BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012559
(461 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T34|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a)
In Prefission State
pdb|3T34|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a)
In Prefission State
pdb|3T35|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|C Chain C, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|D Chain D, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
Length = 360
Score = 491 bits (1265), Expect = e-139, Method: Compositional matrix adjust.
Identities = 236/330 (71%), Positives = 281/330 (85%), Gaps = 5/330 (1%)
Query: 4 MTSLIGLINKIQRACTVLGDHGGEGM--SLWEALPXXXXXXXXXXXXXXXLESVVGRDFL 61
M +LI L+NKIQRACT LGDHG +LW++LP LES+VG+DFL
Sbjct: 1 MENLISLVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFL 60
Query: 62 PRGSGIVTRRPLVLQLHQTEGGT-DYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQ 120
PRGSGIVTRRPLVLQL + + GT +YAEFLH PRKKFTDFAAVRKEI DETDR TG+SK
Sbjct: 61 PRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKA 120
Query: 121 ISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAI 180
IS++PI LSIYSPNVVNLTLIDLPGLTKVAV+GQ +SIV+DIENMVRSY+EKP+CIILAI
Sbjct: 121 ISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAI 180
Query: 181 SPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGI 240
SPANQD+ATSDAIK++REVDP+G+RTFGVLTK+DLMDKGT+A+E+LEGRS++L++PWVG+
Sbjct: 181 SPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGV 240
Query: 241 VNRSQADINKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERVIRQRIP 300
VNRSQADINKNVDMIAAR++EREYF + EY HLA+KMGSE+LAK+LS+HLERVI+ RIP
Sbjct: 241 VNRSQADINKNVDMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIP 300
Query: 301 SIIALINKNIDEINAELDRIGRPI--GVDS 328
I +LINK + E+ EL R+G+PI G DS
Sbjct: 301 GIQSLINKTVLELETELSRLGKPIAHGTDS 330
>pdb|3ZVR|A Chain A, Crystal Structure Of Dynamin
Length = 772
Score = 332 bits (852), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 185/451 (41%), Positives = 258/451 (57%), Gaps = 16/451 (3%)
Query: 4 MTSLIGLINKIQRACTVLGDHGGEGMSLWEALPXXXXXXXXXXXXXXXLESVVGRDFLPR 63
M LI L+N++Q A + +G + LP LE+ VGRDFLPR
Sbjct: 26 MEDLIPLVNRLQDAFSAIGQNADLD------LPQIAVVGGQSAGKSSVLENFVGRDFLPR 79
Query: 64 GSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISN 123
GSGIVTRRPLVLQL T+YAEFLH KKFTDF VR EI ETDR+TG +K IS
Sbjct: 80 GSGIVTRRPLVLQL--VNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISP 137
Query: 124 IPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPA 183
+PI L +YSP+V+NLTL+DLPG+TKV V QP I I +M+ +V K +C+ILA+SPA
Sbjct: 138 VPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPA 197
Query: 184 NQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNR 243
N D+A SDA+K+A+EVDP G+RT GV+TKLDLMD+GT+A +VLE + L+ ++G+VNR
Sbjct: 198 NSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNR 257
Query: 244 SQADINKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERVIRQRIPSII 303
SQ DI+ D+ AA ER++F + P Y HLA +MG+ YL K+L+Q L IR +P +
Sbjct: 258 SQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLR 317
Query: 304 ALINKNIDEINAELDRIGRPIGVDSGAQLYTILEMCRAFERVFKEHLDGG--------RA 355
+ + I E+D D + +L+M + F F++ ++G +
Sbjct: 318 NKLQSQLLSIEKEVDEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELS 377
Query: 356 GGDRIYGVFDHQLPAALKKLPFDRHLSTRNVQKVVSEADGYQPHLIAPEQGYRRLIDGSI 415
GG RI +F + P L K+ FD R + + + L P+ + + +
Sbjct: 378 GGARINRIFHERFPFELVKMEFDEKELRREISYAIKNIHDIRTGLFTPDLAFEATVKKQV 437
Query: 416 SYFKGPAEASVDAVHFVLKELVRKSIAETEQ 446
K P+ VD V L +RK + +Q
Sbjct: 438 QKLKEPSIKCVDMVVSELTSTIRKCSEKLQQ 468
>pdb|3SNH|A Chain A, Crystal Structure Of Nucleotide-Free Human Dynamin1
Length = 743
Score = 329 bits (844), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 184/451 (40%), Positives = 258/451 (57%), Gaps = 16/451 (3%)
Query: 4 MTSLIGLINKIQRACTVLGDHGGEGMSLWEALPXXXXXXXXXXXXXXXLESVVGRDFLPR 63
M LI L+N++Q A + +G + LP LE+ VGRDFLPR
Sbjct: 3 MEDLIPLVNRLQDAFSAIGQNADLD------LPQIAVVGGQSAGKSSVLENFVGRDFLPR 56
Query: 64 GSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISN 123
GSGIVTRRPLVLQL T+YAEFLH KKFTDF VR EI ETDR+TG +K IS
Sbjct: 57 GSGIVTRRPLVLQL--VNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISP 114
Query: 124 IPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPA 183
+PI L +YSP+V+NLTL+DLPG+TKV V QP I I +M+ +V K +C+ILA+SPA
Sbjct: 115 VPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPA 174
Query: 184 NQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNR 243
N D+A SDA+K+A+EVDP G+RT GV+TKLDLMD+GT+A +VLE + L+ ++G+VNR
Sbjct: 175 NSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNR 234
Query: 244 SQADINKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERVIRQRIPSII 303
SQ DI+ D+ AA ER++F + P Y HLA +MG+ YL K+L+Q L IR +P +
Sbjct: 235 SQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLR 294
Query: 304 ALINKNIDEINAELDRIGRPIGVDSGAQLYTILEMCRAFERVFKEHLDGG--------RA 355
+ + I E++ D + +L+M + F F++ ++G +
Sbjct: 295 NKLQSQLLSIEKEVEEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELS 354
Query: 356 GGDRIYGVFDHQLPAALKKLPFDRHLSTRNVQKVVSEADGYQPHLIAPEQGYRRLIDGSI 415
GG RI +F + P L K+ FD R + + A L P+ + ++ +
Sbjct: 355 GGARINRIFHERFPFELVKMEFDEKELRREISYAIKNAAAAATGLFTPDMAFETIVKKQV 414
Query: 416 SYFKGPAEASVDAVHFVLKELVRKSIAETEQ 446
+ P VD V L VR+ + +Q
Sbjct: 415 KKIREPCLKCVDMVISELISTVRQCTKKLQQ 445
>pdb|3ZYC|A Chain A, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYC|D Chain D, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYS|A Chain A, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|D Chain D, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 353
Score = 300 bits (769), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 164/343 (47%), Positives = 219/343 (63%), Gaps = 16/343 (4%)
Query: 3 TMTSLIGLINKIQRACTVLGDHGGEGMSLWEALPXXXXXXXXXXXXXXXLESVVGRDFLP 62
+M LI L+N++Q A + +G + LP LE+ VGRDFLP
Sbjct: 5 SMEDLIPLVNRLQDAFSAIGQNADLD------LPQIAVVGGQSAGKSSVLENFVGRDFLP 58
Query: 63 RGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQIS 122
RGSGIVTRRPLVLQL T+YAEFLH KKFTDF VR EI ETDR+TG +K IS
Sbjct: 59 RGSGIVTRRPLVLQL--VNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGIS 116
Query: 123 NIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISP 182
+PI L +YSP+V+NLTL+DLPG+TKV V QP I I +M+ +V K +C+ILA+SP
Sbjct: 117 PVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSP 176
Query: 183 ANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVN 242
AN D+A SDA+K+A+EVDP G+RT GV+TKLDLMD+GT+A +VLE + L+ ++G+VN
Sbjct: 177 ANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVN 236
Query: 243 RSQADINKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERVIRQRIPSI 302
RSQ DI+ D+ AA ER++F + P Y HLA +MG+ YL K+L+Q L IR +P +
Sbjct: 237 RSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGL 296
Query: 303 -------IALINKNIDEI-NAELDRIGRPIGVDSGAQLYTILE 337
+ I K ++E N D+ G VD ++Y L+
Sbjct: 297 RNKLQSQLLSIEKEVEEYKNFRPDKHGTDSRVDEMLRMYHALK 339
>pdb|2AKA|B Chain B, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 299
Score = 299 bits (765), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 154/299 (51%), Positives = 201/299 (67%), Gaps = 8/299 (2%)
Query: 4 MTSLIGLINKIQRACTVLGDHGGEGMSLWEALPXXXXXXXXXXXXXXXLESVVGRDFLPR 63
M LI L+N++Q A + +G + LP LE+ VGRDFLPR
Sbjct: 1 MEDLIPLVNRLQDAFSAIGQNADLD------LPQIAVVGGQSAGKSSVLENFVGRDFLPR 54
Query: 64 GSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISN 123
GSGIVTRRPLVLQL T+YAEFLH KKFTDF VR EI ETDR+TG +K IS
Sbjct: 55 GSGIVTRRPLVLQL--VNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISP 112
Query: 124 IPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPA 183
+PI L +YSP+V+NLTL+DLPG+TKV V QP I I +M+ +V K +C+ILA+SPA
Sbjct: 113 VPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPA 172
Query: 184 NQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNR 243
N D+A SDA+K+A+EVDP G+RT GV+TKLDLMD+GT+A +VLE + L+ ++G+VNR
Sbjct: 173 NSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNR 232
Query: 244 SQADINKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERVIRQRIPSI 302
SQ DI+ D+ AA ER++F + P Y HLA +MG+ YL K+L+Q L IR +P +
Sbjct: 233 SQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGL 291
>pdb|3L43|A Chain A, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|B Chain B, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|C Chain C, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|D Chain D, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
Length = 319
Score = 294 bits (752), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 154/299 (51%), Positives = 201/299 (67%), Gaps = 8/299 (2%)
Query: 4 MTSLIGLINKIQRACTVLGDHGGEGMSLWEALPXXXXXXXXXXXXXXXLESVVGRDFLPR 63
M LI L+N++Q A + LG S LP LE+ VGRDFLPR
Sbjct: 19 MEELIPLVNRLQDAFSALGQ------SCLLELPQIAVVGGQSAGKSSVLENFVGRDFLPR 72
Query: 64 GSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISN 123
GSGIVTRRPLVLQL ++ +YAEFLH KKFTDF VR EI ETDR+TG +K IS+
Sbjct: 73 GSGIVTRRPLVLQLITSKA--EYAEFLHCKGKKFTDFDEVRLEIEAETDRVTGMNKGISS 130
Query: 124 IPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPA 183
IPI L +YSP+V+NLTLIDLPG+TKV V QP I I M+ ++ + +C+ILA++PA
Sbjct: 131 IPINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIREMIMQFITRENCLILAVTPA 190
Query: 184 NQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNR 243
N D+A SDA+KLA+EVDP G RT GV+TKLDLMD+GT+A +VLE + L+ +VG+VNR
Sbjct: 191 NTDLANSDALKLAKEVDPQGLRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYVGVVNR 250
Query: 244 SQADINKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERVIRQRIPSI 302
SQ DI+ D+ AA ER++F + P Y H+A +MG+ +L K+L+Q L IR +P+
Sbjct: 251 SQKDIDGKKDIKAAMLAERKFFLSHPAYRHIADRMGTPHLQKVLNQQLTNHIRDTLPNF 309
>pdb|2X2E|A Chain A, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2E|D Chain D, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2F|A Chain A, Dynamin 1 Gtpase Dimer, Short Axis Form
pdb|2X2F|D Chain D, Dynamin 1 Gtpase Dimer, Short Axis Form
Length = 353
Score = 287 bits (735), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 160/339 (47%), Positives = 212/339 (62%), Gaps = 16/339 (4%)
Query: 7 LIGLINKIQRACTVLGDHGGEGMSLWEALPXXXXXXXXXXXXXXXLESVVGRDFLPRGSG 66
LI L+N++Q A + +G + LP LE+ VGRDFLPRGSG
Sbjct: 9 LIPLVNRLQDAFSAIGQNADLD------LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG 62
Query: 67 IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPI 126
IVTRRPLVLQL T+YAEFLH KKFTDF VR EI ETDR+TG +K IS +PI
Sbjct: 63 IVTRRPLVLQL--VNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPI 120
Query: 127 QLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD 186
L +YSP+V+NLTL+DLPG TKV V QP I I + + +V K +C+ILA+SPAN D
Sbjct: 121 NLRVYSPHVLNLTLVDLPGXTKVPVGDQPPDIEFQIRDXLXQFVTKENCLILAVSPANSD 180
Query: 187 IATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQA 246
+A SDA+K+A+EVDP G+RT GV+TKLDL D+GT+A +VLE + L+ ++G+VNRSQ
Sbjct: 181 LANSDALKVAKEVDPQGQRTIGVITKLDLXDEGTDARDVLENKLLPLRRGYIGVVNRSQK 240
Query: 247 DINKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERVIRQRIPSI---- 302
DI+ D+ AA ER++F + P Y HLA + G+ YL K+L+Q L IR +P +
Sbjct: 241 DIDGKKDITAALAAERKFFLSHPSYRHLADRXGTPYLQKVLNQQLTNHIRDTLPGLRNKL 300
Query: 303 ---IALINKNIDEI-NAELDRIGRPIGVDSGAQLYTILE 337
+ I K ++E N D+ G VD + Y L+
Sbjct: 301 QSQLLSIEKEVEEYKNFRPDKHGTDSRVDEXLRXYHALK 339
>pdb|1JWY|B Chain B, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|B Chain B, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 315
Score = 273 bits (699), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 147/317 (46%), Positives = 201/317 (63%), Gaps = 13/317 (4%)
Query: 7 LIGLINKIQRACTVLGDHGGEGMSLWEALPXXXXXXXXXXXXXXXLESVVGRDFLPRGSG 66
LI +INK+Q LG + LP LE++VGRDFLPRGSG
Sbjct: 3 LIPVINKLQDVFNTLGSDPLD-------LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSG 55
Query: 67 IVTRRPLVLQLHQTEGGTD------YAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQ 120
IVTRRPL+LQL D + EFLH P F DF+ +R+EI +TDR+TGK+K
Sbjct: 56 IVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKG 115
Query: 121 ISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAI 180
IS PI L IYSP+VVNLTL+DLPG+TKV V QP I + I MV +Y++K + II+A+
Sbjct: 116 ISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAV 175
Query: 181 SPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGI 240
+PAN D+A SDA++LA+EVDP G+RT GV+TKLDLMDKGT+A+EVL GR L ++G+
Sbjct: 176 TPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGV 235
Query: 241 VNRSQADINKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERVIRQRIP 300
+NRSQ DI + + + E YF+ P Y +A++ G+ YL+K L++ L IR +P
Sbjct: 236 INRSQEDIIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLP 295
Query: 301 SIIALINKNIDEINAEL 317
+ ++K + ++ EL
Sbjct: 296 DLKVKVSKMLSDVQGEL 312
>pdb|3SZR|A Chain A, Crystal Structure Of Modified Nucleotide-Free Human Mxa
Length = 608
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 126/422 (29%), Positives = 211/422 (50%), Gaps = 26/422 (6%)
Query: 34 ALPXXXXXXXXXXXXXXXLESVVGRDFLPRGSGIVTRRPLVLQLHQT------EGGTDYA 87
ALP LE++ G LPRGSGIVTR PLVL+L + G Y
Sbjct: 44 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQ 102
Query: 88 EFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLT 147
++ + +D + V KEI+ + I G+ IS+ I L I S +V +LTLIDLPG+T
Sbjct: 103 DY----EIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGIT 158
Query: 148 KVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTF 207
+VAV QP I I+ +++ Y+++ I L + P+N DIAT++A+ +A+EVDP G+RT
Sbjct: 159 RVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTI 218
Query: 208 GVLTKLDLMDKGT--NALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARRKEREYF 265
G+LTK DL+DKGT ++V+ + L+ ++ + R Q +I + + A ++E+ +F
Sbjct: 219 GILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIVKCRGQQEIQDQLSLSEALQREKIFF 278
Query: 266 ETSPEYGHL--ASKMGSEYLAKLLSQHLERVIRQRIPSIIALINKNIDEINAELDRIGRP 323
E P + L K LA+ L+ L I + +P + I + I EL + G
Sbjct: 279 ENHPYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQKYGVD 338
Query: 324 IGVDSGAQLYTILEMCRAFERVFKEHLDGGRAGGDRIYGVFD------HQLPAALKKLPF 377
I D +++ +++ AF + + G G+ +F H+ ++
Sbjct: 339 IPEDENEKMFFLIDKVNAFNQDITALMQGEETVGEEDIRLFTRLRHEFHKWSTIIENNFQ 398
Query: 378 DRH-LSTRNVQKVVSEADGYQPHLIAPEQGYRRLIDGSISYFKGPAEASVDAVHFVLKEL 436
+ H + +R +QK ++A + + + ++ I + PA VD +H V ++
Sbjct: 399 EGHKILSRKIQKFENQAAAAELPGFVNYRTFETIVKQQIKALEEPA---VDMLHTV-TDM 454
Query: 437 VR 438
VR
Sbjct: 455 VR 456
>pdb|3ZYS|B Chain B, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|E Chain E, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 662
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 120/395 (30%), Positives = 203/395 (51%), Gaps = 25/395 (6%)
Query: 61 LPRGSGIVTRRPLVLQLHQT------EGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114
LPRGSGIVTR PLVL+L + G Y ++ + +D + V KEI+ + I
Sbjct: 95 LPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDY----EIEISDASEVEKEINKAQNAI 150
Query: 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPS 174
G+ IS+ I L I S +V +LTLIDLPG+T+VAV QP I I+ +++ Y+++
Sbjct: 151 AGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQE 210
Query: 175 CIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGT--NALEVLEGRSYR 232
I L + P+N DIAT++A+ +A+EVDP G+RT G+LTK DL+DKGT ++V+ +
Sbjct: 211 TISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVVRNLVFH 270
Query: 233 LQHPWVGIVNRSQADINKNVDMIAARRKEREYFETSPEYGHL--ASKMGSEYLAKLLSQH 290
L+ ++ + R Q +I + + A ++E+ +FE P + L K LA+ L+
Sbjct: 271 LKKGYMIVKCRGQQEIQDQLSLSEALQREKIFFENHPYFRDLLEEGKATVPCLAEKLTSE 330
Query: 291 LERVIRQRIPSIIALINKNIDEINAELDRIGRPIGVDSGAQLYTILEMCRAFERVFKEHL 350
L I + +P + I + I EL + G I D +++ +++ AF + +
Sbjct: 331 LITHICKSLPLLENQIKETHQRITEELQKYGVDIPEDENEKMFFLIDKVNAFNQDITALM 390
Query: 351 DGGRAGGDRIYGVFD------HQLPAALKKLPFDRH-LSTRNVQKVVSEADGYQPHLIAP 403
G G+ +F H+ ++ + H + +R +QK ++ G +
Sbjct: 391 QGEETVGEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQYRGRELPGFVN 450
Query: 404 EQGYRRLIDGSISYFKGPAEASVDAVHFVLKELVR 438
+ + ++ I + PA VD +H V ++VR
Sbjct: 451 YRTFETIVKQQIKALEEPA---VDMLHTV-TDMVR 481
>pdb|1J3U|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
pdb|1J3U|B Chain B, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
pdb|3R6Q|A Chain A, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|B Chain B, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|C Chain C, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|D Chain D, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|E Chain E, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|F Chain F, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|G Chain G, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|H Chain H, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6V|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|B Chain B, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|C Chain C, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|D Chain D, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|E Chain E, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|F Chain F, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|G Chain G, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|H Chain H, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
Length = 468
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 40/87 (45%), Gaps = 20/87 (22%)
Query: 163 ENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERT------FGVLTKLDLM 216
E ++ YVEK II AI+P + A KLARE TGE +GVLT+ L
Sbjct: 395 EERMKEYVEKSIGIITAINP---HVGYETAAKLAREAYLTGESIRELCIKYGVLTEEQLN 451
Query: 217 DKGTNALEVLEGRSYRLQHPWVGIVNR 243
E+L Y + HP GI R
Sbjct: 452 -------EIL--NPYEMIHP--GIAGR 467
>pdb|2VJY|A Chain A, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|B Chain B, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|C Chain C, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|D Chain D, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VK4|A Chain A, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|B Chain B, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|C Chain C, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|D Chain D, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
Length = 563
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 11/128 (8%)
Query: 75 LQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISD---ETDRITGKSKQISNIPIQLSIY 131
L LH T G D+ F H ++ A+ +I+ E DR ++ +S P+ L +
Sbjct: 111 LLLHHTLGNGDFTVF-HRMSSNISETTAMITDINTAPAEIDRCI-RTTYVSQRPVYLGLP 168
Query: 132 SPNVVNLT----LIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI 187
+ N+V+LT L+D P + PE+ E IEN+++ E + +ILA + ++
Sbjct: 169 A-NLVDLTVPASLLDTP-IDLSLKPNDPEAEEEVIENVLQLIKEAKNPVILADACCSRHD 226
Query: 188 ATSDAIKL 195
A ++ KL
Sbjct: 227 AKAETKKL 234
>pdb|2H85|A Chain A, Crystal Structure Of Nsp 15 From Sars
Length = 347
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 235 HPWVGIVNRSQADINKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERV 294
H +G+ RSQ K D I + YF T + G +SK G + LL +E +
Sbjct: 251 HLMIGLAKRSQDSPLKLEDFIPMDSTVKNYFITDAQTG--SSKCGCSVIDLLLGDFVEII 308
Query: 295 IRQRIPSIIALINKNID 311
Q + I ++ ID
Sbjct: 309 KSQDLSVISKVVKVTID 325
>pdb|1YUB|A Chain A, Solution Structure Of An Rrna Methyltransferase (Ermam)
That Confers Macrolide-Lincosamide-Streptogramin
Antibiotic Resistance, Nmr, Minimized Average Structure
Length = 245
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 380 HLSTRNVQKVVSEADGYQPHLIAPEQGYRRLID 412
HLST+ ++KVV E+ +LI E Y+R +D
Sbjct: 104 HLSTQIIKKVVFESRASDIYLIVEEGFYKRTLD 136
>pdb|2APL|A Chain A, Crystal Structure Of Protein Pg0816 From Porphyromonas
Gingivalis
Length = 157
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 249 NKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERV 294
NK + + A+ + FE SPEY HL +++ + + S HL +
Sbjct: 105 NKAIQSVFAKYDLTDDFEASPEYEHLYTELTGTIVLLIESNHLPTI 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,125,131
Number of Sequences: 62578
Number of extensions: 538752
Number of successful extensions: 1387
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1358
Number of HSP's gapped (non-prelim): 20
length of query: 461
length of database: 14,973,337
effective HSP length: 102
effective length of query: 359
effective length of database: 8,590,381
effective search space: 3083946779
effective search space used: 3083946779
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)