Query 012555
Match_columns 461
No_of_seqs 147 out of 257
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 03:52:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012555.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012555hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2608 Endoplasmic reticulum 100.0 1E-135 2E-140 1039.9 25.1 399 22-441 3-436 (469)
2 PF04137 ERO1: Endoplasmic Ret 100.0 5E-123 1E-127 944.6 8.0 326 91-425 2-357 (357)
3 COG5061 ERO1 Oxidoreductin, en 100.0 2.5E-90 5.4E-95 690.0 13.5 320 71-422 22-365 (425)
4 PF13746 Fer4_18: 4Fe-4S diclu 39.6 16 0.00034 29.5 1.2 26 345-370 35-60 (69)
5 PF15264 TSSC4: Tumour suppres 37.3 13 0.00029 33.4 0.5 15 201-215 56-70 (115)
6 PF13124 DUF3963: Protein of u 29.3 91 0.002 23.0 3.5 29 261-289 7-36 (40)
7 PF14812 PBP1_TM: Transmembran 28.4 5.1 0.00011 34.0 -3.4 16 19-34 63-78 (81)
8 PRK12785 fliL flagellar basal 21.7 41 0.00089 31.6 0.8 34 1-34 1-36 (166)
9 PHA02450 hypothetical protein 19.7 28 0.0006 26.9 -0.6 24 203-229 4-27 (53)
10 PF13677 MotB_plug: Membrane M 18.4 86 0.0019 24.6 1.9 11 18-28 12-22 (58)
No 1
>KOG2608 consensus Endoplasmic reticulum membrane-associated oxidoreductin involved in disulfide bond formation [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-135 Score=1039.92 Aligned_cols=399 Identities=46% Similarity=0.817 Sum_probs=362.7
Q ss_pred cchHHHHHHHHHHHHhhhhhcccCCccccccCCCCcccccCCCCCCccccccccCcccchhhhhhhhhchhhHHhHHhhc
Q 012555 22 RGLWSVWAVIVVLFATAAVTTRTGSKIALFANNQTSCHCSSSSQDSVKYTGMVEDCCCDYETVDSVNGEVLHPLLQQLVT 101 (461)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c~~~~~~~~~~~G~vdDc~c~~etId~~N~~~l~P~L~~L~~ 101 (461)
||.|+++++.+|.+++ .++ +-|.. ..|||+ +.|+|+||+|+|+|||++|+++|+|+|+.|++
T Consensus 3 r~~~l~~l~~~~~l~~-~v~-------~~~~~--~~~~ck--------~~~~i~dc~c~~~~i~nln~~~i~~~lq~l~k 64 (469)
T KOG2608|consen 3 RAIALLGLIAAVKLIS-VVN-------TQFAS--SICFCK--------VDGIIEDCTCDYETIDNLNNEVIYPLLQKLLK 64 (469)
T ss_pred hhHHHHHHHHHHHHHH-hcc-------ccccc--cceeee--------cccccccCCCCHHHHHHhhccccchHHHHHhc
Confidence 4788777777777776 344 22222 689999 77999999999999999999999999999999
Q ss_pred CCCceEEeccCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCC-CccccccCCC-CcccccccchhhhcCc
Q 012555 102 TPFFRYFKAKLWCDCPFWPDDGMCRLRDCSVCECPENEFPEPFKKPFHILPS-DDLMCQEGKP-EATVDRTLDKRAFRGW 179 (461)
Q Consensus 102 t~fFRyfKVnL~~~CPFW~dd~~C~~~~C~V~~c~e~eiP~~wr~~~~~~~~-~~~~c~~~~~-~~~vd~tl~~~~~~~w 179 (461)
+||||||||||+++||||+||++|++++|+|++|+|+|||++||++.+++++ .-..|+++++ ++++|++++.++|..|
T Consensus 65 sdffryYkvnL~~~CpFW~Dd~~C~~r~C~V~~c~e~evPe~~k~~~~~~~~~~~~e~~~~~~~~~~~d~tl~dr~f~~w 144 (469)
T KOG2608|consen 65 SDFFRYYKVNLYRDCPFWPDDGMCLNRACSVEPCPEDEVPEGWKKSLGKYEPELCSECEDADSELGAKDRTLSDRAFLLW 144 (469)
T ss_pred ccchhheeccccCCCCCCCchhhhhhcCCccccCcccccchhhhhhhhccChhhhhhhhhccccccchhccccccccccc
Confidence 9999999999999999999999999999999999999999999997666655 2345655666 7899999999999999
Q ss_pred cccCCC-CCCCCCCCCCCceEeeCCCCCCCCCCCCCCChhhhHHHHHhhcCCCCC------C------CCCC--------
Q 012555 180 IETDNP-WTNDDETDNGEMTYVNLLLNPERYTGYTGPSARRIWDAVYTENCPKWM------A------IVPA-------- 238 (461)
Q Consensus 180 ~~~d~~-~~~dDe~d~~~~~YVDLl~NPERyTGY~G~~A~rIW~aIY~ENCF~~~------~------~~~C-------- 238 (461)
..+|+. ||.+|+.++++++||||++||||||||+|++|+|||++||+||||++. . .++|
T Consensus 145 ~~~d~~~~C~~dd~~s~~~~YVdLl~NPERyTGY~G~sa~rIW~sIYeeNCf~~~~~~~~~~~~~~~l~g~clEkrvfYr 224 (469)
T KOG2608|consen 145 DKHDDLSFCEVDDEESPEMVYVDLLLNPERYTGYKGPSAARIWRSIYEENCFKPDPLFDPNSIPYNWLEGLCLEKRVFYR 224 (469)
T ss_pred cccCCccceeecCCCCCCcEEEehhcChhhhcCCCCCCHHHHHHHHHHhhCCCCCcccCCcccccchhccccHHHHHHHH
Confidence 999998 899888888999999999999999999999999999999999999875 1 3677
Q ss_pred ----CCCCcCCCCCCC----CCC-CCCCChHHHHHHHhhhcchhhhHHHHHHHHHHHHHHhhhhhhhhccCCCCchhcHH
Q 012555 239 ----NPQTRPNPPAKT----RPL-RWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRAVTKATDYLEQAEYDTGNHEDDLK 309 (461)
Q Consensus 239 ----LHaSIsiHl~~~----~~~-~wgpNl~~F~~Rv~~~PeRl~NLYF~Yl~vLRAl~Ka~p~L~~~~f~tG~~~eD~~ 309 (461)
|||||+||||++ .++ .||||+++|+.||++||+||+||||+|++|+|||.||+|||++.+|+||+..||.+
T Consensus 225 LISGlHsSIstHl~~~~y~~~e~~~WgpNl~~f~~Rf~~~P~Rl~NlYF~Yll~lrAl~Ki~pyl~~~~~~tgn~~eD~e 304 (469)
T KOG2608|consen 225 LISGLHSSISTHLCSFYYLLEETKRWGPNLDLFRARFGNGPDRLRNLYFTYLLVLRALGKIAPYLEELDFYTGNVEEDAE 304 (469)
T ss_pred HHHHHHHHHHHHHhhhhcCCCcccccCcCHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhcchhhhhhhcccccccchH
Confidence 999999999995 444 69999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCccccccCCCCCccccccCCC-CcchHHHHHHHHhhhhhhhhcCccCCccccccchhhhHHHHHHHHhcc
Q 012555 310 TVSLMKQLLYNPKLQAACPLPFDEAKLWQGQ-SGPELKQQIQEQFRNISALMDCVGCEKCRLWGKLQVLGLGTALKILFS 388 (461)
Q Consensus 310 t~~lv~~Ll~~~~l~~sc~~~FDE~~lF~~~-~~~~LK~efr~~FrNISrIMDCVgCeKCRLWGKLQt~GLgTALKILFs 388 (461)
|+.+|.++++.++ +||.||||+.||+|+ .++.||++||+|||||||||||||||||||||||||+||||||||||+
T Consensus 305 ~k~~i~~il~~i~---~~p~hFdE~~~f~gd~~a~~lKe~fr~hFrnISrIMDCVgCdKCRLWGKlQt~GlGTALKILfs 381 (469)
T KOG2608|consen 305 TKSLLSDILSQIK---AFPKHFDEAELFAGDSEAPALKEEFRKHFRNISRIMDCVGCDKCRLWGKLQTQGLGTALKILFS 381 (469)
T ss_pred HHHHHHHHHHHHh---hCccccchHhhhcccccchhHHHHHHHHHHHHHHHHhhcCcchhhhhhhhhhhhhHHHHHHHhc
Confidence 9999999998765 699999999999999 789999999999999999999999999999999999999999999999
Q ss_pred ccCCcccc--ccccccchhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccccC
Q 012555 389 VEGQNHAA--QSQLQLQRNEVIALVNLLNRLSESVKIVHEMGPSIEKIMEKKISD 441 (461)
Q Consensus 389 ~~~~~~~~--~~~~~L~R~EiVALiNtf~RlS~SI~~v~~f~~~~~~~~~~~~~~ 441 (461)
..+.++.. ...++|+|+|||||+|||+|||+||++|++|+.++++.+.++..+
T Consensus 382 ~~~~~~~~~~s~~~~LtR~EvVAL~N~FgRLS~SV~~v~~fr~~~~~~~~~~~~k 436 (469)
T KOG2608|consen 382 VKDADPFTQLSESLELTRNEVVALVNTFGRLSESVREVDNFRSDLAPLLVGASLK 436 (469)
T ss_pred cCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhh
Confidence 87743221 233899999999999999999999999999999999999998776
No 2
>PF04137 ERO1: Endoplasmic Reticulum Oxidoreductin 1 (ERO1); InterPro: IPR007266 Members of this family are required for the formation of disulphide bonds in the endoplasmic reticulum [, ].; GO: 0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor, 0050660 flavin adenine dinucleotide binding, 0006467 protein thiol-disulfide exchange, 0055114 oxidation-reduction process, 0005789 endoplasmic reticulum membrane; PDB: 1RQ1_A 1RP4_A 3NVJ_A 3M31_A 3AHR_A 3AHQ_A.
Probab=100.00 E-value=4.8e-123 Score=944.64 Aligned_cols=326 Identities=50% Similarity=0.921 Sum_probs=264.5
Q ss_pred hhhHHhHHhhcCCCceEEeccCCCCCCCCCCC-CCCCCCCCccccCCCCCCCCCCCCCCCCCCCCccccccCCCCccccc
Q 012555 91 VLHPLLQQLVTTPFFRYFKAKLWCDCPFWPDD-GMCRLRDCSVCECPENEFPEPFKKPFHILPSDDLMCQEGKPEATVDR 169 (461)
Q Consensus 91 ~l~P~L~~L~~t~fFRyfKVnL~~~CPFW~dd-~~C~~~~C~V~~c~e~eiP~~wr~~~~~~~~~~~~c~~~~~~~~vd~ 169 (461)
+|+|+|++|+++||||||||||+++||||+++ ++|++++|+|++|+|+|||++||++.+.+.. ..|++++.+..+|.
T Consensus 2 ~i~p~L~~L~~~~fFRyfKVnL~k~CpFW~dd~~~C~~~~C~V~~c~e~eiP~~wr~~~~~~~~--~~~~~~~~~~~~~~ 79 (357)
T PF04137_consen 2 KIFPLLQELVKTDFFRYFKVNLYKECPFWNDDNGMCGSRDCAVCECDENEIPEPWRAELSKLEQ--SACEEGSDQSDLDR 79 (357)
T ss_dssp CCHHHHHHHHCSCCCCEEEEESS---SSSSSSSS---TCCCBB-TSS-GGS-GGGSHHHTS--T--TTECCHCCHCSGGG
T ss_pred cchHHHHHHhCCCCeEEEeecCCCCCCCCCCcccCcCCCCCeeeeCChhhcCcccccccccccc--hhcccccchhhhcC
Confidence 58999999999999999999999999999998 9999999999999999999999982233332 24444444556788
Q ss_pred ccch-hhhcCccccCCC--CCCCCCCCCCCceEeeCCCCCCCCCCCCCCChhhhHHHHHhhcCCCCCC-------CCCC-
Q 012555 170 TLDK-RAFRGWIETDNP--WTNDDETDNGEMTYVNLLLNPERYTGYTGPSARRIWDAVYTENCPKWMA-------IVPA- 238 (461)
Q Consensus 170 tl~~-~~~~~w~~~d~~--~~~dDe~d~~~~~YVDLl~NPERyTGY~G~~A~rIW~aIY~ENCF~~~~-------~~~C- 238 (461)
+++. .++..|..+++. ||..|++++++++||||++||||||||+|++|+|||++||+||||++.. +++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~c~~dd~~~~~~~YVDL~~NPEryTGY~G~~a~rIW~aIY~ENCF~~~~~~~~~~~~~~C~ 159 (357)
T PF04137_consen 80 TLSDCDEFCDWEDHDDSDDFCDLDDESSEEGVYVDLLLNPERYTGYSGPSAHRIWRAIYEENCFKPGSPSDPSWLDGMCL 159 (357)
T ss_dssp SBGHCCCCCCCHHCCCCTTHHHHTT---TTEEEEECCCS------B-CHHHHHHHHHHHCT--B-TTSTTH-------HC
T ss_pred ChhhhhhhcCccccccchhcCcCCCCCCCCceEEEcccCcccccCCCCCcHHHHHHHHHHHhCCCCCccccccccccccH
Confidence 8775 678888887652 7765655668999999999999999999999999999999999997654 2678
Q ss_pred -----------CCCCcCCCCCCC----CC---CCCCCChHHHHHHHhhhcchhhhHHHHHHHHHHHHHHhhhhhhhhccC
Q 012555 239 -----------NPQTRPNPPAKT----RP---LRWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRAVTKATDYLEQAEYD 300 (461)
Q Consensus 239 -----------LHaSIsiHl~~~----~~---~~wgpNl~~F~~Rv~~~PeRl~NLYF~Yl~vLRAl~Ka~p~L~~~~f~ 300 (461)
||||||||||++ .+ |.||||+++|++|||+|||||+||||+|+||||||+||+|||.+++|+
T Consensus 160 EkrvfyrlISGlHaSIs~Hl~~~y~~~~~~~~g~w~pNl~~F~~R~g~~peRl~NLYF~y~~~lRAl~K~~p~l~~~~~~ 239 (357)
T PF04137_consen 160 EKRVFYRLISGLHASISIHLCAEYLNDETWEEGEWGPNLEEFMERFGEHPERLKNLYFTYLLVLRALAKAAPYLENYDFN 239 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTEEECCTSS-EEEE--HHHHHHHCTCHHHHHHHHHHHHHHHHHHHHCCHHHHHST---
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcCCcccccccCCCCHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999998 44 689999999999999999999999999999999999999999999999
Q ss_pred CCCchhcHHHHHHHHHHhcCccccccCCCCCccccccCCCCcchHHHHHHHHhhhhhhhhcCccCCccccccchhhhHHH
Q 012555 301 TGNHEDDLKTVSLMKQLLYNPKLQAACPLPFDEAKLWQGQSGPELKQQIQEQFRNISALMDCVGCEKCRLWGKLQVLGLG 380 (461)
Q Consensus 301 tG~~~eD~~t~~lv~~Ll~~~~l~~sc~~~FDE~~lF~~~~~~~LK~efr~~FrNISrIMDCVgCeKCRLWGKLQt~GLg 380 (461)
||+..+|.+|+++|.+|++... +||.+|||+.||+++.+.+||+|||+|||||||||||||||||||||||||+|||
T Consensus 240 tg~~~eD~~t~~~l~~ll~~~~---~~~~~FdE~~lf~~~~~~~Lk~efr~~F~NIs~IMDCV~CeKCRLWGKlQt~Glg 316 (357)
T PF04137_consen 240 TGNDEEDAETKKLLRDLLSSAK---SCPSHFDESSLFKGDEAPQLKEEFRQHFRNISRIMDCVGCEKCRLWGKLQTQGLG 316 (357)
T ss_dssp STTSCCCCCHHHHHHHHHHCCH---HS-CCCGTTTTTTTTCHHHHHHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHH
T ss_pred cCChhhhHHHHHHHHHHHHHHH---hccccCCHHHHcCCccHHHHHHHHHHHHhhHHHHHcCcccchheeechhhhhhHH
Confidence 9999999999999999998754 6999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccCCccccccccccchhhHHHHHHHHHHHHHHHHHHH
Q 012555 381 TALKILFSVEGQNHAAQSQLQLQRNEVIALVNLLNRLSESVKIVH 425 (461)
Q Consensus 381 TALKILFs~~~~~~~~~~~~~L~R~EiVALiNtf~RlS~SI~~v~ 425 (461)
|||||||+.++..+ .++|+|+|||||||||+|||+||++|+
T Consensus 317 TALKILf~~~~~~~----~~~L~R~E~VAL~Nt~~rlS~SI~~v~ 357 (357)
T PF04137_consen 317 TALKILFSDDEKQN----PFKLQRNELVALFNTFGRLSESIEAVN 357 (357)
T ss_dssp HHHHHHCHHHCHHC----CCTSBHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCccCcCC----cCcccHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999987332 279999999999999999999999986
No 3
>COG5061 ERO1 Oxidoreductin, endoplasmic reticulum membrane-associated protein involved in disulfide bond formation [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=100.00 E-value=2.5e-90 Score=690.03 Aligned_cols=320 Identities=32% Similarity=0.561 Sum_probs=275.3
Q ss_pred cccccC-cccchhhhhhhhhchhhHHhHHhhcCCCceEEeccCC-CCCCCCCC-CCCCCCCCCccccCCCCC-CCCCCCC
Q 012555 71 TGMVED-CCCDYETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLW-CDCPFWPD-DGMCRLRDCSVCECPENE-FPEPFKK 146 (461)
Q Consensus 71 ~G~vdD-c~c~~etId~~N~~~l~P~L~~L~~t~fFRyfKVnL~-~~CPFW~d-d~~C~~~~C~V~~c~e~e-iP~~wr~ 146 (461)
.-+|.+ |..++. |.++|.+ +.|+|-.|+++|||+||++||+ +.||||+| ++||.+++|+|..-+|.+ ||+.|+.
T Consensus 22 ~~iis~t~nss~~-i~~~ns~-vr~ll~~LteSDym~yyrlnLy~k~c~lw~ddn~mc~s~acnv~v~~e~d~vpkvW~~ 99 (425)
T COG5061 22 EIIISQTDNSSTG-IYQMNSK-VRSLLPVLTESDYMFYYRLNLYAKACTLWPDDNDMCVSKACNVTVRSEEDLVPKVWKD 99 (425)
T ss_pred hheecCcccccch-HHHHhhh-hhhhhHHhhhhhHHHHHHHHHHHhhCCCCCCcchhhhcccccceehhhhhcchhHhHh
Confidence 335555 667788 9999987 6999999999999999999999 79999998 689999999999999988 9999996
Q ss_pred CCCCCCC----CccccccCCCCcccccccchhhhcCccccCCCCCCCCCCCCCCceEeeCCCCCCCCCCCCCCChhhhHH
Q 012555 147 PFHILPS----DDLMCQEGKPEATVDRTLDKRAFRGWIETDNPWTNDDETDNGEMTYVNLLLNPERYTGYTGPSARRIWD 222 (461)
Q Consensus 147 ~~~~~~~----~~~~c~~~~~~~~vd~tl~~~~~~~w~~~d~~~~~dDe~d~~~~~YVDLl~NPERyTGY~G~~A~rIW~ 222 (461)
.-+...+ -++.|+..+ -.|..+|+.|.....+.+||||+.||||||||+|++|++||+
T Consensus 100 kls~f~ph~kkldq~c~~sk------------------~pd~~YCyvdn~~~~n~vyisLlenpErfTGY~g~hSa~IWr 161 (425)
T COG5061 100 KLSLFKPHSKKLDQFCSESK------------------CPDLSYCYVDNKSIFNDVYISLLENPERFTGYKGNHSAEIWR 161 (425)
T ss_pred hhhhhccchhhhhhcccccc------------------CCchhheeecCCCCCCcEEeehhcChHhhcCCCCCchHHHHH
Confidence 3222211 122332211 012236776666667899999999999999999999999999
Q ss_pred HHHhhcCCCCCCC------------CCCCCCCcCCCCCCC----CCCCCCCChHHHHHHHhhhcchhhhHHHHHHHHHHH
Q 012555 223 AVYTENCPKWMAI------------VPANPQTRPNPPAKT----RPLRWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRA 286 (461)
Q Consensus 223 aIY~ENCF~~~~~------------~~CLHaSIsiHl~~~----~~~~wgpNl~~F~~Rv~~~PeRl~NLYF~Yl~vLRA 286 (461)
.||+.|||..... .++|||||+||+|.+ .+|.|+||+++|++||+++||||.|+||+|++|.+|
T Consensus 162 ~Iyeqncfd~~~~p~~Lekr~FyRlvSGfhaSIsTHls~~yln~~~g~w~pNldlfrarvgnfpdRieN~yfnYalv~~a 241 (425)
T COG5061 162 KIYEQNCFDTLLPPTLLEKRMFYRLVSGFHASISTHLSSFYLNVFFGTWLPNLDLFRARVGNFPDRIENFYFNYALVRSA 241 (425)
T ss_pred HHHHhhccccCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcceecCCHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 9999999975432 346999999999998 689999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhccCCCCchhcHHHHHHHHHHhcCccccccCCCCCccccccCCCCcchHHHHHHHHhhhhhhhhcCccCC
Q 012555 287 VTKATDYLEQAEYDTGNHEDDLKTVSLMKQLLYNPKLQAACPLPFDEAKLWQGQSGPELKQQIQEQFRNISALMDCVGCE 366 (461)
Q Consensus 287 l~Ka~p~L~~~~f~tG~~~eD~~t~~lv~~Ll~~~~l~~sc~~~FDE~~lF~~~~~~~LK~efr~~FrNISrIMDCVgCe 366 (461)
|.|+.++|....|+..+. .+++..|.+|++.. ..-|..|||..+|+++.+..||++||+|||+|||||||||||
T Consensus 242 l~kI~~~l~sftFC~~~~---~e~~~k~~~lis~i---~~~~k~fne~q~fa~e~Si~lKd~frehfr~vs~lMdcVgCe 315 (425)
T COG5061 242 LGKIDVDLSSFTFCPTDK---DELSGKLSSLISAI---RAQGKTFNEIQPFALEKSIQLKDRFREHFRDVSRLMDCVGCE 315 (425)
T ss_pred HHhhccCCcccccCCccH---HHHHhHHHHHHHHH---HhccccccceecccCccchhhhHHHHHHHHhHHHHHHhcCch
Confidence 999999999999985432 27888899998743 245779999999999999999999999999999999999999
Q ss_pred ccccccchhhhHHHHHHHHhccccCCccccccccccchhhHHHHHHHHHHHHHHHH
Q 012555 367 KCRLWGKLQVLGLGTALKILFSVEGQNHAAQSQLQLQRNEVIALVNLLNRLSESVK 422 (461)
Q Consensus 367 KCRLWGKLQt~GLgTALKILFs~~~~~~~~~~~~~L~R~EiVALiNtf~RlS~SI~ 422 (461)
||||||||||+|+||||||||+.+-+ .+.|++.|+|||+|||+|||+||+
T Consensus 316 kCrLWGkIQttGygtALKilfe~et~------~fdLr~~E~vaLvntFdRLS~Sv~ 365 (425)
T COG5061 316 KCRLWGKIQTTGYGTALKILFESETQ------LFDLRSLERVALVNTFDRLSVSVR 365 (425)
T ss_pred hhheeeeeeecchHHHHHHHhccccc------cccccHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999988543 378999999999999999999997
No 4
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=39.62 E-value=16 Score=29.51 Aligned_cols=26 Identities=27% Similarity=0.678 Sum_probs=17.7
Q ss_pred HHHHHHHHhhhhhhhhcCccCCcccc
Q 012555 345 LKQQIQEQFRNISALMDCVGCEKCRL 370 (461)
Q Consensus 345 LK~efr~~FrNISrIMDCVgCeKCRL 370 (461)
++..+..+++.-.-..+||||.+|--
T Consensus 35 ~r~r~~~k~~~~~~~~~CVgCgrCv~ 60 (69)
T PF13746_consen 35 MRYRFMHKLRDRYGEGDCVGCGRCVR 60 (69)
T ss_pred cchhhhhhhhhhcCCccCCCcChHhh
Confidence 34444455555557889999999964
No 5
>PF15264 TSSC4: Tumour suppressing sub-chromosomal transferable candidate 4
Probab=37.29 E-value=13 Score=33.38 Aligned_cols=15 Identities=33% Similarity=0.649 Sum_probs=11.7
Q ss_pred eCCCCCCCCCCCCCC
Q 012555 201 NLLLNPERYTGYTGP 215 (461)
Q Consensus 201 DLl~NPERyTGY~G~ 215 (461)
|-++||||||-|+=.
T Consensus 56 DYv~nP~KwTkYSL~ 70 (115)
T PF15264_consen 56 DYVRNPEKWTKYSLD 70 (115)
T ss_pred CCcCCcccceeeecC
Confidence 334999999999753
No 6
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=29.28 E-value=91 Score=22.98 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=22.6
Q ss_pred HHHHH-HhhhcchhhhHHHHHHHHHHHHHH
Q 012555 261 LMYDR-VLRYQDRVRNLYFTFLFVLRAVTK 289 (461)
Q Consensus 261 ~F~~R-v~~~PeRl~NLYF~Yl~vLRAl~K 289 (461)
-|.+| +..-..+|+|+-|.++++.-+|..
T Consensus 7 ~fieryfddiqkwirnit~cfal~vv~lvs 36 (40)
T PF13124_consen 7 AFIERYFDDIQKWIRNITFCFALLVVVLVS 36 (40)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777 456788999999999988776653
No 7
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=28.36 E-value=5.1 Score=34.03 Aligned_cols=16 Identities=25% Similarity=0.463 Sum_probs=4.7
Q ss_pred cCCcchHHHHHHHHHH
Q 012555 19 GLGRGLWSVWAVIVVL 34 (461)
Q Consensus 19 ~~~~~~~~~~~~~~~~ 34 (461)
..++|.|+++.|++|+
T Consensus 63 kKrrwlwLlikl~lV~ 78 (81)
T PF14812_consen 63 KKRRWLWLLIKLFLVF 78 (81)
T ss_dssp --------TTTTHCCH
T ss_pred ccchhHHHHHHHHHHh
Confidence 3556888777665553
No 8
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=21.67 E-value=41 Score=31.61 Aligned_cols=34 Identities=26% Similarity=0.216 Sum_probs=15.8
Q ss_pred Cccccchhhhhh-HHHH-hccCCcchHHHHHHHHHH
Q 012555 1 MAKDKKRNDQIS-KEKK-KKGLGRGLWSVWAVIVVL 34 (461)
Q Consensus 1 ~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~ 34 (461)
||++++.|..-. ++.. +++.++..++++++++++
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~kkk~liii~~~~lll 36 (166)
T PRK12785 1 MAKKPKKAPAAEGGEGAAPPKKKKKLIIIAAAAVLL 36 (166)
T ss_pred CCCCcccccccccccccCCCCCcceEeeHHHHHHHH
Confidence 787766665333 2222 233445544444333333
No 9
>PHA02450 hypothetical protein
Probab=19.71 E-value=28 Score=26.88 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=18.4
Q ss_pred CCCCCCCCCCCCCChhhhHHHHHhhcC
Q 012555 203 LLNPERYTGYTGPSARRIWDAVYTENC 229 (461)
Q Consensus 203 l~NPERyTGY~G~~A~rIW~aIY~ENC 229 (461)
..|||.||-|.|. -+--.||.=+-
T Consensus 4 ~in~egf~ryggd---c~cg~iyty~g 27 (53)
T PHA02450 4 EINPEGFTRYGGD---CTCGPIYTYGG 27 (53)
T ss_pred ccCcccceeeCCc---ccccceeeeCC
Confidence 3699999999998 46677776544
No 10
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=18.43 E-value=86 Score=24.61 Aligned_cols=11 Identities=27% Similarity=0.093 Sum_probs=5.9
Q ss_pred ccCCcchHHHH
Q 012555 18 KGLGRGLWSVW 28 (461)
Q Consensus 18 ~~~~~~~~~~~ 28 (461)
.+.++|.-+.+
T Consensus 12 ~~~~~Wlvtya 22 (58)
T PF13677_consen 12 EGSPRWLVTYA 22 (58)
T ss_pred CCCccHHHHHH
Confidence 44667854433
Done!