Query 012554
Match_columns 461
No_of_seqs 453 out of 3110
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 11:42:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012554.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012554hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q90_A RAS GTPase-activating p 100.0 6.9E-39 2.4E-43 281.1 14.7 128 8-135 6-139 (140)
2 3ujm_A Rasputin; NTF2-like fol 100.0 1.8E-37 6E-42 265.1 12.8 118 10-131 2-120 (120)
3 1zo2_A NTF2, nuclear transport 100.0 1E-36 3.5E-41 263.6 15.3 123 5-132 5-128 (129)
4 1gy6_A Nuclear transport facto 100.0 1.2E-36 4.2E-41 262.5 15.0 123 8-135 4-126 (127)
5 1gy7_A Nuclear transport facto 100.0 2.7E-36 9.3E-41 259.6 15.5 119 10-133 4-124 (125)
6 2qiy_A UBP3-associated protein 100.0 3.2E-35 1.1E-39 262.2 14.7 129 8-136 8-152 (154)
7 3nv0_B NTF2-related export pro 100.0 2.1E-34 7.3E-39 255.2 15.6 117 9-132 31-154 (154)
8 1jkg_A P15; NTF2-like domain, 100.0 1.4E-32 4.8E-37 241.2 15.2 118 9-133 11-138 (140)
9 1jkg_B TAP; NTF2-like domain, 99.8 7.1E-21 2.4E-25 182.2 12.9 124 9-134 12-171 (250)
10 1of5_A MRNA export factor MEX6 99.8 4.4E-21 1.5E-25 178.8 11.0 124 9-134 8-204 (221)
11 1q40_B MEX67, mRNA export fact 99.8 7E-20 2.4E-24 170.6 11.3 124 9-134 11-210 (219)
12 1h2v_Z 20 kDa nuclear CAP bind 99.7 5E-18 1.7E-22 151.2 11.7 80 288-367 37-119 (156)
13 3q2s_C Cleavage and polyadenyl 99.7 3E-18 1E-22 162.4 8.6 79 289-367 67-150 (229)
14 1u6f_A Tcubp1, RNA-binding pro 99.7 1.1E-15 3.6E-20 133.2 17.3 80 288-367 40-122 (139)
15 4fxv_A ELAV-like protein 1; RN 99.7 1.2E-16 4.2E-21 131.3 10.4 79 288-366 17-98 (99)
16 3nv0_A Nuclear RNA export fact 99.7 7.3E-16 2.5E-20 142.5 13.2 122 10-133 11-185 (205)
17 4f25_A Polyadenylate-binding p 99.6 6.1E-16 2.1E-20 130.6 10.0 78 290-367 5-83 (115)
18 2cqi_A Nucleolysin TIAR; RNA r 99.6 2.8E-15 9.7E-20 123.6 12.6 80 288-367 13-93 (103)
19 1x4a_A Splicing factor, argini 99.6 2.8E-15 9.6E-20 125.0 12.3 79 288-367 20-99 (109)
20 2cq3_A RNA-binding protein 9; 99.6 4.9E-15 1.7E-19 122.2 13.2 80 288-367 13-93 (103)
21 2dnz_A Probable RNA-binding pr 99.6 3.3E-15 1.1E-19 121.2 11.7 79 289-367 4-85 (95)
22 2cqd_A RNA-binding region cont 99.6 6.1E-15 2.1E-19 124.3 13.6 81 287-367 14-96 (116)
23 1x4c_A Splicing factor, argini 99.6 5.3E-15 1.8E-19 123.2 13.1 75 288-367 13-93 (108)
24 2d9p_A Polyadenylate-binding p 99.6 3.7E-15 1.3E-19 122.8 12.0 80 288-367 13-93 (103)
25 1whw_A Hypothetical protein ri 99.6 3.9E-15 1.3E-19 121.7 11.8 80 288-367 6-88 (99)
26 2cpf_A RNA binding motif prote 99.6 3.8E-15 1.3E-19 121.6 11.5 80 288-367 3-88 (98)
27 2cpz_A CUG triplet repeat RNA- 99.6 4.4E-15 1.5E-19 125.0 12.0 80 288-367 23-105 (115)
28 3ex7_B RNA-binding protein 8A; 99.6 1.3E-15 4.3E-20 130.4 8.7 80 288-367 20-102 (126)
29 2dgv_A HnRNP M, heterogeneous 99.6 4.5E-15 1.5E-19 119.6 11.1 80 288-367 6-86 (92)
30 2dgo_A Cytotoxic granule-assoc 99.6 1.5E-14 5.3E-19 121.6 14.8 80 288-367 13-95 (115)
31 2fy1_A RNA-binding motif prote 99.6 6.7E-15 2.3E-19 124.4 12.5 80 288-367 5-86 (116)
32 3s8s_A Histone-lysine N-methyl 99.6 3.2E-15 1.1E-19 125.3 10.3 80 288-367 4-86 (110)
33 1x5u_A Splicing factor 3B subu 99.6 8.1E-15 2.8E-19 121.2 12.5 80 288-367 13-95 (105)
34 2dnh_A Bruno-like 5, RNA bindi 99.6 1E-14 3.4E-19 120.6 12.6 80 288-367 13-97 (105)
35 2dnq_A RNA-binding protein 4B; 99.6 8.2E-15 2.8E-19 117.8 11.6 74 288-367 6-80 (90)
36 2dgs_A DAZ-associated protein 99.6 1.1E-14 3.8E-19 119.1 12.7 80 288-367 8-89 (99)
37 2cph_A RNA binding motif prote 99.6 7.3E-15 2.5E-19 121.8 11.6 80 288-367 13-97 (107)
38 1x5t_A Splicing factor 3B subu 99.6 5.2E-15 1.8E-19 120.2 10.1 79 289-367 4-86 (96)
39 1x5s_A Cold-inducible RNA-bind 99.6 5.8E-15 2E-19 121.4 10.5 80 288-367 10-92 (102)
40 3pgw_S U1-70K; protein-RNA com 99.6 7.7E-15 2.6E-19 151.7 13.8 80 288-367 100-182 (437)
41 2lxi_A RNA-binding protein 10; 99.6 9.5E-16 3.2E-20 123.9 5.5 78 290-367 1-83 (91)
42 2dgu_A Heterogeneous nuclear r 99.6 1.3E-14 4.3E-19 119.8 12.4 74 288-367 9-83 (103)
43 2cq0_A Eukaryotic translation 99.6 9.2E-15 3.1E-19 120.5 11.4 80 288-367 13-95 (103)
44 2khc_A Testis-specific RNP-typ 99.6 1.7E-14 5.8E-19 121.9 13.0 78 288-365 38-118 (118)
45 1wi8_A EIF-4B, eukaryotic tran 99.6 1E-14 3.5E-19 120.5 10.9 78 288-367 13-94 (104)
46 2dhg_A TRNA selenocysteine ass 99.6 1.6E-14 5.4E-19 119.2 11.9 80 288-367 7-90 (104)
47 2err_A Ataxin-2-binding protei 99.6 4.8E-15 1.6E-19 123.8 8.8 80 288-367 27-107 (109)
48 1sjq_A Polypyrimidine tract-bi 99.6 3.6E-15 1.2E-19 123.4 7.9 76 288-367 14-92 (105)
49 3md1_A Nuclear and cytoplasmic 99.6 8.7E-15 3E-19 115.5 9.6 78 290-367 1-81 (83)
50 2do4_A Squamous cell carcinoma 99.6 2E-14 7E-19 117.7 12.1 80 288-367 15-96 (100)
51 3s7r_A Heterogeneous nuclear r 99.6 1.2E-14 4.3E-19 115.8 10.3 77 288-364 9-87 (87)
52 2dnm_A SRP46 splicing factor; 99.6 8.8E-15 3E-19 120.6 9.7 80 288-367 11-93 (103)
53 3bs9_A Nucleolysin TIA-1 isofo 99.6 8.3E-15 2.8E-19 116.7 9.3 79 289-367 5-86 (87)
54 2lkz_A RNA-binding protein 5; 99.6 3.8E-15 1.3E-19 121.4 7.4 79 288-366 7-94 (95)
55 2cqb_A Peptidyl-prolyl CIS-tra 99.6 7.2E-15 2.5E-19 120.8 9.0 80 288-367 10-92 (102)
56 2dgp_A Bruno-like 4, RNA bindi 99.6 1.2E-14 4E-19 120.4 10.3 80 288-367 11-96 (106)
57 2cpd_A Apobec-1 stimulating pr 99.6 3.4E-14 1.1E-18 116.3 12.7 74 288-367 13-89 (99)
58 2dng_A Eukaryotic translation 99.6 2.5E-14 8.7E-19 117.9 12.0 78 288-367 13-93 (103)
59 2cpe_A RNA-binding protein EWS 99.6 1.4E-14 4.8E-19 121.4 10.6 80 288-367 13-103 (113)
60 1x4d_A Matrin 3; structural ge 99.6 1.6E-14 5.5E-19 119.1 10.6 76 288-367 13-92 (102)
61 2dgx_A KIAA0430 protein; RRM d 99.6 1E-14 3.6E-19 118.8 9.4 79 288-367 7-90 (96)
62 1x4h_A RNA-binding protein 28; 99.6 2.2E-14 7.5E-19 119.7 11.6 80 288-367 13-101 (111)
63 2dgt_A RNA-binding protein 30; 99.6 2.2E-14 7.4E-19 115.8 11.2 74 288-367 8-82 (92)
64 2fc9_A NCL protein; structure 99.6 1.4E-14 4.9E-19 118.9 10.3 77 288-367 13-91 (101)
65 2dh8_A DAZ-associated protein 99.6 1.7E-14 5.7E-19 119.4 10.7 80 288-367 14-95 (105)
66 1x4b_A Heterogeneous nuclear r 99.6 1.3E-14 4.6E-19 122.2 10.2 80 288-367 25-106 (116)
67 3mdf_A Peptidyl-prolyl CIS-tra 99.6 1.2E-14 4E-19 115.2 9.3 78 288-365 5-85 (85)
68 2cqg_A TDP-43, TAR DNA-binding 99.6 4.3E-14 1.5E-18 116.4 12.9 79 288-367 13-93 (103)
69 2cqc_A Arginine/serine-rich sp 99.6 1.6E-14 5.5E-19 117.0 10.0 79 288-366 13-94 (95)
70 3r27_A HnRNP L, heterogeneous 99.6 1.6E-14 5.6E-19 118.3 10.1 76 288-367 19-97 (100)
71 2do0_A HnRNP M, heterogeneous 99.6 5.9E-14 2E-18 117.7 13.8 80 288-367 13-94 (114)
72 2cq1_A PTB-like protein L; RRM 99.5 4.3E-14 1.5E-18 116.5 12.3 76 288-367 13-91 (101)
73 2kvi_A Nuclear polyadenylated 99.5 8.4E-15 2.9E-19 119.3 8.0 74 288-367 8-83 (96)
74 1wez_A HnRNP H', FTP-3, hetero 99.5 1.9E-14 6.6E-19 118.8 10.1 79 288-367 13-92 (102)
75 3n9u_C Cleavage and polyadenyl 99.5 1.5E-14 5E-19 128.9 10.0 80 288-367 53-137 (156)
76 2e5h_A Zinc finger CCHC-type a 99.5 2.2E-14 7.7E-19 115.9 10.2 78 288-365 14-94 (94)
77 2cpi_A CCR4-NOT transcription 99.5 1.3E-14 4.5E-19 121.5 9.1 80 288-367 13-101 (111)
78 3p5t_L Cleavage and polyadenyl 99.5 5.4E-15 1.8E-19 119.0 6.4 77 291-367 2-83 (90)
79 2x1f_A MRNA 3'-END-processing 99.5 1.7E-14 5.7E-19 117.4 9.2 79 289-367 1-82 (96)
80 2la4_A Nuclear and cytoplasmic 99.5 6.6E-15 2.3E-19 120.9 6.8 76 288-367 25-101 (101)
81 2cpj_A Non-POU domain-containi 99.5 4.4E-14 1.5E-18 115.5 11.6 76 288-367 13-89 (99)
82 2jrs_A RNA-binding protein 39; 99.5 3.6E-14 1.2E-18 118.3 11.2 80 288-367 24-106 (108)
83 2cqh_A IGF-II mRNA-binding pro 99.5 1.5E-14 5.3E-19 116.8 8.6 75 288-367 6-83 (93)
84 2jvr_A Nucleolar protein 3; RN 99.5 1.3E-14 4.6E-19 121.6 8.5 78 288-367 26-105 (111)
85 1wex_A Hypothetical protein (r 99.5 1E-13 3.5E-18 114.8 13.7 76 288-367 13-91 (104)
86 2rs2_A Musashi-1, RNA-binding 99.5 1.9E-14 6.4E-19 120.2 9.4 80 288-367 23-104 (109)
87 2ad9_A Polypyrimidine tract-bi 99.5 3.1E-14 1E-18 120.6 10.5 76 288-367 29-107 (119)
88 2wbr_A GW182, gawky, LD47780P; 99.5 1.4E-14 4.7E-19 115.1 7.7 73 289-365 6-79 (89)
89 2ywk_A Putative RNA-binding pr 99.5 2.1E-14 7.3E-19 116.3 9.2 79 288-366 14-94 (95)
90 2div_A TRNA selenocysteine ass 99.5 4E-14 1.4E-18 115.7 10.8 80 288-367 7-94 (99)
91 2dnp_A RNA-binding protein 14; 99.5 3.6E-14 1.2E-18 114.0 10.3 74 288-367 7-81 (90)
92 1s79_A Lupus LA protein; RRM, 99.5 1.6E-14 5.3E-19 119.6 8.3 79 288-366 9-88 (103)
93 1p27_B RNA-binding protein 8A; 99.5 2.4E-14 8.1E-19 118.5 9.4 80 288-367 21-103 (106)
94 4a8x_A RNA-binding protein wit 99.5 2.6E-14 8.8E-19 114.0 9.3 79 289-367 3-85 (88)
95 2cpy_A RNA-binding protein 12; 99.5 2.2E-14 7.6E-19 120.7 9.2 80 288-367 13-94 (114)
96 3beg_B Splicing factor, argini 99.5 1.1E-14 3.7E-19 122.9 7.3 74 289-367 15-94 (115)
97 2hvz_A Splicing factor, argini 99.5 2.4E-14 8.1E-19 117.6 9.1 74 291-367 1-75 (101)
98 3ucg_A Polyadenylate-binding p 99.5 3.5E-14 1.2E-18 113.5 9.8 78 289-367 5-85 (89)
99 2cqp_A RNA-binding protein 12; 99.5 2.8E-14 9.6E-19 116.4 9.3 80 288-367 13-95 (98)
100 2jwn_A Embryonic polyadenylate 99.5 4.7E-14 1.6E-18 120.2 11.0 79 288-367 34-115 (124)
101 2la6_A RNA-binding protein FUS 99.5 5.6E-14 1.9E-18 114.9 10.9 78 288-365 11-99 (99)
102 2fc8_A NCL protein; structure 99.5 3.6E-14 1.2E-18 116.6 9.8 77 288-367 13-92 (102)
103 1wf1_A RNA-binding protein RAL 99.5 5E-14 1.7E-18 117.6 10.7 74 288-367 25-100 (110)
104 2cpx_A Hypothetical protein FL 99.5 4.2E-14 1.4E-18 118.8 9.9 80 288-367 23-105 (115)
105 1x4g_A Nucleolysin TIAR; struc 99.5 5E-14 1.7E-18 117.4 10.0 76 288-367 23-99 (109)
106 1why_A Hypothetical protein ri 99.5 1.2E-13 4E-18 112.6 11.7 76 288-367 15-93 (97)
107 3ns6_A Eukaryotic translation 99.5 1.2E-14 4.1E-19 119.4 5.8 79 289-367 5-93 (100)
108 2e5j_A Methenyltetrahydrofolat 99.5 6.1E-14 2.1E-18 114.3 10.0 77 288-367 17-94 (97)
109 3ulh_A THO complex subunit 4; 99.5 5.9E-14 2E-18 116.3 9.7 78 288-365 27-106 (107)
110 2xnq_A Nuclear polyadenylated 99.5 7.3E-14 2.5E-18 114.1 10.1 74 288-367 20-95 (97)
111 1x4f_A Matrin 3; structural ge 99.5 2.5E-14 8.5E-19 119.8 7.3 76 288-367 23-102 (112)
112 2kxn_B Transformer-2 protein h 99.5 4.8E-14 1.6E-18 121.5 9.3 80 288-367 44-126 (129)
113 2dgw_A Probable RNA-binding pr 99.5 1.3E-13 4.5E-18 110.8 11.3 78 288-367 8-87 (91)
114 1p1t_A Cleavage stimulation fa 99.5 5.9E-14 2E-18 115.6 9.3 79 289-367 7-88 (104)
115 1oo0_B CG8781-PA, drosophila Y 99.5 3.8E-14 1.3E-18 118.2 8.1 80 288-367 24-106 (110)
116 1wg5_A Heterogeneous nuclear r 99.5 1.2E-13 4.2E-18 114.1 11.1 80 288-367 13-94 (104)
117 2e5g_A U6 snRNA-specific termi 99.5 1.8E-13 6.2E-18 110.8 11.8 76 288-367 6-82 (94)
118 2krb_A Eukaryotic translation 99.5 3.4E-14 1.2E-18 111.9 7.1 73 290-362 1-81 (81)
119 1x5p_A Negative elongation fac 99.5 3.2E-13 1.1E-17 110.0 13.1 74 288-367 13-87 (97)
120 1q42_A MTR2, mRNA transport re 99.5 2.4E-14 8.2E-19 126.8 6.6 101 10-117 24-146 (201)
121 2m2b_A RNA-binding protein 10; 99.5 4.6E-14 1.6E-18 121.8 8.1 79 288-367 21-108 (131)
122 2jvo_A Nucleolar protein 3; nu 99.5 8.5E-14 2.9E-18 116.0 9.4 74 288-367 29-103 (108)
123 2nlw_A Eukaryotic translation 99.5 8.1E-14 2.8E-18 115.5 9.2 79 289-367 14-100 (105)
124 2cq4_A RNA binding motif prote 99.5 2.9E-14 1E-18 119.7 6.6 79 288-367 23-104 (114)
125 2ek1_A RNA-binding protein 12; 99.5 3.6E-14 1.2E-18 115.0 6.8 79 288-366 13-94 (95)
126 2hgn_A Heterogeneous nuclear r 99.5 1.3E-14 4.5E-19 126.5 4.4 79 288-367 44-123 (139)
127 1x4e_A RNA binding motif, sing 99.5 2.5E-14 8.6E-19 113.5 5.4 77 289-365 4-83 (85)
128 1fjc_A Nucleolin RBD2, protein 99.5 6.3E-14 2.1E-18 113.8 7.9 77 288-367 14-91 (96)
129 2j76_E EIF-4B, EIF4B, eukaryot 99.5 2.8E-14 9.6E-19 117.1 5.8 78 288-367 17-98 (100)
130 2a3j_A U1 small nuclear ribonu 99.5 1.6E-13 5.3E-18 117.9 10.6 79 288-367 27-110 (127)
131 2mss_A Protein (musashi1); RNA 99.5 4E-14 1.4E-18 109.5 6.2 73 292-364 1-75 (75)
132 1uaw_A Mouse-musashi-1; RNP-ty 99.5 3.8E-14 1.3E-18 110.1 6.0 74 291-364 1-76 (77)
133 2ytc_A PRE-mRNA-splicing facto 99.5 2E-13 6.7E-18 108.2 10.3 74 288-365 10-85 (85)
134 2db1_A Heterogeneous nuclear r 99.5 1.5E-13 5.1E-18 116.4 10.1 80 288-367 15-98 (118)
135 2lcw_A RNA-binding protein FUS 99.2 3.7E-15 1.3E-19 125.7 0.0 80 288-367 5-95 (116)
136 1rk8_A CG8781-PA, CG8781-PA pr 99.5 1.2E-13 4.3E-18 123.8 9.4 79 289-367 71-152 (165)
137 2kt5_A RNA and export factor-b 99.5 1.4E-13 5E-18 117.3 9.3 80 288-367 33-114 (124)
138 1nu4_A U1A RNA binding domain; 99.5 7.3E-14 2.5E-18 113.6 6.9 79 288-367 6-89 (97)
139 1wel_A RNA-binding protein 12; 99.5 1.3E-13 4.3E-18 117.8 8.5 79 288-367 23-104 (124)
140 2dis_A Unnamed protein product 99.5 1.1E-13 3.9E-18 115.0 8.0 80 288-367 6-92 (109)
141 3lqv_A PRE-mRNA branch site pr 99.5 2.1E-13 7.3E-18 114.5 9.6 79 288-367 6-85 (115)
142 3d2w_A TAR DNA-binding protein 99.5 1.2E-13 4.1E-18 111.0 7.5 76 288-367 9-84 (89)
143 1iqt_A AUF1, heterogeneous nuc 99.4 3.9E-14 1.3E-18 109.5 4.5 73 292-364 1-75 (75)
144 1wf0_A TDP-43, TAR DNA-binding 99.4 9.1E-14 3.1E-18 111.1 6.8 75 289-367 4-78 (88)
145 2kn4_A Immunoglobulin G-bindin 99.4 2.4E-13 8.4E-18 120.7 10.2 80 288-367 68-150 (158)
146 1whx_A Hypothetical protein ri 99.4 1.5E-13 5.1E-18 115.1 8.2 75 289-367 9-84 (111)
147 2hgl_A HNRPF protein, heteroge 99.4 8.6E-14 2.9E-18 120.9 6.9 80 288-367 42-125 (136)
148 1x5o_A RNA binding motif, sing 99.4 4.7E-13 1.6E-17 112.2 11.3 80 288-367 23-112 (114)
149 1sjr_A Polypyrimidine tract-bi 99.4 2.8E-13 9.6E-18 120.6 10.0 76 290-367 46-124 (164)
150 2ki2_A SS-DNA binding protein 99.4 4.6E-14 1.6E-18 113.2 4.2 76 291-367 2-80 (90)
151 2e44_A Insulin-like growth fac 99.4 3.7E-13 1.3E-17 109.2 9.7 79 288-367 13-92 (96)
152 2lmi_A GRSF-1, G-rich sequence 99.4 7.8E-14 2.7E-18 115.9 5.6 80 288-367 9-92 (107)
153 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 4E-13 1.4E-17 116.6 10.4 77 288-364 61-140 (140)
154 2lea_A Serine/arginine-rich sp 99.4 1.2E-13 4.2E-18 119.9 6.8 80 288-367 45-127 (135)
155 2dha_A FLJ20171 protein; RRM d 99.4 1.1E-13 3.8E-18 118.1 6.4 80 288-367 21-105 (123)
156 2dnn_A RNA-binding protein 12; 99.4 2E-13 7E-18 114.0 7.8 78 289-367 15-93 (109)
157 1fj7_A Nucleolin RBD1, protein 99.4 6.8E-14 2.3E-18 114.8 4.8 77 289-367 16-95 (101)
158 2hgm_A HNRPF protein, heteroge 99.4 1.5E-13 5.1E-18 117.7 6.4 79 288-367 40-121 (126)
159 1wg1_A KIAA1579 protein, homol 99.4 2E-13 7E-18 109.2 6.8 74 289-367 4-78 (88)
160 2i2y_A Fusion protein consists 99.4 2.4E-13 8.3E-18 119.8 7.8 77 288-367 71-148 (150)
161 4f02_A Polyadenylate-binding p 99.4 4.1E-13 1.4E-17 125.4 9.8 78 290-367 103-181 (213)
162 3egn_A RNA-binding protein 40; 99.4 2.7E-13 9.1E-18 118.6 7.3 79 289-367 44-130 (143)
163 1l3k_A Heterogeneous nuclear r 99.4 7.9E-13 2.7E-17 120.8 10.4 78 290-367 104-183 (196)
164 2xs2_A Deleted in azoospermia- 99.4 3.1E-13 1E-17 111.0 6.6 78 289-367 8-86 (102)
165 3zzy_A Polypyrimidine tract-bi 99.4 1.3E-12 4.5E-17 112.0 10.3 75 290-367 28-106 (130)
166 2f3j_A RNA and export factor b 99.4 8.6E-13 2.9E-17 119.9 9.0 80 288-367 86-167 (177)
167 2e5i_A Heterogeneous nuclear r 99.4 2.2E-12 7.4E-17 110.1 10.2 74 290-367 25-102 (124)
168 2hzc_A Splicing factor U2AF 65 99.3 1.7E-12 5.9E-17 103.1 7.9 70 289-363 5-86 (87)
169 2diu_A KIAA0430 protein; struc 99.3 2.8E-12 9.5E-17 102.8 9.0 71 289-367 7-84 (96)
170 2voo_A Lupus LA protein; RNA-b 99.3 2.9E-12 1E-16 118.0 10.3 78 289-366 108-186 (193)
171 4f02_A Polyadenylate-binding p 99.3 2.9E-12 9.8E-17 119.6 10.1 79 289-367 14-95 (213)
172 2cq2_A Hypothetical protein LO 99.3 2.4E-12 8.1E-17 108.0 8.4 76 288-367 23-106 (114)
173 2bz2_A Negative elongation fac 99.3 2.6E-12 8.7E-17 109.3 8.8 74 288-367 37-111 (121)
174 2dnl_A Cytoplasmic polyadenyla 99.3 1.5E-12 5.3E-17 109.3 6.9 76 288-365 6-86 (114)
175 1l3k_A Heterogeneous nuclear r 99.3 3.6E-12 1.2E-16 116.4 9.9 80 288-367 11-92 (196)
176 3tyt_A Heterogeneous nuclear r 99.3 4.2E-12 1.5E-16 118.0 9.9 76 289-367 3-80 (205)
177 1b7f_A Protein (SXL-lethal pro 99.3 4.5E-12 1.5E-16 112.7 9.5 79 289-367 2-83 (168)
178 1fxl_A Paraneoplastic encephal 99.3 6.3E-12 2.2E-16 111.4 10.3 78 290-367 2-82 (167)
179 3md3_A Nuclear and cytoplasmic 99.3 7.9E-12 2.7E-16 110.6 10.8 77 289-365 86-165 (166)
180 3pgw_A U1-A; protein-RNA compl 99.3 3.3E-11 1.1E-15 116.9 15.7 75 288-365 205-281 (282)
181 2qfj_A FBP-interacting repress 99.3 7.7E-12 2.6E-16 116.0 10.5 79 289-367 124-205 (216)
182 2yh0_A Splicing factor U2AF 65 99.3 7E-12 2.4E-16 114.7 9.3 80 288-367 112-194 (198)
183 3md3_A Nuclear and cytoplasmic 99.3 6.3E-12 2.1E-16 111.3 8.3 77 291-367 1-79 (166)
184 2cjk_A Nuclear polyadenylated 99.3 3.7E-12 1.3E-16 113.3 6.7 78 290-367 87-166 (167)
185 2g4b_A Splicing factor U2AF 65 99.3 7.3E-12 2.5E-16 111.9 8.5 75 290-364 94-171 (172)
186 2j8a_A Histone-lysine N-methyl 99.3 8.6E-12 2.9E-16 105.7 7.2 76 291-366 3-95 (136)
187 3pgw_A U1-A; protein-RNA compl 99.2 2.3E-11 7.9E-16 117.9 10.8 79 288-367 7-90 (282)
188 1fje_B Nucleolin RBD12, protei 99.2 7.7E-12 2.6E-16 112.3 6.7 76 289-367 98-174 (175)
189 2qfj_A FBP-interacting repress 99.2 1.7E-11 5.8E-16 113.6 9.0 80 288-367 26-108 (216)
190 3u1l_A PRE-mRNA-splicing facto 99.2 1.6E-11 5.6E-16 116.2 8.6 76 288-367 132-229 (240)
191 2cjk_A Nuclear polyadenylated 99.2 1.1E-11 3.6E-16 110.3 6.6 78 289-367 2-81 (167)
192 2pe8_A Splicing factor 45; RRM 99.2 4.8E-11 1.6E-15 98.8 9.7 80 288-367 6-94 (105)
193 2adc_A Polypyrimidine tract-bi 99.2 2.7E-11 9.2E-16 114.2 9.2 77 288-367 32-110 (229)
194 2dit_A HIV TAT specific factor 99.2 1.4E-10 4.9E-15 96.9 12.7 78 288-367 13-102 (112)
195 3nmr_A Cugbp ELAV-like family 99.2 3.5E-11 1.2E-15 107.5 9.2 75 290-364 95-174 (175)
196 1b7f_A Protein (SXL-lethal pro 99.2 5.4E-11 1.9E-15 105.6 10.0 75 290-364 89-168 (168)
197 3nmr_A Cugbp ELAV-like family 99.2 6.7E-11 2.3E-15 105.6 10.0 79 289-367 2-88 (175)
198 1fxl_A Paraneoplastic encephal 99.2 7.5E-11 2.6E-15 104.3 9.8 75 290-364 88-167 (167)
199 1qm9_A Polypyrimidine tract-bi 99.2 3.6E-11 1.2E-15 110.2 7.5 76 289-367 2-79 (198)
200 2yh0_A Splicing factor U2AF 65 99.1 2.3E-11 8E-16 111.1 5.4 74 289-367 3-88 (198)
201 2d9o_A DNAJ (HSP40) homolog, s 99.1 7.8E-10 2.7E-14 90.6 13.1 74 290-367 10-90 (100)
202 2adc_A Polypyrimidine tract-bi 99.1 1.6E-10 5.5E-15 108.8 10.2 77 288-367 149-228 (229)
203 1fje_B Nucleolin RBD12, protei 99.1 3.6E-11 1.2E-15 107.8 5.0 80 288-367 11-91 (175)
204 1of5_B MTR2, YKL186C, mRNA tra 99.1 3.8E-10 1.3E-14 98.9 11.2 101 10-117 14-121 (184)
205 3sde_A Paraspeckle component 1 99.1 1.4E-10 4.8E-15 111.5 9.3 76 288-367 20-96 (261)
206 2ghp_A U4/U6 snRNA-associated 99.1 8.2E-11 2.8E-15 114.6 7.7 79 288-367 208-291 (292)
207 2ghp_A U4/U6 snRNA-associated 99.1 1.5E-10 5.2E-15 112.7 9.5 80 288-367 39-118 (292)
208 1qm9_A Polypyrimidine tract-bi 99.1 1.3E-10 4.5E-15 106.5 8.5 77 288-367 118-197 (198)
209 3smz_A Protein raver-1, ribonu 99.1 1.4E-10 4.9E-15 112.4 9.0 79 289-367 183-264 (284)
210 2g4b_A Splicing factor U2AF 65 99.1 1.5E-10 5.1E-15 103.3 8.3 74 289-367 3-88 (172)
211 3tyt_A Heterogeneous nuclear r 99.1 8.9E-11 3E-15 109.0 6.6 70 288-357 121-193 (205)
212 3smz_A Protein raver-1, ribonu 99.1 3.8E-10 1.3E-14 109.4 10.2 78 290-367 95-175 (284)
213 3sde_A Paraspeckle component 1 99.0 9.3E-10 3.2E-14 105.7 10.2 78 290-367 96-179 (261)
214 3v4m_A Splicing factor U2AF 65 99.0 8.3E-10 2.8E-14 91.3 7.1 79 289-367 4-97 (105)
215 3ue2_A Poly(U)-binding-splicin 98.9 2.1E-09 7.3E-14 90.7 8.9 79 289-367 19-109 (118)
216 1jmt_A Splicing factor U2AF 35 98.9 2.4E-10 8.4E-15 94.3 2.8 70 295-364 20-103 (104)
217 3tht_A Alkylated DNA repair pr 98.9 4.5E-09 1.5E-13 104.6 9.9 74 287-364 15-96 (345)
218 3s6e_A RNA-binding protein 39; 98.8 1.3E-08 4.5E-13 85.2 8.6 77 289-367 6-93 (114)
219 1owx_A Lupus LA protein, SS-B, 98.8 2.7E-08 9.2E-13 83.9 9.2 75 287-365 15-94 (121)
220 2dnr_A Synaptojanin-1; RRM dom 98.6 8.8E-08 3E-12 76.0 7.6 74 288-367 5-86 (91)
221 1ufw_A Synaptojanin 2; RNP dom 98.4 4.1E-07 1.4E-11 72.5 5.2 73 288-366 13-94 (95)
222 3dxb_A Thioredoxin N-terminall 98.1 6.8E-06 2.3E-10 76.5 7.7 65 303-367 142-213 (222)
223 4i4k_A Uncharacterized protein 97.8 0.00033 1.1E-08 60.4 12.6 106 15-125 21-134 (143)
224 2l9w_A U4/U6 snRNA-associated- 97.7 0.00011 3.9E-09 59.7 8.1 72 288-363 19-96 (117)
225 3gzr_A Uncharacterized protein 97.3 0.0045 1.5E-07 53.5 14.1 114 16-134 9-133 (146)
226 3cu3_A Domain of unknown funct 97.3 0.0026 8.8E-08 56.3 12.0 113 14-131 17-138 (172)
227 2dhx_A Poly (ADP-ribose) polym 97.2 0.0031 1.1E-07 50.8 10.0 73 289-367 7-84 (104)
228 3hx8_A MLR2180 protein, putati 97.0 0.012 3.9E-07 48.6 12.6 113 12-129 5-124 (129)
229 3d9r_A Ketosteroid isomerase-l 96.8 0.017 5.9E-07 48.0 12.6 113 13-131 11-133 (135)
230 3b7c_A Uncharacterized protein 96.4 0.093 3.2E-06 43.2 14.0 103 17-126 9-118 (122)
231 3gwr_A Putative calcium/calmod 96.3 0.04 1.4E-06 47.3 11.5 107 18-129 13-126 (144)
232 3h51_A Putative calcium/calmod 96.3 0.15 5E-06 43.9 15.2 116 10-133 18-142 (156)
233 2gxf_A Hypothetical protein YY 95.8 0.068 2.3E-06 45.2 10.6 107 16-127 6-120 (142)
234 3f7s_A Uncharacterized NTF2-li 95.6 0.23 8E-06 41.6 13.3 112 14-129 9-126 (142)
235 1whv_A Poly(A)-specific ribonu 95.6 0.041 1.4E-06 43.8 7.3 55 289-350 15-69 (100)
236 2ux0_A Calcium-calmodulin depe 95.4 0.32 1.1E-05 40.8 13.4 111 16-129 16-135 (143)
237 3jum_A Phenazine biosynthesis 95.3 0.087 3E-06 47.3 9.8 96 16-113 44-145 (185)
238 3rob_A Uncharacterized conserv 95.3 0.099 3.4E-06 44.5 9.7 111 12-129 16-135 (139)
239 2rcd_A Uncharacterized protein 95.2 0.32 1.1E-05 40.3 12.4 110 12-127 14-123 (129)
240 3duk_A NTF2-like protein of un 94.9 0.48 1.6E-05 39.3 12.6 107 16-130 15-123 (125)
241 2owp_A Hypothetical protein BX 94.9 0.51 1.8E-05 39.4 12.8 111 12-128 11-123 (129)
242 1wey_A Calcipressin 1; structu 94.8 0.054 1.9E-06 43.7 6.0 74 290-367 5-84 (104)
243 1tp6_A Hypothetical protein PA 94.7 0.29 9.9E-06 40.9 11.0 106 16-127 13-125 (128)
244 3ctr_A Poly(A)-specific ribonu 94.7 0.027 9.3E-07 44.9 4.0 52 292-350 8-59 (101)
245 3soy_A NTF2-like superfamily p 94.4 0.31 1.1E-05 41.6 10.4 114 12-128 10-133 (145)
246 1wwh_A Nucleoporin 35, nucleop 94.3 0.13 4.6E-06 42.5 7.6 72 288-364 22-94 (119)
247 3bb9_A Putative orphan protein 94.3 0.19 6.6E-06 42.7 9.1 107 14-126 31-145 (148)
248 3dm8_A Uncharacterized protein 94.2 0.42 1.5E-05 40.3 11.0 96 16-114 7-111 (143)
249 2rfr_A Uncharacterized protein 94.1 0.34 1.2E-05 41.2 10.2 112 15-133 21-144 (155)
250 3mg1_A OCP, orange carotenoid 94.1 0.33 1.1E-05 46.4 10.6 110 14-128 193-306 (323)
251 3fka_A Uncharacterized NTF-2 l 94.1 0.54 1.9E-05 38.7 11.1 103 17-130 13-119 (120)
252 3er7_A Uncharacterized NTF2-li 94.1 0.048 1.7E-06 46.1 4.6 59 17-80 6-72 (131)
253 3b8l_A Uncharacterized protein 94.1 0.47 1.6E-05 40.8 11.2 119 13-133 28-154 (163)
254 3cnx_A Uncharacterized protein 93.7 1.1 3.7E-05 39.5 12.8 111 17-132 16-157 (170)
255 3pq1_A Poly(A) RNA polymerase; 93.7 0.035 1.2E-06 57.0 3.4 58 290-351 53-110 (464)
256 1uw4_A UPF3X; nonsense mediate 93.6 0.19 6.4E-06 39.6 6.8 63 291-355 2-71 (91)
257 2r4i_A Uncharacterized protein 93.4 0.96 3.3E-05 36.3 11.4 104 17-126 10-117 (123)
258 2chc_A Protein RV3472; hypothe 93.4 0.99 3.4E-05 39.0 12.1 112 14-131 15-132 (170)
259 3p3d_A Nucleoporin 53; structu 93.2 0.11 3.6E-06 43.8 5.1 77 290-367 7-99 (132)
260 3blz_A NTF2-like protein of un 93.2 1.3 4.3E-05 36.6 11.9 109 16-132 15-126 (128)
261 3dxo_A Uncharacterized snoal-l 92.8 0.65 2.2E-05 38.1 9.5 64 16-84 6-77 (121)
262 3h3h_A Uncharacterized snoal-l 92.8 0.17 5.8E-06 41.5 5.8 68 13-80 8-82 (122)
263 3ff2_A Uncharacterized cystati 92.8 0.85 2.9E-05 36.7 10.1 62 16-80 5-69 (117)
264 3a76_A Gamma-hexachlorocyclohe 92.7 1 3.4E-05 39.5 11.2 115 14-132 32-155 (176)
265 3f14_A Uncharacterized NTF2-li 92.7 0.77 2.6E-05 36.9 9.6 90 17-115 4-100 (112)
266 1nww_A Limonene-1,2-epoxide hy 92.6 1.6 5.6E-05 36.5 12.1 50 15-68 24-74 (149)
267 3fsd_A NTF2-like protein of un 92.5 1 3.5E-05 37.4 10.5 105 16-125 17-127 (134)
268 4h3u_A Hypothetical protein; s 92.1 1.6 5.5E-05 37.2 11.5 104 17-128 29-138 (158)
269 3en8_A Uncharacterized NTF-2 l 91.4 3.9 0.00013 33.6 12.8 64 14-80 6-70 (128)
270 3ff0_A Phenazine biosynthesis 91.3 1.9 6.5E-05 37.7 11.0 96 14-113 20-123 (163)
271 1oh0_A Steroid delta-isomerase 91.0 0.98 3.4E-05 36.7 8.6 63 14-79 8-73 (131)
272 3hk4_A MLR7391 protein; NTF2-l 90.9 2.8 9.5E-05 35.2 11.5 99 16-118 23-126 (136)
273 3i0y_A Putative polyketide cyc 90.5 3.4 0.00012 33.9 11.7 51 15-69 10-61 (140)
274 3ebt_A Uncharacterized NTF2-li 90.4 3.3 0.00011 33.6 11.4 65 16-80 6-76 (132)
275 3dmc_A NTF2-like protein; stru 90.3 5.6 0.00019 32.9 12.8 62 6-68 5-67 (134)
276 1ohp_A Steroid delta-isomerase 90.2 1.5 5E-05 34.9 8.9 51 15-68 7-58 (125)
277 3gzb_A Putative snoal-like pol 90.2 0.78 2.7E-05 38.2 6.8 78 16-101 23-103 (154)
278 2rgq_A Domain of unknown funct 90.1 7.3 0.00025 32.4 13.7 111 14-130 11-127 (144)
279 2kn4_A Immunoglobulin G-bindin 89.8 0.29 1E-05 42.0 4.4 30 321-350 4-33 (158)
280 1sjw_A Nogalonic acid methyl e 89.6 3.6 0.00012 34.0 11.1 63 16-81 5-71 (144)
281 2gex_A SNOL; alpha+beta barrel 89.3 6 0.0002 33.1 12.5 63 14-81 5-70 (152)
282 3fh1_A Uncharacterized NTF2-li 89.3 3.3 0.00011 33.8 10.5 69 12-80 16-86 (129)
283 3f7x_A Putative polyketide cyc 89.2 4.6 0.00016 34.2 11.7 50 15-68 22-72 (151)
284 3k0z_A Putative polyketide cyc 89.0 7.1 0.00024 33.2 12.9 63 15-81 36-101 (159)
285 3ec9_A Uncharacterized NTF2-li 88.9 5.1 0.00017 32.9 11.6 65 16-80 15-83 (140)
286 3g8z_A Protein of unknown func 88.9 2 6.7E-05 36.3 9.0 55 14-68 21-76 (148)
287 2a15_A Hypothetical protein RV 88.8 6.1 0.00021 32.3 12.0 63 15-78 9-78 (139)
288 3ehc_A Snoal-like polyketide c 88.2 4.9 0.00017 32.5 10.9 58 16-81 6-66 (128)
289 2bng_A MB2760; epoxide hydrola 88.1 6.6 0.00023 32.7 11.9 63 14-80 16-80 (149)
290 2gey_A ACLR protein; alpha+bet 88.1 7.4 0.00025 32.9 12.4 61 15-81 6-69 (158)
291 3ef8_A Putative scyalone dehyd 88.0 5.5 0.00019 33.5 11.3 111 16-130 14-132 (150)
292 3f9s_A Putative polyketide cyc 87.3 11 0.00036 31.2 12.6 66 15-81 8-78 (146)
293 2f99_A Aklanonic acid methyl e 86.8 7.2 0.00025 32.8 11.4 64 15-81 13-80 (153)
294 1z1s_A Hypothetical protein PA 86.0 7 0.00024 33.3 11.0 53 16-68 26-80 (163)
295 1s5a_A Hypothetical protein YE 85.8 7.1 0.00024 32.2 10.8 55 14-68 11-67 (150)
296 3kkg_A Putative snoal-like pol 84.9 7 0.00024 32.4 10.3 74 15-95 11-90 (146)
297 1tuh_A BAL32A, hypothetical pr 84.9 15 0.00052 30.7 12.6 68 13-80 29-100 (156)
298 2l08_A Regulator of nonsense t 84.2 0.78 2.7E-05 36.4 3.5 64 290-355 9-79 (97)
299 3fgy_A Uncharacterized NTF2-li 83.5 4.6 0.00016 32.8 8.4 54 15-68 7-61 (135)
300 2f86_B Hypothetical protein K1 82.7 10 0.00034 32.0 10.3 112 16-129 15-131 (143)
301 2i2y_A Fusion protein consists 82.2 0.7 2.4E-05 39.2 2.7 45 322-367 5-51 (150)
302 3g0k_A Putative membrane prote 82.2 21 0.00073 29.9 12.6 65 10-80 24-92 (148)
303 3rga_A Epoxide hydrolase; NTF2 75.8 7.8 0.00027 36.7 8.2 51 15-68 8-59 (283)
304 3ejv_A Uncharacterized protein 75.2 40 0.0014 29.2 12.6 72 14-85 27-108 (179)
305 3f8h_A Putative polyketide cyc 74.3 32 0.0011 28.7 11.0 48 17-68 22-70 (150)
306 3mso_A Steroid delta-isomerase 74.2 9.7 0.00033 31.9 7.5 52 14-68 10-62 (143)
307 3f40_A Uncharacterized NTF2-li 73.0 11 0.00038 30.2 7.3 49 16-69 9-58 (114)
308 3grd_A Uncharacterized NTF2-su 71.8 8.1 0.00028 31.3 6.4 65 16-80 7-75 (134)
309 3rga_A Epoxide hydrolase; NTF2 71.4 37 0.0013 31.9 11.8 56 11-69 136-192 (283)
310 2k54_A Protein ATU0742; protei 69.3 40 0.0014 26.6 12.0 90 16-114 6-101 (123)
311 3g16_A Uncharacterized protein 65.3 64 0.0022 27.5 10.9 67 12-80 9-78 (156)
312 3ke7_A Putative ketosteroid is 59.3 74 0.0025 26.2 13.0 113 14-131 15-130 (134)
313 3eby_A Beta subunit of A putat 58.4 71 0.0024 27.0 10.1 130 1-130 2-150 (163)
314 3d45_A Poly(A)-specific ribonu 57.5 18 0.0006 37.4 6.9 54 290-350 440-493 (507)
315 2imj_A Hypothetical protein DU 54.3 16 0.00055 31.0 4.8 89 1-100 1-99 (166)
316 3lyg_A NTF2-like protein of un 51.7 18 0.0006 29.3 4.4 49 18-69 7-60 (120)
317 3f8x_A Putative delta-5-3-keto 48.8 20 0.00069 30.3 4.8 53 13-68 20-73 (148)
318 3ub1_A ORF13-like protein; NTF 47.9 1.5E+02 0.0051 27.5 11.0 86 14-125 156-245 (261)
319 3cwz_B RAB6IP1, RAB6-interacti 46.0 28 0.00097 34.5 6.0 78 12-98 175-277 (384)
320 2pk2_A Cyclin-T1, protein TAT; 43.4 5 0.00017 39.6 0.0 13 301-313 228-240 (358)
321 4gb5_A Uncharacterized protein 43.0 1E+02 0.0034 25.5 8.5 69 16-84 14-86 (159)
322 2g0c_A ATP-dependent RNA helic 41.0 21 0.00072 26.2 3.3 69 292-365 2-75 (76)
323 2pk2_A Cyclin-T1, protein TAT; 39.1 6.3 0.00022 38.8 0.0 9 33-41 66-74 (358)
324 3q2s_C Cleavage and polyadenyl 35.8 8.5 0.00029 35.2 0.3 11 334-344 143-153 (229)
325 1h2v_Z 20 kDa nuclear CAP bind 32.8 13 0.00045 31.3 1.0 11 339-349 52-62 (156)
326 4e8u_A Putative uncharacterize 23.9 2.2E+02 0.0075 24.7 7.2 57 292-349 14-82 (172)
327 2b1x_B Naphthalene dioxygenase 21.7 3.5E+02 0.012 22.5 12.8 123 11-133 11-161 (172)
328 4giw_A RUN and SH3 domain-cont 21.1 58 0.002 28.9 3.1 47 20-71 134-184 (198)
329 3flj_A Uncharacterized protein 20.6 86 0.0029 26.7 3.9 50 16-68 21-71 (155)
No 1
>3q90_A RAS GTPase-activating protein-binding protein 1; structural genomics, structural genomics consortium, SGC, NT (A+B proteins); 1.70A {Homo sapiens} SCOP: d.17.4.0
Probab=100.00 E-value=6.9e-39 Score=281.12 Aligned_cols=128 Identities=34% Similarity=0.662 Sum_probs=114.1
Q ss_pred CCCHHHHHHHHHHHHHHHHccCchhhhccccCCceeeccCC--CCc-ccccccHHHHHHHHHhCCCCcceEEEEEeeeee
Q 012554 8 APTADIVANAFVHQYYLILHQSPQLVHRFYQDISKLGRPEE--NGA-MSITTTMQAINDKILALHYGEFSAEITTVDAQE 84 (461)
Q Consensus 8 ~~~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~l~~~~~--~~~-~~~~~g~~~I~~~~~~l~~~~~~~~I~~~d~q~ 84 (461)
.|++++||++||+|||++|+++|+.||+||.++|+|+|.+. +|+ ...+.|+++|+++|++|||++|+++|.++|||+
T Consensus 6 ~p~~~~vg~~Fv~~YY~~ld~~r~~L~~~Y~~~S~l~~~~~~~ng~~~~~~~G~~~I~~~l~~Lp~~~~~~~I~tvD~Qp 85 (140)
T 3q90_A 6 KPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMSQNFTNCHTKIRHVDAHA 85 (140)
T ss_dssp --CHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEC----------CCCEEHHHHHHHHHHHTCCCSCEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHhcCHHHHHhhcccCceEEEEccCCCCceeecccCHHHHHHHHHhCCCccceEEEEeEEEEE
Confidence 68999999999999999999999999999999999999653 454 347899999999999999999999999999999
Q ss_pred eCCCcEEEEEEEEEEcCCCCcceeEEEEEEEEeC---CeEEEEcceEEeecCCC
Q 012554 85 SYNGGVIVLVTGYLTGKDSVRRKFSQSFFLAPQD---KGYFVLNDVFRYVDDAY 135 (461)
Q Consensus 85 s~~~~ilv~V~G~~~~~~~~~~~F~q~F~L~~~~---~~y~v~nd~fr~~~~~~ 135 (461)
+++++|||+|+|+|+.++++.|+|+|+|+|++++ ++|||+||||||+|++|
T Consensus 86 s~~~gilI~V~G~l~~~~~~~~~F~QtF~L~p~~~~~~~y~V~nDifR~~de~~ 139 (140)
T 3q90_A 86 TLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVHNDIFRYQDEVF 139 (140)
T ss_dssp CGGGCEEEEEEEEEECTTCCCEEEEEEEEEEECSSSTTCEEEEEEEEEEGGGC-
T ss_pred eCCCCEEEEEEEEEecCCCCccEEEEEEEEeecCCCCCCEEEEEEEeEeehhhc
Confidence 9999999999999999999999999999999995 89999999999999986
No 2
>3ujm_A Rasputin; NTF2-like fold, RAS signaling, signaling protein; HET: EPE; 2.74A {Drosophila melanogaster}
Probab=100.00 E-value=1.8e-37 Score=265.14 Aligned_cols=118 Identities=38% Similarity=0.661 Sum_probs=109.6
Q ss_pred CHHHHHHHHHHHHHHHHccCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCCCCcceEEEEEeeeeeeCCCc
Q 012554 10 TADIVANAFVHQYYLILHQSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALHYGEFSAEITTVDAQESYNGG 89 (461)
Q Consensus 10 ~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~I~~~d~q~s~~~~ 89 (461)
|+++||++||++||++|+++|+.||+||.++|+|+|.+. +.+.|+++|+++|++|||++|+|+|.++|||++++++
T Consensus 2 s~~~vg~~Fv~~YY~~ld~~r~~L~~~Y~~~s~~~~~~~----~~~~G~~~I~~~l~~Lpf~~~~~~I~t~D~Qp~~~~g 77 (120)
T 3ujm_A 2 SHMSVGREFVRQYYTLLNKAPNHLHRFYNHNSSYIHGES----KLVVGQREIHNRIQQLNFNDCHAKISQVDAQATLGNG 77 (120)
T ss_dssp --CCHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEETTC----CCEESHHHHHHHHHHHCCCSCEEEEEEEEEEEEGGGE
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHhhhecccceEEEcCC----cEecCHHHHHHHHHcCCCcceEEEEecccceEcCCCC
Confidence 578999999999999999999999999999998877421 3899999999999999999999999999999999999
Q ss_pred EEEEEEEEEEcCCCCcceeEEEEEEEEeC-CeEEEEcceEEee
Q 012554 90 VIVLVTGYLTGKDSVRRKFSQSFFLAPQD-KGYFVLNDVFRYV 131 (461)
Q Consensus 90 ilv~V~G~~~~~~~~~~~F~q~F~L~~~~-~~y~v~nd~fr~~ 131 (461)
|||+|+|+|+.++++.|+|+|+|+|++++ ++|||+||||||+
T Consensus 78 ili~V~G~l~~~~~~~r~F~QtF~L~p~~~~~y~V~nDifR~q 120 (120)
T 3ujm_A 78 VVVQVTGELSNDGQPMRRFTQTFVLAAQSPKKYYVHNDIFRYQ 120 (120)
T ss_dssp EEEEEEEEEESTTCCCEEEEEEEEEEECSTTCEEEEEEEEEEC
T ss_pred EEEEEEEEEEeCCCCCceEEEEEEEEEcCCCCEEEEEEEEecC
Confidence 99999999999999899999999999996 8999999999995
No 3
>1zo2_A NTF2, nuclear transport factor 2; structural genomics, structural genomics consortium, SGC, transport protein; 1.60A {Cryptosporidium parvum} SCOP: d.17.4.2
Probab=100.00 E-value=1e-36 Score=263.61 Aligned_cols=123 Identities=32% Similarity=0.458 Sum_probs=117.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHccCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCCCCcceEEEEEeeeee
Q 012554 5 LHQAPTADIVANAFVHQYYLILHQSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALHYGEFSAEITTVDAQE 84 (461)
Q Consensus 5 ~~~~~~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~I~~~d~q~ 84 (461)
+...|++++||++||+|||++|+++|+.|++||.++|+|+|+|. .+.|+++|.++|.+||+++|+|+|.++|||+
T Consensus 5 ~~~~p~~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~ls~~g~-----~~~G~~~I~~~l~~Lp~~~~~h~i~t~D~qp 79 (129)
T 1zo2_A 5 INLNPQFDQIGKQFVQHYYQTFQTNRPALGGLYGPQSMLTWEDT-----QFQGQANIVNKFNSLNFQRVQFEITRVDCQP 79 (129)
T ss_dssp CBCCTTHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEETTE-----EEESHHHHHHHHHHHCCSCEEEEEEEEEEEE
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhCCCcEEEECCc-----eeccHHHHHHHHHhCCCcceEEEEEEEEEEE
Confidence 34489999999999999999999999999999999999999886 8999999999999999999999999999999
Q ss_pred eCCCcEEEEEEEEEEcCCCCcceeEEEEEEEEeC-CeEEEEcceEEeec
Q 012554 85 SYNGGVIVLVTGYLTGKDSVRRKFSQSFFLAPQD-KGYFVLNDVFRYVD 132 (461)
Q Consensus 85 s~~~~ilv~V~G~~~~~~~~~~~F~q~F~L~~~~-~~y~v~nd~fr~~~ 132 (461)
+.+++|||+|+|+|+.++++.|+|+|+|+|++++ ++|||+||||||++
T Consensus 80 ~~~~gilI~V~G~~~~~~~~~~~F~qtF~L~p~~~~~y~I~nD~fR~~~ 128 (129)
T 1zo2_A 80 SPNNGSIVFVTGDVRIDDGQPLKFSQVFNLMPSGNGGFMIFNDLFRLNL 128 (129)
T ss_dssp CTBSSEEEEEEEEEEETTCCCEEEEEEEEEEECSSSCEEEEEEEEEEC-
T ss_pred eCCCcEEEEEEEEEEECCCCcceEEEEEEEEEcCCCcEEEEeEEEEEec
Confidence 9999999999999999999999999999999998 79999999999986
No 4
>1gy6_A Nuclear transport factor 2; 1.6A {Rattus norvegicus} SCOP: d.17.4.2 PDB: 1a2k_A 1oun_A 1ar0_A 1u5o_A 1ask_A 1gy5_A 1jb5_A 1jb4_A 1jb2_A 1qma_A
Probab=100.00 E-value=1.2e-36 Score=262.49 Aligned_cols=123 Identities=23% Similarity=0.385 Sum_probs=118.7
Q ss_pred CCCHHHHHHHHHHHHHHHHccCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCCCCcceEEEEEeeeeeeCC
Q 012554 8 APTADIVANAFVHQYYLILHQSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALHYGEFSAEITTVDAQESYN 87 (461)
Q Consensus 8 ~~~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~I~~~d~q~s~~ 87 (461)
.|++++||++||+|||++|+++|+.|++||.++|+|+|++. .+.|+++|.++|.+||+++|+|+|.++|||++.+
T Consensus 4 ~p~~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~ls~~g~-----~~~G~~~I~~~l~~Lp~~~~~h~i~t~d~qp~~~ 78 (127)
T 1gy6_A 4 KPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQ-----QFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPD 78 (127)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHGGGGGGGEEEEEEEEETTE-----EEESHHHHHHHHHHCSCSCEEEEEEEEEEEECTT
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHHHHhhCCCcEEEECCc-----cccCHHHHHHHHHhCCCcceEEEEEEEEEEEeCC
Confidence 67899999999999999999999999999999999999886 8999999999999999999999999999999999
Q ss_pred CcEEEEEEEEEEcCCCCcceeEEEEEEEEeCCeEEEEcceEEeecCCC
Q 012554 88 GGVIVLVTGYLTGKDSVRRKFSQSFFLAPQDKGYFVLNDVFRYVDDAY 135 (461)
Q Consensus 88 ~~ilv~V~G~~~~~~~~~~~F~q~F~L~~~~~~y~v~nd~fr~~~~~~ 135 (461)
++|||+|+|+|+.++++.|+|+|||+|+|++++|||+||||||++..+
T Consensus 79 ~~ili~V~G~~~~~~~~~~~F~qtF~L~p~~~~~~I~nD~fr~~~~~~ 126 (127)
T 1gy6_A 79 SCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNF 126 (127)
T ss_dssp SCEEEEEEEEEEETTSCCEEEEEEEEEEEETTEEEEEEEEEEECCCCC
T ss_pred CcEEEEEEEEEEECCCCcceEeEEEEEEEeCCEEEEEEEEEEEEcccc
Confidence 999999999999999999999999999999999999999999999764
No 5
>1gy7_A Nuclear transport factor 2; protein transport; 1.6A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1gyb_A
Probab=100.00 E-value=2.7e-36 Score=259.61 Aligned_cols=119 Identities=29% Similarity=0.469 Sum_probs=114.0
Q ss_pred CHHHHHHHHHHHHHHHHccCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCCCCcceEEEEEeeeeeeC-CC
Q 012554 10 TADIVANAFVHQYYLILHQSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALHYGEFSAEITTVDAQESY-NG 88 (461)
Q Consensus 10 ~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~I~~~d~q~s~-~~ 88 (461)
++++||++||+|||++|+++|+.|++||.++|+|+|++. .+.|+++|.++|.+|||++|+|+|.++|||++. ++
T Consensus 4 ~~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~~s~~g~-----~~~G~~~I~~~l~~Lp~~~~~h~i~t~D~qp~~~~~ 78 (125)
T 1gy7_A 4 DFNTLAQNFTQFYYNQFDTDRSQLGNLYRNESMLTFETS-----QLQGAKDIVEKLVSLPFQKVQHRITTLDAQPASPYG 78 (125)
T ss_dssp CHHHHHHHHHHHHHHHHHHHGGGGGGGEEEEEEEEETTE-----EEESHHHHHHHHHHSCCSCEEEEEEEEEEEESSTTS
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHhhCCCcEEEECCc-----EecCHHHHHHHHHhCCCcceEEEEEEEEEEEecCCC
Confidence 599999999999999999999999999999999999986 899999999999999999999999999999995 58
Q ss_pred cEEEEEEEEEEcCCC-CcceeEEEEEEEEeCCeEEEEcceEEeecC
Q 012554 89 GVIVLVTGYLTGKDS-VRRKFSQSFFLAPQDKGYFVLNDVFRYVDD 133 (461)
Q Consensus 89 ~ilv~V~G~~~~~~~-~~~~F~q~F~L~~~~~~y~v~nd~fr~~~~ 133 (461)
+|||+|+|+|+.+++ +.|+|+|||+|+|++++|||+||||||++.
T Consensus 79 gili~V~G~~~~~~~~~~~~F~qtF~L~p~~~~~~I~nD~fr~~~~ 124 (125)
T 1gy7_A 79 DVLVMITGDLLIDEEQNPQRFSQVFHLIPDGNSYYVFNDIFRLNYS 124 (125)
T ss_dssp CEEEEEEEEEEETTCSSCEEEEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred eEEEEEEEEEEECCCCCCccEeEEEEEEEeCCEEEEEEEEEEEecC
Confidence 999999999999887 899999999999999999999999999974
No 6
>2qiy_A UBP3-associated protein BRE5; deubiquitylation, ubiquitin-specific processing proteases(UB NTF2, protein-protein recognition; 1.69A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1zx2_A
Probab=100.00 E-value=3.2e-35 Score=262.19 Aligned_cols=129 Identities=20% Similarity=0.360 Sum_probs=116.7
Q ss_pred CCCHHHHHHHHHHHHHHHHccCchhhhccccCCceeeccCCCCc----------ccccccHHHHHHHHHhC--CCCcceE
Q 012554 8 APTADIVANAFVHQYYLILHQSPQLVHRFYQDISKLGRPEENGA----------MSITTTMQAINDKILAL--HYGEFSA 75 (461)
Q Consensus 8 ~~~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~l~~~~~~~~----------~~~~~g~~~I~~~~~~l--~~~~~~~ 75 (461)
.|++++||++||+|||++|+++|+.|++||.++|+|+|++..+. ...+.|+++|.++|.+| ||++|+|
T Consensus 8 ~p~~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~~s~~~~~~~s~~~~~d~~~~~~~~G~~~I~~~l~~L~~pf~~~~h 87 (154)
T 2qiy_A 8 GVTVQDICFAFLQNYYERMRTDPSKLAYFYASTAELTHTNYQSKSTNEKDDVLPTVKVTGRENINKFFSRNDAKVRSLKL 87 (154)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEEECTTCC----CCSSCCEEEEESHHHHHHHHHHTHHHHTTEEE
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHHHHhhCCCcEEEEccccccccccccccccceEeeCHHHHHHHHHhccCCCCceEE
Confidence 57899999999999999999999999999999999999843221 46899999999999999 9999999
Q ss_pred EEEEeeeeeeCC--CcEEEEEEEEEEcCCCCcceeEEEEEEEEeC--CeEEEEcceEEeecCCCC
Q 012554 76 EITTVDAQESYN--GGVIVLVTGYLTGKDSVRRKFSQSFFLAPQD--KGYFVLNDVFRYVDDAYH 136 (461)
Q Consensus 76 ~I~~~d~q~s~~--~~ilv~V~G~~~~~~~~~~~F~q~F~L~~~~--~~y~v~nd~fr~~~~~~~ 136 (461)
+|.++|||++++ ++|||+|+|+|+.++++.|+|+|||+|++++ ++|||+||||||+++++.
T Consensus 88 ~I~s~D~q~~~~~~~~ilI~V~G~~~~~~~~~r~F~qtFvL~p~~~~~~y~I~ND~fr~~~~~~~ 152 (154)
T 2qiy_A 88 KLDTIDFQYTGHLHKSILIMATGEMFWTGTPVYKFCQTFILLPSSNGSTFDITNDIIRFISNSFK 152 (154)
T ss_dssp EEEEEEEEEESGGGCEEEEEEEEEEEETTCCCEEEEEEEEEEECC---CEEEEEEEEEEECC---
T ss_pred EEEEEEEEEccCCCCEEEEEEEEEEEECCCCCceEEEEEEEEEeCCCCcEEEEEEEEEEEcceec
Confidence 999999999987 8999999999999999999999999999997 589999999999998764
No 7
>3nv0_B NTF2-related export protein; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans}
Probab=100.00 E-value=2.1e-34 Score=255.22 Aligned_cols=117 Identities=26% Similarity=0.388 Sum_probs=111.2
Q ss_pred CCHHHHHHHHHHHHHHHHccCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCCCCcceEEEEEeeeeeeC--
Q 012554 9 PTADIVANAFVHQYYLILHQSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALHYGEFSAEITTVDAQESY-- 86 (461)
Q Consensus 9 ~~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~I~~~d~q~s~-- 86 (461)
-.+.+||++||+|||++|+++|+.|++||.++|+|+|++. .+.|+++|.++|++||+ |+++|.++|||+++
T Consensus 31 ~~a~~vg~~FV~qYY~~~d~~R~~L~~fY~d~S~ls~~g~-----~~~G~~~I~~~l~~Lp~--~~h~I~s~D~qp~~~~ 103 (154)
T 3nv0_B 31 EELCNESKKFMDVYYDVMDRKREKIGFLYTQVSNAVWNGN-----PINGYDSICEFMKALPS--TQHDIQSLDAQRLPEG 103 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEETTE-----EEESHHHHHHHHHHSCC--EEEEEEEEEEEECCTT
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHhcCCcEEEECCe-----ecccHHHHHHHHHhCCC--eEEEEEEEEEEEcCcc
Confidence 3567899999999999999999999999999999999986 88999999999999997 69999999999998
Q ss_pred -----CCcEEEEEEEEEEcCCCCcceeEEEEEEEEeCCeEEEEcceEEeec
Q 012554 87 -----NGGVIVLVTGYLTGKDSVRRKFSQSFFLAPQDKGYFVLNDVFRYVD 132 (461)
Q Consensus 87 -----~~~ilv~V~G~~~~~~~~~~~F~q~F~L~~~~~~y~v~nd~fr~~~ 132 (461)
+++|||+|+|+|+.++++.|+|+|+|+|+|++++|||+||||||+|
T Consensus 104 ~~~q~~~~ilI~V~G~l~~~~~~~r~F~QtFvL~p~~~~y~V~NDifR~vd 154 (154)
T 3nv0_B 104 VTGDMSGGMLLNVAGAVTVDGDSKRAFTQTLLLGVEDGKYKVKSDRFRYVD 154 (154)
T ss_dssp CCGGGTTCEEEEEEEEEEETTSCCEEEEEEEEEEEETTEEEEEEEEEEECC
T ss_pred ccCCCCCeEEEEEEEEEEECCCCceeEEEEEEEEEeCCEEEEEeeEEEecC
Confidence 6789999999999999889999999999999999999999999986
No 8
>1jkg_A P15; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_A
Probab=100.00 E-value=1.4e-32 Score=241.22 Aligned_cols=118 Identities=24% Similarity=0.370 Sum_probs=111.6
Q ss_pred CCHHHHHHHHHHHHHHHHccCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCCCCcceEEEEEeeeeeeC--
Q 012554 9 PTADIVANAFVHQYYLILHQSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALHYGEFSAEITTVDAQESY-- 86 (461)
Q Consensus 9 ~~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~I~~~d~q~s~-- 86 (461)
..+.+||++||++||++|+++|+.|++||.++|+|+|+|. .+.|+++|.++|.+||++ +|+|.++|||++.
T Consensus 11 ~~a~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~ls~~g~-----~~~G~~~I~~~l~~Lp~~--~h~i~s~d~q~~~~~ 83 (140)
T 1jkg_A 11 DQACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGN-----AVSGQESLSEFFEMLPSS--EFQISVVDCQPVHDE 83 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEETTE-----EEESHHHHHHHHHHSCCE--EEEEEEEEEEECCTT
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHhcCCCcEEEECCe-----eecCHHHHHHHHHhCCCc--eeEEEEEEEEEcCCc
Confidence 4688999999999999999999999999999999999885 899999999999999999 6899999999996
Q ss_pred ----CCcEEEEEEEEEEcCCCCcceeEEEEEEEEeC----CeEEEEcceEEeecC
Q 012554 87 ----NGGVIVLVTGYLTGKDSVRRKFSQSFFLAPQD----KGYFVLNDVFRYVDD 133 (461)
Q Consensus 87 ----~~~ilv~V~G~~~~~~~~~~~F~q~F~L~~~~----~~y~v~nd~fr~~~~ 133 (461)
+++|||+|+|+|+.++++.|+|+|||+|++++ ++|||+||||||+++
T Consensus 84 ~~~~~~~ilI~V~G~~~~~~~~~r~F~qtF~L~p~~~p~~~~~~I~nD~frl~~~ 138 (140)
T 1jkg_A 84 ATPSQTTVLVVICGSVKFEGNKQRDFNQNFILTAQASPSNTVWKIASDCFRFQDW 138 (140)
T ss_dssp TSTTCCEEEEEEEEEEEETTSCCEEEEEEEEEEEECCSSSCEEEEEEEEEEETTT
T ss_pred ccCCCCeEEEEEEEEEEECCCCceeeeEEEEEEecCCCCCCeEEEEeeEEEeecC
Confidence 58999999999999999999999999999974 799999999999986
No 9
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
Probab=99.84 E-value=7.1e-21 Score=182.24 Aligned_cols=124 Identities=18% Similarity=0.206 Sum_probs=107.3
Q ss_pred CCHHHHHHHHHHHHHHHHccC-chhhhccccCCceeeccCCCCc----------------------------ccccccHH
Q 012554 9 PTADIVANAFVHQYYLILHQS-PQLVHRFYQDISKLGRPEENGA----------------------------MSITTTMQ 59 (461)
Q Consensus 9 ~~~~~vg~~Fv~~YY~~l~~~-p~~l~~fY~~~s~l~~~~~~~~----------------------------~~~~~g~~ 59 (461)
....+|+..||++||+++|++ |..|.+||+++|+|+|...... ...+.|.+
T Consensus 12 ~~~~~~~~~Fv~~Yy~~fD~~~R~~L~~lY~~~s~fS~~~~~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~~~~G~~ 91 (250)
T 1jkg_B 12 ENLKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSIPFIPQNPARSSLAEYFKDSRNVKKLKDPTLRFRLLKHTRL 91 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCGGGGGGTEEEEEEEEEECCCC------CCCHHHHTTBCCTTTCCCHHHHHHHSEESHH
T ss_pred HHHHHHHHHHHHHHHHHHCcCcHHHHHHhhCcCcEEEEEeCCCCCCccccchhhhhhhccchhcccchhhhhhhhccCHH
Confidence 446689999999999999998 9999999999999998732100 03679999
Q ss_pred HHHHHHHhCCCCcceEEEE--EeeeeeeCCCcEEEEEEEEEEcCC----CCcceeEEEEEEEEe-CCeEEEEcceEEeec
Q 012554 60 AINDKILALHYGEFSAEIT--TVDAQESYNGGVIVLVTGYLTGKD----SVRRKFSQSFFLAPQ-DKGYFVLNDVFRYVD 132 (461)
Q Consensus 60 ~I~~~~~~l~~~~~~~~I~--~~d~q~s~~~~ilv~V~G~~~~~~----~~~~~F~q~F~L~~~-~~~y~v~nd~fr~~~ 132 (461)
+|.++|.+||.. +|.|. ++|+|+..+++|+|+|+|.++..+ ...|.|+|||+|.+. +++|+|+||+||+.+
T Consensus 92 ~I~~~l~~LP~t--~H~~~s~~vD~~~~~~~~i~i~V~G~f~e~~~~~~~~~r~F~rtFvL~p~~~~~~~I~ND~l~l~~ 169 (250)
T 1jkg_B 92 NVVAFLNELPKT--QHDVNSFVVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDELFVRN 169 (250)
T ss_dssp HHHHHHTTSCCE--EECGGGCEEEEEEECSSCEEEEEEEEEEECSSTTTTCEEEEEEEEEEEECTTSSEEEEEEEEEEEE
T ss_pred HHHHHHHhCCCe--eEeccceEEeeeecCCCEEEEEEEEEEEECCCCCCCCceeeEEEEEEEECCCCcEEEEeeEEEEEC
Confidence 999999999955 77777 899999988899999999999865 578999999999996 568999999999997
Q ss_pred CC
Q 012554 133 DA 134 (461)
Q Consensus 133 ~~ 134 (461)
..
T Consensus 170 ~s 171 (250)
T 1jkg_B 170 AS 171 (250)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 10
>1of5_A MRNA export factor MEX67; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2
Probab=99.84 E-value=4.4e-21 Score=178.82 Aligned_cols=124 Identities=9% Similarity=0.259 Sum_probs=105.1
Q ss_pred CCHHHHHHHHHHHHHHHHccCchhhhccccCCceeeccCCCCc----------------------------------ccc
Q 012554 9 PTADIVANAFVHQYYLILHQSPQLVHRFYQDISKLGRPEENGA----------------------------------MSI 54 (461)
Q Consensus 9 ~~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~l~~~~~~~~----------------------------------~~~ 54 (461)
.....|+..||++||++++++|..|..||.++|+|+|...... ...
T Consensus 8 ~~~~~~~~~Fv~~Yy~~fDsdR~~L~~lY~~~S~fS~s~~~~~p~~~~~~~~~~~~~~~Y~~~SRNl~ri~~~~~r~~~l 87 (221)
T 1of5_A 8 DALGQSSTDFATNFLNLWDNNREQLLNLYSPQSQFSVSVDSTIPPSTVTDSDQTPAFGYYMSSSRNISKVSSEKSIQQRL 87 (221)
T ss_dssp CTTCHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEEEECCC--------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHhhCcCcEEEEEecCCCCcccccccccccchhhhhhhccchhcccchhhhhhhh
Confidence 4567899999999999999999999999999999988663110 136
Q ss_pred cccHHHHHHHHHhCCCCcceEEE------EEeeeeeeCC-CcEEEEEEEEEEcCCC------------------------
Q 012554 55 TTTMQAINDKILALHYGEFSAEI------TTVDAQESYN-GGVIVLVTGYLTGKDS------------------------ 103 (461)
Q Consensus 55 ~~g~~~I~~~~~~l~~~~~~~~I------~~~d~q~s~~-~~ilv~V~G~~~~~~~------------------------ 103 (461)
+.|.++|.++|.+||.+ +|.| .+||||+... ++|||+|+|.+...+.
T Consensus 88 ~~G~~~I~~~l~~LPkT--~H~l~~~~~s~~vD~~~~~~~~~i~itV~G~f~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (221)
T 1of5_A 88 SIGQESINSIFKTLPKT--KHHLQEQPNEYSMETISYPQINGFVITLHGFFEETGKPELESNKKTGKNNYQKNRRYNHGY 165 (221)
T ss_dssp CBHHHHHHHHHHHSCCE--EECTTTSGGGCEEEEEEEGGGTEEEEEEEEEEEEC--------------------------
T ss_pred ccCHHHHHHHHHhCCCe--eEecccCCCceEEEeEEcCCCCeEEEEEEEEEEECCCcccccccccccccccccccccccc
Confidence 78999999999999955 8999 6999999865 6899999999986544
Q ss_pred --------CcceeEEEEEEEEeCCeEEEEcceEEeecCC
Q 012554 104 --------VRRKFSQSFFLAPQDKGYFVLNDVFRYVDDA 134 (461)
Q Consensus 104 --------~~~~F~q~F~L~~~~~~y~v~nd~fr~~~~~ 134 (461)
..|.|+|||+|.|.+++|+|+||+|++-...
T Consensus 166 ~~~~~~~~~~rsF~RTFvL~P~~~~~~I~nD~l~ir~~s 204 (221)
T 1of5_A 166 NSTSNNKLSKKSFDRTWVIVPMNNSVIIASDLLTVRAYS 204 (221)
T ss_dssp ---CCSCCEEEEEEEEEEEEEETTEEEEEEEEEEEEECC
T ss_pred cccccccCCccceEEEEEEEecCCeEEEEeeEEEeecCC
Confidence 4699999999999988999999999988764
No 11
>1q40_B MEX67, mRNA export factor MEX67; NTF2-fold, nuclear export, translation; 1.95A {Candida albicans} SCOP: d.17.4.2
Probab=99.81 E-value=7e-20 Score=170.63 Aligned_cols=124 Identities=13% Similarity=0.241 Sum_probs=102.0
Q ss_pred CCHHHHHHHHHHHHHHHHccCchhhhccccCCceeeccCCCCc-------------------------------------
Q 012554 9 PTADIVANAFVHQYYLILHQSPQLVHRFYQDISKLGRPEENGA------------------------------------- 51 (461)
Q Consensus 9 ~~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~l~~~~~~~~------------------------------------- 51 (461)
.....|+..||++||++++++|..|..||+++|+|+|......
T Consensus 11 ~~~~~~~~~Fl~~Yy~~fDsdR~~L~~lY~~~S~fS~s~~~~~p~~~~~~~~~~~~~~~~~~Y~~~SRNl~ri~~~~~r~ 90 (219)
T 1q40_B 11 EDSRNLATNFIANYLKLWDANRSELMILYQNESQFSMQVDSSHPHLIESGNSGYSGSTDFGYYLNNSRNLTRVSSIKARM 90 (219)
T ss_dssp --CHHHHHHHHHHHHHHHHSCGGGGGGGCCTTCEEEEEECTTCCCCCCCB------SCCCTTTTTTCCCTTTCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHhhccccEEEEEecCCCCccccccccccccccchhhhhhhccchhcccchhhhh
Confidence 4568899999999999999999999999999999988742100
Q ss_pred ccccccHHHHHHHHHhCCCCcceEEE------EEeeeeeeC-CCcEEEEEEEEEEcCC----------------------
Q 012554 52 MSITTTMQAINDKILALHYGEFSAEI------TTVDAQESY-NGGVIVLVTGYLTGKD---------------------- 102 (461)
Q Consensus 52 ~~~~~g~~~I~~~~~~l~~~~~~~~I------~~~d~q~s~-~~~ilv~V~G~~~~~~---------------------- 102 (461)
.....|.++|.++|.+||.+ +|.| .+||||+.. .++|||+|+|.+...+
T Consensus 91 ~~l~~G~~~I~~~l~~LPkT--~H~l~~~~~s~~vD~~~~p~~~~ilitV~G~f~e~~~~~~~~~~~~~~~~~~~~~~~~ 168 (219)
T 1q40_B 91 AKLSIGQEQIYKSFQQLPKT--RHDIIATPELFSMEVYKFPTLNGIMITLHGSFDEVAQPEVDGSASSAPSGPRGGSRYH 168 (219)
T ss_dssp HTCEEHHHHHHHHHHTSCEE--ECCTTTCGGGCEEEEEECSSTTCEEEEEEEEEEEEECCSSCCCC----------CCSS
T ss_pred hhhccCHHHHHHHHHHCCCe--eEecccCCCceEEEeEecCCCCeEEEEEEEEEEECCCccccccccccccccccccccc
Confidence 01577999999999999954 8899 699999653 4689999999997533
Q ss_pred ---------CCcceeEEEEEEEEe-CCeEEEEcceEEeecCC
Q 012554 103 ---------SVRRKFSQSFFLAPQ-DKGYFVLNDVFRYVDDA 134 (461)
Q Consensus 103 ---------~~~~~F~q~F~L~~~-~~~y~v~nd~fr~~~~~ 134 (461)
...|.|+|||+|.+. +++|+|+||+|++-...
T Consensus 169 ~~~~~~~~~~~~rsF~RtFvL~P~~~~~~~I~nD~l~ir~~~ 210 (219)
T 1q40_B 169 SGPKHKRIPLSKKSFDRTFVVIPGPNGSMIVASDTLLIRPYT 210 (219)
T ss_dssp SSSCCCCCCCCCEEEEEEEEEECC---CCEEEEEEEEEEECC
T ss_pred cccccccccCCccceEEEEEEEECCCCcEEEEeeEEEEecCC
Confidence 257999999999999 57999999999998764
No 12
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.75 E-value=5e-18 Score=151.16 Aligned_cols=80 Identities=15% Similarity=0.176 Sum_probs=72.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc--CCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ--KGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~--k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
.+.++|||+|||+++|+++|+++|++||.|..|.|..+.. ++++||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4579999999999999999999999999999977766543 37899999999999999999998 99999999999999
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
++.
T Consensus 117 ~~~ 119 (156)
T 1h2v_Z 117 AGF 119 (156)
T ss_dssp SCC
T ss_pred CCC
Confidence 875
No 13
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.73 E-value=3e-18 Score=162.43 Aligned_cols=79 Identities=16% Similarity=0.190 Sum_probs=70.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCC--CeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEee
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFG--TIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEP 363 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G--~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~ 363 (461)
..++|||+||++++|+++|+++|++|| .|+.|.|..+. .+++|||||+|.+.++|++||+.+ +..|+|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 468999999999999999999999999 99997776653 337899999999999999999988 8999999999999
Q ss_pred cccc
Q 012554 364 KKST 367 (461)
Q Consensus 364 a~~~ 367 (461)
+++.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8765
No 14
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-15 Score=133.19 Aligned_cols=80 Identities=21% Similarity=0.333 Sum_probs=72.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc--CCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ--KGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~--k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
...++|||+|||+++++++|+++|++||.|..+.|..+.. +++|||||+|.+.++|.+||+.+ +..|+|+.|+|+++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5679999999999999999999999999999977766543 36899999999999999999988 99999999999999
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
+++
T Consensus 120 ~~~ 122 (139)
T 1u6f_A 120 ASG 122 (139)
T ss_dssp SCC
T ss_pred CCC
Confidence 875
No 15
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=131.27 Aligned_cols=79 Identities=16% Similarity=0.345 Sum_probs=72.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc--CCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ--KGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~--k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
.++++|||+|||+++|+++|+++|++||.|..+.|..+.. +++|||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 5688999999999999999999999999999977766533 37899999999999999999987 99999999999999
Q ss_pred cc
Q 012554 365 KS 366 (461)
Q Consensus 365 ~~ 366 (461)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 87
No 16
>3nv0_A Nuclear RNA export factor 2; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans}
Probab=99.65 E-value=7.3e-16 Score=142.47 Aligned_cols=122 Identities=16% Similarity=0.154 Sum_probs=98.7
Q ss_pred CHHHHHHHHHHHHHHHHccC-----chhhhcccc-CCceeec--cCC-----------------------------C---
Q 012554 10 TADIVANAFVHQYYLILHQS-----PQLVHRFYQ-DISKLGR--PEE-----------------------------N--- 49 (461)
Q Consensus 10 ~~~~vg~~Fv~~YY~~l~~~-----p~~l~~fY~-~~s~l~~--~~~-----------------------------~--- 49 (461)
....++..|+++||.+++++ |..|..+|+ ++|+++. +-. +
T Consensus 11 ~~~~~v~~Fl~~yf~~yD~~d~~~~R~~Ll~~Y~~~~a~FSltv~~~~~p~~~~~~~~~~~~~~Y~~~SRNl~k~~~~~~ 90 (205)
T 3nv0_A 11 EVRTLVEEFIITYYKIYDGADGQQTRKQLLDAYDTNNSTFTHTVVCLWDPIKFVMYPDSESYRMYLRTSHNVLNQEYFAA 90 (205)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTHHHHGGGGGGGBCSSSCEEEEEEECCCCSSSCCCCSCHHHHHHHHHTCCCGGGCCTTTT
T ss_pred HHHHHHHHHHHHHHHHhcCCCchhhHHHHHHhhCccCcEEEEEecCCCCcccccccccccchhhhhhhccccccccccHH
Confidence 45678999999999999987 999999999 6886632 100 0
Q ss_pred C-cccccccHHHHHHHHHhCCCCcceEEEEE--eeeeeeCCCcEEEEEEEEEEcC---------CCCcceeEEEEEEEEe
Q 012554 50 G-AMSITTTMQAINDKILALHYGEFSAEITT--VDAQESYNGGVIVLVTGYLTGK---------DSVRRKFSQSFFLAPQ 117 (461)
Q Consensus 50 ~-~~~~~~g~~~I~~~~~~l~~~~~~~~I~~--~d~q~s~~~~ilv~V~G~~~~~---------~~~~~~F~q~F~L~~~ 117 (461)
- ......|.++|.++|.+||.+ +|.|.+ ||||+..++.|+|+|+|.++.. +...|.|+|||+|.|.
T Consensus 91 ~r~~~L~~G~~~I~~~L~~LP~T--~H~~~s~~vD~~p~~~~~l~i~V~G~f~e~~~~~~~~~~~~~~r~FsRtFiL~P~ 168 (205)
T 3nv0_A 91 NRASRISHGAMDIVVALSRLPAT--IHLMDTFVVDVFLVSATLLGFTLHGTFRDGPSAIKPENTEEHDNYFTRTFMVAPR 168 (205)
T ss_dssp SSCCSCEEHHHHHHHHHHHSCCE--EECGGGCEEEEEEECSSCEEEEEEEEEEETHHHHSCCSCSTTCEEEEEEEEEEEC
T ss_pred HHHHHHhhCHHHHHHHHHhCCCe--EEecCceEEEEEEeCCCeEEEEEEEEEEEcccccccccCCCCCceeEEEEEEEEC
Confidence 0 012347999999999999966 888875 8999999889999999999964 3567999999999998
Q ss_pred C-CeEEEEcceEEeecC
Q 012554 118 D-KGYFVLNDVFRYVDD 133 (461)
Q Consensus 118 ~-~~y~v~nd~fr~~~~ 133 (461)
+ ++|+|+||+|-.-..
T Consensus 169 ~~g~~~I~ND~L~Ir~~ 185 (205)
T 3nv0_A 169 GEGKVAIVSDQLFISSM 185 (205)
T ss_dssp STTCEEEEEEEEEEECC
T ss_pred CCCcEEEEecEEEeeCC
Confidence 5 789999999965443
No 17
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.64 E-value=6.1e-16 Score=130.57 Aligned_cols=78 Identities=28% Similarity=0.445 Sum_probs=72.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecccc
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKST 367 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~~ 367 (461)
..+|||+|||+++|+++|+++|++||.|..|.|..+.++++|||||+|.+.++|++||+.+ +..|+|+.|+|++++++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 5689999999999999999999999999998887776668999999999999999999987 99999999999998875
No 18
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.8e-15 Score=123.56 Aligned_cols=80 Identities=21% Similarity=0.296 Sum_probs=72.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeeccc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKS 366 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~ 366 (461)
.+.++|||+|||+++++++|+++|++||.|..|.|..+...+++||||+|.+.++|++||+.+ +..|+|+.|+|+++++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence 568999999999999999999999999999997666554557899999999999999999977 9999999999999987
Q ss_pred c
Q 012554 367 T 367 (461)
Q Consensus 367 ~ 367 (461)
+
T Consensus 93 ~ 93 (103)
T 2cqi_A 93 P 93 (103)
T ss_dssp T
T ss_pred C
Confidence 6
No 19
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.8e-15 Score=124.98 Aligned_cols=79 Identities=30% Similarity=0.454 Sum_probs=70.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeeccc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKS 366 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~ 366 (461)
.+.++|||+|||+++|+++|+++|++||.|..+.|.. ..++++||||+|.+.++|++||+.+ +..|+|+.|+|+++++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN-RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC-SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE-CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 4578999999999999999999999999999865522 2237899999999999999999887 9999999999999987
Q ss_pred c
Q 012554 367 T 367 (461)
Q Consensus 367 ~ 367 (461)
+
T Consensus 99 ~ 99 (109)
T 1x4a_A 99 G 99 (109)
T ss_dssp C
T ss_pred C
Confidence 5
No 20
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.9e-15 Score=122.15 Aligned_cols=80 Identities=23% Similarity=0.329 Sum_probs=73.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeeccc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKS 366 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~ 366 (461)
.+.++|||+|||+++++++|+++|++||.|..+.|..+..++++||||+|.+.++|++||+.+ +..|+|+.|+|+++++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 567999999999999999999999999999997666555457899999999999999999987 9999999999999988
Q ss_pred c
Q 012554 367 T 367 (461)
Q Consensus 367 ~ 367 (461)
+
T Consensus 93 ~ 93 (103)
T 2cq3_A 93 R 93 (103)
T ss_dssp S
T ss_pred C
Confidence 6
No 21
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=3.3e-15 Score=121.17 Aligned_cols=79 Identities=19% Similarity=0.348 Sum_probs=71.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecc
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKK 365 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~ 365 (461)
+.++|||+|||.++++++|+++|++||.|..+.|..+. .++++||||+|.+.++|++||+.+ +..|+|+.|+|++++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 47899999999999999999999999999997665543 237899999999999999999987 999999999999998
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
++
T Consensus 84 ~~ 85 (95)
T 2dnz_A 84 ER 85 (95)
T ss_dssp CC
T ss_pred cc
Confidence 76
No 22
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=6.1e-15 Score=124.32 Aligned_cols=81 Identities=25% Similarity=0.375 Sum_probs=71.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhCCCcccCceeEEeec
Q 012554 287 EAEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEPK 364 (461)
Q Consensus 287 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~a 364 (461)
+.+.++|||+|||+++|+++|+++|++||.|..+.|..+. .++++||||+|.+.++|++||+.+...|+|+.|+|+++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 93 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLA 93 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEc
Confidence 3568999999999999999999999999999986654432 23789999999999999999999944899999999999
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
+.+
T Consensus 94 ~~~ 96 (116)
T 2cqd_A 94 YLG 96 (116)
T ss_dssp TTT
T ss_pred ccC
Confidence 765
No 23
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=5.3e-15 Score=123.23 Aligned_cols=75 Identities=19% Similarity=0.295 Sum_probs=67.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccC-----ceeEE
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISG-----HRVVV 361 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g-----~~i~V 361 (461)
...++|||+|||+++|+++|+++|++||.|..+.| ..+ +||||+|.+.++|++||+.+ +..|+| +.|+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i--~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADV--YRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEE--ETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEE--ecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 34789999999999999999999999999998655 332 89999999999999999998 999999 99999
Q ss_pred eecccc
Q 012554 362 EPKKST 367 (461)
Q Consensus 362 ~~a~~~ 367 (461)
++++++
T Consensus 88 ~~a~~~ 93 (108)
T 1x4c_A 88 KVDGPR 93 (108)
T ss_dssp EESSCC
T ss_pred EeCCCC
Confidence 999886
No 24
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=3.7e-15 Score=122.84 Aligned_cols=80 Identities=20% Similarity=0.342 Sum_probs=73.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeeccc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKS 366 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~ 366 (461)
.+.++|||+|||+++|+++|+++|++||.|..+.|..+..+.++||||+|.+.++|++||+.+ +..|+|+.|+|+++++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 92 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecc
Confidence 568999999999999999999999999999998776664457899999999999999999987 9999999999999988
Q ss_pred c
Q 012554 367 T 367 (461)
Q Consensus 367 ~ 367 (461)
+
T Consensus 93 ~ 93 (103)
T 2d9p_A 93 K 93 (103)
T ss_dssp C
T ss_pred c
Confidence 6
No 25
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=3.9e-15 Score=121.75 Aligned_cols=80 Identities=19% Similarity=0.281 Sum_probs=71.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
.+.++|||+|||+++|+++|+++|++||.|..+.|..+. .++++||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 457899999999999999999999999999986554442 237899999999999999999888 99999999999999
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
+++
T Consensus 86 ~~~ 88 (99)
T 1whw_A 86 TIK 88 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 886
No 26
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=3.8e-15 Score=121.58 Aligned_cols=80 Identities=26% Similarity=0.459 Sum_probs=72.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc-----CCccEEEEEEccHHHHHHHHHhC-CCcccCceeEE
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ-----KGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVV 361 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~-----k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V 361 (461)
.+.++|||+|||+++++++|+++|++||.|..+.|..+.. ++++||||+|.+.++|++||+.+ +..|+|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3578999999999999999999999999999987766544 46899999999999999999998 99999999999
Q ss_pred eecccc
Q 012554 362 EPKKST 367 (461)
Q Consensus 362 ~~a~~~ 367 (461)
++++++
T Consensus 83 ~~a~~~ 88 (98)
T 2cpf_A 83 RISERA 88 (98)
T ss_dssp ECSSCS
T ss_pred EEccCC
Confidence 999876
No 27
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.61 E-value=4.4e-15 Score=125.03 Aligned_cols=80 Identities=26% Similarity=0.473 Sum_probs=72.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
.+.++|||+|||+++++++|+++|++||.|..+.|..+. .++++||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 457899999999999999999999999999997776653 237899999999999999999887 99999999999999
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
+++
T Consensus 103 ~~~ 105 (115)
T 2cpz_A 103 RSK 105 (115)
T ss_dssp CCS
T ss_pred CCC
Confidence 886
No 28
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.61 E-value=1.3e-15 Score=130.44 Aligned_cols=80 Identities=21% Similarity=0.300 Sum_probs=71.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEe--CcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVK--TQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~--~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
.+.++|||+|||+++|+++|+++|++||.|..+.|..+ ..+++|||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 45789999999999999999999999999998655444 2236899999999999999999987 99999999999999
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
+++
T Consensus 100 ~~~ 102 (126)
T 3ex7_B 100 FVR 102 (126)
T ss_dssp EES
T ss_pred cCC
Confidence 876
No 29
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.60 E-value=4.5e-15 Score=119.59 Aligned_cols=80 Identities=21% Similarity=0.380 Sum_probs=72.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeeccc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKS 366 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~ 366 (461)
.+.++|||+|||+++++++|+++|++||.|..+.|..+..+.++||||+|.+.++|++||+.+ +..|+|+.|+|+++++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 457899999999999999999999999999998776655557899999999999999999987 9999999999999987
Q ss_pred c
Q 012554 367 T 367 (461)
Q Consensus 367 ~ 367 (461)
+
T Consensus 86 ~ 86 (92)
T 2dgv_A 86 A 86 (92)
T ss_dssp C
T ss_pred C
Confidence 5
No 30
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.60 E-value=1.5e-14 Score=121.58 Aligned_cols=80 Identities=19% Similarity=0.307 Sum_probs=72.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
.+.++|||+|||+++++++|+++|++||.|..+.|..+. .+.++||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 568999999999999999999999999999997776552 336899999999999999999988 99999999999999
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
+++
T Consensus 93 ~~~ 95 (115)
T 2dgo_A 93 TRK 95 (115)
T ss_dssp SCC
T ss_pred cCC
Confidence 886
No 31
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.60 E-value=6.7e-15 Score=124.39 Aligned_cols=80 Identities=21% Similarity=0.333 Sum_probs=71.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC-cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT-QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKK 365 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~-~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~ 365 (461)
.+.++|||+|||+++|+++|+++|++||.|..+.|..+. .+++|||||+|.+.++|++||+.+ +..|+|+.|+|++++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 457899999999999999999999999999987665543 237899999999999999999998 999999999999998
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
++
T Consensus 85 ~~ 86 (116)
T 2fy1_A 85 KP 86 (116)
T ss_dssp CS
T ss_pred CC
Confidence 75
No 32
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.60 E-value=3.2e-15 Score=125.25 Aligned_cols=80 Identities=13% Similarity=0.197 Sum_probs=72.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc--CCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ--KGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~--k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
.+.++|||+||++++++++|+++|++||.|..+.|..+.. +++|||||+|++.++|++||+.+ +..|+|+.|+|+++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3578999999999999999999999999999987766643 47999999999999999999988 99999999999998
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
+.+
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 765
No 33
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=8.1e-15 Score=121.18 Aligned_cols=80 Identities=23% Similarity=0.352 Sum_probs=71.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
.+.++|||+|||+++++++|+++|++||.|..+.|..+. .+++|||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 457899999999999999999999999999986654432 237899999999999999999998 99999999999999
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
+++
T Consensus 93 ~~~ 95 (105)
T 1x5u_A 93 SAH 95 (105)
T ss_dssp TTT
T ss_pred CCC
Confidence 876
No 34
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.59 E-value=1e-14 Score=120.60 Aligned_cols=80 Identities=18% Similarity=0.203 Sum_probs=71.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc-CCccEEEEEEccHHHHHHHHHhC-CCcccC---ceeEEe
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ-KGFCFGFVEFEEENAVQSAIEAS-PIVISG---HRVVVE 362 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~-k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g---~~i~V~ 362 (461)
.+.++|||+|||+++++++|+++|++||.|..+.|..+.. ++++||||+|.+.++|++||+.+ +..|.| +.|+|+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 5589999999999999999999999999999977765532 26899999999999999999987 888887 999999
Q ss_pred ecccc
Q 012554 363 PKKST 367 (461)
Q Consensus 363 ~a~~~ 367 (461)
+++++
T Consensus 93 ~a~~~ 97 (105)
T 2dnh_A 93 FADTD 97 (105)
T ss_dssp ESCSS
T ss_pred ECccC
Confidence 99886
No 35
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=8.2e-15 Score=117.79 Aligned_cols=74 Identities=24% Similarity=0.422 Sum_probs=68.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeeccc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKS 366 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~ 366 (461)
.+.++|||+|||+++++++|+++|++||.|..+.|. ++||||+|.+.++|++||+.+ +..|+|+.|+|+++++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 457899999999999999999999999999986553 689999999999999999888 8899999999999987
Q ss_pred c
Q 012554 367 T 367 (461)
Q Consensus 367 ~ 367 (461)
+
T Consensus 80 ~ 80 (90)
T 2dnq_A 80 K 80 (90)
T ss_dssp C
T ss_pred C
Confidence 6
No 36
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.1e-14 Score=119.05 Aligned_cols=80 Identities=26% Similarity=0.471 Sum_probs=70.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhCCCcccCceeEEeecc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEPKK 365 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~a~ 365 (461)
.+.++|||+|||.++++++|+++|++||.|..+.|..+. .+++|||||+|.+.++|++||+..+..|+|+.|+|++++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~ 87 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE 87 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 457999999999999999999999999999986654432 237899999999999999999944999999999999998
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
++
T Consensus 88 ~~ 89 (99)
T 2dgs_A 88 PR 89 (99)
T ss_dssp CC
T ss_pred CC
Confidence 76
No 37
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=7.3e-15 Score=121.80 Aligned_cols=80 Identities=25% Similarity=0.396 Sum_probs=71.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEe---CcCCccEEEEEEccHHHHHHHHHhC--CCcccCceeEEe
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVK---TQKGFCFGFVEFEEENAVQSAIEAS--PIVISGHRVVVE 362 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~---~~k~~g~aFVeF~~~~~a~~Al~~~--~~~i~g~~i~V~ 362 (461)
.+.++|||+|||+++++++|+++|++||.|..+.|..+ ..+.++||||+|.+.++|++||+.+ +..|+|+.|+|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 56799999999999999999999999999998665444 2337899999999999999999986 899999999999
Q ss_pred ecccc
Q 012554 363 PKKST 367 (461)
Q Consensus 363 ~a~~~ 367 (461)
+++++
T Consensus 93 ~a~~~ 97 (107)
T 2cph_A 93 WADSE 97 (107)
T ss_dssp ECCCC
T ss_pred eCCCC
Confidence 99886
No 38
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5.2e-15 Score=120.21 Aligned_cols=79 Identities=24% Similarity=0.350 Sum_probs=70.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEe-EEEEe--CcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAG-GIQVK--TQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~-~v~~~--~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
+.++|||+|||+++++++|+++|++||.|..+ .|..+ ..++++||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 57899999999999999999999999999886 55443 2237899999999999999999988 99999999999999
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
+++
T Consensus 84 ~~~ 86 (96)
T 1x5t_A 84 FKK 86 (96)
T ss_dssp CCC
T ss_pred ccc
Confidence 876
No 39
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5.8e-15 Score=121.40 Aligned_cols=80 Identities=24% Similarity=0.411 Sum_probs=71.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
.+.++|||+|||+++++++|+++|++||.|..+.|..+. .+.++||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 567999999999999999999999999999986554432 237899999999999999999887 99999999999999
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
+++
T Consensus 90 ~~~ 92 (102)
T 1x5s_A 90 GKS 92 (102)
T ss_dssp ECC
T ss_pred CCC
Confidence 876
No 40
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.58 E-value=7.7e-15 Score=151.71 Aligned_cols=80 Identities=23% Similarity=0.385 Sum_probs=72.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEe--CcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVK--TQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~--~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
.+.++|||+||++++|+++|+++|++||.|..|.|..+ +.+++|||||+|.+.++|.+||..| +..|+|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45789999999999999999999999999999777655 2337899999999999999999998 99999999999999
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
+++
T Consensus 180 ~~~ 182 (437)
T 3pgw_S 180 RGR 182 (437)
T ss_pred CCC
Confidence 886
No 41
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.58 E-value=9.5e-16 Score=123.90 Aligned_cols=78 Identities=22% Similarity=0.330 Sum_probs=67.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCC-CeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC--CCcccCceeEEeec
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKFG-TIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS--PIVISGHRVVVEPK 364 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~--~~~i~g~~i~V~~a 364 (461)
+++|||+|||+++|+++|+++|++|| .|..+.|..+. .+++|||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 78885553332 237899999999999999999987 55799999999999
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
+++
T Consensus 81 ~~~ 83 (91)
T 2lxi_A 81 DPK 83 (91)
T ss_dssp CSC
T ss_pred CCC
Confidence 876
No 42
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.58 E-value=1.3e-14 Score=119.76 Aligned_cols=74 Identities=20% Similarity=0.369 Sum_probs=67.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeeccc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKS 366 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~ 366 (461)
.+.++|||+|||+++|+++|+++|++||.|..+.| .++||||+|.+.++|++||+.+ +..|+|+.|+|+++++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKK------LKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEE------CSSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE------ECCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 45789999999999999999999999999998654 3569999999999999999987 9999999999999988
Q ss_pred c
Q 012554 367 T 367 (461)
Q Consensus 367 ~ 367 (461)
+
T Consensus 83 ~ 83 (103)
T 2dgu_A 83 P 83 (103)
T ss_dssp C
T ss_pred C
Confidence 6
No 43
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=9.2e-15 Score=120.49 Aligned_cols=80 Identities=20% Similarity=0.257 Sum_probs=72.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
.+.++|||+|||+++++++|+++|++||.|..+.|..+. .++++||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 568999999999999999999999999999997776553 237899999999999999999988 99999999999999
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
+++
T Consensus 93 ~~~ 95 (103)
T 2cq0_A 93 KPS 95 (103)
T ss_dssp SCC
T ss_pred CCC
Confidence 876
No 44
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.58 E-value=1.7e-14 Score=121.87 Aligned_cols=78 Identities=29% Similarity=0.524 Sum_probs=69.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
.+.++|||+|||+++++++|+++|++||.|..+.|..+. .+++|||||+|.+.+++++||+.+ +..|+|+.|+|+++
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 567899999999999999999999999999986654442 237899999999999999999998 99999999999987
Q ss_pred c
Q 012554 365 K 365 (461)
Q Consensus 365 ~ 365 (461)
+
T Consensus 118 k 118 (118)
T 2khc_A 118 K 118 (118)
T ss_dssp -
T ss_pred C
Confidence 5
No 45
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1e-14 Score=120.50 Aligned_cols=78 Identities=22% Similarity=0.348 Sum_probs=69.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC---cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEee
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT---QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEP 363 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~---~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~ 363 (461)
.+.++|||+|||+++++++|+++|++|| |..+.|..+. .+++|||||+|.+.++|++|| .+ +..|+|+.|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4568999999999999999999999999 9886654443 346899999999999999999 77 9999999999999
Q ss_pred cccc
Q 012554 364 KKST 367 (461)
Q Consensus 364 a~~~ 367 (461)
++++
T Consensus 91 a~~~ 94 (104)
T 1wi8_A 91 ADQA 94 (104)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 9876
No 46
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.6e-14 Score=119.22 Aligned_cols=80 Identities=20% Similarity=0.346 Sum_probs=71.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhc-CCCeeEeEEEEeC-cCCccEEEEEEccHHHHHHHHHhC-CCc-ccCceeEEee
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRK-FGTIRAGGIQVKT-QKGFCFGFVEFEEENAVQSAIEAS-PIV-ISGHRVVVEP 363 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~-~G~i~~~~v~~~~-~k~~g~aFVeF~~~~~a~~Al~~~-~~~-i~g~~i~V~~ 363 (461)
.+.++|||+|||+++|+++|+++|++ ||.|..+.|..+. .+++|||||+|.+.++|++||+.+ +.. |+|+.|+|++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 45789999999999999999999999 9999997776653 237899999999999999999988 888 9999999999
Q ss_pred cccc
Q 012554 364 KKST 367 (461)
Q Consensus 364 a~~~ 367 (461)
++++
T Consensus 87 a~~~ 90 (104)
T 2dhg_A 87 AIPK 90 (104)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 9876
No 47
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.8e-15 Score=123.84 Aligned_cols=80 Identities=23% Similarity=0.337 Sum_probs=72.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeeccc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKS 366 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~ 366 (461)
.+.++|||+|||.++++++|+++|++||.|..+.|..+..+++|||||+|.+.++|++|++.+ +..|+|+.|+|+++++
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 457899999999999999999999999999987665554457899999999999999999987 9999999999999876
Q ss_pred c
Q 012554 367 T 367 (461)
Q Consensus 367 ~ 367 (461)
+
T Consensus 107 ~ 107 (109)
T 2err_A 107 R 107 (109)
T ss_dssp S
T ss_pred C
Confidence 4
No 48
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.6e-15 Score=123.37 Aligned_cols=76 Identities=17% Similarity=0.220 Sum_probs=67.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC---CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS---PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~---~~~i~g~~i~V~~a 364 (461)
.+.++|||+|||+++|+++|+++|++||.|..+.| .. .+|||||+|++.++|.+||+.+ +..|+|+.|+|.++
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i--~~--~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLM--LK--GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEE--ET--TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE--Ec--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 45799999999999999999999999999998654 33 3789999999999999999965 47899999999999
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
+++
T Consensus 90 ~~~ 92 (105)
T 1sjq_A 90 NHK 92 (105)
T ss_dssp SSS
T ss_pred CCC
Confidence 886
No 49
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.57 E-value=8.7e-15 Score=115.49 Aligned_cols=78 Identities=18% Similarity=0.329 Sum_probs=69.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc--CCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeeccc
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ--KGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKS 366 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~--k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~ 366 (461)
+++|||+|||.++++++|+++|++||.|..+.|..+.. +++|||||+|.+.++|++|++.+ +..|+|+.|+|+++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999977655532 36899999999999999999987 9999999999999987
Q ss_pred c
Q 012554 367 T 367 (461)
Q Consensus 367 ~ 367 (461)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 50
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2e-14 Score=117.71 Aligned_cols=80 Identities=24% Similarity=0.335 Sum_probs=72.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC-cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT-QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKK 365 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~-~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~ 365 (461)
.+.++|||+|||.++|+++|+++|++||.|..+.|..+. .+.++||||+|.+.++|++||+.+ +..|+|+.|+|++++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 457899999999999999999999999999997776554 236899999999999999999887 999999999999998
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
++
T Consensus 95 ~~ 96 (100)
T 2do4_A 95 SG 96 (100)
T ss_dssp CC
T ss_pred CC
Confidence 76
No 51
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.56 E-value=1.2e-14 Score=115.80 Aligned_cols=77 Identities=18% Similarity=0.403 Sum_probs=69.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc--CCccEEEEEEccHHHHHHHHHhCCCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ--KGFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~--k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~a 364 (461)
.+.++|||+|||+++++++|+++|++||.|..+.|..+.. +++|||||+|.+.++|++||+.++..|+|+.|+|+++
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 5679999999999999999999999999999977765533 3789999999999999999987788999999999875
No 52
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=8.8e-15 Score=120.60 Aligned_cols=80 Identities=19% Similarity=0.234 Sum_probs=71.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
.+.++|||+|||+++++++|+++|++||.|..+.|..+. .++++||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 457999999999999999999999999999986554432 237899999999999999999987 99999999999999
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
+.+
T Consensus 91 ~~~ 93 (103)
T 2dnm_A 91 RYG 93 (103)
T ss_dssp SSC
T ss_pred CcC
Confidence 876
No 53
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.56 E-value=8.3e-15 Score=116.69 Aligned_cols=79 Identities=20% Similarity=0.320 Sum_probs=69.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecc
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKK 365 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~ 365 (461)
+.++|||+|||.++++++|+++|++||.|..+.|..+. .+++|||||+|.+.++|++||+.+ +..|+|+.|+|++++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 46899999999999999999999999999997766542 237899999999999999999987 999999999999987
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 64
No 54
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.56 E-value=3.8e-15 Score=121.37 Aligned_cols=79 Identities=15% Similarity=0.297 Sum_probs=66.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc----CCccEEEEEEccHHHHHHHHHhC-CC----cccCce
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ----KGFCFGFVEFEEENAVQSAIEAS-PI----VISGHR 358 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~----k~~g~aFVeF~~~~~a~~Al~~~-~~----~i~g~~ 358 (461)
..-.+|||+|||+++|+++|+++|++||.|....|.+..+ +++|||||+|.+.++|++||+.+ +. .|+||.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 4578999999999999999999999999654322444333 37899999999999999999987 54 599999
Q ss_pred eEEeeccc
Q 012554 359 VVVEPKKS 366 (461)
Q Consensus 359 i~V~~a~~ 366 (461)
|+|++++.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999875
No 55
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=7.2e-15 Score=120.82 Aligned_cols=80 Identities=26% Similarity=0.378 Sum_probs=71.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
.+.++|||+|||+++++++|+++|++||.|..+.|..+. .+.++||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 468999999999999999999999999999986554432 237899999999999999999887 99999999999999
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
+++
T Consensus 90 ~~~ 92 (102)
T 2cqb_A 90 KPM 92 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 886
No 56
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.56 E-value=1.2e-14 Score=120.44 Aligned_cols=80 Identities=16% Similarity=0.216 Sum_probs=70.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcc---cCceeEE
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVI---SGHRVVV 361 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i---~g~~i~V 361 (461)
.+.++|||+|||.++++++|+++|++||.|..+.|..+. .+++|||||+|.+.++|++||+.+ +..+ +|+.|+|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 557899999999999999999999999999986554432 237899999999999999999987 7776 8899999
Q ss_pred eecccc
Q 012554 362 EPKKST 367 (461)
Q Consensus 362 ~~a~~~ 367 (461)
.+++++
T Consensus 91 ~~a~~~ 96 (106)
T 2dgp_A 91 KPADSE 96 (106)
T ss_dssp EECCCC
T ss_pred EECCcc
Confidence 999876
No 57
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3.4e-14 Score=116.26 Aligned_cols=74 Identities=22% Similarity=0.340 Sum_probs=67.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcC--CCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKF--GTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~--G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
.+.++|||+|||+++|+++|+++|++| |.|..+.+ .++||||+|.+.++|++||..+ +..|+|+.|+|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK------IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE------CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE------eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 457899999999999999999999999 88887543 4679999999999999999987 99999999999999
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
+++
T Consensus 87 ~~~ 89 (99)
T 2cpd_A 87 KPV 89 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 876
No 58
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.56 E-value=2.5e-14 Score=117.88 Aligned_cols=78 Identities=18% Similarity=0.310 Sum_probs=69.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc--CCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ--KGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~--k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
.+.++|||+|||+++++++|+++|++|| |..+.|..+.. +++|||||+|.+.++|++|| .+ +..|+|+.|+|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 4578999999999999999999999997 98877766543 37899999999999999999 66 99999999999999
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
+++
T Consensus 91 ~~~ 93 (103)
T 2dng_A 91 EGR 93 (103)
T ss_dssp CCC
T ss_pred cCC
Confidence 876
No 59
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.4e-14 Score=121.43 Aligned_cols=80 Identities=21% Similarity=0.284 Sum_probs=70.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCee--------EeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccC
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIR--------AGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISG 356 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~--------~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g 356 (461)
.+.++|||+|||+++|+++|+++|++||.|. .+.|..+. .+++|||||+|.+.++|++||+.+ +..|+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 5689999999999999999999999999998 45454432 237899999999999999999987 999999
Q ss_pred ceeEEeecccc
Q 012554 357 HRVVVEPKKST 367 (461)
Q Consensus 357 ~~i~V~~a~~~ 367 (461)
+.|+|++++++
T Consensus 93 ~~l~V~~a~~~ 103 (113)
T 2cpe_A 93 SKLKVSLARKK 103 (113)
T ss_dssp EECEEECSSCC
T ss_pred CEEEEEECCCC
Confidence 99999999876
No 60
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.6e-14 Score=119.11 Aligned_cols=76 Identities=17% Similarity=0.198 Sum_probs=67.1
Q ss_pred CCCCEEEEcCCCC-CCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC---CCcccCceeEEee
Q 012554 288 AEGPSIYLKGLPP-SATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS---PIVISGHRVVVEP 363 (461)
Q Consensus 288 ~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~---~~~i~g~~i~V~~ 363 (461)
.+.++|||+|||+ ++|+++|+++|++||.|..+.| .. .++||||+|++.++|.+||+.+ +..|+|+.|+|.+
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i--~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLI--LN--KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEE--CS--SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEE--Ec--CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 5689999999999 9999999999999999998644 33 4589999999999999999976 4569999999999
Q ss_pred cccc
Q 012554 364 KKST 367 (461)
Q Consensus 364 a~~~ 367 (461)
++.+
T Consensus 89 a~~~ 92 (102)
T 1x4d_A 89 SQKY 92 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 9865
No 61
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1e-14 Score=118.79 Aligned_cols=79 Identities=13% Similarity=0.233 Sum_probs=70.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHH----HHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEe
Q 012554 288 AEGPSIYLKGLPPSATHALLE----NEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVE 362 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~----~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~ 362 (461)
.+.++|||+|||+++++++|+ ++|++||.|..+.|..+... ++||||+|.+.++|++||+.+ +..|+|+.|+|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~-rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY-QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST-TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC-CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 457899999999999999999 99999999998655444333 889999999999999999988 999999999999
Q ss_pred ecccc
Q 012554 363 PKKST 367 (461)
Q Consensus 363 ~a~~~ 367 (461)
+++++
T Consensus 86 ~a~~~ 90 (96)
T 2dgx_A 86 LATGA 90 (96)
T ss_dssp ECCCS
T ss_pred EcCCC
Confidence 99875
No 62
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=2.2e-14 Score=119.70 Aligned_cols=80 Identities=16% Similarity=0.378 Sum_probs=70.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc--CCccEEEEEEccHHHHHHHHHhC-------CCcccCce
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ--KGFCFGFVEFEEENAVQSAIEAS-------PIVISGHR 358 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~--k~~g~aFVeF~~~~~a~~Al~~~-------~~~i~g~~ 358 (461)
.+.++|||+|||+++++++|+++|.+||.|..|.|..+.. +++|||||+|.+.++|++||+.+ +..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 4578999999999999999999999999999866544432 37899999999999999999976 68899999
Q ss_pred eEEeecccc
Q 012554 359 VVVEPKKST 367 (461)
Q Consensus 359 i~V~~a~~~ 367 (461)
|+|++++++
T Consensus 93 l~v~~a~~~ 101 (111)
T 1x4h_A 93 LKVDLAVTR 101 (111)
T ss_dssp EEEECCCCC
T ss_pred EEEEECCCC
Confidence 999999886
No 63
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=2.2e-14 Score=115.78 Aligned_cols=74 Identities=20% Similarity=0.339 Sum_probs=67.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeeccc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKS 366 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~ 366 (461)
.+.++|||+|||+++++++|+++|++||.|..+.| .++||||+|.+.++|++||+.+ +..|+|+.|+|+++++
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDI------VKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEE------CSSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE------ECCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 55789999999999999999999999999998654 2459999999999999999987 9999999999999987
Q ss_pred c
Q 012554 367 T 367 (461)
Q Consensus 367 ~ 367 (461)
+
T Consensus 82 ~ 82 (92)
T 2dgt_A 82 R 82 (92)
T ss_dssp C
T ss_pred C
Confidence 6
No 64
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.4e-14 Score=118.86 Aligned_cols=77 Identities=23% Similarity=0.341 Sum_probs=68.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEe-CcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVK-TQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKK 365 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~-~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~ 365 (461)
.+.++|||+|||+++|+++|+++|++||.|. |..+ ..+.++||||+|.+.++|++||+.+ +..|+|+.|+|++++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~---~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFIK---VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEEE---CCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEEE---EEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 5689999999999999999999999999884 3222 3347899999999999999999988 999999999999998
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
++
T Consensus 90 ~~ 91 (101)
T 2fc9_A 90 PR 91 (101)
T ss_dssp SC
T ss_pred CC
Confidence 76
No 65
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.7e-14 Score=119.36 Aligned_cols=80 Identities=24% Similarity=0.422 Sum_probs=72.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc--CCccEEEEEEccHHHHHHHHHhCCCcccCceeEEeecc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ--KGFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEPKK 365 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~--k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~a~ 365 (461)
.+.++|||+|||+++++++|+++|++||.|..|.|..+.. +++|||||+|.+.++|++||+..+..|+|+.|+|++++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a~ 93 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCT 93 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEcc
Confidence 5689999999999999999999999999999977766532 37899999999999999999988889999999999998
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
++
T Consensus 94 ~~ 95 (105)
T 2dh8_A 94 PR 95 (105)
T ss_dssp CS
T ss_pred CC
Confidence 76
No 66
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.3e-14 Score=122.21 Aligned_cols=80 Identities=23% Similarity=0.370 Sum_probs=71.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhCCCcccCceeEEeecc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEPKK 365 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~a~ 365 (461)
.+.++|||+|||+++|+++|+++|.+||.|..+.|..+. .+++|||||+|.+.++|++||+..+..|+|+.|+|++++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECC
Confidence 446899999999999999999999999999987665543 237899999999999999999888889999999999998
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
++
T Consensus 105 ~~ 106 (116)
T 1x4b_A 105 AR 106 (116)
T ss_dssp SC
T ss_pred CC
Confidence 76
No 67
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.55 E-value=1.2e-14 Score=115.24 Aligned_cols=78 Identities=27% Similarity=0.388 Sum_probs=69.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc--CCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ--KGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~--k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
.+.++|||+|||.++++++|+++|++||.|..+.|..+.. +.++||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4578999999999999999999999999999876655422 27899999999999999999887 99999999999987
Q ss_pred c
Q 012554 365 K 365 (461)
Q Consensus 365 ~ 365 (461)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 68
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=4.3e-14 Score=116.41 Aligned_cols=79 Identities=22% Similarity=0.306 Sum_probs=70.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhCCCcccCceeEEeecc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEPKK 365 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~a~ 365 (461)
.+.++|||+|||+++++++|+++|++||.|..+.|..+. .+++|||||+|.+.++|++||.. ++.|+|+.|+|++++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~v~~a~ 91 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDCKLPN 91 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEEECCC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEEEEecC
Confidence 457899999999999999999999999999997776653 33789999999999999999985 778999999999998
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
++
T Consensus 92 ~~ 93 (103)
T 2cqg_A 92 SK 93 (103)
T ss_dssp TT
T ss_pred CC
Confidence 86
No 69
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.6e-14 Score=116.96 Aligned_cols=79 Identities=27% Similarity=0.336 Sum_probs=70.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc--CCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ--KGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~--k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
.+.++|||+|||+++++++|+++|++||.|..+.|..+.. +.++||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 5578999999999999999999999999999977665533 36899999999999999999987 99999999999998
Q ss_pred cc
Q 012554 365 KS 366 (461)
Q Consensus 365 ~~ 366 (461)
+.
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 74
No 70
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.55 E-value=1.6e-14 Score=118.28 Aligned_cols=76 Identities=24% Similarity=0.295 Sum_probs=67.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CC--cccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PI--VISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~--~i~g~~i~V~~a 364 (461)
.+++.|||+|||+++|+++|+++|++||.|..+.| . +.+|||||+|++.++|.+|++.+ +. .|+|+.|+|+++
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i--~--~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVV--M--PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE--E--TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEE--E--cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 56889999999999999999999999999998544 2 35789999999999999999987 43 588999999998
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
+.+
T Consensus 95 ~~k 97 (100)
T 3r27_A 95 TSQ 97 (100)
T ss_dssp SCS
T ss_pred ccc
Confidence 864
No 71
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=5.9e-14 Score=117.71 Aligned_cols=80 Identities=16% Similarity=0.187 Sum_probs=71.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcC-CccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQK-GFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKK 365 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k-~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~ 365 (461)
.+.++|||+|||+++++++|+++|.+||.|..+.|..+... +++||||+|.+.++|++||+.+ +..|+|+.|+|++++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 45789999999999999999999999999999777655332 6899999999999999999987 999999999999987
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
..
T Consensus 93 ~~ 94 (114)
T 2do0_A 93 RA 94 (114)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 72
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=4.3e-14 Score=116.47 Aligned_cols=76 Identities=14% Similarity=0.156 Sum_probs=67.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC---CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS---PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~---~~~i~g~~i~V~~a 364 (461)
.+.++|||+|||+++++++|+++|++||.|..+.| .. .+|||||+|++.++|.+||+.+ +..|+|+.|+|.++
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i--~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILM--LK--GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEE--ET--TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE--EC--CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 56789999999999999999999999999998533 33 3789999999999999999865 67899999999999
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
+.+
T Consensus 89 ~~~ 91 (101)
T 2cq1_A 89 NHK 91 (101)
T ss_dssp SCS
T ss_pred Ccc
Confidence 876
No 73
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.55 E-value=8.4e-15 Score=119.30 Aligned_cols=74 Identities=24% Similarity=0.446 Sum_probs=67.6
Q ss_pred CCCCEEEEcCCCC-CCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecc
Q 012554 288 AEGPSIYLKGLPP-SATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKK 365 (461)
Q Consensus 288 ~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~ 365 (461)
.+.++|||+|||+ ++++++|+++|++||.|..+.| .++||||+|.+.++|++||+.+ +..|+|+.|+|++++
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI------KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE------ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 5688999999998 9999999999999999998655 3689999999999999999987 999999999999998
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
++
T Consensus 82 ~~ 83 (96)
T 2kvi_A 82 SN 83 (96)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 74
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.9e-14 Score=118.76 Aligned_cols=79 Identities=18% Similarity=0.198 Sum_probs=67.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc-CCccEEEEEEccHHHHHHHHHhCCCcccCceeEEeeccc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ-KGFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEPKKS 366 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~-k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~a~~ 366 (461)
...++|||+|||+++|+++|+++|++||.+ .+.|..+.. +++|||||+|.+.++|++||+..+..|+++.|+|..+.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~~ 91 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNST 91 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCC
Confidence 557899999999999999999999999954 666655542 378999999999999999996559999999999998765
Q ss_pred c
Q 012554 367 T 367 (461)
Q Consensus 367 ~ 367 (461)
.
T Consensus 92 ~ 92 (102)
T 1wez_A 92 A 92 (102)
T ss_dssp C
T ss_pred C
Confidence 3
No 75
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.54 E-value=1.5e-14 Score=128.89 Aligned_cols=80 Identities=19% Similarity=0.233 Sum_probs=70.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCC--CeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEe
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFG--TIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVE 362 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G--~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~ 362 (461)
...++|||+||++++|+++|+++|++|| .|..+.|..+. .+++|||||+|.+.++|++||+.+ +..|+|+.|+|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 89887766553 337899999999999999999998 999999999999
Q ss_pred ecccc
Q 012554 363 PKKST 367 (461)
Q Consensus 363 ~a~~~ 367 (461)
++.++
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 98765
No 76
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2.2e-14 Score=115.95 Aligned_cols=78 Identities=21% Similarity=0.267 Sum_probs=69.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc--CCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ--KGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~--k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
.+.++|||+|||.++++++|+++|++||.|..+.|..+.. ++++||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 4578999999999999999999999999999865544322 36899999999999999999988 99999999999987
Q ss_pred c
Q 012554 365 K 365 (461)
Q Consensus 365 ~ 365 (461)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 5
No 77
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.3e-14 Score=121.47 Aligned_cols=80 Identities=18% Similarity=0.262 Sum_probs=71.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHH---HHHhcCCCeeEeEEEEeCc-----CCccEEEEEEccHHHHHHHHHhC-CCcccCce
Q 012554 288 AEGPSIYLKGLPPSATHALLE---NEFRKFGTIRAGGIQVKTQ-----KGFCFGFVEFEEENAVQSAIEAS-PIVISGHR 358 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~---~~F~~~G~i~~~~v~~~~~-----k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~ 358 (461)
.+.++|||+|||+++++++|+ ++|++||.|..+.|..+.. +.+|||||+|.+.++|++||+.+ +..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 567899999999999999999 9999999999976654432 25699999999999999999997 99999999
Q ss_pred eEEeecccc
Q 012554 359 VVVEPKKST 367 (461)
Q Consensus 359 i~V~~a~~~ 367 (461)
|+|++++++
T Consensus 93 l~V~~a~~k 101 (111)
T 2cpi_A 93 LKASLGTTK 101 (111)
T ss_dssp EEEESCCCC
T ss_pred EEEEecccc
Confidence 999999886
No 78
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.54 E-value=5.4e-15 Score=118.97 Aligned_cols=77 Identities=17% Similarity=0.196 Sum_probs=65.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCC--CeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecc
Q 012554 291 PSIYLKGLPPSATHALLENEFRKFG--TIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKK 365 (461)
Q Consensus 291 ~~lfV~nLp~~~te~~L~~~F~~~G--~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~ 365 (461)
.+|||+|||+++|+++|+++|++|| .|..+.|..+. .+++|||||+|.+.++|++||+.+ +..|+|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 89887766653 347899999999999999999988 999999999999988
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
+.
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 75
No 79
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.54 E-value=1.7e-14 Score=117.38 Aligned_cols=79 Identities=13% Similarity=0.213 Sum_probs=70.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecc
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKK 365 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~ 365 (461)
+.++|||+|||.++++++|+++|++||.|..+.|..+. .+++|||||+|.+.++|++||+.+ +..|+|+.|+|++++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 36899999999999999999999999999986554442 236899999999999999999887 999999999999998
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
++
T Consensus 81 ~~ 82 (96)
T 2x1f_A 81 NS 82 (96)
T ss_dssp CS
T ss_pred CC
Confidence 75
No 80
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.54 E-value=6.6e-15 Score=120.89 Aligned_cols=76 Identities=20% Similarity=0.192 Sum_probs=68.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeeccc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKS 366 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~ 366 (461)
...++|||+|||.++++++|+++|++||.|..+.|. +.++||||+|.+.++|.+||..+ +..|+|+.|+|+++++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 347899999999999999999999999999986543 46899999999999999999987 9999999999999886
Q ss_pred c
Q 012554 367 T 367 (461)
Q Consensus 367 ~ 367 (461)
+
T Consensus 101 ~ 101 (101)
T 2la4_A 101 R 101 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 81
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=4.4e-14 Score=115.53 Aligned_cols=76 Identities=21% Similarity=0.352 Sum_probs=68.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeeccc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKS 366 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~ 366 (461)
.+.++|||+|||+++|+++|+++|++||.|..+.| . +.++||||+|.+.++|++||+.+ +..|+|+.|+|+++++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~--~--~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFI--H--KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEE--E--TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEE--e--cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 56789999999999999999999999999988544 3 34789999999999999999887 9999999999999987
Q ss_pred c
Q 012554 367 T 367 (461)
Q Consensus 367 ~ 367 (461)
+
T Consensus 89 ~ 89 (99)
T 2cpj_A 89 S 89 (99)
T ss_dssp C
T ss_pred C
Confidence 6
No 82
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.54 E-value=3.6e-14 Score=118.30 Aligned_cols=80 Identities=20% Similarity=0.375 Sum_probs=71.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc--CCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ--KGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~--k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
.+.++|||+|||.++++++|+++|++||.|..+.|..+.. +++|||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 4578999999999999999999999999999977765533 37899999999999999999987 99999999999998
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
+++
T Consensus 104 ~~k 106 (108)
T 2jrs_A 104 TER 106 (108)
T ss_dssp CSS
T ss_pred ccC
Confidence 864
No 83
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.5e-14 Score=116.83 Aligned_cols=75 Identities=20% Similarity=0.271 Sum_probs=66.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCC-eeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-C-CcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGT-IRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-P-IVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~-i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~-~~i~g~~i~V~~a 364 (461)
...++|||+|||+++|+++|+++|++||. |..+.+ .+++||||+|.+.++|++||+.+ + ..|+|+.|+|+++
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-----LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-----EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-----cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 45789999999999999999999999999 665433 25789999999999999999988 7 8999999999999
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
+++
T Consensus 81 ~~~ 83 (93)
T 2cqh_A 81 VSK 83 (93)
T ss_dssp CCC
T ss_pred cCc
Confidence 876
No 84
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.54 E-value=1.3e-14 Score=121.57 Aligned_cols=78 Identities=23% Similarity=0.250 Sum_probs=68.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCC-CeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFG-TIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKK 365 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~ 365 (461)
...++|||+|||+++++++|+++|++|| .|..+.| ...+++|||||+|.+.++|++||+.+ +..|+|+.|+|++++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i--~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSV--NTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEEC--SSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEE--EcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 3468999999999999999999999999 8987443 33457899999999999999999998 999999999999987
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
..
T Consensus 104 ~~ 105 (111)
T 2jvr_A 104 NP 105 (111)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 85
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1e-13 Score=114.84 Aligned_cols=76 Identities=25% Similarity=0.332 Sum_probs=67.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC---CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS---PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~---~~~i~g~~i~V~~a 364 (461)
.+.++|||+|||+++++++|+++|++||.|..+.| .. .++||||+|++.++|.+||+.+ +..|+|+.|+|+++
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i--~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMM--MP--FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEE--ET--TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEE--EC--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 45789999999999999999999999999998543 33 4789999999999999999876 45699999999999
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
+.+
T Consensus 89 ~~~ 91 (104)
T 1wex_A 89 TSK 91 (104)
T ss_dssp SSS
T ss_pred cCc
Confidence 876
No 86
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.54 E-value=1.9e-14 Score=120.24 Aligned_cols=80 Identities=19% Similarity=0.333 Sum_probs=69.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhCCCcccCceeEEeecc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEPKK 365 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~a~ 365 (461)
.+.++|||+|||+++|+++|+++|++||.|..+.|..+. .+++|||||+|.+.++|++||+.++..|+|+.|+|+++.
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~ 102 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAF 102 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEcc
Confidence 457899999999999999999999999999987665443 237899999999999999999998999999999999998
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
++
T Consensus 103 ~~ 104 (109)
T 2rs2_A 103 PR 104 (109)
T ss_dssp CC
T ss_pred CC
Confidence 76
No 87
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3.1e-14 Score=120.61 Aligned_cols=76 Identities=17% Similarity=0.220 Sum_probs=68.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC---CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS---PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~---~~~i~g~~i~V~~a 364 (461)
.+.++|||+|||+++|+++|+++|++||.|..+.| .. .+|||||+|++.++|.+||+.+ +..|+|+.|+|.++
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i--~~--~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLM--LK--GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEE--EG--GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE--eC--CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 56789999999999999999999999999998654 33 3789999999999999999976 47899999999999
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
+.+
T Consensus 105 ~~k 107 (119)
T 2ad9_A 105 NHK 107 (119)
T ss_dssp SSS
T ss_pred cCC
Confidence 886
No 88
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.53 E-value=1.4e-14 Score=115.07 Aligned_cols=73 Identities=12% Similarity=0.127 Sum_probs=67.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecc
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKK 365 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~ 365 (461)
.+..|||+||++.+|+++|+++|.+||+|..+.+.. ++|||||+|.+.++|++|++.+ +..|+|+.|+|+.+.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 367999999999999999999999999999976532 6899999999999999999999 999999999999884
No 89
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.53 E-value=2.1e-14 Score=116.31 Aligned_cols=79 Identities=22% Similarity=0.291 Sum_probs=70.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcC-CccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQK-GFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKK 365 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k-~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~ 365 (461)
.+.++|||+|||+++++++|+++|++||.|..+.|..+... +++||||+|.+.++|++||+.+ +..|+|+.|+|++++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 45789999999999999999999999999999776655432 6899999999999999999977 999999999999886
Q ss_pred c
Q 012554 366 S 366 (461)
Q Consensus 366 ~ 366 (461)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 90
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=4e-14 Score=115.68 Aligned_cols=80 Identities=14% Similarity=0.222 Sum_probs=71.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCee-EeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCce----e
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIR-AGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHR----V 359 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~-~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~----i 359 (461)
.+.++|||+|||+++++++|+++|++||.|. .+.|..+. .+++|||||+|.+.++|++||+.+ +..|+|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4579999999999999999999999999999 87666553 237899999999999999999988 99999999 9
Q ss_pred EEeecccc
Q 012554 360 VVEPKKST 367 (461)
Q Consensus 360 ~V~~a~~~ 367 (461)
+|.++++.
T Consensus 87 ~v~~a~~~ 94 (99)
T 2div_A 87 KLNYATYS 94 (99)
T ss_dssp CEEETTCC
T ss_pred EEeecCCC
Confidence 99998864
No 91
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=3.6e-14 Score=114.00 Aligned_cols=74 Identities=20% Similarity=0.289 Sum_probs=67.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeeccc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKS 366 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~ 366 (461)
.+.++|||+|||+++|+++|+++|++||.|..+.| .++||||+|.+.++|++||+.+ +..|+|+.|+|+++++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDV------VKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEE------CSSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEE------ECCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 45789999999999999999999999999998554 2459999999999999999987 9999999999999987
Q ss_pred c
Q 012554 367 T 367 (461)
Q Consensus 367 ~ 367 (461)
+
T Consensus 81 ~ 81 (90)
T 2dnp_A 81 G 81 (90)
T ss_dssp C
T ss_pred C
Confidence 5
No 92
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.6e-14 Score=119.55 Aligned_cols=79 Identities=16% Similarity=0.183 Sum_probs=69.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc-CCccEEEEEEccHHHHHHHHHhCCCcccCceeEEeeccc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ-KGFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEPKKS 366 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~-k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~a~~ 366 (461)
.+.++|||+|||+++|+++|+++|++||.|..|.|..+.. +++|||||+|.+.++|++||...++.|+|+.|.|.++..
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 88 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEchH
Confidence 4568999999999999999999999999999976655433 378999999999999999999449999999999998765
No 93
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.4e-14 Score=118.54 Aligned_cols=80 Identities=20% Similarity=0.299 Sum_probs=71.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc--CCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ--KGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~--k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
.+.++|||+|||.++++++|+++|++||.|..+.|..+.. +++|||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 4578999999999999999999999999999977655533 36899999999999999999987 99999999999999
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
+++
T Consensus 101 ~~~ 103 (106)
T 1p27_B 101 FVR 103 (106)
T ss_dssp EES
T ss_pred cCC
Confidence 875
No 94
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.53 E-value=2.6e-14 Score=113.95 Aligned_cols=79 Identities=16% Similarity=0.297 Sum_probs=70.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc--C-CccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ--K-GFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~--k-~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
..++|||+|||.++|+++|+++|++||.|..+.|..+.. . .+|||||+|.+.++|++|++.+ +..|+|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999876655542 2 6899999999999999999987 99999999999998
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
++.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 95
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.2e-14 Score=120.69 Aligned_cols=80 Identities=14% Similarity=0.137 Sum_probs=70.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCe-eEeEEEEeC-cCCccEEEEEEccHHHHHHHHHhCCCcccCceeEEeecc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTI-RAGGIQVKT-QKGFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEPKK 365 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i-~~~~v~~~~-~k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~a~ 365 (461)
.+.++|||+|||+++|+++|+++|++||.| ..+.|..+. .+++|||||+|.+.++|++||+..+..|+|+.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a~ 92 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVT 92 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEEC
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEECC
Confidence 457899999999999999999999999999 665554443 237899999999999999999888899999999999998
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
++
T Consensus 93 ~~ 94 (114)
T 2cpy_A 93 LE 94 (114)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 96
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.53 E-value=1.1e-14 Score=122.88 Aligned_cols=74 Identities=20% Similarity=0.342 Sum_probs=62.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCce-----eEEe
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHR-----VVVE 362 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~-----i~V~ 362 (461)
..++|||+|||+++++++|+++|++||.|..+.| ..+ +||||+|.+.++|++||+.+ +..|+|+. |+|.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i--~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADV--YRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEE--CTT---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE--ecC---CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 4689999999999999999999999999998554 322 89999999999999999988 99999998 6666
Q ss_pred ecccc
Q 012554 363 PKKST 367 (461)
Q Consensus 363 ~a~~~ 367 (461)
...++
T Consensus 90 ~~~~~ 94 (115)
T 3beg_B 90 VDGPR 94 (115)
T ss_dssp ECC--
T ss_pred cCCCC
Confidence 65553
No 97
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=2.4e-14 Score=117.55 Aligned_cols=74 Identities=31% Similarity=0.433 Sum_probs=67.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecccc
Q 012554 291 PSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKST 367 (461)
Q Consensus 291 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~~ 367 (461)
++|||+|||+++|+++|+++|++||.|..+.| ..+ +++||||+|.+.++|++||+.+ +..|+|+.|+|++++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i--~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWI--ARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEE--ESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE--eeC-CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999998554 333 6899999999999999999988 89999999999999876
No 98
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.53 E-value=3.5e-14 Score=113.54 Aligned_cols=78 Identities=24% Similarity=0.438 Sum_probs=69.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecc
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKK 365 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~ 365 (461)
+.++|||+|||+++++++|+++|++||.|..+.|..+. .+++|||||+|.+.++|++|| .+ +..|+|+.|+|++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 35799999999999999999999999999997776553 337899999999999999999 66 999999999999998
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
++
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 75
No 99
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=2.8e-14 Score=116.37 Aligned_cols=80 Identities=13% Similarity=0.088 Sum_probs=70.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc--CCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ--KGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~--k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
...++|||+|||+++++++|+++|.+||.|..+.+..+.. +.++||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 4468999999999999999999999999998665555433 36899999999999999999998 89999999999998
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
+.+
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 753
No 100
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.52 E-value=4.7e-14 Score=120.21 Aligned_cols=79 Identities=27% Similarity=0.421 Sum_probs=70.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
.+.++|||+|||+++|+++|+++|++||.|..+.|..+. .+++|||||+|.+.++|++|| .+ +..|+|+.|+|+++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 346899999999999999999999999999997776653 337899999999999999999 66 99999999999999
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
++.
T Consensus 113 ~~~ 115 (124)
T 2jwn_A 113 RTN 115 (124)
T ss_dssp SCC
T ss_pred CCC
Confidence 875
No 101
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.52 E-value=5.6e-14 Score=114.94 Aligned_cols=78 Identities=19% Similarity=0.280 Sum_probs=69.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeE--------eEEEEeCc--CCccEEEEEEccHHHHHHHHHhC-CCcccC
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRA--------GGIQVKTQ--KGFCFGFVEFEEENAVQSAIEAS-PIVISG 356 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~--------~~v~~~~~--k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g 356 (461)
...++|||+|||+++++++|+++|++||.|.. +.|..+.. +++|||||+|.+.++|++||+.+ +..|+|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 34789999999999999999999999999998 76766533 37899999999999999999987 999999
Q ss_pred ceeEEeecc
Q 012554 357 HRVVVEPKK 365 (461)
Q Consensus 357 ~~i~V~~a~ 365 (461)
+.|+|++++
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999874
No 102
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=3.6e-14 Score=116.61 Aligned_cols=77 Identities=29% Similarity=0.419 Sum_probs=66.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEe--CcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVK--TQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~--~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
.+.++|||+|||+++|+++|+++|+.|+.|. +..+ ..++++||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~---~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSVRAR---IVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCSEEE---EEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCeEEE---EEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 4578999999999999999999999886544 3333 2237899999999999999999987 99999999999999
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
+++
T Consensus 90 ~~~ 92 (102)
T 2fc8_A 90 KPK 92 (102)
T ss_dssp CCC
T ss_pred cCC
Confidence 876
No 103
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.52 E-value=5e-14 Score=117.57 Aligned_cols=74 Identities=15% Similarity=0.350 Sum_probs=67.6
Q ss_pred CCCCEEEEcCCCCC-CCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecc
Q 012554 288 AEGPSIYLKGLPPS-ATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKK 365 (461)
Q Consensus 288 ~~~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~ 365 (461)
...++|||+|||++ +++++|+++|++||.|..+.| .++||||+|.+.++|++||+.+ +..|+|+.|+|++++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 34689999999999 999999999999999998655 5789999999999999999887 999999999999998
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
..
T Consensus 99 ~~ 100 (110)
T 1wf1_A 99 EP 100 (110)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 104
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=4.2e-14 Score=118.80 Aligned_cols=80 Identities=21% Similarity=0.287 Sum_probs=70.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeE--EEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGG--IQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~--v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
.+.++|||+|||+++|+++|+++|++||.|..+. +.+...+++|||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 4578999999999999999999999999984332 33335568899999999999999999998 99999999999999
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
+++
T Consensus 103 ~~~ 105 (115)
T 2cpx_A 103 KNK 105 (115)
T ss_dssp CCC
T ss_pred cCC
Confidence 886
No 105
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=5e-14 Score=117.39 Aligned_cols=76 Identities=24% Similarity=0.360 Sum_probs=68.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeeccc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKS 366 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~ 366 (461)
...++|||+|||.++++++|+++|++||.|..+.| ..+ ++||||+|.+.++|++||+.+ +..|+|+.|+|+++++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i--~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRV--FPE--KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEE--ETT--TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE--eCC--CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 45789999999999999999999999999998544 332 789999999999999999887 9999999999999988
Q ss_pred c
Q 012554 367 T 367 (461)
Q Consensus 367 ~ 367 (461)
+
T Consensus 99 ~ 99 (109)
T 1x4g_A 99 S 99 (109)
T ss_dssp C
T ss_pred C
Confidence 6
No 106
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=1.2e-13 Score=112.56 Aligned_cols=76 Identities=28% Similarity=0.457 Sum_probs=68.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCccc--CceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVIS--GHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~--g~~i~V~~a 364 (461)
.+.++|||+|||.++|+++|+++|++||.|..+.| .. .++||||+|.+.++|++||+.+ +..|+ |+.|+|+++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~--~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDH--VK--GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEE--CS--SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE--eC--CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 45789999999999999999999999999998543 33 3789999999999999999987 89999 999999999
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
+++
T Consensus 91 ~~~ 93 (97)
T 1why_A 91 KSG 93 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 875
No 107
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.51 E-value=1.2e-14 Score=119.43 Aligned_cols=79 Identities=22% Similarity=0.235 Sum_probs=71.3
Q ss_pred CCCEEEEcCCCC------CCCHHHHHHHHhcCCCeeEeEEEEeCc--CCccEEEEEEccHHHHHHHHHhC-CCcccC-ce
Q 012554 289 EGPSIYLKGLPP------SATHALLENEFRKFGTIRAGGIQVKTQ--KGFCFGFVEFEEENAVQSAIEAS-PIVISG-HR 358 (461)
Q Consensus 289 ~~~~lfV~nLp~------~~te~~L~~~F~~~G~i~~~~v~~~~~--k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g-~~ 358 (461)
..++|||+|||+ ++++++|+++|++||.|..+.|..+.. +++|||||+|.+.++|++||+.+ +..|+| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 367999999999 999999999999999999977766653 37899999999999999999987 999999 99
Q ss_pred eEEeecccc
Q 012554 359 VVVEPKKST 367 (461)
Q Consensus 359 i~V~~a~~~ 367 (461)
|+|.++.++
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999998775
No 108
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=6.1e-14 Score=114.31 Aligned_cols=77 Identities=17% Similarity=0.268 Sum_probs=68.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeeccc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKS 366 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~ 366 (461)
...++|||+|||+++++++|+++|++||.|. +.+. .++.++||||+|.+.++|++||+.+ +..|+|+.|+|+++++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLT--WQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEE--EETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEE--cCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 3478999999999999999999999999996 4343 3467899999999999999999987 9999999999999987
Q ss_pred c
Q 012554 367 T 367 (461)
Q Consensus 367 ~ 367 (461)
+
T Consensus 94 ~ 94 (97)
T 2e5j_A 94 Q 94 (97)
T ss_dssp C
T ss_pred C
Confidence 5
No 109
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.50 E-value=5.9e-14 Score=116.34 Aligned_cols=78 Identities=15% Similarity=0.305 Sum_probs=70.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc-CCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ-KGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKK 365 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~-k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~ 365 (461)
.+.++|||+|||+++|+++|+++|++||.|..+.|..+.. ++++||||+|.+.++|++||+.+ +..|+|+.|+|+++.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 4578999999999999999999999999999977765542 36899999999999999999987 999999999999875
No 110
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.50 E-value=7.3e-14 Score=114.10 Aligned_cols=74 Identities=24% Similarity=0.429 Sum_probs=67.5
Q ss_pred CCCCEEEEcCCCC-CCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecc
Q 012554 288 AEGPSIYLKGLPP-SATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKK 365 (461)
Q Consensus 288 ~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~ 365 (461)
.+.++|||+|||+ ++++++|+++|++||.|..+.| .+|||||+|.+.++|++||+.+ +..|+|+.|+|++++
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 3578999999998 9999999999999999998655 4789999999999999999988 999999999999987
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
++
T Consensus 94 ~~ 95 (97)
T 2xnq_A 94 SN 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 111
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=2.5e-14 Score=119.85 Aligned_cols=76 Identities=18% Similarity=0.248 Sum_probs=67.6
Q ss_pred CCCCEEEEcCCCCC-CCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC---CCcccCceeEEee
Q 012554 288 AEGPSIYLKGLPPS-ATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS---PIVISGHRVVVEP 363 (461)
Q Consensus 288 ~~~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~---~~~i~g~~i~V~~ 363 (461)
.+.++|||+|||++ +++++|+++|++||.|..+.| . +.++||||+|++.++|.+||+.+ +..|+|+.|+|.+
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i--~--~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYIL--M--RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEE--E--TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEE--e--cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 45889999999998 999999999999999998654 2 36799999999999999999976 5679999999999
Q ss_pred cccc
Q 012554 364 KKST 367 (461)
Q Consensus 364 a~~~ 367 (461)
++.+
T Consensus 99 a~~~ 102 (112)
T 1x4f_A 99 SEKY 102 (112)
T ss_dssp ECSC
T ss_pred Cccc
Confidence 9875
No 112
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.50 E-value=4.8e-14 Score=121.48 Aligned_cols=80 Identities=24% Similarity=0.320 Sum_probs=71.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
.+.++|||+|||+++++++|+++|++||.|..+.|..+. .+.+|||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 457899999999999999999999999999997665443 237899999999999999999987 99999999999999
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
+++
T Consensus 124 ~~~ 126 (129)
T 2kxn_B 124 ITK 126 (129)
T ss_dssp SSS
T ss_pred cCC
Confidence 875
No 113
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=1.3e-13 Score=110.82 Aligned_cols=78 Identities=21% Similarity=0.222 Sum_probs=69.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC-cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT-QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKK 365 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~-~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~ 365 (461)
...++|||+|||+++++++|+++|++| .|..+.|..+. .+++|||||+|.+.++|++||. + +..|+|+.|+|.+++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 457999999999999999999999999 89887776652 2368999999999999999999 7 999999999999988
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
++
T Consensus 86 ~~ 87 (91)
T 2dgw_A 86 SG 87 (91)
T ss_dssp SC
T ss_pred cC
Confidence 75
No 114
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=5.9e-14 Score=115.63 Aligned_cols=79 Identities=22% Similarity=0.329 Sum_probs=71.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecc
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKK 365 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~ 365 (461)
+.++|||+|||+++++++|+++|++||.|..+.|..+. .+++|||||+|.+.++|++||+.+ +..|+|+.|+|++++
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 46899999999999999999999999999997776553 236899999999999999999988 999999999999998
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
++
T Consensus 87 ~~ 88 (104)
T 1p1t_A 87 SE 88 (104)
T ss_dssp CT
T ss_pred Cc
Confidence 76
No 115
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.50 E-value=3.8e-14 Score=118.16 Aligned_cols=80 Identities=19% Similarity=0.272 Sum_probs=70.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
.+.++|||+|||+++|+++|+++|++||.|..+.|..+. .+++|||||+|.+.++|++||..+ +..|+|+.|+|+++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 457899999999999999999999999999986554432 236899999999999999999987 99999999999999
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
+++
T Consensus 104 ~~~ 106 (110)
T 1oo0_B 104 FVK 106 (110)
T ss_dssp EES
T ss_pred ccC
Confidence 875
No 116
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.2e-13 Score=114.14 Aligned_cols=80 Identities=15% Similarity=0.208 Sum_probs=69.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeE-eEEEEe-CcCCccEEEEEEccHHHHHHHHHhCCCcccCceeEEeecc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRA-GGIQVK-TQKGFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEPKK 365 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~-~~v~~~-~~k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~a~ 365 (461)
...++|||+|||+++|+++|+++|++||.|.. +.|..+ ..+++|||||+|.+.++|++||+..+..|+|+.|+|..+.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~ 92 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 92 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECC
Confidence 45789999999999999999999999999976 444433 2337899999999999999999988999999999999876
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
.+
T Consensus 93 ~~ 94 (104)
T 1wg5_A 93 RA 94 (104)
T ss_dssp TT
T ss_pred HH
Confidence 64
No 117
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.8e-13 Score=110.81 Aligned_cols=76 Identities=25% Similarity=0.494 Sum_probs=66.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeeccc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKS 366 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~ 366 (461)
...++|||+|||+++|+++|+++|++||.|..| .++....+ ||||+|.+.++|++||+ + +..|+|+.|+|+++..
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 346899999999999999999999999999974 34333344 99999999999999999 7 9999999999998876
Q ss_pred c
Q 012554 367 T 367 (461)
Q Consensus 367 ~ 367 (461)
+
T Consensus 82 ~ 82 (94)
T 2e5g_A 82 K 82 (94)
T ss_dssp S
T ss_pred C
Confidence 5
No 118
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.49 E-value=3.4e-14 Score=111.86 Aligned_cols=73 Identities=16% Similarity=0.262 Sum_probs=63.5
Q ss_pred CCEEEEcCCCCCC------CHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCc-eeEE
Q 012554 290 GPSIYLKGLPPSA------THALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGH-RVVV 361 (461)
Q Consensus 290 ~~~lfV~nLp~~~------te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~-~i~V 361 (461)
+++|||+|||..+ ++++|+++|++||.|..+.|...+.+++|||||+|.+.++|++||+.+ +..|+|+ .|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 3789999999999 779999999999999986554223347899999999999999999998 9999999 8877
Q ss_pred e
Q 012554 362 E 362 (461)
Q Consensus 362 ~ 362 (461)
.
T Consensus 81 ~ 81 (81)
T 2krb_A 81 N 81 (81)
T ss_dssp C
T ss_pred C
Confidence 3
No 119
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=3.2e-13 Score=109.99 Aligned_cols=74 Identities=20% Similarity=0.337 Sum_probs=66.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeeccc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKS 366 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~ 366 (461)
.+.++|||+|| ++|+++|+++|++||.|..+.| .+.++||||+|.+.++|++||+.+ +..|+|+.|+|+++++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i----~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM----DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE----ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe----cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 45789999996 8999999999999999988654 357889999999999999999998 9999999999999987
Q ss_pred c
Q 012554 367 T 367 (461)
Q Consensus 367 ~ 367 (461)
+
T Consensus 87 ~ 87 (97)
T 1x5p_A 87 Q 87 (97)
T ss_dssp C
T ss_pred C
Confidence 6
No 120
>1q42_A MTR2, mRNA transport regulator MTR2; NTF2-fold, nuclear export, translation; 1.75A {Candida albicans} SCOP: d.17.4.2 PDB: 1q40_A
Probab=99.49 E-value=2.4e-14 Score=126.82 Aligned_cols=101 Identities=14% Similarity=0.077 Sum_probs=87.8
Q ss_pred CHHHHHHHHHHHHHHHHccCch-----hhh------ccc----cCCceeeccCCCCccccc------ccHHHHHHHHHhC
Q 012554 10 TADIVANAFVHQYYLILHQSPQ-----LVH------RFY----QDISKLGRPEENGAMSIT------TTMQAINDKILAL 68 (461)
Q Consensus 10 ~~~~vg~~Fv~~YY~~l~~~p~-----~l~------~fY----~~~s~l~~~~~~~~~~~~------~g~~~I~~~~~~l 68 (461)
...+.+..|++.||..|++.+. .|. ++| .++|.|+|+|. .+ .|.++|.+++..|
T Consensus 24 ~~~r~aE~F~K~yyasLD~~r~~~~~~ql~~v~~f~~ly~~~l~~~a~liwNGn-----p~~~~~~~~gr~~fqk~w~~l 98 (201)
T 1q42_A 24 DPTQQLEPFLKRFLASLDLLYTQPTSQPFPNVESYATQLGSNLKRSSAIIVNGQ-----PIIPSPQEDCKLQFQKKWLQT 98 (201)
T ss_dssp CGGGTHHHHHHHHHHHHSCCCCCCTTCSSCCHHHHHTTTTTTEEEEEEEEETTE-----ECCCCSSCCHHHHHHHHHHTS
T ss_pred CcchhHHHHHHHHHHHhcccccccchhhccchhHHHHHhccccCCccEEEEcCc-----ccccccccccHHHHHHHHHhC
Confidence 5678899999999999998886 777 788 78899999986 77 9999999999999
Q ss_pred CCCcceEEEEEeeeeeeCC-CcEEEEEEEEEEcCCCCcceeEEEEEEEEe
Q 012554 69 HYGEFSAEITTVDAQESYN-GGVIVLVTGYLTGKDSVRRKFSQSFFLAPQ 117 (461)
Q Consensus 69 ~~~~~~~~I~~~d~q~s~~-~~ilv~V~G~~~~~~~~~~~F~q~F~L~~~ 117 (461)
|.+ .|.|.++|||++++ +.+||+|.|.|++++...++|.|+|.|..+
T Consensus 99 P~S--qHqL~SlDahpIpGq~T~lI~asGkVrFDesgr~~fgQsf~Lta~ 146 (201)
T 1q42_A 99 PLS--SHQLTSYDGHLIPGTGTFVVHFSAKVRFDQSGRNRLGESADLFQE 146 (201)
T ss_dssp CCE--EEEEEEEEEEEETTTTEEEEEEEEEEEEBCSSCCTTSCCC-----
T ss_pred CCc--ceeeeeeecceeCCCcEEEEEEeEEEEECCCCcCcCCCcEEEecc
Confidence 977 99999999999975 469999999999999999999999999866
No 121
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.49 E-value=4.6e-14 Score=121.77 Aligned_cols=79 Identities=16% Similarity=0.282 Sum_probs=69.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeE--eEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CC----cccCce
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRA--GGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PI----VISGHR 358 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~--~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~----~i~g~~ 358 (461)
...++|||+|||+++|+++|+++|++||.|.. |.|..+. .+++|||||+|.+. ++.+||..+ +. .|+|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45789999999999999999999999999966 5554443 33789999999999 999999998 87 999999
Q ss_pred eEEeecccc
Q 012554 359 VVVEPKKST 367 (461)
Q Consensus 359 i~V~~a~~~ 367 (461)
|+|++++++
T Consensus 100 l~V~~a~~~ 108 (131)
T 2m2b_A 100 INVEFAKGS 108 (131)
T ss_dssp CCCEECCCS
T ss_pred EEEEECCCC
Confidence 999999876
No 122
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.49 E-value=8.5e-14 Score=116.05 Aligned_cols=74 Identities=24% Similarity=0.368 Sum_probs=68.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeeccc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKS 366 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~ 366 (461)
...++|||+|||+++|+++|+++|++||.|..+.|. +|||||+|.+.++|++||+.+ +..|+|+.|+|+++++
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 457899999999999999999999999999986553 689999999999999999987 9999999999999987
Q ss_pred c
Q 012554 367 T 367 (461)
Q Consensus 367 ~ 367 (461)
+
T Consensus 103 ~ 103 (108)
T 2jvo_A 103 P 103 (108)
T ss_dssp C
T ss_pred C
Confidence 5
No 123
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.48 E-value=8.1e-14 Score=115.45 Aligned_cols=79 Identities=15% Similarity=0.201 Sum_probs=69.4
Q ss_pred CCCEEEEcCCCCCC------CHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCc-eeE
Q 012554 289 EGPSIYLKGLPPSA------THALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGH-RVV 360 (461)
Q Consensus 289 ~~~~lfV~nLp~~~------te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~-~i~ 360 (461)
..++|||+|||+.+ |+++|+++|++||.|..+.|...+.+++|||||+|.+.++|++||..+ +..|+|+ .|+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~ 93 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 93 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEE
Confidence 46899999999999 789999999999999997654223347899999999999999999998 9999998 999
Q ss_pred Eeecccc
Q 012554 361 VEPKKST 367 (461)
Q Consensus 361 V~~a~~~ 367 (461)
|.++...
T Consensus 94 V~~a~~~ 100 (105)
T 2nlw_A 94 VNLFTDF 100 (105)
T ss_dssp EECSCCC
T ss_pred EEEcchH
Confidence 9998653
No 124
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.9e-14 Score=119.72 Aligned_cols=79 Identities=20% Similarity=0.283 Sum_probs=70.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc--CCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ--KGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~--k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
.+.++|||+|||+++++++|+++|++||.|..+.|..+.. +.+|||||+|.+.++|++|| .+ +..|+|+.|+|+++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 4568999999999999999999999999999976644432 37899999999999999999 65 99999999999999
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
+++
T Consensus 102 ~~~ 104 (114)
T 2cq4_A 102 QAE 104 (114)
T ss_dssp HHH
T ss_pred CCC
Confidence 876
No 125
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.48 E-value=3.6e-14 Score=114.98 Aligned_cols=79 Identities=14% Similarity=0.113 Sum_probs=67.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc--CCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ--KGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~--k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
...++|||+|||+++|+++|+++|++||.|..+.+..+.. +.++||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 3468999999999999999999999999998765655433 36899999999999999999987 99999999999987
Q ss_pred cc
Q 012554 365 KS 366 (461)
Q Consensus 365 ~~ 366 (461)
..
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 53
No 126
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.48 E-value=1.3e-14 Score=126.54 Aligned_cols=79 Identities=18% Similarity=0.177 Sum_probs=66.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc-CCccEEEEEEccHHHHHHHHHhCCCcccCceeEEeeccc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ-KGFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEPKKS 366 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~-k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~a~~ 366 (461)
...++|||+|||+++|+++|+++|++|| |..|.|..+.+ +++|||||+|++.++|++||+..+..|+|+.|+|..+.+
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~ 122 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNST 122 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCC
Confidence 4578999999999999999999999999 66655444332 378999999999999999994339999999999998776
Q ss_pred c
Q 012554 367 T 367 (461)
Q Consensus 367 ~ 367 (461)
+
T Consensus 123 ~ 123 (139)
T 2hgn_A 123 T 123 (139)
T ss_dssp S
T ss_pred C
Confidence 4
No 127
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.5e-14 Score=113.49 Aligned_cols=77 Identities=22% Similarity=0.361 Sum_probs=67.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecc
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKK 365 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~ 365 (461)
+.++|||+|||+++++++|+++|++||.|..+.|..+. .+++|||||+|.+.++|++||+.+ +..|+|+.|+|.+.+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 47899999999999999999999999999997665543 237899999999999999999988 889999998887654
No 128
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.48 E-value=6.3e-14 Score=113.82 Aligned_cols=77 Identities=19% Similarity=0.223 Sum_probs=69.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeeccc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKS 366 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~ 366 (461)
.+.++|||+|||+++++++|+++|++||.|..+ ....+++|||||+|.+.++|++||+.+ +..|+|+.|+|+++++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE---EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe---CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 457899999999999999999999999998763 344457899999999999999999988 8999999999999987
Q ss_pred c
Q 012554 367 T 367 (461)
Q Consensus 367 ~ 367 (461)
+
T Consensus 91 ~ 91 (96)
T 1fjc_A 91 K 91 (96)
T ss_dssp S
T ss_pred C
Confidence 5
No 129
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.48 E-value=2.8e-14 Score=117.12 Aligned_cols=78 Identities=22% Similarity=0.348 Sum_probs=66.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC---cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEee
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT---QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEP 363 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~---~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~ 363 (461)
...++|||+|||+++++++|+++|++|| |..+.|..+. .+++|||||+|.+.++|++|| .+ +..|+|+.|+|++
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 3478999999999999999999999999 9986654443 237899999999999999999 67 9999999999999
Q ss_pred cccc
Q 012554 364 KKST 367 (461)
Q Consensus 364 a~~~ 367 (461)
++++
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 8764
No 130
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.48 E-value=1.6e-13 Score=117.87 Aligned_cols=79 Identities=13% Similarity=0.192 Sum_probs=68.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHH----HHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEe
Q 012554 288 AEGPSIYLKGLPPSATHALLE----NEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVE 362 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~----~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~ 362 (461)
.+.++|||+||++.+++++|+ ++|++||.|..|.+. ...+++|||||+|.+.++|.+||..+ +..|.|+.|+|.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~-~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD-LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC-CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec-cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 347899999999999999876 699999999885432 23458999999999999999999999 999999999999
Q ss_pred ecccc
Q 012554 363 PKKST 367 (461)
Q Consensus 363 ~a~~~ 367 (461)
+++.+
T Consensus 106 ~a~~~ 110 (127)
T 2a3j_A 106 FSETP 110 (127)
T ss_dssp ECCCC
T ss_pred EccCc
Confidence 99876
No 131
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.47 E-value=4e-14 Score=109.55 Aligned_cols=73 Identities=25% Similarity=0.387 Sum_probs=63.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhCCCcccCceeEEeec
Q 012554 292 SIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEPK 364 (461)
Q Consensus 292 ~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~a 364 (461)
+|||+|||+++++++|+++|++||.|..+.|..+. .+++|||||+|.+.++|++||+..+..|+|+.|+|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 58999999999999999999999999986554442 23789999999999999999984499999999999874
No 132
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=3.8e-14 Score=110.10 Aligned_cols=74 Identities=19% Similarity=0.338 Sum_probs=66.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhCCCcccCceeEEeec
Q 012554 291 PSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEPK 364 (461)
Q Consensus 291 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~a 364 (461)
++|||+|||.++++++|+++|++||.|..+.|..+. .+++|||||+|.+.++|++|++.+...|+|+.|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 479999999999999999999999999987665443 33789999999999999999999898899999999876
No 133
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=2e-13 Score=108.21 Aligned_cols=74 Identities=27% Similarity=0.433 Sum_probs=65.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC--CCcccCceeEEeecc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS--PIVISGHRVVVEPKK 365 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~--~~~i~g~~i~V~~a~ 365 (461)
...++|||+|||.++++++|+++|++||.|..+.| .. .++||||+|.+.++|++|++.+ +..|+|+.|+|++++
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~--~~--~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITV--VQ--RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEE--EG--GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEE--EC--CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 45789999999999999999999999999998544 32 4789999999999999999975 788999999999875
No 134
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.47 E-value=1.5e-13 Score=116.43 Aligned_cols=80 Identities=21% Similarity=0.225 Sum_probs=70.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCC---eeEeEEEEeCc-CCccEEEEEEccHHHHHHHHHhCCCcccCceeEEee
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGT---IRAGGIQVKTQ-KGFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEP 363 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~---i~~~~v~~~~~-k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~ 363 (461)
.+.++|||+|||+++|+++|+++|++||. |..+.|..+.. +++|||||+|.+.++|++||+..+..|+|+.|+|.+
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~ 94 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFK 94 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEE
Confidence 45789999999999999999999999999 77776665543 378999999999999999999449999999999999
Q ss_pred cccc
Q 012554 364 KKST 367 (461)
Q Consensus 364 a~~~ 367 (461)
+..+
T Consensus 95 a~~~ 98 (118)
T 2db1_A 95 SHRT 98 (118)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8765
No 135
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.21 E-value=3.7e-15 Score=125.75 Aligned_cols=80 Identities=19% Similarity=0.260 Sum_probs=70.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeE--------eEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccC
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRA--------GGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISG 356 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~--------~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g 356 (461)
.+.++|||+|||+++++++|+++|++||.|.. +.|..+. .+++|||||+|.+.++|++||+.+ +..|+|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45789999999999999999999999999987 5554442 237899999999999999999988 999999
Q ss_pred ceeEEeecccc
Q 012554 357 HRVVVEPKKST 367 (461)
Q Consensus 357 ~~i~V~~a~~~ 367 (461)
+.|+|++++++
T Consensus 85 ~~l~V~~a~~~ 95 (116)
T 2lcw_A 85 NPIKVSFATRR 95 (116)
Confidence 99999999876
No 136
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.46 E-value=1.2e-13 Score=123.83 Aligned_cols=79 Identities=19% Similarity=0.275 Sum_probs=70.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecc
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKK 365 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~ 365 (461)
+.++|||+|||+++++++|+++|++||.|..|.|..+. .+++|||||+|.+.++|++||..+ +..|+|+.|+|.+++
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 150 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 150 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 47899999999999999999999999999997765542 236899999999999999999987 999999999999998
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
++
T Consensus 151 ~~ 152 (165)
T 1rk8_A 151 VK 152 (165)
T ss_dssp EC
T ss_pred CC
Confidence 76
No 137
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.46 E-value=1.4e-13 Score=117.29 Aligned_cols=80 Identities=16% Similarity=0.300 Sum_probs=71.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC-cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT-QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKK 365 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~-~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~ 365 (461)
...++|||+|||.++++++|+++|++||.|..+.|..+. .+++|||||+|.+.++|++||+.+ +..|+|+.|+|+++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 457899999999999999999999999999997665543 227899999999999999999977 999999999999988
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
+.
T Consensus 113 ~~ 114 (124)
T 2kt5_A 113 SQ 114 (124)
T ss_dssp CT
T ss_pred CC
Confidence 75
No 138
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.46 E-value=7.3e-14 Score=113.58 Aligned_cols=79 Identities=19% Similarity=0.251 Sum_probs=69.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHH----HHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEe
Q 012554 288 AEGPSIYLKGLPPSATHALLE----NEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVE 362 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~----~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~ 362 (461)
.+.++|||+|||.++++++|+ ++|++||.|..+.|. ...+++|||||+|.+.++|++|++.+ +..|+|+.|+|+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~-~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVS-RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECC-HHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEE-cCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 457899999999999999999 999999999985442 22347899999999999999999987 999999999999
Q ss_pred ecccc
Q 012554 363 PKKST 367 (461)
Q Consensus 363 ~a~~~ 367 (461)
+++++
T Consensus 85 ~a~~~ 89 (97)
T 1nu4_A 85 YAKTD 89 (97)
T ss_dssp ECSSC
T ss_pred EccCC
Confidence 99875
No 139
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.3e-13 Score=117.76 Aligned_cols=79 Identities=25% Similarity=0.340 Sum_probs=68.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
.+.++|||+|||+++|+++|+++|++||.|..+.+.++. .+.+|||||+|.+.++|++||+ + +..|+|+.|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 457899999999999999999999999999764344432 2378999999999999999999 6 99999999999998
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
..+
T Consensus 102 ~~~ 104 (124)
T 1wel_A 102 TKK 104 (124)
T ss_dssp CHH
T ss_pred CHH
Confidence 765
No 140
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.1e-13 Score=115.00 Aligned_cols=80 Identities=20% Similarity=0.292 Sum_probs=69.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCC-eeEeEEE-EeCc--CCccEEEEEEccHHHHHHHHHhC---CCcccCceeE
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGT-IRAGGIQ-VKTQ--KGFCFGFVEFEEENAVQSAIEAS---PIVISGHRVV 360 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~-i~~~~v~-~~~~--k~~g~aFVeF~~~~~a~~Al~~~---~~~i~g~~i~ 360 (461)
.+.++|||+|||+++|+++|+++|.+||. |..+.|. .+.. +++|||||+|.+.++|.+||+.+ +..|+|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35789999999999999999999999998 9986543 2222 37899999999999999999986 3789999999
Q ss_pred Eeecccc
Q 012554 361 VEPKKST 367 (461)
Q Consensus 361 V~~a~~~ 367 (461)
|++++++
T Consensus 86 V~~a~~~ 92 (109)
T 2dis_A 86 VDWAEPE 92 (109)
T ss_dssp EEESCSS
T ss_pred EEEcCCC
Confidence 9999886
No 141
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.45 E-value=2.1e-13 Score=114.53 Aligned_cols=79 Identities=20% Similarity=0.265 Sum_probs=70.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeeccc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKS 366 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~ 366 (461)
...++|||+|||+++|+++|+++|++||.|..+.|.. ..+++|||||+|.+.++|.+||+.+ +..|+|+.|+|.++++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGN-TPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEC-STTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee-CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 3478999999999999999999999999999865542 2337899999999999999999987 9999999999999987
Q ss_pred c
Q 012554 367 T 367 (461)
Q Consensus 367 ~ 367 (461)
+
T Consensus 85 ~ 85 (115)
T 3lqv_A 85 N 85 (115)
T ss_dssp H
T ss_pred C
Confidence 5
No 142
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.45 E-value=1.2e-13 Score=110.99 Aligned_cols=76 Identities=20% Similarity=0.312 Sum_probs=61.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhCCCcccCceeEEeecccc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEPKKST 367 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~a~~~ 367 (461)
.+.++|||+|||+++|+++|+++|++||.|..+.|. . +++|||||+|++.++|+++ ....+.++|+.|.|.+++++
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~--~-~srGfaFV~F~~~~~A~~~-~~~~~~~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIP--K-PFRAFAFVTFADDKVAQSL-CGEDLIIKGISVHISNAEPK 84 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECC--S-SCCSEEEEEESCHHHHHHH-TTCEEEETTEEEEEEECC--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEe--e-CCCCEEEEEECCHHHHHHH-cCCCcccCCEEEEEEEcCCC
Confidence 457899999999999999999999999999986543 2 3789999999999998843 22255567999999999875
No 143
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.45 E-value=3.9e-14 Score=109.51 Aligned_cols=73 Identities=21% Similarity=0.393 Sum_probs=64.2
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhCCCcccCceeEEeec
Q 012554 292 SIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEPK 364 (461)
Q Consensus 292 ~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~a 364 (461)
+|||+|||.++++++|+++|++||.|..+.|..+. .+++|||||+|.+.++|++||+..+..|+|+.|+|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 58999999999999999999999999986554432 23789999999999999999997799999999999864
No 144
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=9.1e-14 Score=111.11 Aligned_cols=75 Identities=19% Similarity=0.288 Sum_probs=63.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhCCCcccCceeEEeecccc
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEPKKST 367 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~a~~~ 367 (461)
+.++|||+|||+++++++|+++|++||.|..+.| .. +++|||||+|.+.++|++++.. .+.++++.|+|.+++++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i--~~-~~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFI--PK-PFRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEPK 78 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEEC--CS-SCCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEE--ec-CCCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCCC
Confidence 4789999999999999999999999999998544 22 2789999999999999865332 56678999999998876
No 145
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.45 E-value=2.4e-13 Score=120.69 Aligned_cols=80 Identities=21% Similarity=0.326 Sum_probs=71.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEe--CcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVK--TQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~--~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
...++|||+|||+++|+++|+++|++||.|..+.|..+ +.+++|||||+|.+.++|++||+.+ +..|+|+.|+|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 44789999999999999999999999999998665444 2338899999999999999999998 99999999999999
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
+++
T Consensus 148 ~~~ 150 (158)
T 2kn4_A 148 RYG 150 (158)
T ss_dssp CCS
T ss_pred CCC
Confidence 876
No 146
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=1.5e-13 Score=115.14 Aligned_cols=75 Identities=20% Similarity=0.190 Sum_probs=67.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecccc
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKST 367 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~~ 367 (461)
..++|||+|||+++++++|+++|++||.|..|.| . +.++||||+|.+.++|++||+.+ +..|+|+.|+|++++..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i--~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLL--P--EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEC--C--SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE--e--CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 4679999999999999999999999999987433 2 36789999999999999999988 99999999999998765
No 147
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.45 E-value=8.6e-14 Score=120.90 Aligned_cols=80 Identities=20% Similarity=0.191 Sum_probs=70.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCC---eeEeEEEEeCc-CCccEEEEEEccHHHHHHHHHhCCCcccCceeEEee
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGT---IRAGGIQVKTQ-KGFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEP 363 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~---i~~~~v~~~~~-k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~ 363 (461)
.+.++|||+|||+++|+++|+++|++||. |..+.|..+.+ +++|||||+|.+.++|++||+..+..|+|+.|+|.+
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~~ 121 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFK 121 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEEE
Confidence 45789999999999999999999999999 77766665543 378999999999999999999339999999999998
Q ss_pred cccc
Q 012554 364 KKST 367 (461)
Q Consensus 364 a~~~ 367 (461)
+.++
T Consensus 122 a~~~ 125 (136)
T 2hgl_A 122 SHRT 125 (136)
T ss_dssp CCHH
T ss_pred CChH
Confidence 8665
No 148
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=4.7e-13 Score=112.21 Aligned_cols=80 Identities=19% Similarity=0.303 Sum_probs=69.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc-CCccEEEEEEccHHHHHHHHHhC-CCcc--------cCc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ-KGFCFGFVEFEEENAVQSAIEAS-PIVI--------SGH 357 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~-k~~g~aFVeF~~~~~a~~Al~~~-~~~i--------~g~ 357 (461)
.+.++|||+|||+++++++|+++|++||.|..+.|..+.. +++|||||+|.+.++|++||+.+ +..| .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 5678999999999999999999999999999977766542 27899999999999999999988 8888 577
Q ss_pred eeEEeecccc
Q 012554 358 RVVVEPKKST 367 (461)
Q Consensus 358 ~i~V~~a~~~ 367 (461)
.|+|.++.++
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 7999888764
No 149
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.44 E-value=2.8e-13 Score=120.62 Aligned_cols=76 Identities=20% Similarity=0.125 Sum_probs=67.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccC--ceeEEeeccc
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISG--HRVVVEPKKS 366 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g--~~i~V~~a~~ 366 (461)
..+|||+||++.+|+++|+++|++||.|+.+.| ..++.++||||+|++.++|++|++.| +..|.| +.|+|+++++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i--~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIIT--FTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 123 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEE--EESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEE--EeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence 568999999999999999999999999999655 32336789999999999999999999 999955 9999999998
Q ss_pred c
Q 012554 367 T 367 (461)
Q Consensus 367 ~ 367 (461)
+
T Consensus 124 ~ 124 (164)
T 1sjr_A 124 T 124 (164)
T ss_dssp S
T ss_pred C
Confidence 6
No 150
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.44 E-value=4.6e-14 Score=113.21 Aligned_cols=76 Identities=29% Similarity=0.384 Sum_probs=65.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecccc
Q 012554 291 PSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKST 367 (461)
Q Consensus 291 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~~ 367 (461)
++|||+|||.++++++|+++|++||.|..+.|..+. .+++|||||+|.+.+ |.+|+..+ +..|+|+.|+|+++.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 589999999999999999999999999986654443 237899999999999 99999998 99999999999999875
No 151
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=3.7e-13 Score=109.19 Aligned_cols=79 Identities=13% Similarity=0.252 Sum_probs=67.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeeccc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKS 366 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~ 366 (461)
...++|||+|||+++++++|+++|++||.|..+. .+..++..+.|||+|.+.++|++||..+ +..|+|+.|+|+++++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~-~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCE-QVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEE-EECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEE-EeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 3468999999999999999999999999999852 1333443445999999999999999987 9999999999999987
Q ss_pred c
Q 012554 367 T 367 (461)
Q Consensus 367 ~ 367 (461)
+
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 5
No 152
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.44 E-value=7.8e-14 Score=115.95 Aligned_cols=80 Identities=23% Similarity=0.150 Sum_probs=69.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCC---eeEeEEEEeCc-CCccEEEEEEccHHHHHHHHHhCCCcccCceeEEee
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGT---IRAGGIQVKTQ-KGFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEP 363 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~---i~~~~v~~~~~-k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~ 363 (461)
.+.++|||+|||+++|+++|+++|+.||. |..+.|..+.. +++|||||+|.+.++|++||...+..|+|+.|+|.+
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~ 88 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE 88 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEEE
Confidence 45899999999999999999999999998 77755544432 378999999999999999999339999999999999
Q ss_pred cccc
Q 012554 364 KKST 367 (461)
Q Consensus 364 a~~~ 367 (461)
+.++
T Consensus 89 a~~~ 92 (107)
T 2lmi_A 89 INNE 92 (107)
T ss_dssp CCHH
T ss_pred CCHH
Confidence 8775
No 153
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.44 E-value=4e-13 Score=116.61 Aligned_cols=77 Identities=26% Similarity=0.379 Sum_probs=67.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
.+.++|||+|||.++++++|+++|++||.|..+.|..+. .+.++||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 457999999999999999999999999999986554332 237899999999999999999988 89999999999874
No 154
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.43 E-value=1.2e-13 Score=119.85 Aligned_cols=80 Identities=20% Similarity=0.315 Sum_probs=70.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
.+.++|||+|||+++|+++|+++|++||.|..+.|..+. .+++|||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 347899999999999999999999999999986554432 237899999999999999999988 99999999999999
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
+++
T Consensus 125 ~~~ 127 (135)
T 2lea_A 125 RYG 127 (135)
T ss_dssp CCC
T ss_pred CCC
Confidence 876
No 155
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=1.1e-13 Score=118.10 Aligned_cols=80 Identities=16% Similarity=0.118 Sum_probs=69.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCe----eEeEEEEeC-cCCccEEEEEEccHHHHHHHHHhCCCcccCceeEEe
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTI----RAGGIQVKT-QKGFCFGFVEFEEENAVQSAIEASPIVISGHRVVVE 362 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i----~~~~v~~~~-~k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~ 362 (461)
.+.++|||+|||+++|+++|+++|++||.| ..+.|..+. .+++|||||+|.+.++|++||+..+..|++|.|+|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~ 100 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 100 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEE
Confidence 457899999999999999999999999975 465555543 337899999999999999999987889999999998
Q ss_pred ecccc
Q 012554 363 PKKST 367 (461)
Q Consensus 363 ~a~~~ 367 (461)
.+.++
T Consensus 101 ~a~~~ 105 (123)
T 2dha_A 101 RSTAA 105 (123)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 87765
No 156
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=2e-13 Score=113.97 Aligned_cols=78 Identities=17% Similarity=0.233 Sum_probs=67.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc-CCccEEEEEEccHHHHHHHHHhCCCcccCceeEEeecccc
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ-KGFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEPKKST 367 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~-k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~a~~~ 367 (461)
+.++|||+|||+++|+++|+++|++| .|..+.|..+.. +++|||||+|.+.++|++||...+..|+||.|+|..+..+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCcc
Confidence 35799999999999999999999999 888866654433 3789999999999999999954499999999999888765
No 157
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.43 E-value=6.8e-14 Score=114.80 Aligned_cols=77 Identities=21% Similarity=0.326 Sum_probs=66.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEE--eCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecc
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQV--KTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKK 365 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~--~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~ 365 (461)
..++|||+|||+++|+++|+++|++||.|.. .+.+ ...+++|||||+|.+.++|++||+ + +..|+|+.|+|++++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 4689999999999999999999999998865 1222 233478999999999999999999 7 999999999999998
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
++
T Consensus 94 ~~ 95 (101)
T 1fj7_A 94 GR 95 (101)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 158
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.42 E-value=1.5e-13 Score=117.70 Aligned_cols=79 Identities=20% Similarity=0.202 Sum_probs=66.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCee--EeEEEEeCc-CCccEEEEEEccHHHHHHHHHhCCCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIR--AGGIQVKTQ-KGFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~--~~~v~~~~~-k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~a 364 (461)
.+.++|||+|||+++|+++|+++|++| .|. .|.|..+.+ +++|||||+|.+.++|++||+.++..|+||.|+|..+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKS 118 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEEC
Confidence 346899999999999999999999999 566 544433322 3789999999999999999997799999999999887
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
..+
T Consensus 119 ~~~ 121 (126)
T 2hgm_A 119 SQE 121 (126)
T ss_dssp CHH
T ss_pred CHH
Confidence 653
No 159
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.42 E-value=2e-13 Score=109.16 Aligned_cols=74 Identities=15% Similarity=0.282 Sum_probs=67.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecccc
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKST 367 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~~ 367 (461)
..++|||+|||+++++++|+++|++| .|..+.| + +++|||||+|.+.++|++||+.+ +..|+|+.|+|+++..+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i--~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYV--D--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEE--E--GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEE--e--CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 36899999999999999999999999 8988655 2 57899999999999999999988 99999999999998765
No 160
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.42 E-value=2.4e-13 Score=119.83 Aligned_cols=77 Identities=25% Similarity=0.364 Sum_probs=69.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeeccc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKS 366 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~ 366 (461)
...++|||+|||+++|+++|+++|++||.|..+.| ..+ ++|||||+|.+.++|.+||..+ +..|+|+.|+|+++++
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i--~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWV--ARN-PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEE--CSS-SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEE--eeC-CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 45789999999999999999999999999998544 333 6899999999999999999987 9999999999999987
Q ss_pred c
Q 012554 367 T 367 (461)
Q Consensus 367 ~ 367 (461)
+
T Consensus 148 ~ 148 (150)
T 2i2y_A 148 E 148 (150)
T ss_dssp C
T ss_pred C
Confidence 5
No 161
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.42 E-value=4.1e-13 Score=125.37 Aligned_cols=78 Identities=28% Similarity=0.430 Sum_probs=72.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecccc
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKST 367 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~~ 367 (461)
.++|||+||++++|+++|+++|++||.|..+.|..+.+.++|||||+|.+.++|++||+.+ +..|+|+.|+|.+++++
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 4689999999999999999999999999998887776668999999999999999999988 99999999999999876
No 162
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.41 E-value=2.7e-13 Score=118.59 Aligned_cols=79 Identities=22% Similarity=0.306 Sum_probs=69.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEe------EEEE-eCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeE
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAG------GIQV-KTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVV 360 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~------~v~~-~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~ 360 (461)
+.++|||+|||+++|+++|+++|++||.|..+ .|.+ ...+++|||||+|.+.++|.+||..+ +..|+|+.|+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 123 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 123 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 46899999999999999999999999998763 2322 24458999999999999999999987 9999999999
Q ss_pred Eeecccc
Q 012554 361 VEPKKST 367 (461)
Q Consensus 361 V~~a~~~ 367 (461)
|.++++.
T Consensus 124 V~~a~~~ 130 (143)
T 3egn_A 124 VQFARSA 130 (143)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9999875
No 163
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.40 E-value=7.9e-13 Score=120.81 Aligned_cols=78 Identities=22% Similarity=0.371 Sum_probs=69.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhCCCcccCceeEEeecccc
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEPKKST 367 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~a~~~ 367 (461)
.++|||+|||+++|+++|+++|++||.|..+.|..+. .+++|||||+|.+.++|.+||..++..|+|+.|.|.++.++
T Consensus 104 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~~k 183 (196)
T 1l3k_A 104 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 183 (196)
T ss_dssp CSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC--
T ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecCCh
Confidence 5899999999999999999999999999997776653 33789999999999999999988899999999999999887
No 164
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.40 E-value=3.1e-13 Score=111.05 Aligned_cols=78 Identities=19% Similarity=0.387 Sum_probs=70.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc-CCccEEEEEEccHHHHHHHHHhCCCcccCceeEEeecccc
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ-KGFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEPKKST 367 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~-k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~a~~~ 367 (461)
..++|||+|||+++++++|+++|++||.|..+.|..+.. +++|||||+|.+.++|++||. .+..|+|+.|.|.++.++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~~~ 86 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIRK 86 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECCcC
Confidence 468999999999999999999999999999977766542 278999999999999999999 888999999999998875
No 165
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.39 E-value=1.3e-12 Score=112.03 Aligned_cols=75 Identities=21% Similarity=0.156 Sum_probs=67.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccE-EEEEEccHHHHHHHHHhC-CCcccC--ceeEEeecc
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCF-GFVEFEEENAVQSAIEAS-PIVISG--HRVVVEPKK 365 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~-aFVeF~~~~~a~~Al~~~-~~~i~g--~~i~V~~a~ 365 (461)
.-+|||+||++.+|+++|+++|++||.|..+.|.. +.++| |||+|.+.++|++|++.| +..|.| +.|+|++++
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~---~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT---KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEE---ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEc---CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 56899999999999999999999999999965432 24677 999999999999999999 999988 899999999
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
++
T Consensus 105 ~~ 106 (130)
T 3zzy_A 105 LT 106 (130)
T ss_dssp CS
T ss_pred CC
Confidence 86
No 166
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.38 E-value=8.6e-13 Score=119.86 Aligned_cols=80 Identities=16% Similarity=0.300 Sum_probs=71.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC-cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT-QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKK 365 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~-~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~ 365 (461)
...++|||+|||+++++++|+++|++||.|..|.|..+. .+++|||||+|.+.++|++||+.+ +..|+|+.|+|+++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 557899999999999999999999999999987665443 237899999999999999999988 999999999999987
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
..
T Consensus 166 ~~ 167 (177)
T 2f3j_A 166 SQ 167 (177)
T ss_dssp SG
T ss_pred CC
Confidence 64
No 167
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.37 E-value=2.2e-12 Score=110.06 Aligned_cols=74 Identities=20% Similarity=0.095 Sum_probs=65.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccE-EEEEEccHHHHHHHHHhC-CCcccC--ceeEEeecc
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCF-GFVEFEEENAVQSAIEAS-PIVISG--HRVVVEPKK 365 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~-aFVeF~~~~~a~~Al~~~-~~~i~g--~~i~V~~a~ 365 (461)
...|||+||++.+|+++|+++|++||.|+.+.|. . + .|| |||+|.+.++|.+|++.| +..|.| +.|+|++++
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~-~--~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIF-K--R-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEE-E--S-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEE-e--C-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 4567899999999999999999999999997653 2 2 376 999999999999999998 999987 689999998
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
++
T Consensus 101 ~~ 102 (124)
T 2e5i_A 101 PT 102 (124)
T ss_dssp CS
T ss_pred CC
Confidence 86
No 168
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.35 E-value=1.7e-12 Score=103.09 Aligned_cols=70 Identities=21% Similarity=0.378 Sum_probs=61.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcC----C-------CeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccC
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKF----G-------TIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISG 356 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~----G-------~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g 356 (461)
+.++|||+|||+++++++|+++|++| | .|..+.+ . +.++||||+|.+.++|++|| .+ +..|+|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~--~--~~kg~afV~f~~~~~a~~A~-~l~g~~~~g 79 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI--N--QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 79 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE--C--SSSSEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEe--c--CCCcEEEEEcCCHHHHHHHH-hcCCCEECC
Confidence 46899999999999999999999999 8 8877433 2 34789999999999999999 77 999999
Q ss_pred ceeEEee
Q 012554 357 HRVVVEP 363 (461)
Q Consensus 357 ~~i~V~~ 363 (461)
+.|+|+.
T Consensus 80 ~~l~V~r 86 (87)
T 2hzc_A 80 QSLKIRR 86 (87)
T ss_dssp EECEEEC
T ss_pred eEEEEeC
Confidence 9999974
No 169
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=2.8e-12 Score=102.81 Aligned_cols=71 Identities=15% Similarity=0.236 Sum_probs=62.9
Q ss_pred CCCE-EEEcCCCCCCCHHH----HHHHHhcC-CCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEE
Q 012554 289 EGPS-IYLKGLPPSATHAL----LENEFRKF-GTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVV 361 (461)
Q Consensus 289 ~~~~-lfV~nLp~~~te~~----L~~~F~~~-G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V 361 (461)
+..+ |||+|||+++++++ |+++|++| |+|..+ ..|||||+|.+.++|++|++.| +..|.||.|+|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--------tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--------TGCSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--------CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--------ecCEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 3555 99999999999987 55899999 599773 1299999999999999999998 99999999999
Q ss_pred eecccc
Q 012554 362 EPKKST 367 (461)
Q Consensus 362 ~~a~~~ 367 (461)
.+++.+
T Consensus 79 ~~A~~~ 84 (96)
T 2diu_A 79 SFTPKN 84 (96)
T ss_dssp ESSCCS
T ss_pred EecCCC
Confidence 999987
No 170
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.34 E-value=2.9e-12 Score=117.96 Aligned_cols=78 Identities=18% Similarity=0.201 Sum_probs=69.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcC-CccEEEEEEccHHHHHHHHHhCCCcccCceeEEeeccc
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQK-GFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEPKKS 366 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k-~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~a~~ 366 (461)
..++|||+|||+++|+++|+++|++||.|..+.|..+..+ ++|||||+|++.++|++||..++..|+|+.|+|.+++.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 4689999999999999999999999999999766554333 78999999999999999998888899999999998765
No 171
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.34 E-value=2.9e-12 Score=119.57 Aligned_cols=79 Identities=22% Similarity=0.347 Sum_probs=70.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecc
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKK 365 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~ 365 (461)
+.++|||+|||+++|+++|+++|++||.|..|.|..+. .+++|||||+|.+.++|++||+.+ +..+.|+.|+|.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 46799999999999999999999999999997776543 347899999999999999999988 889999999999876
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
..
T Consensus 94 ~~ 95 (213)
T 4f02_A 94 RD 95 (213)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 172
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=2.4e-12 Score=107.98 Aligned_cols=76 Identities=12% Similarity=0.095 Sum_probs=65.8
Q ss_pred CCCCEEEE--cCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcc-----cCcee
Q 012554 288 AEGPSIYL--KGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVI-----SGHRV 359 (461)
Q Consensus 288 ~~~~~lfV--~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i-----~g~~i 359 (461)
.+.++||| +||++++++++|+++|++||.|..+. +.. .++||||+|.+.++|++|++.| +.+| .|+.|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~--i~~--~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l 98 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALL--MPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 98 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEE--CCT--TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEE--EeC--CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEE
Confidence 45789999 77999999999999999999998743 333 5789999999999999999999 8877 68889
Q ss_pred EEeecccc
Q 012554 360 VVEPKKST 367 (461)
Q Consensus 360 ~V~~a~~~ 367 (461)
.|.+++..
T Consensus 99 ~v~~a~~~ 106 (114)
T 2cq2_A 99 YLNFVEKV 106 (114)
T ss_dssp EEEEESCC
T ss_pred EEEecccC
Confidence 99988754
No 173
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.34 E-value=2.6e-12 Score=109.33 Aligned_cols=74 Identities=20% Similarity=0.335 Sum_probs=66.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeeccc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKS 366 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~ 366 (461)
.+.++|||+|| ++|+++|+++|++||.|..+.| . +.+|||||+|.+.++|++||+.+ +..|+|+.|+|.++++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i--~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM--D--PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEE--E--TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEE--e--CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 45789999996 6999999999999999988655 2 57899999999999999999887 9999999999999987
Q ss_pred c
Q 012554 367 T 367 (461)
Q Consensus 367 ~ 367 (461)
+
T Consensus 111 ~ 111 (121)
T 2bz2_A 111 Q 111 (121)
T ss_dssp S
T ss_pred C
Confidence 6
No 174
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.5e-12 Score=109.33 Aligned_cols=76 Identities=24% Similarity=0.425 Sum_probs=62.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC-----cCCccEEEEEEccHHHHHHHHHhCCCcccCceeEEe
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT-----QKGFCFGFVEFEEENAVQSAIEASPIVISGHRVVVE 362 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~-----~k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~ 362 (461)
...++|||+|||+++|+++|+++|++||.|. +.+..+. .+++|||||+|.+.++|++||+.+ ..++|+.|.+.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~~~~ 83 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLYLCV 83 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEEEec
Confidence 3478999999999999999999999999998 4333322 246899999999999999999988 45788888776
Q ss_pred ecc
Q 012554 363 PKK 365 (461)
Q Consensus 363 ~a~ 365 (461)
...
T Consensus 84 ~~~ 86 (114)
T 2dnl_A 84 SSP 86 (114)
T ss_dssp CCS
T ss_pred cCC
Confidence 554
No 175
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.33 E-value=3.6e-12 Score=116.37 Aligned_cols=80 Identities=23% Similarity=0.385 Sum_probs=71.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc--CCccEEEEEEccHHHHHHHHHhCCCcccCceeEEeecc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ--KGFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEPKK 365 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~--k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~a~ 365 (461)
.+.++|||+|||+++|+++|+++|++||.|..+.|..+.. +++|||||+|.+.++|++||+..+..|+|+.|.|.++.
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~ 90 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAV 90 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeeccc
Confidence 4578999999999999999999999999999977665532 36899999999999999999888999999999999987
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
.+
T Consensus 91 ~~ 92 (196)
T 1l3k_A 91 SR 92 (196)
T ss_dssp C-
T ss_pred Cc
Confidence 65
No 176
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.32 E-value=4.2e-12 Score=117.99 Aligned_cols=76 Identities=20% Similarity=0.229 Sum_probs=68.0
Q ss_pred CCCEEEEcCCC-CCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeeccc
Q 012554 289 EGPSIYLKGLP-PSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKS 366 (461)
Q Consensus 289 ~~~~lfV~nLp-~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~ 366 (461)
++++|||+||+ +.+|+++|+++|++||.|..+.| ..+ .+|||||+|.+.++|++||+.| +..|.|+.|+|.+++.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i--~~~-~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKF--MKS-KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEE--CTT-STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEE--ecC-CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 57899999999 89999999999999999998544 332 5799999999999999999988 9999999999999875
Q ss_pred c
Q 012554 367 T 367 (461)
Q Consensus 367 ~ 367 (461)
+
T Consensus 80 ~ 80 (205)
T 3tyt_A 80 P 80 (205)
T ss_dssp S
T ss_pred C
Confidence 4
No 177
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.31 E-value=4.5e-12 Score=112.73 Aligned_cols=79 Identities=24% Similarity=0.336 Sum_probs=70.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecc
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKK 365 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~ 365 (461)
+.++|||+|||.++++++|+++|++||.|..+.|..+. .+++|||||+|.+.++|++|++.+ +..|+|+.|+|.+++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999986665442 227899999999999999999977 999999999999988
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
++
T Consensus 82 ~~ 83 (168)
T 1b7f_A 82 PG 83 (168)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 178
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.31 E-value=6.3e-12 Score=111.37 Aligned_cols=78 Identities=15% Similarity=0.317 Sum_probs=69.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeeccc
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKS 366 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~ 366 (461)
.++|||+|||.++++++|+++|++||.|..+.+..+. .+++|||||+|.+.++|++||+.+ +..|+|+.|+|.++++
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5799999999999999999999999999997665543 236799999999999999999977 9999999999999886
Q ss_pred c
Q 012554 367 T 367 (461)
Q Consensus 367 ~ 367 (461)
.
T Consensus 82 ~ 82 (167)
T 1fxl_A 82 S 82 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 179
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.31 E-value=7.9e-12 Score=110.64 Aligned_cols=77 Identities=18% Similarity=0.350 Sum_probs=69.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc--CCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecc
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ--KGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKK 365 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~--k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~ 365 (461)
..++|||+|||.++|+++|+++|++||.|..+.|..+.. +++|||||+|.+.++|.+||..+ +..|+|+.|+|.+++
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 467999999999999999999999999999977665532 37899999999999999999987 999999999999986
No 180
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.30 E-value=3.3e-11 Score=116.89 Aligned_cols=75 Identities=20% Similarity=0.307 Sum_probs=67.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCccc-CceeEEeecc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVIS-GHRVVVEPKK 365 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~-g~~i~V~~a~ 365 (461)
...++|||+||+.++++++|+++|++||.|..+.|. .+ .+|||||+|.+.++|.+||+.+ +..|+ |+.|+|++++
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~--~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV--PG-RHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe--cC-CCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 567899999999999999999999999999986543 33 3589999999999999999999 99999 9999999986
No 181
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.30 E-value=7.7e-12 Score=115.98 Aligned_cols=79 Identities=19% Similarity=0.353 Sum_probs=71.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecc
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKK 365 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~ 365 (461)
..++|||+|||.++|+++|+++|++||.|..+.|..+. .+++|||||+|.+.++|.+||+.+ +..|+|+.|+|.+++
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 203 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECS
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEec
Confidence 36899999999999999999999999999997766553 236899999999999999999987 999999999999998
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
++
T Consensus 204 ~~ 205 (216)
T 2qfj_A 204 TP 205 (216)
T ss_dssp SC
T ss_pred CC
Confidence 86
No 182
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.29 E-value=7e-12 Score=114.66 Aligned_cols=80 Identities=15% Similarity=0.319 Sum_probs=71.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
...++|||+|||+++++++|+++|++||.|..+.|..+. .+++|||||+|.+.++|.+||+.+ +..|+|+.|+|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 347899999999999999999999999999997766553 336899999999999999999987 99999999999999
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
+++
T Consensus 192 ~~~ 194 (198)
T 2yh0_A 192 SVG 194 (198)
T ss_dssp CCC
T ss_pred CCC
Confidence 875
No 183
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.28 E-value=6.3e-12 Score=111.29 Aligned_cols=77 Identities=19% Similarity=0.286 Sum_probs=68.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc-CCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecccc
Q 012554 291 PSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ-KGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKST 367 (461)
Q Consensus 291 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~-k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~~ 367 (461)
++|||+|||.++|+++|+++|++||.|..+.|..+.. +++|||||+|.+.++|.+|++.+ +..|+|+.|+|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 5899999999999999999999999999866644432 37899999999999999999777 99999999999998765
No 184
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.28 E-value=3.7e-12 Score=113.29 Aligned_cols=78 Identities=19% Similarity=0.392 Sum_probs=68.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhCCCcccCceeEEeecccc
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEPKKST 367 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~a~~~ 367 (461)
.++|||+|||.++++++|+++|++||.|..+.|..+. .+++|||||+|.+.++|.+|++..+..|+|+.|+|.++.++
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCCC
Confidence 5689999999999999999999999999986554442 33789999999999999999984489999999999999874
No 185
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.27 E-value=7.3e-12 Score=111.87 Aligned_cols=75 Identities=16% Similarity=0.349 Sum_probs=68.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
.++|||+|||.++|+++|+++|++||.|..+.|..+. .+++|||||+|.+.++|.+|++.+ +..|+|+.|+|+++
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 6789999999999999999999999999997776653 236899999999999999999987 99999999999986
No 186
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.25 E-value=8.6e-12 Score=105.66 Aligned_cols=76 Identities=18% Similarity=0.187 Sum_probs=64.8
Q ss_pred CEEEEcCC----CCCCCHHHHHHHHhcCCCeeEeEEEEeCcC--CccEEEEEEcc----HHH----HHHHHH--hC-CCc
Q 012554 291 PSIYLKGL----PPSATHALLENEFRKFGTIRAGGIQVKTQK--GFCFGFVEFEE----ENA----VQSAIE--AS-PIV 353 (461)
Q Consensus 291 ~~lfV~nL----p~~~te~~L~~~F~~~G~i~~~~v~~~~~k--~~g~aFVeF~~----~~~----a~~Al~--~~-~~~ 353 (461)
..|||+|| ++.+++.+|+++|+.||.|..|.+..+... ++|||||+|.+ ++. |.+|+. .+ +..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 999999999999999999999888777554 79999999995 322 788888 55 999
Q ss_pred ccCceeEEeeccc
Q 012554 354 ISGHRVVVEPKKS 366 (461)
Q Consensus 354 i~g~~i~V~~a~~ 366 (461)
|+|+.|+|..-+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999997653
No 187
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.24 E-value=2.3e-11 Score=117.94 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=70.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHH----HHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEe
Q 012554 288 AEGPSIYLKGLPPSATHALLE----NEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVE 362 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~----~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~ 362 (461)
.+.++|||+|||+++|+++|+ ++|++||.|..|.|. ...+++|||||+|.+.++|++||+.+ +..|.|+.|+|.
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~-~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVS-RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEc-CCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 458999999999999999977 899999999986543 24458899999999999999999888 999999999999
Q ss_pred ecccc
Q 012554 363 PKKST 367 (461)
Q Consensus 363 ~a~~~ 367 (461)
+++.+
T Consensus 86 ~a~~~ 90 (282)
T 3pgw_A 86 YAKTD 90 (282)
T ss_pred EeccC
Confidence 98765
No 188
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.24 E-value=7.7e-12 Score=112.28 Aligned_cols=76 Identities=20% Similarity=0.229 Sum_probs=67.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecccc
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKST 367 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~~ 367 (461)
..++|||+|||.++|+++|+++|++||.|..+ ....+++|||||+|.+.++|.+||..+ +..|+|+.|+|++++++
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE---CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe---cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 46899999999999999999999999999763 333448899999999999999999987 99999999999999874
No 189
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.23 E-value=1.7e-11 Score=113.63 Aligned_cols=80 Identities=23% Similarity=0.350 Sum_probs=68.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a 364 (461)
.+.++|||+|||.++|+++|+++|++||.|..+.|..+. .++++||||+|.+.++|++||+.+ +..|+|+.|+|.+.
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 457899999999999999999999999999986654432 237899999999999999999977 99999999999876
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
...
T Consensus 106 ~~~ 108 (216)
T 2qfj_A 106 SNI 108 (216)
T ss_dssp SCC
T ss_pred CCc
Confidence 553
No 190
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.23 E-value=1.6e-11 Score=116.18 Aligned_cols=76 Identities=18% Similarity=0.284 Sum_probs=66.9
Q ss_pred CCCCEEEEcCCCCCC---------CHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcc---
Q 012554 288 AEGPSIYLKGLPPSA---------THALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVI--- 354 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~---------te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i--- 354 (461)
.+.++|||+||+..+ ++++|+++|++||.|..+.|. ..+|||||+|.+.++|+.|++.| +..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~----~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~ 207 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV----ESKNCGFVKFKYQANAEFAKEAMSNQTLLLP 207 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE----GGGTEEEEEESSHHHHHHHHHHHTTCCCCCT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE----CCCCEEEEEeCCHHHHHHHHHHhCCCEEecc
Confidence 568999999999998 799999999999999986543 25789999999999999999998 8888
Q ss_pred ---------cCceeEEeecccc
Q 012554 355 ---------SGHRVVVEPKKST 367 (461)
Q Consensus 355 ---------~g~~i~V~~a~~~ 367 (461)
.|+.|.|.+++.+
T Consensus 208 ~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 208 SDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp TSTTGGGGGGSCCCEEEECC--
T ss_pred ccccccccCCCCEEEEEEccCC
Confidence 8999999999875
No 191
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.22 E-value=1.1e-11 Score=110.27 Aligned_cols=78 Identities=22% Similarity=0.380 Sum_probs=67.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhCCCcccCceeEEeeccc
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEPKKS 366 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~a~~ 366 (461)
+.++|||+|||+++|+++|+++|++||.|..+.|..+. .+++|||||+|.+.++|++||+. ...|+|+.|.|.++.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccc
Confidence 46899999999999999999999999999986554432 33789999999999999999986 6789999999998776
Q ss_pred c
Q 012554 367 T 367 (461)
Q Consensus 367 ~ 367 (461)
+
T Consensus 81 ~ 81 (167)
T 2cjk_A 81 R 81 (167)
T ss_dssp H
T ss_pred h
Confidence 4
No 192
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.21 E-value=4.8e-11 Score=98.80 Aligned_cols=80 Identities=15% Similarity=0.097 Sum_probs=68.2
Q ss_pred CCCCEEEEcCCCC-----CCCHHHHHHHHhcCCCeeEeEEEEeC---cCCccEEEEEEccHHHHHHHHHhC-CCcccCce
Q 012554 288 AEGPSIYLKGLPP-----SATHALLENEFRKFGTIRAGGIQVKT---QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHR 358 (461)
Q Consensus 288 ~~~~~lfV~nLp~-----~~te~~L~~~F~~~G~i~~~~v~~~~---~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~ 358 (461)
.+++.|+|+||.. +-++++|+++|++||.|..+.|..+. .+++||+||+|.+.++|.+|++.| +..++||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3578999999962 23789999999999999998776543 247899999999999999999998 99999999
Q ss_pred eEEeecccc
Q 012554 359 VVVEPKKST 367 (461)
Q Consensus 359 i~V~~a~~~ 367 (461)
|+|.++...
T Consensus 86 i~v~~a~~~ 94 (105)
T 2pe8_A 86 VKACFYNLD 94 (105)
T ss_dssp CEEEECCHH
T ss_pred EEEEEcCHH
Confidence 999998765
No 193
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.21 E-value=2.7e-11 Score=114.24 Aligned_cols=77 Identities=19% Similarity=0.203 Sum_probs=68.1
Q ss_pred CCCCEEEEcCCCC-CCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecc
Q 012554 288 AEGPSIYLKGLPP-SATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKK 365 (461)
Q Consensus 288 ~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~ 365 (461)
.+.++|||+|||+ ++++++|+++|++||.|..+.| ..++ +|||||+|.+.++|++||+.+ +..|+|+.|+|.+++
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i--~~~~-~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 108 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKI--LFNK-KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 108 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEE--CCTT-SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--EECC-CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 3478999999999 9999999999999999998544 3333 789999999999999999977 999999999999988
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
.+
T Consensus 109 ~~ 110 (229)
T 2adc_A 109 HQ 110 (229)
T ss_dssp CC
T ss_pred Cc
Confidence 65
No 194
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=1.4e-10 Score=96.88 Aligned_cols=78 Identities=17% Similarity=0.169 Sum_probs=66.3
Q ss_pred CCCCEEEEcCCCCCCC-----------HHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCccc
Q 012554 288 AEGPSIYLKGLPPSAT-----------HALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVIS 355 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~t-----------e~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~ 355 (461)
.+.+.|+|+||..... +++|+++|++||.|..+.| .....+|||||+|.+.++|++||..+ +..|+
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i--~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL--FDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE--ETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE--ecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4588999999944332 5799999999999999643 32337899999999999999999999 99999
Q ss_pred CceeEEeecccc
Q 012554 356 GHRVVVEPKKST 367 (461)
Q Consensus 356 g~~i~V~~a~~~ 367 (461)
|+.|+|.++.++
T Consensus 91 gr~l~v~~a~~~ 102 (112)
T 2dit_A 91 GRQITAQAWDGT 102 (112)
T ss_dssp TEECEEEECCSC
T ss_pred CcEEEEEEeCCC
Confidence 999999998875
No 195
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.20 E-value=3.5e-11 Score=107.50 Aligned_cols=75 Identities=20% Similarity=0.232 Sum_probs=65.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcC-CccEEEEEEccHHHHHHHHHhC-CCccc---CceeEEeec
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQK-GFCFGFVEFEEENAVQSAIEAS-PIVIS---GHRVVVEPK 364 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k-~~g~aFVeF~~~~~a~~Al~~~-~~~i~---g~~i~V~~a 364 (461)
.++|||+|||+++|+++|+++|++||.|..+.|..+... ++|||||+|.+.++|.+||+.+ +..+. ++.|+|.++
T Consensus 95 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 95 DRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp GSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred CCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 578999999999999999999999999999777555333 6899999999999999999988 66665 499999886
No 196
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.19 E-value=5.4e-11 Score=105.63 Aligned_cols=75 Identities=24% Similarity=0.409 Sum_probs=66.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccC--ceeEEeec
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISG--HRVVVEPK 364 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g--~~i~V~~a 364 (461)
.++|||+|||.++++++|+++|++||.|..+.|..+. .+++|||||+|.+.++|.+|++.+ +..|+| +.|+|.++
T Consensus 89 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 89 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 5799999999999999999999999999997665543 236899999999999999999988 889977 99999875
No 197
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.18 E-value=6.7e-11 Score=105.63 Aligned_cols=79 Identities=16% Similarity=0.271 Sum_probs=66.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc----CCccEEEEEEccHHHHHHHHHhC-CCccc---CceeE
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ----KGFCFGFVEFEEENAVQSAIEAS-PIVIS---GHRVV 360 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~----k~~g~aFVeF~~~~~a~~Al~~~-~~~i~---g~~i~ 360 (461)
+.++|||+|||+++|+++|+++|++||.|..+.|..+.. +++|||||+|.+.++|++||+.+ +..+. ++.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 468999999999999999999999999999977665532 46899999999999999999987 66654 56777
Q ss_pred Eeecccc
Q 012554 361 VEPKKST 367 (461)
Q Consensus 361 V~~a~~~ 367 (461)
+..+...
T Consensus 82 ~~~~~~~ 88 (175)
T 3nmr_A 82 MKPADSE 88 (175)
T ss_dssp EEECGGG
T ss_pred Ecccccc
Confidence 7776654
No 198
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.17 E-value=7.5e-11 Score=104.35 Aligned_cols=75 Identities=27% Similarity=0.426 Sum_probs=65.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCce--eEEeec
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHR--VVVEPK 364 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~--i~V~~a 364 (461)
.++|||+|||.++++++|+++|++||.|..+.|..+. ++++|||||+|.+.++|.+|++.+ +..|+|+. |+|.++
T Consensus 88 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 88 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 5789999999999999999999999999997665553 226899999999999999999988 99999975 777764
No 199
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.16 E-value=3.6e-11 Score=110.23 Aligned_cols=76 Identities=16% Similarity=0.184 Sum_probs=67.3
Q ss_pred CCCEEEEcCCCC-CCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeeccc
Q 012554 289 EGPSIYLKGLPP-SATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKS 366 (461)
Q Consensus 289 ~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~ 366 (461)
..++|||+|||. ++++++|+++|++||.|..+ .+..+ .+|||||+|.+.++|++||+.+ +..|+|+.|+|.+++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v--~i~~~-~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRV--KILFN-KKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEE--ECSTT-CSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEE--EEEeC-CCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 368999999999 99999999999999999884 34433 3789999999999999999977 9999999999999886
Q ss_pred c
Q 012554 367 T 367 (461)
Q Consensus 367 ~ 367 (461)
+
T Consensus 79 ~ 79 (198)
T 1qm9_A 79 Q 79 (198)
T ss_dssp C
T ss_pred C
Confidence 5
No 200
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.15 E-value=2.3e-11 Score=111.13 Aligned_cols=74 Identities=20% Similarity=0.362 Sum_probs=63.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcC----C-------CeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccC
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKF----G-------TIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISG 356 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~----G-------~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g 356 (461)
..++|||+|||+++|+++|+++|++| | .|.. +...+.+|||||+|.+.++|++|| .+ +..|+|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~----~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLA----VQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEE----EEEETTTTEEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEE----eEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 46899999999999999999999999 4 4443 223457899999999999999999 56 999999
Q ss_pred ceeEEeecccc
Q 012554 357 HRVVVEPKKST 367 (461)
Q Consensus 357 ~~i~V~~a~~~ 367 (461)
+.|+|.++...
T Consensus 78 ~~i~v~~~~~~ 88 (198)
T 2yh0_A 78 QSLKIRRPHDY 88 (198)
T ss_dssp EEEEEECCCCC
T ss_pred ceEEEeCCCCC
Confidence 99999988765
No 201
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=7.8e-10 Score=90.57 Aligned_cols=74 Identities=16% Similarity=0.161 Sum_probs=61.5
Q ss_pred CCEEEEcCCC-------CCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhCCCcccCceeEEe
Q 012554 290 GPSIYLKGLP-------PSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEASPIVISGHRVVVE 362 (461)
Q Consensus 290 ~~~lfV~nLp-------~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~ 362 (461)
.++|-|.-.. .++++++|+++|++||.|..+.|. .+++|||||+|++.++|++||+.+ ..+.++.|+|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~---~~~rGfaFVeF~~~~~A~~Ai~~~-~~~~g~~l~V~ 85 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS---SKKPGTAVVEFATVKAAELAVQNE-VGLVDNPLKIS 85 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE---SSSSSEEEEEESCHHHHHHHHHTC-CBCSSSBCEEE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc---cCCCCEEEEEECCHHHHHHHHHhc-CCCCCCeEEEE
Confidence 5577776544 458999999999999999986553 357899999999999999999984 44679999999
Q ss_pred ecccc
Q 012554 363 PKKST 367 (461)
Q Consensus 363 ~a~~~ 367 (461)
+++++
T Consensus 86 ~a~~~ 90 (100)
T 2d9o_A 86 WLEGQ 90 (100)
T ss_dssp CSSCC
T ss_pred EccCC
Confidence 98875
No 202
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.12 E-value=1.6e-10 Score=108.84 Aligned_cols=77 Identities=18% Similarity=0.220 Sum_probs=67.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCC-CeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCccc-CceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFG-TIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVIS-GHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~-g~~i~V~~a 364 (461)
.+.++|||+|||.++++++|+++|++|| .|..+.| .. +.++||||+|.+.++|.+||+.+ +..|+ |+.|+|.++
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i--~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a 225 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKF--FQ-KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 225 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEE--CS-SSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEE--EE-CCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEe
Confidence 3478999999999999999999999999 9988543 22 25789999999999999999988 99999 999999998
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
+++
T Consensus 226 ~~~ 228 (229)
T 2adc_A 226 KST 228 (229)
T ss_dssp SSC
T ss_pred cCC
Confidence 863
No 203
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.12 E-value=3.6e-11 Score=107.85 Aligned_cols=80 Identities=20% Similarity=0.354 Sum_probs=66.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEE-EEeCcCCccEEEEEEccHHHHHHHHHhCCCcccCceeEEeeccc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGI-QVKTQKGFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEPKKS 366 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v-~~~~~k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~a~~ 366 (461)
.+.++|||+|||.++|+++|+++|.+||.+..+.| .....+++|||||+|.+.++|++||+..+..|+|+.|+|.++.+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~ 90 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKG 90 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCC
Confidence 45799999999999999999999999987654111 22334488999999999999999996339999999999999876
Q ss_pred c
Q 012554 367 T 367 (461)
Q Consensus 367 ~ 367 (461)
+
T Consensus 91 ~ 91 (175)
T 1fje_B 91 R 91 (175)
T ss_dssp S
T ss_pred c
Confidence 5
No 204
>1of5_B MTR2, YKL186C, mRNA transport regulator MTR2; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2
Probab=99.12 E-value=3.8e-10 Score=98.93 Aligned_cols=101 Identities=16% Similarity=0.102 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHHHHHHHccCc-----hhhhccccCCceeeccCCCCcccccccHHHHHHHHH-hCCCCcceEEEEEeeee
Q 012554 10 TADIVANAFVHQYYLILHQSP-----QLVHRFYQDISKLGRPEENGAMSITTTMQAINDKIL-ALHYGEFSAEITTVDAQ 83 (461)
Q Consensus 10 ~~~~vg~~Fv~~YY~~l~~~p-----~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~-~l~~~~~~~~I~~~d~q 83 (461)
.-.+.+..||+.||..|+..+ ..|..|+...+.++++|. .+-+..+..+.+. .++.. +|+|+++|||
T Consensus 14 ~~~~aae~FVk~~y~aLd~~r~~~l~~~lssF~p~~~~Ii~NG~-----p~a~p~~fqeiw~~Q~p~T--~hel~S~D~H 86 (184)
T 1of5_B 14 NQAQITATFTKKILAHLDDPDSNKLAQFVQLFNPNNCRIIFNAT-----PFAQATVFLQMWQNQVVQT--QHALTGVDYH 86 (184)
T ss_dssp CHHHHHHHHHHHHHHHHHCCCCC-CHHHHTTBCSS-CCEEETTE-----EESCHHHHHHHHHHHSCCC--EEEEEEEEEE
T ss_pred cchhHHHHHHHHHHHHhcccccchhhhhhhhcCCCCceEEECCe-----EcCCHHHHHHHHHhcCCCc--eEEEEeEEEE
Confidence 446789999999999999988 889999887789999986 7777778888888 88866 9999999999
Q ss_pred eeCC-CcEEEEEEEEEEcCCCCcceeEEEEEEEEe
Q 012554 84 ESYN-GGVIVLVTGYLTGKDSVRRKFSQSFFLAPQ 117 (461)
Q Consensus 84 ~s~~-~~ilv~V~G~~~~~~~~~~~F~q~F~L~~~ 117 (461)
-+.. ++|||+|+|.|.+++...-+|.|+|+|.+.
T Consensus 87 VIngsgsivv~VsgkVRFdEsgrd~fgEtfvLvpn 121 (184)
T 1of5_B 87 AIPGSGTLICNVNCKVRFDESGRDKMGQDATVPIQ 121 (184)
T ss_dssp EETTTTEEEEEEEEEEECC----------------
T ss_pred EECCCCeEEEEEEEEEEECCCCCCCCCCeEEECCC
Confidence 9864 579999999999976555699999999976
No 205
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.11 E-value=1.4e-10 Score=111.53 Aligned_cols=76 Identities=14% Similarity=0.266 Sum_probs=68.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeeccc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKS 366 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~ 366 (461)
.+.++|||+|||+++|+++|+++|++||.|..+.| .+.+|||||+|.+.++|.+||..+ +..|+|+.|+|.++.+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i----~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFI----NRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE----eCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 45789999999999999999999999999998544 235799999999999999999977 9999999999999876
Q ss_pred c
Q 012554 367 T 367 (461)
Q Consensus 367 ~ 367 (461)
.
T Consensus 96 ~ 96 (261)
T 3sde_A 96 G 96 (261)
T ss_dssp S
T ss_pred C
Confidence 4
No 206
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.11 E-value=8.2e-11 Score=114.64 Aligned_cols=79 Identities=22% Similarity=0.406 Sum_probs=69.6
Q ss_pred CCCCEEEEcCCCCC-CCHHHHHHHHhcCCCeeEeEEEEeC---cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEe
Q 012554 288 AEGPSIYLKGLPPS-ATHALLENEFRKFGTIRAGGIQVKT---QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVE 362 (461)
Q Consensus 288 ~~~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~~~v~~~~---~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~ 362 (461)
...++|||+|||++ +|+++|+++|++||.|..+.|..+. .+++|||||+|.+.++|.+|| .+ +..|+|+.|+|.
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~ 286 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVS 286 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEE
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEE
Confidence 45789999999999 9999999999999999986554443 347899999999999999999 77 999999999999
Q ss_pred ecccc
Q 012554 363 PKKST 367 (461)
Q Consensus 363 ~a~~~ 367 (461)
+++++
T Consensus 287 ~a~~k 291 (292)
T 2ghp_A 287 LADKK 291 (292)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99874
No 207
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.11 E-value=1.5e-10 Score=112.70 Aligned_cols=80 Identities=21% Similarity=0.313 Sum_probs=68.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhCCCcccCceeEEeecccc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEPKKST 367 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~a~~~ 367 (461)
...++|||+|||+++|+++|+++|+.||.|..|.|..+...++|||||+|.+.++|++||+..+..|+|+.|.|.++...
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~~~ 118 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLTEC 118 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEECCSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEECCCC
Confidence 56899999999999999999999999999999777665555789999999999999999963399999999999987654
No 208
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.11 E-value=1.3e-10 Score=106.47 Aligned_cols=77 Identities=18% Similarity=0.217 Sum_probs=67.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCC-CeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCccc-CceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFG-TIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVIS-GHRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~-g~~i~V~~a 364 (461)
.+.++|||+|||.++++++|+++|++|| .|..+. +.. +.+|||||+|.+.++|.+||..+ +..|+ |+.|+|.++
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~--i~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 194 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFK--FFQ-KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 194 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEE--ESS-TTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEE--EEe-CCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEee
Confidence 3478999999999999999999999999 998843 322 24789999999999999999988 99999 999999998
Q ss_pred ccc
Q 012554 365 KST 367 (461)
Q Consensus 365 ~~~ 367 (461)
+++
T Consensus 195 ~~~ 197 (198)
T 1qm9_A 195 KST 197 (198)
T ss_dssp CCC
T ss_pred ccc
Confidence 763
No 209
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.10 E-value=1.4e-10 Score=112.42 Aligned_cols=79 Identities=13% Similarity=0.157 Sum_probs=70.8
Q ss_pred CCCEEEEcCCCCCC-CHHHHHHHHhcCCCeeEeEEEEeCcC-CccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecc
Q 012554 289 EGPSIYLKGLPPSA-THALLENEFRKFGTIRAGGIQVKTQK-GFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKK 365 (461)
Q Consensus 289 ~~~~lfV~nLp~~~-te~~L~~~F~~~G~i~~~~v~~~~~k-~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~ 365 (461)
..++|||+|||+++ |+++|+++|++||.|..+.|..+... ++|||||+|.+.++|.+||..+ +..|+|+.|+|.++.
T Consensus 183 ~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 262 (284)
T 3smz_A 183 HSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCA 262 (284)
T ss_dssp SCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEec
Confidence 46899999999995 99999999999999999776554333 6899999999999999999988 999999999999998
Q ss_pred cc
Q 012554 366 ST 367 (461)
Q Consensus 366 ~~ 367 (461)
++
T Consensus 263 ~~ 264 (284)
T 3smz_A 263 PG 264 (284)
T ss_dssp SS
T ss_pred CC
Confidence 76
No 210
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.10 E-value=1.5e-10 Score=103.29 Aligned_cols=74 Identities=19% Similarity=0.341 Sum_probs=63.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcC----C-------CeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccC
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKF----G-------TIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISG 356 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~----G-------~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g 356 (461)
+.++|||+|||.++|+++|+++|++| | .|..+ ...+.+|||||+|.+.++|++|| .+ +..|+|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~----~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g 77 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAV----QINQDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEE----EEETTTTEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeee----EecCCCCEEEEEeCCHHHHHHHH-HhCCcEecC
Confidence 46899999999999999999999999 6 55542 22346899999999999999999 56 999999
Q ss_pred ceeEEeecccc
Q 012554 357 HRVVVEPKKST 367 (461)
Q Consensus 357 ~~i~V~~a~~~ 367 (461)
+.|+|.++...
T Consensus 78 ~~i~v~~~~~~ 88 (172)
T 2g4b_A 78 QSLKIRRPHDY 88 (172)
T ss_dssp EECEEECCSSC
T ss_pred ceeeecCCccc
Confidence 99999987654
No 211
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.09 E-value=8.9e-11 Score=109.02 Aligned_cols=70 Identities=7% Similarity=0.059 Sum_probs=59.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCe--eEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCc
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTI--RAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGH 357 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i--~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~ 357 (461)
.+.++|||+|||+++|+++|+++|++||.| ..+.|..+..+.+|||||+|.+.++|.+||..+ +..|+|+
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 346899999999999999999999999998 664332222235699999999999999999998 8889877
No 212
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.07 E-value=3.8e-10 Score=109.44 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=70.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeC--cCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeeccc
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKT--QKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKS 366 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~--~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~ 366 (461)
.++|||+|||+++|+++|+++|++||.|..+.|..+. .+++|||||+|.+.++|.+|+..+ +..|+|+.|+|.++.+
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~ 174 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDA 174 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCG
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 4799999999999999999999999999997765543 237899999999999999999877 9999999999999887
Q ss_pred c
Q 012554 367 T 367 (461)
Q Consensus 367 ~ 367 (461)
+
T Consensus 175 ~ 175 (284)
T 3smz_A 175 G 175 (284)
T ss_dssp G
T ss_pred C
Confidence 6
No 213
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.01 E-value=9.3e-10 Score=105.75 Aligned_cols=78 Identities=28% Similarity=0.509 Sum_probs=67.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCc-CCccEEEEEEccHHHHHHHHHhC--CCccc---CceeEEee
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQ-KGFCFGFVEFEEENAVQSAIEAS--PIVIS---GHRVVVEP 363 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~-k~~g~aFVeF~~~~~a~~Al~~~--~~~i~---g~~i~V~~ 363 (461)
..+|||+|||..+|+++|+++|++||.|..+.|..+.. +++|||||+|.+.++|.+||..+ +..+. ++.|.|.+
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~ 175 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEP 175 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEE
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEee
Confidence 57999999999999999999999999999987766633 37899999999999999999998 43343 89999999
Q ss_pred cccc
Q 012554 364 KKST 367 (461)
Q Consensus 364 a~~~ 367 (461)
+...
T Consensus 176 ~~~~ 179 (261)
T 3sde_A 176 MEQF 179 (261)
T ss_dssp CCCE
T ss_pred cccc
Confidence 8765
No 214
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.97 E-value=8.3e-10 Score=91.29 Aligned_cols=79 Identities=19% Similarity=0.194 Sum_probs=64.9
Q ss_pred CCCEEEEcCC--CCCCC--------HHHHHHHHhcCCCeeEeEEEEeCc----CCccEEEEEEccHHHHHHHHHhC-CCc
Q 012554 289 EGPSIYLKGL--PPSAT--------HALLENEFRKFGTIRAGGIQVKTQ----KGFCFGFVEFEEENAVQSAIEAS-PIV 353 (461)
Q Consensus 289 ~~~~lfV~nL--p~~~t--------e~~L~~~F~~~G~i~~~~v~~~~~----k~~g~aFVeF~~~~~a~~Al~~~-~~~ 353 (461)
+++.|.|.|+ +.++. +++|+++|++||.|..+.|..+.. +++||+||+|.+.++|.+|++.| +..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4678999998 33333 368999999999999965544332 36899999999999999999999 999
Q ss_pred ccCceeEEeecccc
Q 012554 354 ISGHRVVVEPKKST 367 (461)
Q Consensus 354 i~g~~i~V~~a~~~ 367 (461)
++||.|+|.+....
T Consensus 84 f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FANRVVVTKYCDPD 97 (105)
T ss_dssp ETTEECEEEEECHH
T ss_pred eCCCEEEEEEeCHH
Confidence 99999999987654
No 215
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.95 E-value=2.1e-09 Score=90.72 Aligned_cols=79 Identities=24% Similarity=0.264 Sum_probs=66.6
Q ss_pred CCCEEEEcCCCC--C---CCHHHHHHHHhcCCCeeEeEEEEeCc------CCccEEEEEEccHHHHHHHHHhC-CCcccC
Q 012554 289 EGPSIYLKGLPP--S---ATHALLENEFRKFGTIRAGGIQVKTQ------KGFCFGFVEFEEENAVQSAIEAS-PIVISG 356 (461)
Q Consensus 289 ~~~~lfV~nLp~--~---~te~~L~~~F~~~G~i~~~~v~~~~~------k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g 356 (461)
+++.|+|+|+-. + --+++|+++|++||.|..+.|..+.. +++||+||+|.+.++|.+|++.| +..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 578999999932 2 23689999999999999987766533 25799999999999999999999 999999
Q ss_pred ceeEEeecccc
Q 012554 357 HRVVVEPKKST 367 (461)
Q Consensus 357 ~~i~V~~a~~~ 367 (461)
|.|+|.+....
T Consensus 99 R~i~v~~~~~~ 109 (118)
T 3ue2_A 99 RKVVAEVYDQE 109 (118)
T ss_dssp EECEEEEECHH
T ss_pred cEEEEEEcChH
Confidence 99999987654
No 216
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.94 E-value=2.4e-10 Score=94.34 Aligned_cols=70 Identities=14% Similarity=0.240 Sum_probs=56.5
Q ss_pred EcCCCCCCCHHHHHHHH------------hcCCCeeEeEEEEeCc-CCccEEEEEEccHHHHHHHHHhC-CCcccCceeE
Q 012554 295 LKGLPPSATHALLENEF------------RKFGTIRAGGIQVKTQ-KGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVV 360 (461)
Q Consensus 295 V~nLp~~~te~~L~~~F------------~~~G~i~~~~v~~~~~-k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~ 360 (461)
+.||++.+++++|+++| ++||.|..+.|..+.. +++|||||+|.+.++|++|+..+ +..++||.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45666667777776666 9999999976643322 37999999999999999999988 9999999999
Q ss_pred Eeec
Q 012554 361 VEPK 364 (461)
Q Consensus 361 V~~a 364 (461)
|+++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9875
No 217
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.88 E-value=4.5e-09 Score=104.60 Aligned_cols=74 Identities=12% Similarity=0.125 Sum_probs=61.0
Q ss_pred CCCCCEEEEcC--CCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCccc---Cc--e
Q 012554 287 EAEGPSIYLKG--LPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVIS---GH--R 358 (461)
Q Consensus 287 ~~~~~~lfV~n--Lp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~---g~--~ 358 (461)
..+..+|||+| |++.+|+++|+++|++||.|+.+ .+.. +||||||+|.+.++|++||+.+ +..+. |+ .
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v--~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDAL--LMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEE--ECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEE--EEeC--CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 35688999999 57899999999999999999873 3333 6799999999999999999999 77763 44 4
Q ss_pred eEEeec
Q 012554 359 VVVEPK 364 (461)
Q Consensus 359 i~V~~a 364 (461)
|.|.+.
T Consensus 91 ly~~~~ 96 (345)
T 3tht_A 91 LYLNFV 96 (345)
T ss_dssp CEEEEC
T ss_pred EEEEEe
Confidence 666655
No 218
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.80 E-value=1.3e-08 Score=85.24 Aligned_cols=77 Identities=13% Similarity=0.039 Sum_probs=62.8
Q ss_pred CCCEEEEcCCCC--CC--------CHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCc
Q 012554 289 EGPSIYLKGLPP--SA--------THALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGH 357 (461)
Q Consensus 289 ~~~~lfV~nLp~--~~--------te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~ 357 (461)
+++.|.+.|+=. +. .+++|+++|++||.|..+ .+..+..+||+||+|.+.++|++|++.| +..++||
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v--~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHI--YVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEE--EECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEE--EEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 366788888832 21 125789999999999985 4455557899999999999999999998 9999999
Q ss_pred eeEEeecccc
Q 012554 358 RVVVEPKKST 367 (461)
Q Consensus 358 ~i~V~~a~~~ 367 (461)
.|+|++....
T Consensus 84 ~i~v~~~~~~ 93 (114)
T 3s6e_A 84 MITAAYVPLP 93 (114)
T ss_dssp ECEEEEECHH
T ss_pred EEEEEEEcHH
Confidence 9999998654
No 219
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.76 E-value=2.7e-08 Score=83.88 Aligned_cols=75 Identities=17% Similarity=0.162 Sum_probs=63.8
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEcc-HHHHHHHHHhC---CCcccCceeEE
Q 012554 287 EAEGPSIYLKGLPPS-ATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEE-ENAVQSAIEAS---PIVISGHRVVV 361 (461)
Q Consensus 287 ~~~~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~-~~~a~~Al~~~---~~~i~g~~i~V 361 (461)
-..++.|||+||+.+ ++.++|+++|++||.|..|++ .. ....|||.|.+ ..+|..|++.+ +.+|++..+++
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~--~~--g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ 90 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDF--VR--GAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTW 90 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEEC--CT--TCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEE--ec--CCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEE
Confidence 367999999999999 999999999999999998544 22 33479999999 78999999987 88899998888
Q ss_pred eecc
Q 012554 362 EPKK 365 (461)
Q Consensus 362 ~~a~ 365 (461)
+...
T Consensus 91 evL~ 94 (121)
T 1owx_A 91 EVLE 94 (121)
T ss_dssp EECC
T ss_pred EECC
Confidence 7543
No 220
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.62 E-value=8.8e-08 Score=75.98 Aligned_cols=74 Identities=12% Similarity=0.165 Sum_probs=59.1
Q ss_pred CCCCEEEEcCCCC----CCCH----HHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhCCCcccCcee
Q 012554 288 AEGPSIYLKGLPP----SATH----ALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEASPIVISGHRV 359 (461)
Q Consensus 288 ~~~~~lfV~nLp~----~~te----~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i 359 (461)
++..+|+|..++. +.-+ .+|.+.|.+||.|..+ ++..+ .+||+|.+.++|.+||+..+..|+||.|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~v--r~~~d----~~fVtF~d~~sAlaAi~mnG~~v~Gr~L 78 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILI--RFVED----KMWVTFLEGSSALNVLSLNGKELLNRTI 78 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEE--EECSS----SEEEEESSHHHHHHGGGGTTCEETTEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEE--EEecC----CEEEEECChHHHHHHHhcCCeEeCCeEE
Confidence 4577899987762 2333 5789999999998874 44443 2899999999999999944999999999
Q ss_pred EEeecccc
Q 012554 360 VVEPKKST 367 (461)
Q Consensus 360 ~V~~a~~~ 367 (461)
+|..+++.
T Consensus 79 kV~lkt~d 86 (91)
T 2dnr_A 79 TIALKSPS 86 (91)
T ss_dssp EEEECCCS
T ss_pred EEEeCCCC
Confidence 99999876
No 221
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.35 E-value=4.1e-07 Score=72.52 Aligned_cols=73 Identities=15% Similarity=0.297 Sum_probs=58.2
Q ss_pred CCCCEEEEcCCCCC-----CCH----HHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhCCCcccCce
Q 012554 288 AEGPSIYLKGLPPS-----ATH----ALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEASPIVISGHR 358 (461)
Q Consensus 288 ~~~~~lfV~nLp~~-----~te----~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~ 358 (461)
++..+|+|..++.. .-+ .+|.+.|.+||.|.. +++..++ +||+|.+.++|.+||+..+..|+||.
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vil--vr~v~d~----~fVtF~d~~sAl~AI~ldG~~v~Gr~ 86 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVL--VRINQGQ----MLVTFADSHSALSVLDVDGMKVKGRA 86 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSE--EEEETTE----EEEECSCSHHHHHHHHGGGSEETTEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEE--EEEecCc----EEEEEcChHHHHHHHhcCCeeeCCeE
Confidence 66889999988632 222 468899999998887 4444443 89999999999999993399999999
Q ss_pred eEEeeccc
Q 012554 359 VVVEPKKS 366 (461)
Q Consensus 359 i~V~~a~~ 366 (461)
|+|..+.+
T Consensus 87 L~V~~k~~ 94 (95)
T 1ufw_A 87 VKISGPSS 94 (95)
T ss_dssp EEEECCCC
T ss_pred EEEeccCC
Confidence 99998754
No 222
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.06 E-value=6.8e-06 Score=76.52 Aligned_cols=65 Identities=26% Similarity=0.258 Sum_probs=55.8
Q ss_pred CHHHHHHHHhcCCCeeEeEEEEeCc------CCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecccc
Q 012554 303 THALLENEFRKFGTIRAGGIQVKTQ------KGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKKST 367 (461)
Q Consensus 303 te~~L~~~F~~~G~i~~~~v~~~~~------k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~~~ 367 (461)
.+++|++.|++||.|..+.|..... +++|++||+|.+.++|.+|+..+ +..++||.|.+......
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~ 213 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQE 213 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHH
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHH
Confidence 5688999999999999976644322 36899999999999999999999 99999999999987643
No 223
>4i4k_A Uncharacterized protein SGCJ; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: CIT PG4 1PE; 1.70A {Streptomyces globisporus}
Probab=97.76 E-value=0.00033 Score=60.41 Aligned_cols=106 Identities=11% Similarity=0.113 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC---CCCcceEEEEEeeeeeeCCCcE
Q 012554 15 ANAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL---HYGEFSAEITTVDAQESYNGGV 90 (461)
Q Consensus 15 g~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l---~~~~~~~~I~~~d~q~s~~~~i 90 (461)
-..++..|+..|+ .+.+.|..+|.++..+...|. ...|.++|.+.+..+ .+.+..+.+...+.....++..
T Consensus 21 i~~l~~~y~~A~~~~D~d~~~~lf~~Da~~~~~g~-----~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~A 95 (143)
T 4i4k_A 21 VAALPARIVAAWADHDADRFADVFAEDGTMILPGL-----FRKGRENIRTHMAAAFAGPYKGTRVIGSPIDARLLGDGIA 95 (143)
T ss_dssp HHTHHHHHHHHHHTTCHHHHHTTEEEEEEEEETTE-----EEESHHHHHHHHHHHHHTTTTTCEEEEEEEEEEEEETTEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHhhcCceEEeCCC-----eecCHHHHHHHHHHHHhhcCCCCeEEeeeEEEEEcCCCEE
Confidence 3568899999998 789999999999999876553 689999999988754 3355566666666655445555
Q ss_pred EEEEEEEEEcCCCC----cceeEEEEEEEEeCCeEEEEc
Q 012554 91 IVLVTGYLTGKDSV----RRKFSQSFFLAPQDKGYFVLN 125 (461)
Q Consensus 91 lv~V~G~~~~~~~~----~~~F~q~F~L~~~~~~y~v~n 125 (461)
++...+.+...+.. .+.+.+|++|...+++|.|..
T Consensus 96 ~v~~~~~~~~~g~~~~~~~~~~~~T~v~~r~~g~WrI~~ 134 (143)
T 4i4k_A 96 LLITEGGILAPGETEASGDGAVRASWLAVEQDGQWRLAA 134 (143)
T ss_dssp EEEEEEEEECTTCSSCCGGGEEEEEEEEEEETTEEEEEE
T ss_pred EEEeccceecCCCCCCCcccceEEEEEEEEECCcEEEEE
Confidence 55556666555432 377899999999999999876
No 224
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.00011 Score=59.71 Aligned_cols=72 Identities=13% Similarity=0.069 Sum_probs=60.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcC-----CCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEE
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKF-----GTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVV 361 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~-----G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V 361 (461)
...++|=+-|||..+++..|+.++..+ |.|+. |.+..+. +-|+|+|.|...|-+|.-.+ +.+|.|+.|+|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~K--I~L~pDH--~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRK--ILLVSDF--NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSE--EEEETTT--TEEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeE--EEEecCC--CceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 346788899999999999999999999 99987 5566542 34999999999988887666 99999999998
Q ss_pred ee
Q 012554 362 EP 363 (461)
Q Consensus 362 ~~ 363 (461)
.-
T Consensus 95 gT 96 (117)
T 2l9w_A 95 GT 96 (117)
T ss_dssp EC
T ss_pred cC
Confidence 64
No 225
>3gzr_A Uncharacterized protein with A NTF2-like fold; structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: MSE GOL; 1.40A {Caulobacter vibrioides}
Probab=97.35 E-value=0.0045 Score=53.48 Aligned_cols=114 Identities=11% Similarity=0.119 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHc-cCchhhhccccCCceee-ccCCCCcccccccHHHHHHHHHhC---CCCcceEEEEEeeeeeeCCCcE
Q 012554 16 NAFVHQYYLILH-QSPQLVHRFYQDISKLG-RPEENGAMSITTTMQAINDKILAL---HYGEFSAEITTVDAQESYNGGV 90 (461)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~-~~~~~~~~~~~~g~~~I~~~~~~l---~~~~~~~~I~~~d~q~s~~~~i 90 (461)
..++..|...++ .+.+.|..+|.++..+. ..|. ...|.++|.+.+..+ .+.+..+.+...+.....++..
T Consensus 9 ~~l~~~~~~A~~~~D~d~~~~lf~~Da~~~~~~G~-----~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~A 83 (146)
T 3gzr_A 9 QALIQAYFTAWNTNAPERFAEIFWPDGSWVNVVGM-----HWRGRDQIVFAHTAFLKTIFKDCKQELVTIEARTIAPGSA 83 (146)
T ss_dssp HHHHHHHHHHHHTTCGGGSGGGEEEEEEEECTTCC-----EEESHHHHHHHHHHHHHTTTTTCCEEEEEEEEEEEETTEE
T ss_pred HHHHHHHHHHHHcCCHHHHHhhccCCeEEEcCCCC-----eeeCHHHHHHHHHHHhhcccCCCEEEEeEEEEEEcCCCEE
Confidence 577899999998 78999999999999876 5443 789999999987643 3544455555555544445545
Q ss_pred EEEEEEEEE---cCCCCc---ceeEEEEEEEEeCCeEEEEcceEEeecCC
Q 012554 91 IVLVTGYLT---GKDSVR---RKFSQSFFLAPQDKGYFVLNDVFRYVDDA 134 (461)
Q Consensus 91 lv~V~G~~~---~~~~~~---~~F~q~F~L~~~~~~y~v~nd~fr~~~~~ 134 (461)
++.+...|. ..+... ..+.+|++|..++++|.|..+--..++..
T Consensus 84 ~v~~~~~l~g~~~~~G~~~~~~~~~~t~v~vr~dg~WrI~a~h~s~v~p~ 133 (146)
T 3gzr_A 84 LAVVTLIQDAYVTPDGRQMPRAHDRLTLLAVEREGVWRFIHGHNTIVNPD 133 (146)
T ss_dssp EEEEEEEECCEECTTCCEECCEEEEEEEEEEEETTEEEEEEEEEEECCTT
T ss_pred EEEEEEEecceeCCCCCcCCccCcEEEEEEEEECCEEEEEEEecccCcCC
Confidence 555554453 123222 46889999999999999999877766543
No 226
>3cu3_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; 2.00A {Nostoc punctiforme} SCOP: d.17.4.28
Probab=97.27 E-value=0.0026 Score=56.28 Aligned_cols=113 Identities=10% Similarity=-0.064 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHc-cCchhhhccccCCceeec-cCCCCcccccccHHHHHHHHHhC---CCCcceEEEEEeeeeeeCCC
Q 012554 14 VANAFVHQYYLILH-QSPQLVHRFYQDISKLGR-PEENGAMSITTTMQAINDKILAL---HYGEFSAEITTVDAQESYNG 88 (461)
Q Consensus 14 vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~-~~~~~~~~~~~g~~~I~~~~~~l---~~~~~~~~I~~~d~q~s~~~ 88 (461)
--..++..|+..++ .+.+.|..+|.+++.+.. .+. ...|.++|.+.+..+ .+....+.+...+.....++
T Consensus 17 aI~~~~~~~~~A~~~~D~d~~~~lfa~Da~~~~~~g~-----~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d 91 (172)
T 3cu3_A 17 AIRAFHRQMIDAWNRGSGEGFAAPFSETADFITFEGT-----HLKGRKEIAAFHQQAFDTVVKGTRLEGEVDFVRFVNSQ 91 (172)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTCC-----EEEHHHHHHHHHHHHHHTTTTTCEEEEEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHhhcCCCeEEEeCCCC-----eEECHHHHHHHHHHHhhccCCCcEEEEEEeEEEEeCCC
Confidence 34678999999998 789999999999998874 343 789999999998764 24444554444444433345
Q ss_pred cEEEEEEEEEEcCCC----CcceeEEEEEEEEeCCeEEEEcceEEee
Q 012554 89 GVIVLVTGYLTGKDS----VRRKFSQSFFLAPQDKGYFVLNDVFRYV 131 (461)
Q Consensus 89 ~ilv~V~G~~~~~~~----~~~~F~q~F~L~~~~~~y~v~nd~fr~~ 131 (461)
..++.+.+.+...+. ....+..+++|...+++|.|...-...+
T Consensus 92 ~A~v~~~~~~~~~g~~~~~~~~~~~~t~v~~r~dG~WrI~~~~~s~~ 138 (172)
T 3cu3_A 92 LALMLVVIRVILPGQTETSASRDSLPLYVVTKGDEGWQIEGLLNTRK 138 (172)
T ss_dssp EEEEEEEEEEECTTCSSBCGGGCBCCEEEEEEETTEEEEEEEECCBC
T ss_pred EEEEEEEEEEEeCCCCCcCCccceEEEEEEEEeCCeEEEEEEEcCcc
Confidence 455555555665543 2356778888888999999988655443
No 227
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.16 E-value=0.0031 Score=50.76 Aligned_cols=73 Identities=22% Similarity=0.421 Sum_probs=60.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhc-----CCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhCCCcccCceeEEee
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRK-----FGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEASPIVISGHRVVVEP 363 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~-----~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~~~~i~g~~i~V~~ 363 (461)
-..+|.|.|||.++.++.|+-+|++ =|.|.. |.... +-|+|+|.+.+.+++.|+...+.|++..|.|..
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~--v~~~~----~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P 80 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLS--WQRLG----CGGVLTFREPADAERVLAQADHELHGAQLSLRP 80 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEE--EEEET----TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeE--EEEcC----CcEEEEEcChHHHHHHhcCCcceecCeEEEEEc
Confidence 3689999999999999999999976 256665 33332 568999999999999998879999999999987
Q ss_pred cccc
Q 012554 364 KKST 367 (461)
Q Consensus 364 a~~~ 367 (461)
..++
T Consensus 81 ~~~~ 84 (104)
T 2dhx_A 81 APPR 84 (104)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6654
No 228
>3hx8_A MLR2180 protein, putative ketosteroid isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE UNL PG4; 1.45A {Mesorhizobium loti}
Probab=96.98 E-value=0.012 Score=48.57 Aligned_cols=113 Identities=19% Similarity=0.093 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCC-CCcceEEEEEeeeeeeCCCc
Q 012554 12 DIVANAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALH-YGEFSAEITTVDAQESYNGG 89 (461)
Q Consensus 12 ~~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~-~~~~~~~I~~~d~q~s~~~~ 89 (461)
.+.=...+..|+..|+ .+.+.|..+|.++..+...+. ..+.|.++|.+.+..+- .....+.+..++.... ++.
T Consensus 5 ~~~I~~~~~~~~~a~~~~D~~~~~~l~a~Da~~~~~~~----~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~v~~~-gd~ 79 (129)
T 3hx8_A 5 KEAIEAANADFVKAYNSKDAAGVASKYMDDAAAFPPDM----ARVDGRQNIQKLWQGAMDMGISELKLTTLDVQES-GDF 79 (129)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTS----CCEESHHHHHHHHHHHHHTTCEEEEEEEEEEEEE-TTE
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHhhCCCeEEeCCCC----CcccCHHHHHHHHHHHHhCCCceEEEEEEEEEcC-CCE
Confidence 3445678999999998 789999999999999865432 26789999999887541 1113566666665533 333
Q ss_pred EEEEEEEEEEc--CCCCcc--eeEEEEEEEEe-CCeEEEEcceEE
Q 012554 90 VIVLVTGYLTG--KDSVRR--KFSQSFFLAPQ-DKGYFVLNDVFR 129 (461)
Q Consensus 90 ilv~V~G~~~~--~~~~~~--~F~q~F~L~~~-~~~y~v~nd~fr 129 (461)
.++...-.++. .+.... ...-+.++..+ +++|.|..|.|-
T Consensus 80 A~~~~~~~~~~~~~~G~~~~~~g~~~~v~~r~~dG~W~i~~~~~~ 124 (129)
T 3hx8_A 80 AFESGSFSLKAPGKDSKLVDAAGKYVVVWRKGQDGGWKLYRDIWN 124 (129)
T ss_dssp EEEEEEEEEEEECTTSCEEEEEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred EEEEEEEEEEeeCCCCCeeeeeEEEEEEEEECCCCcEEEEEeecc
Confidence 33332222222 233222 23445666778 789999999884
No 229
>3d9r_A Ketosteroid isomerase-like protein; YP_049581.1, structural joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 2.40A {Pectobacterium atrosepticum} SCOP: d.17.4.27
Probab=96.84 E-value=0.017 Score=47.95 Aligned_cols=113 Identities=18% Similarity=0.184 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCC--CC-cceEEEEEeeeeeeCCC
Q 012554 13 IVANAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALH--YG-EFSAEITTVDAQESYNG 88 (461)
Q Consensus 13 ~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~--~~-~~~~~I~~~d~q~s~~~ 88 (461)
.--..++..||..|+ .+.+.|..+|.++.++...+. ....|.++|.+.+..+- +. ++.+.|..+.. ..++
T Consensus 11 ~~i~~~~~~~~~a~~~~D~~~~~~l~a~D~v~~~~~~----~~~~G~~ai~~~~~~~~~~~~~~~~~~~~~i~~--~~gd 84 (135)
T 3d9r_A 11 AVIEAAAIAYLTAFNRADIPAVIATYTDDGVLMGPGR----PAAVGKDELAEVYLSVFETVGFDMAYEIKEVVQ--TSAD 84 (135)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHTEEEEEEEECTTS----CCEESHHHHHHHHHHHHHHEEEEEEEEEEEEEE--EETT
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhcCCCEEEECCCC----CcccCHHHHHHHHHHHHhhcCCceeEEEEEEEE--ecCC
Confidence 345678999999999 788999999999998876543 24579999999888652 21 23444444432 1234
Q ss_pred cEEEEEE--EEEEcC-CCCc--ceeEEEEEEEEe-CCeEEEEcceEEee
Q 012554 89 GVIVLVT--GYLTGK-DSVR--RKFSQSFFLAPQ-DKGYFVLNDVFRYV 131 (461)
Q Consensus 89 ~ilv~V~--G~~~~~-~~~~--~~F~q~F~L~~~-~~~y~v~nd~fr~~ 131 (461)
..++... +.++.. +... ..+.-+++|..+ +++|.|..++|..+
T Consensus 85 ~a~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~dG~W~i~~~~~s~~ 133 (135)
T 3d9r_A 85 WAFVRSATEGTETNKATGVVTPAAYQELFLLRKSATGSWQTARYCTSKI 133 (135)
T ss_dssp EEEEEEEEEEEEEETTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred EEEEEEEEEEEEecCCCCCceeecccEEEEEEecCCCcEEEEEEeeccc
Confidence 3333332 333332 2322 234556777887 88999999999765
No 230
>3b7c_A Uncharacterized protein; NTF-2 like protein, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.70A {Shewanella oneidensis} SCOP: d.17.4.16
Probab=96.40 E-value=0.093 Score=43.21 Aligned_cols=103 Identities=9% Similarity=-0.027 Sum_probs=65.8
Q ss_pred HHHHHHHHHHc-cCchhhhccc--cCCceeeccCCCCcccccccHHHHHHHHHhCCCCc----ceEEEEEeeeeeeCCCc
Q 012554 17 AFVHQYYLILH-QSPQLVHRFY--QDISKLGRPEENGAMSITTTMQAINDKILALHYGE----FSAEITTVDAQESYNGG 89 (461)
Q Consensus 17 ~Fv~~YY~~l~-~~p~~l~~fY--~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~----~~~~I~~~d~q~s~~~~ 89 (461)
.-++.||.-++ .+.+.|..+| .++..+...+. ...|.++|.+.+..+ |.+ ..+.+.-++.+...++.
T Consensus 9 ~~~~~~~~A~~~~D~~~~~~~y~~~~d~~~~~~~~-----~~~G~~~i~~~~~~~-f~~~~~~~~l~~~~~~~~~~~~~~ 82 (122)
T 3b7c_A 9 QLLKGQEEAWNRGDLDAYMQGYWQNEQLMLISNGK-----FRNGWDETLAAYKKN-YPDKESLGELKFTIKEIKMLSNYA 82 (122)
T ss_dssp HHHHHHHHHHHTTCHHHHHTTBCCSTTCEEECSSC-----EEECHHHHHHHHHHH-CSSGGGSCEEEEEEEEEEEEETTE
T ss_pred HHHHHHHHHHHcCCHHHHHHhhcCCCCEEEECCCc-----cccCHHHHHHHHHHh-cCChhhcCeeEEEEEEEEEcCCCE
Confidence 34566666666 8999999999 56655554332 789999999977753 222 45666666666543342
Q ss_pred EEEEEEEEEEcCCCCcceeEEEEEEEEeCCeEEEEcc
Q 012554 90 VIVLVTGYLTGKDSVRRKFSQSFFLAPQDKGYFVLND 126 (461)
Q Consensus 90 ilv~V~G~~~~~~~~~~~F~q~F~L~~~~~~y~v~nd 126 (461)
.+|+....+....... ...-|++|..++++|.|..+
T Consensus 83 a~v~~~~~~~~~~~~~-~~r~T~v~~k~~g~W~Iv~~ 118 (122)
T 3b7c_A 83 AMVVGRWDLKRLKDTP-TGVFTLLVEKIDDRWVITMD 118 (122)
T ss_dssp EEEEEEEEEECSSCCC-EEEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEEEEccCCCC-CcEEEEEEEEeCCCEEEEEE
Confidence 3332233343332222 33578899999999999875
No 231
>3gwr_A Putative calcium/calmodulin-dependent protein KIN II association domain; YP_315894.1; HET: MSE PG4; 2.01A {Thiobacillus denitrificans atcc 25259}
Probab=96.31 E-value=0.04 Score=47.30 Aligned_cols=107 Identities=12% Similarity=0.111 Sum_probs=69.9
Q ss_pred HHHHHHHHHc-cCchhhhccccCCc--eeeccCCCCcccccccHHHHHHHHHhCCCCcc-eEEEEEeeeeeeCC-CcEEE
Q 012554 18 FVHQYYLILH-QSPQLVHRFYQDIS--KLGRPEENGAMSITTTMQAINDKILALHYGEF-SAEITTVDAQESYN-GGVIV 92 (461)
Q Consensus 18 Fv~~YY~~l~-~~p~~l~~fY~~~s--~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~-~~~I~~~d~q~s~~-~~ilv 92 (461)
-...||.-|+ .+.+.|..+|.++. .+.+.+. ....|.++|.+.+..+ |... .+.|...|.+-..+ +..++
T Consensus 13 ~~~af~~A~~~gD~da~~al~a~d~~v~~v~p~g----~~l~G~~ai~~~w~~~-f~~~~~~~i~~~~v~v~~~gd~A~v 87 (144)
T 3gwr_A 13 AEDAFYAAFEARSLDDMMAVWARDDHVACIHPLA----APLNGRAAVAAGWRSM-FGAAGRFRLQVKAVHEIRQADHVIR 87 (144)
T ss_dssp HHHHHHHHHHHTCHHHHHHHBCSSSCCEEECTTC----CCEESHHHHHHHHHHH-HHHHCCEEEEEEEEEEEECSSEEEE
T ss_pred HHHHHHHHHHcCCHHHHHhhccCCCCEEEECCCC----CCcccHHHHHHHHHHH-HcCCCcEEEEEEEEEEEecCCEEEE
Confidence 3667888887 89999999999984 3344442 2688999999987654 2211 34454444443333 33555
Q ss_pred EEEEEEEcC--CCCcceeEEEEEEEEeCCeEEEEcceEE
Q 012554 93 LVTGYLTGK--DSVRRKFSQSFFLAPQDKGYFVLNDVFR 129 (461)
Q Consensus 93 ~V~G~~~~~--~~~~~~F~q~F~L~~~~~~y~v~nd~fr 129 (461)
.+...+... +.....+.-|+++..++++|.|...=--
T Consensus 88 ~~~e~~~~~~~~g~~~~~r~T~V~~r~~g~WrivhhH~S 126 (144)
T 3gwr_A 88 IVDEFLTIGDETAPRPAILATNVYRREADGWRMVLHHAS 126 (144)
T ss_dssp EEEEEEEETTCSSCCCCEEEEEEEEECSSSEEEEEEEEE
T ss_pred EEEEEEEecCCCCceeeEEEEEEEEEECCEEEEEEEecC
Confidence 555566653 2222567888888889999998875443
No 232
>3h51_A Putative calcium/calmodulin dependent protein KIN association domain; NP_636218.1; HET: MSE PG4; 1.70A {Xanthomonas campestris PV}
Probab=96.28 E-value=0.15 Score=43.90 Aligned_cols=116 Identities=15% Similarity=0.154 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCC--CCcceEEEEEeeeeeeC
Q 012554 10 TADIVANAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALH--YGEFSAEITTVDAQESY 86 (461)
Q Consensus 10 ~~~~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~--~~~~~~~I~~~d~q~s~ 86 (461)
+-++| ..++.+|+..|+ .+.+.|..+|.++..+..... + ....|.++|.+.+..+- +..+.+.+..+.. ..
T Consensus 18 d~~~I-~~~~~~~~~A~~~~D~~~l~~l~a~Dav~~~~~~-~--~~~~G~~~i~~~~~~~~~~~~~~~i~~~~i~~--~~ 91 (156)
T 3h51_A 18 EAREV-AALFDTWNAALATGNPHKVADLYAPDGVLLPTVS-N--EVRASREQIENYFEMFLTKKPKGVINYRTVRL--LD 91 (156)
T ss_dssp HHHHH-HHHHHHHHHHHHHTCHHHHHTTEEEEEEEECSSC-S--SCBCSHHHHHHHHHHHGGGCCEEEEEEEEEEE--CS
T ss_pred CHHHH-HHHHHHHHHHHHcCCHHHHHhhcCCCEEEecCCC-C--ccccCHHHHHHHHHHHHhhCCCCcccceEEEE--ec
Confidence 33444 667788888888 899999999999987753211 1 26789999999887651 2222333333332 22
Q ss_pred CCcEEEEEEEEE--Ec--CCCCc--ceeEEEEEEEEeCCeEEEEcceEEeecC
Q 012554 87 NGGVIVLVTGYL--TG--KDSVR--RKFSQSFFLAPQDKGYFVLNDVFRYVDD 133 (461)
Q Consensus 87 ~~~ilv~V~G~~--~~--~~~~~--~~F~q~F~L~~~~~~y~v~nd~fr~~~~ 133 (461)
++..+ |+|.+ .. .+... .....|+++..++++|.|..+-+..+.+
T Consensus 92 gd~A~--~~~~~~~~~~~~~G~~~~~~~r~t~v~~r~dG~WkIv~~H~S~~p~ 142 (156)
T 3h51_A 92 DDSAV--DAGVYTFTLTDKNGKKSDVQARYTFVYEKRDGKWLIINHHSSAMPE 142 (156)
T ss_dssp SSEEE--EEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEECSC
T ss_pred CCeEE--EEEEEEEEEEcCCCCeEEEEeEEEEEEEEECCEEEEEEEeecCCCc
Confidence 33233 34433 22 23322 3346677888889999999888876544
No 233
>2gxf_A Hypothetical protein YYBH; alpha-beta protein., structural genomics, PSI, protein structure initiative; HET: MES; 3.10A {Bacillus subtilis} SCOP: d.17.4.22
Probab=95.81 E-value=0.068 Score=45.22 Aligned_cols=107 Identities=12% Similarity=0.197 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCC--C-CcceEEEEEeeeeeeCCCcEE
Q 012554 16 NAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALH--Y-GEFSAEITTVDAQESYNGGVI 91 (461)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~--~-~~~~~~I~~~d~q~s~~~~il 91 (461)
...+..||..|+ .+.+.|..+|.+++.+.... | ....|.++|.+.+..+- | ....+.+..+...... +..+
T Consensus 6 ~~l~~~~~~A~~~~D~d~~~~lfa~Dav~~~~~--g--~~~~G~~aI~~~~~~~~~~~~~~~~~~~~~~~v~~~g-d~A~ 80 (142)
T 2gxf_A 6 KDIISACDLAIQNEDFDTLMNYYSEDAVLVVKP--G--MIARGKEEIKKAFITIANYFNHHIVPTQGKMILLEAG-DTVL 80 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHTTSEEEEEEEECSS--S--CEEEHHHHHHHHHHHTTSCCCSSCCCEEEEEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHhcCCCEEEEcCC--C--CcccCHHHHHHHHHHHHHhhCCCceEEEEEEEEEEcC-CEEE
Confidence 466889999998 78999999999999885432 2 27899999999998652 1 2234555555555443 3344
Q ss_pred EEEEEEEEc-CCCCc--ceeEEEEEEEEe-CCeEEEEcce
Q 012554 92 VLVTGYLTG-KDSVR--RKFSQSFFLAPQ-DKGYFVLNDV 127 (461)
Q Consensus 92 v~V~G~~~~-~~~~~--~~F~q~F~L~~~-~~~y~v~nd~ 127 (461)
+.+...|.. .+... ....-+++|..+ +++|.|.-|.
T Consensus 81 ~~~~~~~~~~~~G~~~~~~g~~t~v~~r~~dG~Wri~~d~ 120 (142)
T 2gxf_A 81 VLSQTLLDSDKKDSEYAMERRATYVFKKNAQGEWLCVIDN 120 (142)
T ss_dssp EEEEEECCC---------EEEEEEEEEECTTSCEEEEEEE
T ss_pred EEEEEEEEECCCCCeEeeeEEEEEEEEECCCCCEEEEEEC
Confidence 444444432 11211 223347777775 5678887664
No 234
>3f7s_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Pseudomonas putida KT2440}
Probab=95.62 E-value=0.23 Score=41.61 Aligned_cols=112 Identities=7% Similarity=-0.030 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC-C-C-CcceEEEEEeeeeeeCCCc
Q 012554 14 VANAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL-H-Y-GEFSAEITTVDAQESYNGG 89 (461)
Q Consensus 14 vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l-~-~-~~~~~~I~~~d~q~s~~~~ 89 (461)
--..++.+||..|+ .+.+.|..+|.++.++...+.. ....|.++|.+.+... . + ...+++|..+..+...+ .
T Consensus 9 ~I~~l~~~~~~A~~~~D~~~~~~l~a~D~v~~~~~~~---~~~~G~~air~~~~~~~~~~~~~~~~~~~~~~v~~~gd-~ 84 (142)
T 3f7s_A 9 EIRQLIERWMQAVRDRDIPGIIAPYADDIVAFDAIQA---LQFKGKSAYTAHWEMCMGMCTGPMVFELAQLTVHAAGD-L 84 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECSSSS---SCEESHHHHHHHHHHHHHTCCSCEEEEEEEEEEEEETT-E
T ss_pred HHHHHHHHHHHHHHcCCHHHHHhhcCCCEEEecCCCC---ccccCHHHHHHHHHHHHHhCCCceEEEEeeeEEEEcCC-E
Confidence 34667888888887 8899999999999876543321 1456999998876432 1 2 24567777776654433 2
Q ss_pred EEEEEEEEEEcC--CCCcceeEEEEEEEEeCCeEEEEcceEE
Q 012554 90 VIVLVTGYLTGK--DSVRRKFSQSFFLAPQDKGYFVLNDVFR 129 (461)
Q Consensus 90 ilv~V~G~~~~~--~~~~~~F~q~F~L~~~~~~y~v~nd~fr 129 (461)
.++...-.++.. +.....+.-|+++..++++|.|..+=.-
T Consensus 85 A~~~~~~~~~~~~~~g~~~~~r~T~v~~r~~g~W~ivh~H~S 126 (142)
T 3f7s_A 85 ALAHWLNRCGPGDDESQCGFMRATVGYRRQGGQWQVIHEHWS 126 (142)
T ss_dssp EEEEEEEEEEESSCGGGCEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEEEeeecCCCcceeeEEEEEEEEeCCEEEEEEEeec
Confidence 333333233321 2234455668888889999999876553
No 235
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.56 E-value=0.041 Score=43.80 Aligned_cols=55 Identities=24% Similarity=0.324 Sum_probs=44.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC
Q 012554 289 EGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS 350 (461)
Q Consensus 289 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~ 350 (461)
..+-++| ++|.+....||.++|+.||.|. |....+ ..|||.|.+++.|..||..+
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv~---I~WidD---TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ---ISWIDD---TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSCC---CEEEET---TEEEEECSCHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCEE---EEEEcC---CeEEEEecCHHHHHHHHHhc
Confidence 3456666 9999999999999999999765 443333 36999999999999998854
No 236
>2ux0_A Calcium-calmodulin dependent protein kinase (CAM II gamma; transferase, oligomerisation DOM serine- threonine kinase, ATP-binding; 2.46A {Homo sapiens} SCOP: d.17.4.7 PDB: 2w2c_A 1hkx_A*
Probab=95.40 E-value=0.32 Score=40.78 Aligned_cols=111 Identities=9% Similarity=-0.025 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC-C--CCcceEEEEEeeeeeeCCCcEE
Q 012554 16 NAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL-H--YGEFSAEITTVDAQESYNGGVI 91 (461)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l-~--~~~~~~~I~~~d~q~s~~~~il 91 (461)
..++.+||..++ .+.+.|..+|.++.++...+..| ..+.|.+.|...+..+ . ....+++|..+..+...+..++
T Consensus 16 ~~l~~~~~~A~~~~D~~~~~~l~a~d~~~~~~~~~g--~~~~G~~~~r~~~~~~~~~~~~~~~~~~~~~~v~~~gd~aav 93 (143)
T 2ux0_A 16 IKITEQLIEAINNGDFEAYTKICDPGLTSFEPEALG--NLVEGMDFHKFYFENLLSKNSKPIHTTILNPHVHVIGEDAAC 93 (143)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHEEEEEEEECGGGTT--CEEEHHHHHHHHHHHTTTTCCSCEEEEEEEEEEEECSTTEEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHhcCCCcEEEeccCCC--cEEEcHHHHHHHHHhhhhcCCCceeEEEeCCEEEEecCcEEE
Confidence 456777787777 99999999999998775433222 2678999999988765 1 2234556666666655444333
Q ss_pred EEEEEEEE--cC-CCC--cceeEEEEEEEEeCCeEEEEcceEE
Q 012554 92 VLVTGYLT--GK-DSV--RRKFSQSFFLAPQDKGYFVLNDVFR 129 (461)
Q Consensus 92 v~V~G~~~--~~-~~~--~~~F~q~F~L~~~~~~y~v~nd~fr 129 (461)
.....+. .+ +.. ...+.-|+++..++++|.|..+=..
T Consensus 94 -~~~~~~~~~~~~~g~~~~~~~r~T~v~~k~~g~Wkivh~H~S 135 (143)
T 2ux0_A 94 -IAYIRLTQYIDGQGRPRTSQSEETRVWHRRDGKWLNVHYHCS 135 (143)
T ss_dssp -EEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred -EEEeEeeeeecCCCCeeeeeEEEEEEEEEECCEEEEEEEeeC
Confidence 2222222 12 222 2446677888889999999886553
No 237
>3jum_A Phenazine biosynthesis protein A/B; chirality, drug design, medicinal CH inhibitor, biosynthetic protein; HET: AOD; 1.45A {Burkholderia SP} PDB: 3b4o_A* 3b4p_A* 3dzl_A* 3ex9_A 3cnm_A* 3jun_A* 3juo_A* 3jup_A* 3juq_A*
Probab=95.33 E-value=0.087 Score=47.28 Aligned_cols=96 Identities=13% Similarity=0.067 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHccCchhhhccccCCceeeccCC-CCcccccccHHHHHHHHHhCC--CCcceEEEEEeeeeeeCCC-cEE
Q 012554 16 NAFVHQYYLILHQSPQLVHRFYQDISKLGRPEE-NGAMSITTTMQAINDKILALH--YGEFSAEITTVDAQESYNG-GVI 91 (461)
Q Consensus 16 ~~Fv~~YY~~l~~~p~~l~~fY~~~s~l~~~~~-~~~~~~~~g~~~I~~~~~~l~--~~~~~~~I~~~d~q~s~~~-~il 91 (461)
..=|++|+.++.++++.+..||.++.++.+... .|......|+++|.+++..+. |.+ ..+..++...+.++ -|+
T Consensus 44 r~vV~~yl~~~~~D~~~~~eLfAeDav~e~P~~~~G~P~r~~GReai~~~~~~~~~~~~d--~~~~~~~v~~taDpd~Vv 121 (185)
T 3jum_A 44 RKIVEQYMHTRGEARLKRHLLFTEDGVGGLWTTDSGQPIAIRGREKLGEHAVWSLQCFPD--WVWTDIQIFETQDPNWFW 121 (185)
T ss_dssp HHHHHHHHHCCGGGGGGGGGGEEEEEEEEESCCTTSSCEEEESHHHHHHHHHHHHHHSTT--CEEEEEEEECCSSTTEEE
T ss_pred HHHHHHHHHHhccCHHHHHHhCCCCEEEEecCCCCCCCccccCHHHHHHHHHHHHhhCCC--CeeeEEEEEEecCCCEEE
Confidence 456899999999999999999999999877432 244556899999999987652 443 34555666555444 466
Q ss_pred EEEEEEE--EcCCCCcceeEEEEE
Q 012554 92 VLVTGYL--TGKDSVRRKFSQSFF 113 (461)
Q Consensus 92 v~V~G~~--~~~~~~~~~F~q~F~ 113 (461)
+...|.- ...+.+...|.+.|+
T Consensus 122 vE~~~~Gtv~~TGkp~~~Y~~~yi 145 (185)
T 3jum_A 122 VECRGEGAIVFPGYPRGQYRNHFL 145 (185)
T ss_dssp EEEEEEEEECCTTSCCEEEEEEEE
T ss_pred EEEEEEEEEcCCCCccceEEEeEE
Confidence 6555553 333333234666554
No 238
>3rob_A Uncharacterized conserved protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.48A {Planctomyces limnophilus}
Probab=95.31 E-value=0.099 Score=44.54 Aligned_cols=111 Identities=7% Similarity=-0.079 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCCCCcc--eEEEEEeeeeeeCCC
Q 012554 12 DIVANAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALHYGEF--SAEITTVDAQESYNG 88 (461)
Q Consensus 12 ~~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~--~~~I~~~d~q~s~~~ 88 (461)
+.--.+.+..|+.-++ .+.+.|..||.++.++...+. ...|+++|...+... +..+ ...+...+++.+.+-
T Consensus 16 e~aI~~l~~~~~~A~~~gD~~~l~al~a~D~v~~~~g~-----~~~Gr~ai~a~~~~~-~~~~~~~~~~~~~~i~v~GD~ 89 (139)
T 3rob_A 16 ELAIRTVQYRWLEATRKFDRQVLSSLMTDDVVFLTPGR-----LPFGKEEFLAACEQN-DQRVIIEASATFEEIVIVEPM 89 (139)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHTEEEEEEEECTTS-----CCBCHHHHHHHHHHH-HHHEEEEEEEEEEEEEEETTE
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHccCcEEEECCCC-----CccCHHHHHHHHHHH-HHhcCCCCceEEEEEEEcCCe
Confidence 4567888999999988 899999999999999877653 445999999876533 1112 222222333333222
Q ss_pred cEEEEEEE--EEEcC-CCCcc--eeEEEEEEEE-eCCeEEEEcceEE
Q 012554 89 GVIVLVTG--YLTGK-DSVRR--KFSQSFFLAP-QDKGYFVLNDVFR 129 (461)
Q Consensus 89 ~ilv~V~G--~~~~~-~~~~~--~F~q~F~L~~-~~~~y~v~nd~fr 129 (461)
.++...- .++.. +.... ...-+++|.+ .++.|.|..|+--
T Consensus 90 -A~~~~~~~~~~t~~~~g~~~~~~g~~~~v~rK~~dG~W~i~~d~~~ 135 (139)
T 3rob_A 90 -AYTRTHLHIKVTPRSGGAVRELAGHAMSIFRRSMFGEWQLARDANL 135 (139)
T ss_dssp -EEEEEEEEEEEEETTSCCCEEEEEEEEEEEEECTTSCEEEEEEEEC
T ss_pred -EEEEEEEEEEEecCCCCceeEeeccEEEEEEECCCCcEEEEEEhhh
Confidence 2222222 22222 33333 3336668878 4678999988753
No 239
>2rcd_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.32A {Pectobacterium atrosepticum SCRI1043} SCOP: d.17.4.18
Probab=95.17 E-value=0.32 Score=40.26 Aligned_cols=110 Identities=12% Similarity=0.026 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHccCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCCCCcceEEEEEeeeeeeCCCcEE
Q 012554 12 DIVANAFVHQYYLILHQSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALHYGEFSAEITTVDAQESYNGGVI 91 (461)
Q Consensus 12 ~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~I~~~d~q~s~~~~il 91 (461)
.+|-..|.+..--+...+.+.|..+|.++..+...+. + ....|.++|.++-..++-...++.+..+......++..+
T Consensus 14 ~ei~~~~~~y~~A~~~~D~~~l~~lf~~d~~~~~~~~-~--~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~A~ 90 (129)
T 2rcd_A 14 ADVTAAFYRYEKALTGNDVAVLDELFWHDEKTVRYGA-G--ENLYGIEEIRAFRLARPSAGLDRALRNTVITTYGHDMAV 90 (129)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHBCCSTTCEEEET-T--EEEESHHHHHHHHHHSCCTTCCCEEEEEEEEEBTTSEEE
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhccCCCCEEEECC-C--CccCCHHHHHHHHHhcCCCCCceEEEEEEEEEecCcEEE
Confidence 3455555443344444999999999999975533221 1 267899999994444442223444444444444443233
Q ss_pred EEEEEEEEcCCCCcceeEEEEEEEEeCCeEEEEcce
Q 012554 92 VLVTGYLTGKDSVRRKFSQSFFLAPQDKGYFVLNDV 127 (461)
Q Consensus 92 v~V~G~~~~~~~~~~~F~q~F~L~~~~~~y~v~nd~ 127 (461)
++..+..... ...+.+|+++...+++|.|...=
T Consensus 91 --~~~~~~~~~~-~~~g~~t~v~~r~~~gWrIv~~H 123 (129)
T 2rcd_A 91 --ASTEFTRTGS-TKIGRQMQTWVKMPEGWRIVAAH 123 (129)
T ss_dssp --EEEEEECSSC-CSCEEEEEEEEEETTEEEEEEEE
T ss_pred --EEEEEEEcCC-CCceeEEEEEEECCCcEEEEEEe
Confidence 3334444322 24567788999999999998743
No 240
>3duk_A NTF2-like protein of unknown function; structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.20A {Methylobacillus flagellatus KT} SCOP: d.17.4.0
Probab=94.88 E-value=0.48 Score=39.33 Aligned_cols=107 Identities=14% Similarity=0.134 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHh-CCCCcceEEEEEeeeeeeCCCcEEEE
Q 012554 16 NAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILA-LHYGEFSAEITTVDAQESYNGGVIVL 93 (461)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~-l~~~~~~~~I~~~d~q~s~~~~ilv~ 93 (461)
.+-|..|+.-|+ .+.+.|.+.|++++.|.... +|........++..+.+.+ .+..+.+++|.++|.. ++.-++-
T Consensus 15 ~~~l~~y~~g~~~~D~~~l~~~f~pda~~~~~~-~G~~l~~~~~~e~~~~v~~~~p~~~~~~~I~~I~i~---gd~A~a~ 90 (125)
T 3duk_A 15 TEVLNVYMNAAESGTGEEMSAAFHKDATIFGYV-GDKLAFNGPIKDLYDWHNSNGPAKNVQSRITNIDIV---GTVAHAR 90 (125)
T ss_dssp HHHHHHHHHHHHHCCHHHHGGGEEEEEEEEEEE-TTEEEEEEETHHHHHHHHHHCCCTTCEEEEEEEEEE---TTEEEEE
T ss_pred HHHHHHHHHHHHhcCHHHHHHhCCCCcEEEEEc-CCCEEeeCCHHHHHHHHhccCCCCcccceEEEEEEE---CCEEEEE
Confidence 355789999988 88999999999999885422 3321112245565555553 4556678899888874 3433444
Q ss_pred EEEEEEcCCCCcceeEEEEEEEEeCCeEEEEcceEEe
Q 012554 94 VTGYLTGKDSVRRKFSQSFFLAPQDKGYFVLNDVFRY 130 (461)
Q Consensus 94 V~G~~~~~~~~~~~F~q~F~L~~~~~~y~v~nd~fr~ 130 (461)
|.-. .. ....|+-.|.|.+.+++|-|.|=+|++
T Consensus 91 v~~~-~~---~~~~f~D~l~L~k~dg~WkIv~K~~~~ 123 (125)
T 3duk_A 91 VEAE-NW---TNFKFSDLFLLLKLDGKWTIVNKVFHL 123 (125)
T ss_dssp EEEE-CS---SSCCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEE-Ec---CCCeEEEEEEEEEeCCEEEEEEEEEEe
Confidence 3211 12 236899999999999999999999975
No 241
>2owp_A Hypothetical protein BXE_B1374; cystatin-like fold, DUF3225 family protein, structural genom joint center for structural genomics, JCSG; 2.00A {Burkholderia xenovorans} SCOP: d.17.4.18
Probab=94.86 E-value=0.51 Score=39.44 Aligned_cols=111 Identities=12% Similarity=-0.033 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHccCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCCCCcceEEEEEeeeeeeCCCcEE
Q 012554 12 DIVANAFVHQYYLILHQSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALHYGEFSAEITTVDAQESYNGGVI 91 (461)
Q Consensus 12 ~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~I~~~d~q~s~~~~il 91 (461)
.+|-..|.+.|--++.++.+.|-.+|.++..+++.+.. ....|.++|..+...+.-....+.+..+..+...++..+
T Consensus 11 ~eI~~~~~~y~~Al~~~D~~~L~~lf~~d~~~v~~~~g---~~l~G~~~I~a~r~~~~~~~~~~~~~~~~i~~~g~d~A~ 87 (129)
T 2owp_A 11 AQVQAAFVEYERALVENDIEAMNALFWHTPETVRYGIA---EVQHGGEAIRAWRERCEPVPKSRKLHRTVVTTFGTDFAT 87 (129)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHTBCCSTTCEEECSS---CEEESHHHHHHHHHHSCCCCTTCEEEEEEEEEETTTEEE
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHhhccCCCcEEEeCCC---CccCCHHHHHHHHHhcCCCCCceeecccEEEEecCCEEE
Confidence 45666666666666669999999999999864322221 378999999997776642212445555544443333333
Q ss_pred EEEEEEEEcCCCCcceeEEEEEEEEeC--CeEEEEcceE
Q 012554 92 VLVTGYLTGKDSVRRKFSQSFFLAPQD--KGYFVLNDVF 128 (461)
Q Consensus 92 v~V~G~~~~~~~~~~~F~q~F~L~~~~--~~y~v~nd~f 128 (461)
+.+ +....+.. ..+-||.++...+ .+|.|...=.
T Consensus 88 ~~~--~~~~~~~~-~~gr~t~vw~r~~~~~gWrIv~~H~ 123 (129)
T 2owp_A 88 VST--EFTSDATP-LLGRQMQTWARLSPADGWKIVAAHV 123 (129)
T ss_dssp EEE--EEEETTEE-EEEEEEEEEEECSTTTCEEEEEEEE
T ss_pred EEE--EEEECCCC-cceEEEEEEEECCCCCCEEEEEeee
Confidence 332 33333332 3556666666777 8999876543
No 242
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.78 E-value=0.054 Score=43.68 Aligned_cols=74 Identities=12% Similarity=0.045 Sum_probs=57.4
Q ss_pred CCEEEEcCCCCCC-C----HHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEee
Q 012554 290 GPSIYLKGLPPSA-T----HALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEP 363 (461)
Q Consensus 290 ~~~lfV~nLp~~~-t----e~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~ 363 (461)
-++|+|.||+.++ . .+.++++|..|+.+..... + ++..-..|.|.+.++|.+|-..+ +..++|+.|+|-.
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~-l---kSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YF 80 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQY-F---KSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYF 80 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEE-E---TTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEEC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceee-c---CcceEEEEEeCChHHHHHHHHHhccceecCceeEEEe
Confidence 3689999998754 2 2578999999998876322 2 22223589999999999999888 9999999999998
Q ss_pred cccc
Q 012554 364 KKST 367 (461)
Q Consensus 364 a~~~ 367 (461)
+.+.
T Consensus 81 gq~~ 84 (104)
T 1wey_A 81 AQTL 84 (104)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 7653
No 243
>1tp6_A Hypothetical protein PA1314; structural genomics, alpha-beta sandwich, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: d.17.4.12
Probab=94.74 E-value=0.29 Score=40.86 Aligned_cols=106 Identities=8% Similarity=0.062 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHcc--CchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC--CCCcceEEEEEeeeeeeCCCcEE
Q 012554 16 NAFVHQYYLILHQ--SPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL--HYGEFSAEITTVDAQESYNGGVI 91 (461)
Q Consensus 16 ~~Fv~~YY~~l~~--~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~I~~~d~q~s~~~~il 91 (461)
..|++.+++-... +-+.|-..|.++.+|..... ...|.+++.+.+..+ .+.+.++.|..+......++.++
T Consensus 13 ~~~ie~W~~~~~~~~dl~~l~a~~a~d~~mv~p~G-----~~~g~~~~~~~~~~~~g~~pgl~i~i~~l~~~~~~~d~~v 87 (128)
T 1tp6_A 13 HVAIRDWLAGDSRADALDALMARFAEDFSMVTPHG-----VVLDKTALGELFRSKGGTRPGLRIEIDGESLLASGVDGAT 87 (128)
T ss_dssp HHHHHHHHHTCCCTTHHHHHHTTEEEEEEEECTTS-----CEEEHHHHHHHHHHHTTCSTTCEEEEEEEEEEEEETTEEE
T ss_pred HHHHHHHHcCCCcHhHHHHHHHhcCCCEEEECCCC-----eECCHHHHHHHHHHhhCCCCCeEEEEEEEEEEeecCCEEE
Confidence 4455566654444 57789999999999976543 788999999999866 35677888888777666666666
Q ss_pred EEEEEEEEcCCCCcceeEEEEEEEEe-CC--eEEEEcce
Q 012554 92 VLVTGYLTGKDSVRRKFSQSFFLAPQ-DK--GYFVLNDV 127 (461)
Q Consensus 92 v~V~G~~~~~~~~~~~F~q~F~L~~~-~~--~y~v~nd~ 127 (461)
|.-.+.=...+....+++ |.+|..+ ++ .|.++.++
T Consensus 88 v~y~~~~~~~~~~~~rrs-T~v~~~~~~g~~~W~~lHET 125 (128)
T 1tp6_A 88 LAYREIQSDAAGRSERLS-TVVLHRDDEGRLYWRHLQET 125 (128)
T ss_dssp EEEEEEEEETTEEEEEEE-EEEEEECTTCCEEEEEEEEE
T ss_pred EEEEEEeccCCceeEEEE-EEEEEeCCCCCEEEEEEEEE
Confidence 664433233343456677 8888555 55 48888776
No 244
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=94.70 E-value=0.027 Score=44.93 Aligned_cols=52 Identities=23% Similarity=0.339 Sum_probs=41.9
Q ss_pred EEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC
Q 012554 292 SIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS 350 (461)
Q Consensus 292 ~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~ 350 (461)
-++| ++|.+..-.||.++|+.||.|. |....+ ..|||.|.+++.|..||..+
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv~---I~WidD---TsAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNIQ---ISWIDD---TSAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEEE---EEEEET---TEEEEEEEEECHHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCEE---EEEEcC---CeEEEEecCHHHHHHHHHhc
Confidence 3455 9999999999999999999554 444433 36999999999999999854
No 245
>3soy_A NTF2-like superfamily protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Salmonella enterica subsp}
Probab=94.35 E-value=0.31 Score=41.58 Aligned_cols=114 Identities=11% Similarity=0.115 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHccCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCC----CCcceEEEEEee-eeeeC
Q 012554 12 DIVANAFVHQYYLILHQSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALH----YGEFSAEITTVD-AQESY 86 (461)
Q Consensus 12 ~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~----~~~~~~~I~~~d-~q~s~ 86 (461)
.+|-..|-+.|-.+..++.+.|-.+|.++..+++....| ...|.++|.+.+.+-. |....+.|..++ .+...
T Consensus 10 ~ei~~~~~~~~~Al~~~D~~~l~~l~~~~~~~~~i~~~g---~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~v~g 86 (145)
T 3soy_A 10 QEITEGINRYLYSIDKADPTLGKQLFYVSPETSFIHPRG---HERGWSQIAENFYGTTMGKTFSKRTLKLDAPPAIHVYG 86 (145)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHTTTBCCSSSCEEEETTE---EEESHHHHHHHCCCCCCCCTEEEEEEEESSCCEEEEET
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHhCCCCeEEEcCCC---cccCHHHHHHHHHHhhhhccccccceEEeeeeEEEEcC
Confidence 456666666666666699999999998875443332223 5689999988875422 322344455555 34333
Q ss_pred CCcEEEE---EEEEEEcCCCC-cceeEEEEEEEEeC-CeEEEEcceE
Q 012554 87 NGGVIVL---VTGYLTGKDSV-RRKFSQSFFLAPQD-KGYFVLNDVF 128 (461)
Q Consensus 87 ~~~ilv~---V~G~~~~~~~~-~~~F~q~F~L~~~~-~~y~v~nd~f 128 (461)
+-.+++. +.+.+..++.+ ...+..|+++...+ ++|.|+.+=.
T Consensus 87 d~A~v~~~~~~~~~~~~~G~~~~~~~r~T~V~~r~~~ggWkIvh~H~ 133 (145)
T 3soy_A 87 NAAVAEFDWHFTAVRRDNGQTQHTTGRESQVWAKIPNTGWRIVHVHY 133 (145)
T ss_dssp TEEEEEEEEEEEEEETTTCCEEEEEEEEEEEEEEETTTEEEEEEEEE
T ss_pred CEEEEEEEEEEEEEEcCCCCeeeeEEEEEEEEEEcCCCCEEEEEEec
Confidence 3222221 22333223322 23567778888854 8999987543
No 246
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=94.35 E-value=0.13 Score=42.48 Aligned_cols=72 Identities=11% Similarity=0.221 Sum_probs=55.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhCCCcccC-ceeEEeec
Q 012554 288 AEGPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEASPIVISG-HRVVVEPK 364 (461)
Q Consensus 288 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~~~~i~g-~~i~V~~a 364 (461)
...+-|.|-+.+... ...|-..|++||.|.... . .....+-.|.|++..+|++||...+..|++ -.|-|...
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~--~--~~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHV--M--SNTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEE--E--CSSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEec--c--CCCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 346788999998874 566777899999997632 2 224567899999999999999999988875 45566553
No 247
>3bb9_A Putative orphan protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: d.17.4.16
Probab=94.34 E-value=0.19 Score=42.67 Aligned_cols=107 Identities=10% Similarity=0.082 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHH-HHHhC-C-CCcceEEEEEeeeeeeCCCc
Q 012554 14 VANAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAIND-KILAL-H-YGEFSAEITTVDAQESYNGG 89 (461)
Q Consensus 14 vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~-~~~~l-~-~~~~~~~I~~~d~q~s~~~~ 89 (461)
--...+.+||..|+ .+.+.|..+|.++.++...+. ...|+++|.+ .+... . +.+..++|..+...-.. +.
T Consensus 31 ~i~~~~~~~~~A~~~~D~~~l~~l~a~Da~~~~~~g-----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~g-d~ 104 (148)
T 3bb9_A 31 AAGNVVKQFHAALQMGNEAIVRQSLAANVQIYEGGK-----VERSLTEYANHHMLADMAYLKGLTITPKEHQITITG-DI 104 (148)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEETTE-----EECSHHHHHHTHHHHHHHHHHTEEEEEEEEEEEEET-TE
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHhhCCCeEEEeCCC-----ccCCHHHHHHHhHHHHHHhccCceEEeeeEEEEEcC-CE
Confidence 34577889999888 899999999999987765432 3779999988 43321 1 22345666665555443 33
Q ss_pred EEEEEEEEEEcC--CCC-cceeEEEEEE-EEeCCeEEEEcc
Q 012554 90 VIVLVTGYLTGK--DSV-RRKFSQSFFL-APQDKGYFVLND 126 (461)
Q Consensus 90 ilv~V~G~~~~~--~~~-~~~F~q~F~L-~~~~~~y~v~nd 126 (461)
.++...-.+... +.. ...+.-|++| ..++++|.|...
T Consensus 105 A~~~~~~~~~~~~~G~~~~~~~r~T~v~~~k~~g~WkIvh~ 145 (148)
T 3bb9_A 105 AISTSISHAQGEYKGKSIDSMTMETLVLIKQADGRWKITHV 145 (148)
T ss_dssp EEEEEEEEEEECCC--CEEEEEEEEEEEEECTTSCEEEEEE
T ss_pred EEEEEEEEEeeeeCCcccccceEEEEEEeEEcCCcEEEEEE
Confidence 333333333332 221 2356678888 888889998764
No 248
>3dm8_A Uncharacterized protein RPA4348; siras, putative isomerase, structural genomics, PSI-2, prote structure initiative; HET: CE9; 1.80A {Rhodopseudomonas palustris} SCOP: d.17.4.20
Probab=94.21 E-value=0.42 Score=40.31 Aligned_cols=96 Identities=8% Similarity=-0.056 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHc-cCchhhhccccCCceeeccCCCC---cccccccHHHHHHHHHhCC--CCcceEEEEEeeeeeeCCCc
Q 012554 16 NAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENG---AMSITTTMQAINDKILALH--YGEFSAEITTVDAQESYNGG 89 (461)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~---~~~~~~g~~~I~~~~~~l~--~~~~~~~I~~~d~q~s~~~~ 89 (461)
+.||+.||..|+ .+.+.|..+|.++..+...+... ......|.++|.+.+..|. +..++++|..+-+ .++.
T Consensus 7 ~~~v~~~~~a~~~gD~~~l~~l~a~Dv~~~~~g~~~~~p~~g~~~G~~av~~~~~~~~~~~~~~~~~~~~~~~---~gd~ 83 (143)
T 3dm8_A 7 WRFSRALHRALNDRQTEELATIIDDNIDWAIYGPIDMFPFFGARQGKAAVLEVCRQIADSVRIYRYHRESVML---GIDS 83 (143)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHEEEEEEEEEESCTTTCTTCEEEESHHHHHHHHHHHHHHEEEEEEEEEEEEE---CSSE
T ss_pred HHHHHHHHHHHHCCCHHHHHHhcCCCeEEEecCCCCcCCCCccccCHHHHHHHHHHHHHhcCcceEEEEEEEE---cCCe
Confidence 789999999999 67899999999998876554310 0125789999999988763 4555666665432 2444
Q ss_pred EEEEEEEEEEcC-CCCc--ceeEEEEEE
Q 012554 90 VIVLVTGYLTGK-DSVR--RKFSQSFFL 114 (461)
Q Consensus 90 ilv~V~G~~~~~-~~~~--~~F~q~F~L 114 (461)
+++.+....... .... ..|++.|.+
T Consensus 84 v~v~~~~~~~~~~tG~~~~~~~~~~~~v 111 (143)
T 3dm8_A 84 AASMVRYSLTAAGTNRPISVRMALFTQF 111 (143)
T ss_dssp EEEEEEEEEEETTTCCEEEEEEEEEEEE
T ss_pred EEEEEEEEEEEeCCCCEEEEEEEEEEEE
Confidence 544443333222 2222 356666665
No 249
>2rfr_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.16A {Novosphingobium aromaticivorans} SCOP: d.17.4.28
Probab=94.10 E-value=0.34 Score=41.17 Aligned_cols=112 Identities=6% Similarity=0.016 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCccccc-ccHHHHHHHHHhCC-----CCcceEEEEEeeeeeeCC
Q 012554 15 ANAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSIT-TTMQAINDKILALH-----YGEFSAEITTVDAQESYN 87 (461)
Q Consensus 15 g~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~-~g~~~I~~~~~~l~-----~~~~~~~I~~~d~q~s~~ 87 (461)
-..|+..|+..|+ .+.+.|..+|.+++.+.+.+. .. .|.++|.+.+..+. +..+.|.|.++..... +
T Consensus 21 I~~l~~~y~~a~D~~d~~~~~~lf~~Da~~~~~~g-----~~~~G~~~i~~~~~~~~~~~~~~~~~~h~~~~~~i~~~-g 94 (155)
T 2rfr_A 21 IRELIARYGPLADSGDAEALSELWVEDGEYAVVGF-----ATAKGRAAIAALIDGQTHRALMADGCAHFLGPATVTVE-G 94 (155)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEETTS-----CCEESHHHHHHHHHSHHHHHHHHHCEEEEECCCEEEEE-T
T ss_pred HHHHHHHHHHHhcCCCHHHHHhhcCCceEEEcCCC-----ccccCHHHHHHHHHhccccccCCCceeEeCCCeEEEEe-C
Confidence 4578999999998 788999999999999877542 44 89999999888652 2335677765554433 3
Q ss_pred CcEEEEEEEEEE--cCCCCccee---EEEEEEEEeCCeEEEEcceEEeecC
Q 012554 88 GGVIVLVTGYLT--GKDSVRRKF---SQSFFLAPQDKGYFVLNDVFRYVDD 133 (461)
Q Consensus 88 ~~ilv~V~G~~~--~~~~~~~~F---~q~F~L~~~~~~y~v~nd~fr~~~~ 133 (461)
+...+...-.+. ..+. ...+ ..++.|...+++|.|..=.+.++..
T Consensus 95 d~A~~~~~~~~~~~~~~~-~~~~~~g~y~d~~~r~~g~Wri~~r~~~~~~~ 144 (155)
T 2rfr_A 95 DTATARCHSVVFRCVSGT-FGSHRVSANRWTFRRTPAGWRAVRRENALLDG 144 (155)
T ss_dssp TEEEEEEEEEEEEEETTE-EEEEEEEEEEEEEEEETTEEEEEEEEEEESSS
T ss_pred CEEEEEEEEEEEEEcCCC-ceEEEeeeeEEEEEECCCEEEEEEEEEEecCC
Confidence 333333322222 1221 1111 1345777888999999977776543
No 250
>3mg1_A OCP, orange carotenoid protein; carotenoid binding protein, echinone, phycobilisome; HET: ECH; 1.65A {Synechocystis SP} PDB: 3mg2_A* 3mg3_A* 1m98_A*
Probab=94.08 E-value=0.33 Score=46.38 Aligned_cols=110 Identities=18% Similarity=0.158 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCCCCcceEEEEEeeeeeeCCCcEEE
Q 012554 14 VANAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALHYGEFSAEITTVDAQESYNGGVIV 92 (461)
Q Consensus 14 vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~I~~~d~q~s~~~~ilv 92 (461)
|-+.=|.+|++.|| .+-+.+..||.++..|-=+=. ..+.|+++|..++..- .++.+.+...-=+.+.-+++.-|
T Consensus 193 i~~~tVl~Y~e~lNa~Df~a~aaLFA~Dg~LepPf~----~PIvGreAI~~y~~~e-aq~~~l~P~~g~~ep~e~g~~qi 267 (323)
T 3mg1_A 193 VTNATVLNYMDNLNANDFDTLIELFTSDGALQPPFQ----RPIVGKENVLRFFREE-CQNLKLIPERGVTEPAEDGFTQI 267 (323)
T ss_dssp BCCHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTS----CCEESHHHHHHHHHHH-CTTCEEEEEEEEEEECGGGCEEE
T ss_pred cchHHHHHHHHHhcccCHHHHHHHccCCCeeCCCCC----CCccCHHHHHHHHHHH-hccCEEeeccCccccccCCCceE
Confidence 44566899999999 889999999999999965533 3899999999998744 33467787777777888888999
Q ss_pred EEEEEEEcCC---CCcceeEEEEEEEEeCCeEEEEcceE
Q 012554 93 LVTGYLTGKD---SVRRKFSQSFFLAPQDKGYFVLNDVF 128 (461)
Q Consensus 93 ~V~G~~~~~~---~~~~~F~q~F~L~~~~~~y~v~nd~f 128 (461)
.|+|.++..= +....-.=.|.|-++++-|+|.=|.+
T Consensus 268 ~vtGkVqTpwfGv~v~mnVaW~F~lN~~gkI~~v~i~LL 306 (323)
T 3mg1_A 268 KVTGKVQTPWFGGNVGMNIAWRFLLNPEGKIFFVAIDLL 306 (323)
T ss_dssp EEEEEEECTTTGGGCCEEEEEEEEECTTSCEEEEEEEEB
T ss_pred EEEEEEEcccCCccccccceeEEEECCCCcEEEEEehhh
Confidence 9999998642 22346677899988889999987766
No 251
>3fka_A Uncharacterized NTF-2 like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.69A {Silicibacter pomeroyi dss-3}
Probab=94.08 E-value=0.54 Score=38.69 Aligned_cols=103 Identities=13% Similarity=0.152 Sum_probs=70.1
Q ss_pred HHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCC-C--CcceEEEEEeeeeeeCCCcEEE
Q 012554 17 AFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALH-Y--GEFSAEITTVDAQESYNGGVIV 92 (461)
Q Consensus 17 ~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~-~--~~~~~~I~~~d~q~s~~~~ilv 92 (461)
+-|..|+.-++ .+.+.|.+-|++++.|.... +|.. .....++..+ +..-| . .....+|.++|.. ++.-++
T Consensus 13 ~~l~~Y~~g~~~~D~~~l~~~FhpdA~~~~~~-~g~~-~~~~~~~~~~-v~~~p~~~~~~~~~~i~~I~i~---gd~A~a 86 (120)
T 3fka_A 13 ALVETYVMAMTRGDRPALERIFFGKASEVGHY-EGEL-LWNSRDAFIA-MCEDAADAETDPFWAISSVSVQ---GDIAML 86 (120)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHEEEEEEEEEEE-TTEE-EEEEHHHHHH-HHHHHCCSSCCCCEEEEEEEEE---TTEEEE
T ss_pred HHHHHHHHHHHhcCHHHHHhhCCCCeEEEEec-CCcE-EEcCHHHHHh-hcCCccCCCCCceEEEEEEEEE---CCEEEE
Confidence 44889999998 78999999999999885433 2321 2233444444 43222 2 2335678888874 344445
Q ss_pred EEEEEEEcCCCCcceeEEEEEEEEeCCeEEEEcceEEe
Q 012554 93 LVTGYLTGKDSVRRKFSQSFFLAPQDKGYFVLNDVFRY 130 (461)
Q Consensus 93 ~V~G~~~~~~~~~~~F~q~F~L~~~~~~y~v~nd~fr~ 130 (461)
.|. +.. ....|+..|.|.+.+++|-|.|=+|++
T Consensus 87 ~v~--~~~---~~~~f~D~~~L~k~dg~WkIv~K~~~~ 119 (120)
T 3fka_A 87 HVE--NDW---AGMRFDDFLTVLLHEGSWRIVSKVYRI 119 (120)
T ss_dssp EEE--EEE---TTEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEE--EEc---CCCceEEEEEEEEeCCEEEEEEEEEEc
Confidence 555 222 347899999999999999999999976
No 252
>3er7_A Uncharacterized NTF2-like protein; YP_001812677.1, NTF2-like protein of unknown function, struc genomics; HET: MSE; 1.50A {Exiguobacterium sibiricum 255-15} SCOP: d.17.4.24
Probab=94.07 E-value=0.048 Score=46.12 Aligned_cols=59 Identities=5% Similarity=0.048 Sum_probs=44.8
Q ss_pred HHHHHHHHHHcc------CchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC--CCCcceEEEEEe
Q 012554 17 AFVHQYYLILHQ------SPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL--HYGEFSAEITTV 80 (461)
Q Consensus 17 ~Fv~~YY~~l~~------~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~I~~~ 80 (461)
.-|++||.+++. +.+.|..||.+++++...+. ...|.++|.+++..+ .|.++++.+...
T Consensus 6 ~~v~ry~~~~d~~~~d~~d~~~l~~Lfa~Dav~~~~~~-----~~~G~~ai~~F~~~~~~a~~~~~~~~~~~ 72 (131)
T 3er7_A 6 TTLDRYFDLFDASRTDEKAFDDLISLFSDEITFVLNGQ-----EQHGIDAWKQFVRMVFTANQDIKHMYAGW 72 (131)
T ss_dssp CHHHHHHHHHHHTTTCHHHHHHHHHTEEEEEEEEETTE-----EEESHHHHHHHHHHHHHHEEEEEEEECCC
T ss_pred HHHHHHHHHHhhccCCccCHHHHHHHhCCCeEecCCCC-----CcCChHHHHHHHHHHHhhCcCceEEEEEE
Confidence 348999999972 37889999999999933232 678999999999866 356666666553
No 253
>3b8l_A Uncharacterized protein; putative aromatic ring hydroxylase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.75A {Novosphingobium aromaticivorans} SCOP: d.17.4.28
Probab=94.05 E-value=0.47 Score=40.85 Aligned_cols=119 Identities=9% Similarity=0.070 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHcc--CchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC--CCCcceEEEEEeeeeeeCCC
Q 012554 13 IVANAFVHQYYLILHQ--SPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL--HYGEFSAEITTVDAQESYNG 88 (461)
Q Consensus 13 ~vg~~Fv~~YY~~l~~--~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~I~~~d~q~s~~~ 88 (461)
.--..|+..|+..|+. +.+.|..+|.+++.+.+... | .....|.++|.+.+... ++..+.+.|.++......++
T Consensus 28 ~~I~~l~~~y~~alD~~~D~d~~~~lfteDa~~~~~~~-g-~~~~~G~~~i~~~~~~~~~~~~~~~h~~~~~~I~~~~gd 105 (163)
T 3b8l_A 28 LAIQDLMIAYAHAVDTVSDIDAVLDVFTEDAVFDLSGI-G-LTPQVGHAGIREFFTNVFANMSHHAHYLTNFAVTGYEGD 105 (163)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHTTEEEEEEEECGGG-T-CCCEEHHHHHHHHHHHHHHHEEEEEEEEEEEEEEEECSS
T ss_pred HHHHHHHHHHHHHHCcCCCHHHHHhhcCCCEEEEecCC-C-CCCccCHHHHHHHHHHhhccCCceEEEecCEEEEEeCCC
Confidence 3456789999999996 78899999999998876421 1 12578999999888754 33444666766655523334
Q ss_pred cEEEEEEEEE--EcCCCCcc--eeEEEEEEEEeCCeEEEEcceEEeecC
Q 012554 89 GVIVLVTGYL--TGKDSVRR--KFSQSFFLAPQDKGYFVLNDVFRYVDD 133 (461)
Q Consensus 89 ~ilv~V~G~~--~~~~~~~~--~F~q~F~L~~~~~~y~v~nd~fr~~~~ 133 (461)
...+.....+ ...+.... .-.-+++|...+++|.|..-.+.+.-.
T Consensus 106 ~A~~~~~~~~~~~~~~g~~~~~~g~y~d~~~r~dg~WrI~~r~~~~~~~ 154 (163)
T 3b8l_A 106 TASMRAYVIGMGVGKDGRAVTVNGRYFFEVRRTEKGWKATRYTMDFLMP 154 (163)
T ss_dssp EEEEEEEEEEEEEETTSCEEEEEEEEEEEEEEETTEEEEEEEEEEESSC
T ss_pred EEEEEEEEEEEEEcCCCCeEEEEEEEEEEEEEeCCEEEEEEEEEEEEec
Confidence 3333332222 11212211 223456677788999999887776543
No 254
>3cnx_A Uncharacterized protein; putative dehydratase, NTF2-like protein, structural genomics center for structural genomics, JCSG; HET: MSE PGE PG6; 2.10A {Streptomyces avermitilis} SCOP: d.17.4.17
Probab=93.68 E-value=1.1 Score=39.52 Aligned_cols=111 Identities=7% Similarity=0.003 Sum_probs=70.7
Q ss_pred HHHHHHHHHHc-cCchhhhccccCCc-----------------eeeccCCCCcccccccHHHHHHHHHhC--CCCcceEE
Q 012554 17 AFVHQYYLILH-QSPQLVHRFYQDIS-----------------KLGRPEENGAMSITTTMQAINDKILAL--HYGEFSAE 76 (461)
Q Consensus 17 ~Fv~~YY~~l~-~~p~~l~~fY~~~s-----------------~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~ 76 (461)
..+..||..|+ .+.+.|..+|.++. ++.+++. ....|.++|.+.+..+ .....+++
T Consensus 16 ~~~~~~~~A~~~gD~~~l~alwa~d~~~~~~~~~~~~~~~~~v~~v~Pg~----~~l~G~~~I~~~~~~~f~~~~~~~~~ 91 (170)
T 3cnx_A 16 LANTAFYEAMERGDFETLSSLWLTPADLGVDEEYHDPADAGVVSCVHPGW----PVLSGRGEVLRSYALIMANTEYIQFF 91 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHBCCHHHHTC------CCCTTCCEEECTTC----CEEEHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHHHcCCHHHHHHhhcCCcccccccccccccccccEEEEcCCC----ccccCHHHHHHHHHHHHccCCeeEEE
Confidence 45677888777 88999999999884 3345542 2789999999887644 22223555
Q ss_pred EEEeeeeeeCCCcEEEEEEEEEEcC--C-------CCc--ceeEEEEEEEEeCCeEEEEcceEEeec
Q 012554 77 ITTVDAQESYNGGVIVLVTGYLTGK--D-------SVR--RKFSQSFFLAPQDKGYFVLNDVFRYVD 132 (461)
Q Consensus 77 I~~~d~q~s~~~~ilv~V~G~~~~~--~-------~~~--~~F~q~F~L~~~~~~y~v~nd~fr~~~ 132 (461)
+..+....+. +..++++...|... + .+. +++.-|+++...+++|.|...=...+.
T Consensus 92 ~~dv~v~~~g-D~A~v~~~~~~~~~~~~~~g~~~~g~~~~~~~raT~Vfrr~~ggWriv~hH~Sp~~ 157 (170)
T 3cnx_A 92 LTDVHVSVTG-DTALVTCTENILSGGPPPDDSDELGPLVGQLVVATNVFRRTPDGWKLWSHHASPVL 157 (170)
T ss_dssp EEEEEEEEET-TEEEEEEEEEEEEEC---------CCCEEEEEEEEEEEECCTTCCEEEEEEEEECC
T ss_pred EEEEEEEEeC-CEEEEEEEEEEeccCCccccccccCccccceEEEEEEEEEECCEEEEEEEecCCCC
Confidence 5555544343 33555555555531 1 122 236678888889999998886655444
No 255
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.66 E-value=0.035 Score=56.97 Aligned_cols=58 Identities=14% Similarity=0.206 Sum_probs=42.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhCC
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEASP 351 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~~ 351 (461)
.++|||. ++.++++.+|.++|++||.|..+ ....+ ...|+.|||.+.+++++++....
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~--~~~~~-~g~~~~vef~~~~~~~~~~~~~~ 110 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNH--FFYES-FGLYAVVEFCQKESIGSLQNGTH 110 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCE--EEECS-SSEEEEEECC---CCHHHHSSCC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceE--EEEcc-CCeEEEEEeCCHHHHHHHHhccC
Confidence 4799997 78999999999999999999984 34433 34799999999999998876543
No 256
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=93.60 E-value=0.19 Score=39.65 Aligned_cols=63 Identities=11% Similarity=0.260 Sum_probs=47.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcC------CccEEEEEEccHHHHHHHHHhC-CCccc
Q 012554 291 PSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQK------GFCFGFVEFEEENAVQSAIEAS-PIVIS 355 (461)
Q Consensus 291 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k------~~g~aFVeF~~~~~a~~Al~~~-~~~i~ 355 (461)
++|.|++||..+|++++.+.+..+..+.. ......+ ...-|||.|.+.+++..-.+.. ++.+-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~--~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDY--FEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEE--EEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceE--EEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 58999999999999999999998876654 2232222 2356899999999988877776 66553
No 257
>2r4i_A Uncharacterized protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE CIT; 1.60A {Cytophaga hutchinsonii atcc 33406} SCOP: d.17.4.15
Probab=93.42 E-value=0.96 Score=36.32 Aligned_cols=104 Identities=9% Similarity=-0.048 Sum_probs=63.0
Q ss_pred HHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCCCCcceEEEEEeeeeeeCCCcEEEEEE
Q 012554 17 AFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALHYGEFSAEITTVDAQESYNGGVIVLVT 95 (461)
Q Consensus 17 ~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~I~~~d~q~s~~~~ilv~V~ 95 (461)
+..++||+-|. .+.+.|..++.++-.+.+.+ | ...+.+++.+.+.+-...-....+..+..+...+..+++. .
T Consensus 10 ~l~~~~~~A~~~~D~~~l~~l~~~d~~~~~~~--G---~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~g~~a~~~~-~ 83 (123)
T 2r4i_A 10 DCEKKLLTAIQNNDVESLEVLLHDDLLFIIPS--G---ETVTKETDIAAYSSGKIALRAVVPSDYIIRIIHDTVVVSV-N 83 (123)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHEEEEEEEECTT--S---CEECHHHHHHHHHTTCEEEEEEEEEEEEEEEETTEEEEEE-E
T ss_pred HHHHHHHHHHHhCCHHHHHhhhCcCeEEECCC--C---CCccHHHHHHHHhcCCeEEEEEeecccEEEEECCEEEEEE-E
Confidence 34566776655 79999999999986555543 3 4567777666666543222356666777776655444433 2
Q ss_pred EEEE--cCCCC-cceeEEEEEEEEeCCeEEEEcc
Q 012554 96 GYLT--GKDSV-RRKFSQSFFLAPQDKGYFVLND 126 (461)
Q Consensus 96 G~~~--~~~~~-~~~F~q~F~L~~~~~~y~v~nd 126 (461)
-.+. ..+.+ ...+.+|.+....+++|.|...
T Consensus 84 ~~~~~~~~g~~~~~~~r~t~vw~r~~g~W~iv~~ 117 (123)
T 2r4i_A 84 IEIKGEYMEHTLDNTFRYLRVWKLFDGNWKVIAG 117 (123)
T ss_dssp EEEEEEETTEEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEECCcceeEEEEEEEEEEEeCCeEEEEEE
Confidence 3332 23322 2334556677778889988653
No 258
>2chc_A Protein RV3472; hypothetical protein; 1.69A {Mycobacterium tuberculosis} SCOP: d.17.4.25
Probab=93.37 E-value=0.99 Score=39.00 Aligned_cols=112 Identities=11% Similarity=-0.057 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCCC-CcceEEEEEeeeeeeCCCcEE
Q 012554 14 VANAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALHY-GEFSAEITTVDAQESYNGGVI 91 (461)
Q Consensus 14 vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~~-~~~~~~I~~~d~q~s~~~~il 91 (461)
--..++..|+..|+ .+.+.|..+|.+++.+.+.+. ...|.++|.+.+..+-- ..+.|.|.++..... ++...
T Consensus 15 ~I~~l~~~y~~a~D~~D~~~~~~lf~~Da~~~~~g~-----~~~G~~~i~~~~~~~~~~~~~~h~~~~~~i~~~-gd~A~ 88 (170)
T 2chc_A 15 RIQALCARYCLTINTQDGEGWAGCFTEDGAFEFDGW-----VIRGRPALREYADAHARVVRGRHLTTDLLYEVD-GDVAT 88 (170)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHTTEEEEEEEEETTE-----EEESHHHHHHHHHHHHHHCCCCEEEEEEEEEEE-TTEEE
T ss_pred HHHHHHHHHHHHHcCCCHHHHHhcccCcEEEEeCCC-----CcCCHHHHHHHHHHhhcccceEEecCCeEEEEe-CCEEE
Confidence 34578999999999 788999999999999877643 67899999998876411 234666666555433 23232
Q ss_pred EEEEEE--EEcCCCCcc--eeEEEEEEEEeCCeEEEEcceEEee
Q 012554 92 VLVTGY--LTGKDSVRR--KFSQSFFLAPQDKGYFVLNDVFRYV 131 (461)
Q Consensus 92 v~V~G~--~~~~~~~~~--~F~q~F~L~~~~~~y~v~nd~fr~~ 131 (461)
+...-. +...+.... .-.-+.+|...+++|.|..-.+.+.
T Consensus 89 ~~~~~~~~~~~~~g~~~~~~g~y~d~~~r~dg~Wri~~r~~~~~ 132 (170)
T 2chc_A 89 GRSASVVTLATAAGYKILGSGEYQDRLIKQDGQWRIAYRRLRND 132 (170)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred EEEEEEEEEEcCCCCEEEEEEEEEEEEEEECCEEEEEEEEEEEe
Confidence 222221 122222211 1223455667788999999877665
No 259
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.24 E-value=0.11 Score=43.78 Aligned_cols=77 Identities=19% Similarity=0.278 Sum_probs=54.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEe-EEE----------EeCcC-----CccEEEEEEccHHHHHHHHHhCCCc
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKFGTIRAG-GIQ----------VKTQK-----GFCFGFVEFEEENAVQSAIEASPIV 353 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~-~v~----------~~~~k-----~~g~aFVeF~~~~~a~~Al~~~~~~ 353 (461)
..-|.|-+.|.+.+ ..+-+.|++||.|..- .+. ....+ +.++-.|+|++..+|++||..++..
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 45677888877654 4566789999998641 000 00011 2456789999999999999999999
Q ss_pred ccCceeEEeecccc
Q 012554 354 ISGHRVVVEPKKST 367 (461)
Q Consensus 354 i~g~~i~V~~a~~~ 367 (461)
|+|..|-|....+.
T Consensus 86 i~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 86 FNGVLLGVIPYTKD 99 (132)
T ss_dssp ETTEECEEEECCHH
T ss_pred eCcEEEEEEECCHH
Confidence 99998888876544
No 260
>3blz_A NTF2-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.75A {Shewanella baltica} SCOP: d.17.4.14
Probab=93.17 E-value=1.3 Score=36.57 Aligned_cols=109 Identities=11% Similarity=0.104 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC--CCCcceEEEEEeeeeeeCCCcEEE
Q 012554 16 NAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL--HYGEFSAEITTVDAQESYNGGVIV 92 (461)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~I~~~d~q~s~~~~ilv 92 (461)
.+-|..|+.-|+ .+.+.|...|++++.+.....+|.. .....++..+.+... +...+.+.|.+++.. ++.-++
T Consensus 15 ~~~~~~y~~a~~~~D~~~l~~~f~~da~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~i~---gd~A~a 90 (128)
T 3blz_A 15 VEVLSKYNEGGKKADSTIMRPAFSSQATIFGVDVDNKL-TGGPIQGLFDVIDNVFHPSPEAKAAIARIDIV---GTAASA 90 (128)
T ss_dssp HHHHHHHHHHHHHTCHHHHGGGEEEEEEEEEECTTSCE-EEEETHHHHHHHHHTCCCCTTCEEEEEEEEEE---TTEEEE
T ss_pred HHHHHHHHHHHHhCCHHHHHHhhCCCcEEEEEeCCCcE-EecCHHHHHHHHHhcCCCCccccCeEEEEEEE---CCEEEE
Confidence 456889999998 7889999999999988542212221 223455666666554 444456777766653 233334
Q ss_pred EEEEEEEcCCCCcceeEEEEEEEEeCCeEEEEcceEEeec
Q 012554 93 LVTGYLTGKDSVRRKFSQSFFLAPQDKGYFVLNDVFRYVD 132 (461)
Q Consensus 93 ~V~G~~~~~~~~~~~F~q~F~L~~~~~~y~v~nd~fr~~~ 132 (461)
.|... .. ....|...|.|...+++|-|.+-+|....
T Consensus 91 ~~~~~-~~---~~~~~~d~~~l~k~dg~WkI~~~~~~~~~ 126 (128)
T 3blz_A 91 RIDTD-DI---SGFRFTDFFNLLKVEGKWTVVSKIYHTHP 126 (128)
T ss_dssp EEEEE-EE---TTEEEEEEEEEEEETTEEEEEEEEEEECC
T ss_pred EEEEE-Ec---CCCceEEeEEEEEECCEEEEEEEEEEecc
Confidence 44431 12 13568999999999999999999997754
No 261
>3dxo_A Uncharacterized snoal-like protein; putative isomerase of the snoal-like family; HET: MSE PGE; 2.70A {Agrobacterium tumefaciens str} SCOP: d.17.4.19
Probab=92.84 E-value=0.65 Score=38.06 Aligned_cols=64 Identities=16% Similarity=0.194 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHccC-c----hhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC--CCCcceEEEE-Eeeeee
Q 012554 16 NAFVHQYYLILHQS-P----QLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL--HYGEFSAEIT-TVDAQE 84 (461)
Q Consensus 16 ~~Fv~~YY~~l~~~-p----~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~I~-~~d~q~ 84 (461)
..+|++|+..++.. + +.|..+|.++.++..+-. .+.|.++|..+|..+ .|.+|++.+. .++.+.
T Consensus 6 ~~~v~ry~~aw~~~d~~~~~~~l~~l~a~D~~~~dP~~-----~~~G~~ai~~~~~~~~~~~~~~~f~~~~~~~~~~ 77 (121)
T 3dxo_A 6 LTIAQTYLAAWNEEDNERRRHLVGQAWAENTRYVDPLM-----QGEGQQGIAAMIEAARQKFPGYRFVLAGTPDGHG 77 (121)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHEEEEEEEECSSC-----EEEHHHHHHHHHHHHHHHSTTCEEEEEEEEEEET
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhcCCCeEEECCCC-----CcCCHHHHHHHHHHHHHHCCCcEEEEccCcceeC
Confidence 56788888888743 3 469999999999987654 699999999998765 4678899887 667653
No 262
>3h3h_A Uncharacterized snoal-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE UNL MES; 1.60A {Burkholderia thailandensis E264}
Probab=92.76 E-value=0.17 Score=41.45 Aligned_cols=68 Identities=10% Similarity=0.085 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHc-cCchhhhccccCCceeeccCCC---C-cccccccHHHHHHHHHhC--CCCcceEEEEEe
Q 012554 13 IVANAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEEN---G-AMSITTTMQAINDKILAL--HYGEFSAEITTV 80 (461)
Q Consensus 13 ~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~---~-~~~~~~g~~~I~~~~~~l--~~~~~~~~I~~~ 80 (461)
+-...+++.||..++ .+.+.|..+|.++..+..+... | ......|+++|.+.+..+ .|.+++++|..+
T Consensus 8 ~~~~~~~~~~~~a~n~~D~~~l~~l~a~D~v~~~p~~~~~~g~~~~~~~G~~ai~~~~~~~~~~~~~~~~~~~~~ 82 (122)
T 3h3h_A 8 AFAQQFSREWIDAWNAHDLDAILSHYADGFEMSSPMIVQIAGEPSGRLRGKEQVGAYWREALRMIPDLHFEWIAT 82 (122)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECHHHHHHHC-CCCEEEHHHHHHHHHHHHHHHCTTCCCEEEEE
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHhcCCCEEEECCCcccccCCCCCcEEcHHHHHHHHHHHHHHCCCcEEEEEEE
Confidence 335789999999998 7899999999999998654100 0 012789999999998765 355677777654
No 263
>3ff2_A Uncharacterized cystatin fold protein (YP_497570. NTF2 superfamily; structural genomics; 1.90A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=92.76 E-value=0.85 Score=36.72 Aligned_cols=62 Identities=10% Similarity=0.013 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC--CCCcceEEEEEe
Q 012554 16 NAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL--HYGEFSAEITTV 80 (461)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~I~~~ 80 (461)
.+.|+.||..|+ .+.+.|..||.++...-.... .....|.++|.+.+..+ .|.+.+++|..+
T Consensus 5 ~~~v~~~~~a~n~~D~~~~~~~~a~D~v~h~~~~---~~~~~G~~~~~~~~~~~~~~~p~~~~~i~~~ 69 (117)
T 3ff2_A 5 LETAKAMIAAYNAQDVDTYVSYMTDDACEANYRG---DVVREGKEGTRSGLAAAFARWPQNHAEIKDA 69 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTEEEEEEEEETTS---CEEECHHHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred HHHHHHHHHHHcccCHHHHHHhcCCcEEEEeCCC---CccccCHHHHHHHHHHHHhhCCCceEEEEEE
Confidence 367999999998 688999999998876543211 12678999999988755 233556776654
No 264
>3a76_A Gamma-hexachlorocyclohexane dehydrochlorinase; barrel fold, lyase, detoxification; HET: SPD; 2.25A {Sphingomonas paucimobilis}
Probab=92.73 E-value=1 Score=39.50 Aligned_cols=115 Identities=8% Similarity=-0.118 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHH-HhC--CCCcceEEEEEeeeeeeCCCc
Q 012554 14 VANAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKI-LAL--HYGEFSAEITTVDAQESYNGG 89 (461)
Q Consensus 14 vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~-~~l--~~~~~~~~I~~~d~q~s~~~~ 89 (461)
--..|+..|...|+ .+.+.|..+|.+++.+.+.. .| .+.|.++|.+.+ ..+ ++..+.|.|.++.......+.
T Consensus 32 ~I~~ll~ry~~alD~~d~d~~~~lfteDa~~~~~~-~g---~~~G~~~i~~~~~~~~~~~~~~t~H~i~n~~I~~~g~d~ 107 (176)
T 3a76_A 32 AIQDLYSDKLIAVDKRQEGRLASIWWDDAEWTIEG-IG---TYKGPEGALDLANNVLWPMFHECIHYGTNLRLEFVSADK 107 (176)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEEETT-TE---EEEHHHHHHHHHHHTHHHHEEEEEEEEEEEEEEESSSSE
T ss_pred HHHHHHHHHHHHhcCCCHHHHHhhccCCeEEEcCC-Cc---cccCHHHHHHHHHHhhhcccCceEEecCCeEEEEcCCCe
Confidence 34588999999999 77889999999999886643 12 578999999998 543 355567778766554433243
Q ss_pred EEEEEEEEEE--cCC-CCccee--EEEEEEEEeCCeEEEEcceEEeec
Q 012554 90 VIVLVTGYLT--GKD-SVRRKF--SQSFFLAPQDKGYFVLNDVFRYVD 132 (461)
Q Consensus 90 ilv~V~G~~~--~~~-~~~~~F--~q~F~L~~~~~~y~v~nd~fr~~~ 132 (461)
..+.+...+. ... .....+ .-+..|...+++|.|..-.+.+.-
T Consensus 108 A~~~~~~~~~~~~~~~~~~~~~~gry~d~l~r~dg~WrI~~r~~~~~~ 155 (176)
T 3a76_A 108 VNGIGDVLLLGNLVEGNQSILIAAVFTDEYERRDGVWKFSKRNACTNY 155 (176)
T ss_dssp EEEEEEEEEEEEETGGGEEEEEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred EEEEEEEEEEEEecCCCceEEEEEEEEEEEEEECCEEEEEEEEEEEEe
Confidence 3332211221 122 111111 123456677889999998776644
No 265
>3f14_A Uncharacterized NTF2-like protein; YP_680363.1, NTF2-like protein of unknown function, structur genomics; HET: MSE TRS PGE; 1.45A {Cytophaga hutchinsonii atcc 33406}
Probab=92.69 E-value=0.77 Score=36.91 Aligned_cols=90 Identities=7% Similarity=-0.013 Sum_probs=58.4
Q ss_pred HHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCC--CCcceEEEEEeeeeeeCCCcEEEE
Q 012554 17 AFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALH--YGEFSAEITTVDAQESYNGGVIVL 93 (461)
Q Consensus 17 ~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~--~~~~~~~I~~~d~q~s~~~~ilv~ 93 (461)
+.|+.||..|+ .+.+.|..++.++-.+...+. ....|.+++.+.+..+. +.+.+++|..+=+ .++ +|.
T Consensus 4 ~~v~~~~~a~~~gD~~~~~~~ladDv~w~~~g~----~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~i~---~Gd--~Vv 74 (112)
T 3f14_A 4 TTHYSIAQHFSSGDFPAVYACFNDIIEWNIIGN----QVVKGKADVIDFCNKMLPEMKGAVLTNDNVIQ---NEN--QIV 74 (112)
T ss_dssp HHHHHHHHHHHTTCGGGTGGGEEEEEEEEETTT----EEEESHHHHHHHHHHHHHHHHTSEEEEEEEEE---CSS--EEE
T ss_pred HHHHHHHHHHHcCCHHHHHHhcCCceEEEEcCC----ccEecHHHHHHHHHHHHhhcCCcEEEEEEEEE---eCC--EEE
Confidence 57999999999 577899999999876554443 36789999998887652 2234667665322 233 344
Q ss_pred EEEEEE--cCCC--CcceeEEEEEEE
Q 012554 94 VTGYLT--GKDS--VRRKFSQSFFLA 115 (461)
Q Consensus 94 V~G~~~--~~~~--~~~~F~q~F~L~ 115 (461)
|.|.+. .++. ....|+..|.+.
T Consensus 75 v~~~~~~~~~~g~~~~~~~~~vf~~~ 100 (112)
T 3f14_A 75 IEGKCRYFDAEGKEAFVSYCDIYRFE 100 (112)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred EEEEEEEEeCCCCEEEEEEEEEEEEe
Confidence 555544 3222 225677777763
No 266
>1nww_A Limonene-1,2-epoxide hydrolase; HET: MES; 1.20A {Rhodococcus erythropolis} SCOP: d.17.4.8 PDB: 1nu3_A*
Probab=92.63 E-value=1.6 Score=36.46 Aligned_cols=50 Identities=8% Similarity=0.123 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC
Q 012554 15 ANAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL 68 (461)
Q Consensus 15 g~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l 68 (461)
-.+.|+.||..++ .+.+.|..||.++..+...+. ....|.++|.+++..+
T Consensus 24 ~~~~v~~~~~a~~~~D~~~l~~l~a~D~~~~~~~~----~~~~G~~~i~~~~~~~ 74 (149)
T 1nww_A 24 DEKIVLEFMDALTSNDAAKLIEYFAEDTMYQNMPL----PPAYGRDAVEQTLAGL 74 (149)
T ss_dssp HHHHHHHHHHHGGGCCHHHHHTTBCSSCEEEETTS----CCEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHhCCCEEEEcCCC----CCccCHHHHHHHHHHH
Confidence 3678899999988 578999999999998876542 2578999999998876
No 267
>3fsd_A NTF2-like protein of unknown function in nutrient; YP_427473.1, NTF2-like protein of unknown function in nutrie uptake; HET: UNL; 1.70A {Rhodospirillum rubrum atcc 11170} SCOP: d.17.4.0
Probab=92.55 E-value=1 Score=37.42 Aligned_cols=105 Identities=9% Similarity=0.026 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCCCCcceEEEEEeeeeeeCCCcEEEEE
Q 012554 16 NAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALHYGEFSAEITTVDAQESYNGGVIVLV 94 (461)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~I~~~d~q~s~~~~ilv~V 94 (461)
.+..++|+.-|. .+.+.|..+|.++-++.+.+ | ...+.++..+.+.+-...-....|..+..+...++..+|..
T Consensus 17 ~~l~~~~~~A~~~~D~~~l~~L~~~d~~~v~~~--G---~~~~~~~~l~~~~~g~~~~~~~~~~~~~v~~~g~d~Avv~~ 91 (134)
T 3fsd_A 17 AFYEERLRAAMLTGDLKGLETLLADDLAFVDHT--G---CVKTKQTHLEPYRAGLLKLSRLDLSDAVVRAAGEDGRVVVV 91 (134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHEEEEEEEECTT--S---CEECHHHHHHHHHTTCEEEEEEEEEEEEEEESSTTEEEEEE
T ss_pred HHHHHHHHHHHHhCCHHHHHhhcCCCEEEECCC--C---cCccHHHHHHHHHcCCceEEEEEEeccEEEEeCCCEEEEEE
Confidence 444566666554 99999999999987776643 3 33445554455553221112555666666666554444433
Q ss_pred EEEEEc--CCCCc-ceeEEEEEEEEeCCe--EEEEc
Q 012554 95 TGYLTG--KDSVR-RKFSQSFFLAPQDKG--YFVLN 125 (461)
Q Consensus 95 ~G~~~~--~~~~~-~~F~q~F~L~~~~~~--y~v~n 125 (461)
.-.+.. ++.+. ..+.+|-+....+++ |-|+.
T Consensus 92 ~~~~~~~~~g~~~~~~~~~t~vw~k~~g~~gWriv~ 127 (134)
T 3fsd_A 92 RAVTAGVYDGEAFTETLRFTRIWRRTQGPAGWKLVA 127 (134)
T ss_dssp EEEEEEEETTEEEEEEEEEEEEEEEETTTTEEEEEE
T ss_pred EEEEEEEeCCcEEEEEEEEEEEEEECCCCccceEeE
Confidence 333322 23221 234455555677777 98765
No 268
>4h3u_A Hypothetical protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.15A {Catenulispora acidiphila}
Probab=92.11 E-value=1.6 Score=37.21 Aligned_cols=104 Identities=10% Similarity=0.053 Sum_probs=63.2
Q ss_pred HHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC--CCCcceEEEEEeeeeeeCCCcEEEE
Q 012554 17 AFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL--HYGEFSAEITTVDAQESYNGGVIVL 93 (461)
Q Consensus 17 ~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~I~~~d~q~s~~~~ilv~ 93 (461)
+.|+.||..++ .+.+.|..||.++.++.-.... ....|.++|.+.+..+ .|.++++.|..+=+ .++.+++.
T Consensus 29 eiv~~y~~A~n~~D~d~~~~l~a~D~v~~d~~~g---~~~~Greai~~~~~~~~~~~~d~~~~v~~~~~---~gd~v~~~ 102 (158)
T 4h3u_A 29 EIVTAWAAAWTGTNPNALGTLFAADGTYVDHAIG---ATMTGREQISGWKARTDAMIENVHVTITKAYR---AGDHVTIE 102 (158)
T ss_dssp HHHHHHHHHHHSSCHHHHHTTEEEEEEEEETTTT---EEEESHHHHHHHHHHHHHHEEEEEEEEEEEEE---ETTEEEEE
T ss_pred HHHHHHHHHHHcCCHHHHHHHhcccceEeccCCC---ceEecchhhhhhhhhhhccCCccceeEeEEee---cCceEEEE
Confidence 47899999998 7899999999999987643221 2688999999998876 25555666654322 23444443
Q ss_pred E--EEEEEcCCCC-cceeEEEEEEEEeCCeEEEEcceE
Q 012554 94 V--TGYLTGKDSV-RRKFSQSFFLAPQDKGYFVLNDVF 128 (461)
Q Consensus 94 V--~G~~~~~~~~-~~~F~q~F~L~~~~~~y~v~nd~f 128 (461)
. +|.....+.+ ...++..|.| .+++-.-..|.|
T Consensus 103 ~~~~gt~~~tG~~~~~~~~~v~~~--~dGkI~~~~~y~ 138 (158)
T 4h3u_A 103 AVYGGHIKGAPTPFAVPMATLLRT--RGEEITSDQDYY 138 (158)
T ss_dssp EEEEEEETTSSSCEEEEEEEEEEE--ETTEEEEEEEEE
T ss_pred EEEEEEecCccCcceeeeEEEEEE--ECCEEEEEEEEE
Confidence 3 3333222221 1345555555 354444444444
No 269
>3en8_A Uncharacterized NTF-2 like protein; YP_553245.1, NTF-2 like protein of unknown function, structu genomics; HET: MSE PG4; 1.85A {Burkholderia xenovorans LB400} SCOP: d.17.4.20
Probab=91.39 E-value=3.9 Score=33.64 Aligned_cols=64 Identities=8% Similarity=-0.046 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCCCCcceEEEEEe
Q 012554 14 VANAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALHYGEFSAEITTV 80 (461)
Q Consensus 14 vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~I~~~ 80 (461)
--.+.|+.||..|+ .+.+.|..||.++..+.++.. .....|.++|.+++..++-....++|..+
T Consensus 6 ~~~~~v~~~~~a~~~~D~~~l~~llaeD~v~~~P~~---~~~~~Gr~~~~~~~~~~~~~~~~~~i~~~ 70 (128)
T 3en8_A 6 KIREALNAHWQASAAGDFDAEHDIYDDDAICDYPQS---GERILGRMNLQALRSHHPGKPAGFEVRRI 70 (128)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHTTTEEEEEEEEETTT---TEEEESHHHHHHHHHHTTCSCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHhcCCCEEEECCCC---CCEEECHHHHHHHHHHCCCCCcceEEEEE
Confidence 34678999999988 789999999999999988643 12678999999988877633222555543
No 270
>3ff0_A Phenazine biosynthesis protein PHZB 2; cystatin-like fold, antibiotic biosynthesis, virulence, STRU genomics; 1.90A {Pseudomonas aeruginosa}
Probab=91.28 E-value=1.9 Score=37.67 Aligned_cols=96 Identities=10% Similarity=0.060 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHccCchhhhccccCCce---eeccCCCCcccccccHHHHHHHHHhCC--CCcceEEEEEeeeeeeCCC
Q 012554 14 VANAFVHQYYLILHQSPQLVHRFYQDISK---LGRPEENGAMSITTTMQAINDKILALH--YGEFSAEITTVDAQESYNG 88 (461)
Q Consensus 14 vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~---l~~~~~~~~~~~~~g~~~I~~~~~~l~--~~~~~~~I~~~d~q~s~~~ 88 (461)
--.+-|++||.++.++.+.++.||.++.+ +.. ..|......|+++|.+++..+. |.+ .++..+....+.+.
T Consensus 20 ~Nr~vV~~~l~~~~~D~~~~~~LfAeD~v~~~~e~--~~G~P~~~~Gre~l~~~~~~~~~~~~~--~~~~~~~i~~t~Dp 95 (163)
T 3ff0_A 20 KNRETVVKYMNTKGQDRLRRHELFVEDGCGGLWTT--DTGSPIVIRGKDKLAEHAVWSLKCFPD--WEWYNIKVFETDDP 95 (163)
T ss_dssp HHHHHHHHHHTCCGGGGGGGGGGEEEEEEEEESSC--SSSSCEEEESHHHHHHHHHHHHHHSTT--CEEEEEEEEEBSST
T ss_pred HHHHHHHHHHHHhcCCHHHHHHhcCCcccceeeEE--CCCCCcceecHHHHHHHHHHHHhhCCC--ceeeeEEEEEcCCC
Confidence 34677999999999999999999999998 542 2244557899999999987652 332 35666667666554
Q ss_pred -cEEEEEEEEEEc--CCCCcceeEEEEE
Q 012554 89 -GVIVLVTGYLTG--KDSVRRKFSQSFF 113 (461)
Q Consensus 89 -~ilv~V~G~~~~--~~~~~~~F~q~F~ 113 (461)
.|+|-..|.-+. .+.+.-.|.+.|+
T Consensus 96 d~vvvE~~~~g~i~~tG~~~~~y~~~yi 123 (163)
T 3ff0_A 96 NHFWVECDGHGKILFPGYPEGYYENHFL 123 (163)
T ss_dssp TEEEEEEEEEEEECCTTSCCEEEEEEEE
T ss_pred CEEEEEEEEEEEEcCCCcccccEEEeEE
Confidence 456555554443 3333122555554
No 271
>1oh0_A Steroid delta-isomerase; ketosteroid isomerase, KSI, equilenin, PI, LBHB; HET: EQU; 1.1A {Pseudomonas putida} SCOP: d.17.4.3 PDB: 1e3v_A* 1opy_A 1dmq_A 1dmm_A 1ea2_A 3cpo_A 1e3r_A* 1ogx_A 2inx_A 2pzv_A 1c7h_A 1dmn_A 1k41_A 1oho_A* 3fzw_A* 1cqs_A* 1w00_A 1e97_A 1w6y_A* 3ipt_A* ...
Probab=91.02 E-value=0.98 Score=36.71 Aligned_cols=63 Identities=8% Similarity=0.006 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC--CCCcceEEEEE
Q 012554 14 VANAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL--HYGEFSAEITT 79 (461)
Q Consensus 14 vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~I~~ 79 (461)
--...|+.||..++ .+.+.|..+|.++..+..... ...+.|.++|.+.+..+ .+.++++.|..
T Consensus 8 ~~~~~v~~~~~a~~~~D~~~l~~l~a~D~~~~~p~~---~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~ 73 (131)
T 1oh0_A 8 EVQGLMARYIELVDVGDIEAIVQMYADDATVEDPFG---QPPIHGREQIAAFYRQGLGGGKVRACLTGP 73 (131)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEESSTT---SCCEEHHHHHHHHHHHHHSSSCCEEEESSC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHcCCCEEEEcCCC---CCCcccHHHHHHHHHHHhhccceeEeecce
Confidence 34678999999999 578999999999998876532 12789999999998876 24444444433
No 272
>3hk4_A MLR7391 protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, lyase; HET: MSE; 1.96A {Mesorhizobium loti}
Probab=90.95 E-value=2.8 Score=35.21 Aligned_cols=99 Identities=11% Similarity=0.075 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHccCc--hhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC--CCCcceEEEEEeeeeeeCCCcEE
Q 012554 16 NAFVHQYYLILHQSP--QLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL--HYGEFSAEITTVDAQESYNGGVI 91 (461)
Q Consensus 16 ~~Fv~~YY~~l~~~p--~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~I~~~d~q~s~~~~il 91 (461)
.+-|+.||..+++.. +.|..||.++.++..+.. .......|+++|.+++..+ .+..|.++|..+- ..++-++
T Consensus 23 kevv~r~~e~~~~gd~~~~l~~lya~D~v~~dp~~-~~~~~~~G~eai~~~~~~~~~~~~~~~~~i~~~~---v~gd~v~ 98 (136)
T 3hk4_A 23 AEIAKDFTELLKQGDNAGAAEKYNADDIASYEAME-GPMAVSHGKEALRQKSQWWQENHEVHGGSVEGPY---VNGDQFA 98 (136)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHEEEEEEEECSSC-STTSEEESHHHHHHHHHHHHHTEEEEEEEEEEEE---EETTEEE
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHCCCCEEEEcCCC-CCccccCCHHHHHHHHHHHHhcCCeeeeeecceE---EcCCEEE
Confidence 345777788887654 468999999999876532 1122578999999988755 3444445554322 2245566
Q ss_pred EEEEEEEEcC-CCCcceeEEEEEEEEeC
Q 012554 92 VLVTGYLTGK-DSVRRKFSQSFFLAPQD 118 (461)
Q Consensus 92 v~V~G~~~~~-~~~~~~F~q~F~L~~~~ 118 (461)
+.-+...+.. ......+...-++.-.+
T Consensus 99 v~~~~~gth~~tG~~i~~~~i~v~rv~D 126 (136)
T 3hk4_A 99 LRFKFDVTPKATGERVTMDEVGLYTVKN 126 (136)
T ss_dssp EEEEEEEEETTTCCCEEEEEEEEEEEET
T ss_pred EEEEEEEEECCCCcEEEEEEEEEEEEEC
Confidence 6555555554 34455555555554333
No 273
>3i0y_A Putative polyketide cyclase; cystatin-like fold, structural genomics, joint center for ST genomics, JCSG, protein structure initiative; HET: MSE UNL; 1.50A {Xanthomonas campestris PV}
Probab=90.50 E-value=3.4 Score=33.88 Aligned_cols=51 Identities=12% Similarity=0.118 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCC
Q 012554 15 ANAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALH 69 (461)
Q Consensus 15 g~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~ 69 (461)
..+.|+.||..++ .+.+.|..+|.++..+..+.. ....|.++|..++..+.
T Consensus 10 ~~~~v~~~~~a~~~~D~~~~~~l~a~D~~~~~p~~----~~~~G~~~~~~~~~~~~ 61 (140)
T 3i0y_A 10 ATGLVQAYYEAFNRGDWDAMLAFLAEDVAHDLNQG----PREIGRAAFASFLQRMN 61 (140)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHTEEEEEEEECTTS----CEEESHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHcCCcEEEEcCCC----CceEcHHHHHHHHHHHh
Confidence 4578999999997 689999999999987655421 27899999999888764
No 274
>3ebt_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; 1.30A {Burkholderia pseudomallei K96243} SCOP: d.17.4.9
Probab=90.39 E-value=3.3 Score=33.56 Aligned_cols=65 Identities=12% Similarity=0.045 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHc-cCchhhhccccCCceeeccCC---CCcccccccHHHHHHHHHhCC--CCcceEEEEEe
Q 012554 16 NAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEE---NGAMSITTTMQAINDKILALH--YGEFSAEITTV 80 (461)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~---~~~~~~~~g~~~I~~~~~~l~--~~~~~~~I~~~ 80 (461)
.+-|++||..|+ .+.+.|..+|.++..+...+. ........|.++|.+.+..+. |.+.+++|..+
T Consensus 6 ~~~v~~~~~a~~~~d~~~~~~l~a~D~~~~~~~~~~p~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (132)
T 3ebt_A 6 MQTVRESYEAFHRRDLPGVLAALAPDVRWTHPDGMSPYGLGGTKHGHDEVIAFIRHVPTHIAEMRLAPDEF 76 (132)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTEEEEEEEEECGGGGGGTCCEEEEHHHHHHHHHHHGGGTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhccCHHHHHHhcCCCEEEEeCCCCCCcccCCcCcCHHHHHHHHHHHHhhCCceEEEEeEE
Confidence 356888898888 578999999999988765421 000137889999999998773 44555665543
No 275
>3dmc_A NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, unknow function; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.17.4.10
Probab=90.28 E-value=5.6 Score=32.93 Aligned_cols=62 Identities=10% Similarity=-0.071 Sum_probs=49.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC
Q 012554 6 HQAPTADIVANAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL 68 (461)
Q Consensus 6 ~~~~~~~~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l 68 (461)
......-++..+.++.||..|. .+.+.|..++.++..+.+++. +......|.++|.+++..+
T Consensus 5 ~~~~~~~~~~~~~~~~f~~A~~~gD~~~l~~lla~D~v~~~pg~-~~~g~~~G~~~v~~~~~~~ 67 (134)
T 3dmc_A 5 HYSDNTLKVAHQGFEFFTQGLATGEWQKFLDMLTEDFTFWFPMG-EFHGLNVGKERAKEFFTYV 67 (134)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHSCCHHHHTTEEEEEEEEESSG-GGBEEEESHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHcCCCEEEEecCC-CCCccchhHHHHHHHHHHH
Confidence 3455567899999999999987 788999999999999988764 2233578999999888765
No 276
>1ohp_A Steroid delta-isomerase; inhibitor; HET: ESR; 1.53A {Pseudomonas testosteroni} SCOP: d.17.4.3 PDB: 1qjg_A* 8cho_A* 1ohs_A* 1ocv_A 1isk_A 3nuv_A* 1ogz_A* 3nhx_A* 3m8c_A* 3nxj_A* 3myt_A* 3mki_A 3mhe_A 1buq_A* 3nbr_A* 3t8u_A 3ov4_A* 3nm2_A
Probab=90.19 E-value=1.5 Score=34.89 Aligned_cols=51 Identities=16% Similarity=0.181 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC
Q 012554 15 ANAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL 68 (461)
Q Consensus 15 g~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l 68 (461)
-...|+.||..++ .+.+.|..+|.++..+...... ..+.|.++|.+.+..+
T Consensus 7 ~~~~v~~~~~a~~~~D~~~~~~l~a~D~~~~~~~~~---~~~~G~~~i~~~~~~~ 58 (125)
T 1ohp_A 7 MTAVVQRYVAALNAGDLDGIVALFADDATVENPVGS---EPRSGTAAIREFYANS 58 (125)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHTTEEEEEEEESSTTS---CCEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHcCCCeEEECCCCC---CCccCHHHHHHHHHHh
Confidence 4678999999998 6889999999999988764221 2789999999999876
No 277
>3gzb_A Putative snoal-like polyketide cyclase; YP_001182657.1, STRU genomics, joint center for structural genomics, JCSG; HET: MSE; 1.44A {Shewanella putrefaciens} PDB: 3lza_A*
Probab=90.16 E-value=0.78 Score=38.17 Aligned_cols=78 Identities=23% Similarity=0.238 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHcc-CchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCC--CCcceEEEEEeeeeeeCCCcEEE
Q 012554 16 NAFVHQYYLILHQ-SPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALH--YGEFSAEITTVDAQESYNGGVIV 92 (461)
Q Consensus 16 ~~Fv~~YY~~l~~-~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~--~~~~~~~I~~~d~q~s~~~~ilv 92 (461)
..|...|-..|-. ++..|.+||..+|.+.-.-.+ ...+|...|..+|.... .-.....|+++ ++.|-||
T Consensus 23 qqlA~~Yi~AlT~hDy~~L~~FynrdsVf~D~ta~---~~YtG~r~Ii~Fl~RaH~gvLey~fnieHm-----fnsGsLV 94 (154)
T 3gzb_A 23 QQLAVKYMDALTEHDYKTLITFYNRDSIFFDKTAN---RKYTGGRFIIDFLERAHQGVLEYDFNIEHM-----YNAGSLV 94 (154)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTCCTTCEEEETTTT---EEEESHHHHHHHHHHHTTTCCCCEEEEEEE-----EEETTEE
T ss_pred HHHHHHHHHHHhccCHHHHHHHhCccceeeeeccC---cceeCcHHHHHHHHHHhhhheeeccChhhh-----ccCCcEE
Confidence 4566778888875 999999999999999654321 37899999999998542 11234455553 3445667
Q ss_pred EEEEEEEcC
Q 012554 93 LVTGYLTGK 101 (461)
Q Consensus 93 ~V~G~~~~~ 101 (461)
+.+|..-++
T Consensus 95 VmiGnY~~k 103 (154)
T 3gzb_A 95 VMIGNYHFK 103 (154)
T ss_dssp EEEEEEEEE
T ss_pred EEEcceeec
Confidence 777885554
No 278
>2rgq_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.80A {Nostoc punctiforme} SCOP: d.17.4.25
Probab=90.14 E-value=7.3 Score=32.40 Aligned_cols=111 Identities=7% Similarity=0.000 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC---CCCcceEEEEEeeeeeeCCCc
Q 012554 14 VANAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL---HYGEFSAEITTVDAQESYNGG 89 (461)
Q Consensus 14 vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l---~~~~~~~~I~~~d~q~s~~~~ 89 (461)
--..|+..|...|+ .+.+.+..+|.+++.+...+ | ...|.++|...+... ....+.|.|.++-.... ++.
T Consensus 11 ~I~~l~~rya~~lD~~d~~~~~~lft~Da~~~~~~--g---~~~g~~~i~~~~~~~~~~~~~~t~H~i~n~~i~~~-~d~ 84 (144)
T 2rgq_A 11 EIMELAARFEMSLDKEDVENYLATFASDGALQGFW--G---IAKGKEELRQGFYAMLDTFARGKRHCSSNAIIQGN-YDE 84 (144)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEEETT--E---EEESHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEC-SSE
T ss_pred HHHHHHHHHHHHHcCCCHHHHHhhccCcEEEEcCC--C---CCCCHHHHHHHHHHHHhhCCCCcEEecCCeEEEEe-CCE
Confidence 34689999999999 78899999999999886652 2 348999998888643 12236788887766433 222
Q ss_pred EEEEEEEEEEcCCCCcceeE--EEEEEEEeCCeEEEEcceEEe
Q 012554 90 VIVLVTGYLTGKDSVRRKFS--QSFFLAPQDKGYFVLNDVFRY 130 (461)
Q Consensus 90 ilv~V~G~~~~~~~~~~~F~--q~F~L~~~~~~y~v~nd~fr~ 130 (461)
..+...-.+.........+. -+..|...+++|.|..-.+.+
T Consensus 85 a~~~~~~~~~~~~~~~~~~~g~y~d~~~r~dg~Wri~~r~~~~ 127 (144)
T 2rgq_A 85 ATMESYLTVVNREDLNRAGSAFVKDQVRKINGKWYLILRQIEV 127 (144)
T ss_dssp EEEEEEEEEEESSSSCEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEEEEEEEecCCeEEEEEEEEEEEEEECCEEEEEEEEEEe
Confidence 22222222222111111111 233566678889888866643
No 279
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=89.81 E-value=0.29 Score=41.98 Aligned_cols=30 Identities=3% Similarity=-0.103 Sum_probs=25.2
Q ss_pred EEEEeCcCCccEEEEEEccHHHHHHHHHhC
Q 012554 321 GIQVKTQKGFCFGFVEFEEENAVQSAIEAS 350 (461)
Q Consensus 321 ~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~ 350 (461)
.|.++..+++||+||+|.+.++|++||+.+
T Consensus 4 kl~ln~~~~~G~~fV~f~~~~~A~~al~~~ 33 (158)
T 2kn4_A 4 KLILNGKTLKGETTTEAVDAATAEKVFKQY 33 (158)
T ss_dssp EEEEECSSCEEEEEEECSSHHHHHHHHHHH
T ss_pred EEEecCccccchhHHHHHHHHhHHHHHHhh
Confidence 355555568999999999999999999876
No 280
>1sjw_A Nogalonic acid methyl ester cyclase; anthracyclines, nogalamycin, snoal, aldol condensation, LYAS structural genomics; HET: NGV; 1.35A {Streptomyces nogalater} SCOP: d.17.4.9
Probab=89.58 E-value=3.6 Score=33.98 Aligned_cols=63 Identities=13% Similarity=0.068 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC--CCC-cceEEEEEee
Q 012554 16 NAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL--HYG-EFSAEITTVD 81 (461)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~-~~~~~I~~~d 81 (461)
.+.|++||..++ .+.+.|..||.++..+..... + ....|.++|.+.+..+ .|. +++++|..+-
T Consensus 5 ~~~v~~~~~a~~~~d~~~~~~~~a~d~~~~~~~~-~--~~~~G~~~~~~~~~~~~~~~~~~~~~~i~~~~ 71 (144)
T 1sjw_A 5 TEIVRRMVSAFNTGRTDDVDEYIHPDYLNPATLE-H--GIHTGPKAFAQLVGWVRATFSEEARLEEVRIE 71 (144)
T ss_dssp HHHHHHHHHHHHHCCCTTGGGTEEEEEECGGGGG-G--TCCSHHHHHHHHHHHHHHHHCTTCEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCHHHHHHHcCcCeEEccCCC-C--CCCCCHHHHHHHHHHHHHhCCCCcEEEEEEEE
Confidence 568999999887 678999999999977654332 1 1238999999888766 355 6777776643
No 281
>2gex_A SNOL; alpha+beta barrel, oxidoreductase; 2.50A {Streptomyces nogalater} SCOP: d.17.4.9
Probab=89.33 E-value=6 Score=33.14 Aligned_cols=63 Identities=3% Similarity=-0.014 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC--CCCcceEEEEEee
Q 012554 14 VANAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL--HYGEFSAEITTVD 81 (461)
Q Consensus 14 vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~I~~~d 81 (461)
--...|+.||..++ .+.+.|..||.++..+.... + ...|.++|.+.+..+ .|.+++++|..+-
T Consensus 5 ~~~~~v~~~~~a~~~~d~~~~~~~~a~D~v~~~~~--~---~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~ 70 (152)
T 2gex_A 5 ANKERCLEMVAAWNRWDVSGVVAHWAPDVVHYDDE--D---KPVSAEEVVRRMNSAVEAFPDLRLDVRSIV 70 (152)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTT--S---CEECHHHHHHHHHHHHHHCTTCEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHcCCCeEEeCCC--C---CCCCHHHHHHHHHHHHHhCCCcEEEEEEEE
Confidence 34678899999887 56789999999998776532 2 678999999888765 3556778776543
No 282
>3fh1_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=89.28 E-value=3.3 Score=33.76 Aligned_cols=69 Identities=6% Similarity=0.024 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC-CCCcceEEEEEe
Q 012554 12 DIVANAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL-HYGEFSAEITTV 80 (461)
Q Consensus 12 ~~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l-~~~~~~~~I~~~ 80 (461)
.+--.+.|+.||..++ .+.+.|..||.++..+...+.......+.|.++|.+.+..+ .|.+++++|..+
T Consensus 16 ~~~~~~~v~~~~~a~~~~D~~~l~~l~a~D~v~~~p~~~~~g~~~~G~~~i~~~~~~~~~~~~~~~~i~~~ 86 (129)
T 3fh1_A 16 SEQTAEIMRRFNDVFQLHDPAALPELIAEECVIENTVPAPDGARHAGRQACVQLWSAIATQPGTRFDLEET 86 (129)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHEEEEEEEECSCSTTTCCEEESHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHhcCCCEEEECCCCCCCCCcccCHHHHHHHHHHHhcCCCceEEEeEE
Confidence 4456789999999998 78899999999999887653111112568999999988753 255667776543
No 283
>3f7x_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL; 1.24A {Pseudomonas putida KT2440}
Probab=89.24 E-value=4.6 Score=34.17 Aligned_cols=50 Identities=10% Similarity=0.093 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC
Q 012554 15 ANAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL 68 (461)
Q Consensus 15 g~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l 68 (461)
.++.|+.||..++ .+.+.|..+|.++..+..+. | ....|.++|.+.+..+
T Consensus 22 ~~~lv~~~~~a~~~~D~~~l~~l~a~D~v~~~p~--g--~~~~G~e~i~~~~~~~ 72 (151)
T 3f7x_A 22 ATELVNAYYAAFNAGDMPAFLALLSEDVIHDINQ--G--ERQMGKARFAAFMEKM 72 (151)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHTEEEEEEEECTT--S--CEEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhcCCCEEEECCC--C--CCcCCHHHHHHHHHHH
Confidence 4678999999998 68899999999999974422 1 2788999999988866
No 284
>3k0z_A Putative polyketide cyclase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS lipoprotein; HET: NHE; 1.91A {Bacillus cereus}
Probab=89.02 E-value=7.1 Score=33.25 Aligned_cols=63 Identities=8% Similarity=0.033 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC--CCCcceEEEEEee
Q 012554 15 ANAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL--HYGEFSAEITTVD 81 (461)
Q Consensus 15 g~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~I~~~d 81 (461)
-.+.|+.||..++ .+.+.|..||.++..+..... | ...|.++|.+.+..+ .|.+++++|..+-
T Consensus 36 n~~~v~~~~~a~~~~d~~~l~~~~a~D~v~~~p~~-g---~~~G~e~~~~~~~~~~~~~pd~~~~i~~~~ 101 (159)
T 3k0z_A 36 MVHAAQRFYAFWDTGKEELIPQTVTENFFDHTLPK-G---RPQGTEGLKFAAQNFRKIVPNIHCEIEDLL 101 (159)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHEEEEEEESSCCT-T---CCSSHHHHHHHHHHHHTTCCSEEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHcCCCeEEecCCC-C---CCCCHHHHHHHHHHHHHhCCCcEEEEEEEE
Confidence 4678999999999 588999999999987655421 2 678999999988765 4667777776543
No 285
>3ec9_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.60A {Burkholderia thailandensis E264} SCOP: d.17.4.10
Probab=88.95 E-value=5.1 Score=32.92 Aligned_cols=65 Identities=8% Similarity=0.073 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHH-HHHHhC--CCCcceEEEEEe
Q 012554 16 NAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAIN-DKILAL--HYGEFSAEITTV 80 (461)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~-~~~~~l--~~~~~~~~I~~~ 80 (461)
.+.|+.||..|+ .+.+.|..+|.++..+...+..-......|.++|. ..+..| .|.++++.|..+
T Consensus 15 ~~~v~~~~~a~~~gD~~~~~~l~a~D~~~~~~~~~p~~g~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~ 83 (140)
T 3ec9_A 15 YQIVADHYAASDRHDPAAMMADIAPAIEWTEMAGFPCAGTYRSADEIVRNVFRRLGEEWDGYTFKLDAL 83 (140)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTEEEEEEEEECTTSTTCEEECSHHHHHHHTHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCHHHHHHhcCCCeEEEEcCCCccceEEcCHHHHHHHHHHHHHhhCCcceeEEEEE
Confidence 456888999887 67899999999999876654111123678999995 556554 244455555544
No 286
>3g8z_A Protein of unknown function with cystatin-like FO; NP_639274.1, snoal-like polyketide cyclase; HET: MSE; 1.90A {Xanthomonas campestris PV}
Probab=88.87 E-value=2 Score=36.33 Aligned_cols=55 Identities=5% Similarity=0.029 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC
Q 012554 14 VANAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL 68 (461)
Q Consensus 14 vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l 68 (461)
--.+.|+.||..|+ .+.+.|..||.++..+...+...-.....|.++|.+.+..+
T Consensus 21 ~n~~~v~~~~~a~~~gD~~~l~~l~a~D~v~~~p~~~~~~g~~~G~~~v~~~~~~~ 76 (148)
T 3g8z_A 21 NTIDIAKSYITAIQTGDHATLGSIISPDVIWHQPGNHQFSGTHRGMAVVGPMLGKM 76 (148)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEECSSSTTCEEEESHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCCHHHHHHHcCCCEEEEcCCCCCCCceEcCHHHHHHHHHHH
Confidence 34677888999888 67899999999999887765311122468999999988755
No 287
>2a15_A Hypothetical protein RV0760C; beta-alpha-barrel, structural genomics, PSI, protein structure initiative; 1.68A {Mycobacterium tuberculosis} SCOP: d.17.4.3 PDB: 2z76_A* 2z77_A* 2z7a_A
Probab=88.78 E-value=6.1 Score=32.31 Aligned_cols=63 Identities=8% Similarity=-0.060 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHc-cCchhhhccccCCceeeccCCCC----cccccccHHHHHHHHHhCC--CCcceEEEE
Q 012554 15 ANAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENG----AMSITTTMQAINDKILALH--YGEFSAEIT 78 (461)
Q Consensus 15 g~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~----~~~~~~g~~~I~~~~~~l~--~~~~~~~I~ 78 (461)
....|+.||..++ .+.+.|..+|.++..+..+.... ......|.++|.+.+..+- + ++++.+.
T Consensus 9 ~~~~v~~~~~a~~~~D~~~~~~l~a~D~v~~~p~~~~~~~~~g~~~~G~~ai~~~~~~~~~~~-~~~~~~~ 78 (139)
T 2a15_A 9 ALIASQSSWRCVQAHDREGWLALMADDVVIEDPIGKSVTNPDGSGIKGKEAVGAFFDTHIAAN-RLTVTCE 78 (139)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHTEEEEEEEESSSSSBTTBTTSSCEESHHHHHHHHHHHTTTT-TCEEEEE
T ss_pred HHHHHHHHHHHHhCCCHHHHHHhcCCCEEEECCCCCCccCCCCceeecHHHHHHHHHHhcccc-eeEEecc
Confidence 3567899999998 67899999999999886542110 0112799999999998762 4 4555543
No 288
>3ehc_A Snoal-like polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.12A {Agrobacterium tumefaciens str}
Probab=88.23 E-value=4.9 Score=32.54 Aligned_cols=58 Identities=14% Similarity=0.085 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC--CCCcceEEEEEee
Q 012554 16 NAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL--HYGEFSAEITTVD 81 (461)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~I~~~d 81 (461)
.+.|+.||+.|+ .+.+.|..||.++..+ .+ ...|.++|.+.+..+ .|.+++++|..+=
T Consensus 6 ~~~v~~~~~~~~~~d~~~~~~~~a~d~~~--~~------~~~G~~~~~~~~~~~~~~~pd~~~~i~~~~ 66 (128)
T 3ehc_A 6 NDIYLAYLDSLNHQAFDELGTFVDDNVEH--NG------RPFGLSGYRDMLVKDFADIPDLRFEAEILV 66 (128)
T ss_dssp HHHHHHHHHHHHTTCGGGGGGTEEEEEEE--TT------BCCHHHHHHHHHHHHHHHCTTCCCCEEEEE
T ss_pred HHHHHHHHHHHhcCCHHHHHHhcCcceEe--CC------CCCCHHHHHHHHHHHHhhCCCceEEEEEEE
Confidence 567899999988 6788999999998765 22 568899998888765 3667777776543
No 289
>2bng_A MB2760; epoxide hydrolase, limonene, hydrolase, structural proteomics in europe, spine, structural genomics; 2.5A {Mycobacterium tuberculosis} SCOP: d.17.4.8
Probab=88.13 E-value=6.6 Score=32.74 Aligned_cols=63 Identities=13% Similarity=-0.005 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCCCC-cceEEEEEe
Q 012554 14 VANAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALHYG-EFSAEITTV 80 (461)
Q Consensus 14 vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~-~~~~~I~~~ 80 (461)
-..+.|+.||..++ .+.+.|..||.++..+...+. ....|.++|.+++..+.-. +++++|..+
T Consensus 16 ~~~~~v~~f~~a~~~gD~~~l~~l~a~D~v~~~~~~----~~~~G~~~i~~~~~~~~~~~~~~~~i~~~ 80 (149)
T 2bng_A 16 EAIRAVEAFLNALQNEDFDTVDAALGDDLVYENVGF----SRIRGGRRTATLLRRMQGRVGFEVKIHRI 80 (149)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEETTT----EEEECHHHHHHHHHTTTTTCEEEEEEEEE
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHcCCCEEEEeCCC----CCccCHHHHHHHHHHHHhhcCcEEEEEEE
Confidence 44678999999988 578999999999987764332 2578999999999987321 455555544
No 290
>2gey_A ACLR protein; alpha+beta barrel, oxidoreductase; HET: PG4; 1.80A {Streptomyces galilaeus} SCOP: d.17.4.9
Probab=88.12 E-value=7.4 Score=32.86 Aligned_cols=61 Identities=3% Similarity=-0.026 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC--CCCcceEEEEEee
Q 012554 15 ANAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL--HYGEFSAEITTVD 81 (461)
Q Consensus 15 g~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~I~~~d 81 (461)
-.+.|+.||..++ .+.+.|..||.++..+..++ ...|.++|.+.+..+ .|.+++++|..+-
T Consensus 6 ~~~~v~~~~~a~~~~D~~~~~~~~a~D~v~~~p~------~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~ 69 (158)
T 2gey_A 6 RKALCLEMVAAWNRWDLSGIIKHWSPDIVHYSED------NEVSSADMVKLMEGGLKAFPDLQLEVKSIM 69 (158)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHTTEEEEEEEEETT------EEECHHHHHHHHHHHHHHSTTCEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHcCCCeEEeCCC------CCCCHHHHHHHHHHHHHhCCCcEEEEEEEE
Confidence 4678999999888 57889999999998776632 678999999888765 3567788876643
No 291
>3ef8_A Putative scyalone dehydratase; YP_496742.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE PG4; 1.50A {Novosphingobium aromaticivorans DSM12444} SCOP: d.17.4.28
Probab=87.98 E-value=5.5 Score=33.50 Aligned_cols=111 Identities=8% Similarity=-0.003 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC--CCCcceEEEEEeeeeeeCCCcEEE
Q 012554 16 NAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL--HYGEFSAEITTVDAQESYNGGVIV 92 (461)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~I~~~d~q~s~~~~ilv 92 (461)
..++..|...|+ .+.+.|..+|.++..+.+... ....|.++|.+.+..+ +|..+.|.|.++......++...+
T Consensus 14 ~~l~~ry~~~~D~~d~~~~~~lFt~D~~~~~~~~----~~~~G~~~i~~~~~~~~~~~~~~~H~~~n~~I~~~gdd~A~~ 89 (150)
T 3ef8_A 14 ERMMFDYSYHLDMNHPEELAALFVEDCEVSYAPN----FGATGRDAYKKTLEGIGTFFRGTSHHNSNICIDFVSETEANV 89 (150)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTEEEEEEEEEETT----EEEESHHHHHHHTTTHHHHEEEEEEEEEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHhcCCCHHHHHhhccCceEEEccCC----CCCCCHHHHHHHHHHhhcccCceEEecCCEEEEEcCCCEEEE
Confidence 567889999999 788999999999998866321 1468999999988765 244567778776665443333332
Q ss_pred EEEEEE--EcCCCCcceeE---EEEEEEEeCCeEEEEcceEEe
Q 012554 93 LVTGYL--TGKDSVRRKFS---QSFFLAPQDKGYFVLNDVFRY 130 (461)
Q Consensus 93 ~V~G~~--~~~~~~~~~F~---q~F~L~~~~~~y~v~nd~fr~ 130 (461)
...-.+ ...+.....+. -...|...+++|.|..=.+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~gry~d~~~r~dg~Wri~~r~~~~ 132 (150)
T 3ef8_A 90 RSVVLAIHRYTKERPDGILYGQYFDTVVKVDGQWKFKRRELRT 132 (150)
T ss_dssp EEEEEEEEEESSSSCCEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEEEEEccCCCCeEEEEEEEEEEEEEECCEEEEEEEEEEe
Confidence 222222 12222211111 223455678889888776644
No 292
>3f9s_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative; 1.76A {Acidithiobacillus ferrooxidans atcc 23}
Probab=87.26 E-value=11 Score=31.21 Aligned_cols=66 Identities=8% Similarity=0.126 Sum_probs=47.0
Q ss_pred HHHHHHHHHH-HHc-cCchhhhccccCCceeec-cCCCCcccccccHHHHHHHHHhC--CCCcceEEEEEee
Q 012554 15 ANAFVHQYYL-ILH-QSPQLVHRFYQDISKLGR-PEENGAMSITTTMQAINDKILAL--HYGEFSAEITTVD 81 (461)
Q Consensus 15 g~~Fv~~YY~-~l~-~~p~~l~~fY~~~s~l~~-~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~I~~~d 81 (461)
-.+.|+.||+ .++ .+.+.|..||.++..+.+ ++. .......|.++|.+.+..+ .|.+++++|..+-
T Consensus 8 ~~~~v~~~~~~~~~~~d~~~~~~~~a~d~~~~~~p~~-~~~g~~~G~~~~~~~~~~~~~~~pd~~~~i~~~~ 78 (146)
T 3f9s_A 8 AKEILTQFTREVWSEGNIEASDKYIAPKYTVLHDPGD-PWEGRELDVAGYKERVKTLRAAFPDQCFDIQGLF 78 (146)
T ss_dssp HHHHHHHHHHHHTTTCCGGGHHHHEEEEEEEEECTTC-TTTTCEECHHHHHHHHHHHHHHSTTCEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHcCCCeeeccCCCC-CCCCCcCCHHHHHHHHHHHHhhCCCcEEEEEEEE
Confidence 3567899996 776 688999999999988433 321 0012578999999988766 3667788887553
No 293
>2f99_A Aklanonic acid methyl ester cyclase, AKNH; anthracycline,polyketide cyclase,stereoselectivity, aklavino biosynthetic protein; HET: AKV; 1.90A {Streptomyces galilaeus} SCOP: d.17.4.9 PDB: 2f98_A*
Probab=86.81 E-value=7.2 Score=32.81 Aligned_cols=64 Identities=9% Similarity=-0.049 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC--CCC-cceEEEEEee
Q 012554 15 ANAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL--HYG-EFSAEITTVD 81 (461)
Q Consensus 15 g~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~-~~~~~I~~~d 81 (461)
..+.|+.||..++ .+.+.|..||.++..+..... + ....|.++|.+.+..+ .|. +++++|..+=
T Consensus 13 ~~~~v~~~~~a~~~~d~~~~~~~~a~D~v~~~p~~-~--~~~~G~~~~~~~~~~~~~~~p~d~~~~i~~~~ 80 (153)
T 2f99_A 13 QIAAVRRMVEAYNTGKTDDVADYIHPEYMNPGTLE-F--TSLRGPELFAINVAWVKKTFSEEARLEEVGIE 80 (153)
T ss_dssp HHHHHHHHHHHHHHCCCTTGGGTEEEEEECGGGTT-T--CCCCHHHHHHHHHHHHHHHHCTTCEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCHHHHHHhcCCCeEEecCCC-C--CCCCCHHHHHHHHHHHHHHCCCCcEEEEEEEE
Confidence 4677899999988 677899999999876654332 1 1248999999988766 355 6778776543
No 294
>1z1s_A Hypothetical protein PA3332; beta barrel, conserved hypothetical protein, structural genomics, PSI, protein structure initiative; HET: PGE; 1.49A {Pseudomonas aeruginosa PAO1} SCOP: d.17.4.10
Probab=86.04 E-value=7 Score=33.32 Aligned_cols=53 Identities=9% Similarity=0.039 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHc-cCchhhhccccCCceeeccCC-CCcccccccHHHHHHHHHhC
Q 012554 16 NAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEE-NGAMSITTTMQAINDKILAL 68 (461)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~-~~~~~~~~g~~~I~~~~~~l 68 (461)
.+.|+.||..|+ .+.+.|..+|.++..+..+.. .|......|.++|.+++..+
T Consensus 26 ~~~v~~~~~a~~~~D~~~l~~l~a~D~v~~~P~~~~g~~~~~~G~~ai~~~~~~~ 80 (163)
T 1z1s_A 26 KEILVHSLRLLENGDARGWCDLFHPEGVLEFPYAPPGWKTRFEGRETIWAHMRLF 80 (163)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHTEEEEEEEECSSCCTTSCCEEESHHHHHHTTTTG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHCCCCEEEECcCCCCCCCcccCCHHHHHHHHHHH
Confidence 456889999988 578999999999999876532 12223578999999998766
No 295
>1s5a_A Hypothetical protein YESE; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 1.70A {Bacillus subtilis} SCOP: d.17.4.10
Probab=85.77 E-value=7.1 Score=32.22 Aligned_cols=55 Identities=13% Similarity=0.123 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHc-cCchhhhccccCCceeeccCC-CCcccccccHHHHHHHHHhC
Q 012554 14 VANAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEE-NGAMSITTTMQAINDKILAL 68 (461)
Q Consensus 14 vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~-~~~~~~~~g~~~I~~~~~~l 68 (461)
--.+.|+.||..++ .+.+.|..||.++..+..... .|......|.++|.+.+..+
T Consensus 11 ~~~~~v~~~~~a~~~~D~~~l~~l~a~D~~~~~p~~~~g~~~~~~G~~~i~~~~~~~ 67 (150)
T 1s5a_A 11 KACETLRKFMAYMLEKDMKSWTELWDENAVFEFPYAPEGSPKRIEGKAAIYDYIKDY 67 (150)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTCCTTSCSEEESHHHHHHHHTTH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHhCCCCEEEEeecCCCCCCccccCHHHHHHHHHHh
Confidence 34678999999988 678999999999998876411 12222579999999998766
No 296
>3kkg_A Putative snoal-like polyketide cyclase; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2, lyase; HET: MSE PGE; 1.40A {Jannaschia SP}
Probab=84.93 E-value=7 Score=32.39 Aligned_cols=74 Identities=8% Similarity=-0.022 Sum_probs=52.1
Q ss_pred HHHHHHHHHH-HHc-cC--chhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC--CCCcceEEEEEeeeeeeCCC
Q 012554 15 ANAFVHQYYL-ILH-QS--PQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL--HYGEFSAEITTVDAQESYNG 88 (461)
Q Consensus 15 g~~Fv~~YY~-~l~-~~--p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~I~~~d~q~s~~~ 88 (461)
-.+.|+.||. .++ .+ .+.|..||.++..+..+.. ....|.++|.+.+..+ .|.+++++|..+=+. ++
T Consensus 11 n~~~v~~~~~~~~~~~d~~~~~~~~~~a~d~~~~~~~~----~~~~G~~~~~~~~~~~~~~~pd~~~~i~~~~~~---gd 83 (146)
T 3kkg_A 11 NVETVLRLFDEGWGAQDGWRDVWRETMTPGFRSIFHSN----QAVEGIEQAIAFNAVLFEGFPRLEVVVENVTVE---GD 83 (146)
T ss_dssp HHHHHHGGGTTTSTTSTTHHHHHHHHEEEEEEEEETTS----CCEESHHHHHHHHHHHHHHSTTCEEEEEEEEEE---TT
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHcCCCeEEecCCC----CCCCCHHHHHHHHHHHHHhCCCceeEEEEEEEe---CC
Confidence 3678999999 777 45 7899999999988764432 2688999998888765 366778887654332 44
Q ss_pred cEEEEEE
Q 012554 89 GVIVLVT 95 (461)
Q Consensus 89 ~ilv~V~ 95 (461)
.|++..+
T Consensus 84 ~v~~~~~ 90 (146)
T 3kkg_A 84 NVVVQAR 90 (146)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 4444433
No 297
>1tuh_A BAL32A, hypothetical protein EGC068; unknown function; 1.85A {Uncultured bacterium} SCOP: d.17.4.11
Probab=84.87 E-value=15 Score=30.65 Aligned_cols=68 Identities=13% Similarity=0.131 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCC--CC-cceEEEEEe
Q 012554 13 IVANAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALH--YG-EFSAEITTV 80 (461)
Q Consensus 13 ~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~--~~-~~~~~I~~~ 80 (461)
+-..+.|++||..++ .+.+.|..||.++..+...+.........|.++|.+.+..+. +. +++++|..+
T Consensus 29 ~~~~~~v~~~~~a~~~gD~~~l~~l~a~D~~~~~~~~~~~~g~~~G~~~i~~~~~~~~~~~~~~~~~~i~~~ 100 (156)
T 1tuh_A 29 EQNAETVRRGYAAFNSGDMKTLTELFDENASWHTPGRSRIAGDHKGREAIFAQFGRYGGETGGTFKAVLLHV 100 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEECSSSTTCEEEESHHHHHHHHHHHHHTTTTCCEEEEEEE
T ss_pred chHHHHHHHHHHHHhCCCHHHHHHhcCCCEEEEccCCCCccceEcCHHHHHHHHHHHHhhcCCceEEEEEEE
Confidence 345778999999988 678999999999988766543111124689999998887652 21 455666543
No 298
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=84.21 E-value=0.78 Score=36.43 Aligned_cols=64 Identities=13% Similarity=0.251 Sum_probs=44.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcC------CccEEEEEEccHHHHHHHHHhC-CCccc
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQK------GFCFGFVEFEEENAVQSAIEAS-PIVIS 355 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k------~~g~aFVeF~~~~~a~~Al~~~-~~~i~ 355 (461)
.-+|.|+.||..+|++++.+.++.+-.+.. ......+ ...-|||.|.+.+++..-.+.. +..+-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~--~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDY--FEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEE--CCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccce--EEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 458999999999999998877765544322 1111111 2345799999999999888877 65543
No 299
>3fgy_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.59A {Burkholderia xenovorans LB400} SCOP: d.17.4.0
Probab=83.53 E-value=4.6 Score=32.85 Aligned_cols=54 Identities=7% Similarity=-0.004 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC
Q 012554 15 ANAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL 68 (461)
Q Consensus 15 g~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l 68 (461)
-.+.|+.||..++ .+.+.|..+|.++..+...+.........|.++|.+.+..+
T Consensus 7 ~~~~v~~~~~a~~~~d~~~~~~l~a~D~~~~~p~~~p~~g~~~G~~~i~~~~~~~ 61 (135)
T 3fgy_A 7 NVQIVKDFFAAMGRGDKKGLLAVSAEDIEWIIPGEWPLAGTHRGHAALAALLQKA 61 (135)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHTEEEEEEEEECSSSTTCEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhcCCCeEEEEcCCCccceEEeCHHHHHHHHHHH
Confidence 4567889999888 57899999999999876655211123578999999888766
No 300
>2f86_B Hypothetical protein K11E8.1D; UNC-43, oligomerization domain, transferase; 2.64A {Caenorhabditis elegans} SCOP: d.17.4.7
Probab=82.66 E-value=10 Score=31.97 Aligned_cols=112 Identities=8% Similarity=0.033 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCCCCcceEEEEEeeeeeeCCCcEEEE-
Q 012554 16 NAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALHYGEFSAEITTVDAQESYNGGVIVL- 93 (461)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~I~~~d~q~s~~~~ilv~- 93 (461)
..++++|...++ .+-+.+.++|.++-++--....| ..+.|++.+...+..........+|.+...+...++..++.
T Consensus 15 ~~~~~~~~~Ai~~gD~~~~~~l~~~dv~~Fd~~~~g--~~~~g~~~~r~~f~~~~~~~~~~~~~~~~V~~~g~d~Av~~y 92 (143)
T 2f86_B 15 VRVTQTLLDAISCKDFETYTRLCDTSMTCFEPEALG--NLIEGIEFHRFYFDGNRKNQVHTTMLNPNVHIIGEDAACVAY 92 (143)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHEEEEEEEECGGGTT--CCEETTHHHHTTSSSCSCCSCEEEEEEEEEEEETTTEEEEEE
T ss_pred HHHHHHHHHHHHccCHHHHHHhcCCCEEEEccCcCC--ccccCHHHHHHHHhcccCCcceeEEEcceEEEeCCCEEEEEE
Confidence 367788888877 88999999999887663211111 25778888775433222334567777777776653433322
Q ss_pred --EEEEEEcCCCC-cceeEEEEEEEEeCCeEEEEcceEE
Q 012554 94 --VTGYLTGKDSV-RRKFSQSFFLAPQDKGYFVLNDVFR 129 (461)
Q Consensus 94 --V~G~~~~~~~~-~~~F~q~F~L~~~~~~y~v~nd~fr 129 (461)
.++.+..++.+ ...+--|.++..++++|.|...=+.
T Consensus 93 ~~~~~~~~~~G~~~~~~~r~T~V~~k~~g~WkivH~H~S 131 (143)
T 2f86_B 93 VKLTQFLDRNGEAHTRQSQESRVWSKKQGRWVCVHVHRS 131 (143)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred EeeeeeccCCCCeeeEEEEEEEEEEEeCCcEEEEEEeEC
Confidence 22333223332 3567888899999999999875443
No 301
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=82.18 E-value=0.7 Score=39.24 Aligned_cols=45 Identities=7% Similarity=-0.027 Sum_probs=37.7
Q ss_pred EEEeCcCCccEEEEEEccHHHHHHHHHhC--CCcccCceeEEeecccc
Q 012554 322 IQVKTQKGFCFGFVEFEEENAVQSAIEAS--PIVISGHRVVVEPKKST 367 (461)
Q Consensus 322 v~~~~~k~~g~aFVeF~~~~~a~~Al~~~--~~~i~g~~i~V~~a~~~ 367 (461)
|.++..+.+|+++|+|.+.+.|++||+.+ +..|+| .|.+..+..+
T Consensus 5 l~l~g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 5 LILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp EEECCSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred eeeccccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 45555568899999999999999999877 788999 9999987764
No 302
>3g0k_A Putative membrane protein; snoal-like polyketide cyclase, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.30A {Novosphingobium aromaticivorans}
Probab=82.18 E-value=21 Score=29.89 Aligned_cols=65 Identities=11% Similarity=0.104 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHHH-HHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC--CCCcceEEEEEe
Q 012554 10 TADIVANAFVHQYYL-ILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL--HYGEFSAEITTV 80 (461)
Q Consensus 10 ~~~~vg~~Fv~~YY~-~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~I~~~ 80 (461)
...+--.+.|+.||. .|+ .+.+.|..||.++...-.++ ...|.+.|.+.+..| .|.+.+++|..+
T Consensus 24 ~~~~~nk~lV~~f~~~a~~~~D~~~~~~~~a~D~v~h~P~------~~~G~e~~~~~~~~~~~~~pd~~~~i~~i 92 (148)
T 3g0k_A 24 AEEQANHDLVIEMYNKVLIAMDSSAVDRYIAPGYVQHSSL------AEPSVEALKGFLDRVRAESPDARQTIHRS 92 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTCGGGGGGTEEEEEEECCSS------SCSSHHHHHHHHHHHHHHCCSCEEEEEEE
T ss_pred ccHHHHHHHHHHHHHHHHhcCCHHHHHHhcCcCeEEcCCC------CCCCHHHHHHHHHHHHHhCCCceEEEEEE
Confidence 345566789999999 776 78899999999885443322 358999998888765 255667776543
No 303
>3rga_A Epoxide hydrolase; NTF2-like, epoxide-opening cyclic ether formation, isomerase; HET: LSB ILD; 1.59A {Streptomyces lasaliensis}
Probab=75.78 E-value=7.8 Score=36.69 Aligned_cols=51 Identities=10% Similarity=0.105 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC
Q 012554 15 ANAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL 68 (461)
Q Consensus 15 g~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l 68 (461)
...+|+.||..|+ .+.+.|..+|.++.++..+-. .....|+++|..++..+
T Consensus 8 ~~~~v~~~~~~~~~~D~~~l~~l~a~Dav~~~P~~---~~~~~Gr~ai~~~~~~~ 59 (283)
T 3rga_A 8 RKEVALEYCRRVNAGELEGVLQLFAPDARLVDPLG---TEPVVGRAALAARLAPA 59 (283)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHTEEEEEEEECSSS---SCCEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHhcCCCEEEECCCC---CCCcCcHHHHHHHHHHH
Confidence 5678999999998 889999999999999886521 12689999999999865
No 304
>3ejv_A Uncharacterized protein with cystatin-like fold; structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.40A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID} SCOP: d.17.4.28
Probab=75.24 E-value=40 Score=29.20 Aligned_cols=72 Identities=8% Similarity=0.020 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHc-cCchhhhccccCCceeecc---C-CCCcccccccHHHHHHHHHhCC-----CCcceEEEEEeeee
Q 012554 14 VANAFVHQYYLILH-QSPQLVHRFYQDISKLGRP---E-ENGAMSITTTMQAINDKILALH-----YGEFSAEITTVDAQ 83 (461)
Q Consensus 14 vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~---~-~~~~~~~~~g~~~I~~~~~~l~-----~~~~~~~I~~~d~q 83 (461)
--..++..|...|+ .+.+.|..+|.++..+.+. + ..+......|.++|.+.+...- |..+.|.|.++...
T Consensus 27 ~I~~l~~~y~~~~D~~d~d~~~~lFt~D~~~~~~~~~Gg~~g~~~~~~Gr~aI~~~~~~~~~~~~~~~~t~H~~~n~~I~ 106 (179)
T 3ejv_A 27 IILNVLGQYTRAHDRRDPDAMAALFAPEATIEIVDAVGGASRSISRLEGRDAIRVAVRQMMAPHGYRAWSQNVVNAPIIV 106 (179)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEEEEECGGGCCEEEEEEESHHHHHHHHHHSSCCCCTTEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCHHHHHhhcCCceEEEEeccCCCcCCCcceecCHHHHHHHHHHhhcccccccceEEEcCCCEEE
Confidence 34677888999998 7899999999999987653 2 1122346889999999987652 44567777776654
Q ss_pred ee
Q 012554 84 ES 85 (461)
Q Consensus 84 ~s 85 (461)
-.
T Consensus 107 vd 108 (179)
T 3ejv_A 107 IE 108 (179)
T ss_dssp EE
T ss_pred Ec
Confidence 33
No 305
>3f8h_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Silicibacter SP}
Probab=74.31 E-value=32 Score=28.66 Aligned_cols=48 Identities=6% Similarity=-0.005 Sum_probs=38.1
Q ss_pred HHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC
Q 012554 17 AFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL 68 (461)
Q Consensus 17 ~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l 68 (461)
+.|+.||..|+ .+.+.|..+|.++..+.... .....|.++|.+.+..+
T Consensus 22 ~~v~~~~~a~n~~D~~~l~~l~a~D~v~~~~~----~~~~~G~e~i~~~~~~~ 70 (150)
T 3f8h_A 22 DTIARYFDAFNAGDTDGMLACLSEDVAHHVNE----GNIRVGKEKFAAFCAHM 70 (150)
T ss_dssp CHHHHHHHHHHHTCHHHHHTTEEEEEEEEEET----TEEEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHcCCCeEEeCCC----CcceeCHHHHHHHHHHH
Confidence 46899999998 78899999999999843221 12689999999988855
No 306
>3mso_A Steroid delta-isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.57A {Pseudomonas aeruginosa}
Probab=74.17 E-value=9.7 Score=31.92 Aligned_cols=52 Identities=8% Similarity=0.032 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC
Q 012554 14 VANAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL 68 (461)
Q Consensus 14 vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l 68 (461)
....+++.||..++ .+.+.|..+|.++.++.-+-. ...+.|.+.|..+|..+
T Consensus 10 ~~~~~~~~~~~a~~~~D~~~l~~l~a~D~v~~~P~~---~~~~~G~~~v~~~~~~~ 62 (143)
T 3mso_A 10 NAAATLAEWHGLIARRDLSGLPRLLHPDAVFRSPMA---HKPYAGAPVVSMILNTV 62 (143)
T ss_dssp HHHHHHHHHHHHHHTTCCTTGGGGEEEEEEEECSSC---SSCEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHhcCCCEEEECCCC---CCCccCHHHHHHHHHHH
Confidence 45778999999888 778999999999999876431 13789999999998865
No 307
>3f40_A Uncharacterized NTF2-like protein; YP_677363.1, NTF2-like protein of unknown function, structural genomics; HET: MSE; 1.27A {Cytophaga hutchinsonii atcc 33406}
Probab=72.96 E-value=11 Score=30.16 Aligned_cols=49 Identities=6% Similarity=0.087 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCC
Q 012554 16 NAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALH 69 (461)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~ 69 (461)
.+.|+.||..++ .+.+.|..++.++..+...+. ...|.+++..++..+-
T Consensus 9 ~~~v~~f~~A~~~gD~~~l~~lla~Dvv~~~~~g-----~~~G~~~v~~~~~~~~ 58 (114)
T 3f40_A 9 RDLVLEFIHALNTENFPAAKKRLNENFTFNGPMG-----HREGSERYMNDMEKMK 58 (114)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHTEEEEEEEEETTE-----EEESHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHhcCCCeEEECCCC-----cccCHHHHHHHHHHHH
Confidence 456788888888 788999999999988776543 6789999999998774
No 308
>3grd_A Uncharacterized NTF2-superfamily protein; NP_977240.1, NTF2-superfamily protein with unknown function, structural genomics; HET: MSE; 1.25A {Bacillus cereus atcc 10987} SCOP: d.17.4.0
Probab=71.80 E-value=8.1 Score=31.29 Aligned_cols=65 Identities=9% Similarity=0.076 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHH-HHHhC--CCCcceEEEEEe
Q 012554 16 NAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAIND-KILAL--HYGEFSAEITTV 80 (461)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~-~~~~l--~~~~~~~~I~~~ 80 (461)
.+.|+.||..|+ .+.+.|..+|.++..+...+..-......|.++|.+ .+..| .|.++++.|..+
T Consensus 7 ~~~v~~~~~a~~~~D~~~~~~l~a~D~~~~~~~~~p~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (134)
T 3grd_A 7 LEIIRSTYEGSASSNAKHLAEALSEKVEWTEAEGFPYGGTYIGVEAIMENVFSRLGSEWNDYKASVNMY 75 (134)
T ss_dssp HHHHHTTTSSCHHHHHHHHHHHEEEEEEEEECTTSTTCEEEESHHHHHHHTHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCHHHHHHhcCCCeEEEecCCcccCcEEeCHHHHHHHHHHHHHhhccccccchhhe
Confidence 456888898887 567899999999998765542111135789999974 55544 244555555544
No 309
>3rga_A Epoxide hydrolase; NTF2-like, epoxide-opening cyclic ether formation, isomerase; HET: LSB ILD; 1.59A {Streptomyces lasaliensis}
Probab=71.41 E-value=37 Score=31.88 Aligned_cols=56 Identities=9% Similarity=0.096 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCC
Q 012554 11 ADIVANAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALH 69 (461)
Q Consensus 11 ~~~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~ 69 (461)
..+-..++|+.||..|+ .+.+.|..+|.++..+..+-. .....|+++|.+++..+-
T Consensus 136 ~~~~~~~~v~~~~~a~~~~D~~~l~~l~a~D~v~~~P~~---~~~~~G~~ai~~~~~~~~ 192 (283)
T 3rga_A 136 DEERRKELAREHCLRINDGDVDGLLKLYSPRIRFEDPVG---SWTRTGLEALRAHATMAV 192 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEESSTT---SCEEESHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHhcCCCeEEECCCC---CCcccCHHHHHHHHHHhh
Confidence 34566789999999999 889999999999999876522 126899999999998663
No 310
>2k54_A Protein ATU0742; protein of unknown function, structural genomics, PSI-2, Pro structure initiative; NMR {Agrobacterium tumefaciens str} SCOP: d.17.4.29
Probab=69.32 E-value=40 Score=26.56 Aligned_cols=90 Identities=9% Similarity=0.044 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHc-cCchhhhccccCCceeec-cCCCCcccccccHHHHHHHHHhC-CCCcceEEEEEeeeeeeCCCcEEE
Q 012554 16 NAFVHQYYLILH-QSPQLVHRFYQDISKLGR-PEENGAMSITTTMQAINDKILAL-HYGEFSAEITTVDAQESYNGGVIV 92 (461)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~-~~~~~~~~~~~g~~~I~~~~~~l-~~~~~~~~I~~~d~q~s~~~~ilv 92 (461)
...|+.||..++ .+.+.|..+|.++..+.. .+. ....|.++|.+.+..+ ...+.+++|..+- .. ++.+
T Consensus 6 ~~~v~~~~~a~n~~D~~~~~~~~a~D~~~~~~~g~----~~~~G~~ai~~~~~~~~~~~~~~~~~~~~~--~~-gd~v-- 76 (123)
T 2k54_A 6 ELPVQKQLEAYNARDIDAFMAWWADDCQYYAFPAT----LLAGNAAEIRVRHIERFKEPDLYGELLTRV--IV-GNVV-- 76 (123)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHTEEEEEEEEETTTE----EEEESHHHHHHHHHHHTTCTTCEEEEEEEE--EE-TTEE--
T ss_pred HHHHHHHHHHHHhcCHHHHHhhcCCceEEEcCCCC----cccCCHHHHHHHHHHHcCCCCcEEEEEEEE--EE-CCEE--
Confidence 567999999998 678999999999987643 321 2478999999998764 2234455554432 22 3323
Q ss_pred EEEEEEEcC--CCC-cceeEEEEEE
Q 012554 93 LVTGYLTGK--DSV-RRKFSQSFFL 114 (461)
Q Consensus 93 ~V~G~~~~~--~~~-~~~F~q~F~L 114 (461)
.+...++.. +.. ...++..|.|
T Consensus 77 ~~~~~~~g~~~~~~~~~~~~~vf~v 101 (123)
T 2k54_A 77 IDHETVTRNFPEGKGEVDVACIYEV 101 (123)
T ss_dssp EEEEEEECCBTTBCCEEEEEEEEEE
T ss_pred EEEEEEEeECCCCceEEEEEEEEEE
Confidence 334444432 211 3456666666
No 311
>3g16_A Uncharacterized protein with cystatin-like fold; YP_001022489.1, protein of unknown function with cystatin-LI structural genomics; HET: MSE; 1.45A {Methylibium petroleiphilum PM1}
Probab=65.31 E-value=64 Score=27.50 Aligned_cols=67 Identities=7% Similarity=-0.070 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCC--CCcceEEEEEe
Q 012554 12 DIVANAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALH--YGEFSAEITTV 80 (461)
Q Consensus 12 ~~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~--~~~~~~~I~~~ 80 (461)
.+.-...|+.||..++ .+.+.|..|+.++..+-.+.. -......|.++|.+.+..+. + +.++.|..+
T Consensus 9 ~~~~~~~v~ry~~A~n~gD~d~l~~l~aeD~v~~~p~~-~p~~~~~Greai~~~f~~~~~~~-d~~~~~e~i 78 (156)
T 3g16_A 9 RAAMEKVIRTYYDGCNEADEAKMIACFVPEAVHYFPAG-MYGGAFRGAAQIAHRWRTAVETL-GSYWTIDAL 78 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECBTT-STTSCEESHHHHHHHHHHHHHHH-CEEEEEEEE
T ss_pred chhHHHHHHHHHHHHHcCCHHHHHHhcCCCEEEecCCC-CCCCCccCHHHHHHHHHHHHhhc-CceEEEEEE
Confidence 5667889999999999 778999999999998866431 00235789999999987652 3 334444443
No 312
>3ke7_A Putative ketosteroid isomerase; structural genomics, joint C structural genomics, JCSG, protein structure initiative; HET: MSE BCN; 1.45A {Parabacteroides distasonis atcc 8503}
Probab=59.32 E-value=74 Score=26.23 Aligned_cols=113 Identities=10% Similarity=0.045 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCCC-CcceEEEEEeeeeeeCCCcEE
Q 012554 14 VANAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALHY-GEFSAEITTVDAQESYNGGVI 91 (461)
Q Consensus 14 vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~~-~~~~~~I~~~d~q~s~~~~il 91 (461)
+..+-+..==..|+ .+++.+..+|.++.++--.-. ...+.|.++|..++..+.- ..|.++|.....|-..+-.++
T Consensus 15 ~~~~i~~~~~~~L~~gD~~~~~~lyapDvt~fDp~~---~~~~~G~~a~r~yf~~~~~~~~~~~ei~~p~V~v~gD~A~~ 91 (134)
T 3ke7_A 15 IPEMIISLEKEALASTDPMAFVELSDTDVIYFDPSL---ETKIEGLEQLRTYYKGMQLPPADHFDMIRPVVQVAQNIAVL 91 (134)
T ss_dssp HHHHHHHHHHHHHHCSCTTHHHHHEEEEEEEECTTC---SSCEESHHHHHHHHHHHCCCCCSEEEEEEEEEEEETTEEEE
T ss_pred HHHHHHHHhHHHHhCCCHHHHHHhcCCCEEEEcCCC---ccccCCHHHHHHHHHhcccCCcceEEEeCCeEEEeCceEEE
Confidence 33333433334444 889999999999987632211 2368899999999987532 336888988877775443333
Q ss_pred EEEEEEEEcCCCCcceeEEEEEEEEe-CCeEEEEcceEEee
Q 012554 92 VLVTGYLTGKDSVRRKFSQSFFLAPQ-DKGYFVLNDVFRYV 131 (461)
Q Consensus 92 v~V~G~~~~~~~~~~~F~q~F~L~~~-~~~y~v~nd~fr~~ 131 (461)
-.+.- ....+ .....--|+++... +++|.|.+.=..++
T Consensus 92 ~y~l~-~~~~~-~~~~~r~T~V~~r~~dG~W~ivH~H~S~~ 130 (134)
T 3ke7_A 92 TFNLD-SYLSD-KVIKWNCTEVYRRNPDNQWKIIQTHWSYV 130 (134)
T ss_dssp EEEEE-EEETT-EEEEEEEEEEEEECTTSBEEEEEEEEEES
T ss_pred EEEEE-EeeCC-CcEEEEEEEEEEEcCCCcEEEEEEeeccc
Confidence 21111 11122 24567889999999 89999988665544
No 313
>3eby_A Beta subunit of A putative aromatic-ring-hydroxyl dioxygenase; YP_001165631.1; 1.75A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID} SCOP: d.17.4.4
Probab=58.41 E-value=71 Score=27.02 Aligned_cols=130 Identities=13% Similarity=0.041 Sum_probs=66.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHc-cCchhhhccccCCceeeccC---CC-Cc---ccccccHHHHHHHHHhC----
Q 012554 1 MATPLHQAPTADIVANAFVHQYYLILH-QSPQLVHRFYQDISKLGRPE---EN-GA---MSITTTMQAINDKILAL---- 68 (461)
Q Consensus 1 ma~~~~~~~~~~~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~---~~-~~---~~~~~g~~~I~~~~~~l---- 68 (461)
|++.......-..--..|+-.|-.+|+ .+-+.+..+|.++..+.... .+ |. .....+...|...+..|
T Consensus 2 ~~~~~~~~~~~~~~I~~ll~rya~~lD~~d~d~w~~lft~D~~y~~p~~~~~~~~~~~~~~~~~~~~~l~~rv~~l~~~~ 81 (163)
T 3eby_A 2 MSVAAEVAQVAQSAIDDFNAAYGLCLDDDRLEQWPTLFVDDCLYQVIARENVDNGLPAAVMYCDSKGMLADRVVALRKAN 81 (163)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHTTCGGGTGGGEEEEEEEEEEEGGGGGSSSCCEEEEESSHHHHHHHHHHHHHTC
T ss_pred CccccCCCHHHHHHHHHHHHHHHHHhccccHHHHHHhhcCCEEEEeeccccCCCCCCcEEEEcCCHHHHHHHHHHhhccC
Confidence 444333322223334679999999999 77889999999999774432 11 11 11235777787776554
Q ss_pred --CCCcceEEEEEeeeeeeCCCcEEEEEEEEEE-cC-CCCccee-E--EEEEEEEeCCeEEEEcceEEe
Q 012554 69 --HYGEFSAEITTVDAQESYNGGVIVLVTGYLT-GK-DSVRRKF-S--QSFFLAPQDKGYFVLNDVFRY 130 (461)
Q Consensus 69 --~~~~~~~~I~~~d~q~s~~~~ilv~V~G~~~-~~-~~~~~~F-~--q~F~L~~~~~~y~v~nd~fr~ 130 (461)
+...+.|-|.++-.....++.+.+...-.+. .. +.....| + =...|...+++|.|..=...+
T Consensus 82 ~~p~~rt~H~vsn~~i~~~~~d~a~v~s~~~~~~~~~~~~~~~~~~G~y~D~l~r~~~gwri~~R~v~l 150 (163)
T 3eby_A 82 VFPEHFNRHLIGRAVITGVEGDQVSAEASYVVFQTRNDGETRIYNAGKYVDRFDLSGGTVRLKSRTCIY 150 (163)
T ss_dssp ----CEEEEEECCCEEEEEETTEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEECCTTCCEEEEEEEEE
T ss_pred CCCCcceeEEEcCEEEEecCCCEEEEEEEEEEEEEcCCCccEEEEEEEEEEEEEEECCEEEEEEEEEEe
Confidence 4456688888766633334434333222211 11 1222212 1 122344456667766554443
No 314
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=57.52 E-value=18 Score=37.41 Aligned_cols=54 Identities=24% Similarity=0.301 Sum_probs=42.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcCCCeeEeEEEEeCcCCccEEEEEEccHHHHHHHHHhC
Q 012554 290 GPSIYLKGLPPSATHALLENEFRKFGTIRAGGIQVKTQKGFCFGFVEFEEENAVQSAIEAS 350 (461)
Q Consensus 290 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~ 350 (461)
..-++|+ ++..+...+|.++|+.||.+. |.... ...+||.|.+.+.+..++..+
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~---V~wid---dt~a~V~~~~~~~a~~~l~~~ 493 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQ---ISWID---DTSAFVSLSQPEQVQIAVNTS 493 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCE---EEECS---SSEEEEECSCHHHHHHHHHHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEE---EEEEc---CCeEEEEECCHHHHHHHHHHH
Confidence 4567776 888888999999999999664 43332 235899999999999988875
No 315
>2imj_A Hypothetical protein DUF1348; alpha beta protein, structural genomics, PSI-2, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} SCOP: d.17.4.23
Probab=54.30 E-value=16 Score=31.02 Aligned_cols=89 Identities=13% Similarity=0.032 Sum_probs=57.9
Q ss_pred CCCCCCC----CCCHHHHHHHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHH-----hCCC
Q 012554 1 MATPLHQ----APTADIVANAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKIL-----ALHY 70 (461)
Q Consensus 1 ma~~~~~----~~~~~~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~-----~l~~ 70 (461)
|+.+++. +|-..+.|..=|+.=-..-+ ++|+.+..-|+.+|..-=.++ .++|+++|..+|. .|++
T Consensus 1 m~~~~~~rpplPPFt~EtA~~KVr~AEDaWNsrdP~rValAYT~Ds~WRNR~e-----F~~GR~eI~~FLtrKW~rE~dY 75 (166)
T 2imj_A 1 MSSNAQVRPPLPPFTRESAIEKIRLAEDGWNSRDPERVSLAYTLDTQWRNRAE-----FAHNREEAKAFLTRKWAKELDY 75 (166)
T ss_dssp ----CCCCSSCSSCCHHHHHHHHHHHHHHHTTTCHHHHHTTEEEEEEEEETTE-----EECSHHHHHHHHHHHHHHSEEE
T ss_pred CCCCCcCCCCCCCCCHHHHHHHHHHHHhhhcccChHHHhhccCCCCceecccc-----ccCcHHHHHHHHHHHHHhhccc
Confidence 5555555 45567777777887777777 899999999999997643333 8999999999997 3444
Q ss_pred CcceEEEEEeeeeeeCCCcEEEEEEEEEEc
Q 012554 71 GEFSAEITTVDAQESYNGGVIVLVTGYLTG 100 (461)
Q Consensus 71 ~~~~~~I~~~d~q~s~~~~ilv~V~G~~~~ 100 (461)
. -|+.+=+ -.+|-|.|-..-+..-
T Consensus 76 r----LiKELwa--f~~nRIAVRFaYEw~D 99 (166)
T 2imj_A 76 R----LIKELWA--FTDNRIAVRYAYEWHD 99 (166)
T ss_dssp E----EEEEEEE--EETTEEEEEEEEEEEC
T ss_pred h----hhhhhhe--ecCCeEEEEEEeEEec
Confidence 3 2222222 1256677766655543
No 316
>3lyg_A NTF2-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE GOL; 1.61A {Colwellia psychrerythraea}
Probab=51.67 E-value=18 Score=29.35 Aligned_cols=49 Identities=14% Similarity=0.022 Sum_probs=39.6
Q ss_pred HHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHH----HHHhCC
Q 012554 18 FVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAIND----KILALH 69 (461)
Q Consensus 18 Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~----~~~~l~ 69 (461)
-|+.-.+.|. .+-+.|...|.+++.|.|+++.+ .+.|++.|.. .+..||
T Consensus 7 iVqrlW~al~AgD~D~l~adyaeDaV~i~P~sa~---vl~GR~~~r~a~~~L~~~lP 60 (120)
T 3lyg_A 7 IVQRGWEALGAGDFDTLVTDYVEKMIFIMPGQAD---VLKGRQAFRSALDNLGEILP 60 (120)
T ss_dssp HHHHHHHHHHHTCHHHHGGGEEEEEEEECSSTTC---EEESHHHHHHHHTTHHHHSC
T ss_pred HHHHHHHHHhcCCHHHHHHhcccCeEEEccCccc---eeecHHHHHHHHHHHHhhCC
Confidence 3566666676 78899999999999999997654 8999999999 445555
No 317
>3f8x_A Putative delta-5-3-ketosteroid isomerase; structural genomics, joint center for structural genomics; HET: MSE; 1.55A {Pectobacterium atrosepticum SCRI1043}
Probab=48.81 E-value=20 Score=30.27 Aligned_cols=53 Identities=6% Similarity=0.030 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC
Q 012554 13 IVANAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL 68 (461)
Q Consensus 13 ~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l 68 (461)
.....+++.|+..++ .+.+.|..+|.++.++.-+-. ...+.|.+.|..+|..+
T Consensus 20 ~~~~~~l~~f~~a~~~gD~~aL~~LlA~Dvv~~~P~~---~~~~~G~~av~~~~~~~ 73 (148)
T 3f8x_A 20 AAVQSGLQEWHRIIAEADWERLPDLLAEDVVFSNPST---FDPYHGKGPLMVILPAV 73 (148)
T ss_dssp HHHHHHHHHHHHHHHHTCGGGSGGGEEEEEEEECSSC---SSCEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHhCCCEEEECCCC---CCCcCCHHHHHHHHHHH
Confidence 667889999999988 678999999999999875421 13688999999998765
No 318
>3ub1_A ORF13-like protein; NTF2-like, transport protein; HET: MSE; 1.80A {Clostridium perfringens}
Probab=47.93 E-value=1.5e+02 Score=27.53 Aligned_cols=86 Identities=14% Similarity=0.229 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHc-cCchhhhccccCCceee-ccCCCCcccccccHHHHHHHHHhCCCCcceEEEEEeeeeeeCCCcEE
Q 012554 14 VANAFVHQYYLILH-QSPQLVHRFYQDISKLG-RPEENGAMSITTTMQAINDKILALHYGEFSAEITTVDAQESYNGGVI 91 (461)
Q Consensus 14 vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~-~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~I~~~d~q~s~~~~il 91 (461)
=...|+..||.... .+.++|..|..+.+.+. ..|. +-| .+|.++.....-+..|.
T Consensus 156 ~i~~FL~tFFk~Y~sa~~~eL~yy~~~~~~l~gL~g~-------------------~~f----~~l~~~~vy~~~~~~v~ 212 (261)
T 3ub1_A 156 KITDSVSQFFKAYYEQNQTQIDYFLVDGADIKGAGQK-------------------FSF----NKIDRINIYKLSDKEFL 212 (261)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHTTBCTTCCCCCCCSC-------------------CEE----EEEEEEEEEEEETTEEE
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHhcCCCcccCCCCc-------------------EEE----EEeccEEEecCCCcEEE
Confidence 45689999999986 67788887777777653 2221 112 23333332222234466
Q ss_pred EEEEEEEEcCCCCcceeEEEEEEE--EeCCeEEEEc
Q 012554 92 VLVTGYLTGKDSVRRKFSQSFFLA--PQDKGYFVLN 125 (461)
Q Consensus 92 v~V~G~~~~~~~~~~~F~q~F~L~--~~~~~y~v~n 125 (461)
+.|+ |+..+.... ..|.|.|. +++++|||..
T Consensus 213 a~V~--v~~~d~~t~-~~e~y~L~L~k~~~~w~V~~ 245 (261)
T 3ub1_A 213 AIVD--LNVDSFGNA-IKQGFNLTVVQEGDKFLVKT 245 (261)
T ss_dssp EEEE--EEEEETTEE-EEEEEEEEEEEETTEEEECC
T ss_pred EEEE--EEEcCCCce-EEEEEEEEEEECCCeEEEEe
Confidence 5555 444333222 48888665 5578999864
No 319
>3cwz_B RAB6IP1, RAB6-interacting protein 1; RAB small GTPase, RAB-binding domain, guanosine 5' triphosphate, RUN, RPIP8, UNC-14, nesca PLAT; HET: GTP; 3.20A {Mus musculus}
Probab=46.02 E-value=28 Score=34.46 Aligned_cols=78 Identities=17% Similarity=0.182 Sum_probs=50.3
Q ss_pred HHHHHHHHHH---------HHHHHccCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhCC---C---------
Q 012554 12 DIVANAFVHQ---------YYLILHQSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILALH---Y--------- 70 (461)
Q Consensus 12 ~~vg~~Fv~~---------YY~~l~~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l~---~--------- 70 (461)
---|+.|++. |...|-.+++.|.+||.+.+.|...+. ...|...|..|+ |
T Consensus 175 ~GrgRAWiRlaLne~~L~~yL~~ll~~~~~l~~~Y~~~A~L~~~Ee---------~~~il~~L~gLn~vDf~~f~~~~Tt 245 (384)
T 3cwz_B 175 VGKARAWVRLSMEKKLLSRHLKQLLSDHELTKKLYKRYAFLRCDDE---------KEQFLYHLLSFNAVDYFCFTNVFTT 245 (384)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTCHHHHHHHBCTTSTTTCHHH---------HHHHHHHHGGGGSSCCCTTTTTCTT
T ss_pred CcchhHHHHHHHhcchHHHHHHHHHhCchhhhhhcccchhhcCcch---------hhhhhhhcccccccchhhccccccc
Confidence 3457788775 999999999999999999988864332 334544455442 1
Q ss_pred Ccc--eEEEEEeeeee--eCCCcEEEEEEEEE
Q 012554 71 GEF--SAEITTVDAQE--SYNGGVIVLVTGYL 98 (461)
Q Consensus 71 ~~~--~~~I~~~d~q~--s~~~~ilv~V~G~~ 98 (461)
..| ++.|.|=+.-. -.+..|.|++.|..
T Consensus 246 t~~~Y~V~V~TG~~~gaAGT~anV~I~L~G~~ 277 (384)
T 3cwz_B 246 ILIPYHILIVPSKKLGGSMFTANPWICISGEL 277 (384)
T ss_dssp SEEEEEEEEEECCCCCSCCCCSCEEEEEEESS
T ss_pred cceeEEEEEEeCCCCCCCCCCCcEEEEEEeCC
Confidence 123 44455544332 12345999999875
No 320
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=43.35 E-value=5 Score=39.57 Aligned_cols=13 Identities=23% Similarity=0.273 Sum_probs=9.3
Q ss_pred CCCHHHHHHHHhc
Q 012554 301 SATHALLENEFRK 313 (461)
Q Consensus 301 ~~te~~L~~~F~~ 313 (461)
.+++++|+++...
T Consensus 228 ~vt~~~l~~i~~~ 240 (358)
T 2pk2_A 228 TVTLELLDELTHE 240 (358)
T ss_dssp SCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 4688888877654
No 321
>4gb5_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, snoal-like domain, unknown function; HET: PGE; 1.55A {Kribbella flavida}
Probab=42.99 E-value=1e+02 Score=25.48 Aligned_cols=69 Identities=13% Similarity=0.062 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHccCc-hhh-hccccCCceeeccCCCCcccccccHHHHHHHHHhC--CCCcceEEEEEeeeee
Q 012554 16 NAFVHQYYLILHQSP-QLV-HRFYQDISKLGRPEENGAMSITTTMQAINDKILAL--HYGEFSAEITTVDAQE 84 (461)
Q Consensus 16 ~~Fv~~YY~~l~~~p-~~l-~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~I~~~d~q~ 84 (461)
...+..|-..++..- +.| ..||.+++.+-+....|......|.++|...+... .+..++|.|.++-..-
T Consensus 14 ~~L~~rY~~~~D~~d~~~l~~~~ft~Da~~d~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~t~H~~~n~~I~v 86 (159)
T 4gb5_A 14 IELFGRYADIADLKEFTDLPRRVHTDPLTIDFESVTGMPPMTVPLSDYGAALRASFGAFSATHHAITGHVVTI 86 (159)
T ss_dssp HHHHHHHHHHHHTTCCSSHHHHHEEEEEEEECHHHHCCCCEEECHHHHHHHHHHHHTTCSEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCHHHHHHhhCcCCEEEEecCCCCCcccccHHHHHHHHHHHhccCCceEEEecCCceEEE
Confidence 356788999998554 666 57999999886533223333677899998887643 3555577777655543
No 322
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=41.00 E-value=21 Score=26.17 Aligned_cols=69 Identities=13% Similarity=0.167 Sum_probs=39.1
Q ss_pred EEEEcCC-CCCCCHHHHHHHHhcCCCeeEe---EEEEeCcCCccEEEEEEccHHHHHHHHHhC-CCcccCceeEEeecc
Q 012554 292 SIYLKGL-PPSATHALLENEFRKFGTIRAG---GIQVKTQKGFCFGFVEFEEENAVQSAIEAS-PIVISGHRVVVEPKK 365 (461)
Q Consensus 292 ~lfV~nL-p~~~te~~L~~~F~~~G~i~~~---~v~~~~~k~~g~aFVeF~~~~~a~~Al~~~-~~~i~g~~i~V~~a~ 365 (461)
+|||..= -..+...+|..++..-+.|..- .|.+ ...|.||+-.. +.+..++..+ ...+.|+.++|+.++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i----~d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITI----MDNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEE----CSSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEE----eCCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 4566311 2346777888888765554321 1222 33478888854 4566777777 788999999998764
No 323
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=39.13 E-value=6.3 Score=38.80 Aligned_cols=9 Identities=56% Similarity=0.837 Sum_probs=5.2
Q ss_pred hhccccCCc
Q 012554 33 VHRFYQDIS 41 (461)
Q Consensus 33 l~~fY~~~s 41 (461)
+++||...+
T Consensus 66 ~dRFl~~~s 74 (358)
T 2pk2_A 66 MHRFYMIQS 74 (358)
T ss_dssp HHHHTTTSC
T ss_pred HHHHHhcCC
Confidence 456666554
No 324
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=35.78 E-value=8.5 Score=35.17 Aligned_cols=11 Identities=9% Similarity=0.009 Sum_probs=6.4
Q ss_pred EEEEccHHHHH
Q 012554 334 FVEFEEENAVQ 344 (461)
Q Consensus 334 FVeF~~~~~a~ 344 (461)
.|.|.......
T Consensus 143 ~V~~a~~~~~~ 153 (229)
T 3q2s_C 143 VVTPVNKQFLS 153 (229)
T ss_dssp EEEECCHHHHH
T ss_pred EEEECCCCccc
Confidence 57776655433
No 325
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=32.76 E-value=13 Score=31.25 Aligned_cols=11 Identities=9% Similarity=0.166 Sum_probs=4.8
Q ss_pred cHHHHHHHHHh
Q 012554 339 EENAVQSAIEA 349 (461)
Q Consensus 339 ~~~~a~~Al~~ 349 (461)
+.+++...+..
T Consensus 52 t~~~l~~~F~~ 62 (156)
T 1h2v_Z 52 TEEQIYELFSK 62 (156)
T ss_dssp CHHHHHHHHGG
T ss_pred CHHHHHHHHHh
Confidence 34444444443
No 326
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=23.87 E-value=2.2e+02 Score=24.66 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=36.2
Q ss_pred EEEEcCCCC-C--------CCHHHHHHHH--hcCCCeeEeEEEEeCcCCccEEEEEEcc-HHHHHHHHHh
Q 012554 292 SIYLKGLPP-S--------ATHALLENEF--RKFGTIRAGGIQVKTQKGFCFGFVEFEE-ENAVQSAIEA 349 (461)
Q Consensus 292 ~lfV~nLp~-~--------~te~~L~~~F--~~~G~i~~~~v~~~~~k~~g~aFVeF~~-~~~a~~Al~~ 349 (461)
...|-|++. . .+..+|++.| ..|..++-. .........|++.|+|.+ ......|+..
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~-~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~f 82 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVR-PLWNYLGHSGTAIVEFNKDWNGLHNGLLF 82 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEE-EEECSSBEEEEEEEECCSSHHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeE-ecccCCCCceeEEEEecCChHHHHHHHHH
Confidence 345566665 1 3457899977 999988742 222222267899999974 5566666644
No 327
>2b1x_B Naphthalene dioxygenase small subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: d.17.4.4 PDB: 2b24_B
Probab=21.69 E-value=3.5e+02 Score=22.53 Aligned_cols=123 Identities=11% Similarity=0.043 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHc-cCchhhhccccCCceeecc---CCC-C-------cc-cccccHHHHHHHHHhC---------
Q 012554 11 ADIVANAFVHQYYLILH-QSPQLVHRFYQDISKLGRP---EEN-G-------AM-SITTTMQAINDKILAL--------- 68 (461)
Q Consensus 11 ~~~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~---~~~-~-------~~-~~~~g~~~I~~~~~~l--------- 68 (461)
...--..|+-.|-.+|+ .+-+.+..+|.++..+... +.. + .+ ....|.+.|...+..|
T Consensus 11 ~~~~I~~ll~rya~~lD~~d~d~w~~lft~D~~y~~p~~~~~~~~~~~d~~~~~~~~~~~~~~l~~rv~~l~~~~~~~~~ 90 (172)
T 2b1x_B 11 TVREITEWLYMEAELLDAGKYREWLALVTEDLSYVVPIRVTREREAVTDVVEGMTHMDDDADSMEMRVLRLETEYAWAED 90 (172)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEEEEECCCCTTSSCCEEEEEEEEEECHHHHHHHHHHHTSSCCGGGS
T ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHhccCCEEEEEEeecccccccccCCCcccEEEeCCHHHHHHHHHHHhcCcccccC
Confidence 34455789999999999 6778999999999976332 110 0 11 1224788888866543
Q ss_pred CCCcceEEEEEeeeeeeCC-CcEEEEEEEEEE-cC-CC-CcceeE-E-EEEEEEeCCeEEEEcceEEeecC
Q 012554 69 HYGEFSAEITTVDAQESYN-GGVIVLVTGYLT-GK-DS-VRRKFS-Q-SFFLAPQDKGYFVLNDVFRYVDD 133 (461)
Q Consensus 69 ~~~~~~~~I~~~d~q~s~~-~~ilv~V~G~~~-~~-~~-~~~~F~-q-~F~L~~~~~~y~v~nd~fr~~~~ 133 (461)
++..+.|.|.++-.....+ +.+.+...-.+. .. +. ....|. . ...|...+++|.|..=.+.+...
T Consensus 91 p~~~t~H~i~n~~I~~~~~~d~a~~~s~~~~~~~~~~~~~~~~~~G~y~D~l~r~~g~Wri~~R~v~ld~~ 161 (172)
T 2b1x_B 91 PPSRSRHFVTNVRVATGDSEDEFKVTSNLLLYRTRGDVATYDVLSGERTDVLRRAGDSFLMAKRVVLLDQT 161 (172)
T ss_dssp SCCEEEEEEEEEEEEECSSTTEEEEEEEEEEEEECTTCSCCEEEEEEEEEEEEEETTEEEEEEEEEEESCS
T ss_pred CCCeEEEEecCEEEEEecCCCEEEEEEEEEEEEEcCCCCceEEEEEEEEEEEEEcCCEEEEEEEEEEEcCC
Confidence 5667789898877765443 433332222211 12 22 112221 1 22355667889888877765544
No 328
>4giw_A RUN and SH3 domain-containing protein 1; NGF-TRKA signaling pathway, NF-KB pathway, signaling protein; 2.00A {Homo sapiens}
Probab=21.10 E-value=58 Score=28.87 Aligned_cols=47 Identities=9% Similarity=0.114 Sum_probs=32.8
Q ss_pred HHHHHHHccCchhhhccccCCceeec-cCCCCcccccccHHHHHHH---HHhCCCC
Q 012554 20 HQYYLILHQSPQLVHRFYQDISKLGR-PEENGAMSITTTMQAINDK---ILALHYG 71 (461)
Q Consensus 20 ~~YY~~l~~~p~~l~~fY~~~s~l~~-~~~~~~~~~~~g~~~I~~~---~~~l~~~ 71 (461)
..|..+|..+++.|.+||.+.|.|.. .+. .-...+.|... |..++|+
T Consensus 134 ~~~l~~l~~~~~~l~~~Y~~~a~lr~s~~~-----~~~l~~~l~~~L~~L~~l~F~ 184 (198)
T 4giw_A 134 ELWFSSLQEDAGLLSLMYMPTGFFSLARGG-----CPSLSTELLLLLQPLSVLTFH 184 (198)
T ss_dssp HHHHHHHHTCHHHHHHHBCTTSHHHHTSSB-----TTBHHHHHHHHHGGGGGSCCB
T ss_pred HHHHHHHHhChHHHHHHcCCchHhhccccc-----ChHHHHhhhccccccccccee
Confidence 46999999999999999999998842 221 22345555555 4455665
No 329
>3flj_A Uncharacterized protein conserved in bacteria WIT cystatin-like fold; YP_168589.1; HET: MSE; 2.00A {Silicibacter pomeroyi dss-3}
Probab=20.61 E-value=86 Score=26.67 Aligned_cols=50 Identities=8% Similarity=0.108 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHc-cCchhhhccccCCceeeccCCCCcccccccHHHHHHHHHhC
Q 012554 16 NAFVHQYYLILH-QSPQLVHRFYQDISKLGRPEENGAMSITTTMQAINDKILAL 68 (461)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~l~~~~~~~~~~~~~g~~~I~~~~~~l 68 (461)
..+++.|+..++ .+.+.|..+|.++.++.-+-. ...+.|.+.|...+..+
T Consensus 21 ~~~v~~f~~A~~~gD~~aL~~LlA~Dvv~~sP~~---~~p~~Gr~av~~~l~~~ 71 (155)
T 3flj_A 21 HPTIARMQEVVAKGDESLIHALLAEDVRFMPPTY---YKTWTGRDPVAAVLGHV 71 (155)
T ss_dssp CHHHHHHHHHHTTTCHHHHHTTEEEEEEEECSSS---SCCEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHhcCCCEEEECCCC---CCCcCCHHHHHHHHHHH
Confidence 357899999998 788999999999999875421 23788999999888754
Done!