BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012554
(461 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O94260|G3BP_SCHPO Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=nxt3 PE=1 SV=1
Length = 434
Score = 125 bits (314), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 112/441 (25%), Positives = 204/441 (46%), Gaps = 52/441 (11%)
Query: 2 ATPLHQAPTADIVANAFVHQYYLILHQSPQLVHRFYQDISKLGRPEENGAMSITTTMQAI 61
AT L D + FV +YY L++ P +H FY S L +E ++S+ Q I
Sbjct: 6 ATLLEPVLGKDEIGWMFVQEYYTYLNKEPNRLHCFYTKKSTLIHGDEGESISLCHGQQEI 65
Query: 62 NDKILALHYGEFSAEITTVDAQESYNGGVIVLVTGYLTGKDSVRRKFSQSFFLAPQDKGY 121
++KIL L + I+ VD+ S NGG+++ V G ++ K + RKF+Q+FFLA Q GY
Sbjct: 66 HNKILDLDFQNCKVLISNVDSLASSNGGIVIQVLGEMSNKGKLSRKFAQTFFLAEQPNGY 125
Query: 122 FVLNDVFRYV---------------DDAYHVGSQATTNDVEAPITPDQDHSPV--QENHV 164
FVLND+FR++ + V S+ N V++ Q+H P +E H
Sbjct: 126 FVLNDIFRFLREDVEEEEESPDAVEKEKKDVASEPYVNGVQS-----QEHLPSAKEEGHY 180
Query: 165 SDQTAISSEEVSGEEVDNPSEN-GDGTIEEEEAPVPEVVDA-IPDDTHVAAESDSKVEEV 222
D A + + + N +++ T+ E PV +V +A +P ++ ++++++
Sbjct: 181 QDPAATENNFATAALISNETDSLNQATLAVPEEPVIQVTEASVPS---FVSQQENQLQDE 237
Query: 223 PKKSYASIVKVMKDSALPVSSPPPASLRSIMK----IQEQPPASATSPAPASEKQVTNSN 278
S + + S V++ P + I + ++ Q S+T+ + N++
Sbjct: 238 ALTSNSKNADAIGASDANVATAPKSWADLIARNHPDVKSQASVSSTASTTGQTVKGVNAD 297
Query: 279 ATEN-----GNNQEAEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFG 333
T+ + E S+++K +PP + L++ FG ++A I+ +KG
Sbjct: 298 QTQQPTAPYTQSNELLETSVFVKNIPPETSDVSLKSAMSIFGPVKA--IEFARRKG--TA 353
Query: 334 FVEFEEENAVQSAIEASPIVISGHRVVVEPKKSTRGGNRGRFSSRAGNGYRNEGTRGRGN 393
+V+F VQ A+ + I+ + +E ++ G+F +++G+ N+ N
Sbjct: 354 YVDFVNHECVQLALNKKTLQINNATLNIEERRRLFS---GKF-NKSGDKKSND------N 403
Query: 394 YGGGRGYGRGDFGNRSEFENR 414
Y G + R GNR F+ R
Sbjct: 404 YNGMKRNFRK--GNRGAFDGR 422
>sp|Q5RB87|G3BP1_PONAB Ras GTPase-activating protein-binding protein 1 OS=Pongo abelii
GN=G3BP1 PE=2 SV=1
Length = 466
Score = 92.4 bits (228), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 101/428 (23%), Positives = 181/428 (42%), Gaps = 66/428 (15%)
Query: 5 LHQAPTADIVANAFVHQYYLILHQSPQLVHRFYQDISKL--GRPEENGAMSITTTMQA-I 61
+ + P+ +V FV QYY +L+Q+P ++HRFY S G + NG + Q I
Sbjct: 2 VMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEI 61
Query: 62 NDKILALHYGEFSAEITTVDAQESYNGGVIVLVTGYLTGKDSVRRKFSQSFFLAPQ---D 118
+ K+++ ++ +I VDA + N GV+V V G L+ + R+F Q+F LAP+
Sbjct: 62 HRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVA 121
Query: 119 KGYFVLNDVFRYVDDAY-----------HVGSQATTNDVEAP-ITPDQD----HSPVQEN 162
++V ND+FRY D+ + + + P + PD V N
Sbjct: 122 NKFYVHNDIFRYQDEVFGGFVTEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQAVVSN 181
Query: 163 HVSDQTAISSEEVSGEEVDNPSENGDGTIEEEEAPVPEVVDAIPDDTHVAAE------SD 216
+ + E + P + I+EE+ P P + + +P+D ++ +
Sbjct: 182 DMEEHLEEPVAEPEPDPEPEPEQEPVSEIQEEK-PEPVLEETVPEDAQKSSSPAPADIAQ 240
Query: 217 SKVEEVPKKSYASIV--KVMKDSALPVSSPPPASLRSIMKIQEQPPASATSPAPASEKQV 274
+ E++ S+AS+ + A+PV+ PP ++ + Q +P + S P Q
Sbjct: 241 TVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVK-VPASQPRPESKPESQIPPQRPQR 299
Query: 275 TNSNATENGNNQEAEGP------------------------SIYLKGLPPSATHALLENE 310
+ N GP +++ LP + L++
Sbjct: 300 DQRVREQRINIPPQRGPRPIREAGEQGDIEPRRMVRHPDSHQLFIGNLPHEVDKSELKDF 359
Query: 311 FRKFGTIRAGGIQVKTQKG---FCFGFVEFEEENAVQSAIEASPIVISGH-RVVVEPKKS 366
F+ +G + ++++ G FGFV F++ VQ + PI+ G R+ VE KK+
Sbjct: 360 FQSYGNV----VELRINSGGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGEVRLNVEEKKT 415
Query: 367 --TRGGNR 372
R G+R
Sbjct: 416 RAAREGDR 423
>sp|P97855|G3BP1_MOUSE Ras GTPase-activating protein-binding protein 1 OS=Mus musculus
GN=G3bp1 PE=1 SV=1
Length = 465
Score = 92.4 bits (228), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 103/426 (24%), Positives = 177/426 (41%), Gaps = 64/426 (15%)
Query: 5 LHQAPTADIVANAFVHQYYLILHQSPQLVHRFYQDISKL--GRPEENGAMSITTTMQA-I 61
+ + P+ +V FV QYY +L+Q+P ++HRFY S G + NG + Q I
Sbjct: 2 VMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYAHGGLDSNGKPADAVYGQKEI 61
Query: 62 NDKILALHYGEFSAEITTVDAQESYNGGVIVLVTGYLTGKDSVRRKFSQSFFLAPQD--- 118
+ K+++ ++ +I VDA + N GV+V V G L+ + R+F Q+F LAP+
Sbjct: 62 HRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVA 121
Query: 119 KGYFVLNDVFRYVDDAY-----------HVGSQATTNDVEAP-ITPDQD---HSPVQENH 163
++V ND+FRY D+ + + + P + PD + N
Sbjct: 122 NKFYVHNDIFRYQDEVFGGFVTEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQTVSND 181
Query: 164 VSDQTAISSEEVSGEEVDNPSENGDGTIEEEEAPVPEVVDAIPDDTH-----VAAESDSK 218
+ + E E P I+E++ P + +A PDD A+
Sbjct: 182 LEEHLEEPVVEPEPEPEPEPEPEPVSDIQEDK-PEAALEEAAPDDVQKSTSPAPADVAPA 240
Query: 219 VEEVPKKSYASIV--KVMKDSALPVSSPPPASLRSIMKIQEQPPASATSPAPASEKQVTN 276
E++ S+AS+ + A+PV+ PP ++ + Q +P + S P Q
Sbjct: 241 QEDLRTFSWASVTSKNLPPSGAVPVTGTPPHVVK-VPASQPRPESKPDSQIPPQRPQRDQ 299
Query: 277 SNATENGNNQEAEGP------------------------SIYLKGLPPSATHALLENEFR 312
+ N GP +++ LP + L++ F+
Sbjct: 300 RVREQRINIPPQRGPRPIREAGEPGDVEPRRMVRHPDSHQLFIGNLPHEVDKSELKDFFQ 359
Query: 313 KFGTIRAGGIQVKTQKG---FCFGFVEFEEENAVQSAIEASPIVISGH-RVVVEPKKS-- 366
FG + ++++ G FGFV F++ VQ + PI+ G R+ VE KK+
Sbjct: 360 NFGNV----VELRINSGGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGAVRLNVEEKKTRA 415
Query: 367 TRGGNR 372
R G+R
Sbjct: 416 AREGDR 421
>sp|Q13283|G3BP1_HUMAN Ras GTPase-activating protein-binding protein 1 OS=Homo sapiens
GN=G3BP1 PE=1 SV=1
Length = 466
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 101/428 (23%), Positives = 180/428 (42%), Gaps = 66/428 (15%)
Query: 5 LHQAPTADIVANAFVHQYYLILHQSPQLVHRFYQDISKL--GRPEENGAMSITTTMQA-I 61
+ + P+ +V FV QYY +L+Q+P ++HRFY S G + NG + Q I
Sbjct: 2 VMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEI 61
Query: 62 NDKILALHYGEFSAEITTVDAQESYNGGVIVLVTGYLTGKDSVRRKFSQSFFLAPQ---D 118
+ K+++ ++ +I VDA + N GV+V V G L+ + R+F Q+F LAP+
Sbjct: 62 HRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVA 121
Query: 119 KGYFVLNDVFRYVDDAY-----------HVGSQATTNDVEAP-ITPDQD----HSPVQEN 162
++V ND+FRY D+ + + + P + PD V N
Sbjct: 122 NKFYVHNDIFRYQDEVFGGFVTEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQAVVSN 181
Query: 163 HVSDQTAISSEEVSGEEVDNPSENGDGTIEEEEAPVPEVVDAIPDDTHVAAE------SD 216
+ + E + P + I+EE+ P P + + P+D ++ +
Sbjct: 182 DMEEHLEEPVAEPEPDPEPEPEQEPVSEIQEEK-PEPVLEETAPEDAQKSSSPAPADIAQ 240
Query: 217 SKVEEVPKKSYASIV--KVMKDSALPVSSPPPASLRSIMKIQEQPPASATSPAPASEKQV 274
+ E++ S+AS+ + A+PV+ PP ++ + Q +P + S P Q
Sbjct: 241 TVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVK-VPASQPRPESKPESQIPPQRPQR 299
Query: 275 TNSNATENGNNQEAEGP------------------------SIYLKGLPPSATHALLENE 310
+ N GP +++ LP + L++
Sbjct: 300 DQRVREQRINIPPQRGPRPIREAGEQGDIEPRRMVRHPDSHQLFIGNLPHEVDKSELKDF 359
Query: 311 FRKFGTIRAGGIQVKTQKG---FCFGFVEFEEENAVQSAIEASPIVISGH-RVVVEPKKS 366
F+ +G + ++++ G FGFV F++ VQ + PI+ G R+ VE KK+
Sbjct: 360 FQSYGNV----VELRINSGGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGEVRLNVEEKKT 415
Query: 367 --TRGGNR 372
R G+R
Sbjct: 416 RAAREGDR 423
>sp|P97379|G3BP2_MOUSE Ras GTPase-activating protein-binding protein 2 OS=Mus musculus
GN=G3bp2 PE=1 SV=2
Length = 482
Score = 85.5 bits (210), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 75/140 (53%), Gaps = 16/140 (11%)
Query: 7 QAPTADIVANAFVHQYYLILHQSPQLVHRFYQDISKL--------GRPEENGAMSITTTM 58
+ P+ +V FV QYY +L+++P+ +HRFY S G+P+E
Sbjct: 4 EKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQE-----AVYGQ 58
Query: 59 QAINDKILALHYGEFSAEITTVDAQESYNGGVIVLVTGYLTGKDSVRRKFSQSFFLAPQ- 117
I+ K+L+L++ E +I VDA + + GV+V V G L+ RKF Q+F LAP+
Sbjct: 59 NDIHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEG 118
Query: 118 --DKGYFVLNDVFRYVDDAY 135
++V ND+FRY D+ +
Sbjct: 119 SVPNKFYVHNDMFRYEDEVF 138
>sp|Q32LC7|G3BP1_BOVIN Ras GTPase-activating protein-binding protein 1 OS=Bos taurus
GN=G3BP PE=2 SV=1
Length = 465
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 76/137 (55%), Gaps = 6/137 (4%)
Query: 5 LHQAPTADIVANAFVHQYYLILHQSPQLVHRFYQDISKL--GRPEENGAMSITTTMQA-I 61
+ + P+ +V FV QYY +L+Q+P ++HRFY S G + NG + Q I
Sbjct: 2 VMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEI 61
Query: 62 NDKILALHYGEFSAEITTVDAQESYNGGVIVLVTGYLTGKDSVRRKFSQSFFLAPQ---D 118
+ K+++ ++ +I VDA + N GV+V V G L+ + R+F Q+F LAP+
Sbjct: 62 HRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVA 121
Query: 119 KGYFVLNDVFRYVDDAY 135
++V ND+FRY D+ +
Sbjct: 122 NKFYVHNDIFRYQDEVF 138
>sp|Q9XJ54|NTF2_ORYSJ Nuclear transport factor 2 OS=Oryza sativa subsp. japonica GN=NTF2
PE=2 SV=1
Length = 122
Score = 57.8 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 47/123 (38%), Positives = 61/123 (49%), Gaps = 11/123 (8%)
Query: 11 ADIVANAFVHQYYLILHQSPQLVHRFYQDISKLGRPEEN--GAMSITTTMQAINDKILAL 68
AD VA AFV YY + + YQD S L + GA AI K+ +L
Sbjct: 3 ADAVAKAFVEHYYRTFDTNRPALVSLYQDGSMLTFEGQQFLGA-------AAIAGKLGSL 55
Query: 69 HYGEFSAEITTVDAQES-YNGGVIVLVTGYL-TGKDSVRRKFSQSFFLAPQDKGYFVLND 126
+ + +I TVD Q S GG++V V+G L TG D KFSQ F L P ++V ND
Sbjct: 56 PFAQCHHDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPAGGNFYVQND 115
Query: 127 VFR 129
+FR
Sbjct: 116 MFR 118
>sp|Q6FRC6|NTF2_CANGA Nuclear transport factor 2 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=NTF2 PE=3
SV=1
Length = 125
Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 34 HRFYQDISKLGRPEENGAMSITTTMQ-----AINDKILALHYGEFSAEITTVDAQ-ESYN 87
++F D S+LG + +M T Q +I +K+++L + + + ITT+DAQ S N
Sbjct: 18 NQFDSDRSQLGNLYRDESMLTFETSQLQGAKSIVEKLVSLPFQKVAHRITTLDAQPASPN 77
Query: 88 GGVIVLVTGYLTGKDSVR-RKFSQSFFLAPQDKGYFVLNDVFR 129
G V+V++TG L D ++FSQ F L P Y+V ND+FR
Sbjct: 78 GDVLVMITGDLLIDDEQNPQRFSQVFHLIPDGNSYYVFNDIFR 120
>sp|Q9P926|NTF2_CANAX Nuclear transport factor 2 OS=Candida albicans GN=NTF2 PE=3 SV=1
Length = 124
Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 17/123 (13%)
Query: 14 VANAFVHQYYLILHQSPQLVHRFYQDISKLGRPEENGAMSITTTMQA-----INDKILAL 68
VA F + YY ++F D S+LG N +M T Q I +K+ +L
Sbjct: 8 VATEFCNFYY----------NQFDSDRSQLGNLYRNESMLTFETSQLQGARDIVEKLASL 57
Query: 69 HYGEFSAEITTVDAQ-ESYNGGVIVLVTG-YLTGKDSVRRKFSQSFFLAPQDKGYFVLND 126
+ + + I+T+DAQ S NG ++V+VTG L ++ +++SQ F L P + Y+V ND
Sbjct: 58 PFQKVAHRISTLDAQPASANGDILVMVTGELLIDEEQNAQRYSQVFHLIPDNGSYYVFND 117
Query: 127 VFR 129
+FR
Sbjct: 118 IFR 120
>sp|P33331|NTF2_YEAST Nuclear transport factor 2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NTF2 PE=1 SV=2
Length = 125
Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 58/103 (56%), Gaps = 7/103 (6%)
Query: 34 HRFYQDISKLGRPEENGAMSITTTMQA-----INDKILALHYGEFSAEITTVDAQ-ESYN 87
++F D S+LG N +M T Q I +K+++L + + ITT+DAQ S N
Sbjct: 18 NQFDTDRSQLGNLYRNESMLTFETSQLQGAKDIVEKLVSLPFQKVQHRITTLDAQPASPN 77
Query: 88 GGVIVLVTG-YLTGKDSVRRKFSQSFFLAPQDKGYFVLNDVFR 129
G V+V++TG L ++ ++FSQ F L P Y+V ND+FR
Sbjct: 78 GDVLVMITGDLLIDEEQNPQRFSQVFHLIPDGNSYYVFNDIFR 120
>sp|Q75AA5|NTF2_ASHGO Nuclear transport factor 2 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=NTF2 PE=3 SV=1
Length = 125
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 58/103 (56%), Gaps = 7/103 (6%)
Query: 34 HRFYQDISKLGRPEENGAMSITTTMQA-----INDKILALHYGEFSAEITTVDAQ-ESYN 87
++F D S+LG + +M T Q I +K+++L + + ITT+DAQ S N
Sbjct: 18 NQFDTDRSQLGNLYRDQSMLTFETSQLQGAKDIVEKLVSLPFQKVQHRITTLDAQPASPN 77
Query: 88 GGVIVLVTGYLTGKDSVR-RKFSQSFFLAPQDKGYFVLNDVFR 129
G V+V++TG L D ++FSQ F L P+ Y+V ND+FR
Sbjct: 78 GDVLVMITGDLLIDDEQNAQRFSQVFHLMPEGNSYYVFNDIFR 120
>sp|P87102|NTF2_NEUCR Nuclear transport factor 2 OS=Neurospora crassa (strain ATCC 24698
/ 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=ntf-2 PE=2 SV=1
Length = 124
Score = 55.1 bits (131), Expect = 1e-06, Method: Composition-based stats.
Identities = 41/120 (34%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 14 VANAFVHQYYLILHQSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALHYGEF 73
+A FV YY + + Y+D S L GA S+ Q I +K+ +L + +
Sbjct: 8 IATQFVAHYYSTFDSDRKNLAGLYRDNSML---TFEGAQSLGA--QGITEKLTSLPFQKV 62
Query: 74 SAEITTVDAQESYNGGVIVLVTGYLTGKDSVRR-KFSQSFFLAPQDKG-YFVLNDVFRYV 131
E DAQ + GG+I+LVTG L D R +SQ+F L+ G +FV ND+F+ V
Sbjct: 63 KHEYGPPDAQPTATGGIIILVTGQLIVDDEQRPLGYSQAFQLSQDASGQWFVFNDIFKLV 122
>sp|Q6CQX4|NTF2_KLULA Nuclear transport factor 2 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=NTF2 PE=3 SV=1
Length = 125
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 17/123 (13%)
Query: 14 VANAFVHQYYLILHQSPQLVHRFYQDISKLGRPEENGAMSI--TTTMQAIND---KILAL 68
+A F YY ++F D ++LG +M TT +Q D K+++L
Sbjct: 8 LAQQFTEFYY----------NQFDSDRTQLGNLYREQSMLTFETTQLQGAKDIVEKLVSL 57
Query: 69 HYGEFSAEITTVDAQ-ESYNGGVIVLVTG-YLTGKDSVRRKFSQSFFLAPQDKGYFVLND 126
+ + + ITT+DAQ S NG V+V++TG L ++ ++FSQ F L P+ Y+V ND
Sbjct: 58 PFQKVAHRITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLMPEGSSYYVYND 117
Query: 127 VFR 129
+FR
Sbjct: 118 IFR 120
>sp|Q6CC82|NTF2_YARLI Nuclear transport factor 2 OS=Yarrowia lipolytica (strain CLIB 122
/ E 150) GN=NTF2 PE=3 SV=1
Length = 123
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
Query: 29 SPQLVHRFYQ----DISKLGRPEENGAMSITTTMQ-----AINDKILALHYGEFSAEITT 79
+ Q +YQ D S+LG + +M T Q AI +K++ L +G+ +I+
Sbjct: 9 AKQFCEFYYQTFDTDRSQLGNLYRDHSMLTFTGTQHQGAQAIVEKLVGLPFGQVRHKISD 68
Query: 80 VDAQ--ESYNGGVIVLVTGYLTGKDSVRRKFSQSFFLAPQDKGYFVLNDVFR 129
+DAQ + G VIVLVTG L ++Q F L P Y+V ND+FR
Sbjct: 69 IDAQPASAQGGDVIVLVTGELCVDGDNPLPYAQVFHLIPDGSSYYVFNDIFR 120
>sp|Q6BWC0|NTF2_DEBHA Nuclear transport factor 2 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=NTF2 PE=3 SV=1
Length = 124
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 17/123 (13%)
Query: 14 VANAFVHQYYLILHQSPQLVHRFYQDISKLGRPEENGAMSITTTMQA-----INDKILAL 68
VA+ F + YY +F D ++LG +M T Q I +K+++L
Sbjct: 8 VASEFCNFYY----------QQFDSDRTQLGNLYREQSMLTFETSQLQGAKDIVEKLVSL 57
Query: 69 HYGEFSAEITTVDAQE-SYNGGVIVLVTGYLTGKDSVR-RKFSQSFFLAPQDKGYFVLND 126
+ + + I+T+DAQ S NG ++V+VTG L D +++SQ F L P Y+V ND
Sbjct: 58 PFQKVAHRISTLDAQPGSPNGDILVMVTGELIIDDEQNAQRYSQVFHLIPDGNSYYVFND 117
Query: 127 VFR 129
+FR
Sbjct: 118 IFR 120
>sp|Q86HW7|NTF2_DICDI Nuclear transport factor 2 OS=Dictyostelium discoideum GN=nutf2
PE=1 SV=1
Length = 127
Score = 52.0 bits (123), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 7/122 (5%)
Query: 14 VANAFVHQYYLILHQSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALHYGEF 73
V FV YY I + + + YQ + L + AI I+ L + +
Sbjct: 11 VGKQFVEHYYGIFDSNRAGLTQIYQQQTTL-----TWEGKFLSGADAIVKHIVELPFQQT 65
Query: 74 SAEITTVDAQESYNGGVIVLVTGYLT--GKDSVRRKFSQSFFLAPQDKGYFVLNDVFRYV 131
+ +I ++D Q++Y G+++ VTG L G+ + KF Q F LA + + ++ND FR V
Sbjct: 66 NRKINSIDCQQTYQPGIMITVTGTLIIDGEAKNQLKFVQVFNLASNNGSFLLINDFFRLV 125
Query: 132 DD 133
D
Sbjct: 126 LD 127
>sp|Q96VN3|NTF2_EMENI Nuclear transport factor 2 OS=Emericella nidulans (strain FGSC A4 /
ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=ntf2 PE=3
SV=1
Length = 125
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 61 INDKILALHYGEFSAEITTVDAQES-YNGGVIVLVTG-YLTGKDSVRRKFSQSFFLAPQD 118
I +K+ +L + + +++T+DAQ S +GG++VLVTG L ++ ++Q+F L P
Sbjct: 49 IIEKLTSLPFQKVQHQVSTLDAQPSGEHGGILVLVTGALLVDEEKNPMNYTQTFQLMPDG 108
Query: 119 KG-YFVLNDVFRYVDDA 134
G YFVLNDVFR + +A
Sbjct: 109 AGSYFVLNDVFRLIYNA 125
>sp|Q21735|NTF2_CAEEL Probable nuclear transport factor 2 OS=Caenorhabditis elegans
GN=ran-4 PE=3 SV=1
Length = 133
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 58/126 (46%), Gaps = 8/126 (6%)
Query: 9 PTADIVANAFVHQYYLILHQSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKIL-- 66
P + VA AF+ YY + Q +S L PE N M+ D IL
Sbjct: 5 PDYESVAKAFIQHYYSKFDVGDGMSRA--QGLSDLYDPE-NSYMTFEGQQAKGRDGILQK 61
Query: 67 --ALHYGEFSAEITTVDAQESYNGGVIVLVTGYLTGKDSVRRKFSQSFFLAPQDKG-YFV 123
L + + IT +D+Q Y+G + V+V G L + FSQ F L P ++G YF+
Sbjct: 62 FTTLGFTKIQRAITVIDSQPLYDGSIQVMVLGQLKTDEDPINPFSQVFILRPNNQGSYFI 121
Query: 124 LNDVFR 129
N++FR
Sbjct: 122 GNEIFR 127
>sp|Q10100|NTF2_SCHPO Nuclear transport factor 2 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=ntf2 PE=3 SV=2
Length = 123
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 59 QAINDKILALHYGEFSAEITTVDAQES-YNGGVIVLVTG-YLTGKDSVRRKFSQSFFLAP 116
+AI +K+++L + I+T+DAQ + G VIV+VTG L ++ + +++SQ F L
Sbjct: 47 KAIVEKLVSLPFQRVQHRISTLDAQPTGTTGSVIVMVTGELLLDEEQMAQRYSQVFHLVN 106
Query: 117 QDKGYFVLNDVFR 129
+ Y+VLND+FR
Sbjct: 107 NNGNYYVLNDLFR 119
>sp|Q8NJ52|NTF2_DAVTA Nuclear transport factor 2 OS=Davidiella tassiana GN=NTF2 PE=1 SV=1
Length = 125
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 61 INDKILALHYGEFSAEITTVDAQES-YNGGVIVLVTGYLTGKDSVR-RKFSQSFFLAPQD 118
I K+ L + ++ TVDAQ S +GG++V+V+G L ++ R ++Q+F L P D
Sbjct: 49 IVGKLQELPFQRIEHQVATVDAQPSNESGGILVVVSGALLVEEERRPMSYTQTFQLLPAD 108
Query: 119 KGYFVLNDVFRYV 131
Y+V NDVFR V
Sbjct: 109 GAYYVFNDVFRLV 121
>sp|Q9C7F5|NTF2_ARATH Nuclear transport factor 2 OS=Arabidopsis thaliana GN=NTF2 PE=2
SV=1
Length = 126
Score = 48.5 bits (114), Expect = 1e-04, Method: Composition-based stats.
Identities = 40/122 (32%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 12 DIVANAFVHQYYLILHQSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALHYG 71
D V+ AFV YY + + YQ+ S L + +Q+I K+ +L +
Sbjct: 7 DAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQK-----IQGVQSIVAKLTSLPFQ 61
Query: 72 EFSAEITTVDAQES-YNGGVIVLVTG--YLTGKDSVRRKFSQSFFLAPQDKG-YFVLNDV 127
+ I+TVD Q S G++V V+G L G++ KFSQ F L P +G ++V ND+
Sbjct: 62 QCKHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHA-LKFSQMFHLMPTPQGSFYVFNDI 120
Query: 128 FR 129
FR
Sbjct: 121 FR 122
>sp|Q22037|ROA1_CAEEL Heterogeneous nuclear ribonucleoprotein A1 OS=Caenorhabditis
elegans GN=hrp-1 PE=1 SV=1
Length = 346
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 293 IYLKGLPPSATHALLENEFRKFGTIRAGGIQVK--TQKGFCFGFVEFEEENAVQSAIEAS 350
+Y+ G+ T +L F K+GT+ I + TQK FGFV F++ ++V +
Sbjct: 116 LYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQK 175
Query: 351 PIVISGHRVVV 361
+++GHR V
Sbjct: 176 SHMVNGHRCDV 186
>sp|P26686|SRR55_DROME Serine-arginine protein 55 OS=Drosophila melanogaster GN=B52 PE=1
SV=4
Length = 376
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Query: 290 GPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAI-E 348
G +Y+ GLP LE F+ +G R I +K +GFVEFE+ A+ E
Sbjct: 3 GSRVYVGGLPYGVRERDLERFFKGYGRTR--DILIKN----GYGFVEFEDYRDADDAVYE 56
Query: 349 ASPIVISGHRVVVEPKKST-RGGN 371
+ + G RVVVEP + T RG N
Sbjct: 57 LNGKELLGERVVVEPARGTARGSN 80
>sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis
elegans GN=rsp-3 PE=1 SV=2
Length = 258
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAI 347
+E +Y+ LP +E+ F K+G I+ + +K+ +G F FVEFE+ + A+
Sbjct: 6 SEDQKVYVGNLPGDVREKEVEDIFHKYGRIKY--VDIKSGRGPAFAFVEFEDHRDAEDAV 63
Query: 348 EASP-IVISGHRVVVE 362
A G R+ VE
Sbjct: 64 RARDGYEFDGRRIRVE 79
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 41.2 bits (95), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 62/138 (44%), Gaps = 13/138 (9%)
Query: 292 SIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEASP 351
+I++ GL T L F +FG + + VK G GFV+F + ++ Q AI+
Sbjct: 296 TIFVGGLDSEVTDEELRQSFNQFGEV----VSVKIPAGKGCGFVQFSDRSSAQEAIQKLS 351
Query: 352 IVISGHRVVVEPKKSTRGGNRGRFSSRAGNGYR-NEGTRGRGNYGGGRGYGRGDFGNR-S 409
I G + V + + G + R +G + N G GR NYG GYG G N+ S
Sbjct: 352 GAIIGKQAV----RLSWGRSPANKQMRTDSGSQWNGGYNGRQNYG---GYGYGASQNQDS 404
Query: 410 EFENRGGIRGGFSNRGGD 427
G G SNR G+
Sbjct: 405 GMYATGAAYGASSNRYGN 422
>sp|Q54Y98|TRA2_DICDI Transformer-2 protein homolog OS=Dictyostelium discoideum GN=tra2
PE=3 SV=1
Length = 326
Score = 39.7 bits (91), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
Query: 260 PASATSPAPASEKQVTNSNATENGNN-QEAEGPSIYLK--GLPPSATHALLENEFRKFGT 316
P SP+ +++ N E N PS L GL P L++EF +FG
Sbjct: 79 PNRGGSPSRDDKRRYGNGGNGETRNRLANTASPSNVLGVFGLAPQTEERDLKDEFSRFGK 138
Query: 317 IRAGGI--QVKTQKGFCFGFVEFE-EENAVQSAIEASPIVISGHRVVVE 362
I + KT + CFGFV FE +E+AV++ E + + G + +
Sbjct: 139 IDHVDLIMDRKTGRSKCFGFVYFENKEDAVRAKEECQDLQLHGKSIRTD 187
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 39.3 bits (90), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 293 IYLKGLPPSATHALLENEFRKFGTIRAGGIQVK--TQKGFCFGFVEFEEENAVQSAIEAS 350
I++ GLPP+ T F +G + I T + FGFV F+ E+AV S + +
Sbjct: 112 IFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKT 171
Query: 351 PIVISGHRVVVE 362
+SG +V V+
Sbjct: 172 FHDLSGKQVEVK 183
>sp|Q7SXP4|SRS1A_DANRE Serine/arginine-rich splicing factor 1A OS=Danio rerio GN=srsf1a
PE=2 SV=2
Length = 257
Score = 38.9 bits (89), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 293 IYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGF-CFGFVEFEEENAVQSAIEASP 351
IY+ LPP +E+ F K+G IR I +K ++G F FVEFE+ + A+ A
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIR--DIDLKNRRGGPPFAFVEFEDPRDAEDAVYARD 74
Query: 352 -IVISGHRVVVEPKKS 366
G+R+ VE +S
Sbjct: 75 GYDYDGYRLRVEFPRS 90
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus
GN=Hnrnpab PE=1 SV=1
Length = 285
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 292 SIYLKGLPPSATHALLENEFRKFGTIRAGGIQV--KTQKGFCFGFVEFEEENAVQSAIEA 349
I++ GL P AT + F +FG I A + + K K F F+ F+EE+ V+ +E
Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK 219
Query: 350 SPIVISGHRV---VVEPK 364
+SG + V +PK
Sbjct: 220 KFHTVSGSKCEIKVAQPK 237
>sp|Q6DII2|SRSF1_XENTR Serine/arginine-rich splicing factor 1 OS=Xenopus tropicalis
GN=srsf1 PE=2 SV=1
Length = 267
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 293 IYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGF-CFGFVEFEEENAVQSAIEASP 351
IY+ LPP +E+ F K+G IR I +K ++G F FVEFE+ + A+
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRD--IDLKNRRGGPPFAFVEFEDPRDAEDAVYGRD 75
Query: 352 -IVISGHRVVVEPKKS 366
G+R+ VE +S
Sbjct: 76 GYDYDGYRLRVEFPRS 91
>sp|Q5R7H2|SRSF1_PONAB Serine/arginine-rich splicing factor 1 OS=Pongo abelii GN=SRSF1
PE=2 SV=3
Length = 248
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 293 IYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGF-CFGFVEFEEENAVQSAIEASP 351
IY+ LPP +E+ F K+G IR I +K ++G F FVEFE+ + A+
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRD--IDLKNRRGGPPFAFVEFEDPRDAEDAVYGRD 75
Query: 352 -IVISGHRVVVE 362
G+R+ VE
Sbjct: 76 GYDYDGYRLRVE 87
>sp|Q3YLA6|SRSF1_PIG Serine/arginine-rich splicing factor 1 OS=Sus scrofa GN=SRSF1 PE=2
SV=3
Length = 248
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 293 IYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGF-CFGFVEFEEENAVQSAIEASP 351
IY+ LPP +E+ F K+G IR I +K ++G F FVEFE+ + A+
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRD--IDLKNRRGGPPFAFVEFEDPRDAEDAVYGRD 75
Query: 352 -IVISGHRVVVE 362
G+R+ VE
Sbjct: 76 GYDYDGYRLRVE 87
>sp|Q6PDM2|SRSF1_MOUSE Serine/arginine-rich splicing factor 1 OS=Mus musculus GN=Srsf1
PE=1 SV=3
Length = 248
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 293 IYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGF-CFGFVEFEEENAVQSAIEASP 351
IY+ LPP +E+ F K+G IR I +K ++G F FVEFE+ + A+
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRD--IDLKNRRGGPPFAFVEFEDPRDAEDAVYGRD 75
Query: 352 -IVISGHRVVVE 362
G+R+ VE
Sbjct: 76 GYDYDGYRLRVE 87
>sp|Q07955|SRSF1_HUMAN Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1
PE=1 SV=2
Length = 248
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 293 IYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGF-CFGFVEFEEENAVQSAIEASP 351
IY+ LPP +E+ F K+G IR I +K ++G F FVEFE+ + A+
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRD--IDLKNRRGGPPFAFVEFEDPRDAEDAVYGRD 75
Query: 352 -IVISGHRVVVE 362
G+R+ VE
Sbjct: 76 GYDYDGYRLRVE 87
>sp|Q0VCY7|SRSF1_BOVIN Serine/arginine-rich splicing factor 1 OS=Bos taurus GN=SRSF1 PE=2
SV=1
Length = 248
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 293 IYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGF-CFGFVEFEEENAVQSAIEASP 351
IY+ LPP +E+ F K+G IR I +K ++G F FVEFE+ + A+
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRD--IDLKNRRGGPPFAFVEFEDPRDAEDAVYGRD 75
Query: 352 -IVISGHRVVVE 362
G+R+ VE
Sbjct: 76 GYDYDGYRLRVE 87
>sp|Q5ZML3|SRSF1_CHICK Serine/arginine-rich splicing factor 1 OS=Gallus gallus GN=SRSF1
PE=1 SV=3
Length = 257
Score = 37.4 bits (85), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 293 IYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGF-CFGFVEFEEENAVQSAI 347
IY+ LPP +E+ F K+G IR I +K ++G F FVEFE+ + A+
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIR--DIDLKNRRGGPPFAFVEFEDPRDAEDAV 71
>sp|O81126|RZP22_ARATH Serine/arginine-rich splicing factor RSZ22 OS=Arabidopsis thaliana
GN=RSZ22 PE=1 SV=1
Length = 200
Score = 37.4 bits (85), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 293 IYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEA 349
+Y+ L P T LE+EFR FG +R+ + + + F++FE+ + AI A
Sbjct: 4 VYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPG---YAFLDFEDPRDARDAIRA 57
>sp|Q9SJA6|RZ22A_ARATH Serine/arginine-rich splicing factor RSZ22A OS=Arabidopsis thaliana
GN=RSZ22A PE=1 SV=1
Length = 196
Score = 37.4 bits (85), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 293 IYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAI 347
+Y+ L P T LE+EFR FG IR+ + + + F++FE+ + AI
Sbjct: 4 VYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPG---YAFLDFEDSRDARDAI 55
>sp|Q6NYA0|SRS1B_DANRE Serine/arginine-rich splicing factor 1B OS=Danio rerio GN=srsf1b
PE=2 SV=1
Length = 245
Score = 37.4 bits (85), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 293 IYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGF-CFGFVEFEEENAVQSAIEASP 351
IY+ LPP +E+ F K+G IR I +K ++G F FVEFE+ + A+
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRD--IDLKNRRGGPPFAFVEFEDPRDAEDAVYGRD 74
Query: 352 -IVISGHRVVVE 362
G+R+ VE
Sbjct: 75 GYDYDGYRLRVE 86
>sp|Q13151|ROA0_HUMAN Heterogeneous nuclear ribonucleoprotein A0 OS=Homo sapiens
GN=HNRNPA0 PE=1 SV=1
Length = 305
Score = 36.2 bits (82), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 293 IYLKGLPPSATHALLENEFRKFGTIRAGGIQV--KTQKGFCFGFVEFEEENAVQSAIEAS 350
+++ GL + + L F FGT+ + V +T++ CFGFV + +A+ AS
Sbjct: 9 LFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAAS 68
Query: 351 PIVISGHRV 359
P + G+ V
Sbjct: 69 PHAVDGNTV 77
Score = 33.9 bits (76), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 44/114 (38%), Gaps = 6/114 (5%)
Query: 255 IQEQPPASATSPAPASEKQVTNSNATENGNN----QEAEGPSIYLKGLPPSATHALLENE 310
++E A A SP V A ++ A+ +++ GL L
Sbjct: 58 VEEADAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEH 117
Query: 311 FRKFGTIRAGGIQVKTQKG--FCFGFVEFEEENAVQSAIEASPIVISGHRVVVE 362
F +FGT+ I Q G FGFV F+ +A A I GHRV V+
Sbjct: 118 FSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVK 171
>sp|Q9CX86|ROA0_MOUSE Heterogeneous nuclear ribonucleoprotein A0 OS=Mus musculus
GN=Hnrnpa0 PE=1 SV=1
Length = 305
Score = 36.2 bits (82), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 293 IYLKGLPPSATHALLENEFRKFGTIRAGGIQV--KTQKGFCFGFVEFEEENAVQSAIEAS 350
+++ GL + + L F FGT+ + V +T++ CFGFV + +A+ AS
Sbjct: 9 LFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAAS 68
Query: 351 PIVISGHRV 359
P + G+ V
Sbjct: 69 PHAVDGNTV 77
>sp|Q8CIN6|CELF3_MOUSE CUGBP Elav-like family member 3 OS=Mus musculus GN=Celf3 PE=2 SV=1
Length = 465
Score = 35.8 bits (81), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQV--KTQKGFCFGFVEFEEENAVQSA 346
+G +I++ LP T + + F FG + + + V T + CFGFV F+ + Q+A
Sbjct: 378 DGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAA 437
Query: 347 IEA 349
I+A
Sbjct: 438 IQA 440
>sp|Q18409|RSP6_CAEEL Probable splicing factor, arginine/serine-rich 6 OS=Caenorhabditis
elegans GN=rsp-6 PE=3 SV=1
Length = 179
Score = 35.4 bits (80), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 293 IYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEASPI 352
+Y+ GLP AT LE F +FG IR + ++ F FVE+++ + A+ A
Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKVWV---ARRPPGFAFVEYDDVRDAEDAVRA--- 58
Query: 353 VISGHRVV 360
+ G R+
Sbjct: 59 -LDGSRIC 65
>sp|P21522|ROA1_SCHAM Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
OS=Schistocerca americana GN=HNRNP PE=2 SV=1
Length = 342
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 281 ENGNNQEAEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQV--KTQKGFCFGFVEFE 338
EN + + +++ GL T L+ F ++G I + KT++ FGF+ +
Sbjct: 7 ENDHGEPEHVRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYS 66
Query: 339 EENAVQSAIEASPIVISGHRVVVEPKKST 367
+ V A A P + G VVEPK++
Sbjct: 67 RAHMVDDAQNARPHKVDGR--VVEPKRAV 93
>sp|Q5R9L3|G3BP2_PONAB Ras GTPase-activating protein-binding protein 2 OS=Pongo abelii
GN=G3BP2 PE=2 SV=1
Length = 482
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 293 IYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFC--FGFVEFEEENAVQSAIEAS 350
+++ LP L+ F FG + I K G FGFV F++ VQ + A
Sbjct: 333 LFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIAK 392
Query: 351 PIVISGH-RVVVEPKKS 366
PI+ G R+ VE KK+
Sbjct: 393 PIMFRGEVRLNVEEKKT 409
>sp|Q9UN86|G3BP2_HUMAN Ras GTPase-activating protein-binding protein 2 OS=Homo sapiens
GN=G3BP2 PE=1 SV=2
Length = 482
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 293 IYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFC--FGFVEFEEENAVQSAIEAS 350
+++ LP L+ F FG + I K G FGFV F++ VQ + A
Sbjct: 333 LFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIAK 392
Query: 351 PIVISGH-RVVVEPKKS 366
PI+ G R+ VE KK+
Sbjct: 393 PIMFRGEVRLNVEEKKT 409
>sp|Q6TY21|EPA2B_XENLA Embryonic polyadenylate-binding protein 2-B OS=Xenopus laevis
GN=Pabpn1l-b PE=1 SV=1
Length = 218
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 285 NQEAEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGF--CFGFVEFEEENA 342
+E + S+Y+ + +T LE F G+I I G + ++EF E N+
Sbjct: 87 KKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNS 146
Query: 343 VQSAIEASPIVISGHRVVVEPKKSTRGG 370
V +A+ V G + V PK++ G
Sbjct: 147 VDAAVAMDETVFRGRTIKVLPKRTNMPG 174
>sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea
mays GN=RAB15 PE=1 SV=1
Length = 157
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 293 IYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFC--FGFVEFEEENAVQSAIE 348
++ GL + ++ LEN F +G I + + G FGFV F EN++ AIE
Sbjct: 10 CFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIE 67
>sp|Q9FZ84|RBG6_ARATH Glycine-rich RNA-binding protein 6, mitochondrial OS=Arabidopsis
thaliana GN=RBG6 PE=2 SV=1
Length = 155
Score = 33.5 bits (75), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 272 KQVTNSNATENGNNQEAEGPS-IYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGF 330
+ + SNA GN + PS I++ GL PS LL+ F FG I + + + G
Sbjct: 18 RALQASNAMLQGN--LSLTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGL 75
Query: 331 C--FGFVEFEEENAVQSAIEA 349
FGFV ++ +A++A
Sbjct: 76 SRGFGFVTYDSIEVANNAMQA 96
>sp|Q43472|GRP_HORVU Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare
GN=blt801 PE=1 SV=1
Length = 161
Score = 33.5 bits (75), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 293 IYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFC--FGFVEFEEENAVQSAIEA- 349
++ GL + L+N F K+G + I + G FGFV F + A++ AIEA
Sbjct: 8 CFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAM 67
Query: 350 SPIVISGHRVVVEPKKSTR 368
+ + G + V +S R
Sbjct: 68 NGQDLDGRNITVNEAQSRR 86
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.130 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 185,319,175
Number of Sequences: 539616
Number of extensions: 8978902
Number of successful extensions: 41874
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 926
Number of HSP's that attempted gapping in prelim test: 30262
Number of HSP's gapped (non-prelim): 6812
length of query: 461
length of database: 191,569,459
effective HSP length: 121
effective length of query: 340
effective length of database: 126,275,923
effective search space: 42933813820
effective search space used: 42933813820
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)