BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012554
(461 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3Q90|A Chain A, Crystal Structure Of The Ntf2 Domain Of Ras
Gtpase-Activating Protein- Binding Protein 1
pdb|3Q90|B Chain B, Crystal Structure Of The Ntf2 Domain Of Ras
Gtpase-Activating Protein- Binding Protein 1
Length = 140
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 75/135 (55%), Gaps = 6/135 (4%)
Query: 7 QAPTADIVANAFVHQYYLILHQSPQLVHRFYQDISKL--GRPEENGAMSITTTMQA-IND 63
+ P+ +V FV QYY +L+Q+P ++HRFY S G + NG + Q I+
Sbjct: 5 EKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHR 64
Query: 64 KILALHYGEFSAEITTVDAQESYNGGVIVLVTGYLTGKDSVRRKFSQSFFLAPQD---KG 120
K+++ ++ +I VDA + N GV+V V G L+ + R+F Q+F LAP+
Sbjct: 65 KVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANK 124
Query: 121 YFVLNDVFRYVDDAY 135
++V ND+FRY D+ +
Sbjct: 125 FYVHNDIFRYQDEVF 139
>pdb|3UJM|A Chain A, Crystal Structure Of The Ntf2-Like Domain Of The
Drosophila Melanogaster Rasputin Protein
pdb|3UJM|B Chain B, Crystal Structure Of The Ntf2-Like Domain Of The
Drosophila Melanogaster Rasputin Protein
Length = 120
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 69/118 (58%), Gaps = 5/118 (4%)
Query: 14 VANAFVHQYYLILHQSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALHYGEF 73
V FV QYY +L+++P +HRFY S +G + + I+++I L++ +
Sbjct: 6 VGREFVRQYYTLLNKAPNHLHRFYNHNSSY----IHGESKLVVGQREIHNRIQQLNFNDC 61
Query: 74 SAEITTVDAQESYNGGVIVLVTGYLTGKDSVRRKFSQSFFLAPQD-KGYFVLNDVFRY 130
A+I+ VDAQ + GV+V VTG L+ R+F+Q+F LA Q K Y+V ND+FRY
Sbjct: 62 HAKISQVDAQATLGNGVVVQVTGELSNDGQPMRRFTQTFVLAAQSPKKYYVHNDIFRY 119
>pdb|1GY7|A Chain A, N77y Point Mutant Of S.Cerevisiae Ntf2
pdb|1GY7|B Chain B, N77y Point Mutant Of S.Cerevisiae Ntf2
pdb|1GY7|C Chain C, N77y Point Mutant Of S.Cerevisiae Ntf2
pdb|1GY7|D Chain D, N77y Point Mutant Of S.Cerevisiae Ntf2
pdb|1GYB|A Chain A, N77y Point Mutant Of Yntf2 Bound To Fxfg Nucleoporin
Repeat
pdb|1GYB|B Chain B, N77y Point Mutant Of Yntf2 Bound To Fxfg Nucleoporin
Repeat
pdb|1GYB|C Chain C, N77y Point Mutant Of Yntf2 Bound To Fxfg Nucleoporin
Repeat
pdb|1GYB|D Chain D, N77y Point Mutant Of Yntf2 Bound To Fxfg Nucleoporin
Repeat
Length = 125
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 7/103 (6%)
Query: 34 HRFYQDISKLGRPEENGAMSITTTMQA-----INDKILALHYGEFSAEITTVDAQ-ESYN 87
++F D S+LG N +M T Q I +K+++L + + ITT+DAQ S
Sbjct: 18 NQFDTDRSQLGNLYRNESMLTFETSQLQGAKDIVEKLVSLPFQKVQHRITTLDAQPASPY 77
Query: 88 GGVIVLVTG-YLTGKDSVRRKFSQSFFLAPQDKGYFVLNDVFR 129
G V+V++TG L ++ ++FSQ F L P Y+V ND+FR
Sbjct: 78 GDVLVMITGDLLIDEEQNPQRFSQVFHLIPDGNSYYVFNDIFR 120
>pdb|1ZO2|A Chain A, Structure Of Nuclear Transport Factor 2 (Ntf2) From
Cryptosporidium Parvum
pdb|1ZO2|B Chain B, Structure Of Nuclear Transport Factor 2 (Ntf2) From
Cryptosporidium Parvum
Length = 129
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 42/133 (31%), Positives = 57/133 (42%), Gaps = 12/133 (9%)
Query: 1 MATPLHQAPTADIVANAFVHQYYLILHQSPQLVHRFYQDISKLGRPEENGAMSITTTMQA 60
M ++ P D + FV YY + + Y S L + T Q
Sbjct: 1 MDQSINLNPQFDQIGKQFVQHYYQTFQTNRPALGGLYGPQSMLTWED--------TQFQG 52
Query: 61 ---INDKILALHYGEFSAEITTVDAQESYNGGVIVLVTGYLTGKDSVRRKFSQSFFLAPQ 117
I +K +L++ EIT VD Q S N G IV VTG + D KFSQ F L P
Sbjct: 53 QANIVNKFNSLNFQRVQFEITRVDCQPSPNNGSIVFVTGDVRIDDGQPLKFSQVFNLMPS 112
Query: 118 -DKGYFVLNDVFR 129
+ G+ + ND+FR
Sbjct: 113 GNGGFMIFNDLFR 125
>pdb|3NV0|B Chain B, Crystal Structure And Mutational Analysis Of The Nxf2NXT1
Heterodimeric Complex From Caenorhabditis Elegans At
1.84 A Resolution
Length = 154
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 20/125 (16%)
Query: 18 FVHQYYLILHQSPQLVHRFYQDISKL---GRPEENGAMSITTTMQAINDKILALHYGEFS 74
F+ YY ++ + + + Y +S G P NG SI M+A+
Sbjct: 40 FMDVYYDVMDRKREKIGFLYTQVSNAVWNGNPI-NGYDSICEFMKALPST---------Q 89
Query: 75 AEITTVDAQE-------SYNGGVIVLVTGYLTGKDSVRRKFSQSFFLAPQDKGYFVLNDV 127
+I ++DAQ +GG+++ V G +T +R F+Q+ L +D Y V +D
Sbjct: 90 HDIQSLDAQRLPEGVTGDMSGGMLLNVAGAVTVDGDSKRAFTQTLLLGVEDGKYKVKSDR 149
Query: 128 FRYVD 132
FRYVD
Sbjct: 150 FRYVD 154
>pdb|1ASK|A Chain A, Nuclear Transport Factor 2 (Ntf2) H66a Mutant
pdb|1ASK|B Chain B, Nuclear Transport Factor 2 (Ntf2) H66a Mutant
Length = 127
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 11/124 (8%)
Query: 9 PTADIVANAFVHQYYLILHQSPQLVHRFYQDISKL---GRPEENGAMSITTTMQAINDKI 65
P + + ++F+ YY + + Y D S L G+ + A AI +K+
Sbjct: 5 PIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKA--------AIVEKL 56
Query: 66 LALHYGEFSAEITTVDAQESYNGGVIVLVTGYLTGKDSVRRKFSQSFFLAPQDKGYFVLN 125
+L + + A IT D Q + + +I +V G L + F Q F L + + N
Sbjct: 57 SSLPFQKIQASITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTN 116
Query: 126 DVFR 129
D+FR
Sbjct: 117 DMFR 120
>pdb|1QMA|A Chain A, Nuclear Transport Factor 2 (Ntf2) W7a Mutant
pdb|1QMA|B Chain B, Nuclear Transport Factor 2 (Ntf2) W7a Mutant
pdb|1QMA|C Chain C, Nuclear Transport Factor 2 (Ntf2) W7a Mutant
pdb|1QMA|D Chain D, Nuclear Transport Factor 2 (Ntf2) W7a Mutant
Length = 126
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 11/124 (8%)
Query: 9 PTADIVANAFVHQYYLILHQSPQLVHRFYQDISKL---GRPEENGAMSITTTMQAINDKI 65
P A+ + ++F+ YY + + Y D S L G+ + A AI +K+
Sbjct: 4 PIAEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKA--------AIVEKL 55
Query: 66 LALHYGEFSAEITTVDAQESYNGGVIVLVTGYLTGKDSVRRKFSQSFFLAPQDKGYFVLN 125
+L + + IT D Q + + +I +V G L + F Q F L + + N
Sbjct: 56 SSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTN 115
Query: 126 DVFR 129
D+FR
Sbjct: 116 DMFR 119
>pdb|1GY5|A Chain A, D92n,D94n Double Point Mutant Of Human Nuclear Transport
Factor 2 (Ntf2)
pdb|1GY5|B Chain B, D92n,D94n Double Point Mutant Of Human Nuclear Transport
Factor 2 (Ntf2)
Length = 127
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 11/124 (8%)
Query: 9 PTADIVANAFVHQYYLILHQSPQLVHRFYQDISKL---GRPEENGAMSITTTMQAINDKI 65
P + + ++F+ YY + + Y D S L G+ + A AI +K+
Sbjct: 5 PIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKA--------AIVEKL 56
Query: 66 LALHYGEFSAEITTVDAQESYNGGVIVLVTGYLTGKDSVRRKFSQSFFLAPQDKGYFVLN 125
+L + + IT D Q + + +I +V G L ++ F Q F L + + N
Sbjct: 57 SSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKANENPIMGFHQMFLLKNINDAWVCTN 116
Query: 126 DVFR 129
D+FR
Sbjct: 117 DMFR 120
>pdb|1JB4|A Chain A, Crystal Structure Of Ntf2 M102e Mutant
pdb|1JB4|B Chain B, Crystal Structure Of Ntf2 M102e Mutant
Length = 127
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 11/124 (8%)
Query: 9 PTADIVANAFVHQYYLILHQSPQLVHRFYQDISKL---GRPEENGAMSITTTMQAINDKI 65
P + + ++F++ YY + + Y D S L G+ + A AI +K+
Sbjct: 5 PIWEQIGSSFINHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKA--------AIVEKL 56
Query: 66 LALHYGEFSAEITTVDAQESYNGGVIVLVTGYLTGKDSVRRKFSQSFFLAPQDKGYFVLN 125
+L + + IT D Q + + +I +V G L + F Q F L + + N
Sbjct: 57 SSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQEFLLKNINDAWVCTN 116
Query: 126 DVFR 129
D+FR
Sbjct: 117 DMFR 120
>pdb|1AR0|A Chain A, Nuclear Transport Factor 2 (Ntf2) E42k Mutant
pdb|1AR0|B Chain B, Nuclear Transport Factor 2 (Ntf2) E42k Mutant
Length = 127
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 11/124 (8%)
Query: 9 PTADIVANAFVHQYYLILHQSPQLVHRFYQDISKL---GRPEENGAMSITTTMQAINDKI 65
P + + ++F+ YY + + Y D S L G+ + A AI +K+
Sbjct: 5 PIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWKGQQFQGKA--------AIVEKL 56
Query: 66 LALHYGEFSAEITTVDAQESYNGGVIVLVTGYLTGKDSVRRKFSQSFFLAPQDKGYFVLN 125
+L + + IT D Q + + +I +V G L + F Q F L + + N
Sbjct: 57 SSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTN 116
Query: 126 DVFR 129
D+FR
Sbjct: 117 DMFR 120
>pdb|1OUN|A Chain A, Crystal Structure Of Nuclear Transport Factor 2 (Ntf2)
pdb|1OUN|B Chain B, Crystal Structure Of Nuclear Transport Factor 2 (Ntf2)
pdb|1A2K|A Chain A, Gdpran-Ntf2 Complex
pdb|1A2K|B Chain B, Gdpran-Ntf2 Complex
pdb|1GY6|A Chain A, Ntf2 From Rat, Ammonium Sulphate Conditions
pdb|1GY6|B Chain B, Ntf2 From Rat, Ammonium Sulphate Conditions
Length = 127
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 11/124 (8%)
Query: 9 PTADIVANAFVHQYYLILHQSPQLVHRFYQDISKL---GRPEENGAMSITTTMQAINDKI 65
P + + ++F+ YY + + Y D S L G+ + A AI +K+
Sbjct: 5 PIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKA--------AIVEKL 56
Query: 66 LALHYGEFSAEITTVDAQESYNGGVIVLVTGYLTGKDSVRRKFSQSFFLAPQDKGYFVLN 125
+L + + IT D Q + + +I +V G L + F Q F L + + N
Sbjct: 57 SSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTN 116
Query: 126 DVFR 129
D+FR
Sbjct: 117 DMFR 120
>pdb|1U5O|A Chain A, Structure Of The D23a Mutant Of The Nuclear Transport
Carrier Ntf2
pdb|1U5O|B Chain B, Structure Of The D23a Mutant Of The Nuclear Transport
Carrier Ntf2
Length = 127
Score = 38.5 bits (88), Expect = 0.008, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 11/124 (8%)
Query: 9 PTADIVANAFVHQYYLILHQSPQLVHRFYQDISKL---GRPEENGAMSITTTMQAINDKI 65
P + + ++F+ YY + + Y D S L G+ + A AI +K+
Sbjct: 5 PIWEQIGSSFIQHYYQLFANDRTQLGAIYIDASCLTWEGQQFQGKA--------AIVEKL 56
Query: 66 LALHYGEFSAEITTVDAQESYNGGVIVLVTGYLTGKDSVRRKFSQSFFLAPQDKGYFVLN 125
+L + + IT D Q + + +I +V G L + F Q F L + + N
Sbjct: 57 SSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTN 116
Query: 126 DVFR 129
D+FR
Sbjct: 117 DMFR 120
>pdb|1JB2|A Chain A, Crystal Structure Of Ntf2 M84e Mutant
pdb|1JB2|B Chain B, Crystal Structure Of Ntf2 M84e Mutant
Length = 127
Score = 36.6 bits (83), Expect = 0.030, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 11/124 (8%)
Query: 9 PTADIVANAFVHQYYLILHQSPQLVHRFYQDISKL---GRPEENGAMSITTTMQAINDKI 65
P + + ++F++ YY + + Y D S L G+ + A AI +K+
Sbjct: 5 PIWEQIGSSFINHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKA--------AIVEKL 56
Query: 66 LALHYGEFSAEITTVDAQESYNGGVIVLVTGYLTGKDSVRRKFSQSFFLAPQDKGYFVLN 125
+L + + IT D Q + + +I V G L + F Q F L + + N
Sbjct: 57 SSLPFQKIQHSITAQDHQPTPDSCIISEVVGQLKADEDPIMGFHQMFLLKNINDAWVCTN 116
Query: 126 DVFR 129
D+FR
Sbjct: 117 DMFR 120
>pdb|1JKG|A Chain A, Structural Basis For The Recognition Of A Nucleoporin Fg-
Repeat By The Ntf2-Like Domain Of Tap-P15 Mrna Nuclear
Export Factor
pdb|1JN5|A Chain A, Structural Basis For The Recognition Of A Nucleoporin Fg-
Repeat By The Ntf2-Like Domain Of Tap-P15 Mrna Export
Factor
Length = 140
Score = 35.0 bits (79), Expect = 0.085, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 63/128 (49%), Gaps = 17/128 (13%)
Query: 15 ANAFVHQYYLILHQSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALHYGEFS 74
A FV+ YY + + +L+ R Y + L NG + + +++++ L EF
Sbjct: 17 AEEFVNVYYTTMDKRRRLLSRLYMGTATL---VWNG--NAVSGQESLSEFFEMLPSSEF- 70
Query: 75 AEITTVDAQESYNGG------VIVLVTGYLTGKDSVRRKFSQSFFL----APQDKGYFVL 124
+I+ VD Q ++ V+V++ G + + + +R F+Q+F L +P + + +
Sbjct: 71 -QISVVDCQPVHDEATPSQTTVLVVICGSVKFEGNKQRDFNQNFILTAQASPSNTVWKIA 129
Query: 125 NDVFRYVD 132
+D FR+ D
Sbjct: 130 SDCFRFQD 137
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 17/87 (19%)
Query: 66 LALHYGEFSA--EITTVDAQESYNGGVIVLVTGYLTGKDSVRRKFSQSFFLAPQDKGYFV 123
LA +G F + E+++V+ +Y+ T Y D+++R +S + D+GY V
Sbjct: 167 LASFFGIFDSHLEVSSVNTSSNYD-------TAYALLSDALQRLYSAT------DEGYLV 213
Query: 124 LNDVFRYVDDAYHVGSQATTNDVEAPI 150
ND+ D YH S + N V+ P+
Sbjct: 214 ANDLLTKSTDMYH--SLLSANTVDDPL 238
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 17/87 (19%)
Query: 66 LALHYGEFSA--EITTVDAQESYNGGVIVLVTGYLTGKDSVRRKFSQSFFLAPQDKGYFV 123
LA +G F + E+++V+ +Y+ T Y D+++R +S + D+GY V
Sbjct: 163 LASFFGIFDSHLEVSSVNTSSNYD-------TAYALLSDALQRLYSAT------DEGYLV 209
Query: 124 LNDVFRYVDDAYHVGSQATTNDVEAPI 150
ND+ D YH S + N V+ P+
Sbjct: 210 ANDLLTKSTDMYH--SLLSANTVDDPL 234
>pdb|2QIY|A Chain A, Yeast Deubiquitinase Ubp3 And Bre5 Cofactor Complex
pdb|2QIY|B Chain B, Yeast Deubiquitinase Ubp3 And Bre5 Cofactor Complex
Length = 154
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Query: 76 EITTVDAQESYNG----GVIVLVTGYLTGKDSVRRKFSQSFFLAPQDKG--YFVLNDVFR 129
++ T+D Q Y G ++++ TG + + KF Q+F L P G + + ND+ R
Sbjct: 88 KLDTIDFQ--YTGHLHKSILIMATGEMFWTGTPVYKFCQTFILLPSSNGSTFDITNDIIR 145
Query: 130 YVDDAYHV 137
++ +++ +
Sbjct: 146 FISNSFKL 153
>pdb|1ZX2|A Chain A, Crystal Structure Of Yeast Ubp3-Associated Protein Bre5
pdb|1ZX2|B Chain B, Crystal Structure Of Yeast Ubp3-Associated Protein Bre5
Length = 147
Score = 32.3 bits (72), Expect = 0.53, Method: Composition-based stats.
Identities = 29/144 (20%), Positives = 59/144 (40%), Gaps = 20/144 (13%)
Query: 10 TADIVANAFVHQYYLILHQSPQLVHRFYQDISKLGR-----PEENGAMSITTTMQAINDK 64
T + AF+ YY + P + FY ++L N + T++ +
Sbjct: 5 TVQDICFAFLQNYYERMRTDPSKLAYFYASTAELTHTNYQSKSTNEKDDVLPTVKVTGRE 64
Query: 65 ILALHYGEFSAEI-------TTVDAQESYNG----GVIVLVTGYLTGKDSVRRKFSQSFF 113
+ + A++ T+D Q Y G ++++ TG + + KF Q+F
Sbjct: 65 NINKFFSRNDAKVRSLKLKLDTIDFQ--YTGHLHKSILIMATGEMFWTGTPVYKFCQTFI 122
Query: 114 LAPQDKG--YFVLNDVFRYVDDAY 135
L P G + + ND+ R++ +++
Sbjct: 123 LLPSSNGSTFDITNDIIRFISNSF 146
>pdb|3RDK|A Chain A, Protein Crystal Structure Of Xylanase A1 Of Paenibacillus
Sp. Jdr-2
pdb|3RDK|B Chain B, Protein Crystal Structure Of Xylanase A1 Of Paenibacillus
Sp. Jdr-2
pdb|4E4P|A Chain A, Second Native Structure Of Xylanase A1 From Paenibacillus
Sp. Jdr-2
pdb|4E4P|B Chain B, Second Native Structure Of Xylanase A1 From Paenibacillus
Sp. Jdr-2
pdb|3RO8|A Chain A, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|B Chain B, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|C Chain C, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|D Chain D, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|E Chain E, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|F Chain F, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|G Chain G, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|H Chain H, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
Length = 341
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 3 TPLHQAPTADIVANAFVHQYYLILHQSPQL-VHRFYQDISKLGRPEENGAMSITTTMQAI 61
TP +QA +D V AF+ +L ++P + +Y D ++ +N A +I ++ I
Sbjct: 157 TPWYQAIGSDYVEQAFLAARE-VLDENPSWNIKLYYNDYNE---DNQNKATAIYNMVKDI 212
Query: 62 NDKILALHYGEFSAEITTVDAQESYN 87
ND+ A H G+ I V Q YN
Sbjct: 213 NDRYAAAHNGKLL--IDGVGMQGHYN 236
>pdb|3D30|A Chain A, Structure Of An Expansin Like Protein From Bacillus
Subtilis At 1.9a Resolution
pdb|4FER|A Chain A, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
Complex With Cellohexaose
pdb|4FER|B Chain B, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
Complex With Cellohexaose
pdb|4FFT|A Chain A, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
Complex With Mixed-Linkage Glucan
pdb|4FFT|B Chain B, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
Complex With Mixed-Linkage Glucan
pdb|4FG2|A Chain A, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
Complex With Cellotetraose
pdb|4FG2|B Chain B, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
Complex With Cellotetraose
pdb|4FG4|A Chain A, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
Complex With Hemithiocellodextrin
pdb|4FG4|B Chain B, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
Complex With Hemithiocellodextrin
Length = 208
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 283 GNNQEAEGP----SIYLKGLPPSATHALLE---NEFRKFGTIRAGGIQVKTQ 327
G+ E EGP ++Y+ L P L+ N FRK G ++ G I +K +
Sbjct: 53 GSYLEVEGPKGKTTVYVTDLYPEGARGALDLSPNAFRKIGNMKDGKINIKWR 104
>pdb|2BH0|A Chain A, Crystal Structure Of A Semet Derivative Of Expa From
Bacillus Subtilis At 2.5 Angstrom
Length = 208
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 283 GNNQEAEGP----SIYLKGLPPSATHALLE---NEFRKFGTIRAGGIQVKTQ 327
G+ E EGP ++Y+ L P L+ N FRK G + G I +K +
Sbjct: 53 GSYLEVEGPKGKTTVYVTDLYPEGARGALDLSPNAFRKIGNXKDGKINIKWR 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.128 0.352
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,194,011
Number of Sequences: 62578
Number of extensions: 344620
Number of successful extensions: 572
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 554
Number of HSP's gapped (non-prelim): 22
length of query: 461
length of database: 14,973,337
effective HSP length: 102
effective length of query: 359
effective length of database: 8,590,381
effective search space: 3083946779
effective search space used: 3083946779
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (25.0 bits)