407.6
Q ss_pred cccc-ccccccccccccCCCCCcCCCCCHHHHhhhccCCCCCCccccHHHHHHHHHHHhhcCCCchhHHHHHhhhhhhhh
Q 012553 42 VTPW-TISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNE 120 (461)
Q Consensus 42 ~~~~-~~~~~~G~~~l~~p~~NKG~aFt~~ER~~l~l~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~~Ne 120 (461)
..+| ..+..+|+++|+||++|||+|||.+||++|||||||||+|+|+|+|++||+.+++++++||+||+||++||+|||
T Consensus 20 ~~~~~~~~~~~g~~ll~~p~~NKglAFTl~ERq~l~i~GLLPp~v~t~d~Q~~r~~~~l~~~~~~l~ky~~L~~L~~rNe 99 (582)
T KOG1257|consen 20 ITPRPVESKKRGYDLLRDPRYNKGLAFTLEERQRLGIHGLLPPVVRTQDEQALRCMNNLRSLTSPLAKYIYLMDLQDRNE 99 (582)
T ss_pred ccccccccccCChhhccCCCcccccccCHHHHHhhCccccCCccccCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhh
Confidence 3444 566789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHhhhcccccCCcccccchHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeeccCCCC
Q 012553 121 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLG 200 (461)
Q Consensus 121 ~LFY~ll~~~~ee~lpivYTPtVg~ac~~~s~i~r~p~glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG 200 (461)
+|||+++++|+||+||||||||||+|||+||+|||+|+|||||++|+|||.++|+|||.++|++||||||+|||||||||
T Consensus 100 rLfY~~l~~nie~~~PIvYTPTvG~acq~y~~i~r~p~Glfisi~D~Ghi~~~l~nWp~~~V~~IvVTDGerILGLGDlG 179 (582)
T KOG1257|consen 100 RLFYRLLIDNIEELLPIVYTPTVGLACQQYGLIFRRPQGLFISIKDKGHIKQVLKNWPERNVKAIVVTDGERILGLGDLG 179 (582)
T ss_pred HHHHHHHHhhHHHhCCeeecCcHHHHHHHhhhhhccCceeEEEecccchHHHHHHhCCccceeEEEEeCCCceecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccchhhhhHHHhhCCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeee
Q 012553 201 CQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQ 280 (461)
Q Consensus 201 ~~GmgI~~GKl~Ly~a~gGI~P~~~lPI~LDvGTnne~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~~lIq 280 (461)
++|||||+||++||||||||+|++|||||||||||||+||+||+|+|+|++|++|++||+|+||||+||+++|||+++||
T Consensus 180 ~~GmgIpvgKL~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~eYd~~~dEFm~Av~~~yG~~~lIq 259 (582)
T KOG1257|consen 180 VNGMGIPVGKLALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKEYDEFLDEFMEAVVQRYGPNTLIQ 259 (582)
T ss_pred cCcccceecHHHHHHHhcCCChhhceeEEEeccCChHHHhcCccccccccccccccHHHHHHHHHHHHHHHHhCcceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCcccHHHHHHHHcCCCceeccCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCC
Q 012553 281 FEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKA 360 (461)
Q Consensus 281 ~EDf~~~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gl 360 (461)
||||+++|||++|+|||.++|||||||||||+|+|||||+|+|++|++|+|++|||+|||+||+|||+||+.+|+++ |+
T Consensus 260 FEDF~~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~~lsd~~ilf~GAG~A~~GIA~l~v~~m~~~-Gl 338 (582)
T KOG1257|consen 260 FEDFANHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGKPLSDHVILFLGAGEAALGIANLIVMAMVKE-GL 338 (582)
T ss_pred ehhccchhHHHHHHHhccccceecccccchhHHHHHHHHHHHHHhCCccccceEEEecCchHHhhHHHHHHHHHHHc-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999996 99
Q ss_pred ChhhccceEEEEcCCCccccCCcCCCChhhhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCc
Q 012553 361 PVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVV 440 (461)
Q Consensus 361 s~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erP 440 (461)
|++||++||||+|++|||+++|+.+++++|++||+++++.++|+|||+.||||||||+|++||+|||||||+|+++||||
T Consensus 339 ~~eeA~kkIwlvD~~GLi~~~r~~~l~~~~~~fAk~~~~~~~L~e~V~~vKPtvLiG~S~~~g~Fteevl~~Ma~~~erP 418 (582)
T KOG1257|consen 339 SEEEARKKIWLVDSKGLITKGRKASLTEEKKPFAKDHEEIKDLEEAVKEVKPTVLIGASGVGGAFTEEVLRAMAKSNERP 418 (582)
T ss_pred CHHHHhccEEEEecCceeeccccCCCChhhccccccChHHHHHHHHHHhcCCcEEEecccCCccCCHHHHHHHHhcCCCc
Confidence 99999999999999999999998789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCchhhhhh
Q 012553 441 FQALLWLIRKFNFCSL 456 (461)
Q Consensus 441 IIF~Lsnp~~~~~~~~ 456 (461)
||||||||+...||+-
T Consensus 419 iIFalSNPT~~aECta 434 (582)
T KOG1257|consen 419 IIFALSNPTSKAECTA 434 (582)
T ss_pred eEEecCCCccccccCH
Confidence 9999999999999974
No 2
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=6.6e-163 Score=1288.69 Aligned_cols=408 Identities=72% Similarity=1.107 Sum_probs=402.2
Q ss_pred cccccccccCCCCCcCCCCCHHHHhhhccCCCCCCccccHHHHHHHHHHHhhcCCCchhHHHHHhhhhhhhhhhhHHHhh
Q 012553 49 VASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLI 128 (461)
Q Consensus 49 ~~~G~~~l~~p~~NKG~aFt~~ER~~l~l~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~~Ne~LFY~ll~ 128 (461)
..+|+++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||++++++|+||+||++||+|||+|||++++
T Consensus 39 ~~~G~~ll~~p~~NKgtaFt~~ER~~lgl~GLlP~~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~ll~ 118 (581)
T PLN03129 39 VASGYDLLRDPRYNKGLAFTETERDRLGLRGLLPPAVLSQELQVKRFMENLRALESPLAKYRALMDLQERNERLFYRVLI 118 (581)
T ss_pred CCcchhhhcCcccccccCCCHHHHhhcCCccCCCCCcCCHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhCcccchhhhh
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCcccccchHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeeccCCCCCCccccch
Q 012553 129 DNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPV 208 (461)
Q Consensus 129 ~~~ee~lpivYTPtVg~ac~~~s~i~r~p~glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~~ 208 (461)
+|++|+||||||||||+||++||++||+|+|||||++|+|+|+++++|||.++|+|||||||||||||||+|++||||||
T Consensus 119 ~~~~e~lpiiYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGDlG~~Gm~I~~ 198 (581)
T PLN03129 119 DNIEELLPIVYTPTVGEACQKYGSLFRRPRGLYISLKDKGRVLSMLKNWPERDVQVIVVTDGERILGLGDLGVQGMGIPV 198 (581)
T ss_pred cCHHHhCCeeeCCcHHHHHHHHHHhhcCCCceeecccCHHHHHHHHhcCCCcCceEEEEecCcceeeccccCCCccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHhhCCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCccc
Q 012553 209 GKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHN 288 (461)
Q Consensus 209 GKl~Ly~a~gGI~P~~~lPI~LDvGTnne~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~~lIq~EDf~~~~ 288 (461)
||++|||+||||||++|||||||+|||||+||+||+|+||||+|++|+||++|+||||++|+.+|||+++||||||++||
T Consensus 199 GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~LL~DP~YlG~r~~Rv~g~eY~~~~defv~av~~~fGp~~~I~~EDf~~~~ 278 (581)
T PLN03129 199 GKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLRQPRLTGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKN 278 (581)
T ss_pred hHHHHHHhhcCCChhhccceEEecCCCchhhccCccccCcCCCCCchhhHHHhHHHHHHHHHHHhCCccEEehhhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCceeccCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccce
Q 012553 289 AFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (461)
Q Consensus 289 af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~ 368 (461)
||+||+|||++||||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|+++.|+|+|||++|
T Consensus 279 af~iL~ryr~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~ 358 (581)
T PLN03129 279 AFRLLQRYRTTHLCFNDDIQGTAAVALAGLLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKR 358 (581)
T ss_pred HHHHHHHhccCCCEeccccchHHHHHHHHHHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999987669999999999
Q ss_pred EEEEcCCCccccCCcCCCChhhhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcCCC
Q 012553 369 ICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLWLI 448 (461)
Q Consensus 369 i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Lsnp 448 (461)
||+||++|||+++|.++|+++|++||++.++..+|+|||+++|||||||+|+++|+||||||++|+++||||||||||||
T Consensus 359 i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNP 438 (581)
T PLN03129 359 IWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSNP 438 (581)
T ss_pred EEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCC
Confidence 99999999999999766999999999987778899999999999999999999999999999999999999999999999
Q ss_pred Cchhhhhh
Q 012553 449 RKFNFCSL 456 (461)
Q Consensus 449 ~~~~~~~~ 456 (461)
+.+-||.-
T Consensus 439 t~~~E~~p 446 (581)
T PLN03129 439 TSKAECTA 446 (581)
T ss_pred CCCcCcCH
Confidence 99999973
No 3
>PRK13529 malate dehydrogenase; Provisional
Probab=100.00 E-value=5.9e-163 Score=1285.46 Aligned_cols=407 Identities=47% Similarity=0.797 Sum_probs=398.9
Q ss_pred cccccccccccCCCCCcCCCCCHHHHhhhccCCCCCCccccHHHHHHHHHHHhhcCCCchhHHHHHhhhhhhhhhhhHHH
Q 012553 47 ISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKL 126 (461)
Q Consensus 47 ~~~~~G~~~l~~p~~NKG~aFt~~ER~~l~l~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~~Ne~LFY~l 126 (461)
.+..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||+++++||+||+||++||+|||+|||++
T Consensus 12 ~~~~~G~~lL~~p~~NKgtaFt~~ER~~lgl~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~l 91 (563)
T PRK13529 12 YTPLRGPALLNNPLLNKGTAFTEEEREEFGLEGLLPPAVETLEEQAERAYRQYQSKPTDLEKHIYLRNLQDRNETLFYRL 91 (563)
T ss_pred eecccchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCchhhHHH
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccCCcccccchHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeeccCCCCCCcccc
Q 012553 127 LIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGI 206 (461)
Q Consensus 127 l~~~~ee~lpivYTPtVg~ac~~~s~i~r~p~glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI 206 (461)
+++|+||+||||||||||+|||+||++||+|+|||||++|+|+|.++|+|||.++|++||||||||||||||||++||||
T Consensus 92 l~~~~ee~~PivYTPTVG~ac~~~s~~~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~Gm~I 171 (563)
T PRK13529 92 LSDHLEEMMPIIYTPTVGEACERFSHIYRRPRGLFISYDDRDRIEDILQNAPNRDIKLIVVTDGERILGIGDQGIGGMGI 171 (563)
T ss_pred HHhCHHHhCCeeecccHHHHHHHHhhcccCCCceEeccCCHHHHHHHHhcCCcccceEEEEeCCceeeeccccCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhHHHhhCCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCc
Q 012553 207 PVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFAN 286 (461)
Q Consensus 207 ~~GKl~Ly~a~gGI~P~~~lPI~LDvGTnne~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~~lIq~EDf~~ 286 (461)
||||++|||+||||||++|||||||+|||||+||+||+|+||||+|++|++|++|+||||++|+.+| |+++||||||++
T Consensus 172 ~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~Ll~DP~YlG~r~~R~~g~eY~~f~defv~av~~~~-P~~~I~~EDf~~ 250 (563)
T PRK13529 172 PIGKLSLYTACGGIDPARTLPVVLDVGTNNEQLLNDPLYLGWRHPRIRGEEYDEFVDEFVQAVKRRF-PNALLQFEDFAQ 250 (563)
T ss_pred cccHHHHhhccCCCChhheeceEEecCCCchhhccCccccCcCCCCCchHHHHHHHHHHHHHHHHhC-CCeEEehhhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred ccHHHHHHHHcCCCceeccCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhcc
Q 012553 287 HNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 366 (461)
Q Consensus 287 ~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~ 366 (461)
+|||+||+|||++||||||||||||+|+||||+||+|++|++|+||||||+|||+||+|||++|+++|++ +|+|+|||+
T Consensus 251 ~~af~iL~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~-~Gl~~eeA~ 329 (563)
T PRK13529 251 KNARRILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVR-EGLSEEEAR 329 (563)
T ss_pred chHHHHHHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH-cCCChhHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987 499999999
Q ss_pred ceEEEEcCCCccccCCcCCCChhhhhhccccCCC---------CCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCC
Q 012553 367 KKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV---------NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN 437 (461)
Q Consensus 367 ~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~---------~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~ 437 (461)
++||+||++|||+++|.+ |+++|++||++.++. .+|+|||+++|||||||+|+++|+||||||++|+++|
T Consensus 330 ~~i~~vD~~GLl~~~r~~-l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~ 408 (563)
T PRK13529 330 KRFFMVDRQGLLTDDMPD-LLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHC 408 (563)
T ss_pred CeEEEEcCCCeEeCCCCc-chHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcC
Confidence 999999999999999976 999999999975542 6899999999999999999999999999999999999
Q ss_pred CCcEEEEcCCCCchhhhhh
Q 012553 438 EVVFQALLWLIRKFNFCSL 456 (461)
Q Consensus 438 erPIIF~Lsnp~~~~~~~~ 456 (461)
|||||||||||+.+.||+-
T Consensus 409 erPIIFaLSNPt~~aE~tp 427 (563)
T PRK13529 409 ERPIIFPLSNPTSRAEATP 427 (563)
T ss_pred CCCEEEECCCcCCCcccCH
Confidence 9999999999999999974
No 4
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=2.3e-162 Score=1280.14 Aligned_cols=409 Identities=48% Similarity=0.778 Sum_probs=400.1
Q ss_pred ccccccccccccCCCCCcCCCCCHHHHhhhccCCCCCCccccHHHHHHHHHHHhhcCCCchhHHHHHhhhhhhhhhhhHH
Q 012553 46 TISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYK 125 (461)
Q Consensus 46 ~~~~~~G~~~l~~p~~NKG~aFt~~ER~~l~l~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~~Ne~LFY~ 125 (461)
..+..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.|++++++||+||+||++||+|||+|||+
T Consensus 13 ~~~~~~G~~lL~~p~~NKgtAFt~~ER~~l~l~GLlPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~ 92 (559)
T PTZ00317 13 VPSNARGVDVLRNRFLNKGTAFTAEEREHLGIEGLLPPTVETLEQQVERLWTQFNRIETPINKYQFLRNIHDTNETLFYA 92 (559)
T ss_pred cccCCcchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhhCCChHHHHHHHHHHhhcCchHHHH
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccccCCcccccchHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeeccCCCCCCccc
Q 012553 126 LLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMG 205 (461)
Q Consensus 126 ll~~~~ee~lpivYTPtVg~ac~~~s~i~r~p~glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~Gmg 205 (461)
++++|+||+||||||||||+||++||++||+|+|||+|++|+|+|+++|+|||.++|++||||||||||||||+|++|||
T Consensus 93 ll~~~~ee~lpivYTPtVg~ac~~~s~~~r~p~Gly~s~~drg~i~~~l~Nwp~~~v~viVVTDG~rILGLGDlG~~Gm~ 172 (559)
T PTZ00317 93 LLLKYLKELLPIIYTPTVGEACQNYSNLFQRDRGLYLSRAHKGKIREILKNWPYDNVDVIVITDGSRILGLGDLGANGMG 172 (559)
T ss_pred HHHhCHHHhcceecCcchHHHHHHHHhcccccCceEEeecCcchHHHHHhcCCccCceEEEEeccccccccCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhHHHhhCCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCC
Q 012553 206 IPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFA 285 (461)
Q Consensus 206 I~~GKl~Ly~a~gGI~P~~~lPI~LDvGTnne~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~~lIq~EDf~ 285 (461)
|||||++|||+||||||++|||||||+|||||+||+||+|+||||+|++|++|++|+||||+||+.+| |+++||||||+
T Consensus 173 I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~R~~g~eY~~f~defv~av~~~~-P~~~Iq~EDf~ 251 (559)
T PTZ00317 173 ISIGKLSLYVAGGGINPSRVLPVVLDVGTNNEKLLNDPLYLGLREKRLDDDEYYELLDEFMEAVSSRW-PNAVVQFEDFS 251 (559)
T ss_pred ccccHHHHHHhhcCCChhhccceEEecCCChhhhccCcccccccCCCCChhhHHHHHHHHHHHHHHhC-CCeEEehhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred cccHHHHHHHHcCCCceeccCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhc
Q 012553 286 NHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEET 365 (461)
Q Consensus 286 ~~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA 365 (461)
++|||++|+|||++||||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+|||
T Consensus 252 ~~naf~iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~-~Gls~eeA 330 (559)
T PTZ00317 252 NNHCFDLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAE-YGVTREEA 330 (559)
T ss_pred CccHHHHHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH-cCCChhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987 59999999
Q ss_pred cceEEEEcCCCccccCCcCCCChhhhhhcccc--CC---CCCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCc
Q 012553 366 RKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EP---VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVV 440 (461)
Q Consensus 366 ~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~--~~---~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erP 440 (461)
++|||+||++|||+++|.+.|+++|++||++. ++ ..+|+|||+.+|||||||+|+++|+||||||++|+++||||
T Consensus 331 ~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rP 410 (559)
T PTZ00317 331 LKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERP 410 (559)
T ss_pred cCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCC
Confidence 99999999999999999766999999999974 33 57999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCchhhhhh
Q 012553 441 FQALLWLIRKFNFCSL 456 (461)
Q Consensus 441 IIF~Lsnp~~~~~~~~ 456 (461)
||||||||+.+-||+-
T Consensus 411 IIFaLSNPt~~aE~tp 426 (559)
T PTZ00317 411 IIFPLSNPTSKAECTA 426 (559)
T ss_pred EEEECCCCCCCCCcCH
Confidence 9999999999999973
No 5
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=100.00 E-value=6.2e-89 Score=699.00 Aligned_cols=297 Identities=35% Similarity=0.506 Sum_probs=270.4
Q ss_pred cccHHHHHHHHHHHhhcCCC-chhHHHHHhhhhhhhhhhhHHHhhhcccccCCcccccchHHHHHHHhhhhcCCCccccc
Q 012553 85 VISQQLQEKKLMNSIRQYEV-PLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYIS 163 (461)
Q Consensus 85 v~t~e~Q~~R~~~~~~~~~~-~l~Ky~~L~~L~~~Ne~LFY~ll~~~~ee~lpivYTPtVg~ac~~~s~i~r~p~glyis 163 (461)
|+|+| |.+|++.++....+ +|++|.|+ ++|+.+||..+-.|..|+|||+||||||++|++||+.++.++
T Consensus 1 v~t~~-q~~~~~~~~~~~~~~aL~~h~~~----~~gki~~~~~~~~~~~~dl~l~YTPgVa~~~~~i~~d~~~~~----- 70 (432)
T COG0281 1 VETIE-QAERAYEQYEQLKTEALDKHEYL----DPGKILIYPTVPLHTQEDLPLAYTPGVAEACKAISEDPRKAY----- 70 (432)
T ss_pred CccHH-HHHHHHHHHhhhhhhhHHHhccC----CCCeEEEEEcccccCHhhcCcccCCchHHHHHHHHhCcchhh-----
Confidence 57889 99999999999877 99999999 899999999999999999999999999999999988777665
Q ss_pred ccCcchHHHHHhcCCCCCeeEEEEecCceeeccCCCCC-CccccchhhhhHHHhhCCCCCCceeeEEeecCCCchhcccC
Q 012553 164 LKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGC-QGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKD 242 (461)
Q Consensus 164 ~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~-~GmgI~~GKl~Ly~a~gGI~P~~~lPI~LDvGTnne~LL~D 242 (461)
.++.++++|||||||||||||||||+ .||||||||++|||+||||| +||||||+||+|+
T Consensus 71 ------------~yt~~~n~vaVvTDgtaVLGLGniGp~ag~pVmeGKa~Lfk~faGid---~~pI~ld~~~~~e----- 130 (432)
T COG0281 71 ------------SYTARGNLVAVVTDGTAVLGLGNIGPLAGKPVMEGKAVLFKAFAGID---VLPIELDVGTNNE----- 130 (432)
T ss_pred ------------hcCCCCceEEEEECCceeecccccccccCcchhhhHHHHHHHhcCCC---ceeeEeeCCChHH-----
Confidence 36777789999999999999999995 68999999999999999999 9999999999876
Q ss_pred cccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCcccHHHHHHHHc--CCCceeccCCCchhHHHHHHHHH
Q 012553 243 EFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYG--TTHLVFNDDIQGTASVVLAGVVA 320 (461)
Q Consensus 243 p~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~~lIq~EDf~~~~af~iL~ryr--~~~~~FnDDiQGTaaV~LAgll~ 320 (461)
+++||++++++||+ |++||+++|+||.+++++| .+||||||||||||+|+||||+|
T Consensus 131 -------------------i~~~Vkal~p~Fgg---inLedi~ap~cf~ie~~lr~~~~IPvFhDDqqGTaiv~lA~lln 188 (432)
T COG0281 131 -------------------IIEFVKALEPTFGG---INLEDIDAPRCFAIEERLRYRMNIPVFHDDQQGTAIVTLAALLN 188 (432)
T ss_pred -------------------HHHHHHHhhhcCCC---cceeecccchhhHHHHHHhhcCCCCcccccccHHHHHHHHHHHH
Confidence 89999999999999 9999999999999988765 68999999999999999999999
Q ss_pred HHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcC-CCChhhhhhcc-ccC
Q 012553 321 ALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD-SLQHFKKPWAH-EHE 398 (461)
Q Consensus 321 Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~-~L~~~k~~fA~-~~~ 398 (461)
|+|++|++|+|+||||+|||+||+|||++|..+| ++ .+|||+|||+|+|+++|.+ .++++|..+|. +..
T Consensus 189 alk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g-----~~----~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~ 259 (432)
T COG0281 189 ALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAG-----VK----EENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTG 259 (432)
T ss_pred HHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhC-----CC----cccEEEEecCCcccCCCcccccchHHHHHHHhhhc
Confidence 9999999999999999999999999999999874 43 3899999999999999976 36777877775 444
Q ss_pred CCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcCCCC
Q 012553 399 PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLWLIR 449 (461)
Q Consensus 399 ~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Lsnp~ 449 (461)
...+ .+++.+ ||||||+|++ |+||+|+|++|++ +|||||||||+
T Consensus 260 ~~~~-~~~~~~--adv~iG~S~~-G~~t~e~V~~Ma~---~PiIfalaNP~ 303 (432)
T COG0281 260 ERTL-DLALAG--ADVLIGVSGV-GAFTEEMVKEMAK---HPIIFALANPT 303 (432)
T ss_pred cccc-cccccC--CCEEEEcCCC-CCcCHHHHHHhcc---CCEEeecCCCC
Confidence 4443 446655 9999999998 8999999999998 49999999998
No 6
>PRK12861 malic enzyme; Reviewed
Probab=100.00 E-value=6.5e-83 Score=697.55 Aligned_cols=259 Identities=27% Similarity=0.457 Sum_probs=238.8
Q ss_pred cccCCcccccchHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeeccCCCCCCc-cccchhh
Q 012553 132 EELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQG-MGIPVGK 210 (461)
Q Consensus 132 ee~lpivYTPtVg~ac~~~s~i~r~p~glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~G-mgI~~GK 210 (461)
.++|+++||||||++|++ |+++|+++| .|+.+++.|+|||||||||||||+|++| |||||||
T Consensus 34 ~~dl~l~YtPgVa~~c~~---i~~~p~~~~--------------~~t~r~n~v~VvtdG~~vLGLGdiG~~a~~pvmeGK 96 (764)
T PRK12861 34 QRDLALAYTPGVASACEE---IAADPLNAF--------------RFTSRGNLVGVITNGTAVLGLGNIGALASKPVMEGK 96 (764)
T ss_pred hHHceeecCCchHHHHHH---HHhChHhhh--------------hhhccCcEEEEEecchhhccCCCcCcccccchHHHH
Confidence 466999999999999999 899999997 3677777899999999999999999997 9999999
Q ss_pred hhHHHhhCCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCcccHH
Q 012553 211 LALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF 290 (461)
Q Consensus 211 l~Ly~a~gGI~P~~~lPI~LDvGTnne~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~~lIq~EDf~~~~af 290 (461)
++|||+||||| +||||+ || +|| ++|| |||++++++||+ ||||||++||||
T Consensus 97 ~~L~~~~agid---~~di~~----~~----~dp---------------d~~v-~~v~a~~~~fg~---i~lED~~~p~~f 146 (764)
T PRK12861 97 AVLFKKFAGID---VFDIEI----NE----TDP---------------DKLV-DIIAGLEPTFGG---INLEDIKAPECF 146 (764)
T ss_pred HHHHhhccCCC---cccccc----CC----CCH---------------HHHH-HHHHHHHhhcCC---ceeeeccCchHH
Confidence 99999999999 555555 44 467 6888 999999999988 999999999999
Q ss_pred HHHHHHcC--CCceeccCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccce
Q 012553 291 ELLAKYGT--THLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (461)
Q Consensus 291 ~iL~ryr~--~~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~ 368 (461)
+||+|||+ +||||||||||||+|+||||+||+|++|++|+|+||||+|||+||+|||++|+. .|++++ |
T Consensus 147 ~il~~~~~~~~ipvf~DD~qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~-----~G~~~~----~ 217 (764)
T PRK12861 147 TVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGAAALACLDLLVD-----LGLPVE----N 217 (764)
T ss_pred HHHHHHHhcCCCCeeccccchHHHHHHHHHHHHHHHhCCChhHcEEEEECHhHHHHHHHHHHHH-----cCCChh----h
Confidence 99999997 799999999999999999999999999999999999999999999999999975 498744 9
Q ss_pred EEEEcCCCccccCCcCCCChhhhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcCCC
Q 012553 369 ICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLWLI 448 (461)
Q Consensus 369 i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Lsnp 448 (461)
||+||++|||+++|.+.|+++|++||++. +..+|+|||++ ||||||+|+ +|+||+|||++|++ ||||||||||
T Consensus 218 i~~~D~~Gli~~~r~~~l~~~k~~~a~~~-~~~~L~eai~~--advliG~S~-~g~ft~e~v~~Ma~---~PIIFaLsNP 290 (764)
T PRK12861 218 IWVTDIEGVVYRGRTTLMDPDKERFAQET-DARTLAEVIGG--ADVFLGLSA-GGVLKAEMLKAMAA---RPLILALANP 290 (764)
T ss_pred EEEEcCCCeeeCCCcccCCHHHHHHHhhc-CCCCHHHHHhc--CCEEEEcCC-CCCCCHHHHHHhcc---CCEEEECCCC
Confidence 99999999999999766999999999985 45799999999 899999998 88999999999997 9999999999
Q ss_pred Cchhhhh
Q 012553 449 RKFNFCS 455 (461)
Q Consensus 449 ~~~~~~~ 455 (461)
+ -||.
T Consensus 291 t--pE~~ 295 (764)
T PRK12861 291 T--PEIF 295 (764)
T ss_pred C--ccCC
Confidence 9 4885
No 7
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=100.00 E-value=2.5e-84 Score=606.07 Aligned_cols=182 Identities=65% Similarity=1.207 Sum_probs=164.2
Q ss_pred hhhhhhhhHHHhhhcccccCCcccccchHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeec
Q 012553 116 EERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILG 195 (461)
Q Consensus 116 ~~~Ne~LFY~ll~~~~ee~lpivYTPtVg~ac~~~s~i~r~p~glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILG 195 (461)
|++||+|||+++.+|++|+|||+||||||+||++||++|++|+|+|+|++|+|+|+++|+|||.++|++|||||||||||
T Consensus 1 q~~n~~Lfy~~l~~~~~e~lpivYTPtVg~ac~~~s~~~~~~~Gly~s~~d~g~i~~~l~n~~~~~v~v~VVTDG~rILG 80 (182)
T PF00390_consen 1 QDRNETLFYRLLSSHLEEMLPIVYTPTVGEACQNYSHLFRRPRGLYLSISDRGHIEEILRNWPERDVRVIVVTDGERILG 80 (182)
T ss_dssp HTTEHHHHHHHHHHTHHHHHHHHSTTCHHHHHHHHHHHGGCHHSCCCEGGGETCHHHHHTTSS-SS--EEEEE-SSSBTT
T ss_pred CCccEEEEEeehhhChHhhCceecCchHHHHHHHHHHhhccccceEEecCChHHHHHHHHhhhccCceEEEEeCchhhcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccccchhhhhHHHhhCCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCC
Q 012553 196 LGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGE 275 (461)
Q Consensus 196 LGDlG~~GmgI~~GKl~Ly~a~gGI~P~~~lPI~LDvGTnne~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp 275 (461)
|||+|++|||||+||++|||+||||||++|||||||+|||||+||+||+|+|+||+|++|++|++|+||||+||+.+|||
T Consensus 81 lGD~G~~Gm~I~~GKl~ly~~~gGI~P~~~lPv~LDvGTnn~~ll~Dp~Y~G~r~~R~~g~~y~~fvdefv~av~~~~gp 160 (182)
T PF00390_consen 81 LGDLGVNGMGIPIGKLALYTACGGIDPSRCLPVCLDVGTNNEELLNDPLYLGLRHPRVRGEEYDEFVDEFVEAVKRRFGP 160 (182)
T ss_dssp TBS-GGGGHHHHHHHHHHHHHHHS-EGGGEEEEEEESBBS-HHHHH-TT--S-SSB---THHHHHHHHHHHHHHHHHHGC
T ss_pred ccCcCcceEEeeehhhhhHHhhcCcCcccccCeEeecCcchhhhccCcchhccccCCCChhhhhhCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeeeecCCcccHHHHHHHHc
Q 012553 276 KVLIQFEDFANHNAFELLAKYG 297 (461)
Q Consensus 276 ~~lIq~EDf~~~~af~iL~ryr 297 (461)
+++||||||+++|||++|+|||
T Consensus 161 ~~~IqfEDf~~~nAf~iL~kYr 182 (182)
T PF00390_consen 161 NALIQFEDFSNPNAFRILDKYR 182 (182)
T ss_dssp TSEEEE-S--CCHHHHHHHHHT
T ss_pred CeEEEEecCCChhHHHHHHhcC
Confidence 9999999999999999999997
No 8
>PRK12862 malic enzyme; Reviewed
Probab=100.00 E-value=2.4e-81 Score=687.80 Aligned_cols=259 Identities=24% Similarity=0.387 Sum_probs=238.4
Q ss_pred cccCCcccccchHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeeccCCCCCCc-cccchhh
Q 012553 132 EELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQG-MGIPVGK 210 (461)
Q Consensus 132 ee~lpivYTPtVg~ac~~~s~i~r~p~glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~G-mgI~~GK 210 (461)
.++|+++|||||+++|++ |+++|+++| .||.++|.|||||||||||||||+|++| |||||||
T Consensus 38 ~~dl~~~ytpgv~~~~~~---i~~~~~~~~--------------~~t~~~n~v~vvtdg~~vLGlGd~G~~~~~pv~egK 100 (763)
T PRK12862 38 QRDLALAYSPGVAAPCLE---IAADPANAA--------------RYTSRGNLVAVVSNGTAVLGLGNIGPLASKPVMEGK 100 (763)
T ss_pred HHHceeeeCCchHHHHHH---HHhChHhhh--------------hcccCCcEEEEEechhhhccccccCcccccchHHHH
Confidence 466999999999999999 899999988 3788889999999999999999999997 9999999
Q ss_pred hhHHHhhCCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCC-eeeeeecCCcccH
Q 012553 211 LALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEK-VLIQFEDFANHNA 289 (461)
Q Consensus 211 l~Ly~a~gGI~P~~~lPI~LDvGTnne~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~-~lIq~EDf~~~~a 289 (461)
++|||+||||| ++|||+| |+ || ||||++|+..| |+ ..||||||++|||
T Consensus 101 ~~l~~~~~gi~---~~~i~~~----~~----d~-------------------d~~v~~v~~~~-p~f~~i~~ED~~~~~~ 149 (763)
T PRK12862 101 AVLFKKFAGID---VFDIELD----ES----DP-------------------DKLVEIVAALE-PTFGGINLEDIKAPEC 149 (763)
T ss_pred HHHHHhhcCCC---ccccccC----CC----CH-------------------HHHHHHHHHhC-CCcceeeeecccCchH
Confidence 99999999999 7777665 43 44 78888888888 76 7899999999999
Q ss_pred HHHHHHHcCC--CceeccCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccc
Q 012553 290 FELLAKYGTT--HLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 367 (461)
Q Consensus 290 f~iL~ryr~~--~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~ 367 (461)
|+||+|||++ ||||||||||||+|+||||+||+|++|++|+|+||||+|||+||+|||++|+. .|+++ +
T Consensus 150 f~i~~~~~~~~~ip~f~DD~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~~----~ 220 (763)
T PRK12862 150 FYIERELRERMKIPVFHDDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVS-----LGVKR----E 220 (763)
T ss_pred HHHHHHHHhcCCCceEecCcccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHH-----cCCCc----c
Confidence 9999999986 99999999999999999999999999999999999999999999999999987 38873 7
Q ss_pred eEEEEcCCCccccCCcCCCChhhhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcCC
Q 012553 368 KICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLWL 447 (461)
Q Consensus 368 ~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Lsn 447 (461)
||||||++|||+++|.+.|+++|++||++. +..+|+|||++ ||||||+|+ +|+||+|||++|+ +|||||||||
T Consensus 221 ~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~-~~~~l~e~~~~--~~v~iG~s~-~g~~~~~~v~~M~---~~piifalsN 293 (763)
T PRK12862 221 NIWVTDIKGVVYEGRTELMDPWKARYAQKT-DARTLAEVIEG--ADVFLGLSA-AGVLKPEMVKKMA---PRPLIFALAN 293 (763)
T ss_pred cEEEEcCCCeeeCCCCccccHHHHHHhhhc-ccCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEeCCC
Confidence 999999999999999766999999999985 45799999999 999999999 8899999999999 6999999999
Q ss_pred CCchhhhhh
Q 012553 448 IRKFNFCSL 456 (461)
Q Consensus 448 p~~~~~~~~ 456 (461)
|+ -||.-
T Consensus 294 P~--~E~~p 300 (763)
T PRK12862 294 PT--PEILP 300 (763)
T ss_pred Cc--ccCCH
Confidence 99 59863
No 9
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=100.00 E-value=1e-80 Score=680.38 Aligned_cols=259 Identities=28% Similarity=0.449 Sum_probs=237.2
Q ss_pred cccCCcccccchHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeeccCCCCCC-ccccchhh
Q 012553 132 EELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQ-GMGIPVGK 210 (461)
Q Consensus 132 ee~lpivYTPtVg~ac~~~s~i~r~p~glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~-GmgI~~GK 210 (461)
.++|+++||||||++|++ |+++|+++| ++ +.+++.|+|||||||||||||+|++ ||||||||
T Consensus 30 ~~dl~~~Ytpgv~~~c~~---i~~~~~~~~-~~-------------t~~~n~v~vvtdg~~vLGlGd~G~~a~~pv~egK 92 (752)
T PRK07232 30 QRDLSLAYSPGVAAPCLE---IAKDPADAY-KY-------------TARGNLVAVISNGTAVLGLGNIGALASKPVMEGK 92 (752)
T ss_pred hhhcceecCCchHHHHHH---HHhChhhcc-cc-------------ccCCcEEEEEccchhhccccccccccCccHHHHH
Confidence 467999999999999997 899999999 54 5555679999999999999999999 79999999
Q ss_pred hhHHHhhCCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCe-eeeeecCCcccH
Q 012553 211 LALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKV-LIQFEDFANHNA 289 (461)
Q Consensus 211 l~Ly~a~gGI~P~~~lPI~LDvGTnne~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~~-lIq~EDf~~~~a 289 (461)
++|||+||||| ++|||+| |+ | +||||++|+..| |.. +||||||++|||
T Consensus 93 ~~l~~~~~gid---~~~i~~~----~~----d-------------------~de~v~~v~~~~-p~~g~i~~ED~~~p~~ 141 (752)
T PRK07232 93 GVLFKKFAGID---VFDIEVD----EE----D-------------------PDKFIEAVAALE-PTFGGINLEDIKAPEC 141 (752)
T ss_pred HHHHHhhcCCC---ccccccC----CC----C-------------------HHHHHHHHHHhC-CCccEEeeeecCCchH
Confidence 99999999999 7766665 43 2 799999999988 664 899999999999
Q ss_pred HHHHHHHcCC--CceeccCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccc
Q 012553 290 FELLAKYGTT--HLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 367 (461)
Q Consensus 290 f~iL~ryr~~--~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~ 367 (461)
|+||+|||++ ||||||||||||+|+||||+||+|++|++|+|+||||+|||+||+|||+||.. .|++ ++
T Consensus 142 f~i~~~~~~~~~ip~f~DD~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~----~~ 212 (752)
T PRK07232 142 FYIEEKLRERMDIPVFHDDQHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVA-----LGAK----KE 212 (752)
T ss_pred HHHHHHHHHhcCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHH-----cCCC----cc
Confidence 9999999974 89999999999999999999999999999999999999999999999999986 3887 68
Q ss_pred eEEEEcCCCccccCCcCCCChhhhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcCC
Q 012553 368 KICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLWL 447 (461)
Q Consensus 368 ~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Lsn 447 (461)
|||+||++|||+++|.+.|+++|++||++ .+..+|+|||++ ||||||+|+ +|+||+|+|++|++ |||||||||
T Consensus 213 ~i~~~D~~G~i~~~r~~~~~~~k~~~a~~-~~~~~l~~~i~~--~~v~iG~s~-~g~~~~~~v~~M~~---~piifalsN 285 (752)
T PRK07232 213 NIIVCDSKGVIYKGRTEGMDEWKAAYAVD-TDARTLAEAIEG--ADVFLGLSA-AGVLTPEMVKSMAD---NPIIFALAN 285 (752)
T ss_pred cEEEEcCCCeecCCCcccccHHHHHHhcc-CCCCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhcc---CCEEEecCC
Confidence 99999999999999966699999999998 445799999999 999999999 88999999999986 999999999
Q ss_pred CCchhhhhh
Q 012553 448 IRKFNFCSL 456 (461)
Q Consensus 448 p~~~~~~~~ 456 (461)
|+- ||.-
T Consensus 286 P~~--E~~p 292 (752)
T PRK07232 286 PDP--EITP 292 (752)
T ss_pred CCc--cCCH
Confidence 994 9863
No 10
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=100.00 E-value=6.7e-51 Score=398.68 Aligned_cols=148 Identities=47% Similarity=0.689 Sum_probs=133.9
Q ss_pred CCchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCC
Q 012553 307 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 386 (461)
Q Consensus 307 iQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L 386 (461)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|+++ |+|++||++||||+|++|||+++|. +|
T Consensus 1 iqGTaaV~lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~-G~~~~eA~~~i~lvD~~Gll~~~r~-~l 78 (255)
T PF03949_consen 1 IQGTAAVVLAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVRE-GLSEEEARKRIWLVDSKGLLTDDRE-DL 78 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCT-TS-HHHHHTTEEEEETTEEEBTTTS-SH
T ss_pred CchhHHHHHHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHh-cCCHHHHhccEEEEeccceEeccCc-cC
Confidence 899999999999999999999999999999999999999999999999986 9999999999999999999999995 49
Q ss_pred ChhhhhhccccCCC---CCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcCCCCchhhhhh
Q 012553 387 QHFKKPWAHEHEPV---NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLWLIRKFNFCSL 456 (461)
Q Consensus 387 ~~~k~~fA~~~~~~---~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Lsnp~~~~~~~~ 456 (461)
+++|++||++.++. .+|+|||+++|||||||+|+++|+||||+||+|+++||||||||||||+...||.-
T Consensus 79 ~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~p 151 (255)
T PF03949_consen 79 NPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNPTPKAECTP 151 (255)
T ss_dssp SHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-H
T ss_pred ChhhhhhhccCcccccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCCCCcccCCH
Confidence 99999999987665 49999999999999999999999999999999999999999999999999999963
No 11
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=100.00 E-value=4.1e-50 Score=392.81 Aligned_cols=148 Identities=43% Similarity=0.522 Sum_probs=142.5
Q ss_pred CCchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCC
Q 012553 307 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 386 (461)
Q Consensus 307 iQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L 386 (461)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|+++ |+|+|||++|||++|++|||+++|.+ |
T Consensus 1 iqGTaaV~lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~-Gls~e~A~~~i~~vD~~Gll~~~r~~-l 78 (254)
T cd00762 1 IQGTASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVKE-GISKEEACKRIWXVDRKGLLVKNRKE-T 78 (254)
T ss_pred CchhHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHhc-CCCHHHHhccEEEECCCCeEeCCCCc-c
Confidence 899999999999999999999999999999999999999999999999874 99999999999999999999999976 8
Q ss_pred Chhhhh---hccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcCCCCchhhhhh
Q 012553 387 QHFKKP---WAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLWLIRKFNFCSL 456 (461)
Q Consensus 387 ~~~k~~---fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Lsnp~~~~~~~~ 456 (461)
+++|++ |+++.++.++|+|||+.+|||||||+|+++|+||+|||++|+++||||||||||||+.+.||+-
T Consensus 79 ~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tp 151 (254)
T cd00762 79 CPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTA 151 (254)
T ss_pred CHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCH
Confidence 999999 8888777789999999999999999999999999999999999999999999999999999973
No 12
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=100.00 E-value=1.6e-49 Score=393.33 Aligned_cols=148 Identities=51% Similarity=0.739 Sum_probs=142.7
Q ss_pred CCchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCC
Q 012553 307 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 386 (461)
Q Consensus 307 iQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L 386 (461)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|++ +|+|+|||+++||++|++|||+++|.+ |
T Consensus 1 IqGTa~V~lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~-~G~~~eeA~~~i~~vD~~Gll~~~r~~-l 78 (279)
T cd05312 1 IQGTAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVR-EGLSEEEARKKIWLVDSKGLLTKDRKD-L 78 (279)
T ss_pred CchHHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHH-cCCChhhccCeEEEEcCCCeEeCCCCc-c
Confidence 89999999999999999999999999999999999999999999999987 599999999999999999999999976 9
Q ss_pred ChhhhhhccccC--CCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcCCCCchhhhhh
Q 012553 387 QHFKKPWAHEHE--PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLWLIRKFNFCSL 456 (461)
Q Consensus 387 ~~~k~~fA~~~~--~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Lsnp~~~~~~~~ 456 (461)
+++|++||++.+ +..+|+|+|+.+|||||||+|+++|+||+|+||+|+++|+||||||||||+.+.||+-
T Consensus 79 ~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~p 150 (279)
T cd05312 79 TPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTA 150 (279)
T ss_pred hHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCH
Confidence 999999999866 6689999999999999999999999999999999999999999999999999999973
No 13
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=99.95 E-value=9.1e-28 Score=231.03 Aligned_cols=132 Identities=36% Similarity=0.427 Sum_probs=118.3
Q ss_pred CCchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCC
Q 012553 307 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 386 (461)
Q Consensus 307 iQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L 386 (461)
|||||+|++||+++|++..|++++|+||||+|||+||.|||++|.. .|++ +++||++|++|+++.+|.+.|
T Consensus 1 ~qgt~~v~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~-----~G~~----~~~i~ivdr~gl~~~~r~~~L 71 (226)
T cd05311 1 QHGTAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLA-----AGAK----PENIVVVDSKGVIYEGREDDL 71 (226)
T ss_pred CCchHHHHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHH-----cCcC----cceEEEEeCCCccccccchhh
Confidence 7999999999999999999999999999999999999999999975 3876 679999999999999997669
Q ss_pred Chhhhhhcccc--CCC-CCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcCCCCchhhhh
Q 012553 387 QHFKKPWAHEH--EPV-NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLWLIRKFNFCS 455 (461)
Q Consensus 387 ~~~k~~fA~~~--~~~-~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Lsnp~~~~~~~ 455 (461)
.++|++|+++. ... .+|.|++++ ||+|||+|+ +|+||+++++.|+ ++||||+||||+ .||.
T Consensus 72 ~~~~~~la~~~~~~~~~~~l~~~l~~--~dvlIgaT~-~G~~~~~~l~~m~---~~~ivf~lsnP~--~e~~ 135 (226)
T cd05311 72 NPDKNEIAKETNPEKTGGTLKEALKG--ADVFIGVSR-PGVVKKEMIKKMA---KDPIVFALANPV--PEIW 135 (226)
T ss_pred hHHHHHHHHHhccCcccCCHHHHHhc--CCEEEeCCC-CCCCCHHHHHhhC---CCCEEEEeCCCC--CcCC
Confidence 99999998864 222 478899987 999999999 7899999999998 599999999998 3763
No 14
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.92 E-value=1.4e-08 Score=83.77 Aligned_cols=86 Identities=37% Similarity=0.412 Sum_probs=75.8
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCCh
Q 012553 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (461)
Q Consensus 309 GTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~ 388 (461)
+||.++++++..+.+..+.+++..+++|+|+|.+|.+++..+.+. | .++++++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~-----~------~~~v~v~~r-------------- 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADE-----G------GKKVVLCDR-------------- 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHc-----C------CCEEEEEcC--------------
Confidence 699999999999999999999999999999999999999998763 2 357999988
Q ss_pred hhhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcC
Q 012553 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLW 446 (461)
Q Consensus 389 ~k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Ls 446 (461)
|++|++++.++.|+++ .|+..++.|+||.++
T Consensus 56 ------------------------di~i~~~~~~~~~~~~---~~~~~~~~~~v~~~a 86 (86)
T cd05191 56 ------------------------DILVTATPAGVPVLEE---ATAKINEGAVVIDLA 86 (86)
T ss_pred ------------------------CEEEEcCCCCCCchHH---HHHhcCCCCEEEecC
Confidence 9999999999888888 555556799999885
No 15
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.65 E-value=0.00018 Score=75.58 Aligned_cols=124 Identities=23% Similarity=0.295 Sum_probs=85.0
Q ss_pred CchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCC
Q 012553 308 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (461)
Q Consensus 308 QGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~ 387 (461)
.+..+|+.+|+-.|.+..| ++.+.+++|+|+|..|..++..+... |. .+|+++|+.. .| ..
T Consensus 158 ~~~vSv~~~Av~la~~~~~-~l~~~~VlViGaG~iG~~~a~~L~~~-----G~------~~V~v~~rs~----~r---a~ 218 (417)
T TIGR01035 158 AGAVSISSAAVELAERIFG-SLKGKKALLIGAGEMGELVAKHLLRK-----GV------GKILIANRTY----ER---AE 218 (417)
T ss_pred CCCcCHHHHHHHHHHHHhC-CccCCEEEEECChHHHHHHHHHHHHC-----CC------CEEEEEeCCH----HH---HH
Confidence 5666777777766766655 48889999999999999999888642 53 5788888742 11 11
Q ss_pred hhhhhhccccCCCCCHHHhhcccCCcEEEeccCCC-CCCCHHHHHHHhcCCCCc-EEEEcCCCCchh
Q 012553 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEVV-FQALLWLIRKFN 452 (461)
Q Consensus 388 ~~k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~erP-IIF~Lsnp~~~~ 452 (461)
...+.+....-...++.+++.. +|++|-+++.+ ..+++++++.+.....+| +|+-+++|+++-
T Consensus 219 ~la~~~g~~~i~~~~l~~~l~~--aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~Prdid 283 (417)
T TIGR01035 219 DLAKELGGEAVKFEDLEEYLAE--ADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAVPRDVD 283 (417)
T ss_pred HHHHHcCCeEeeHHHHHHHHhh--CCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 1111111111112467788886 99999987544 478999999875433366 899999999764
No 16
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.58 E-value=0.00037 Score=70.41 Aligned_cols=139 Identities=21% Similarity=0.303 Sum_probs=89.9
Q ss_pred ccHHHHHHHHcCCCceeccCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhcc
Q 012553 287 HNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 366 (461)
Q Consensus 287 ~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~ 366 (461)
.+||++=++.|.+.-+. .+-.+|+.+++-.|.+..|. +.+.+|+|+|+|..|..+++.+... | .
T Consensus 139 ~~a~~~~k~vr~et~i~----~~~~sv~~~Av~~a~~~~~~-l~~~~V~ViGaG~iG~~~a~~L~~~-----g------~ 202 (311)
T cd05213 139 QKAIKVGKRVRTETGIS----RGAVSISSAAVELAEKIFGN-LKGKKVLVIGAGEMGELAAKHLAAK-----G------V 202 (311)
T ss_pred HHHHHHHHHHhhhcCCC----CCCcCHHHHHHHHHHHHhCC-ccCCEEEEECcHHHHHHHHHHHHHc-----C------C
Confidence 46777777777554443 34456666666666665555 8899999999999999999888642 3 3
Q ss_pred ceEEEEcCCCccccCCcCCCChhhhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCC--CCcEEEE
Q 012553 367 KKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN--EVVFQAL 444 (461)
Q Consensus 367 ~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~--erPIIF~ 444 (461)
++|+++|+. ..| .....+.|-.......++.++++. +|++|-+++.+.. +++++.+.+.. ..-+|+=
T Consensus 203 ~~V~v~~r~----~~r---a~~la~~~g~~~~~~~~~~~~l~~--aDvVi~at~~~~~--~~~~~~~~~~~~~~~~~viD 271 (311)
T cd05213 203 AEITIANRT----YER---AEELAKELGGNAVPLDELLELLNE--ADVVISATGAPHY--AKIVERAMKKRSGKPRLIVD 271 (311)
T ss_pred CEEEEEeCC----HHH---HHHHHHHcCCeEEeHHHHHHHHhc--CCEEEECCCCCch--HHHHHHHHhhCCCCCeEEEE
Confidence 579999873 111 111222221111112357788876 8999999887744 67666654322 2347889
Q ss_pred cCCCCchh
Q 012553 445 LWLIRKFN 452 (461)
Q Consensus 445 Lsnp~~~~ 452 (461)
+|||+++-
T Consensus 272 lavPrdi~ 279 (311)
T cd05213 272 LAVPRDIE 279 (311)
T ss_pred eCCCCCCc
Confidence 99999864
No 17
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.50 E-value=0.00049 Score=72.44 Aligned_cols=124 Identities=25% Similarity=0.348 Sum_probs=81.9
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCCh
Q 012553 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (461)
Q Consensus 309 GTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~ 388 (461)
+..+|+.+|+--|.+..| ++.+.+++|+|||..|..++..+.. .| .++|+++|+.. .| ...
T Consensus 161 ~~~Sv~~~Av~~a~~~~~-~~~~~~vlViGaG~iG~~~a~~L~~-----~G------~~~V~v~~r~~----~r---a~~ 221 (423)
T PRK00045 161 GAVSVASAAVELAKQIFG-DLSGKKVLVIGAGEMGELVAKHLAE-----KG------VRKITVANRTL----ER---AEE 221 (423)
T ss_pred CCcCHHHHHHHHHHHhhC-CccCCEEEEECchHHHHHHHHHHHH-----CC------CCeEEEEeCCH----HH---HHH
Confidence 355666666655544444 6888999999999999999988753 25 35789887741 22 111
Q ss_pred hhhhhccccCCCCCHHHhhcccCCcEEEeccCCC-CCCCHHHHHHHhcC--CCCcEEEEcCCCCchhh
Q 012553 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASF--NEVVFQALLWLIRKFNF 453 (461)
Q Consensus 389 ~k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~--~erPIIF~Lsnp~~~~~ 453 (461)
..+.|........++.+++.. +|++|.+++.+ ..+++++++.+.+. ....+|+=|++|+++-.
T Consensus 222 la~~~g~~~~~~~~~~~~l~~--aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Prdid~ 287 (423)
T PRK00045 222 LAEEFGGEAIPLDELPEALAE--ADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPRDIEP 287 (423)
T ss_pred HHHHcCCcEeeHHHHHHHhcc--CCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCCCCcc
Confidence 122221111112456777775 89999987655 47899999997532 23468999999998654
No 18
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.48 E-value=0.0014 Score=69.83 Aligned_cols=149 Identities=20% Similarity=0.263 Sum_probs=100.0
Q ss_pred CCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCcccHHHH---------------------HHHHc-------CCCcee
Q 012553 252 RATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFEL---------------------LAKYG-------TTHLVF 303 (461)
Q Consensus 252 R~~g~~Y~~~idefv~av~~~fGp~~lIq~EDf~~~~af~i---------------------L~ryr-------~~~~~F 303 (461)
..+-++|...+++.+ ..+.|+.+| |.+..-...+ ..||+ ..+|+|
T Consensus 105 ~~~~~ey~~~~~~~l----~~~~p~iii---DdGgdl~~~~~~~~~~~~~~i~G~~EeTttGv~rl~~~~~~~~l~~Pv~ 177 (425)
T PRK05476 105 GETLEEYWECIERAL----DGHGPNMIL---DDGGDLTLLVHTERPELLANIKGVTEETTTGVHRLYAMAKDGALKFPAI 177 (425)
T ss_pred CCCHHHHHHHHHHHh----cCCCCCEEE---ecccHHHHHHHHHhhHhHhccEeeeecchHHHHHHHHHHHcCCCCCCEE
Confidence 345678888777765 345576665 5555444433 13453 369999
Q ss_pred c----------cCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEc
Q 012553 304 N----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVD 373 (461)
Q Consensus 304 n----------DDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvD 373 (461)
| |.-.||+--++-|+.. .++..+.+.+++|+|+|..|.++|..+... |. +++++|
T Consensus 178 ~vn~s~~K~~~dn~~gt~~s~~~ai~r---at~~~l~Gk~VlViG~G~IG~~vA~~lr~~-----Ga-------~ViV~d 242 (425)
T PRK05476 178 NVNDSVTKSKFDNRYGTGESLLDGIKR---ATNVLIAGKVVVVAGYGDVGKGCAQRLRGL-----GA-------RVIVTE 242 (425)
T ss_pred ecCCcccCccccccHHHHhhhHHHHHH---hccCCCCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEEc
Confidence 8 6678898777666654 346678999999999999999999988642 52 688888
Q ss_pred CCCccccCCcCCCChhhhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhc
Q 012553 374 SKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMAS 435 (461)
Q Consensus 374 s~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~ 435 (461)
.+- .|. +...+ ..-...++.++++. +|++|-+++..++|+.+.++.|..
T Consensus 243 ~dp----~ra--~~A~~-----~G~~v~~l~eal~~--aDVVI~aTG~~~vI~~~~~~~mK~ 291 (425)
T PRK05476 243 VDP----ICA--LQAAM-----DGFRVMTMEEAAEL--GDIFVTATGNKDVITAEHMEAMKD 291 (425)
T ss_pred CCc----hhh--HHHHh-----cCCEecCHHHHHhC--CCEEEECCCCHHHHHHHHHhcCCC
Confidence 642 111 11111 11112357888875 899998887777888888888864
No 19
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.22 E-value=0.00021 Score=63.79 Aligned_cols=105 Identities=23% Similarity=0.350 Sum_probs=69.4
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccc---cCCCCCH
Q 012553 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNL 403 (461)
Q Consensus 327 ~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~---~~~~~~L 403 (461)
.++++.+++|+|||.+|-+++..|... | .++|+++++. .+| .....+.|... .-...++
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~-----g------~~~i~i~nRt----~~r---a~~l~~~~~~~~~~~~~~~~~ 69 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAAL-----G------AKEITIVNRT----PER---AEALAEEFGGVNIEAIPLEDL 69 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHT-----T------SSEEEEEESS----HHH---HHHHHHHHTGCSEEEEEGGGH
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHc-----C------CCEEEEEECC----HHH---HHHHHHHcCccccceeeHHHH
Confidence 378999999999999999999888653 5 4689999873 222 22333333110 1123456
Q ss_pred HHhhcccCCcEEEeccCCCC-CCCHHHHHHHhcCCCCcEEEEcCCCCchhh
Q 012553 404 LDAVKVIKPTILIGSSGVGR-TFTKEVIEAMASFNEVVFQALLWLIRKFNF 453 (461)
Q Consensus 404 ~eaV~~vkptvLIG~S~~~g-~Ft~evv~~Ma~~~erPIIF~Lsnp~~~~~ 453 (461)
.+.++. +|++|-+++.+. .++++.++..... ..+||=||+|++.-.
T Consensus 70 ~~~~~~--~DivI~aT~~~~~~i~~~~~~~~~~~--~~~v~Dla~Pr~i~~ 116 (135)
T PF01488_consen 70 EEALQE--ADIVINATPSGMPIITEEMLKKASKK--LRLVIDLAVPRDIDP 116 (135)
T ss_dssp CHHHHT--ESEEEE-SSTTSTSSTHHHHTTTCHH--CSEEEES-SS-SB-T
T ss_pred HHHHhh--CCeEEEecCCCCcccCHHHHHHHHhh--hhceeccccCCCCCh
Confidence 677776 999999887663 7888887764321 249999999988653
No 20
>PLN00203 glutamyl-tRNA reductase
Probab=97.13 E-value=0.0014 Score=71.44 Aligned_cols=126 Identities=21% Similarity=0.320 Sum_probs=83.9
Q ss_pred chhHHHHHHHHHHHHHhCC-CcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCC
Q 012553 309 GTASVVLAGVVAALKLIGG-TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (461)
Q Consensus 309 GTaaV~LAgll~Alk~~g~-~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~ 387 (461)
|--+|+-+|+=-|.+..|. +|.+.+|+|+|||..|..+++.+.. .| .++|+++++. ..| ..
T Consensus 243 ~~vSv~s~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~-----~G------~~~V~V~nRs----~er---a~ 304 (519)
T PLN00203 243 GAVSVSSAAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVS-----KG------CTKMVVVNRS----EER---VA 304 (519)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHh-----CC------CCeEEEEeCC----HHH---HH
Confidence 3445555566666666664 6999999999999999999887753 25 3579988874 122 22
Q ss_pred hhhhhhcc---ccCCCCCHHHhhcccCCcEEEeccCCC-CCCCHHHHHHHhcCC---CCc-EEEEcCCCCchhhh
Q 012553 388 HFKKPWAH---EHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFN---EVV-FQALLWLIRKFNFC 454 (461)
Q Consensus 388 ~~k~~fA~---~~~~~~~L~eaV~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~---erP-IIF~Lsnp~~~~~~ 454 (461)
.....|-. ......++.++++. +|++|.+++.+ .++++++++.|-+.. .+| +|+=||.|++.-.|
T Consensus 305 ~La~~~~g~~i~~~~~~dl~~al~~--aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdIdp~ 377 (519)
T PLN00203 305 ALREEFPDVEIIYKPLDEMLACAAE--ADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPRNVGAC 377 (519)
T ss_pred HHHHHhCCCceEeecHhhHHHHHhc--CCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCCccc
Confidence 22222210 01123467788876 99999876443 489999999985321 244 67789999987654
No 21
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.13 E-value=0.0045 Score=64.23 Aligned_cols=116 Identities=17% Similarity=0.230 Sum_probs=83.0
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCCh
Q 012553 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (461)
Q Consensus 310 TaaV~LAgll~Alk~~g~~l~d~riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~ 388 (461)
||++..+++--|.+..|..|++.+++|.|| |+.|..+|++|... .| .++++++++. ..| +..
T Consensus 134 T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~----~g------v~~lilv~R~----~~r---l~~ 196 (340)
T PRK14982 134 TAYVICRQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAK----TG------VAELLLVARQ----QER---LQE 196 (340)
T ss_pred HHHHHHHHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhh----CC------CCEEEEEcCC----HHH---HHH
Confidence 788888899999999999999999999999 89999999999642 13 3578888764 112 333
Q ss_pred hhhhhccccCCCCCHHHhhcccCCcEEEeccCCC-C-CCCHHHHHHHhcCCCCcEEEEcCCCCchh
Q 012553 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVG-R-TFTKEVIEAMASFNEVVFQALLWLIRKFN 452 (461)
Q Consensus 389 ~k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~-g-~Ft~evv~~Ma~~~erPIIF~Lsnp~~~~ 452 (461)
.+.++.. ....++.+++.. +|++|-+++.+ . .++++.++ +.=+|+=+|.|++..
T Consensus 197 La~el~~--~~i~~l~~~l~~--aDiVv~~ts~~~~~~I~~~~l~------~~~~viDiAvPRDVd 252 (340)
T PRK14982 197 LQAELGG--GKILSLEEALPE--ADIVVWVASMPKGVEIDPETLK------KPCLMIDGGYPKNLD 252 (340)
T ss_pred HHHHhcc--ccHHhHHHHHcc--CCEEEECCcCCcCCcCCHHHhC------CCeEEEEecCCCCCC
Confidence 3333321 123468888887 99999887764 3 27887662 234566789998864
No 22
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.12 E-value=0.0059 Score=64.89 Aligned_cols=117 Identities=18% Similarity=0.214 Sum_probs=83.1
Q ss_pred CCCceec----------cCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccc
Q 012553 298 TTHLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 367 (461)
Q Consensus 298 ~~~~~Fn----------DDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~ 367 (461)
..+|+|+ |...||+--++-+++. .++..+.+.+++|+|+|..|.++|..+... | |
T Consensus 162 l~~Pv~~vnds~~K~~~dn~~g~g~s~~~~i~r---~t~~~l~GktVvViG~G~IG~~va~~ak~~-----G-----a-- 226 (413)
T cd00401 162 LKFPAINVNDSVTKSKFDNLYGCRESLIDGIKR---ATDVMIAGKVAVVAGYGDVGKGCAQSLRGQ-----G-----A-- 226 (413)
T ss_pred CCCCEEEecchhhcccccccchhchhhHHHHHH---hcCCCCCCCEEEEECCCHHHHHHHHHHHHC-----C-----C--
Confidence 3788885 6779999988877775 567789999999999999999999877542 5 2
Q ss_pred eEEEEcCCCccccCCcCCCChhhhhhcccc-CCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcC
Q 012553 368 KICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLW 446 (461)
Q Consensus 368 ~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~-~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Ls 446 (461)
+++++|.+ +.+...|+.. -...++.++++. .|++|-+++..++|+++.++.|.. .-+|.-.+
T Consensus 227 ~ViV~d~d------------~~R~~~A~~~G~~~~~~~e~v~~--aDVVI~atG~~~~i~~~~l~~mk~---GgilvnvG 289 (413)
T cd00401 227 RVIVTEVD------------PICALQAAMEGYEVMTMEEAVKE--GDIFVTTTGNKDIITGEHFEQMKD---GAIVCNIG 289 (413)
T ss_pred EEEEEECC------------hhhHHHHHhcCCEEccHHHHHcC--CCEEEECCCCHHHHHHHHHhcCCC---CcEEEEeC
Confidence 57777763 1122233321 111246788876 899999998888899888888865 44554333
No 23
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.10 E-value=0.0024 Score=67.86 Aligned_cols=136 Identities=22% Similarity=0.316 Sum_probs=92.8
Q ss_pred cccHHHHHHHHcCC--CceeccCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChh
Q 012553 286 NHNAFELLAKYGTT--HLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVE 363 (461)
Q Consensus 286 ~~~af~iL~ryr~~--~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~e 363 (461)
-..||..=+|.|.+ |. .|-.+|.-|++--|-++.|. |++.+++|+|||..|..+|+.|... |
T Consensus 138 FqkAi~~gKrvRseT~I~------~~~VSi~saAv~lA~~~~~~-L~~~~vlvIGAGem~~lva~~L~~~-----g---- 201 (414)
T COG0373 138 FQKAISVGKRVRSETGIG------KGAVSISSAAVELAKRIFGS-LKDKKVLVIGAGEMGELVAKHLAEK-----G---- 201 (414)
T ss_pred HHHHHHHHHHhhcccCCC------CCccchHHHHHHHHHHHhcc-cccCeEEEEcccHHHHHHHHHHHhC-----C----
Confidence 35677777777753 31 23445555666666666555 9999999999999999999988763 5
Q ss_pred hccceEEEEcCCCccccCCcCCCChhhhhhccc----cCCCCCHHHhhcccCCcEEEecc-CCCCCCCHHHHHHHhcCCC
Q 012553 364 ETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLLDAVKVIKPTILIGSS-GVGRTFTKEVIEAMASFNE 438 (461)
Q Consensus 364 eA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~----~~~~~~L~eaV~~vkptvLIG~S-~~~g~Ft~evv~~Ma~~~e 438 (461)
.++|+++.+ |..|. +.+|+. .-....|.+.+.. .||+|-.+ ++.-+++.+.++.-.+...
T Consensus 202 --~~~i~IaNR----T~erA-------~~La~~~~~~~~~l~el~~~l~~--~DvVissTsa~~~ii~~~~ve~a~~~r~ 266 (414)
T COG0373 202 --VKKITIANR----TLERA-------EELAKKLGAEAVALEELLEALAE--ADVVISSTSAPHPIITREMVERALKIRK 266 (414)
T ss_pred --CCEEEEEcC----CHHHH-------HHHHHHhCCeeecHHHHHHhhhh--CCEEEEecCCCccccCHHHHHHHHhccc
Confidence 368888876 33221 223332 1223567777877 89988654 4446899999988765444
Q ss_pred CcEEEEcCCCCchh
Q 012553 439 VVFQALLWLIRKFN 452 (461)
Q Consensus 439 rPIIF~Lsnp~~~~ 452 (461)
+=+||=++||+++-
T Consensus 267 ~~livDiavPRdie 280 (414)
T COG0373 267 RLLIVDIAVPRDVE 280 (414)
T ss_pred CeEEEEecCCCCCC
Confidence 45999999999864
No 24
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.09 E-value=0.0035 Score=58.74 Aligned_cols=91 Identities=21% Similarity=0.278 Sum_probs=70.5
Q ss_pred HHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhcc
Q 012553 317 GVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 395 (461)
Q Consensus 317 gll~Alk~~g~~l~d~riv~~GAGs-AgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~ 395 (461)
+.+-.++-...+|.+.+++|+|+|. +|..+|+.|... | + ++++++++
T Consensus 30 a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~-----g-----~--~V~v~~r~-------------------- 77 (168)
T cd01080 30 GILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNR-----N-----A--TVTVCHSK-------------------- 77 (168)
T ss_pred HHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhC-----C-----C--EEEEEECC--------------------
Confidence 3344455556789999999999997 699999888642 4 2 58888864
Q ss_pred ccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcCCCCch
Q 012553 396 EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLWLIRKF 451 (461)
Q Consensus 396 ~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Lsnp~~~ 451 (461)
..+|.+.++. +|++|..++.+..|++++++. .-+|+=++.|++.
T Consensus 78 ----~~~l~~~l~~--aDiVIsat~~~~ii~~~~~~~------~~viIDla~prdv 121 (168)
T cd01080 78 ----TKNLKEHTKQ--ADIVIVAVGKPGLVKGDMVKP------GAVVIDVGINRVP 121 (168)
T ss_pred ----chhHHHHHhh--CCEEEEcCCCCceecHHHccC------CeEEEEccCCCcc
Confidence 0357788887 999999998888999997642 4789999999864
No 25
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.87 E-value=0.0033 Score=66.61 Aligned_cols=114 Identities=15% Similarity=0.241 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhh
Q 012553 312 SVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK 391 (461)
Q Consensus 312 aV~LAgll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~ 391 (461)
+|+-+|+=-|-+.. .++++.+++|+|||.+|-.+|..+.. .|. ++|+++.+. .+|.. ....
T Consensus 163 Sv~~~Av~la~~~~-~~l~~kkvlviGaG~~a~~va~~L~~-----~g~------~~I~V~nRt----~~ra~---~La~ 223 (414)
T PRK13940 163 SVAFSAITLAKRQL-DNISSKNVLIIGAGQTGELLFRHVTA-----LAP------KQIMLANRT----IEKAQ---KITS 223 (414)
T ss_pred CHHHHHHHHHHHHh-cCccCCEEEEEcCcHHHHHHHHHHHH-----cCC------CEEEEECCC----HHHHH---HHHH
Confidence 44444444444443 35889999999999999999988754 253 589988873 22211 1122
Q ss_pred hhc-cccCCCCCHHHhhcccCCcEEEeccCCCC-CCCHHHHHHHhcCCCCcE-EEEcCCCCchh
Q 012553 392 PWA-HEHEPVNNLLDAVKVIKPTILIGSSGVGR-TFTKEVIEAMASFNEVVF-QALLWLIRKFN 452 (461)
Q Consensus 392 ~fA-~~~~~~~~L~eaV~~vkptvLIG~S~~~g-~Ft~evv~~Ma~~~erPI-IF~Lsnp~~~~ 452 (461)
.|. ....+..+|.+++.. .|++|-+++.+. ++|++.++ .+|+ |+=||+|++.-
T Consensus 224 ~~~~~~~~~~~~l~~~l~~--aDiVI~aT~a~~~vi~~~~~~------~~~~~~iDLavPRdid 279 (414)
T PRK13940 224 AFRNASAHYLSELPQLIKK--ADIIIAAVNVLEYIVTCKYVG------DKPRVFIDISIPQALD 279 (414)
T ss_pred HhcCCeEecHHHHHHHhcc--CCEEEECcCCCCeeECHHHhC------CCCeEEEEeCCCCCCC
Confidence 221 111123567788876 999998876664 67877653 3665 57899999875
No 26
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.79 E-value=0.021 Score=60.64 Aligned_cols=108 Identities=22% Similarity=0.257 Sum_probs=73.4
Q ss_pred CCceec----------cCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccce
Q 012553 299 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (461)
Q Consensus 299 ~~~~Fn----------DDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~ 368 (461)
.+|+|+ |.-.||+--++-+++ |.++..+...+++|+|+|..|.++|..+... |. +
T Consensus 156 ~~Pvi~vnds~~K~~fDn~yg~g~s~~~~i~---r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~-----Ga-------~ 220 (406)
T TIGR00936 156 KFPAINVNDAYTKSLFDNRYGTGQSTIDGIL---RATNLLIAGKTVVVAGYGWCGKGIAMRARGM-----GA-------R 220 (406)
T ss_pred CCcEEEecchhhchhhhcccccchhHHHHHH---HhcCCCCCcCEEEEECCCHHHHHHHHHHhhC-----cC-------E
Confidence 789997 777999977776655 4567778999999999999999999977532 52 5
Q ss_pred EEEEcCCCccccCCcCCCChhhhhhcc-ccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhc
Q 012553 369 ICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMAS 435 (461)
Q Consensus 369 i~lvDs~GLi~~~R~~~L~~~k~~fA~-~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~ 435 (461)
++++|.+- .| ...|+ ..-...++.|+++. .|++|-+++..++++++.+..|..
T Consensus 221 ViV~d~dp----~r--------~~~A~~~G~~v~~leeal~~--aDVVItaTG~~~vI~~~~~~~mK~ 274 (406)
T TIGR00936 221 VIVTEVDP----IR--------ALEAAMDGFRVMTMEEAAKI--GDIFITATGNKDVIRGEHFENMKD 274 (406)
T ss_pred EEEEeCCh----hh--------HHHHHhcCCEeCCHHHHHhc--CCEEEECCCCHHHHHHHHHhcCCC
Confidence 88887632 11 11111 11112346677765 788877776666777777776654
No 27
>PRK09414 glutamate dehydrogenase; Provisional
Probab=96.76 E-value=0.056 Score=58.18 Aligned_cols=178 Identities=16% Similarity=0.109 Sum_probs=120.5
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCcc--cHHHHHHHHcCC---C-------cee----ccCCCchhHHHHH
Q 012553 253 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANH--NAFELLAKYGTT---H-------LVF----NDDIQGTASVVLA 316 (461)
Q Consensus 253 ~~g~~Y~~~idefv~av~~~fGp~~lIq~EDf~~~--~af~iL~ryr~~---~-------~~F----nDDiQGTaaV~LA 316 (461)
.+..|-..|...|+.++.+.+||..=|-=+|++.. .---+.+.|+.- . |+- .+--..||-=+..
T Consensus 138 ~s~~Eler~~r~~~~~l~~~iG~~~DipapDvgt~~~~M~~~~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~~ 217 (445)
T PRK09414 138 KSDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLVY 217 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcCccccCCCHHHHHHHHHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHHHH
Confidence 45567888999999999999999776666776632 112355677521 1 211 1233457777788
Q ss_pred HHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEE-cCCCccccCCcCCCChh-----h
Q 012553 317 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV-DSKGLIVSSRKDSLQHF-----K 390 (461)
Q Consensus 317 gll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lv-Ds~GLi~~~R~~~L~~~-----k 390 (461)
++..+++..|.+|++.||+|.|-|..|...|++|.. .|. +|+-+ |++|-|+... .|+.. |
T Consensus 218 ~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~-----~Ga-------kVVavsDs~G~iyn~~--GLD~~~L~~~k 283 (445)
T PRK09414 218 FAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQ-----LGA-------KVVTCSDSSGYVYDEE--GIDLEKLKEIK 283 (445)
T ss_pred HHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEEcCCceEECCC--CCCHHHHHHHH
Confidence 888899999999999999999999999999999864 253 56655 9999999875 35433 1
Q ss_pred h-------hhccc-cCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcCC
Q 012553 391 K-------PWAHE-HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLWL 447 (461)
Q Consensus 391 ~-------~fA~~-~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Lsn 447 (461)
+ .|... ....-+- +.+-.++.||||=++. .+.+|++-...+-+ +.-.||.=-||
T Consensus 284 ~~~~~~l~~~~~~~~~~~i~~-~~i~~~d~DVliPaAl-~n~It~~~a~~i~~-~~akiIvEgAN 345 (445)
T PRK09414 284 EVRRGRISEYAEEFGAEYLEG-GSPWSVPCDIALPCAT-QNELDEEDAKTLIA-NGVKAVAEGAN 345 (445)
T ss_pred HhcCCchhhhhhhcCCeecCC-ccccccCCcEEEecCC-cCcCCHHHHHHHHH-cCCeEEEcCCC
Confidence 1 11110 0000112 2234567899997766 56999999998843 24567776666
No 28
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.66 E-value=0.017 Score=56.18 Aligned_cols=122 Identities=20% Similarity=0.165 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChh
Q 012553 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (461)
Q Consensus 310 TaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~ 389 (461)
||-=+..++-.+++..+.+|+..||+|.|-|..|.++|++|.+. | .+-+.+.|++|-++.. . ++..
T Consensus 2 Tg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~-----G------~~vV~vsD~~g~i~~~-G--ld~~ 67 (217)
T cd05211 2 TGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEE-----G------GKVLAVSDPDGYIYDP-G--ITTE 67 (217)
T ss_pred chhHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHc-----C------CEEEEEEcCCCcEECC-C--CCHH
Confidence 45556677788889999999999999999999999999999763 4 3578899999988876 3 4432
Q ss_pred h-hhhccccCCCCC-------HHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcCC-CCc
Q 012553 390 K-KPWAHEHEPVNN-------LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLWL-IRK 450 (461)
Q Consensus 390 k-~~fA~~~~~~~~-------L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Lsn-p~~ 450 (461)
+ ..++++...... =.+.+-.++.||||=++. .+.+|++..+.+. -++|..-+| |.+
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DVlipaA~-~~~i~~~~a~~l~----a~~V~e~AN~p~t 132 (217)
T cd05211 68 ELINYAVALGGSARVKVQDYFPGEAILGLDVDIFAPCAL-GNVIDLENAKKLK----AKVVAEGANNPTT 132 (217)
T ss_pred HHHHHHHhhCCccccCcccccCcccceeccccEEeeccc-cCccChhhHhhcC----ccEEEeCCCCCCC
Confidence 2 222221111100 013444568999998777 4599999999885 678887777 443
No 29
>PLN02477 glutamate dehydrogenase
Probab=96.62 E-value=0.083 Score=56.31 Aligned_cols=176 Identities=19% Similarity=0.166 Sum_probs=117.9
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCcccH--HHHHHHHcC----CCcee----------ccCCCchhHHHHH
Q 012553 253 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNA--FELLAKYGT----THLVF----------NDDIQGTASVVLA 316 (461)
Q Consensus 253 ~~g~~Y~~~idefv~av~~~fGp~~lIq~EDf~~~~a--f~iL~ryr~----~~~~F----------nDDiQGTaaV~LA 316 (461)
.+..|-..+...|++++.+.-||..=|-=+|++..-. --+.++|+. .-.|+ .+--.-||-=+..
T Consensus 112 ~s~~e~e~l~r~f~~~l~~~iG~~~DipapDvgt~~~~M~w~~d~y~~~~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~~ 191 (410)
T PLN02477 112 LSESELERLTRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKFHGFSPAVVTGKPIDLGGSLGREAATGRGVVF 191 (410)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCHHHHHHHHHHHHHhhCCCCceEeCCCcccCCCCCCCccchHHHHH
Confidence 4556778889999999999888854444556654211 124566653 11111 2233458887888
Q ss_pred HHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEE-EEcCCCccccCCcCCCChhhh-hhc
Q 012553 317 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQHFKK-PWA 394 (461)
Q Consensus 317 gll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~-lvDs~GLi~~~R~~~L~~~k~-~fA 394 (461)
++-.+++..|.+|++.||+|.|.|..|.+.|++|.+. |. +|+ +.|++|-|+... .|+.... .+.
T Consensus 192 ~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e~-----Ga-------kVVaVsD~~G~iy~~~--GLD~~~L~~~k 257 (410)
T PLN02477 192 ATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHEK-----GG-------KIVAVSDITGAVKNEN--GLDIPALRKHV 257 (410)
T ss_pred HHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHc-----CC-------EEEEEECCCCeEECCC--CCCHHHHHHHH
Confidence 8889999999999999999999999999999988653 53 566 899999999875 3543221 111
Q ss_pred ccc------CC--CCCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcCCC
Q 012553 395 HEH------EP--VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLWLI 448 (461)
Q Consensus 395 ~~~------~~--~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Lsnp 448 (461)
+.. +. .-+-.+.+. .+.||||=++- ++.+|++.+..+ .-+||.--+|-
T Consensus 258 ~~~g~l~~~~~a~~i~~~e~l~-~~~DvliP~Al-~~~I~~~na~~i----~ak~I~egAN~ 313 (410)
T PLN02477 258 AEGGGLKGFPGGDPIDPDDILV-EPCDVLIPAAL-GGVINKENAADV----KAKFIVEAANH 313 (410)
T ss_pred HhcCchhccccceEecCcccee-ccccEEeeccc-cccCCHhHHHHc----CCcEEEeCCCC
Confidence 110 00 012233333 37899996664 568999988876 36788777763
No 30
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=96.55 E-value=0.15 Score=55.11 Aligned_cols=180 Identities=14% Similarity=0.114 Sum_probs=122.2
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCcccHH---HHHHHHc---CCC-ceecc----------CCCchhHHHH
Q 012553 253 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF---ELLAKYG---TTH-LVFND----------DIQGTASVVL 315 (461)
Q Consensus 253 ~~g~~Y~~~idefv~av~~~fGp~~lIq~EDf~~~~af---~iL~ryr---~~~-~~FnD----------DiQGTaaV~L 315 (461)
.+..|-..|...||..+.+..||..-|-=.|++. +.. -+.+.|+ ... .|+-. --..||-=+.
T Consensus 143 ~s~~El~r~~r~f~~eL~~~IGp~~DvpA~DvGt-~~rem~~~~~~y~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~ 221 (454)
T PTZ00079 143 KSDNEVMRFCQSFMTELYRHIGPDTDVPAGDIGV-GGREIGYLFGQYKKLRNNFEGTLTGKNVKWGGSNIRPEATGYGLV 221 (454)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCccchhhcCC-CHHHHHHHHHHHHHHhCCCCceeCCCCCCCCCCCCCCcccHHHHH
Confidence 3456677899999999999999988888888874 222 2445554 221 22211 1223888788
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEE-EEcCCCccccCCcCCCChhhh---
Q 012553 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQHFKK--- 391 (461)
Q Consensus 316 Agll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~-lvDs~GLi~~~R~~~L~~~k~--- 391 (461)
.++-.+++..|.+|++.|++|-|.|..|...|+.|.+. |. +++ +.|++|-|+... .|+..+.
T Consensus 222 ~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~-----Ga-------kVVavSD~~G~iy~~~--Gld~~~l~~l 287 (454)
T PTZ00079 222 YFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQL-----GA-------KVLTMSDSDGYIHEPN--GFTKEKLAYL 287 (454)
T ss_pred HHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEEcCCCcEECCC--CCCHHHHHHH
Confidence 88899999999999999999999999999999998653 53 566 999999999875 4654432
Q ss_pred ------------hhccccCCCC--CHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcCC-CCc
Q 012553 392 ------------PWAHEHEPVN--NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLWL-IRK 450 (461)
Q Consensus 392 ------------~fA~~~~~~~--~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Lsn-p~~ 450 (461)
.|+...+... +- +.+-.++.|||+=+..+ +.+|++-++.+-++ .-.+|.=-|| |++
T Consensus 288 ~~~k~~~~g~i~~~~~~~~~a~~~~~-~~~~~~~cDI~iPcA~~-n~I~~~~a~~l~~~-~ak~V~EgAN~p~t 358 (454)
T PTZ00079 288 MDLKNVKRGRLKEYAKHSSTAKYVPG-KKPWEVPCDIAFPCATQ-NEINLEDAKLLIKN-GCKLVAEGANMPTT 358 (454)
T ss_pred HHHHhhcCCcHHhhhhccCCcEEeCC-cCcccCCccEEEecccc-ccCCHHHHHHHHHc-CCeEEEecCCCCCC
Confidence 1211000000 11 11223679999987774 59999999988543 3446665555 443
No 31
>PRK14031 glutamate dehydrogenase; Provisional
Probab=96.46 E-value=0.11 Score=55.86 Aligned_cols=179 Identities=16% Similarity=0.080 Sum_probs=118.9
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCcc--cHHHHHHHHcC---C-Ccee----------ccCCCchhHHHHH
Q 012553 253 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANH--NAFELLAKYGT---T-HLVF----------NDDIQGTASVVLA 316 (461)
Q Consensus 253 ~~g~~Y~~~idefv~av~~~fGp~~lIq~EDf~~~--~af~iL~ryr~---~-~~~F----------nDDiQGTaaV~LA 316 (461)
.+-.|...|.-.||..+.+.+||+.-|-=+|++.. .---+.+.|+. . .-+| .+--..||-=+..
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~ 213 (444)
T PRK14031 134 KSNAEVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFMFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIY 213 (444)
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHHHHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHH
Confidence 45567788899999999999999888888888652 22335667742 1 1233 2333558888888
Q ss_pred HHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccc
Q 012553 317 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE 396 (461)
Q Consensus 317 gll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~ 396 (461)
++-.+++..|.+|+++||+|-|.|..|...|+.|.+. |. +=+-+.|++|-|+... .++..+..|-..
T Consensus 214 ~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~-----GA------kVVaVSD~~G~iy~~~--Gld~~~l~~~~~ 280 (444)
T PRK14031 214 FLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLEL-----GG------KVVTMSDSDGYIYDPD--GIDREKLDYIME 280 (444)
T ss_pred HHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCC--CCCHHHHHHHHH
Confidence 8889999999999999999999999999999998763 53 3345699999888753 465544322110
Q ss_pred -----cC---------C--CCCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcCC
Q 012553 397 -----HE---------P--VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLWL 447 (461)
Q Consensus 397 -----~~---------~--~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Lsn 447 (461)
.. . .-+-.+ +-.++.||||=+.. .+.+|++.++.+.... .-+|.--+|
T Consensus 281 ~k~~~~~~v~~~~~~~ga~~i~~d~-~~~~~cDIliPaAl-~n~I~~~na~~l~a~g-~~~V~EgAN 344 (444)
T PRK14031 281 LKNLYRGRIREYAEKYGCKYVEGAR-PWGEKGDIALPSAT-QNELNGDDARQLVANG-VIAVSEGAN 344 (444)
T ss_pred HHhhcCCchhhhHhhcCCEEcCCcc-cccCCCcEEeeccc-ccccCHHHHHHHHhcC-CeEEECCCC
Confidence 00 0 001112 11246888886665 4588888888875411 124544444
No 32
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.38 E-value=0.011 Score=60.01 Aligned_cols=97 Identities=14% Similarity=0.228 Sum_probs=78.8
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCC
Q 012553 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (461)
Q Consensus 309 GTaaV~LAgll~Alk~~g~~l~d~riv~~GAGs-AgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~ 387 (461)
+=.-+|-+|++..++-.+.+|++.+++|+|+|. .|..+|.+|... | ..+++++++.
T Consensus 136 ~~~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~-----g-------atVtv~~s~t----------- 192 (286)
T PRK14175 136 TFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQK-----N-------ASVTILHSRS----------- 192 (286)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHC-----C-------CeEEEEeCCc-----------
Confidence 345678889999999999999999999999988 999999998642 4 3678887641
Q ss_pred hhhhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcCCCC
Q 012553 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLWLIR 449 (461)
Q Consensus 388 ~~k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Lsnp~ 449 (461)
.+|.+.++. +|++|...+.++.|++++++ +.-+|+=.+.+.
T Consensus 193 -------------~~l~~~~~~--ADIVIsAvg~p~~i~~~~vk------~gavVIDvGi~~ 233 (286)
T PRK14175 193 -------------KDMASYLKD--ADVIVSAVGKPGLVTKDVVK------EGAVIIDVGNTP 233 (286)
T ss_pred -------------hhHHHHHhh--CCEEEECCCCCcccCHHHcC------CCcEEEEcCCCc
Confidence 258888887 99999999999999999874 346787777665
No 33
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.28 E-value=0.015 Score=58.82 Aligned_cols=85 Identities=24% Similarity=0.350 Sum_probs=69.2
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCC
Q 012553 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (461)
Q Consensus 309 GTaaV~LAgll~Alk~~g~~l~d~riv~~GAGs-AgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~ 387 (461)
..+-.|-.|++..++-.+.+++.+++|++|+|- +|.++|.+|... | | .+.+|+++
T Consensus 137 ~~~p~T~~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~-----g-----a--tVtv~~~~------------ 192 (283)
T PRK14192 137 AYGSATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLNA-----N-----A--TVTICHSR------------ 192 (283)
T ss_pred cccCCcHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhC-----C-----C--EEEEEeCC------------
Confidence 346667799999999999999999999999997 999999988642 4 3 68888762
Q ss_pred hhhhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHH
Q 012553 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (461)
Q Consensus 388 ~~k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~ 431 (461)
..+|.+.++. +|++|-+.+.++.|+.++++
T Consensus 193 ------------t~~L~~~~~~--aDIvI~AtG~~~~v~~~~lk 222 (283)
T PRK14192 193 ------------TQNLPELVKQ--ADIIVGAVGKPELIKKDWIK 222 (283)
T ss_pred ------------chhHHHHhcc--CCEEEEccCCCCcCCHHHcC
Confidence 1246677775 99999999988899998864
No 34
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.18 E-value=0.029 Score=56.67 Aligned_cols=106 Identities=18% Similarity=0.170 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhh
Q 012553 313 VVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP 392 (461)
Q Consensus 313 V~LAgll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~ 392 (461)
++-+++..|++..+.++...|++|+|+|.+|..++..+... | -+++++|++- . +..
T Consensus 134 ~aegav~~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~~-----G-------a~V~v~~r~~---~---------~~~ 189 (296)
T PRK08306 134 TAEGAIMMAIEHTPITIHGSNVLVLGFGRTGMTLARTLKAL-----G-------ANVTVGARKS---A---------HLA 189 (296)
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEEECCcHHHHHHHHHHHHC-----C-------CEEEEEECCH---H---------HHH
Confidence 33345666777788899999999999999999999888642 5 2789888851 1 111
Q ss_pred hccc----cCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEc-CCC
Q 012553 393 WAHE----HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALL-WLI 448 (461)
Q Consensus 393 fA~~----~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~L-snp 448 (461)
+++. .-...++.+.++. .|++|-++. ...+++++++.|.+ ..+|+=+ +||
T Consensus 190 ~~~~~G~~~~~~~~l~~~l~~--aDiVI~t~p-~~~i~~~~l~~~~~---g~vIIDla~~p 244 (296)
T PRK08306 190 RITEMGLSPFHLSELAEEVGK--IDIIFNTIP-ALVLTKEVLSKMPP---EALIIDLASKP 244 (296)
T ss_pred HHHHcCCeeecHHHHHHHhCC--CCEEEECCC-hhhhhHHHHHcCCC---CcEEEEEccCC
Confidence 1111 0112467788876 899998654 45789999998875 4555533 344
No 35
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.15 E-value=0.028 Score=52.44 Aligned_cols=115 Identities=23% Similarity=0.253 Sum_probs=71.5
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCCh
Q 012553 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (461)
Q Consensus 310 TaaV~LAgll~Alk~~g~~l~d~riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~ 388 (461)
||+.+++.+..+++..|..+++.+++++|+ |..|..++..+... | .++++++++. .+ +..
T Consensus 7 ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~-----g-------~~V~l~~R~~----~~---~~~ 67 (194)
T cd01078 7 TAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLARE-----G-------ARVVLVGRDL----ER---AQK 67 (194)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHHC-----C-------CEEEEEcCCH----HH---HHH
Confidence 677778888888888889999999999997 99999998887642 3 3788887641 11 211
Q ss_pred hhhhhcc---------ccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCC--cEEEEcCCCCc
Q 012553 389 FKKPWAH---------EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEV--VFQALLWLIRK 450 (461)
Q Consensus 389 ~k~~fA~---------~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~er--PIIF~Lsnp~~ 450 (461)
....+.. +.....++.+++++ .|++|-.+..+ ..+.... +...+ .+++=+..|..
T Consensus 68 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~diVi~at~~g-~~~~~~~----~~~~~~~~vv~D~~~~~~ 133 (194)
T cd01078 68 AADSLRARFGEGVGAVETSDDAARAAAIKG--ADVVFAAGAAG-VELLEKL----AWAPKPLAVAADVNAVPP 133 (194)
T ss_pred HHHHHHhhcCCcEEEeeCCCHHHHHHHHhc--CCEEEECCCCC-ceechhh----hcccCceeEEEEccCCCC
Confidence 1111110 01112345677876 89999877655 4432222 11223 36776666654
No 36
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.14 E-value=0.042 Score=53.80 Aligned_cols=122 Identities=21% Similarity=0.181 Sum_probs=86.5
Q ss_pred CchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCC
Q 012553 308 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (461)
Q Consensus 308 QGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~ 387 (461)
.-||-=+..++-.+++..+.++++.||+|.|.|..|.++|++|.+. |. +=+.+.|++|-++... .|+
T Consensus 8 ~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~-----g~------~vv~v~D~~g~~~~~~--Gld 74 (227)
T cd01076 8 EATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEA-----GA------KVVAVSDSDGTIYNPD--GLD 74 (227)
T ss_pred ccchHHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCC--CCC
Confidence 4577777888888889889999999999999999999999988653 53 3355999999998865 354
Q ss_pred hhhh-hhccccCC------C--CCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcCCC
Q 012553 388 HFKK-PWAHEHEP------V--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLWLI 448 (461)
Q Consensus 388 ~~k~-~fA~~~~~------~--~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Lsnp 448 (461)
.... .+.+.... . -+-.+ +-..+.||||=++. ++.+|++.+..+. -++|.--+|-
T Consensus 75 ~~~l~~~~~~~g~l~~~~~~~~~~~~~-i~~~~~Dvlip~a~-~~~i~~~~~~~l~----a~~I~egAN~ 138 (227)
T cd01076 75 VPALLAYKKEHGSVLGFPGAERITNEE-LLELDCDILIPAAL-ENQITADNADRIK----AKIIVEAANG 138 (227)
T ss_pred HHHHHHHHHhcCCcccCCCceecCCcc-ceeecccEEEecCc-cCccCHHHHhhce----eeEEEeCCCC
Confidence 3221 11111000 0 12223 33458899998774 6699999999885 6888877773
No 37
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=96.12 E-value=0.026 Score=58.71 Aligned_cols=126 Identities=11% Similarity=0.099 Sum_probs=75.6
Q ss_pred ccHHHHHHHHcCCCceeccCCCchhHHHHHH--HHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhh
Q 012553 287 HNAFELLAKYGTTHLVFNDDIQGTASVVLAG--VVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEE 364 (461)
Q Consensus 287 ~~af~iL~ryr~~~~~FnDDiQGTaaV~LAg--ll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~ee 364 (461)
..||..=+|-|.+.-+ |+++|.++. +..+ +.. .+|++.+++++|||..|--+|+.|... |.
T Consensus 136 ~~A~~~aKrVRteT~I------~~~~vSv~s~av~~~-~~~-~~l~~k~vLvIGaGem~~l~a~~L~~~-----g~---- 198 (338)
T PRK00676 136 QKALKEGKVFRSKGGA------PYAEVTIESVVQQEL-RRR-QKSKKASLLFIGYSEINRKVAYYLQRQ-----GY---- 198 (338)
T ss_pred HHHHHHHHHHhhhcCC------CCCCcCHHHHHHHHH-HHh-CCccCCEEEEEcccHHHHHHHHHHHHc-----CC----
Confidence 4455555566542211 444444443 3333 333 569999999999999988888877652 53
Q ss_pred ccceEEEEcCCCccccCCcCCCChhhhhhccccCCCCCHHHhhc-ccCCcEEEec----cCCCCCCCHHHHHHHhcCCCC
Q 012553 365 TRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVK-VIKPTILIGS----SGVGRTFTKEVIEAMASFNEV 439 (461)
Q Consensus 365 A~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~-~vkptvLIG~----S~~~g~Ft~evv~~Ma~~~er 439 (461)
++|+++.+.-. + .+|.... .+++. ..++||+|-. +++...+|.+.++..- .|
T Consensus 199 --~~i~v~nRt~~----~--------~~~~~~~------~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~~~~~---~r 255 (338)
T PRK00676 199 --SRITFCSRQQL----T--------LPYRTVV------REELSFQDPYDVIFFGSSESAYAFPHLSWESLADIP---DR 255 (338)
T ss_pred --CEEEEEcCCcc----c--------cchhhhh------hhhhhcccCCCEEEEcCCcCCCCCceeeHHHHhhcc---Cc
Confidence 58998888641 1 2222100 01111 1258999964 3444577888766422 24
Q ss_pred cEEEEcCCCCchhh
Q 012553 440 VFQALLWLIRKFNF 453 (461)
Q Consensus 440 PIIF~Lsnp~~~~~ 453 (461)
++|=||+|++.-.
T Consensus 256 -~~iDLAvPRdId~ 268 (338)
T PRK00676 256 -IVFDFNVPRTFPW 268 (338)
T ss_pred -EEEEecCCCCCcc
Confidence 9999999999854
No 38
>PRK14030 glutamate dehydrogenase; Provisional
Probab=96.08 E-value=0.32 Score=52.55 Aligned_cols=178 Identities=15% Similarity=0.082 Sum_probs=119.9
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCcccHH---HHHHHHcC----CCceecc---CC-------CchhHHHH
Q 012553 253 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF---ELLAKYGT----THLVFND---DI-------QGTASVVL 315 (461)
Q Consensus 253 ~~g~~Y~~~idefv~av~~~fGp~~lIq~EDf~~~~af---~iL~ryr~----~~~~FnD---Di-------QGTaaV~L 315 (461)
.+..|-..|.-.||..+.+-.||+.=|==+|++. ++. -+.+.|+. ...++.- +. ..||-=+.
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~DIpApDvgt-~~~~M~w~~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~ 212 (445)
T PRK14030 134 KSDAEIMRFCQAFMLELWRHIGPDTDVPAGDIGV-GGREVGYMFGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGAL 212 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCccccccCC-CHHHHHHHHHHHHhccCccccEEEccccccCCCCCCCCccHHHHH
Confidence 4455788889999999998889977666666663 222 24566653 2223211 22 23888888
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhh---
Q 012553 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP--- 392 (461)
Q Consensus 316 Agll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~--- 392 (461)
.++-.+++..|.+|++.||+|-|.|..|...|+.|.+. |. +=+-+.|++|-|+... .|+..+..
T Consensus 213 ~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~-----Ga------kvVavSD~~G~i~d~~--Gld~~~l~~l~ 279 (445)
T PRK14030 213 YFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATEL-----GA------KVVTISGPDGYIYDPD--GISGEKIDYML 279 (445)
T ss_pred HHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEEcCCceEECCC--CCCHHHHHHHH
Confidence 88889999999999999999999999999999998653 63 4577789999998864 46544311
Q ss_pred ------------hccccCCC--CCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcCC
Q 012553 393 ------------WAHEHEPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLWL 447 (461)
Q Consensus 393 ------------fA~~~~~~--~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Lsn 447 (461)
++...+.. -+-.+ +-.++.||||=+.. .+.+|++.++.+.++ .-.||.=-||
T Consensus 280 ~~k~~~~~~~~~~~~~~~ga~~i~~~~-~~~~~cDVliPcAl-~n~I~~~na~~l~~~-~ak~V~EgAN 345 (445)
T PRK14030 280 ELRASGNDIVAPYAEKFPGSTFFAGKK-PWEQKVDIALPCAT-QNELNGEDADKLIKN-GVLCVAEVSN 345 (445)
T ss_pred HHHHhcCccHHHHHhcCCCCEEcCCcc-ceeccccEEeeccc-cccCCHHHHHHHHHc-CCeEEEeCCC
Confidence 11010010 01122 23457899997766 459999999998432 3556666665
No 39
>PLN02494 adenosylhomocysteinase
Probab=96.06 E-value=0.048 Score=59.17 Aligned_cols=119 Identities=17% Similarity=0.254 Sum_probs=81.7
Q ss_pred CCceec----------cCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccce
Q 012553 299 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (461)
Q Consensus 299 ~~~~Fn----------DDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~ 368 (461)
.+|++| |...||+--++-|++ |.++..+...+++|+|.|..|.++|..+.. .|. +
T Consensus 215 ~~Pvi~vnds~~K~~fDn~yGtgqS~~d~i~---r~t~i~LaGKtVvViGyG~IGr~vA~~aka-----~Ga-------~ 279 (477)
T PLN02494 215 LFPAINVNDSVTKSKFDNLYGCRHSLPDGLM---RATDVMIAGKVAVICGYGDVGKGCAAAMKA-----AGA-------R 279 (477)
T ss_pred CCCEEEEcChhhhhhhhccccccccHHHHHH---HhcCCccCCCEEEEECCCHHHHHHHHHHHH-----CCC-------E
Confidence 678776 556899988888887 557778999999999999999999998853 253 5
Q ss_pred EEEEcCCCccccCCcCCCChhhhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcCCC
Q 012553 369 ICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLWLI 448 (461)
Q Consensus 369 i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Lsnp 448 (461)
++++|.+.. |. +.....-| ...++.|+++. +|++|=+++..++++++.++.|.. .-++.-.+.+
T Consensus 280 VIV~e~dp~----r~--~eA~~~G~-----~vv~leEal~~--ADVVI~tTGt~~vI~~e~L~~MK~---GAiLiNvGr~ 343 (477)
T PLN02494 280 VIVTEIDPI----CA--LQALMEGY-----QVLTLEDVVSE--ADIFVTTTGNKDIIMVDHMRKMKN---NAIVCNIGHF 343 (477)
T ss_pred EEEEeCCch----hh--HHHHhcCC-----eeccHHHHHhh--CCEEEECCCCccchHHHHHhcCCC---CCEEEEcCCC
Confidence 888876421 10 11001011 11257788775 788887777666778888888865 5566655554
No 40
>PLN00106 malate dehydrogenase
Probab=95.97 E-value=0.037 Score=56.98 Aligned_cols=119 Identities=22% Similarity=0.254 Sum_probs=81.8
Q ss_pred HHHHHHHHHhCCCcccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhc
Q 012553 316 AGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 394 (461)
Q Consensus 316 Agll~Alk~~g~~l~d~riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA 394 (461)
|.-+.|+|..|..-. .||+|+|| |..|..+|..|.. .|+ ...+.|+|.+- ..+-.-.|.+... +.
T Consensus 4 ~~~~~~~~~~~~~~~-~KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~el~L~Di~~--~~g~a~Dl~~~~~-~~ 69 (323)
T PLN00106 4 ASSLRACRAKGGAPG-FKVAVLGAAGGIGQPLSLLMKM-----NPL-----VSELHLYDIAN--TPGVAADVSHINT-PA 69 (323)
T ss_pred hhhhhccccccCCCC-CEEEEECCCCHHHHHHHHHHHh-----CCC-----CCEEEEEecCC--CCeeEchhhhCCc-Cc
Confidence 345678888887655 59999999 9999999998764 244 35899999865 1111101322211 11
Q ss_pred ccc--CCCCCHHHhhcccCCcEEEeccCCCCC--------------CCHHHHHHHhcCCCCcEEEEcCCCCc
Q 012553 395 HEH--EPVNNLLDAVKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEVVFQALLWLIRK 450 (461)
Q Consensus 395 ~~~--~~~~~L~eaV~~vkptvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIF~Lsnp~~ 450 (461)
+-. ....++.+++++ .|++|=+.+.+.. ..+++++.+.+++.+.||+.-|||-.
T Consensus 70 ~i~~~~~~~d~~~~l~~--aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD 139 (323)
T PLN00106 70 QVRGFLGDDQLGDALKG--ADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVN 139 (323)
T ss_pred eEEEEeCCCCHHHHcCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 111 123567899998 8999866665421 45678889999999999999999997
No 41
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.96 E-value=0.029 Score=56.59 Aligned_cols=113 Identities=17% Similarity=0.190 Sum_probs=74.3
Q ss_pred CchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCC
Q 012553 308 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (461)
Q Consensus 308 QGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~ 387 (461)
..+.+++=.++.-+++..+..|.+.+++|+|+|.+|.++|+.+... |. +++++|++. . .+.
T Consensus 128 ~n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~-----G~-------~V~v~~R~~----~---~~~ 188 (287)
T TIGR02853 128 YNSIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSAL-----GA-------RVFVGARSS----A---DLA 188 (287)
T ss_pred EccHhHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHC-----CC-------EEEEEeCCH----H---HHH
Confidence 4455666667777788888899999999999999999999998642 52 688888742 1 111
Q ss_pred hhhhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcC
Q 012553 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLW 446 (461)
Q Consensus 388 ~~k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Ls 446 (461)
..+ .+....-...+|.+.++. .|++|=+. +.+.++++.++.|.+ ..+|+=++
T Consensus 189 ~~~-~~g~~~~~~~~l~~~l~~--aDiVint~-P~~ii~~~~l~~~k~---~aliIDla 240 (287)
T TIGR02853 189 RIT-EMGLIPFPLNKLEEKVAE--IDIVINTI-PALVLTADVLSKLPK---HAVIIDLA 240 (287)
T ss_pred HHH-HCCCeeecHHHHHHHhcc--CCEEEECC-ChHHhCHHHHhcCCC---CeEEEEeC
Confidence 111 000011112357777776 89998654 344788888888854 45666444
No 42
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=95.93 E-value=0.11 Score=56.54 Aligned_cols=113 Identities=19% Similarity=0.188 Sum_probs=78.4
Q ss_pred CCCceeccCCCchhHHH-------HHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEE
Q 012553 298 TTHLVFNDDIQGTASVV-------LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC 370 (461)
Q Consensus 298 ~~~~~FnDDiQGTaaV~-------LAgll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~ 370 (461)
..+||+|=+---|-++. ++.+-+.+|.++..|.+.+++|+|.|..|.++|+.+... |. +++
T Consensus 214 L~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~-----Ga-------~Vi 281 (476)
T PTZ00075 214 LLFPAINVNDSVTKSKFDNIYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGF-----GA-------RVV 281 (476)
T ss_pred CCceEEEeCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEE
Confidence 36999986654444433 344455567778999999999999999999999988642 53 577
Q ss_pred EEcCCCccccCCcCCCChhhhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhc
Q 012553 371 LVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMAS 435 (461)
Q Consensus 371 lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~ 435 (461)
++|++-. +. +.... ..-...++.++++. .|++|-+.+..++|+++.++.|..
T Consensus 282 V~e~dp~----~a--~~A~~-----~G~~~~~leell~~--ADIVI~atGt~~iI~~e~~~~MKp 333 (476)
T PTZ00075 282 VTEIDPI----CA--LQAAM-----EGYQVVTLEDVVET--ADIFVTATGNKDIITLEHMRRMKN 333 (476)
T ss_pred EEeCCch----hH--HHHHh-----cCceeccHHHHHhc--CCEEEECCCcccccCHHHHhccCC
Confidence 7766421 10 11000 11112468888886 899998888778999999999975
No 43
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=95.92 E-value=0.024 Score=56.96 Aligned_cols=91 Identities=18% Similarity=0.279 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCCh-hhhhh
Q 012553 315 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH-FKKPW 393 (461)
Q Consensus 315 LAgll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~-~k~~f 393 (461)
..|++.+++..+..++.++++|+|||.||.+++..+... |+ ++|+++|+. ..|.+.+.+ .+..+
T Consensus 111 ~~G~~~~l~~~~~~~~~k~vlIlGaGGaaraia~aL~~~-----G~------~~I~I~nR~----~~ka~~la~~l~~~~ 175 (284)
T PRK12549 111 WSGFAESFRRGLPDASLERVVQLGAGGAGAAVAHALLTL-----GV------ERLTIFDVD----PARAAALADELNARF 175 (284)
T ss_pred HHHHHHHHHhhccCccCCEEEEECCcHHHHHHHHHHHHc-----CC------CEEEEECCC----HHHHHHHHHHHHhhC
Confidence 356777887666678889999999999999999888753 64 579999984 222222211 11111
Q ss_pred cc-ccCCCCCHHHhhcccCCcEEEeccCCC
Q 012553 394 AH-EHEPVNNLLDAVKVIKPTILIGSSGVG 422 (461)
Q Consensus 394 A~-~~~~~~~L~eaV~~vkptvLIG~S~~~ 422 (461)
.. ......++.+.++. +|++|.++..|
T Consensus 176 ~~~~~~~~~~~~~~~~~--aDiVInaTp~G 203 (284)
T PRK12549 176 PAARATAGSDLAAALAA--ADGLVHATPTG 203 (284)
T ss_pred CCeEEEeccchHhhhCC--CCEEEECCcCC
Confidence 11 00112345666665 89999987654
No 44
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.91 E-value=0.028 Score=58.59 Aligned_cols=94 Identities=17% Similarity=0.256 Sum_probs=62.7
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccc----cCCCCCHH
Q 012553 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLL 404 (461)
Q Consensus 329 l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~----~~~~~~L~ 404 (461)
+...+++|+|+|.+|.++|+.+... | + ++.++|++ ..| +......|... ......|.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~l-----G-----a--~V~v~d~~----~~~---~~~l~~~~g~~v~~~~~~~~~l~ 225 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGL-----G-----A--TVTILDIN----IDR---LRQLDAEFGGRIHTRYSNAYEIE 225 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHC-----C-----C--eEEEEECC----HHH---HHHHHHhcCceeEeccCCHHHHH
Confidence 5678899999999999999988642 5 2 58889874 111 11111222211 11123588
Q ss_pred HhhcccCCcEEEeccCC-----CCCCCHHHHHHHhcCCCCcEEEEcC
Q 012553 405 DAVKVIKPTILIGSSGV-----GRTFTKEVIEAMASFNEVVFQALLW 446 (461)
Q Consensus 405 eaV~~vkptvLIG~S~~-----~g~Ft~evv~~Ma~~~erPIIF~Ls 446 (461)
++++. .|++|.+... +.++|+++++.|.. ..+|+-+|
T Consensus 226 ~~l~~--aDvVI~a~~~~g~~~p~lit~~~l~~mk~---g~vIvDva 267 (370)
T TIGR00518 226 DAVKR--ADLLIGAVLIPGAKAPKLVSNSLVAQMKP---GAVIVDVA 267 (370)
T ss_pred HHHcc--CCEEEEccccCCCCCCcCcCHHHHhcCCC---CCEEEEEe
Confidence 88876 9999987532 44689999999965 57777766
No 45
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=95.81 E-value=0.061 Score=51.36 Aligned_cols=112 Identities=18% Similarity=0.170 Sum_probs=76.2
Q ss_pred chhHHHHHHHHHHHHHh--CCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCC
Q 012553 309 GTASVVLAGVVAALKLI--GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 386 (461)
Q Consensus 309 GTaaV~LAgll~Alk~~--g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L 386 (461)
.||-=+..++-.+++.. +.++++.+|+|.|.|..|..+|+.|.+. |. +++++|++. +.+
T Consensus 4 aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~-----G~-------~Vvv~D~~~-------~~~ 64 (200)
T cd01075 4 PTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEE-----GA-------KLIVADINE-------EAV 64 (200)
T ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEcCCH-------HHH
Confidence 35555666777777775 8899999999999999999999988653 53 688888651 123
Q ss_pred ChhhhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcCCC
Q 012553 387 QHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLWLI 448 (461)
Q Consensus 387 ~~~k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Lsnp 448 (461)
..++..|.. . .-+..+... .+.|+++=++. ++.+|++.++.|. -++|..-+|-
T Consensus 65 ~~~~~~~g~--~-~v~~~~l~~-~~~Dv~vp~A~-~~~I~~~~~~~l~----~~~v~~~AN~ 117 (200)
T cd01075 65 ARAAELFGA--T-VVAPEEIYS-VDADVFAPCAL-GGVINDDTIPQLK----AKAIAGAANN 117 (200)
T ss_pred HHHHHHcCC--E-EEcchhhcc-ccCCEEEeccc-ccccCHHHHHHcC----CCEEEECCcC
Confidence 333333311 1 112233333 36899996555 5699999999985 5688877773
No 46
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=95.48 E-value=0.21 Score=50.11 Aligned_cols=122 Identities=20% Similarity=0.089 Sum_probs=84.8
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEE-EEcCCCccccCCcCCCC
Q 012553 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQ 387 (461)
Q Consensus 309 GTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~-lvDs~GLi~~~R~~~L~ 387 (461)
.||-=+..++-.+++..+.++++.||+|-|-|..|.+.|++|.+. |. +++ +.|++|-|+... .|+
T Consensus 16 aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~-----Ga-------kvvaVsD~~G~i~~~~--Gld 81 (254)
T cd05313 16 ATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLEL-----GA-------KVVTLSDSKGYVYDPD--GFT 81 (254)
T ss_pred hhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEECCCceEECCC--CCC
Confidence 366667777888888889999999999999999999999998652 53 566 999999999875 354
Q ss_pred hhhhh---------------hccccC--CCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcCC
Q 012553 388 HFKKP---------------WAHEHE--PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLWL 447 (461)
Q Consensus 388 ~~k~~---------------fA~~~~--~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Lsn 447 (461)
..+.. |....+ ..-+-.|.. .++.||||=+.. ++.+|++.+..+.+ +.-+||.--+|
T Consensus 82 ~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~~-~~~~DIliPcAl-~~~I~~~na~~i~~-~~ak~I~EgAN 155 (254)
T cd05313 82 GEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKPW-EVPCDIAFPCAT-QNEVDAEDAKLLVK-NGCKYVAEGAN 155 (254)
T ss_pred HHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcchh-cCCCcEEEeccc-cccCCHHHHHHHHH-cCCEEEEeCCC
Confidence 32210 100000 001222222 457899997765 56999999999843 23677777776
No 47
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=95.47 E-value=0.046 Score=48.38 Aligned_cols=87 Identities=24% Similarity=0.316 Sum_probs=58.3
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhcc
Q 012553 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 395 (461)
Q Consensus 316 Agll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~ 395 (461)
.|+.+|++..+.++++.+++|+|+|..|..+++.+... | ..+++++|+. .. ......+.+..
T Consensus 4 ~g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~-----g------~~~v~v~~r~----~~---~~~~~~~~~~~ 65 (155)
T cd01065 4 LGFVRALEEAGIELKGKKVLILGAGGAARAVAYALAEL-----G------AAKIVIVNRT----LE---KAKALAERFGE 65 (155)
T ss_pred HHHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHC-----C------CCEEEEEcCC----HH---HHHHHHHHHhh
Confidence 58899999988889999999999999998888887542 3 2578888874 11 12222222221
Q ss_pred c--cCCCCCHHHhhcccCCcEEEeccCCC
Q 012553 396 E--HEPVNNLLDAVKVIKPTILIGSSGVG 422 (461)
Q Consensus 396 ~--~~~~~~L~eaV~~vkptvLIG~S~~~ 422 (461)
. .....++.++++. +|++|-+...+
T Consensus 66 ~~~~~~~~~~~~~~~~--~Dvvi~~~~~~ 92 (155)
T cd01065 66 LGIAIAYLDLEELLAE--ADLIINTTPVG 92 (155)
T ss_pred cccceeecchhhcccc--CCEEEeCcCCC
Confidence 1 0123467777765 89999877544
No 48
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=95.37 E-value=0.035 Score=55.64 Aligned_cols=96 Identities=19% Similarity=0.185 Sum_probs=60.1
Q ss_pred HHHHHHHHHhCC--CcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhh
Q 012553 316 AGVVAALKLIGG--TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW 393 (461)
Q Consensus 316 Agll~Alk~~g~--~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~f 393 (461)
.|++.+++-.+. ++++.+++++|||.||-+|+..|... |. ++|+++++. ..|.+.|.+ .|
T Consensus 108 ~G~~~~l~~~~~~~~~~~k~vlvlGaGGaarai~~aL~~~-----G~------~~i~I~nRt----~~ka~~La~---~~ 169 (282)
T TIGR01809 108 DGIAGALANIGKFEPLAGFRGLVIGAGGTSRAAVYALASL-----GV------TDITVINRN----PDKLSRLVD---LG 169 (282)
T ss_pred HHHHHHHHhhCCccccCCceEEEEcCcHHHHHHHHHHHHc-----CC------CeEEEEeCC----HHHHHHHHH---Hh
Confidence 456777776663 68899999999999999998877643 53 689999873 222222211 11
Q ss_pred cccc--CCC---CCHHHhhcccCCcEEEeccCCCCCCCHHHHH
Q 012553 394 AHEH--EPV---NNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (461)
Q Consensus 394 A~~~--~~~---~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~ 431 (461)
.... ... ..+.+++. ++|++|.++..+-.++.+.+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~--~~DiVInaTp~g~~~~~~~l~ 210 (282)
T TIGR01809 170 VQVGVITRLEGDSGGLAIEK--AAEVLVSTVPADVPADYVDLF 210 (282)
T ss_pred hhcCcceeccchhhhhhccc--CCCEEEECCCCCCCCCHHHhh
Confidence 1100 011 12334444 489999998877666665543
No 49
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=95.32 E-value=0.13 Score=47.06 Aligned_cols=83 Identities=22% Similarity=0.225 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhh
Q 012553 312 SVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK 390 (461)
Q Consensus 312 aV~LAgll~Alk~~g~~l~d~riv~~GAGs-AgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k 390 (461)
-.+..|++..++..|.+++.++++++|.+. .|.-+|.+|. + .|. .+..+|++.
T Consensus 9 p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~----~-~ga-------tV~~~~~~t-------------- 62 (140)
T cd05212 9 SPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQ----R-DGA-------TVYSCDWKT-------------- 62 (140)
T ss_pred ccHHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHH----H-CCC-------EEEEeCCCC--------------
Confidence 357788999999999999999999999864 4444555543 2 243 577777641
Q ss_pred hhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHH
Q 012553 391 KPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEA 432 (461)
Q Consensus 391 ~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~ 432 (461)
++|.++++. +|++|-..+.++.|+.|+|+.
T Consensus 63 ----------~~l~~~v~~--ADIVvsAtg~~~~i~~~~ikp 92 (140)
T cd05212 63 ----------IQLQSKVHD--ADVVVVGSPKPEKVPTEWIKP 92 (140)
T ss_pred ----------cCHHHHHhh--CCEEEEecCCCCccCHHHcCC
Confidence 258888998 999999999899999999873
No 50
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.26 E-value=0.014 Score=52.69 Aligned_cols=110 Identities=20% Similarity=0.255 Sum_probs=69.6
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC-CccccCCcCCCChhhhhhccccCCCCCHHHhhcc
Q 012553 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 409 (461)
Q Consensus 332 ~riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~-GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~ 409 (461)
.||.|+|| |..|..+|-+|+.. |+ .++|.|+|.+ ......-.| |.+..-+.-++..-..+..++++.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~-----~l-----~~ei~L~D~~~~~~~g~a~D-l~~~~~~~~~~~~i~~~~~~~~~~ 69 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ-----GL-----ADEIVLIDINEDKAEGEALD-LSHASAPLPSPVRITSGDYEALKD 69 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT-----TT-----SSEEEEEESSHHHHHHHHHH-HHHHHHGSTEEEEEEESSGGGGTT
T ss_pred CEEEEECCCChHHHHHHHHHHhC-----CC-----CCceEEeccCcccceeeehh-hhhhhhhccccccccccccccccc
Confidence 38999999 99999999988763 55 3569999986 211110011 222211111111111356777887
Q ss_pred cCCcEEEeccCCC---CC-----------CCHHHHHHHhcCCCCcEEEEcCCCCchhhh
Q 012553 410 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEVVFQALLWLIRKFNFC 454 (461)
Q Consensus 410 vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIF~Lsnp~~~~~~ 454 (461)
+|++|=+.+.+ |. +-+++.+.+++++...+++-.+||-+++--
T Consensus 70 --aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd~~t~ 126 (141)
T PF00056_consen 70 --ADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVDVMTY 126 (141)
T ss_dssp --ESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHHHHHH
T ss_pred --ccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHHHHHH
Confidence 89999555543 21 335677788889999999999999986643
No 51
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=95.25 E-value=0.13 Score=48.62 Aligned_cols=99 Identities=21% Similarity=0.324 Sum_probs=64.6
Q ss_pred CchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCC
Q 012553 308 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (461)
Q Consensus 308 QGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~ 387 (461)
.||+--++-|++ |.++..|...++|++|-|--|-|||+.+... | -++.++|.+
T Consensus 3 yG~g~S~~d~i~---r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~-----G-------a~V~V~e~D------------ 55 (162)
T PF00670_consen 3 YGTGQSLVDGIM---RATNLMLAGKRVVVIGYGKVGKGIARALRGL-----G-------ARVTVTEID------------ 55 (162)
T ss_dssp HHHHHHHHHHHH---HHH-S--TTSEEEEE--SHHHHHHHHHHHHT-----T--------EEEEE-SS------------
T ss_pred cccchhHHHHHH---hcCceeeCCCEEEEeCCCcccHHHHHHHhhC-----C-------CEEEEEECC------------
Confidence 477777777776 4688999999999999999999999988653 5 267776652
Q ss_pred hhhhhhcc-ccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhc
Q 012553 388 HFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMAS 435 (461)
Q Consensus 388 ~~k~~fA~-~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~ 435 (461)
|.+.-=|. +.-+..++.|+++. +|++|.+++...++|.|.++.|..
T Consensus 56 Pi~alqA~~dGf~v~~~~~a~~~--adi~vtaTG~~~vi~~e~~~~mkd 102 (162)
T PF00670_consen 56 PIRALQAAMDGFEVMTLEEALRD--ADIFVTATGNKDVITGEHFRQMKD 102 (162)
T ss_dssp HHHHHHHHHTT-EEE-HHHHTTT---SEEEE-SSSSSSB-HHHHHHS-T
T ss_pred hHHHHHhhhcCcEecCHHHHHhh--CCEEEECCCCccccCHHHHHHhcC
Confidence 22211111 11223579999997 999999999888999999999975
No 52
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=95.11 E-value=0.028 Score=46.24 Aligned_cols=95 Identities=12% Similarity=0.162 Sum_probs=63.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEE-cCCCccccCCcCCCChhhhhhccccCCCCCHHHhhcccC
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV-DSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lv-Ds~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vk 411 (461)
||.|+|+|..|.++++.+... |. ...+|+++ +++ .+...+.++.|.... -..+..|+++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~-----g~----~~~~v~~~~~r~-------~~~~~~~~~~~~~~~-~~~~~~~~~~~-- 61 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS-----GI----KPHEVIIVSSRS-------PEKAAELAKEYGVQA-TADDNEEAAQE-- 61 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-----TS-----GGEEEEEEESS-------HHHHHHHHHHCTTEE-ESEEHHHHHHH--
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC----CceeEEeeccCc-------HHHHHHHHHhhcccc-ccCChHHhhcc--
Confidence 789999999999999988763 54 34678755 552 122333333332110 01369999996
Q ss_pred CcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcCCC
Q 012553 412 PTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLWLI 448 (461)
Q Consensus 412 ptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Lsnp 448 (461)
+|++| ++..+ ..-+++++++....+..+|.-++||
T Consensus 62 advvi-lav~p-~~~~~v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 62 ADVVI-LAVKP-QQLPEVLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp TSEEE-E-S-G-GGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred CCEEE-EEECH-HHHHHHHHHHhhccCCCEEEEeCCC
Confidence 99988 66655 5667788888666788899888876
No 53
>PRK05086 malate dehydrogenase; Provisional
Probab=94.93 E-value=0.15 Score=52.12 Aligned_cols=107 Identities=19% Similarity=0.195 Sum_probs=68.7
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccc-cCCCCCHHHhhcc
Q 012553 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKV 409 (461)
Q Consensus 332 ~riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~-~~~~~~L~eaV~~ 409 (461)
.||+|+|| |..|..+|.++... .+. ...+.++|++-. ..+..-++.+. .....- .....++.+++++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~----~~~-----~~el~L~d~~~~-~~g~alDl~~~-~~~~~i~~~~~~d~~~~l~~ 69 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQ----LPA-----GSELSLYDIAPV-TPGVAVDLSHI-PTAVKIKGFSGEDPTPALEG 69 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC----CCC-----ccEEEEEecCCC-CcceehhhhcC-CCCceEEEeCCCCHHHHcCC
Confidence 48999999 99999999887542 122 257889997522 11100012111 000000 0012467788887
Q ss_pred cCCcEEEeccCCCCC--------------CCHHHHHHHhcCCCCcEEEEcCCCCch
Q 012553 410 IKPTILIGSSGVGRT--------------FTKEVIEAMASFNEVVFQALLWLIRKF 451 (461)
Q Consensus 410 vkptvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIF~Lsnp~~~ 451 (461)
.|++|=+.+.+.- ..++++++|.+++.+.+|+-.|||...
T Consensus 70 --~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~D~ 123 (312)
T PRK05086 70 --ADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNT 123 (312)
T ss_pred --CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchHH
Confidence 8988866665321 567899999999999999999999953
No 54
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.92 E-value=0.091 Score=53.59 Aligned_cols=83 Identities=16% Similarity=0.167 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChh
Q 012553 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (461)
Q Consensus 311 aaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~ 389 (461)
.-+|-+|++.=++-.+.+++..++||+|.| ..|.-+|.++... |. .+.+|+++
T Consensus 137 ~PcTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~-----gA-------tVtv~hs~-------------- 190 (285)
T PRK14191 137 VPATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNA-----GA-------SVSVCHIL-------------- 190 (285)
T ss_pred CCCcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHC-----CC-------EEEEEeCC--------------
Confidence 356788888889999999999999999999 9999999998642 42 45666442
Q ss_pred hhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHH
Q 012553 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (461)
Q Consensus 390 k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~ 431 (461)
..+|.+.++. +|++|...+.++.+++++|+
T Consensus 191 ----------t~~l~~~~~~--ADIvV~AvG~p~~i~~~~vk 220 (285)
T PRK14191 191 ----------TKDLSFYTQN--ADIVCVGVGKPDLIKASMVK 220 (285)
T ss_pred ----------cHHHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1247788887 99999999999999999995
No 55
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=94.84 E-value=0.051 Score=53.41 Aligned_cols=109 Identities=18% Similarity=0.208 Sum_probs=70.5
Q ss_pred EEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhh-ccccCCCCCHHHhhcccC
Q 012553 334 FLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW-AHEHEPVNNLLDAVKVIK 411 (461)
Q Consensus 334 iv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~f-A~~~~~~~~L~eaV~~vk 411 (461)
|.|+|| |..|.++|..++.. |. .....++|+|.+.-..+.-...+.+...++ ...-....++.+++++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~-----~~---~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~-- 70 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG-----SV---LLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKD-- 70 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC-----CC---CcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCC--
Confidence 578999 99999999887652 41 124689999985411111001122222222 0011113568899988
Q ss_pred CcEEEeccCCCCC--------------CCHHHHHHHhcCCCCcEEEEcCCCCchh
Q 012553 412 PTILIGSSGVGRT--------------FTKEVIEAMASFNEVVFQALLWLIRKFN 452 (461)
Q Consensus 412 ptvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIF~Lsnp~~~~ 452 (461)
+|++|=+.+.++. +-+++.++|.+++...+++-.+||-.++
T Consensus 71 aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~ 125 (263)
T cd00650 71 ADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDII 125 (263)
T ss_pred CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHH
Confidence 9999865554322 3578899999999999999999999876
No 56
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=94.81 E-value=0.055 Score=57.70 Aligned_cols=110 Identities=17% Similarity=0.192 Sum_probs=69.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHh-cCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccc-cCC-----CCCHH
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQ-TKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLL 404 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~-~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~-~~~-----~~~L~ 404 (461)
.||+|+||||+ =.-+++ ..+.+. ..+ ....|||+|-+ .+|.+.+...-+.+++. ..+ ..++.
T Consensus 1 ~KI~iIGgGS~--~tp~li-~~l~~~~~~l----~~~ei~L~Did----~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~ 69 (425)
T cd05197 1 VKIAIIGGGSS--FTPELV-SGLLKTPEEL----PISEVTLYDID----EERLDIILTIAKRYVEEVGADIKFEKTMDLE 69 (425)
T ss_pred CEEEEECCchH--hHHHHH-HHHHcChhhC----CCCEEEEEcCC----HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHH
Confidence 48999999996 333444 444332 134 35789999964 34422122222233222 112 25899
Q ss_pred HhhcccCCcEEEe--------------------------ccCCCCCCC--------HHHHHHHhcCCCCcEEEEcCCCCc
Q 012553 405 DAVKVIKPTILIG--------------------------SSGVGRTFT--------KEVIEAMASFNEVVFQALLWLIRK 450 (461)
Q Consensus 405 eaV~~vkptvLIG--------------------------~S~~~g~Ft--------~evv~~Ma~~~erPIIF~Lsnp~~ 450 (461)
+|+++ +|.+|- +.|+||.|. .++++.|.+++...+|+-.|||.-
T Consensus 70 ~Al~g--ADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~d 147 (425)
T cd05197 70 DAIID--ADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAG 147 (425)
T ss_pred HHhCC--CCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChHH
Confidence 99998 888871 234445443 389999999999999999999987
Q ss_pred hhhh
Q 012553 451 FNFC 454 (461)
Q Consensus 451 ~~~~ 454 (461)
.+--
T Consensus 148 i~t~ 151 (425)
T cd05197 148 EVTE 151 (425)
T ss_pred HHHH
Confidence 6643
No 57
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=94.68 E-value=0.1 Score=52.57 Aligned_cols=106 Identities=11% Similarity=0.135 Sum_probs=67.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhcccc-C-CCCCHHHhhccc
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-E-PVNNLLDAVKVI 410 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~-~-~~~~L~eaV~~v 410 (461)
||.|+|||.+|..+|..++.. |+ ..+|.++|.+-=..++-...|.+.. .+.... . ...+. +.+++
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~-----g~-----~~ei~l~D~~~~~~~~~a~dL~~~~-~~~~~~~~i~~~~~-~~l~~- 68 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQ-----GI-----ADELVLIDINEEKAEGEALDLEDAL-AFLPSPVKIKAGDY-SDCKD- 68 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhc-----CC-----CCEEEEEeCCcchhhHhHhhHHHHh-hccCCCeEEEcCCH-HHhCC-
Confidence 899999999999999987642 54 3579999985211111111121111 111100 0 11233 34665
Q ss_pred CCcEEEeccCCCCC--------------CCHHHHHHHhcCCCCcEEEEcCCCCchh
Q 012553 411 KPTILIGSSGVGRT--------------FTKEVIEAMASFNEVVFQALLWLIRKFN 452 (461)
Q Consensus 411 kptvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIF~Lsnp~~~~ 452 (461)
.|++|=+++.+.. +=+++.+.|.+++..-+|+-.|||-..+
T Consensus 69 -aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d~~ 123 (306)
T cd05291 69 -ADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDVI 123 (306)
T ss_pred -CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHH
Confidence 9999987776421 1267788888999999999999999865
No 58
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.58 E-value=0.12 Score=52.73 Aligned_cols=92 Identities=15% Similarity=0.137 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChh
Q 012553 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (461)
Q Consensus 311 aaV~LAgll~Alk~~g~~l~d~riv~~GAGs-AgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~ 389 (461)
.-+|-+|++..++-.+.+|+..+++|+|-|. .|..+|.+|.. .| ..+.+|+|+
T Consensus 139 ~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~-----~~-------atVtv~hs~-------------- 192 (285)
T PRK10792 139 RPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLL-----AG-------CTVTVCHRF-------------- 192 (285)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-----CC-------CeEEEEECC--------------
Confidence 4678889999999999999999999999998 99999998864 24 257778764
Q ss_pred hhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcC
Q 012553 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLW 446 (461)
Q Consensus 390 k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Ls 446 (461)
.++|.+.++. +|++|-..|.++.|+.++|+. .-+|.=..
T Consensus 193 ----------T~~l~~~~~~--ADIvi~avG~p~~v~~~~vk~------gavVIDvG 231 (285)
T PRK10792 193 ----------TKNLRHHVRN--ADLLVVAVGKPGFIPGEWIKP------GAIVIDVG 231 (285)
T ss_pred ----------CCCHHHHHhh--CCEEEEcCCCcccccHHHcCC------CcEEEEcc
Confidence 1358888887 999999999999999988873 45555444
No 59
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.48 E-value=0.16 Score=55.66 Aligned_cols=102 Identities=15% Similarity=0.123 Sum_probs=59.1
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCC----------cc---ccCCcCCCChhhhhhc
Q 012553 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG----------LI---VSSRKDSLQHFKKPWA 394 (461)
Q Consensus 328 ~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~G----------Li---~~~R~~~L~~~k~~fA 394 (461)
.....|++|+|||.+|.+.+..... .| | +++.+|.+- .- .+.+++ ......|+
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~-----lG-----A--~V~a~D~~~~rle~aeslGA~~v~i~~~e~--~~~~~gya 227 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGS-----LG-----A--IVRAFDTRPEVAEQVESMGAEFLELDFEEE--GGSGDGYA 227 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHH-----CC-----C--EEEEEeCCHHHHHHHHHcCCeEEEeccccc--cccccchh
Confidence 3458999999999999998776543 25 3 488887641 00 000000 00112233
Q ss_pred cccCCC------CCHHHhhcccCCcEEEeccCCCC-----CCCHHHHHHHhcCCCCcEEEEcCCC
Q 012553 395 HEHEPV------NNLLDAVKVIKPTILIGSSGVGR-----TFTKEVIEAMASFNEVVFQALLWLI 448 (461)
Q Consensus 395 ~~~~~~------~~L~eaV~~vkptvLIG~S~~~g-----~Ft~evv~~Ma~~~erPIIF~Lsnp 448 (461)
+...+. ..+.+.++ ++|++|.+++.+| ++|+++++.|.+ .-.|.=++.+
T Consensus 228 ~~~s~~~~~~~~~~~~~~~~--gaDVVIetag~pg~~aP~lit~~~v~~mkp---GgvIVdvg~~ 287 (509)
T PRK09424 228 KVMSEEFIKAEMALFAEQAK--EVDIIITTALIPGKPAPKLITAEMVASMKP---GSVIVDLAAE 287 (509)
T ss_pred hhcchhHHHHHHHHHHhccC--CCCEEEECCCCCcccCcchHHHHHHHhcCC---CCEEEEEccC
Confidence 321110 11233333 3999999999866 679999999975 3445545553
No 60
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=94.46 E-value=0.12 Score=51.31 Aligned_cols=128 Identities=21% Similarity=0.220 Sum_probs=86.2
Q ss_pred cCCCchhHHHHHHHHHHHHHhCCC-cccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCc
Q 012553 305 DDIQGTASVVLAGVVAALKLIGGT-LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK 383 (461)
Q Consensus 305 DDiQGTaaV~LAgll~Alk~~g~~-l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~ 383 (461)
|--+-||-=|..++-.+++..+.. +++.|++|-|.|..|...|+.+.+. | .+=+-+.|++|.|++..
T Consensus 5 ~~~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~-----G------a~vv~vsD~~G~i~~~~- 72 (244)
T PF00208_consen 5 GRSEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAEL-----G------AKVVAVSDSSGAIYDPD- 72 (244)
T ss_dssp TTTTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHT-----T------EEEEEEEESSEEEEETT-
T ss_pred CCCcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHc-----C------CEEEEEecCceEEEcCC-
Confidence 334567888888888999997766 9999999999999999999998763 5 24466779999988753
Q ss_pred CCCChhh-hhhccccCC-CCCH-----------HH--hhcccCCcEEEeccCCCCCCCHHHHH-HHhcCCCCcEEEEcCC
Q 012553 384 DSLQHFK-KPWAHEHEP-VNNL-----------LD--AVKVIKPTILIGSSGVGRTFTKEVIE-AMASFNEVVFQALLWL 447 (461)
Q Consensus 384 ~~L~~~k-~~fA~~~~~-~~~L-----------~e--aV~~vkptvLIG~S~~~g~Ft~evv~-~Ma~~~erPIIF~Lsn 447 (461)
.|+... ..+...... ...+ .+ .+-.++.||||=+ +.++.+|++.+. .+.+ .-+||.--+|
T Consensus 73 -Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~-A~~~~I~~~~~~~~i~~--~akiIvegAN 148 (244)
T PF00208_consen 73 -GLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPC-ALGNVINEDNAPSLIKS--GAKIIVEGAN 148 (244)
T ss_dssp -EEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEE-SSSTSBSCHHHCHCHHT--T-SEEEESSS
T ss_pred -CchHHHHHHHHHHhCCcccccccccccceeEeccccccccccccEEEEc-CCCCeeCHHHHHHHHhc--cCcEEEeCcc
Confidence 232211 111111111 1111 11 3444689999988 446799999988 6642 3578887777
Q ss_pred C
Q 012553 448 I 448 (461)
Q Consensus 448 p 448 (461)
-
T Consensus 149 ~ 149 (244)
T PF00208_consen 149 G 149 (244)
T ss_dssp S
T ss_pred h
Confidence 4
No 61
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=94.43 E-value=0.24 Score=48.21 Aligned_cols=104 Identities=19% Similarity=0.290 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHhC---------CCcccceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccC
Q 012553 312 SVVLAGVVAALKLIG---------GTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS 381 (461)
Q Consensus 312 aV~LAgll~Alk~~g---------~~l~d~riv~~GAG-sAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~ 381 (461)
-+|-.|++-=|+..+ .+++.++++|+|-+ ..|.-+|.||.. .| -.+.+||++|.....
T Consensus 34 PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~-----~~-------AtVti~~~~~~~~~~ 101 (197)
T cd01079 34 PCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLAN-----DG-------ARVYSVDINGIQVFT 101 (197)
T ss_pred CCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEEecCcccccc
Confidence 345556666666554 48999999999986 467777777754 24 368899999988866
Q ss_pred CcCCCChhhhhhccccCCCCCHHHhhcccCCcEEEeccCCCCC-CCHHHHHH
Q 012553 382 RKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRT-FTKEVIEA 432 (461)
Q Consensus 382 R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~-Ft~evv~~ 432 (461)
+...+.+.+.+ ..+...+|.|.++. +|++|-..+.++. ++.|+|+.
T Consensus 102 ~~~~~~hs~t~---~~~~~~~l~~~~~~--ADIVIsAvG~~~~~i~~d~ik~ 148 (197)
T cd01079 102 RGESIRHEKHH---VTDEEAMTLDCLSQ--SDVVITGVPSPNYKVPTELLKD 148 (197)
T ss_pred ccccccccccc---ccchhhHHHHHhhh--CCEEEEccCCCCCccCHHHcCC
Confidence 54322111100 00111248899998 9999999999998 89999983
No 62
>PTZ00117 malate dehydrogenase; Provisional
Probab=94.41 E-value=0.17 Score=51.68 Aligned_cols=112 Identities=21% Similarity=0.288 Sum_probs=70.2
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhcccc---CCCCCHHHh
Q 012553 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDA 406 (461)
Q Consensus 330 ~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~---~~~~~L~ea 406 (461)
+..||.|+|||+.|.++|.+++.. |+ ..+.|+|.+-=...+..-.+.+. ..+.... ....+++ +
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~-----~~------~~l~L~Di~~~~~~g~~lDl~~~-~~~~~~~~~i~~~~d~~-~ 70 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQK-----NL------GDVVLYDVIKGVPQGKALDLKHF-STLVGSNINILGTNNYE-D 70 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHC-----CC------CeEEEEECCCccchhHHHHHhhh-ccccCCCeEEEeCCCHH-H
Confidence 345999999999999999877642 54 25999997421111110002111 1111110 1124565 6
Q ss_pred hcccCCcEEEeccCCCC--------------CCCHHHHHHHhcCCCCcEEEEcCCCCchhhhhhh
Q 012553 407 VKVIKPTILIGSSGVGR--------------TFTKEVIEAMASFNEVVFQALLWLIRKFNFCSLF 457 (461)
Q Consensus 407 V~~vkptvLIG~S~~~g--------------~Ft~evv~~Ma~~~erPIIF~Lsnp~~~~~~~~~ 457 (461)
+++ +|++|=+.+.+. -+-+++.+.|.+++..-+++-.|||..++ |..+
T Consensus 71 l~~--ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~-t~~~ 132 (319)
T PTZ00117 71 IKD--SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCM-VKVF 132 (319)
T ss_pred hCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHH-HHHH
Confidence 777 899986665542 23458999999999999888889999877 4444
No 63
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=94.32 E-value=0.06 Score=51.35 Aligned_cols=104 Identities=20% Similarity=0.176 Sum_probs=66.6
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCC--------cCCCChhhhhhcc---
Q 012553 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSR--------KDSLQHFKKPWAH--- 395 (461)
Q Consensus 327 ~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R--------~~~L~~~k~~fA~--- 395 (461)
++|.+.||+++|+|..|.-+|+.|+.+ |+ ++|+++|.+=+ ..+. .+.+-..|..-+.
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~-----Gv------~~i~lvD~d~v-e~sNL~Rq~l~~~~diG~~Ka~~~~~~l 84 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGA-----GV------GTIVIVDDDHV-DLSNLQRQILFTEEDVGRPKVEVAAQRL 84 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEecCCEE-cccchhhhhccChhhCCChHHHHHHHHH
Confidence 578999999999999999999999764 64 69999998732 1110 0001111111110
Q ss_pred -c-c---------CCC--CCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcC
Q 012553 396 -E-H---------EPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLW 446 (461)
Q Consensus 396 -~-~---------~~~--~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Ls 446 (461)
. . ... .++.+.++. .|++|.+... .=+..++..++.....|.|++-.
T Consensus 85 ~~~np~v~i~~~~~~i~~~~~~~~~~~--~D~Vi~~~d~--~~~r~~l~~~~~~~~ip~i~~~~ 144 (202)
T TIGR02356 85 RELNSDIQVTALKERVTAENLELLINN--VDLVLDCTDN--FATRYLINDACVALGTPLISAAV 144 (202)
T ss_pred HHhCCCCEEEEehhcCCHHHHHHHHhC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEEe
Confidence 0 0 011 235566665 8999987653 34566788888888899998753
No 64
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.29 E-value=0.057 Score=49.26 Aligned_cols=91 Identities=20% Similarity=0.320 Sum_probs=52.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhh--hhccc---cCC---CCCHH
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK--PWAHE---HEP---VNNLL 404 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~--~fA~~---~~~---~~~L~ 404 (461)
||.|+|||+.|+++|..+... | .++.|.+++.-..+ .++.... .|... ... ..+|+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-----g-------~~V~l~~~~~~~~~----~i~~~~~n~~~~~~~~l~~~i~~t~dl~ 64 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-----G-------HEVTLWGRDEEQIE----EINETRQNPKYLPGIKLPENIKATTDLE 64 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-----T-------EEEEEETSCHHHHH----HHHHHTSETTTSTTSBEETTEEEESSHH
T ss_pred CEEEECcCHHHHHHHHHHHHc-----C-------CEEEEEeccHHHHH----HHHHhCCCCCCCCCcccCcccccccCHH
Confidence 789999999999999998763 4 46777776531111 1111110 11110 111 25799
Q ss_pred HhhcccCCcEEEeccCCCCCCCHHHHHHHhcCC--CCcEEE
Q 012553 405 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN--EVVFQA 443 (461)
Q Consensus 405 eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~--erPIIF 443 (461)
+++++ +|++| ++.+. .+-+++++.++.+- ..|||+
T Consensus 65 ~a~~~--ad~Ii-iavPs-~~~~~~~~~l~~~l~~~~~ii~ 101 (157)
T PF01210_consen 65 EALED--ADIII-IAVPS-QAHREVLEQLAPYLKKGQIIIS 101 (157)
T ss_dssp HHHTT---SEEE-E-S-G-GGHHHHHHHHTTTSHTT-EEEE
T ss_pred HHhCc--ccEEE-ecccH-HHHHHHHHHHhhccCCCCEEEE
Confidence 99987 78776 43333 45688999998754 344443
No 65
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=94.22 E-value=0.25 Score=45.95 Aligned_cols=108 Identities=11% Similarity=-0.014 Sum_probs=70.0
Q ss_pred HHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccccCCCC
Q 012553 322 LKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVN 401 (461)
Q Consensus 322 lk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~ 401 (461)
....+..|.+++|.|+|.|..|..+|+++... |+ +++.+|+..-- .. .+....-...
T Consensus 27 ~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~f-----G~-------~V~~~d~~~~~----------~~-~~~~~~~~~~ 83 (178)
T PF02826_consen 27 ERFPGRELRGKTVGIIGYGRIGRAVARRLKAF-----GM-------RVIGYDRSPKP----------EE-GADEFGVEYV 83 (178)
T ss_dssp TTTTBS-STTSEEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSCHH----------HH-HHHHTTEEES
T ss_pred cCCCccccCCCEEEEEEEcCCcCeEeeeeecC-----Cc-------eeEEecccCCh----------hh-hcccccceee
Confidence 34567889999999999999999999998743 64 78888885321 00 1111111234
Q ss_pred CHHHhhcccCCcEEEecc----CCCCCCCHHHHHHHhcCCCCcEEEEcCCCCchhhhhhh
Q 012553 402 NLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEVVFQALLWLIRKFNFCSLF 457 (461)
Q Consensus 402 ~L~eaV~~vkptvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIF~Lsnp~~~~~~~~~ 457 (461)
+|.|+++. .|+++=.- ...+.|+++.++.|.+ .-++.-.|--.-+.|..|.
T Consensus 84 ~l~ell~~--aDiv~~~~plt~~T~~li~~~~l~~mk~---ga~lvN~aRG~~vde~aL~ 138 (178)
T PF02826_consen 84 SLDELLAQ--ADIVSLHLPLTPETRGLINAEFLAKMKP---GAVLVNVARGELVDEDALL 138 (178)
T ss_dssp SHHHHHHH---SEEEE-SSSSTTTTTSBSHHHHHTSTT---TEEEEESSSGGGB-HHHHH
T ss_pred ehhhhcch--hhhhhhhhccccccceeeeeeeeecccc---ceEEEeccchhhhhhhHHH
Confidence 78888887 88887432 2236888988888875 5577666666555555554
No 66
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=94.05 E-value=0.48 Score=51.97 Aligned_cols=167 Identities=14% Similarity=0.213 Sum_probs=88.3
Q ss_pred hhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCcccHHHHHHHHcCCCceec--cCCCchhHHH
Q 012553 237 EQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFN--DDIQGTASVV 314 (461)
Q Consensus 237 e~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~~lIq~EDf~~~~af~iL~ryr~~~~~Fn--DDiQGTaaV~ 314 (461)
+.|..+-.|+|+-|+-.. .++++.+. ++ .-.+|-+|.+-. . .|- .+..+|. ..|-|-.+|.
T Consensus 80 ~~l~~g~tli~~l~p~~n----~~ll~~l~----~k--~it~ia~E~vpr--i----sra-q~~d~lssma~iAGy~Avi 142 (511)
T TIGR00561 80 AELPAGKALVSFIWPAQN----PELMEKLA----AK--NITVLAMDAVPR--I----SRA-QKLDALSSMANIAGYRAII 142 (511)
T ss_pred HhcCCCCEEEEEcCccCC----HHHHHHHH----Hc--CCEEEEeecccc--c----ccC-CccCcchhhHHHHHHHHHH
Confidence 445566777777775331 23333332 21 234566775531 0 111 2233333 3556666665
Q ss_pred HHHHHHHHHHhC-----CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCC---
Q 012553 315 LAGVVAALKLIG-----GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL--- 386 (461)
Q Consensus 315 LAgll~Alk~~g-----~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L--- 386 (461)
.|+=.-.-...| ......|++|+|+|.+|+..+..+... |. +++++|.+.-.-. +...+
T Consensus 143 ~Aa~~lgr~~~g~~taag~vp~akVlViGaG~iGl~Aa~~ak~l-----GA-------~V~v~d~~~~rle-~a~~lGa~ 209 (511)
T TIGR00561 143 EAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAANSL-----GA-------IVRAFDTRPEVKE-QVQSMGAE 209 (511)
T ss_pred HHHHHhhhhcCCceecCCCCCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEeCCHHHHH-HHHHcCCe
Confidence 554333222222 134568999999999999988776542 52 4777777643110 00001
Q ss_pred ----Ch-----hhhhhccccCC------CCCHHHhhcccCCcEEEeccCCCC-----CCCHHHHHHHhc
Q 012553 387 ----QH-----FKKPWAHEHEP------VNNLLDAVKVIKPTILIGSSGVGR-----TFTKEVIEAMAS 435 (461)
Q Consensus 387 ----~~-----~k~~fA~~~~~------~~~L~eaV~~vkptvLIG~S~~~g-----~Ft~evv~~Ma~ 435 (461)
+. ...-||+...+ ..-+.+.++. .|++|++.-.+| ++|+++++.|..
T Consensus 210 ~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~--~DIVI~TalipG~~aP~Lit~emv~~MKp 276 (511)
T TIGR00561 210 FLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKE--VDIIITTALIPGKPAPKLITEEMVDSMKA 276 (511)
T ss_pred EEeccccccccccccceeecCHHHHHHHHHHHHHHhCC--CCEEEECcccCCCCCCeeehHHHHhhCCC
Confidence 00 00112221110 0125566666 999999983333 599999999986
No 67
>PTZ00325 malate dehydrogenase; Provisional
Probab=94.00 E-value=0.27 Score=50.66 Aligned_cols=110 Identities=17% Similarity=0.190 Sum_probs=70.3
Q ss_pred cccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhc-cccCCCCCHHHh
Q 012553 329 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA-HEHEPVNNLLDA 406 (461)
Q Consensus 329 l~d~riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA-~~~~~~~~L~ea 406 (461)
++-.||+|.|| |..|..+|..|+. .|+ ...+.|+|.+ .. .+-.-.|.+....+- .......+..++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~-----~~~-----~~elvL~Di~-~~-~g~a~Dl~~~~~~~~v~~~td~~~~~~~ 73 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQ-----NPH-----VSELSLYDIV-GA-PGVAADLSHIDTPAKVTGYADGELWEKA 73 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhc-----CCC-----CCEEEEEecC-CC-cccccchhhcCcCceEEEecCCCchHHH
Confidence 34469999999 9999999987752 243 4689999982 21 110001322111100 011111334788
Q ss_pred hcccCCcEEEeccCCCCC--------------CCHHHHHHHhcCCCCcEEEEcCCCCchh
Q 012553 407 VKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEVVFQALLWLIRKFN 452 (461)
Q Consensus 407 V~~vkptvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIF~Lsnp~~~~ 452 (461)
+++ .|++|=+.+.+.. ..++++++|.+++.+.||+.-|||-..+
T Consensus 74 l~g--aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~ 131 (321)
T PTZ00325 74 LRG--ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNST 131 (321)
T ss_pred hCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHH
Confidence 998 8988855555322 5568999999999999999999997653
No 68
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.77 E-value=0.22 Score=50.76 Aligned_cols=84 Identities=20% Similarity=0.332 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcchH-HHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChh
Q 012553 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGEA-GTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (461)
Q Consensus 311 aaV~LAgll~Alk~~g~~l~d~riv~~GAGsA-giGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~ 389 (461)
.-+|-.|++.-++-.+.++++.+++++|.|.- |.-+|.+|... |. .+.+|+++
T Consensus 138 ~PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~-----~a-------tVt~~hs~-------------- 191 (285)
T PRK14189 138 RPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQA-----GA-------TVTICHSK-------------- 191 (285)
T ss_pred cCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHC-----CC-------EEEEecCC--------------
Confidence 45678889999999999999999999999988 99999998642 42 56666542
Q ss_pred hhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHH
Q 012553 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEA 432 (461)
Q Consensus 390 k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~ 432 (461)
..+|.+.++. +|++|-..+.++.|+.++++.
T Consensus 192 ----------t~~l~~~~~~--ADIVV~avG~~~~i~~~~ik~ 222 (285)
T PRK14189 192 ----------TRDLAAHTRQ--ADIVVAAVGKRNVLTADMVKP 222 (285)
T ss_pred ----------CCCHHHHhhh--CCEEEEcCCCcCccCHHHcCC
Confidence 1357788887 999999999999999988773
No 69
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=93.76 E-value=0.65 Score=49.07 Aligned_cols=53 Identities=23% Similarity=0.315 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcC
Q 012553 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (461)
Q Consensus 310 TaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs 374 (461)
.|=-+++.+++..|..|..|.+.++.|+|.|..|..+|+.+... |+ +++.+|.
T Consensus 95 VAE~v~~~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~l~a~-----G~-------~V~~~Dp 147 (381)
T PRK00257 95 VVDYVLGSLLTLAEREGVDLAERTYGVVGAGHVGGRLVRVLRGL-----GW-------KVLVCDP 147 (381)
T ss_pred HHHHHHHHHHHHhcccCCCcCcCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEECC
Confidence 34457899999999999999999999999999999999998643 65 6888886
No 70
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=93.64 E-value=0.18 Score=51.72 Aligned_cols=107 Identities=19% Similarity=0.259 Sum_probs=67.8
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhh-hhhcccc---CCCCCHHHh
Q 012553 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK-KPWAHEH---EPVNNLLDA 406 (461)
Q Consensus 331 d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k-~~fA~~~---~~~~~L~ea 406 (461)
-.||.|+|||..|.++|.+++. .|+ ..+.|+|.+-=...+. .++-.. ..+.... ....++ ++
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~-----~gl------~~i~LvDi~~~~~~~~--~ld~~~~~~~~~~~~~I~~~~d~-~~ 71 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVL-----KNL------GDVVLFDIVKNIPQGK--ALDISHSNVIAGSNSKVIGTNNY-ED 71 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----CCC------CeEEEEeCCCchhhHH--HHHHHhhhhccCCCeEEEECCCH-HH
Confidence 3699999999999999998654 365 2399999743221111 121111 1111111 112456 56
Q ss_pred hcccCCcEEEeccCCCCC-------------------CCHHHHHHHhcCCCCcEEEEcCCCCchhh
Q 012553 407 VKVIKPTILIGSSGVGRT-------------------FTKEVIEAMASFNEVVFQALLWLIRKFNF 453 (461)
Q Consensus 407 V~~vkptvLIG~S~~~g~-------------------Ft~evv~~Ma~~~erPIIF~Lsnp~~~~~ 453 (461)
+++ +|++|=+.+.++. +-.++++.|.+++..-+++--|||..++-
T Consensus 72 l~~--aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t 135 (321)
T PTZ00082 72 IAG--SDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMV 135 (321)
T ss_pred hCC--CCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHH
Confidence 776 8999965554421 13578888888897779999999998763
No 71
>PLN02928 oxidoreductase family protein
Probab=93.56 E-value=0.66 Score=48.15 Aligned_cols=120 Identities=16% Similarity=0.166 Sum_probs=73.7
Q ss_pred CchhHHHHHHHHHHHHH----------------hCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEE
Q 012553 308 QGTASVVLAGVVAALKL----------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICL 371 (461)
Q Consensus 308 QGTaaV~LAgll~Alk~----------------~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~l 371 (461)
+.+|--+++.+++.+|- .+..|.++++.|+|.|..|..+|+.+... |+ +++.
T Consensus 120 ~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvGIiG~G~IG~~vA~~l~af-----G~-------~V~~ 187 (347)
T PLN02928 120 ASCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRPF-----GV-------KLLA 187 (347)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccCCCCCEEEEECCCHHHHHHHHHHhhC-----CC-------EEEE
Confidence 34556667777766653 24579999999999999999999998642 64 6888
Q ss_pred EcCCCccccCCcCCC--C-hhhhhhccccCCCCCHHHhhcccCCcEEEecc----CCCCCCCHHHHHHHhcCCCCcEEEE
Q 012553 372 VDSKGLIVSSRKDSL--Q-HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEVVFQAL 444 (461)
Q Consensus 372 vDs~GLi~~~R~~~L--~-~~k~~fA~~~~~~~~L~eaV~~vkptvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIF~ 444 (461)
+|+.. .......+ + ..-..+........+|.|+++. .|+++-.- ...+.|+++.+..|.+ ..+|.=
T Consensus 188 ~dr~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~--aDiVvl~lPlt~~T~~li~~~~l~~Mk~---ga~lIN 260 (347)
T PLN02928 188 TRRSW--TSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGE--ADIVVLCCTLTKETAGIVNDEFLSSMKK---GALLVN 260 (347)
T ss_pred ECCCC--ChhhhhhhccccccccccccccCcccCHHHHHhh--CCEEEECCCCChHhhcccCHHHHhcCCC---CeEEEE
Confidence 88742 01000000 0 0000111111134579999987 89888542 2246899999999865 445544
Q ss_pred cC
Q 012553 445 LW 446 (461)
Q Consensus 445 Ls 446 (461)
.|
T Consensus 261 va 262 (347)
T PLN02928 261 IA 262 (347)
T ss_pred CC
Confidence 43
No 72
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.52 E-value=0.14 Score=47.84 Aligned_cols=97 Identities=20% Similarity=0.112 Sum_probs=57.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCc-------CCCChhhhhhcc----cc-CC-
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK-------DSLQHFKKPWAH----EH-EP- 399 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~-------~~L~~~k~~fA~----~~-~~- 399 (461)
||+++|+|..|..||+.|+.+ |+ .+|.++|.+= +..+.- +.+...|..-+. .. +.
T Consensus 1 ~VlViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D~-v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v 68 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-----GV------GNLKLVDFDV-VEPSNLNRQQYFLSQIGEPKVEALKENLREINPFV 68 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCCE-EcCcchhcccccHhhCCChHHHHHHHHHHHHCCCC
Confidence 689999999999999999764 64 6899999873 222110 011111211111 00 10
Q ss_pred ----------CCCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEE
Q 012553 400 ----------VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQAL 444 (461)
Q Consensus 400 ----------~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~ 444 (461)
..++.+.++. .|++|.++... .....+.+...++...|+|++
T Consensus 69 ~i~~~~~~~~~~~~~~~l~~--~DlVi~~~d~~-~~r~~i~~~~~~~~~ip~i~~ 120 (174)
T cd01487 69 KIEAINIKIDENNLEGLFGD--CDIVVEAFDNA-ETKAMLAESLLGNKNKPVVCA 120 (174)
T ss_pred EEEEEEeecChhhHHHHhcC--CCEEEECCCCH-HHHHHHHHHHHHHCCCCEEEE
Confidence 1245566776 89999885422 222335566666657999997
No 73
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.44 E-value=0.3 Score=50.28 Aligned_cols=92 Identities=14% Similarity=0.206 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChh
Q 012553 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (461)
Q Consensus 311 aaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~ 389 (461)
.-+|-+|++.=++-.|.+++.++|+|+|.| ..|..+|.+|... | -.+++++++ .
T Consensus 139 ~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~-----g-------atVtv~~~~--------t----- 193 (301)
T PRK14194 139 TPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQA-----H-------CSVTVVHSR--------S----- 193 (301)
T ss_pred CCCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHC-----C-------CEEEEECCC--------C-----
Confidence 356778888899999999999999999996 9999999999753 5 357777653 0
Q ss_pred hhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcC
Q 012553 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLW 446 (461)
Q Consensus 390 k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Ls 446 (461)
.++.|+++. +|++|-..+.++.+++++++ +.-||.=++
T Consensus 194 -----------~~l~e~~~~--ADIVIsavg~~~~v~~~~ik------~GaiVIDvg 231 (301)
T PRK14194 194 -----------TDAKALCRQ--ADIVVAAVGRPRLIDADWLK------PGAVVIDVG 231 (301)
T ss_pred -----------CCHHHHHhc--CCEEEEecCChhcccHhhcc------CCcEEEEec
Confidence 168888887 89999888888888888744 355676666
No 74
>PRK06223 malate dehydrogenase; Reviewed
Probab=93.43 E-value=0.17 Score=50.64 Aligned_cols=100 Identities=18% Similarity=0.239 Sum_probs=63.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccc----c-----CCCCC
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----H-----EPVNN 402 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~----~-----~~~~~ 402 (461)
.||.|+|||..|.++|..++.. |+ . .++++|.. .++ +......+.+. . ....+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~-----~~-----~-ev~L~D~~----~~~---~~~~~~dl~~~~~~~~~~~~i~~~~d 64 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALK-----EL-----G-DVVLFDIV----EGV---PQGKALDIAEAAPVEGFDTKITGTND 64 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC-----e-EEEEEECC----Cch---hHHHHHHHHhhhhhcCCCcEEEeCCC
Confidence 5899999999999999987642 44 2 79999982 111 11111111110 0 01234
Q ss_pred HHHhhcccCCcEEEeccCCC---C-----------CCCHHHHHHHhcCCCCcEEEEcCCCCchh
Q 012553 403 LLDAVKVIKPTILIGSSGVG---R-----------TFTKEVIEAMASFNEVVFQALLWLIRKFN 452 (461)
Q Consensus 403 L~eaV~~vkptvLIG~S~~~---g-----------~Ft~evv~~Ma~~~erPIIF~Lsnp~~~~ 452 (461)
. ++++. +|++|=+.+.+ | -.-+++++.|.+.+...+++-.+||...+
T Consensus 65 ~-~~~~~--aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~ 125 (307)
T PRK06223 65 Y-EDIAG--SDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAM 125 (307)
T ss_pred H-HHHCC--CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHH
Confidence 5 55776 89988433322 2 23457788888889899888889999776
No 75
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.34 E-value=0.22 Score=50.70 Aligned_cols=84 Identities=20% Similarity=0.345 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCCh
Q 012553 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (461)
Q Consensus 310 TaaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~ 388 (461)
=.-+|-+|++.=++-.+.+++..+++++|.+ .-|..+|.++... | ..+..++++
T Consensus 131 ~~PcTp~av~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~-----~-------atVtv~hs~------------- 185 (279)
T PRK14178 131 FAPCTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNA-----D-------ATVTICHSK------------- 185 (279)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCccccHHHHHHHHhC-----C-------CeeEEEecC-------------
Confidence 3466788889999999999999999999998 8888888887542 3 356666653
Q ss_pred hhhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHH
Q 012553 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (461)
Q Consensus 389 ~k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~ 431 (461)
..+|.+.++. +|++|+.-+.++.+|+++|+
T Consensus 186 -----------t~~L~~~~~~--ADIvI~Avgk~~lv~~~~vk 215 (279)
T PRK14178 186 -----------TENLKAELRQ--ADILVSAAGKAGFITPDMVK 215 (279)
T ss_pred -----------hhHHHHHHhh--CCEEEECCCcccccCHHHcC
Confidence 1358899987 99999999988999999983
No 76
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=93.23 E-value=0.25 Score=50.50 Aligned_cols=108 Identities=10% Similarity=0.144 Sum_probs=68.5
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccccC-CCCCHHHhhcc
Q 012553 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE-PVNNLLDAVKV 409 (461)
Q Consensus 331 d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~-~~~~L~eaV~~ 409 (461)
..||.|+|||..|..+|-.|+. .|+ ...|.|+|..-=..++-.-.|.+.. +|-+... ..++. +.+++
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~-----~~~-----~~el~L~D~~~~~~~g~~~Dl~~~~-~~~~~~~i~~~~~-~~~~~ 73 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVN-----QGI-----ADELVIIDINKEKAEGDAMDLSHAV-PFTSPTKIYAGDY-SDCKD 73 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCCchhHHHHHHHHhhc-cccCCeEEEeCCH-HHhCC
Confidence 3599999999999999998764 265 3679999973211111100122211 2211100 11344 45776
Q ss_pred cCCcEEEeccCCCCC--------------CCHHHHHHHhcCCCCcEEEEcCCCCchh
Q 012553 410 IKPTILIGSSGVGRT--------------FTKEVIEAMASFNEVVFQALLWLIRKFN 452 (461)
Q Consensus 410 vkptvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIF~Lsnp~~~~ 452 (461)
+|++|=+.+.+.. +=+++++.+.+++...+|+-.+||.+.+
T Consensus 74 --adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d~~ 128 (315)
T PRK00066 74 --ADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVDIL 128 (315)
T ss_pred --CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHHHH
Confidence 9999966665321 1256788888899999999999999876
No 77
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.17 E-value=0.35 Score=49.45 Aligned_cols=85 Identities=15% Similarity=0.275 Sum_probs=69.4
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCCh
Q 012553 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (461)
Q Consensus 310 TaaV~LAgll~Alk~~g~~l~d~riv~~GAGs-AgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~ 388 (461)
=.-+|-.|++..++-.+.+++..++||+|.+. -|..+|.+|... | ..+.+|+++
T Consensus 143 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~-----~-------atVtv~hs~------------- 197 (287)
T PRK14176 143 LVPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNR-----N-------ATVSVCHVF------------- 197 (287)
T ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHC-----C-------CEEEEEecc-------------
Confidence 34678889999999999999999999999998 899999988642 4 256777752
Q ss_pred hhhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHH
Q 012553 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEA 432 (461)
Q Consensus 389 ~k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~ 432 (461)
.++|.+.+++ +|++|-..|.++.+|+++|+.
T Consensus 198 -----------T~~l~~~~~~--ADIvv~AvG~p~~i~~~~vk~ 228 (287)
T PRK14176 198 -----------TDDLKKYTLD--ADILVVATGVKHLIKADMVKE 228 (287)
T ss_pred -----------CCCHHHHHhh--CCEEEEccCCccccCHHHcCC
Confidence 1247888887 999999999999999998873
No 78
>PRK08605 D-lactate dehydrogenase; Validated
Probab=93.17 E-value=0.49 Score=48.61 Aligned_cols=92 Identities=11% Similarity=0.123 Sum_probs=54.6
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccccCCCCCHHH
Q 012553 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 405 (461)
Q Consensus 326 g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e 405 (461)
|..|.+++|.|+|+|..|..+|+.+..+ .|+ ++|.+|+..- ... ..++ ....+|.|
T Consensus 141 ~~~l~g~~VgIIG~G~IG~~vA~~L~~~----~g~-------~V~~~d~~~~------~~~----~~~~---~~~~~l~e 196 (332)
T PRK08605 141 SRSIKDLKVAVIGTGRIGLAVAKIFAKG----YGS-------DVVAYDPFPN------AKA----ATYV---DYKDTIEE 196 (332)
T ss_pred cceeCCCEEEEECCCHHHHHHHHHHHhc----CCC-------EEEEECCCcc------HhH----Hhhc---cccCCHHH
Confidence 4568899999999999999999998533 243 6888886420 000 0111 11235777
Q ss_pred hhcccCCcEEEecc----CCCCCCCHHHHHHHhcCCCCcEEEEcC
Q 012553 406 AVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEVVFQALLW 446 (461)
Q Consensus 406 aV~~vkptvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIF~Ls 446 (461)
+++. .|+++=.. ...++++++.++.|.+ ..++.=+|
T Consensus 197 ll~~--aDvIvl~lP~t~~t~~li~~~~l~~mk~---gailIN~s 236 (332)
T PRK08605 197 AVEG--ADIVTLHMPATKYNHYLFNADLFKHFKK---GAVFVNCA 236 (332)
T ss_pred HHHh--CCEEEEeCCCCcchhhhcCHHHHhcCCC---CcEEEECC
Confidence 7765 67666431 1123555666666643 34554444
No 79
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=93.00 E-value=0.19 Score=53.64 Aligned_cols=110 Identities=14% Similarity=0.164 Sum_probs=66.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccc-cCC-----CCCHHH
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLLD 405 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~-~~~-----~~~L~e 405 (461)
.||+|+||||+ -...++...+.+...+ ....|||+|-+- ..|-+.+...-+.+... ..+ ..++.+
T Consensus 1 ~KI~iIGaGS~--~tp~li~~l~~~~~~l----~~~ei~L~Did~---~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~ 71 (419)
T cd05296 1 MKLTIIGGGSS--YTPELIEGLIRRYEEL----PVTELVLVDIDE---EEKLEIVGALAKRMVKKAGLPIKVHLTTDRRE 71 (419)
T ss_pred CEEEEECCchH--hHHHHHHHHHhccccC----CCCEEEEecCCh---HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHH
Confidence 48999999996 4444443333222233 357899999852 22211111111222221 111 258999
Q ss_pred hhcccCCcEEEeccCCCCC----------------------------------CCHHHHHHHhcCCCCcEEEEcCCCCch
Q 012553 406 AVKVIKPTILIGSSGVGRT----------------------------------FTKEVIEAMASFNEVVFQALLWLIRKF 451 (461)
Q Consensus 406 aV~~vkptvLIG~S~~~g~----------------------------------Ft~evv~~Ma~~~erPIIF~Lsnp~~~ 451 (461)
|+++ +|.+|-.-.+||. .=.++++.|.+++..-+|+=.|||...
T Consensus 72 al~g--adfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~i 149 (419)
T cd05296 72 ALEG--ADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAGI 149 (419)
T ss_pred HhCC--CCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHHH
Confidence 9998 8888744443331 223888889999999999999999875
Q ss_pred h
Q 012553 452 N 452 (461)
Q Consensus 452 ~ 452 (461)
+
T Consensus 150 v 150 (419)
T cd05296 150 V 150 (419)
T ss_pred H
Confidence 4
No 80
>PRK08223 hypothetical protein; Validated
Probab=92.95 E-value=0.18 Score=51.51 Aligned_cols=124 Identities=11% Similarity=-0.009 Sum_probs=77.9
Q ss_pred HHHHHHHcCCCceeccCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceE
Q 012553 290 FELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKI 369 (461)
Q Consensus 290 f~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i 369 (461)
|..-++|..++..|..+- -.+|++.||+|+|+|..|.-+|+.|+.+ |+ .+|
T Consensus 4 ~~~~~~ysRq~~~iG~e~------------------Q~kL~~s~VlIvG~GGLGs~va~~LA~a-----GV------G~i 54 (287)
T PRK08223 4 FDYDEAFCRNLGWITPTE------------------QQRLRNSRVAIAGLGGVGGIHLLTLARL-----GI------GKF 54 (287)
T ss_pred ccHHHHHhhhhhhcCHHH------------------HHHHhcCCEEEECCCHHHHHHHHHHHHh-----CC------CeE
Confidence 667777765555554332 2578899999999999999999999875 65 689
Q ss_pred EEEcCCCccccCCc-------CCCChhhhhhccc----c-C---------C--CCCHHHhhcccCCcEEEeccCCCCCCC
Q 012553 370 CLVDSKGLIVSSRK-------DSLQHFKKPWAHE----H-E---------P--VNNLLDAVKVIKPTILIGSSGVGRTFT 426 (461)
Q Consensus 370 ~lvDs~GLi~~~R~-------~~L~~~k~~fA~~----~-~---------~--~~~L~eaV~~vkptvLIG~S~~~g~Ft 426 (461)
.++|.+=+=..+-. +.+-..|..-|.+ . + . ..++.+.+++ .|++|=.+-....=+
T Consensus 55 ~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~--~DlVvD~~D~~~~~~ 132 (287)
T PRK08223 55 TIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEGIGKENADAFLDG--VDVYVDGLDFFEFDA 132 (287)
T ss_pred EEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecccCccCHHHHHhC--CCEEEECCCCCcHHH
Confidence 99998743222110 1122223222211 0 1 1 1356777776 798883332110125
Q ss_pred HHHHHHHhcCCCCcEEEE
Q 012553 427 KEVIEAMASFNEVVFQAL 444 (461)
Q Consensus 427 ~evv~~Ma~~~erPIIF~ 444 (461)
.-.|...|.....|.|.+
T Consensus 133 r~~ln~~c~~~~iP~V~~ 150 (287)
T PRK08223 133 RRLVFAACQQRGIPALTA 150 (287)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 677888888888999987
No 81
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=92.89 E-value=0.23 Score=50.23 Aligned_cols=50 Identities=30% Similarity=0.375 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 315 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 315 LAgll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
..|++.+++-.+.++++.+++++|||-|+.+|+-.+.. .|+ ++|+++++.
T Consensus 108 ~~Gf~~~l~~~~~~~~~k~vlvlGaGGaarAi~~~l~~-----~g~------~~i~i~nRt 157 (288)
T PRK12749 108 GTGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAI-----EGL------KEIKLFNRR 157 (288)
T ss_pred HHHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 35677888878888999999999999999888776654 254 689999984
No 82
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.85 E-value=0.11 Score=51.64 Aligned_cols=99 Identities=17% Similarity=0.147 Sum_probs=55.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhh-------hhhc----------
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK-------KPWA---------- 394 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k-------~~fA---------- 394 (461)
.+|.|+|+|..|.+||..+... | .+++++|..- . .++..+ ..+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-----G-------~~V~l~d~~~----~---~l~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-----G-------FDVTIYDISD----E---ALEKAKERIAKLADRYVRDLEATKEAP 64 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-----C-------CeEEEEeCCH----H---HHHHHHHHHHHHHHHHHHcCCCChhhh
Confidence 5899999999999999887643 4 3688888641 1 111111 0000
Q ss_pred -c----ccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcCCCCchh
Q 012553 395 -H----EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLWLIRKFN 452 (461)
Q Consensus 395 -~----~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Lsnp~~~~ 452 (461)
. .-....++.++++. +|++|=+-.-.-.+.+++++...+......|+ .+|.|.+.
T Consensus 65 ~~~~~~~i~~~~d~~~a~~~--aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii-~sntSt~~ 124 (287)
T PRK08293 65 AEAALNRITLTTDLAEAVKD--ADLVIEAVPEDPEIKGDFYEELAKVAPEKTIF-ATNSSTLL 124 (287)
T ss_pred HHHHHcCeEEeCCHHHHhcC--CCEEEEeccCCHHHHHHHHHHHHhhCCCCCEE-EECcccCC
Confidence 0 00012467777776 77777533212135666666666655444444 34666553
No 83
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=92.82 E-value=0.13 Score=53.14 Aligned_cols=102 Identities=21% Similarity=0.233 Sum_probs=66.5
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccC---Cc-----CCCC--hhhhhhc--
Q 012553 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS---RK-----DSLQ--HFKKPWA-- 394 (461)
Q Consensus 327 ~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~---R~-----~~L~--~~k~~fA-- 394 (461)
.+|++.+|+|+|+|..|..+|+.|+.+ |+ .+|.++|.+=+ ..+ |. +... ..|..-|
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~a-----Gv------g~i~lvD~D~v-e~sNL~RQ~l~~~~d~~~g~~Ka~aa~~ 87 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRA-----GI------GKLTIADRDYV-EWSNLQRQQLYTEEDAKQKKPKAIAAKE 87 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCCcc-cccccCccccccHHHccCCccHHHHHHH
Confidence 578899999999999999999999875 64 68999999742 211 10 0000 0011111
Q ss_pred --cc-cC---------C--CCCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEE
Q 012553 395 --HE-HE---------P--VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQAL 444 (461)
Q Consensus 395 --~~-~~---------~--~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~ 444 (461)
+. .+ . ..++.+.++. .|++|-++.. .-+..++..++.....|.|++
T Consensus 88 ~l~~inp~v~i~~~~~~~~~~~~~~~~~~--~DlVid~~D~--~~~r~~in~~~~~~~ip~i~~ 147 (338)
T PRK12475 88 HLRKINSEVEIVPVVTDVTVEELEELVKE--VDLIIDATDN--FDTRLLINDLSQKYNIPWIYG 147 (338)
T ss_pred HHHHHCCCcEEEEEeccCCHHHHHHHhcC--CCEEEEcCCC--HHHHHHHHHHHHHcCCCEEEE
Confidence 00 00 1 1346777776 8999988752 346677888888888999986
No 84
>PRK08328 hypothetical protein; Provisional
Probab=92.76 E-value=0.066 Score=52.23 Aligned_cols=54 Identities=22% Similarity=0.420 Sum_probs=41.8
Q ss_pred HHHHcCCCceeccCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEE
Q 012553 293 LAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV 372 (461)
Q Consensus 293 L~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lv 372 (461)
++||..++..|..+. -.+|++.||+++|+|..|..+|+.|+.+ |+ .+|.++
T Consensus 7 ~~ry~Rq~~~~g~~~------------------q~~L~~~~VlIiG~GGlGs~ia~~La~~-----Gv------g~i~lv 57 (231)
T PRK08328 7 LERYDRQIMIFGVEG------------------QEKLKKAKVAVVGVGGLGSPVAYYLAAA-----GV------GRILLI 57 (231)
T ss_pred HHHHhhHHHhcCHHH------------------HHHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEE
Confidence 578876665565421 2467889999999999999999999765 64 689999
Q ss_pred cCC
Q 012553 373 DSK 375 (461)
Q Consensus 373 Ds~ 375 (461)
|.+
T Consensus 58 D~D 60 (231)
T PRK08328 58 DEQ 60 (231)
T ss_pred cCC
Confidence 975
No 85
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=92.42 E-value=1.1 Score=47.29 Aligned_cols=54 Identities=17% Similarity=0.231 Sum_probs=45.6
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcC
Q 012553 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (461)
Q Consensus 309 GTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs 374 (461)
..|=-+++.+++..|-.|..|.+.++.|+|.|..|..+|+.+... |+ ++..+|.
T Consensus 94 aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~l~a~-----G~-------~V~~~dp 147 (378)
T PRK15438 94 AVVEYVFSSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEAL-----GI-------KTLLCDP 147 (378)
T ss_pred HHHHHHHHHHHHHhccCCCCcCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECC
Confidence 455567888998888889999999999999999999999998643 65 6888885
No 86
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=92.36 E-value=0.2 Score=52.11 Aligned_cols=102 Identities=20% Similarity=0.161 Sum_probs=65.4
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccC---Cc-----CCCChhhhhhcc---
Q 012553 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS---RK-----DSLQHFKKPWAH--- 395 (461)
Q Consensus 327 ~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~---R~-----~~L~~~k~~fA~--- 395 (461)
.+|++.||+++|+|..|..||+.|+.+ |+ ++|.++|.+= +..+ |. +++-..|..-+.
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~-----Gv------g~i~lvD~d~-v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l 198 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLAAA-----GV------GTLGIVDHDV-VDRSNLQRQILHTEDRVGQPKVDSAAQRL 198 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCE-ecchhhccccccchhhCCCcHHHHHHHHH
Confidence 367889999999999999999999765 64 6899999862 1111 00 011111211111
Q ss_pred --ccC---------CC--CCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEE
Q 012553 396 --EHE---------PV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQAL 444 (461)
Q Consensus 396 --~~~---------~~--~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~ 444 (461)
-.+ .. .++.+.++. .|++|-++... =+...+..++.....|+|++
T Consensus 199 ~~~np~v~v~~~~~~~~~~~~~~~~~~--~D~Vv~~~d~~--~~r~~ln~~~~~~~ip~i~~ 256 (376)
T PRK08762 199 AALNPDVQVEAVQERVTSDNVEALLQD--VDVVVDGADNF--PTRYLLNDACVKLGKPLVYG 256 (376)
T ss_pred HHHCCCCEEEEEeccCChHHHHHHHhC--CCEEEECCCCH--HHHHHHHHHHHHcCCCEEEE
Confidence 001 01 235556665 89999877643 25667888888888999987
No 87
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=92.27 E-value=0.41 Score=46.30 Aligned_cols=102 Identities=20% Similarity=0.155 Sum_probs=63.5
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCc--------CCCChhhhhhcc---
Q 012553 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK--------DSLQHFKKPWAH--- 395 (461)
Q Consensus 327 ~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~--------~~L~~~k~~fA~--- 395 (461)
.+|++.||+|+|+|+.|..+|+.|+.+ |+ ++|.++|.+= +..+.- +++-..|..-+.
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~-----Gv------g~i~lvD~D~-ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l 84 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAA-----GV------GKLGLVDDDV-VELSNLQRQILHTEADVGQPKAEAAAERL 84 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCCE-EcCcccccccccChhhCCChHHHHHHHHH
Confidence 478899999999999999999999765 64 7999999873 222210 011111211111
Q ss_pred -c-cC---------CC--CCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEE
Q 012553 396 -E-HE---------PV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQAL 444 (461)
Q Consensus 396 -~-~~---------~~--~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~ 444 (461)
. .+ .. .++.+.++. +|++|.+.... -+...+..++.....|+|++
T Consensus 85 ~~~np~~~i~~~~~~i~~~~~~~~~~~--~DvVi~~~d~~--~~r~~l~~~~~~~~ip~i~~ 142 (228)
T cd00757 85 RAINPDVEIEAYNERLDAENAEELIAG--YDLVLDCTDNF--ATRYLINDACVKLGKPLVSG 142 (228)
T ss_pred HHhCCCCEEEEecceeCHHHHHHHHhC--CCEEEEcCCCH--HHHHHHHHHHHHcCCCEEEE
Confidence 0 00 01 134455554 88888775533 35566777777777888886
No 88
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=92.24 E-value=0.24 Score=53.16 Aligned_cols=108 Identities=13% Similarity=0.153 Sum_probs=67.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHh-cCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccc-cCC-----CCCHH
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQ-TKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLL 404 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~-~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~-~~~-----~~~L~ 404 (461)
.||+|+||||+ -+-.|+..+.+. ..+ ....|+|+|-+. +|-+.+...-+.+++. ..+ ..++.
T Consensus 1 ~KI~iIGaGS~---~tp~li~~l~~~~~~l----~~~ei~L~DId~----~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~ 69 (437)
T cd05298 1 FKIVIAGGGST---YTPGIVKSLLDRKEDF----PLRELVLYDIDA----ERQEKVAEAVKILFKENYPEIKFVYTTDPE 69 (437)
T ss_pred CeEEEECCcHH---HHHHHHHHHHhCcccC----CCCEEEEECCCH----HHHHHHHHHHHHHHHhhCCCeEEEEECCHH
Confidence 48999999996 444444444332 233 357899999753 3322122222223222 111 25899
Q ss_pred HhhcccCCcEEE---------------------ecc-----CCCCC--------CCHHHHHHHhcCCCCcEEEEcCCCCc
Q 012553 405 DAVKVIKPTILI---------------------GSS-----GVGRT--------FTKEVIEAMASFNEVVFQALLWLIRK 450 (461)
Q Consensus 405 eaV~~vkptvLI---------------------G~S-----~~~g~--------Ft~evv~~Ma~~~erPIIF~Lsnp~~ 450 (461)
||+++ +|.+| |+- |+||. +-.++++.|.+.+...+++-.|||..
T Consensus 70 eAl~g--ADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~ 147 (437)
T cd05298 70 EAFTD--ADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAA 147 (437)
T ss_pred HHhCC--CCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHH
Confidence 99998 88877 221 33332 23588889999999999999999986
Q ss_pred hh
Q 012553 451 FN 452 (461)
Q Consensus 451 ~~ 452 (461)
.+
T Consensus 148 ~v 149 (437)
T cd05298 148 IV 149 (437)
T ss_pred HH
Confidence 54
No 89
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=92.17 E-value=0.3 Score=49.37 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=38.5
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 316 Agll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
.|++.+++-.+..+++.+++++|||-||-+|+-.|.+. |. ++|+++|+.
T Consensus 112 ~Gf~~~L~~~~~~~~~k~vlilGaGGaarAi~~aL~~~-----g~------~~i~i~nR~ 160 (283)
T PRK14027 112 SGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVTH-----GV------QKLQVADLD 160 (283)
T ss_pred HHHHHHHHhcCcCcCCCeEEEECCcHHHHHHHHHHHHC-----CC------CEEEEEcCC
Confidence 46777777555568889999999999999998877642 53 689999873
No 90
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=92.14 E-value=0.43 Score=47.07 Aligned_cols=104 Identities=14% Similarity=0.179 Sum_probs=65.1
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCc-------CCCChhhhhhcc----
Q 012553 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK-------DSLQHFKKPWAH---- 395 (461)
Q Consensus 327 ~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~-------~~L~~~k~~fA~---- 395 (461)
.+|++.||+++|+|..|..+|+.|+.+ |+ ++|.++|.+=+=..+-. +.+-..|..-|.
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~-----Gv------g~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~ 88 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAA-----GV------GNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALT 88 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHH
Confidence 468889999999999999999999764 64 68999998733211110 001111111110
Q ss_pred c-c---------CCC--CCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEc
Q 012553 396 E-H---------EPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALL 445 (461)
Q Consensus 396 ~-~---------~~~--~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~L 445 (461)
. . ... .++.+.++. .|++|-++... -+..++..++.....|+|++-
T Consensus 89 ~inp~v~i~~~~~~i~~~~~~~~~~~--~DlVvd~~D~~--~~r~~ln~~~~~~~ip~v~~~ 146 (240)
T TIGR02355 89 QINPHIAINPINAKLDDAELAALIAE--HDIVVDCTDNV--EVRNQLNRQCFAAKVPLVSGA 146 (240)
T ss_pred HHCCCcEEEEEeccCCHHHHHHHhhc--CCEEEEcCCCH--HHHHHHHHHHHHcCCCEEEEE
Confidence 0 0 011 135555655 78888776543 456777788877889998864
No 91
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.10 E-value=0.53 Score=48.06 Aligned_cols=83 Identities=19% Similarity=0.306 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChh
Q 012553 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (461)
Q Consensus 311 aaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~ 389 (461)
.-+|-.|++.-++-.|.+++..++|++|.+ ..|.-+|.+|.. .| ..+.+|+++
T Consensus 138 ~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~-----~~-------atVt~chs~-------------- 191 (284)
T PRK14190 138 LPCTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLN-----EN-------ATVTYCHSK-------------- 191 (284)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CC-------CEEEEEeCC--------------
Confidence 456788889999999999999999999985 578888888754 23 256667542
Q ss_pred hhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHH
Q 012553 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (461)
Q Consensus 390 k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~ 431 (461)
..+|.+.++. +|++|...+.++.|++++|+
T Consensus 192 ----------t~~l~~~~~~--ADIvI~AvG~p~~i~~~~ik 221 (284)
T PRK14190 192 ----------TKNLAELTKQ--ADILIVAVGKPKLITADMVK 221 (284)
T ss_pred ----------chhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1358888998 99999999999999999996
No 92
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.03 E-value=0.46 Score=48.58 Aligned_cols=87 Identities=17% Similarity=0.270 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChh
Q 012553 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (461)
Q Consensus 311 aaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~ 389 (461)
.-+|-+|++.=++-.+-+++.+++||+|.+ ..|.-+|.||... |. .+ ...+..|+++.
T Consensus 137 ~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~-----~~-~~--~AtVt~~hs~t------------- 195 (286)
T PRK14184 137 RPCTPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAP-----GK-FA--NATVTVCHSRT------------- 195 (286)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCC-----cc-cC--CCEEEEEeCCc-------------
Confidence 466778899999999999999999999986 5677788777531 10 00 12456666531
Q ss_pred hhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHH
Q 012553 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (461)
Q Consensus 390 k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~ 431 (461)
.+|.+.++. +|++|+..+.++.+++++|+
T Consensus 196 -----------~~l~~~~~~--ADIVI~AvG~p~li~~~~vk 224 (286)
T PRK14184 196 -----------PDLAEECRE--ADFLFVAIGRPRFVTADMVK 224 (286)
T ss_pred -----------hhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 358899998 99999999999999999994
No 93
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=91.77 E-value=0.051 Score=50.10 Aligned_cols=90 Identities=24% Similarity=0.406 Sum_probs=50.8
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC-------------CccccCCcCCCChhhhhhcc
Q 012553 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-------------GLIVSSRKDSLQHFKKPWAH 395 (461)
Q Consensus 329 l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~-------------GLi~~~R~~~L~~~k~~fA~ 395 (461)
+.-.+|||.|+|.+|.|.++++... |. ++...|.. ++.+ ...+.+.. +.|++
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~l-----Ga-------~v~~~d~~~~~~~~~~~~~~~~i~~-~~~~~~~~--~~~~~ 82 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGL-----GA-------EVVVPDERPERLRQLESLGAYFIEV-DYEDHLER--KDFDK 82 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSHHHHHHHHHTTTEESEE-TTTTTTTS--B-CCH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHC-----CC-------EEEeccCCHHHHHhhhcccCceEEE-cccccccc--cccch
Confidence 5668999999999999999988653 53 34444542 1111 00010100 00222
Q ss_pred c----cCC--CCCHHHhhcccCCcEEEecc-----CCCCCCCHHHHHHHhc
Q 012553 396 E----HEP--VNNLLDAVKVIKPTILIGSS-----GVGRTFTKEVIEAMAS 435 (461)
Q Consensus 396 ~----~~~--~~~L~eaV~~vkptvLIG~S-----~~~g~Ft~evv~~Ma~ 435 (461)
. .+. ...|.+.++. .|++|+.. ..+-+||+++++.|.+
T Consensus 83 ~~~~~~~~~~~~~f~~~i~~--~d~vI~~~~~~~~~~P~lvt~~~~~~m~~ 131 (168)
T PF01262_consen 83 ADYYEHPESYESNFAEFIAP--ADIVIGNGLYWGKRAPRLVTEEMVKSMKP 131 (168)
T ss_dssp HHCHHHCCHHHHHHHHHHHH---SEEEEHHHBTTSS---SBEHHHHHTSST
T ss_pred hhhhHHHHHhHHHHHHHHhh--CcEEeeecccCCCCCCEEEEhHHhhccCC
Confidence 1 111 2468888987 89999743 4446999999999974
No 94
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.77 E-value=0.64 Score=47.49 Aligned_cols=85 Identities=18% Similarity=0.201 Sum_probs=68.1
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCCh
Q 012553 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (461)
Q Consensus 310 TaaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~ 388 (461)
=.-+|-+|++.=++-.+.+++.+++||+|.+ ..|.-+|.+|... |. .+.+|+|+ .
T Consensus 136 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~-----~A-------tVti~hs~-------T----- 191 (281)
T PRK14183 136 FVPCTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLNA-----NA-------TVDICHIF-------T----- 191 (281)
T ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHHC-----CC-------EEEEeCCC-------C-----
Confidence 3466788889999999999999999999998 8899999888642 42 45555542 1
Q ss_pred hhhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHH
Q 012553 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEA 432 (461)
Q Consensus 389 ~k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~ 432 (461)
++|.+.++. +|++|-..+.++.++.++|+.
T Consensus 192 ------------~~l~~~~~~--ADIvV~AvGkp~~i~~~~vk~ 221 (281)
T PRK14183 192 ------------KDLKAHTKK--ADIVIVGVGKPNLITEDMVKE 221 (281)
T ss_pred ------------cCHHHHHhh--CCEEEEecCcccccCHHHcCC
Confidence 236778887 999999999999999999984
No 95
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.67 E-value=0.18 Score=50.09 Aligned_cols=32 Identities=38% Similarity=0.576 Sum_probs=26.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
+||.|+|+|..|.+||..+... | -+++++|..
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-----G-------~~V~~~d~~ 33 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-----G-------FQTTLVDIK 33 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-----C-------CcEEEEeCC
Confidence 4799999999999999988653 4 358888864
No 96
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.65 E-value=0.78 Score=47.26 Aligned_cols=113 Identities=19% Similarity=0.086 Sum_probs=71.5
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCc--cccCCcCCCChhhhhhccccCCCCCHHHhhcc
Q 012553 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL--IVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 409 (461)
Q Consensus 333 riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GL--i~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~ 409 (461)
||.|.|| |..|..+|..|+. .|+-.+.-...+.|+|.+.- ..++..-.|.+..-++.+...-..+..+++++
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~-----~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~ 76 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIAS-----GELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKD 76 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHh-----CCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCC
Confidence 7999999 9999999987764 25532223347999998641 11111111333322332211111467888998
Q ss_pred cCCcEEEeccCCC---CC-----------CCHHHHHHHhcCC-CCcEEEEcCCCCchh
Q 012553 410 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFN-EVVFQALLWLIRKFN 452 (461)
Q Consensus 410 vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~-erPIIF~Lsnp~~~~ 452 (461)
.|++|=+.+.+ |- +-+++++.|++++ ..-||+--|||-..+
T Consensus 77 --aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~ 132 (323)
T cd00704 77 --VDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTN 132 (323)
T ss_pred --CCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHH
Confidence 89888555443 31 2367888888994 999999999998765
No 97
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.63 E-value=0.76 Score=47.22 Aligned_cols=105 Identities=18% Similarity=0.196 Sum_probs=70.1
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccccC--CCCCHHHhhcc
Q 012553 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE--PVNNLLDAVKV 409 (461)
Q Consensus 333 riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~--~~~~L~eaV~~ 409 (461)
||.|+|| |..|..+|-.|+. .|+ ...+.|+|.+ + ..+-.-+|.+.. .+.+-.. ...++.+.+++
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~-----~~~-----~~elvLiDi~-~-a~g~alDL~~~~-~~~~i~~~~~~~~~y~~~~d 68 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKL-----NPL-----VSELALYDIV-N-TPGVAADLSHIN-TPAKVTGYLGPEELKKALKG 68 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHh-----CCC-----CcEEEEEecC-c-cceeehHhHhCC-CcceEEEecCCCchHHhcCC
Confidence 8999999 9999999987743 355 3689999998 3 222111243332 1111111 11346788888
Q ss_pred cCCcEEEeccCCC---CC-----------CCHHHHHHHhcCCCCcEEEEcCCCCchh
Q 012553 410 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEVVFQALLWLIRKFN 452 (461)
Q Consensus 410 vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIF~Lsnp~~~~ 452 (461)
.|++|=+++.+ |- .-+++++.+.+++...+|+-.|||-..+
T Consensus 69 --aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~ 123 (310)
T cd01337 69 --ADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNST 123 (310)
T ss_pred --CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhH
Confidence 89888565553 21 3356778888899999999999998765
No 98
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=91.43 E-value=0.44 Score=47.92 Aligned_cols=50 Identities=32% Similarity=0.389 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 315 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 315 LAgll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
..|++.+++..+..+++.+++|+|||-||.+||..+.. .|. ++|+++++.
T Consensus 110 ~~G~~~~l~~~~~~~~~k~vlI~GAGGagrAia~~La~-----~G~------~~V~I~~R~ 159 (289)
T PRK12548 110 GLGFVRNLREHGVDVKGKKLTVIGAGGAATAIQVQCAL-----DGA------KEITIFNIK 159 (289)
T ss_pred HHHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 45677888877777889999999999888877766654 353 579998874
No 99
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.36 E-value=0.71 Score=47.17 Aligned_cols=83 Identities=23% Similarity=0.365 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChh
Q 012553 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (461)
Q Consensus 311 aaV~LAgll~Alk~~g~~l~d~riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~ 389 (461)
.-+|-+|++.=++-.|-+++..+++|+|. |..|.-+|.+|... |. .+.++.++ .
T Consensus 138 ~PcTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~-----ga-------tVtv~~s~-------t------ 192 (284)
T PRK14179 138 IPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDK-----NA-------TVTLTHSR-------T------ 192 (284)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHC-----CC-------EEEEECCC-------C------
Confidence 45677888888999999999999999999 99999999999753 53 34444321 1
Q ss_pred hhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHH
Q 012553 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (461)
Q Consensus 390 k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~ 431 (461)
.+|.++++. +|++|-..+.++.+++++++
T Consensus 193 -----------~~l~~~~~~--ADIVI~avg~~~~v~~~~ik 221 (284)
T PRK14179 193 -----------RNLAEVARK--ADILVVAIGRGHFVTKEFVK 221 (284)
T ss_pred -----------CCHHHHHhh--CCEEEEecCccccCCHHHcc
Confidence 258888988 99999999999999998855
No 100
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=91.26 E-value=0.24 Score=51.25 Aligned_cols=104 Identities=22% Similarity=0.219 Sum_probs=64.5
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccC---Cc-----CCCC--hhhhhhc--
Q 012553 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS---RK-----DSLQ--HFKKPWA-- 394 (461)
Q Consensus 327 ~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~---R~-----~~L~--~~k~~fA-- 394 (461)
.+|++.||+|+|||.-|..+|..|+.+ |+ .+|.++|.+-+ ..+ |. +.+. ..|..-|
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~a-----Gv------g~i~lvD~D~V-e~sNL~RQ~l~~~~dig~g~~Ka~aa~~ 87 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRA-----GV------GKVTIVDRDYV-EWSNLQRQQLYTESDVKNNLPKAVAAKK 87 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCcc-CHHHcCccccccHHHhcCCCcHHHHHHH
Confidence 578899999999999999999998764 64 68999999632 111 10 0010 0111111
Q ss_pred --cc-cC---------C--CCCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcC
Q 012553 395 --HE-HE---------P--VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLW 446 (461)
Q Consensus 395 --~~-~~---------~--~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Ls 446 (461)
+. .+ . ..++.+.++. .|++|-++.-. =+..++...+.....|.|++-+
T Consensus 88 ~l~~inp~v~v~~~~~~~~~~~~~~~~~~--~DlVid~~Dn~--~~r~~ln~~~~~~~iP~i~~~~ 149 (339)
T PRK07688 88 RLEEINSDVRVEAIVQDVTAEELEELVTG--VDLIIDATDNF--ETRFIVNDAAQKYGIPWIYGAC 149 (339)
T ss_pred HHHHHCCCcEEEEEeccCCHHHHHHHHcC--CCEEEEcCCCH--HHHHHHHHHHHHhCCCEEEEee
Confidence 10 00 1 1245566665 78888876532 3566677777777889987543
No 101
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=91.17 E-value=0.52 Score=46.96 Aligned_cols=88 Identities=23% Similarity=0.302 Sum_probs=55.5
Q ss_pred HHHHHHHHHH-hCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhh
Q 012553 315 LAGVVAALKL-IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW 393 (461)
Q Consensus 315 LAgll~Alk~-~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~f 393 (461)
..|++++++- .+..+++.+++|+|||.+|-+++..+.. .|. .+|+++++.. ++ .......+
T Consensus 106 ~~G~~~~l~~~~~~~~~~k~vlVlGaGg~a~ai~~aL~~-----~g~------~~V~v~~R~~----~~---a~~l~~~~ 167 (278)
T PRK00258 106 GIGFVRALEERLGVDLKGKRILILGAGGAARAVILPLLD-----LGV------AEITIVNRTV----ER---AEELAKLF 167 (278)
T ss_pred HHHHHHHHHhccCCCCCCCEEEEEcCcHHHHHHHHHHHH-----cCC------CEEEEEeCCH----HH---HHHHHHHh
Confidence 4567777764 5678999999999999999999888864 253 5799998841 22 11222222
Q ss_pred cccc-CCC-CCHHHhhcccCCcEEEeccCCC
Q 012553 394 AHEH-EPV-NNLLDAVKVIKPTILIGSSGVG 422 (461)
Q Consensus 394 A~~~-~~~-~~L~eaV~~vkptvLIG~S~~~ 422 (461)
.... -.. .++.+++.. +|++|-++..+
T Consensus 168 ~~~~~~~~~~~~~~~~~~--~DivInaTp~g 196 (278)
T PRK00258 168 GALGKAELDLELQEELAD--FDLIINATSAG 196 (278)
T ss_pred hhccceeecccchhcccc--CCEEEECCcCC
Confidence 1110 011 123455554 89999887655
No 102
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.03 E-value=0.9 Score=46.48 Aligned_cols=83 Identities=23% Similarity=0.307 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhh
Q 012553 312 SVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK 390 (461)
Q Consensus 312 aV~LAgll~Alk~~g~~l~d~riv~~GAG-sAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k 390 (461)
-+|-+|++.=++-.+-+++.+++||+|.+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 140 PcTp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------atVt~chs~--------------- 192 (284)
T PRK14177 140 PCTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTE-----MN-------ATVTLCHSK--------------- 192 (284)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC---------------
Confidence 45667788888889999999999999985 578888888754 24 256777653
Q ss_pred hhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHH
Q 012553 391 KPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEA 432 (461)
Q Consensus 391 ~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~ 432 (461)
.++|.+.+++ +|++|...|.++.+|.++|+.
T Consensus 193 ---------T~~l~~~~~~--ADIvIsAvGk~~~i~~~~ik~ 223 (284)
T PRK14177 193 ---------TQNLPSIVRQ--ADIIVGAVGKPEFIKADWISE 223 (284)
T ss_pred ---------CCCHHHHHhh--CCEEEEeCCCcCccCHHHcCC
Confidence 1357788887 999999999999999999984
No 103
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=90.83 E-value=0.43 Score=42.14 Aligned_cols=103 Identities=21% Similarity=0.204 Sum_probs=62.2
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcC-------CCChhhhhhccc----c-
Q 012553 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD-------SLQHFKKPWAHE----H- 397 (461)
Q Consensus 330 ~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~-------~L~~~k~~fA~~----~- 397 (461)
++.||+++|+|+-|.-+|+.|+.. |+ .+|.++|.+=+=..+-.. .+...|..-+++ .
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~-----Gv------~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~n 69 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARS-----GV------GKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEIN 69 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHH-----TT------SEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHS
T ss_pred CCCEEEEECcCHHHHHHHHHHHHh-----CC------CceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhc
Confidence 478999999999999999999875 64 799999987442222111 111122222211 1
Q ss_pred C---------CC--CCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcCC
Q 012553 398 E---------PV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLWL 447 (461)
Q Consensus 398 ~---------~~--~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Lsn 447 (461)
+ .. ..+.+.++. .|++|.++... =.+..+..++.....|+|.+-.+
T Consensus 70 p~~~v~~~~~~~~~~~~~~~~~~--~d~vi~~~d~~--~~~~~l~~~~~~~~~p~i~~~~~ 126 (135)
T PF00899_consen 70 PDVEVEAIPEKIDEENIEELLKD--YDIVIDCVDSL--AARLLLNEICREYGIPFIDAGVN 126 (135)
T ss_dssp TTSEEEEEESHCSHHHHHHHHHT--SSEEEEESSSH--HHHHHHHHHHHHTT-EEEEEEEE
T ss_pred CceeeeeeecccccccccccccC--CCEEEEecCCH--HHHHHHHHHHHHcCCCEEEEEee
Confidence 1 11 235555654 78888877642 23445666777777898887655
No 104
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=90.57 E-value=1.8 Score=44.76 Aligned_cols=110 Identities=23% Similarity=0.193 Sum_probs=67.5
Q ss_pred CceeccCCC---chhHHHHHHHHHHHH------------------HhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhc
Q 012553 300 HLVFNDDIQ---GTASVVLAGVVAALK------------------LIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQT 358 (461)
Q Consensus 300 ~~~FnDDiQ---GTaaV~LAgll~Alk------------------~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~ 358 (461)
|.|+|-.-- ..|=-++|.+|+..| ..|..|.++++.|+|.|..|..+|+.+...
T Consensus 90 i~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~af----- 164 (324)
T COG0111 90 ILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAF----- 164 (324)
T ss_pred CEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHHHHHhC-----
Confidence 455554432 334446788888877 567789999999999999999999998653
Q ss_pred CCChhhccceEEEEcCCCccccCCcCCCChhhhhhccccCCCCCHHHhhcccCCcEEEecc----CCCCCCCHHHHHHHh
Q 012553 359 KAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAMA 434 (461)
Q Consensus 359 Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkptvLIG~S----~~~g~Ft~evv~~Ma 434 (461)
|+ ++..+|.. ..+. ... ........+|.+.++. .|++.-.- ..-|.++++-+..|.
T Consensus 165 gm-------~v~~~d~~----~~~~--~~~-----~~~~~~~~~Ld~lL~~--sDiv~lh~PlT~eT~g~i~~~~~a~MK 224 (324)
T COG0111 165 GM-------KVIGYDPY----SPRE--RAG-----VDGVVGVDSLDELLAE--ADILTLHLPLTPETRGLINAEELAKMK 224 (324)
T ss_pred CC-------eEEEECCC----Cchh--hhc-----cccceecccHHHHHhh--CCEEEEcCCCCcchhcccCHHHHhhCC
Confidence 65 78888872 1110 000 0011123456666665 66665421 122466666666664
No 105
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=90.54 E-value=0.77 Score=45.31 Aligned_cols=105 Identities=14% Similarity=0.150 Sum_probs=67.3
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCc--------CCCChhhhhhcc---
Q 012553 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK--------DSLQHFKKPWAH--- 395 (461)
Q Consensus 327 ~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~--------~~L~~~k~~fA~--- 395 (461)
.+|++.||+|+|+|.-|.-+|+.|+.+ |+ ++|.++|.+ .|..+.- +.+-..|..-|.
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~-----Gv------g~i~lvD~D-~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l 95 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAA-----GV------GTLTLVDFD-TVSLSNLQRQVLHDDATIGQPKVESARAAL 95 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCC-EECcchhhhhhcCChhhCCChHHHHHHHHH
Confidence 478899999999999999999999775 64 699999987 3332210 011112221111
Q ss_pred -c-cCC---------C--CCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcCC
Q 012553 396 -E-HEP---------V--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLWL 447 (461)
Q Consensus 396 -~-~~~---------~--~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Lsn 447 (461)
. .+. . .++.+.++. .|++|.++... -+...+...+.....|+|.+-++
T Consensus 96 ~~lnp~v~i~~~~~~i~~~~~~~~~~~--~DiVi~~~D~~--~~r~~ln~~~~~~~ip~v~~~~~ 156 (245)
T PRK05690 96 ARINPHIAIETINARLDDDELAALIAG--HDLVLDCTDNV--ATRNQLNRACFAAKKPLVSGAAI 156 (245)
T ss_pred HHHCCCCEEEEEeccCCHHHHHHHHhc--CCEEEecCCCH--HHHHHHHHHHHHhCCEEEEeeec
Confidence 0 010 1 134455665 89999887633 34566777777778999987544
No 106
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.52 E-value=0.84 Score=46.85 Aligned_cols=83 Identities=18% Similarity=0.324 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeC-cchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChh
Q 012553 311 ASVVLAGVVAALKLIGGTLAEHRFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (461)
Q Consensus 311 aaV~LAgll~Alk~~g~~l~d~riv~~G-AGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~ 389 (461)
.-+|-.|++.=++-.+.+++.++|+|+| .|..|..+|.+|... |. .+.+++++ ..
T Consensus 138 ~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~-----g~-------tVtv~~~r-------T~----- 193 (296)
T PRK14188 138 VPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAA-----NA-------TVTIAHSR-------TR----- 193 (296)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhC-----CC-------EEEEECCC-------CC-----
Confidence 4566788888889899999999999999 999999999999753 53 56666542 11
Q ss_pred hhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHH
Q 012553 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (461)
Q Consensus 390 k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~ 431 (461)
+|.|+++. +|++|-.-+.+..+++++++
T Consensus 194 ------------~l~e~~~~--ADIVIsavg~~~~v~~~~lk 221 (296)
T PRK14188 194 ------------DLPAVCRR--ADILVAAVGRPEMVKGDWIK 221 (296)
T ss_pred ------------CHHHHHhc--CCEEEEecCChhhcchheec
Confidence 36777876 88888877777777777643
No 107
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.51 E-value=1.1 Score=45.69 Aligned_cols=84 Identities=18% Similarity=0.296 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChh
Q 012553 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (461)
Q Consensus 311 aaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~ 389 (461)
.-+|-+|++.=++-.+.+++.++++++|.+ ..|.-+|.||.. .| -.+.+|+|+
T Consensus 138 ~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~-------AtVt~chs~-------------- 191 (278)
T PRK14172 138 LPCTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLN-----EN-------ATVTICHSK-------------- 191 (278)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEeCCC--------------
Confidence 456788889999999999999999999975 578888888854 24 256777653
Q ss_pred hhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHH
Q 012553 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEA 432 (461)
Q Consensus 390 k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~ 432 (461)
.++|.+.+++ +|++|-..|.++.||+|+|+.
T Consensus 192 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik~ 222 (278)
T PRK14172 192 ----------TKNLKEVCKK--ADILVVAIGRPKFIDEEYVKE 222 (278)
T ss_pred ----------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcCC
Confidence 1257888887 999999999999999999983
No 108
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=90.49 E-value=1.2 Score=41.82 Aligned_cols=84 Identities=18% Similarity=0.317 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChh
Q 012553 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (461)
Q Consensus 311 aaV~LAgll~Alk~~g~~l~d~riv~~GAGs-AgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~ 389 (461)
--+|-.|++.-++..+-+++..+++++|.+. -|.-+|.+|... |. .+.+++++
T Consensus 16 ~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~-----~a-------tVt~~h~~-------------- 69 (160)
T PF02882_consen 16 VPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNK-----GA-------TVTICHSK-------------- 69 (160)
T ss_dssp --HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHT-----T--------EEEEE-TT--------------
T ss_pred cCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhC-----CC-------eEEeccCC--------------
Confidence 3567888899999999999999999999984 888888887652 32 35555553
Q ss_pred hhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHH
Q 012553 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEA 432 (461)
Q Consensus 390 k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~ 432 (461)
.++|.+.++. +|++|-..+.++.++.++|+.
T Consensus 70 ----------T~~l~~~~~~--ADIVVsa~G~~~~i~~~~ik~ 100 (160)
T PF02882_consen 70 ----------TKNLQEITRR--ADIVVSAVGKPNLIKADWIKP 100 (160)
T ss_dssp ----------SSSHHHHHTT--SSEEEE-SSSTT-B-GGGS-T
T ss_pred ----------CCcccceeee--ccEEeeeeccccccccccccC
Confidence 1357777886 999999999999999999874
No 109
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=90.39 E-value=0.59 Score=47.62 Aligned_cols=47 Identities=36% Similarity=0.502 Sum_probs=38.2
Q ss_pred HHHHHHHHhC--CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcC
Q 012553 317 GVVAALKLIG--GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (461)
Q Consensus 317 gll~Alk~~g--~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs 374 (461)
|+..+|+-.+ ...+.+++|++|||-|+.+|+-.|.+. | .++|+++++
T Consensus 110 G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~-----g------~~~i~V~NR 158 (283)
T COG0169 110 GFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEA-----G------AKRITVVNR 158 (283)
T ss_pred HHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHc-----C------CCEEEEEeC
Confidence 5677777655 456689999999999999999888764 5 378999988
No 110
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=90.38 E-value=0.61 Score=47.68 Aligned_cols=99 Identities=17% Similarity=0.168 Sum_probs=59.7
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChh
Q 012553 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (461)
Q Consensus 310 TaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~ 389 (461)
||++ |.+++..+... ...+++|+|+|..|..++..+... .++ ++|+++++. ..| ...+
T Consensus 113 Taa~---~~laa~~la~~--~~~~v~iiGaG~qA~~~~~al~~~----~~i------~~v~V~~R~----~~~---a~~~ 170 (326)
T TIGR02992 113 TAAA---GAVAARHLARE--DSSVVAIFGAGMQARLQLEALTLV----RDI------RSARIWARD----SAK---AEAL 170 (326)
T ss_pred HHHH---HHHHHHHhCCC--CCcEEEEECCCHHHHHHHHHHHHh----CCc------cEEEEECCC----HHH---HHHH
Confidence 4444 34444444322 346899999999999998877543 232 578888772 222 2222
Q ss_pred hhhhccc----cCCCCCHHHhhcccCCcEEEeccCC-CCCCCHHHHHH
Q 012553 390 KKPWAHE----HEPVNNLLDAVKVIKPTILIGSSGV-GRTFTKEVIEA 432 (461)
Q Consensus 390 k~~fA~~----~~~~~~L~eaV~~vkptvLIG~S~~-~g~Ft~evv~~ 432 (461)
...+.+. .....+++++++. .|++|-++.. ...|+.++++.
T Consensus 171 a~~~~~~~g~~v~~~~~~~~av~~--aDiVvtaT~s~~p~i~~~~l~~ 216 (326)
T TIGR02992 171 ALQLSSLLGIDVTAATDPRAAMSG--ADIIVTTTPSETPILHAEWLEP 216 (326)
T ss_pred HHHHHhhcCceEEEeCCHHHHhcc--CCEEEEecCCCCcEecHHHcCC
Confidence 2222211 1123679999986 9999976543 34678777763
No 111
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.33 E-value=2 Score=44.26 Aligned_cols=114 Identities=19% Similarity=0.146 Sum_probs=70.1
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCcc--ccC-CcCCCChhhhhhccccCCCCCHHHhh
Q 012553 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSS-RKDSLQHFKKPWAHEHEPVNNLLDAV 407 (461)
Q Consensus 332 ~riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi--~~~-R~~~L~~~k~~fA~~~~~~~~L~eaV 407 (461)
-||+|.|| |..|..+|..|+.. |+-..+....++++|.+.-. ..+ ..| +.+..-++..+.....++.+++
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~-----~~~~~~~~~el~L~D~~~~~~~~~g~~~D-l~d~~~~~~~~~~~~~~~~~~l 76 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKG-----DVFGPDQPVILHLLDIPPALKALEGVVME-LQDCAFPLLKSVVATTDPEEAF 76 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhC-----cccCCCCCcEEEEEEcCCccccccceeee-hhhccccccCCceecCCHHHHh
Confidence 36999999 99999999987652 43110112379999985421 111 011 2211111211111125788999
Q ss_pred cccCCcEEEeccCCCCC--CC------------HHHHHHHhcCC-CCcEEEEcCCCCchhh
Q 012553 408 KVIKPTILIGSSGVGRT--FT------------KEVIEAMASFN-EVVFQALLWLIRKFNF 453 (461)
Q Consensus 408 ~~vkptvLIG~S~~~g~--Ft------------~evv~~Ma~~~-erPIIF~Lsnp~~~~~ 453 (461)
++ +|++|=+.+.+.. -| +++++.|.+++ ..-||+-.|||-..+-
T Consensus 77 ~~--aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t 135 (325)
T cd01336 77 KD--VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNA 135 (325)
T ss_pred CC--CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHH
Confidence 97 9999866555421 23 66778888886 6899999999987664
No 112
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.31 E-value=0.89 Score=46.69 Aligned_cols=86 Identities=16% Similarity=0.277 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhh
Q 012553 312 SVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK 390 (461)
Q Consensus 312 aV~LAgll~Alk~~g~~l~d~riv~~GAG-sAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k 390 (461)
-+|.+|++.=++..+.+++.+++||+|.+ -.|.-+|.||.+.+.+ .| ..+..+.++
T Consensus 140 PcTp~ail~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~-~~-------atVt~~hs~--------------- 196 (295)
T PRK14174 140 SCTPYGILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKE-SN-------CTVTICHSA--------------- 196 (295)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhcccc-CC-------CEEEEEeCC---------------
Confidence 45667888889999999999999999986 5688888887642211 11 245555542
Q ss_pred hhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHH
Q 012553 391 KPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (461)
Q Consensus 391 ~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~ 431 (461)
..+|.+.++. +|++|+..+.++.|++++|+
T Consensus 197 ---------t~~l~~~~~~--ADIvI~Avg~~~li~~~~vk 226 (295)
T PRK14174 197 ---------TKDIPSYTRQ--ADILIAAIGKARFITADMVK 226 (295)
T ss_pred ---------chhHHHHHHh--CCEEEEecCccCccCHHHcC
Confidence 1348889988 99999999999999999994
No 113
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=90.20 E-value=1.1 Score=46.04 Aligned_cols=85 Identities=15% Similarity=0.230 Sum_probs=67.5
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCCh
Q 012553 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (461)
Q Consensus 310 TaaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~ 388 (461)
=.-+|-+|++.=++-.|-+++.+++||+|-+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 146 ~~PcTp~avi~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~-----~~-------ATVtvchs~------------- 200 (299)
T PLN02516 146 FLPCTPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLK-----AD-------ATVTVVHSR------------- 200 (299)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEeCCC-------------
Confidence 3456777888889999999999999999986 567778877754 24 257777663
Q ss_pred hhhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHH
Q 012553 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEA 432 (461)
Q Consensus 389 ~k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~ 432 (461)
.++|.+.++. +|++|-..|.++.|+.|+|+.
T Consensus 201 -----------T~nl~~~~~~--ADIvv~AvGk~~~i~~~~vk~ 231 (299)
T PLN02516 201 -----------TPDPESIVRE--ADIVIAAAGQAMMIKGDWIKP 231 (299)
T ss_pred -----------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcCC
Confidence 1358888887 999999999999999999984
No 114
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.03 E-value=1.2 Score=45.69 Aligned_cols=86 Identities=19% Similarity=0.348 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChh
Q 012553 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (461)
Q Consensus 311 aaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~ 389 (461)
.-+|-.|++.-++-.|-+++.+++|++|.+ ..|.-+|.+|... ..| ..+.+|.|+
T Consensus 138 ~PcTp~av~~ll~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~---~~~-------atVtvchs~-------------- 193 (284)
T PRK14193 138 LPCTPRGIVHLLRRYDVELAGAHVVVIGRGVTVGRPIGLLLTRR---SEN-------ATVTLCHTG-------------- 193 (284)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHhhc---cCC-------CEEEEeCCC--------------
Confidence 466788889999999999999999999985 5788888887531 012 245666553
Q ss_pred hhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHH
Q 012553 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEA 432 (461)
Q Consensus 390 k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~ 432 (461)
.++|.+.++. +|++|-..|.++.+++++|+.
T Consensus 194 ----------T~~l~~~~k~--ADIvV~AvGkp~~i~~~~ik~ 224 (284)
T PRK14193 194 ----------TRDLAAHTRR--ADIIVAAAGVAHLVTADMVKP 224 (284)
T ss_pred ----------CCCHHHHHHh--CCEEEEecCCcCccCHHHcCC
Confidence 1358888988 999999999999999999984
No 115
>PRK07574 formate dehydrogenase; Provisional
Probab=90.01 E-value=3.9 Score=43.39 Aligned_cols=97 Identities=13% Similarity=0.083 Sum_probs=59.0
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccccCCCCCHHH
Q 012553 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 405 (461)
Q Consensus 326 g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e 405 (461)
+..|.+++|.|+|.|..|..+|+.+... |+ +++.+|+...-. + . .+.+ ......+|.|
T Consensus 187 ~~~L~gktVGIvG~G~IG~~vA~~l~~f-----G~-------~V~~~dr~~~~~----~-~---~~~~--g~~~~~~l~e 244 (385)
T PRK07574 187 SYDLEGMTVGIVGAGRIGLAVLRRLKPF-----DV-------KLHYTDRHRLPE----E-V---EQEL--GLTYHVSFDS 244 (385)
T ss_pred ceecCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEECCCCCch----h-h---Hhhc--CceecCCHHH
Confidence 3458899999999999999999988643 54 688888753200 0 0 0011 0011246778
Q ss_pred hhcccCCcEEEeccC----CCCCCCHHHHHHHhcCCCCcEEEEcCCCC
Q 012553 406 AVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEVVFQALLWLIR 449 (461)
Q Consensus 406 aV~~vkptvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIF~Lsnp~ 449 (461)
+++. .|+++=.-- .-++|+++++..|.+ ..++.=.|--.
T Consensus 245 ll~~--aDvV~l~lPlt~~T~~li~~~~l~~mk~---ga~lIN~aRG~ 287 (385)
T PRK07574 245 LVSV--CDVVTIHCPLHPETEHLFDADVLSRMKR---GSYLVNTARGK 287 (385)
T ss_pred Hhhc--CCEEEEcCCCCHHHHHHhCHHHHhcCCC---CcEEEECCCCc
Confidence 7776 777763221 124677777777764 44555444333
No 116
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.01 E-value=1.2 Score=45.59 Aligned_cols=86 Identities=19% Similarity=0.298 Sum_probs=68.4
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCC
Q 012553 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (461)
Q Consensus 309 GTaaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~ 387 (461)
+=.-+|-+|++.=++..+.+++..++||+|.+ -.|.-+|.+|.. .|. .+.+|+|+.
T Consensus 137 ~~~PcTp~av~~lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~A-------TVtichs~T----------- 193 (288)
T PRK14171 137 GFIPCTALGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLK-----ENC-------SVTICHSKT----------- 193 (288)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCCC-----------
Confidence 34567888899999999999999999999975 578888888754 242 456666531
Q ss_pred hhhhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHH
Q 012553 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEA 432 (461)
Q Consensus 388 ~~k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~ 432 (461)
.+|.+.++. +|++|-..|.++.+++++|+.
T Consensus 194 -------------~~L~~~~~~--ADIvV~AvGkp~~i~~~~vk~ 223 (288)
T PRK14171 194 -------------HNLSSITSK--ADIVVAAIGSPLKLTAEYFNP 223 (288)
T ss_pred -------------CCHHHHHhh--CCEEEEccCCCCccCHHHcCC
Confidence 348888887 999999999999999999984
No 117
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.00 E-value=1.3 Score=45.69 Aligned_cols=90 Identities=20% Similarity=0.258 Sum_probs=67.9
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCC
Q 012553 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (461)
Q Consensus 309 GTaaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~ 387 (461)
+-.-+|-+|++.=++-.|.+++.++++|+|.+ ..|.-+|.+|.. .|+. ....+.+|.|+
T Consensus 139 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~---~~atVtv~hs~------------ 198 (297)
T PRK14168 139 KFLPCTPAGIQEMLVRSGVETSGAEVVVVGRSNIVGKPIANMMTQ-----KGPG---ANATVTIVHTR------------ 198 (297)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcccHHHHHHHHh-----cccC---CCCEEEEecCC------------
Confidence 33466778888888999999999999999985 567778877753 2221 01245566553
Q ss_pred hhhhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHH
Q 012553 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEA 432 (461)
Q Consensus 388 ~~k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~ 432 (461)
.++|.+.++. +|++|-..|.++.+++++|+.
T Consensus 199 ------------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik~ 229 (297)
T PRK14168 199 ------------SKNLARHCQR--ADILIVAAGVPNLVKPEWIKP 229 (297)
T ss_pred ------------CcCHHHHHhh--CCEEEEecCCcCccCHHHcCC
Confidence 1358888987 999999999999999999984
No 118
>PRK15076 alpha-galactosidase; Provisional
Probab=89.82 E-value=0.73 Score=49.32 Aligned_cols=110 Identities=15% Similarity=0.106 Sum_probs=64.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCCh-hhhhhccccC-----CCCCHHH
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH-FKKPWAHEHE-----PVNNLLD 405 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~-~k~~fA~~~~-----~~~~L~e 405 (461)
.||.|+|||+.|.+.+ ++..+....++ +...++|+|.+- +|.+.... .+...+.... ...++.+
T Consensus 2 ~KIaIIGaGsvg~~~~--~~~~i~~~~~l----~~~evvLvDid~----er~~~~~~l~~~~~~~~~~~~~i~~ttD~~e 71 (431)
T PRK15076 2 PKITFIGAGSTVFTKN--LLGDILSVPAL----RDAEIALMDIDP----ERLEESEIVARKLAESLGASAKITATTDRRE 71 (431)
T ss_pred cEEEEECCCHHHhHHH--HHHHHhhCccC----CCCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeEEEEECCHHH
Confidence 5899999999865443 32222211233 345899999742 21110000 0111111111 1357889
Q ss_pred hhcccCCcEEEeccCCCCC-------------------------------------CCHHHHHHHhcCCCCcEEEEcCCC
Q 012553 406 AVKVIKPTILIGSSGVGRT-------------------------------------FTKEVIEAMASFNEVVFQALLWLI 448 (461)
Q Consensus 406 aV~~vkptvLIG~S~~~g~-------------------------------------Ft~evv~~Ma~~~erPIIF~Lsnp 448 (461)
++++ +|++|=..+++|. .-.++++.|.+++...+|+-.|||
T Consensus 72 al~d--ADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP 149 (431)
T PRK15076 72 ALQG--ADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNP 149 (431)
T ss_pred HhCC--CCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCCh
Confidence 9988 8888755544421 124778888899999999999999
Q ss_pred Cchhh
Q 012553 449 RKFNF 453 (461)
Q Consensus 449 ~~~~~ 453 (461)
...+-
T Consensus 150 ~divt 154 (431)
T PRK15076 150 MAMNT 154 (431)
T ss_pred HHHHH
Confidence 86653
No 119
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.82 E-value=1.4 Score=45.41 Aligned_cols=84 Identities=19% Similarity=0.224 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChh
Q 012553 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (461)
Q Consensus 311 aaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~ 389 (461)
.-+|-+|++.-++..+.+++.+++|++|.+ -.|.-+|.+|.. .| ..+.+|+|+-
T Consensus 140 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------aTVt~chs~T------------- 194 (294)
T PRK14187 140 IPCTPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLG-----EN-------CTVTTVHSAT------------- 194 (294)
T ss_pred cCcCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhh-----CC-------CEEEEeCCCC-------------
Confidence 456788889999999999999999999986 567888887753 23 2566776631
Q ss_pred hhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHH
Q 012553 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEA 432 (461)
Q Consensus 390 k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~ 432 (461)
++|.+.++. +|++|-..|.++.++.++|+.
T Consensus 195 -----------~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik~ 224 (294)
T PRK14187 195 -----------RDLADYCSK--ADILVAAVGIPNFVKYSWIKK 224 (294)
T ss_pred -----------CCHHHHHhh--CCEEEEccCCcCccCHHHcCC
Confidence 347788887 999999999999999999983
No 120
>PLN02306 hydroxypyruvate reductase
Probab=89.65 E-value=2.1 Score=45.36 Aligned_cols=120 Identities=18% Similarity=0.199 Sum_probs=71.6
Q ss_pred cCCCceeccCC---CchhHHHHHHHHHHHHHh---------------------CCCcccceEEEeCcchHHHHHHHHHHH
Q 012553 297 GTTHLVFNDDI---QGTASVVLAGVVAALKLI---------------------GGTLAEHRFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 297 r~~~~~FnDDi---QGTaaV~LAgll~Alk~~---------------------g~~l~d~riv~~GAGsAgiGiA~ll~~ 352 (461)
+..|.+.|--- ..+|=-+++-+|+..|-. |..|.++++.|+|.|..|..+|+++..
T Consensus 107 ~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~ 186 (386)
T PLN02306 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186 (386)
T ss_pred HCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEECCCHHHHHHHHHHHh
Confidence 35677777532 223444566666665421 346889999999999999999999865
Q ss_pred HHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhcc--------c--cCCCCCHHHhhcccCCcEEEec----
Q 012553 353 EISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH--------E--HEPVNNLLDAVKVIKPTILIGS---- 418 (461)
Q Consensus 353 ~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~--------~--~~~~~~L~eaV~~vkptvLIG~---- 418 (461)
+| |+ +++.+|+..- . .+..+...+.. . .....+|.|+++. .|+++-.
T Consensus 187 ~f----Gm-------~V~~~d~~~~---~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~--sDiV~lh~Plt 247 (386)
T PLN02306 187 GF----KM-------NLIYYDLYQS---T---RLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLRE--ADVISLHPVLD 247 (386)
T ss_pred cC----CC-------EEEEECCCCc---h---hhhhhhhhhcccccccccccccccccCCHHHHHhh--CCEEEEeCCCC
Confidence 53 54 6888887421 0 01100001100 0 0112468888877 7887762
Q ss_pred cCCCCCCCHHHHHHHhc
Q 012553 419 SGVGRTFTKEVIEAMAS 435 (461)
Q Consensus 419 S~~~g~Ft~evv~~Ma~ 435 (461)
....|.|+++.++.|.+
T Consensus 248 ~~T~~lin~~~l~~MK~ 264 (386)
T PLN02306 248 KTTYHLINKERLALMKK 264 (386)
T ss_pred hhhhhhcCHHHHHhCCC
Confidence 12235788888888864
No 121
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.63 E-value=1.8 Score=43.60 Aligned_cols=33 Identities=21% Similarity=0.365 Sum_probs=26.5
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 331 d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
..||.|+|+|..|.++|..+..+ |. ++++.|+.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~-----G~-------~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASAN-----GH-------RVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----CC-------EEEEEeCC
Confidence 45899999999999999999764 53 56777764
No 122
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.58 E-value=1.4 Score=45.12 Aligned_cols=85 Identities=20% Similarity=0.378 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCCh
Q 012553 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (461)
Q Consensus 310 TaaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~ 388 (461)
=.-+|-+|++.=++-.|-+++.+++||+|.+ ..|.-+|.+|.. .| ..+.+|+|+
T Consensus 136 ~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~-------atVtichs~------------- 190 (284)
T PRK14170 136 FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLN-----EN-------ATVTIAHSR------------- 190 (284)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC-------------
Confidence 3466778888888999999999999999986 567788877753 23 246666552
Q ss_pred hhhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHH
Q 012553 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEA 432 (461)
Q Consensus 389 ~k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~ 432 (461)
..+|.+.++. +|++|-..|.++.|++++|+.
T Consensus 191 -----------T~~l~~~~~~--ADIvI~AvG~~~~i~~~~vk~ 221 (284)
T PRK14170 191 -----------TKDLPQVAKE--ADILVVATGLAKFVKKDYIKP 221 (284)
T ss_pred -----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcCC
Confidence 1347888887 999999999999999999984
No 123
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=89.54 E-value=2.1 Score=44.02 Aligned_cols=104 Identities=21% Similarity=0.260 Sum_probs=68.1
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhcccc--CCCCCHHHhhcc
Q 012553 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKV 409 (461)
Q Consensus 333 riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~--~~~~~L~eaV~~ 409 (461)
||.|+|| |..|..+|-.|+. .|+ ...+.|+|.+. ..+-.-+|.+.. ...+-. ....++.+++++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~~--a~g~a~DL~~~~-~~~~i~~~~~~~~~~~~~~d 67 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKL-----QPY-----VSELSLYDIAG--AAGVAADLSHIP-TAASVKGFSGEEGLENALKG 67 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHh-----CCC-----CcEEEEecCCC--CcEEEchhhcCC-cCceEEEecCCCchHHHcCC
Confidence 6899999 9999999998754 254 36899999876 222111243322 101101 011246788988
Q ss_pred cCCcEEEeccCCCCC--------------CCHHHHHHHhcCCCCcEEEEcCCCCch
Q 012553 410 IKPTILIGSSGVGRT--------------FTKEVIEAMASFNEVVFQALLWLIRKF 451 (461)
Q Consensus 410 vkptvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIF~Lsnp~~~ 451 (461)
.|++|=+.+.+.. .=+++.+.+.+++...||+-.|||-..
T Consensus 68 --aDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv 121 (312)
T TIGR01772 68 --ADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNS 121 (312)
T ss_pred --CCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhh
Confidence 8988855554321 225677788889999999999999974
No 124
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=89.53 E-value=0.98 Score=43.24 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=19.9
Q ss_pred ccceEEEeCcchHHHHHHHHHHH
Q 012553 330 AEHRFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 330 ~d~riv~~GAGsAgiGiA~ll~~ 352 (461)
++.||.|+|+|..|.++|..+..
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~ 25 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLK 25 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHh
Confidence 35789999999999999988864
No 125
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.47 E-value=1.4 Score=44.97 Aligned_cols=86 Identities=16% Similarity=0.243 Sum_probs=68.3
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCC
Q 012553 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (461)
Q Consensus 309 GTaaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~ 387 (461)
+=.-+|-+|++.=++-.|-+++.+++|++|.+ ..|--+|.+|.. .| ..+.+|+|+ .
T Consensus 135 ~~~PcTp~avi~lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~-------atVt~chs~-------T---- 191 (282)
T PRK14166 135 GFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLN-----AG-------ATVSVCHIK-------T---- 191 (282)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC-------C----
Confidence 44567888899999999999999999999986 568888888753 23 246666653 1
Q ss_pred hhhhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHH
Q 012553 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEA 432 (461)
Q Consensus 388 ~~k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~ 432 (461)
++|.+.++. +|++|-..|.++.||+++|+.
T Consensus 192 -------------~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk~ 221 (282)
T PRK14166 192 -------------KDLSLYTRQ--ADLIIVAAGCVNLLRSDMVKE 221 (282)
T ss_pred -------------CCHHHHHhh--CCEEEEcCCCcCccCHHHcCC
Confidence 348888887 999999999999999999983
No 126
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=89.44 E-value=0.87 Score=48.40 Aligned_cols=109 Identities=15% Similarity=0.146 Sum_probs=63.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhcccc------CCCCCHHH
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH------EPVNNLLD 405 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~------~~~~~L~e 405 (461)
.||.|+|||+.|.+.+- +..+..... .+..+++++|.+- ++.+.....-+.++... ....++.+
T Consensus 1 ~KIaIIGaGs~G~a~a~--~~~i~~~~~----~~g~eV~L~Did~----e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~e 70 (423)
T cd05297 1 IKIAFIGAGSVVFTKNL--VGDLLKTPE----LSGSTIALMDIDE----ERLETVEILAKKIVEELGAPLKIEATTDRRE 70 (423)
T ss_pred CeEEEECCChHHhHHHH--HHHHhcCCC----CCCCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeEEEEeCCHHH
Confidence 37999999999888653 111111001 1335899999742 21111111111111111 11357899
Q ss_pred hhcccCCcEEEeccCCC---------------CCC---------------------CHHHHHHHhcCCCCcEEEEcCCCC
Q 012553 406 AVKVIKPTILIGSSGVG---------------RTF---------------------TKEVIEAMASFNEVVFQALLWLIR 449 (461)
Q Consensus 406 aV~~vkptvLIG~S~~~---------------g~F---------------------t~evv~~Ma~~~erPIIF~Lsnp~ 449 (461)
++++ +|++|=.-..+ |+| -.++.+.|.+++.+.+++=.+||-
T Consensus 71 al~~--AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv 148 (423)
T cd05297 71 ALDG--ADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPM 148 (423)
T ss_pred HhcC--CCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChH
Confidence 9997 89887443321 111 126777777788899999999998
Q ss_pred chh
Q 012553 450 KFN 452 (461)
Q Consensus 450 ~~~ 452 (461)
-.+
T Consensus 149 ~i~ 151 (423)
T cd05297 149 AEL 151 (423)
T ss_pred HHH
Confidence 766
No 127
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=89.39 E-value=0.69 Score=46.44 Aligned_cols=100 Identities=17% Similarity=0.291 Sum_probs=61.9
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcC----CCChhhhhhcccc---CCCCCHHHh
Q 012553 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD----SLQHFKKPWAHEH---EPVNNLLDA 406 (461)
Q Consensus 334 iv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~----~L~~~k~~fA~~~---~~~~~L~ea 406 (461)
|.|+|||..|.++|..++. .|+ + .++++|.+ .++.. .+.+.. .+.... ....+. ++
T Consensus 1 I~IIGaG~vG~~ia~~la~-----~~l----~--eV~L~Di~----e~~~~g~~~dl~~~~-~~~~~~~~I~~t~d~-~~ 63 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL-----KEL----G--DVVLLDIV----EGLPQGKALDISQAA-PILGSDTKVTGTNDY-ED 63 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----CCC----c--EEEEEeCC----CcHHHHHHHHHHHhh-hhcCCCeEEEEcCCH-HH
Confidence 5799999999999987754 254 2 79999985 11110 011110 000000 011344 45
Q ss_pred hcccCCcEEEeccCCC---C-----------CCCHHHHHHHhcCCCCcEEEEcCCCCchh
Q 012553 407 VKVIKPTILIGSSGVG---R-----------TFTKEVIEAMASFNEVVFQALLWLIRKFN 452 (461)
Q Consensus 407 V~~vkptvLIG~S~~~---g-----------~Ft~evv~~Ma~~~erPIIF~Lsnp~~~~ 452 (461)
++. +|++|=+.+.+ | .+-+++++.|.+++...+|+-.|||..++
T Consensus 64 l~d--ADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~ 121 (300)
T cd01339 64 IAG--SDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVM 121 (300)
T ss_pred hCC--CCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHH
Confidence 776 89988433322 1 12357888999999999999999999765
No 128
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=89.32 E-value=0.98 Score=47.41 Aligned_cols=102 Identities=20% Similarity=0.180 Sum_probs=66.6
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCc--------CCCChhhhhhccc--
Q 012553 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK--------DSLQHFKKPWAHE-- 396 (461)
Q Consensus 327 ~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~--------~~L~~~k~~fA~~-- 396 (461)
++|++.||+|+|+|..|..+|+.|+.+ |+ .+|.++|.+=+ ..+.- +.+-..|..-+..
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La~~-----Gv------g~i~ivD~D~v-e~sNL~RQ~l~~~~diG~~Ka~~~~~~l 104 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLASA-----GV------GTITLIDDDTV-DVSNIHRQILFGASDVGRPKVEVAAERL 104 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEeCCEE-ccccccccccCChhHCCCHHHHHHHHHH
Confidence 678899999999999999999999765 64 68999998733 21110 0111122221110
Q ss_pred ---cCC---------C--CCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEE
Q 012553 397 ---HEP---------V--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQAL 444 (461)
Q Consensus 397 ---~~~---------~--~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~ 444 (461)
.+. . .++.+.+++ .|++|.++... =+.-+|..++.....|.|++
T Consensus 105 ~~~np~v~i~~~~~~i~~~~~~~~~~~--~DlVid~~Dn~--~~r~~in~~~~~~~iP~v~~ 162 (370)
T PRK05600 105 KEIQPDIRVNALRERLTAENAVELLNG--VDLVLDGSDSF--ATKFLVADAAEITGTPLVWG 162 (370)
T ss_pred HHHCCCCeeEEeeeecCHHHHHHHHhC--CCEEEECCCCH--HHHHHHHHHHHHcCCCEEEE
Confidence 011 1 245667776 89998877632 35667788888788998865
No 129
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=88.81 E-value=11 Score=40.54 Aligned_cols=168 Identities=22% Similarity=0.224 Sum_probs=107.0
Q ss_pred CCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCcc--cHHHHHHHHcC-----CCcee----------ccCCCchhHHH
Q 012553 252 RATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANH--NAFELLAKYGT-----THLVF----------NDDIQGTASVV 314 (461)
Q Consensus 252 R~~g~~Y~~~idefv~av~~~fGp~~lIq~EDf~~~--~af~iL~ryr~-----~~~~F----------nDDiQGTaaV~ 314 (461)
..+-.|-.+|...|++++.+.-||+.-|-=+|++.. .---+.+.|+. ...|| .+----||-=+
T Consensus 111 ~~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~dey~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~Gv 190 (411)
T COG0334 111 GLSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDEYSKIVGNSAPGVFTGKPLELGGSLGRSEATGYGV 190 (411)
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHhhhhhcCCCCcceecCCcccccCCCCCCcccceeh
Confidence 356677888999999999999999999999999852 22235566642 12222 12222244323
Q ss_pred HHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhh--
Q 012553 315 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP-- 392 (461)
Q Consensus 315 LAgll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~-- 392 (461)
.-+.-.|++..|.+|+..||.|-|-|.+|.-.|+.+.+. | .+=+-+-|++|-|++. +.|+..+..
T Consensus 191 ~~~~~~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~-----G------Akvva~sds~g~i~~~--~Gld~~~l~~~ 257 (411)
T COG0334 191 FYAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLHEL-----G------AKVVAVSDSKGGIYDE--DGLDVEALLEL 257 (411)
T ss_pred HHHHHHHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHc-----C------CEEEEEEcCCCceecC--CCCCHHHHHHH
Confidence 333347888889889999999999999999999988653 5 3567778999988876 345533222
Q ss_pred ---hccc-----cCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhc
Q 012553 393 ---WAHE-----HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMAS 435 (461)
Q Consensus 393 ---fA~~-----~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~ 435 (461)
+.+- .+...+ |.+-.+..||||=+.. ++.+|++-.+.+.+
T Consensus 258 ~~~~~~v~~~~ga~~i~~--~e~~~~~cDIl~PcA~-~n~I~~~na~~l~a 305 (411)
T COG0334 258 KERRGSVAEYAGAEYITN--EELLEVDCDILIPCAL-ENVITEDNADQLKA 305 (411)
T ss_pred hhhhhhHHhhcCceEccc--cccccccCcEEccccc-ccccchhhHHHhhh
Confidence 1110 011111 2333345677775555 33677766666654
No 130
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=88.76 E-value=1.1 Score=46.57 Aligned_cols=103 Identities=17% Similarity=0.142 Sum_probs=66.1
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCc--------CCCChhhhhhcc---
Q 012553 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK--------DSLQHFKKPWAH--- 395 (461)
Q Consensus 327 ~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~--------~~L~~~k~~fA~--- 395 (461)
.+|++.||+|+|+|..|..+|+.|+.+ |+ ++|.++|.+= |..+.- +.+-..|..-|.
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~-----Gv------g~i~lvD~D~-ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l 91 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGA-----GV------GHITIIDDDT-VDLSNLHRQVIHSTAGVGQPKAESAREAM 91 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCE-EcccccccCcccChhHCCChHHHHHHHHH
Confidence 568899999999999999999998764 65 6899999873 222110 001111211111
Q ss_pred -cc-CC---------C--CCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEc
Q 012553 396 -EH-EP---------V--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALL 445 (461)
Q Consensus 396 -~~-~~---------~--~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~L 445 (461)
.. +. . .+..+.++. .|++|-++.. .=+..++..++.....|.|++-
T Consensus 92 ~~~np~v~v~~~~~~i~~~~~~~~~~~--~DvVvd~~d~--~~~r~~~n~~c~~~~ip~v~~~ 150 (355)
T PRK05597 92 LALNPDVKVTVSVRRLTWSNALDELRD--ADVILDGSDN--FDTRHLASWAAARLGIPHVWAS 150 (355)
T ss_pred HHHCCCcEEEEEEeecCHHHHHHHHhC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEE
Confidence 00 10 1 234566665 8888877652 3456678888888889999864
No 131
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.70 E-value=1 Score=46.52 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=30.4
Q ss_pred HhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcCCCCchh
Q 012553 405 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLWLIRKFN 452 (461)
Q Consensus 405 eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Lsnp~~~~ 452 (461)
++-+..+|+++|..|+.+ ....++-+. .++-+|=|+.=..||--++
T Consensus 104 ~l~~~~~~~aIlaSnTS~-l~~s~la~~-~~~p~R~~g~HffnP~~~~ 149 (321)
T PRK07066 104 RISRAAKPDAIIASSTSG-LLPTDFYAR-ATHPERCVVGHPFNPVYLL 149 (321)
T ss_pred HHHHhCCCCeEEEECCCc-cCHHHHHHh-cCCcccEEEEecCCccccC
Confidence 444566899999988864 433333333 3455666888889997654
No 132
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=88.59 E-value=1.7 Score=45.74 Aligned_cols=23 Identities=17% Similarity=0.447 Sum_probs=20.7
Q ss_pred ccceEEEeCcchHHHHHHHHHHH
Q 012553 330 AEHRFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 330 ~d~riv~~GAGsAgiGiA~ll~~ 352 (461)
...||.|+|||+-|+++|..+..
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~ 32 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGE 32 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHh
Confidence 45799999999999999999875
No 133
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=88.57 E-value=2.3 Score=37.46 Aligned_cols=35 Identities=34% Similarity=0.366 Sum_probs=26.9
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCC
Q 012553 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (461)
Q Consensus 332 ~riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~G 376 (461)
.||+++|+ |-.|..|++.+... .|+ +=...+|++.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~----~~~------~lv~~v~~~~ 36 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES----PGF------ELVGAVDRKP 36 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS----TTE------EEEEEEETTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhc----CCc------EEEEEEecCC
Confidence 38999999 99999999998762 232 3466788876
No 134
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=88.53 E-value=0.53 Score=45.16 Aligned_cols=38 Identities=26% Similarity=0.310 Sum_probs=33.2
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 327 ~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
.+|++.||+|+|+|..|..||..++.+ |+ +++.++|.+
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 54 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARA-----GI------GKLILVDFD 54 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 468899999999999999999999764 64 689999987
No 135
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=88.39 E-value=0.42 Score=48.07 Aligned_cols=32 Identities=25% Similarity=0.302 Sum_probs=25.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
.+|.|+|+|..|.++|..+... |. +++++|+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~-----G~-------~V~v~d~~ 34 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARA-----GH-------EVRLWDAD 34 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHC-----CC-------eeEEEeCC
Confidence 3799999999999999988763 53 57778764
No 136
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=88.35 E-value=1.1 Score=42.96 Aligned_cols=96 Identities=14% Similarity=0.058 Sum_probs=59.0
Q ss_pred eEEEeC-cchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhc---cc-c----CCCCCH
Q 012553 333 RFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA---HE-H----EPVNNL 403 (461)
Q Consensus 333 riv~~G-AGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA---~~-~----~~~~~L 403 (461)
||.|+| +|..|.++|..+.+. | .+++++|+. .+ .+......+. .. . -...+.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~-----G-------~~V~v~~r~----~~---~~~~l~~~~~~~~~~~g~~~~~~~~~~ 62 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKA-----G-------NKIIIGSRD----LE---KAEEAAAKALEELGHGGSDIKVTGADN 62 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhC-----C-------CEEEEEEcC----HH---HHHHHHHHHHhhccccCCCceEEEeCh
Confidence 799997 899999999998653 4 467777653 11 1211111111 00 0 011356
Q ss_pred HHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcCCCCch
Q 012553 404 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLWLIRKF 451 (461)
Q Consensus 404 ~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Lsnp~~~ 451 (461)
.++++. +|++| ++... ...+++++.++..-...+|+.++||-..
T Consensus 63 ~ea~~~--aDvVi-lavp~-~~~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 63 AEAAKR--ADVVI-LAVPW-DHVLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred HHHHhc--CCEEE-EECCH-HHHHHHHHHHHHhccCCEEEEeccCcee
Confidence 788876 78777 44434 3457788888654344789999999664
No 137
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.34 E-value=1.3 Score=45.29 Aligned_cols=106 Identities=15% Similarity=0.164 Sum_probs=67.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhcccc--CCCCCHHHhhcc
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKV 409 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~--~~~~~L~eaV~~ 409 (461)
.||.|+|||..|..+|-.|+. .|+ ...|.|+|.+-=...+-.-.|.+.. +|.... ....+.++ +++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~-----~~~-----~~el~LiD~~~~~~~g~a~Dl~~~~-~~~~~~~v~~~~dy~~-~~~ 71 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILA-----KGL-----ADELVLVDVVEDKLKGEAMDLQHGS-AFLKNPKIEADKDYSV-TAN 71 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCccHHHHHHHHHHHhh-ccCCCCEEEECCCHHH-hCC
Confidence 499999999999999987754 254 4689999974211111000122222 232211 11134554 776
Q ss_pred cCCcEEEeccCCC---CCCC------------HHHHHHHhcCCCCcEEEEcCCCCchh
Q 012553 410 IKPTILIGSSGVG---RTFT------------KEVIEAMASFNEVVFQALLWLIRKFN 452 (461)
Q Consensus 410 vkptvLIG~S~~~---g~Ft------------~evv~~Ma~~~erPIIF~Lsnp~~~~ 452 (461)
+|++|=+.+.+ | -| +++++.+.+++..-+|+-.|||...+
T Consensus 72 --adivvitaG~~~k~g-~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~ 126 (312)
T cd05293 72 --SKVVIVTAGARQNEG-ESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIM 126 (312)
T ss_pred --CCEEEECCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHH
Confidence 89987555442 2 23 36778888999999999999999865
No 138
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=88.29 E-value=1.2 Score=45.39 Aligned_cols=107 Identities=16% Similarity=0.138 Sum_probs=64.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhcccc---CCCCCHHHhhc
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDAVK 408 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~---~~~~~L~eaV~ 408 (461)
.||.|+|+|..|.++|-.++.. |+ + +++++|..--+.+++.-.+.+ ...+.... ....++.+ ++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~-----g~----~--~VvlvDi~~~l~~g~a~d~~~-~~~~~~~~~~i~~t~d~~~-~~ 68 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK-----EL----A--DLVLLDVVEGIPQGKALDMYE-ASPVGGFDTKVTGTNNYAD-TA 68 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc-----CC----C--eEEEEeCCCChhHHHHHhhhh-hhhccCCCcEEEecCCHHH-hC
Confidence 4899999999999999987642 54 2 599999832221111000100 00000000 11246766 66
Q ss_pred ccCCcEEEeccCCC---C-----------CCCHHHHHHHhcCCCCcEEEEcCCCCchhh
Q 012553 409 VIKPTILIGSSGVG---R-----------TFTKEVIEAMASFNEVVFQALLWLIRKFNF 453 (461)
Q Consensus 409 ~vkptvLIG~S~~~---g-----------~Ft~evv~~Ma~~~erPIIF~Lsnp~~~~~ 453 (461)
. .|++|=+.+.+ | .+=+++++.|.+++...+|+-.|||...+-
T Consensus 69 ~--aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t 125 (305)
T TIGR01763 69 N--SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMT 125 (305)
T ss_pred C--CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHH
Confidence 5 89887544432 1 122456677888899999999999988764
No 139
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.18 E-value=2.1 Score=43.97 Aligned_cols=88 Identities=18% Similarity=0.254 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChh
Q 012553 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (461)
Q Consensus 311 aaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~ 389 (461)
.-+|-+|++.=++-.+.+++.+++||+|.+ -.|.-+|.||.. .|.+. .-.+.+|.|+
T Consensus 137 ~PcTp~av~~lL~~~~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~~~~---~aTVtvchs~-------------- 194 (293)
T PRK14185 137 VSATPNGILELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQ-----KAYPG---DCTVTVCHSR-------------- 194 (293)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHc-----CCCCC---CCEEEEecCC--------------
Confidence 356778888888999999999999999986 567888877753 23210 0134455443
Q ss_pred hhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHH
Q 012553 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEA 432 (461)
Q Consensus 390 k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~ 432 (461)
.++|.+.+++ +|++|-..|.++.+++|+|+.
T Consensus 195 ----------T~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk~ 225 (293)
T PRK14185 195 ----------SKNLKKECLE--ADIIIAALGQPEFVKADMVKE 225 (293)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcCC
Confidence 1358888887 999999999999999999983
No 140
>PRK08374 homoserine dehydrogenase; Provisional
Probab=88.07 E-value=3.1 Score=43.09 Aligned_cols=84 Identities=18% Similarity=0.257 Sum_probs=53.7
Q ss_pred ceEEEeCcchHHHHHHHHHHH---HHHHhcCCChhhccceEEEEcCCCccccCCcCCCCh-----hhhhhcccc------
Q 012553 332 HRFLFLGAGEAGTGIAELIAL---EISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH-----FKKPWAHEH------ 397 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~---~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~-----~k~~fA~~~------ 397 (461)
.+|.++|.|..|.+++++|.+ .+.++.|+. -+=+-++|++|-+...+. ++. +++.+....
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~----l~VvaV~ds~~~~~~~~G--id~~~l~~~~~~~~~~~~~~~~~ 76 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVE----LKVVSITDTSGTIWLPED--IDLREAKEVKENFGKLSNWGNDY 76 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCC----EEEEEEEeCCccccCCCC--CChHHHHHhhhccCchhhccccc
Confidence 589999999999999999976 233334532 122446799988876553 322 222222100
Q ss_pred C-CCCCHHHhhcccCCcEEEeccCC
Q 012553 398 E-PVNNLLDAVKVIKPTILIGSSGV 421 (461)
Q Consensus 398 ~-~~~~L~eaV~~vkptvLIG~S~~ 421 (461)
. ...++.|.++...+||+|-+++.
T Consensus 77 ~~~~~~~~ell~~~~~DVvVd~t~~ 101 (336)
T PRK08374 77 EVYNFSPEEIVEEIDADIVVDVTND 101 (336)
T ss_pred cccCCCHHHHHhcCCCCEEEECCCc
Confidence 0 01268888877789999998864
No 141
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=88.06 E-value=1.6 Score=42.80 Aligned_cols=99 Identities=13% Similarity=0.110 Sum_probs=50.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccC-CcCCCChhhhhhccccCCCCCHHHhhcccC
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS-RKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~-R~~~L~~~k~~fA~~~~~~~~L~eaV~~vk 411 (461)
||.|+|||+.|..+|..+..+ | .+++++|+++=-... +...+.-....+........++.++ + +
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~-----g-------~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~--~ 66 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA-----G-------HDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-G--P 66 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-C--C
Confidence 799999999999999988653 4 368888874211000 0000100000000000112334443 3 3
Q ss_pred CcEEEeccCCCCCCCHHHHHHHhcCC-CCcEEEEcCCC
Q 012553 412 PTILIGSSGVGRTFTKEVIEAMASFN-EVVFQALLWLI 448 (461)
Q Consensus 412 ptvLIG~S~~~g~Ft~evv~~Ma~~~-erPIIF~Lsnp 448 (461)
+|++| ++... .-++++++.+++.. +.-+|+.+.|.
T Consensus 67 ~d~vi-la~k~-~~~~~~~~~l~~~l~~~~~iv~~~nG 102 (304)
T PRK06522 67 QDLVI-LAVKA-YQLPAALPSLAPLLGPDTPVLFLQNG 102 (304)
T ss_pred CCEEE-Eeccc-ccHHHHHHHHhhhcCCCCEEEEecCC
Confidence 67666 33322 24677888777643 23355566664
No 142
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=88.05 E-value=0.74 Score=49.65 Aligned_cols=74 Identities=18% Similarity=0.152 Sum_probs=56.7
Q ss_pred eeeecCCcccHHHHHHHHcC-CCc--eeccCCCchhHHHHHHHHHHHHHhCC--------CcccceEEEeCcchHHHHHH
Q 012553 279 IQFEDFANHNAFELLAKYGT-THL--VFNDDIQGTASVVLAGVVAALKLIGG--------TLAEHRFLFLGAGEAGTGIA 347 (461)
Q Consensus 279 Iq~EDf~~~~af~iL~ryr~-~~~--~FnDDiQGTaaV~LAgll~Alk~~g~--------~l~d~riv~~GAGsAgiGiA 347 (461)
|.+|=+....-.++.++|.- ..| ++||+....|....+-++.+++.... .-.+-.+||+|||+||++.|
T Consensus 148 i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGgGpaGl~aA 227 (517)
T PRK15317 148 ITHTMIDGALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTGAAARAAEELNAKDPYDVLVVGGGPAGAAAA 227 (517)
T ss_pred ceEEEEEchhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhccccccchhhcccCCCCCEEEECCCHHHHHHH
Confidence 66777777788889999973 455 45777778888888888888875321 23456899999999999999
Q ss_pred HHHHH
Q 012553 348 ELIAL 352 (461)
Q Consensus 348 ~ll~~ 352 (461)
..+..
T Consensus 228 ~~la~ 232 (517)
T PRK15317 228 IYAAR 232 (517)
T ss_pred HHHHH
Confidence 98864
No 143
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=88.01 E-value=0.84 Score=45.32 Aligned_cols=99 Identities=14% Similarity=0.149 Sum_probs=52.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccC-CcCCCCh--hh-hhhccccCCCCCHHHhhc
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS-RKDSLQH--FK-KPWAHEHEPVNNLLDAVK 408 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~-R~~~L~~--~k-~~fA~~~~~~~~L~eaV~ 408 (461)
||.|+|+|..|..+|..+... | .+++++|+..-..+. +...... .. ...........++.++++
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-----g-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-----G-------HDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALA 70 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHh
Confidence 799999999999999998753 4 257777774211000 0000000 00 000000011245667766
Q ss_pred ccCCcEEEeccCCCCCCCHHHHHHHhcC-CCCcEEEEcCC
Q 012553 409 VIKPTILIGSSGVGRTFTKEVIEAMASF-NEVVFQALLWL 447 (461)
Q Consensus 409 ~vkptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIF~Lsn 447 (461)
. +|++|= +... ...+++++.+.++ .+..+|..++|
T Consensus 71 ~--~D~vi~-~v~~-~~~~~v~~~l~~~~~~~~~vi~~~n 106 (325)
T PRK00094 71 D--ADLILV-AVPS-QALREVLKQLKPLLPPDAPIVWATK 106 (325)
T ss_pred C--CCEEEE-eCCH-HHHHHHHHHHHhhcCCCCEEEEEee
Confidence 5 676662 2222 3567777776654 33456676665
No 144
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=87.99 E-value=0.77 Score=49.54 Aligned_cols=86 Identities=16% Similarity=0.114 Sum_probs=60.2
Q ss_pred HHHHHHHHhcCCCeeeeeecCCcccHHHHHHHHcC-CCc--eeccCCCchhHHHHHHHHHHHHHh--------CCCcccc
Q 012553 264 EFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGT-THL--VFNDDIQGTASVVLAGVVAALKLI--------GGTLAEH 332 (461)
Q Consensus 264 efv~av~~~fGp~~lIq~EDf~~~~af~iL~ryr~-~~~--~FnDDiQGTaaV~LAgll~Alk~~--------g~~l~d~ 332 (461)
+.+..+.... |+ |..|=+....-.++.++|.- ..| ++||+..+.+....+-+++.++.. ...-.+.
T Consensus 137 ~~~~~~a~~~-p~--i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 213 (515)
T TIGR03140 137 QALNQMALLN-PN--ISHTMIDGALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEETAGVEAASALEQLDPY 213 (515)
T ss_pred HHHHHHHHhC-CC--ceEEEEEchhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhccCcccchhccccCCC
Confidence 3334344444 43 55555777788889999973 455 358877788888888888777643 1223457
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 012553 333 RFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~ 352 (461)
++||+|||+||+..|..+..
T Consensus 214 dVvIIGgGpAGl~AA~~la~ 233 (515)
T TIGR03140 214 DVLVVGGGPAGAAAAIYAAR 233 (515)
T ss_pred CEEEECCCHHHHHHHHHHHH
Confidence 89999999999999988765
No 145
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=87.96 E-value=1.2 Score=43.78 Aligned_cols=99 Identities=11% Similarity=0.015 Sum_probs=54.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCcccc-CCcCCCCh--hhhhhccccCCCCCHHHhhcc
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVS-SRKDSLQH--FKKPWAHEHEPVNNLLDAVKV 409 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~-~R~~~L~~--~k~~fA~~~~~~~~L~eaV~~ 409 (461)
||.|+|+|+.|..+|..+..+ | .+++++++ +--.+ -+...+.- .....-.......+..++++.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-----g-------~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-----G-------RDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGP 68 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-----C-------CceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCC
Confidence 799999999999999988653 4 36778877 21000 00000100 000000000112355665554
Q ss_pred cCCcEEEeccCCCCCCCHHHHHHHhcC-CCCcEEEEcCCC
Q 012553 410 IKPTILIGSSGVGRTFTKEVIEAMASF-NEVVFQALLWLI 448 (461)
Q Consensus 410 vkptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIF~Lsnp 448 (461)
+|++|=+... ...+++++.++++ .+..+|+.+.|.
T Consensus 69 --~d~vilavk~--~~~~~~~~~l~~~~~~~~~ii~~~nG 104 (305)
T PRK12921 69 --FDLVILAVKA--YQLDAAIPDLKPLVGEDTVIIPLQNG 104 (305)
T ss_pred --CCEEEEEecc--cCHHHHHHHHHhhcCCCCEEEEeeCC
Confidence 7766633332 3568888888763 345677778886
No 146
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=87.79 E-value=1.2 Score=44.93 Aligned_cols=48 Identities=10% Similarity=0.063 Sum_probs=36.5
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 316 Agll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
.|++.+++..|.+. +.+++++|||-|+.+|+-.|.+ .|. ++|+++++.
T Consensus 108 ~Gf~~~L~~~~~~~-~~~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 155 (272)
T PRK12550 108 IAIAKLLASYQVPP-DLVVALRGSGGMAKAVAAALRD-----AGF------TDGTIVARN 155 (272)
T ss_pred HHHHHHHHhcCCCC-CCeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 46677777666653 4699999999999999887764 253 579999874
No 147
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=87.73 E-value=0.65 Score=48.58 Aligned_cols=86 Identities=21% Similarity=0.391 Sum_probs=60.8
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccc----cCCCCCHH
Q 012553 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLL 404 (461)
Q Consensus 329 l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~----~~~~~~L~ 404 (461)
...-+++|+|.|-+|+--|++.. |+. -++.+.|.+ .+| |......|..+ ......++
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~-------glg-----A~Vtild~n----~~r---l~~ldd~f~~rv~~~~st~~~ie 226 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAI-------GLG-----ADVTILDLN----IDR---LRQLDDLFGGRVHTLYSTPSNIE 226 (371)
T ss_pred CCCccEEEECCccccchHHHHHh-------ccC-----CeeEEEecC----HHH---HhhhhHhhCceeEEEEcCHHHHH
Confidence 56789999999999999998764 442 367777763 233 43334444432 12234699
Q ss_pred HhhcccCCcEEEec-----cCCCCCCCHHHHHHHhc
Q 012553 405 DAVKVIKPTILIGS-----SGVGRTFTKEVIEAMAS 435 (461)
Q Consensus 405 eaV~~vkptvLIG~-----S~~~g~Ft~evv~~Ma~ 435 (461)
|+|++ +|++||. +..|.+.|+|+++.|.+
T Consensus 227 e~v~~--aDlvIgaVLIpgakaPkLvt~e~vk~Mkp 260 (371)
T COG0686 227 EAVKK--ADLVIGAVLIPGAKAPKLVTREMVKQMKP 260 (371)
T ss_pred HHhhh--ccEEEEEEEecCCCCceehhHHHHHhcCC
Confidence 99987 9999986 45566899999999976
No 148
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=87.68 E-value=1.1 Score=45.06 Aligned_cols=93 Identities=15% Similarity=0.114 Sum_probs=58.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccccCCCCCHHHhhccc-C
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI-K 411 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~v-k 411 (461)
+|-|+|.|..|.++|..+... | -++.+.|+. .. ..+..++. ......++.|+++.. +
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~-----g-------~~V~~~dr~----~~---~~~~l~~~---g~~~~~s~~~~~~~~~~ 59 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR-----G-------HDCVGYDHD----QD---AVKAMKED---RTTGVANLRELSQRLSA 59 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC-----C-------CEEEEEECC----HH---HHHHHHHc---CCcccCCHHHHHhhcCC
Confidence 689999999999999988653 4 256666652 11 12222211 111224566655432 4
Q ss_pred CcEEEeccCCCCCCCHHHHHHHhcCC-CCcEEEEcCCCC
Q 012553 412 PTILIGSSGVGRTFTKEVIEAMASFN-EVVFQALLWLIR 449 (461)
Q Consensus 412 ptvLIG~S~~~g~Ft~evv~~Ma~~~-erPIIF~Lsnp~ 449 (461)
+|++|= +.+.+ ..+++++.++++- +..||+-+||..
T Consensus 60 ~dvIi~-~vp~~-~~~~v~~~l~~~l~~g~ivid~st~~ 96 (298)
T TIGR00872 60 PRVVWV-MVPHG-IVDAVLEELAPTLEKGDIVIDGGNSY 96 (298)
T ss_pred CCEEEE-EcCch-HHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 888874 44454 8889998887653 567888888864
No 149
>PRK07411 hypothetical protein; Validated
Probab=87.61 E-value=1.4 Score=46.48 Aligned_cols=102 Identities=17% Similarity=0.125 Sum_probs=65.8
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCc--------CCCChhhhhhccc--
Q 012553 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK--------DSLQHFKKPWAHE-- 396 (461)
Q Consensus 327 ~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~--------~~L~~~k~~fA~~-- 396 (461)
.+|++.||+|+|+|.-|.-+|+.|+.+ |+ .+|.++|.+= |..+.- +++-..|..-|.+
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~-----Gv------g~l~lvD~D~-ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l 101 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAA-----GI------GRIGIVDFDV-VDSSNLQRQVIHGTSWVGKPKIESAKNRI 101 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCCE-ecccccCcCcccChHHCCCcHHHHHHHHH
Confidence 578899999999999999999999875 64 6999999872 222210 0111112111110
Q ss_pred ---cC---------CC--CCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEE
Q 012553 397 ---HE---------PV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQAL 444 (461)
Q Consensus 397 ---~~---------~~--~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~ 444 (461)
.+ .. .+..+.++. .|++|-+... .=+..+|..++.....|.|++
T Consensus 102 ~~~np~v~v~~~~~~~~~~~~~~~~~~--~D~Vvd~~d~--~~~r~~ln~~~~~~~~p~v~~ 159 (390)
T PRK07411 102 LEINPYCQVDLYETRLSSENALDILAP--YDVVVDGTDN--FPTRYLVNDACVLLNKPNVYG 159 (390)
T ss_pred HHHCCCCeEEEEecccCHHhHHHHHhC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEE
Confidence 01 11 134455665 7888877653 236777888888788998865
No 150
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.58 E-value=1.5 Score=44.94 Aligned_cols=105 Identities=13% Similarity=0.220 Sum_probs=66.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhcc--ccC-CCCCHHHhhcc
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH--EHE-PVNNLLDAVKV 409 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~--~~~-~~~~L~eaV~~ 409 (461)
||.|+|||..|..+|-.|+. .|+ .+.+.|+|.+-=..++-.-+|.+.. .|.. ... ..++ .+.+++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~~~~a~g~a~DL~~~~-~~~~~~~~~i~~~~-y~~~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALA-----LGL-----FSEIVLIDVNEGVAEGEALDFHHAT-ALTYSTNTKIRAGD-YDDCAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCcchhhHHHHHHHhhh-ccCCCCCEEEEECC-HHHhCC
Confidence 68999999999999998764 255 3589999973111111000132211 2211 100 0123 466777
Q ss_pred cCCcEEEeccCCC---CCCC--------------HHHHHHHhcCCCCcEEEEcCCCCchh
Q 012553 410 IKPTILIGSSGVG---RTFT--------------KEVIEAMASFNEVVFQALLWLIRKFN 452 (461)
Q Consensus 410 vkptvLIG~S~~~---g~Ft--------------~evv~~Ma~~~erPIIF~Lsnp~~~~ 452 (461)
.|++|=+.+.+ | -| +++++.+.+++...|++-.|||-..+
T Consensus 69 --aDivvitaG~~~kpg-~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvDv~ 125 (307)
T cd05290 69 --ADIIVITAGPSIDPG-NTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIA 125 (307)
T ss_pred --CCEEEECCCCCCCCC-CCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHHHH
Confidence 89988665543 3 23 57888889999999999999997765
No 151
>PRK06436 glycerate dehydrogenase; Provisional
Probab=87.55 E-value=6.2 Score=40.41 Aligned_cols=38 Identities=21% Similarity=0.209 Sum_probs=30.9
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 326 g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
+..|.++++.|+|-|..|..+|+++. ++ |+ +++.+|+.
T Consensus 117 ~~~L~gktvgIiG~G~IG~~vA~~l~-af----G~-------~V~~~~r~ 154 (303)
T PRK06436 117 TKLLYNKSLGILGYGGIGRRVALLAK-AF----GM-------NIYAYTRS 154 (303)
T ss_pred CCCCCCCEEEEECcCHHHHHHHHHHH-HC----CC-------EEEEECCC
Confidence 45799999999999999999998664 32 64 68888875
No 152
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.38 E-value=2.5 Score=43.30 Aligned_cols=85 Identities=22% Similarity=0.312 Sum_probs=67.1
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCCh
Q 012553 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (461)
Q Consensus 310 TaaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~ 388 (461)
=.-+|-.|++.=++-.|.+++.+++||+|.+ ..|.-+|.||.. .|. .+.+|.|+
T Consensus 135 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~a-------tVtichs~------------- 189 (282)
T PRK14169 135 VVASTPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVN-----HDA-------TVTIAHSK------------- 189 (282)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEECCC-------------
Confidence 3467778888889999999999999999975 578888888754 242 45566543
Q ss_pred hhhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHH
Q 012553 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEA 432 (461)
Q Consensus 389 ~k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~ 432 (461)
..+|.+.++. +|++|-..|.++.|+.++|+.
T Consensus 190 -----------T~~l~~~~~~--ADIvI~AvG~p~~i~~~~vk~ 220 (282)
T PRK14169 190 -----------TRNLKQLTKE--ADILVVAVGVPHFIGADAVKP 220 (282)
T ss_pred -----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcCC
Confidence 1248888887 999999999999999999984
No 153
>PRK13243 glyoxylate reductase; Reviewed
Probab=87.30 E-value=5.8 Score=40.90 Aligned_cols=38 Identities=16% Similarity=0.148 Sum_probs=31.2
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 326 g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
|..|.+++|.|+|.|..|..+|+.+... |+ +++.+|+.
T Consensus 145 g~~L~gktvgIiG~G~IG~~vA~~l~~~-----G~-------~V~~~d~~ 182 (333)
T PRK13243 145 GYDVYGKTIGIIGFGRIGQAVARRAKGF-----GM-------RILYYSRT 182 (333)
T ss_pred ccCCCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCC
Confidence 4568999999999999999999998643 54 57888874
No 154
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=87.12 E-value=5.8 Score=40.53 Aligned_cols=67 Identities=21% Similarity=0.276 Sum_probs=47.0
Q ss_pred CCCceeccCC---CchhHHHHHHHHHHHHHh------------------------CCCcccceEEEeCcchHHHHHHHHH
Q 012553 298 TTHLVFNDDI---QGTASVVLAGVVAALKLI------------------------GGTLAEHRFLFLGAGEAGTGIAELI 350 (461)
Q Consensus 298 ~~~~~FnDDi---QGTaaV~LAgll~Alk~~------------------------g~~l~d~riv~~GAGsAgiGiA~ll 350 (461)
..|.|.|--- ..+|=-+++-+|+..|-. +..|.++++.|+|-|..|..+|+++
T Consensus 85 ~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~ 164 (311)
T PRK08410 85 KGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIA 164 (311)
T ss_pred CCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHHH
Confidence 4566666321 235555677777766532 2468999999999999999999988
Q ss_pred HHHHHHhcCCChhhccceEEEEcCCC
Q 012553 351 ALEISKQTKAPVEETRKKICLVDSKG 376 (461)
Q Consensus 351 ~~~m~~~~Gls~eeA~~~i~lvDs~G 376 (461)
. ++ |+ +|+.+|+.+
T Consensus 165 ~-~f----gm-------~V~~~d~~~ 178 (311)
T PRK08410 165 Q-AF----GA-------KVVYYSTSG 178 (311)
T ss_pred h-hc----CC-------EEEEECCCc
Confidence 5 33 64 688888853
No 155
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.08 E-value=3.4 Score=42.57 Aligned_cols=114 Identities=14% Similarity=-0.002 Sum_probs=69.2
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCcc--ccCCcCCCChhhhhhccccCCCCCHHHhhc
Q 012553 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 408 (461)
Q Consensus 332 ~riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi--~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~ 408 (461)
.||.|+|| |..|..+|-.|+.. |+-.-.-...+.|+|.+.-. ..+-.-.|.+..-++.....-..+..+.++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~-----~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~ 77 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASG-----EMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFK 77 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc-----cccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhC
Confidence 38999999 99999988877642 54110111379999985422 111111133322233221111135567788
Q ss_pred ccCCcEEEeccCCC---CCCC------------HHHHHHHhcCC-CCcEEEEcCCCCchhh
Q 012553 409 VIKPTILIGSSGVG---RTFT------------KEVIEAMASFN-EVVFQALLWLIRKFNF 453 (461)
Q Consensus 409 ~vkptvLIG~S~~~---g~Ft------------~evv~~Ma~~~-erPIIF~Lsnp~~~~~ 453 (461)
+ .|++|=+.+.+ | -| +++.+.+.+++ ..-||+-.|||-..+-
T Consensus 78 d--aDivvitaG~~~k~g-~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t 135 (322)
T cd01338 78 D--ADWALLVGAKPRGPG-MERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNA 135 (322)
T ss_pred C--CCEEEEeCCCCCCCC-CcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHH
Confidence 7 89999555543 3 23 46777888888 4999999999987653
No 156
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=86.92 E-value=0.72 Score=44.61 Aligned_cols=103 Identities=19% Similarity=0.140 Sum_probs=61.4
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCC---c----CCCChhhhhhccc---
Q 012553 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSR---K----DSLQHFKKPWAHE--- 396 (461)
Q Consensus 327 ~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R---~----~~L~~~k~~fA~~--- 396 (461)
.+|++.+|+++|+|..|..||+.|+.+ |+ .+|+++|.+= |..+. . +++-..|..-+..
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D~-ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~ 91 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARS-----GV------GNLKLVDFDV-VEPSNLNRQQYFISQIGMPKVEALKENLL 91 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCCE-eccccccccEeehhhCCChHHHHHHHHHH
Confidence 467899999999999999999999764 64 6899999872 21111 0 0111112111110
Q ss_pred --cCC---------C--CCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCC-CCcEEEEc
Q 012553 397 --HEP---------V--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN-EVVFQALL 445 (461)
Q Consensus 397 --~~~---------~--~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~-erPIIF~L 445 (461)
.+. . .++.+.++. .|++|.++-.. -++..+-.++... ..|+|++-
T Consensus 92 ~lnp~v~v~~~~~~i~~~~~~~~~~~--~DvVI~a~D~~--~~r~~l~~~~~~~~~~p~I~~~ 150 (212)
T PRK08644 92 EINPFVEIEAHNEKIDEDNIEELFKD--CDIVVEAFDNA--ETKAMLVETVLEHPGKKLVAAS 150 (212)
T ss_pred HHCCCCEEEEEeeecCHHHHHHHHcC--CCEEEECCCCH--HHHHHHHHHHHHhCCCCEEEee
Confidence 010 1 134455655 89999875422 2444444555545 79999983
No 157
>PRK08291 ectoine utilization protein EutC; Validated
Probab=86.88 E-value=1.3 Score=45.29 Aligned_cols=94 Identities=18% Similarity=0.216 Sum_probs=56.0
Q ss_pred HHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccc
Q 012553 317 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE 396 (461)
Q Consensus 317 gll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~ 396 (461)
|.+++..+.. -..++++|+|||..|..++..+... .+ .+++.++++. .. +...+...+.+.
T Consensus 120 ~~~a~~~la~--~~~~~v~IiGaG~~a~~~~~al~~~----~~------~~~V~v~~R~----~~---~a~~l~~~~~~~ 180 (330)
T PRK08291 120 GAVAARHLAR--EDASRAAVIGAGEQARLQLEALTLV----RP------IREVRVWARD----AA---KAEAYAADLRAE 180 (330)
T ss_pred HHHHHHHhCC--CCCCEEEEECCCHHHHHHHHHHHhc----CC------CCEEEEEcCC----HH---HHHHHHHHHhhc
Confidence 4444444432 2347999999999998888766542 13 2578888762 11 122333322211
Q ss_pred ----cCCCCCHHHhhcccCCcEEEeccCC-CCCCCHHHHH
Q 012553 397 ----HEPVNNLLDAVKVIKPTILIGSSGV-GRTFTKEVIE 431 (461)
Q Consensus 397 ----~~~~~~L~eaV~~vkptvLIG~S~~-~g~Ft~evv~ 431 (461)
.....++.++++. +|++|-++.. ...|+.++++
T Consensus 181 ~g~~v~~~~d~~~al~~--aDiVi~aT~s~~p~i~~~~l~ 218 (330)
T PRK08291 181 LGIPVTVARDVHEAVAG--ADIIVTTTPSEEPILKAEWLH 218 (330)
T ss_pred cCceEEEeCCHHHHHcc--CCEEEEeeCCCCcEecHHHcC
Confidence 1123678999986 8999876433 3467777765
No 158
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=86.84 E-value=3.3 Score=42.82 Aligned_cols=113 Identities=16% Similarity=0.046 Sum_probs=69.2
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCc---cccCCcCCCChhhhhhccccCCCCCHHHhh
Q 012553 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL---IVSSRKDSLQHFKKPWAHEHEPVNNLLDAV 407 (461)
Q Consensus 332 ~riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GL---i~~~R~~~L~~~k~~fA~~~~~~~~L~eaV 407 (461)
-||.|+|| |..|..+|-.|+. .|+-.-.-...|.|+|.+.- ..-...| |.+..-++.....-..+..+.+
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~-----~~~~~~~~~~el~L~Di~~~~~~a~g~a~D-l~~~~~~~~~~~~i~~~~~~~~ 77 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIAS-----GELFGKDQPVVLHLLDIPPAMKALEGVAME-LEDCAFPLLAGVVATTDPEEAF 77 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHh-----CCcccCCCccEEEEEecCCcccccchHHHH-HhhccccccCCcEEecChHHHh
Confidence 48999998 9999999988764 25411011127999998631 1111111 3322212222111113566778
Q ss_pred cccCCcEEEeccCCC---CC-----------CCHHHHHHHhcCCC-CcEEEEcCCCCchh
Q 012553 408 KVIKPTILIGSSGVG---RT-----------FTKEVIEAMASFNE-VVFQALLWLIRKFN 452 (461)
Q Consensus 408 ~~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~e-rPIIF~Lsnp~~~~ 452 (461)
++ .|++|=+.+.+ |- +=+++++.+++++. .-||+--|||-..+
T Consensus 78 ~d--aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~ 135 (323)
T TIGR01759 78 KD--VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTN 135 (323)
T ss_pred CC--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHH
Confidence 87 89998555543 21 22467788888987 99999999998765
No 159
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.76 E-value=2.7 Score=43.02 Aligned_cols=86 Identities=19% Similarity=0.235 Sum_probs=67.0
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCC
Q 012553 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (461)
Q Consensus 309 GTaaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~ 387 (461)
+=.-+|-.|++.=++-.|.++++.++||+|.+ ..|.-+|.+|.. .|. .+.+|+|+
T Consensus 136 ~~~PcTp~aii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~A-------TVt~chs~------------ 191 (282)
T PRK14180 136 CLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLN-----AKA-------TVTTCHRF------------ 191 (282)
T ss_pred CcCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEEcCC------------
Confidence 33567888899999999999999999999986 578888888753 242 45666553
Q ss_pred hhhhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHH
Q 012553 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEA 432 (461)
Q Consensus 388 ~~k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~ 432 (461)
.++|.+.++. +|++|-..|.++.|++++|+.
T Consensus 192 ------------T~dl~~~~k~--ADIvIsAvGkp~~i~~~~vk~ 222 (282)
T PRK14180 192 ------------TTDLKSHTTK--ADILIVAVGKPNFITADMVKE 222 (282)
T ss_pred ------------CCCHHHHhhh--cCEEEEccCCcCcCCHHHcCC
Confidence 1246777777 999999999999999999883
No 160
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.75 E-value=2.7 Score=43.13 Aligned_cols=84 Identities=25% Similarity=0.343 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChh
Q 012553 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (461)
Q Consensus 311 aaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~ 389 (461)
.-+|-.|++.=++-.|-+++..++|++|.+ ..|.-+|.+|.. .| ..+.+|.|+
T Consensus 135 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------aTVtichs~-------------- 188 (287)
T PRK14173 135 EPCTPAGVVRLLKHYGIPLAGKEVVVVGRSNIVGKPLAALLLR-----ED-------ATVTLAHSK-------------- 188 (287)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CC-------CEEEEeCCC--------------
Confidence 456778888889999999999999999975 678888888754 23 246666542
Q ss_pred hhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHH
Q 012553 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEA 432 (461)
Q Consensus 390 k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~ 432 (461)
..+|.+.+++ +|++|-..|.++.+++++|+.
T Consensus 189 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~vk~ 219 (287)
T PRK14173 189 ----------TQDLPAVTRR--ADVLVVAVGRPHLITPEMVRP 219 (287)
T ss_pred ----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcCC
Confidence 1248888887 999999999999999999974
No 161
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.68 E-value=1.7 Score=43.44 Aligned_cols=31 Identities=35% Similarity=0.662 Sum_probs=25.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcC
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs 374 (461)
++|.|+|+|..|.+||..+... |. +++++|.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~-----g~-------~V~~~d~ 35 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK-----GL-------QVVLIDV 35 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEEC
Confidence 5799999999999999988653 53 6888885
No 162
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=86.50 E-value=1.1 Score=40.73 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=25.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCC
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~G 376 (461)
+|||+|+|.||+..|..+.. .| .+++++|+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~-----~~-------~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR-----PG-------AKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH-----TT-------SEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhc-----CC-------CeEEEEeccc
Confidence 68999999999999999873 23 4788887644
No 163
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.31 E-value=3.1 Score=42.57 Aligned_cols=84 Identities=18% Similarity=0.232 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChh
Q 012553 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (461)
Q Consensus 311 aaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~ 389 (461)
.-+|-+|++.=++-.+.+++.+++||+|-+ ..|.-+|.||.. .| ..+.+|.|+
T Consensus 137 ~PcTp~avi~ll~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------AtVtichs~-------------- 190 (282)
T PRK14182 137 RPCTPAGVMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLE-----RH-------ATVTIAHSR-------------- 190 (282)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC--------------
Confidence 456788888999999999999999999986 567778877754 13 245555442
Q ss_pred hhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHH
Q 012553 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEA 432 (461)
Q Consensus 390 k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~ 432 (461)
.++|.+.++. +|++|-..|.++.+++++|+.
T Consensus 191 ----------T~nl~~~~~~--ADIvI~AvGk~~~i~~~~ik~ 221 (282)
T PRK14182 191 ----------TADLAGEVGR--ADILVAAIGKAELVKGAWVKE 221 (282)
T ss_pred ----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcCC
Confidence 1347788887 999999999999999999984
No 164
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.27 E-value=3.3 Score=42.47 Aligned_cols=90 Identities=23% Similarity=0.347 Sum_probs=67.3
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCC
Q 012553 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (461)
Q Consensus 309 GTaaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~ 387 (461)
+=.-+|-.|++.=++-.|.+++.+++||+|.+ ..|.-+|.||.. .|... ...+.+|.|+
T Consensus 131 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~~---~AtVtvchs~------------ 190 (287)
T PRK14181 131 GFIPCTPAGIIELLKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQ-----KHPDT---NATVTLLHSQ------------ 190 (287)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHh-----CcCCC---CCEEEEeCCC------------
Confidence 33466788888889999999999999999986 567788887754 22110 1245554442
Q ss_pred hhhhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHH
Q 012553 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEA 432 (461)
Q Consensus 388 ~~k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~ 432 (461)
.++|.+.++. +|++|-..|.++.+++|+|+.
T Consensus 191 ------------T~~l~~~~~~--ADIvV~AvG~p~~i~~~~ik~ 221 (287)
T PRK14181 191 ------------SENLTEILKT--ADIIIAAIGVPLFIKEEMIAE 221 (287)
T ss_pred ------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcCC
Confidence 1358888887 999999999999999999984
No 165
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=86.18 E-value=6.9 Score=40.43 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=30.6
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 326 g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
+..|.+++|.|+|.|..|..+|+.+... |. +++.+|+.
T Consensus 141 ~~~l~g~~VgIIG~G~IG~~vA~~L~~~-----G~-------~V~~~d~~ 178 (330)
T PRK12480 141 SKPVKNMTVAIIGTGRIGAATAKIYAGF-----GA-------TITAYDAY 178 (330)
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEEeCC
Confidence 3468899999999999999999988642 53 68888864
No 166
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.16 E-value=0.36 Score=52.64 Aligned_cols=36 Identities=25% Similarity=0.276 Sum_probs=26.9
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccce
Q 012553 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (461)
Q Consensus 330 ~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~ 368 (461)
+.-+|+|+|||.||+..|++|.+.-. .+..-|||.|
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~---~V~VLEARdR 49 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGF---DVLVLEARDR 49 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCC---ceEEEeccCC
Confidence 44589999999999999999988621 1344566654
No 167
>PRK06487 glycerate dehydrogenase; Provisional
Probab=86.10 E-value=5 Score=41.11 Aligned_cols=66 Identities=21% Similarity=0.165 Sum_probs=45.1
Q ss_pred CCCceeccCC---CchhHHHHHHHHHHHHHh------------------------CCCcccceEEEeCcchHHHHHHHHH
Q 012553 298 TTHLVFNDDI---QGTASVVLAGVVAALKLI------------------------GGTLAEHRFLFLGAGEAGTGIAELI 350 (461)
Q Consensus 298 ~~~~~FnDDi---QGTaaV~LAgll~Alk~~------------------------g~~l~d~riv~~GAGsAgiGiA~ll 350 (461)
..|.+.|--- +.+|=-+++.+|+..|-. +..|.++++.|+|.|..|..+|+.+
T Consensus 88 ~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l 167 (317)
T PRK06487 88 RGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLA 167 (317)
T ss_pred CCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHH
Confidence 3566666322 345555677777665432 2358899999999999999999988
Q ss_pred HHHHHHhcCCChhhccceEEEEcCC
Q 012553 351 ALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 351 ~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
. ++ |+ +|+.+|+.
T Consensus 168 ~-~f----gm-------~V~~~~~~ 180 (317)
T PRK06487 168 E-AF----GM-------RVLIGQLP 180 (317)
T ss_pred h-hC----CC-------EEEEECCC
Confidence 5 32 64 67777875
No 168
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=86.05 E-value=0.72 Score=44.02 Aligned_cols=39 Identities=31% Similarity=0.492 Sum_probs=34.1
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCC
Q 012553 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (461)
Q Consensus 327 ~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~G 376 (461)
++|++.||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+-
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~~~-----GV------g~i~lvD~d~ 53 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLVLA-----GI------DSITIVDHRL 53 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEECCc
Confidence 568899999999999999999999875 65 6899999874
No 169
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=86.01 E-value=2.8 Score=44.46 Aligned_cols=84 Identities=18% Similarity=0.249 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChh
Q 012553 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (461)
Q Consensus 311 aaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~ 389 (461)
.-+|-+|++.-|+..+.+++.+++||+|-+ -.|.-+|.||.. .|. .+.+|.|+
T Consensus 211 ~PCTp~avielL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~-----~~A-------TVTicHs~-------------- 264 (364)
T PLN02616 211 VPCTPKGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQR-----EDA-------TVSIVHSR-------------- 264 (364)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHH-----CCC-------eEEEeCCC--------------
Confidence 456677888889999999999999999975 567778777754 232 46666542
Q ss_pred hhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHH
Q 012553 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEA 432 (461)
Q Consensus 390 k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~ 432 (461)
.++|.+.++. +|++|-..|.++.++.++|+.
T Consensus 265 ----------T~nl~~~~r~--ADIVIsAvGkp~~i~~d~vK~ 295 (364)
T PLN02616 265 ----------TKNPEEITRE--ADIIISAVGQPNMVRGSWIKP 295 (364)
T ss_pred ----------CCCHHHHHhh--CCEEEEcCCCcCcCCHHHcCC
Confidence 1358888887 999999999999999999984
No 170
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.86 E-value=3.4 Score=42.63 Aligned_cols=88 Identities=14% Similarity=0.255 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChh
Q 012553 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (461)
Q Consensus 311 aaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~ 389 (461)
.-+|-.|++.=++-.+.+++.++++|+|.+ .-|.-+|.||... +.. ....+.+|.|+
T Consensus 137 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~-----~~~---~~aTVtvchs~-------------- 194 (297)
T PRK14167 137 KPCTPHGIQKLLAAAGVDTEGADVVVVGRSDIVGKPMANLLIQK-----ADG---GNATVTVCHSR-------------- 194 (297)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCcccHHHHHHHHhcC-----ccC---CCCEEEEeCCC--------------
Confidence 356778888889999999999999999986 5678888877531 110 01235555442
Q ss_pred hhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHH
Q 012553 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEA 432 (461)
Q Consensus 390 k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~ 432 (461)
.++|.+.+++ +|++|-..|.++.+|.++|+.
T Consensus 195 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik~ 225 (297)
T PRK14167 195 ----------TDDLAAKTRR--ADIVVAAAGVPELIDGSMLSE 225 (297)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcCC
Confidence 1358888887 999999999999999999984
No 171
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=85.86 E-value=2.1 Score=41.72 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=26.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
.+|.|+|+|..|..+|..+... |. ...+++++|+.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-----g~----~~~~v~v~~r~ 37 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLAS-----GV----PAKDIIVSDPS 37 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhC-----CC----CcceEEEEcCC
Confidence 4799999999999999988653 42 13467888764
No 172
>PRK05442 malate dehydrogenase; Provisional
Probab=85.48 E-value=5.4 Score=41.30 Aligned_cols=114 Identities=13% Similarity=-0.000 Sum_probs=68.8
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCc---cccCCcCCCChhhhhhccccCCCCCHHHhh
Q 012553 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL---IVSSRKDSLQHFKKPWAHEHEPVNNLLDAV 407 (461)
Q Consensus 332 ~riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GL---i~~~R~~~L~~~k~~fA~~~~~~~~L~eaV 407 (461)
.||.|+|| |..|..+|-.|+.. |+-...-...|.|+|.+.- ......| |.+...++-....-..+..+.+
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~-----~~~~~~~~~el~LiDi~~~~~~~~g~a~D-l~~~~~~~~~~~~i~~~~y~~~ 78 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASG-----DMLGKDQPVILQLLEIPPALKALEGVVME-LDDCAFPLLAGVVITDDPNVAF 78 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhh-----hhcCCCCccEEEEEecCCcccccceeehh-hhhhhhhhcCCcEEecChHHHh
Confidence 38999998 99999998877653 3310001138999998532 1111112 3333323322211124567788
Q ss_pred cccCCcEEEeccCC---CC-----------CCCHHHHHHHhcCC-CCcEEEEcCCCCchhh
Q 012553 408 KVIKPTILIGSSGV---GR-----------TFTKEVIEAMASFN-EVVFQALLWLIRKFNF 453 (461)
Q Consensus 408 ~~vkptvLIG~S~~---~g-----------~Ft~evv~~Ma~~~-erPIIF~Lsnp~~~~~ 453 (461)
++ +|++|=+.+. +| .+=+++++.+++++ ...||+-.|||-..+-
T Consensus 79 ~d--aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t 137 (326)
T PRK05442 79 KD--ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNA 137 (326)
T ss_pred CC--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHH
Confidence 87 8988855443 33 12356677778866 6999999999987653
No 173
>PRK07680 late competence protein ComER; Validated
Probab=85.44 E-value=1.9 Score=42.54 Aligned_cols=100 Identities=10% Similarity=0.109 Sum_probs=54.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccccCCCCCHHHhhcccCC
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKP 412 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkp 412 (461)
+|.|+|+|..|.++|..+... |.- ...+++++|++- +........|. ......+..++++. +
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~-----g~~---~~~~v~v~~r~~-------~~~~~~~~~~~-g~~~~~~~~~~~~~--a 63 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLES-----GAV---KPSQLTITNRTP-------AKAYHIKERYP-GIHVAKTIEEVISQ--S 63 (273)
T ss_pred EEEEECccHHHHHHHHHHHHC-----CCC---CcceEEEECCCH-------HHHHHHHHHcC-CeEEECCHHHHHHh--C
Confidence 689999999999999988653 420 124678777631 11111111110 00112356666654 6
Q ss_pred cEEEeccCCCCCCCHHHHHHHhcCC-CCcEEEEcCCCCchh
Q 012553 413 TILIGSSGVGRTFTKEVIEAMASFN-EVVFQALLWLIRKFN 452 (461)
Q Consensus 413 tvLIG~S~~~g~Ft~evv~~Ma~~~-erPIIF~Lsnp~~~~ 452 (461)
|++| ++..+ ...+++++.++.+- +..+|..++|..++-
T Consensus 64 DiVi-lav~p-~~~~~vl~~l~~~l~~~~~iis~~ag~~~~ 102 (273)
T PRK07680 64 DLIF-ICVKP-LDIYPLLQKLAPHLTDEHCLVSITSPISVE 102 (273)
T ss_pred CEEE-EecCH-HHHHHHHHHHHhhcCCCCEEEEECCCCCHH
Confidence 6665 22223 34566777666432 345777777765543
No 174
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=85.44 E-value=2.1 Score=43.27 Aligned_cols=106 Identities=15% Similarity=0.156 Sum_probs=65.3
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC-CccccCCcCCCChhhhhhcccc-CCCCCHHHhhcccC
Q 012553 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKVIK 411 (461)
Q Consensus 334 iv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~-GLi~~~R~~~L~~~k~~fA~~~-~~~~~L~eaV~~vk 411 (461)
|.|+|||..|..+|-.++. .|+ ...+.++|.+ .++..-..| |.+....+.... ....+ .+.+++
T Consensus 1 i~iiGaG~VG~~~a~~l~~-----~~~-----~~el~l~D~~~~~~~g~~~D-L~~~~~~~~~~~i~~~~~-~~~l~~-- 66 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIA-----KGL-----ASELVLVDVNEEKAKGDALD-LSHASAFLATGTIVRGGD-YADAAD-- 66 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCccHHHHHHHh-HHHhccccCCCeEEECCC-HHHhCC--
Confidence 5789999999999976654 265 3589999973 221111112 333332221100 00134 457777
Q ss_pred CcEEEeccCCC---CC-----------CCHHHHHHHhcCCCCcEEEEcCCCCchhh
Q 012553 412 PTILIGSSGVG---RT-----------FTKEVIEAMASFNEVVFQALLWLIRKFNF 453 (461)
Q Consensus 412 ptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIF~Lsnp~~~~~ 453 (461)
.|++|=+.+.+ |- +=+++++.+.+++..-+|+-.+||-.++-
T Consensus 67 aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d~~~ 122 (300)
T cd00300 67 ADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDILT 122 (300)
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHHHHH
Confidence 88888554433 21 12467778888999999999999998763
No 175
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=85.12 E-value=2.5 Score=42.88 Aligned_cols=35 Identities=23% Similarity=0.406 Sum_probs=27.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcC-CChhhccceEEEEcCC
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTK-APVEETRKKICLVDSK 375 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~G-ls~eeA~~~i~lvDs~ 375 (461)
.||.|+|+|..|-+|+.-|+.. | ++ ..+|+++|+.
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~-----g~~~----~~~I~v~~~~ 37 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKS-----GALP----PEEIIVTNRS 37 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhc-----CCCC----cceEEEeCCC
Confidence 5899999999999998888764 5 32 4688877763
No 176
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=85.12 E-value=5 Score=41.19 Aligned_cols=36 Identities=17% Similarity=0.112 Sum_probs=29.9
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcC
Q 012553 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (461)
Q Consensus 327 ~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs 374 (461)
..+.++++.|+|.|..|..+|+.+... |+ +++.+|+
T Consensus 132 ~~l~g~tvgIvG~G~IG~~vA~~l~af-----G~-------~V~~~~~ 167 (312)
T PRK15469 132 YHREDFTIGILGAGVLGSKVAQSLQTW-----GF-------PLRCWSR 167 (312)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEeC
Confidence 468899999999999999999998743 65 5777776
No 177
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=85.05 E-value=1.3 Score=45.44 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=19.6
Q ss_pred cceEEEeCcchHHHHHHHHHHH
Q 012553 331 EHRFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 331 d~riv~~GAGsAgiGiA~ll~~ 352 (461)
..||.|+|||+-|..+|..+..
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~ 28 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICAR 28 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHH
Confidence 3789999999999999998865
No 178
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=84.99 E-value=2.4 Score=43.03 Aligned_cols=106 Identities=17% Similarity=0.197 Sum_probs=63.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccccC-CCCCHHHhhcccC
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE-PVNNLLDAVKVIK 411 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~-~~~~L~eaV~~vk 411 (461)
||.|+|+|..|..+|-.++.. |+ ...++++|..-=...+....+.+. .+|..... ...+. +++++
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~-----g~-----~~ev~l~D~~~~~~~g~a~dl~~~-~~~~~~~~i~~~d~-~~l~~-- 67 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLR-----GL-----ASEIVLVDINKAKAEGEAMDLAHG-TPFVKPVRIYAGDY-ADCKG-- 67 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHc-----CC-----CCEEEEEECCchhhhhHHHHHHcc-ccccCCeEEeeCCH-HHhCC--
Confidence 799999999999999887642 54 468999997410000000001111 11111100 01344 55776
Q ss_pred CcEEEeccCCCCC----C----------CHHHHHHHhcCCCCcEEEEcCCCCchh
Q 012553 412 PTILIGSSGVGRT----F----------TKEVIEAMASFNEVVFQALLWLIRKFN 452 (461)
Q Consensus 412 ptvLIG~S~~~g~----F----------t~evv~~Ma~~~erPIIF~Lsnp~~~~ 452 (461)
+|+.|=+.+.+.. . =+++++.+.+++..-+|+..+||-.++
T Consensus 68 aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d~~ 122 (308)
T cd05292 68 ADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVDVL 122 (308)
T ss_pred CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHH
Confidence 7887744443311 1 246788888888899999999998765
No 179
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=84.95 E-value=7.8 Score=42.49 Aligned_cols=66 Identities=20% Similarity=0.195 Sum_probs=46.4
Q ss_pred CCCceeccCC---CchhHHHHHHHHHHHHH------------------hCCCcccceEEEeCcchHHHHHHHHHHHHHHH
Q 012553 298 TTHLVFNDDI---QGTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISK 356 (461)
Q Consensus 298 ~~~~~FnDDi---QGTaaV~LAgll~Alk~------------------~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~ 356 (461)
..++|.|-.- +.+|=-+++-+|+..|- .|..|.++++.|+|.|..|..+|+.+...
T Consensus 86 ~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~f--- 162 (526)
T PRK13581 86 RGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGSEVAKRAKAF--- 162 (526)
T ss_pred CCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECCCHHHHHHHHHHHhC---
Confidence 4566666421 12445567777776653 24568899999999999999999998643
Q ss_pred hcCCChhhccceEEEEcCC
Q 012553 357 QTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 357 ~~Gls~eeA~~~i~lvDs~ 375 (461)
|+ +++.+|+.
T Consensus 163 --G~-------~V~~~d~~ 172 (526)
T PRK13581 163 --GM-------KVIAYDPY 172 (526)
T ss_pred --CC-------EEEEECCC
Confidence 64 68888874
No 180
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=84.78 E-value=0.49 Score=55.80 Aligned_cols=43 Identities=19% Similarity=0.319 Sum_probs=34.6
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 327 ~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
.+|++.||+++|||+.|+-+++.|+.+ |+.-.+ ..+|.++|-+
T Consensus 415 ~kL~~~kVlvvGaGGlG~e~lknLal~-----Gv~~~~-~G~i~IvD~D 457 (1008)
T TIGR01408 415 QKLQNLNIFLVGCGAIGCEMLKNFALM-----GVGTGK-KGMITVTDPD 457 (1008)
T ss_pred HHHhhCcEEEECCChHHHHHHHHHHHh-----CCCcCC-CCeEEEECCC
Confidence 468899999999999999999999875 652111 3689999986
No 181
>PRK14851 hypothetical protein; Provisional
Probab=84.76 E-value=3 Score=47.44 Aligned_cols=106 Identities=14% Similarity=0.088 Sum_probs=67.4
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccC--Cc-----CCCChhhhhhccc---
Q 012553 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS--RK-----DSLQHFKKPWAHE--- 396 (461)
Q Consensus 327 ~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~--R~-----~~L~~~k~~fA~~--- 396 (461)
++|++.||+|+|+|..|..+|+.|+.+ |+ .+|.++|-+=+-..+ |. +.+-..|..-+..
T Consensus 39 ~kL~~~~VlIvG~GGlGs~va~~Lar~-----GV------G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~ 107 (679)
T PRK14851 39 ERLAEAKVAIPGMGGVGGVHLITMVRT-----GI------GRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQAL 107 (679)
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHHHh-----CC------CeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHH
Confidence 678999999999999999999999875 64 689999976332211 10 1121222222211
Q ss_pred --cC---------CC--CCHHHhhcccCCcEEEeccCCCCCC-CHHHHHHHhcCCCCcEEEEcC
Q 012553 397 --HE---------PV--NNLLDAVKVIKPTILIGSSGVGRTF-TKEVIEAMASFNEVVFQALLW 446 (461)
Q Consensus 397 --~~---------~~--~~L~eaV~~vkptvLIG~S~~~g~F-t~evv~~Ma~~~erPIIF~Ls 446 (461)
.+ .+ .++.+.+++ .|++|-..... .| ++..|...|..+..|+|++-.
T Consensus 108 ~inP~~~I~~~~~~i~~~n~~~~l~~--~DvVid~~D~~-~~~~r~~l~~~c~~~~iP~i~~g~ 168 (679)
T PRK14851 108 SINPFLEITPFPAGINADNMDAFLDG--VDVVLDGLDFF-QFEIRRTLFNMAREKGIPVITAGP 168 (679)
T ss_pred HhCCCCeEEEEecCCChHHHHHHHhC--CCEEEECCCCC-cHHHHHHHHHHHHHCCCCEEEeec
Confidence 01 11 246677776 89998555321 22 345677778888999998754
No 182
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=84.63 E-value=5.9 Score=40.40 Aligned_cols=111 Identities=20% Similarity=0.184 Sum_probs=68.2
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCC---ccccCCcCCCChhhhhhcccc--CCCCCHHH
Q 012553 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG---LIVSSRKDSLQHFKKPWAHEH--EPVNNLLD 405 (461)
Q Consensus 332 ~riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~G---Li~~~R~~~L~~~k~~fA~~~--~~~~~L~e 405 (461)
.||.|+|| |..|..+|..++.. |+ ...++++|.+- .+...+.+ +.+....+.... ....+ .+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~-----g~-----~~~v~lvd~~~~~~~l~~~~~d-l~d~~~~~~~~~~i~~~~d-~~ 68 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKE-----DV-----VKEINLISRPKSLEKLKGLRLD-IYDALAAAGIDAEIKISSD-LS 68 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhC-----CC-----CCEEEEEECcccccccccccch-hhhchhccCCCcEEEECCC-HH
Confidence 37999998 99999999987652 54 24799999842 11111111 111000000000 00124 45
Q ss_pred hhcccCCcEEEeccCCC---C-----------CCCHHHHHHHhcCCCCcEEEEcCCCCchhhhhh
Q 012553 406 AVKVIKPTILIGSSGVG---R-----------TFTKEVIEAMASFNEVVFQALLWLIRKFNFCSL 456 (461)
Q Consensus 406 aV~~vkptvLIG~S~~~---g-----------~Ft~evv~~Ma~~~erPIIF~Lsnp~~~~~~~~ 456 (461)
++++ +|++|=+.+.+ | .+-+++++.|++++...+|+--+||-..+---+
T Consensus 69 ~l~~--aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t~~~ 131 (309)
T cd05294 69 DVAG--SDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMTYKA 131 (309)
T ss_pred HhCC--CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH
Confidence 5777 89888555532 2 245678888888999999999999987765433
No 183
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=84.61 E-value=0.86 Score=43.52 Aligned_cols=39 Identities=23% Similarity=0.405 Sum_probs=34.4
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCC
Q 012553 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (461)
Q Consensus 327 ~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~G 376 (461)
++|++.||+|+|+|.-|.-+|+.|+.+ |+ ++|.++|.+-
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~~-----GV------g~i~lvD~d~ 55 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVLS-----GI------GSLTILDDRT 55 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHHc-----CC------CEEEEEECCc
Confidence 568899999999999999999999775 75 7999999874
No 184
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=84.51 E-value=2 Score=46.51 Aligned_cols=47 Identities=26% Similarity=0.363 Sum_probs=37.8
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcC
Q 012553 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (461)
Q Consensus 316 Agll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs 374 (461)
.|++.+++..+.++++.+++|+|+|.+|.+++..+... |. +++++|+
T Consensus 317 ~G~~~~l~~~~~~~~~k~vlIiGaGgiG~aia~~L~~~-----G~-------~V~i~~R 363 (477)
T PRK09310 317 EGLFSLLKQKNIPLNNQHVAIVGAGGAAKAIATTLARA-----GA-------ELLIFNR 363 (477)
T ss_pred HHHHHHHHhcCCCcCCCEEEEEcCcHHHHHHHHHHHHC-----CC-------EEEEEeC
Confidence 47788888888899999999999998888888877642 52 6777775
No 185
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=84.49 E-value=2.3 Score=42.12 Aligned_cols=48 Identities=21% Similarity=0.293 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcC
Q 012553 315 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (461)
Q Consensus 315 LAgll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs 374 (461)
-.|++.+++-.+...+..+++|+|+|.+|.+++..+.+. | .+++++|+
T Consensus 101 ~~G~~~~l~~~~~~~~~k~vliiGaGg~g~aia~~L~~~-----g-------~~v~v~~R 148 (270)
T TIGR00507 101 GIGLVSDLERLIPLRPNQRVLIIGAGGAARAVALPLLKA-----D-------CNVIIANR 148 (270)
T ss_pred HHHHHHHHHhcCCCccCCEEEEEcCcHHHHHHHHHHHHC-----C-------CEEEEEeC
Confidence 345566666545556678999999998888888777542 4 26888876
No 186
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=84.29 E-value=1.3 Score=48.02 Aligned_cols=111 Identities=16% Similarity=0.287 Sum_probs=71.7
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccc-cCC-----CCCH
Q 012553 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNL 403 (461)
Q Consensus 330 ~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~-~~~-----~~~L 403 (461)
+..||+|+||||..+ ++++...+.+...++ ...|||+|-+ .+|.+.....-+.+.+. ..+ ..++
T Consensus 2 ~~~KI~iIGgGSt~t--p~~v~g~l~~~e~l~----~~el~L~Did----~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~ 71 (442)
T COG1486 2 KKFKIVIIGGGSTYT--PKLLLGDLARTEELP----VRELALYDID----EERLKIIAILAKKLVEEAGAPVKVEATTDR 71 (442)
T ss_pred CcceEEEECCCcccc--HHHHHHHHhcCccCC----cceEEEEeCC----HHHHHHHHHHHHHHHHhhCCCeEEEEecCH
Confidence 457999999999854 566766665555565 4689999963 34422111122233322 122 2589
Q ss_pred HHhhcccCCcEEE---------------------e-----ccCCCCCCC--------HHHHHHHhcCCCCcEEEEcCCCC
Q 012553 404 LDAVKVIKPTILI---------------------G-----SSGVGRTFT--------KEVIEAMASFNEVVFQALLWLIR 449 (461)
Q Consensus 404 ~eaV~~vkptvLI---------------------G-----~S~~~g~Ft--------~evv~~Ma~~~erPIIF~Lsnp~ 449 (461)
.+|+++ +|-+| | +.++||.|. -|+++.|-+.+..--++=.+||-
T Consensus 72 ~eAl~g--AdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~ 149 (442)
T COG1486 72 REALEG--ADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPA 149 (442)
T ss_pred HHHhcC--CCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChH
Confidence 999998 77776 1 123344332 48899999999999999999996
Q ss_pred chh
Q 012553 450 KFN 452 (461)
Q Consensus 450 ~~~ 452 (461)
-.+
T Consensus 150 ~~v 152 (442)
T COG1486 150 AIV 152 (442)
T ss_pred HHH
Confidence 543
No 187
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=84.27 E-value=0.51 Score=51.42 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.4
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHH
Q 012553 327 GTLAEHRFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 327 ~~l~d~riv~~GAGsAgiGiA~ll~~ 352 (461)
+...+.||||+|||.||++.|.-|++
T Consensus 17 ~~~~~~kIvIIGAG~AGLaAA~rLle 42 (498)
T KOG0685|consen 17 KARGNAKIVIIGAGIAGLAAATRLLE 42 (498)
T ss_pred hccCCceEEEECCchHHHHHHHHHHH
Confidence 44566799999999999999999984
No 188
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=84.26 E-value=11 Score=40.08 Aligned_cols=73 Identities=19% Similarity=0.212 Sum_probs=51.9
Q ss_pred HHHHHHcCCCceeccCCC---chhHHHHHHHHHHHHH------------------hCCCcccceEEEeCcchHHHHHHHH
Q 012553 291 ELLAKYGTTHLVFNDDIQ---GTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAEL 349 (461)
Q Consensus 291 ~iL~ryr~~~~~FnDDiQ---GTaaV~LAgll~Alk~------------------~g~~l~d~riv~~GAGsAgiGiA~l 349 (461)
.+..--+..|+|+|---- .+|=-+++.+|+..|- .|..|.+.++.|+|.|..|..+|+.
T Consensus 90 d~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGIiG~G~IG~~vA~~ 169 (409)
T PRK11790 90 DLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVGYGHIGTQLSVL 169 (409)
T ss_pred cHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEEEECCCHHHHHHHHH
Confidence 333333468999995322 3444568888877653 2456899999999999999999998
Q ss_pred HHHHHHHhcCCChhhccceEEEEcCC
Q 012553 350 IALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 350 l~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
+... |+ +++.+|+.
T Consensus 170 ~~~f-----Gm-------~V~~~d~~ 183 (409)
T PRK11790 170 AESL-----GM-------RVYFYDIE 183 (409)
T ss_pred HHHC-----CC-------EEEEECCC
Confidence 8542 64 68888864
No 189
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=84.18 E-value=5.8 Score=40.98 Aligned_cols=112 Identities=16% Similarity=0.104 Sum_probs=68.5
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccc-eEEEEcCCCcc---ccCCcCCCChhhhhhccccCCCCCHHHhh
Q 012553 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRK-KICLVDSKGLI---VSSRKDSLQHFKKPWAHEHEPVNNLLDAV 407 (461)
Q Consensus 333 riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~-~i~lvDs~GLi---~~~R~~~L~~~k~~fA~~~~~~~~L~eaV 407 (461)
||.|.|| |..|..+|..|+.. |+-..+ .+ .+.|+|.+.-. .-...| |.+..-++........+..+++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~-----~~~~~~-~e~el~LiD~~~~~~~a~g~~~D-l~d~~~~~~~~~~~~~~~~~~~ 73 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG-----RMLGKD-QPIILHLLDIPPAMKVLEGVVME-LMDCAFPLLDGVVPTHDPAVAF 73 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc-----cccCCC-CccEEEEEecCCcccccceeEee-hhcccchhcCceeccCChHHHh
Confidence 6899999 99999999887642 441100 11 69999974221 111112 3333322221111112567888
Q ss_pred cccCCcEEEeccCCC---CC-----------CCHHHHHHHhcC-CCCcEEEEcCCCCchhh
Q 012553 408 KVIKPTILIGSSGVG---RT-----------FTKEVIEAMASF-NEVVFQALLWLIRKFNF 453 (461)
Q Consensus 408 ~~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~-~erPIIF~Lsnp~~~~~ 453 (461)
++ .|++|=+.+.+ |- +=+++++.|+++ +..-||+--|||-..+-
T Consensus 74 ~~--aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t 132 (324)
T TIGR01758 74 TD--VDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNA 132 (324)
T ss_pred CC--CCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHH
Confidence 87 89998665554 21 125678888888 48999999999987663
No 190
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=83.74 E-value=5.7 Score=39.88 Aligned_cols=93 Identities=14% Similarity=0.133 Sum_probs=57.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccc-cCCCCCHHHhhccc-
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVI- 410 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~-~~~~~~L~eaV~~v- 410 (461)
||.|+|.|..|.++|..|... | .+++++|+.. . ..+ .++.. .....++.|+++..
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~-----g-------~~v~v~dr~~----~---~~~----~~~~~g~~~~~~~~e~~~~~~ 58 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRG-----G-------HEVVGYDRNP----E---AVE----ALAEEGATGADSLEELVAKLP 58 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHC-----C-------CeEEEEECCH----H---HHH----HHHHCCCeecCCHHHHHhhcC
Confidence 799999999999999998753 4 2577777741 1 111 22211 11235788888765
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHhc-CCCCcEEEEcCCCC
Q 012553 411 KPTILIGSSGVGRTFTKEVIEAMAS-FNEVVFQALLWLIR 449 (461)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma~-~~erPIIF~Lsnp~ 449 (461)
+||++|=+-. .....++++..+.. ..+..||+-+|+.+
T Consensus 59 ~~dvvi~~v~-~~~~~~~v~~~l~~~l~~g~ivid~st~~ 97 (301)
T PRK09599 59 APRVVWLMVP-AGEITDATIDELAPLLSPGDIVIDGGNSY 97 (301)
T ss_pred CCCEEEEEec-CCcHHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence 3776663322 33466777666543 34567888887654
No 191
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=83.65 E-value=1.3 Score=44.74 Aligned_cols=32 Identities=34% Similarity=0.406 Sum_probs=25.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
.||.|+|+|+.|.++|..+... |. ++.++|+.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~-----G~-------~V~~~~r~ 36 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK-----GV-------PVRLWARR 36 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEeCC
Confidence 4899999999999999998763 42 47777763
No 192
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=83.50 E-value=2.6 Score=42.56 Aligned_cols=31 Identities=32% Similarity=0.429 Sum_probs=24.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
||.|+|||+.|..+|..+... | .++.+++++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~-----g-------~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK-----K-------ISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEecC
Confidence 699999999999999998753 4 356677764
No 193
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.48 E-value=4.9 Score=41.48 Aligned_cols=84 Identities=19% Similarity=0.313 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChh
Q 012553 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (461)
Q Consensus 311 aaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~ 389 (461)
.-+|-.|++.=++-.|.+++.+++||+|.+ ..|.-+|.||.. .|. .+.+|.|+
T Consensus 138 ~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~-----~~a-------tVtv~hs~-------------- 191 (297)
T PRK14186 138 RSCTPAGVMRLLRSQQIDIAGKKAVVVGRSILVGKPLALMLLA-----ANA-------TVTIAHSR-------------- 191 (297)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 356778888889999999999999999976 568888888754 242 45555442
Q ss_pred hhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHH
Q 012553 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEA 432 (461)
Q Consensus 390 k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~ 432 (461)
.++|.+.+++ +|++|-..|.++.|++++|+.
T Consensus 192 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik~ 222 (297)
T PRK14186 192 ----------TQDLASITRE--ADILVAAAGRPNLIGAEMVKP 222 (297)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcCC
Confidence 1357888887 999999999999999999984
No 194
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=83.47 E-value=1.6 Score=42.02 Aligned_cols=108 Identities=14% Similarity=0.195 Sum_probs=66.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhcccc-CC-----CCCHHHh
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EP-----VNNLLDA 406 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~-~~-----~~~L~ea 406 (461)
||+|+||||+-.. .++...+.+...+ ....|+|+|.+- .|-+.....-+.+++.. .+ ..++.||
T Consensus 1 KI~iIGaGS~~~~--~~l~~~l~~~~~l----~~~ei~L~Did~----~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eA 70 (183)
T PF02056_consen 1 KITIIGAGSTYFP--LLLLGDLLRTEEL----SGSEIVLMDIDE----ERLEIVERLARRMVEEAGADLKVEATTDRREA 70 (183)
T ss_dssp EEEEETTTSCCHH--HHHHHHHHCTTTS----TEEEEEEE-SCH----HHHHHHHHHHHHHHHHCTTSSEEEEESSHHHH
T ss_pred CEEEECCchHhhH--HHHHHHHhcCccC----CCcEEEEEcCCH----HHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHH
Confidence 7999999998654 3444444333344 356899999852 23111112223333321 11 2589999
Q ss_pred hcccCCcEEE---------------------eccC-------CCCCCC--------HHHHHHHhcCCCCcEEEEcCCCCc
Q 012553 407 VKVIKPTILI---------------------GSSG-------VGRTFT--------KEVIEAMASFNEVVFQALLWLIRK 450 (461)
Q Consensus 407 V~~vkptvLI---------------------G~S~-------~~g~Ft--------~evv~~Ma~~~erPIIF~Lsnp~~ 450 (461)
+++ +|.+| |+-+ +||.|. .|+.+.|.+.+..--|+=.+||..
T Consensus 71 l~g--ADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~~ 148 (183)
T PF02056_consen 71 LEG--ADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPMG 148 (183)
T ss_dssp HTT--ESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHH
T ss_pred hCC--CCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChHH
Confidence 998 89888 3322 233332 588999999999999999999986
Q ss_pred hh
Q 012553 451 FN 452 (461)
Q Consensus 451 ~~ 452 (461)
.+
T Consensus 149 ~v 150 (183)
T PF02056_consen 149 IV 150 (183)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 195
>PLN03139 formate dehydrogenase; Provisional
Probab=83.19 E-value=8.2 Score=41.05 Aligned_cols=86 Identities=16% Similarity=0.100 Sum_probs=51.3
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccccCCCCCHHH
Q 012553 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 405 (461)
Q Consensus 326 g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e 405 (461)
+..|.+.+|.|+|.|..|..+|+.+... |+ +++.+|+...-. + ..+..-+ ....+|.|
T Consensus 194 ~~~L~gktVGIVG~G~IG~~vA~~L~af-----G~-------~V~~~d~~~~~~----~---~~~~~g~---~~~~~l~e 251 (386)
T PLN03139 194 AYDLEGKTVGTVGAGRIGRLLLQRLKPF-----NC-------NLLYHDRLKMDP----E---LEKETGA---KFEEDLDA 251 (386)
T ss_pred CcCCCCCEEEEEeecHHHHHHHHHHHHC-----CC-------EEEEECCCCcch----h---hHhhcCc---eecCCHHH
Confidence 4568999999999999999999999642 54 577888754210 0 0000000 11235777
Q ss_pred hhcccCCcEEEeccC----CCCCCCHHHHHHHhc
Q 012553 406 AVKVIKPTILIGSSG----VGRTFTKEVIEAMAS 435 (461)
Q Consensus 406 aV~~vkptvLIG~S~----~~g~Ft~evv~~Ma~ 435 (461)
+++. .|+++=..- .-++|+++.+..|.+
T Consensus 252 ll~~--sDvV~l~lPlt~~T~~li~~~~l~~mk~ 283 (386)
T PLN03139 252 MLPK--CDVVVINTPLTEKTRGMFNKERIAKMKK 283 (386)
T ss_pred HHhh--CCEEEEeCCCCHHHHHHhCHHHHhhCCC
Confidence 6665 666652211 114566666666654
No 196
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=83.19 E-value=9.2 Score=41.92 Aligned_cols=66 Identities=24% Similarity=0.217 Sum_probs=45.7
Q ss_pred CCCceeccCC---CchhHHHHHHHHHHHHH------------------hCCCcccceEEEeCcchHHHHHHHHHHHHHHH
Q 012553 298 TTHLVFNDDI---QGTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISK 356 (461)
Q Consensus 298 ~~~~~FnDDi---QGTaaV~LAgll~Alk~------------------~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~ 356 (461)
..++|.|--- +.+|=-++|.+|+..|- .|..|.++++.|+|-|..|..+|+.+...
T Consensus 84 ~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~f--- 160 (525)
T TIGR01327 84 RGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKAF--- 160 (525)
T ss_pred CCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHHHHHHHhC---
Confidence 4566666321 23444556666665542 25578999999999999999999998642
Q ss_pred hcCCChhhccceEEEEcCC
Q 012553 357 QTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 357 ~~Gls~eeA~~~i~lvDs~ 375 (461)
|+ +++.+|+.
T Consensus 161 --G~-------~V~~~d~~ 170 (525)
T TIGR01327 161 --GM-------KVLAYDPY 170 (525)
T ss_pred --CC-------EEEEECCC
Confidence 54 68888874
No 197
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=83.03 E-value=4.9 Score=41.43 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=23.4
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHH
Q 012553 326 GGTLAEHRFLFLGAGEAGTGIAELIA 351 (461)
Q Consensus 326 g~~l~d~riv~~GAGsAgiGiA~ll~ 351 (461)
|..|.++++.|+|.|..|..+|+.+.
T Consensus 140 g~~L~gktvGIiG~G~IG~~va~~l~ 165 (323)
T PRK15409 140 GTDVHHKTLGIVGMGRIGMALAQRAH 165 (323)
T ss_pred cCCCCCCEEEEEcccHHHHHHHHHHH
Confidence 45689999999999999999999875
No 198
>PLN02602 lactate dehydrogenase
Probab=83.02 E-value=3.6 Score=43.10 Aligned_cols=106 Identities=15% Similarity=0.188 Sum_probs=67.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccccCCC---CCHHHhhc
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV---NNLLDAVK 408 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~---~~L~eaV~ 408 (461)
.||.|+|||..|..+|-.|+. .|+ ...|.|+|..-=...+-.-+|.+.. +|-.. ..+ .+.++ ++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~-----~~l-----~~el~LiDi~~~~~~g~a~DL~~~~-~~~~~-~~i~~~~dy~~-~~ 104 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILT-----QDL-----ADELALVDVNPDKLRGEMLDLQHAA-AFLPR-TKILASTDYAV-TA 104 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC-----CCEEEEEeCCCchhhHHHHHHHhhh-hcCCC-CEEEeCCCHHH-hC
Confidence 499999999999999998764 255 3589999973111111000122221 22211 111 24444 67
Q ss_pred ccCCcEEEeccCCC---CCCCH------------HHHHHHhcCCCCcEEEEcCCCCchhh
Q 012553 409 VIKPTILIGSSGVG---RTFTK------------EVIEAMASFNEVVFQALLWLIRKFNF 453 (461)
Q Consensus 409 ~vkptvLIG~S~~~---g~Ft~------------evv~~Ma~~~erPIIF~Lsnp~~~~~ 453 (461)
+ +|++|=+.+.+ | -|. ++++.|.+++..-+|+-.+||...+-
T Consensus 105 d--aDiVVitAG~~~k~g-~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvdv~t 161 (350)
T PLN02602 105 G--SDLCIVTAGARQIPG-ESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVDVLT 161 (350)
T ss_pred C--CCEEEECCCCCCCcC-CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchHHHH
Confidence 6 89999655543 3 233 77888889999999999999998763
No 199
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=82.99 E-value=4.5 Score=42.63 Aligned_cols=84 Identities=17% Similarity=0.223 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChh
Q 012553 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (461)
Q Consensus 311 aaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~ 389 (461)
.-+|-+|++.=++-.|.+++.+++||+|-+ -.|.-+|.+|.. .|. .+.+|.++
T Consensus 194 ~PCTp~avi~LL~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~-----~~A-------TVTicHs~-------------- 247 (345)
T PLN02897 194 VSCTPKGCVELLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQR-----HDA-------TVSTVHAF-------------- 247 (345)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHH-----CCC-------EEEEEcCC--------------
Confidence 456778888888999999999999999975 567778777754 232 45555542
Q ss_pred hhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHH
Q 012553 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEA 432 (461)
Q Consensus 390 k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~ 432 (461)
.++|.+.++. +|++|-..|.++.++.++|+.
T Consensus 248 ----------T~nl~~~~~~--ADIvIsAvGkp~~v~~d~vk~ 278 (345)
T PLN02897 248 ----------TKDPEQITRK--ADIVIAAAGIPNLVRGSWLKP 278 (345)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcCC
Confidence 1347788887 999999999999999999984
No 200
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=82.79 E-value=1.7 Score=38.47 Aligned_cols=101 Identities=21% Similarity=0.172 Sum_probs=58.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCc-------CCCChhhhhhcc----c-cC--
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK-------DSLQHFKKPWAH----E-HE-- 398 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~-------~~L~~~k~~fA~----~-~~-- 398 (461)
||+++|+|.-|..+|+.|+.. |+ ++|.++|.+-+=..+-. +.+-..|..-+. . .+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-----Gv------~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v 69 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-----GV------GKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGV 69 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC------CEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCc
Confidence 689999999999999999775 64 68999998732211110 011111211111 0 00
Q ss_pred -------CC--CCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcCCC
Q 012553 399 -------PV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLWLI 448 (461)
Q Consensus 399 -------~~--~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Lsnp 448 (461)
.. .+..+.++. +|++|.++.. .-....+..++.....|.|.+-...
T Consensus 70 ~i~~~~~~~~~~~~~~~~~~--~diVi~~~d~--~~~~~~l~~~~~~~~i~~i~~~~~g 124 (143)
T cd01483 70 NVTAVPEGISEDNLDDFLDG--VDLVIDAIDN--IAVRRALNRACKELGIPVIDAGGLG 124 (143)
T ss_pred EEEEEeeecChhhHHHHhcC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 01 112344444 8888877664 2334556666777778888876654
No 201
>PRK06932 glycerate dehydrogenase; Provisional
Probab=82.48 E-value=13 Score=38.17 Aligned_cols=37 Identities=19% Similarity=0.309 Sum_probs=29.2
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 327 ~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
..|.++++.|+|-|..|..+|+++. ++ |+ +++.+|+.
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~-~f----g~-------~V~~~~~~ 179 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQ-AL----GM-------KVLYAEHK 179 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHh-cC----CC-------EEEEECCC
Confidence 4688999999999999999999874 32 64 56667753
No 202
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=82.48 E-value=1.5 Score=43.18 Aligned_cols=105 Identities=16% Similarity=0.143 Sum_probs=63.7
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCc--------CCCChhhhhhcc---
Q 012553 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK--------DSLQHFKKPWAH--- 395 (461)
Q Consensus 327 ~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~--------~~L~~~k~~fA~--- 395 (461)
.+|++.+|+++|+|..|..+|+.|+.+ |+ .+|.++|.+=+ ..+.- +.+-..|..-+.
T Consensus 7 ~~L~~~~VlVvG~GGvGs~va~~Lar~-----GV------g~i~LvD~D~V-~~sNlnRq~~~~~~diG~~Kae~~~~~l 74 (231)
T cd00755 7 EKLRNAHVAVVGLGGVGSWAAEALARS-----GV------GKLTLIDFDVV-CVSNLNRQIHALLSTVGKPKVEVMAERI 74 (231)
T ss_pred HHHhCCCEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCCEE-CchhhcchhCcChhhCCCcHHHHHHHHH
Confidence 357889999999999999999999764 64 69999998732 22110 011111211111
Q ss_pred -c-cCC---------C--CCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcC
Q 012553 396 -E-HEP---------V--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLW 446 (461)
Q Consensus 396 -~-~~~---------~--~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Ls 446 (461)
. .+. . .++.+.+. -++|++|-+.... -.+-.+-..+..+..|+|..+.
T Consensus 75 ~~inP~~~V~~~~~~i~~~~~~~l~~-~~~D~VvdaiD~~--~~k~~L~~~c~~~~ip~I~s~g 135 (231)
T cd00755 75 RDINPECEVDAVEEFLTPDNSEDLLG-GDPDFVVDAIDSI--RAKVALIAYCRKRKIPVISSMG 135 (231)
T ss_pred HHHCCCcEEEEeeeecCHhHHHHHhc-CCCCEEEEcCCCH--HHHHHHHHHHHHhCCCEEEEeC
Confidence 0 111 1 13444442 2489888775432 2344566677777899999886
No 203
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=81.77 E-value=7.9 Score=46.21 Aligned_cols=115 Identities=17% Similarity=0.212 Sum_probs=59.9
Q ss_pred HHHHHHHHHhCC-------C--cccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhcc------------ce---EEE
Q 012553 316 AGVVAALKLIGG-------T--LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR------------KK---ICL 371 (461)
Q Consensus 316 Agll~Alk~~g~-------~--l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~------------~~---i~l 371 (461)
+.+.+|++..|. | +.-.+|||.|+|-+|.|.++++...-.+ . ++.++-+ ++ +|-
T Consensus 179 ~~~~~a~~~~G~~i~~~g~p~gv~P~~vVi~G~G~Vg~gA~~i~~~lg~~-~-v~~~~l~~l~~~~~~~~~~~~~~~~y~ 256 (1042)
T PLN02819 179 AAAKAAVISVGEEIASSGLPLGICPLVFVFTGSGNVSQGAQEIFKLLPHT-F-VEPSKLPELKGISQNKISTKRVYQVYG 256 (1042)
T ss_pred HHHHHHHHhccceeeccCCCCCCCCeEEEEeCCchHHHHHHHHHhhcCCC-c-cCHHHHHHHHHhhcCCccccccceeee
Confidence 444566655543 2 3358999999999999999987543000 0 1111110 11 221
Q ss_pred --EcCCCccc-cCCcCCCChhhhhhccccCCC-CCH-HHhhcccCCcEEEecc----CCCCCCCHH-HHHHHhcC
Q 012553 372 --VDSKGLIV-SSRKDSLQHFKKPWAHEHEPV-NNL-LDAVKVIKPTILIGSS----GVGRTFTKE-VIEAMASF 436 (461)
Q Consensus 372 --vDs~GLi~-~~R~~~L~~~k~~fA~~~~~~-~~L-~eaV~~vkptvLIG~S----~~~g~Ft~e-vv~~Ma~~ 436 (461)
+.+.-.+. ++. +.--+.+..|+++ +.. ..+ ++++.. .|+|||.= ..|.++|++ +++.|.+.
T Consensus 257 ~~~~~~~~~~~~~~-~~~f~~~~y~~~P-e~y~s~F~~~~~~~--advlIn~i~~~~~~P~lvt~~~~~~~mk~G 327 (1042)
T PLN02819 257 CVVTSQDMVEHKDP-SKQFDKADYYAHP-EHYNPVFHEKIAPY--ASVIVNCMYWEKRFPRLLTTKQLQDLTRKG 327 (1042)
T ss_pred eecChHHHhhccCC-ccccchhhhccCc-hhccchhHHHhHhh--CCEEEeeeecCCCCCceeCHHHHHHhhcCC
Confidence 11111111 111 0001112233333 233 345 468877 99999974 345689999 88888753
No 204
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=81.59 E-value=2 Score=41.79 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=26.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCcc
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi 378 (461)
-+|+|+|||.||+..|..|... |+ ++.++|++.-.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~-----G~-------~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARA-----GI-------DVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHT-----TC-------EEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----cc-------ccccchhcccc
Confidence 4799999999999999988763 65 58888886543
No 205
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=80.92 E-value=1.6 Score=49.33 Aligned_cols=40 Identities=25% Similarity=0.398 Sum_probs=34.5
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCc
Q 012553 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (461)
Q Consensus 327 ~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GL 377 (461)
.+|++.||+++|||.-|..+|+.|+.+ |+ ++|.+||.+-+
T Consensus 334 ekL~~~kVLIvGaGGLGs~VA~~La~~-----GV------g~ItlVD~D~V 373 (664)
T TIGR01381 334 ERYSQLKVLLLGAGTLGCNVARCLIGW-----GV------RHITFVDNGKV 373 (664)
T ss_pred HHHhcCeEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCCEE
Confidence 467899999999999999999999875 64 79999998643
No 206
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.75 E-value=4.1 Score=40.54 Aligned_cols=32 Identities=34% Similarity=0.527 Sum_probs=26.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
+||.|+|+|..|.+||..++.+ |. +++++|..
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA-----GY-------DVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-----CC-------eEEEEeCC
Confidence 6899999999999999988653 53 67888863
No 207
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=80.72 E-value=3.3 Score=42.19 Aligned_cols=105 Identities=13% Similarity=0.077 Sum_probs=64.5
Q ss_pred EeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccccCCCCCHHHhhcccCCcEE
Q 012553 336 FLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTIL 415 (461)
Q Consensus 336 ~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkptvL 415 (461)
|+|||..|..+|-+|+. .|+ ...|.|+|.+-=..++-.-.|.+..-.+.++..-..+-.+++++ +|++
T Consensus 1 iIGaG~VG~~~a~~l~~-----~~l-----~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~d--aDiv 68 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLN-----QGI-----ADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKD--ADLV 68 (299)
T ss_pred CCCcCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCC--CCEE
Confidence 57999999999998864 255 35899999842111111001222221111110001233567877 8999
Q ss_pred EeccCCC---CC-----------CCHHHHHHHhcCCCCcEEEEcCCCCchh
Q 012553 416 IGSSGVG---RT-----------FTKEVIEAMASFNEVVFQALLWLIRKFN 452 (461)
Q Consensus 416 IG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIF~Lsnp~~~~ 452 (461)
|=+.+.+ |- +=+++++.+.+++..-+|+-.|||-+.+
T Consensus 69 Vitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~ 119 (299)
T TIGR01771 69 VITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDIL 119 (299)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHH
Confidence 9666653 21 1246788888899999999999998755
No 208
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=80.71 E-value=4.3 Score=40.38 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=26.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
.+|.|+|||..|.+||..++.. |. +++++|.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-----GY-------DVTIVDVS 35 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-----CC-------eEEEEeCC
Confidence 5799999999999999988653 53 68888864
No 209
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=80.65 E-value=2.6 Score=43.57 Aligned_cols=45 Identities=24% Similarity=0.330 Sum_probs=41.9
Q ss_pred CchhHHHHHHHHHHHHHhCCCcccceEEEeCc-chHHHHHHHHHHH
Q 012553 308 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIAL 352 (461)
Q Consensus 308 QGTaaV~LAgll~Alk~~g~~l~d~riv~~GA-GsAgiGiA~ll~~ 352 (461)
-+||-++.-+++.+...+|..|++..+.|+|| |..|.+||+.|.-
T Consensus 144 s~Tayaa~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~ 189 (351)
T COG5322 144 SHTAYAACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAP 189 (351)
T ss_pred ccchHHHHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhcc
Confidence 47999999999999999999999999999998 9999999999864
No 210
>PRK06141 ornithine cyclodeaminase; Validated
Probab=80.59 E-value=3.5 Score=42.04 Aligned_cols=83 Identities=17% Similarity=0.172 Sum_probs=52.6
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccc---cCCCCCHHHh
Q 012553 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNLLDA 406 (461)
Q Consensus 330 ~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~---~~~~~~L~ea 406 (461)
...+++|+|+|..|..++..+... .+ .++|+++|+. ..+ ...+...+.+. .....++.++
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~----~~------~~~V~V~~Rs----~~~---a~~~a~~~~~~g~~~~~~~~~~~a 186 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASV----RP------IKQVRVWGRD----PAK---AEALAAELRAQGFDAEVVTDLEAA 186 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhc----CC------CCEEEEEcCC----HHH---HHHHHHHHHhcCCceEEeCCHHHH
Confidence 568999999999999998876543 12 3678888763 221 22333333221 1123678999
Q ss_pred hcccCCcEEEeccCCC-CCCCHHHHH
Q 012553 407 VKVIKPTILIGSSGVG-RTFTKEVIE 431 (461)
Q Consensus 407 V~~vkptvLIG~S~~~-g~Ft~evv~ 431 (461)
+++ +|++|-++... .+|+.++++
T Consensus 187 v~~--aDIVi~aT~s~~pvl~~~~l~ 210 (314)
T PRK06141 187 VRQ--ADIISCATLSTEPLVRGEWLK 210 (314)
T ss_pred Hhc--CCEEEEeeCCCCCEecHHHcC
Confidence 986 99998766543 346666553
No 211
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=80.38 E-value=9.7 Score=40.02 Aligned_cols=44 Identities=25% Similarity=0.342 Sum_probs=36.0
Q ss_pred chhHHHHHHHHHHHHHh--------------------CCCcccceEEEeCcchHHHHHHHHHHH
Q 012553 309 GTASVVLAGVVAALKLI--------------------GGTLAEHRFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 309 GTaaV~LAgll~Alk~~--------------------g~~l~d~riv~~GAGsAgiGiA~ll~~ 352 (461)
-||-.+++-+|.++|-. |..+.++||.|+|+|+.|..||+.|..
T Consensus 120 ~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~ 183 (336)
T KOG0069|consen 120 DVADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKP 183 (336)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhh
Confidence 47777777788877743 346789999999999999999999876
No 212
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=80.18 E-value=2.2 Score=43.21 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=69.6
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCC-------Chhh-----hhhc
Q 012553 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL-------QHFK-----KPWA 394 (461)
Q Consensus 327 ~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L-------~~~k-----~~fA 394 (461)
.+|++.+|+|+|+|..|.-+|+.|+.+ |+ .+|.++|.+=+-..+-...+ -..| +.+.
T Consensus 26 ~kL~~s~VlVvG~GGVGs~vae~Lar~-----GV------g~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~ 94 (268)
T PRK15116 26 QLFADAHICVVGIGGVGSWAAEALART-----GI------GAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIR 94 (268)
T ss_pred HHhcCCCEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHH
Confidence 468899999999999999999999875 64 68999998754333211001 0111 1111
Q ss_pred cccCC---------C--CCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcC-----CCCchhhhhhh
Q 012553 395 HEHEP---------V--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLW-----LIRKFNFCSLF 457 (461)
Q Consensus 395 ~~~~~---------~--~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Ls-----np~~~~~~~~~ 457 (461)
+-.+. . .++.+.+. -++|++|-+.... =++..+..++..+..|+|..+. +|+++.-+.++
T Consensus 95 ~INP~~~V~~i~~~i~~e~~~~ll~-~~~D~VIdaiD~~--~~k~~L~~~c~~~~ip~I~~gGag~k~dp~~~~~~di~ 170 (268)
T PRK15116 95 QINPECRVTVVDDFITPDNVAEYMS-AGFSYVIDAIDSV--RPKAALIAYCRRNKIPLVTTGGAGGQIDPTQIQVVDLA 170 (268)
T ss_pred hHCCCcEEEEEecccChhhHHHHhc-CCCCEEEEcCCCH--HHHHHHHHHHHHcCCCEEEECCcccCCCCCeEEEEeee
Confidence 10111 0 13334442 1488888665422 2344466677777899998764 57777544443
No 213
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=79.60 E-value=2.1 Score=39.08 Aligned_cols=30 Identities=20% Similarity=0.392 Sum_probs=20.6
Q ss_pred EEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 335 LFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 335 v~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
+|+|||.||++.|..|.+ .|+ +++.++|+.
T Consensus 1 ~IIGaG~aGl~~a~~l~~-----~g~------~~v~v~e~~ 30 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLE-----RGI------DPVVVLERN 30 (203)
T ss_dssp EEE--SHHHHHHHHHHHH-----TT---------EEEEESS
T ss_pred CEECcCHHHHHHHHHHHh-----CCC------CcEEEEeCC
Confidence 689999999999987755 365 348889976
No 214
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=79.56 E-value=7.7 Score=38.43 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=26.2
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcC
Q 012553 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (461)
Q Consensus 331 d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs 374 (461)
..||.|+|+|..|.++|+.++.. |.- ...+++++|+
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~-----g~~---~~~~v~v~~r 38 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHA-----NVV---KGEQITVSNR 38 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----CCC---CcceEEEECC
Confidence 35899999999999999988653 410 1245777775
No 215
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=79.54 E-value=5.3 Score=41.07 Aligned_cols=118 Identities=17% Similarity=0.244 Sum_probs=81.1
Q ss_pred eeeeeecCCcccHHHHHHHHc--CCCceecc--------CCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHH
Q 012553 277 VLIQFEDFANHNAFELLAKYG--TTHLVFND--------DIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTG 345 (461)
Q Consensus 277 ~lIq~EDf~~~~af~iL~ryr--~~~~~FnD--------DiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGs-AgiG 345 (461)
.+|||==.+.-+.-.+++.-- .++==||- ...+--.+|-+|++--++-.+.+|.+.++||+|.+. -|--
T Consensus 92 IlVQlPLp~hld~~~il~~I~p~KDVDG~hp~N~g~L~~~~~~~~PCTp~gi~~ll~~~~i~l~Gk~~vVVGrS~iVGkP 171 (283)
T COG0190 92 ILVQLPLPKHLDEQKLLQAIDPEKDVDGFHPYNLGKLAQGEPGFLPCTPAGIMTLLEEYGIDLRGKNVVVVGRSNIVGKP 171 (283)
T ss_pred EEEeCCCCCCCCHHHHHhhcCcCCCccccChhHhcchhcCCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHH
Confidence 456665444445555555542 12111221 133455778899999999999999999999999975 5777
Q ss_pred HHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccccCCCCCHHHhhcccCCcEEEeccCCCCCC
Q 012553 346 IAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTF 425 (461)
Q Consensus 346 iA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkptvLIG~S~~~g~F 425 (461)
+|.+|..+ + -.+.+|.|+ .++|.+.++. +|++|-.-|.++.|
T Consensus 172 la~lL~~~-----n-------aTVtvcHs~------------------------T~~l~~~~k~--ADIvv~AvG~p~~i 213 (283)
T COG0190 172 LALLLLNA-----N-------ATVTVCHSR------------------------TKDLASITKN--ADIVVVAVGKPHFI 213 (283)
T ss_pred HHHHHHhC-----C-------CEEEEEcCC------------------------CCCHHHHhhh--CCEEEEecCCcccc
Confidence 88777652 3 245566553 1347777887 99999999999999
Q ss_pred CHHHHHH
Q 012553 426 TKEVIEA 432 (461)
Q Consensus 426 t~evv~~ 432 (461)
+.+||+.
T Consensus 214 ~~d~vk~ 220 (283)
T COG0190 214 KADMVKP 220 (283)
T ss_pred ccccccC
Confidence 9888874
No 216
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=79.50 E-value=2.9 Score=38.22 Aligned_cols=91 Identities=14% Similarity=0.168 Sum_probs=48.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccc-cCCCCCHHHhhccc
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVI 410 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~-~~~~~~L~eaV~~v 410 (461)
.||-|+|.|..|.+||+.|... |. +++..|+. .+ .. +++... .....++.|+++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~-----g~-------~v~~~d~~----~~---~~----~~~~~~g~~~~~s~~e~~~~- 57 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA-----GY-------EVTVYDRS----PE---KA----EALAEAGAEVADSPAEAAEQ- 57 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT-----TT-------EEEEEESS----HH---HH----HHHHHTTEEEESSHHHHHHH-
T ss_pred CEEEEEchHHHHHHHHHHHHhc-----CC-------eEEeeccc----hh---hh----hhhHHhhhhhhhhhhhHhhc-
Confidence 5899999999999999999653 53 67877752 11 12 222221 2234678888887
Q ss_pred CCcEEEeccCCCCCCCHHHHHH--Hhc-CCCCcEEEEcCCC
Q 012553 411 KPTILIGSSGVGRTFTKEVIEA--MAS-FNEVVFQALLWLI 448 (461)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~--Ma~-~~erPIIF~Lsnp 448 (461)
.|++|-+-..+ .=.++++.. +.+ ..+-.||.=+|+.
T Consensus 58 -~dvvi~~v~~~-~~v~~v~~~~~i~~~l~~g~iiid~sT~ 96 (163)
T PF03446_consen 58 -ADVVILCVPDD-DAVEAVLFGENILAGLRPGKIIIDMSTI 96 (163)
T ss_dssp -BSEEEE-SSSH-HHHHHHHHCTTHGGGS-TTEEEEE-SS-
T ss_pred -ccceEeecccc-hhhhhhhhhhHHhhccccceEEEecCCc
Confidence 57776432211 223444444 322 3344555555543
No 217
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=79.19 E-value=3.9 Score=32.75 Aligned_cols=35 Identities=26% Similarity=0.468 Sum_probs=29.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccc
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIV 379 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~ 379 (461)
|++|+|+|..|+-+|..+... | +++.++++..-+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~-----g-------~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL-----G-------KEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-----T-------SEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh-----C-------cEEEEEeccchhh
Confidence 789999999999999988542 4 5889999887666
No 218
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=78.99 E-value=9.6 Score=40.52 Aligned_cols=88 Identities=19% Similarity=0.256 Sum_probs=52.0
Q ss_pred HHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhcc--
Q 012553 318 VVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-- 395 (461)
Q Consensus 318 ll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~-- 395 (461)
+..++.-..+.++..|++|+|.+.-.+++++.|.+. .|+.. ..+-+. +.++ +.+.+.-+.+..
T Consensus 277 ~~~~l~~~~~~l~Gkrvai~g~~~~~~~la~~L~ee----lGm~~-------v~v~t~---~~~~-~~~~~~~~~l~~~~ 341 (427)
T PRK02842 277 ARKALEPYRELLRGKRVFFLPDSQLEIPLARFLSRE----CGMEL-------VEVGTP---YLNR-RFLAAELALLPDGV 341 (427)
T ss_pred HHHHHHHhhhhcCCcEEEEECCchhHHHHHHHHHHh----CCCEE-------EEeCCC---CCCH-HHHHHHHHhccCCC
Confidence 345555666778888999999988899999998763 37632 222111 0111 101111111111
Q ss_pred ---ccCCCCCHHHhhcccCCcEEEeccC
Q 012553 396 ---EHEPVNNLLDAVKVIKPTILIGSSG 420 (461)
Q Consensus 396 ---~~~~~~~L~eaV~~vkptvLIG~S~ 420 (461)
+......+.+.|+..+||.+||-|.
T Consensus 342 ~v~~~~D~~~l~~~i~~~~pDllig~~~ 369 (427)
T PRK02842 342 RIVEGQDVERQLDRIRALRPDLVVCGLG 369 (427)
T ss_pred EEEECCCHHHHHHHHHHcCCCEEEccCc
Confidence 1112234688999999999999874
No 219
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=78.91 E-value=4.7 Score=40.64 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=26.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
.||.|+|+|..|..+|..+..+ | .+++++|+.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~-----G-------~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAA-----G-------ADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----C-------CcEEEEecH
Confidence 4799999999999999998763 4 368888874
No 220
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=78.40 E-value=2 Score=45.27 Aligned_cols=102 Identities=15% Similarity=0.151 Sum_probs=64.4
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCc--------CCCChhhhhhccc--
Q 012553 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK--------DSLQHFKKPWAHE-- 396 (461)
Q Consensus 327 ~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~--------~~L~~~k~~fA~~-- 396 (461)
++|++.||+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+= |..+.- +++-..|..-|..
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~-----Gv------g~i~lvD~D~-ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l 105 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAA-----GV------GTLGIVEFDV-VDESNLQRQVIHGQSDVGRSKAQSARDSI 105 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCCE-ecCcccccccccChhcCCChHHHHHHHHH
Confidence 678899999999999999999999865 64 6899999762 222110 0111122222211
Q ss_pred --cC----------CC--CCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEE
Q 012553 397 --HE----------PV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQAL 444 (461)
Q Consensus 397 --~~----------~~--~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~ 444 (461)
.. .. .++.+.++. .|++|-++... =+.-++..++.....|.|++
T Consensus 106 ~~~np~v~i~~~~~~i~~~~~~~~~~~--~D~Vvd~~d~~--~~r~~ln~~~~~~~~p~v~~ 163 (392)
T PRK07878 106 VEINPLVNVRLHEFRLDPSNAVELFSQ--YDLILDGTDNF--ATRYLVNDAAVLAGKPYVWG 163 (392)
T ss_pred HHhCCCcEEEEEeccCChhHHHHHHhc--CCEEEECCCCH--HHHHHHHHHHHHcCCCEEEE
Confidence 00 11 234566665 89998766432 35556777877778998875
No 221
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=78.12 E-value=5.9 Score=41.20 Aligned_cols=107 Identities=18% Similarity=0.226 Sum_probs=68.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC-CccccCCcCCCChhhhhhc-ccc--CCCCCHHHhh
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWA-HEH--EPVNNLLDAV 407 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~-GLi~~~R~~~L~~~k~~fA-~~~--~~~~~L~eaV 407 (461)
.||.++|||..|...|-.|+. .++ -+.+.|+|-. +...-...| |.+.. .+. .+. ....+ .+.+
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~-----~~~-----~~el~LiDi~~~~~~G~a~D-L~~~~-~~~~~~~~i~~~~~-y~~~ 67 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLL-----QGL-----GSELVLIDINEEKAEGVALD-LSHAA-APLGSDVKITGDGD-YEDL 67 (313)
T ss_pred CeEEEECCChHHHHHHHHHhc-----ccc-----cceEEEEEcccccccchhcc-hhhcc-hhccCceEEecCCC-hhhh
Confidence 389999999999999988843 244 2479999987 221111112 32211 111 110 00023 4567
Q ss_pred cccCCcEEEeccCC---CC-----------CCCHHHHHHHhcCCCCcEEEEcCCCCchhh
Q 012553 408 KVIKPTILIGSSGV---GR-----------TFTKEVIEAMASFNEVVFQALLWLIRKFNF 453 (461)
Q Consensus 408 ~~vkptvLIG~S~~---~g-----------~Ft~evv~~Ma~~~erPIIF~Lsnp~~~~~ 453 (461)
++ +|+.|=+.+. +| .+-+++.+++++.+...||+-.+||-+.+-
T Consensus 68 ~~--aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD~~t 125 (313)
T COG0039 68 KG--ADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVDILT 125 (313)
T ss_pred cC--CCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHHHHH
Confidence 76 8888744433 34 245788899999999999999999988764
No 222
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=77.99 E-value=3.3 Score=38.94 Aligned_cols=31 Identities=35% Similarity=0.559 Sum_probs=24.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
+|.|+|||..|.|||-+++.+ |. ++.++|.+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-----G~-------~V~l~d~~ 31 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-----GY-------EVTLYDRS 31 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-----TS-------EEEEE-SS
T ss_pred CEEEEcCCHHHHHHHHHHHhC-----CC-------cEEEEECC
Confidence 689999999999999998764 54 78888874
No 223
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=77.88 E-value=4.9 Score=44.14 Aligned_cols=48 Identities=25% Similarity=0.426 Sum_probs=34.6
Q ss_pred HHHHHHHHH----------hCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 316 AGVVAALKL----------IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 316 Agll~Alk~----------~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
.|++.+++- .+..+++.+++|+|||.||.+|+..+.+ .| . +++++|+.
T Consensus 354 ~G~~~~l~~~~~~~~~~~~~~~~~~~k~vlIlGaGGagrAia~~L~~-----~G------~-~V~i~nR~ 411 (529)
T PLN02520 354 IGAISAIEDGLRASGSSPASGSPLAGKLFVVIGAGGAGKALAYGAKE-----KG------A-RVVIANRT 411 (529)
T ss_pred HHHHHHHHhhhcccccccccccCCCCCEEEEECCcHHHHHHHHHHHH-----CC------C-EEEEEcCC
Confidence 456666653 1446888999999999888888877764 25 2 78988873
No 224
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=77.71 E-value=2.6 Score=40.46 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=25.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
+++|+|||.||+..|..+.. .|. ++.++|+.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~-----~g~-------~v~lie~~ 32 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAAR-----ANL-------KTLIIEGM 32 (300)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CCC-------CEEEEecc
Confidence 68999999999999998754 253 58888864
No 225
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=77.68 E-value=3.7 Score=42.79 Aligned_cols=20 Identities=40% Similarity=0.664 Sum_probs=18.3
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 012553 333 RFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~ 352 (461)
||.|+|||+-|+++|..+..
T Consensus 1 kI~VIGaG~wGtALA~~la~ 20 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAE 20 (342)
T ss_pred CEEEECcCHHHHHHHHHHHH
Confidence 68999999999999999865
No 226
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=77.59 E-value=13 Score=37.38 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=26.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
.+|.|+|+|..|..+|..+... |. ..+++++|++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~-----g~-----~~~V~~~dr~ 40 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL-----GL-----AGEIVGADRS 40 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CC-----CcEEEEEECC
Confidence 6899999999999999988653 43 2368888874
No 227
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=77.43 E-value=11 Score=39.12 Aligned_cols=41 Identities=22% Similarity=0.347 Sum_probs=32.4
Q ss_pred HhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCC
Q 012553 324 LIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (461)
Q Consensus 324 ~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~G 376 (461)
..|..+...++-|+|.|..|..+|+.+. ++ |+ +|...|++.
T Consensus 139 ~~~~~l~gktvGIiG~GrIG~avA~r~~-~F----gm-------~v~y~~~~~ 179 (324)
T COG1052 139 LLGFDLRGKTLGIIGLGRIGQAVARRLK-GF----GM-------KVLYYDRSP 179 (324)
T ss_pred ccccCCCCCEEEEECCCHHHHHHHHHHh-cC----CC-------EEEEECCCC
Confidence 4456788999999999999999999987 53 54 566666654
No 228
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.21 E-value=5.2 Score=37.37 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=25.7
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 328 ~l~d~riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
++++.+++|.|| |..|..+++.+++ .|. +++++++.
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~-----~G~-------~V~~~~r~ 38 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAA-----EGA-------RVVVTDRN 38 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 467789999997 5667777777653 252 58888875
No 229
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=77.10 E-value=12 Score=37.52 Aligned_cols=94 Identities=14% Similarity=0.094 Sum_probs=57.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccc-cCCCCCHHHhhcccC
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVIK 411 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~-~~~~~~L~eaV~~vk 411 (461)
+|.|+|.|..|..+|+-+... |. +++++|+.. ++ .+. ++.. .....++.|+++..+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~-----g~-------~v~v~dr~~----~~---~~~----~~~~g~~~~~s~~~~~~~~~ 58 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRED-----GH-------EVVGYDVNQ----EA---VDV----AGKLGITARHSLEELVSKLE 58 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhC-----CC-------EEEEEECCH----HH---HHH----HHHCCCeecCCHHHHHHhCC
Confidence 689999999999999988653 43 577777631 11 111 1111 122357888887643
Q ss_pred -CcEEEeccCCCCCCCHHHHHHHhcC-CCCcEEEEcCCCCc
Q 012553 412 -PTILIGSSGVGRTFTKEVIEAMASF-NEVVFQALLWLIRK 450 (461)
Q Consensus 412 -ptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIF~Lsnp~~ 450 (461)
+|++|=+ .+.....+++++.+... .+..+|.=+|+.+.
T Consensus 59 ~advVi~~-vp~~~~~~~v~~~i~~~l~~g~ivid~st~~~ 98 (299)
T PRK12490 59 APRTIWVM-VPAGEVTESVIKDLYPLLSPGDIVVDGGNSRY 98 (299)
T ss_pred CCCEEEEE-ecCchHHHHHHHHHhccCCCCCEEEECCCCCc
Confidence 5666532 32334667777666543 35678888876543
No 230
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=77.07 E-value=2.4 Score=43.33 Aligned_cols=38 Identities=32% Similarity=0.438 Sum_probs=33.8
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 327 ~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
++|++.+|+++|+|..|.-||+.|+.+ |+ ++|.++|.+
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLala-----GV------g~itI~D~d 52 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLILA-----GV------KSVTLHDTK 52 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 468899999999999999999999875 64 799999987
No 231
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=76.81 E-value=3.5 Score=42.67 Aligned_cols=36 Identities=17% Similarity=0.295 Sum_probs=27.7
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 330 ~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
+..||||+|+|.||+..|+.|... |. .-+|.++|..
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~-----~~-----~~~I~li~~e 37 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQ-----GF-----TGELHLFSDE 37 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhh-----CC-----CCCEEEeCCC
Confidence 457899999999999999998653 42 2367777765
No 232
>PRK07340 ornithine cyclodeaminase; Validated
Probab=76.81 E-value=11 Score=38.28 Aligned_cols=80 Identities=8% Similarity=0.066 Sum_probs=50.3
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccccCC--CCCHHHh
Q 012553 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP--VNNLLDA 406 (461)
Q Consensus 329 l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~--~~~L~ea 406 (461)
....+++|+|+|..|...++.+... .+ .++|+++|+. ..+ ...+...+...... ..++.|+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~----~~------~~~v~v~~r~----~~~---a~~~a~~~~~~~~~~~~~~~~~a 185 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAG----LP------VRRVWVRGRT----AAS---AAAFCAHARALGPTAEPLDGEAI 185 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHh----CC------CCEEEEEcCC----HHH---HHHHHHHHHhcCCeeEECCHHHH
Confidence 3567999999999999988887653 23 2578888873 221 22222222211111 3578999
Q ss_pred hcccCCcEEEeccCCC-CCCCH
Q 012553 407 VKVIKPTILIGSSGVG-RTFTK 427 (461)
Q Consensus 407 V~~vkptvLIG~S~~~-g~Ft~ 427 (461)
++. .|++|-++... .+|+.
T Consensus 186 v~~--aDiVitaT~s~~Pl~~~ 205 (304)
T PRK07340 186 PEA--VDLVVTATTSRTPVYPE 205 (304)
T ss_pred hhc--CCEEEEccCCCCceeCc
Confidence 986 99999876433 35544
No 233
>PRK06270 homoserine dehydrogenase; Provisional
Probab=76.09 E-value=23 Score=36.64 Aligned_cols=105 Identities=15% Similarity=0.194 Sum_probs=63.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHH---HHHhcCCChhhccceEEEEcCCCccccCCcCCCChhh-hhhccccC---------
Q 012553 332 HRFLFLGAGEAGTGIAELIALE---ISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK-KPWAHEHE--------- 398 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~---m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k-~~fA~~~~--------- 398 (461)
.||.++|.|..|.+.+++|... +.++.|+. .+=.-++|++|.+.+.+. ++..+ ..|+....
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~----~~vvai~d~~~~~~~~~G--i~~~~~~~~~~~~~~~~~~~~~~ 76 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLD----LKVVAIADSSGSAIDPDG--LDLELALKVKEETGKLADYPEGG 76 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCC----EEEEEEEeCCCcccCcCC--CCHHHHHHHHhccCCcccCcccc
Confidence 5899999999999999998652 22222331 122457899998887653 33211 22222211
Q ss_pred CCCCHHHhhcccCCcEEEeccCCC---CCCCHHHHHHHhcCCCCcEEE
Q 012553 399 PVNNLLDAVKVIKPTILIGSSGVG---RTFTKEVIEAMASFNEVVFQA 443 (461)
Q Consensus 399 ~~~~L~eaV~~vkptvLIG~S~~~---g~Ft~evv~~Ma~~~erPIIF 443 (461)
...++.|+++...+||+|=++... +-...++++..-+ +..+||.
T Consensus 77 ~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~-~GkhVVt 123 (341)
T PRK06270 77 GEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALE-RGKHVVT 123 (341)
T ss_pred ccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHH-CCCEEEc
Confidence 123789999877899999776532 2233455444333 2467776
No 234
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=75.91 E-value=8.1 Score=38.47 Aligned_cols=32 Identities=38% Similarity=0.605 Sum_probs=26.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
.+|.|+|+|..|.+||..++.+ | .+++++|.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~-----G-------~~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA-----G-------MDVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-----C-------CeEEEEeCC
Confidence 4799999999999999998764 5 368888853
No 235
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=75.88 E-value=4.7 Score=43.81 Aligned_cols=97 Identities=16% Similarity=0.090 Sum_probs=63.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhcc---ccCCCCCHHHhhcc
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---EHEPVNNLLDAVKV 409 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~---~~~~~~~L~eaV~~ 409 (461)
+|-|+|.|..|.++|..|... |. ++++.|+. .++ .++..+.-.. ......++.|+++.
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~~-----G~-------~V~v~dr~----~~~---~~~l~~~~~~~g~~i~~~~s~~e~v~~ 63 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIASR-----GF-------KISVYNRT----YEK---TEEFVKKAKEGNTRVKGYHTLEELVNS 63 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHHC-----CC-------eEEEEeCC----HHH---HHHHHHhhhhcCCcceecCCHHHHHhc
Confidence 689999999999999998753 53 58888762 221 2222111000 01134689999986
Q ss_pred c-CCcEEEeccCCCCCCCHHHHHHHhcC-CCCcEEEEcCCCC
Q 012553 410 I-KPTILIGSSGVGRTFTKEVIEAMASF-NEVVFQALLWLIR 449 (461)
Q Consensus 410 v-kptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIF~Lsnp~ 449 (461)
. +|+++| +...++..++++++.+... .+..||.=++|..
T Consensus 64 l~~~d~Ii-l~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~ 104 (470)
T PTZ00142 64 LKKPRKVI-LLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEW 104 (470)
T ss_pred CCCCCEEE-EEeCChHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 5 588555 3444556788888877653 4567888888864
No 236
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=75.76 E-value=12 Score=36.93 Aligned_cols=105 Identities=16% Similarity=0.127 Sum_probs=57.7
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcC--CCChhhhhhcc-c----cCCCCC
Q 012553 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD--SLQHFKKPWAH-E----HEPVNN 402 (461)
Q Consensus 330 ~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~--~L~~~k~~fA~-~----~~~~~~ 402 (461)
++.||.|+|+|.-|.+++.-|... |.- ..++++.+|++- .+.. ..++.+..... + .-+...
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~-----~~~---~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~D~Vilavkp~~ 69 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENS-----NII---GKENIYYHTPSK----KNTPFVYLQSNEELAKTCDIIVLAVKPDL 69 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhC-----CCC---CcceEEEECCCh----hcCCeEEeCChHHHHHhCCEEEEEeCHHH
Confidence 457899999999999999988753 321 134688888642 1100 01111100000 0 001123
Q ss_pred HHHhhcccC----CcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcCCCCc
Q 012553 403 LLDAVKVIK----PTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLWLIRK 450 (461)
Q Consensus 403 L~eaV~~vk----ptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Lsnp~~ 450 (461)
+.++++.++ ++. | +|-..| ++.+.++.+-. ..++++-.+.|...
T Consensus 70 ~~~vl~~i~~~l~~~~-i-IS~~aG-i~~~~l~~~~~-~~~~vvr~mPn~p~ 117 (260)
T PTZ00431 70 AGKVLLEIKPYLGSKL-L-ISICGG-LNLKTLEEMVG-VEAKIVRVMPNTPS 117 (260)
T ss_pred HHHHHHHHHhhccCCE-E-EEEeCC-ccHHHHHHHcC-CCCeEEEECCCchh
Confidence 444444443 333 3 565554 77888888753 34678888888653
No 237
>PLN02688 pyrroline-5-carboxylate reductase
Probab=75.30 E-value=13 Score=36.13 Aligned_cols=34 Identities=29% Similarity=0.398 Sum_probs=25.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEE-cC
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV-DS 374 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lv-Ds 374 (461)
||.|+|.|..|.++|+-|++. |.- -..+|+++ |+
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~-----g~~---~~~~i~v~~~r 36 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVAS-----GVV---PPSRISTADDS 36 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHC-----CCC---CcceEEEEeCC
Confidence 689999999999999998753 420 12367877 54
No 238
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=75.09 E-value=3.3 Score=43.19 Aligned_cols=20 Identities=40% Similarity=0.596 Sum_probs=18.1
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 012553 333 RFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~ 352 (461)
+|+|+|||.||...|..+..
T Consensus 2 ~VvIVGaGPAG~~aA~~la~ 21 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLAS 21 (398)
T ss_pred eEEEECCcHHHHHHHHHHHh
Confidence 68999999999999988765
No 239
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=74.44 E-value=2.1 Score=44.01 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=19.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 012553 332 HRFLFLGAGEAGTGIAELIALE 353 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~ 353 (461)
.+|+|+|||-||+..|..|.++
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~ 22 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKK 22 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHh
Confidence 4799999999999999998764
No 240
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=74.43 E-value=3.9 Score=42.26 Aligned_cols=35 Identities=29% Similarity=0.408 Sum_probs=26.7
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCcc
Q 012553 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (461)
Q Consensus 334 iv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi 378 (461)
|+|+|||.||..+|..+.++ ..| .++.++|++--.
T Consensus 2 viIvGaGpAGlslA~~l~~~---~~g-------~~Vllid~~~~~ 36 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADA---RPG-------LSVLLIDPKPKP 36 (374)
T ss_pred EEEECCcHHHHHHHHHHHhc---CCC-------CEEEEEcCCccc
Confidence 78999999999999998443 123 478888886544
No 241
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=74.43 E-value=3.6 Score=42.33 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=17.7
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 012553 333 RFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~ 352 (461)
.|+|+|||.||...|..+.+
T Consensus 2 DVvIVGaGpAG~~aA~~La~ 21 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLAR 21 (388)
T ss_pred eEEEECCCHHHHHHHHHHHh
Confidence 48999999999999988765
No 242
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=74.08 E-value=8.3 Score=38.85 Aligned_cols=106 Identities=13% Similarity=0.052 Sum_probs=59.0
Q ss_pred cccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChh-hhhhcc-ccCCCCCHHH
Q 012553 329 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF-KKPWAH-EHEPVNNLLD 405 (461)
Q Consensus 329 l~d~riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~-k~~fA~-~~~~~~~L~e 405 (461)
++..+|+|.|| |-.|..+++.|++. | .+++.+|++.--.....+.+... +..+.. +.....++.+
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~-----G-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 69 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLEL-----G-------AEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRK 69 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHC-----C-------CEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHH
Confidence 34678999996 88888888888752 4 36777776521000000000000 001111 1122245778
Q ss_pred hhcccCCcEEEeccCCCCC----------------CCHHHHHHHhcCC-CCcEEEEcC
Q 012553 406 AVKVIKPTILIGSSGVGRT----------------FTKEVIEAMASFN-EVVFQALLW 446 (461)
Q Consensus 406 aV~~vkptvLIG~S~~~g~----------------Ft~evv~~Ma~~~-erPIIF~Ls 446 (461)
+++..+||++|=+.+.... .+..+++++.+.+ -+.+||.=|
T Consensus 70 ~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS 127 (349)
T TIGR02622 70 AIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS 127 (349)
T ss_pred HHhhcCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 8888889999977764311 1345567666544 457888643
No 243
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=74.05 E-value=12 Score=37.35 Aligned_cols=36 Identities=25% Similarity=0.317 Sum_probs=26.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
++|.|+|+|..|.++|..+... |.. ...+++++|++
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~-----g~~---~~~~V~~~~r~ 37 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLET-----EVA---TPEEIILYSSS 37 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CCC---CcccEEEEeCC
Confidence 4799999999999999988653 410 13467777763
No 244
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=73.95 E-value=8 Score=42.01 Aligned_cols=97 Identities=10% Similarity=0.046 Sum_probs=62.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccc--cCCCCCHHHhhccc
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE--HEPVNNLLDAVKVI 410 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~--~~~~~~L~eaV~~v 410 (461)
.|-|+|.|..|.++|..|... |. ++++.|+. .. ..+...+.+... .....++.|+++..
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~-----G~-------~V~v~drt----~~---~~~~l~~~~~~g~~~~~~~s~~e~v~~l 61 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH-----GF-------TVSVYNRT----PE---KTDEFLAEHAKGKKIVGAYSIEEFVQSL 61 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc-----CC-------eEEEEeCC----HH---HHHHHHhhccCCCCceecCCHHHHHhhc
Confidence 378999999999999998753 53 57777763 11 122222221110 11235788888654
Q ss_pred -CCcEEEeccCCCCCCCHHHHHHHhcC-CCCcEEEEcCCCC
Q 012553 411 -KPTILIGSSGVGRTFTKEVIEAMASF-NEVVFQALLWLIR 449 (461)
Q Consensus 411 -kptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIF~Lsnp~ 449 (461)
+|+++| ++.+++..++++++.+..+ .+..||.=++|..
T Consensus 62 ~~~dvIi-l~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~ 101 (467)
T TIGR00873 62 ERPRKIM-LMVKAGAPVDAVINQLLPLLEKGDIIIDGGNSH 101 (467)
T ss_pred CCCCEEE-EECCCcHHHHHHHHHHHhhCCCCCEEEECCCcC
Confidence 588666 4444557788898888764 4677899898843
No 245
>PRK06153 hypothetical protein; Provisional
Probab=73.91 E-value=2.9 Score=44.66 Aligned_cols=38 Identities=29% Similarity=0.508 Sum_probs=33.9
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 327 ~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
.+|++.||+|+|+|..|.-|+++|+.. |+ ++|.++|.+
T Consensus 172 ~kL~~~~VaIVG~GG~GS~Va~~LAR~-----GV------geI~LVD~D 209 (393)
T PRK06153 172 AKLEGQRIAIIGLGGTGSYILDLVAKT-----PV------REIHLFDGD 209 (393)
T ss_pred HHHhhCcEEEEcCCccHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 578899999999999999999999875 64 699999987
No 246
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=73.57 E-value=9.1 Score=39.05 Aligned_cols=84 Identities=17% Similarity=0.234 Sum_probs=54.5
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccc----cCCCCCHHH
Q 012553 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLLD 405 (461)
Q Consensus 330 ~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~----~~~~~~L~e 405 (461)
.-.++.|+|+|.-|..-++.+... .. -++|.+.|+. .+ +...+.+.+.+. .....+++|
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v----~~------i~~v~v~~r~----~~---~a~~f~~~~~~~~~~~v~~~~~~~e 178 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASV----YN------PKRIRVYSRN----FD---HARAFAERFSKEFGVDIRPVDNAEA 178 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc----CC------CCEEEEECCC----HH---HHHHHHHHHHHhcCCcEEEeCCHHH
Confidence 458999999999888877766553 12 3677777763 22 233333333322 122468999
Q ss_pred hhcccCCcEEEeccC-CCCCCCHHHHHH
Q 012553 406 AVKVIKPTILIGSSG-VGRTFTKEVIEA 432 (461)
Q Consensus 406 aV~~vkptvLIG~S~-~~g~Ft~evv~~ 432 (461)
+++. +||++-++. ....|..++++.
T Consensus 179 av~~--aDIV~taT~s~~P~~~~~~l~p 204 (301)
T PRK06407 179 ALRD--ADTITSITNSDTPIFNRKYLGD 204 (301)
T ss_pred HHhc--CCEEEEecCCCCcEecHHHcCC
Confidence 9988 999997643 234788888763
No 247
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=73.19 E-value=4.5 Score=40.04 Aligned_cols=98 Identities=18% Similarity=0.212 Sum_probs=57.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccC---Cc-----CCCChhhhhhcc----cc-C-
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS---RK-----DSLQHFKKPWAH----EH-E- 398 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~---R~-----~~L~~~k~~fA~----~~-~- 398 (461)
||+++|+|..|.-+++.|+.. |+ ++|.++|.+=+ ..+ |. +++-..|..-|. .. +
T Consensus 1 kVlvvG~GGlG~eilk~La~~-----Gv------g~i~ivD~D~V-e~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~ 68 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM-----GF------GQIHVIDMDTI-DVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPN 68 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCEE-cchhhccccCCChhhCChHHHHHHHHHHHHHCCC
Confidence 689999999999999999764 65 68999998733 221 10 111112222211 00 0
Q ss_pred --------CC---CCH-HHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcC
Q 012553 399 --------PV---NNL-LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLW 446 (461)
Q Consensus 399 --------~~---~~L-~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Ls 446 (461)
.. .++ .+-+++ .|++|..... .-+...+..++.....|+|.+=+
T Consensus 69 v~i~~~~~~i~~~~~~~~~f~~~--~DvVi~a~Dn--~~aR~~ln~~c~~~~iplI~~g~ 124 (234)
T cd01484 69 CKVVPYQNKVGPEQDFNDTFFEQ--FHIIVNALDN--IIARRYVNGMLIFLIVPLIESGT 124 (234)
T ss_pred CEEEEEeccCChhhhchHHHHhC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEcc
Confidence 01 111 234444 7877765442 33566777777777788887643
No 248
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=72.70 E-value=10 Score=38.16 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=20.5
Q ss_pred ccceEEEeCcchHHHHHHHHHHHH
Q 012553 330 AEHRFLFLGAGEAGTGIAELIALE 353 (461)
Q Consensus 330 ~d~riv~~GAGsAgiGiA~ll~~~ 353 (461)
...||.|+|||+-|..+|-.+.++
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~ 27 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARA 27 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHC
Confidence 456899999999999999888653
No 249
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=72.23 E-value=12 Score=35.15 Aligned_cols=35 Identities=31% Similarity=0.321 Sum_probs=25.3
Q ss_pred cccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 329 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 329 l~d~riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
+++.+++|.|| |..|..+|+.++. .|. ++++++++
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~-----~g~-------~v~~~~r~ 37 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAK-----EGA-------KVVIADLN 37 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHH-----CCC-------eEEEEeCC
Confidence 45678999996 7777778887754 252 68887764
No 250
>PRK07877 hypothetical protein; Provisional
Probab=72.22 E-value=7.7 Score=44.52 Aligned_cols=110 Identities=17% Similarity=0.079 Sum_probs=72.1
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccC--C----cCCCChhhhhhccc----
Q 012553 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS--R----KDSLQHFKKPWAHE---- 396 (461)
Q Consensus 327 ~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~--R----~~~L~~~k~~fA~~---- 396 (461)
.+|++.||+|+|+| .|..+|..|+.+ |+ ..+|.++|-+=+=..+ | ..++-..|..-|..
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~Lara-----Gv-----vG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~ 171 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLAAE-----GL-----CGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAE 171 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHHHc-----cC-----CCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHH
Confidence 56889999999999 899999888764 53 3689999987432111 1 01121222222211
Q ss_pred -cCC---------C--CCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcCCCCch
Q 012553 397 -HEP---------V--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLWLIRKF 451 (461)
Q Consensus 397 -~~~---------~--~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Lsnp~~~ 451 (461)
.+. + .++.+.+++ .|++|-++-. .=++-+|...|.....|+|++.+--.++
T Consensus 172 inp~i~v~~~~~~i~~~n~~~~l~~--~DlVvD~~D~--~~~R~~ln~~a~~~~iP~i~~~~~~g~~ 234 (722)
T PRK07877 172 LDPYLPVEVFTDGLTEDNVDAFLDG--LDVVVEECDS--LDVKVLLREAARARRIPVLMATSDRGLL 234 (722)
T ss_pred HCCCCEEEEEeccCCHHHHHHHhcC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEcCCCCCc
Confidence 111 1 257777776 8999887752 3477788888888999999999755555
No 251
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=72.17 E-value=4.9 Score=43.24 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.3
Q ss_pred CcccceEEEeCcchHHHHHHHHHHH
Q 012553 328 TLAEHRFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 328 ~l~d~riv~~GAGsAgiGiA~ll~~ 352 (461)
+....+|+|+|||+||+..|..+.+
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~ 31 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRR 31 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHh
Confidence 3456789999999999999998865
No 252
>PRK06847 hypothetical protein; Provisional
Probab=71.81 E-value=4.9 Score=40.46 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.4
Q ss_pred cceEEEeCcchHHHHHHHHHHH
Q 012553 331 EHRFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 331 d~riv~~GAGsAgiGiA~ll~~ 352 (461)
..+|+|+|||.||+..|..+..
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~ 25 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRR 25 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHh
Confidence 4589999999999999998865
No 253
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=71.70 E-value=15 Score=37.98 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=22.0
Q ss_pred cccceEEEeCcchHHHHHHHHHHHH
Q 012553 329 LAEHRFLFLGAGEAGTGIAELIALE 353 (461)
Q Consensus 329 l~d~riv~~GAGsAgiGiA~ll~~~ 353 (461)
|++.+|.|+|+|..|-++|..+...
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~s 25 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDS 25 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHC
Confidence 5688999999999999999998753
No 254
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=71.68 E-value=13 Score=42.30 Aligned_cols=43 Identities=5% Similarity=0.000 Sum_probs=29.2
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcCCCCchh
Q 012553 408 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLWLIRKFN 452 (461)
Q Consensus 408 ~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Lsnp~~~~ 452 (461)
+.++|+++|..++.. +.-.-+.+..++-+|=|.+=+.||-.++
T Consensus 416 ~~~~~~~ilasNTSs--l~i~~la~~~~~p~r~~g~Hff~P~~~~ 458 (715)
T PRK11730 416 QKVREDTILASNTST--ISISLLAKALKRPENFCGMHFFNPVHRM 458 (715)
T ss_pred hhCCCCcEEEEcCCC--CCHHHHHhhcCCCccEEEEecCCccccc
Confidence 445799999877654 5544444444556666888999997554
No 255
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=71.68 E-value=5 Score=41.64 Aligned_cols=32 Identities=34% Similarity=0.475 Sum_probs=28.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
||+++|||.-|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~a-----GV------g~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW-----GV------RHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 689999999999999999875 64 699999986
No 256
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=71.68 E-value=11 Score=36.66 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=24.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcC
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs 374 (461)
||.|+|+|..|.++++-|... |.. .+.+++.|+
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~-----g~~----~~~i~v~~r 34 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTS-----PAD----VSEIIVSPR 34 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhC-----CCC----hheEEEECC
Confidence 689999999999999988653 532 345666665
No 257
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=71.64 E-value=14 Score=40.10 Aligned_cols=119 Identities=10% Similarity=-0.103 Sum_probs=69.5
Q ss_pred cceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccccCCCCCHHHhhcc
Q 012553 331 EHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 409 (461)
Q Consensus 331 d~riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~ 409 (461)
=.||.|+|| |..|..+|-.|+..=+ .|.... -...+.++|.+-=...+-.-.|.+-.-++..+..-..+-.+..++
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v--~g~~~~-i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kd 176 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEV--FGPDQP-IALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQD 176 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccc--ccCCCC-cccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCc
Confidence 379999999 9999999998765200 111101 124788888742111111001222222222211101234566777
Q ss_pred cCCcEEEeccCCC---CC-----------CCHHHHHHHhc-CCCCcEEEEcCCCCchhhh
Q 012553 410 IKPTILIGSSGVG---RT-----------FTKEVIEAMAS-FNEVVFQALLWLIRKFNFC 454 (461)
Q Consensus 410 vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~-~~erPIIF~Lsnp~~~~~~ 454 (461)
.|++|=+.+.+ |- +=+++.+.+.+ .+..-||+-.+||-+.+--
T Consensus 177 --aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~ 234 (444)
T PLN00112 177 --AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNAL 234 (444)
T ss_pred --CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHH
Confidence 89998666553 21 22567788888 5899999999999877643
No 258
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=71.43 E-value=5.7 Score=43.08 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=25.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcC
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs 374 (461)
.||.|+|+|..|.+||..++.+ |. ++.++|.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~-----G~-------~V~v~D~ 35 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA-----GI-------DVAVFDP 35 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeC
Confidence 4799999999999999998763 54 5666665
No 259
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=71.28 E-value=8.8 Score=32.89 Aligned_cols=88 Identities=11% Similarity=0.134 Sum_probs=50.6
Q ss_pred CcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccccCCCCCHHHhhcccCCcEEEe
Q 012553 338 GAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIG 417 (461)
Q Consensus 338 GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vkptvLIG 417 (461)
|.|..|.+++++|...-.. + --+=+.++|+++++... +...........++.+.++..++|++|=
T Consensus 1 G~G~VG~~l~~~l~~~~~~---~----~~~v~~v~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~dvvVE 65 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQER---I----DLEVVGVADRSMLISKD--------WAASFPDEAFTTDLEELIDDPDIDVVVE 65 (117)
T ss_dssp --SHHHHHHHHHHHHTHHH---C----EEEEEEEEESSEEEETT--------HHHHHTHSCEESSHHHHHTHTT-SEEEE
T ss_pred CCCHHHHHHHHHHHhCccc---C----CEEEEEEEECCchhhhh--------hhhhcccccccCCHHHHhcCcCCCEEEE
Confidence 8899999999999764111 0 12446778887444433 1111122233468999999778999999
Q ss_pred ccCCCCCCCHHHHHHHhcCCCCcEEE
Q 012553 418 SSGVGRTFTKEVIEAMASFNEVVFQA 443 (461)
Q Consensus 418 ~S~~~g~Ft~evv~~Ma~~~erPIIF 443 (461)
+++. ...++-+.+.+.+ ..++|-
T Consensus 66 ~t~~-~~~~~~~~~~L~~--G~~VVt 88 (117)
T PF03447_consen 66 CTSS-EAVAEYYEKALER--GKHVVT 88 (117)
T ss_dssp -SSC-HHHHHHHHHHHHT--TCEEEE
T ss_pred CCCc-hHHHHHHHHHHHC--CCeEEE
Confidence 9554 3555555555543 455654
No 260
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=71.10 E-value=28 Score=36.34 Aligned_cols=136 Identities=18% Similarity=0.286 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhcCCCeeeeeecCCcccHHHHHHHHcCCCceecc---CCCchhHHHHHHHHHHHHHhCCCcccceEEEeC
Q 012553 262 LDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFND---DIQGTASVVLAGVVAALKLIGGTLAEHRFLFLG 338 (461)
Q Consensus 262 idefv~av~~~fGp~~lIq~EDf~~~~af~iL~ryr~~~~~FnD---DiQGTaaV~LAgll~Alk~~g~~l~d~riv~~G 338 (461)
+.+.+..+. +| .++++ +-.+.. .+.+.+.+| .++||+|- ..|=| =+||=++.-.+..|+++++.||+++|
T Consensus 91 l~DTarvls-~y-~D~iv-~R~~~~-~~~~~~a~~-~~vPVINa~~~~~HPt--QaL~Dl~Ti~e~~g~~l~gl~ia~vG 163 (334)
T PRK01713 91 MKDTARVLG-RM-YDAIE-YRGFKQ-SIVNELAEY-AGVPVFNGLTDEFHPT--QMLADVLTMIENCDKPLSEISYVYIG 163 (334)
T ss_pred HHHHHHHHH-Hh-CCEEE-EEcCch-HHHHHHHHh-CCCCEEECCCCCCChH--HHHHHHHHHHHHcCCCcCCcEEEEEC
Confidence 334444433 45 44433 333332 233333444 47899993 33333 45677776666677789999999999
Q ss_pred cchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhcccc----CCCCCHHHhhcccCCcE
Q 012553 339 AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH----EPVNNLLDAVKVIKPTI 414 (461)
Q Consensus 339 AGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~----~~~~~L~eaV~~vkptv 414 (461)
-+.- ++++-++.++.+ .|+ ++.++-.+++.-.. + .-+.-+.+++.. ....++.+++++ +||
T Consensus 164 D~~~--~v~~Sl~~~~~~-~g~-------~v~~~~P~~~~p~~--~-~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDv 228 (334)
T PRK01713 164 DARN--NMGNSLLLIGAK-LGM-------DVRICAPKALLPEA--S-LVEMCEKFAKESGARITVTDDIDKAVKG--VDF 228 (334)
T ss_pred CCcc--CHHHHHHHHHHH-cCC-------EEEEECCchhcCCH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCE
Confidence 8753 377766666655 464 68888888773321 1 111112333321 113689999998 999
Q ss_pred EEecc
Q 012553 415 LIGSS 419 (461)
Q Consensus 415 LIG~S 419 (461)
+.-.+
T Consensus 229 Vyt~~ 233 (334)
T PRK01713 229 VHTDV 233 (334)
T ss_pred EEEcc
Confidence 98753
No 261
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=71.04 E-value=5.5 Score=41.52 Aligned_cols=36 Identities=14% Similarity=0.252 Sum_probs=27.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCc
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GL 377 (461)
+||||+|||.||+..|..+... |- .-+|.++|++.-
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~-----~~-----~~~Vtli~~~~~ 36 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRL-----NK-----ELEITVYEKTDI 36 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHH-----CC-----CCcEEEEECCCc
Confidence 3899999999999999987542 21 137888888753
No 262
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=70.84 E-value=14 Score=39.72 Aligned_cols=103 Identities=23% Similarity=0.285 Sum_probs=76.4
Q ss_pred ccCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCc
Q 012553 304 NDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK 383 (461)
Q Consensus 304 nDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~ 383 (461)
.|.-.||+--++-|++.| |..=+....+|+.|=|--|-|||..+.. .| | ++++.+-
T Consensus 185 FDNrYGtgqS~~DgI~Ra---Tn~liaGK~vVV~GYG~vGrG~A~~~rg-----~G-----A--~ViVtEv--------- 240 (420)
T COG0499 185 FDNRYGTGQSLLDGILRA---TNVLLAGKNVVVAGYGWVGRGIAMRLRG-----MG-----A--RVIVTEV--------- 240 (420)
T ss_pred cccccccchhHHHHHHhh---hceeecCceEEEecccccchHHHHHhhc-----CC-----C--eEEEEec---------
Confidence 377799999999999854 5677889999999999999999987743 24 3 4443322
Q ss_pred CCCChhhhhhcc-ccCCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhc
Q 012553 384 DSLQHFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMAS 435 (461)
Q Consensus 384 ~~L~~~k~~fA~-~~~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~ 435 (461)
+|.+.-=|. +.=..-++.||++. .|+||-++|.-++++.|.++.|..
T Consensus 241 ---DPI~AleA~MdGf~V~~m~~Aa~~--gDifiT~TGnkdVi~~eh~~~MkD 288 (420)
T COG0499 241 ---DPIRALEAAMDGFRVMTMEEAAKT--GDIFVTATGNKDVIRKEHFEKMKD 288 (420)
T ss_pred ---CchHHHHHhhcCcEEEEhHHhhhc--CCEEEEccCCcCccCHHHHHhccC
Confidence 222211121 22223579999998 899999999999999999999975
No 263
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=70.70 E-value=5.4 Score=41.03 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=27.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCC
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~G 376 (461)
.+|+|+|||.+|..+|-.|.+. | .++.++|+.-
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-----g-------~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-----G-------YQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCCC
Confidence 4899999999999999988753 4 3789999864
No 264
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=70.54 E-value=5.4 Score=40.93 Aligned_cols=32 Identities=28% Similarity=0.524 Sum_probs=28.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
||+++|||.-|.-+++.|+.. |+ ++|.++|.+
T Consensus 1 kVlVVGaGGlG~eilknLal~-----Gv------g~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALS-----GF------RNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 689999999999999999875 75 699999987
No 265
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=70.34 E-value=5.6 Score=41.32 Aligned_cols=36 Identities=19% Similarity=0.260 Sum_probs=27.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccc
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIV 379 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~ 379 (461)
--|+|+|||.||...|..+.+. |+ ++.++|++..+-
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~-----G~-------~VlvlEk~~~~G 39 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKA-----GL-------DVLVLEKGSEPG 39 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHc-----CC-------eEEEEecCCCCC
Confidence 4689999999999999998764 64 577777765543
No 266
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=70.07 E-value=5.1 Score=36.32 Aligned_cols=36 Identities=17% Similarity=0.311 Sum_probs=28.0
Q ss_pred EEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCc
Q 012553 335 LFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (461)
Q Consensus 335 v~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GL 377 (461)
+|+|+|.+|+++++.|+... .....-+|.++|.++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~-------~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA-------DPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc-------CCCCCCEEEEEcCCCc
Confidence 48999999999999998763 1123568999999655
No 267
>PRK08163 salicylate hydroxylase; Provisional
Probab=69.92 E-value=5.5 Score=40.53 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.3
Q ss_pred cceEEEeCcchHHHHHHHHHHH
Q 012553 331 EHRFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 331 d~riv~~GAGsAgiGiA~ll~~ 352 (461)
..+|+|+|||.||+..|-.|..
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~ 25 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALAR 25 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHh
Confidence 4689999999999999988765
No 268
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=69.83 E-value=17 Score=38.05 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=22.2
Q ss_pred CcccceEEEeCcchHHHHHHHHHHH
Q 012553 328 TLAEHRFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 328 ~l~d~riv~~GAGsAgiGiA~ll~~ 352 (461)
.|++.+|.|+|.|+.|.++|..|..
T Consensus 14 ~L~gktIgIIG~GsmG~AlA~~L~~ 38 (330)
T PRK05479 14 LIKGKKVAIIGYGSQGHAHALNLRD 38 (330)
T ss_pred hhCCCEEEEEeeHHHHHHHHHHHHH
Confidence 4678899999999999999999865
No 269
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=69.83 E-value=21 Score=40.58 Aligned_cols=153 Identities=14% Similarity=0.139 Sum_probs=86.2
Q ss_pred hhhHHHHHHHHHHHHH-hcCCCeeeeeecCCcc----cHHHHHHHHcCCCceeccCCCchhHHHHHHHHHHHHHhCCCcc
Q 012553 256 QEYAELLDEFMSAVKQ-NYGEKVLIQFEDFANH----NAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLA 330 (461)
Q Consensus 256 ~~Y~~~idefv~av~~-~fGp~~lIq~EDf~~~----~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~ 330 (461)
+.|.+.|.|.++++.+ .| .||.+.. =--.+++||..+|=-|.-... .++.|.. ..+
T Consensus 68 ~~y~~~V~Eli~~L~~nGF-------VrDv~~~~p~~L~~a~lERYaaqI~F~~~fs~----------s~~~rF~--~qR 128 (637)
T TIGR03693 68 APYQKRVFEIGEILYKNGF-------VRDVSQDAPHELESALLDRYAAQIEFIEADAD----------SGALKFE--LSR 128 (637)
T ss_pred HHHHHHHHHHHHHHHhCCc-------eeecccccCCCCCHHHHHHHHHHHHHHHHhcc----------Cchhhhh--hhh
Confidence 3454545555555544 33 4665422 123478999876655543321 1222222 228
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccc-----------cCC
Q 012553 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-----------HEP 399 (461)
Q Consensus 331 d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~-----------~~~ 399 (461)
+.||+++|.|.-|..+.-.|+. .|+ .+|..+|.+=..+ +.. .+.+. ..-|++ ...
T Consensus 129 ~akVlVlG~Gg~~s~lv~sL~~-----sG~------~~I~~vd~D~v~S-Nln-RIgEl-~e~A~~~n~~v~v~~i~~~~ 194 (637)
T TIGR03693 129 NAKILAAGSGDFLTKLVRSLID-----SGF------PRFHAIVTDAEEH-ALD-RIHEL-AEIAEETDDALLVQEIDFAE 194 (637)
T ss_pred cccEEEEecCchHHHHHHHHHh-----cCC------CcEEEEeccccch-hhh-HHHHH-HHHHHHhCCCCceEeccCCc
Confidence 9999999999988888777654 375 5888887664422 111 01122 233332 112
Q ss_pred CCCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEE
Q 012553 400 VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQA 443 (461)
Q Consensus 400 ~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 443 (461)
..++.++++. .|++|=+|..+-.---.++.+-+.-..+|.|-
T Consensus 195 ~~dl~ev~~~--~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IP 236 (637)
T TIGR03693 195 DQHLHEAFEP--ADWVLYVSDNGDIDDLHALHAFCKEEGKGFIP 236 (637)
T ss_pred chhHHHhhcC--CcEEEEECCCCChHHHHHHHHHHHHcCCCeEE
Confidence 3579999988 79999988866333334444444444555543
No 270
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=69.73 E-value=18 Score=34.79 Aligned_cols=59 Identities=22% Similarity=0.433 Sum_probs=41.3
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccccCCCCCHHHhhcccC
Q 012553 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (461)
Q Consensus 333 riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vk 411 (461)
||+|.|| |-.|..+++.+.+. | .+++.+++. ..| +. ...++.++++..+
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~-----g-------~~v~~~~r~------~~d-~~-----------~~~~~~~~~~~~~ 50 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPE-----G-------RVVVALTSS------QLD-LT-----------DPEALERLLRAIR 50 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhc-----C-------CEEEEeCCc------ccC-CC-----------CHHHHHHHHHhCC
Confidence 5889997 99999998888652 4 367777763 111 21 1235778888888
Q ss_pred CcEEEeccCC
Q 012553 412 PTILIGSSGV 421 (461)
Q Consensus 412 ptvLIG~S~~ 421 (461)
||++|=+++.
T Consensus 51 ~d~vi~~a~~ 60 (287)
T TIGR01214 51 PDAVVNTAAY 60 (287)
T ss_pred CCEEEECCcc
Confidence 9999987764
No 271
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=69.71 E-value=5.5 Score=39.49 Aligned_cols=34 Identities=26% Similarity=0.363 Sum_probs=25.9
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 330 ~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
.+..|+|+|||.||+..|-.+.. .|+ ++.++|++
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~-----~G~-------~V~liEk~ 57 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAK-----AGL-------KVAVFERK 57 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHh-----CCC-------eEEEEecC
Confidence 35679999999999999987754 254 57777765
No 272
>PRK06184 hypothetical protein; Provisional
Probab=69.65 E-value=5.6 Score=42.51 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=26.3
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 330 ~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
++..|+|+|||.||+..|-.|.. .|+ ++.++|+.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~-----~Gi-------~v~viE~~ 35 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELAR-----RGV-------SFRLIEKA 35 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEeCC
Confidence 45689999999999999988865 365 46666664
No 273
>PRK08618 ornithine cyclodeaminase; Validated
Probab=69.57 E-value=11 Score=38.51 Aligned_cols=81 Identities=14% Similarity=0.229 Sum_probs=49.3
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccc----cCCCCCHHH
Q 012553 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLLD 405 (461)
Q Consensus 330 ~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~----~~~~~~L~e 405 (461)
...+++|+|+|..|-.++..+... .+ .++|.++|+. ..| ...+.+.+... .....++++
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~----~~------~~~v~v~~r~----~~~---a~~~~~~~~~~~~~~~~~~~~~~~ 188 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAV----RD------IERVRVYSRT----FEK---AYAFAQEIQSKFNTEIYVVNSADE 188 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc----CC------ccEEEEECCC----HHH---HHHHHHHHHHhcCCcEEEeCCHHH
Confidence 456899999999998887665432 23 3688888874 222 22222222211 112467899
Q ss_pred hhcccCCcEEEeccCCC-CCCCHHHH
Q 012553 406 AVKVIKPTILIGSSGVG-RTFTKEVI 430 (461)
Q Consensus 406 aV~~vkptvLIG~S~~~-g~Ft~evv 430 (461)
+++. .|++|-++..+ ..|+ +++
T Consensus 189 ~~~~--aDiVi~aT~s~~p~i~-~~l 211 (325)
T PRK08618 189 AIEE--ADIIVTVTNAKTPVFS-EKL 211 (325)
T ss_pred HHhc--CCEEEEccCCCCcchH-Hhc
Confidence 9986 89998765433 2455 554
No 274
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=69.47 E-value=4 Score=41.36 Aligned_cols=32 Identities=34% Similarity=0.614 Sum_probs=26.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
..|-|+|||-.|.|||+..+.+ |+ ++|++|+.
T Consensus 12 ~~V~ivGaG~MGSGIAQv~a~s-----g~-------~V~l~d~~ 43 (298)
T KOG2304|consen 12 KNVAIVGAGQMGSGIAQVAATS-----GL-------NVWLVDAN 43 (298)
T ss_pred cceEEEcccccchhHHHHHHhc-----CC-------ceEEecCC
Confidence 4678999999999999988764 65 79999984
No 275
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=69.37 E-value=9 Score=41.91 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=28.2
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 328 ~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
+-...+|+|+|||.||+..|..+.. .|. +++++|+.
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~-----~G~-------~V~v~e~~ 169 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRR-----MGH-------AVTIFEAG 169 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecC
Confidence 3457899999999999999987754 253 58889864
No 276
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=69.28 E-value=7.3 Score=37.87 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=27.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCc
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GL 377 (461)
.|+|+|||-+|+.+|-.|.+ .| .++.++|+..+
T Consensus 1 DvvIIGaGi~G~~~A~~La~-----~G-------~~V~l~e~~~~ 33 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR-----RG-------HSVTLLERGDI 33 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH-----TT-------SEEEEEESSST
T ss_pred CEEEECcCHHHHHHHHHHHH-----CC-------CeEEEEeeccc
Confidence 48999999999999998876 25 38999999833
No 277
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=69.22 E-value=5.2 Score=40.98 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=19.6
Q ss_pred cceEEEeCcchHHHHHHHHHHH
Q 012553 331 EHRFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 331 d~riv~~GAGsAgiGiA~ll~~ 352 (461)
+.+|+|+|||.||+..|-.|.+
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~ 39 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKD 39 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhc
Confidence 4689999999999999998865
No 278
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=69.18 E-value=5.5 Score=40.49 Aligned_cols=19 Identities=37% Similarity=0.508 Sum_probs=16.5
Q ss_pred EEEeCcchHHHHHHHHHHH
Q 012553 334 FLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 334 iv~~GAGsAgiGiA~ll~~ 352 (461)
|+|+|||.||+.+|..+.+
T Consensus 2 viIiGaG~AGl~~A~~la~ 20 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELAR 20 (388)
T ss_pred EEEECCCHHHHHHHHHHHh
Confidence 7899999999999977653
No 279
>PRK07236 hypothetical protein; Provisional
Probab=68.94 E-value=6.7 Score=40.16 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.0
Q ss_pred cccceEEEeCcchHHHHHHHHHHH
Q 012553 329 LAEHRFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 329 l~d~riv~~GAGsAgiGiA~ll~~ 352 (461)
....+|+|+|||.||+..|..|.+
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~ 27 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRR 27 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHh
Confidence 345789999999999999999876
No 280
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=68.79 E-value=7 Score=37.56 Aligned_cols=35 Identities=17% Similarity=0.298 Sum_probs=28.7
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcC
Q 012553 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (461)
Q Consensus 328 ~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs 374 (461)
+|++.++||+|+|..|.-.|+.|..+ | .+|++++.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~-----g-------a~V~VIs~ 41 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKY-----G-------AHIVVISP 41 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEcC
Confidence 47899999999999999998888763 3 37888764
No 281
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=68.54 E-value=3.4 Score=41.80 Aligned_cols=37 Identities=11% Similarity=0.269 Sum_probs=27.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCcc
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi 378 (461)
+|||+|+|.||+..|+.+.... . ..-+|.++|++.-.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~----~-----~~~~I~li~~~~~~ 37 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKP----L-----PGVRVTLINPSSTT 37 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcC----C-----CCCEEEEECCCCCC
Confidence 5899999999999998875421 0 13489999987543
No 282
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=68.26 E-value=19 Score=37.43 Aligned_cols=112 Identities=15% Similarity=0.202 Sum_probs=69.3
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCc-cccCCcCCCChhhhhhccccCC--CCCH
Q 012553 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL-IVSSRKDSLQHFKKPWAHEHEP--VNNL 403 (461)
Q Consensus 327 ~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GL-i~~~R~~~L~~~k~~fA~~~~~--~~~L 403 (461)
++.+..||.++|+|..|++||-.|+.. |++ +++.++|-.== +--...| |+ |-.+|-+...- .++.
T Consensus 16 ~~~~~~KItVVG~G~VGmAca~siL~k-----~La-----del~lvDv~~dklkGE~MD-Lq-H~s~f~~~~~V~~~~Dy 83 (332)
T KOG1495|consen 16 KEFKHNKITVVGVGQVGMACAISILLK-----GLA-----DELVLVDVNEDKLKGEMMD-LQ-HGSAFLSTPNVVASKDY 83 (332)
T ss_pred ccccCceEEEEccchHHHHHHHHHHHh-----hhh-----hceEEEecCcchhhhhhhh-hc-cccccccCCceEecCcc
Confidence 456678999999999999999988763 663 67889996421 1111122 32 33445443211 1222
Q ss_pred HHhhcccCCcEEEeccCCCCC--------------CCHHHHHHHhcCCCCcEEEEcCCCCchhh
Q 012553 404 LDAVKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEVVFQALLWLIRKFNF 453 (461)
Q Consensus 404 ~eaV~~vkptvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIF~Lsnp~~~~~ 453 (461)
.. -+ ..++.|=+.+..+. +=+.+|.++.++...-|++--|||-..+.
T Consensus 84 ~~-sa--~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDilT 144 (332)
T KOG1495|consen 84 SV-SA--NSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDILT 144 (332)
T ss_pred cc-cC--CCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHHHH
Confidence 22 12 25566644443322 23567888889999999999999976654
No 283
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=68.23 E-value=16 Score=35.67 Aligned_cols=47 Identities=36% Similarity=0.462 Sum_probs=30.2
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcC
Q 012553 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (461)
Q Consensus 316 Agll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs 374 (461)
+..+.|++..+. ..+.+++|+|+|+.|...+.+.. + .|. ++++.+|+
T Consensus 107 ~ta~~al~~~~~-~~g~~VlV~G~G~vG~~~~~~ak-~----~G~------~~Vi~~~~ 153 (280)
T TIGR03366 107 ATVMAALEAAGD-LKGRRVLVVGAGMLGLTAAAAAA-A----AGA------ARVVAADP 153 (280)
T ss_pred HHHHHHHHhccC-CCCCEEEEECCCHHHHHHHHHHH-H----cCC------CEEEEECC
Confidence 334556655544 37889999999987776655443 2 353 46887764
No 284
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=67.79 E-value=7.2 Score=40.37 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=28.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCC
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~G 376 (461)
||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+=
T Consensus 1 kVlIVGaGGlG~EiaKnLal~-----Gv------g~ItIvD~D~ 33 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLT-----GF------GEIHIIDLDT 33 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHh-----cC------CeEEEEcCCC
Confidence 689999999999999999865 64 7999999863
No 285
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=67.68 E-value=7.8 Score=35.82 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=23.2
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHH
Q 012553 328 TLAEHRFLFLGAGEAGTGIAELIALE 353 (461)
Q Consensus 328 ~l~d~riv~~GAGsAgiGiA~ll~~~ 353 (461)
+|++.++||+|+|..|.-.++.|+++
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ 35 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDT 35 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhC
Confidence 57899999999999999999988764
No 286
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=67.55 E-value=9.4 Score=40.04 Aligned_cols=83 Identities=19% Similarity=0.306 Sum_probs=51.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCc--cccCCcCCCChhhhhhccc---cCC---CCCH
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL--IVSSRKDSLQHFKKPWAHE---HEP---VNNL 403 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GL--i~~~R~~~L~~~k~~fA~~---~~~---~~~L 403 (461)
++|.|+|||+=|+++|..+.+. |- .=++|..|.+=. |..+|. ..+|... ++. ..+|
T Consensus 2 ~kI~ViGaGswGTALA~~la~n-----g~-----~V~lw~r~~~~~~~i~~~~~------N~~yLp~i~lp~~l~at~Dl 65 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARN-----GH-----EVRLWGRDEEIVAEINETRE------NPKYLPGILLPPNLKATTDL 65 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhc-----CC-----eeEEEecCHHHHHHHHhcCc------CccccCCccCCcccccccCH
Confidence 5899999999999999999764 41 236787764311 112221 1122221 111 3579
Q ss_pred HHhhcccCCc-EEEeccCCCCCCCHHHHHHHhc
Q 012553 404 LDAVKVIKPT-ILIGSSGVGRTFTKEVIEAMAS 435 (461)
Q Consensus 404 ~eaV~~vkpt-vLIG~S~~~g~Ft~evv~~Ma~ 435 (461)
.++++. .| +++++++ .+..++++.|..
T Consensus 66 ~~a~~~--ad~iv~avPs---~~~r~v~~~l~~ 93 (329)
T COG0240 66 AEALDG--ADIIVIAVPS---QALREVLRQLKP 93 (329)
T ss_pred HHHHhc--CCEEEEECCh---HHHHHHHHHHhh
Confidence 999987 45 4556655 467888888863
No 287
>PRK06475 salicylate hydroxylase; Provisional
Probab=67.43 E-value=5.9 Score=40.83 Aligned_cols=21 Identities=38% Similarity=0.322 Sum_probs=18.8
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 012553 332 HRFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~ 352 (461)
+||+|+|||.||+..|-.|.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~ 23 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA 23 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh
Confidence 799999999999999987754
No 288
>PRK09126 hypothetical protein; Provisional
Probab=67.18 E-value=6.6 Score=39.91 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.2
Q ss_pred cceEEEeCcchHHHHHHHHHHH
Q 012553 331 EHRFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 331 d~riv~~GAGsAgiGiA~ll~~ 352 (461)
+..|+|+|||.||+..|-.|.+
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~ 24 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAG 24 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHh
Confidence 4579999999999999998865
No 289
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=66.97 E-value=7 Score=37.25 Aligned_cols=31 Identities=29% Similarity=0.435 Sum_probs=23.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
.|+|+|||.||+..|-.+.+ .|+ ++.++|+.
T Consensus 2 dv~IiGaG~aGl~~A~~l~~-----~g~-------~v~vie~~ 32 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLAD-----KGL-------RVLLLEKK 32 (295)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecc
Confidence 37999999999999987754 354 46666665
No 290
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=66.90 E-value=7.1 Score=43.61 Aligned_cols=34 Identities=26% Similarity=0.509 Sum_probs=27.8
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 330 ~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
.+.+|+|+|||.||+..|..|... |. ++.++|+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~-----G~-------~V~V~E~~ 359 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARN-----GV-------AVTVYDRH 359 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEecC
Confidence 578999999999999999988652 53 57888875
No 291
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=66.85 E-value=3.1 Score=42.88 Aligned_cols=81 Identities=21% Similarity=0.340 Sum_probs=48.5
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhh-------hhcc-ccCCCCCHHH
Q 012553 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK-------PWAH-EHEPVNNLLD 405 (461)
Q Consensus 334 iv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~-------~fA~-~~~~~~~L~e 405 (461)
|+|+|||..|..+++.|.+. + ...++.+.|++- .+ +..... .+.+ +..+..+|.+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~-----~-----~~~~v~va~r~~----~~---~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 63 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR-----G-----PFEEVTVADRNP----EK---AERLAEKLLGDRVEAVQVDVNDPESLAE 63 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT-----T-----CE-EEEEEESSH----HH---HHHHHT--TTTTEEEEE--TTTHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcC-----C-----CCCcEEEEECCH----HH---HHHHHhhccccceeEEEEecCCHHHHHH
Confidence 78999999999999988653 1 012788888841 11 111111 1111 1122235888
Q ss_pred hhcccCCcEEEeccCCCCCCCHHHHHHHhc
Q 012553 406 AVKVIKPTILIGSSGVGRTFTKEVIEAMAS 435 (461)
Q Consensus 406 aV~~vkptvLIG~S~~~g~Ft~evv~~Ma~ 435 (461)
.+++ .|++|-+++.. +...++++-.+
T Consensus 64 ~~~~--~dvVin~~gp~--~~~~v~~~~i~ 89 (386)
T PF03435_consen 64 LLRG--CDVVINCAGPF--FGEPVARACIE 89 (386)
T ss_dssp HHTT--SSEEEE-SSGG--GHHHHHHHHHH
T ss_pred HHhc--CCEEEECCccc--hhHHHHHHHHH
Confidence 9988 79999988865 77778776543
No 292
>PRK07233 hypothetical protein; Provisional
Probab=66.78 E-value=6.1 Score=40.32 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=25.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
||+|+|||-||+..|..|.+. | .++.+++++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~-----G-------~~v~vlE~~ 31 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR-----G-------HEVTVFEAD 31 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEEeC
Confidence 689999999999999888653 5 367777776
No 293
>PLN02527 aspartate carbamoyltransferase
Probab=66.67 E-value=1e+02 Score=31.80 Aligned_cols=136 Identities=18% Similarity=0.213 Sum_probs=76.3
Q ss_pred HHHHHHHHHhcCCCeeeeeecCCcccHHHHHHHHcCCCceec--cCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcc
Q 012553 263 DEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFN--DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAG 340 (461)
Q Consensus 263 defv~av~~~fGp~~lIq~EDf~~~~af~iL~ryr~~~~~Fn--DDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAG 340 (461)
.+.+..+ .+| .++ |-+-.+......+ +.+| .++||.| |+...=-.=+||=++.-.+..| ++++.||+++|.+
T Consensus 87 ~Dta~vl-s~y-~D~-iviR~~~~~~~~~-~a~~-~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g-~l~g~kva~vGD~ 160 (306)
T PLN02527 87 EDTIRTV-EGY-SDI-IVLRHFESGAARR-AAAT-AEIPVINAGDGPGQHPTQALLDVYTIQREIG-RLDGIKVGLVGDL 160 (306)
T ss_pred HHHHHHH-HHh-CcE-EEEECCChhHHHH-HHHh-CCCCEEECCCCCCCChHHHHHHHHHHHHHhC-CcCCCEEEEECCC
Confidence 3344333 345 333 3344444443333 3344 4789999 4333333445666666655555 5999999999987
Q ss_pred hHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhcccc-C---CCCCHHHhhcccCCcEEE
Q 012553 341 EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-E---PVNNLLDAVKVIKPTILI 416 (461)
Q Consensus 341 sAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~-~---~~~~L~eaV~~vkptvLI 416 (461)
.=+ -+++-++.++.+-.|+ ++.++-.+|+- +++....++++. . ...++.||+++ +||+.
T Consensus 161 ~~~-rv~~Sl~~~~~~~~g~-------~v~~~~P~~~~-------~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvvy 223 (306)
T PLN02527 161 ANG-RTVRSLAYLLAKYEDV-------KIYFVAPDVVK-------MKDDIKDYLTSKGVEWEESSDLMEVASK--CDVLY 223 (306)
T ss_pred CCC-hhHHHHHHHHHhcCCC-------EEEEECCCccC-------CCHHHHHHHHHcCCEEEEEcCHHHHhCC--CCEEE
Confidence 422 2344444443331243 68878777761 222222333321 1 12689999998 99999
Q ss_pred eccCC
Q 012553 417 GSSGV 421 (461)
Q Consensus 417 G~S~~ 421 (461)
-.+.+
T Consensus 224 t~~~q 228 (306)
T PLN02527 224 QTRIQ 228 (306)
T ss_pred ECCcc
Confidence 87754
No 294
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=66.67 E-value=5.2 Score=44.51 Aligned_cols=38 Identities=26% Similarity=0.423 Sum_probs=32.2
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCc
Q 012553 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (461)
Q Consensus 329 l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GL 377 (461)
++..|.+++|||+-|++||+-|+.. | .++|.+||.--+
T Consensus 338 is~~KcLLLGAGTLGC~VAR~Ll~W-----G------vRhITFvDn~kV 375 (669)
T KOG2337|consen 338 ISQTKCLLLGAGTLGCNVARNLLGW-----G------VRHITFVDNGKV 375 (669)
T ss_pred hhcceeEEecCcccchHHHHHHHhh-----c------cceEEEEecCee
Confidence 4568999999999999999999887 5 479999997533
No 295
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=66.25 E-value=27 Score=35.26 Aligned_cols=35 Identities=17% Similarity=0.159 Sum_probs=24.4
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcC
Q 012553 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (461)
Q Consensus 330 ~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs 374 (461)
..++++|+|||..|+..+.++...+ | ..+++.+|+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~----g------~~~vi~~~~ 197 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIY----P------ESKLVVFGK 197 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhc----C------CCcEEEEeC
Confidence 4789999999988877766664321 3 136777775
No 296
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=66.21 E-value=16 Score=36.67 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=26.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcC
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs 374 (461)
.||.|+|+|..|-++|.-|++. |.. ...+|+++|+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~-----g~~---~~~~I~v~~r 37 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINK-----NIV---SPDQIICSDL 37 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHC-----CCC---CCceEEEECC
Confidence 3799999999999999988642 531 2347888886
No 297
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=66.17 E-value=21 Score=40.77 Aligned_cols=43 Identities=5% Similarity=-0.004 Sum_probs=28.5
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcCCCCchh
Q 012553 408 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLWLIRKFN 452 (461)
Q Consensus 408 ~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Lsnp~~~~ 452 (461)
+..+|+++|..++.. +.-.-+.+-.++-+|=|.+=..||-.++
T Consensus 416 ~~~~~~~ilasnTS~--l~i~~ia~~~~~p~r~ig~Hff~P~~~~ 458 (714)
T TIGR02437 416 QHVREDAILASNTST--ISISLLAKALKRPENFCGMHFFNPVHRM 458 (714)
T ss_pred hhCCCCcEEEECCCC--CCHHHHHhhcCCcccEEEEecCCCcccC
Confidence 345799999887754 5444444433445555999999997655
No 298
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=66.14 E-value=20 Score=37.27 Aligned_cols=46 Identities=9% Similarity=0.073 Sum_probs=30.2
Q ss_pred HhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcCCCCchh
Q 012553 405 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLWLIRKFN 452 (461)
Q Consensus 405 eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Lsnp~~~~ 452 (461)
++=+..+|+++|+.++.+ +.-.-+.+=.++-||=|.+=..||-.+|
T Consensus 103 ~l~~~~~~~aIlASNTSs--l~it~ia~~~~rper~iG~HFfNP~~~m 148 (307)
T COG1250 103 ELEALAKPDAILASNTSS--LSITELAEALKRPERFIGLHFFNPVPLM 148 (307)
T ss_pred HHHhhcCCCcEEeeccCC--CCHHHHHHHhCCchhEEEEeccCCCCcc
Confidence 333445799999987754 4433333333666677888899997765
No 299
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=66.04 E-value=8.8 Score=37.02 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=22.9
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHH
Q 012553 328 TLAEHRFLFLGAGEAGTGIAELIALE 353 (461)
Q Consensus 328 ~l~d~riv~~GAGsAgiGiA~ll~~~ 353 (461)
+|++.++||+|+|..|..-++.|+.+
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~ 31 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKA 31 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHC
Confidence 47788999999999999999988764
No 300
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=65.99 E-value=6.9 Score=41.93 Aligned_cols=21 Identities=38% Similarity=0.515 Sum_probs=18.4
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 012553 332 HRFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~ 352 (461)
-.|+|+|||.||...|..+..
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~ 60 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAK 60 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 468999999999999988765
No 301
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=65.99 E-value=26 Score=35.51 Aligned_cols=104 Identities=15% Similarity=0.195 Sum_probs=62.0
Q ss_pred hCCCcccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChh----------hhhh
Q 012553 325 IGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF----------KKPW 393 (461)
Q Consensus 325 ~g~~l~d~riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~----------k~~f 393 (461)
++-.++..||+|.|| |-.|..+++.|+.. | .+++.+|+. .......+... +..|
T Consensus 9 ~~~~~~~~~vlVtGatGfiG~~lv~~L~~~-----g-------~~V~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (348)
T PRK15181 9 TKLVLAPKRWLITGVAGFIGSGLLEELLFL-----N-------QTVIGLDNF---STGYQHNLDDVRTSVSEEQWSRFIF 73 (348)
T ss_pred hcccccCCEEEEECCccHHHHHHHHHHHHC-----C-------CEEEEEeCC---CCcchhhhhhhhhccccccCCceEE
Confidence 344567789999997 99999999888752 4 257777753 11110111111 0011
Q ss_pred cc-ccCCCCCHHHhhcccCCcEEEeccCCCCC----------------CCHHHHHHHhcCCCCcEEEEc
Q 012553 394 AH-EHEPVNNLLDAVKVIKPTILIGSSGVGRT----------------FTKEVIEAMASFNEVVFQALL 445 (461)
Q Consensus 394 A~-~~~~~~~L~eaV~~vkptvLIG~S~~~g~----------------Ft~evv~~Ma~~~erPIIF~L 445 (461)
-. +-.....|.+++++ ||++|=+.+.... .|..+++.+.+..-+.+||+=
T Consensus 74 ~~~Di~d~~~l~~~~~~--~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~S 140 (348)
T PRK15181 74 IQGDIRKFTDCQKACKN--VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAA 140 (348)
T ss_pred EEccCCCHHHHHHHhhC--CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEee
Confidence 11 11122356777775 9999988765421 245788888776556888864
No 302
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=65.91 E-value=8.6 Score=37.49 Aligned_cols=94 Identities=17% Similarity=0.208 Sum_probs=54.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhc--cccCCCCCHHHh-hc
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA--HEHEPVNNLLDA-VK 408 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA--~~~~~~~~L~ea-V~ 408 (461)
.+|+|+|+|..|..+|+.|... | .++.++|.+--.... .+.+..--.+ -+......|.+| +.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~-----g-------~~Vv~Id~d~~~~~~---~~~~~~~~~~v~gd~t~~~~L~~agi~ 65 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE-----G-------HNVVLIDRDEERVEE---FLADELDTHVVIGDATDEDVLEEAGID 65 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC-----C-------CceEEEEcCHHHHHH---HhhhhcceEEEEecCCCHHHHHhcCCC
Confidence 3799999999999999998753 4 478888875221111 0000000001 112223467777 66
Q ss_pred ccCCcEEEeccCCCCCCCHHHHHHHhcC-CCCcEEEE
Q 012553 409 VIKPTILIGSSGVGRTFTKEVIEAMASF-NEVVFQAL 444 (461)
Q Consensus 409 ~vkptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIF~ 444 (461)
. .|++|-+++.. -+.-++-.|+.. ..-|-|.+
T Consensus 66 ~--aD~vva~t~~d--~~N~i~~~la~~~~gv~~via 98 (225)
T COG0569 66 D--ADAVVAATGND--EVNSVLALLALKEFGVPRVIA 98 (225)
T ss_pred c--CCEEEEeeCCC--HHHHHHHHHHHHhcCCCcEEE
Confidence 5 89999888764 444555555532 33444443
No 303
>PRK07045 putative monooxygenase; Reviewed
Probab=65.76 E-value=7.6 Score=39.63 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=18.6
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 012553 332 HRFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~ 352 (461)
-+|+|+|||.||+..|-.|.+
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~ 26 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGA 26 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHh
Confidence 479999999999999988765
No 304
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=65.62 E-value=9 Score=30.48 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=23.1
Q ss_pred EeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCc
Q 012553 336 FLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (461)
Q Consensus 336 ~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GL 377 (461)
|+|||.||+..|-.|.+. | .+|.++|++--
T Consensus 1 IiGaG~sGl~aA~~L~~~-----g-------~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-----G-------YRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-----T-------SEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHC-----C-------CcEEEEecCcc
Confidence 689999999999988653 3 48999988643
No 305
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=65.61 E-value=8.2 Score=41.23 Aligned_cols=34 Identities=21% Similarity=0.394 Sum_probs=27.6
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 330 ~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
.+.+|+|+|||.||+..|..+.. .|. ++.++|+.
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~-----~G~-------~V~vie~~ 175 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLAR-----AGH-------KVTVFERA 175 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEecC
Confidence 46799999999999999988764 253 68888875
No 306
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=65.57 E-value=8.6 Score=40.87 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=28.7
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 328 ~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
+-+..+|+|+|+|.||+..|..+... |. ++.++|+.
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~~-----G~-------~V~vie~~ 165 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAKA-----GH-------SVTVFEAL 165 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHC-----CC-------cEEEEecC
Confidence 44578999999999999999988642 53 68888874
No 307
>PLN02268 probable polyamine oxidase
Probab=65.55 E-value=3.4 Score=42.92 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=18.5
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 012553 333 RFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~ 352 (461)
+|+|+|||-||+..|..|.+
T Consensus 2 ~VvVIGaGisGL~aA~~L~~ 21 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHD 21 (435)
T ss_pred CEEEECCCHHHHHHHHHHHh
Confidence 78999999999999999876
No 308
>PRK06753 hypothetical protein; Provisional
Probab=65.52 E-value=7.5 Score=39.21 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=18.1
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 012553 333 RFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~ 352 (461)
+|+|+|||.||+..|..|.+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~ 21 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQE 21 (373)
T ss_pred EEEEECCCHHHHHHHHHHHh
Confidence 79999999999999988865
No 309
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=65.29 E-value=33 Score=33.10 Aligned_cols=104 Identities=16% Similarity=0.237 Sum_probs=55.4
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhh-ccceEEEEcCCCccccCCcCCCChhhhhhccccCCCCCHHHhh
Q 012553 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEE-TRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAV 407 (461)
Q Consensus 329 l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~ee-A~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV 407 (461)
..++||.|+|.|..+. +|.-+...|.. ++..+- +..-+.+.|..-+++.-- +-..+..-|++. |.-..
T Consensus 39 ~~~~rI~~~G~GgSa~-~A~~~a~~l~~--~~~~~r~gl~a~~l~~d~~~~ta~a--nd~~~~~~f~~q------l~~~~ 107 (196)
T PRK10886 39 LNGNKILCCGNGTSAA-NAQHFAASMIN--RFETERPSLPAIALNTDNVVLTAIA--NDRLHDEVYAKQ------VRALG 107 (196)
T ss_pred HcCCEEEEEECcHHHH-HHHHHHHHHhc--cccccCCCcceEEecCcHHHHHHHh--ccccHHHHHHHH------HHHcC
Confidence 3578999999998766 66666655432 111000 111222323322322211 112344445543 33222
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHH--hcCCCCcEEEEcCC
Q 012553 408 KVIKPTILIGSSGVGRTFTKEVIEAM--ASFNEVVFQALLWL 447 (461)
Q Consensus 408 ~~vkptvLIG~S~~~g~Ft~evv~~M--a~~~erPIIF~Lsn 447 (461)
+ +-|++|+.|..|. |+++++.+ |+...-|+|---++
T Consensus 108 ~--~gDvli~iS~SG~--s~~v~~a~~~Ak~~G~~vI~IT~~ 145 (196)
T PRK10886 108 H--AGDVLLAISTRGN--SRDIVKAVEAAVTRDMTIVALTGY 145 (196)
T ss_pred C--CCCEEEEEeCCCC--CHHHHHHHHHHHHCCCEEEEEeCC
Confidence 2 4799999999774 78888876 45556666654443
No 310
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=65.01 E-value=12 Score=38.31 Aligned_cols=83 Identities=14% Similarity=0.169 Sum_probs=46.6
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhcc---ccCCCCCHHHhh
Q 012553 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---EHEPVNNLLDAV 407 (461)
Q Consensus 331 d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~---~~~~~~~L~eaV 407 (461)
-.++.|+|+|.-|..-++.+... .+ -++|++.|+. .. ....+...+.+ +.....++++++
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~----~~------i~~v~v~~r~----~~---~~~~~~~~~~~~~~~v~~~~~~~~av 190 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAV----RP------IKEVRVYSRS----PE---RAEAFAARLRDLGVPVVAVDSAEEAV 190 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHH----S--------SEEEEE-SS----HH---HHHHHHHHHHCCCTCEEEESSHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHh----CC------ceEEEEEccC----hh---HHHHHHHhhccccccceeccchhhhc
Confidence 36899999999988888877654 23 4688888863 11 12233333333 111246899999
Q ss_pred cccCCcEEEeccCCC---CCCCHHHHHH
Q 012553 408 KVIKPTILIGSSGVG---RTFTKEVIEA 432 (461)
Q Consensus 408 ~~vkptvLIG~S~~~---g~Ft~evv~~ 432 (461)
+. +||++.++... ..|+.++++.
T Consensus 191 ~~--aDii~taT~s~~~~P~~~~~~l~~ 216 (313)
T PF02423_consen 191 RG--ADIIVTATPSTTPAPVFDAEWLKP 216 (313)
T ss_dssp TT--SSEEEE----SSEEESB-GGGS-T
T ss_pred cc--CCEEEEccCCCCCCccccHHHcCC
Confidence 98 99999875433 2688887763
No 311
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=64.99 E-value=7.3 Score=39.44 Aligned_cols=21 Identities=24% Similarity=0.427 Sum_probs=18.2
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 012553 332 HRFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~ 352 (461)
..|+|+|||.||+..|-.|.+
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~ 26 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQ 26 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHh
Confidence 469999999999999987754
No 312
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=64.94 E-value=9.5 Score=38.20 Aligned_cols=35 Identities=29% Similarity=0.344 Sum_probs=25.2
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCC
Q 012553 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (461)
Q Consensus 330 ~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~G 376 (461)
.+--++|+|||+||+..|..|.+. |+ ++.+++++=
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~-----g~-------kV~v~E~~~ 50 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKA-----GL-------KVAVIERKL 50 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHH-----TS--------EEEEESSS
T ss_pred ccCCEEEECCChhHHHHHHHHHHC-----CC-------eEEEEecCC
Confidence 356789999999999999888764 64 678888763
No 313
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=64.51 E-value=7.5 Score=40.99 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=18.4
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 012553 332 HRFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~ 352 (461)
-.|+|+|||.||...|-.+.+
T Consensus 6 ~DViIVGaGpAG~~aA~~La~ 26 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAR 26 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHh
Confidence 468999999999999988764
No 314
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=64.31 E-value=21 Score=39.22 Aligned_cols=34 Identities=29% Similarity=0.444 Sum_probs=26.9
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 330 ~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
.-+||.|+|+|..|.|||..++.+ |. .++++|.+
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~a-----G~-------~V~l~d~~ 37 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASA-----GH-------QVLLYDIR 37 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeCC
Confidence 346899999999999999998764 54 57777754
No 315
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=64.30 E-value=25 Score=39.69 Aligned_cols=34 Identities=21% Similarity=0.385 Sum_probs=26.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
.||.|+|+|..|.++|..+... |. ..+++.+|++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~-----G~-----~~~V~~~d~~ 37 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER-----GL-----AREVVAVDRR 37 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CC-----CCEEEEEECC
Confidence 6899999999999999988653 53 2458888874
No 316
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=64.19 E-value=14 Score=37.08 Aligned_cols=45 Identities=24% Similarity=0.313 Sum_probs=29.0
Q ss_pred HHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcC
Q 012553 318 VVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (461)
Q Consensus 318 ll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs 374 (461)
.+.|++..+. ..+++++|.|||+.|...+.+... .|. ++++.+|+
T Consensus 158 a~~al~~~~~-~~g~~VlV~G~G~vG~~aiqlak~-----~G~------~~Vi~~~~ 202 (343)
T PRK09880 158 AIHAAHQAGD-LQGKRVFVSGVGPIGCLIVAAVKT-----LGA------AEIVCADV 202 (343)
T ss_pred HHHHHHhcCC-CCCCEEEEECCCHHHHHHHHHHHH-----cCC------cEEEEEeC
Confidence 3555554433 368899999999888877654432 253 46777765
No 317
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=63.92 E-value=22 Score=35.35 Aligned_cols=96 Identities=14% Similarity=0.238 Sum_probs=54.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC----------CccccCCcCCCChhhhhhcccc-----
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK----------GLIVSSRKDSLQHFKKPWAHEH----- 397 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~----------GLi~~~R~~~L~~~k~~fA~~~----- 397 (461)
||.|+|+|..|.++|..+... | .+++++|++ |.+.... . +. . .+.+.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~-----g-------~~V~~~d~~~~~~~~a~~~g~~~~~~-~---~~-~-~~~~aDlVil 63 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL-----G-------HTVYGVSRRESTCERAIERGLVDEAS-T---DL-S-LLKDCDLVIL 63 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC-----C-------CEEEEEECCHHHHHHHHHCCCccccc-C---CH-h-HhcCCCEEEE
Confidence 799999999999999988653 4 258888864 2211110 0 00 0 01110
Q ss_pred -CCC----CCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEE--EcCCCCc
Q 012553 398 -EPV----NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQA--LLWLIRK 450 (461)
Q Consensus 398 -~~~----~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF--~Lsnp~~ 450 (461)
-+. ..+.+....++|+.+|=- .+ ..+.++++.+.+...+ +|= ||+||.+
T Consensus 64 avp~~~~~~~~~~l~~~l~~~~ii~d--~~-Svk~~~~~~~~~~~~~-~v~~HPm~G~~~ 119 (279)
T PRK07417 64 ALPIGLLLPPSEQLIPALPPEAIVTD--VG-SVKAPIVEAWEKLHPR-FVGSHPMAGTAE 119 (279)
T ss_pred cCCHHHHHHHHHHHHHhCCCCcEEEe--Cc-chHHHHHHHHHHhhCC-ceeeCCcCCCCc
Confidence 010 123344444567776622 22 4778899998875554 553 8998864
No 318
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=63.83 E-value=8.2 Score=42.50 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=16.7
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 012553 332 HRFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~ 352 (461)
.||+|+|||++|+..|+.+++
T Consensus 2 krVaVIGaG~sGL~a~k~l~e 22 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLE 22 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHH
T ss_pred CEEEEECccHHHHHHHHHHHH
Confidence 589999999999999999875
No 319
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=63.69 E-value=32 Score=33.11 Aligned_cols=78 Identities=13% Similarity=0.213 Sum_probs=44.5
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChh----hhhhc-cccCCCCCHHHh
Q 012553 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF----KKPWA-HEHEPVNNLLDA 406 (461)
Q Consensus 333 riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~----k~~fA-~~~~~~~~L~ea 406 (461)
+|+|.|| |..|..+++.++.. |- .-+++.+|+... ..+.+.+... ...+- -+.....++.++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~-----~~-----~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 68 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNE-----HP-----DAEVIVLDKLTY--AGNLENLADLEDNPRYRFVKGDIGDRELVSRL 68 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHh-----CC-----CCEEEEecCCCc--chhhhhhhhhccCCCcEEEEcCCcCHHHHHHH
Confidence 5788887 88999998887653 31 236777775211 0111111111 01111 122223467888
Q ss_pred hcccCCcEEEeccCCC
Q 012553 407 VKVIKPTILIGSSGVG 422 (461)
Q Consensus 407 V~~vkptvLIG~S~~~ 422 (461)
++..+||++|=+++..
T Consensus 69 ~~~~~~d~vi~~a~~~ 84 (317)
T TIGR01181 69 FTEHQPDAVVHFAAES 84 (317)
T ss_pred HhhcCCCEEEEccccc
Confidence 8888899999888753
No 320
>PLN02852 ferredoxin-NADP+ reductase
Probab=63.49 E-value=6.6 Score=42.96 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=31.2
Q ss_pred HhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 324 LIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 324 ~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
....+-...||+|+|||.||+..|..|.... .| -+|.++|+.
T Consensus 19 ~~~~~~~~~~VaIVGaGPAGl~AA~~L~~~~---~g-------~~Vtv~E~~ 60 (491)
T PLN02852 19 SSSSTSEPLHVCVVGSGPAGFYTADKLLKAH---DG-------ARVDIIERL 60 (491)
T ss_pred CCCCCCCCCcEEEECccHHHHHHHHHHHhhC---CC-------CeEEEEecC
Confidence 3344455679999999999999999887531 24 268888876
No 321
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=63.35 E-value=17 Score=38.90 Aligned_cols=85 Identities=12% Similarity=0.144 Sum_probs=47.6
Q ss_pred HHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhc----
Q 012553 319 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA---- 394 (461)
Q Consensus 319 l~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA---- 394 (461)
..++.-....|.+.|+++++.+.-..++++.+.+ .|+. +..+.+. .....+ ....+....
T Consensus 314 ~~~l~~~~~~L~Gkrv~i~~g~~~~~~l~~~l~e-----lGme-------vv~~~t~---~~~~~d-~~~l~~~~~~~~~ 377 (456)
T TIGR01283 314 RPALEPYRERLKGKKAAIYTGGVKSWSLVSALQD-----LGME-------VVATGTQ---KGTEED-YARIRELMGEGTV 377 (456)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCchHHHHHHHHHH-----CCCE-------EEEEeee---cCCHHH-HHHHHHHcCCCeE
Confidence 4444444566889999999888888999988654 4762 3333211 111100 000001110
Q ss_pred -cccCCCCCHHHhhcccCCcEEEecc
Q 012553 395 -HEHEPVNNLLDAVKVIKPTILIGSS 419 (461)
Q Consensus 395 -~~~~~~~~L~eaV~~vkptvLIG~S 419 (461)
.+..+...+.+.++..+||++||-|
T Consensus 378 v~~~~d~~e~~~~i~~~~pDl~ig~~ 403 (456)
T TIGR01283 378 MLDDANPRELLKLLLEYKADLLIAGG 403 (456)
T ss_pred EEeCCCHHHHHHHHhhcCCCEEEEcc
Confidence 0111224578888999999999853
No 322
>PLN02463 lycopene beta cyclase
Probab=63.05 E-value=8.4 Score=41.44 Aligned_cols=21 Identities=24% Similarity=0.506 Sum_probs=18.2
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 012553 332 HRFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~ 352 (461)
-.|+|+|||.||..+|..+.+
T Consensus 29 ~DVvIVGaGpAGLalA~~La~ 49 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSE 49 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHH
Confidence 468999999999999988754
No 323
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=62.93 E-value=8.7 Score=38.15 Aligned_cols=35 Identities=29% Similarity=0.494 Sum_probs=26.5
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCC
Q 012553 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (461)
Q Consensus 330 ~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~G 376 (461)
.+-.|+|+|||.||+..|..+... |+ ++.+++++.
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~-----G~-------~V~vlEk~~ 54 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKN-----GL-------KVCVLERSL 54 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHC-----CC-------cEEEEecCC
Confidence 467899999999999999877542 43 566777653
No 324
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=62.73 E-value=86 Score=35.87 Aligned_cols=43 Identities=16% Similarity=0.064 Sum_probs=30.0
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcCCCCchh
Q 012553 408 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLWLIRKFN 452 (461)
Q Consensus 408 ~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Lsnp~~~~ 452 (461)
+.++|+.+|..++.. +.-.-+.+...+-+|=|.+=..||-.++
T Consensus 413 ~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~ig~Hff~P~~~~ 455 (708)
T PRK11154 413 QNCAPHTIFASNTSS--LPIGQIAAAAARPEQVIGLHYFSPVEKM 455 (708)
T ss_pred hhCCCCcEEEECCCC--CCHHHHHHhcCcccceEEEecCCccccC
Confidence 445799999877654 5555454444566677999999998765
No 325
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=62.68 E-value=7.7 Score=39.67 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=25.0
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 331 d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
...|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~-----~G~-------~v~liE~~ 38 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALAD-----AGL-------SVALVEGR 38 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEeCC
Confidence 3579999999999999987654 364 46677764
No 326
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=62.63 E-value=7.8 Score=39.15 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=17.9
Q ss_pred EEEeCcchHHHHHHHHHHHH
Q 012553 334 FLFLGAGEAGTGIAELIALE 353 (461)
Q Consensus 334 iv~~GAGsAgiGiA~ll~~~ 353 (461)
|+|+|||.||+..|-.|.+.
T Consensus 2 v~IvGaG~aGl~~A~~L~~~ 21 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRL 21 (382)
T ss_pred EEEECccHHHHHHHHHHhcC
Confidence 79999999999999988753
No 327
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=62.38 E-value=8.6 Score=38.56 Aligned_cols=19 Identities=26% Similarity=0.482 Sum_probs=17.0
Q ss_pred EEEeCcchHHHHHHHHHHH
Q 012553 334 FLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 334 iv~~GAGsAgiGiA~ll~~ 352 (461)
|+|+|||.||+..|-.|.+
T Consensus 2 ViIvGaG~aGl~~A~~L~~ 20 (385)
T TIGR01988 2 IVIVGGGMVGLALALALAR 20 (385)
T ss_pred EEEECCCHHHHHHHHHHhc
Confidence 7999999999999987764
No 328
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=62.35 E-value=11 Score=38.31 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=19.1
Q ss_pred cceEEEeCcchHHHHHHHHHHH
Q 012553 331 EHRFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 331 d~riv~~GAGsAgiGiA~ll~~ 352 (461)
..+|+|+|||.||...|-.|..
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~ 24 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSR 24 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhh
Confidence 3579999999999999988865
No 329
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=62.22 E-value=9.4 Score=39.39 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=30.4
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC--CccccCCc
Q 012553 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK--GLIVSSRK 383 (461)
Q Consensus 331 d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~--GLi~~~R~ 383 (461)
...|+|+|||.||+..|-.|... |+ ++.++++. .+...+|.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~-----G~-------~V~l~E~~~~~~~~~~r~ 44 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARA-----GL-------DVTLLERAPRELLERGRG 44 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhC-----CC-------cEEEEccCccccccCcee
Confidence 35799999999999999888653 65 67888886 44444443
No 330
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=62.17 E-value=10 Score=38.11 Aligned_cols=39 Identities=10% Similarity=0.055 Sum_probs=26.1
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcCCCCch
Q 012553 411 KPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLWLIRKF 451 (461)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Lsnp~~~ 451 (461)
+|+++|..++.. +....+..=..+.+|=|.+=+.||-.+
T Consensus 112 ~~~~il~snTS~--~~~~~la~~~~~~~r~~g~hf~~P~~~ 150 (286)
T PRK07819 112 DPDAVLASNTSS--IPIMKLAAATKRPGRVLGLHFFNPVPV 150 (286)
T ss_pred CCCcEEEECCCC--CCHHHHHhhcCCCccEEEEecCCCccc
Confidence 688888776643 555555554456667677888887543
No 331
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=62.09 E-value=10 Score=40.14 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=27.2
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 330 ~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
...+|+|+|||.||+..|..+.. .| .++.++|+.
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~-----~g-------~~V~lie~~ 172 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLAR-----KG-------YDVTIFEAR 172 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEccC
Confidence 45799999999999999987754 24 368888875
No 332
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=61.88 E-value=12 Score=39.85 Aligned_cols=28 Identities=18% Similarity=0.206 Sum_probs=23.5
Q ss_pred hCCCcccceEEEeCcchHHHHHHHHHHH
Q 012553 325 IGGTLAEHRFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 325 ~g~~l~d~riv~~GAGsAgiGiA~ll~~ 352 (461)
.+..++.++++|+|+|.+|+.+|+.+..
T Consensus 10 ~~~~~~~~~v~viG~G~~G~~~A~~L~~ 37 (480)
T PRK01438 10 WHSDWQGLRVVVAGLGVSGFAAADALLE 37 (480)
T ss_pred cccCcCCCEEEEECCCHHHHHHHHHHHH
Confidence 3456778899999999999999988864
No 333
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=61.81 E-value=9.3 Score=40.03 Aligned_cols=33 Identities=30% Similarity=0.503 Sum_probs=26.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCC
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~G 376 (461)
-.|||+|||+||+..|..+.+. | .++.++|++.
T Consensus 4 ~dvvVIG~GpaG~~aA~~l~~~-----g-------~~V~liE~~~ 36 (438)
T PRK07251 4 YDLIVIGFGKAGKTLAAKLASA-----G-------KKVALVEESK 36 (438)
T ss_pred cCEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEecCC
Confidence 4699999999999999887652 5 4689999863
No 334
>PRK07588 hypothetical protein; Provisional
Probab=61.71 E-value=9.6 Score=38.93 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=18.3
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 012553 332 HRFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~ 352 (461)
.+|+|+|||.||+..|-.|.+
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~ 21 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRR 21 (391)
T ss_pred CeEEEECccHHHHHHHHHHHH
Confidence 379999999999999988764
No 335
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=61.53 E-value=11 Score=39.39 Aligned_cols=36 Identities=33% Similarity=0.529 Sum_probs=28.1
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 328 ~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
.+++.+++|+|+|.+|.++|+.++.. |. +++++|++
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~-----G~-------~V~~~d~~ 37 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKL-----GA-------KVILTDEK 37 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEeCC
Confidence 36778999999999999999988753 52 56666664
No 336
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=61.52 E-value=12 Score=42.62 Aligned_cols=36 Identities=17% Similarity=0.272 Sum_probs=29.1
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 328 ~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
+-.+.+|+|+|||.||+..|..+... |. ++.++|+.
T Consensus 428 ~~~~~~V~IIGaGpAGl~aA~~l~~~-----G~-------~V~v~e~~ 463 (752)
T PRK12778 428 EKNGKKVAVIGSGPAGLSFAGDLAKR-----GY-------DVTVFEAL 463 (752)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEecC
Confidence 34578999999999999999988653 53 68888874
No 337
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=61.51 E-value=8.4 Score=40.46 Aligned_cols=36 Identities=19% Similarity=0.351 Sum_probs=26.3
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCC
Q 012553 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (461)
Q Consensus 329 l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~G 376 (461)
.+..||||+|+|.||+..|+.|.. ..-+|.++|.+-
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~------------~~~~ItlI~~~~ 43 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDP------------KKYNITVISPRN 43 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCc------------CCCeEEEEcCCC
Confidence 456799999999999998876521 123688888653
No 338
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=61.26 E-value=13 Score=40.56 Aligned_cols=104 Identities=18% Similarity=0.313 Sum_probs=65.6
Q ss_pred CCCCccccchhhhhHHHhhCCCCCCceeeEEe-ecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCe
Q 012553 199 LGCQGMGIPVGKLALYTALGGIRPSACLPITV-DVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKV 277 (461)
Q Consensus 199 lG~~GmgI~~GKl~Ly~a~gGI~P~~~lPI~L-DvGTnne~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~~ 277 (461)
.||-| -||+++-.|.|+-==-....+.| .|+.| .+ +...+.+ += ++.
T Consensus 241 YGPPG----TGKSS~IaAmAn~L~ydIydLeLt~v~~n-~d-----------------------Lr~LL~~---t~-~kS 288 (457)
T KOG0743|consen 241 YGPPG----TGKSSFIAAMANYLNYDIYDLELTEVKLD-SD-----------------------LRHLLLA---TP-NKS 288 (457)
T ss_pred eCCCC----CCHHHHHHHHHhhcCCceEEeeeccccCc-HH-----------------------HHHHHHh---CC-CCc
Confidence 56666 38999999999865222555666 56533 21 2333333 33 778
Q ss_pred eeeeecCCcccHHHHHHHHcCCCceeccCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCc
Q 012553 278 LIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGA 339 (461)
Q Consensus 278 lIq~EDf~~~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GA 339 (461)
+|-+|||.. +|.+=++-..+-.-|++ .-.-|||.||||++-=.--.=.+.||+|+=.
T Consensus 289 IivIEDIDc--s~~l~~~~~~~~~~~~~---~~~~VTlSGLLNfiDGlwSscg~ERIivFTT 345 (457)
T KOG0743|consen 289 ILLIEDIDC--SFDLRERRKKKKENFEG---DLSRVTLSGLLNFLDGLWSSCGDERIIVFTT 345 (457)
T ss_pred EEEEeeccc--ccccccccccccccccC---CcceeehHHhhhhhccccccCCCceEEEEec
Confidence 899999964 34443443333333333 4567999999999865545555788888864
No 339
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=61.07 E-value=9.3 Score=38.90 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=24.8
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 331 d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
+..|+|+|||.||+..|-.+.+ .|+ ++.++|+.
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~-----~G~-------~V~liE~~ 37 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQ-----HGF-------SVAVLEHA 37 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 4579999999999999977754 254 46666654
No 340
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=61.02 E-value=7.4 Score=39.56 Aligned_cols=41 Identities=24% Similarity=0.365 Sum_probs=34.4
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccc
Q 012553 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIV 379 (461)
Q Consensus 328 ~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~ 379 (461)
+|++++|+++|.|-.|--+++.|+.. |+ .+|.++|-+-+=.
T Consensus 27 kl~~~~V~VvGiGGVGSw~veALaRs-----Gi------g~itlID~D~v~v 67 (263)
T COG1179 27 KLKQAHVCVVGIGGVGSWAVEALARS-----GI------GRITLIDMDDVCV 67 (263)
T ss_pred HHhhCcEEEEecCchhHHHHHHHHHc-----CC------CeEEEEecccccc
Confidence 58899999999999999998888753 64 7999999986644
No 341
>PRK12829 short chain dehydrogenase; Provisional
Probab=60.94 E-value=27 Score=32.88 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=24.8
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 328 ~l~d~riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
.+++.+++|.|| |..|..+|+++++ .|. ++++++++
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~-----~g~-------~V~~~~r~ 44 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAE-----AGA-------RVHVCDVS 44 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 378899999998 5556666666643 252 58888753
No 342
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=60.79 E-value=9.9 Score=41.20 Aligned_cols=34 Identities=29% Similarity=0.415 Sum_probs=27.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCc
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GL 377 (461)
-.|||+|+|.+|++||..+... |+ ++.++|+..+
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~r-----Gl-------~V~LvEk~d~ 40 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGR-----GL-------SVLLCEQDDL 40 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEecCCC
Confidence 4699999999999999887653 65 5888988643
No 343
>PRK12831 putative oxidoreductase; Provisional
Probab=60.78 E-value=11 Score=40.42 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=27.4
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 330 ~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
...+|+|+|||.||+..|..+... |. ++.++|+.
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~-----G~-------~V~v~e~~ 172 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKM-----GY-------DVTIFEAL 172 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEecC
Confidence 567899999999999999988753 53 67788863
No 344
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=60.76 E-value=10 Score=44.69 Aligned_cols=40 Identities=20% Similarity=0.296 Sum_probs=31.7
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC----Ccccc
Q 012553 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK----GLIVS 380 (461)
Q Consensus 329 l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~----GLi~~ 380 (461)
-.+.||+|+|||.||+..|..|... |. ++.++|+. |++.-
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~-----G~-------~VtVfE~~~~~GG~l~y 347 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVE-----GF-------PVTVFEAFHDLGGVLRY 347 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEeeCCCCCceEEc
Confidence 3579999999999999999998753 64 68888875 66543
No 345
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=60.67 E-value=11 Score=40.52 Aligned_cols=36 Identities=17% Similarity=0.394 Sum_probs=27.7
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCC
Q 012553 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (461)
Q Consensus 330 ~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~G 376 (461)
+.-+++|+|||.+|+++|.-|.++ |.+ ++.++|+..
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~-----g~~------~~~i~Ek~~ 42 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQA-----GVP------DFVIFEKRD 42 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHc-----CCC------cEEEEEccC
Confidence 346899999999999999988764 653 266666663
No 346
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=60.43 E-value=19 Score=41.41 Aligned_cols=43 Identities=21% Similarity=0.162 Sum_probs=29.9
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcCCCCchh
Q 012553 408 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLWLIRKFN 452 (461)
Q Consensus 408 ~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Lsnp~~~~ 452 (461)
+.++|+++|..++.. +.-.-+.+-.++-+|=|.+=..||-.+|
T Consensus 438 ~~~~~~~ilasNTSs--l~i~~la~~~~~p~r~ig~Hff~P~~~m 480 (737)
T TIGR02441 438 AVVPPHCIIASNTSA--LPIKDIAAVSSRPEKVIGMHYFSPVDKM 480 (737)
T ss_pred hhCCCCcEEEEcCCC--CCHHHHHhhcCCccceEEEeccCCcccC
Confidence 345799999877753 6655555555566677888888997654
No 347
>PLN02240 UDP-glucose 4-epimerase
Probab=60.42 E-value=17 Score=36.20 Aligned_cols=105 Identities=14% Similarity=0.117 Sum_probs=58.2
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCCh------hhhhhcc-ccCC
Q 012553 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH------FKKPWAH-EHEP 399 (461)
Q Consensus 328 ~l~d~riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~------~k~~fA~-~~~~ 399 (461)
.++..+|+|.|| |--|..+++.|++. | .+++++|+..--.......+.. ....+.. +...
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~-----g-------~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 69 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLA-----G-------YKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRD 69 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHC-----C-------CEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCC
Confidence 466789999997 88898898888652 4 3688887542100000000000 0011111 1112
Q ss_pred CCCHHHhhcccCCcEEEeccCCCCC----------------CCHHHHHHHhcCCCCcEEEE
Q 012553 400 VNNLLDAVKVIKPTILIGSSGVGRT----------------FTKEVIEAMASFNEVVFQAL 444 (461)
Q Consensus 400 ~~~L~eaV~~vkptvLIG~S~~~g~----------------Ft~evv~~Ma~~~erPIIF~ 444 (461)
..++.++++..++|++|=+.+.... -+..+++.|.+.+-+.+||.
T Consensus 70 ~~~l~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ 130 (352)
T PLN02240 70 KEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFS 130 (352)
T ss_pred HHHHHHHHHhCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 2356777776689999977664321 12356677766555677764
No 348
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=60.33 E-value=10 Score=45.10 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=28.5
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 329 l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
-+..||+|+|||.||+..|..|... |. ++.++|+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~-----G~-------~VtV~Ek~ 571 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARA-----GH-------PVTVFERE 571 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHc-----CC-------eEEEEecc
Confidence 3568999999999999999998653 53 68888865
No 349
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=60.12 E-value=13 Score=39.82 Aligned_cols=55 Identities=24% Similarity=0.320 Sum_probs=38.4
Q ss_pred HHHcCCCceeccCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEE
Q 012553 294 AKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLV 372 (461)
Q Consensus 294 ~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lv 372 (461)
++|......+.|=..||+ .++++++++|.|| |.-|.++|+.+.+ .|. +++++
T Consensus 156 ~~~~~~~~~~~d~~~~ta---------------~sl~gK~VLITGASgGIG~aLA~~La~-----~G~-------~Vi~l 208 (406)
T PRK07424 156 NAYYCGTFTLVDKLMGTA---------------LSLKGKTVAVTGASGTLGQALLKELHQ-----QGA-------KVVAL 208 (406)
T ss_pred cceeeeeEEEeehhcCcc---------------cCCCCCEEEEeCCCCHHHHHHHHHHHH-----CCC-------EEEEE
Confidence 356667789999888988 2466789999998 5566666666643 252 57777
Q ss_pred cCC
Q 012553 373 DSK 375 (461)
Q Consensus 373 Ds~ 375 (461)
|++
T Consensus 209 ~r~ 211 (406)
T PRK07424 209 TSN 211 (406)
T ss_pred eCC
Confidence 654
No 350
>PRK08013 oxidoreductase; Provisional
Probab=60.09 E-value=11 Score=38.99 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=18.5
Q ss_pred cceEEEeCcchHHHHHHHHHHH
Q 012553 331 EHRFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 331 d~riv~~GAGsAgiGiA~ll~~ 352 (461)
+-.|+|+|||.||+..|-.|..
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~ 24 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQG 24 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhh
Confidence 3479999999999999977754
No 351
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=60.08 E-value=11 Score=40.77 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=29.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
||+++|||+.|+-+++.|+.+ |+...+ ..+|.++|.+
T Consensus 1 kVlvVGaGGlGcE~lKnLal~-----Gv~~g~-~G~I~IvD~D 37 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALM-----GVGTGE-SGEITVTDMD 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CCCcCC-CCeEEEECCC
Confidence 689999999999999999875 653222 2689999986
No 352
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=59.96 E-value=11 Score=38.53 Aligned_cols=21 Identities=24% Similarity=0.234 Sum_probs=18.3
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 012553 332 HRFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~ 352 (461)
.+|+|+|||.||...|-.|.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~ 24 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAK 24 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHh
Confidence 479999999999999977754
No 353
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=59.96 E-value=10 Score=40.01 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=26.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCC
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~G 376 (461)
-.+||+|||+||+..|..+... | .++.++|++.
T Consensus 5 yDvvVIGaGpaG~~aA~~aa~~-----G-------~~V~liE~~~ 37 (462)
T PRK06416 5 YDVIVIGAGPGGYVAAIRAAQL-----G-------LKVAIVEKEK 37 (462)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEeccc
Confidence 3689999999999999887653 5 4788888763
No 354
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=59.96 E-value=64 Score=29.36 Aligned_cols=37 Identities=24% Similarity=0.197 Sum_probs=26.6
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHh--cCCCCcEEEEcCCCC
Q 012553 411 KPTILIGSSGVGRTFTKEVIEAMA--SFNEVVFQALLWLIR 449 (461)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma--~~~erPIIF~Lsnp~ 449 (461)
+-|++|++|..| -|+++++.+. +...-|+|-=-+||.
T Consensus 79 ~~D~~i~iS~sG--~t~~~~~~~~~a~~~g~~ii~iT~~~~ 117 (154)
T TIGR00441 79 KGDVLLGISTSG--NSKNVLKAIEAAKDKGMKTITLAGKDG 117 (154)
T ss_pred CCCEEEEEcCCC--CCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 369999999977 7888888764 445567766555554
No 355
>PRK06185 hypothetical protein; Provisional
Probab=59.91 E-value=10 Score=38.78 Aligned_cols=33 Identities=18% Similarity=0.356 Sum_probs=25.2
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 331 d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
+..|+|+|||.+|...|-.|.+ .|+ ++.++|++
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~-----~G~-------~v~liE~~ 38 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLAR-----AGV-------DVTVLEKH 38 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEecC
Confidence 4579999999999999977654 365 46666665
No 356
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=59.79 E-value=11 Score=37.84 Aligned_cols=34 Identities=29% Similarity=0.271 Sum_probs=27.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCcc
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi 378 (461)
.|+|+|||.+|+.+|-.|.+ .| .++.++|+....
T Consensus 2 dvvIIGaGi~G~s~A~~La~-----~g-------~~V~l~e~~~~~ 35 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAK-----HG-------KKTLLLEQFDLP 35 (380)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeccCCC
Confidence 48999999999999988764 25 368889987553
No 357
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=59.75 E-value=35 Score=33.85 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=24.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
||.|+|+|..|.++|..+... |. +++++|+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~-----G~-------~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA-----GY-------QLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC-----CC-------eEEEEcCC
Confidence 588999999999999988753 53 57777764
No 358
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=59.54 E-value=12 Score=38.60 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=19.0
Q ss_pred cceEEEeCcchHHHHHHHHHHH
Q 012553 331 EHRFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 331 d~riv~~GAGsAgiGiA~ll~~ 352 (461)
..+|+|+|||.||+..|-.|.+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~ 23 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHL 23 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHh
Confidence 3579999999999999988765
No 359
>PRK08244 hypothetical protein; Provisional
Probab=59.53 E-value=11 Score=40.27 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=18.6
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 012553 332 HRFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~ 352 (461)
..|+|+|||.+|+..|-.|..
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~ 23 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELAL 23 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHH
Confidence 469999999999999988865
No 360
>PLN02427 UDP-apiose/xylose synthase
Probab=59.35 E-value=29 Score=35.56 Aligned_cols=83 Identities=18% Similarity=0.267 Sum_probs=51.1
Q ss_pred HHHhCCCcccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChh-------hhhh
Q 012553 322 LKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF-------KKPW 393 (461)
Q Consensus 322 lk~~g~~l~d~riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~-------k~~f 393 (461)
+.+.||+++-.||+|.|| |-.|..+++.|+.. | ..+++.+|+.. .+...+.+. ..+|
T Consensus 5 ~~~~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~-----~------g~~V~~l~r~~----~~~~~l~~~~~~~~~~~~~~ 69 (386)
T PLN02427 5 LDLDGKPIKPLTICMIGAGGFIGSHLCEKLMTE-----T------PHKVLALDVYN----DKIKHLLEPDTVPWSGRIQF 69 (386)
T ss_pred hcCCCCcccCcEEEEECCcchHHHHHHHHHHhc-----C------CCEEEEEecCc----hhhhhhhccccccCCCCeEE
Confidence 557899999999999996 99999998888652 2 13677787531 000011100 1112
Q ss_pred cc-ccCCCCCHHHhhcccCCcEEEeccCC
Q 012553 394 AH-EHEPVNNLLDAVKVIKPTILIGSSGV 421 (461)
Q Consensus 394 A~-~~~~~~~L~eaV~~vkptvLIG~S~~ 421 (461)
.+ +-.....+.+++++ +|++|=+.+.
T Consensus 70 ~~~Dl~d~~~l~~~~~~--~d~ViHlAa~ 96 (386)
T PLN02427 70 HRINIKHDSRLEGLIKM--ADLTINLAAI 96 (386)
T ss_pred EEcCCCChHHHHHHhhc--CCEEEEcccc
Confidence 11 11122457788876 8999977764
No 361
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=59.32 E-value=23 Score=36.38 Aligned_cols=92 Identities=11% Similarity=0.060 Sum_probs=55.8
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhcccc---CCCCCHHHh
Q 012553 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDA 406 (461)
Q Consensus 330 ~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~---~~~~~L~ea 406 (461)
.-.++.|+|+|.-|-.-++.+... . .-++|+++|+. .++ ...+...+.+.. ....+..|+
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~--~--------~~~~v~V~~r~----~~~---~~~~~~~~~~~g~~v~~~~~~~ea 189 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRV--F--------DLEEVSVYCRT----PST---REKFALRASDYEVPVRAATDPREA 189 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc--C--------CCCEEEEECCC----HHH---HHHHHHHHHhhCCcEEEeCCHHHH
Confidence 357899999999877766555331 1 14688888873 222 223333222211 124689999
Q ss_pred hcccCCcEEEecc-CCCCCCCHHHHHHHhcCCCCcEEEEcC
Q 012553 407 VKVIKPTILIGSS-GVGRTFTKEVIEAMASFNEVVFQALLW 446 (461)
Q Consensus 407 V~~vkptvLIG~S-~~~g~Ft~evv~~Ma~~~erPIIF~Ls 446 (461)
++. .||+|-++ +....|..++++. -.-|-++.
T Consensus 190 v~~--aDiVitaT~s~~P~~~~~~l~~------g~~v~~vG 222 (325)
T TIGR02371 190 VEG--CDILVTTTPSRKPVVKADWVSE------GTHINAIG 222 (325)
T ss_pred hcc--CCEEEEecCCCCcEecHHHcCC------CCEEEecC
Confidence 986 89999654 3334788887743 33466664
No 362
>PRK06849 hypothetical protein; Provisional
Probab=59.19 E-value=7.7 Score=40.12 Aligned_cols=104 Identities=16% Similarity=0.101 Sum_probs=59.8
Q ss_pred cceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhcc-ccCC------CCC
Q 012553 331 EHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEP------VNN 402 (461)
Q Consensus 331 d~riv~~GAGs-AgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~-~~~~------~~~ 402 (461)
.++|+|.|++. .|+++|+.+.++ |. +++++|+...-.. +. ..+-..|-. +.+. ...
T Consensus 4 ~~~VLI~G~~~~~~l~iar~l~~~-----G~-------~Vi~~d~~~~~~~-~~---s~~~d~~~~~p~p~~d~~~~~~~ 67 (389)
T PRK06849 4 KKTVLITGARAPAALELARLFHNA-----GH-------TVILADSLKYPLS-RF---SRAVDGFYTIPSPRWDPDAYIQA 67 (389)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC-----CC-------EEEEEeCCchHHH-HH---HHhhhheEEeCCCCCCHHHHHHH
Confidence 47999999997 688998877653 54 7999999732100 00 000011111 1111 245
Q ss_pred HHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcCCCCchhhhh
Q 012553 403 LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLWLIRKFNFCS 455 (461)
Q Consensus 403 L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Lsnp~~~~~~~ 455 (461)
|.++++.-++|++|=++... ..+..+.+.-+.=+.++..++..+..|.
T Consensus 68 L~~i~~~~~id~vIP~~e~~-----~~~a~~~~~l~~~~~v~~~~~~~~~~~~ 115 (389)
T PRK06849 68 LLSIVQRENIDLLIPTCEEV-----FYLSHAKEELSAYCEVLHFDFELLLLLH 115 (389)
T ss_pred HHHHHHHcCCCEEEECChHH-----HhHHhhhhhhcCCcEEEcCCHHHHHHhh
Confidence 88888998999999877522 1222221111122456677888776664
No 363
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=59.17 E-value=9.4 Score=39.22 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=23.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
.|+|+|||.||+..|-.|.. .|+ ++.++|+.
T Consensus 4 dV~IVGaG~aGl~~A~~L~~-----~G~-------~v~viE~~ 34 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQG-----SGL-------EVLLLDGG 34 (405)
T ss_pred cEEEECccHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 68999999999999988754 364 46666654
No 364
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=58.97 E-value=27 Score=32.84 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=25.0
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 328 ~l~d~riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
.++..+++|.|| |..|..+|+.+++ .|. +++++++.
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~-----~G~-------~v~~~~r~ 40 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELAR-----AGA-------AVAIADLN 40 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHH-----CCC-------eEEEEeCC
Confidence 356678999998 6677777777654 353 57777763
No 365
>PRK07538 hypothetical protein; Provisional
Probab=58.89 E-value=11 Score=39.00 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=17.2
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 012553 333 RFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~ 352 (461)
+|+|+|||.||+..|-.|.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~ 21 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQ 21 (413)
T ss_pred eEEEECCCHHHHHHHHHHHh
Confidence 68999999999999977754
No 366
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=58.87 E-value=13 Score=39.04 Aligned_cols=86 Identities=9% Similarity=0.125 Sum_probs=47.1
Q ss_pred HHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccc--
Q 012553 319 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-- 396 (461)
Q Consensus 319 l~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~-- 396 (461)
..++.-....|.+.|++|+|.+.-..++++++.+ .|+. +..+-+. .... +.....+..+...
T Consensus 275 ~~~l~~~~~~l~gkrv~i~~~~~~~~~la~~l~e-----lGm~-------v~~~~~~---~~~~-~~~~~~~~~~~~~~~ 338 (410)
T cd01968 275 RPELAPYRARLEGKKAALYTGGVKSWSLVSALQD-----LGME-------VVATGTQ---KGTK-EDYERIKELLGEGTV 338 (410)
T ss_pred HHHHHHHHHHhCCCEEEEEcCCchHHHHHHHHHH-----CCCE-------EEEEecc---cCCH-HHHHHHHHHhCCCcE
Confidence 3344444456778999999988888999987643 4873 3333211 1111 0011111111000
Q ss_pred ---cCCCCCHHHhhcccCCcEEEeccC
Q 012553 397 ---HEPVNNLLDAVKVIKPTILIGSSG 420 (461)
Q Consensus 397 ---~~~~~~L~eaV~~vkptvLIG~S~ 420 (461)
..+...+.+.++..+||++||-|.
T Consensus 339 v~~~~~~~e~~~~i~~~~pDl~ig~s~ 365 (410)
T cd01968 339 IVDDANPRELKKLLKEKKADLLVAGGK 365 (410)
T ss_pred EEeCCCHHHHHHHHhhcCCCEEEECCc
Confidence 111124668888899999999765
No 367
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=58.87 E-value=9.5 Score=42.74 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=27.1
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 330 ~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
++..|+|+|||.||+..|-.|... .|+ ++.++|++
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~----~Gi-------~v~IiE~~ 65 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAF----PDI-------TTRIVERK 65 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcC----CCC-------cEEEEEcC
Confidence 356899999999999999887651 265 46778876
No 368
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=58.82 E-value=19 Score=36.41 Aligned_cols=89 Identities=18% Similarity=0.219 Sum_probs=56.5
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccccCCC-CCHH
Q 012553 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV-NNLL 404 (461)
Q Consensus 326 g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~-~~L~ 404 (461)
|..++ +++|+||=--|.+||+.|... + +|+++|-+ +|-+.+-.+.-.. ..+.
T Consensus 39 ~~~~k--~~lI~G~YltG~~iA~~L~~~-----------~--eV~lvDI~------------p~lk~ll~~~i~F~~~~~ 91 (252)
T PF06690_consen 39 GEEFK--QALIFGAYLTGNFIASALSKK-----------C--EVTLVDIH------------PHLKELLNENIKFMEFRN 91 (252)
T ss_pred ccccc--eEEEEEEEeehHHHHHHhccC-----------c--eEEEEeCc------------HHHHHHhcCCCceeeccC
Confidence 45555 899999999999999988542 2 89999974 2222222110000 1111
Q ss_pred HhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcCCCC
Q 012553 405 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLWLIR 449 (461)
Q Consensus 405 eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Lsnp~ 449 (461)
+ + .++||++|=++|-||+ +++.++... |=+|-.-||.
T Consensus 92 ~-~-~~~~DlIID~TGlGGv-~~~~Ls~~~-----p~v~IVEdP~ 128 (252)
T PF06690_consen 92 G-L-EGNPDLIIDTTGLGGV-DPDFLSKFN-----PKVFIVEDPK 128 (252)
T ss_pred C-C-CCCCCEEEECCCCCCC-CHHHHhccC-----CCEEEEECCC
Confidence 1 1 2369999999999985 999888763 4455555664
No 369
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=58.65 E-value=12 Score=39.55 Aligned_cols=33 Identities=30% Similarity=0.511 Sum_probs=23.2
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCcc
Q 012553 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (461)
Q Consensus 334 iv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi 378 (461)
|||+|+|.||+..|-.... .|+ ++.|+++.+-+
T Consensus 2 VVVvGgG~aG~~AAi~AAr-----~G~-------~VlLiE~~~~l 34 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAAR-----AGA-------KVLLIEKGGFL 34 (428)
T ss_dssp EEEE--SHHHHHHHHHHHH-----TTS--------EEEE-SSSSS
T ss_pred EEEECccHHHHHHHHHHHH-----CCC-------EEEEEECCccC
Confidence 7999999999999876654 363 78999988765
No 370
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=58.64 E-value=11 Score=44.89 Aligned_cols=34 Identities=24% Similarity=0.446 Sum_probs=27.5
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 330 ~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
...+|+|+|||.||+..|..|.. .|. ++.++|+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr-----~G~-------~VTV~Ek~ 569 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLAR-----AGH-------PVTVFEKK 569 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecc
Confidence 35799999999999999998865 253 68888875
No 371
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=58.62 E-value=22 Score=37.50 Aligned_cols=66 Identities=17% Similarity=0.191 Sum_probs=43.6
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccccCCCCCHHHh
Q 012553 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDA 406 (461)
Q Consensus 327 ~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~ea 406 (461)
..|++.+|.|+|-|+-|.++|+.+... |+ +++..|+.+ .+ .+..+. ..-...++.|+
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~-----G~-------~ViV~~r~~---~s----~~~A~~----~G~~v~sl~Ea 68 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDS-----GV-------EVVVGVRPG---KS----FEVAKA----DGFEVMSVSEA 68 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHC-----cC-------EEEEEECcc---hh----hHHHHH----cCCEECCHHHH
Confidence 357899999999999999999998753 65 566666532 11 111111 11112479999
Q ss_pred hcccCCcEEEe
Q 012553 407 VKVIKPTILIG 417 (461)
Q Consensus 407 V~~vkptvLIG 417 (461)
++. +|+++=
T Consensus 69 ak~--ADVV~l 77 (335)
T PRK13403 69 VRT--AQVVQM 77 (335)
T ss_pred Hhc--CCEEEE
Confidence 998 888873
No 372
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=58.56 E-value=6.1 Score=46.00 Aligned_cols=77 Identities=22% Similarity=0.319 Sum_probs=48.2
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhc-ccc--CCC--C
Q 012553 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA-HEH--EPV--N 401 (461)
Q Consensus 327 ~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA-~~~--~~~--~ 401 (461)
++|.++++.++|||+.|+-.-+-++.. |+.-.+. ..|.+.|-+ .|.++ +|+. .|- |+. ... .
T Consensus 426 eKL~~~~~FlVGaGAIGCE~LKN~am~-----Gvg~g~~-g~ItVTDmD-~IEkS---NLnR---QFLFR~~dVgk~KSe 492 (1013)
T KOG2012|consen 426 EKLADQKVFLVGAGAIGCELLKNFALM-----GVGCGNS-GKITVTDMD-HIEKS---NLNR---QFLFRPWDVGKPKSE 492 (1013)
T ss_pred HHHhhCcEEEEccchhhHHHHHhhhhe-----eeccCCC-CceEEeccc-hhhhc---cccc---eeeccccccCchHHH
Confidence 689999999999999998777666442 6643332 256666654 33333 2432 222 221 111 2
Q ss_pred CHHHhhcccCCcEEE
Q 012553 402 NLLDAVKVIKPTILI 416 (461)
Q Consensus 402 ~L~eaV~~vkptvLI 416 (461)
.-.+|+...+|++-|
T Consensus 493 ~AA~A~~~mNp~l~I 507 (1013)
T KOG2012|consen 493 VAAAAARGMNPDLNI 507 (1013)
T ss_pred HHHHHHHhcCCCcee
Confidence 467889999999987
No 373
>PRK05866 short chain dehydrogenase; Provisional
Probab=58.51 E-value=20 Score=35.47 Aligned_cols=38 Identities=26% Similarity=0.312 Sum_probs=25.8
Q ss_pred CCCcccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 326 GGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 326 g~~l~d~riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
+..+++.+++|.|| |-.|..+|+.+++ .| .+++++|++
T Consensus 35 ~~~~~~k~vlItGasggIG~~la~~La~-----~G-------~~Vi~~~R~ 73 (293)
T PRK05866 35 PVDLTGKRILLTGASSGIGEAAAEQFAR-----RG-------ATVVAVARR 73 (293)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHHH-----CC-------CEEEEEECC
Confidence 45577789999998 4555556666543 25 368888875
No 374
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=58.42 E-value=12 Score=39.53 Aligned_cols=31 Identities=26% Similarity=0.599 Sum_probs=23.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
.++|+|||.||+.+|..+.+. | .++.++|++
T Consensus 3 DvvIIGaG~aGlsaA~~La~~-----G-------~~V~viEk~ 33 (377)
T TIGR00031 3 DYIIVGAGLSGIVLANILAQL-----N-------KRVLVVEKR 33 (377)
T ss_pred cEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEecC
Confidence 589999999999999887642 4 356677763
No 375
>PRK06823 ornithine cyclodeaminase; Validated
Probab=58.23 E-value=26 Score=36.08 Aligned_cols=83 Identities=6% Similarity=0.074 Sum_probs=53.0
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccc---cCCCCCHHHh
Q 012553 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNLLDA 406 (461)
Q Consensus 330 ~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~---~~~~~~L~ea 406 (461)
.-.++.++|+|.-+...++.+... + . -++|++.|+. .++ ...+...+.+. .....+.+++
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v--~--~------i~~v~v~~r~----~~~---a~~~~~~~~~~~~~v~~~~~~~~a 189 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNV--T--D------CRQLWVWGRS----ETA---LEEYRQYAQALGFAVNTTLDAAEV 189 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhc--C--C------CCEEEEECCC----HHH---HHHHHHHHHhcCCcEEEECCHHHH
Confidence 457999999999988888776553 1 2 3688887773 222 22222222111 1123689999
Q ss_pred hcccCCcEEEeccC-CCCCCCHHHHH
Q 012553 407 VKVIKPTILIGSSG-VGRTFTKEVIE 431 (461)
Q Consensus 407 V~~vkptvLIG~S~-~~g~Ft~evv~ 431 (461)
++. +||++-+++ ...+|..++++
T Consensus 190 v~~--ADIV~taT~s~~P~~~~~~l~ 213 (315)
T PRK06823 190 AHA--ANLIVTTTPSREPLLQAEDIQ 213 (315)
T ss_pred hcC--CCEEEEecCCCCceeCHHHcC
Confidence 988 999997543 33478888886
No 376
>PRK10015 oxidoreductase; Provisional
Probab=58.22 E-value=11 Score=39.80 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=24.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
-.|+|+|||.||...|-.+.+ .|+ ++.++|+.
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~-----~G~-------~VlliEr~ 37 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMAR-----AGL-------DVLVIERG 37 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEecC
Confidence 469999999999999988754 364 46666654
No 377
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=58.22 E-value=33 Score=35.34 Aligned_cols=97 Identities=16% Similarity=0.052 Sum_probs=57.2
Q ss_pred ccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChh--hhhhcc-ccCCCCCHHH
Q 012553 330 AEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF--KKPWAH-EHEPVNNLLD 405 (461)
Q Consensus 330 ~d~riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~--k~~fA~-~~~~~~~L~e 405 (461)
+++||+|.|| |-.|..+++.|... |. +++.+|+..- ..+... ...+-. +.....++..
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~-----G~-------~V~~v~r~~~------~~~~~~~~~~~~~~~Dl~d~~~~~~ 81 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAE-----GH-------YIIASDWKKN------EHMSEDMFCHEFHLVDLRVMENCLK 81 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhC-----CC-------EEEEEEeccc------cccccccccceEEECCCCCHHHHHH
Confidence 4589999998 99999999988652 42 6888886431 001110 111111 1111233555
Q ss_pred hhcccCCcEEEeccCCCC--C---------------CCHHHHHHHhcCCCCcEEEEcC
Q 012553 406 AVKVIKPTILIGSSGVGR--T---------------FTKEVIEAMASFNEVVFQALLW 446 (461)
Q Consensus 406 aV~~vkptvLIG~S~~~g--~---------------Ft~evv~~Ma~~~erPIIF~Ls 446 (461)
++++ +|++|=+.+..+ . .|..+++++.++.-+.+||.=|
T Consensus 82 ~~~~--~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS 137 (370)
T PLN02695 82 VTKG--VDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASS 137 (370)
T ss_pred HHhC--CCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCc
Confidence 5654 899997765321 0 2356777777766678888643
No 378
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=58.19 E-value=34 Score=35.86 Aligned_cols=33 Identities=15% Similarity=0.395 Sum_probs=26.7
Q ss_pred cceEEEeC-cchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 331 EHRFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 331 d~riv~~G-AGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
..+|.|+| +|..|-.+|..+..+ |. .++++|++
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~-----G~-------~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLS-----GY-------QVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHC-----CC-------eEEEeCCC
Confidence 37899999 999999999988763 53 58888874
No 379
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=58.02 E-value=12 Score=41.93 Aligned_cols=34 Identities=21% Similarity=0.376 Sum_probs=27.2
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 330 ~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
...+|+|+|||.||+..|..+... |. ++.++|+.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~-----G~-------~Vtv~e~~ 225 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRK-----GH-------DVTIFDAN 225 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-----CC-------cEEEEecC
Confidence 457999999999999999888652 53 57788865
No 380
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=58.01 E-value=32 Score=35.24 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=19.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 012553 332 HRFLFLGAGEAGTGIAELIALE 353 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~ 353 (461)
.||.|+|||+.|.-.|-.|.++
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~ 22 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA 22 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC
Confidence 4899999999999998888764
No 381
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=57.99 E-value=15 Score=38.09 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=17.3
Q ss_pred EEEeCcchHHHHHHHHHHHH
Q 012553 334 FLFLGAGEAGTGIAELIALE 353 (461)
Q Consensus 334 iv~~GAGsAgiGiA~ll~~~ 353 (461)
|+|+|||.||+.+|-.+.+.
T Consensus 2 viIvGaG~AGl~lA~~L~~~ 21 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRA 21 (370)
T ss_pred EEEECccHHHHHHHHHHHhc
Confidence 78999999999999877643
No 382
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=57.99 E-value=16 Score=41.13 Aligned_cols=110 Identities=18% Similarity=0.148 Sum_probs=69.9
Q ss_pred CCcccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhcc----------
Q 012553 327 GTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---------- 395 (461)
Q Consensus 327 ~~l~d~riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~---------- 395 (461)
.-+++++|+|-|| ||.|-.+++++++. + .++|+++|+.=. ++..-.+++..
T Consensus 246 ~~~~gK~vLVTGagGSiGsel~~qil~~-----~------p~~i~l~~~~E~-------~~~~i~~el~~~~~~~~~~~~ 307 (588)
T COG1086 246 AMLTGKTVLVTGGGGSIGSELCRQILKF-----N------PKEIILFSRDEY-------KLYLIDMELREKFPELKLRFY 307 (588)
T ss_pred hHcCCCEEEEeCCCCcHHHHHHHHHHhc-----C------CCEEEEecCchH-------HHHHHHHHHHhhCCCcceEEE
Confidence 3477899999998 68999999999764 2 578999987411 22222233322
Q ss_pred --ccCCCCCHHHhhcccCCcEEEeccCCC---------------CCC-CHHHHHHHhcCCCCcEEEEcC-----CCCchh
Q 012553 396 --EHEPVNNLLDAVKVIKPTILIGSSGVG---------------RTF-TKEVIEAMASFNEVVFQALLW-----LIRKFN 452 (461)
Q Consensus 396 --~~~~~~~L~eaV~~vkptvLIG~S~~~---------------g~F-t~evv~~Ma~~~erPIIF~Ls-----np~~~~ 452 (461)
+-.+...+.+++++.|||+++=+.+-. ++| |+.++++- ..+.-.=...+| ||+|.|
T Consensus 308 igdVrD~~~~~~~~~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa-~~~~V~~~V~iSTDKAV~PtNvm 386 (588)
T COG1086 308 IGDVRDRDRVERAMEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAA-IKNGVKKFVLISTDKAVNPTNVM 386 (588)
T ss_pred ecccccHHHHHHHHhcCCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHH-HHhCCCEEEEEecCcccCCchHh
Confidence 112234699999999999999766532 234 44455443 333333344444 999998
Q ss_pred hhh
Q 012553 453 FCS 455 (461)
Q Consensus 453 ~~~ 455 (461)
-++
T Consensus 387 GaT 389 (588)
T COG1086 387 GAT 389 (588)
T ss_pred hHH
Confidence 776
No 383
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=57.93 E-value=53 Score=40.20 Aligned_cols=119 Identities=20% Similarity=0.276 Sum_probs=67.8
Q ss_pred HHHHHHHHhcCCCeeeeeecCCcc-------cHHHHHHHHcCCCceeccCCCchhHHHHHHHHHHHHHhCCCcccceEEE
Q 012553 264 EFMSAVKQNYGEKVLIQFEDFANH-------NAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLF 336 (461)
Q Consensus 264 efv~av~~~fGp~~lIq~EDf~~~-------~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~ 336 (461)
+.+++.-+.+++..+|| |++.. +-+++..+|.-.+++.|=|-+|.+-- .+
T Consensus 442 ~ViEaaLk~~~G~~IIN--SIs~~~~~~~~~~~~~l~~kyga~vV~m~~de~G~~~t----------------~e----- 498 (1229)
T PRK09490 442 EVIEAGLKCIQGKGIVN--SISLKEGEEKFIEHARLVRRYGAAVVVMAFDEQGQADT----------------RE----- 498 (1229)
T ss_pred HHHHHHHhhcCCCCEEE--eCCCCCCCccHHHHHHHHHHhCCCEEEEecCCCCCCCC----------------HH-----
Confidence 34445555666677776 44432 36677888888888888776775532 11
Q ss_pred eCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccccCCCCCHHHhhccc-----C
Q 012553 337 LGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI-----K 411 (461)
Q Consensus 337 ~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~v-----k 411 (461)
-=+.||+.+...+.++.|++ .++|+ +|.-=+ +-+ . ...+| ..++.+ ..|+|+.+ .
T Consensus 499 -----~r~~ia~r~~~~~~~~~Gi~----~~dIi-~Dplv~-~v~-t-~~ee~-~~~~~~------~leair~ik~~~P~ 558 (1229)
T PRK09490 499 -----RKIEICKRAYDILTEEVGFP----PEDII-FDPNIF-AVA-T-GIEEH-NNYAVD------FIEATRWIKQNLPH 558 (1229)
T ss_pred -----HHHHHHHHHHHHHHHHcCCC----HHHEE-EcCCcc-eee-c-ChHHH-HHHHHH------HHHHHHHHHHHCCC
Confidence 22468888888776557996 34555 776311 211 1 12222 233332 34555532 3
Q ss_pred CcEEEeccCCCCCC
Q 012553 412 PTILIGSSGVGRTF 425 (461)
Q Consensus 412 ptvLIG~S~~~g~F 425 (461)
..+..|+|...=-|
T Consensus 559 ~~~~~GlSNiSFgl 572 (1229)
T PRK09490 559 AKISGGVSNVSFSF 572 (1229)
T ss_pred CcEEEeeccccccC
Confidence 45889999876334
No 384
>PRK11445 putative oxidoreductase; Provisional
Probab=57.92 E-value=12 Score=38.14 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=17.7
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 012553 333 RFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~ 352 (461)
.|+|+|||.||...|..|..
T Consensus 3 dV~IvGaGpaGl~~A~~La~ 22 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAG 22 (351)
T ss_pred eEEEECCCHHHHHHHHHHhc
Confidence 58999999999999988754
No 385
>PRK10262 thioredoxin reductase; Provisional
Probab=57.75 E-value=9 Score=38.19 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=20.6
Q ss_pred cccceEEEeCcchHHHHHHHHHHH
Q 012553 329 LAEHRFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 329 l~d~riv~~GAGsAgiGiA~ll~~ 352 (461)
-+..+|+|+|||+||+..|..+..
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~ 27 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAAR 27 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHH
Confidence 356789999999999999988765
No 386
>PF04320 DUF469: Protein with unknown function (DUF469); InterPro: IPR007416 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.
Probab=57.65 E-value=9.3 Score=33.78 Aligned_cols=33 Identities=18% Similarity=0.476 Sum_probs=26.5
Q ss_pred CChhhhHHHHHHHHHHHHH---hcCCCeeeeeecCC
Q 012553 253 ATGQEYAELLDEFMSAVKQ---NYGEKVLIQFEDFA 285 (461)
Q Consensus 253 ~~g~~Y~~~idefv~av~~---~fGp~~lIq~EDf~ 285 (461)
++.++||.|+|+|+..|.+ .||+...-+||-|-
T Consensus 27 ~~~e~~D~~~D~fId~Ie~~gL~~~Ggg~~~~eG~v 62 (101)
T PF04320_consen 27 TSEEQIDAFVDAFIDVIEPNGLAFGGGGYEQWEGFV 62 (101)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEecCCccCEeEEE
Confidence 4568999999999998888 67777667777663
No 387
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=57.39 E-value=16 Score=37.28 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=27.8
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 329 l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
-..++|+|+|+|.||+.+|..+.. .| .++.++|+.
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~-----~g-------~~v~lie~~ 50 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLAC-----LG-------YEVHVYDKL 50 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHH-----CC-------CcEEEEeCC
Confidence 345799999999999999988764 24 368888875
No 388
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=57.37 E-value=41 Score=32.48 Aligned_cols=96 Identities=16% Similarity=0.162 Sum_probs=51.0
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhh----hhhcc-ccCCCCCHHHh
Q 012553 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK----KPWAH-EHEPVNNLLDA 406 (461)
Q Consensus 333 riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k----~~fA~-~~~~~~~L~ea 406 (461)
||+|.|| |..|..+++.+.+. | .+++++|+. .......+.... -.+.. +.....++.++
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~-----g-------~~V~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 65 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLES-----G-------HEVVVLDNL---SNGSPEALKRGERITRVTFVEGDLRDRELLDRL 65 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhC-----C-------CeEEEEeCC---CccchhhhhhhccccceEEEECCCCCHHHHHHH
Confidence 5788875 88888888877642 4 256667642 111001111110 01111 22223457777
Q ss_pred hcccCCcEEEeccCCCCC----------------CCHHHHHHHhcCCCCcEEE
Q 012553 407 VKVIKPTILIGSSGVGRT----------------FTKEVIEAMASFNEVVFQA 443 (461)
Q Consensus 407 V~~vkptvLIG~S~~~g~----------------Ft~evv~~Ma~~~erPIIF 443 (461)
++..++|++|=+.+.... .+..+++.|.+..-+.+||
T Consensus 66 ~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~ 118 (328)
T TIGR01179 66 FEEHKIDAVIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIF 118 (328)
T ss_pred HHhCCCcEEEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEE
Confidence 876679999865543211 1235567776655556776
No 389
>PRK12828 short chain dehydrogenase; Provisional
Probab=57.27 E-value=18 Score=33.29 Aligned_cols=36 Identities=22% Similarity=0.360 Sum_probs=25.3
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 328 ~l~d~riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
.+++.+++|.|| |..|..+|+.+++ .|. +++++|++
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~-----~G~-------~v~~~~r~ 40 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAA-----RGA-------RVALIGRG 40 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHH-----CCC-------eEEEEeCC
Confidence 466789999997 6667677776654 253 58888874
No 390
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=57.24 E-value=11 Score=38.50 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=17.8
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 012553 333 RFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~ 352 (461)
.|+|+|||.||+..|-.|.+
T Consensus 3 dv~IvGaG~aGl~~A~~L~~ 22 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQ 22 (403)
T ss_pred CEEEECccHHHHHHHHHHhc
Confidence 58999999999999988765
No 391
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=57.24 E-value=12 Score=39.51 Aligned_cols=40 Identities=25% Similarity=0.395 Sum_probs=33.6
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCc
Q 012553 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (461)
Q Consensus 327 ~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GL 377 (461)
.++++|=||++|||..|.-++++|+.. | .++|-+||-+-+
T Consensus 70 ~kl~~syVVVVG~GgVGSwv~nmL~RS-----G------~qKi~iVDfdqV 109 (430)
T KOG2018|consen 70 EKLTNSYVVVVGAGGVGSWVANMLLRS-----G------VQKIRIVDFDQV 109 (430)
T ss_pred HHhcCcEEEEEecCchhHHHHHHHHHh-----c------CceEEEechhhc
Confidence 468899999999999999999999864 6 478888887644
No 392
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=57.22 E-value=14 Score=39.55 Aligned_cols=85 Identities=16% Similarity=0.264 Sum_probs=54.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChh---hhhhc-cccCCCCCHHHhh
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF---KKPWA-HEHEPVNNLLDAV 407 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~---k~~fA-~~~~~~~~L~eaV 407 (461)
.+||++|||-.|..+|..|++- |- .+|++.|+. .+-.+.+... +...+ -+..+...|.++|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~-----~d------~~V~iAdRs----~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li 66 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN-----GD------GEVTIADRS----KEKCARIAELIGGKVEALQVDAADVDALVALI 66 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC-----CC------ceEEEEeCC----HHHHHHHHhhccccceeEEecccChHHHHHHH
Confidence 4799999999999999998752 31 589988873 1110111111 11111 1334456799999
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHhc
Q 012553 408 KVIKPTILIGSSGVGRTFTKEVIEAMAS 435 (461)
Q Consensus 408 ~~vkptvLIG~S~~~g~Ft~evv~~Ma~ 435 (461)
++ .|+.|.+-.+ -++..++++-.+
T Consensus 67 ~~--~d~VIn~~p~--~~~~~i~ka~i~ 90 (389)
T COG1748 67 KD--FDLVINAAPP--FVDLTILKACIK 90 (389)
T ss_pred hc--CCEEEEeCCc--hhhHHHHHHHHH
Confidence 98 6998876553 578888877654
No 393
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=57.05 E-value=13 Score=40.18 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=33.1
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 327 ~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
+.|++.+|+++|+|+.|.-+++-|+.. |+ .+|.++|.+
T Consensus 16 ~~L~~s~VlliG~gglGsEilKNLvL~-----GI------g~~tIvD~~ 53 (425)
T cd01493 16 AALESAHVCLLNATATGTEILKNLVLP-----GI------GSFTIVDGS 53 (425)
T ss_pred HHHhhCeEEEEcCcHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 457899999999999999999999875 75 689999986
No 394
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=56.98 E-value=12 Score=38.50 Aligned_cols=33 Identities=15% Similarity=0.398 Sum_probs=24.7
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 331 d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
...|+|+|||.||+..|-.|.. .|+ ++.++|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~-----~G~-------~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKE-----SDL-------RIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHh-----CCC-------EEEEEcCC
Confidence 3479999999999999977654 365 46666653
No 395
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=56.85 E-value=17 Score=38.91 Aligned_cols=96 Identities=14% Similarity=0.037 Sum_probs=53.6
Q ss_pred HHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccccCC
Q 012553 320 AALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP 399 (461)
Q Consensus 320 ~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~ 399 (461)
.++.-....|...|++++|-+.-..++++.+.+ .|+.. ..+..-+..... ..+.+. .-+. .+
T Consensus 300 ~~l~~~~~~l~Gkrvai~~~~~~~~~l~~~l~e-----lGm~v----~~~~~~~~~~~~-----~~~~~~-~~~~---~D 361 (432)
T TIGR01285 300 DAMLDTHFFLGGKKVAIAAEPDLLAAWATFFTS-----MGAQI----VAAVTTTGSPLL-----QKLPVE-TVVI---GD 361 (432)
T ss_pred HHHHHHHHhhCCCEEEEEcCHHHHHHHHHHHHH-----CCCEE----EEEEeCCCCHHH-----HhCCcC-cEEe---CC
Confidence 333344446678999999988888999998754 47732 112211111000 001110 0111 12
Q ss_pred CCCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEE
Q 012553 400 VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQ 442 (461)
Q Consensus 400 ~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPII 442 (461)
...+++.++..+||++||-|-. + .+|....-|.|
T Consensus 362 ~~~l~~~i~~~~~dliig~s~~-----k----~~A~~l~ip~i 395 (432)
T TIGR01285 362 LEDLEDLACAAGADLLITNSHG-----R----ALAQRLALPLV 395 (432)
T ss_pred HHHHHHHHhhcCCCEEEECcch-----H----HHHHHcCCCEE
Confidence 2457888988899999987642 2 34444456776
No 396
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=56.79 E-value=13 Score=38.95 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=24.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcC
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs 374 (461)
.|+|+|||+||+..|..+... | .++.++|+
T Consensus 3 DvvVIG~G~aGl~aA~~la~~-----G-------~~v~lie~ 32 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQL-----G-------LKVALVEK 32 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEec
Confidence 489999999999999888652 5 37888887
No 397
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=56.79 E-value=12 Score=39.26 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=26.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
-.+||+|||+||+..|..+.+. | .++.++|++
T Consensus 4 yDvvVIGgGpaGl~aA~~la~~-----g-------~~V~lie~~ 35 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAKA-----G-------WRVALIEQS 35 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHHC-----C-------CeEEEEcCC
Confidence 3689999999999999988653 4 468888875
No 398
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=56.76 E-value=9.3 Score=40.32 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=25.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
||||+|||.||+..|+.|.+. +- .-+|.++|+.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~-----~~-----~~~I~li~~~ 35 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRL-----DK-----ESDIIIFEKD 35 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhh-----CC-----CCCEEEEECC
Confidence 899999999999999998642 11 2368888875
No 399
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=56.73 E-value=14 Score=37.13 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=27.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCc
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GL 377 (461)
..|+|+|||.+|+.+|-.|.+. | .++.++|+...
T Consensus 4 ~dv~IIGgGi~G~s~A~~L~~~-----g-------~~V~lie~~~~ 37 (376)
T PRK11259 4 YDVIVIGLGSMGSAAGYYLARR-----G-------LRVLGLDRFMP 37 (376)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEecccC
Confidence 4689999999999999877652 5 37999998643
No 400
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=56.49 E-value=27 Score=35.10 Aligned_cols=105 Identities=14% Similarity=0.150 Sum_probs=56.5
Q ss_pred cccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhcc-ccCCCCCHHHh
Q 012553 329 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDA 406 (461)
Q Consensus 329 l~d~riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~-~~~~~~~L~ea 406 (461)
+++.+|+|.|| |..|..+++.|+.. |- ..+++++|+...-...-...+...+..+.. +-....++.++
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~-----g~-----~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~ 71 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLEN-----YN-----PKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRA 71 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHh-----CC-----CcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHH
Confidence 45678999997 78888888887653 30 136888876421100000001000111111 21222457778
Q ss_pred hcccCCcEEEeccCCCC----CC------------CHHHHHHHhcCCCCcEEEEc
Q 012553 407 VKVIKPTILIGSSGVGR----TF------------TKEVIEAMASFNEVVFQALL 445 (461)
Q Consensus 407 V~~vkptvLIG~S~~~g----~F------------t~evv~~Ma~~~erPIIF~L 445 (461)
++. +|++|=+.+... .+ +..+++++.+..-+.|||.=
T Consensus 72 ~~~--iD~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~S 124 (324)
T TIGR03589 72 LRG--VDYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALS 124 (324)
T ss_pred Hhc--CCEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 876 899997765431 11 23556666665556788753
No 401
>PRK07589 ornithine cyclodeaminase; Validated
Probab=56.45 E-value=48 Score=34.81 Aligned_cols=83 Identities=14% Similarity=0.178 Sum_probs=52.4
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhcccc---CCCCCHHHh
Q 012553 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDA 406 (461)
Q Consensus 330 ~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~---~~~~~L~ea 406 (461)
.-.++.|+|+|.-+..-++.++... . -++|++.|+. .. ....+.+.+.... ....+++++
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr----~------i~~V~v~~r~----~~---~a~~~~~~~~~~~~~v~~~~~~~~a 190 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALL----G------IEEIRLYDID----PA---ATAKLARNLAGPGLRIVACRSVAEA 190 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhC----C------ceEEEEEeCC----HH---HHHHHHHHHHhcCCcEEEeCCHHHH
Confidence 3478999999998887777665531 2 3678877662 11 1222333332211 113689999
Q ss_pred hcccCCcEEEeccCCC---CCCCHHHHH
Q 012553 407 VKVIKPTILIGSSGVG---RTFTKEVIE 431 (461)
Q Consensus 407 V~~vkptvLIG~S~~~---g~Ft~evv~ 431 (461)
++. +||++.++... .+|..++++
T Consensus 191 v~~--ADIIvtaT~S~~~~Pvl~~~~lk 216 (346)
T PRK07589 191 VEG--ADIITTVTADKTNATILTDDMVE 216 (346)
T ss_pred Hhc--CCEEEEecCCCCCCceecHHHcC
Confidence 998 99999876422 368888775
No 402
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=56.38 E-value=15 Score=39.72 Aligned_cols=34 Identities=15% Similarity=0.348 Sum_probs=27.2
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 330 ~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
...+++|+|||.||+..|..|... |. +++++|+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~-----g~-------~V~v~e~~ 175 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRA-----GH-------TVTVFERE 175 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHc-----CC-------eEEEEecC
Confidence 357999999999999999888642 53 58888865
No 403
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=56.34 E-value=14 Score=41.24 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=28.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCc
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GL 377 (461)
..|+|+|||.+|+.+|-.|.+. |. ++.++|++..
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~-----G~-------~V~VlE~~~~ 294 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARR-----GW-------QVTLYEADEA 294 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHC-----CC-------eEEEEecCCC
Confidence 4799999999999999988652 53 6999998743
No 404
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=56.33 E-value=12 Score=40.26 Aligned_cols=34 Identities=29% Similarity=0.425 Sum_probs=27.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCc
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GL 377 (461)
-.|||+|+|.+|.++|..+... |+ ++.+++++-+
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~r-----G~-------~V~LlEk~d~ 40 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAGR-----GL-------KVLLCEKDDL 40 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHhC-----CC-------cEEEEECCCC
Confidence 4699999999999999998653 65 6889997743
No 405
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=56.32 E-value=10 Score=37.06 Aligned_cols=39 Identities=33% Similarity=0.505 Sum_probs=33.3
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 326 g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
-++|++-|++++|+|.-|..+++.++.+ |+ .+++++|.+
T Consensus 25 q~~l~~s~vlvvG~GglG~~~~~~la~a-----Gv------g~l~i~D~d 63 (254)
T COG0476 25 QQKLKDSRVLVVGAGGLGSPAAKYLALA-----GV------GKLTIVDFD 63 (254)
T ss_pred HHHHhhCCEEEEecChhHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 3678899999999999999999999875 64 569999986
No 406
>PRK09186 flagellin modification protein A; Provisional
Probab=56.30 E-value=23 Score=33.32 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=22.6
Q ss_pred cccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 329 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 329 l~d~riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
+++.+++|.|| |..|..+|+.++. .|. ++++++++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~-----~g~-------~v~~~~r~ 37 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILE-----AGG-------IVIAADID 37 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHH-----CCC-------EEEEEecC
Confidence 45788999998 4555566666643 253 56777653
No 407
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=56.27 E-value=13 Score=39.16 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=24.5
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 334 iv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
+||+|||+||+..|..+.+. | .++.++|++
T Consensus 3 vvVIGaGpaG~~aA~~aa~~-----g-------~~v~lie~~ 32 (463)
T TIGR02053 3 LVIIGSGAAAFAAAIKAAEL-----G-------ASVAMVERG 32 (463)
T ss_pred EEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 79999999999999887652 5 378888875
No 408
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=56.19 E-value=7.7 Score=40.72 Aligned_cols=47 Identities=19% Similarity=0.231 Sum_probs=29.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHh---cCCChhhccc----eEEEEcCCCcc
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQ---TKAPVEETRK----KICLVDSKGLI 378 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~---~Gls~eeA~~----~i~lvDs~GLi 378 (461)
++|+|+|||-||+..|..|.++--+. .-++.=||+. +++-....|..
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~ 55 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFI 55 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEE
Confidence 37999999999999999997641100 0145555555 35544444543
No 409
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=56.18 E-value=34 Score=37.70 Aligned_cols=97 Identities=18% Similarity=0.059 Sum_probs=63.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhcccc-C---CCCCHHHhhc
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-E---PVNNLLDAVK 408 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~-~---~~~~L~eaV~ 408 (461)
+|-|+|-|..|.++|.-|+.. |. ++.+.|+. .++ .++..+.++... . ...++.|+++
T Consensus 8 ~IG~IGLG~MG~~mA~nL~~~-----G~-------~V~V~NRt----~~k---~~~l~~~~~~~Ga~~~~~a~s~~e~v~ 68 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIAEK-----GF-------PISVYNRT----TSK---VDETVERAKKEGNLPLYGFKDPEDFVL 68 (493)
T ss_pred CEEEEeeHHHHHHHHHHHHhC-----CC-------eEEEECCC----HHH---HHHHHHhhhhcCCcccccCCCHHHHHh
Confidence 689999999999999999763 64 57777762 222 222222222211 1 3468999997
Q ss_pred cc-CCcEEEeccCCCCCCCHHHHHHHhcC-CCCcEEEEcCCCC
Q 012553 409 VI-KPTILIGSSGVGRTFTKEVIEAMASF-NEVVFQALLWLIR 449 (461)
Q Consensus 409 ~v-kptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIF~Lsnp~ 449 (461)
.+ +|+++| ++-..+.-.++|+..+.+. .+--||.=+||.+
T Consensus 69 ~l~~~dvIi-~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~ 110 (493)
T PLN02350 69 SIQKPRSVI-ILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEW 110 (493)
T ss_pred cCCCCCEEE-EECCCcHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 64 589888 4555556677777655543 4567999999875
No 410
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=56.13 E-value=45 Score=33.10 Aligned_cols=63 Identities=14% Similarity=0.350 Sum_probs=40.0
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccccCCCCCHHHhhcccC
Q 012553 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (461)
Q Consensus 333 riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vk 411 (461)
||+|.|| |-.|..+++.+... | +++.+|+..-. +.-+-.....+.++++..+
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~-----g--------~V~~~~~~~~~--------------~~~Dl~d~~~~~~~~~~~~ 54 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPL-----G--------NLIALDVHSTD--------------YCGDFSNPEGVAETVRKIR 54 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhcc-----C--------CEEEecccccc--------------ccCCCCCHHHHHHHHHhcC
Confidence 7999997 99999998877531 2 36666654110 0011112234777888888
Q ss_pred CcEEEeccCCC
Q 012553 412 PTILIGSSGVG 422 (461)
Q Consensus 412 ptvLIG~S~~~ 422 (461)
||++|=+.+..
T Consensus 55 ~D~Vih~Aa~~ 65 (299)
T PRK09987 55 PDVIVNAAAHT 65 (299)
T ss_pred CCEEEECCccC
Confidence 99999766543
No 411
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=56.11 E-value=14 Score=37.64 Aligned_cols=33 Identities=27% Similarity=0.394 Sum_probs=25.1
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 331 d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
...|+|+|||.+|+..|-.|.. .|+ ++.++|+.
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~-----~G~-------~v~liE~~ 39 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALAR-----AGA-------SVALVAPE 39 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhc-----CCC-------eEEEEeCC
Confidence 3579999999999999977654 364 56677765
No 412
>PLN02676 polyamine oxidase
Probab=55.99 E-value=29 Score=37.64 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.0
Q ss_pred ccceEEEeCcchHHHHHHHHHHH
Q 012553 330 AEHRFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 330 ~d~riv~~GAGsAgiGiA~ll~~ 352 (461)
...+++|+|||.+|++.|..|.+
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~ 47 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSE 47 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH
Confidence 35579999999999999998875
No 413
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=55.97 E-value=14 Score=40.49 Aligned_cols=34 Identities=32% Similarity=0.541 Sum_probs=27.5
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCC
Q 012553 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (461)
Q Consensus 331 d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~G 376 (461)
+-.|+|+|+|..|++||..+... |+ ++.++|+..
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~r-----G~-------~V~LlEk~d 39 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALR-----GL-------RCILVERHD 39 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHc-----CC-------eEEEEECCC
Confidence 35699999999999999988753 64 688899853
No 414
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=55.97 E-value=43 Score=35.73 Aligned_cols=97 Identities=18% Similarity=0.372 Sum_probs=64.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCC------hhhhhhcc--ccCC----
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ------HFKKPWAH--EHEP---- 399 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~------~~k~~fA~--~~~~---- 399 (461)
.||.++|+|.=|.+||+++-.-.. +.+.-+..=++|.++.. ..++..+|+ ++.-+|-. +.++
T Consensus 22 ~kV~ivGsGnWGsaiaki~~~n~~---~~~~f~~~Vrmwv~ee~---i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvA 95 (372)
T KOG2711|consen 22 LKVCIVGSGNWGSAIAKIVGENVK---EFPIFDPQVRMWVFEEE---INGEAEKLTEIINSRHENVKYLPGIKLPENVVA 95 (372)
T ss_pred eEEEEEccChHHHHHHHHHhhhhh---hccccCceeeEEEeccc---cCChhHHHHHHhccccccccccCCccCCCCeEe
Confidence 799999999999999999976532 33444556689998874 222111121 12223332 1122
Q ss_pred CCCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCC
Q 012553 400 VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNE 438 (461)
Q Consensus 400 ~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~e 438 (461)
..+|.||++. +|+||= +.|-.|+..+++.+..+.+
T Consensus 96 v~dl~ea~~d--ADilvf--~vPhQf~~~ic~~l~g~vk 130 (372)
T KOG2711|consen 96 VPDLVEAAKD--ADILVF--VVPHQFIPRICEQLKGYVK 130 (372)
T ss_pred cchHHHHhcc--CCEEEE--eCChhhHHHHHHHHhcccC
Confidence 2689999998 999983 3345799999999986543
No 415
>PRK14694 putative mercuric reductase; Provisional
Probab=55.87 E-value=14 Score=39.18 Aligned_cols=33 Identities=12% Similarity=0.241 Sum_probs=26.3
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 331 d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
+-.++|+|||+||+..|..+.+. | .++.++|+.
T Consensus 6 ~~dviVIGaG~aG~~aA~~l~~~-----g-------~~v~lie~~ 38 (468)
T PRK14694 6 NLHIAVIGSGGSAMAAALKATER-----G-------ARVTLIERG 38 (468)
T ss_pred cCCEEEECCCHHHHHHHHHHHhC-----C-------CcEEEEEcc
Confidence 44699999999999999988763 4 367788864
No 416
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=55.79 E-value=13 Score=40.88 Aligned_cols=32 Identities=16% Similarity=0.344 Sum_probs=25.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCC
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~G 376 (461)
.|+|+|||.||+..|..+... | .++.++|+..
T Consensus 6 DVvIIGgGpAGL~AA~~lar~-----g-------~~V~liE~~~ 37 (555)
T TIGR03143 6 DLIIIGGGPAGLSAGIYAGRA-----K-------LDTLIIEKDD 37 (555)
T ss_pred cEEEECCCHHHHHHHHHHHHC-----C-------CCEEEEecCC
Confidence 689999999999999877542 4 3688888653
No 417
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=55.70 E-value=14 Score=38.94 Aligned_cols=32 Identities=31% Similarity=0.380 Sum_probs=25.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
-.+||+|||+||+..|..+.+. | +++.++|+.
T Consensus 4 yDvvIIG~G~aGl~aA~~l~~~-----g-------~~v~lie~~ 35 (460)
T PRK06292 4 YDVIVIGAGPAGYVAARRAAKL-----G-------KKVALIEKG 35 (460)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 4689999999999999887652 4 468888873
No 418
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=55.58 E-value=43 Score=31.41 Aligned_cols=148 Identities=16% Similarity=0.192 Sum_probs=87.6
Q ss_pred hhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecC--ceeeccCCCCCC--ccccchhhhhHHHhhCCCCCCceeeE
Q 012553 153 IFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDG--ERILGLGDLGCQ--GMGIPVGKLALYTALGGIRPSACLPI 228 (461)
Q Consensus 153 i~r~p~glyis~~d~g~i~~~l~nwp~~~v~viVVTDG--~rILGLGDlG~~--GmgI~~GKl~Ly~a~gGI~P~~~lPI 228 (461)
+-+++.|+-++..|.....+.++.+...++.|+.+-.. ..-..+--.|.+ .+|-..|+..+-....+ ..|
T Consensus 52 i~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~~~~~~~~~~~v~~d~~~~G~~~a~~l~~~~~~~------~~v 125 (257)
T PF13407_consen 52 ISQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSDEAPDSPRAAYVGTDNYEAGKLAAEYLAEKLGAK------GKV 125 (257)
T ss_dssp HHTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESSTHHTTSTSSEEEEE-HHHHHHHHHHHHHHHHTTT------EEE
T ss_pred HHhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEeccccccccceeeeeccHHHHHHHHHHHHHHHhccC------ceE
Confidence 56779999999999988888998888888988887555 111222223333 35666677666666554 445
Q ss_pred EeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeee---eecCCcccHHHHHHHHcCCCceecc
Q 012553 229 TVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQ---FEDFANHNAFELLAKYGTTHLVFND 305 (461)
Q Consensus 229 ~LDvGTnne~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~~lIq---~EDf~~~~af~iL~ryr~~~~~FnD 305 (461)
++=.|..+ .....+.++-|.+++++ ++.-.++. ..+.....+.+..+++-...| -|
T Consensus 126 ~~~~~~~~------------------~~~~~~r~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~--~~ 184 (257)
T PF13407_consen 126 LILSGSPG------------------NPNTQERLEGFRDALKE-YPGVEIVDEYEYTDWDPEDARQAIENLLQANP--VD 184 (257)
T ss_dssp EEEESSTT------------------SHHHHHHHHHHHHHHHH-CTTEEEEEEEEECTTSHHHHHHHHHHHHHHTT--EE
T ss_pred EeccCCCC------------------chHHHHHHHHHHHHHhh-cceeeeeeeeeccCCCHHHHHHHHHHhhhcCC--ce
Confidence 54444211 12233457778888887 64322222 236777777776666632222 11
Q ss_pred CCCchhHHHHHHHHHHHHHhCC
Q 012553 306 DIQGTASVVLAGVVAALKLIGG 327 (461)
Q Consensus 306 DiQGTaaV~LAgll~Alk~~g~ 327 (461)
=|=.+....+-|++.|++-.|+
T Consensus 185 ~i~~~~~~~~~g~~~al~~~g~ 206 (257)
T PF13407_consen 185 AIIACNDGMALGAAQALQQAGR 206 (257)
T ss_dssp EEEESSHHHHHHHHHHHHHTTC
T ss_pred EEEeCCChHHHHHHHHHHHcCC
Confidence 1112223444477888888877
No 419
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=55.55 E-value=15 Score=37.74 Aligned_cols=31 Identities=26% Similarity=0.452 Sum_probs=25.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
+|+|+|||-+|+.+|-.+... | .+|.++|+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~-----g-------~~V~vle~~ 32 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQA-----G-------HEVTVIDRQ 32 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHC-----C-------CEEEEEeCC
Confidence 699999999999999887642 4 368888885
No 420
>PRK06545 prephenate dehydrogenase; Validated
Probab=55.50 E-value=38 Score=35.13 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 012553 332 HRFLFLGAGEAGTGIAELIALE 353 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~ 353 (461)
.+|.|+|+|..|.++|..+...
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~ 22 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA 22 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc
Confidence 3799999999999999998653
No 421
>PRK05868 hypothetical protein; Validated
Probab=55.47 E-value=14 Score=37.98 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=17.7
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 012553 332 HRFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~ 352 (461)
.+|+|+|||.||+..|-.|..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~ 22 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGR 22 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 379999999999999977754
No 422
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=55.46 E-value=27 Score=36.62 Aligned_cols=96 Identities=16% Similarity=0.191 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhc
Q 012553 315 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 394 (461)
Q Consensus 315 LAgll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA 394 (461)
.|+.++|=.+..+. --++.|+|+|.-+-..++.+... .+ -++|++.|+. .+....+...+.
T Consensus 116 AasavAa~~LA~~d--a~~laiIGaG~qA~~ql~a~~~v----~~------~~~I~i~~r~-------~~~~e~~a~~l~ 176 (330)
T COG2423 116 AASAVAAKYLARKD--ASTLAIIGAGAQARTQLEALKAV----RD------IREIRVYSRD-------PEAAEAFAARLR 176 (330)
T ss_pred HHHHHHHHHhccCC--CcEEEEECCcHHHHHHHHHHHhh----CC------ccEEEEEcCC-------HHHHHHHHHHHH
Confidence 34455555555543 24678999998765554444332 23 3567776663 111222222222
Q ss_pred cc----cCCCCCHHHhhcccCCcEEEeccC-CCCCCCHHHHH
Q 012553 395 HE----HEPVNNLLDAVKVIKPTILIGSSG-VGRTFTKEVIE 431 (461)
Q Consensus 395 ~~----~~~~~~L~eaV~~vkptvLIG~S~-~~g~Ft~evv~ 431 (461)
+. -....++++||++ +|+++.++. ....|+.++|+
T Consensus 177 ~~~~~~v~a~~s~~~av~~--aDiIvt~T~s~~Pil~~~~l~ 216 (330)
T COG2423 177 KRGGEAVGAADSAEEAVEG--ADIVVTATPSTEPVLKAEWLK 216 (330)
T ss_pred hhcCccceeccCHHHHhhc--CCEEEEecCCCCCeecHhhcC
Confidence 22 2345799999998 999998753 22478888876
No 423
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=55.36 E-value=12 Score=38.52 Aligned_cols=39 Identities=15% Similarity=0.200 Sum_probs=33.6
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCC
Q 012553 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (461)
Q Consensus 327 ~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~G 376 (461)
++|...+|+|+|+|..|.-+|+-|+.+ |+ .+|.++|.+-
T Consensus 22 ~KL~~SrVLVVG~GGLGsEVAKnLaLA-----GV------GsItIvDdD~ 60 (287)
T PTZ00245 22 QQLMHTSVALHGVAGAAAEAAKNLVLA-----GV------RAVAVADEGL 60 (287)
T ss_pred HHHhhCeEEEECCCchHHHHHHHHHHc-----CC------CeEEEecCCc
Confidence 578899999999999999999999775 64 6899999863
No 424
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=55.35 E-value=19 Score=36.09 Aligned_cols=43 Identities=14% Similarity=0.244 Sum_probs=31.1
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhh-c---cceEEEEcCCCc
Q 012553 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEE-T---RKKICLVDSKGL 377 (461)
Q Consensus 330 ~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~ee-A---~~~i~lvDs~GL 377 (461)
+..||+++|||.-|.-+++.|+.. |+...+ . --+|.++|.+-+
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~-----G~a~~~~G~~~g~~i~lvD~D~V 56 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARL-----HHALKALGHPGGLAVTVYDDDTV 56 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHc-----cccccccCCCCCCEEEEECCCEE
Confidence 567999999999999999999875 321100 1 128999998743
No 425
>PRK13938 phosphoheptose isomerase; Provisional
Probab=55.08 E-value=1e+02 Score=29.71 Aligned_cols=37 Identities=19% Similarity=0.012 Sum_probs=27.1
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHh--cCCCCcEEEEcCCCC
Q 012553 411 KPTILIGSSGVGRTFTKEVIEAMA--SFNEVVFQALLWLIR 449 (461)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma--~~~erPIIF~Lsnp~ 449 (461)
+-|++|++|..| =|+++++.+. +...-|+|.=-+||.
T Consensus 113 ~~DllI~iS~SG--~t~~vi~a~~~Ak~~G~~vI~iT~~~~ 151 (196)
T PRK13938 113 PGDTLFAISTSG--NSMSVLRAAKTARELGVTVVAMTGESG 151 (196)
T ss_pred CCCEEEEEcCCC--CCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 479999999977 6899998874 455567666555553
No 426
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=55.07 E-value=42 Score=34.74 Aligned_cols=37 Identities=24% Similarity=0.157 Sum_probs=23.0
Q ss_pred CHHHhhcccCCcE-EEeccCCCCCCCHHHHHHHhcCCCCcEEE
Q 012553 402 NLLDAVKVIKPTI-LIGSSGVGRTFTKEVIEAMASFNEVVFQA 443 (461)
Q Consensus 402 ~L~eaV~~vkptv-LIG~S~~~g~Ft~evv~~Ma~~~erPIIF 443 (461)
.|.+.... .|+ ++|-|-..+ |-.-++++|+. ..|||+
T Consensus 312 el~~~y~~--aDi~~v~~S~~e~-~g~~~lEAma~--G~PVI~ 349 (425)
T PRK05749 312 ELGLLYAI--ADIAFVGGSLVKR-GGHNPLEPAAF--GVPVIS 349 (425)
T ss_pred HHHHHHHh--CCEEEECCCcCCC-CCCCHHHHHHh--CCCEEE
Confidence 45566665 777 666554222 44447888874 688886
No 427
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=55.06 E-value=87 Score=32.83 Aligned_cols=138 Identities=13% Similarity=0.180 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhcCCCeeeeeecCCcccHHHHHHHHcCCCceecc-CCCchhHHHHHHHHHHHHHhC-CCcccceEEEeCc
Q 012553 262 LDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFND-DIQGTASVVLAGVVAALKLIG-GTLAEHRFLFLGA 339 (461)
Q Consensus 262 idefv~av~~~fGp~~lIq~EDf~~~~af~iL~ryr~~~~~FnD-DiQGTaaV~LAgll~Alk~~g-~~l~d~riv~~GA 339 (461)
+.+.+..+ .+| .++++ +-... +.+.+.+.+| ..+||+|- |-..=-.=+||=++.-.+..| +++++.+|.++|-
T Consensus 90 l~Dtarvl-s~y-~D~Iv-~R~~~-~~~~~~~a~~-~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~~l~g~~ia~vGD 164 (336)
T PRK03515 90 IKDTARVL-GRM-YDGIQ-YRGYG-QEIVETLAEY-AGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLAYAGD 164 (336)
T ss_pred HHHHHHHH-HHh-CcEEE-EEeCC-hHHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCcCCCEEEEeCC
Confidence 33444443 345 44433 33332 2233333444 47999993 222223446677776666666 4799999999998
Q ss_pred chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccc-cC---CCCCHHHhhcccCCcEE
Q 012553 340 GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HE---PVNNLLDAVKVIKPTIL 415 (461)
Q Consensus 340 GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~-~~---~~~~L~eaV~~vkptvL 415 (461)
+.- .+++-++.+..+ .|+ ++.++-.+|+.-.. + +-+.-+.+++. .. -..++.|++++ +||+
T Consensus 165 ~~~--~v~~Sl~~~~~~-~g~-------~v~~~~P~~~~~~~--~-~~~~~~~~~~~~g~~i~~~~d~~ea~~~--aDvv 229 (336)
T PRK03515 165 ARN--NMGNSLLEAAAL-TGL-------DLRLVAPKACWPEA--A-LVTECRALAQKNGGNITLTEDIAEGVKG--ADFI 229 (336)
T ss_pred CcC--cHHHHHHHHHHH-cCC-------EEEEECCchhcCcH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEE
Confidence 632 366766666554 464 68888887773321 1 11111233332 11 13689999998 9999
Q ss_pred Eecc
Q 012553 416 IGSS 419 (461)
Q Consensus 416 IG~S 419 (461)
.-.+
T Consensus 230 ytd~ 233 (336)
T PRK03515 230 YTDV 233 (336)
T ss_pred EecC
Confidence 9864
No 428
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=54.96 E-value=15 Score=38.10 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=18.2
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 012553 332 HRFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~ 352 (461)
.+|+|+|||.||+..|-.|.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~ 23 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHK 23 (390)
T ss_pred ceEEEECccHHHHHHHHHHHH
Confidence 579999999999999977754
No 429
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=54.95 E-value=12 Score=35.56 Aligned_cols=36 Identities=28% Similarity=0.357 Sum_probs=25.0
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 328 ~l~d~riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
++.+.+++|.|| |.-|..||+.+++ .|. +++++|++
T Consensus 3 ~l~~~~vlItGas~~iG~~ia~~l~~-----~G~-------~v~~~~r~ 39 (257)
T PRK07067 3 RLQGKVALLTGAASGIGEAVAERYLA-----EGA-------RVVIADIK 39 (257)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHH-----cCC-------EEEEEcCC
Confidence 467889999997 5566667766654 253 67888764
No 430
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=54.95 E-value=9.6 Score=41.91 Aligned_cols=44 Identities=32% Similarity=0.312 Sum_probs=31.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCC--ChhhccceE-----EEEcCCCcccc
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKA--PVEETRKKI-----CLVDSKGLIVS 380 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gl--s~eeA~~~i-----~lvDs~GLi~~ 380 (461)
+||+|+|||-||++.|..|.++ |. +.-||+.++ -..|++|..++
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~-----g~~vt~~ea~~~~GGk~~s~~~~dg~~~E 51 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADA-----GYDVTLYEARDRLGGKVASWRDSDGNHVE 51 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhC-----CCceEEEeccCccCceeeeeecCCCCeee
Confidence 5899999999999999999875 65 344555432 12556666654
No 431
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=54.93 E-value=15 Score=38.99 Aligned_cols=31 Identities=29% Similarity=0.453 Sum_probs=25.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
|++|+|+|+||+..|..+.+. | .++.++|+.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~-----g-------~~V~lie~~ 32 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQN-----G-------KNVTLIDEA 32 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhC-----C-------CcEEEEECC
Confidence 899999999999999887652 5 368889875
No 432
>PRK06834 hypothetical protein; Provisional
Probab=54.90 E-value=15 Score=39.60 Aligned_cols=34 Identities=26% Similarity=0.513 Sum_probs=26.1
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 330 ~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
.+..|+|+|||.+|+..|-.|... |+ ++.++|+.
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~-----G~-------~v~vlEr~ 35 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALA-----GV-------DVAIVERR 35 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHC-----CC-------cEEEEecC
Confidence 457899999999999999888653 65 45566654
No 433
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=54.64 E-value=16 Score=37.60 Aligned_cols=35 Identities=17% Similarity=0.367 Sum_probs=27.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCC
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~G 376 (461)
..|+|+|||.+|+.+|-.|.+.. .| .++.++|+..
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~---~g-------~~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERY---PG-------ARIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhC---CC-------CeEEEEeCCC
Confidence 46999999999999998886531 13 4789999863
No 434
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=54.63 E-value=13 Score=39.73 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=20.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
+|+|+|||+||+-.|-.+.. .| .++.+++++
T Consensus 2 dviIIGgGaAGl~aA~~aa~-----~g-------~~V~vlE~~ 32 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAE-----KG-------ARVLVLERN 32 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHH-----TT---------EEEE-SS
T ss_pred cEEEECCCHHHHHHHHHHHh-----CC-------CCEEEEeCC
Confidence 58999999999999888744 25 367777775
No 435
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=54.50 E-value=27 Score=39.73 Aligned_cols=46 Identities=17% Similarity=0.027 Sum_probs=30.1
Q ss_pred HhhcccCCcEEEeccCCCCCCCHHHHHHHhcCCCCcEEEEcCCCCchh
Q 012553 405 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVVFQALLWLIRKFN 452 (461)
Q Consensus 405 eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF~Lsnp~~~~ 452 (461)
+.-+.++|+++|..++.+ +.-.-+.+-.++-+|=|.+=..||-.++
T Consensus 405 ~l~~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~~g~HffnP~~~~ 450 (699)
T TIGR02440 405 DIEQECAAHTIFASNTSS--LPIGQIAAAASRPENVIGLHYFSPVEKM 450 (699)
T ss_pred HHHhhCCCCcEEEeCCCC--CCHHHHHHhcCCcccEEEEecCCccccC
Confidence 333456799999877754 4444444433566777888889997654
No 436
>PRK06841 short chain dehydrogenase; Provisional
Probab=54.46 E-value=20 Score=33.78 Aligned_cols=36 Identities=31% Similarity=0.447 Sum_probs=25.5
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 328 ~l~d~riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
++++.+++|.|| |..|..+|+.+.+ .|. +++++++.
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~-----~G~-------~Vi~~~r~ 48 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAA-----KGA-------RVALLDRS 48 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 467889999997 6666677776653 253 57777764
No 437
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=54.38 E-value=10 Score=37.03 Aligned_cols=35 Identities=17% Similarity=0.402 Sum_probs=24.4
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccc
Q 012553 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIV 379 (461)
Q Consensus 334 iv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~ 379 (461)
++|+|+|+||.-+|..|.+. | ..+|.++.+-+-..
T Consensus 3 ~iIVGsG~~G~v~A~rLs~~-----~------~~~VlvlEaG~~~~ 37 (296)
T PF00732_consen 3 YIIVGSGAGGSVVASRLSEA-----G------NKKVLVLEAGPRYP 37 (296)
T ss_dssp EEEES-SHHHHHHHHHHTTS-----T------TS-EEEEESSBSCT
T ss_pred EEEECcCHHHHHHHHHHhhC-----C------CCcEEEEEccccCc
Confidence 78999999999999988531 2 35788887765443
No 438
>PRK06392 homoserine dehydrogenase; Provisional
Probab=54.37 E-value=56 Score=33.98 Aligned_cols=81 Identities=17% Similarity=0.277 Sum_probs=48.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHH-HhcCCChhhccceEEEEcCCCccccCCcCCCChhh-hhhccc----cCCCC--CHH
Q 012553 333 RFLFLGAGEAGTGIAELIALEIS-KQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK-KPWAHE----HEPVN--NLL 404 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~-~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k-~~fA~~----~~~~~--~L~ 404 (461)
||.++|.|..|-+++++|.+.-. ++.|+. .+=+-+.|++|.+...+. ++..+ ..+... ..... ++.
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~----l~VVaVsds~g~l~~~~G--ldl~~l~~~~~~g~l~~~~~~~~~~~ 75 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNG----ISVVSVSDSKLSYYNERG--LDIGKIISYKEKGRLEEIDYEKIKFD 75 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCC----eEEEEEEECCCcccCCcC--CChHHHHHHHhcCccccCCCCcCCHH
Confidence 79999999999999999865210 112321 223556799998887652 33211 011110 01112 566
Q ss_pred HhhcccCCcEEEeccC
Q 012553 405 DAVKVIKPTILIGSSG 420 (461)
Q Consensus 405 eaV~~vkptvLIG~S~ 420 (461)
+.++ .++||+|=+++
T Consensus 76 ~ll~-~~~DVvVE~t~ 90 (326)
T PRK06392 76 EIFE-IKPDVIVDVTP 90 (326)
T ss_pred HHhc-CCCCEEEECCC
Confidence 6665 58999998874
No 439
>PRK05993 short chain dehydrogenase; Provisional
Probab=54.35 E-value=27 Score=33.94 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=22.3
Q ss_pred cceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 331 EHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 331 d~riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
..+++|.|| |..|..+|+.+.+ .|. ++++++++
T Consensus 4 ~k~vlItGasggiG~~la~~l~~-----~G~-------~Vi~~~r~ 37 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQS-----DGW-------RVFATCRK 37 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHH-----CCC-------EEEEEECC
Confidence 357899998 6666667766643 252 68888764
No 440
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=54.10 E-value=14 Score=39.97 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.0
Q ss_pred cceEEEeCcchHHHHHHHHHHH
Q 012553 331 EHRFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 331 d~riv~~GAGsAgiGiA~ll~~ 352 (461)
..+|+|+|||.+|+..|-.|..
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~ 44 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQ 44 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHh
Confidence 3579999999999999988764
No 441
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=54.03 E-value=10 Score=38.81 Aligned_cols=35 Identities=17% Similarity=0.331 Sum_probs=25.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCC
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~G 376 (461)
.+|||+|+|.||+..|+.|... + ..-+|.+++...
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~-----~-----~~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQ-----D-----AHIPITLITADS 37 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhh-----C-----cCCCEEEEeCCC
Confidence 4899999999999999988542 1 123677776544
No 442
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=54.03 E-value=24 Score=29.67 Aligned_cols=84 Identities=12% Similarity=0.135 Sum_probs=48.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccccCCCCCHHHhhcccC
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~eaV~~vk 411 (461)
.||.|+|+|..|......+...- .+ .+=..++|.+. +......+.|-- +...++.|.++.-+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~---~~------~~v~~v~d~~~-------~~~~~~~~~~~~--~~~~~~~~ll~~~~ 62 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSS---PD------FEVVAVCDPDP-------ERAEAFAEKYGI--PVYTDLEELLADED 62 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTT---TT------EEEEEEECSSH-------HHHHHHHHHTTS--EEESSHHHHHHHTT
T ss_pred CEEEEECCcHHHHHHHHHHHhcC---CC------cEEEEEEeCCH-------HHHHHHHHHhcc--cchhHHHHHHHhhc
Confidence 38999999999777755554320 11 12345666631 112222222222 24578999999878
Q ss_pred CcEEEeccCCCCCCCHHHHHHHhc
Q 012553 412 PTILIGSSGVGRTFTKEVIEAMAS 435 (461)
Q Consensus 412 ptvLIG~S~~~g~Ft~evv~~Ma~ 435 (461)
+|+++ +++.. ..-.++++...+
T Consensus 63 ~D~V~-I~tp~-~~h~~~~~~~l~ 84 (120)
T PF01408_consen 63 VDAVI-IATPP-SSHAEIAKKALE 84 (120)
T ss_dssp ESEEE-EESSG-GGHHHHHHHHHH
T ss_pred CCEEE-EecCC-cchHHHHHHHHH
Confidence 99988 44444 355666666554
No 443
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=53.98 E-value=15 Score=38.94 Aligned_cols=32 Identities=22% Similarity=0.223 Sum_probs=26.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
-.+||+|||+||...|..+.+. | .++.++|+.
T Consensus 5 ydvvVIG~GpaG~~aA~~aa~~-----G-------~~v~lie~~ 36 (472)
T PRK05976 5 YDLVIIGGGPGGYVAAIRAGQL-----G-------LKTALVEKG 36 (472)
T ss_pred ccEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEEcc
Confidence 4689999999999999887652 5 478899975
No 444
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.94 E-value=18 Score=38.94 Aligned_cols=25 Identities=36% Similarity=0.542 Sum_probs=21.6
Q ss_pred CcccceEEEeCcchHHHHHHHHHHH
Q 012553 328 TLAEHRFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 328 ~l~d~riv~~GAGsAgiGiA~ll~~ 352 (461)
.+...||+|+|+|-+|.++|+.+..
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~ 36 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSE 36 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHH
Confidence 3566789999999999999999865
No 445
>PRK06138 short chain dehydrogenase; Provisional
Probab=53.90 E-value=28 Score=32.55 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=24.3
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 328 ~l~d~riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
.|++.+++|.|| |.-|..+|+.+++ .|. ++++++++
T Consensus 2 ~~~~k~~lItG~sg~iG~~la~~l~~-----~G~-------~v~~~~r~ 38 (252)
T PRK06138 2 RLAGRVAIVTGAGSGIGRATAKLFAR-----EGA-------RVVVADRD 38 (252)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHH-----CCC-------eEEEecCC
Confidence 367789999998 5566666666643 252 67877764
No 446
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=53.88 E-value=11 Score=32.12 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=27.2
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCC
Q 012553 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (461)
Q Consensus 328 ~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~G 376 (461)
+|++.+++|+|+|..|..=+++++++ | -++.++...-
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~-----g-------A~v~vis~~~ 40 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEA-----G-------AKVTVISPEI 40 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCC-----T-------BEEEEEESSE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhC-----C-------CEEEEECCch
Confidence 57899999999999999888887653 3 3788777754
No 447
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=53.72 E-value=16 Score=36.91 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=25.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCC
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~G 376 (461)
.|+|+|||-+|+.+|-.|.+. | .++.++|+..
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~-----G-------~~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARR-----G-------LSVTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCCC
Confidence 489999999999999888652 5 3688888763
No 448
>PLN02568 polyamine oxidase
Probab=53.65 E-value=8.8 Score=42.25 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=20.8
Q ss_pred ccceEEEeCcchHHHHHHHHHHHH
Q 012553 330 AEHRFLFLGAGEAGTGIAELIALE 353 (461)
Q Consensus 330 ~d~riv~~GAGsAgiGiA~ll~~~ 353 (461)
+..+|+|+|||.||++.|..|...
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~ 27 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTS 27 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhc
Confidence 346899999999999999999764
No 449
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=53.36 E-value=13 Score=39.91 Aligned_cols=35 Identities=34% Similarity=0.599 Sum_probs=27.7
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 331 d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
.+||||+|+|-+|+..|..+.... + .-+|.+||++
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~------~----~~~itLVd~~ 37 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKL------P----DVEITLVDRR 37 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcC------C----CCcEEEEeCC
Confidence 579999999999999999886532 1 1368899985
No 450
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=53.08 E-value=15 Score=37.65 Aligned_cols=20 Identities=30% Similarity=0.288 Sum_probs=17.5
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 012553 333 RFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~ 352 (461)
.|+|+|||.||...|-.|..
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~ 22 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQ 22 (374)
T ss_pred cEEEECCCHHHHHHHHHHHc
Confidence 58999999999999987754
No 451
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=52.89 E-value=53 Score=32.51 Aligned_cols=32 Identities=16% Similarity=0.288 Sum_probs=25.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
.+|.|+|+|..|..+|..+... |. +++++|++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~-----g~-------~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKA-----GY-------SLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHC-----CC-------eEEEEcCC
Confidence 4799999999999999998652 42 56777764
No 452
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=52.74 E-value=17 Score=37.84 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=25.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
.|+|+|||.||+.+|..|.++ |. .+.++|+-
T Consensus 3 siaIVGaGiAGl~aA~~L~~a-----G~-------~vtV~eKg 33 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREA-----GR-------EVTVFEKG 33 (331)
T ss_pred cEEEEccchHHHHHHHHHHhc-----Cc-------EEEEEEcC
Confidence 489999999999999998764 64 46777764
No 453
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=52.60 E-value=25 Score=36.26 Aligned_cols=59 Identities=19% Similarity=0.153 Sum_probs=34.1
Q ss_pred cCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcC
Q 012553 305 DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (461)
Q Consensus 305 DDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs 374 (461)
|++.+.-+=-+|.-+.+.........+.+++|+|||+.|+..+.+... .| .++|+++|.
T Consensus 143 ~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~-----~G------a~~Viv~d~ 201 (350)
T COG1063 143 DEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKL-----LG------ASVVIVVDR 201 (350)
T ss_pred ChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHH-----cC------CceEEEeCC
Confidence 444444444445444442222222233399999999999987433322 35 368998887
No 454
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=52.34 E-value=13 Score=42.36 Aligned_cols=36 Identities=17% Similarity=0.196 Sum_probs=27.5
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 328 ~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
.-+..+|+|+|||.||+..|-.|.+. |+ ++.++++.
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r~-----Gi-------~V~V~Er~ 113 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKKK-----GF-------DVLVFEKD 113 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHhc-----CC-------eEEEEecc
Confidence 34568899999999999999888653 65 46666653
No 455
>PRK06126 hypothetical protein; Provisional
Probab=52.21 E-value=18 Score=39.12 Aligned_cols=34 Identities=26% Similarity=0.379 Sum_probs=26.1
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 330 ~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
.+.+|+|+|||.+|+..|-.|.. .|+ ++.++|+.
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~-----~G~-------~v~viEr~ 39 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGR-----RGV-------DSILVERK 39 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEeCC
Confidence 45789999999999999987754 365 46666654
No 456
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=52.11 E-value=91 Score=28.66 Aligned_cols=35 Identities=26% Similarity=0.222 Sum_probs=24.4
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHhc--CCCCcEEEEcCC
Q 012553 411 KPTILIGSSGVGRTFTKEVIEAMAS--FNEVVFQALLWL 447 (461)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma~--~~erPIIF~Lsn 447 (461)
+-|++|++|..| -|+++++.+.. ...-|+|.==+|
T Consensus 101 ~~Dv~I~iS~SG--~t~~~i~~~~~ak~~Ga~vI~IT~~ 137 (177)
T cd05006 101 PGDVLIGISTSG--NSPNVLKALEAAKERGMKTIALTGR 137 (177)
T ss_pred CCCEEEEEeCCC--CCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 379999999877 78999998853 334565544333
No 457
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=52.04 E-value=21 Score=38.26 Aligned_cols=34 Identities=26% Similarity=0.503 Sum_probs=26.7
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 330 ~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
...+|+|+|+|.||+..|..+.. .|. ++.++|+.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~-----~G~-------~V~i~e~~ 173 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILAR-----AGV-------QVVVFDRH 173 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH-----cCC-------eEEEEecC
Confidence 56799999999999999988754 253 46777765
No 458
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=51.98 E-value=47 Score=33.63 Aligned_cols=75 Identities=13% Similarity=0.223 Sum_probs=47.6
Q ss_pred ccceEEEeC-cchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhcccc-------CCCC
Q 012553 330 AEHRFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-------EPVN 401 (461)
Q Consensus 330 ~d~riv~~G-AGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~-------~~~~ 401 (461)
...+||.+. .++.++|-+-- +|.. .|++ ++++|+.+ . .+++.-..+|... .-..
T Consensus 3 ~~i~iVLVep~~~gNIG~vAR---aMKN-fGl~------eL~LV~Pr-------~-~~~eeA~a~A~gA~dile~A~i~~ 64 (242)
T COG0565 3 ENIRIVLVEPSHPGNIGSVAR---AMKN-FGLS------ELRLVNPR-------A-GLDEEARALAAGARDILENAKIVD 64 (242)
T ss_pred CccEEEEEcCCCCccHHHHHH---HHHh-CCcc------eEEEECCC-------C-CCCHHHHHHhccchhhhccCeeec
Confidence 345666665 46677775433 3322 4874 68888874 2 2455555555421 1237
Q ss_pred CHHHhhcccCCcEEEeccCCCCC
Q 012553 402 NLLDAVKVIKPTILIGSSGVGRT 424 (461)
Q Consensus 402 ~L~eaV~~vkptvLIG~S~~~g~ 424 (461)
||+|||.. .+.+||+|+....
T Consensus 65 tL~eAl~d--~~~v~aTtar~r~ 85 (242)
T COG0565 65 TLEEALAD--CDLVVATTARSRD 85 (242)
T ss_pred CHHHHhcC--CCEEEEeccccCc
Confidence 99999998 9999999976653
No 459
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=51.91 E-value=22 Score=35.80 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=30.3
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccc
Q 012553 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIV 379 (461)
Q Consensus 330 ~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~ 379 (461)
...+|+|+|||-+|+.+|-.|.+. |. +|.++|++..-.
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~-----G~-------~V~vie~~~~~~ 40 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAER-----GA-------DVTVLEAGEAGG 40 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHc-----CC-------EEEEEecCccCC
Confidence 356899999999999999888653 53 889999876643
No 460
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=51.87 E-value=24 Score=31.03 Aligned_cols=31 Identities=29% Similarity=0.423 Sum_probs=25.0
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCC
Q 012553 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (461)
Q Consensus 334 iv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~G 376 (461)
|+|+|||+.|.-+|-.|.++ | .++.++++..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-----g-------~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-----G-------HDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-----T-------CEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHC-----C-------CceEEEEccc
Confidence 78999999999999888653 3 4688888765
No 461
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=51.81 E-value=20 Score=40.11 Aligned_cols=35 Identities=26% Similarity=0.472 Sum_probs=28.2
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCC
Q 012553 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (461)
Q Consensus 330 ~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~G 376 (461)
...||+|+|+|.||+..|..+... |. ++.++|+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~-----G~-------~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARA-----GV-------QVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHc-----CC-------cEEEEeCCC
Confidence 579999999999999999888753 53 577787663
No 462
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=51.75 E-value=17 Score=39.44 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=19.8
Q ss_pred ccceEEEeCcchHHHHHHHHHHH
Q 012553 330 AEHRFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 330 ~d~riv~~GAGsAgiGiA~ll~~ 352 (461)
.+.+|+|+|||.+|+..|..|..
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~ 31 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQ 31 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH
Confidence 35689999999999999988765
No 463
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=51.62 E-value=22 Score=36.55 Aligned_cols=38 Identities=18% Similarity=0.306 Sum_probs=29.1
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCc
Q 012553 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (461)
Q Consensus 330 ~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GL 377 (461)
++-.|+|+|||.+|+.+|-.|.+. .|. +++.++|+..+
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~----~g~------~~V~vle~~~~ 66 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKE----HGI------TNVAVLEKGWL 66 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHh----cCC------CeEEEEEcccc
Confidence 345799999999999999888652 242 47999998643
No 464
>PRK07190 hypothetical protein; Provisional
Probab=51.33 E-value=21 Score=38.68 Aligned_cols=33 Identities=27% Similarity=0.311 Sum_probs=24.2
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 331 d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
...|+|+|||.+|+..|-.+.. .|+ ++.++|+.
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar-----~Gi-------~V~llEr~ 37 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQL-----CGL-------NTVIVDKS 37 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHH-----cCC-------CEEEEeCC
Confidence 3579999999999998876543 365 35666654
No 465
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=51.28 E-value=54 Score=32.76 Aligned_cols=82 Identities=13% Similarity=0.124 Sum_probs=47.6
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCcc-ccCCcCCCCh------hhhhhcc-ccC
Q 012553 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI-VSSRKDSLQH------FKKPWAH-EHE 398 (461)
Q Consensus 328 ~l~d~riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi-~~~R~~~L~~------~k~~fA~-~~~ 398 (461)
+++..+|+|.|| |-.|..+++.|+.. |. +++.+|+..-- ...+...+.. .+..+.. +..
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~~-----G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 70 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLSK-----GY-------EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLS 70 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHC-----CC-------EEEEEecccccccccchhhhccccccccCceEEEEecCC
Confidence 456789999997 88999998888752 53 57777654210 0000000100 0111111 212
Q ss_pred CCCCHHHhhcccCCcEEEeccCC
Q 012553 399 PVNNLLDAVKVIKPTILIGSSGV 421 (461)
Q Consensus 399 ~~~~L~eaV~~vkptvLIG~S~~ 421 (461)
...++.++++..+||++|=+++.
T Consensus 71 d~~~~~~~~~~~~~d~Vih~A~~ 93 (340)
T PLN02653 71 DASSLRRWLDDIKPDEVYNLAAQ 93 (340)
T ss_pred CHHHHHHHHHHcCCCEEEECCcc
Confidence 23467788888889999988765
No 466
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=51.25 E-value=17 Score=38.15 Aligned_cols=33 Identities=24% Similarity=0.452 Sum_probs=26.9
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 331 d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
.-.++|+|||+||+..|..+.+. | .++.++|++
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~-----G-------~~v~liE~~ 37 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKL-----G-------KRVAVIERY 37 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEecc
Confidence 34699999999999999887653 5 478899975
No 467
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=51.07 E-value=1.3e+02 Score=30.81 Aligned_cols=113 Identities=19% Similarity=0.267 Sum_probs=68.9
Q ss_pred HHHHHHHHcCCCceeccC-CCchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccc
Q 012553 289 AFELLAKYGTTHLVFNDD-IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 367 (461)
Q Consensus 289 af~iL~ryr~~~~~FnDD-iQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~ 367 (461)
+.+.+.+| .++||+|=+ -..=-.=+|+=++.-.+..| .+++.||+++|-.. .+++-++.++.+ .|+
T Consensus 107 ~~~~~a~~-~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g-~l~g~~v~~vGd~~---~v~~Sl~~~l~~-~g~------- 173 (304)
T TIGR00658 107 DVEELAKY-ASVPVINGLTDLFHPCQALADLLTIIEHFG-KLKGVKVVYVGDGN---NVCNSLMLAGAK-LGM------- 173 (304)
T ss_pred HHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhC-CCCCcEEEEEeCCC---chHHHHHHHHHH-cCC-------
Confidence 34444444 468999942 22222345666666555555 49999999999863 377777777665 464
Q ss_pred eEEEEcCCCccccCCcCCCChhhhhhccc-c---CCCCCHHHhhcccCCcEEEecc
Q 012553 368 KICLVDSKGLIVSSRKDSLQHFKKPWAHE-H---EPVNNLLDAVKVIKPTILIGSS 419 (461)
Q Consensus 368 ~i~lvDs~GLi~~~R~~~L~~~k~~fA~~-~---~~~~~L~eaV~~vkptvLIG~S 419 (461)
++.++-.+++.-.. ..-+.-+.+++. . ....++.+++++ +||+.-.+
T Consensus 174 ~v~~~~P~~~~~~~---~~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvvy~~~ 224 (304)
T TIGR00658 174 DVVVATPEGYEPDA---DIVKKAQEIAKENGGSVELTHDPVEAVKG--ADVIYTDV 224 (304)
T ss_pred EEEEECCchhcCCH---HHHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEEcC
Confidence 78888887763321 111112233332 1 123689999998 99998764
No 468
>PRK06199 ornithine cyclodeaminase; Validated
Probab=51.01 E-value=68 Score=33.99 Aligned_cols=84 Identities=18% Similarity=0.154 Sum_probs=53.2
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccc------cCCCCCH
Q 012553 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE------HEPVNNL 403 (461)
Q Consensus 330 ~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~------~~~~~~L 403 (461)
.-.++.++|+|.-+...++.++... .. -++|++.|+. . ++...+.+.+.+. -....+.
T Consensus 154 da~~l~iiG~G~QA~~~l~a~~~v~---~~------i~~V~v~~r~----~---~~a~~f~~~~~~~~~~~~~v~~~~s~ 217 (379)
T PRK06199 154 DSKVVGLLGPGVMGKTILAAFMAVC---PG------IDTIKIKGRG----Q---KSLDSFATWVAETYPQITNVEVVDSI 217 (379)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhc---CC------ccEEEEECCC----H---HHHHHHHHHHHHhcCCCceEEEeCCH
Confidence 3478999999998888777665531 01 3678877773 1 1223333333322 1124789
Q ss_pred HHhhcccCCcEEEeccC--C-----CCCCCHHHHH
Q 012553 404 LDAVKVIKPTILIGSSG--V-----GRTFTKEVIE 431 (461)
Q Consensus 404 ~eaV~~vkptvLIG~S~--~-----~g~Ft~evv~ 431 (461)
+|+|+. +||++-+++ . ..+|..++++
T Consensus 218 ~eav~~--ADIVvtaT~s~~~~~s~~Pv~~~~~lk 250 (379)
T PRK06199 218 EEVVRG--SDIVTYCNSGETGDPSTYPYVKREWVK 250 (379)
T ss_pred HHHHcC--CCEEEEccCCCCCCCCcCcEecHHHcC
Confidence 999988 999997542 1 1478888876
No 469
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=50.91 E-value=18 Score=32.98 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=19.5
Q ss_pred CcccceEEEeCcchHHHHHHHHHHH
Q 012553 328 TLAEHRFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 328 ~l~d~riv~~GAGsAgiGiA~ll~~ 352 (461)
.+++++|+|+|+|..|+-+|..|..
T Consensus 164 ~~~~k~V~VVG~G~SA~d~a~~l~~ 188 (203)
T PF13738_consen 164 DFKGKRVVVVGGGNSAVDIAYALAK 188 (203)
T ss_dssp GCTTSEEEEE--SHHHHHHHHHHTT
T ss_pred hcCCCcEEEEcChHHHHHHHHHHHh
Confidence 6778999999999999988877754
No 470
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=50.83 E-value=20 Score=38.52 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=21.8
Q ss_pred cccceEEEeCcchHHHHHHHHHHH
Q 012553 329 LAEHRFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 329 l~d~riv~~GAGsAgiGiA~ll~~ 352 (461)
++++||+|+|.|-.|.++|++|..
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~ 29 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRA 29 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHH
Confidence 567899999999999999999875
No 471
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=50.45 E-value=19 Score=42.81 Aligned_cols=34 Identities=15% Similarity=0.185 Sum_probs=27.9
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 330 ~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
+..+|+|+|||.||+..|..+... |. ++.++|+.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~-----G~-------~VtV~E~~ 462 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKY-----GV-------DVTVYEAL 462 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-----CC-------cEEEEecC
Confidence 467999999999999999988753 53 67788875
No 472
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=50.39 E-value=76 Score=34.00 Aligned_cols=116 Identities=9% Similarity=-0.031 Sum_probs=66.8
Q ss_pred cceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccc--eEEEEcCCCccccCCcC----CCChhhhhhccccCCCCCH
Q 012553 331 EHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRK--KICLVDSKGLIVSSRKD----SLQHFKKPWAHEHEPVNNL 403 (461)
Q Consensus 331 d~riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~--~i~lvDs~GLi~~~R~~----~L~~~k~~fA~~~~~~~~L 403 (461)
-.||.|+|| |..|..+|-.|+.. |+-.+ -+ -+.|+|.+- ..++.+ .|.+-.-++.....-..+-
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~-----~l~~~--~~ei~L~L~diD~--~~~~a~g~a~DL~d~a~~~~~~v~i~~~~ 114 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASG-----EVFGQ--DQPIALKLLGSER--SKEALEGVAMELEDSLYPLLREVSIGIDP 114 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc-----cccCC--CCceEEEEeccCc--cchhhhHHHHHHHHhhhhhcCceEEecCC
Confidence 479999999 99999999987653 54111 01 344553321 111100 1222221222111001234
Q ss_pred HHhhcccCCcEEEeccCCC---CC-----------CCHHHHHHHhcCC-CCcEEEEcCCCCchhhhhhh
Q 012553 404 LDAVKVIKPTILIGSSGVG---RT-----------FTKEVIEAMASFN-EVVFQALLWLIRKFNFCSLF 457 (461)
Q Consensus 404 ~eaV~~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~-erPIIF~Lsnp~~~~~~~~~ 457 (461)
.+.++. .|++|=+.+.+ |- +=+++.+.+.++. ..-||+--|||-..+-.-+.
T Consensus 115 y~~~kd--aDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v~~ 181 (387)
T TIGR01757 115 YEVFED--ADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIAM 181 (387)
T ss_pred HHHhCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHHHH
Confidence 566777 89998666554 21 1256777777755 89999999999987755443
No 473
>PTZ00188 adrenodoxin reductase; Provisional
Probab=50.36 E-value=26 Score=38.82 Aligned_cols=34 Identities=12% Similarity=0.208 Sum_probs=26.1
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 331 d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
..||+|+|||.||+..|..++.. .|. ++-++|+.
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~----~g~-------~VtlfEk~ 72 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKH----ERV-------KVDIFEKL 72 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHh----cCC-------eEEEEecC
Confidence 57999999999999999976542 243 47777765
No 474
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=50.03 E-value=20 Score=38.71 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=28.6
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCC
Q 012553 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (461)
Q Consensus 329 l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~G 376 (461)
+++++|||+|+|..|+-||..|... .++++++-+.+
T Consensus 202 ~~gk~VvVVG~G~Sg~diA~~L~~~------------a~~V~l~~r~~ 237 (461)
T PLN02172 202 FKNEVVVVIGNFASGADISRDIAKV------------AKEVHIASRAS 237 (461)
T ss_pred cCCCEEEEECCCcCHHHHHHHHHHh------------CCeEEEEEeec
Confidence 6889999999999999999988653 24677766654
No 475
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=49.95 E-value=43 Score=31.08 Aligned_cols=45 Identities=27% Similarity=0.319 Sum_probs=28.9
Q ss_pred HHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 319 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 319 l~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
+.++...+.-..+++|+|.|+|+.|..++++... .| .+++.+++.
T Consensus 123 ~~~l~~~~~~~~~~~vli~g~~~~G~~~~~~a~~-----~g-------~~v~~~~~~ 167 (271)
T cd05188 123 YHALRRAGVLKPGDTVLVLGAGGVGLLAAQLAKA-----AG-------ARVIVTDRS 167 (271)
T ss_pred HHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHH-----cC-------CeEEEEcCC
Confidence 3444445544568899999999877766654432 24 367777664
No 476
>PRK06182 short chain dehydrogenase; Validated
Probab=49.93 E-value=30 Score=33.31 Aligned_cols=74 Identities=19% Similarity=0.285 Sum_probs=39.3
Q ss_pred ccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhh---h-hhccccCCCCCHH
Q 012553 330 AEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK---K-PWAHEHEPVNNLL 404 (461)
Q Consensus 330 ~d~riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k---~-~fA~~~~~~~~L~ 404 (461)
+..+++|.|| |-.|..+|+.+.. .|. ++++++++- +.+.+.. . .+.-+.....++.
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~-----~G~-------~V~~~~r~~-------~~l~~~~~~~~~~~~~Dv~~~~~~~ 62 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAA-----QGY-------TVYGAARRV-------DKMEDLASLGVHPLSLDVTDEASIK 62 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHH-----CCC-------EEEEEeCCH-------HHHHHHHhCCCeEEEeeCCCHHHHH
Confidence 3568999997 5566666666643 252 677776631 1121111 1 1111222223455
Q ss_pred Hhhccc-----CCcEEEeccCCC
Q 012553 405 DAVKVI-----KPTILIGSSGVG 422 (461)
Q Consensus 405 eaV~~v-----kptvLIG~S~~~ 422 (461)
++++.+ ++|++|=.++..
T Consensus 63 ~~~~~~~~~~~~id~li~~ag~~ 85 (273)
T PRK06182 63 AAVDTIIAEEGRIDVLVNNAGYG 85 (273)
T ss_pred HHHHHHHHhcCCCCEEEECCCcC
Confidence 556543 799999777643
No 477
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=49.92 E-value=21 Score=42.69 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=29.4
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 327 ~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
++-...||+|+|||.||+..|..|.. .|. ++.++|..
T Consensus 379 ~~~tgKKVaVVGaGPAGLsAA~~La~-----~Gh-------~Vtv~E~~ 415 (1028)
T PRK06567 379 KEPTNYNILVTGLGPAGFSLSYYLLR-----SGH-------NVTAIDGL 415 (1028)
T ss_pred CCCCCCeEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEccc
Confidence 34577899999999999999999865 264 57778863
No 478
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=49.87 E-value=23 Score=37.06 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=21.1
Q ss_pred cccceEEEeCcchHHHHHHHHHHH
Q 012553 329 LAEHRFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 329 l~d~riv~~GAGsAgiGiA~ll~~ 352 (461)
+++.+++|.|+|..|.++|+.+..
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~ 26 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHK 26 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHH
Confidence 567899999999999999998875
No 479
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=49.69 E-value=1.4e+02 Score=31.37 Aligned_cols=113 Identities=16% Similarity=0.215 Sum_probs=70.0
Q ss_pred HHHHHHHHcCCCceec---cCCCchhHHHHHHHHHHHHHhC-CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhh
Q 012553 289 AFELLAKYGTTHLVFN---DDIQGTASVVLAGVVAALKLIG-GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEE 364 (461)
Q Consensus 289 af~iL~ryr~~~~~Fn---DDiQGTaaV~LAgll~Alk~~g-~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~ee 364 (461)
+.+.+.+| .++||.| |..|=| =+||=++.-.+..| +++++.+|+++|-+.- .+++-++.++.+ .|+
T Consensus 113 ~~~~~a~~-~~vPVINa~~~~~HPt--QaLaDl~Ti~e~~g~~~l~gl~va~vGD~~~--~v~~S~~~~~~~-~G~---- 182 (334)
T PRK12562 113 VVETLAEY-AGVPVWNGLTNEFHPT--QLLADLLTMQEHLPGKAFNEMTLVYAGDARN--NMGNSMLEAAAL-TGL---- 182 (334)
T ss_pred HHHHHHHh-CCCCEEECCCCCCChH--HHHHHHHHHHHHhCCCCcCCcEEEEECCCCC--CHHHHHHHHHHH-cCC----
Confidence 34444444 4799999 333444 35666666666665 4699999999998742 366666666554 464
Q ss_pred ccceEEEEcCCCccccCCcCCCChhhhhhccc-cCC---CCCHHHhhcccCCcEEEecc
Q 012553 365 TRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP---VNNLLDAVKVIKPTILIGSS 419 (461)
Q Consensus 365 A~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~-~~~---~~~L~eaV~~vkptvLIG~S 419 (461)
++.++-.+|+--.. + .-+.-+.+++. ... ..++.||+++ +||+.-.+
T Consensus 183 ---~v~~~~P~~~~~~~--~-~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvvyt~~ 233 (334)
T PRK12562 183 ---DLRLVAPQACWPEA--S-LVAECSALAQKHGGKITLTEDIAAGVKG--ADFIYTDV 233 (334)
T ss_pred ---EEEEECCcccCCcH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEEcC
Confidence 68888888763321 1 11111233332 111 2689999998 99999865
No 480
>PRK13748 putative mercuric reductase; Provisional
Probab=48.99 E-value=19 Score=39.03 Aligned_cols=33 Identities=15% Similarity=0.239 Sum_probs=26.8
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 331 d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
+-.++|+|||+||+..|..+.+. | .++.++|+.
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~-----G-------~~v~lie~~ 130 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQ-----G-------ARVTLIERG 130 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhC-----C-------CeEEEEecC
Confidence 46799999999999999888653 5 478888865
No 481
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=48.96 E-value=14 Score=40.22 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.3
Q ss_pred cceEEEeCcchHHHHHHHHHHHH
Q 012553 331 EHRFLFLGAGEAGTGIAELIALE 353 (461)
Q Consensus 331 d~riv~~GAGsAgiGiA~ll~~~ 353 (461)
-.+++|+|||+||+..|+-|...
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~ 28 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLRE 28 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHC
Confidence 57899999999999999988764
No 482
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=48.84 E-value=21 Score=39.05 Aligned_cols=31 Identities=32% Similarity=0.516 Sum_probs=25.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcC
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs 374 (461)
++|.|+|||..|.|||..++.+ |. .++++|.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~a-----G~-------~V~l~D~ 38 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQA-----GH-------TVLLYDA 38 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEeC
Confidence 5799999999999999998764 64 5777775
No 483
>PRK14852 hypothetical protein; Provisional
Probab=48.80 E-value=16 Score=43.53 Aligned_cols=39 Identities=21% Similarity=0.153 Sum_probs=33.8
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCC
Q 012553 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (461)
Q Consensus 327 ~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~G 376 (461)
++|+..||+|+|+|..|..||+.|+.+ |+ .+|.++|-+=
T Consensus 328 ~kL~~srVlVvGlGGlGs~ia~~LAra-----GV------G~I~L~D~D~ 366 (989)
T PRK14852 328 RRLLRSRVAIAGLGGVGGIHLMTLART-----GI------GNFNLADFDA 366 (989)
T ss_pred HHHhcCcEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCCE
Confidence 578999999999999999999998775 75 6899999863
No 484
>PLN02985 squalene monooxygenase
Probab=48.74 E-value=24 Score=38.52 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=19.4
Q ss_pred ccceEEEeCcchHHHHHHHHHHH
Q 012553 330 AEHRFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 330 ~d~riv~~GAGsAgiGiA~ll~~ 352 (461)
.+..|+|+|||.||...|-.|.+
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~ 64 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAK 64 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHH
Confidence 34589999999999999987754
No 485
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=48.56 E-value=35 Score=35.99 Aligned_cols=99 Identities=24% Similarity=0.323 Sum_probs=55.5
Q ss_pred CCchhHHHHHHH--HHHHHHhCCCcccceEEEeCcchHHHH-HHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCc
Q 012553 307 IQGTASVVLAGV--VAALKLIGGTLAEHRFLFLGAGEAGTG-IAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK 383 (461)
Q Consensus 307 iQGTaaV~LAgl--l~Alk~~g~~l~d~riv~~GAGsAgiG-iA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~ 383 (461)
...-|-+..||+ ++|+|..+.+ ..++++|+|+| |+| +|=|++.+| | -+++.+|+.
T Consensus 142 ~~~aApllCaGiT~y~alk~~~~~-pG~~V~I~G~G--GlGh~avQ~Aka~----g-------a~Via~~~~-------- 199 (339)
T COG1064 142 LAEAAPLLCAGITTYRALKKANVK-PGKWVAVVGAG--GLGHMAVQYAKAM----G-------AEVIAITRS-------- 199 (339)
T ss_pred hhhhhhhhcCeeeEeeehhhcCCC-CCCEEEEECCc--HHHHHHHHHHHHc----C-------CeEEEEeCC--------
Confidence 333444444443 5678774433 47899999999 666 455565554 4 268877762
Q ss_pred CCCChhhhhhcccc-------CCCCCHHHhhcccCCcEEEeccCCCCCCCHHHHHHHh
Q 012553 384 DSLQHFKKPWAHEH-------EPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMA 434 (461)
Q Consensus 384 ~~L~~~k~~fA~~~-------~~~~~L~eaV~~vkptvLIG~S~~~g~Ft~evv~~Ma 434 (461)
+.|+++|++. ....+..++++.. .|+.|=+.+ +-.| +..++.+.
T Consensus 200 ----~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~-~d~ii~tv~-~~~~-~~~l~~l~ 250 (339)
T COG1064 200 ----EEKLELAKKLGADHVINSSDSDALEAVKEI-ADAIIDTVG-PATL-EPSLKALR 250 (339)
T ss_pred ----hHHHHHHHHhCCcEEEEcCCchhhHHhHhh-CcEEEECCC-hhhH-HHHHHHHh
Confidence 2344455431 0123355555543 899887777 4233 33444444
No 486
>PRK13984 putative oxidoreductase; Provisional
Probab=48.55 E-value=22 Score=39.13 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=27.2
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 330 ~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
...+++|+|||.||+..|..+... |. ++.++|+.
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~-----G~-------~v~vie~~ 315 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATM-----GY-------EVTVYESL 315 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEecC
Confidence 467899999999999999998653 54 57777764
No 487
>PRK08219 short chain dehydrogenase; Provisional
Probab=47.98 E-value=66 Score=29.46 Aligned_cols=71 Identities=20% Similarity=0.270 Sum_probs=39.5
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhh-----c-cccCCCCCHH
Q 012553 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW-----A-HEHEPVNNLL 404 (461)
Q Consensus 332 ~riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~f-----A-~~~~~~~~L~ 404 (461)
.+++|.|| |..|..+++.+++. .+++++|++. +.++...+.. - -+-.+..++.
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~~-------------~~V~~~~r~~-------~~~~~~~~~~~~~~~~~~D~~~~~~~~ 63 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAPT-------------HTLLLGGRPA-------ERLDELAAELPGATPFPVDLTDPEAIA 63 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHhh-------------CCEEEEeCCH-------HHHHHHHHHhccceEEecCCCCHHHHH
Confidence 47889887 66777777766431 3577777641 1111111111 0 1111224566
Q ss_pred Hhhccc-CCcEEEeccCCC
Q 012553 405 DAVKVI-KPTILIGSSGVG 422 (461)
Q Consensus 405 eaV~~v-kptvLIG~S~~~ 422 (461)
++++.+ ++|++|-+.+..
T Consensus 64 ~~~~~~~~id~vi~~ag~~ 82 (227)
T PRK08219 64 AAVEQLGRLDVLVHNAGVA 82 (227)
T ss_pred HHHHhcCCCCEEEECCCcC
Confidence 667654 689999887654
No 488
>PLN02697 lycopene epsilon cyclase
Probab=47.88 E-value=20 Score=39.70 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=17.1
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 012553 332 HRFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~ 352 (461)
-.|+|+|||.||+..|..+.+
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak 129 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAK 129 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHh
Confidence 358999999999999877654
No 489
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=47.63 E-value=24 Score=34.94 Aligned_cols=31 Identities=32% Similarity=0.584 Sum_probs=25.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcC
Q 012553 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (461)
Q Consensus 332 ~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs 374 (461)
+||.|+|+|..|.+||..++.. |. +++++|.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~-----g~-------~V~~~d~ 34 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA-----GY-------DVVMVDI 34 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC-----CC-------ceEEEeC
Confidence 5899999999999999988653 53 6788884
No 490
>PTZ00367 squalene epoxidase; Provisional
Probab=47.61 E-value=49 Score=36.91 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=23.1
Q ss_pred HHhCCCc---ccceEEEeCcchHHHHHHHHHHH
Q 012553 323 KLIGGTL---AEHRFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 323 k~~g~~l---~d~riv~~GAGsAgiGiA~ll~~ 352 (461)
++..+|. .+-+|+|+|||.||...|-.|.+
T Consensus 22 ~~~~~~~~~~~~~dViIVGaGiaGlalA~aLar 54 (567)
T PTZ00367 22 RLRFKPARTNYDYDVIIVGGSIAGPVLAKALSK 54 (567)
T ss_pred HHccCccccccCccEEEECCCHHHHHHHHHHHh
Confidence 3445554 45689999999999999988764
No 491
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=47.48 E-value=22 Score=37.80 Aligned_cols=34 Identities=35% Similarity=0.594 Sum_probs=25.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCcc
Q 012553 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (461)
Q Consensus 333 riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi 378 (461)
.++|+|||-+|.-||+.+.+ .| +++.+||++--|
T Consensus 3 d~lIVGaGlsG~V~A~~a~~-----~g-------k~VLIvekR~HI 36 (374)
T COG0562 3 DYLIVGAGLSGAVIAEVAAQ-----LG-------KRVLIVEKRNHI 36 (374)
T ss_pred cEEEECCchhHHHHHHHHHH-----cC-------CEEEEEeccccC
Confidence 58999999999999994432 24 688888876444
No 492
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=47.35 E-value=68 Score=33.56 Aligned_cols=107 Identities=11% Similarity=0.119 Sum_probs=57.9
Q ss_pred HhCCCcccceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhh-----hhhcc-c
Q 012553 324 LIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK-----KPWAH-E 396 (461)
Q Consensus 324 ~~g~~l~d~riv~~GA-GsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k-----~~fA~-~ 396 (461)
..++..++++|+|.|| |-.|..+++.|+.. |. +++.+++..--.... ....... ..+.. +
T Consensus 53 ~~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~-----G~-------~V~~l~R~~~~~~~~-~~~~~~~~~~~~v~~v~~D 119 (390)
T PLN02657 53 FRSKEPKDVTVLVVGATGYIGKFVVRELVRR-----GY-------NVVAVAREKSGIRGK-NGKEDTKKELPGAEVVFGD 119 (390)
T ss_pred ccccCCCCCEEEEECCCcHHHHHHHHHHHHC-----CC-------EEEEEEechhhcccc-chhhHHhhhcCCceEEEee
Confidence 3456778899999998 88899999888652 52 577777643100000 0000000 01111 2
Q ss_pred cCCCCCHHHhhccc--CCcEEEeccCCC-C----CC------CHHHHHHHhcCCCCcEEE
Q 012553 397 HEPVNNLLDAVKVI--KPTILIGSSGVG-R----TF------TKEVIEAMASFNEVVFQA 443 (461)
Q Consensus 397 ~~~~~~L~eaV~~v--kptvLIG~S~~~-g----~F------t~evv~~Ma~~~erPIIF 443 (461)
.....++..+++.. ++|++|=+.+.. + .+ +..+++++.+..-+-+|+
T Consensus 120 l~d~~~l~~~~~~~~~~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~ 179 (390)
T PLN02657 120 VTDADSLRKVLFSEGDPVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVL 179 (390)
T ss_pred CCCHHHHHHHHHHhCCCCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEE
Confidence 22234577777765 589998544321 1 11 345667766554445655
No 493
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=47.18 E-value=17 Score=43.38 Aligned_cols=39 Identities=28% Similarity=0.414 Sum_probs=34.2
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCC
Q 012553 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (461)
Q Consensus 327 ~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~G 376 (461)
++|.+.+|+|+|+|.-|.-||+.|+.+ |+ ++|.++|.+-
T Consensus 20 ~kL~~s~VLIiG~gGLG~EiaKnL~la-----GV------g~iti~D~d~ 58 (1008)
T TIGR01408 20 QKMAKSNVLISGMGGLGLEIAKNLVLA-----GV------KSVTLHDTEK 58 (1008)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCe
Confidence 568899999999999999999999876 64 7999999874
No 494
>PRK08655 prephenate dehydrogenase; Provisional
Probab=47.04 E-value=66 Score=34.59 Aligned_cols=31 Identities=13% Similarity=0.308 Sum_probs=24.1
Q ss_pred eEEEeC-cchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCC
Q 012553 333 RFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (461)
Q Consensus 333 riv~~G-AGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~ 375 (461)
||.|+| .|..|..+|..+... |. +++++|++
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~-----G~-------~V~v~~r~ 33 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEK-----GF-------EVIVTGRD 33 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHC-----CC-------EEEEEECC
Confidence 789998 699999999988652 42 67777764
No 495
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=46.64 E-value=46 Score=35.50 Aligned_cols=87 Identities=11% Similarity=0.058 Sum_probs=47.3
Q ss_pred HHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhh-----
Q 012553 318 VVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP----- 392 (461)
Q Consensus 318 ll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~----- 392 (461)
+..++.-....|+..|++++|.++-.-.++.++ ++.|+. +..+-. -.... +.....++.
T Consensus 287 ~~~~l~~~~~~L~Gkrv~i~~g~~~~~~~~~~l-----~elGme-------vv~~g~---~~~~~-~~~~~~~~~~~~~~ 350 (421)
T cd01976 287 MEAVIAKYRPRLEGKTVMLYVGGLRPRHYIGAY-----EDLGME-------VVGTGY---EFAHR-DDYERTEVIPKEGT 350 (421)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHH-----HHCCCE-------EEEEEe---ecCCH-HHHhhHHhhcCCce
Confidence 455666667889999999998776555665533 345873 221100 00000 001111100
Q ss_pred hccccCCCCCHHHhhcccCCcEEEeccC
Q 012553 393 WAHEHEPVNNLLDAVKVIKPTILIGSSG 420 (461)
Q Consensus 393 fA~~~~~~~~L~eaV~~vkptvLIG~S~ 420 (461)
..-+..+...+++.++..+||++||-|.
T Consensus 351 ~i~~~~d~~e~~~~i~~~~pDliig~~~ 378 (421)
T cd01976 351 LLYDDVTHYELEEFVKRLKPDLIGSGIK 378 (421)
T ss_pred EEEcCCCHHHHHHHHHHhCCCEEEecCc
Confidence 0011122346888999999999999775
No 496
>PRK07208 hypothetical protein; Provisional
Probab=46.49 E-value=24 Score=37.26 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.4
Q ss_pred cceEEEeCcchHHHHHHHHHHH
Q 012553 331 EHRFLFLGAGEAGTGIAELIAL 352 (461)
Q Consensus 331 d~riv~~GAGsAgiGiA~ll~~ 352 (461)
..+|+|+|||-||+..|..|.+
T Consensus 4 ~~~vvIiGaGisGL~aA~~L~~ 25 (479)
T PRK07208 4 KKSVVIIGAGPAGLTAAYELLK 25 (479)
T ss_pred CCcEEEECcCHHHHHHHHHHHH
Confidence 4579999999999999988865
No 497
>PRK07121 hypothetical protein; Validated
Probab=46.43 E-value=25 Score=37.64 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=26.9
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCc
Q 012553 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (461)
Q Consensus 331 d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GL 377 (461)
+-.|||+|+|.||+..|-.+.+ .| .++.++++...
T Consensus 20 ~~DVvVVGaG~AGl~AA~~aae-----~G-------~~VillEK~~~ 54 (492)
T PRK07121 20 EADVVVVGFGAAGACAAIEAAA-----AG-------ARVLVLERAAG 54 (492)
T ss_pred ccCEEEECcCHHHHHHHHHHHH-----CC-------CeEEEEeCCCC
Confidence 5679999999999999876654 25 37888887654
No 498
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=46.41 E-value=1.8e+02 Score=30.46 Aligned_cols=112 Identities=22% Similarity=0.310 Sum_probs=67.1
Q ss_pred HHHHHHHHcCCCceec---cCCCchhHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhc
Q 012553 289 AFELLAKYGTTHLVFN---DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEET 365 (461)
Q Consensus 289 af~iL~ryr~~~~~Fn---DDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA 365 (461)
+.+.+.+| .++||.| |+.|=|= +||=++.-.+.. .++++.||+++|.+.- ++++-++.++.+ .|+
T Consensus 114 ~~~~~a~~-~~vPVINa~~~~~HPtQ--aLaDl~Ti~e~~-g~l~g~~va~vGd~~~--~v~~Sl~~~~~~-~g~----- 181 (331)
T PRK02102 114 IVEELAKY-SGVPVWNGLTDEWHPTQ--MLADFMTMKEHF-GPLKGLKLAYVGDGRN--NMANSLMVGGAK-LGM----- 181 (331)
T ss_pred HHHHHHHh-CCCCEEECCCCCCChHH--HHHHHHHHHHHh-CCCCCCEEEEECCCcc--cHHHHHHHHHHH-cCC-----
Confidence 33344444 4689988 3344443 455555444444 4699999999999843 477777776654 464
Q ss_pred cceEEEEcCCCccccCCcCCCChhhhhhccc-cCC---CCCHHHhhcccCCcEEEecc
Q 012553 366 RKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP---VNNLLDAVKVIKPTILIGSS 419 (461)
Q Consensus 366 ~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~-~~~---~~~L~eaV~~vkptvLIG~S 419 (461)
++.++-.+|+.-.. + .-+.-+.+++. ... ..++.+|+++ +||+.-.+
T Consensus 182 --~v~~~~P~~~~~~~--~-~~~~~~~~~~~~g~~~~~~~d~~ea~~~--aDvvyt~~ 232 (331)
T PRK02102 182 --DVRICAPKELWPEE--E-LVALAREIAKETGAKITITEDPEEAVKG--ADVIYTDV 232 (331)
T ss_pred --EEEEECCcccccCH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEEcC
Confidence 68888887763321 1 11111223322 111 2689999998 99998753
No 499
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=46.38 E-value=27 Score=37.17 Aligned_cols=34 Identities=29% Similarity=0.474 Sum_probs=26.1
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCC
Q 012553 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (461)
Q Consensus 331 d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~G 376 (461)
+++++|+|||-+|+..|-.|..+ |. ++.+++++.
T Consensus 1 ~~dvvIIGaG~~GL~aa~~La~~-----G~-------~v~vlE~~~ 34 (492)
T TIGR02733 1 ETSVVVIGAGIAGLTAAALLAKR-----GY-------RVTLLEQHA 34 (492)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEecCC
Confidence 46899999999999999888653 53 466666653
No 500
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=46.31 E-value=28 Score=38.26 Aligned_cols=80 Identities=10% Similarity=0.249 Sum_probs=47.7
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhccceEEEEcCCCccccCCcCCCChhhhhhccc---cCCCCC
Q 012553 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNN 402 (461)
Q Consensus 326 g~~l~d~riv~~GAGsAgiGiA~ll~~~m~~~~Gls~eeA~~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~---~~~~~~ 402 (461)
...|...|++|+|-++-++|+++.+... .|+. +..++.. .....+.+.+.-+.+... .++...
T Consensus 300 ~~~l~Gkrv~I~gd~~~a~~l~~~L~~E----LGm~-------vv~~g~~---~~~~~~~~~~~~~~~~~~~~i~~D~~e 365 (513)
T CHL00076 300 CQNLTGKKAVVFGDATHAASMTKILARE----MGIR-------VSCAGTY---CKHDAEWFKEQVQGFCDEILITDDHTE 365 (513)
T ss_pred ccccCCCEEEEEcCchHHHHHHHHHHHh----CCCE-------EEEecCc---ccchhHHHHHHHHHhccCcEEecCHHH
Confidence 3678899999999999999999988765 3873 2333321 000000011111111110 112235
Q ss_pred HHHhhcccCCcEEEecc
Q 012553 403 LLDAVKVIKPTILIGSS 419 (461)
Q Consensus 403 L~eaV~~vkptvLIG~S 419 (461)
+.+.|+..+||++||.|
T Consensus 366 i~~~I~~~~pdliiGs~ 382 (513)
T CHL00076 366 VGDMIARVEPSAIFGTQ 382 (513)
T ss_pred HHHHHHhcCCCEEEECc
Confidence 78888999999999976
Done!