Query 012554
Match_columns 461
No_of_seqs 453 out of 3110
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 03:51:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012554.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012554hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0116 RasGAP SH3 binding pro 100.0 1.5E-63 3.3E-68 502.1 35.6 348 8-367 10-367 (419)
2 KOG2104 Nuclear transport fact 100.0 4.4E-34 9.4E-39 232.2 11.8 118 10-132 5-123 (126)
3 cd00780 NTF2 Nuclear transport 100.0 1.9E-32 4.1E-37 235.4 15.6 118 10-132 1-119 (119)
4 PF02136 NTF2: Nuclear transpo 99.9 2.7E-26 5.9E-31 196.4 13.6 113 14-130 1-118 (118)
5 KOG4353 RNA export factor NXT1 99.9 1.7E-24 3.6E-29 178.9 7.3 116 11-133 12-137 (139)
6 PLN03134 glycine-rich RNA-bind 99.7 2.4E-16 5.1E-21 139.5 14.7 80 288-367 32-114 (144)
7 KOG0105 Alternative splicing f 99.6 5.3E-15 1.1E-19 130.8 9.8 76 290-367 6-83 (241)
8 KOG0107 Alternative splicing f 99.6 1.3E-13 2.9E-18 121.2 16.1 76 289-367 9-85 (195)
9 TIGR01659 sex-lethal sex-letha 99.6 6.5E-14 1.4E-18 141.1 15.7 78 290-367 193-275 (346)
10 TIGR01648 hnRNP-R-Q heterogene 99.5 6.3E-13 1.4E-17 141.0 16.3 72 290-367 233-307 (578)
11 KOG0121 Nuclear cap-binding pr 99.5 1.5E-13 3.3E-18 114.8 8.0 78 288-365 34-114 (153)
12 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 3.5E-12 7.5E-17 129.5 13.6 80 288-367 267-349 (352)
13 PF00076 RRM_1: RNA recognitio 99.4 2.7E-12 5.9E-17 98.4 8.3 68 293-360 1-70 (70)
14 KOG0125 Ataxin 2-binding prote 99.4 4.9E-12 1.1E-16 121.2 11.4 79 289-367 95-174 (376)
15 KOG0113 U1 small nuclear ribon 99.3 2.7E-11 5.9E-16 114.9 14.7 82 286-367 97-181 (335)
16 TIGR01659 sex-lethal sex-letha 99.3 6.9E-12 1.5E-16 126.5 10.5 79 288-366 105-186 (346)
17 KOG0149 Predicted RNA-binding 99.3 3.2E-12 6.9E-17 117.7 7.3 79 287-365 9-89 (247)
18 PLN03120 nucleic acid binding 99.3 1.7E-11 3.7E-16 116.6 10.6 76 290-366 4-79 (260)
19 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.3 1.3E-11 2.8E-16 125.3 10.5 79 289-367 2-83 (352)
20 PLN03213 repressor of silencin 99.2 2.1E-11 4.6E-16 122.1 9.2 78 288-367 8-88 (759)
21 KOG0122 Translation initiation 99.2 5.5E-11 1.2E-15 110.0 9.2 80 288-367 187-269 (270)
22 KOG4207 Predicted splicing fac 99.2 4.9E-11 1.1E-15 107.7 8.0 79 289-367 12-93 (256)
23 PLN03121 nucleic acid binding 99.2 1E-10 2.3E-15 109.5 10.0 76 289-365 4-79 (243)
24 PF14259 RRM_6: RNA recognitio 99.2 7.5E-11 1.6E-15 90.9 7.6 68 293-360 1-70 (70)
25 KOG0117 Heterogeneous nuclear 99.1 9E-10 1.9E-14 109.7 15.5 74 288-367 257-331 (506)
26 TIGR01645 half-pint poly-U bin 99.1 1.9E-10 4.2E-15 122.5 10.4 79 289-367 203-284 (612)
27 TIGR01645 half-pint poly-U bin 99.1 1.8E-10 3.9E-15 122.7 10.1 78 288-365 105-185 (612)
28 smart00362 RRM_2 RNA recogniti 99.1 3.6E-10 7.8E-15 85.9 8.9 71 292-362 1-72 (72)
29 KOG0148 Apoptosis-promoting RN 99.1 5.2E-10 1.1E-14 104.9 11.2 76 288-367 162-238 (321)
30 TIGR01628 PABP-1234 polyadenyl 99.0 6.4E-10 1.4E-14 120.2 10.5 80 288-367 283-364 (562)
31 KOG0114 Predicted RNA-binding 99.0 1.3E-09 2.9E-14 88.1 8.9 78 288-367 16-95 (124)
32 KOG4212 RNA-binding protein hn 99.0 1.5E-09 3.2E-14 107.7 10.5 79 289-367 43-124 (608)
33 TIGR01642 U2AF_lg U2 snRNP aux 99.0 1.5E-09 3.2E-14 115.9 11.1 80 288-367 293-375 (509)
34 KOG0130 RNA-binding protein RB 99.0 9.5E-10 2.1E-14 93.0 7.3 80 288-367 70-152 (170)
35 KOG0146 RNA-binding protein ET 99.0 3.6E-10 7.8E-15 105.6 5.3 80 288-367 283-365 (371)
36 TIGR01628 PABP-1234 polyadenyl 99.0 1.4E-09 3.1E-14 117.4 10.3 77 291-367 1-80 (562)
37 TIGR01648 hnRNP-R-Q heterogene 99.0 1.6E-09 3.4E-14 115.3 9.8 75 289-363 57-134 (578)
38 TIGR01622 SF-CC1 splicing fact 99.0 2.2E-09 4.7E-14 113.0 10.5 77 290-366 186-265 (457)
39 smart00360 RRM RNA recognition 99.0 3.4E-09 7.4E-14 80.0 8.4 68 295-362 1-71 (71)
40 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.0 2.5E-09 5.5E-14 113.2 10.1 74 290-367 2-78 (481)
41 cd00590 RRM RRM (RNA recogniti 98.9 6.1E-09 1.3E-13 79.4 9.3 72 292-363 1-74 (74)
42 TIGR01622 SF-CC1 splicing fact 98.9 3.4E-09 7.3E-14 111.6 10.4 79 288-366 87-167 (457)
43 KOG0111 Cyclophilin-type pepti 98.9 6.2E-10 1.4E-14 101.4 4.1 80 288-367 8-90 (298)
44 COG0724 RNA-binding proteins ( 98.9 4.3E-09 9.3E-14 101.1 9.9 76 290-365 115-193 (306)
45 KOG0109 RNA-binding protein LA 98.9 1.2E-09 2.5E-14 103.5 5.4 71 291-367 3-74 (346)
46 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.9 5.1E-09 1.1E-13 110.9 10.6 77 288-367 273-351 (481)
47 KOG0144 RNA-binding protein CU 98.9 1.8E-09 3.8E-14 107.2 5.5 80 288-367 122-206 (510)
48 KOG0145 RNA-binding protein EL 98.8 2.4E-08 5.2E-13 93.3 10.4 81 287-367 38-121 (360)
49 KOG0127 Nucleolar protein fibr 98.8 1.4E-08 3.1E-13 103.4 8.5 80 288-367 290-378 (678)
50 KOG0124 Polypyrimidine tract-b 98.8 4.3E-09 9.3E-14 102.3 4.1 75 289-363 112-189 (544)
51 PF13893 RRM_5: RNA recognitio 98.7 3.6E-08 7.7E-13 72.6 7.3 55 307-364 1-56 (56)
52 KOG0117 Heterogeneous nuclear 98.7 3.2E-08 6.8E-13 98.9 9.1 77 289-365 82-162 (506)
53 KOG0126 Predicted RNA-binding 98.7 1.7E-09 3.7E-14 95.9 -0.0 78 288-365 33-113 (219)
54 KOG0127 Nucleolar protein fibr 98.7 2.4E-08 5.2E-13 101.9 8.0 78 290-367 117-196 (678)
55 KOG0131 Splicing factor 3b, su 98.7 1.4E-08 3.1E-13 90.3 5.6 78 288-365 7-87 (203)
56 KOG4205 RNA-binding protein mu 98.7 5.3E-08 1.2E-12 96.0 10.2 79 289-367 96-176 (311)
57 KOG0108 mRNA cleavage and poly 98.7 2.6E-08 5.7E-13 102.3 8.2 77 291-367 19-98 (435)
58 KOG0148 Apoptosis-promoting RN 98.7 2.2E-08 4.9E-13 94.1 6.8 78 290-367 62-142 (321)
59 smart00361 RRM_1 RNA recogniti 98.7 7E-08 1.5E-12 74.5 7.4 59 304-362 2-70 (70)
60 KOG0415 Predicted peptidyl pro 98.7 3E-08 6.5E-13 96.3 6.4 78 289-366 238-318 (479)
61 TIGR01642 U2AF_lg U2 snRNP aux 98.6 1.6E-07 3.4E-12 100.3 11.7 73 288-364 173-257 (509)
62 KOG0153 Predicted RNA-binding 98.6 1E-07 2.2E-12 92.6 7.7 76 288-367 226-303 (377)
63 KOG0123 Polyadenylate-binding 98.6 1.2E-07 2.7E-12 96.4 8.6 75 292-367 78-153 (369)
64 cd00531 NTF2_like Nuclear tran 98.6 1.2E-06 2.6E-11 73.4 13.2 115 16-130 2-123 (124)
65 KOG4206 Spliceosomal protein s 98.6 1.4E-07 3.1E-12 87.0 7.9 77 290-367 9-90 (221)
66 KOG0144 RNA-binding protein CU 98.6 2.3E-07 5.1E-12 92.4 9.9 80 287-366 31-116 (510)
67 KOG0147 Transcriptional coacti 98.6 5.4E-08 1.2E-12 99.7 5.5 79 289-367 277-358 (549)
68 KOG4205 RNA-binding protein mu 98.6 4.4E-08 9.5E-13 96.6 4.5 79 289-367 5-85 (311)
69 KOG4212 RNA-binding protein hn 98.5 1.6E-07 3.4E-12 93.5 6.8 73 288-363 534-607 (608)
70 KOG0145 RNA-binding protein EL 98.5 4.5E-07 9.7E-12 84.9 9.0 79 288-366 276-357 (360)
71 KOG0110 RNA-binding protein (R 98.5 2.7E-07 5.8E-12 97.2 7.7 76 290-365 515-596 (725)
72 KOG0110 RNA-binding protein (R 98.5 9.7E-08 2.1E-12 100.4 4.4 80 288-367 611-693 (725)
73 KOG4661 Hsp27-ERE-TATA-binding 98.5 7E-07 1.5E-11 91.5 10.4 80 288-367 403-485 (940)
74 KOG0109 RNA-binding protein LA 98.4 2.4E-07 5.3E-12 88.0 5.2 75 287-367 75-150 (346)
75 KOG0132 RNA polymerase II C-te 98.4 5.1E-07 1.1E-11 95.7 7.7 75 289-367 420-495 (894)
76 KOG0146 RNA-binding protein ET 98.4 3.8E-07 8.1E-12 85.7 4.7 80 288-367 17-101 (371)
77 KOG1457 RNA binding protein (c 98.4 6.1E-06 1.3E-10 75.9 12.3 80 288-367 32-118 (284)
78 KOG0124 Polypyrimidine tract-b 98.3 9.4E-07 2E-11 86.3 6.9 80 288-367 208-290 (544)
79 KOG0106 Alternative splicing f 98.3 6.5E-07 1.4E-11 83.4 5.3 71 291-367 2-73 (216)
80 KOG0533 RRM motif-containing p 98.3 8.9E-06 1.9E-10 77.4 11.8 78 290-367 83-162 (243)
81 KOG0131 Splicing factor 3b, su 98.3 1.3E-06 2.7E-11 78.1 5.5 80 288-367 94-177 (203)
82 PF10429 Mtr2: Nuclear pore RN 98.2 3.6E-06 7.9E-11 74.2 6.2 98 13-117 5-109 (166)
83 KOG4209 Splicing factor RNPS1, 98.1 5.5E-06 1.2E-10 78.9 7.1 80 288-367 99-180 (231)
84 KOG4208 Nucleolar RNA-binding 98.1 7.1E-06 1.5E-10 74.8 7.3 78 288-367 47-130 (214)
85 KOG4211 Splicing factor hnRNP- 97.9 2.9E-05 6.3E-10 79.1 8.3 79 288-367 8-86 (510)
86 KOG0123 Polyadenylate-binding 97.9 2.9E-05 6.2E-10 79.2 8.1 73 291-367 2-75 (369)
87 KOG1548 Transcription elongati 97.9 3.8E-05 8.3E-10 75.0 8.0 80 288-367 132-221 (382)
88 KOG4211 Splicing factor hnRNP- 97.9 0.00019 4.2E-09 73.2 12.8 77 290-367 103-182 (510)
89 KOG3973 Uncharacterized conser 97.8 7.8E-05 1.7E-09 72.7 8.4 12 428-439 448-459 (465)
90 KOG0151 Predicted splicing reg 97.8 9.3E-05 2E-09 78.2 8.7 80 287-366 171-256 (877)
91 KOG1995 Conserved Zn-finger pr 97.7 0.0002 4.3E-09 70.7 9.3 80 288-367 64-154 (351)
92 KOG4454 RNA binding protein (R 97.6 3E-05 6.5E-10 71.3 2.0 77 289-365 8-85 (267)
93 KOG4849 mRNA cleavage factor I 97.6 0.00013 2.9E-09 71.2 6.3 74 290-363 80-158 (498)
94 KOG1457 RNA binding protein (c 97.6 7.9E-05 1.7E-09 68.7 4.3 63 290-354 210-273 (284)
95 KOG4660 Protein Mei2, essentia 97.5 0.00011 2.4E-09 76.0 5.5 70 288-360 73-143 (549)
96 PF15008 DUF4518: Domain of un 97.5 0.00084 1.8E-08 64.5 10.9 125 8-132 124-260 (262)
97 KOG0226 RNA-binding proteins [ 97.4 0.00014 3E-09 68.5 4.3 76 288-363 188-266 (290)
98 PF13474 SnoaL_3: SnoaL-like d 97.4 0.0023 4.9E-08 53.8 11.2 109 16-128 2-116 (121)
99 PF08777 RRM_3: RNA binding mo 97.3 0.00053 1.2E-08 57.3 6.1 70 290-363 1-76 (105)
100 PF04059 RRM_2: RNA recognitio 97.2 0.0027 5.7E-08 52.1 9.0 76 291-366 2-86 (97)
101 KOG3763 mRNA export factor TAP 97.2 0.0017 3.6E-08 68.0 9.3 124 9-134 335-499 (585)
102 PF11608 Limkain-b1: Limkain b 97.2 0.0019 4E-08 50.9 7.4 70 291-367 3-77 (90)
103 TIGR02246 conserved hypothetic 97.1 0.014 3.1E-07 49.5 13.5 109 15-128 6-123 (128)
104 KOG4210 Nuclear localization s 97.1 0.00044 9.5E-09 68.1 4.3 78 290-367 184-264 (285)
105 KOG0106 Alternative splicing f 97.1 0.00049 1.1E-08 64.3 4.4 68 289-362 98-166 (216)
106 PRK11634 ATP-dependent RNA hel 97.0 0.0064 1.4E-07 66.7 12.7 70 291-366 487-562 (629)
107 KOG1456 Heterogeneous nuclear 97.0 0.026 5.6E-07 56.1 15.0 68 297-367 129-199 (494)
108 KOG0120 Splicing factor U2AF, 96.9 0.00092 2E-08 69.8 4.1 80 288-367 287-369 (500)
109 PF14534 DUF4440: Domain of un 96.8 0.024 5.3E-07 46.0 11.5 101 17-123 3-107 (107)
110 KOG0129 Predicted RNA-binding 96.7 0.0047 1E-07 63.8 7.3 63 288-350 368-433 (520)
111 KOG1190 Polypyrimidine tract-b 96.5 0.0088 1.9E-07 60.0 8.1 75 290-367 297-373 (492)
112 KOG0129 Predicted RNA-binding 96.5 0.0067 1.4E-07 62.7 7.1 62 288-350 257-326 (520)
113 KOG4206 Spliceosomal protein s 96.3 0.015 3.2E-07 54.3 7.7 74 289-365 145-220 (221)
114 KOG1855 Predicted RNA-binding 96.3 0.029 6.3E-07 56.8 10.2 64 287-350 228-306 (484)
115 KOG2202 U2 snRNP splicing fact 96.2 0.019 4E-07 54.6 7.8 61 306-366 84-147 (260)
116 KOG0147 Transcriptional coacti 96.1 0.0033 7.1E-08 65.3 2.4 77 288-364 177-255 (549)
117 PF12893 Lumazine_bd_2: Putati 96.0 0.13 2.8E-06 43.4 11.7 104 16-129 7-116 (116)
118 COG5175 MOT2 Transcriptional r 96.0 0.015 3.2E-07 57.0 6.4 80 288-367 112-203 (480)
119 PF14605 Nup35_RRM_2: Nup53/35 95.7 0.033 7.1E-07 40.4 5.5 52 291-347 2-53 (53)
120 PF12680 SnoaL_2: SnoaL-like d 95.6 0.089 1.9E-06 42.0 8.7 72 19-98 1-75 (102)
121 KOG0105 Alternative splicing f 95.5 0.14 3.1E-06 46.3 10.0 57 289-350 114-170 (241)
122 KOG1365 RNA-binding protein Fu 95.2 0.018 3.8E-07 57.4 3.6 74 291-364 162-240 (508)
123 KOG0120 Splicing factor U2AF, 95.1 0.045 9.9E-07 57.4 6.6 62 305-366 424-491 (500)
124 PF05172 Nup35_RRM: Nup53/35/4 94.9 0.1 2.2E-06 43.1 6.8 75 289-364 5-89 (100)
125 KOG4307 RNA binding protein RB 94.8 0.079 1.7E-06 56.7 7.3 75 288-363 864-943 (944)
126 KOG3262 H/ACA small nucleolar 94.7 0.22 4.8E-06 44.9 8.8 24 303-326 87-110 (215)
127 cd00781 ketosteroid_isomerase 94.5 0.38 8.3E-06 40.4 9.8 51 16-69 6-57 (122)
128 KOG3152 TBP-binding protein, a 94.4 0.028 6.1E-07 53.3 2.6 69 290-358 74-157 (278)
129 KOG1190 Polypyrimidine tract-b 94.4 0.11 2.4E-06 52.4 6.8 77 288-366 412-490 (492)
130 PF08952 DUF1866: Domain of un 94.3 0.14 3E-06 45.0 6.5 74 288-367 25-107 (146)
131 KOG2193 IGF-II mRNA-binding pr 94.1 0.039 8.5E-07 55.7 3.0 71 291-367 2-76 (584)
132 PF10309 DUF2414: Protein of u 94.1 0.31 6.7E-06 36.4 7.1 54 290-350 5-62 (62)
133 KOG2314 Translation initiation 93.8 0.18 3.8E-06 52.9 7.3 74 290-363 58-140 (698)
134 KOG0112 Large RNA-binding prot 93.7 0.077 1.7E-06 58.4 4.7 76 288-367 453-531 (975)
135 KOG1548 Transcription elongati 93.6 0.22 4.7E-06 49.4 7.1 77 288-366 263-351 (382)
136 KOG1365 RNA-binding protein Fu 93.4 0.1 2.2E-06 52.3 4.5 78 290-367 280-362 (508)
137 PF08332 CaMKII_AD: Calcium/ca 92.9 4.1 9E-05 35.2 13.2 111 12-125 3-121 (128)
138 KOG2416 Acinus (induces apopto 92.4 0.13 2.8E-06 54.2 3.8 76 288-367 442-522 (718)
139 TIGR02096 conserved hypothetic 92.0 2.3 4.9E-05 35.9 10.7 60 18-80 3-65 (129)
140 KOG0128 RNA-binding protein SA 91.5 0.012 2.7E-07 64.1 -4.9 68 288-355 665-735 (881)
141 KOG0115 RNA-binding protein p5 91.2 0.23 5E-06 47.3 3.8 76 290-365 31-112 (275)
142 KOG4307 RNA binding protein RB 90.7 0.16 3.4E-06 54.5 2.4 74 288-362 432-509 (944)
143 KOG1456 Heterogeneous nuclear 90.7 3.1 6.8E-05 41.8 11.2 77 288-367 285-363 (494)
144 PF15023 DUF4523: Protein of u 90.0 1.8 3.8E-05 37.9 7.7 73 287-364 83-159 (166)
145 KOG2253 U1 snRNP complex, subu 89.8 0.52 1.1E-05 50.5 5.3 68 289-363 39-107 (668)
146 KOG4676 Splicing factor, argin 89.4 0.37 7.9E-06 48.5 3.7 72 291-362 8-84 (479)
147 KOG0128 RNA-binding protein SA 89.4 0.16 3.5E-06 55.7 1.3 77 290-366 736-814 (881)
148 KOG1996 mRNA splicing factor [ 88.7 1.2 2.7E-05 43.2 6.5 59 305-363 301-363 (378)
149 PRK10590 ATP-dependent RNA hel 88.1 5.4 0.00012 42.1 11.7 23 290-317 314-336 (456)
150 KOG2591 c-Mpl binding protein, 87.8 0.85 1.8E-05 48.0 5.2 69 289-362 174-247 (684)
151 PRK11634 ATP-dependent RNA hel 87.6 1.1 2.4E-05 49.3 6.4 12 339-350 500-511 (629)
152 KOG0112 Large RNA-binding prot 87.4 0.13 2.8E-06 56.7 -1.0 75 288-362 370-446 (975)
153 KOG2135 Proteins containing th 87.1 0.33 7.1E-06 50.0 1.7 75 289-367 371-446 (526)
154 PF13577 SnoaL_4: SnoaL-like d 85.8 9.6 0.00021 31.7 10.0 66 16-83 10-78 (127)
155 PF03284 PHZA_PHZB: Phenazine 84.1 14 0.00031 32.4 10.0 102 12-115 17-128 (162)
156 KOG0116 RasGAP SH3 binding pro 83.7 1.9 4.2E-05 44.7 5.5 12 339-350 301-312 (419)
157 KOG2068 MOT2 transcription fac 82.8 0.55 1.2E-05 46.5 1.1 80 288-367 75-163 (327)
158 PF08675 RNA_bind: RNA binding 81.5 4.2 9.2E-05 32.3 5.3 54 290-350 9-62 (87)
159 PF03880 DbpA: DbpA RNA bindin 80.8 1.9 4.1E-05 33.3 3.2 67 292-364 2-74 (74)
160 PF05918 API5: Apoptosis inhib 80.6 0.52 1.1E-05 50.5 0.0 17 11-27 38-54 (556)
161 PF12870 Lumazine_bd: Lumazine 79.0 13 0.00028 30.1 8.1 103 8-123 6-110 (111)
162 COG4875 Uncharacterized protei 79.0 40 0.00086 28.8 12.1 111 8-126 33-147 (156)
163 KOG4285 Mitotic phosphoprotein 78.4 7.6 0.00016 38.1 7.1 69 290-363 197-266 (350)
164 PF11767 SET_assoc: Histone ly 78.4 11 0.00025 28.5 6.7 54 301-361 11-65 (66)
165 PF05918 API5: Apoptosis inhib 76.2 0.84 1.8E-05 49.0 0.0 9 358-366 456-464 (556)
166 PRK06958 single-stranded DNA-b 74.1 8 0.00017 35.5 5.8 10 291-300 6-15 (182)
167 PF03467 Smg4_UPF3: Smg-4/UPF3 72.9 4.7 0.0001 36.9 4.0 79 288-366 5-97 (176)
168 COG4319 Ketosteroid isomerase 64.5 52 0.0011 28.7 8.4 93 28-126 26-127 (137)
169 KOG4210 Nuclear localization s 61.3 4.2 9E-05 40.2 1.3 74 289-362 87-163 (285)
170 PF12642 TpcC: Conjugative tra 58.5 58 0.0013 30.7 8.7 88 13-124 140-231 (232)
171 KOG4410 5-formyltetrahydrofola 55.6 53 0.0011 32.1 7.6 48 290-340 330-377 (396)
172 PRK08241 RNA polymerase factor 54.2 76 0.0016 31.8 9.2 54 12-68 213-267 (339)
173 COG1512 Beta-propeller domains 53.9 17 0.00036 35.6 4.1 11 58-68 48-58 (271)
174 PF04847 Calcipressin: Calcipr 53.6 34 0.00074 31.5 5.8 60 303-366 8-70 (184)
175 PF07366 SnoaL: SnoaL-like pol 51.6 62 0.0013 26.9 6.9 59 20-82 5-66 (126)
176 TIGR02960 SigX5 RNA polymerase 50.6 1.1E+02 0.0023 30.4 9.5 52 14-68 205-257 (324)
177 PF15601 Imm42: Immunity prote 49.2 10 0.00022 33.0 1.5 67 17-88 16-92 (134)
178 PF12287 Caprin-1_C: Cytoplasm 48.4 42 0.00092 33.2 5.8 6 428-433 302-307 (316)
179 PRK11901 hypothetical protein; 47.5 1.9E+02 0.0042 29.0 10.3 65 287-355 242-309 (327)
180 COG4907 Predicted membrane pro 47.3 17 0.00036 37.9 3.0 36 92-130 105-140 (595)
181 PF04094 DUF390: Protein of un 44.7 1E+02 0.0022 34.1 8.5 23 297-319 6-28 (828)
182 PF08863 YolD: YolD-like prote 43.9 70 0.0015 25.2 5.7 73 29-116 4-76 (92)
183 PF07576 BRAP2: BRCA1-associat 43.8 1.9E+02 0.0042 24.2 8.9 66 290-355 13-80 (110)
184 PF11533 DUF3225: Protein of u 43.3 2.1E+02 0.0047 24.5 13.7 115 11-132 9-124 (125)
185 cd06404 PB1_aPKC PB1 domain is 43.2 50 0.0011 26.2 4.4 48 23-70 22-70 (83)
186 COG3631 Ketosteroid isomerase- 42.6 2.2E+02 0.0049 24.6 9.0 69 15-83 6-78 (133)
187 COG5073 VID24 Vacuolar import 42.5 9.2 0.0002 36.3 0.3 75 17-102 52-126 (272)
188 PF03276 Gag_spuma: Spumavirus 41.4 1.7E+02 0.0037 31.4 9.2 12 349-360 425-436 (582)
189 PF05941 Chordopox_A20R: Chord 40.3 1.2E+02 0.0025 30.6 7.5 100 16-128 173-281 (334)
190 KOG4574 RNA-binding protein (c 40.0 20 0.00043 40.1 2.3 73 291-367 299-374 (1007)
191 KOG4660 Protein Mei2, essentia 39.4 42 0.00091 35.8 4.5 79 289-367 387-473 (549)
192 PF03468 XS: XS domain; Inter 39.2 63 0.0014 27.4 4.9 46 303-349 30-76 (116)
193 smart00593 RUN domain involved 36.9 47 0.001 24.6 3.4 43 17-68 12-54 (64)
194 KOG2318 Uncharacterized conser 35.3 1.4E+02 0.003 32.3 7.5 74 289-362 173-301 (650)
195 KOG4676 Splicing factor, argin 32.9 10 0.00022 38.5 -1.1 64 290-355 151-214 (479)
196 PF12642 TpcC: Conjugative tra 32.5 84 0.0018 29.6 5.2 34 14-47 2-40 (232)
197 PF15513 DUF4651: Domain of un 32.5 85 0.0018 23.5 4.0 18 305-322 9-26 (62)
198 KOG2295 C2H2 Zn-finger protein 32.3 1.1E+02 0.0023 32.9 6.1 10 105-114 164-173 (648)
199 PF02759 RUN: RUN domain; Int 29.9 38 0.00081 28.7 2.1 48 12-68 66-122 (133)
200 PRK10905 cell division protein 28.0 6.3E+02 0.014 25.4 12.1 65 288-356 245-312 (328)
201 PF07292 NID: Nmi/IFP 35 domai 27.7 62 0.0013 26.0 2.8 31 333-363 1-33 (88)
202 PF14026 DUF4242: Protein of u 26.9 3E+02 0.0065 21.3 8.6 62 293-354 3-71 (77)
203 COG5353 Uncharacterized protei 26.6 2.8E+02 0.006 24.6 6.7 57 288-344 85-156 (161)
204 PF06851 DUF1247: Protein of u 26.0 27 0.00059 30.4 0.5 42 17-71 93-134 (148)
205 COG4907 Predicted membrane pro 26.0 64 0.0014 33.8 3.2 19 115-133 99-117 (595)
206 COG3266 DamX Uncharacterized p 24.2 6.9E+02 0.015 24.5 9.8 64 288-355 209-275 (292)
207 TIGR03636 L23_arch archaeal ri 24.0 2.3E+02 0.005 22.1 5.3 60 292-351 15-75 (77)
208 KOG2044 5'-3' exonuclease HKE1 22.4 3E+02 0.0064 31.1 7.5 31 55-85 202-237 (931)
209 KOG1924 RhoA GTPase effector D 21.9 3.5E+02 0.0075 30.6 7.8 14 21-34 310-323 (1102)
210 PRK04537 ATP-dependent RNA hel 21.7 1.1E+03 0.023 25.8 13.8 11 307-317 338-348 (572)
211 PF05876 Terminase_GpA: Phage 21.6 2.2E+02 0.0049 30.9 6.6 78 9-97 277-359 (557)
212 KOG4483 Uncharacterized conser 21.6 1.7E+02 0.0037 30.2 5.1 55 291-349 392-446 (528)
213 COG4922 Uncharacterized protei 21.4 3.2E+02 0.0069 23.2 5.9 46 17-68 9-56 (129)
214 cd06402 PB1_p62 The PB1 domain 21.4 2.1E+02 0.0045 23.0 4.7 29 41-69 48-76 (87)
215 PRK14548 50S ribosomal protein 21.3 2.6E+02 0.0056 22.2 5.2 59 293-351 23-82 (84)
216 KOG4661 Hsp27-ERE-TATA-binding 21.0 4.9E+02 0.011 28.2 8.5 35 52-88 107-142 (940)
217 PF13355 DUF4101: Protein of u 20.3 3.9E+02 0.0086 22.4 6.5 52 73-124 55-116 (117)
218 KOG2044 5'-3' exonuclease HKE1 20.2 3.5E+02 0.0076 30.6 7.5 11 120-130 336-346 (931)
No 1
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-63 Score=502.09 Aligned_cols=348 Identities=41% Similarity=0.671 Sum_probs=230.4
Q ss_pred CCCHHHHHHHHHHHHHHHHccCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCCCCcceEEEEEeeeeeeCC
Q 012554 8 APTADIVANAFVHQYYLILHQSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALHYGEFSAEITTVDAQESYN 87 (461)
Q Consensus 8 ~~~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~I~~~d~q~s~~ 87 (461)
.++++.||++||+|||++|++.|+.||+||.++|.|+|.|.||+|..++++++||++|++|+|+.|+++|.+||+|.|++
T Consensus 10 ~~~~~~vg~~Fv~qYY~~L~~~P~~lhrfY~~~S~ltr~~~dg~m~s~t~~~~I~~~i~sld~~~~s~eI~tvdsQ~S~~ 89 (419)
T KOG0116|consen 10 VPTPQLVGNEFVRQYYNVLQNSPSKLHRFYMDDSVLTRPGLDGKMVSVTGLEAIHEKIMSLDYEVCSVEISTVDSQASLE 89 (419)
T ss_pred CCCHHHHHHHHHHHHHHHHhhChHHHHHHhhccceeeccCCCCceEEEecHHHhhhheeecCCCceeEEEEEEehhhhcc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEEEEEcCCCCcceeEEEEEEEEeCCeEEEEcceEEeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcc
Q 012554 88 GGVIVLVTGYLTGKDSVRRKFSQSFFLAPQDKGYFVLNDVFRYVDDAYHVGSQATTNDVEAPITPDQDHSPVQENHVSDQ 167 (461)
Q Consensus 88 ~~ilv~V~G~~~~~~~~~~~F~q~F~L~~~~~~y~v~nd~fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (461)
+||||+|+|+|++++.+.|+|+|||||++|+++|||+||||||||+.+..+. +..+++++.+ +.........+.+++
T Consensus 90 ~GvvI~VtG~lt~~~~~rRkF~QtFfLapq~~~yfVlNDiFRfvde~~~~e~--~~~~vp~~~~-~~~~~~~~~~~~~~~ 166 (419)
T KOG0116|consen 90 KGVVIMVTGYLTNKDGPRRKFSQTFFLAPQEKGYFVLNDIFRFVDEEFEPEA--NTDEVPEANP-AVVVSVEKASQLVEA 166 (419)
T ss_pred CCeEEEEEEEEEeCCCcceEEEEEEEEeecCCceEEEechhhhccccccccc--ccccCCCCCc-ceeeccccccccccc
Confidence 9999999999999999999999999999999999999999999998872211 1111111100 000000000000000
Q ss_pred ccCCcccccCccccCCCCCCCCCccCCCCCCCCccCCCC-CCC---CCCcCCCCCcCCCCCCChhhHhhhhccCCCCCCC
Q 012554 168 TAISSEEVSGEEVDNPSENGDGTIEEEEAPVPEVVDAIP-DDT---HVAAESDSKVEEVPKKSYASIVKVMKDSALPVSS 243 (461)
Q Consensus 168 ~~~~~~~~~~~~~~~p~~~~~~~~~~e~~~~~e~~~~~~-~~~---~~~~~~~~~~~~~~~~s~Asi~~~~~~~~~p~~~ 243 (461)
..+.. .++...+....+...+.+..+..+...+.+ +.+ .....+..++.+.+++|||+++..++...++...
T Consensus 167 ~~~~~----~~~~~~~~~~~~V~~~~~~~~~~~~~~~~~ee~v~~~~~~~~p~~~~~~~~~~s~asv~~~~~~~~~~~~~ 242 (419)
T KOG0116|consen 167 VVESE----PEPEPEPKAEDEVEVPEEATVEDEAKEKTKEELVIQQTVSEAPAAPQGDAPKKSFASVVKVLKKSAAVQQS 242 (419)
T ss_pred ccccC----CCCcccccccCceeccccccccccccccCchhhcccccccCCCccccccccchhhhhhhhhccccccccee
Confidence 00000 000000000000000000000000000111 111 0111222236788999999999988766544221
Q ss_pred C-CCCCCCC-CCCCCCCC-CCCCCCCCCCCCcCCCCCCCCCCCCCC-CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeE
Q 012554 244 P-PPASLRS-IMKIQEQP-PASATSPAPASEKQVTNSNATENGNNQ-EAEGPSIYLKGLPPSATHALLENEFRKFGTIRA 319 (461)
Q Consensus 244 ~-~p~~~~~-~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~ 319 (461)
. .|....+ .++..... .....++.|.... ......+.+ .....+|||+|||.+++..+|+++|.+||.|+.
T Consensus 243 ~~~p~~~~~~~~p~~~~~~~~~s~~~~p~~~~-----~~~n~~~~~~~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~ 317 (419)
T KOG0116|consen 243 KGSPPQIQPQQQPSTKPQAERQSKPPSPVRES-----KSGNSNNQEPRADGLGIFVKNLPPDATPAELEEVFKQFGPIKE 317 (419)
T ss_pred ccCCCccccccCCccCcchhhccCCCCccccc-----cccccCCcceeecccceEeecCCCCCCHHHHHHHHhhcccccc
Confidence 1 1111100 00000000 0000011111100 000011111 155667999999999999999999999999999
Q ss_pred eEEEEeC--cCCccEEEEEEccHHHHHHHHHhCCCcccCceeEEeecccc
Q 012554 320 GGIQVKT--QKGFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEPKKST 367 (461)
Q Consensus 320 ~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~a~~~ 367 (461)
..|.++. ++..|||||+|.+.++++.||++.++.|++++|.|+++++.
T Consensus 318 ~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 318 GGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecccc
Confidence 9898876 44559999999999999999999999999999999999886
No 2
>KOG2104 consensus Nuclear transport factor 2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.4e-34 Score=232.24 Aligned_cols=118 Identities=33% Similarity=0.540 Sum_probs=114.0
Q ss_pred CHHHHHHHHHHHHHHHHccCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCCCCcceEEEEEeeeeeeCCCc
Q 012554 10 TADIVANAFVHQYYLILHQSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALHYGEFSAEITTVDAQESYNGG 89 (461)
Q Consensus 10 ~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~I~~~d~q~s~~~~ 89 (461)
.++.||+.||++||.+|+.+|.+|..||.+.|+|+|+|. .++|.++|.+|+.+|||++|++.|+++||||++++|
T Consensus 5 ~~e~v~~~FvqhYY~~FD~dR~ql~~lY~~~S~LTfEGq-----q~qG~~~IveKl~sLpFqkiqh~IttvD~QPt~~g~ 79 (126)
T KOG2104|consen 5 VYEAVAKAFVQHYYSLFDNDRSQLGALYIDTSMLTFEGQ-----QIQGKDAIVEKLTSLPFQKIQHSITTVDSQPTPDGG 79 (126)
T ss_pred cHHHHHHHHHHHHHHHhcCchhHhhhhhcccceeeEcch-----hhcchHHHHHHHhcCChhhhhceeeecccccCCCCc
Confidence 579999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred EEEEEEEEEEcCCCCcceeEEEEEEEEe-CCeEEEEcceEEeec
Q 012554 90 VIVLVTGYLTGKDSVRRKFSQSFFLAPQ-DKGYFVLNDVFRYVD 132 (461)
Q Consensus 90 ilv~V~G~~~~~~~~~~~F~q~F~L~~~-~~~y~v~nd~fr~~~ 132 (461)
|||+|+|+|+.++++..+|+|+|+|.+. .+.|||.|||||+--
T Consensus 80 ilv~V~G~Lk~dEd~~~~FsQvF~L~~n~~~~~~v~ndiFRLn~ 123 (126)
T KOG2104|consen 80 ILVMVVGQLKLDEDPILRFSQVFLLKPNIQGSYYVFNDIFRLNL 123 (126)
T ss_pred EEEEEeeeeeeccCCccceeeEEEEeEcCCCCEEEEeeeEEEec
Confidence 9999999999999999999999999988 589999999999864
No 3
>cd00780 NTF2 Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins.
Probab=100.00 E-value=1.9e-32 Score=235.35 Aligned_cols=118 Identities=49% Similarity=0.749 Sum_probs=113.7
Q ss_pred CHHHHHHHHHHHHHHHHccCchhhhccccCCceeeccC-CCCcccccccHHHHHHHHHhCCCCcceEEEEEeeeeeeCCC
Q 012554 10 TADIVANAFVHQYYLILHQSPQLVHRFYQDISKLGRPE-ENGAMSITTTMQAINDKILALHYGEFSAEITTVDAQESYNG 88 (461)
Q Consensus 10 ~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~l~~~~-~~~~~~~~~g~~~I~~~~~~l~~~~~~~~I~~~d~q~s~~~ 88 (461)
++++||++||++||++|+++|+.|++||.++|+|+|++ . .+.|+++|.++|++|+++.++++|.++|||++.++
T Consensus 1 ~~~~v~~~Fv~~YY~~l~~~~~~L~~fY~~~s~~~~~~~~-----~~~g~~~I~~~l~~lp~~~~~~~i~~~d~q~~~~~ 75 (119)
T cd00780 1 SAEDVAKAFVQQYYSIFDNNREGLHRLYGDTSMLSREGMK-----QVTGRDAIVEKLSSLPFQKTKHKITTVDSQPTPSG 75 (119)
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHhhcCCCcEEEECCce-----EecCHHHHHHHHHhCCCcceEEEEEEEeeeEcCCC
Confidence 47899999999999999999999999999999999998 4 88999999999999999889999999999999999
Q ss_pred cEEEEEEEEEEcCCCCcceeEEEEEEEEeCCeEEEEcceEEeec
Q 012554 89 GVIVLVTGYLTGKDSVRRKFSQSFFLAPQDKGYFVLNDVFRYVD 132 (461)
Q Consensus 89 ~ilv~V~G~~~~~~~~~~~F~q~F~L~~~~~~y~v~nd~fr~~~ 132 (461)
+|||+|+|+|+.++...++|+|+|+|.+++++|||+||||||++
T Consensus 76 ~ili~V~G~~~~~~~~~~~F~q~F~L~~~~~~~~I~nD~fr~~~ 119 (119)
T cd00780 76 GVIVMVTGSLKLDEQPPRKFSQTFVLAPQNGGYFVLNDIFRFVD 119 (119)
T ss_pred CEEEEEEEEEEECCCCceeEeEEEEEEecCCeEEEEeeEEEecC
Confidence 99999999999999999999999999999999999999999986
No 4
>PF02136 NTF2: Nuclear transport factor 2 (NTF2) domain; InterPro: IPR002075 Nuclear transport factor 2 (NTF2) is a homodimer which stimulates efficient nuclear import of a cargo protein. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. NTF2 folds into a cone with a deep hydrophobic cavity, the opening of which is surrounded by several negatively charged residues. RanGDP binds to NTF2 by inserting a conserved phenylalanine residue into the hydrophobic pocket of NTF2 and making electrostatic interactions with the conserved negatively charged residues that surround the cavity []. This entry represent the main structural domain of NTF2 and related domains which are found in other nuclear import proteins.; GO: 0006810 transport, 0005622 intracellular; PDB: 3UJM_B 1JKG_B 1JN5_B 1M98_A 3MG1_A 3MG2_A 3MG3_B 2Z76_A 2Z7A_D 2Z77_A ....
Probab=99.94 E-value=2.7e-26 Score=196.40 Aligned_cols=113 Identities=37% Similarity=0.638 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHcc-Cchhhhccc-cCCceeeccCCCCcccccccHHHHHHHHHhCCCCcceEEEEEeeee--eeCCCc
Q 012554 14 VANAFVHQYYLILHQ-SPQLVHRFY-QDISKLGRPEENGAMSITTTMQAINDKILALHYGEFSAEITTVDAQ--ESYNGG 89 (461)
Q Consensus 14 vg~~Fv~~YY~~l~~-~p~~l~~fY-~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~I~~~d~q--~s~~~~ 89 (461)
||+.||++||++|++ +|+.|++|| .+.|.+.|.+. ..+.|.++|.+++.+|+.+.+++.|.++||| .+.+++
T Consensus 1 v~~~Fv~~Yy~~~d~~~~~~L~~~Y~~~~s~~~~~~~----~~~~G~~~I~~~~~~l~~~~~~~~i~~~d~qp~~~~~~~ 76 (118)
T PF02136_consen 1 VANSFVQQYYQLFDSGDREGLHKLYHDDASFLTWNGN----RPVVGREAIQEFFQSLPATGVQHRITSVDCQPSPSSDGS 76 (118)
T ss_dssp HHHHHHHHHHHHHHHTHGGGGGGGEEEEEEEEEETTE----CEEESHHHHHHHHHHHTTSSEEEEEEEEEEEEEEECCSE
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHcCCCeeecCCCc----hhhhhHHHHHHHHhcCCCcccEEEecccccccccccCCc
Confidence 799999999999999 999999999 67778888764 3789999999999999999899999999999 578999
Q ss_pred EEEEEEEEEEcCCCC-cceeEEEEEEEEeCCeEEEEcceEEe
Q 012554 90 VIVLVTGYLTGKDSV-RRKFSQSFFLAPQDKGYFVLNDVFRY 130 (461)
Q Consensus 90 ilv~V~G~~~~~~~~-~~~F~q~F~L~~~~~~y~v~nd~fr~ 130 (461)
|+|+|+|+++.++.+ .|+|+|+|+|.+++++|+|.||||||
T Consensus 77 i~i~v~G~~~~~~~~~~~~F~q~FvL~~~~~~~~I~nd~~r~ 118 (118)
T PF02136_consen 77 ILITVTGQFKEDDNPNPRRFSQTFVLVPQNNGYFIANDIFRF 118 (118)
T ss_dssp EEEEEEEEEEETTSEEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEEeEEEecCCCcccEEEEEEEEEEcCCEEEEEeeEEEC
Confidence 999999999999876 69999999999999999999999998
No 5
>KOG4353 consensus RNA export factor NXT1 [RNA processing and modification]
Probab=99.91 E-value=1.7e-24 Score=178.88 Aligned_cols=116 Identities=25% Similarity=0.367 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHHHccCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCCCCcceEEEEEeeeeeeCCC--
Q 012554 11 ADIVANAFVHQYYLILHQSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALHYGEFSAEITTVDAQESYNG-- 88 (461)
Q Consensus 11 ~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~I~~~d~q~s~~~-- 88 (461)
+-.-+.+||+.||+.|+++|..|.+||.++|+|+|+|. .+.|++.|.+++..||.+ ++.|.++||||.++.
T Consensus 12 ~cr~A~eFv~~YY~smD~rR~~i~rlY~~~atlvWNGn-----~v~g~esls~ff~~LPsS--~~qi~~lD~Qpv~dqat 84 (139)
T KOG4353|consen 12 ACRAAEEFVNVYYSSMDKRRRGIGRLYLDNATLVWNGN-----PVSGTESLSEFFNMLPSS--EFQINDLDCQPVHDQAT 84 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhhccceEEEcCC-----cchhHHHHHHHHHhCCCc--cccccccccccchhhcc
Confidence 34568999999999999999999999999999999997 999999999999999998 999999999998753
Q ss_pred ----cEEEEEEEEEEcCCCCcceeEEEEEEEEeCCeEE----EEcceEEeecC
Q 012554 89 ----GVIVLVTGYLTGKDSVRRKFSQSFFLAPQDKGYF----VLNDVFRYVDD 133 (461)
Q Consensus 89 ----~ilv~V~G~~~~~~~~~~~F~q~F~L~~~~~~y~----v~nd~fr~~~~ 133 (461)
+|||+|+|.|+.+++..|.|.|||+|..++..|- |..|||||+|.
T Consensus 85 ~~q~~vLvvvsGtVkFdG~k~r~F~qt~ll~~e~~~~k~~~~v~Sd~fr~~d~ 137 (139)
T KOG4353|consen 85 GSQTTVLVVVSGTVKFDGNKQRVFNQTFLLTAEDPPFKTVWKVASDCFRFQDW 137 (139)
T ss_pred cccceEEEEEeeeEEEcCCccccccceeEEeecCCccchhhhhhhhhhhhhhc
Confidence 6999999999999999999999999999987666 99999999874
No 6
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.71 E-value=2.4e-16 Score=139.55 Aligned_cols=80 Identities=25% Similarity=0.478 Sum_probs=72.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc--CCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ--KGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~--k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
...++|||+||++++|+++|+++|++||.|+.+.|..+.. ++++||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 4578999999999999999999999999999987766643 47999999999999999999988 99999999999998
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
+.+
T Consensus 112 ~~~ 114 (144)
T PLN03134 112 NDR 114 (144)
T ss_pred CcC
Confidence 875
No 7
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=5.3e-15 Score=130.79 Aligned_cols=76 Identities=30% Similarity=0.431 Sum_probs=68.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcC-CccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecccc
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQK-GFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKST 367 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k-~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~~ 367 (461)
.++|||+|||.++.+.+|+++|-+||.|..+ .+++.. ..+||||+|++..+|+.||... +..++|.+|+|++.+.-
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~i--eLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREI--ELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEE--EeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 6899999999999999999999999999984 444433 5789999999999999999988 99999999999998753
No 8
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=1.3e-13 Score=121.21 Aligned_cols=76 Identities=29% Similarity=0.417 Sum_probs=69.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecccc
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKST 367 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~~ 367 (461)
-.++|||+||+..+++.+|+.+|..||.|..++|... ..|||||||++..+|..|+..| +..|+|..|+||....+
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn---PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN---PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec---CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 3789999999999999999999999999999766442 6789999999999999999999 99999999999998766
No 9
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.56 E-value=6.5e-14 Score=141.14 Aligned_cols=78 Identities=24% Similarity=0.393 Sum_probs=67.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccC--ceeEEeec
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISG--HRVVVEPK 364 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g--~~i~V~~a 364 (461)
.++|||+|||+++|+++|+++|++||.|+.+.|..+. .+.++||||+|.+.++|++||+.+ +..|.+ +.|+|.++
T Consensus 193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a 272 (346)
T TIGR01659 193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLA 272 (346)
T ss_pred cceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEEC
Confidence 4689999999999999999999999999997776553 237899999999999999999999 777765 68899888
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
..+
T Consensus 273 ~~~ 275 (346)
T TIGR01659 273 EEH 275 (346)
T ss_pred Ccc
Confidence 765
No 10
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.48 E-value=6.3e-13 Score=140.98 Aligned_cols=72 Identities=21% Similarity=0.364 Sum_probs=66.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcC--CCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeeccc
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKF--GTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKS 366 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~--G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~ 366 (461)
.++|||+||++++++++|+++|++| |.|++|.+ .++||||+|++.++|++||+.+ +..|+|+.|+|.++++
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~------~rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp 306 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKK------IRDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKP 306 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEe------ecCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 5789999999999999999999999 99988543 3569999999999999999988 9999999999999988
Q ss_pred c
Q 012554 367 T 367 (461)
Q Consensus 367 ~ 367 (461)
.
T Consensus 307 ~ 307 (578)
T TIGR01648 307 V 307 (578)
T ss_pred C
Confidence 6
No 11
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=1.5e-13 Score=114.76 Aligned_cols=78 Identities=18% Similarity=0.231 Sum_probs=69.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcC--CccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQK--GFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k--~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
..+++|||+||++-++|++|.++|+++|.|+.+.+-++..+ .-||+||+|.+.++|..||.-+ +..|+.+.|+|.+.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 56899999999999999999999999999998655555554 6689999999999999999999 99999999999986
Q ss_pred c
Q 012554 365 K 365 (461)
Q Consensus 365 ~ 365 (461)
-
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 4
No 12
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.39 E-value=3.5e-12 Score=129.53 Aligned_cols=80 Identities=20% Similarity=0.294 Sum_probs=72.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
..++.|||+|||+++++++|+++|++||.|..+.|..+. ++++|||||+|.+.++|.+||..+ +..|+||.|+|.++
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 456789999999999999999999999999998877663 348999999999999999999999 99999999999998
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
..+
T Consensus 347 ~~~ 349 (352)
T TIGR01661 347 TNK 349 (352)
T ss_pred cCC
Confidence 765
No 13
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.36 E-value=2.7e-12 Score=98.42 Aligned_cols=68 Identities=31% Similarity=0.538 Sum_probs=61.4
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEe-CcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeE
Q 012554 293 IYLKGLPPSATHALLENEFRKFGTIRAGGIQVK-TQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVV 360 (461)
Q Consensus 293 lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~-~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~ 360 (461)
|||+|||.++|+++|+++|++||.|..+.+... ..+.++||||+|.+.++|++|++.+ +..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999998777664 3347899999999999999999987 9999999885
No 14
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.35 E-value=4.9e-12 Score=121.24 Aligned_cols=79 Identities=20% Similarity=0.295 Sum_probs=73.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecccc
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKST 367 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~~ 367 (461)
.-++|+|.|||+...|.||+.+|.+||+|.+|+|.+..+.+|||+||+|++.++|++|-+++ +..|.||+|.|..+..+
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 46899999999999999999999999999998887665559999999999999999999999 99999999999988765
No 15
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=2.7e-11 Score=114.87 Aligned_cols=82 Identities=23% Similarity=0.427 Sum_probs=73.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEe--CcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEe
Q 012554 286 QEAEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVK--TQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVE 362 (461)
Q Consensus 286 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~--~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~ 362 (461)
...+-++|||+-|+++++|..|+..|+.||.|+.+.|+.+ +.+++|||||+|++..++.+|.+.. +++|+|+.|.|.
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 3367899999999999999999999999999999766554 4559999999999999999999988 999999999999
Q ss_pred ecccc
Q 012554 363 PKKST 367 (461)
Q Consensus 363 ~a~~~ 367 (461)
.-+.+
T Consensus 177 vERgR 181 (335)
T KOG0113|consen 177 VERGR 181 (335)
T ss_pred ecccc
Confidence 87766
No 16
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.32 E-value=6.9e-12 Score=126.48 Aligned_cols=79 Identities=27% Similarity=0.389 Sum_probs=71.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc--CCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ--KGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~--k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
...++|||+|||+++|+++|+++|++||.|+.|.|..+.. ++++||||+|.++++|++||+.+ +..|.++.|+|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 5689999999999999999999999999999987766533 37899999999999999999988 99999999999987
Q ss_pred cc
Q 012554 365 KS 366 (461)
Q Consensus 365 ~~ 366 (461)
++
T Consensus 185 ~p 186 (346)
T TIGR01659 185 RP 186 (346)
T ss_pred cc
Confidence 65
No 17
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=3.2e-12 Score=117.72 Aligned_cols=79 Identities=20% Similarity=0.363 Sum_probs=69.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc--CCccEEEEEEccHHHHHHHHHhCCCcccCceeEEeec
Q 012554 287 EAEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ--KGFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEPK 364 (461)
Q Consensus 287 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~--k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~a 364 (461)
+...++|||++|+|+++.+.|+++|++||+|.+..|..+.. |+|||+||+|.|.++|.+|++.....|+||+..|..+
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLA 88 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchh
Confidence 34578999999999999999999999999999876655533 4899999999999999999988888999999888876
Q ss_pred c
Q 012554 365 K 365 (461)
Q Consensus 365 ~ 365 (461)
-
T Consensus 89 ~ 89 (247)
T KOG0149|consen 89 S 89 (247)
T ss_pred h
Confidence 4
No 18
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.28 E-value=1.7e-11 Score=116.59 Aligned_cols=76 Identities=17% Similarity=0.240 Sum_probs=67.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhCCCcccCceeEEeeccc
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEPKKS 366 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~a~~ 366 (461)
.++|||+||++.+|+++|+++|+.||.|.++.|..+.. .++||||+|++.++++.||...+..|+|+.|+|..+..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~-~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE-RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence 67999999999999999999999999999976654432 57899999999999999997559999999999998764
No 19
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.28 E-value=1.3e-11 Score=125.29 Aligned_cols=79 Identities=14% Similarity=0.322 Sum_probs=71.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecc
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKK 365 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~ 365 (461)
+..+|||+|||.++++++|+++|++||.|..|.|..+. .+++|||||+|.+.++|++||+.+ +..|.|+.|+|++++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 35799999999999999999999999999998776653 337899999999999999999988 999999999999987
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
+.
T Consensus 82 ~~ 83 (352)
T TIGR01661 82 PS 83 (352)
T ss_pred cc
Confidence 65
No 20
>PLN03213 repressor of silencing 3; Provisional
Probab=99.24 E-value=2.1e-11 Score=122.12 Aligned_cols=78 Identities=24% Similarity=0.351 Sum_probs=70.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccH--HHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEE--NAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~--~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
..+.+||||||++.+++++|+.+|..||.|+.|.|. +.+++|||||+|.+. .++.+||..+ +..++|+.|+|..+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 346899999999999999999999999999997765 445799999999987 7899999999 99999999999999
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
++.
T Consensus 86 KP~ 88 (759)
T PLN03213 86 KEH 88 (759)
T ss_pred cHH
Confidence 985
No 21
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=5.5e-11 Score=110.01 Aligned_cols=80 Identities=23% Similarity=0.264 Sum_probs=73.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcC--CccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQK--GFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k--~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
.+.++|-|.||+.++++++|+++|.+||.|.++.|.++... ++|||||.|.+.++|.+||+.| ++-++.-.|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 57899999999999999999999999999999777665443 8999999999999999999999 99999999999999
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
+|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 984
No 22
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.19 E-value=4.9e-11 Score=107.66 Aligned_cols=79 Identities=20% Similarity=0.291 Sum_probs=70.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcC--CccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecc
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQK--GFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKK 365 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k--~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~ 365 (461)
...+|-|-||.+-++.++|+.+|++||.|-+|.|..+... .+|||||-|.+..+|+.||++| +.+|+|+.|+|..++
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 4678999999999999999999999999998766554322 8999999999999999999999 999999999999887
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
-.
T Consensus 92 yg 93 (256)
T KOG4207|consen 92 YG 93 (256)
T ss_pred cC
Confidence 54
No 23
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.18 E-value=1e-10 Score=109.53 Aligned_cols=76 Identities=24% Similarity=0.296 Sum_probs=67.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhCCCcccCceeEEeecc
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEPKK 365 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~a~ 365 (461)
.+++|||+||++.+|+++|+++|+.||.|.+|.|..+ .+.++||||+|+++++++.||...+..|.++.|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D-~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS-GEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC-CCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 4789999999999999999999999999999766544 336689999999999999999766999999999998754
No 24
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.18 E-value=7.5e-11 Score=90.87 Aligned_cols=68 Identities=31% Similarity=0.516 Sum_probs=57.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcC-CccEEEEEEccHHHHHHHHHhC-CCcccCceeE
Q 012554 293 IYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQK-GFCFGFVEFEEENAVQSAIEAS-PIVISGHRVV 360 (461)
Q Consensus 293 lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k-~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~ 360 (461)
|||+|||+++++++|+++|+.||.|..+.+....+. .+++|||+|.+.++|.+|+..+ +..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999988655443222 6899999999999999999999 6999999875
No 25
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=9e-10 Score=109.74 Aligned_cols=74 Identities=22% Similarity=0.340 Sum_probs=67.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeeccc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKS 366 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~ 366 (461)
...+-|||+||+.++|++.|+++|++||.|.+|.. .+-||||.|.+.++|.+|++.+ +..|+|..|.|..+++
T Consensus 257 s~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk------~rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP 330 (506)
T KOG0117|consen 257 SKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKK------PRDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKP 330 (506)
T ss_pred hheeeeeeeccchhhhHHHHHHHHHhccceEEeec------ccceeEEeecchHHHHHHHHHhcCceecCceEEEEecCC
Confidence 34689999999999999999999999999998432 2459999999999999999999 9999999999999998
Q ss_pred c
Q 012554 367 T 367 (461)
Q Consensus 367 ~ 367 (461)
.
T Consensus 331 ~ 331 (506)
T KOG0117|consen 331 V 331 (506)
T ss_pred h
Confidence 6
No 26
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.13 E-value=1.9e-10 Score=122.49 Aligned_cols=79 Identities=18% Similarity=0.301 Sum_probs=71.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecc
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKK 365 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~ 365 (461)
..++|||+||++++++++|+++|+.||.|+.+.|..+. ++++|||||+|++.+++.+||+.+ +..|+|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 35799999999999999999999999999998776653 237899999999999999999999 999999999999888
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
+.
T Consensus 283 ~p 284 (612)
T TIGR01645 283 TP 284 (612)
T ss_pred CC
Confidence 65
No 27
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.13 E-value=1.8e-10 Score=122.73 Aligned_cols=78 Identities=23% Similarity=0.324 Sum_probs=69.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
...++|||+||++++++++|+++|.+||.|+++.|..+. .+++|||||+|.+.+++++||+.+ +..|+|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 457899999999999999999999999999998776653 348999999999999999999988 99999999999854
Q ss_pred c
Q 012554 365 K 365 (461)
Q Consensus 365 ~ 365 (461)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 3
No 28
>smart00362 RRM_2 RNA recognition motif.
Probab=99.12 E-value=3.6e-10 Score=85.85 Aligned_cols=71 Identities=38% Similarity=0.568 Sum_probs=61.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEe
Q 012554 292 SIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVE 362 (461)
Q Consensus 292 ~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~ 362 (461)
+|||+|||..+++++|+++|.+||.|..+.+.....+.++++||+|.+.+.+++|+..+ +..++|+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999986554433336789999999999999999998 799999998874
No 29
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=5.2e-10 Score=104.90 Aligned_cols=76 Identities=25% Similarity=0.377 Sum_probs=68.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeeccc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKS 366 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~ 366 (461)
++.+++||+|++..+||++||+.|+.||.|..+.| .. -+||+||.|++.|+|.+||..+ +.+|+|+.+++.|-+.
T Consensus 162 p~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRv--Fk--~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe 237 (321)
T KOG0148|consen 162 PDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRV--FK--DQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKE 237 (321)
T ss_pred CCCceEEeCCcCccccHHHHHHhcccCCcceEEEE--ec--ccceEEEEecchhhHHHHHHHhcCceeCceEEEEecccc
Confidence 67899999999999999999999999999998444 33 4689999999999999999999 9999999999999887
Q ss_pred c
Q 012554 367 T 367 (461)
Q Consensus 367 ~ 367 (461)
.
T Consensus 238 ~ 238 (321)
T KOG0148|consen 238 G 238 (321)
T ss_pred C
Confidence 5
No 30
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.05 E-value=6.4e-10 Score=120.15 Aligned_cols=80 Identities=23% Similarity=0.395 Sum_probs=72.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc-CCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ-KGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKK 365 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~-k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~ 365 (461)
....+|||+||+.++|+++|+++|++||.|..+.|..+.. +++|||||+|.+.++|.+||..+ +..|+|+.|+|.++.
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~ 362 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQ 362 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEecc
Confidence 4578899999999999999999999999999987777632 38899999999999999999998 999999999999988
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
.+
T Consensus 363 ~k 364 (562)
T TIGR01628 363 RK 364 (562)
T ss_pred Cc
Confidence 75
No 31
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.03 E-value=1.3e-09 Score=88.08 Aligned_cols=78 Identities=23% Similarity=0.304 Sum_probs=69.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcC-CccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQK-GFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKK 365 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k-~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~ 365 (461)
....-|||+|||+++|.+++.++|.+||.|.. |.+-+.+ .+|.|||.|++..+|++|+..+ +..+.++.|.|-...
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQ--IRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQ--IRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEE--EEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 45689999999999999999999999999987 5555555 7899999999999999999999 999999999998765
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
+.
T Consensus 94 ~~ 95 (124)
T KOG0114|consen 94 PE 95 (124)
T ss_pred HH
Confidence 54
No 32
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.02 E-value=1.5e-09 Score=107.72 Aligned_cols=79 Identities=20% Similarity=0.316 Sum_probs=70.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHH-hcCCCeeEeEEEEeC-cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecc
Q 012554 289 EGPSIYLKGLPPSATHALLENEF-RKFGTIRAGGIQVKT-QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKK 365 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F-~~~G~i~~~~v~~~~-~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~ 365 (461)
..+.+||.|||+++.|++|+++| ++.|+|.+|.+..+. .|.++||.|||++++.+++|++.+ .+.++||.|.|.+..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 35669999999999999999999 568999998887774 458999999999999999999999 999999999999876
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
..
T Consensus 123 d~ 124 (608)
T KOG4212|consen 123 DE 124 (608)
T ss_pred ch
Confidence 54
No 33
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.01 E-value=1.5e-09 Score=115.87 Aligned_cols=80 Identities=16% Similarity=0.235 Sum_probs=71.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
....+|||+|||+.+|+++|+++|+.||.|..+.|..+. .+++|||||+|.+.++|..||+.+ +..|+|+.|+|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 356899999999999999999999999999987765543 337899999999999999999998 99999999999998
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
...
T Consensus 373 ~~~ 375 (509)
T TIGR01642 373 CVG 375 (509)
T ss_pred ccC
Confidence 654
No 34
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.00 E-value=9.5e-10 Score=92.98 Aligned_cols=80 Identities=24% Similarity=0.345 Sum_probs=73.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcC--CccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQK--GFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k--~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
.++..|||.++..++|+++|.+.|..||+|+.+++.++... .+||+.|+|++.+.|++||..+ +..|.|..|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 56899999999999999999999999999999887777655 7899999999999999999999 89999999999998
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
-.+
T Consensus 150 Fv~ 152 (170)
T KOG0130|consen 150 FVK 152 (170)
T ss_pred Eec
Confidence 765
No 35
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.00 E-value=3.6e-10 Score=105.64 Aligned_cols=80 Identities=31% Similarity=0.502 Sum_probs=75.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
+++|.|||=.||.+..+.+|.++|-.||.|.+.+|.+++ +.+|||+||.|+++.++++||.++ ++.|+-++|+|..+
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLK 362 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 362 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhc
Confidence 689999999999999999999999999999988777764 449999999999999999999999 99999999999999
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
|++
T Consensus 363 RPk 365 (371)
T KOG0146|consen 363 RPK 365 (371)
T ss_pred Ccc
Confidence 987
No 36
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.99 E-value=1.4e-09 Score=117.42 Aligned_cols=77 Identities=21% Similarity=0.410 Sum_probs=67.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecccc
Q 012554 291 PSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKST 367 (461)
Q Consensus 291 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~~ 367 (461)
.+|||+|||.++|+++|+++|++||.|..|.|..+. .+++|||||+|.+.++|++||+.+ ...|+|+.|+|.|....
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 379999999999999999999999999997765553 347899999999999999999998 77799999999987543
No 37
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.98 E-value=1.6e-09 Score=115.33 Aligned_cols=75 Identities=19% Similarity=0.231 Sum_probs=64.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC-cCCccEEEEEEccHHHHHHHHHhC-CCccc-CceeEEee
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT-QKGFCFGFVEFEEENAVQSAIEAS-PIVIS-GHRVVVEP 363 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~-~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~-g~~i~V~~ 363 (461)
.+++|||+|||+++++++|+++|++||.|..+.|..+. .++++||||+|.+.++|++||+.+ +..|. ++.|.|..
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 46899999999999999999999999999998776653 238999999999999999999998 77774 66665543
No 38
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.97 E-value=2.2e-09 Score=113.03 Aligned_cols=77 Identities=21% Similarity=0.365 Sum_probs=69.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc--CCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeeccc
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ--KGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKS 366 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~--k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~ 366 (461)
..+|||+||+..+|+++|+++|++||.|..|.|..+.. +++|||||+|.+.++|.+||..+ +..|.|+.|+|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 68999999999999999999999999999976655433 37899999999999999999998 9999999999999764
No 39
>smart00360 RRM RNA recognition motif.
Probab=98.96 E-value=3.4e-09 Score=80.01 Aligned_cols=68 Identities=34% Similarity=0.500 Sum_probs=59.0
Q ss_pred EcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEe
Q 012554 295 LKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVE 362 (461)
Q Consensus 295 V~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~ 362 (461)
|+|||..+++++|+++|.+||.|..+.+.... .+.+++|||+|.+.++|..|+..+ +..++|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999987665442 236889999999999999999998 788999998874
No 40
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.95 E-value=2.5e-09 Score=113.24 Aligned_cols=74 Identities=24% Similarity=0.398 Sum_probs=65.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC---CCcccCceeEEeeccc
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS---PIVISGHRVVVEPKKS 366 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~---~~~i~g~~i~V~~a~~ 366 (461)
++.|||+|||+++++++|+++|++||.|..|.|. +.++||||+|++.++|++||+.+ +..|+|+.|+|.++..
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~----~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMML----PGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEE----CCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 6789999999999999999999999999986443 24689999999999999999863 7889999999999865
Q ss_pred c
Q 012554 367 T 367 (461)
Q Consensus 367 ~ 367 (461)
+
T Consensus 78 ~ 78 (481)
T TIGR01649 78 Q 78 (481)
T ss_pred c
Confidence 4
No 41
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.94 E-value=6.1e-09 Score=79.41 Aligned_cols=72 Identities=33% Similarity=0.523 Sum_probs=62.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc-CCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEee
Q 012554 292 SIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ-KGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEP 363 (461)
Q Consensus 292 ~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~-k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~ 363 (461)
+|||+|||..+++++|+++|..||.|..+.+..... +.++++||+|.+.+++..|+..+ +..++|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999998865544322 25789999999999999999999 7779999998863
No 42
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.94 E-value=3.4e-09 Score=111.58 Aligned_cols=79 Identities=18% Similarity=0.294 Sum_probs=69.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhCCCcccCceeEEeecc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEPKK 365 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~a~ 365 (461)
.+.++|||+|||..+++++|+++|++||.|..|.|..+. .+++|||||+|.+.++|.+||...+..|.|+.|.|....
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~ 166 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQ 166 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecc
Confidence 457899999999999999999999999999997776543 237899999999999999999866999999999998765
Q ss_pred c
Q 012554 366 S 366 (461)
Q Consensus 366 ~ 366 (461)
.
T Consensus 167 ~ 167 (457)
T TIGR01622 167 A 167 (457)
T ss_pred h
Confidence 4
No 43
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=6.2e-10 Score=101.35 Aligned_cols=80 Identities=31% Similarity=0.485 Sum_probs=73.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEe--CcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVK--TQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~--~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
.+.++|||++|..++++.-|...|-.||.|+.+.|.++ +.|.++|+||+|+..++|.+||..| ..+|.||.|+|..+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 34689999999999999999999999999999777666 4458999999999999999999999 99999999999999
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
+|.
T Consensus 88 kP~ 90 (298)
T KOG0111|consen 88 KPE 90 (298)
T ss_pred CCc
Confidence 986
No 44
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.93 E-value=4.3e-09 Score=101.08 Aligned_cols=76 Identities=28% Similarity=0.448 Sum_probs=69.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecc
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKK 365 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~ 365 (461)
.++|||+||++++|+++|+++|.+||.|..+.|..+. .+.+|||||+|.+.+++..|+..+ +..|.|+.|.|....
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 6999999999999999999999999999887776654 348999999999999999999999 799999999999965
No 45
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.92 E-value=1.2e-09 Score=103.54 Aligned_cols=71 Identities=28% Similarity=0.465 Sum_probs=66.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecccc
Q 012554 291 PSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKST 367 (461)
Q Consensus 291 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~~ 367 (461)
.+|||+|||.++++.+|+.+|++||+|..|+| -|.||||..++...+..||..| +.+|+|..|+|+.++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDI------vKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDI------VKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeee------ecccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999888 3459999999999999999988 99999999999988776
No 46
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.91 E-value=5.1e-09 Score=110.94 Aligned_cols=77 Identities=18% Similarity=0.230 Sum_probs=68.4
Q ss_pred CCCCEEEEcCCCC-CCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecc
Q 012554 288 AEGPSIYLKGLPP-SATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKK 365 (461)
Q Consensus 288 ~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~ 365 (461)
.+++.|||+||++ .+|+++|+++|+.||.|..+.|.. + .+|||||+|.+.++|..||..| +..|.|+.|+|.+++
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~--~-~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~ 349 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMK--N-KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSK 349 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEe--C-CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 4578999999998 699999999999999999865543 2 4689999999999999999988 999999999999886
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
..
T Consensus 350 ~~ 351 (481)
T TIGR01649 350 QQ 351 (481)
T ss_pred cc
Confidence 64
No 47
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.89 E-value=1.8e-09 Score=107.21 Aligned_cols=80 Identities=21% Similarity=0.290 Sum_probs=71.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcC-CccEEEEEEccHHHHHHHHHhC--CCcccCc--eeEEe
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQK-GFCFGFVEFEEENAVQSAIEAS--PIVISGH--RVVVE 362 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k-~~g~aFVeF~~~~~a~~Al~~~--~~~i~g~--~i~V~ 362 (461)
.+.++|||+-|+..+||.+++++|++||.|++|.|..+.++ +|||+||.|.+.+-|..||+.+ -.++.|. .|.|+
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 45789999999999999999999999999999888777666 9999999999999999999999 4456554 69999
Q ss_pred ecccc
Q 012554 363 PKKST 367 (461)
Q Consensus 363 ~a~~~ 367 (461)
++.++
T Consensus 202 FADtq 206 (510)
T KOG0144|consen 202 FADTQ 206 (510)
T ss_pred ecccC
Confidence 99887
No 48
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.82 E-value=2.4e-08 Score=93.28 Aligned_cols=81 Identities=16% Similarity=0.315 Sum_probs=72.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcC--CccEEEEEEccHHHHHHHHHhC-CCcccCceeEEee
Q 012554 287 EAEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQK--GFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEP 363 (461)
Q Consensus 287 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k--~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~ 363 (461)
+.....|.|.-||..+|+++||.+|...|+|++|++..+.-. +-||+||-|-++.+|++||..+ +..|..+.|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 355678999999999999999999999999999877555332 7899999999999999999999 9999999999999
Q ss_pred cccc
Q 012554 364 KKST 367 (461)
Q Consensus 364 a~~~ 367 (461)
+|+.
T Consensus 118 ARPS 121 (360)
T KOG0145|consen 118 ARPS 121 (360)
T ss_pred ccCC
Confidence 9986
No 49
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.79 E-value=1.4e-08 Score=103.42 Aligned_cols=80 Identities=26% Similarity=0.449 Sum_probs=70.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcC--CccEEEEEEccHHHHHHHHHhC------C-CcccCce
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQK--GFCFGFVEFEEENAVQSAIEAS------P-IVISGHR 358 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k--~~g~aFVeF~~~~~a~~Al~~~------~-~~i~g~~ 358 (461)
..+.+|||+|||+++|+++|.++|++||.|+++.|.++... ++|.|||.|.+...++.||+.. + +.|+||.
T Consensus 290 ~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~ 369 (678)
T KOG0127|consen 290 TEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRL 369 (678)
T ss_pred cccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccE
Confidence 45799999999999999999999999999999877766443 8999999999999999999875 2 6789999
Q ss_pred eEEeecccc
Q 012554 359 VVVEPKKST 367 (461)
Q Consensus 359 i~V~~a~~~ 367 (461)
|+|..+-++
T Consensus 370 Lkv~~Av~R 378 (678)
T KOG0127|consen 370 LKVTLAVTR 378 (678)
T ss_pred Eeeeeccch
Confidence 999987765
No 50
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.78 E-value=4.3e-09 Score=102.30 Aligned_cols=75 Identities=24% Similarity=0.339 Sum_probs=68.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEe--CcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEee
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVK--TQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEP 363 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~--~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~ 363 (461)
-.|++||+.+.+++.++.||..|..||.|+++.+.++ +.+.++|+||+|+-++.++-|++.+ +.+++||.|+|..
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 3689999999999999999999999999999766665 3458999999999999999999999 9999999999973
No 51
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.75 E-value=3.6e-08 Score=72.57 Aligned_cols=55 Identities=31% Similarity=0.398 Sum_probs=46.5
Q ss_pred HHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 307 LENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 307 L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
|+++|++||.|..+ .+..++ ++++||+|.+.++|+.|++.+ +..++|+.|+|+++
T Consensus 1 L~~~f~~fG~V~~i--~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKI--KIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEE--EEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEE--EEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999884 444333 589999999999999999988 99999999999874
No 52
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.75 E-value=3.2e-08 Score=98.89 Aligned_cols=77 Identities=21% Similarity=0.257 Sum_probs=67.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc--CCccEEEEEEccHHHHHHHHHhC-CCccc-CceeEEeec
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ--KGFCFGFVEFEEENAVQSAIEAS-PIVIS-GHRVVVEPK 364 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~--k~~g~aFVeF~~~~~a~~Al~~~-~~~i~-g~~i~V~~a 364 (461)
.++-|||+.||.++.|++|..+|++.|+|-.+.|.++.. .++|||||+|.+.+.|++||+.+ +++|. |+.|.|...
T Consensus 82 ~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~S 161 (506)
T KOG0117|consen 82 RGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVS 161 (506)
T ss_pred CCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEe
Confidence 489999999999999999999999999999866665532 38999999999999999999999 88886 888877754
Q ss_pred c
Q 012554 365 K 365 (461)
Q Consensus 365 ~ 365 (461)
.
T Consensus 162 v 162 (506)
T KOG0117|consen 162 V 162 (506)
T ss_pred e
Confidence 3
No 53
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.74 E-value=1.7e-09 Score=95.95 Aligned_cols=78 Identities=24% Similarity=0.364 Sum_probs=68.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEe--CcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVK--TQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~--~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
.++.-|||+|||++.|+.||-..|++||.|..+.+..+ +.+++||||+.|++..+---|+..+ ++.|.||.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 67889999999999999999999999999998655444 2338999999999999888888888 99999999999864
Q ss_pred c
Q 012554 365 K 365 (461)
Q Consensus 365 ~ 365 (461)
.
T Consensus 113 ~ 113 (219)
T KOG0126|consen 113 S 113 (219)
T ss_pred c
Confidence 3
No 54
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.73 E-value=2.4e-08 Score=101.87 Aligned_cols=78 Identities=26% Similarity=0.313 Sum_probs=69.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcC-CccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecccc
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQK-GFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKST 367 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k-~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~~ 367 (461)
--+|+|+||||.+.+.+|+.+|++||.|..+.|....+. ..|||||.|.+..+|..||+.+ +.+|+||.|-|.|+-++
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 569999999999999999999999999998555433222 5699999999999999999999 99999999999999887
No 55
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.73 E-value=1.4e-08 Score=90.27 Aligned_cols=78 Identities=24% Similarity=0.353 Sum_probs=68.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEe--CcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVK--TQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~--~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
....+|||+||+..++++.|.++|-+.|.|..+.|..+ +++.+|||||+|.++++++-|++.+ .+.|-|+.|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 34789999999999999999999999999988555433 2237899999999999999999999 88899999999988
Q ss_pred c
Q 012554 365 K 365 (461)
Q Consensus 365 ~ 365 (461)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 7
No 56
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.73 E-value=5.3e-08 Score=96.01 Aligned_cols=79 Identities=25% Similarity=0.418 Sum_probs=72.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcC--CccEEEEEEccHHHHHHHHHhCCCcccCceeEEeeccc
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQK--GFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEPKKS 366 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k--~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~a~~ 366 (461)
...+|||++|+.++++.+|++.|.+||.|..+.+.++..+ .++|+||.|.+++++++++...-+.|+++.+.|..+.+
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccc
Confidence 4679999999999999999999999999988777776554 88999999999999999998889999999999999999
Q ss_pred c
Q 012554 367 T 367 (461)
Q Consensus 367 ~ 367 (461)
+
T Consensus 176 k 176 (311)
T KOG4205|consen 176 K 176 (311)
T ss_pred h
Confidence 8
No 57
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.73 E-value=2.6e-08 Score=102.33 Aligned_cols=77 Identities=21% Similarity=0.349 Sum_probs=70.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc--CCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecccc
Q 012554 291 PSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ--KGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKST 367 (461)
Q Consensus 291 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~--k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~~ 367 (461)
+.+||||+|+++++++|..+|+..|.|..+.+..+.. +.+||+|++|.+.+.+..|++.+ +.+++|++|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 8999999999999999999999999999977666643 48999999999999999999999 99999999999998765
No 58
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=2.2e-08 Score=94.09 Aligned_cols=78 Identities=17% Similarity=0.305 Sum_probs=72.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeeccc
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKS 366 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~ 366 (461)
...+||+.|..+++-++||+.|.+||+|.+++|..+. .|+|||+||-|-..++|+.||..| +..|++|.|+-.|+..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 6789999999999999999999999999999887774 459999999999999999999999 9999999999999876
Q ss_pred c
Q 012554 367 T 367 (461)
Q Consensus 367 ~ 367 (461)
|
T Consensus 142 K 142 (321)
T KOG0148|consen 142 K 142 (321)
T ss_pred C
Confidence 5
No 59
>smart00361 RRM_1 RNA recognition motif.
Probab=98.68 E-value=7e-08 Score=74.54 Aligned_cols=59 Identities=22% Similarity=0.268 Sum_probs=50.3
Q ss_pred HHHHHHHHh----cCCCeeEeE-EEEeC----cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEe
Q 012554 304 HALLENEFR----KFGTIRAGG-IQVKT----QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVE 362 (461)
Q Consensus 304 e~~L~~~F~----~~G~i~~~~-v~~~~----~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~ 362 (461)
+++|+++|+ +||.|..+. |.++. .+++||+||+|.+.++|.+|+..+ +..++|+.|++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578889998 999999874 55543 347999999999999999999999 999999999863
No 60
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=3e-08 Score=96.26 Aligned_cols=78 Identities=23% Similarity=0.392 Sum_probs=70.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcC--CccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecc
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQK--GFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKK 365 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k--~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~ 365 (461)
+.+-|||.-|+.-+|+++|+-+|+.||.|..|.|..+... +-+||||+|++.+++++|.-+| +..|++++|+|.+..
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 3678999999999999999999999999999988655433 7789999999999999999999 999999999999865
Q ss_pred c
Q 012554 366 S 366 (461)
Q Consensus 366 ~ 366 (461)
+
T Consensus 318 S 318 (479)
T KOG0415|consen 318 S 318 (479)
T ss_pred h
Confidence 4
No 61
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.65 E-value=1.6e-07 Score=100.32 Aligned_cols=73 Identities=19% Similarity=0.365 Sum_probs=59.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcC------------CCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhCCCccc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKF------------GTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEASPIVIS 355 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~------------G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~~~~i~ 355 (461)
...++|||+|||+++|+++|+++|.+| +.|.. +...+.++||||+|.+.++|..||...++.|.
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~----~~~~~~kg~afVeF~~~e~A~~Al~l~g~~~~ 248 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSS----VNINKEKNFAFLEFRTVEEATFAMALDSIIYS 248 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEE----EEECCCCCEEEEEeCCHHHHhhhhcCCCeEee
Confidence 457899999999999999999999875 22322 22344678999999999999999964499999
Q ss_pred CceeEEeec
Q 012554 356 GHRVVVEPK 364 (461)
Q Consensus 356 g~~i~V~~a 364 (461)
|+.|+|...
T Consensus 249 g~~l~v~r~ 257 (509)
T TIGR01642 249 NVFLKIRRP 257 (509)
T ss_pred CceeEecCc
Confidence 999998643
No 62
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.60 E-value=1e-07 Score=92.63 Aligned_cols=76 Identities=25% Similarity=0.392 Sum_probs=66.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC--CCcccCceeEEeecc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS--PIVISGHRVVVEPKK 365 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~--~~~i~g~~i~V~~a~ 365 (461)
....+|||++|...+++.+|+++|-+||.|+.+.|.. .+++|||+|.+..+|+.|.++. ...|+|++|+|.|.+
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~----~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP----RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec----ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 4578999999999999999999999999999854432 3458999999999999999887 677899999999988
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
+.
T Consensus 302 ~~ 303 (377)
T KOG0153|consen 302 PK 303 (377)
T ss_pred Cc
Confidence 73
No 63
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=1.2e-07 Score=96.35 Aligned_cols=75 Identities=24% Similarity=0.436 Sum_probs=69.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecccc
Q 012554 292 SIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKST 367 (461)
Q Consensus 292 ~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~~ 367 (461)
.|||+||+.+++..+|.++|+.||.|.+|.|..+.+.++|| ||+|+++++|++||..+ +..+.++.|.|.....+
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERK 153 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccch
Confidence 39999999999999999999999999999888877779999 99999999999999999 89999999999877665
No 64
>cd00531 NTF2_like Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea
Probab=98.59 E-value=1.2e-06 Score=73.39 Aligned_cols=115 Identities=25% Similarity=0.356 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCCC--CcceEEEEEeeeeeeCC-CcEE
Q 012554 16 NAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALHY--GEFSAEITTVDAQESYN-GGVI 91 (461)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~~--~~~~~~I~~~d~q~s~~-~~il 91 (461)
..|+.+||..|+ .+++.|..||.+++.+.+.+.+.......|.++|.+++..+.. ....+.+.+++++...+ ...+
T Consensus 2 ~~l~~~y~~~ld~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~ 81 (124)
T cd00531 2 EQFLYRYARLLDAGDREWLALLYADDAYFEPPGGDGLIYPDDGREAIEDRVRRLPFGPSRTRHLVSNVDVQPGDDGEGVV 81 (124)
T ss_pred HHHHHHHHHHhCCchHHHHHhhCcCcEEEEEccCCEEEEcCChHHHHHHHHHhcCCCCCceEEEEEeEEEEeCCCCEEEE
Confidence 579999999999 8899999999999999887632112366899999999998863 33455578889888654 3466
Q ss_pred EEEEEEEEcCC---CCcceeEEEEEEEEeCCeEEEEcceEEe
Q 012554 92 VLVTGYLTGKD---SVRRKFSQSFFLAPQDKGYFVLNDVFRY 130 (461)
Q Consensus 92 v~V~G~~~~~~---~~~~~F~q~F~L~~~~~~y~v~nd~fr~ 130 (461)
+.+.+.+.... ...+.|.++|.+...++.|.|.+.+++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~w~i~~~~~~~ 123 (124)
T cd00531 82 VSVFGVLRTRGDGEQDVFAGGQTFVLRPQGGGGKIANRRFRL 123 (124)
T ss_pred EEEEEEEEEccCCceeEEEEEEEEEEEEeCCEEEEEEEEEec
Confidence 77777777665 4558899999999999999999999986
No 65
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.59 E-value=1.4e-07 Score=87.02 Aligned_cols=77 Identities=26% Similarity=0.314 Sum_probs=69.0
Q ss_pred CCEEEEcCCCCCCCHHHHHH----HHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 290 GPSIYLKGLPPSATHALLEN----EFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~----~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
..+|||.||+..+..++|+. +|++||.|.++ +.+.+.|.+|-|||.|.+.+.|-.|+..+ +.-+-|+.++|.++
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI-~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDI-SAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEE-EecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 44999999999999999888 99999999874 33446668999999999999999999999 99999999999999
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
+.+
T Consensus 88 ~s~ 90 (221)
T KOG4206|consen 88 KSD 90 (221)
T ss_pred cCc
Confidence 987
No 66
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.59 E-value=2.3e-07 Score=92.38 Aligned_cols=80 Identities=19% Similarity=0.318 Sum_probs=64.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcC--CccEEEEEEccHHHHHHHHHhC--CCcccC--ceeE
Q 012554 287 EAEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQK--GFCFGFVEFEEENAVQSAIEAS--PIVISG--HRVV 360 (461)
Q Consensus 287 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k--~~g~aFVeF~~~~~a~~Al~~~--~~~i~g--~~i~ 360 (461)
+.+.-+|||+-||..++|.|||.+|++||.|..|.|..+... ++|||||.|.+.+++.+|+.++ -++|-| +.|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 366889999999999999999999999999998655443222 8999999999999999999998 445554 4566
Q ss_pred Eeeccc
Q 012554 361 VEPKKS 366 (461)
Q Consensus 361 V~~a~~ 366 (461)
|+++..
T Consensus 111 vk~Ad~ 116 (510)
T KOG0144|consen 111 VKYADG 116 (510)
T ss_pred ecccch
Confidence 666544
No 67
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.58 E-value=5.4e-08 Score=99.72 Aligned_cols=79 Identities=22% Similarity=0.348 Sum_probs=70.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEe--CcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecc
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVK--TQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKK 365 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~--~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~ 365 (461)
+..+|||+||.+++++++|+.+|+.||.|..+.+.++ ++.++||+||+|.+.+++++|++.+ +++|-|+.|+|....
T Consensus 277 p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 277 PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred chhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 3445999999999999999999999999999877777 4458999999999999999999999 999999999998766
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
.+
T Consensus 357 ~r 358 (549)
T KOG0147|consen 357 ER 358 (549)
T ss_pred ee
Confidence 54
No 68
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.57 E-value=4.4e-08 Score=96.60 Aligned_cols=79 Identities=23% Similarity=0.380 Sum_probs=70.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc--CCccEEEEEEccHHHHHHHHHhCCCcccCceeEEeeccc
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ--KGFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEPKKS 366 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~--k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~a~~ 366 (461)
+.++|||++|+|+++++.|++.|.+||+|..|.|..+.. ++++|+||+|++.+.+.++|....+.|+|+.|.+..+-+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 689999999999999999999999999999987655533 288999999999999999998889999999999988877
Q ss_pred c
Q 012554 367 T 367 (461)
Q Consensus 367 ~ 367 (461)
+
T Consensus 85 r 85 (311)
T KOG4205|consen 85 R 85 (311)
T ss_pred c
Confidence 6
No 69
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.53 E-value=1.6e-07 Score=93.54 Aligned_cols=73 Identities=21% Similarity=0.295 Sum_probs=65.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEee
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEP 363 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~ 363 (461)
...|+|||+|||+++||+.|++-|..||.|+..+| +.+.+.++ .|.|.++++|+.|+..+ +..|+||.|+|.+
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadi-me~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADI-MENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhh-hccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 56899999999999999999999999999998776 44444555 89999999999999999 9999999999975
No 70
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.51 E-value=4.5e-07 Score=84.89 Aligned_cols=79 Identities=24% Similarity=0.321 Sum_probs=71.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEe--CcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVK--TQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~--~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
..+..|||=||..+++|.-|-++|..||.|..++|..+ +++++||+||...+-++|..||..+ +..+++|.|.|.++
T Consensus 276 ~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 276 GGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred CCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 34789999999999999999999999999999877665 3569999999999999999999999 99999999999987
Q ss_pred cc
Q 012554 365 KS 366 (461)
Q Consensus 365 ~~ 366 (461)
..
T Consensus 356 tn 357 (360)
T KOG0145|consen 356 TN 357 (360)
T ss_pred cC
Confidence 54
No 71
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.49 E-value=2.7e-07 Score=97.19 Aligned_cols=76 Identities=30% Similarity=0.463 Sum_probs=67.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcC-----CccEEEEEEccHHHHHHHHHhC-CCcccCceeEEee
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQK-----GFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEP 363 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k-----~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~ 363 (461)
.++|||.||++++|.++|+.+|...|.|..+.|....+. +.|||||+|.+.++|++|++.| +..|+|+.|.|..
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 344999999999999999999999999999766554332 5699999999999999999999 8999999999998
Q ss_pred cc
Q 012554 364 KK 365 (461)
Q Consensus 364 a~ 365 (461)
+.
T Consensus 595 S~ 596 (725)
T KOG0110|consen 595 SE 596 (725)
T ss_pred cc
Confidence 87
No 72
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.49 E-value=9.7e-08 Score=100.40 Aligned_cols=80 Identities=29% Similarity=0.450 Sum_probs=72.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcC--CccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQK--GFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k--~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
..+++|+|+|||+..+..+++.+|..||.|+.|.|....++ ++|||||+|-++.++.+|+.++ ...|-||+|.++|+
T Consensus 611 k~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA 690 (725)
T KOG0110|consen 611 KKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWA 690 (725)
T ss_pred cccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehh
Confidence 34789999999999999999999999999999877666444 6999999999999999999999 78889999999999
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
...
T Consensus 691 ~~d 693 (725)
T KOG0110|consen 691 KSD 693 (725)
T ss_pred ccc
Confidence 865
No 73
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.48 E-value=7e-07 Score=91.47 Aligned_cols=80 Identities=23% Similarity=0.461 Sum_probs=71.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcC--CccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQK--GFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k--~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
.-++.|||.+|...+...+|+.+|++||+|.-..|+..... .+||+||++.+.+.|.++|+.| ...|.|+.|.|+.+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 56789999999998889999999999999988766655443 6899999999999999999999 88999999999988
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
+..
T Consensus 483 KNE 485 (940)
T KOG4661|consen 483 KNE 485 (940)
T ss_pred ccC
Confidence 764
No 74
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.43 E-value=2.4e-07 Score=88.04 Aligned_cols=75 Identities=21% Similarity=0.364 Sum_probs=68.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecc
Q 012554 287 EAEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKK 365 (461)
Q Consensus 287 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~ 365 (461)
.....+|+|+||.+.++.++|+..|.+||.+..|+| -++|+||.|+-.+++..|+..+ +.++.|++++|....
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdi------vkdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~st 148 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDI------VKDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLST 148 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeee------ecceeEEEEeeccchHHHHhcccccccccceeeeeeec
Confidence 345789999999999999999999999999988877 3569999999999999999999 999999999999987
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
.+
T Consensus 149 sr 150 (346)
T KOG0109|consen 149 SR 150 (346)
T ss_pred cc
Confidence 76
No 75
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.42 E-value=5.1e-07 Score=95.74 Aligned_cols=75 Identities=15% Similarity=0.280 Sum_probs=67.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecccc
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKST 367 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~~ 367 (461)
-+++||||+|+..+++.+|+.+|+.||.|.++ .+. ..++||||......+|.+||.+| .+.+.++.|+|.|+..+
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi--~li--~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSI--ILI--PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeE--eec--cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 35799999999999999999999999999984 332 25789999999999999999999 99999999999998765
No 76
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.37 E-value=3.8e-07 Score=85.70 Aligned_cols=80 Identities=19% Similarity=0.283 Sum_probs=67.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcC-CccEEEEEEccHHHHHHHHHhC-C-CcccC--ceeEEe
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQK-GFCFGFVEFEEENAVQSAIEAS-P-IVISG--HRVVVE 362 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k-~~g~aFVeF~~~~~a~~Al~~~-~-~~i~g--~~i~V~ 362 (461)
.+.++|||+-|...-.|+|++.+|..||.|..|.|..-.+. +|||+||.|.+..+++.||..+ + .++-| ..|.|+
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 36789999999999999999999999999999866444443 8999999999999999999998 3 34444 468888
Q ss_pred ecccc
Q 012554 363 PKKST 367 (461)
Q Consensus 363 ~a~~~ 367 (461)
++...
T Consensus 97 ~ADTd 101 (371)
T KOG0146|consen 97 FADTD 101 (371)
T ss_pred eccch
Confidence 88765
No 77
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.36 E-value=6.1e-06 Score=75.89 Aligned_cols=80 Identities=19% Similarity=0.305 Sum_probs=66.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc--C-CccEEEEEEccHHHHHHHHHhC-CCccc---CceeE
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ--K-GFCFGFVEFEEENAVQSAIEAS-PIVIS---GHRVV 360 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~--k-~~g~aFVeF~~~~~a~~Al~~~-~~~i~---g~~i~ 360 (461)
...++|||.+||.++...+|..+|..|---+.+.|+.... + .+-+|||+|.+...|.+|++.+ |+.|+ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 3478999999999999999999999987666654443321 1 4579999999999999999999 88887 77899
Q ss_pred Eeecccc
Q 012554 361 VEPKKST 367 (461)
Q Consensus 361 V~~a~~~ 367 (461)
|+.++.+
T Consensus 112 iElAKSN 118 (284)
T KOG1457|consen 112 IELAKSN 118 (284)
T ss_pred eeehhcC
Confidence 9999987
No 78
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.34 E-value=9.4e-07 Score=86.27 Aligned_cols=80 Identities=18% Similarity=0.289 Sum_probs=70.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc--CCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ--KGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~--k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
...++|||..+..+.+++||+..|+.||+|+.|.+..... +.+||+|++|.+..+...||..+ -++|+|..|+|-..
T Consensus 208 k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 208 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 4578999999999999999999999999999987755432 28999999999999999999999 78899999999876
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
-..
T Consensus 288 vTP 290 (544)
T KOG0124|consen 288 VTP 290 (544)
T ss_pred cCC
Confidence 543
No 79
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.33 E-value=6.5e-07 Score=83.37 Aligned_cols=71 Identities=31% Similarity=0.543 Sum_probs=63.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecccc
Q 012554 291 PSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKST 367 (461)
Q Consensus 291 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~~ 367 (461)
..+||++|++.+.+.+|+.||..||.|..+.+ ..+|+||+|++..+|..|+..+ +.+|++..+.|++++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m------k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM------KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee------ecccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 47999999999999999999999999987544 4578999999999999999999 88899888999998865
No 80
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.27 E-value=8.9e-06 Score=77.42 Aligned_cols=78 Identities=17% Similarity=0.302 Sum_probs=67.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcC-CccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecccc
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQK-GFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKST 367 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k-~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~~ 367 (461)
..+|+|.||++.++++||+++|..||.++.+.|..+... +.|.|-|.|...++|.+|++.+ ++.++|+.+++....+.
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 488999999999999999999999998888555444332 7789999999999999999999 99999999999887665
No 81
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.27 E-value=1.3e-06 Score=78.09 Aligned_cols=80 Identities=20% Similarity=0.345 Sum_probs=67.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEe-EEEEeCc--CCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEee
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAG-GIQVKTQ--KGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEP 363 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~-~v~~~~~--k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~ 363 (461)
.-+..|||+||..++++..|.+.|+.||.|... .|..+.+ ++++|+||-|++.+.+.+||..+ +..++.++|+|..
T Consensus 94 ~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~y 173 (203)
T KOG0131|consen 94 DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSY 173 (203)
T ss_pred cccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEE
Confidence 346899999999999999999999999988541 1222223 47899999999999999999999 8899999999999
Q ss_pred cccc
Q 012554 364 KKST 367 (461)
Q Consensus 364 a~~~ 367 (461)
+..+
T Consensus 174 a~k~ 177 (203)
T KOG0131|consen 174 AFKK 177 (203)
T ss_pred EEec
Confidence 8765
No 82
>PF10429 Mtr2: Nuclear pore RNA shuttling protein Mtr2; InterPro: IPR019488 Mtr2 is a monomeric, dual-action, RNA-shuttle protein found in yeasts. Transport across the nuclear-cytoplasmic membrane is via the macro-molecular membrane-spanning nuclear pore complex, NPC. The pore is lined by a subset of NPC members called nucleoporins that present FG (Phe-Gly) receptors, characteristically GLFG and FXFG motifs, for shuttling RNAs and proteins. RNA cargo is bound to soluble transport proteins (nuclear export factors) such as Mex67 in yeasts, and TAP in metazoa, which pass along the pore by binding to successive FG receptors. Mtr2 when bound to Mex67 maximises this FG-binding. Mtr2 also acts independently of Mex67 in transporting the large ribosomal RNA subunit through the pore []. ; PDB: 1Q40_A 1Q42_A 1OF5_B.
Probab=98.17 E-value=3.6e-06 Score=74.16 Aligned_cols=98 Identities=15% Similarity=0.123 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHc-----cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCC-CCcceEEEEEeeeeeeC
Q 012554 13 IVANAFVHQYYLILH-----QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALH-YGEFSAEITTVDAQESY 86 (461)
Q Consensus 13 ~vg~~Fv~~YY~~l~-----~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~-~~~~~~~I~~~d~q~s~ 86 (461)
++..-||+.||..|+ +-...|..||..+|.++|+|. .+.+..+..+++.+++ .+ +|.+.++||+.+.
T Consensus 5 q~~E~FvKk~la~LD~~~~~~l~~~l~~F~~~~~~II~Ng~-----Pi~~~~~F~~~w~~~pv~T--qH~L~s~D~H~IP 77 (166)
T PF10429_consen 5 QIIETFVKKILAHLDEQDPPNLNSFLTQFLPPNCKIIWNGT-----PIAQPTAFQQTWQQQPVQT--QHQLTSFDCHVIP 77 (166)
T ss_dssp CCHHHHHHHHHHHHCT-SS--HHHHHTTCECCEEEEEETTE-----EES-HHHHHHHHHCCS--E--EEEEEEEEEEEET
T ss_pred hhHHHHHHHHHHHhcCcchHHHHHHhHhhcCCCcEEEECCc-----cCCCHHHHHHHHHhCccce--eeeeeeeeeeEeC
Confidence 456789999999999 445678889999999999986 8888899999999998 55 9999999999998
Q ss_pred C-CcEEEEEEEEEEcCCCCcceeEEEEEEEEe
Q 012554 87 N-GGVIVLVTGYLTGKDSVRRKFSQSFFLAPQ 117 (461)
Q Consensus 87 ~-~~ilv~V~G~~~~~~~~~~~F~q~F~L~~~ 117 (461)
+ +.+++.|++.|..++.-+-|--|...|...
T Consensus 78 Gsgt~i~N~n~KVRFDEsGrdk~G~~a~l~~~ 109 (166)
T PF10429_consen 78 GSGTFIINVNCKVRFDESGRDKLGEDADLPQP 109 (166)
T ss_dssp TTTEEEEEEEEEEEEB-SSB-TTS-B--TTS-
T ss_pred CCCeEEEeeeEEEEecCCCCCCCCCceeeccc
Confidence 5 568899999999977666666777776553
No 83
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.13 E-value=5.5e-06 Score=78.88 Aligned_cols=80 Identities=21% Similarity=0.300 Sum_probs=70.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcC--CccEEEEEEccHHHHHHHHHhCCCcccCceeEEeecc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQK--GFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEPKK 365 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k--~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~a~ 365 (461)
.+...+||+|+.+.+|.+++...|+.||.|..+.|..+... .++|+||+|.+.+.++.+|...+..|.++.|.|.+++
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLKR 178 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeeee
Confidence 55789999999999999999999999999987666665443 7899999999999999999944999999999999998
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
.+
T Consensus 179 ~~ 180 (231)
T KOG4209|consen 179 TN 180 (231)
T ss_pred ee
Confidence 76
No 84
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.12 E-value=7.1e-06 Score=74.82 Aligned_cols=78 Identities=23% Similarity=0.367 Sum_probs=64.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcC-CCeeEeEEEEeCcC----CccEEEEEEccHHHHHHHHHhC-CCcccCceeEE
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKF-GTIRAGGIQVKTQK----GFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVV 361 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~-G~i~~~~v~~~~~k----~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V 361 (461)
....-+||..+|+...+.+|..+|.+| |.+.. +.+.+++ ++|||||+|++.+.|+-|-+.| +..|.++.|.|
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r--~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTR--FRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEE--EEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 456788999999999999999999998 66665 3342222 8999999999999999999999 88899999888
Q ss_pred eecccc
Q 012554 362 EPKKST 367 (461)
Q Consensus 362 ~~a~~~ 367 (461)
..-.+.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 876553
No 85
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.93 E-value=2.9e-05 Score=79.07 Aligned_cols=79 Identities=23% Similarity=0.263 Sum_probs=66.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhCCCcccCceeEEeecccc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEPKKST 367 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~a~~~ 367 (461)
.+..-|-+.+|||++|+++|.+||+.|+ |..+.+...+.|..|-|||+|.+.+++++||++....++.|-|.|..+...
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGA 86 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCc
Confidence 3456778889999999999999999985 777545444566789999999999999999999888889999999877543
No 86
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=2.9e-05 Score=79.23 Aligned_cols=73 Identities=18% Similarity=0.356 Sum_probs=65.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecccc
Q 012554 291 PSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKST 367 (461)
Q Consensus 291 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~~ 367 (461)
..|||+ .++|+.+|.++|+.+|.+..+.|..+. .+-|||||.|.++++|.+||..+ ...|.|+.|+|.|....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-TSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-CccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468998 899999999999999999998777777 48899999999999999999999 66689999999997654
No 87
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.89 E-value=3.8e-05 Score=74.99 Aligned_cols=80 Identities=21% Similarity=0.240 Sum_probs=66.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEe------EEEEeCc---CCccEEEEEEccHHHHHHHHHhC-CCcccCc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAG------GIQVKTQ---KGFCFGFVEFEEENAVQSAIEAS-PIVISGH 357 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~------~v~~~~~---k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~ 357 (461)
.....|||.|||.++|.+++.++|++||.|..- .|.+-.+ +.+|-|.+.|-..+++.-||+.| ...|.|+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 446789999999999999999999999988642 1222222 26788999999999999999999 9999999
Q ss_pred eeEEeecccc
Q 012554 358 RVVVEPKKST 367 (461)
Q Consensus 358 ~i~V~~a~~~ 367 (461)
.|+|+.++-.
T Consensus 212 ~~rVerAkfq 221 (382)
T KOG1548|consen 212 KLRVERAKFQ 221 (382)
T ss_pred EEEEehhhhh
Confidence 9999988754
No 88
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.86 E-value=0.00019 Score=73.24 Aligned_cols=77 Identities=21% Similarity=0.259 Sum_probs=61.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc---CCccEEEEEEccHHHHHHHHHhCCCcccCceeEEeeccc
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ---KGFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEPKKS 366 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~---k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~a~~ 366 (461)
...|-+++||+.||++||.+||+-.-.+ ...|.+..+ +..+-|||.|++.+.++.||......|+-|-|.|..+.-
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv-~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss~ 181 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIV-PDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSSR 181 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCccc-ccceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhHH
Confidence 5678899999999999999999876433 333433322 266789999999999999999988889999999987654
Q ss_pred c
Q 012554 367 T 367 (461)
Q Consensus 367 ~ 367 (461)
.
T Consensus 182 ~ 182 (510)
T KOG4211|consen 182 A 182 (510)
T ss_pred H
Confidence 3
No 89
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=97.80 E-value=7.8e-05 Score=72.72 Aligned_cols=12 Identities=42% Similarity=0.678 Sum_probs=4.8
Q ss_pred CCCCCCCCCCCC
Q 012554 428 GYQRNDNGGRVN 439 (461)
Q Consensus 428 g~~~~~~~grg~ 439 (461)
|..|++|+|||+
T Consensus 448 grgrgggggrg~ 459 (465)
T KOG3973|consen 448 GRGRGGGGGRGG 459 (465)
T ss_pred CCCCCCCCCCcc
Confidence 333333344444
No 90
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.75 E-value=9.3e-05 Score=78.25 Aligned_cols=80 Identities=20% Similarity=0.343 Sum_probs=69.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc-----CCccEEEEEEccHHHHHHHHHhC-CCcccCceeE
Q 012554 287 EAEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ-----KGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVV 360 (461)
Q Consensus 287 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~-----k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~ 360 (461)
++..+.|||+||+..++++.|-..|..||.|..+.|..-+. +.+.|+||-|-+..++++|++.+ ++.+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 46789999999999999999999999999999876654321 25678999999999999999999 9999999999
Q ss_pred Eeeccc
Q 012554 361 VEPKKS 366 (461)
Q Consensus 361 V~~a~~ 366 (461)
+-|.+.
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999854
No 91
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.68 E-value=0.0002 Score=70.65 Aligned_cols=80 Identities=21% Similarity=0.251 Sum_probs=66.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEe------EEEEeCc----CCccEEEEEEccHHHHHHHHHhC-CCcccC
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAG------GIQVKTQ----KGFCFGFVEFEEENAVQSAIEAS-PIVISG 356 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~------~v~~~~~----k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g 356 (461)
....+|||-+|+..+++++|.++|.++|.|+.- .|.+-++ +.|+-|.|.|++...++.||..+ +..+.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 557899999999999999999999999988641 1222222 27888999999999999999999 999999
Q ss_pred ceeEEeecccc
Q 012554 357 HRVVVEPKKST 367 (461)
Q Consensus 357 ~~i~V~~a~~~ 367 (461)
..|+|..+..+
T Consensus 144 n~ikvs~a~~r 154 (351)
T KOG1995|consen 144 NTIKVSLAERR 154 (351)
T ss_pred CCchhhhhhhc
Confidence 99999888765
No 92
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.59 E-value=3e-05 Score=71.27 Aligned_cols=77 Identities=18% Similarity=0.192 Sum_probs=64.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecc
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKK 365 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~ 365 (461)
...+|||.|+...++++.|.++|-+-|.|..+.|.-..+....||||+|+++-++.-|++.+ +..+-++.|.|....
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 36899999999999999999999999999875543333333349999999999999999998 999988888777544
No 93
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.58 E-value=0.00013 Score=71.19 Aligned_cols=74 Identities=16% Similarity=0.183 Sum_probs=57.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcC----CccEEEEEEccHHHHHHHHHhC-CCcccCceeEEee
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQK----GFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEP 363 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k----~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~ 363 (461)
.+.+||+||-|++|++||.+.+...|--...+|++..++ +||||.|...+..++++-++.+ ..+|.|..-.|-.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 578999999999999999888876654332223333332 8999999999999999999999 7789888765543
No 94
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.56 E-value=7.9e-05 Score=68.73 Aligned_cols=63 Identities=16% Similarity=0.399 Sum_probs=52.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcc
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVI 354 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i 354 (461)
..+|||.||..++|+++|+.+|+.|-.... ++++...+.+.+|++|++.+.+..|+..+ +..|
T Consensus 210 cstlfianl~~~~~ed~l~~~~~~~~gf~~--l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLLSRYPGFHI--LKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHHHhCCCceE--EEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 679999999999999999999999987765 44454447789999999999999998877 5544
No 95
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.54 E-value=0.00011 Score=75.99 Aligned_cols=70 Identities=26% Similarity=0.359 Sum_probs=60.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeE
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVV 360 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~ 360 (461)
....+|+|-|||..++.++|+.+|+.||+|+. |.... ..++..||+|-|...|++|++++ ...|.|++|+
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~--ir~t~-~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIRE--IRETP-NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhh--hhccc-ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 34689999999999999999999999999997 32211 25788999999999999999999 8899999887
No 96
>PF15008 DUF4518: Domain of unknown function (DUF4518)
Probab=97.52 E-value=0.00084 Score=64.52 Aligned_cols=125 Identities=17% Similarity=0.172 Sum_probs=91.3
Q ss_pred CCCHHHHHHHHHHHHHHHHcc--CchhhhccccCCce-eeccCCCCc-ccccccHHHHHHHHHhCCCCcceEE---EEE-
Q 012554 8 APTADIVANAFVHQYYLILHQ--SPQLVHRFYQDISK-LGRPEENGA-MSITTTMQAINDKILALHYGEFSAE---ITT- 79 (461)
Q Consensus 8 ~~~~~~vg~~Fv~~YY~~l~~--~p~~l~~fY~~~s~-l~~~~~~~~-~~~~~g~~~I~~~~~~l~~~~~~~~---I~~- 79 (461)
..+...+|.+|.+.||.+||. +-=..-.||.|.+. |.....++. ...+.|-+.+..+|.+|..+..-+- |.+
T Consensus 124 ~~~~~~L~~~F~~WFf~llNs~~~~wgpqhFW~Da~L~~~~~~~~~~~e~~~~Ga~~vs~~Llsl~~e~~l~fnPNl~~~ 203 (262)
T PF15008_consen 124 QYPIHLLAEEFCEWFFELLNSPQDDWGPQHFWPDAKLKLYYSTSEQNVEEYCEGAEEVSLRLLSLVKEERLFFNPNLDSD 203 (262)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccChhhccCCCeEEEEEEcCCCceeEEecCHHHHHHHHHHHhhcccEEECCCCCCC
Confidence 456799999999999999998 44455678887773 333322333 4445899999999999965533332 222
Q ss_pred -eeeeeeCCCcEEEEEEEEEEcCCCCcceeEEEEEEEEeC---CeEEEEcceEEeec
Q 012554 80 -VDAQESYNGGVIVLVTGYLTGKDSVRRKFSQSFFLAPQD---KGYFVLNDVFRYVD 132 (461)
Q Consensus 80 -~d~q~s~~~~ilv~V~G~~~~~~~~~~~F~q~F~L~~~~---~~y~v~nd~fr~~~ 132 (461)
+.+..+..|-|+|.|.|+|-..+.-.=.|=|.|=|...+ |.|-|.+=-++...
T Consensus 204 G~k~~~~phGlV~V~v~GTvH~~~~ClGiFEq~FGLiRdP~~~N~WKiK~~~l~i~~ 260 (262)
T PF15008_consen 204 GVKGRISPHGLVLVAVCGTVHRDNTCLGIFEQIFGLIRDPFAENNWKIKFVNLRIRG 260 (262)
T ss_pred CcceEEcCCCcEEEEEeeeEecCCceEeehhhhhhcccCccccCceeEEEEEEEEEe
Confidence 445567788899999999977666667899999999874 88998876666543
No 97
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.44 E-value=0.00014 Score=68.45 Aligned_cols=76 Identities=17% Similarity=0.304 Sum_probs=63.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEe--CcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEee
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVK--TQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEP 363 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~--~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~ 363 (461)
.+..+||++.|.-+++++.|...|.+|-......+..+ +.+++||+||-|.+.+++..|+..| +..++.+.|++..
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 67899999999999999999999999865544333332 4458999999999999999999999 9999999887754
No 98
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B.
Probab=97.41 E-value=0.0023 Score=53.80 Aligned_cols=109 Identities=12% Similarity=0.079 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC--CCCcceEEEEEeeeeeeCCCcEEE
Q 012554 16 NAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL--HYGEFSAEITTVDAQESYNGGVIV 92 (461)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~I~~~d~q~s~~~~ilv 92 (461)
..++++|++.+. .+-+.|..+|.++.++...+.+. .+.|.++|.+++... .+..+++.+..+.++. .++.+++
T Consensus 2 ~~~~~~~~~a~~~~D~~~~~~~~~~d~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~a~~ 77 (121)
T PF13474_consen 2 EALLEEWIEAFERGDIDALLSLFSDDFVFFGTGPGE---IWRGREAIRAYFERDFESFRPISIEFEDVQVSV-SGDVAVV 77 (121)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHEEEEEEEEETTSSS---EEESHHHHHHHHHHHHHTHSEEEEEEEEEEEEE-ETTEEEE
T ss_pred HHHHHHHHHHHHhCCHHHHHHhhCCCEEEEcCCCCc---eECCHHHHHHHHHHHhhhCceEEEEEEEEEEEE-CCCEEEE
Confidence 368899999988 66799999999999887755432 677999999888752 2366778888777775 3455666
Q ss_pred EEEEEEEc--CCCC-cceeEEEEEEEEeCCeEEEEcceE
Q 012554 93 LVTGYLTG--KDSV-RRKFSQSFFLAPQDKGYFVLNDVF 128 (461)
Q Consensus 93 ~V~G~~~~--~~~~-~~~F~q~F~L~~~~~~y~v~nd~f 128 (461)
.....+.. ++.. ...+..||+|..+++.|.|...=+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~r~t~v~~k~~~~Wki~h~H~ 116 (121)
T PF13474_consen 78 TGEFRLRFRNDGEEIEMRGRATFVFRKEDGGWKIVHIHW 116 (121)
T ss_dssp EEEEEEEEECTTCEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEecCCccceeeEEEEEEEEEECCEEEEEEEEe
Confidence 66665544 2222 477899999999999999886433
No 99
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.31 E-value=0.00053 Score=57.27 Aligned_cols=70 Identities=26% Similarity=0.441 Sum_probs=42.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC------CCcccCceeEEee
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS------PIVISGHRVVVEP 363 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~------~~~i~g~~i~V~~ 363 (461)
++-|+|.++...++.++|+++|++||.|..|++ .++...|||-|.+.+.|++|+..+ +..|.+..+.++.
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~----~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDF----SRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE------TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEe----cCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 357889999999999999999999999987443 334557899999999999998876 2456666665553
No 100
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.22 E-value=0.0027 Score=52.10 Aligned_cols=76 Identities=12% Similarity=0.144 Sum_probs=57.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhc--CCCeeEeEEEEeCc--CCccEEEEEEccHHHHHHHHHhC-CCccc----CceeEE
Q 012554 291 PSIYLKGLPPSATHALLENEFRK--FGTIRAGGIQVKTQ--KGFCFGFVEFEEENAVQSAIEAS-PIVIS----GHRVVV 361 (461)
Q Consensus 291 ~~lfV~nLp~~~te~~L~~~F~~--~G~i~~~~v~~~~~--k~~g~aFVeF~~~~~a~~Al~~~-~~~i~----g~~i~V 361 (461)
++|-|+|||-..|.++|.+++.. .|...-+-+.++-. .+.|||||-|.+++.+.+-.+.. +..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 58999999999999999998865 34444444555532 37899999999999999887776 66554 455677
Q ss_pred eeccc
Q 012554 362 EPKKS 366 (461)
Q Consensus 362 ~~a~~ 366 (461)
.+|+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 77654
No 101
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=97.19 E-value=0.0017 Score=67.98 Aligned_cols=124 Identities=18% Similarity=0.256 Sum_probs=85.9
Q ss_pred CCHHHHHHHHHHHHHHHHccCchhh-hccccCCceeecc------C--C-------------------CCc---cccccc
Q 012554 9 PTADIVANAFVHQYYLILHQSPQLV-HRFYQDISKLGRP------E--E-------------------NGA---MSITTT 57 (461)
Q Consensus 9 ~~~~~vg~~Fv~~YY~~l~~~p~~l-~~fY~~~s~l~~~------~--~-------------------~~~---~~~~~g 57 (461)
....++-.+|+++||...+.+..++ ...|+++|+++.. . . +-. ..-..|
T Consensus 335 ~~l~~LV~~Fl~~y~~~yD~~d~q~~~~~y~dns~FSlsi~~~~~~s~~~~~~~~~Y~k~SRNi~~l~~~~~r~srl~~g 414 (585)
T KOG3763|consen 335 EELKQLVLQFLQQYYKIYDNNDGQLLLYAYHDNSTFSLTINFLPVPSHPDPSSLGKYFKDSRNILKLKDPYLRASRLKHG 414 (585)
T ss_pred hHHHHHHHHHHHHHHHhhcCchhhhHHhhcCccceeEEEecccCCCCCCchHHHHHHHhhcchhhhhcCHHHHHHhhhcc
Confidence 3456778899999999999665554 4557889987441 1 0 000 223458
Q ss_pred HHHHHHHHHhCCCCcceEEEEE--eeeeeeCCCcEEEEEEEEEEcCC----CCcce---eEEEEEEEEeC-CeEEEEcce
Q 012554 58 MQAINDKILALHYGEFSAEITT--VDAQESYNGGVIVLVTGYLTGKD----SVRRK---FSQSFFLAPQD-KGYFVLNDV 127 (461)
Q Consensus 58 ~~~I~~~~~~l~~~~~~~~I~~--~d~q~s~~~~ilv~V~G~~~~~~----~~~~~---F~q~F~L~~~~-~~y~v~nd~ 127 (461)
..+|...|..||-+ +|.+.+ +|.-.-..+++.+.|.|.+.-.+ ...+. |+-||++.|-+ .+-.|+||.
T Consensus 415 ~~~Iv~aLs~LPkT--~Hdl~s~vvDv~~~~~~~l~ftv~G~f~d~~g~~~~s~~~~~~FtRtfvv~P~~ns~l~iv~d~ 492 (585)
T KOG3763|consen 415 ACDIVVALSALPKT--QHDLDSFVVDVWYQTGNLLGFTVAGVFRDGEGQNSPSNRALLGFTRTFVVTPRENSGLAIVNDQ 492 (585)
T ss_pred chHHHHHHHhCccc--hhhhhhhheeeeecccceEEEEEEEEeecCCccCCcccccccccceEEEEeeCCCCceEEEece
Confidence 88999999999966 555443 44433346679999999996432 12255 99999999987 489999998
Q ss_pred EEeecCC
Q 012554 128 FRYVDDA 134 (461)
Q Consensus 128 fr~~~~~ 134 (461)
+-.-...
T Consensus 493 Lfi~~~s 499 (585)
T KOG3763|consen 493 LFIASAS 499 (585)
T ss_pred eEEeecc
Confidence 8655543
No 102
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.19 E-value=0.0019 Score=50.95 Aligned_cols=70 Identities=14% Similarity=0.181 Sum_probs=46.0
Q ss_pred CEEEEcCCCCCCCHHH----HHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecc
Q 012554 291 PSIYLKGLPPSATHAL----LENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKK 365 (461)
Q Consensus 291 ~~lfV~nLp~~~te~~----L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~ 365 (461)
..|||.|||.+.+... |++++..||--. +.+ ..+.|+|.|.+.+.|.+|++.| +.++-|.+|.|.+..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkV---l~v----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKV---LSV----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--E---EE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEE---EEE----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 4689999999887654 667777887432 222 3467999999999999999999 889999999999875
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
..
T Consensus 76 ~~ 77 (90)
T PF11608_consen 76 KN 77 (90)
T ss_dssp -S
T ss_pred Cc
Confidence 43
No 103
>TIGR02246 conserved hypothetical protein. This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.
Probab=97.15 E-value=0.014 Score=49.49 Aligned_cols=109 Identities=14% Similarity=0.100 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHc-cCchhhhccccCCceee-ccCCCCcccccccHHHHHHHHHhC--C-CCcceEEEEEeeeeeeCCCc
Q 012554 15 ANAFVHQYYLILH-QSPQLVHRFYQDISKLG-RPEENGAMSITTTMQAINDKILAL--H-YGEFSAEITTVDAQESYNGG 89 (461)
Q Consensus 15 g~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~-~~~~~~~~~~~~g~~~I~~~~~~l--~-~~~~~~~I~~~d~q~s~~~~ 89 (461)
=..++.+|+..|+ .+++.|..+|.+++.+. ..+. ...|.++|.+.+..+ . ....++.+...+.+-..++.
T Consensus 6 i~~l~~~~~~a~~~~D~~~~~~~~~~Da~~~~~~g~-----~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 80 (128)
T TIGR02246 6 IRALVATWEAAWAAGDAEGFADLFTPDGVFVTVPGQ-----VWKGREAIAAAHEAFLAGPYKGTRVTIDVIEVRFLGPDL 80 (128)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhhCCCceEECCCCC-----eecCHHHHHHHHHHHhcccCCCcEEEeeeEEEEecCCCE
Confidence 3567889999999 59999999999999886 4433 679999999988754 1 22234566555554444444
Q ss_pred EEEEEEEEEEcCCCCc----ceeEEEEEEEEeCCeEEEEcceE
Q 012554 90 VIVLVTGYLTGKDSVR----RKFSQSFFLAPQDKGYFVLNDVF 128 (461)
Q Consensus 90 ilv~V~G~~~~~~~~~----~~F~q~F~L~~~~~~y~v~nd~f 128 (461)
.++...-.+...+... ....-+|++...+++|.|..|=+
T Consensus 81 A~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~g~W~I~~~h~ 123 (128)
T TIGR02246 81 AIVHAIQTITAPGKGRARPDAAVRLTFVAVKRDGRWLLAADHN 123 (128)
T ss_pred EEEEEEEEEEcCCCCCCCCCcceEEEEEEEeeCCeEEEEeccC
Confidence 4444333344433221 23344666777889999988743
No 104
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.13 E-value=0.00044 Score=68.10 Aligned_cols=78 Identities=21% Similarity=0.314 Sum_probs=62.1
Q ss_pred CCEEE-EcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcC--CccEEEEEEccHHHHHHHHHhCCCcccCceeEEeeccc
Q 012554 290 GPSIY-LKGLPPSATHALLENEFRKFGTIRAGGIQVKTQK--GFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEPKKS 366 (461)
Q Consensus 290 ~~~lf-V~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k--~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~a~~ 366 (461)
..++| |++|++.+++++|+.+|..+|.|..+.+..+... .++|+||+|........++......+.++.+.+++..+
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDEP 263 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCCC
Confidence 44555 9999999999999999999999987444333222 78999999999999888887545667888898887766
Q ss_pred c
Q 012554 367 T 367 (461)
Q Consensus 367 ~ 367 (461)
+
T Consensus 264 ~ 264 (285)
T KOG4210|consen 264 R 264 (285)
T ss_pred C
Confidence 4
No 105
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.13 E-value=0.00049 Score=64.32 Aligned_cols=68 Identities=25% Similarity=0.371 Sum_probs=60.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEe
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVE 362 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~ 362 (461)
..+.|+|-++..++.+.+|.+.|.++|.+....+ ..+++||+|++.+++..||..+ +..+.++.|++.
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVE 166 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhh------hccccceeehhhhhhhhcchhccchhhcCceeeec
Confidence 4789999999999999999999999999854211 4568999999999999999999 999999999994
No 106
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=97.04 E-value=0.0064 Score=66.66 Aligned_cols=70 Identities=7% Similarity=-0.000 Sum_probs=48.6
Q ss_pred CEEEEcCCC--CCCCHHHHHHHHhcCCCeeEeE---EEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 291 PSIYLKGLP--PSATHALLENEFRKFGTIRAGG---IQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 291 ~~lfV~nLp--~~~te~~L~~~F~~~G~i~~~~---v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
.++|| |+- ..++..+|-.++..-+.|..-. |.+ ...|.||+.. ...+...+..+ ...+.|+.|.|+.+
T Consensus 487 ~~~~~-~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i----~~~~s~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (629)
T PRK11634 487 QLYRI-EVGRDDGVEVRHIVGAIANEGDISSRYIGNIKL----FASHSTIELP-KGMPGEVLQHFTRTRILNKPMNMQLL 560 (629)
T ss_pred EEEEE-ecccccCCCHHHHHHHHHhhcCCChhhCCcEEE----eCCceEEEcC-hhhHHHHHHHhccccccCCceEEEEC
Confidence 34555 443 4588888888887666564321 222 3458899984 55677888888 88999999999987
Q ss_pred cc
Q 012554 365 KS 366 (461)
Q Consensus 365 ~~ 366 (461)
+.
T Consensus 561 ~~ 562 (629)
T PRK11634 561 GD 562 (629)
T ss_pred CC
Confidence 53
No 107
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.00 E-value=0.026 Score=56.11 Aligned_cols=68 Identities=22% Similarity=0.065 Sum_probs=55.1
Q ss_pred CCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcc--cCceeEEeecccc
Q 012554 297 GLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVI--SGHRVVVEPKKST 367 (461)
Q Consensus 297 nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i--~g~~i~V~~a~~~ 367 (461)
|--+-+|.+-|..+....|+|.++.|..+ .---|.|||++.+.|++|.++| +.+| +-.+|+|+++++.
T Consensus 129 Np~YpItvDVly~Icnp~GkVlRIvIfkk---ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 129 NPQYPITVDVLYTICNPQGKVLRIVIFKK---NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPT 199 (494)
T ss_pred cCccccchhhhhhhcCCCCceEEEEEEec---cceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcc
Confidence 44467899999999999999998544222 3345899999999999999999 7776 4568999999987
No 108
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.87 E-value=0.00092 Score=69.79 Aligned_cols=80 Identities=19% Similarity=0.319 Sum_probs=71.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcC--CccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQK--GFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k--~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
...++|||++||...++.+++++...||.++...+..+... +++|+|.+|-+......|+..+ +..++++.|.|..+
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 45789999999999999999999999999998766666553 8999999999999999999999 99999999999988
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
...
T Consensus 367 ~~g 369 (500)
T KOG0120|consen 367 IVG 369 (500)
T ss_pred hcc
Confidence 765
No 109
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A.
Probab=96.80 E-value=0.024 Score=46.05 Aligned_cols=101 Identities=14% Similarity=0.008 Sum_probs=72.7
Q ss_pred HHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCCCCcceEEEEEeeeeeeCCCcEEEEEE
Q 012554 17 AFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALHYGEFSAEITTVDAQESYNGGVIVLVT 95 (461)
Q Consensus 17 ~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~I~~~d~q~s~~~~ilv~V~ 95 (461)
+.+++|...++ .+.+.|..||.++..+...+. ...|.+++.+.+..-.......++..+..+.. ++..++...
T Consensus 3 a~~~~~~~A~~~~D~~~~~~~~~~d~~~~~~~g-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~-gd~a~~~~~ 76 (107)
T PF14534_consen 3 ALEEQYEDAFNAGDIDALASLYADDFVFVGPGG-----TILGKEAILAAFKSGFARFSSIKFEDVEVRVL-GDTAVVRGR 76 (107)
T ss_dssp HHHHHHHHHHHTTHHHHHHTTEEEEEEEEETTS-----EEEEHHHHHHHHHHHCEEEEEEEEEEEEEEEE-TTEEEEEEE
T ss_pred HHHHHHHHHHHhCCHHHHHhhhCCCEEEECCCC-----CEeCHHHHHHHHhhccCCCceEEEEEEEEEEE-CCEEEEEEE
Confidence 56788888877 669999999999988887653 55689999999987544445666777777777 555555555
Q ss_pred EEEEcCCCC---cceeEEEEEEEEeCCeEEE
Q 012554 96 GYLTGKDSV---RRKFSQSFFLAPQDKGYFV 123 (461)
Q Consensus 96 G~~~~~~~~---~~~F~q~F~L~~~~~~y~v 123 (461)
..++..... ...+..+.++..++++|-|
T Consensus 77 ~~~~~~~~g~~~~~~~~~~~v~~k~~g~W~i 107 (107)
T PF14534_consen 77 WTFTWRGDGEPVTIRGRFTSVWKKQDGKWRI 107 (107)
T ss_dssp EEEEETTTTEEEEEEEEEEEEEEEETTEEEE
T ss_pred EEEEEecCCceEEEEEEEEEEEEEeCCEEEC
Confidence 666554322 2556777777778888865
No 110
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.66 E-value=0.0047 Score=63.78 Aligned_cols=63 Identities=27% Similarity=0.319 Sum_probs=55.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHh-cCCCeeEeEEEEe-CcC-CccEEEEEEccHHHHHHHHHhC
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFR-KFGTIRAGGIQVK-TQK-GFCFGFVEFEEENAVQSAIEAS 350 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~-~~G~i~~~~v~~~-~~k-~~g~aFVeF~~~~~a~~Al~~~ 350 (461)
.+.++||||+||--++.++|..+|. -||.|..+.|.++ .-| .+|-|-|+|.+..+..+||.+.
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsar 433 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISAR 433 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhh
Confidence 6789999999999999999999997 7999999766555 223 7888999999999999999886
No 111
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=96.54 E-value=0.0088 Score=60.05 Aligned_cols=75 Identities=19% Similarity=0.215 Sum_probs=64.3
Q ss_pred CCEEEEcCCCCC-CCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecccc
Q 012554 290 GPSIYLKGLPPS-ATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKST 367 (461)
Q Consensus 290 ~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~~ 367 (461)
...|.|.||..+ +|.+-|..+|.-||.|.++.| ..+|. -.|.|.+.+...|+-|++.+ ++.|.|+.|+|...|-.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVki--l~nkk-d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKI--LYNKK-DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHT 373 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEe--eecCC-cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCc
Confidence 578999999765 899999999999999998554 33333 56999999999999999999 99999999999988754
No 112
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.48 E-value=0.0067 Score=62.67 Aligned_cols=62 Identities=27% Similarity=0.463 Sum_probs=48.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcC-----Ccc---EEEEEEccHHHHHHHHHhC
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQK-----GFC---FGFVEFEEENAVQSAIEAS 350 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k-----~~g---~aFVeF~~~~~a~~Al~~~ 350 (461)
.-.++||||+||++++|+.|...|..||.+.- +...+.+. .+| |+|+.|+++.+++.-|.+.
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 55789999999999999999999999999862 12111111 466 9999999999988877665
No 113
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=96.32 E-value=0.015 Score=54.26 Aligned_cols=74 Identities=19% Similarity=0.343 Sum_probs=58.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCccc-CceeEEeecc
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVIS-GHRVVVEPKK 365 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~-g~~i~V~~a~ 365 (461)
+...||+.|||.+++.+.|..+|.+|...+. |.+... ..+.+||+|.+...+..|...+ +..|- ...+.|..++
T Consensus 145 pn~ilf~~niP~es~~e~l~~lf~qf~g~ke--ir~i~~-~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 145 PNNILFLTNIPSESESEMLSDLFEQFPGFKE--IRLIPP-RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred CceEEEEecCCcchhHHHHHHHHhhCcccce--eEeccC-CCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 4679999999999999999999999988887 333322 4578999999998888888887 66665 6677776553
No 114
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.31 E-value=0.029 Score=56.77 Aligned_cols=64 Identities=25% Similarity=0.252 Sum_probs=52.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEe---C--cC----------CccEEEEEEccHHHHHHHHHhC
Q 012554 287 EAEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVK---T--QK----------GFCFGFVEFEEENAVQSAIEAS 350 (461)
Q Consensus 287 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~---~--~k----------~~g~aFVeF~~~~~a~~Al~~~ 350 (461)
+.++++|.+-|||.+-.-+.|.++|+.||.|+.+.|... . .+ .+-+|||+|+..+.|.+|.+.+
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 467999999999999888999999999999999655322 0 01 1456999999999999999887
No 115
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.20 E-value=0.019 Score=54.55 Aligned_cols=61 Identities=18% Similarity=0.177 Sum_probs=45.5
Q ss_pred HHHHHHh-cCCCeeEeEEEEeCcC-CccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeeccc
Q 012554 306 LLENEFR-KFGTIRAGGIQVKTQK-GFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKS 366 (461)
Q Consensus 306 ~L~~~F~-~~G~i~~~~v~~~~~k-~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~ 366 (461)
+|...|. +||+|+.+.|--.... ..|.+||.|...++|++|++.+ +-.++|++|..+...-
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 3444444 8999988433221111 5788999999999999999999 9999999999886543
No 116
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=96.09 E-value=0.0033 Score=65.29 Aligned_cols=77 Identities=23% Similarity=0.262 Sum_probs=66.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcC--CccEEEEEEccHHHHHHHHHhCCCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQK--GFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k--~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~a 364 (461)
.+..++|+.-|...++..+|.+||+.+|+|..|.|..+... ++|.+||+|.+.+++..||...|..+.|..|.|...
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLS 255 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEeccc
Confidence 56789999999999999999999999999999665544332 899999999999999999976699999999888754
No 117
>PF12893 Lumazine_bd_2: Putative lumazine-binding; PDB: 3BLZ_C 3DUK_F 3FKA_C.
Probab=96.03 E-value=0.13 Score=43.39 Aligned_cols=104 Identities=16% Similarity=0.189 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHh-----CCCCcceEEEEEeeeeeeCCCc
Q 012554 16 NAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILA-----LHYGEFSAEITTVDAQESYNGG 89 (461)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~-----l~~~~~~~~I~~~d~q~s~~~~ 89 (461)
.+-|+.|++-|. .+.+.|.+.+++++.|.... ++. .....+++..+.+.+ .....|..+|.++|.. ++.
T Consensus 7 ~~~v~~Y~dg~~~gD~~~l~~~f~~~a~~~~~~-~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~i~i~---g~~ 81 (116)
T PF12893_consen 7 EATVQDYFDGLYNGDSEKLRSAFHPDARLQGVR-KGK-LRTMPIEEFIARVKSRVSPKPPGQERKESILSIDID---GDV 81 (116)
T ss_dssp HHHHHHHHHHHHHT-HHHHGGGEEEEEEEEEEE-TTE-EEEEETHHHHHHHHHC---H-SSTT-EEEEEEEEEE---TTE
T ss_pred HHHHHHHHHHHHhcCHHHHHHhhCCCcEEEEEc-CCc-eEEeCHHHHHHHHHhhccccCCCCCceeEEEEEEEE---CCE
Confidence 345888999888 78999999999999886654 332 344566677777774 3566789999998876 354
Q ss_pred EEEEEEEEEEcCCCCcceeEEEEEEEEeCCeEEEEcceEE
Q 012554 90 VIVLVTGYLTGKDSVRRKFSQSFFLAPQDKGYFVLNDVFR 129 (461)
Q Consensus 90 ilv~V~G~~~~~~~~~~~F~q~F~L~~~~~~y~v~nd~fr 129 (461)
-+|.|.-.+. ...|.-.|.|.+.+++|-|.|=+|.
T Consensus 82 A~a~v~~~~~-----~~~~~d~~~L~K~dg~WkIv~k~~~ 116 (116)
T PF12893_consen 82 ASAKVEYEFP-----GFWFVDYFTLVKTDGGWKIVSKVYH 116 (116)
T ss_dssp EEEEEEEEEE-----TEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEEEC-----CCceEEEEEEEEECCEEEEEEEecC
Confidence 5566665554 3489999999999999999998874
No 118
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.02 E-value=0.015 Score=56.97 Aligned_cols=80 Identities=15% Similarity=0.318 Sum_probs=61.7
Q ss_pred CCCCEEEEcCCCCCCCHHH----H--HHHHhcCCCeeEeEEEEeCcC---CccE--EEEEEccHHHHHHHHHhC-CCccc
Q 012554 288 AEGPSIYLKGLPPSATHAL----L--ENEFRKFGTIRAGGIQVKTQK---GFCF--GFVEFEEENAVQSAIEAS-PIVIS 355 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~----L--~~~F~~~G~i~~~~v~~~~~k---~~g~--aFVeF~~~~~a~~Al~~~-~~~i~ 355 (461)
.+..-+||-+|+..+..++ | .++|.+||.|+.+.|..+... ..+. .||+|.+.++|.++|... +..++
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 4567899999999877766 3 479999999998544332211 1222 399999999999999999 99999
Q ss_pred CceeEEeecccc
Q 012554 356 GHRVVVEPKKST 367 (461)
Q Consensus 356 g~~i~V~~a~~~ 367 (461)
||.|+..+-..+
T Consensus 192 Gr~lkatYGTTK 203 (480)
T COG5175 192 GRVLKATYGTTK 203 (480)
T ss_pred CceEeeecCchH
Confidence 999999887665
No 119
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=95.67 E-value=0.033 Score=40.37 Aligned_cols=52 Identities=17% Similarity=0.373 Sum_probs=38.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHH
Q 012554 291 PSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAI 347 (461)
Q Consensus 291 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al 347 (461)
+.|-|.+.+.+.. +++...|..||+|....+ . ....+.||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~--~--~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYV--P--ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEc--C--CCCcEEEEEECCHHHHHhhC
Confidence 3567888876655 445568999999987433 2 23457899999999999985
No 120
>PF12680 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8Z_A 3DMC_A 3FH1_A 1TUH_A 3F14_A 3ER7_A 1Z1S_A 3F7X_A ....
Probab=95.60 E-value=0.089 Score=42.00 Aligned_cols=72 Identities=13% Similarity=0.135 Sum_probs=53.1
Q ss_pred HHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCC--CCcceEEEEEeeeeeeCCCcEEEEEE
Q 012554 19 VHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALH--YGEFSAEITTVDAQESYNGGVIVLVT 95 (461)
Q Consensus 19 v~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~--~~~~~~~I~~~d~q~s~~~~ilv~V~ 95 (461)
|+.||+.++ .+.+.|..||+++..+..+.. ...|.++|.+.+..+- +.+.++.|..+ ...++.+++...
T Consensus 1 V~~~~~a~~~~d~~~i~~~~~~d~~~~~~~~-----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~gd~v~~~~~ 72 (102)
T PF12680_consen 1 VRRFFEAWNAGDLDAIAALFAPDAVFHDPGG-----TLRGREAIREFFEEFFESFPDIRFEIHDI---FADGDRVVVEWT 72 (102)
T ss_dssp HHHHHHHHHTTHHHHHHHTEEEEEEEEETTS-----EEESHHHHHHHHHHHHHHEEEEEEEEEEE---EEETTEEEEEEE
T ss_pred CHHHHHHHHcCCHHHHHHHcCCCEEEEeCCC-----cccCHHHHHHHHHHHHhcCCceEEEEEEE---EEcCCEEEEEEE
Confidence 789999998 667999999999999887633 5899999999998773 56566666665 223444555555
Q ss_pred EEE
Q 012554 96 GYL 98 (461)
Q Consensus 96 G~~ 98 (461)
...
T Consensus 73 ~~~ 75 (102)
T PF12680_consen 73 VTG 75 (102)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 121
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=95.48 E-value=0.14 Score=46.31 Aligned_cols=57 Identities=23% Similarity=0.376 Sum_probs=49.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS 350 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~ 350 (461)
..+++.|.+||...+|++|+++..+-|.|...+|.. .+++.|+|-..++++-||..+
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~r-----Dg~GvV~~~r~eDMkYAvr~l 170 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQR-----DGVGVVEYLRKEDMKYAVRKL 170 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeec-----ccceeeeeeehhhHHHHHHhh
Confidence 358999999999999999999999999998755432 357899999999999999988
No 122
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=95.20 E-value=0.018 Score=57.44 Aligned_cols=74 Identities=20% Similarity=0.093 Sum_probs=54.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcC-----CCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhCCCcccCceeEEeec
Q 012554 291 PSIYLKGLPPSATHALLENEFRKF-----GTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEPK 364 (461)
Q Consensus 291 ~~lfV~nLp~~~te~~L~~~F~~~-----G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~a 364 (461)
-.|-+++||+++++.++.++|..- |...-+.|....++..|-|||.|..++.++.||.+....|+-|.|.+..+
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRS 240 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 356788999999999999999632 22222112222344668899999999999999998877777777766544
No 123
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=95.12 E-value=0.045 Score=57.41 Aligned_cols=62 Identities=26% Similarity=0.293 Sum_probs=49.2
Q ss_pred HHHHHHHhcCCCeeEeEEEEe-CcC----CccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeeccc
Q 012554 305 ALLENEFRKFGTIRAGGIQVK-TQK----GFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKS 366 (461)
Q Consensus 305 ~~L~~~F~~~G~i~~~~v~~~-~~k----~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~ 366 (461)
++++..+.+||.|..|.|... .+. +-|..||+|.+.+++++|+++| |..+++|.|...+-..
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 356677789999998666444 222 5567899999999999999999 9999999998876543
No 124
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.88 E-value=0.1 Score=43.06 Aligned_cols=75 Identities=21% Similarity=0.306 Sum_probs=49.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEE---------eCcCCccEEEEEEccHHHHHHHHHhCCCcccCcee
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQV---------KTQKGFCFGFVEFEEENAVQSAIEASPIVISGHRV 359 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~---------~~~k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i 359 (461)
..+-|.|-+.|.. ....|-+.|++||.|....-.+ ........-.|.|+++.+|++||..++..|+|..+
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 3567888899887 4566778999999996531000 01114567899999999999999999999988644
Q ss_pred -EEeec
Q 012554 360 -VVEPK 364 (461)
Q Consensus 360 -~V~~a 364 (461)
-|.+.
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 45544
No 125
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=94.80 E-value=0.079 Score=56.70 Aligned_cols=75 Identities=16% Similarity=0.180 Sum_probs=59.8
Q ss_pred CCCC-EEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEe-CcC--CccEEEEEEccHHHHHHHHHhC-CCcccCceeEEe
Q 012554 288 AEGP-SIYLKGLPPSATHALLENEFRKFGTIRAGGIQVK-TQK--GFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVE 362 (461)
Q Consensus 288 ~~~~-~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~-~~k--~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~ 362 (461)
..++ -|-+.|+|++++-+||-+||..|-.+.. .|.++ .++ ..|-|.|-|++.++|.+|...+ +..|..+.|++.
T Consensus 864 ~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~-sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 864 SPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPN-SIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred CCCCeEEEecCCCccccHHHHHHHhcccccCCC-ceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 4556 6678899999999999999999965543 24444 333 5677899999999999999998 889999988875
Q ss_pred e
Q 012554 363 P 363 (461)
Q Consensus 363 ~ 363 (461)
.
T Consensus 943 i 943 (944)
T KOG4307|consen 943 I 943 (944)
T ss_pred e
Confidence 3
No 126
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=94.70 E-value=0.22 Score=44.93 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=13.3
Q ss_pred CHHHHHHHHhcCCCeeEeEEEEeC
Q 012554 303 THALLENEFRKFGTIRAGGIQVKT 326 (461)
Q Consensus 303 te~~L~~~F~~~G~i~~~~v~~~~ 326 (461)
+.++|-++=+-||.|.++.+.|..
T Consensus 87 nk~qIGKVDEIfG~i~d~~fsIK~ 110 (215)
T KOG3262|consen 87 NKEQIGKVDEIFGPINDVHFSIKP 110 (215)
T ss_pred chhhhcchhhhcccccccEEEEec
Confidence 344444444456777776565554
No 127
>cd00781 ketosteroid_isomerase ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon. Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.
Probab=94.52 E-value=0.38 Score=40.43 Aligned_cols=51 Identities=16% Similarity=0.172 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCC
Q 012554 16 NAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALH 69 (461)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~ 69 (461)
..+|+.||..++ .+.+.|..+|.++..+.+.... ..+.|.++|.+.+..+.
T Consensus 6 ~~~v~~~~~a~~~~D~~~~~~l~aed~~~~~p~~~---~~~~G~~~i~~~~~~~~ 57 (122)
T cd00781 6 KAAVQRYVEAVNAGDPEGIVALFADDATVEDPVGS---PPRSGRAAIAAFYAQSL 57 (122)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHcCCCeEEeCCCCC---CCccCHHHHHHHHHHHh
Confidence 467899999988 6899999999999998764321 26899999999998874
No 128
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=94.38 E-value=0.028 Score=53.30 Aligned_cols=69 Identities=20% Similarity=0.328 Sum_probs=54.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcC------------Cc--cEEEEEEccHHHHHHHHHhC-CCcc
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQK------------GF--CFGFVEFEEENAVQSAIEAS-PIVI 354 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k------------~~--g~aFVeF~~~~~a~~Al~~~-~~~i 354 (461)
..-||+++||..+....||++|++||.|-+|.+.-.... .. .-|.|+|.+...|..+.+.+ +..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 568999999999999999999999999988544322110 11 12679999999999988888 8888
Q ss_pred cCce
Q 012554 355 SGHR 358 (461)
Q Consensus 355 ~g~~ 358 (461)
+|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 8864
No 129
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=94.36 E-value=0.11 Score=52.38 Aligned_cols=77 Identities=21% Similarity=0.195 Sum_probs=61.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCccc-CceeEEeecc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVIS-GHRVVVEPKK 365 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~-g~~i~V~~a~ 365 (461)
++..+|...|+|.++++++|+.+|..-|-...... .-.+.+.++.+.+++.+.|-.|+..+ .+.++ +..|+|.+.+
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafk--ff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFK--FFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSK 489 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeee--ecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeec
Confidence 67889999999999999999999988776644222 22334568999999999999998888 77777 4478998876
Q ss_pred c
Q 012554 366 S 366 (461)
Q Consensus 366 ~ 366 (461)
.
T Consensus 490 s 490 (492)
T KOG1190|consen 490 S 490 (492)
T ss_pred c
Confidence 4
No 130
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.28 E-value=0.14 Score=44.99 Aligned_cols=74 Identities=14% Similarity=0.232 Sum_probs=49.0
Q ss_pred CCCCEEEEcCCC-----CCCCHH----HHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhCCCcccCce
Q 012554 288 AEGPSIYLKGLP-----PSATHA----LLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEASPIVISGHR 358 (461)
Q Consensus 288 ~~~~~lfV~nLp-----~~~te~----~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~ 358 (461)
++..+|.|.=+. ...-++ +|-+.|..||.+.- |++.. +.-+|+|.+-.+|.+|+...+..|+|+.
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvL--vRfv~----~~mwVTF~dg~sALaals~dg~~v~g~~ 98 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVL--VRFVG----DTMWVTFRDGQSALAALSLDGIQVNGRT 98 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECE--EEEET----TCEEEEESSCHHHHHHHHGCCSEETTEE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEE--EEEeC----CeEEEEECccHHHHHHHccCCcEECCEE
Confidence 556677776554 112233 56778889998764 33322 2358999999999999999999999999
Q ss_pred eEEeecccc
Q 012554 359 VVVEPKKST 367 (461)
Q Consensus 359 i~V~~a~~~ 367 (461)
|+|..+.+.
T Consensus 99 l~i~LKtpd 107 (146)
T PF08952_consen 99 LKIRLKTPD 107 (146)
T ss_dssp EEEEE----
T ss_pred EEEEeCCcc
Confidence 999998876
No 131
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=94.06 E-value=0.039 Score=55.67 Aligned_cols=71 Identities=24% Similarity=0.330 Sum_probs=57.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcC--CCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC--CCcccCceeEEeeccc
Q 012554 291 PSIYLKGLPPSATHALLENEFRKF--GTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS--PIVISGHRVVVEPKKS 366 (461)
Q Consensus 291 ~~lfV~nLp~~~te~~L~~~F~~~--G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~--~~~i~g~~i~V~~a~~ 366 (461)
.++|++||...++..+|+.+|... +--.. +.+ ..+|+||.+.+...+.+|++.+ ..++.|+++.|+..-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~--fl~----k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQ--FLV----KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcc--eee----ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 579999999999999999999643 11111 111 3579999999999999999999 6678899999998776
Q ss_pred c
Q 012554 367 T 367 (461)
Q Consensus 367 ~ 367 (461)
+
T Consensus 76 k 76 (584)
T KOG2193|consen 76 K 76 (584)
T ss_pred H
Confidence 6
No 132
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.05 E-value=0.31 Score=36.45 Aligned_cols=54 Identities=19% Similarity=0.313 Sum_probs=41.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcC----CCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKF----GTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS 350 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~----G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~ 350 (461)
-.+|+|.+|. +++.++++.+|..| +..+ |....+. -|-|.|.+.+.|.+||.++
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~---IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFR---IEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCce---EEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 3589999995 57889999999998 5433 4444443 3579999999999999764
No 133
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=93.84 E-value=0.18 Score=52.94 Aligned_cols=74 Identities=18% Similarity=0.246 Sum_probs=56.3
Q ss_pred CCEEEEcCCCCCCCH------HHHHHHHhcCCCeeEeEEEEeCc-CCccEEEEEEccHHHHHHHHHhC-CCccc-CceeE
Q 012554 290 GPSIYLKGLPPSATH------ALLENEFRKFGTIRAGGIQVKTQ-KGFCFGFVEFEEENAVQSAIEAS-PIVIS-GHRVV 360 (461)
Q Consensus 290 ~~~lfV~nLp~~~te------~~L~~~F~~~G~i~~~~v~~~~~-k~~g~aFVeF~~~~~a~~Al~~~-~~~i~-g~~i~ 360 (461)
..-|+|-|+|---.. .-|.++|+++|+|..+.+.++.. +.+||.|++|.+..+|+.|++.+ |..|+ .++..
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 467889999853222 23678999999998765555533 37999999999999999999999 87776 66666
Q ss_pred Eee
Q 012554 361 VEP 363 (461)
Q Consensus 361 V~~ 363 (461)
|..
T Consensus 138 v~~ 140 (698)
T KOG2314|consen 138 VRL 140 (698)
T ss_pred eeh
Confidence 653
No 134
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=93.72 E-value=0.077 Score=58.39 Aligned_cols=76 Identities=24% Similarity=0.395 Sum_probs=64.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCccc--CceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVIS--GHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~--g~~i~V~~a 364 (461)
.....+||++|..++....|...|..||.|+. | +.++..-|++|.|++...+++|++.+ +..|+ .++|+|.++
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~--I--dy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla 528 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRI--I--DYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLA 528 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCccee--e--ecccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccc
Confidence 56789999999999999999999999999986 3 33446679999999999999999998 88887 467888887
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
..-
T Consensus 529 ~~~ 531 (975)
T KOG0112|consen 529 SPP 531 (975)
T ss_pred cCC
Confidence 653
No 135
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=93.61 E-value=0.22 Score=49.38 Aligned_cols=77 Identities=17% Similarity=0.193 Sum_probs=59.4
Q ss_pred CCCCEEEEcCCCC----CCC-------HHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCccc
Q 012554 288 AEGPSIYLKGLPP----SAT-------HALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVIS 355 (461)
Q Consensus 288 ~~~~~lfV~nLp~----~~t-------e~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~ 355 (461)
...++|.++||=. ..+ .++|++...+||.|..+ .+..+...|.+-|.|.+.+.|+.+|+.| |..++
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~v--vv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fd 340 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKV--VVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFD 340 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceE--EEeccCCCceeEEEeCChHHHHHHHHHhcCeeec
Confidence 4468999999821 233 24566677899999984 3333337788999999999999999999 99999
Q ss_pred CceeEEeeccc
Q 012554 356 GHRVVVEPKKS 366 (461)
Q Consensus 356 g~~i~V~~a~~ 366 (461)
||.|..+..-.
T Consensus 341 gRql~A~i~DG 351 (382)
T KOG1548|consen 341 GRQLTASIWDG 351 (382)
T ss_pred ceEEEEEEeCC
Confidence 99998876543
No 136
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=93.41 E-value=0.1 Score=52.26 Aligned_cols=78 Identities=19% Similarity=0.242 Sum_probs=59.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCC-eeE--eEEEEeCc-CCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKFGT-IRA--GGIQVKTQ-KGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~G~-i~~--~~v~~~~~-k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
...|-+++||++.+.++|-++|..|-. |+. +++.++.. +..|-|||+|.+.+.+.+|..+. ......|.|.|...
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 457889999999999999999998864 333 34444432 26688999999999999998887 55556888888876
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
...
T Consensus 360 S~e 362 (508)
T KOG1365|consen 360 SVE 362 (508)
T ss_pred cHH
Confidence 543
No 137
>PF08332 CaMKII_AD: Calcium/calmodulin dependent protein kinase II Association; InterPro: IPR013543 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain is found at the C terminus of the Calcium/calmodulin dependent protein kinases II (CaMKII). These proteins also have a Ser/Thr protein kinase domain (IPR000719 from INTERPRO) at their N terminus []. The function of the CaMKII association domain is the assembly of the single proteins into large (8 to 14 subunits) multimers [] and is a prominent kinase in the central nervous system that may function in long-term potentiation and neurotransmitter release. ; GO: 0004683 calmodulin-dependent protein kinase activity, 0005516 calmodulin binding, 0006468 protein phosphorylation; PDB: 2W2C_F 3H51_B 3SOA_A 2UX0_A 1HKX_M 2F86_B.
Probab=92.87 E-value=4.1 Score=35.20 Aligned_cols=111 Identities=10% Similarity=0.017 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHccCchhhhccccCC-ceeeccCCCCcccccccHHHHHHHHHhC---CCCcceEEEEEeeeeeeCC
Q 012554 12 DIVANAFVHQYYLILHQSPQLVHRFYQDI-SKLGRPEENGAMSITTTMQAINDKILAL---HYGEFSAEITTVDAQESYN 87 (461)
Q Consensus 12 ~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~-s~l~~~~~~~~~~~~~g~~~I~~~~~~l---~~~~~~~~I~~~d~q~s~~ 87 (461)
++|..-|-+.==.+-..+++...++|.++ ++|...-.+ ..+.|.+.|..+|..+ ....++..|.+-..|-..+
T Consensus 3 ~eI~~l~~~w~~ai~tgD~~~~~~ly~~d~av~~Pt~s~---~~~~g~~~~~~YF~~~l~~~~~~~~~tI~~p~V~~lg~ 79 (128)
T PF08332_consen 3 QEIAALFDRWNDAIQTGDPETYAKLYAPDVAVFEPTVSN---QLREGLEFHKFYFDHFLAKKPQGVNTTILNPHVRLLGD 79 (128)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHEEEEEEEEEGGGTT---SEEESCHHHHHHHHHTGTTTSSCEEEEEEEEEEEEEST
T ss_pred HHHHHHHHHHHHHHHcCCHHHHhhhcCCCeeEeccccCC---ceecChHHHHHHHhcccccCCCceeeEecCCeEEEcCC
Confidence 56666665555555559999999999999 888664332 2788999999888744 3444456677777776666
Q ss_pred CcEEEEEEEEEEcCC--CCc--ceeEEEEEEEEeCCeEEEEc
Q 012554 88 GGVIVLVTGYLTGKD--SVR--RKFSQSFFLAPQDKGYFVLN 125 (461)
Q Consensus 88 ~~ilv~V~G~~~~~~--~~~--~~F~q~F~L~~~~~~y~v~n 125 (461)
+..++.=+=.++..+ ... ..---||+....+++|.|.+
T Consensus 80 ~~Ai~~gvy~f~~~d~~G~~~~~~areT~v~~~~~g~W~ivh 121 (128)
T PF08332_consen 80 NAAIDAGVYTFQFVDKDGVPRTVQARETRVWQKRDGKWKIVH 121 (128)
T ss_dssp TEEEEEEEEEEEEESTTSSEEEEEEEEEEEEEEETTEEEEEE
T ss_pred CEEEEeeEEEEEeecCCCCeeeEEEeEEEEEEEeCCeEEEEE
Confidence 555544444444432 222 34466888888999999875
No 138
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=92.37 E-value=0.13 Score=54.22 Aligned_cols=76 Identities=11% Similarity=0.103 Sum_probs=61.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHh-cCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcc---cCceeEEe
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFR-KFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVI---SGHRVVVE 362 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~-~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i---~g~~i~V~ 362 (461)
...+.|||.||-.-.|.-+|+.++. .+|.|.. +++++-+..|||.|.+.+.|.+.+.+| ++.+ +.+.|.+.
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee----~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ad 517 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEE----FWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIAD 517 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHH----HHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEee
Confidence 5578999999998899999999998 4566654 355665667899999999999988888 6665 57788888
Q ss_pred ecccc
Q 012554 363 PKKST 367 (461)
Q Consensus 363 ~a~~~ 367 (461)
+....
T Consensus 518 f~~~d 522 (718)
T KOG2416|consen 518 FVRAD 522 (718)
T ss_pred ecchh
Confidence 87654
No 139
>TIGR02096 conserved hypothetical protein, steroid delta-isomerase-related. This family of proteins about 135 amino acids in length largely restricted to the Proteobacteria. This family and a delta5-3-ketosteroid isomerase from Pseudomonas testosteroni appear homologous, especially toward their respective N-termini. Members, therefore, probably are enzymes.
Probab=91.97 E-value=2.3 Score=35.89 Aligned_cols=60 Identities=2% Similarity=0.072 Sum_probs=44.1
Q ss_pred HHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC--CCCcceEEEEEe
Q 012554 18 FVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL--HYGEFSAEITTV 80 (461)
Q Consensus 18 Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~I~~~ 80 (461)
-|+.||+.++ .+.+.|..||.++..+...... ....|.++|.+.+..+ .+.+++++|..+
T Consensus 3 iv~~~~~a~~~~d~~~~~~~~~~d~~~~~~~~~---~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~ 65 (129)
T TIGR02096 3 LAQHWIEAFNRGDMDAVLALLAEDVLYDDNQGG---RVLGGKAQLARFLAPYRTAFPDLLVDVVVC 65 (129)
T ss_pred HHHHHHHHHHCCCHHHHHHhcCCCeEEEcCCCC---cEeccHHHHHHHHHHHHHhCchhhceeEEE
Confidence 4788999998 5899999999999887765431 2456799998887755 255666666543
No 140
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=91.46 E-value=0.012 Score=64.06 Aligned_cols=68 Identities=19% Similarity=0.258 Sum_probs=55.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEe--CcCCccEEEEEEccHHHHHHHHHhC-CCccc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVK--TQKGFCFGFVEFEEENAVQSAIEAS-PIVIS 355 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~--~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~ 355 (461)
.+.+++||+||+..+.+.+|...|..+|.+..+.|.+. ..+.+|+||++|.+.+.+.+||... ...++
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 45689999999999999999999999998877555432 3337899999999999999999877 44444
No 141
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=91.24 E-value=0.23 Score=47.30 Aligned_cols=76 Identities=30% Similarity=0.431 Sum_probs=58.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc-CCccEEEEEEccHHHHHHHHHhC-----CCcccCceeEEee
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ-KGFCFGFVEFEEENAVQSAIEAS-----PIVISGHRVVVEP 363 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~-k~~g~aFVeF~~~~~a~~Al~~~-----~~~i~g~~i~V~~ 363 (461)
...|||.||..-++-+.|+..|+.||.|....+.++.. +..+-++|+|...-.+.+|+... ..+..++.+-|+.
T Consensus 31 ~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 31 HAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred cceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 37899999999999999999999999998765555543 35556799999998888888765 3344566665654
Q ss_pred cc
Q 012554 364 KK 365 (461)
Q Consensus 364 a~ 365 (461)
..
T Consensus 111 ~e 112 (275)
T KOG0115|consen 111 ME 112 (275)
T ss_pred hh
Confidence 43
No 142
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=90.70 E-value=0.16 Score=54.52 Aligned_cols=74 Identities=19% Similarity=0.161 Sum_probs=57.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEe---CcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEe
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVK---TQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVE 362 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~---~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~ 362 (461)
.-+..|||..||..+++.++-++|...-.|++. |.+- +++.++-|||+|..+++...|+... .+.++.+.|+|.
T Consensus 432 ~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~-I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 432 GAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDF-IELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred CccceEEeccCCccccccchhhhhhhhhhhhhe-eEeccCCcccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 457899999999999999999999887777663 3332 3446788999999977777766554 666777778876
No 143
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=90.68 E-value=3.1 Score=41.83 Aligned_cols=77 Identities=22% Similarity=0.222 Sum_probs=64.1
Q ss_pred CCCCEEEEcCCCCC-CCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecc
Q 012554 288 AEGPSIYLKGLPPS-ATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKK 365 (461)
Q Consensus 288 ~~~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~ 365 (461)
.+++-+.|-+|... +.-+.|-.+|-.||.|.++ .+... ..+-|.|+..|..++++||..+ +..+-|.+|.|...+
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rv--kFmkT-k~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~Sk 361 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERV--KFMKT-KPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSK 361 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeE--EEeec-ccceeEEEcCcHHHHHHHHHHhccCccccceEEEeecc
Confidence 45889999999875 6778899999999999984 33333 4567999999999999999999 888888999998877
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
..
T Consensus 362 Q~ 363 (494)
T KOG1456|consen 362 QN 363 (494)
T ss_pred cc
Confidence 65
No 144
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=89.95 E-value=1.8 Score=37.89 Aligned_cols=73 Identities=18% Similarity=0.144 Sum_probs=54.5
Q ss_pred CCCCCEEEEcCCCCCCC-HHHH---HHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhCCCcccCceeEEe
Q 012554 287 EAEGPSIYLKGLPPSAT-HALL---ENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEASPIVISGHRVVVE 362 (461)
Q Consensus 287 ~~~~~~lfV~nLp~~~t-e~~L---~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~ 362 (461)
+++-.+|.|+-|..++. .+|| ...++.||.|.++.. . ++--|.|.|+|..+|-+|+.+.....-|..+.+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~--c---GrqsavVvF~d~~SAC~Av~Af~s~~pgtm~qCs 157 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTL--C---GRQSAVVVFKDITSACKAVSAFQSRAPGTMFQCS 157 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeee--c---CCceEEEEehhhHHHHHHHHhhcCCCCCceEEee
Confidence 46788999987776654 2444 455678999998432 2 4557999999999999999998667777777777
Q ss_pred ec
Q 012554 363 PK 364 (461)
Q Consensus 363 ~a 364 (461)
|-
T Consensus 158 Wq 159 (166)
T PF15023_consen 158 WQ 159 (166)
T ss_pred cc
Confidence 64
No 145
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=89.77 E-value=0.52 Score=50.53 Aligned_cols=68 Identities=13% Similarity=0.206 Sum_probs=55.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEee
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEP 363 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~ 363 (461)
+..++||+|+...+..+-++.+...||-|..+.. . -|+|++|..+.....|+..+ ...++|..+.+..
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr----~---~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKR----D---KFGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhh----h---hhcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 4679999999999999999999999999875321 1 28999999999999999888 7788877665443
No 146
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=89.41 E-value=0.37 Score=48.51 Aligned_cols=72 Identities=19% Similarity=0.253 Sum_probs=52.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcC-----CccEEEEEEccHHHHHHHHHhCCCcccCceeEEe
Q 012554 291 PSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQK-----GFCFGFVEFEEENAVQSAIEASPIVISGHRVVVE 362 (461)
Q Consensus 291 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k-----~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~ 362 (461)
.-|-|.||...+|.++++.||...|+|..+.|.-..+. ..-.|||.|.+...+..|-..-...+=++.|.|-
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~ 84 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVR 84 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEE
Confidence 47889999999999999999999999987443221111 3346899999999888776554555555555544
No 147
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=89.41 E-value=0.16 Score=55.69 Aligned_cols=77 Identities=14% Similarity=0.081 Sum_probs=60.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEe-CcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeeccc
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVK-TQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKS 366 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~-~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~ 366 (461)
..++||.|+|+..|.+.|+.++.++|.++...+... ..+.+|.+||.|.+...+.+++... ...++-+.+.|....+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 568999999999999999999999999988543322 2347899999999999999988776 5556655555555333
No 148
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=88.67 E-value=1.2 Score=43.21 Aligned_cols=59 Identities=20% Similarity=0.116 Sum_probs=44.7
Q ss_pred HHHHHHHhcCCCeeEeEEEEeCcC---CccEEEEEEccHHHHHHHHHhC-CCcccCceeEEee
Q 012554 305 ALLENEFRKFGTIRAGGIQVKTQK---GFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEP 363 (461)
Q Consensus 305 ~~L~~~F~~~G~i~~~~v~~~~~k---~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~ 363 (461)
+++++...+||.|..|-|..+.+. -.---||+|+..+++-+|+..+ +..|+||.++..+
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 457778889999998755544332 1223599999999999999988 8899999876543
No 149
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=88.05 E-value=5.4 Score=42.11 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=11.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCe
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKFGTI 317 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~G~i 317 (461)
...|+.-++|.+ +..+....|..
T Consensus 314 v~~VI~~~~P~~-----~~~yvqR~GRa 336 (456)
T PRK10590 314 LPHVVNYELPNV-----PEDYVHRIGRT 336 (456)
T ss_pred CCEEEEeCCCCC-----HHHhhhhcccc
Confidence 344554455533 33455555654
No 150
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=87.79 E-value=0.85 Score=47.97 Aligned_cols=69 Identities=12% Similarity=0.198 Sum_probs=51.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhc--CCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC---CCcccCceeEEe
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRK--FGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS---PIVISGHRVVVE 362 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~--~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~---~~~i~g~~i~V~ 362 (461)
..|-|+++-|+..+-.++++.||+. |-++..|..-.. . -.||+|++..+|+.|.+.+ -.+|.|+.|...
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N----~-nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN----D-NWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec----C-ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 4578889999999999999999964 555555433221 1 3699999999999998877 445667766443
No 151
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=87.60 E-value=1.1 Score=49.31 Aligned_cols=12 Identities=25% Similarity=0.266 Sum_probs=6.5
Q ss_pred cHHHHHHHHHhC
Q 012554 339 EENAVQSAIEAS 350 (461)
Q Consensus 339 ~~~~a~~Al~~~ 350 (461)
++.....||...
T Consensus 500 ~~~~~~~~i~~~ 511 (629)
T PRK11634 500 EVRHIVGAIANE 511 (629)
T ss_pred CHHHHHHHHHhh
Confidence 455555566543
No 152
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=87.37 E-value=0.13 Score=56.66 Aligned_cols=75 Identities=16% Similarity=0.209 Sum_probs=57.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcC-CccEEEEEEccHHHHHHHHHhC-CCcccCceeEEe
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQK-GFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVE 362 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k-~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~ 362 (461)
....+||++||...+++.+|+..|..+|.|..|.|.....+ ...|+||.|.+...+-.|+..+ +..|..-.+++.
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 56789999999999999999999999999999666554222 5568999999888888887776 555543333333
No 153
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=87.07 E-value=0.33 Score=50.00 Aligned_cols=75 Identities=17% Similarity=0.195 Sum_probs=56.6
Q ss_pred CCCEEEEcCCCCCC-CHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhCCCcccCceeEEeecccc
Q 012554 289 EGPSIYLKGLPPSA-THALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEPKKST 367 (461)
Q Consensus 289 ~~~~lfV~nLp~~~-te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~a~~~ 367 (461)
+.+.|-+.-+++.. +-++|...|.+||.|..|.|... .-.|.|+|.+..++-.|....+..|+++.|+|.|-.+.
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~----~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS----SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc----hhhheeeeeccccccchhccccceecCceeEEEEecCC
Confidence 34444444445543 56889999999999998655332 23589999999999777766699999999999998873
No 154
>PF13577 SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RFR_A 3B8L_F 2CHC_A 3A76_A 3EF8_B.
Probab=85.76 E-value=9.6 Score=31.70 Aligned_cols=66 Identities=11% Similarity=0.058 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC--CCCcceEEEEEeeee
Q 012554 16 NAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL--HYGEFSAEITTVDAQ 83 (461)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~I~~~d~q 83 (461)
..++..|...++ .+.+.+..+|.+++.+.+.+.. ...+.|.++|.+.+... .+..+.|.+.+....
T Consensus 10 ~~l~~~~~~~~D~~~~~~~~~lft~d~~~~~~~~~--~~~~~G~~~i~~~~~~~~~~~~~~~H~~~~~~v~ 78 (127)
T PF13577_consen 10 RDLIARYARALDTGDWEEWADLFTEDAVFDFPGFG--FGRYRGRDAIRAFLRARFDGFAATRHMVTNPVVD 78 (127)
T ss_dssp HHHHHHHHHHHHTT-HHHHHTTEEEEEEEEETTTC--EEEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHhhCCCHHHHHhccCCcEEEEEeCcc--ccccCCHHHHHHHHHHhcccccceeEEccceEEE
Confidence 466777777787 8899999999999999886521 12688999999999875 333456666655444
No 155
>PF03284 PHZA_PHZB: Phenazine biosynthesis protein A/B; InterPro: IPR004964 The phenazine biosynthesis proteins A and B are involved in the biosynthesis of this antibiotic. Phenazine is a nitrogen-containing heterocyclic molecule with important implications in virulence, competition and biological control.; GO: 0017000 antibiotic biosynthetic process; PDB: 3EX9_A 3JUP_B 3DZL_A 3JUN_A 3JUO_A 3CNM_A 3JUM_B 3JUQ_A 3B4O_A 3B4P_B ....
Probab=84.14 E-value=14 Score=32.37 Aligned_cols=102 Identities=15% Similarity=0.163 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHccCchhhhccccCCcee-eccCCCCcccccccHHHHHH-HHHhCC-CCcc-eEEEEEeeeeeeCC
Q 012554 12 DIVANAFVHQYYLILHQSPQLVHRFYQDISKL-GRPEENGAMSITTTMQAIND-KILALH-YGEF-SAEITTVDAQESYN 87 (461)
Q Consensus 12 ~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~l-~~~~~~~~~~~~~g~~~I~~-~~~~l~-~~~~-~~~I~~~d~q~s~~ 87 (461)
-++-+.=|.||-.+.-+.+-.=|.||.++-+. .|.-..|....+.|.+.+.+ .+.+|. |.|- -+.|.-++.|. .
T Consensus 17 R~~NR~~Ve~Ym~t~g~~RL~Rh~LF~eDG~~glwtTdtG~Piv~~G~~~L~~havwslkcFPDWeW~nv~ifeT~D--P 94 (162)
T PF03284_consen 17 RRINRATVEQYMNTKGQDRLRRHELFTEDGCGGLWTTDTGEPIVIRGRDRLAEHAVWSLKCFPDWEWYNVRIFETQD--P 94 (162)
T ss_dssp HHHHHHHHHHHHC--GGGGGGGGGGEEEEEEEEESS-TTSS-EEEESHHHHHHHHHHHHHHSTT-EEEEEEEEEBSS--T
T ss_pred HHhhHHHHHHHHHcCchhhhhhheeeccCCccccccCCCCceEEEEhHHHHHHHHHHHHHHCCCcEEEEEEeecccC--C
Confidence 34667889999998889999999999988877 67666688889999999988 445552 4322 23343344332 3
Q ss_pred CcEEEEEEEE--EEcCCCC----cceeEEEEEEE
Q 012554 88 GGVIVLVTGY--LTGKDSV----RRKFSQSFFLA 115 (461)
Q Consensus 88 ~~ilv~V~G~--~~~~~~~----~~~F~q~F~L~ 115 (461)
+.+.|-+-|. +...+-+ ..+|.|+|.|.
T Consensus 95 ~~fwVEcdG~G~i~fpGypeg~y~NHfiHsFel~ 128 (162)
T PF03284_consen 95 NHFWVECDGRGKILFPGYPEGYYENHFIHSFELE 128 (162)
T ss_dssp TEEEEEEEEEEEE--TTS--EEEEEEEEEEEEEE
T ss_pred CEEEEEecCccceecCCCCcccceeeeEEEEEee
Confidence 5577777665 4445533 37899999983
No 156
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=83.70 E-value=1.9 Score=44.71 Aligned_cols=12 Identities=0% Similarity=0.061 Sum_probs=6.0
Q ss_pred cHHHHHHHHHhC
Q 012554 339 EENAVQSAIEAS 350 (461)
Q Consensus 339 ~~~~a~~Al~~~ 350 (461)
+.+.++.+....
T Consensus 301 ~~~~l~~~Fk~F 312 (419)
T KOG0116|consen 301 TPAELEEVFKQF 312 (419)
T ss_pred CHHHHHHHHhhc
Confidence 344555555444
No 157
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=82.83 E-value=0.55 Score=46.53 Aligned_cols=80 Identities=20% Similarity=0.351 Sum_probs=58.5
Q ss_pred CCCCEEEEcCCCCCCCHHH-H--HHHHhcCCCeeEeEEEEeC--cC---CccEEEEEEccHHHHHHHHHhC-CCcccCce
Q 012554 288 AEGPSIYLKGLPPSATHAL-L--ENEFRKFGTIRAGGIQVKT--QK---GFCFGFVEFEEENAVQSAIEAS-PIVISGHR 358 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~-L--~~~F~~~G~i~~~~v~~~~--~k---~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~ 358 (461)
.....+||-+|+....++. | .+.|.+||.|..+.+.-.. .. ..+-++|+|...+++..+|... ++.++|+.
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 3456788989987765554 3 3588999999874332222 11 3345899999999999999999 88899998
Q ss_pred eEEeecccc
Q 012554 359 VVVEPKKST 367 (461)
Q Consensus 359 i~V~~a~~~ 367 (461)
|+..+...+
T Consensus 155 lka~~gttk 163 (327)
T KOG2068|consen 155 LKASLGTTK 163 (327)
T ss_pred hHHhhCCCc
Confidence 887776665
No 158
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=81.55 E-value=4.2 Score=32.29 Aligned_cols=54 Identities=15% Similarity=0.244 Sum_probs=39.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS 350 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~ 350 (461)
.+-.||. .|.+....||.++|+.||.|. |....+ .-|||.....+.+..++..+
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~---VsWi~d---TSAfV~l~~r~~~~~v~~~~ 62 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY---VSWIND---TSAFVALHNRDQAKVVMNTL 62 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE---EEEECT---TEEEEEECCCHHHHHHHHHH
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE---EEEEcC---CcEEEEeecHHHHHHHHHHh
Confidence 3455665 899999999999999999987 444433 36899999999999888776
No 159
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=80.77 E-value=1.9 Score=33.34 Aligned_cols=67 Identities=22% Similarity=0.260 Sum_probs=35.9
Q ss_pred EEEEcCC--CCCCCHHHHHHHHhcCCCeeEe---EEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 292 SIYLKGL--PPSATHALLENEFRKFGTIRAG---GIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 292 ~lfV~nL--p~~~te~~L~~~F~~~G~i~~~---~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
+||| |+ -..++..+|-.++...+.|..- .|.+ ...|.||+-.. +.+..++..+ +..++|+.|+|+.+
T Consensus 2 rl~i-n~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I----~~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 2 RLFI-NVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDI----FDNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp EEEE-S-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-----SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred EEEE-EcccccCCCHHHHHHHHHhccCCCHHhEEEEEE----eeeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4555 33 3457889999999876655432 2333 34588999854 5678888887 89999999999864
No 160
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=80.60 E-value=0.52 Score=50.54 Aligned_cols=17 Identities=12% Similarity=0.376 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHc
Q 012554 11 ADIVANAFVHQYYLILH 27 (461)
Q Consensus 11 ~~~vg~~Fv~~YY~~l~ 27 (461)
....+..|+..||..|-
T Consensus 38 ~K~Laaq~I~kffk~FP 54 (556)
T PF05918_consen 38 EKRLAAQFIPKFFKHFP 54 (556)
T ss_dssp HHHHHHHHHHHHHCC-G
T ss_pred HHHHHHHHHHHHHhhCh
Confidence 34577788888876554
No 161
>PF12870 Lumazine_bd: Lumazine-binding domain; InterPro: IPR024267 This entry represents a lumazine-binding domain found in a family of putative lipoproteins from bacteria. Lumazine is a fluorescent accessory protein having 6,7-dimethyl-8-(1'-D-ribityl) lumazine (DMRL) as its authentic chromophore; it modulates the emission of bacterial luciferase to shorter wavelengths with increasing luminous strength.; PDB: 3K7C_C.
Probab=79.03 E-value=13 Score=30.11 Aligned_cols=103 Identities=17% Similarity=0.135 Sum_probs=44.4
Q ss_pred CCCHHHHHHHHHHHHHHHHc-cCchhhhccccCCcee-eccCCCCcccccccHHHHHHHHHhCCCCcceEEEEEeeeeee
Q 012554 8 APTADIVANAFVHQYYLILH-QSPQLVHRFYQDISKL-GRPEENGAMSITTTMQAINDKILALHYGEFSAEITTVDAQES 85 (461)
Q Consensus 8 ~~~~~~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l-~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~I~~~d~q~s 85 (461)
..+|.+| |+.||..|. .+-+....|......- ..... ....-...+...+.........++|..+.....
T Consensus 6 ~~~P~~~----v~~f~~al~~gd~~~a~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 77 (111)
T PF12870_consen 6 SSTPEEV----VKNFFDALKNGDYEKAYAYLSPESREPEKAKE----DFEQFEKQFASEMKKKYKKIGSIKIVEVEENTI 77 (111)
T ss_dssp ---HHHH----HHHHHHHHCTT-HHHHHHTB--TT--SHHHHH----HHHHHHHHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred CCCHHHH----HHHHHHHHHcCCHHHHHHhhCccccchhHHHH----HHHHHHHHHHHHHHHhhhccCceEEEEEEEecc
Confidence 3456777 555555555 6777777777655542 11000 001111111111111111111344444443333
Q ss_pred CCCcEEEEEEEEEEcCCCCcceeEEEEEEEEeCCeEEE
Q 012554 86 YNGGVIVLVTGYLTGKDSVRRKFSQSFFLAPQDKGYFV 123 (461)
Q Consensus 86 ~~~~ilv~V~G~~~~~~~~~~~F~q~F~L~~~~~~y~v 123 (461)
++... |+-.+.+.+..... .+|.|..+++.|+|
T Consensus 78 -g~~A~--V~v~~~~~~g~~~~--~~~~lvk~dg~Wkv 110 (111)
T PF12870_consen 78 -GDTAT--VTVKITYKDGKEKT--FTVPLVKEDGKWKV 110 (111)
T ss_dssp -SSEEE--EEEEEEETTS-EEE--EEEEEEEETTEEEE
T ss_pred -CCEEE--EEEEEEECCCCeeE--EEEEEEEECCEEEe
Confidence 33344 44446666654554 46788889999998
No 162
>COG4875 Uncharacterized protein conserved in bacteria with a cystatin-like fold [Function unknown]
Probab=78.98 E-value=40 Score=28.77 Aligned_cols=111 Identities=15% Similarity=0.130 Sum_probs=67.7
Q ss_pred CCCHHHHHHHHHHHHHHHHccCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC---CCCc-ceEEEEEeeee
Q 012554 8 APTADIVANAFVHQYYLILHQSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL---HYGE-FSAEITTVDAQ 83 (461)
Q Consensus 8 ~~~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l---~~~~-~~~~I~~~d~q 83 (461)
.++-.+|+.-|=+.--+++--+|+++...|.+++.|.-.-.+ ..-..+.+|.+.+... ..++ +.-+..++-|-
T Consensus 33 ~~t~~~vAaLFdrWN~~L~TGdP~kV~anyApDaVLLPT~Sn---~vR~s~~ei~DYF~~FLk~KPqG~IdsR~i~~gcN 109 (156)
T COG4875 33 NVTEREVAALFDRWNAALTTGDPNKVAANYAPDAVLLPTMSN---QVRSSRSEILDYFSHFLKLKPQGYIDSRKITLGCN 109 (156)
T ss_pred CccHHHHHHHHHHHHhhhhcCChHHHHhhcCCceEeeccccc---ccccCHHHHHHHHHHHhccCCcceecceeEEeccc
Confidence 577889999999988888999999999999999988432221 1446677888877643 2221 11111111232
Q ss_pred eeCCCcEEEEEEEEEEcCCCCcceeEEEEEEEEeCCeEEEEcc
Q 012554 84 ESYNGGVIVLVTGYLTGKDSVRRKFSQSFFLAPQDKGYFVLND 126 (461)
Q Consensus 84 ~s~~~~ilv~V~G~~~~~~~~~~~F~q~F~L~~~~~~y~v~nd 126 (461)
.-.+-|..-. ++.|...-.=-=||+-.-+++.|.|.|.
T Consensus 110 ~AlD~GtYTF-----~f~DGs~v~ARYtftY~w~~g~WlI~~H 147 (156)
T COG4875 110 NALDAGTYTF-----IFTDGSNVQARYTFTYSWIDGTWLIVNH 147 (156)
T ss_pred cccccceEEE-----EEcCCcceeEEEEEEEEecCCeEEEEec
Confidence 2233333222 2223333222346777788999999873
No 163
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=78.45 E-value=7.6 Score=38.12 Aligned_cols=69 Identities=19% Similarity=0.362 Sum_probs=48.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhCCCcccCce-eEEee
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEASPIVISGHR-VVVEP 363 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~-i~V~~ 363 (461)
..=+-|-+++.. .-..|-.+|++||.|.+. +.. ..-.+-+|.|.+.-.+++||.+.+..|+|.. |-|..
T Consensus 197 D~WVTVfGFppg-~~s~vL~~F~~cG~Vvkh---v~~-~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 197 DTWVTVFGFPPG-QVSIVLNLFSRCGEVVKH---VTP-SNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKP 266 (350)
T ss_pred cceEEEeccCcc-chhHHHHHHHhhCeeeee---ecC-CCCceEEEEecchhHHHHhhhhcCeeeccceEEeeee
Confidence 344555567655 335567799999999752 222 3345779999999999999999999998764 33444
No 164
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=78.41 E-value=11 Score=28.48 Aligned_cols=54 Identities=17% Similarity=0.267 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEE
Q 012554 301 SATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVV 361 (461)
Q Consensus 301 ~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V 361 (461)
.++-++++..+.+|+-.. |.. + ..|| ||.|.+..+|+++.... +..+.+.+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~~---I~~--d-~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDR---IRD--D-RTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcce---EEe--c-CCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 478899999999997543 332 2 3454 89999999999999887 76666665544
No 165
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=76.18 E-value=0.84 Score=48.96 Aligned_cols=9 Identities=11% Similarity=0.220 Sum_probs=1.6
Q ss_pred eeEEeeccc
Q 012554 358 RVVVEPKKS 366 (461)
Q Consensus 358 ~i~V~~a~~ 366 (461)
.|.+.|...
T Consensus 456 ~itlSWk~~ 464 (556)
T PF05918_consen 456 NITLSWKEA 464 (556)
T ss_dssp ----TTS--
T ss_pred ccceeeeec
Confidence 355555443
No 166
>PRK06958 single-stranded DNA-binding protein; Provisional
Probab=74.13 E-value=8 Score=35.51 Aligned_cols=10 Identities=20% Similarity=0.208 Sum_probs=5.7
Q ss_pred CEEEEcCCCC
Q 012554 291 PSIYLKGLPP 300 (461)
Q Consensus 291 ~~lfV~nLp~ 300 (461)
.-++|++|-.
T Consensus 6 ~V~LiGrLg~ 15 (182)
T PRK06958 6 KVILVGNLGA 15 (182)
T ss_pred EEEEEEEecC
Confidence 3456677743
No 167
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=72.93 E-value=4.7 Score=36.87 Aligned_cols=79 Identities=15% Similarity=0.154 Sum_probs=44.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhc-CCCe---eEeEEEEeC--cC--CccEEEEEEccHHHHHHHHHhC-CCcccCc-
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRK-FGTI---RAGGIQVKT--QK--GFCFGFVEFEEENAVQSAIEAS-PIVISGH- 357 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~-~G~i---~~~~v~~~~--~k--~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~- 357 (461)
....+|.|++||..+|++++.+.+.. ++.. ..+.-.... .+ ...-|||.|.+.+++..-.... ++.+-+.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34679999999999999998886655 4444 332111111 11 2345899999999988888877 6655322
Q ss_pred ----eeEEeeccc
Q 012554 358 ----RVVVEPKKS 366 (461)
Q Consensus 358 ----~i~V~~a~~ 366 (461)
...|+.+.-
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 345555543
No 168
>COG4319 Ketosteroid isomerase homolog [Function unknown]
Probab=64.47 E-value=52 Score=28.72 Aligned_cols=93 Identities=17% Similarity=0.176 Sum_probs=60.1
Q ss_pred cCchhhhccccCCceeecc-CCCCcccccccHHHHHHHHHhCC-CCcceEEEEEeeeeeeCCCcEEEEEEEEEEcCC---
Q 012554 28 QSPQLVHRFYQDISKLGRP-EENGAMSITTTMQAINDKILALH-YGEFSAEITTVDAQESYNGGVIVLVTGYLTGKD--- 102 (461)
Q Consensus 28 ~~p~~l~~fY~~~s~l~~~-~~~~~~~~~~g~~~I~~~~~~l~-~~~~~~~I~~~d~q~s~~~~ilv~V~G~~~~~~--- 102 (461)
.+-+-|.+||.++..+.-. +. ...|.++|.+.+...- .....++.+..+.|-.-. |=+..|++.+.++.
T Consensus 26 ~D~~av~~~YtdDav~f~~~~~-----~~~Gk~~i~k~~~~~~~~~~~~~~f~~~el~v~~~-GD~a~~~~~~~~~~~~~ 99 (137)
T COG4319 26 KDADAVADFYTDDAVVFPPPGL-----QRKGKAAIRKAFEGIFAMGIGPLKFTLEELQVHES-GDVAFVTALLLLTGTKK 99 (137)
T ss_pred ccHHHHHHhcCCceEEecCCCC-----cccCHHHHHHHHHHHHHhccCCCcceeeeeeeecc-CCEEEEEEeeeeeccCC
Confidence 7778899999999987554 33 7889999999987541 111233344445553222 23455666655433
Q ss_pred -CCc--ceeEEEEEEEEeCC-eEEEEcc
Q 012554 103 -SVR--RKFSQSFFLAPQDK-GYFVLND 126 (461)
Q Consensus 103 -~~~--~~F~q~F~L~~~~~-~y~v~nd 126 (461)
.+. ..--=|.+|.++.+ +|+|..|
T Consensus 100 dg~~~~~~~Rat~v~rK~~dg~Wk~~~d 127 (137)
T COG4319 100 DGPPADLAGRATYVFRKEADGGWKLAHD 127 (137)
T ss_pred CCcchhheeeeEEEEEEcCCCCEEEEEe
Confidence 222 45566888888876 9999988
No 169
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=61.28 E-value=4.2 Score=40.21 Aligned_cols=74 Identities=14% Similarity=0.072 Sum_probs=55.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc--CCccEEEEEEccHHHHHHHHHhCC-CcccCceeEEe
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ--KGFCFGFVEFEEENAVQSAIEASP-IVISGHRVVVE 362 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~--k~~g~aFVeF~~~~~a~~Al~~~~-~~i~g~~i~V~ 362 (461)
..+++|++++.+.+.+.++..++..+|.+..+......+ .+++++.+.|...+.+..+|.... ..+.++.+...
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~d 163 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKD 163 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCc
Confidence 367999999999999888888998888765543322222 278999999999999999998873 45555544433
No 170
>PF12642 TpcC: Conjugative transposon protein TcpC; InterPro: IPR024735 This family of bacterial proteins are annotated as conjugative transposon protein TcpC. The transfer clostridial plasmid (tcp) locus is part of some conjugative antibiotic resistance and virulence plasmids. TcpC was one of five genes whose products had low-level sequence identity to Tn916 proteins, having similarity to ORF13 homologues from Tn916, Tn5397, and CW459tet [].; PDB: 3UB1_A.
Probab=58.45 E-value=58 Score=30.71 Aligned_cols=88 Identities=14% Similarity=0.210 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHccC-chhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCCCCcceEEEEEeeeeeeCCCcEE
Q 012554 13 IVANAFVHQYYLILHQS-PQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALHYGEFSAEITTVDAQESYNGGVI 91 (461)
Q Consensus 13 ~vg~~Fv~~YY~~l~~~-p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~I~~~d~q~s~~~~il 91 (461)
.--..|+.+|++..-.. .++|.+|-.+.+.+...+. . +. ..+|..+-.-...++ ..
T Consensus 140 ~~i~~fl~~Ff~aY~t~~~~~L~~y~~~~~~~~l~~~----------------~----~~--~~~v~~~~~~~~~~~-~~ 196 (232)
T PF12642_consen 140 KPIEEFLEQFFKAYLTGNQGDLSYYMKPGAIIGLNGA----------------P----YK--FVKVDDIKVYKTKDK-GR 196 (232)
T ss_dssp HHHHHHHHHHHHHHHHS-HHHHHTTB-TT-----------------------------SE--EEEEEEEEEEEEETT-EE
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHhcCCcccccCCC----------------c----eE--EEeeeeEEeecCCCC-cE
Confidence 45678999999998644 4889888887776633222 1 11 245555544444444 33
Q ss_pred EEEEEEEEcCCCC-cceeEEEEEEE--EeCCeEEEE
Q 012554 92 VLVTGYLTGKDSV-RRKFSQSFFLA--PQDKGYFVL 124 (461)
Q Consensus 92 v~V~G~~~~~~~~-~~~F~q~F~L~--~~~~~y~v~ 124 (461)
+.|. .|++.+.. .....|+|.|. ...++|||.
T Consensus 197 ~~v~-tVt~~~~~t~~~~~~~y~LtL~~~~~~w~V~ 231 (232)
T PF12642_consen 197 VVVQ-TVTFKDPGTKATLTQQYTLTLTKRGGRWYVT 231 (232)
T ss_dssp EEE---EEEEEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred EEEE-EEEEEECCCCcEEEEEEEEEEEEcCCEEEEe
Confidence 3333 34443322 45667777655 457899995
No 171
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=55.62 E-value=53 Score=32.14 Aligned_cols=48 Identities=21% Similarity=0.237 Sum_probs=35.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccH
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEE 340 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~ 340 (461)
...||++||+.++.-.||+..+.+.+.+- +.+.-...++-||+.|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~p---m~iswkg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTP---MSISWKGHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCc---eeEeeecCCcceeEecCCc
Confidence 45699999999999999999998877553 2332222566689999754
No 172
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=54.25 E-value=76 Score=31.80 Aligned_cols=54 Identities=11% Similarity=0.042 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC
Q 012554 12 DIVANAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL 68 (461)
Q Consensus 12 ~~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l 68 (461)
.+.-...|+.||..|+ .+.+.|..++.++..+.+... ...+.|.++|..++..+
T Consensus 213 ~~~~~~~v~~~~~A~~~gD~~~l~~lla~Dv~~~~p~~---~~~~~G~~~v~~~~~~~ 267 (339)
T PRK08241 213 DPEERALLARYVAAFEAYDVDALVALLTEDATWSMPPF---PLWYRGRDAIAAFLAGQ 267 (339)
T ss_pred ChHHHHHHHHHHHHHhcCCHHHHHHHhcCCEEEEcCCC---CCcccCHHHHHHHHHhh
Confidence 3555677999999998 689999999999998877643 22599999999999886
No 173
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=53.90 E-value=17 Score=35.64 Aligned_cols=11 Identities=18% Similarity=0.338 Sum_probs=6.8
Q ss_pred HHHHHHHHHhC
Q 012554 58 MQAINDKILAL 68 (461)
Q Consensus 58 ~~~I~~~~~~l 68 (461)
+.++..++..|
T Consensus 48 ~~~Leq~l~~L 58 (271)
T COG1512 48 RGALEQQLADL 58 (271)
T ss_pred HHHHHHHHHHH
Confidence 45666666666
No 174
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=53.56 E-value=34 Score=31.52 Aligned_cols=60 Identities=23% Similarity=0.163 Sum_probs=39.3
Q ss_pred CHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhCC---CcccCceeEEeeccc
Q 012554 303 THALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEASP---IVISGHRVVVEPKKS 366 (461)
Q Consensus 303 te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~~---~~i~g~~i~V~~a~~ 366 (461)
....|+++|..|+.+..+. .+ ++.+-..|.|.+.++|.+|...+. ..++|..|+|.++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~-~L---~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFS-PL---KSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEE-EE---TTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEE-Ec---CCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 4578999999999887632 12 233346899999999999988863 678899999987754
No 175
>PF07366 SnoaL: SnoaL-like polyketide cyclase; InterPro: IPR009959 This domain is found in SnoaL [] a polyketide cyclase involved in nogalamycin biosynthesis. This domain was formerly known as DUF1486. It adopts a distorted alpha-beta barrel fold []. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalysing intramolecular aldol condensation [].; PDB: 2GEY_C 3F9S_A 2GEX_A 3EHC_B 2F99_D 2F98_D 1SJW_A 3K0Z_B.
Probab=51.64 E-value=62 Score=26.94 Aligned_cols=59 Identities=12% Similarity=0.126 Sum_probs=43.3
Q ss_pred HHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC--CCCcceEEEEEeee
Q 012554 20 HQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL--HYGEFSAEITTVDA 82 (461)
Q Consensus 20 ~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~I~~~d~ 82 (461)
+.|+..++ .+.+.|..||+++..+-.... ....|.+++.+.+..+ -|.+.+++|..+=+
T Consensus 5 ~~~~~~~n~~d~~~~~~~~~~d~~~~~~~~----~~~~G~~~~~~~~~~~~~afPD~~~~i~~~~~ 66 (126)
T PF07366_consen 5 RFYEEVWNRGDLDALDELVAPDVVFHDPGP----GPPVGREGFKEFLKELRAAFPDLRFEIEDVVA 66 (126)
T ss_dssp HHHHHHHHTT-GCHHHGTEEEEEEEEGCTT----TEEEHHHHHHHHHHHHHHHSTTTEEEEEEEEE
T ss_pred HHHHHHHhCCCHHHHHHhcCCCEEEEecCC----CCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEE
Confidence 44555656 579999999999998876653 2788888888888766 46677888776544
No 176
>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=50.64 E-value=1.1e+02 Score=30.43 Aligned_cols=52 Identities=10% Similarity=0.048 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC
Q 012554 14 VANAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL 68 (461)
Q Consensus 14 vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l 68 (461)
.-..-|++||..++ .+.+.|..++.++.++...-. ...+.|.+.|..++..+
T Consensus 205 ~~~~~v~~~~~a~~~gD~~~l~~Lla~Dv~~~~p~~---~~~~~G~~~v~~~~~~~ 257 (324)
T TIGR02960 205 EEQDLLERYIAAFESYDLDALTALLHEDAIWEMPPY---TLWYQGRPAIVGFIHTV 257 (324)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHhcCCeEEEcCCC---CcceeCHHHHHHHHHHh
Confidence 34677999999999 889999999999998876532 23789999999999987
No 177
>PF15601 Imm42: Immunity protein 42
Probab=49.18 E-value=10 Score=33.04 Aligned_cols=67 Identities=13% Similarity=0.321 Sum_probs=49.0
Q ss_pred HHHHHHHHHHc----------cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCCCCcceEEEEEeeeeeeC
Q 012554 17 AFVHQYYLILH----------QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALHYGEFSAEITTVDAQESY 86 (461)
Q Consensus 17 ~Fv~~YY~~l~----------~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~I~~~d~q~s~ 86 (461)
.||..||+++. +-|-.+-+||...=...-. .....=+++|++.+..++.+++...|..++.||.+
T Consensus 16 dfl~sFFsti~~~lE~~~wGskfP~Lm~~LY~g~L~~~~~-----~~A~~eL~~I~~~l~~~~p~~ViWD~~dl~~~ppW 90 (134)
T PF15601_consen 16 DFLHSFFSTISYRLENEGWGSKFPLLMNELYRGYLRYEEL-----EKALKELEEIRKELKKFPPSEVIWDIEDLSKQPPW 90 (134)
T ss_pred HHHHHHHHHHHHHhhccCCCCcchHHHHHHHcCCCCHHHH-----HHHHHHHHHHHHHHhcCChhhheechhhcccCCCC
Confidence 57777777776 3466677777654322211 22556688999999999999889999999999988
Q ss_pred CC
Q 012554 87 NG 88 (461)
Q Consensus 87 ~~ 88 (461)
++
T Consensus 91 g~ 92 (134)
T PF15601_consen 91 GD 92 (134)
T ss_pred cc
Confidence 55
No 178
>PF12287 Caprin-1_C: Cytoplasmic activation/proliferation-associated protein-1 C term; InterPro: IPR022070 This family of proteins is found in eukaryotes. Proteins in this family are typically between 343 and 708 amino acids in length. This family is the C-terminal region of caprin-1. Caprin-1 is a protein involved in regulating cellular proliferation. In mutated phenotypes, the G1 phase of the cell cycle is greatly lengthened, impairing normal proliferation. The C-terminal region of caprin-1 contains RGG motifs which are characteristic of RNA binding domains. It is possible that caprin-1 functions through an RNA binding mechanism.
Probab=48.40 E-value=42 Score=33.15 Aligned_cols=6 Identities=67% Similarity=1.088 Sum_probs=2.3
Q ss_pred CCCCCC
Q 012554 428 GYQRND 433 (461)
Q Consensus 428 g~~~~~ 433 (461)
||+..+
T Consensus 302 gyQq~y 307 (316)
T PF12287_consen 302 GYQQNY 307 (316)
T ss_pred chhhhh
Confidence 344333
No 179
>PRK11901 hypothetical protein; Reviewed
Probab=47.52 E-value=1.9e+02 Score=29.01 Aligned_cols=65 Identities=14% Similarity=0.171 Sum_probs=41.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCC-ccEEEE--EEccHHHHHHHHHhCCCccc
Q 012554 287 EAEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKG-FCFGFV--EFEEENAVQSAIEASPIVIS 355 (461)
Q Consensus 287 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~-~g~aFV--eF~~~~~a~~Al~~~~~~i~ 355 (461)
....++|=|..+. .++.|+.|..+++ +..+.|......+ ..|..| .|.+.++|+.|+..|+..|.
T Consensus 242 p~~~YTLQL~Aas---~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~lq 309 (327)
T PRK11901 242 PASHYTLQLSSAS---RSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAEVQ 309 (327)
T ss_pred CCCCeEEEeecCC---CHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHHHH
Confidence 3667888777664 6788888887775 3333332222222 233322 68899999999999976664
No 180
>COG4907 Predicted membrane protein [Function unknown]
Probab=47.29 E-value=17 Score=37.88 Aligned_cols=36 Identities=25% Similarity=0.307 Sum_probs=21.2
Q ss_pred EEEEEEEEcCCCCcceeEEEEEEEEeCCeEEEEcceEEe
Q 012554 92 VLVTGYLTGKDSVRRKFSQSFFLAPQDKGYFVLNDVFRY 130 (461)
Q Consensus 92 v~V~G~~~~~~~~~~~F~q~F~L~~~~~~y~v~nd~fr~ 130 (461)
|--.|-+....+..+-| |++-.....|+|+||+=.|
T Consensus 105 v~~ig~~~~~~~e~~tf---~~vy~~~~aikV~ndV~~f 140 (595)
T COG4907 105 VYRIGLYSKNYNEVRTF---KFVYTLPEAIKVYNDVAQF 140 (595)
T ss_pred EEEeccccCCCccceEE---EeeeeccceEEEechHHHh
Confidence 44555555444434433 2333457899999998644
No 181
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=44.68 E-value=1e+02 Score=34.11 Aligned_cols=23 Identities=4% Similarity=-0.116 Sum_probs=14.6
Q ss_pred CCCCCCCHHHHHHHHhcCCCeeE
Q 012554 297 GLPPSATHALLENEFRKFGTIRA 319 (461)
Q Consensus 297 nLp~~~te~~L~~~F~~~G~i~~ 319 (461)
+.-|++.++|.+-+....=.+..
T Consensus 6 G~rWDW~~ED~K~VvqRVL~L~S 28 (828)
T PF04094_consen 6 GERWDWGPEDFKMVVQRVLNLDS 28 (828)
T ss_pred CCcCCCCHHHHHHHHHHHhccch
Confidence 34577888888777765434443
No 182
>PF08863 YolD: YolD-like protein; InterPro: IPR014962 These proteins are functionally uncharacterised. However it has been predicted that these proteins are functionally equivalent to the UmuD subunit of polymerase V from Gram-negative bacteria [].
Probab=43.89 E-value=70 Score=25.22 Aligned_cols=73 Identities=19% Similarity=0.271 Sum_probs=47.8
Q ss_pred CchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCCCCcceEEEEEeeeeeeCCCcEEEEEEEEEEcCCCCccee
Q 012554 29 SPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALHYGEFSAEITTVDAQESYNGGVIVLVTGYLTGKDSVRRKF 108 (461)
Q Consensus 29 ~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~I~~~d~q~s~~~~ilv~V~G~~~~~~~~~~~F 108 (461)
+.+.|++++.+...+..+.- .-.-.+.|+.+|+..--.++.+.|+.++ +|.+..++|.|..=+. .
T Consensus 4 H~e~L~~~~~e~~k~~kp~L-----de~~leei~~~l~~a~~~~~~v~ity~~------~g~~~~~~G~I~~id~----~ 68 (92)
T PF08863_consen 4 HKEALRELIKEQNKVEKPEL-----DEQQLEEINEKLSEAYQENQPVTITYYE------DGYYQSVTGTIHKIDE----I 68 (92)
T ss_pred HHHHHHHHHHHhcccCCCCC-----cHHHHHHHHHHHHHHhcCCCEEEEEEEE------CCeeEEEEEEEEEEcC----C
Confidence 45667777776666554433 2234778888887544445788887766 6799999999976443 2
Q ss_pred EEEEEEEE
Q 012554 109 SQSFFLAP 116 (461)
Q Consensus 109 ~q~F~L~~ 116 (461)
.+++.|.-
T Consensus 69 ~~~l~~~~ 76 (92)
T PF08863_consen 69 NRTLKLKD 76 (92)
T ss_pred CCEEEEEe
Confidence 34555554
No 183
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=43.84 E-value=1.9e+02 Score=24.17 Aligned_cols=66 Identities=12% Similarity=0.010 Sum_probs=41.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCC-CeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCccc
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKFG-TIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVIS 355 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~ 355 (461)
...+.+..+|+.++.++|..+...+- .|..+.|..+...++..+.+.|.+.+.|+.-.... |..++
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 33444445566666677766555543 34443332222226677899999999999988776 66665
No 184
>PF11533 DUF3225: Protein of unknown function (DUF3225); InterPro: IPR024507 This family of proteins has no known function.; PDB: 2OWP_A 2RCD_B.
Probab=43.32 E-value=2.1e+02 Score=24.54 Aligned_cols=115 Identities=14% Similarity=0.055 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHccCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCCCCcceEEEEEeeeeeeCCCcE
Q 012554 11 ADIVANAFVHQYYLILHQSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALHYGEFSAEITTVDAQESYNGGV 90 (461)
Q Consensus 11 ~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~I~~~d~q~s~~~~i 90 (461)
..+|-..|-..+--++.++-+.|-.||-++..-.+-|-. ....|.++|..+-..-+-......|..+-......+ +
T Consensus 9 ~aev~aaf~~YE~AL~~nDv~~Ld~lFw~~p~TvRyg~~---E~LyG~~aI~aFR~~R~~~~~~R~l~~~~itt~G~d-~ 84 (125)
T PF11533_consen 9 VAEVTAAFDRYERALMANDVDALDALFWDDPRTVRYGAG---ENLYGHDAIRAFRAARPGGGPARTLERTVITTFGRD-F 84 (125)
T ss_dssp HHHHHHHHHHHHHHHHCT-HHHHHHCB--STT-EEEETT---EEEESHHHHHHHHHHS--TTTT-EEEEEEEEEETTT-E
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHhccCCceEEECCC---ccccCHHHHHHHHhcCCCCCCCcEEEEEEEEEecCc-e
Confidence 356777776655556667789999988877765554532 378999999999887754444556666555555555 2
Q ss_pred EEEEEEEEEcCCCCc-ceeEEEEEEEEeCCeEEEEcceEEeec
Q 012554 91 IVLVTGYLTGKDSVR-RKFSQSFFLAPQDKGYFVLNDVFRYVD 132 (461)
Q Consensus 91 lv~V~G~~~~~~~~~-~~F~q~F~L~~~~~~y~v~nd~fr~~~ 132 (461)
-+|+-++...+... =+=+|+++- .+.+|-|..--..+++
T Consensus 85 -A~v~tef~r~~~~~~GRQsQtWvr--~~~gWrIvaAHVS~~~ 124 (125)
T PF11533_consen 85 -ATVSTEFRRDGSGRIGRQSQTWVR--FPDGWRIVAAHVSLMD 124 (125)
T ss_dssp -EEEEEEEEETTECCEEEEEEEEEE--ETTEEEEEEEEEEEE-
T ss_pred -EEEEEEEEECCCCceeEeEEEEEE--CCCCEEEEEEEEeecc
Confidence 23444455544322 233566554 5679998765554443
No 185
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=43.23 E-value=50 Score=26.24 Aligned_cols=48 Identities=15% Similarity=0.150 Sum_probs=39.5
Q ss_pred HHHHccCchhhhccccCCc-eeeccCCCCcccccccHHHHHHHHHhCCC
Q 012554 23 YLILHQSPQLVHRFYQDIS-KLGRPEENGAMSITTTMQAINDKILALHY 70 (461)
Q Consensus 23 Y~~l~~~p~~l~~fY~~~s-~l~~~~~~~~~~~~~g~~~I~~~~~~l~~ 70 (461)
|+.|.+.-..|.+|..+.. +|-|.|++|..-++..++++.+.|.-+..
T Consensus 22 ~e~L~~~v~~~c~~~~~q~ft~kw~DEEGDp~tiSS~~EL~EA~rl~~~ 70 (83)
T cd06404 22 LEELCNEVRDMCRFHNDQPFTLKWIDEEGDPCTISSQMELEEAFRLYEL 70 (83)
T ss_pred HHHHHHHHHHHhCCCCCCcEEEEEECCCCCceeecCHHHHHHHHHHHHh
Confidence 6677777788889988766 89999999998889999999998875543
No 186
>COG3631 Ketosteroid isomerase-related protein [General function prediction only]
Probab=42.62 E-value=2.2e+02 Score=24.60 Aligned_cols=69 Identities=12% Similarity=0.060 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCc-ccccccHHHHHHHHHhCC--CCcceEEEEEeeee
Q 012554 15 ANAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGA-MSITTTMQAINDKILALH--YGEFSAEITTVDAQ 83 (461)
Q Consensus 15 g~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~-~~~~~g~~~I~~~~~~l~--~~~~~~~I~~~d~q 83 (461)
.+.-|++||..|. .+-+.|..++.++-...+.+.+-. .....|.+.+...+..++ +..+.+.+..+.+.
T Consensus 6 ~~~~v~~~f~a~~~GD~~~~~~l~a~D~v~~~p~~~~~~~~~~~g~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 78 (133)
T COG3631 6 NTDLVRRYFAALSRGDLDGLLALLAEDVVWEVPGTPPLSGTFRGGVAIRRDVFALLPRLIEDGRFTVETVYVS 78 (133)
T ss_pred hhhHHHHHHHHHhcCCHHHHHhhccCceEEEeeCCCCCccccccchhhhhHHhhhChhhcccccccceEEEEc
Confidence 3566899999998 678889999999998887775422 333446666677777664 54566666665553
No 187
>COG5073 VID24 Vacuolar import and degradation protein [Intracellular trafficking and secretion]
Probab=42.46 E-value=9.2 Score=36.29 Aligned_cols=75 Identities=21% Similarity=0.196 Sum_probs=57.5
Q ss_pred HHHHHHHHHHccCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCCCCcceEEEEEeeeeeeCCCcEEEEEEE
Q 012554 17 AFVHQYYLILHQSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALHYGEFSAEITTVDAQESYNGGVIVLVTG 96 (461)
Q Consensus 17 ~Fv~~YY~~l~~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~I~~~d~q~s~~~~ilv~V~G 96 (461)
.-|..||.+-.+++.-+...|...+-+.++|. .+.|.+ |..++.=...++|.+||.+.-.+- -|=+++|
T Consensus 52 ~~ve~~~~~~~kn~~~~~~s~~~~~~~Lr~G~-----qF~G~Q-----is~~~~~~v~v~i~~Vdl~~kd~~-sl~~l~G 120 (272)
T COG5073 52 KKVETYYMIRHKNKRRLFSSYTRRSGFLRNGA-----QFGGVQ-----ISGYPPLTVEVNIDTVDLPKKDDY-SLPHLCG 120 (272)
T ss_pred eeEeecceecccCceEeeeeccchhhhccCcc-----ccccEe-----ccCCcceEEEEEEEEEeccccccc-cccceee
Confidence 34677888888999999999999888888886 677776 555554457889999999883333 3488999
Q ss_pred EEEcCC
Q 012554 97 YLTGKD 102 (461)
Q Consensus 97 ~~~~~~ 102 (461)
.|.+..
T Consensus 121 ~l~i~~ 126 (272)
T COG5073 121 TLNIQN 126 (272)
T ss_pred EEEEec
Confidence 987654
No 188
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=41.38 E-value=1.7e+02 Score=31.42 Aligned_cols=12 Identities=8% Similarity=0.108 Sum_probs=9.1
Q ss_pred hCCCcccCceeE
Q 012554 349 ASPIVISGHRVV 360 (461)
Q Consensus 349 ~~~~~i~g~~i~ 360 (461)
.++....|+.|+
T Consensus 425 iLGLn~~Gqsir 436 (582)
T PF03276_consen 425 ILGLNARGQSIR 436 (582)
T ss_pred HhCccccccccc
Confidence 347778888888
No 189
>PF05941 Chordopox_A20R: Chordopoxvirus A20R protein; InterPro: IPR010267 This family consists of several Chordopoxvirus A20R proteins. The A20R protein is required for DNA replication, is associated with the processive form of the viral DNA polymerase, and directly interacts with the viral proteins encoded by the D4R, D5R, and H5R open reading frames. A20R may contribute to the assembly or stability of the multiprotein DNA replication complex [].
Probab=40.32 E-value=1.2e+02 Score=30.60 Aligned_cols=100 Identities=16% Similarity=0.180 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHccCchhh-hccccCCceeeccCCCCcccccccHHHHHHHHHhCCCCcceEEEEEeeeeeeCCCc---EE
Q 012554 16 NAFVHQYYLILHQSPQLV-HRFYQDISKLGRPEENGAMSITTTMQAINDKILALHYGEFSAEITTVDAQESYNGG---VI 91 (461)
Q Consensus 16 ~~Fv~~YY~~l~~~p~~l-~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~I~~~d~q~s~~~~---il 91 (461)
..|-+.||..|+..=... ..||...=++...|.. .-.|.++ ++.+-+.|++++--...+|. .+
T Consensus 173 ~~F~~~dY~~l~~~f~~~~~~f~~~s~c~ik~G~~--------~R~viDf-----~~~~y~~Vk~I~Le~i~~n~~~P~i 239 (334)
T PF05941_consen 173 TIFTEEDYDALEAYFLKIMDGFYINSLCCIKEGVS--------RRNVIDF-----YKKEYVCVKSIELEQIGDNRFLPKI 239 (334)
T ss_pred cccchhHHHHHHHHHHhhhhcccceeEEEEecCcc--------hhhhhhh-----cccceEEEEEEEEEEecCCeeeeEE
Confidence 569999999999766655 5666665578887751 2234433 44567788888888877774 34
Q ss_pred EEEEEEEE-cCC-C---CcceeEEEEEEEEeCCeEEEEcceE
Q 012554 92 VLVTGYLT-GKD-S---VRRKFSQSFFLAPQDKGYFVLNDVF 128 (461)
Q Consensus 92 v~V~G~~~-~~~-~---~~~~F~q~F~L~~~~~~y~v~nd~f 128 (461)
|+-.|... .+| + ..|-+.-+||....-+.|.|+.|--
T Consensus 240 iT~~g~~vlvrdv~hLi~sr~~vgsFV~Vkkk~~~~iL~d~~ 281 (334)
T PF05941_consen 240 ITKSGDRVLVRDVDHLIRSRARVGSFVVVKKKKNFLILVDNA 281 (334)
T ss_pred EeecCCEEEEcchhHHhHhhhccceEEEEEEeceEEEEccCc
Confidence 55555533 444 2 2478899999999989999987643
No 190
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=39.96 E-value=20 Score=40.08 Aligned_cols=73 Identities=16% Similarity=0.205 Sum_probs=55.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcc--cCceeEEeecccc
Q 012554 291 PSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVI--SGHRVVVEPKKST 367 (461)
Q Consensus 291 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i--~g~~i~V~~a~~~ 367 (461)
.+.++-|..-..+-..|..+|.+||.+...+. -+....+.|+|.+.+.+-.|++++ ++++ .|-..+|.+++.-
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wt----lr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWT----LRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhhee----cccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 34555566666778889999999999987422 123346899999999999999998 6654 4778899998875
No 191
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=39.38 E-value=42 Score=35.76 Aligned_cols=79 Identities=11% Similarity=0.129 Sum_probs=47.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHh-cCCCeeEeEEEEe--CcCCccEEEEEEccHHHHHHHHHhC-CCc---cc-CceeE
Q 012554 289 EGPSIYLKGLPPSATHALLENEFR-KFGTIRAGGIQVK--TQKGFCFGFVEFEEENAVQSAIEAS-PIV---IS-GHRVV 360 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~-~~G~i~~~~v~~~--~~k~~g~aFVeF~~~~~a~~Al~~~-~~~---i~-g~~i~ 360 (461)
..+++-|+|++...|-..|.+.-. ..|.-.-+.+.++ +.+..|||||-|-+++++....++. +.. |+ .+.+.
T Consensus 387 ~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~ 466 (549)
T KOG4660|consen 387 PRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIAS 466 (549)
T ss_pred chhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeee
Confidence 345666777776666555554432 2333322223333 2237899999999999999988887 543 33 34456
Q ss_pred Eeecccc
Q 012554 361 VEPKKST 367 (461)
Q Consensus 361 V~~a~~~ 367 (461)
|-+++-.
T Consensus 467 itYArIQ 473 (549)
T KOG4660|consen 467 ITYARIQ 473 (549)
T ss_pred eehhhhh
Confidence 6666643
No 192
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=39.23 E-value=63 Score=27.36 Aligned_cols=46 Identities=17% Similarity=0.281 Sum_probs=26.2
Q ss_pred CHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEc-cHHHHHHHHHh
Q 012554 303 THALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFE-EENAVQSAIEA 349 (461)
Q Consensus 303 te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~-~~~~a~~Al~~ 349 (461)
+.+.|++.|..|..++- ..........++++|+|. +......|+..
T Consensus 30 ~~~~l~~~l~~f~p~kv-~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~l 76 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLKV-KPLYGKQGHTGFAIVEFNKDWSGFKNAMRL 76 (116)
T ss_dssp -SHHHHHHHHH---SEE-EEEEETTEEEEEEEEE--SSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCcee-EECcCCCCCcEEEEEEECCChHHHHHHHHH
Confidence 55789999999988863 222222226789999996 45666666544
No 193
>smart00593 RUN domain involved in Ras-like GTPase signaling.
Probab=36.94 E-value=47 Score=24.60 Aligned_cols=43 Identities=16% Similarity=0.375 Sum_probs=31.8
Q ss_pred HHHHHHHHHHccCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC
Q 012554 17 AFVHQYYLILHQSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL 68 (461)
Q Consensus 17 ~Fv~~YY~~l~~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l 68 (461)
.-+.+|...|..+.+.+.+||.+.|.|.-.+ +.+.+...+..|
T Consensus 12 ~~L~~~l~~l~~~~~~~~~~Y~~~A~l~~~~---------~~~~l~~~L~~L 54 (64)
T smart00593 12 KLLSSWLNLLLSDEELLSKYYEPWAFLRDPE---------EGEQLLGLLVGL 54 (64)
T ss_pred hHHHHHHHHHHhChHHHHHhCCCCceeeChh---------HHHHHHHHHhCc
Confidence 4467899999999999999999999886432 244455556555
No 194
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.31 E-value=1.4e+02 Score=32.27 Aligned_cols=74 Identities=15% Similarity=0.184 Sum_probs=54.2
Q ss_pred CCCEEEEcCCCCC-CCHHHHHHHHhcC----CCeeEeEEEEe--------------C-----------------------
Q 012554 289 EGPSIYLKGLPPS-ATHALLENEFRKF----GTIRAGGIQVK--------------T----------------------- 326 (461)
Q Consensus 289 ~~~~lfV~nLp~~-~te~~L~~~F~~~----G~i~~~~v~~~--------------~----------------------- 326 (461)
..++|-|.||.|+ +...+|.-+|+.| |.|.+|.|... .
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 4689999999987 7788999888765 57777655321 0
Q ss_pred -----------cC-CccEEEEEEccHHHHHHHHHhC-CCcccCceeEEe
Q 012554 327 -----------QK-GFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVE 362 (461)
Q Consensus 327 -----------~k-~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~ 362 (461)
++ ..-||.|+|++.+.|.+..+.+ |+.+...-..+.
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~D 301 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLD 301 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceee
Confidence 00 1246899999999999999998 998875444443
No 195
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=32.86 E-value=10 Score=38.54 Aligned_cols=64 Identities=11% Similarity=0.055 Sum_probs=48.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhCCCccc
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEASPIVIS 355 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~~~~i~ 355 (461)
..+|+|.+|...+...++-++|..+|.+.+..+.-.. ...+|.++|....+...||..++..+.
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~--~s~~c~~sf~~qts~~halr~~gre~k 214 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTASKS--RSSSCSHSFRKQTSSKHALRSHGRERK 214 (479)
T ss_pred HhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccC--CCcchhhhHhhhhhHHHHHHhcchhhh
Confidence 3689999999999999999999999999864332222 334567999988888888887755543
No 196
>PF12642 TpcC: Conjugative transposon protein TcpC; InterPro: IPR024735 This family of bacterial proteins are annotated as conjugative transposon protein TcpC. The transfer clostridial plasmid (tcp) locus is part of some conjugative antibiotic resistance and virulence plasmids. TcpC was one of five genes whose products had low-level sequence identity to Tn916 proteins, having similarity to ORF13 homologues from Tn916, Tn5397, and CW459tet [].; PDB: 3UB1_A.
Probab=32.54 E-value=84 Score=29.61 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=25.0
Q ss_pred HHHHHHHHHHH-----HHccCchhhhccccCCceeeccC
Q 012554 14 VANAFVHQYYL-----ILHQSPQLVHRFYQDISKLGRPE 47 (461)
Q Consensus 14 vg~~Fv~~YY~-----~l~~~p~~l~~fY~~~s~l~~~~ 47 (461)
.+..||..||+ ....+.+.|.+||.....+...+
T Consensus 2 fa~~Fv~~Y~t~~~~~~~~~r~~~L~~y~~~~~~~~~~~ 40 (232)
T PF12642_consen 2 FAQDFVKEYLTKSDDEAPEEREARLAPYLTSDLDLLNQG 40 (232)
T ss_dssp HHHHHHHHHT--B-TTGHHHHHHHHTTTS-HHHHHHH--
T ss_pred HHHHHHHHHcCCCCccChHHHHHHHHHHhcccccccCcc
Confidence 47899999999 77889999999998776654443
No 197
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=32.54 E-value=85 Score=23.49 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=14.8
Q ss_pred HHHHHHHhcCCCeeEeEE
Q 012554 305 ALLENEFRKFGTIRAGGI 322 (461)
Q Consensus 305 ~~L~~~F~~~G~i~~~~v 322 (461)
++||++|+.+|.|.-+-|
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999986433
No 198
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=32.29 E-value=1.1e+02 Score=32.89 Aligned_cols=10 Identities=40% Similarity=0.368 Sum_probs=6.3
Q ss_pred cceeEEEEEE
Q 012554 105 RRKFSQSFFL 114 (461)
Q Consensus 105 ~~~F~q~F~L 114 (461)
.+.|+|-|.=
T Consensus 164 r~~l~qk~eD 173 (648)
T KOG2295|consen 164 RRALYQKFED 173 (648)
T ss_pred HHHHHHHhhh
Confidence 3477777653
No 199
>PF02759 RUN: RUN domain; InterPro: IPR004012 This domain is present in several proteins that are linked to the functions of GTPases in the Rap and Rab families. They could therefore play important roles in multiple Ras-like GTPase signalling pathways.; PDB: 3CWZ_B 2CXF_A 2DWK_A 2DWG_A 2CXL_A.
Probab=29.85 E-value=38 Score=28.67 Aligned_cols=48 Identities=21% Similarity=0.391 Sum_probs=33.4
Q ss_pred HHHHHHHH---------HHHHHHHccCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC
Q 012554 12 DIVANAFV---------HQYYLILHQSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL 68 (461)
Q Consensus 12 ~~vg~~Fv---------~~YY~~l~~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l 68 (461)
..-++.|| .+|...|..+++.|.+||.+.|.|...+. .+.|...+..|
T Consensus 66 ~gk~ra~Ir~aLn~~~L~~~l~~l~~~~~~l~~~Y~~~A~l~~~~~---------~~~l~~~L~~L 122 (133)
T PF02759_consen 66 DGKFRAWIRLALNEKCLSSWLQLLLSDPKLLRKYYEPWAFLRDPEL---------REQLLSLLSGL 122 (133)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHCTTHHHHCCCB-TTSCTTSHHH---------HHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHChHHHHHHHHHhcchHHcCccCCcceeeCcch---------HHHHHHHHhhh
Confidence 45556665 45888999999999999999998865432 24555555555
No 200
>PRK10905 cell division protein DamX; Validated
Probab=28.01 E-value=6.3e+02 Score=25.40 Aligned_cols=65 Identities=11% Similarity=0.120 Sum_probs=42.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCc-cEEE--EEEccHHHHHHHHHhCCCcccC
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGF-CFGF--VEFEEENAVQSAIEASPIVISG 356 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~-g~aF--VeF~~~~~a~~Al~~~~~~i~g 356 (461)
...++|=|..+. +.+.|++|..+.| +....+......++ -|-. =.|.+.++|++||..|+..|..
T Consensus 245 a~~YTLQL~A~S---s~~~l~~fakKlg-L~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa~vQa 312 (328)
T PRK10905 245 SSHYTLQLSSSS---NYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPADVQA 312 (328)
T ss_pred CCceEEEEEecC---CHHHHHHHHHHcC-CCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCHHHHh
Confidence 556888887775 6788888888775 33222222222233 3322 2688999999999999776643
No 201
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=27.72 E-value=62 Score=26.03 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=24.2
Q ss_pred EEEEEccHHHHHHHHHhC--CCcccCceeEEee
Q 012554 333 GFVEFEEENAVQSAIEAS--PIVISGHRVVVEP 363 (461)
Q Consensus 333 aFVeF~~~~~a~~Al~~~--~~~i~g~~i~V~~ 363 (461)
|+|+|.+...|++.+..- ...+++..+.|.-
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v 33 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKV 33 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEE
Confidence 579999999999998876 5566776666653
No 202
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=26.92 E-value=3e+02 Score=21.30 Aligned_cols=62 Identities=18% Similarity=0.164 Sum_probs=42.1
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-------CCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhCCCcc
Q 012554 293 IYLKGLPPSATHALLENEFRK-------FGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEASPIVI 354 (461)
Q Consensus 293 lfV~nLp~~~te~~L~~~F~~-------~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~~~~i 354 (461)
|...+||..+|.++|.++..+ +..|..+.-.+..++.+.||+.+=.+.+.+.++-+..|+-.
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~aG~p~ 71 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHARRAGLPA 71 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHHHcCCCc
Confidence 456788888899988776643 43455544444445577888888889998888776655443
No 203
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.59 E-value=2.8e+02 Score=24.65 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=39.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcC---CCeeEeEEEEeCcC-----------Ccc-EEEEEEccHHHHH
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKF---GTIRAGGIQVKTQK-----------GFC-FGFVEFEEENAVQ 344 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~---G~i~~~~v~~~~~k-----------~~g-~aFVeF~~~~~a~ 344 (461)
.+..+||++-+...+++++.++..++- ++++.+.+-+..++ .+. |-+|.|++-....
T Consensus 85 kd~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~lk 156 (161)
T COG5353 85 KDDGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKELK 156 (161)
T ss_pred CCCCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchhhh
Confidence 445899999999999999999998765 44555443332222 233 8899998866543
No 204
>PF06851 DUF1247: Protein of unknown function (DUF1247); InterPro: IPR009657 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf2; it is a family of uncharacterised viral proteins.
Probab=26.03 E-value=27 Score=30.37 Aligned_cols=42 Identities=24% Similarity=0.363 Sum_probs=30.7
Q ss_pred HHHHHHHHHHccCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCCCC
Q 012554 17 AFVHQYYLILHQSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALHYG 71 (461)
Q Consensus 17 ~Fv~~YY~~l~~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~ 71 (461)
+||+.||+.|.- .|+...+.+... ..+|-+.|.+.+.+-++.
T Consensus 93 S~VElYY~yLs~------~~wk~~a~~~l~-------dLTgF~s~~~LL~~Yny~ 134 (148)
T PF06851_consen 93 SFVELYYTYLSV------DFWKITAKRVLR-------DLTGFESLKDLLTHYNYE 134 (148)
T ss_pred hhHHHHHHHHcc------cccHHHHHHHHH-------HhhCcccHHHHHHHcCCC
Confidence 799999999985 344445555443 467788899999888775
No 205
>COG4907 Predicted membrane protein [Function unknown]
Probab=25.96 E-value=64 Score=33.79 Aligned_cols=19 Identities=5% Similarity=0.198 Sum_probs=9.2
Q ss_pred EEeCCeEEEEcceEEeecC
Q 012554 115 APQDKGYFVLNDVFRYVDD 133 (461)
Q Consensus 115 ~~~~~~y~v~nd~fr~~~~ 133 (461)
.+.+.+|+-.-|++.+-++
T Consensus 99 ~d~g~gv~~ig~~~~~~~e 117 (595)
T COG4907 99 TDEGDGVYRIGLYSKNYNE 117 (595)
T ss_pred ccccceEEEeccccCCCcc
Confidence 3444555555555544333
No 206
>COG3266 DamX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.16 E-value=6.9e+02 Score=24.51 Aligned_cols=64 Identities=11% Similarity=0.129 Sum_probs=38.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEE---EEccHHHHHHHHHhCCCccc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFV---EFEEENAVQSAIEASPIVIS 355 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFV---eF~~~~~a~~Al~~~~~~i~ 355 (461)
..+++|-|.... ..+.|..|-++.+ +..+.+.-....++-+-.| .|.+.++|.+|+..|+.++.
T Consensus 209 ~~~yTLQl~a~~---s~~nv~~fa~k~~-l~~~~vy~t~rnG~pWYvv~~G~YatrqeA~~AvstLPa~vQ 275 (292)
T COG3266 209 SSHYTLQLSASG---SYDNVNGFAKKQN-LKGYVVYETTRNGKPWYVVVYGNYATRQEAKAAVSTLPADVQ 275 (292)
T ss_pred CCceEEEEeccc---chHHHHHHHHhcC-CCceEEeEeecCCceeEEEEecCcccHHHHHHHHhhCcHhHh
Confidence 557888776654 6677777666653 2222222222223333233 56789999999999876664
No 207
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=24.02 E-value=2.3e+02 Score=22.11 Aligned_cols=60 Identities=13% Similarity=0.083 Sum_probs=37.9
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcC-CccEEEEEEccHHHHHHHHHhCC
Q 012554 292 SIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQK-GFCFGFVEFEEENAVQSAIEASP 351 (461)
Q Consensus 292 ~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k-~~g~aFVeF~~~~~a~~Al~~~~ 351 (461)
.-|+-.+..+++..+++..++.+-.|+-..|.....+ ..--|||++.....|...-..+|
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~g 75 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRLG 75 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhhc
Confidence 3456667889999999999987433443333332222 33348999988777776544433
No 208
>KOG2044 consensus 5'-3' exonuclease HKE1/RAT1 [Replication, recombination and repair; RNA processing and modification]
Probab=22.38 E-value=3e+02 Score=31.14 Aligned_cols=31 Identities=13% Similarity=-0.120 Sum_probs=21.7
Q ss_pred cccHHHHHHHHHhC---CCC--cceEEEEEeeeeee
Q 012554 55 TTTMQAINDKILAL---HYG--EFSAEITTVDAQES 85 (461)
Q Consensus 55 ~~g~~~I~~~~~~l---~~~--~~~~~I~~~d~q~s 85 (461)
-.|-..|.++|.+. |-- +.+|+|..+|+-.+
T Consensus 202 GEGEHKIM~yIR~QR~~P~~dPNT~HclyGlDADLI 237 (931)
T KOG2044|consen 202 GEGEHKIMSYIRSQRAQPGYDPNTHHCLYGLDADLI 237 (931)
T ss_pred CcchhHHHHHHHHccCCCCCCCCceeeeecCCccce
Confidence 35778899999754 211 45888988887654
No 209
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=21.88 E-value=3.5e+02 Score=30.65 Aligned_cols=14 Identities=29% Similarity=0.323 Sum_probs=9.3
Q ss_pred HHHHHHccCchhhh
Q 012554 21 QYYLILHQSPQLVH 34 (461)
Q Consensus 21 ~YY~~l~~~p~~l~ 34 (461)
|+-+.|.++|+.|.
T Consensus 310 q~INal~t~p~dld 323 (1102)
T KOG1924|consen 310 QFINALVTSPSDLD 323 (1102)
T ss_pred HHHHHhcCCHHHhh
Confidence 46677777777653
No 210
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=21.69 E-value=1.1e+03 Score=25.78 Aligned_cols=11 Identities=18% Similarity=0.368 Sum_probs=5.8
Q ss_pred HHHHHhcCCCe
Q 012554 307 LENEFRKFGTI 317 (461)
Q Consensus 307 L~~~F~~~G~i 317 (461)
+..+....|..
T Consensus 338 ~~~yvqRiGRa 348 (572)
T PRK04537 338 AEDYVHRIGRT 348 (572)
T ss_pred HHHHhhhhccc
Confidence 44455555654
No 211
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=21.59 E-value=2.2e+02 Score=30.94 Aligned_cols=78 Identities=14% Similarity=0.137 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHHHHHccCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC-----CCCcceEEEEEeeee
Q 012554 9 PTADIVANAFVHQYYLILHQSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL-----HYGEFSAEITTVDAQ 83 (461)
Q Consensus 9 ~~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l-----~~~~~~~~I~~~d~q 83 (461)
.++.+|+.+|++- ....+++.|..||+..==..|.+. + ....-+.|.++-..+ |. ++.+-+..||+|
T Consensus 277 ~sw~~ia~~~l~A---~~~gd~~~lk~f~N~~Lgep~~~~-~---~~~~~~~L~~rre~y~~~~vP~-~v~~ltagVDvQ 348 (557)
T PF05876_consen 277 VSWAEIAREFLEA---ERKGDPEKLKTFVNTVLGEPWEDK-G---EAPDWEELLARREDYPRGEVPD-GVLFLTAGVDVQ 348 (557)
T ss_pred CCHHHHHHHHHhh---hccCCHHHhhheehhccccCcccc-c---cccchHHHHHhhcccccccCCC-CceEEEEEEEec
Confidence 5889999999998 566899999999987665566543 2 222333444443333 22 234444467777
Q ss_pred eeCCCcEEEEEEEE
Q 012554 84 ESYNGGVIVLVTGY 97 (461)
Q Consensus 84 ~s~~~~ilv~V~G~ 97 (461)
++.+.+.|.|-
T Consensus 349 ---~~rle~~v~gw 359 (557)
T PF05876_consen 349 ---DDRLEVEVVGW 359 (557)
T ss_pred ---CCEEEEEEEEE
Confidence 33566666654
No 212
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.58 E-value=1.7e+02 Score=30.16 Aligned_cols=55 Identities=13% Similarity=0.175 Sum_probs=40.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHh
Q 012554 291 PSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEA 349 (461)
Q Consensus 291 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~ 349 (461)
+-|-|-++|.....+||-..|..|+. +.|+|.+..+ ..+|-.|.+...|..||-.
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~-kgfdIkWvDd---thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQN-KGFDIKWVDD---THALAVFSSVNRAAEALTL 446 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhc-CCceeEEeec---ceeEEeecchHHHHHHhhc
Confidence 45777888888777888889999875 3344544433 3689999999888888754
No 213
>COG4922 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.44 E-value=3.2e+02 Score=23.17 Aligned_cols=46 Identities=9% Similarity=0.080 Sum_probs=30.8
Q ss_pred HHHHHHHHHH-c-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC
Q 012554 17 AFVHQYYLIL-H-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL 68 (461)
Q Consensus 17 ~Fv~~YY~~l-~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l 68 (461)
..|-++|..| + -..+.-.++|. ++.+.++-. ...|.+.+..++..+
T Consensus 9 ~~v~~~y~~~~~~g~veka~a~~v-d~YiQHnp~-----vpdGk~~fv~fFt~f 56 (129)
T COG4922 9 QVVIQFYRTLFEAGEVEKADAYLV-DRYIQHNPM-----VPDGKDGFVRFFTEF 56 (129)
T ss_pred HHHHHHHHHHHHCCCHHHhhhhhh-hHHHhcCCC-----CCCchHHHHHHHHHH
Confidence 4455666554 4 46667777777 677777543 677888888888755
No 214
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=21.43 E-value=2.1e+02 Score=22.97 Aligned_cols=29 Identities=14% Similarity=0.131 Sum_probs=25.7
Q ss_pred ceeeccCCCCcccccccHHHHHHHHHhCC
Q 012554 41 SKLGRPEENGAMSITTTMQAINDKILALH 69 (461)
Q Consensus 41 s~l~~~~~~~~~~~~~g~~~I~~~~~~l~ 69 (461)
=+|.|.|.+|...+++..+++...+.+++
T Consensus 48 ftlky~DeeGDlvtIssdeEL~~A~~~~~ 76 (87)
T cd06402 48 FQLFWKDEEGDLVAFSSDEELVMALGSLN 76 (87)
T ss_pred EEEEEECCCCCEEeecCHHHHHHHHHcCC
Confidence 37899999999889999999999999886
No 215
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=21.28 E-value=2.6e+02 Score=22.25 Aligned_cols=59 Identities=10% Similarity=0.050 Sum_probs=37.3
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcC-CccEEEEEEccHHHHHHHHHhCC
Q 012554 293 IYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQK-GFCFGFVEFEEENAVQSAIEASP 351 (461)
Q Consensus 293 lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k-~~g~aFVeF~~~~~a~~Al~~~~ 351 (461)
-|+--+..+.+..++++.++.+-.|+-..|...+.+ ..--|||.+.....|......+|
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~kig 82 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRLG 82 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhhc
Confidence 344456788999999999987433443223322222 33358999998888777655443
No 216
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=20.98 E-value=4.9e+02 Score=28.25 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=18.5
Q ss_pred ccccccHHHHHHHHHhCC-CCcceEEEEEeeeeeeCCC
Q 012554 52 MSITTTMQAINDKILALH-YGEFSAEITTVDAQESYNG 88 (461)
Q Consensus 52 ~~~~~g~~~I~~~~~~l~-~~~~~~~I~~~d~q~s~~~ 88 (461)
.+.-.|+++...-|..|. +. .+.+.-+|-..+.++
T Consensus 107 ~ns~dgqed~e~sleNlqd~~--~md~svlDe~Eidn~ 142 (940)
T KOG4661|consen 107 ANSEDGQEDQEDSLENLQDYS--HMDDSVLDEHEIDNG 142 (940)
T ss_pred cccccchhhHHHhHhhhcccc--ccccccccccccccc
Confidence 334457777777776663 33 333444455544444
No 217
>PF13355 DUF4101: Protein of unknown function (DUF4101)
Probab=20.27 E-value=3.9e+02 Score=22.40 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=30.3
Q ss_pred ceEEEEEeeeeeeCCCcEEEEEE----EEEEcCC------CCcceeEEEEEEEEeCCeEEEE
Q 012554 73 FSAEITTVDAQESYNGGVIVLVT----GYLTGKD------SVRRKFSQSFFLAPQDKGYFVL 124 (461)
Q Consensus 73 ~~~~I~~~d~q~s~~~~ilv~V~----G~~~~~~------~~~~~F~q~F~L~~~~~~y~v~ 124 (461)
.+.+|.+|+......+.+.|.++ .++..++ .....+.=++.|..++++|-|.
T Consensus 55 ~~~~I~sv~~~~~~~~ra~v~a~v~E~~~l~~~g~~~~~~s~~~~~~vrY~L~r~~~~WkI~ 116 (117)
T PF13355_consen 55 HKLKIDSVEVFSDSPNRATVEATVTESAQLYDNGQPDNNPSYDSTLRVRYELVRQNGQWKIT 116 (117)
T ss_pred eeeEEEEEEEcCCCCCeEEEEEEEEEEEEEEeCCccccCCCCCCcEEEEEEEEEcCCEEEec
Confidence 46677777766543333333332 2222222 2335567788999999999885
No 218
>KOG2044 consensus 5'-3' exonuclease HKE1/RAT1 [Replication, recombination and repair; RNA processing and modification]
Probab=20.25 E-value=3.5e+02 Score=30.62 Aligned_cols=11 Identities=36% Similarity=0.504 Sum_probs=7.8
Q ss_pred eEEEEcceEEe
Q 012554 120 GYFVLNDVFRY 130 (461)
Q Consensus 120 ~y~v~nd~fr~ 130 (461)
.|||-||.+-.
T Consensus 336 CFFvGNDFLPH 346 (931)
T KOG2044|consen 336 CFFVGNDFLPH 346 (931)
T ss_pred EeeecCccCCC
Confidence 48888887733
Done!