Query 012559
Match_columns 461
No_of_seqs 331 out of 2952
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 03:54:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012559.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012559hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0446 Vacuolar sorting prote 100.0 5.9E-79 1.3E-83 645.0 31.1 450 1-459 1-460 (657)
2 smart00053 DYNc Dynamin, GTPas 100.0 1E-48 2.3E-53 369.1 25.0 239 4-250 1-239 (240)
3 PF01031 Dynamin_M: Dynamin ce 100.0 2.5E-41 5.5E-46 332.6 20.4 235 223-459 2-245 (295)
4 KOG0447 Dynamin-like GTP bindi 100.0 4.6E-32 9.9E-37 269.3 25.9 291 6-305 283-586 (980)
5 COG1159 Era GTPase [General fu 99.9 3.5E-25 7.6E-30 209.6 12.3 236 34-334 5-243 (298)
6 PF00350 Dynamin_N: Dynamin fa 99.9 7.1E-23 1.5E-27 184.6 15.7 166 38-213 1-168 (168)
7 TIGR00436 era GTP-binding prot 99.8 3.3E-20 7.2E-25 180.4 12.8 233 36-333 1-234 (270)
8 PRK00089 era GTPase Era; Revie 99.8 5.9E-19 1.3E-23 173.7 12.7 233 34-333 4-239 (292)
9 PRK15494 era GTPase Era; Provi 99.8 1.6E-18 3.4E-23 173.6 13.0 234 35-333 52-286 (339)
10 KOG1423 Ras-like GTPase ERA [C 99.7 1.7E-17 3.6E-22 156.5 10.0 220 34-313 71-321 (379)
11 PF02421 FeoB_N: Ferrous iron 99.7 6E-18 1.3E-22 149.3 6.0 119 37-220 2-122 (156)
12 COG1160 Predicted GTPases [Gen 99.7 2.7E-16 5.8E-21 157.3 13.2 155 36-256 4-161 (444)
13 PRK09866 hypothetical protein; 99.7 1.4E-14 3.1E-19 150.5 24.8 201 36-246 70-336 (741)
14 COG1084 Predicted GTPase [Gene 99.7 1.3E-15 2.8E-20 146.0 15.1 157 4-219 134-296 (346)
15 PRK12298 obgE GTPase CgtA; Rev 99.7 2.3E-15 5E-20 152.9 16.4 181 35-277 159-350 (390)
16 COG0486 ThdF Predicted GTPase 99.6 2.1E-14 4.5E-19 144.2 21.9 154 34-253 216-369 (454)
17 TIGR03156 GTP_HflX GTP-binding 99.6 2.9E-14 6.2E-19 143.2 16.8 126 34-218 188-316 (351)
18 COG0218 Predicted GTPase [Gene 99.6 2.3E-14 5.1E-19 129.3 13.7 126 34-220 23-152 (200)
19 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 4.8E-14 1E-18 130.6 13.0 125 37-219 2-132 (196)
20 PRK12299 obgE GTPase CgtA; Rev 99.5 9.3E-14 2E-18 138.5 14.6 126 34-219 157-287 (335)
21 TIGR00450 mnmE_trmE_thdF tRNA 99.5 1.1E-12 2.4E-17 135.5 22.8 158 34-259 202-359 (442)
22 PRK11058 GTPase HflX; Provisio 99.5 2.9E-13 6.3E-18 139.1 18.2 126 34-218 196-324 (426)
23 PRK05291 trmE tRNA modificatio 99.5 1.7E-12 3.6E-17 134.9 23.6 155 34-259 214-369 (449)
24 COG0370 FeoB Fe2+ transport sy 99.5 3.7E-14 8.1E-19 148.1 10.9 154 36-255 4-159 (653)
25 cd04163 Era Era subfamily. Er 99.5 2E-13 4.3E-18 121.3 13.8 124 35-219 3-127 (168)
26 COG1160 Predicted GTPases [Gen 99.5 6.2E-14 1.4E-18 140.4 11.5 157 34-247 177-335 (444)
27 cd01878 HflX HflX subfamily. 99.5 5E-13 1.1E-17 124.4 16.3 127 34-219 40-169 (204)
28 cd01897 NOG NOG1 is a nucleola 99.5 4.5E-13 9.7E-18 120.3 13.8 25 36-60 1-25 (168)
29 PF01926 MMR_HSR1: 50S ribosom 99.5 1.7E-13 3.8E-18 115.7 10.4 115 37-212 1-116 (116)
30 TIGR03598 GTPase_YsxC ribosome 99.5 5.9E-13 1.3E-17 121.4 13.8 124 34-218 17-144 (179)
31 cd01887 IF2_eIF5B IF2/eIF5B (i 99.5 3.2E-13 6.9E-18 121.0 11.9 117 36-218 1-117 (168)
32 PRK12296 obgE GTPase CgtA; Rev 99.5 3.8E-13 8.2E-18 139.3 13.5 162 34-257 158-337 (500)
33 PRK00454 engB GTP-binding prot 99.5 5.2E-13 1.1E-17 123.1 13.2 125 34-219 23-151 (196)
34 cd01898 Obg Obg subfamily. Th 99.5 3.6E-13 7.9E-18 121.0 11.2 123 37-219 2-130 (170)
35 TIGR03594 GTPase_EngA ribosome 99.5 8.4E-13 1.8E-17 137.0 14.3 126 34-217 171-297 (429)
36 TIGR02729 Obg_CgtA Obg family 99.4 8.5E-13 1.8E-17 131.5 13.3 125 34-218 156-288 (329)
37 PRK03003 GTP-binding protein D 99.4 1.3E-12 2.9E-17 136.9 15.0 160 34-258 37-197 (472)
38 cd01895 EngA2 EngA2 subfamily. 99.4 2.4E-12 5.3E-17 115.3 14.3 126 35-218 2-128 (174)
39 PRK12297 obgE GTPase CgtA; Rev 99.4 2.1E-12 4.6E-17 132.1 14.7 120 35-216 158-287 (424)
40 TIGR03594 GTPase_EngA ribosome 99.4 1.4E-12 3.1E-17 135.3 13.6 153 37-255 1-155 (429)
41 PRK03003 GTP-binding protein D 99.4 9.7E-13 2.1E-17 137.9 12.4 126 34-218 210-337 (472)
42 cd01868 Rab11_like Rab11-like. 99.4 1.8E-12 3.9E-17 116.1 12.2 153 35-253 3-158 (165)
43 KOG1191 Mitochondrial GTPase [ 99.4 6.6E-12 1.4E-16 126.0 17.1 128 34-220 267-406 (531)
44 PRK00093 GTP-binding protein D 99.4 1.5E-12 3.4E-17 135.3 13.1 127 34-218 172-299 (435)
45 cd01867 Rab8_Rab10_Rab13_like 99.4 1.7E-12 3.7E-17 116.7 11.4 153 35-253 3-158 (167)
46 PRK00093 GTP-binding protein D 99.4 4E-12 8.7E-17 132.2 15.5 152 36-253 2-155 (435)
47 cd01866 Rab2 Rab2 subfamily. 99.4 2.5E-12 5.5E-17 115.8 12.0 152 35-253 4-159 (168)
48 PRK09518 bifunctional cytidyla 99.4 2.1E-12 4.5E-17 141.7 13.4 125 34-218 274-398 (712)
49 PRK04213 GTP-binding protein; 99.4 4.5E-12 9.8E-17 117.6 13.7 124 34-218 8-145 (201)
50 PRK09554 feoB ferrous iron tra 99.4 2.7E-12 6E-17 140.5 13.8 159 35-255 3-163 (772)
51 cd04171 SelB SelB subfamily. 99.4 2.6E-12 5.7E-17 114.4 11.3 68 135-218 50-119 (164)
52 cd04164 trmE TrmE (MnmE, ThdF, 99.4 9.6E-12 2.1E-16 109.7 14.8 121 36-219 2-123 (157)
53 cd04112 Rab26 Rab26 subfamily. 99.4 4.6E-12 1E-16 116.7 13.2 112 136-265 50-168 (191)
54 PRK09518 bifunctional cytidyla 99.4 5.4E-12 1.2E-16 138.4 15.8 126 34-218 449-576 (712)
55 cd01861 Rab6 Rab6 subfamily. 99.4 2.9E-12 6.4E-17 114.0 11.2 116 37-218 2-120 (161)
56 cd01894 EngA1 EngA1 subfamily. 99.4 2.8E-12 6.2E-17 113.2 10.6 77 136-219 45-121 (157)
57 cd00880 Era_like Era (E. coli 99.4 1E-11 2.2E-16 108.9 13.8 77 135-219 44-120 (163)
58 cd01865 Rab3 Rab3 subfamily. 99.4 5.5E-12 1.2E-16 113.2 12.3 105 136-255 50-158 (165)
59 cd04142 RRP22 RRP22 subfamily. 99.4 8.2E-12 1.8E-16 115.8 13.8 158 37-252 2-166 (198)
60 smart00173 RAS Ras subfamily o 99.4 4.9E-12 1.1E-16 113.0 11.8 149 37-252 2-154 (164)
61 smart00175 RAB Rab subfamily o 99.4 4.2E-12 9.1E-17 113.2 11.3 115 37-217 2-119 (164)
62 cd04136 Rap_like Rap-like subf 99.4 5.6E-12 1.2E-16 112.4 12.1 116 36-218 2-121 (163)
63 cd04145 M_R_Ras_like M-Ras/R-R 99.4 6.6E-12 1.4E-16 112.0 12.5 69 136-218 50-122 (164)
64 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.4 5E-12 1.1E-16 113.3 11.7 151 36-252 3-156 (166)
65 cd00154 Rab Rab family. Rab G 99.4 4E-12 8.6E-17 111.9 10.7 115 36-216 1-118 (159)
66 cd01853 Toc34_like Toc34-like 99.4 1.1E-11 2.3E-16 118.7 14.3 128 34-219 30-165 (249)
67 cd04122 Rab14 Rab14 subfamily. 99.4 1E-11 2.2E-16 111.5 12.7 151 36-252 3-156 (166)
68 cd04113 Rab4 Rab4 subfamily. 99.3 7.7E-12 1.7E-16 111.5 11.8 150 37-252 2-154 (161)
69 cd01879 FeoB Ferrous iron tran 99.3 5.8E-12 1.2E-16 111.6 10.9 73 136-219 43-117 (158)
70 cd01862 Rab7 Rab7 subfamily. 99.3 7.9E-12 1.7E-16 112.4 11.7 115 37-217 2-123 (172)
71 cd04157 Arl6 Arl6 subfamily. 99.3 1.1E-11 2.4E-16 110.4 12.5 70 135-218 44-119 (162)
72 cd04119 RJL RJL (RabJ-Like) su 99.3 8.4E-12 1.8E-16 111.5 11.6 150 37-253 2-160 (168)
73 cd04175 Rap1 Rap1 subgroup. T 99.3 1.2E-11 2.6E-16 110.6 12.6 69 136-218 49-121 (164)
74 TIGR00991 3a0901s02IAP34 GTP-b 99.3 2.5E-11 5.4E-16 118.1 15.5 140 11-218 21-168 (313)
75 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.3 1.9E-11 4E-16 111.9 13.8 116 36-217 4-123 (183)
76 cd01890 LepA LepA subfamily. 99.3 9.3E-12 2E-16 113.0 11.6 69 134-217 65-133 (179)
77 cd04138 H_N_K_Ras_like H-Ras/N 99.3 1.8E-11 3.9E-16 108.6 13.2 148 36-251 2-153 (162)
78 cd04127 Rab27A Rab27a subfamil 99.3 8.5E-12 1.8E-16 113.4 11.1 104 136-253 63-170 (180)
79 cd04106 Rab23_lke Rab23-like s 99.3 1E-11 2.3E-16 110.6 11.2 70 136-219 51-122 (162)
80 cd00881 GTP_translation_factor 99.3 1E-11 2.3E-16 113.2 11.4 69 135-218 61-129 (189)
81 cd04139 RalA_RalB RalA/RalB su 99.3 1.5E-11 3.3E-16 109.5 12.1 150 37-252 2-154 (164)
82 cd01881 Obg_like The Obg-like 99.3 4.8E-12 1E-16 114.2 9.0 21 40-60 1-21 (176)
83 cd04109 Rab28 Rab28 subfamily. 99.3 1E-11 2.2E-16 116.7 11.2 154 37-255 2-161 (215)
84 cd04156 ARLTS1 ARLTS1 subfamil 99.3 1.5E-11 3.3E-16 109.3 11.8 111 37-217 1-115 (160)
85 cd04104 p47_IIGP_like p47 (47- 99.3 1.3E-11 2.9E-16 114.3 11.7 121 36-218 2-122 (197)
86 COG3596 Predicted GTPase [Gene 99.3 6.5E-12 1.4E-16 118.1 9.5 123 34-219 37-164 (296)
87 cd04101 RabL4 RabL4 (Rab-like4 99.3 9.9E-12 2.2E-16 111.0 10.1 70 135-219 51-123 (164)
88 COG2262 HflX GTPases [General 99.3 8.9E-11 1.9E-15 116.3 17.5 153 9-220 164-321 (411)
89 cd04120 Rab12 Rab12 subfamily. 99.3 1.3E-11 2.8E-16 114.8 10.9 116 37-218 2-120 (202)
90 cd04107 Rab32_Rab38 Rab38/Rab3 99.3 1.8E-11 4E-16 113.7 11.8 68 136-217 50-124 (201)
91 cd04160 Arfrp1 Arfrp1 subfamil 99.3 2.7E-11 5.9E-16 108.5 12.4 70 135-218 49-122 (167)
92 cd01863 Rab18 Rab18 subfamily. 99.3 3.9E-11 8.4E-16 106.8 13.3 117 37-219 2-122 (161)
93 cd04144 Ras2 Ras2 subfamily. 99.3 2.4E-11 5.3E-16 111.8 12.2 110 136-259 47-162 (190)
94 cd01860 Rab5_related Rab5-rela 99.3 2.8E-11 6.1E-16 107.9 12.3 115 37-217 3-120 (163)
95 cd04154 Arl2 Arl2 subfamily. 99.3 4.3E-11 9.3E-16 108.3 13.4 114 34-218 13-130 (173)
96 cd04111 Rab39 Rab39 subfamily. 99.3 2.6E-11 5.7E-16 113.6 12.2 157 36-257 3-163 (211)
97 cd04114 Rab30 Rab30 subfamily. 99.3 3E-11 6.5E-16 108.5 12.1 120 34-219 6-128 (169)
98 cd04140 ARHI_like ARHI subfami 99.3 2.8E-11 6E-16 108.6 11.8 102 136-252 49-157 (165)
99 cd01864 Rab19 Rab19 subfamily. 99.3 2.6E-11 5.6E-16 108.6 11.5 119 35-219 3-124 (165)
100 cd04108 Rab36_Rab34 Rab34/Rab3 99.3 1.7E-11 3.7E-16 110.8 10.2 116 37-218 2-121 (170)
101 PF04548 AIG1: AIG1 family; I 99.3 1E-11 2.2E-16 116.5 8.9 126 37-220 2-133 (212)
102 cd04124 RabL2 RabL2 subfamily. 99.3 2.9E-11 6.2E-16 108.1 11.3 113 37-216 2-117 (161)
103 cd04159 Arl10_like Arl10-like 99.3 4.7E-11 1E-15 105.1 12.4 113 37-219 1-117 (159)
104 cd01876 YihA_EngB The YihA (En 99.3 4.4E-11 9.6E-16 106.4 12.3 122 37-219 1-126 (170)
105 cd04110 Rab35 Rab35 subfamily. 99.3 2.6E-11 5.6E-16 112.5 10.9 157 35-257 6-164 (199)
106 cd04123 Rab21 Rab21 subfamily. 99.3 5.4E-11 1.2E-15 105.5 12.2 69 136-218 49-120 (162)
107 cd04176 Rap2 Rap2 subgroup. T 99.3 2.8E-11 6E-16 108.1 10.3 115 37-218 3-121 (163)
108 PLN03118 Rab family protein; P 99.3 6.3E-11 1.4E-15 110.9 12.9 159 35-261 14-178 (211)
109 cd04151 Arl1 Arl1 subfamily. 99.3 6E-11 1.3E-15 105.5 12.2 69 136-218 43-115 (158)
110 PF00009 GTP_EFTU: Elongation 99.3 5.3E-12 1.2E-16 116.1 5.4 132 35-216 3-135 (188)
111 cd04125 RabA_like RabA-like su 99.3 5.2E-11 1.1E-15 109.3 11.9 156 36-257 1-159 (188)
112 PF10662 PduV-EutP: Ethanolami 99.2 2.9E-11 6.2E-16 104.6 9.2 68 140-221 40-107 (143)
113 PRK15467 ethanolamine utilizat 99.2 1.1E-10 2.4E-15 104.3 13.4 103 140-257 41-144 (158)
114 smart00178 SAR Sar1p-like memb 99.2 1.6E-10 3.4E-15 105.9 14.6 113 34-217 16-132 (184)
115 cd04158 ARD1 ARD1 subfamily. 99.2 9.6E-11 2.1E-15 105.7 12.9 70 135-218 42-115 (169)
116 cd04147 Ras_dva Ras-dva subfam 99.2 6.8E-11 1.5E-15 109.6 12.1 68 136-217 47-118 (198)
117 cd01893 Miro1 Miro1 subfamily. 99.2 1E-10 2.2E-15 105.1 12.8 114 37-219 2-119 (166)
118 cd04177 RSR1 RSR1 subgroup. R 99.2 8.3E-11 1.8E-15 105.8 12.2 70 136-219 49-122 (168)
119 PTZ00369 Ras-like protein; Pro 99.2 1E-10 2.2E-15 107.5 13.1 116 35-217 5-124 (189)
120 KOG1954 Endocytosis/signaling 99.2 1.5E-10 3.3E-15 112.1 14.5 174 33-225 56-232 (532)
121 TIGR02528 EutP ethanolamine ut 99.2 9.2E-11 2E-15 102.3 12.1 24 37-60 2-25 (142)
122 cd04115 Rab33B_Rab33A Rab33B/R 99.2 5.5E-11 1.2E-15 107.2 10.9 144 36-244 3-150 (170)
123 cd00878 Arf_Arl Arf (ADP-ribos 99.2 1.5E-10 3.3E-15 102.7 13.5 71 135-219 42-116 (158)
124 cd01886 EF-G Elongation factor 99.2 6.3E-11 1.4E-15 115.0 11.8 96 134-246 62-158 (270)
125 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.2 1.1E-10 2.4E-15 105.7 12.6 147 37-254 4-158 (172)
126 cd04116 Rab9 Rab9 subfamily. 99.2 1.1E-10 2.4E-15 105.1 12.3 27 34-60 4-30 (170)
127 cd04162 Arl9_Arfrp2_like Arl9/ 99.2 1.7E-10 3.7E-15 103.6 13.4 112 37-218 1-114 (164)
128 cd04165 GTPBP1_like GTPBP1-lik 99.2 4.6E-11 9.9E-16 112.8 10.0 75 130-218 78-153 (224)
129 cd00876 Ras Ras family. The R 99.2 7.6E-11 1.6E-15 104.4 10.8 115 37-218 1-119 (160)
130 PLN03110 Rab GTPase; Provision 99.2 1.3E-10 2.7E-15 109.4 12.8 118 35-218 12-132 (216)
131 cd04149 Arf6 Arf6 subfamily. 99.2 1.3E-10 2.9E-15 104.7 12.4 113 34-217 8-124 (168)
132 cd04161 Arl2l1_Arl13_like Arl2 99.2 1.4E-10 3.1E-15 104.4 12.4 71 135-219 42-116 (167)
133 cd04166 CysN_ATPS CysN_ATPS su 99.2 2.2E-11 4.7E-16 113.9 7.2 80 121-218 63-145 (208)
134 cd04118 Rab24 Rab24 subfamily. 99.2 9.1E-11 2E-15 108.0 11.3 68 136-218 50-120 (193)
135 cd01884 EF_Tu EF-Tu subfamily. 99.2 3.4E-11 7.4E-16 111.3 8.4 70 133-217 62-132 (195)
136 cd04137 RheB Rheb (Ras Homolog 99.2 1.4E-10 3E-15 105.4 12.3 107 136-256 49-159 (180)
137 cd01891 TypA_BipA TypA (tyrosi 99.2 9.5E-11 2.1E-15 108.2 11.2 69 135-218 64-132 (194)
138 TIGR00491 aIF-2 translation in 99.2 1.9E-10 4.1E-15 122.5 14.8 134 33-217 2-135 (590)
139 KOG1490 GTP-binding protein CR 99.2 3.5E-11 7.6E-16 120.7 8.1 159 2-219 132-297 (620)
140 cd04117 Rab15 Rab15 subfamily. 99.2 1.9E-10 4.2E-15 102.8 12.3 148 37-250 2-152 (161)
141 cd01896 DRG The developmentall 99.2 1.3E-10 2.9E-15 110.5 11.8 24 37-60 2-25 (233)
142 KOG1489 Predicted GTP-binding 99.2 6E-11 1.3E-15 113.2 9.2 126 34-221 195-330 (366)
143 PLN03108 Rab family protein; P 99.2 2.2E-10 4.8E-15 107.2 13.1 148 35-252 6-160 (210)
144 cd00879 Sar1 Sar1 subfamily. 99.2 6.2E-10 1.3E-14 102.1 15.4 113 34-217 18-134 (190)
145 cd04121 Rab40 Rab40 subfamily. 99.2 9.3E-11 2E-15 107.9 9.7 153 34-257 5-164 (189)
146 cd04146 RERG_RasL11_like RERG/ 99.2 1.1E-10 2.4E-15 104.5 9.9 70 136-218 47-121 (165)
147 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.2 2.3E-10 4.9E-15 103.8 11.9 112 35-217 15-130 (174)
148 CHL00189 infB translation init 99.2 1.3E-10 2.8E-15 125.8 12.0 122 32-218 241-362 (742)
149 cd04150 Arf1_5_like Arf1-Arf5- 99.2 3.4E-10 7.3E-15 101.1 12.8 70 135-218 43-116 (159)
150 cd01889 SelB_euk SelB subfamil 99.2 1.8E-10 3.9E-15 106.2 11.2 67 135-218 67-135 (192)
151 TIGR00487 IF-2 translation ini 99.2 2.4E-10 5.2E-15 121.9 13.4 118 32-217 84-201 (587)
152 cd00157 Rho Rho (Ras homology) 99.2 1.1E-10 2.3E-15 104.9 9.1 24 37-60 2-25 (171)
153 cd00877 Ran Ran (Ras-related n 99.2 1.8E-10 3.9E-15 103.6 10.4 104 136-256 49-155 (166)
154 cd04168 TetM_like Tet(M)-like 99.2 1.1E-10 2.4E-15 111.2 9.4 69 134-217 62-130 (237)
155 smart00177 ARF ARF-like small 99.2 6.6E-10 1.4E-14 100.9 14.1 69 136-218 57-129 (175)
156 cd04169 RF3 RF3 subfamily. Pe 99.2 1.4E-10 3E-15 112.5 10.2 136 36-218 3-138 (267)
157 PLN03071 GTP-binding nuclear p 99.2 1.7E-10 3.7E-15 108.8 10.5 155 34-257 12-169 (219)
158 cd01892 Miro2 Miro2 subfamily. 99.2 1.5E-10 3.2E-15 104.5 9.7 120 34-218 3-123 (169)
159 TIGR00475 selB selenocysteine- 99.2 2.1E-10 4.5E-15 122.8 12.3 108 136-258 50-164 (581)
160 cd04148 RGK RGK subfamily. Th 99.2 5.6E-10 1.2E-14 105.4 13.8 108 136-259 50-162 (221)
161 PF05049 IIGP: Interferon-indu 99.2 1.1E-10 2.4E-15 116.5 9.2 132 7-215 17-153 (376)
162 PTZ00133 ADP-ribosylation fact 99.1 8.6E-10 1.9E-14 100.9 14.2 68 136-217 61-132 (182)
163 PLN00223 ADP-ribosylation fact 99.1 8.7E-10 1.9E-14 100.7 14.2 113 35-218 17-133 (181)
164 TIGR00437 feoB ferrous iron tr 99.1 2E-10 4.3E-15 123.0 11.5 110 136-257 41-152 (591)
165 PRK05306 infB translation init 99.1 3.6E-10 7.7E-15 123.5 13.6 156 32-256 287-448 (787)
166 PRK09602 translation-associate 99.1 1.4E-09 2.9E-14 111.0 17.0 39 36-74 2-40 (396)
167 cd04143 Rhes_like Rhes_like su 99.1 6.8E-10 1.5E-14 106.5 13.6 105 136-254 48-165 (247)
168 smart00174 RHO Rho (Ras homolo 99.1 2.4E-10 5.1E-15 103.2 9.8 68 136-218 46-117 (174)
169 cd04132 Rho4_like Rho4-like su 99.1 4.1E-10 9E-15 103.0 11.1 115 37-218 2-120 (187)
170 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.1 1.3E-10 2.9E-15 103.5 7.2 156 33-256 20-181 (221)
171 KOG0448 Mitofusin 1 GTPase, in 99.1 5.6E-09 1.2E-13 108.7 20.1 167 34-222 108-280 (749)
172 cd00882 Ras_like_GTPase Ras-li 99.1 4.9E-10 1.1E-14 96.9 10.3 70 136-219 45-118 (157)
173 TIGR00231 small_GTP small GTP- 99.1 1.1E-09 2.4E-14 95.8 12.6 29 36-65 2-30 (161)
174 cd04128 Spg1 Spg1p. Spg1p (se 99.1 3.9E-10 8.4E-15 103.2 9.9 66 136-216 49-117 (182)
175 cd01874 Cdc42 Cdc42 subfamily. 99.1 4.8E-10 1E-14 101.8 10.5 114 37-218 3-120 (175)
176 cd01850 CDC_Septin CDC/Septin. 99.1 1E-09 2.2E-14 106.9 13.4 138 36-219 5-159 (276)
177 cd04170 EF-G_bact Elongation f 99.1 2.9E-10 6.4E-15 110.5 9.5 70 134-218 62-131 (268)
178 cd01899 Ygr210 Ygr210 subfamil 99.1 9.5E-10 2.1E-14 108.9 12.9 37 38-74 1-37 (318)
179 cd01885 EF2 EF2 (for archaea a 99.1 6.3E-10 1.4E-14 104.8 11.1 67 135-216 72-138 (222)
180 cd04126 Rab20 Rab20 subfamily. 99.1 1.4E-09 2.9E-14 102.5 12.9 68 136-217 44-114 (220)
181 cd04155 Arl3 Arl3 subfamily. 99.1 2.7E-09 5.9E-14 96.1 14.4 114 34-218 13-130 (173)
182 cd04167 Snu114p Snu114p subfam 99.1 7.9E-10 1.7E-14 103.7 10.8 67 135-216 70-136 (213)
183 TIGR01393 lepA GTP-binding pro 99.1 1E-09 2.2E-14 117.7 13.0 132 35-217 3-136 (595)
184 TIGR00993 3a0901s04IAP86 chlor 99.1 9.5E-10 2E-14 115.4 12.3 125 36-218 119-251 (763)
185 cd01888 eIF2_gamma eIF2-gamma 99.1 6.1E-10 1.3E-14 103.7 9.8 67 136-218 83-152 (203)
186 smart00176 RAN Ran (Ras-relate 99.0 1.1E-09 2.3E-14 101.8 10.4 107 136-259 44-153 (200)
187 cd04105 SR_beta Signal recogni 99.0 2.2E-09 4.7E-14 100.0 12.3 116 36-218 1-124 (203)
188 cd01870 RhoA_like RhoA-like su 99.0 1.8E-09 3.9E-14 97.5 11.4 25 36-60 2-26 (175)
189 cd04135 Tc10 TC10 subfamily. 99.0 3.9E-09 8.5E-14 95.2 12.8 24 37-60 2-25 (174)
190 PRK10512 selenocysteinyl-tRNA- 99.0 1.7E-09 3.7E-14 116.2 12.0 109 133-257 48-163 (614)
191 TIGR00484 EF-G translation elo 99.0 8.4E-10 1.8E-14 120.9 9.8 134 34-218 9-142 (689)
192 PRK05433 GTP-binding protein L 99.0 2.2E-09 4.8E-14 115.1 12.6 133 34-217 6-140 (600)
193 CHL00071 tufA elongation facto 99.0 1.7E-09 3.6E-14 111.5 11.2 71 134-219 73-144 (409)
194 cd01871 Rac1_like Rac1-like su 99.0 5.8E-09 1.3E-13 94.6 13.5 115 37-218 3-120 (174)
195 cd04102 RabL3 RabL3 (Rab-like3 99.0 3.3E-09 7.2E-14 98.5 12.0 25 37-61 2-26 (202)
196 cd04130 Wrch_1 Wrch-1 subfamil 99.0 1.9E-09 4.1E-14 97.5 10.2 68 136-218 48-119 (173)
197 cd04133 Rop_like Rop subfamily 99.0 2.3E-09 4.9E-14 97.5 10.3 114 37-218 3-120 (176)
198 PRK04004 translation initiatio 99.0 2E-09 4.4E-14 115.1 11.4 66 136-216 71-136 (586)
199 cd04134 Rho3 Rho3 subfamily. 99.0 1.8E-09 3.9E-14 99.3 9.6 115 37-218 2-119 (189)
200 KOG0078 GTP-binding protein SE 99.0 2.2E-09 4.8E-14 97.3 9.7 153 33-251 10-165 (207)
201 KOG0084 GTPase Rab1/YPT1, smal 99.0 2.2E-09 4.8E-14 96.0 9.3 120 34-219 8-130 (205)
202 PF00071 Ras: Ras family; Int 99.0 1.8E-09 3.8E-14 96.2 8.8 147 37-250 1-151 (162)
203 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.0 6.1E-09 1.3E-13 98.8 12.8 116 34-217 12-131 (232)
204 PRK12317 elongation factor 1-a 99.0 5E-09 1.1E-13 108.6 13.3 143 35-217 6-153 (425)
205 PRK00007 elongation factor G; 99.0 2.9E-09 6.3E-14 116.6 11.4 134 34-218 9-142 (693)
206 PLN03127 Elongation factor Tu; 99.0 2.4E-09 5.1E-14 111.1 10.1 132 34-218 60-192 (447)
207 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.9 6.3E-09 1.4E-13 95.1 10.9 114 36-217 6-123 (182)
208 KOG0092 GTPase Rab5/YPT51 and 98.9 1.2E-09 2.6E-14 97.3 5.6 157 36-259 6-166 (200)
209 cd04131 Rnd Rnd subfamily. Th 98.9 6.7E-09 1.5E-13 94.6 10.7 113 37-217 3-119 (178)
210 cd01875 RhoG RhoG subfamily. 98.9 7.4E-09 1.6E-13 95.4 11.0 115 36-218 4-122 (191)
211 PRK12739 elongation factor G; 98.9 4.2E-09 9.1E-14 115.4 10.9 134 34-218 7-140 (691)
212 COG0536 Obg Predicted GTPase [ 98.9 8.2E-09 1.8E-13 100.0 11.5 124 37-222 161-294 (369)
213 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.9 8.3E-09 1.8E-13 97.3 11.1 114 37-218 3-120 (222)
214 cd01883 EF1_alpha Eukaryotic e 98.9 2.4E-09 5.2E-14 100.9 7.3 80 121-217 63-151 (219)
215 PRK12735 elongation factor Tu; 98.9 4.3E-09 9.2E-14 108.0 9.2 70 134-218 73-143 (396)
216 cd01900 YchF YchF subfamily. 98.9 5.1E-09 1.1E-13 101.3 9.2 37 38-74 1-37 (274)
217 TIGR01394 TypA_BipA GTP-bindin 98.9 3.1E-09 6.8E-14 113.7 8.4 128 36-217 2-130 (594)
218 TIGR02034 CysN sulfate adenyly 98.9 4.9E-09 1.1E-13 107.8 9.3 69 134-218 78-148 (406)
219 PTZ00258 GTP-binding protein; 98.9 8.3E-09 1.8E-13 104.3 10.7 43 34-76 20-62 (390)
220 PRK00741 prfC peptide chain re 98.9 8.8E-09 1.9E-13 108.8 10.9 137 34-217 9-145 (526)
221 COG1163 DRG Predicted GTPase [ 98.9 3.5E-09 7.6E-14 101.7 7.1 104 35-201 63-166 (365)
222 PRK00049 elongation factor Tu; 98.9 3.7E-09 8E-14 108.4 7.9 69 134-217 73-142 (396)
223 PRK12736 elongation factor Tu; 98.9 5.1E-09 1.1E-13 107.3 8.9 70 134-218 73-143 (394)
224 PRK10218 GTP-binding protein; 98.9 3.3E-09 7.1E-14 113.5 7.6 130 34-217 4-134 (607)
225 TIGR00503 prfC peptide chain r 98.9 6.7E-09 1.4E-13 109.7 9.6 137 34-217 10-146 (527)
226 TIGR00485 EF-Tu translation el 98.9 4.2E-09 9.2E-14 108.0 7.9 131 35-218 12-143 (394)
227 TIGR03680 eif2g_arch translati 98.9 7.3E-09 1.6E-13 106.6 9.5 67 136-218 80-149 (406)
228 PRK09601 GTP-binding protein Y 98.9 1.2E-08 2.5E-13 102.1 10.1 39 36-74 3-41 (364)
229 PRK05506 bifunctional sulfate 98.8 4.9E-09 1.1E-13 113.9 8.0 69 133-217 101-171 (632)
230 COG1100 GTPase SAR1 and relate 98.8 1.9E-08 4.1E-13 94.4 10.9 119 36-221 6-129 (219)
231 KOG0093 GTPase Rab3, small G p 98.8 7.6E-09 1.7E-13 87.9 6.6 118 37-219 23-142 (193)
232 TIGR00490 aEF-2 translation el 98.8 1.9E-08 4.1E-13 110.7 11.4 134 34-217 18-152 (720)
233 PRK05124 cysN sulfate adenylyl 98.8 1.2E-08 2.6E-13 106.7 9.4 146 34-218 26-175 (474)
234 PF00025 Arf: ADP-ribosylation 98.8 2E-08 4.3E-13 91.3 9.4 114 34-218 13-130 (175)
235 PRK13351 elongation factor G; 98.8 1.1E-08 2.4E-13 112.3 9.1 133 34-217 7-139 (687)
236 PRK07560 elongation factor EF- 98.8 1.8E-08 4E-13 111.0 10.8 133 34-216 19-152 (731)
237 PF08477 Miro: Miro-like prote 98.8 1.8E-09 4E-14 91.1 2.1 24 37-60 1-24 (119)
238 cd01882 BMS1 Bms1. Bms1 is an 98.8 1.4E-08 3E-13 96.1 8.4 98 131-246 78-179 (225)
239 cd04129 Rho2 Rho2 subfamily. 98.8 3.6E-08 7.9E-13 90.4 10.4 24 37-60 3-26 (187)
240 PLN03126 Elongation factor Tu; 98.8 1.3E-08 2.7E-13 106.3 7.6 132 34-218 80-212 (478)
241 KOG2486 Predicted GTPase [Gene 98.8 4.3E-08 9.3E-13 92.4 10.1 128 34-219 135-264 (320)
242 cd01873 RhoBTB RhoBTB subfamil 98.8 5.5E-08 1.2E-12 90.0 10.7 65 136-217 66-134 (195)
243 PLN00023 GTP-binding protein; 98.7 4.1E-08 8.8E-13 96.4 9.9 27 34-60 20-46 (334)
244 PF09439 SRPRB: Signal recogni 98.7 2.4E-08 5.2E-13 90.3 7.4 118 34-218 2-127 (181)
245 COG0699 Predicted GTPases (dyn 98.7 5.7E-08 1.2E-12 103.8 11.5 330 85-458 2-331 (546)
246 PTZ00416 elongation factor 2; 98.7 4.2E-08 9.2E-13 109.4 10.6 66 136-216 92-157 (836)
247 PRK09435 membrane ATPase/prote 98.7 4.1E-07 8.8E-12 90.4 16.2 25 34-58 55-79 (332)
248 PRK04000 translation initiatio 98.7 4.9E-08 1.1E-12 100.5 10.0 24 35-58 9-32 (411)
249 PLN00116 translation elongatio 98.7 5.7E-08 1.2E-12 108.5 11.1 67 135-216 97-163 (843)
250 PTZ00132 GTP-binding nuclear p 98.7 2.5E-07 5.3E-12 86.8 13.8 100 136-252 58-160 (215)
251 COG0480 FusA Translation elong 98.7 6.8E-08 1.5E-12 104.3 10.8 135 34-218 9-143 (697)
252 TIGR02836 spore_IV_A stage IV 98.7 2.3E-07 5E-12 92.8 13.6 150 36-217 18-194 (492)
253 cd04103 Centaurin_gamma Centau 98.7 1.1E-07 2.4E-12 84.8 10.1 24 37-60 2-25 (158)
254 COG4917 EutP Ethanolamine util 98.7 3.6E-08 7.7E-13 81.9 6.2 104 36-218 2-105 (148)
255 TIGR00483 EF-1_alpha translati 98.7 9.3E-08 2E-12 99.2 11.0 68 134-217 83-155 (426)
256 KOG1145 Mitochondrial translat 98.7 2.1E-07 4.6E-12 94.9 12.9 146 32-247 150-300 (683)
257 PTZ00327 eukaryotic translatio 98.7 1.1E-07 2.4E-12 98.6 10.4 24 36-59 35-58 (460)
258 KOG0073 GTP-binding ADP-ribosy 98.7 4.6E-07 1E-11 78.8 12.3 157 35-262 16-180 (185)
259 PF00735 Septin: Septin; Inte 98.6 5.4E-08 1.2E-12 94.9 7.4 139 37-219 6-158 (281)
260 PTZ00141 elongation factor 1- 98.6 6.9E-08 1.5E-12 100.3 8.2 66 133-215 82-157 (446)
261 COG0532 InfB Translation initi 98.6 2.7E-07 5.8E-12 94.7 12.2 118 33-218 3-122 (509)
262 KOG0075 GTP-binding ADP-ribosy 98.6 5.3E-07 1.1E-11 76.9 11.6 114 36-218 21-137 (186)
263 KOG0394 Ras-related GTPase [Ge 98.6 4.6E-08 1E-12 86.6 4.6 119 34-217 8-132 (210)
264 KOG0095 GTPase Rab30, small G 98.6 1.6E-07 3.4E-12 80.1 7.6 121 34-219 6-128 (213)
265 COG2229 Predicted GTPase [Gene 98.6 9.2E-07 2E-11 78.7 12.7 137 33-227 8-147 (187)
266 cd04178 Nucleostemin_like Nucl 98.6 1E-07 2.2E-12 86.3 6.2 31 35-65 117-147 (172)
267 cd01858 NGP_1 NGP-1. Autoanti 98.5 1.2E-07 2.6E-12 84.5 5.9 28 36-63 103-130 (157)
268 KOG0091 GTPase Rab39, small G 98.5 1.8E-07 3.9E-12 81.1 6.6 152 36-256 9-169 (213)
269 PRK12740 elongation factor G; 98.5 1.5E-07 3.2E-12 103.2 7.6 70 134-218 58-127 (668)
270 cd01849 YlqF_related_GTPase Yl 98.5 2.2E-07 4.9E-12 82.5 6.6 39 34-72 99-138 (155)
271 KOG0080 GTPase Rab18, small G 98.5 1.7E-07 3.6E-12 81.1 5.2 117 34-216 10-130 (209)
272 KOG0098 GTPase Rab2, small G p 98.5 5.7E-07 1.2E-11 79.9 8.5 121 34-219 5-127 (216)
273 TIGR01425 SRP54_euk signal rec 98.5 2.7E-06 5.8E-11 87.1 14.5 80 136-226 183-262 (429)
274 TIGR00750 lao LAO/AO transport 98.4 1.2E-05 2.5E-10 79.5 18.0 25 34-58 33-57 (300)
275 KOG0410 Predicted GTP binding 98.4 1.4E-06 3.1E-11 83.8 10.9 127 32-217 175-308 (410)
276 PLN00043 elongation factor 1-a 98.4 5.5E-07 1.2E-11 93.6 8.3 70 133-216 82-158 (447)
277 cd01857 HSR1_MMR1 HSR1/MMR1. 98.4 7E-07 1.5E-11 78.0 6.8 25 36-60 84-108 (141)
278 COG5019 CDC3 Septin family pro 98.4 3.2E-06 7E-11 83.1 11.3 82 136-219 82-178 (373)
279 KOG0395 Ras-related GTPase [Ge 98.4 2.2E-06 4.8E-11 79.2 9.6 117 35-218 3-123 (196)
280 cd01855 YqeH YqeH. YqeH is an 98.4 5.7E-07 1.2E-11 82.7 5.6 25 36-60 128-152 (190)
281 KOG2655 Septin family protein 98.3 2.8E-06 6.1E-11 84.1 10.4 83 136-220 79-175 (366)
282 KOG0087 GTPase Rab11/YPT3, sma 98.3 2.4E-06 5.1E-11 77.6 9.0 120 33-218 12-134 (222)
283 cd01851 GBP Guanylate-binding 98.3 3.3E-06 7.2E-11 79.8 10.0 37 34-70 6-45 (224)
284 KOG1486 GTP-binding protein DR 98.3 4.4E-07 9.6E-12 84.2 3.7 91 35-186 62-152 (364)
285 KOG0070 GTP-binding ADP-ribosy 98.3 2.8E-06 6.1E-11 75.7 8.2 151 35-257 17-175 (181)
286 TIGR03596 GTPase_YlqF ribosome 98.3 1.2E-06 2.7E-11 85.4 6.5 31 34-64 117-147 (276)
287 KOG0079 GTP-binding protein H- 98.2 1.6E-06 3.5E-11 74.0 5.5 119 34-219 7-128 (198)
288 PRK09563 rbgA GTPase YlqF; Rev 98.2 1.5E-06 3.3E-11 85.3 6.3 30 34-63 120-149 (287)
289 PRK11889 flhF flagellar biosyn 98.2 1.3E-05 2.7E-10 80.7 12.5 81 136-227 321-401 (436)
290 PF00448 SRP54: SRP54-type pro 98.2 1.8E-06 3.9E-11 79.8 5.5 81 136-227 84-164 (196)
291 KOG1707 Predicted Ras related/ 98.2 8.9E-06 1.9E-10 84.0 10.5 119 34-220 8-132 (625)
292 COG1161 Predicted GTPases [Gen 98.2 1.7E-06 3.6E-11 86.2 4.8 32 36-72 133-164 (322)
293 PRK10416 signal recognition pa 98.2 1.8E-05 3.9E-10 78.6 12.0 84 135-227 196-283 (318)
294 PRK13768 GTPase; Provisional 98.2 1.7E-05 3.7E-10 76.4 11.2 75 136-219 97-178 (253)
295 KOG0090 Signal recognition par 98.2 6.5E-06 1.4E-10 75.0 7.6 70 137-219 83-161 (238)
296 cd01856 YlqF YlqF. Proteins o 98.1 3.9E-06 8.4E-11 75.9 6.3 28 34-61 114-141 (171)
297 PRK14974 cell division protein 98.1 6.7E-06 1.5E-10 82.0 8.3 81 136-227 223-303 (336)
298 PRK12289 GTPase RsgA; Reviewed 98.1 5.2E-06 1.1E-10 83.4 7.3 26 37-62 174-199 (352)
299 KOG1547 Septin CDC10 and relat 98.1 7.4E-06 1.6E-10 75.8 7.5 133 36-217 47-198 (336)
300 PRK14723 flhF flagellar biosyn 98.1 3.5E-05 7.6E-10 83.9 13.8 151 37-227 187-347 (767)
301 KOG3883 Ras family small GTPas 98.1 4.5E-05 9.8E-10 65.7 11.5 128 34-226 8-141 (198)
302 COG5256 TEF1 Translation elong 98.1 3.8E-06 8.2E-11 83.8 5.7 81 121-218 71-160 (428)
303 PRK14721 flhF flagellar biosyn 98.1 4.2E-05 9.1E-10 78.4 13.5 81 136-227 270-350 (420)
304 KOG0462 Elongation factor-type 98.1 8.7E-06 1.9E-10 83.4 8.3 134 34-218 59-192 (650)
305 TIGR00092 GTP-binding protein 98.1 1.6E-05 3.5E-10 79.8 9.8 38 36-73 3-41 (368)
306 PRK12288 GTPase RsgA; Reviewed 98.1 1.1E-05 2.4E-10 81.1 8.7 25 37-61 207-231 (347)
307 KOG1532 GTPase XAB1, interacts 98.1 2.3E-05 5E-10 74.0 10.1 152 34-219 18-197 (366)
308 KOG0086 GTPase Rab4, small G p 98.1 8E-06 1.7E-10 70.2 6.3 121 34-219 8-130 (214)
309 PRK06731 flhF flagellar biosyn 98.1 9.9E-05 2.1E-09 71.5 14.7 81 136-227 155-235 (270)
310 COG0012 Predicted GTPase, prob 98.1 1.4E-05 2.9E-10 79.3 8.8 38 36-73 3-40 (372)
311 PRK13796 GTPase YqeH; Provisio 98.1 6.4E-06 1.4E-10 83.6 6.6 24 36-59 161-184 (365)
312 TIGR00157 ribosome small subun 98.1 1.3E-05 2.8E-10 76.8 8.4 25 36-60 121-145 (245)
313 PRK14722 flhF flagellar biosyn 98.1 3.2E-05 6.9E-10 78.1 11.3 24 35-58 137-160 (374)
314 cd03112 CobW_like The function 98.0 2.9E-05 6.3E-10 69.2 9.7 23 36-58 1-23 (158)
315 PRK12726 flagellar biosynthesi 98.0 6.1E-05 1.3E-09 75.6 12.5 153 35-227 206-366 (407)
316 PF03193 DUF258: Protein of un 98.0 4.9E-06 1.1E-10 73.9 4.3 25 36-60 36-60 (161)
317 COG4108 PrfC Peptide chain rel 98.0 2.6E-05 5.6E-10 78.1 9.6 137 35-218 12-148 (528)
318 cd03114 ArgK-like The function 98.0 4.1E-05 8.9E-10 67.5 9.9 22 37-58 1-22 (148)
319 PRK00771 signal recognition pa 98.0 0.00011 2.4E-09 75.9 14.3 81 136-227 176-256 (437)
320 KOG0081 GTPase Rab27, small G 98.0 2.2E-06 4.8E-11 74.0 1.5 106 136-254 67-175 (219)
321 COG1217 TypA Predicted membran 98.0 1.2E-05 2.7E-10 80.8 6.9 134 33-219 3-136 (603)
322 TIGR03597 GTPase_YqeH ribosome 98.0 1.5E-05 3.2E-10 80.8 7.5 24 36-59 155-178 (360)
323 PRK05703 flhF flagellar biosyn 98.0 0.0001 2.3E-09 76.1 13.6 82 136-227 300-381 (424)
324 PRK14845 translation initiatio 98.0 3.1E-05 6.6E-10 87.3 10.2 68 135-217 525-592 (1049)
325 PRK12724 flagellar biosynthesi 98.0 7.2E-05 1.6E-09 76.2 11.9 83 136-227 300-383 (432)
326 PTZ00099 rab6; Provisional 98.0 2E-05 4.4E-10 71.6 7.3 116 135-265 28-147 (176)
327 PRK12723 flagellar biosynthesi 98.0 0.00012 2.5E-09 74.6 13.5 155 35-227 174-336 (388)
328 PF03029 ATP_bind_1: Conserved 98.0 1.6E-05 3.5E-10 75.7 6.9 75 136-218 91-171 (238)
329 KOG1424 Predicted GTP-binding 97.9 6.7E-06 1.5E-10 83.7 4.1 27 34-60 313-339 (562)
330 KOG4252 GTP-binding protein [S 97.9 2.3E-06 5E-11 75.4 0.6 69 137-219 70-140 (246)
331 KOG0468 U5 snRNP-specific prot 97.9 4.3E-05 9.3E-10 79.8 9.4 134 34-216 127-262 (971)
332 KOG1491 Predicted GTP-binding 97.9 3.3E-05 7.1E-10 75.1 8.0 104 34-184 19-125 (391)
333 PF03308 ArgK: ArgK protein; 97.9 0.00017 3.7E-09 68.4 12.6 37 15-58 16-52 (266)
334 cd01859 MJ1464 MJ1464. This f 97.9 5.2E-05 1.1E-09 67.2 8.2 27 34-60 100-126 (156)
335 KOG0097 GTPase Rab14, small G 97.9 6E-05 1.3E-09 63.9 7.6 119 35-219 11-132 (215)
336 PRK10867 signal recognition pa 97.8 0.00043 9.4E-09 71.4 15.4 81 136-227 184-264 (433)
337 PF04670 Gtr1_RagA: Gtr1/RagA 97.8 6.7E-05 1.4E-09 71.0 8.5 119 37-219 1-127 (232)
338 KOG1144 Translation initiation 97.8 0.0001 2.2E-09 78.0 10.4 132 32-216 472-605 (1064)
339 cd01854 YjeQ_engC YjeQ/EngC. 97.8 8.9E-05 1.9E-09 72.8 9.5 25 36-60 162-186 (287)
340 PRK00098 GTPase RsgA; Reviewed 97.8 7.1E-05 1.5E-09 73.9 8.5 25 36-60 165-189 (298)
341 PRK12727 flagellar biosynthesi 97.8 0.00019 4E-09 75.1 11.8 80 136-227 429-508 (559)
342 TIGR00064 ftsY signal recognit 97.8 0.0002 4.4E-09 69.7 11.2 83 136-227 155-241 (272)
343 COG1162 Predicted GTPases [Gen 97.8 6.3E-05 1.4E-09 73.0 7.3 24 35-58 164-187 (301)
344 COG5192 BMS1 GTP-binding prote 97.7 0.00015 3.2E-09 74.6 9.4 112 34-220 67-180 (1077)
345 COG0050 TufB GTPases - transla 97.7 0.00023 4.9E-09 68.1 10.0 131 35-219 12-144 (394)
346 COG0481 LepA Membrane GTPase L 97.7 0.0001 2.2E-09 74.6 7.8 134 34-218 8-143 (603)
347 KOG0088 GTPase Rab21, small G 97.7 0.00011 2.4E-09 63.6 6.5 118 36-219 14-134 (218)
348 cd03115 SRP The signal recogni 97.7 0.00031 6.7E-09 63.4 9.7 79 136-225 83-161 (173)
349 KOG1143 Predicted translation 97.6 3.7E-05 8.1E-10 75.3 3.6 144 37-219 169-319 (591)
350 KOG1487 GTP-binding protein DR 97.6 6.1E-05 1.3E-09 70.6 4.6 101 35-201 59-162 (358)
351 COG3276 SelB Selenocysteine-sp 97.6 0.00026 5.6E-09 71.4 9.0 108 136-259 50-161 (447)
352 KOG2484 GTPase [General functi 97.6 6.7E-05 1.5E-09 74.4 4.3 33 34-66 251-283 (435)
353 COG0541 Ffh Signal recognition 97.6 0.0015 3.2E-08 66.2 13.8 79 136-225 183-261 (451)
354 TIGR03348 VI_IcmF type VI secr 97.6 0.00049 1.1E-08 80.0 12.0 56 7-64 83-138 (1169)
355 COG1703 ArgK Putative periplas 97.6 0.0033 7.2E-08 60.7 15.4 25 34-58 50-74 (323)
356 COG1419 FlhF Flagellar GTP-bin 97.6 0.0012 2.7E-08 66.5 13.0 161 35-239 203-372 (407)
357 TIGR00959 ffh signal recogniti 97.5 0.00057 1.2E-08 70.5 10.9 81 136-227 183-263 (428)
358 TIGR00101 ureG urease accessor 97.5 0.00084 1.8E-08 62.2 10.8 23 36-58 2-24 (199)
359 KOG0074 GTP-binding ADP-ribosy 97.5 0.00038 8.3E-09 59.3 7.4 116 34-218 16-134 (185)
360 PRK06995 flhF flagellar biosyn 97.5 0.0014 3E-08 68.5 12.4 91 136-239 335-425 (484)
361 TIGR00073 hypB hydrogenase acc 97.5 0.00033 7.1E-09 65.4 7.1 25 34-58 21-45 (207)
362 KOG0467 Translation elongation 97.4 0.00026 5.6E-09 75.3 6.7 129 34-215 8-136 (887)
363 COG3640 CooC CO dehydrogenase 97.4 0.0028 6.2E-08 59.1 12.6 87 136-246 134-222 (255)
364 KOG0071 GTP-binding ADP-ribosy 97.4 0.0014 3.1E-08 55.9 9.7 123 35-227 17-144 (180)
365 KOG0076 GTP-binding ADP-ribosy 97.4 0.00019 4.2E-09 63.3 4.6 112 135-259 68-186 (197)
366 KOG0458 Elongation factor 1 al 97.4 0.00014 3.1E-09 75.3 4.0 84 120-220 240-332 (603)
367 KOG0077 Vesicle coat complex C 97.4 0.00081 1.8E-08 59.0 7.9 124 15-219 8-137 (193)
368 COG5257 GCD11 Translation init 97.4 0.00037 8E-09 67.4 6.3 45 36-82 11-55 (415)
369 KOG0461 Selenocysteine-specifi 97.3 0.002 4.4E-08 62.9 10.9 66 136-220 70-139 (522)
370 KOG0393 Ras-related small GTPa 97.3 0.00015 3.3E-09 66.2 2.9 117 36-218 5-124 (198)
371 KOG0464 Elongation factor G [T 97.3 0.00039 8.5E-09 69.1 5.9 135 33-218 35-169 (753)
372 KOG2485 Conserved ATP/GTP bind 97.3 0.00025 5.4E-09 68.5 4.2 26 34-59 142-167 (335)
373 PRK10463 hydrogenase nickel in 97.2 0.0017 3.6E-08 63.3 9.0 25 34-58 103-127 (290)
374 PF05879 RHD3: Root hair defec 97.2 0.00068 1.5E-08 74.8 6.7 24 41-65 1-24 (742)
375 KOG0072 GTP-binding ADP-ribosy 97.0 0.0017 3.7E-08 55.6 6.3 73 134-219 60-135 (182)
376 KOG4181 Uncharacterized conser 97.0 0.067 1.5E-06 52.6 17.8 27 33-59 186-212 (491)
377 KOG2203 GTP-binding protein [G 97.0 0.0025 5.3E-08 65.8 8.0 28 33-60 35-62 (772)
378 KOG0465 Mitochondrial elongati 97.0 0.0022 4.7E-08 67.0 7.5 134 34-218 38-171 (721)
379 COG2895 CysN GTPases - Sulfate 96.9 0.0055 1.2E-07 60.3 9.8 144 34-221 5-157 (431)
380 KOG3859 Septins (P-loop GTPase 96.9 0.0022 4.8E-08 60.9 6.7 134 36-219 43-192 (406)
381 KOG0083 GTPase Rab26/Rab37, sm 96.7 0.00037 7.9E-09 58.7 -0.1 70 136-218 47-118 (192)
382 PRK01889 GTPase RsgA; Reviewed 96.5 0.0044 9.6E-08 62.7 6.2 25 36-60 196-220 (356)
383 PRK11537 putative GTP-binding 96.4 0.013 2.9E-07 58.3 8.9 25 34-58 3-27 (318)
384 KOG0780 Signal recognition par 96.3 0.0071 1.5E-07 60.2 5.8 79 135-224 183-261 (483)
385 COG0552 FtsY Signal recognitio 96.2 0.026 5.6E-07 55.6 9.3 83 136-226 222-307 (340)
386 COG1101 PhnK ABC-type uncharac 96.2 0.0042 9.1E-08 57.3 3.6 29 35-64 32-60 (263)
387 KOG0463 GTP-binding protein GP 96.2 0.011 2.3E-07 58.5 6.3 24 36-59 134-157 (641)
388 COG1341 Predicted GTPase or GT 96.1 0.052 1.1E-06 54.8 11.0 25 34-58 72-96 (398)
389 cd01859 MJ1464 MJ1464. This f 96.1 0.012 2.6E-07 51.9 6.0 53 163-217 3-55 (156)
390 COG5258 GTPBP1 GTPase [General 96.1 0.012 2.6E-07 58.5 6.2 67 137-219 202-271 (527)
391 KOG2423 Nucleolar GTPase [Gene 96.0 0.007 1.5E-07 60.3 3.9 25 36-60 308-332 (572)
392 cd01858 NGP_1 NGP-1. Autoanti 96.0 0.018 3.9E-07 51.0 6.4 52 166-219 2-55 (157)
393 KOG0460 Mitochondrial translat 96.0 0.024 5.1E-07 55.7 7.4 130 37-219 56-186 (449)
394 COG1136 SalX ABC-type antimicr 95.9 0.0073 1.6E-07 56.7 3.7 52 161-213 149-202 (226)
395 COG3840 ThiQ ABC-type thiamine 95.9 0.0074 1.6E-07 54.3 3.3 31 35-66 25-55 (231)
396 PF13555 AAA_29: P-loop contai 95.8 0.0094 2E-07 44.0 3.2 23 36-58 24-46 (62)
397 cd00071 GMPK Guanosine monopho 95.8 0.0093 2E-07 51.7 3.6 33 38-72 2-38 (137)
398 KOG1534 Putative transcription 95.7 0.018 4E-07 52.8 5.3 76 136-218 98-179 (273)
399 cd03280 ABC_MutS2 MutS2 homolo 95.7 0.15 3.3E-06 47.1 11.5 20 37-56 30-49 (200)
400 PF13521 AAA_28: AAA domain; P 95.6 0.0068 1.5E-07 54.1 2.2 22 37-58 1-22 (163)
401 PF00005 ABC_tran: ABC transpo 95.5 0.0098 2.1E-07 51.1 2.8 24 36-59 12-35 (137)
402 TIGR03499 FlhF flagellar biosy 95.5 0.08 1.7E-06 51.8 9.5 23 36-58 195-217 (282)
403 PF03205 MobB: Molybdopterin g 95.5 0.01 2.2E-07 51.8 2.8 23 36-58 1-23 (140)
404 KOG2749 mRNA cleavage and poly 95.5 0.19 4E-06 49.9 11.7 55 14-77 85-139 (415)
405 COG1116 TauB ABC-type nitrate/ 95.5 0.014 3E-07 55.2 3.8 28 36-64 30-57 (248)
406 TIGR02868 CydC thiol reductant 95.4 0.03 6.4E-07 59.9 6.7 49 162-212 478-527 (529)
407 cd01130 VirB11-like_ATPase Typ 95.4 0.012 2.7E-07 53.7 3.3 30 36-67 26-55 (186)
408 TIGR03263 guanyl_kin guanylate 95.4 0.016 3.5E-07 52.4 3.8 37 37-73 3-40 (180)
409 COG0488 Uup ATPase components 95.3 0.093 2E-06 55.8 9.8 36 35-72 29-64 (530)
410 PRK13695 putative NTPase; Prov 95.3 0.077 1.7E-06 47.8 8.0 22 37-58 2-23 (174)
411 COG4107 PhnK ABC-type phosphon 95.3 0.015 3.3E-07 51.8 3.2 32 36-69 33-64 (258)
412 cd03225 ABC_cobalt_CbiO_domain 95.2 0.02 4.3E-07 53.3 3.8 22 37-58 29-50 (211)
413 PF06858 NOG1: Nucleolar GTP-b 95.2 0.041 8.9E-07 39.8 4.5 53 162-214 2-58 (58)
414 cd03243 ABC_MutS_homologs The 95.2 0.36 7.8E-06 44.6 12.2 22 37-58 31-52 (202)
415 PRK00300 gmk guanylate kinase; 95.1 0.018 3.9E-07 53.3 3.5 38 36-73 6-44 (205)
416 TIGR03796 NHPM_micro_ABC1 NHPM 95.1 0.32 6.8E-06 54.1 13.8 49 161-212 622-670 (710)
417 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.1 0.021 4.5E-07 50.0 3.6 23 37-59 28-50 (144)
418 TIGR03596 GTPase_YlqF ribosome 95.1 0.039 8.5E-07 53.8 5.9 52 163-218 12-63 (276)
419 cd03261 ABC_Org_Solvent_Resist 95.1 0.02 4.3E-07 54.3 3.7 22 37-58 28-49 (235)
420 TIGR01360 aden_kin_iso1 adenyl 95.1 0.017 3.6E-07 52.5 3.0 23 34-56 2-24 (188)
421 KOG0469 Elongation factor 2 [T 95.1 0.027 6E-07 57.7 4.7 66 136-216 98-163 (842)
422 TIGR01166 cbiO cobalt transpor 95.1 0.022 4.7E-07 52.1 3.7 23 37-59 20-42 (190)
423 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.1 0.021 4.5E-07 53.4 3.6 22 37-58 32-53 (218)
424 KOG1533 Predicted GTPase [Gene 95.0 0.071 1.5E-06 49.8 6.9 20 38-57 5-24 (290)
425 COG0410 LivF ABC-type branched 95.0 0.021 4.6E-07 53.3 3.5 23 36-58 30-52 (237)
426 cd03264 ABC_drug_resistance_li 95.0 0.021 4.5E-07 53.2 3.5 23 36-58 26-48 (211)
427 cd01857 HSR1_MMR1 HSR1/MMR1. 95.0 0.031 6.8E-07 48.5 4.4 53 164-218 3-57 (141)
428 TIGR02475 CobW cobalamin biosy 95.0 0.12 2.5E-06 52.1 9.0 25 34-58 3-27 (341)
429 COG1135 AbcC ABC-type metal io 95.0 0.083 1.8E-06 51.5 7.4 48 163-212 150-200 (339)
430 PRK13541 cytochrome c biogenes 94.9 0.024 5.3E-07 52.1 3.7 24 36-59 27-50 (195)
431 cd03222 ABC_RNaseL_inhibitor T 94.9 0.024 5.1E-07 51.5 3.5 24 36-59 26-49 (177)
432 cd03224 ABC_TM1139_LivF_branch 94.9 0.024 5.2E-07 53.1 3.7 23 37-59 28-50 (222)
433 COG0194 Gmk Guanylate kinase [ 94.9 0.018 3.8E-07 52.1 2.6 37 36-72 5-41 (191)
434 cd03218 ABC_YhbG The ABC trans 94.9 0.025 5.3E-07 53.5 3.8 23 37-59 28-50 (232)
435 cd03226 ABC_cobalt_CbiO_domain 94.9 0.024 5.3E-07 52.5 3.7 24 36-59 27-50 (205)
436 cd03215 ABC_Carb_Monos_II This 94.9 0.026 5.7E-07 51.3 3.8 24 36-59 27-50 (182)
437 cd03265 ABC_DrrA DrrA is the A 94.9 0.025 5.4E-07 53.0 3.7 23 36-58 27-49 (220)
438 PRK14737 gmk guanylate kinase; 94.9 0.03 6.5E-07 51.3 4.0 38 35-72 4-42 (186)
439 PRK13851 type IV secretion sys 94.9 0.022 4.7E-07 57.3 3.4 33 35-69 162-194 (344)
440 TIGR02673 FtsE cell division A 94.9 0.026 5.7E-07 52.6 3.8 23 37-59 30-52 (214)
441 TIGR00960 3a0501s02 Type II (G 94.9 0.026 5.6E-07 52.8 3.7 23 36-58 30-52 (216)
442 cd03259 ABC_Carb_Solutes_like 94.9 0.026 5.6E-07 52.6 3.7 22 37-58 28-49 (213)
443 cd03258 ABC_MetN_methionine_tr 94.8 0.027 5.9E-07 53.3 3.8 22 37-58 33-54 (233)
444 cd03269 ABC_putative_ATPase Th 94.8 0.027 5.8E-07 52.4 3.7 22 37-58 28-49 (210)
445 cd03263 ABC_subfamily_A The AB 94.8 0.027 5.8E-07 52.8 3.7 23 37-59 30-52 (220)
446 cd03229 ABC_Class3 This class 94.8 0.028 6.1E-07 50.9 3.7 22 37-58 28-49 (178)
447 cd03292 ABC_FtsE_transporter F 94.8 0.028 6E-07 52.4 3.6 22 37-58 29-50 (214)
448 PRK13543 cytochrome c biogenes 94.8 0.028 6.1E-07 52.5 3.6 28 37-66 39-66 (214)
449 PRK13540 cytochrome c biogenes 94.7 0.029 6.4E-07 51.8 3.7 24 36-59 28-51 (200)
450 cd03231 ABC_CcmA_heme_exporter 94.7 0.03 6.6E-07 51.7 3.8 23 36-58 27-49 (201)
451 PRK11629 lolD lipoprotein tran 94.7 0.028 6E-07 53.2 3.6 22 37-58 37-58 (233)
452 cd03293 ABC_NrtD_SsuB_transpor 94.7 0.029 6.3E-07 52.6 3.7 23 37-59 32-54 (220)
453 cd03262 ABC_HisP_GlnQ_permease 94.7 0.03 6.6E-07 52.1 3.8 22 37-58 28-49 (213)
454 cd03266 ABC_NatA_sodium_export 94.7 0.03 6.4E-07 52.4 3.7 22 37-58 33-54 (218)
455 cd03369 ABCC_NFT1 Domain 2 of 94.7 0.03 6.5E-07 52.0 3.7 30 36-67 35-64 (207)
456 cd03254 ABCC_Glucan_exporter_l 94.7 0.03 6.6E-07 52.7 3.8 23 37-59 31-53 (229)
457 TIGR02315 ABC_phnC phosphonate 94.7 0.029 6.3E-07 53.4 3.7 23 37-59 30-52 (243)
458 TIGR03608 L_ocin_972_ABC putat 94.7 0.031 6.6E-07 51.8 3.7 23 37-59 26-48 (206)
459 COG1120 FepC ABC-type cobalami 94.7 0.029 6.4E-07 53.7 3.6 23 36-58 29-51 (258)
460 cd03219 ABC_Mj1267_LivG_branch 94.7 0.03 6.6E-07 53.0 3.7 22 37-58 28-49 (236)
461 cd03216 ABC_Carb_Monos_I This 94.7 0.034 7.3E-07 49.7 3.7 24 36-59 27-50 (163)
462 cd00267 ABC_ATPase ABC (ATP-bi 94.7 0.034 7.3E-07 49.2 3.7 31 36-68 26-56 (157)
463 cd02019 NK Nucleoside/nucleoti 94.7 0.031 6.6E-07 42.3 2.9 21 38-58 2-22 (69)
464 PRK09563 rbgA GTPase YlqF; Rev 94.6 0.051 1.1E-06 53.4 5.2 52 163-218 15-66 (287)
465 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.6 0.031 6.7E-07 53.1 3.6 29 36-66 30-58 (238)
466 PRK11174 cysteine/glutathione 94.6 0.05 1.1E-06 58.9 5.6 26 36-63 377-402 (588)
467 cd03256 ABC_PhnC_transporter A 94.6 0.033 7.1E-07 53.0 3.7 23 37-59 29-51 (241)
468 cd03257 ABC_NikE_OppD_transpor 94.6 0.034 7.4E-07 52.3 3.8 24 36-59 32-55 (228)
469 PRK15177 Vi polysaccharide exp 94.6 0.035 7.6E-07 51.9 3.8 31 36-68 14-44 (213)
470 smart00010 small_GTPase Small 94.6 0.13 2.9E-06 42.7 7.0 24 37-60 2-25 (124)
471 cd03230 ABC_DR_subfamily_A Thi 94.6 0.036 7.7E-07 50.0 3.7 23 37-59 28-50 (173)
472 PRK13651 cobalt transporter AT 94.6 0.032 7E-07 55.3 3.7 29 37-67 35-63 (305)
473 PRK10751 molybdopterin-guanine 94.6 0.026 5.6E-07 51.0 2.7 25 34-58 5-29 (173)
474 PRK14250 phosphate ABC transpo 94.6 0.034 7.5E-07 53.0 3.8 22 37-58 31-52 (241)
475 PF13191 AAA_16: AAA ATPase do 94.6 0.032 6.9E-07 50.3 3.4 25 34-58 23-47 (185)
476 cd03223 ABCD_peroxisomal_ALDP 94.5 0.037 8.1E-07 49.5 3.8 22 37-58 29-50 (166)
477 PRK11124 artP arginine transpo 94.5 0.034 7.3E-07 53.0 3.7 24 36-59 29-52 (242)
478 PRK10895 lipopolysaccharide AB 94.5 0.035 7.5E-07 52.9 3.8 23 36-58 30-52 (241)
479 cd03236 ABC_RNaseL_inhibitor_d 94.5 0.035 7.6E-07 53.5 3.8 31 36-68 27-57 (255)
480 TIGR02211 LolD_lipo_ex lipopro 94.5 0.035 7.7E-07 52.0 3.8 24 36-59 32-55 (221)
481 PRK01889 GTPase RsgA; Reviewed 94.5 0.041 8.8E-07 55.8 4.4 48 170-218 110-157 (356)
482 cd03301 ABC_MalK_N The N-termi 94.5 0.035 7.6E-07 51.7 3.7 23 37-59 28-50 (213)
483 COG0523 Putative GTPases (G3E 94.5 0.44 9.5E-06 47.5 11.5 25 35-59 1-25 (323)
484 PRK13539 cytochrome c biogenes 94.5 0.037 7.9E-07 51.5 3.8 24 36-59 29-52 (207)
485 COG4559 ABC-type hemin transpo 94.5 0.037 7.9E-07 51.2 3.6 28 36-64 28-55 (259)
486 cd03268 ABC_BcrA_bacitracin_re 94.5 0.035 7.6E-07 51.5 3.6 24 36-59 27-50 (208)
487 cd03253 ABCC_ATM1_transporter 94.5 0.035 7.5E-07 52.6 3.7 24 36-59 28-51 (236)
488 cd03235 ABC_Metallic_Cations A 94.5 0.036 7.8E-07 51.6 3.7 23 37-59 27-49 (213)
489 PF13207 AAA_17: AAA domain; P 94.5 0.029 6.3E-07 47.0 2.8 22 37-58 1-22 (121)
490 cd03246 ABCC_Protease_Secretio 94.5 0.037 8E-07 49.9 3.6 24 36-59 29-52 (173)
491 KOG0057 Mitochondrial Fe/S clu 94.5 0.14 3E-06 53.6 8.0 57 160-218 493-551 (591)
492 cd03260 ABC_PstB_phosphate_tra 94.5 0.031 6.8E-07 52.6 3.3 24 36-59 27-50 (227)
493 PRK10908 cell division protein 94.5 0.036 7.8E-07 52.0 3.7 29 36-66 29-57 (222)
494 PRK15112 antimicrobial peptide 94.5 0.036 7.9E-07 53.7 3.7 22 37-58 41-62 (267)
495 TIGR03410 urea_trans_UrtE urea 94.5 0.038 8.2E-07 52.2 3.8 24 36-59 27-50 (230)
496 TIGR03864 PQQ_ABC_ATP ABC tran 94.5 0.036 7.8E-07 52.6 3.6 23 37-59 29-51 (236)
497 PRK11248 tauB taurine transpor 94.5 0.037 8.1E-07 53.3 3.8 23 37-59 29-51 (255)
498 cd01855 YqeH YqeH. YqeH is an 94.5 0.15 3.2E-06 46.5 7.7 55 161-219 23-77 (190)
499 PRK13538 cytochrome c biogenes 94.4 0.039 8.5E-07 51.1 3.8 24 36-59 28-51 (204)
500 cd03297 ABC_ModC_molybdenum_tr 94.4 0.04 8.6E-07 51.4 3.7 24 36-59 24-47 (214)
No 1
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=100.00 E-value=5.9e-79 Score=644.96 Aligned_cols=450 Identities=47% Similarity=0.690 Sum_probs=423.4
Q ss_pred ChhhhhHHHHHHHHHHHHHHhccCCCCCCccCCCCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeec
Q 012559 1 MATMTSLIGLINKIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQT 80 (461)
Q Consensus 1 ~~~~~~l~~~~~~lq~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~ 80 (461)
|..|+.+|+.+|++||++..+|... ++.+|+|+|||+||+||||+||+++|++|+|||+|+|||+|++++|.+.
T Consensus 1 ~~~~~~li~~vn~lqd~~~~l~~~~------~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~ 74 (657)
T KOG0446|consen 1 RGLMRLLIPLSNPLQDKLEILGSSS------FIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIV 74 (657)
T ss_pred CchhhhccccchHHHHHHHHhcCCC------cccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccc
Confidence 5689999999999999999998322 3689999999999999999999999999999999999999999999998
Q ss_pred CCC-Ccchhhh-cCCCCcccChHHHHHHHHHHhhhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccH
Q 012559 81 EGG-TDYAEFL-HAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESI 158 (461)
Q Consensus 81 ~~~-~~~~~~~-~~~~~~~~d~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~ 158 (461)
... .+|++|. |.+++.++||++++++|+.++++..|.++++|+.+|.+++++|++++||+||+||++++++++||.++
T Consensus 75 ~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di 154 (657)
T KOG0446|consen 75 AGGDEEEASFLTHDKKKRFTDFEEVRKEIRSETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDI 154 (657)
T ss_pred cCCcccchhccccccccccCCHHHHHHHHHhhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccH
Confidence 776 8999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCccCCCccHHHHHhCcccccCCCee
Q 012559 159 VEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWV 238 (461)
Q Consensus 159 ~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~ 238 (461)
+.++++|++.|+..+++|||+|++||.|+++++++++|+++||.|.||++|+||+|++++|++..+++.|..+++++||+
T Consensus 155 ~~qI~~mi~~yi~~~~~iILav~~an~d~ats~alkiarevDp~g~RTigvitK~DlmdkGt~~~~~L~g~~~~l~~g~v 234 (657)
T KOG0446|consen 155 EEEIKSMIEEYIEKPNRIILAVTPANSDIATSPALVVAREVDPGGSRTLEVITKFDFMDKGTNAVTRLVGRPITLKVGYV 234 (657)
T ss_pred HHHHHHHHHHhccccchhhhhccchhhhhhcCHHHHHHHhhCCCccchhHHhhhHHhhhcCCcceeeecCCcccccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCChhhhcccccHHHHHHHHHhhhccCCCCccchhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 012559 239 GIVNRSQADINKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERVIRQRIPSIIALINKNIDEINAELD 318 (461)
Q Consensus 239 ~v~~~s~~~~~~~~~~~~~~~~E~~ff~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~~L~ 318 (461)
+|+||++++++...+...+...|..||.+++.|..+..++|+++|.+.|+..|..||++++|.+...|+..+.+.++++.
T Consensus 235 ~vvnR~q~di~~~k~~~~al~~e~~~f~~~p~y~~~~~~~g~p~La~~L~~~l~~hi~~~lP~l~~~i~~~~~~~~~el~ 314 (657)
T KOG0446|consen 235 GVVNRSQSIIDFKKSILEALNDEVPSFESVPSYPILLTISGVPYLALLLPGYLQSHIRDQLPELKTKINKLLEKYQDELN 314 (657)
T ss_pred eeeccchhhhhhhhhHHHHHHhhhhhhhccccccccccccCcchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred HhCCCCCCChhHHHHHHHHHHHHHHHHHHHHhcCC---c-----cCCchhHhhhhchhHHHhccCCcccccchhhHHHHH
Q 012559 319 RIGRPIGVDSGAQLYTILEMCRAFERVFKEHLDGG---R-----AGGDRIYGVFDHQLPAALKKLPFDRHLSTRNVQKVV 390 (461)
Q Consensus 319 ~lg~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~g~---~-----~gg~~i~~~f~~~~~~~~~~~~~~~~~~~~~i~~~i 390 (461)
++|. ..+..+....++.+++.|+..+...+.|. + +||+|++++|++.|+..+.++++++.+...+|++++
T Consensus 315 ~~g~--~~~~~~~~~~ll~~i~~~~~~~~~~v~g~~~~~~~~elsggari~~~F~~~f~~~i~~i~~~~~~~~~~i~~~i 392 (657)
T KOG0446|consen 315 RIGA--VDVDLANSAALLAIIREDPRGLRTGVIGKLDLVPTKALSGGARINYPFHGGFPGVIKKLPPDRKLLGQNIEKLV 392 (657)
T ss_pred Hhcc--cCCccchhhHHHHHHHHHHHHHHHhhcccccccchhcccchhhhhhhhhhccchhhhcCCcchhhhHHHHHHHH
Confidence 9996 22223344456677777877777777776 1 589999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCCChHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHhhhhhhccchHhHHHHhcc
Q 012559 391 SEADGYQPHLIAPEQGYRRLIDGSISYFKGPAEASVDAVHFVLKELVRKSIAETEQQKLWKNFVMKAGK 459 (461)
Q Consensus 391 ~~~~g~~p~~~~pe~~f~~li~~~i~~l~~P~~~c~~~v~~~l~~~v~~~~~~~~~~~rfp~l~~~~~~ 459 (461)
.|++|++|++|+|+.+||.+|++||+++++|+++|++.|+.++.+++.+|.... +|.|||.|+.++.+
T Consensus 393 ~~~~G~~~~lf~p~~afe~lvk~~i~~l~~p~l~~v~~v~~el~~~~~~~~~~~-~l~rfp~l~~~~~~ 460 (657)
T KOG0446|consen 393 SEASGIRPSLFVPESSFESLVKGQIQSLRDPSLKCVEEVHRELVRIVADSIRAT-ELKRFPVLYSELVE 460 (657)
T ss_pred HhccCCCccccCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhH-HHHHhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987653 89999999998754
No 2
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=100.00 E-value=1e-48 Score=369.13 Aligned_cols=239 Identities=62% Similarity=0.976 Sum_probs=223.6
Q ss_pred hhhHHHHHHHHHHHHHHhccCCCCCCccCCCCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCC
Q 012559 4 MTSLIGLINKIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGG 83 (461)
Q Consensus 4 ~~~l~~~~~~lq~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~ 83 (461)
|+.|++++|+|+++++.+|.+. ++++|+|+|||++|+||||+||+|+|..++|++.|.|||||++|++++. .
T Consensus 1 ~~~~~~l~~~i~~l~~~~G~~~------~i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~--~ 72 (240)
T smart00053 1 MEKLIPLVNKLQDAFSALGQEK------DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINS--S 72 (240)
T ss_pred CccHHHHHHHHHHHHHHcCCCC------CCCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCC--C
Confidence 7999999999999999998543 2689999999999999999999999999899999999999999999874 4
Q ss_pred CcchhhhcCCCCcccChHHHHHHHHHHhhhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHH
Q 012559 84 TDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIE 163 (461)
Q Consensus 84 ~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~ 163 (461)
++|+.+.+.+++.+.|++++.+.|++.++...|.+++||+++|+++|++|++++++||||||+.+.+..+|+.++...++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~ 152 (240)
T smart00053 73 TEYAEFLHCKGKKFTDFDEVRNEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIK 152 (240)
T ss_pred CcceEEEecCCcccCCHHHHHHHHHHHHHHhcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHH
Confidence 67899998888999999999999999999998888999999999999999999999999999998777777778888999
Q ss_pred HHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCccCCCccHHHHHhCcccccCCCeeEEEeC
Q 012559 164 NMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNR 243 (461)
Q Consensus 164 ~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~ 243 (461)
+++..|++++++|||+|++++.|+.+++++++++.+++.+.||++|+||+|.+++++++.++++|+.+++++||++|+||
T Consensus 153 ~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~~~~~~~~~~~~~~~~~~l~~g~~~v~nr 232 (240)
T smart00053 153 DMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLDLMDEGTDARDILENKLLPLRRGYIGVVNR 232 (240)
T ss_pred HHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCCCCCccHHHHHHHhCCccccCCCEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred Chhhhcc
Q 012559 244 SQADINK 250 (461)
Q Consensus 244 s~~~~~~ 250 (461)
|+++++.
T Consensus 233 ~~~d~~~ 239 (240)
T smart00053 233 SQKDIEG 239 (240)
T ss_pred ChHHhhc
Confidence 9998653
No 3
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=100.00 E-value=2.5e-41 Score=332.56 Aligned_cols=235 Identities=29% Similarity=0.475 Sum_probs=212.1
Q ss_pred HHHHhCcccccCCCeeEEEeCChhhhcccccHHHHHHHHHhhhccCCCCccchhccchHHHHHHHHHHHHHHHHHhhHHH
Q 012559 223 LEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERVIRQRIPSI 302 (461)
Q Consensus 223 ~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~E~~ff~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l 302 (461)
.++++|+.+++++||++|+|||++++..+.+..+++..|..||.++++|+..++++|+++|+.+|+++|.+||+++||.+
T Consensus 2 ~~iL~n~~~pLklGy~~V~nrsq~di~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~~~L~~~I~~~LP~l 81 (295)
T PF01031_consen 2 MDILRNKVIPLKLGYVGVKNRSQQDINDGKSIEEARQKEKEFFSNHPWYSSPADRCGTPALRKRLSELLVEHIRKSLPSL 81 (295)
T ss_dssp HHHHTTSSS--TT-EEEE--S-HHHHHTTEEHHHHHHHHHHHHHHSTTTGGGGGGSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhCCCeeccCCCeEEEecCCccccccCCCHHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHHHHHHHHHhCcHH
Confidence 58899999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHHhcCCcc---------CCchhHhhhhchhHHHhc
Q 012559 303 IALINKNIDEINAELDRIGRPIGVDSGAQLYTILEMCRAFERVFKEHLDGGRA---------GGDRIYGVFDHQLPAALK 373 (461)
Q Consensus 303 ~~~i~~~l~~~~~~L~~lg~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~g~~~---------gg~~i~~~f~~~~~~~~~ 373 (461)
+.+|+..+.+++.+|.+||++++.+.+++..+|++++++|++.+.++++|.+. ||++|.++|++.|...+.
T Consensus 82 ~~~I~~~l~~~~~eL~~lG~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~G~~~~~~~~~~l~~~ari~~~f~~~~~~~~~ 161 (295)
T PF01031_consen 82 KSEIQKKLQEAEKELKRLGPPRPETPEEQRAYLLQIISKFSRIFKDAIDGEYSDEFSTNELRGGARIRYIFNEWFDKFLE 161 (295)
T ss_dssp HHHHHHHHHHHHHHHHTHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHTT-------TTS--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccchhhHHHHHHHhhhhhhhh
Confidence 99999999999999999999998777888899999999999999999999986 589999999999999999
Q ss_pred cCCcccccchhhHHHHHHhhcCCCCCCCCChHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHhhhhhhccchHhH
Q 012559 374 KLPFDRHLSTRNVQKVVSEADGYQPHLIAPEQGYRRLIDGSISYFKGPAEASVDAVHFVLKELVRKSIAETEQQKLWKNF 453 (461)
Q Consensus 374 ~~~~~~~~~~~~i~~~i~~~~g~~p~~~~pe~~f~~li~~~i~~l~~P~~~c~~~v~~~l~~~v~~~~~~~~~~~rfp~l 453 (461)
.++++..+++++|+++|+|++|+++++|+|+.+|+.||+++|++|++||..|++.|+.++.+++.+++. ++|.|||+|
T Consensus 162 ~~~~~~~~~~~eI~~~i~~~~G~elp~f~p~~afe~Li~~~i~~l~~Pa~~cv~~V~~~l~~i~~~~~~--~~~~~fp~L 239 (295)
T PF01031_consen 162 KIDPFEDLSDEEIRTAIRNSRGRELPGFVPESAFESLIRKQIEKLEEPALQCVEEVHEELQRIVEQVLE--KEFERFPNL 239 (295)
T ss_dssp HTSHHHHHHHHHHHHHHHH--S-SSS-SCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHC--HHHTTSHHH
T ss_pred hhccccchhHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcc--hhcCCchHH
Confidence 999888899999999999999999999999999999999999999999999999999999999998865 489999999
Q ss_pred HHHhcc
Q 012559 454 VMKAGK 459 (461)
Q Consensus 454 ~~~~~~ 459 (461)
++++..
T Consensus 240 ~~~i~~ 245 (295)
T PF01031_consen 240 KEAIKE 245 (295)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998753
No 4
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=100.00 E-value=4.6e-32 Score=269.27 Aligned_cols=291 Identities=28% Similarity=0.449 Sum_probs=226.0
Q ss_pred hHHHHHHHHHHHHHHhccCCCCCCccCCCCCEEEEECCCCCCHHHHHHHhhCCCCCccCCC-ccccccEEEEEeecCCCC
Q 012559 6 SLIGLINKIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHQTEGGT 84 (461)
Q Consensus 6 ~l~~~~~~lq~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~ 84 (461)
+||......-|+++.- + .+..+. -.||+|||||+||+||||+||.+....+||||+| ++||.|..+.|..++.
T Consensus 283 SLIDMYSEVLD~Ls~Y--D-~sYnt~-DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPy-- 356 (980)
T KOG0447|consen 283 SLIDMYSEVLDVLSDY--D-ASYNTQ-DHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPH-- 356 (980)
T ss_pred HHHHHHHHHHHHHhcc--c-cccccc-ccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcc--
Confidence 4555555555555432 2 233222 4899999999999999999999999999999999 7999999999865432
Q ss_pred cchhhhcCCC----CcccChHHHHHHHHHHhhhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHH
Q 012559 85 DYAEFLHAPR----KKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVE 160 (461)
Q Consensus 85 ~~~~~~~~~~----~~~~d~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~ 160 (461)
-.+.|....+ .+..|+.+++.+++-.+......++++|+..|.+.+.||+.+.++|||+||+++..+.+...+..+
T Consensus 357 HVAqFrDSsREfDLTKE~DLq~LR~e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd 436 (980)
T KOG0447|consen 357 HVALFKDSSREFDLTKEEDLAALRHEIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKE 436 (980)
T ss_pred hhhhhccccccccccchhHHHHHHHHHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchH
Confidence 2233333222 234688899999987777666668999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCccCCC----ccHHHHHhCcccccC-C
Q 012559 161 DIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKG----TNALEVLEGRSYRLQ-H 235 (461)
Q Consensus 161 ~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~----~~~~~~l~~~~~~l~-~ 235 (461)
.|..|.+.||++||+||||+.+.+.|...+..-.++..+||.|.|||+|+||+|+.++. ..+.+++.|+.++.+ +
T Consensus 437 ~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLFPMKAL 516 (980)
T KOG0447|consen 437 TIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFPMKAL 516 (980)
T ss_pred HHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCccchhhc
Confidence 89999999999999999999999999999998899999999999999999999998653 246789999988876 7
Q ss_pred CeeEEEeCChhhhcccccHHHHHHHHHhhhccCCCCcc---chhccchHHHHHHHHHHHHHHHHHhhHHHHHH
Q 012559 236 PWVGIVNRSQADINKNVDMIAARRKEREYFETSPEYGH---LASKMGSEYLAKLLSQHLERVIRQRIPSIIAL 305 (461)
Q Consensus 236 g~~~v~~~s~~~~~~~~~~~~~~~~E~~ff~~~~~~~~---~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~ 305 (461)
||++|+.-.+. ..-++..-+.-|..||.+...... .+..+.+.+|.-.+++-++..+++.+-.....
T Consensus 517 GYfaVVTGrGn---ssdSIdaIR~YEE~FF~nSkLl~~~vlkphQvTtRNlSLAVSDcFWkMVResiEqQaDa 586 (980)
T KOG0447|consen 517 GYFAVVTGKGN---SSESIEAIREYEEEFFQNSKLLKTSMLKAHQVTTRNLSLAVSDCFWKMVRESVEQQADS 586 (980)
T ss_pred ceeEEEecCCC---cchhHHHHHHHHHHHhhhhHHHHhhccchhhhcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999863321 222333445678899998765543 13556666777777777777777666544433
No 5
>COG1159 Era GTPase [General function prediction only]
Probab=99.92 E-value=3.5e-25 Score=209.62 Aligned_cols=236 Identities=22% Similarity=0.353 Sum_probs=186.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
....|++||.||+|||||+|+|+|.++ .++|+.|. | ++++
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~Ki-----sIvS~k~Q------T-----------------------------TR~~ 44 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKI-----SIVSPKPQ------T-----------------------------TRNR 44 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCce-----EeecCCcc------h-----------------------------hhhh
Confidence 568999999999999999999999999 89999985 1 4566
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
+.| |...+..+++||||||++.. ...+.+.+...+++.+...| +||+|+++...+...+..
T Consensus 45 I~G-------------I~t~~~~QiIfvDTPGih~p-----k~~l~~~m~~~a~~sl~dvD-lilfvvd~~~~~~~~d~~ 105 (298)
T COG1159 45 IRG-------------IVTTDNAQIIFVDTPGIHKP-----KHALGELMNKAARSALKDVD-LILFVVDADEGWGPGDEF 105 (298)
T ss_pred eeE-------------EEEcCCceEEEEeCCCCCCc-----chHHHHHHHHHHHHHhccCc-EEEEEEeccccCCccHHH
Confidence 677 77777899999999999996 35677888999999999999 688888998877776654
Q ss_pred HHHHHhCCCCCceEEEeccCCccCCCccHHHHHhCcccccCCCeeEEEeCChh---hhcccccHHHHHHHHHhhhccCCC
Q 012559 194 KLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQA---DINKNVDMIAARRKEREYFETSPE 270 (461)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~---~~~~~~~~~~~~~~E~~ff~~~~~ 270 (461)
++..+.....|.|+++||+|...+...+..+.. .+....+|..+++.|+. +++...+.+...+.|.+||++.+.
T Consensus 106 -il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~--~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~yp~d~ 182 (298)
T COG1159 106 -ILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIA--FLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEGPWYYPEDQ 182 (298)
T ss_pred -HHHHHhhcCCCeEEEEEccccCCcHHHHHHHHH--HHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCCCCCcCChhh
Confidence 566666666899999999999987754445444 45566677788888876 444566666777889999999988
Q ss_pred CccchhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHH
Q 012559 271 YGHLASKMGSEYLAKLLSQHLERVIRQRIPSIIALINKNIDEINAELDRIGRPIGVDSGAQLYT 334 (461)
Q Consensus 271 ~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~~L~~lg~~~~~~~~~~~~~ 334 (461)
+++.+.++ ...+.++|.++...+++||+........++..+..+..+...+..++++|+.+
T Consensus 183 itD~~~rf---~~aEiiREk~~~~l~eElPhsv~VeIe~~~~~~~~~~~I~a~I~Ver~sQK~I 243 (298)
T COG1159 183 ITDRPERF---LAAEIIREKLLLLLREELPHSVAVEIEEFEEREKGLLKIHATIYVERESQKGI 243 (298)
T ss_pred ccCChHHH---HHHHHHHHHHHHhcccccCceEEEEEEEEEecCCCeEEEEEEEEEecCCccce
Confidence 89888887 55678888888899999999887655555555566666666666666666543
No 6
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.90 E-value=7.1e-23 Score=184.63 Aligned_cols=166 Identities=36% Similarity=0.510 Sum_probs=134.4
Q ss_pred EEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCC--cchhhhcCCCCcccChHHHHHHHHHHhhhhc
Q 012559 38 VAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGT--DYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (461)
Q Consensus 38 IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~--~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 115 (461)
|+|+|.+|||||||||+|+|.+++|++.+.||++|++++..+.+... .+..........+.++.++.+.+........
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 79999999999999999999999999999999999999998776533 1111112224566789999998888777777
Q ss_pred CCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHH
Q 012559 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (461)
Q Consensus 116 g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 195 (461)
+....++...+.+....+...+++||||||+....... ..++.+|+.+.| ++++|++++.++..++...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~---------~~~~~~~~~~~d-~vi~V~~~~~~~~~~~~~~l 150 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEH---------TEITEEYLPKAD-VVIFVVDANQDLTESDMEFL 150 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTT---------SHHHHHHHSTTE-EEEEEEETTSTGGGHHHHHH
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhh---------HHHHHHhhccCC-EEEEEeccCcccchHHHHHH
Confidence 66677888899999999999999999999997743211 378999997777 78888899999999999989
Q ss_pred HHHhCCCCCceEEEeccC
Q 012559 196 AREVDPTGERTFGVLTKL 213 (461)
Q Consensus 196 ~~~~d~~~~rti~VltK~ 213 (461)
.+..++...++|+|+||+
T Consensus 151 ~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 151 KQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp HHHHTTTCSSEEEEEE-G
T ss_pred HHHhcCCCCeEEEEEcCC
Confidence 999999999999999995
No 7
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.83 E-value=3.3e-20 Score=180.43 Aligned_cols=233 Identities=17% Similarity=0.193 Sum_probs=144.3
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 115 (461)
..|+++|.+|+|||||+|+|+|.++ .+++..|.. +.....
T Consensus 1 g~V~liG~pnvGKSTLln~L~~~~~-----~~vs~~~~T-----------------------------------Tr~~i~ 40 (270)
T TIGR00436 1 GFVAILGRPNVGKSTLLNQLHGQKI-----SITSPKAQT-----------------------------------TRNRIS 40 (270)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcE-----eecCCCCCc-----------------------------------ccCcEE
Confidence 3699999999999999999999986 333333320 001111
Q ss_pred CCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHH
Q 012559 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (461)
Q Consensus 116 g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 195 (461)
| +...+..++.|+||||+... ...+.+.+...+.+++.++|. +++|+|++...... ..+
T Consensus 41 ~-------------i~~~~~~qii~vDTPG~~~~-----~~~l~~~~~~~~~~~l~~aDv-vl~VvD~~~~~~~~--~~i 99 (270)
T TIGR00436 41 G-------------IHTTGASQIIFIDTPGFHEK-----KHSLNRLMMKEARSAIGGVDL-ILFVVDSDQWNGDG--EFV 99 (270)
T ss_pred E-------------EEEcCCcEEEEEECcCCCCC-----cchHHHHHHHHHHHHHhhCCE-EEEEEECCCCCchH--HHH
Confidence 2 33333457899999999864 233444556667889999995 55666666433322 334
Q ss_pred HHHhCCCCCceEEEeccCCccCCCccHHHHHhCcccccCC-CeeEEEeCChhhhcccccHHHHHHHHHhhhccCCCCccc
Q 012559 196 AREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQH-PWVGIVNRSQADINKNVDMIAARRKEREYFETSPEYGHL 274 (461)
Q Consensus 196 ~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~-g~~~v~~~s~~~~~~~~~~~~~~~~E~~ff~~~~~~~~~ 274 (461)
...+...+.|+++|+||+|+..+. ...+.+......... .++.+....+.++++..+.+...+.+.+|+++....++.
T Consensus 100 ~~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~t~~ 178 (270)
T TIGR00436 100 LTKLQNLKRPVVLTRNKLDNKFKD-KLLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLPEGPFRYPEDYVTDQ 178 (270)
T ss_pred HHHHHhcCCCEEEEEECeeCCCHH-HHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCC
Confidence 455555678999999999997443 222222100001111 455566666666666666666666777777777666766
Q ss_pred hhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHH
Q 012559 275 ASKMGSEYLAKLLSQHLERVIRQRIPSIIALINKNIDEINAELDRIGRPIGVDSGAQLY 333 (461)
Q Consensus 275 ~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~~L~~lg~~~~~~~~~~~~ 333 (461)
+.++ ...+.+++.++.++++++||........++..+.....+...+...+++|+.
T Consensus 179 ~~~~---~~~e~ire~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~i~~~i~v~~~s~k~ 234 (270)
T TIGR00436 179 PDRF---KISEIIREKIIRYTKEEIPHSVRVEIERKSFNEKGLLKIHALISVERESQKK 234 (270)
T ss_pred CHHH---HHHHHHHHHHHHhcccccCceEEEEEEEEEECCCCeEEEEEEEEECcCCcee
Confidence 6655 6678888999999999999988766555544321222233333344444444
No 8
>PRK00089 era GTPase Era; Reviewed
Probab=99.79 E-value=5.9e-19 Score=173.68 Aligned_cols=233 Identities=23% Similarity=0.343 Sum_probs=142.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
+...|+|+|.+|||||||+|+|+|.++ .+++..|.. ++..
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~-----~~vs~~~~t-----------------------------------t~~~ 43 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKI-----SIVSPKPQT-----------------------------------TRHR 43 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCce-----eecCCCCCc-----------------------------------cccc
Confidence 467899999999999999999999987 334433320 0111
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
..| +...+..+++|+||||+.... ....+.+...+..++.++|+ +++|+++...+...+ .
T Consensus 44 i~~-------------i~~~~~~qi~~iDTPG~~~~~-----~~l~~~~~~~~~~~~~~~D~-il~vvd~~~~~~~~~-~ 103 (292)
T PRK00089 44 IRG-------------IVTEDDAQIIFVDTPGIHKPK-----RALNRAMNKAAWSSLKDVDL-VLFVVDADEKIGPGD-E 103 (292)
T ss_pred EEE-------------EEEcCCceEEEEECCCCCCch-----hHHHHHHHHHHHHHHhcCCE-EEEEEeCCCCCChhH-H
Confidence 112 333334789999999998742 33445566777888999995 555666665444333 3
Q ss_pred HHHHHhCCCCCceEEEeccCCccCCCccHHHHHhCcccccCCCeeEEEeCCh---hhhcccccHHHHHHHHHhhhccCCC
Q 012559 194 KLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQ---ADINKNVDMIAARRKEREYFETSPE 270 (461)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~---~~~~~~~~~~~~~~~E~~ff~~~~~ 270 (461)
.+++.+...+.|.++|+||+|+..........+. .+....++..+++.|+ .++.+..+.+.....+.+++++...
T Consensus 104 ~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~--~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~~~~y~~~~ 181 (292)
T PRK00089 104 FILEKLKKVKTPVILVLNKIDLVKDKEELLPLLE--ELSELMDFAEIVPISALKGDNVDELLDVIAKYLPEGPPYYPEDQ 181 (292)
T ss_pred HHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHH--HHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCC
Confidence 3555555557899999999999844333333332 1222233444444444 4444555555555555566666555
Q ss_pred CccchhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHH
Q 012559 271 YGHLASKMGSEYLAKLLSQHLERVIRQRIPSIIALINKNIDEINAELDRIGRPIGVDSGAQLY 333 (461)
Q Consensus 271 ~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~~L~~lg~~~~~~~~~~~~ 333 (461)
.++.+.+. ...+.+++.++.++++++||..+.....+++. ....+...+...+++|+.
T Consensus 182 ~td~~~r~---~~~EiiRe~~~~~l~~e~p~~~~v~~~~~~~~--~~~~i~~~i~v~~~~~k~ 239 (292)
T PRK00089 182 ITDRPERF---LAAEIIREKLLRLLGDELPYSVAVEIEKFEER--GLVRIEATIYVERDSQKG 239 (292)
T ss_pred CCCCCHHH---HHHHHHHHHHHhhCCccCCceEEEEEEEEEEC--CeEEEEEEEEEccCCcee
Confidence 55555443 55678889999999999999876555444432 222233334444444443
No 9
>PRK15494 era GTPase Era; Provisional
Probab=99.78 E-value=1.6e-18 Score=173.62 Aligned_cols=234 Identities=18% Similarity=0.254 Sum_probs=149.0
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
...|++||.+|+|||||+|+|+|..+ .+++..|. + +++..
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~~~k~-----~ivs~k~~------t-----------------------------Tr~~~ 91 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRIIGEKL-----SIVTPKVQ------T-----------------------------TRSII 91 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCCce-----eeccCCCC------C-----------------------------ccCcE
Confidence 34899999999999999999999876 33333331 0 00001
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHH
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 194 (461)
.| +...+..++.||||||+.... ..+...+...+..++.++|.+++ |+++...+...+ ..
T Consensus 92 ~~-------------~~~~~~~qi~~~DTpG~~~~~-----~~l~~~~~r~~~~~l~~aDvil~-VvD~~~s~~~~~-~~ 151 (339)
T PRK15494 92 TG-------------IITLKDTQVILYDTPGIFEPK-----GSLEKAMVRCAWSSLHSADLVLL-IIDSLKSFDDIT-HN 151 (339)
T ss_pred EE-------------EEEeCCeEEEEEECCCcCCCc-----ccHHHHHHHHHHHHhhhCCEEEE-EEECCCCCCHHH-HH
Confidence 11 122233578999999997531 33444455566677889996554 556654444332 22
Q ss_pred HHHHhCCCCCceEEEeccCCccCCCc-cHHHHHhCcccccCCCeeEEEeCChhhhcccccHHHHHHHHHhhhccCCCCcc
Q 012559 195 LAREVDPTGERTFGVLTKLDLMDKGT-NALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARRKEREYFETSPEYGH 273 (461)
Q Consensus 195 l~~~~d~~~~rti~VltK~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~E~~ff~~~~~~~~ 273 (461)
++..+...+.+.|+|+||+|+.+... +..+.+. .......++.+...++.++++.++.+...+.|.+|+++...+++
T Consensus 152 il~~l~~~~~p~IlViNKiDl~~~~~~~~~~~l~--~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~~~~td 229 (339)
T PRK15494 152 ILDKLRSLNIVPIFLLNKIDIESKYLNDIKAFLT--ENHPDSLLFPISALSGKNIDGLLEYITSKAKISPWLYAEDDITD 229 (339)
T ss_pred HHHHHHhcCCCEEEEEEhhcCccccHHHHHHHHH--hcCCCcEEEEEeccCccCHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 44555555678899999999864321 1222221 11111235566666667777888888888889999999888888
Q ss_pred chhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHH
Q 012559 274 LASKMGSEYLAKLLSQHLERVIRQRIPSIIALINKNIDEINAELDRIGRPIGVDSGAQLY 333 (461)
Q Consensus 274 ~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~~L~~lg~~~~~~~~~~~~ 333 (461)
.+.++ ...+.++|.++.++++++||..+.....+++.+.....+...+...+++|+.
T Consensus 230 ~~~~~---~~~eiiRe~~~~~~~~EiP~~~~v~i~~~~~~~~~~~~i~~~i~v~~~sqk~ 286 (339)
T PRK15494 230 LPMRF---IAAEITREQLFLNLQKELPYKLTVQTEKWEDLKDKSVKINQVIVVSRESYKT 286 (339)
T ss_pred CCHHH---HHHHHHHHHHHhhCCcccCceEEEEEEEEEEcCCCeEEEEEEEEECCCCcee
Confidence 87766 5678888899999999999988776666654332232344444444555543
No 10
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.72 E-value=1.7e-17 Score=156.53 Aligned_cols=220 Identities=15% Similarity=0.224 Sum_probs=137.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+|||.||+|||||.|.++|.++.|++..+-| ++.+
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~T----------------------------------------Tr~~ 110 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHT----------------------------------------TRHR 110 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCCccccccccccc----------------------------------------eeee
Confidence 567999999999999999999999999655544311 2333
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCC--CccccHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPAN--QDIATSD 191 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~--~d~~~~~ 191 (461)
+.| +.+.+..++.|+||||+.......+ ..+...+..-.+..+.++|+++ +|+|+. .......
T Consensus 111 ilg-------------i~ts~eTQlvf~DTPGlvs~~~~r~-~~l~~s~lq~~~~a~q~AD~vv-Vv~Das~tr~~l~p~ 175 (379)
T KOG1423|consen 111 ILG-------------IITSGETQLVFYDTPGLVSKKMHRR-HHLMMSVLQNPRDAAQNADCVV-VVVDASATRTPLHPR 175 (379)
T ss_pred eeE-------------EEecCceEEEEecCCcccccchhhh-HHHHHHhhhCHHHHHhhCCEEE-EEEeccCCcCccChH
Confidence 456 7777789999999999998643321 1222223445778888999655 444544 2333345
Q ss_pred HHHHHHHhCCCCCceEEEeccCCccCCCccH---HHHHhCcc--------------------cccCCCe---eEEEeCC-
Q 012559 192 AIKLAREVDPTGERTFGVLTKLDLMDKGTNA---LEVLEGRS--------------------YRLQHPW---VGIVNRS- 244 (461)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~~---~~~l~~~~--------------------~~l~~g~---~~v~~~s- 244 (461)
.+.+.+++. ..+.|+|+||+|...+...+ .+.+.+.. ++-..|| ..|+..|
T Consensus 176 vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSa 253 (379)
T KOG1423|consen 176 VLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSA 253 (379)
T ss_pred HHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEec
Confidence 566667664 57899999999998655322 22222111 1222345 3445544
Q ss_pred --hhhhcccccHHHHHHHHHhhhccCCCCccchhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 012559 245 --QADINKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERVIRQRIPSIIALINKNIDEI 313 (461)
Q Consensus 245 --~~~~~~~~~~~~~~~~E~~ff~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~ 313 (461)
+.++.+...++...+...+|.+.....++- .......+.+++.|.+|+.+++||-.+.-...+++.
T Consensus 254 L~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~---s~e~l~~e~VReklLd~~pqEVPY~lq~~i~~w~e~ 321 (379)
T KOG1423|consen 254 LYGEGIKDLKQYLMSQAPPGPWKYPADIVTEE---SPEFLCSESVREKLLDHLPQEVPYNLQVRILSWKER 321 (379)
T ss_pred ccccCHHHHHHHHHhcCCCCCCCCCccccccc---CHHHHHHHHHHHHHHhhCccccCcceEEEEEEeeec
Confidence 455555555555555555555544333332 223344577888888899999999766544444443
No 11
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.72 E-value=6e-18 Score=149.31 Aligned_cols=119 Identities=25% Similarity=0.435 Sum_probs=78.9
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhcC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 116 (461)
+|+++|.||+|||||+|+|+|.+. . ++..|. . +.+...|
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~-~-----v~n~pG---------------------~--------------Tv~~~~g 40 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQ-K-----VGNWPG---------------------T--------------TVEKKEG 40 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSE-E-----EEESTT---------------------S--------------SSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-e-----ecCCCC---------------------C--------------CeeeeeE
Confidence 699999999999999999999974 1 122221 0 0011111
Q ss_pred CCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhc--CCCeEEEEEecCCCccccHHHHH
Q 012559 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE--KPSCIILAISPANQDIATSDAIK 194 (461)
Q Consensus 117 ~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~--~~~~iIL~V~~a~~d~~~~~~l~ 194 (461)
...-....+.||||||+++.. +.+.+ +.++++|+. ++| +|++|+||+. .+..+.
T Consensus 41 -------------~~~~~~~~~~lvDlPG~ysl~----~~s~e---e~v~~~~l~~~~~D-~ii~VvDa~~---l~r~l~ 96 (156)
T PF02421_consen 41 -------------IFKLGDQQVELVDLPGIYSLS----SKSEE---ERVARDYLLSEKPD-LIIVVVDATN---LERNLY 96 (156)
T ss_dssp -------------EEEETTEEEEEEE----SSSS----SSSHH---HHHHHHHHHHTSSS-EEEEEEEGGG---HHHHHH
T ss_pred -------------EEEecCceEEEEECCCcccCC----CCCcH---HHHHHHHHhhcCCC-EEEEECCCCC---HHHHHH
Confidence 111123688999999998864 33333 566778874 677 5777777763 456677
Q ss_pred HHHHhCCCCCceEEEeccCCccCCCc
Q 012559 195 LAREVDPTGERTFGVLTKLDLMDKGT 220 (461)
Q Consensus 195 l~~~~d~~~~rti~VltK~D~~~~~~ 220 (461)
++.++...|.|+++|+||+|...+..
T Consensus 97 l~~ql~e~g~P~vvvlN~~D~a~~~g 122 (156)
T PF02421_consen 97 LTLQLLELGIPVVVVLNKMDEAERKG 122 (156)
T ss_dssp HHHHHHHTTSSEEEEEETHHHHHHTT
T ss_pred HHHHHHHcCCCEEEEEeCHHHHHHcC
Confidence 88888888999999999999986553
No 12
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.68 E-value=2.7e-16 Score=157.32 Aligned_cols=155 Identities=27% Similarity=0.353 Sum_probs=110.0
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 115 (461)
|.|++||.||+|||||+|+|+|.+. .++...|.. ++++.-
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~-----AIV~D~pGv-----------------------------------TRDr~y 43 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRI-----AIVSDTPGV-----------------------------------TRDRIY 43 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCee-----eEeecCCCC-----------------------------------ccCCcc
Confidence 9999999999999999999999987 666555531 223322
Q ss_pred CCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHH
Q 012559 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (461)
Q Consensus 116 g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 195 (461)
+ ... .....+.+|||+|+.... ++.+...+...+...+..+| +||+|+++..+++..|-. +
T Consensus 44 ~------------~~~-~~~~~f~lIDTgGl~~~~----~~~l~~~i~~Qa~~Ai~eAD-vilfvVD~~~Git~~D~~-i 104 (444)
T COG1160 44 G------------DAE-WLGREFILIDTGGLDDGD----EDELQELIREQALIAIEEAD-VILFVVDGREGITPADEE-I 104 (444)
T ss_pred c------------eeE-EcCceEEEEECCCCCcCC----chHHHHHHHHHHHHHHHhCC-EEEEEEeCCCCCCHHHHH-H
Confidence 2 111 122459999999999753 35688889999999999999 577888998888777654 8
Q ss_pred HHHhCCCCCceEEEeccCCccCCCccHHHHHhCcccccCCCeeEEEeCChh---hhcccccHHH
Q 012559 196 AREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQA---DINKNVDMIA 256 (461)
Q Consensus 196 ~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~---~~~~~~~~~~ 256 (461)
|+.+.+.+.|+|+|+||+|..+......++ +.+ |+-...+.|+. ++.++.+...
T Consensus 105 a~~Lr~~~kpviLvvNK~D~~~~e~~~~ef-----ysl--G~g~~~~ISA~Hg~Gi~dLld~v~ 161 (444)
T COG1160 105 AKILRRSKKPVILVVNKIDNLKAEELAYEF-----YSL--GFGEPVPISAEHGRGIGDLLDAVL 161 (444)
T ss_pred HHHHHhcCCCEEEEEEcccCchhhhhHHHH-----Hhc--CCCCceEeehhhccCHHHHHHHHH
Confidence 888887789999999999998443333333 344 44445555554 4444444333
No 13
>PRK09866 hypothetical protein; Provisional
Probab=99.67 E-value=1.4e-14 Score=150.47 Aligned_cols=201 Identities=19% Similarity=0.258 Sum_probs=110.7
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCC-cc-------h---------------hhhcC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGT-DY-------A---------------EFLHA 92 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~-~~-------~---------------~~~~~ 92 (461)
|.++|+|..|+|||||+|+|+|..++|.+...+|..|+.++........ -+ . .++..
T Consensus 70 ~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~lpT~i~~~pg~re~~L~~dtvgfI~~ll~~Lp~~Lv~~f~atl~e 149 (741)
T PRK09866 70 MVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTALPTLIRHTPGQKEPVLHFSHVAPIDCLIQQLQQRLRDCDIKHLTD 149 (741)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCccccCCCcccccccEEEEecCCcCceeeecCCccchHHHHHHhhHHHHHhhhhHHHH
Confidence 9999999999999999999999999999999999999976654321110 00 0 00000
Q ss_pred CCCcccChHHHHHHHHHHh----------------------hhhc---CCCC------cccC-ccEEEEEecCC-----C
Q 012559 93 PRKKFTDFAAVRKEISDET----------------------DRIT---GKSK------QISN-IPIQLSIYSPN-----V 135 (461)
Q Consensus 93 ~~~~~~d~~~v~~~i~~~~----------------------~~~~---g~~~------~~s~-~~i~l~i~~p~-----~ 135 (461)
......|...+-..++... -+++ +..- .|-. ..|.++..-.. .
T Consensus 150 ~~~ad~d~~~L~~~i~~~~~~e~~y~g~~~if~~L~~lndivr~~~~l~~~~p~d~ya~~~~~p~iev~f~hl~g~l~~~ 229 (741)
T PRK09866 150 VLEIDKDMRALMQRIENGVAFEKYYLGAQPIFHCLKSLNDLVRLAKALDVDFPFSAYAAIEHIPVIEVEFVHLAGLESYP 229 (741)
T ss_pred HHhcCccHHHHHHHHhcCcchhhhhhchhhHHHHHhhHHHHHHHHHhhcCCCcHHHHhhhhcCceeeeeeeecccccccc
Confidence 0000012222221111110 0000 0000 0100 11223222222 3
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCC--CceEEEeccC
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTG--ERTFGVLTKL 213 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~--~rti~VltK~ 213 (461)
.+++||||||+.+... ..+ ..++.+.+..+| +||+|++++......+. .+++.+...+ .|+++|+||+
T Consensus 230 ~QIIFVDTPGIhk~~~----~~L----~k~M~eqL~eAD-vVLFVVDat~~~s~~De-eIlk~Lkk~~K~~PVILVVNKI 299 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQ----PHL----QKMLNQQLARAS-AVLAVLDYTQLKSISDE-EVREAILAVGQSVPLYVLVNKF 299 (741)
T ss_pred CCEEEEECCCCCCccc----hHH----HHHHHHHHhhCC-EEEEEEeCCCCCChhHH-HHHHHHHhcCCCCCEEEEEEcc
Confidence 6999999999987421 112 334445799999 67888888765444443 3566666555 4999999999
Q ss_pred CccCCCcc----HHHHHhCcccccCCCeeEEEeCChh
Q 012559 214 DLMDKGTN----ALEVLEGRSYRLQHPWVGIVNRSQA 246 (461)
Q Consensus 214 D~~~~~~~----~~~~l~~~~~~l~~g~~~v~~~s~~ 246 (461)
|..++..+ +.+.+..........|..|++.|+.
T Consensus 300 Dl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAl 336 (741)
T PRK09866 300 DQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSM 336 (741)
T ss_pred cCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCC
Confidence 99854432 2222221101223346667776664
No 14
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.67 E-value=1.3e-15 Score=145.97 Aligned_cols=157 Identities=20% Similarity=0.272 Sum_probs=112.7
Q ss_pred hhhHHHHHHHHHHHHHHhc---cCCCCCCccCCCCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeec
Q 012559 4 MTSLIGLINKIQRACTVLG---DHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQT 80 (461)
Q Consensus 4 ~~~l~~~~~~lq~~~~~~~---~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~ 80 (461)
...+..+++++.+-+.-++ ++-..+|+..+++|+|+|+|.||+|||||+++|++.+. .+
T Consensus 134 ~GR~aSiik~i~~~L~fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Akp-----Ev------------- 195 (346)
T COG1084 134 FGRVASIIKKIDDDLEFLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKP-----EV------------- 195 (346)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCC-----cc-------------
Confidence 3455666677666555554 33346788888999999999999999999999999864 10
Q ss_pred CCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHH
Q 012559 81 EGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVE 160 (461)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~ 160 (461)
....|+.+.|.|.....+...+.+|||||+-+-+ .+-..
T Consensus 196 ------------------------------------A~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRP-----l~ErN 234 (346)
T COG1084 196 ------------------------------------APYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRP-----LEERN 234 (346)
T ss_pred ------------------------------------CCCCccccceeEeeeecCCceEEEecCCcccCCC-----hHHhc
Confidence 1134666667777777777899999999998863 44444
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCC--ccccHHHHHHHHHhCCCC-CceEEEeccCCccCCC
Q 012559 161 DIENMVRSYVEKPSCIILAISPANQ--DIATSDAIKLAREVDPTG-ERTFGVLTKLDLMDKG 219 (461)
Q Consensus 161 ~i~~~v~~yi~~~~~iIL~V~~a~~--d~~~~~~l~l~~~~d~~~-~rti~VltK~D~~~~~ 219 (461)
.|+..+...+++-+.+||++.|++. .++..+-..|.+++.+.- .|++.|+||+|..+.+
T Consensus 235 ~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e 296 (346)
T COG1084 235 EIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEE 296 (346)
T ss_pred HHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchh
Confidence 5666666677766667888887764 344444445667776543 5899999999999654
No 15
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.65 E-value=2.3e-15 Score=152.87 Aligned_cols=181 Identities=18% Similarity=0.176 Sum_probs=105.0
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
+..|++||.||||||||||+|++.+.-......+||.|+.-.
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Gi-------------------------------------- 200 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGV-------------------------------------- 200 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEE--------------------------------------
Confidence 458999999999999999999998631112234566665211
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCC----CccccH
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPAN----QDIATS 190 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~----~d~~~~ 190 (461)
+..++...++|+||||++..+..+ ..+ .....+++.+++. +++|+++. .+.. .
T Consensus 201 ---------------v~~~~~~~i~~vDtPGi~~~a~~~--~~L----g~~~l~~i~radv-lL~VVD~s~~~~~d~~-e 257 (390)
T PRK12298 201 ---------------VRVDDERSFVVADIPGLIEGASEG--AGL----GIRFLKHLERCRV-LLHLIDIAPIDGSDPV-E 257 (390)
T ss_pred ---------------EEeCCCcEEEEEeCCCccccccch--hhH----HHHHHHHHHhCCE-EEEEeccCcccccChH-H
Confidence 122223458999999998743211 112 2223357888885 55555554 1211 2
Q ss_pred HHHHHHHHhCC-----CCCceEEEeccCCccCCCccHHHHHhCc--ccccCCCeeEEEeCChhhhcccccHHHHHHHHHh
Q 012559 191 DAIKLAREVDP-----TGERTFGVLTKLDLMDKGTNALEVLEGR--SYRLQHPWVGIVNRSQADINKNVDMIAARRKERE 263 (461)
Q Consensus 191 ~~l~l~~~~d~-----~~~rti~VltK~D~~~~~~~~~~~l~~~--~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~E~~ 263 (461)
+...+.+++.. ...|.|+|+||+|+..+. ...+.++.. .......++.+...+..++.+.++.+...+.+.+
T Consensus 258 ~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~-el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~~ 336 (390)
T PRK12298 258 NARIIINELEKYSPKLAEKPRWLVFNKIDLLDEE-EAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEENP 336 (390)
T ss_pred HHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChH-HHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhhCc
Confidence 22223343332 358999999999997543 222222210 1111123455555555666667777777777777
Q ss_pred hhccCCCCccchhc
Q 012559 264 YFETSPEYGHLASK 277 (461)
Q Consensus 264 ff~~~~~~~~~~~~ 277 (461)
++++..++++.+.+
T Consensus 337 ~~~~~~~~td~~~~ 350 (390)
T PRK12298 337 REEAEEAEAPEKVE 350 (390)
T ss_pred ccCCcccccCccHH
Confidence 77766666655543
No 16
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.65 E-value=2.1e-14 Score=144.23 Aligned_cols=154 Identities=22% Similarity=0.260 Sum_probs=103.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
+--.||++|.||+|||||||+|+|.+. .+||.-|. +|
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~-----AIVTdI~G------------------------------------TT-- 252 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDR-----AIVTDIAG------------------------------------TT-- 252 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCc-----eEecCCCC------------------------------------Cc--
Confidence 557899999999999999999999987 88887774 11
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
.|.+...+.- +..++.++||.|+... ...+++.--+-+++.++++| +||+|.+++..+...+..
T Consensus 253 ---------RDviee~i~i-~G~pv~l~DTAGiRet-----~d~VE~iGIeRs~~~i~~AD-lvL~v~D~~~~~~~~d~~ 316 (454)
T COG0486 253 ---------RDVIEEDINL-NGIPVRLVDTAGIRET-----DDVVERIGIERAKKAIEEAD-LVLFVLDASQPLDKEDLA 316 (454)
T ss_pred ---------cceEEEEEEE-CCEEEEEEecCCcccC-----ccHHHHHHHHHHHHHHHhCC-EEEEEEeCCCCCchhhHH
Confidence 1112111111 2378999999999864 23344443456788899999 688889998765555543
Q ss_pred HHHHHhCCCCCceEEEeccCCccCCCccHHHHHhCcccccCCCeeEEEeCChhhhccccc
Q 012559 194 KLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVD 253 (461)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (461)
+.. ..+.+.++++|+||.|+..+... ... ....+..+..+....+.+++....
T Consensus 317 -~~~-~~~~~~~~i~v~NK~DL~~~~~~-~~~----~~~~~~~~i~iSa~t~~Gl~~L~~ 369 (454)
T COG0486 317 -LIE-LLPKKKPIIVVLNKADLVSKIEL-ESE----KLANGDAIISISAKTGEGLDALRE 369 (454)
T ss_pred -HHH-hcccCCCEEEEEechhccccccc-chh----hccCCCceEEEEecCccCHHHHHH
Confidence 333 55668999999999999976531 111 223334566666666655544333
No 17
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.59 E-value=2.9e-14 Score=143.23 Aligned_cols=126 Identities=22% Similarity=0.329 Sum_probs=84.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
..|+|++||.+|+|||||+|+|+|.++...+...+|+-|+.-
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~-------------------------------------- 229 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTR-------------------------------------- 229 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEE--------------------------------------
Confidence 579999999999999999999999876433333445444311
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH--
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD-- 191 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~-- 191 (461)
.+.-++..++.|+||||+.+.. |.+..+.++. +..++.++|. +++|+|++.......
T Consensus 230 ---------------~i~~~~~~~i~l~DT~G~~~~l----~~~lie~f~~-tle~~~~ADl-il~VvD~s~~~~~~~~~ 288 (351)
T TIGR03156 230 ---------------RLDLPDGGEVLLTDTVGFIRDL----PHELVAAFRA-TLEEVREADL-LLHVVDASDPDREEQIE 288 (351)
T ss_pred ---------------EEEeCCCceEEEEecCcccccC----CHHHHHHHHH-HHHHHHhCCE-EEEEEECCCCchHHHHH
Confidence 1223334678999999996532 4455554544 4567889995 666666654332222
Q ss_pred -HHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 192 -AIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 192 -~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
+..+++++...+.|+++|+||+|+.+.
T Consensus 289 ~~~~~L~~l~~~~~piIlV~NK~Dl~~~ 316 (351)
T TIGR03156 289 AVEKVLEELGAEDIPQLLVYNKIDLLDE 316 (351)
T ss_pred HHHHHHHHhccCCCCEEEEEEeecCCCh
Confidence 234566665557899999999999753
No 18
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.58 E-value=2.3e-14 Score=129.30 Aligned_cols=126 Identities=26% Similarity=0.372 Sum_probs=91.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCc--cccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI--VTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDET 111 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~--~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~ 111 (461)
++|.||++|..|+|||||||+|+|.+-|.|-+.. .|+.+.
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iN-------------------------------------- 64 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLIN-------------------------------------- 64 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeE--------------------------------------
Confidence 7899999999999999999999997644333221 111111
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCC-C-eEEEEEecCCCcccc
Q 012559 112 DRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKP-S-CIILAISPANQDIAT 189 (461)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~-~-~iIL~V~~a~~d~~~ 189 (461)
.+..+ ..+.|||+||+.-... |.+..+.+..++..|++.- + ..+++++|+......
T Consensus 65 ------------------ff~~~-~~~~lVDlPGYGyAkv---~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~ 122 (200)
T COG0218 65 ------------------FFEVD-DELRLVDLPGYGYAKV---PKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKD 122 (200)
T ss_pred ------------------EEEec-CcEEEEeCCCcccccC---CHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcH
Confidence 11111 2388999999976543 4677788999999999864 3 234456788777666
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCCccCCCc
Q 012559 190 SDAIKLAREVDPTGERTFGVLTKLDLMDKGT 220 (461)
Q Consensus 190 ~~~l~l~~~~d~~~~rti~VltK~D~~~~~~ 220 (461)
.|. ++...+...+.++++|+||+|.+.++.
T Consensus 123 ~D~-em~~~l~~~~i~~~vv~tK~DKi~~~~ 152 (200)
T COG0218 123 LDR-EMIEFLLELGIPVIVVLTKADKLKKSE 152 (200)
T ss_pred HHH-HHHHHHHHcCCCeEEEEEccccCChhH
Confidence 554 477777888999999999999998763
No 19
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.55 E-value=4.8e-14 Score=130.56 Aligned_cols=125 Identities=21% Similarity=0.347 Sum_probs=77.4
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCC--ccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG--IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~--~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
+|++||.+|+|||||+|+|+|.+.+.++.. .+|+.+....
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~-------------------------------------- 43 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKES-------------------------------------- 43 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceee--------------------------------------
Confidence 699999999999999999999987655532 2343322000
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHH--
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA-- 192 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~-- 192 (461)
..+ +...+++|||||+.+... ...+....+...+......++ +||+|+++.. +...+.
T Consensus 44 -------------~~~---~~~~i~viDTPG~~d~~~--~~~~~~~~i~~~~~~~~~g~~-~illVi~~~~-~t~~d~~~ 103 (196)
T cd01852 44 -------------AVW---DGRRVNVIDTPGLFDTSV--SPEQLSKEIVRCLSLSAPGPH-AFLLVVPLGR-FTEEEEQA 103 (196)
T ss_pred -------------EEE---CCeEEEEEECcCCCCccC--ChHHHHHHHHHHHHhcCCCCE-EEEEEEECCC-cCHHHHHH
Confidence 001 235789999999998532 123334334444444455677 5667777765 444332
Q ss_pred HHHHHHh-CC-CCCceEEEeccCCccCCC
Q 012559 193 IKLAREV-DP-TGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 193 l~l~~~~-d~-~~~rti~VltK~D~~~~~ 219 (461)
++.++++ .+ .-.++|+|+|+.|.+...
T Consensus 104 l~~l~~~fg~~~~~~~ivv~T~~d~l~~~ 132 (196)
T cd01852 104 VETLQELFGEKVLDHTIVLFTRGDDLEGG 132 (196)
T ss_pred HHHHHHHhChHhHhcEEEEEECccccCCC
Confidence 3333332 11 126899999999998654
No 20
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.54 E-value=9.3e-14 Score=138.49 Aligned_cols=126 Identities=21% Similarity=0.279 Sum_probs=77.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
-++.|++||.||||||||||+|++.+.-......+|+.|..-.
T Consensus 157 ~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~------------------------------------- 199 (335)
T PRK12299 157 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGV------------------------------------- 199 (335)
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEE-------------------------------------
Confidence 4688999999999999999999987531111123566664211
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
+..++...++++||||++..+.. ...+.....++++++++ +++|+|++..-..++..
T Consensus 200 ----------------v~~~~~~~~~i~D~PGli~ga~~------~~gLg~~flrhie~a~v-lI~ViD~s~~~s~e~~~ 256 (335)
T PRK12299 200 ----------------VRVDDYKSFVIADIPGLIEGASE------GAGLGHRFLKHIERTRL-LLHLVDIEAVDPVEDYK 256 (335)
T ss_pred ----------------EEeCCCcEEEEEeCCCccCCCCc------cccHHHHHHHHhhhcCE-EEEEEcCCCCCCHHHHH
Confidence 11223456899999999874321 11223345567778885 55666665321222222
Q ss_pred HHHHH---hCC--CCCceEEEeccCCccCCC
Q 012559 194 KLARE---VDP--TGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 194 ~l~~~---~d~--~~~rti~VltK~D~~~~~ 219 (461)
.+..+ +++ ...+.++|+||+|+.+..
T Consensus 257 ~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~ 287 (335)
T PRK12299 257 TIRNELEKYSPELADKPRILVLNKIDLLDEE 287 (335)
T ss_pred HHHHHHHHhhhhcccCCeEEEEECcccCCch
Confidence 23333 333 367999999999997543
No 21
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.53 E-value=1.1e-12 Score=135.51 Aligned_cols=158 Identities=18% Similarity=0.181 Sum_probs=90.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
+-.+|+++|.+|+|||||+|+|+|.++ .+++..|.
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~-----aivs~~pg---------------------------------------- 236 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDR-----AIVSDIKG---------------------------------------- 236 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCC-----cccCCCCC----------------------------------------
Confidence 557999999999999999999999764 22332221
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
.+ .+.+...+.. +..++.++||||+.... ..++..--.....|++++|+ +++|.+++...+..+.
T Consensus 237 ---tT----rd~~~~~i~~-~g~~v~l~DTaG~~~~~-----~~ie~~gi~~~~~~~~~aD~-il~V~D~s~~~s~~~~- 301 (442)
T TIGR00450 237 ---TT----RDVVEGDFEL-NGILIKLLDTAGIREHA-----DFVERLGIEKSFKAIKQADL-VIYVLDASQPLTKDDF- 301 (442)
T ss_pred ---cE----EEEEEEEEEE-CCEEEEEeeCCCcccch-----hHHHHHHHHHHHHHHhhCCE-EEEEEECCCCCChhHH-
Confidence 00 0011111111 22467899999987531 12222212456789999995 5566666554433332
Q ss_pred HHHHHhCCCCCceEEEeccCCccCCCccHHHHHhCcccccCCCeeEEEeCChhhhcccccHHHHHH
Q 012559 194 KLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARR 259 (461)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (461)
+...+...+.|+|+|+||+|+... +...+.+ .+...++.+...+ .+++++++.+....
T Consensus 302 -~l~~~~~~~~piIlV~NK~Dl~~~--~~~~~~~----~~~~~~~~vSak~-~gI~~~~~~L~~~i 359 (442)
T TIGR00450 302 -LIIDLNKSKKPFILVLNKIDLKIN--SLEFFVS----SKVLNSSNLSAKQ-LKIKALVDLLTQKI 359 (442)
T ss_pred -HHHHHhhCCCCEEEEEECccCCCc--chhhhhh----hcCCceEEEEEec-CCHHHHHHHHHHHH
Confidence 445555457899999999999644 2212111 2223455555444 34445555444433
No 22
>PRK11058 GTPase HflX; Provisional
Probab=99.53 E-value=2.9e-13 Score=139.12 Aligned_cols=126 Identities=20% Similarity=0.310 Sum_probs=82.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
.+|.|++||.+|||||||+|+|+|.++...+.-.+|+-|+.-
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~-------------------------------------- 237 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLR-------------------------------------- 237 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceE--------------------------------------
Confidence 579999999999999999999999876422222344433310
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH--
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD-- 191 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~-- 191 (461)
.+..++...+.|+||||+++.. |.+..+.+.. +..++.++|. +++|+|++.......
T Consensus 238 ---------------~i~l~~~~~~~l~DTaG~~r~l----p~~lve~f~~-tl~~~~~ADl-IL~VvDaS~~~~~e~l~ 296 (426)
T PRK11058 238 ---------------RIDVADVGETVLADTVGFIRHL----PHDLVAAFKA-TLQETRQATL-LLHVVDAADVRVQENIE 296 (426)
T ss_pred ---------------EEEeCCCCeEEEEecCcccccC----CHHHHHHHHH-HHHHhhcCCE-EEEEEeCCCccHHHHHH
Confidence 1222233367899999996531 4454444444 4567788885 566666654322222
Q ss_pred -HHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 192 -AIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 192 -~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
+..++.++...+.|+++|+||+|+.+.
T Consensus 297 ~v~~iL~el~~~~~pvIiV~NKiDL~~~ 324 (426)
T PRK11058 297 AVNTVLEEIDAHEIPTLLVMNKIDMLDD 324 (426)
T ss_pred HHHHHHHHhccCCCCEEEEEEcccCCCc
Confidence 234566666667899999999999743
No 23
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.53 E-value=1.7e-12 Score=134.88 Aligned_cols=155 Identities=23% Similarity=0.251 Sum_probs=91.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
+-+.|+++|.+|+|||||+|+|+|.++ .+++..|.
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~-----a~v~~~~g---------------------------------------- 248 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEER-----AIVTDIAG---------------------------------------- 248 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCC-----cccCCCCC----------------------------------------
Confidence 447899999999999999999999865 22222221
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHH-HHHHHHHHhcCCCeEEEEEecCCCccccHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVED-IENMVRSYVEKPSCIILAISPANQDIATSDA 192 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~-i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~ 192 (461)
. +.+.+...+.. +..++.++||||+... .+..+. --..+..++.++|. +++|+|++......+
T Consensus 249 ---t----T~d~~~~~i~~-~g~~i~l~DT~G~~~~------~~~ie~~gi~~~~~~~~~aD~-il~VvD~s~~~s~~~- 312 (449)
T PRK05291 249 ---T----TRDVIEEHINL-DGIPLRLIDTAGIRET------DDEVEKIGIERSREAIEEADL-VLLVLDASEPLTEED- 312 (449)
T ss_pred ---c----ccccEEEEEEE-CCeEEEEEeCCCCCCC------ccHHHHHHHHHHHHHHHhCCE-EEEEecCCCCCChhH-
Confidence 0 00111111111 2356899999998642 222221 12335678999995 666667665443333
Q ss_pred HHHHHHhCCCCCceEEEeccCCccCCCccHHHHHhCcccccCCCeeEEEeCChhhhcccccHHHHHH
Q 012559 193 IKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARR 259 (461)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (461)
..+... ..+.|+++|+||+|+.+.... . ......++.+...++.++++....+....
T Consensus 313 ~~~l~~--~~~~piiiV~NK~DL~~~~~~-~-------~~~~~~~i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 313 DEILEE--LKDKPVIVVLNKADLTGEIDL-E-------EENGKPVIRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred HHHHHh--cCCCCcEEEEEhhhccccchh-h-------hccCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence 233443 346899999999999754321 1 11223466677766666666555554443
No 24
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.52 E-value=3.7e-14 Score=148.07 Aligned_cols=154 Identities=20% Similarity=0.298 Sum_probs=102.0
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 115 (461)
.+|+++|.||+|||||+|+|+|.+. .+ .||.+++ .++..
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q------~V-----------------------------gNwpGvT------VEkke 42 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQ------KV-----------------------------GNWPGVT------VEKKE 42 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCc------ee-----------------------------cCCCCee------EEEEE
Confidence 5699999999999999999999864 11 1222221 11112
Q ss_pred CCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcC--CCeEEEEEecCCCccccHHHH
Q 012559 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEK--PSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 116 g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~--~~~iIL~V~~a~~d~~~~~~l 193 (461)
| ........+++|||||+++... .+.+ +..+++|+.+ +| +|+.|+||. .....+
T Consensus 43 g-------------~~~~~~~~i~ivDLPG~YSL~~----~S~D---E~Var~~ll~~~~D-~ivnVvDAt---nLeRnL 98 (653)
T COG0370 43 G-------------KLKYKGHEIEIVDLPGTYSLTA----YSED---EKVARDFLLEGKPD-LIVNVVDAT---NLERNL 98 (653)
T ss_pred E-------------EEEecCceEEEEeCCCcCCCCC----CCch---HHHHHHHHhcCCCC-EEEEEcccc---hHHHHH
Confidence 2 2222335689999999999853 3333 6778899974 55 677777776 356677
Q ss_pred HHHHHhCCCCCceEEEeccCCccCCCccHHHHHhCcccccCCCeeEEEeCChhhhcccccHH
Q 012559 194 KLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMI 255 (461)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (461)
.+.-++-+.|.|+|+++|++|...+...-.|.-+ .+..++.+-+.++....+++++.++..
T Consensus 99 yltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~-L~~~LGvPVv~tvA~~g~G~~~l~~~i 159 (653)
T COG0370 99 YLTLQLLELGIPMILALNMIDEAKKRGIRIDIEK-LSKLLGVPVVPTVAKRGEGLEELKRAI 159 (653)
T ss_pred HHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHH-HHHHhCCCEEEEEeecCCCHHHHHHHH
Confidence 7777888889999999999999876542222211 134566666677777666655544433
No 25
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.52 E-value=2e-13 Score=121.26 Aligned_cols=124 Identities=23% Similarity=0.344 Sum_probs=77.9
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCc-cccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI-VTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~-~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
-.+|+++|.+|||||||+|+|+|.++.+.+... +|+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~---------------------------------------- 42 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRI---------------------------------------- 42 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceE----------------------------------------
Confidence 478999999999999999999998753222111 111100
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
. .+.......+.++||||+.... ......+......++...|. +++|+++........ .
T Consensus 43 -~-------------~~~~~~~~~~~liDtpG~~~~~-----~~~~~~~~~~~~~~~~~~d~-i~~v~d~~~~~~~~~-~ 101 (168)
T cd04163 43 -R-------------GIYTDDDAQIIFVDTPGIHKPK-----KKLGERMVKAAWSALKDVDL-VLFVVDASEPIGEGD-E 101 (168)
T ss_pred -E-------------EEEEcCCeEEEEEECCCCCcch-----HHHHHHHHHHHHHHHHhCCE-EEEEEECCCccCchH-H
Confidence 0 0222223678999999987642 11223345567788889995 445555554433322 2
Q ss_pred HHHHHhCCCCCceEEEeccCCccCCC
Q 012559 194 KLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
.+.+.+...+.+.++|+||+|+....
T Consensus 102 ~~~~~~~~~~~~~iiv~nK~Dl~~~~ 127 (168)
T cd04163 102 FILELLKKSKTPVILVLNKIDLVKDK 127 (168)
T ss_pred HHHHHHHHhCCCEEEEEEchhccccH
Confidence 34555555578999999999998433
No 26
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.52 E-value=6.2e-14 Score=140.44 Aligned_cols=157 Identities=20% Similarity=0.290 Sum_probs=106.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
+..+|++||.||+|||||+|+|+|.+-. ++...|
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~-----Iv~~~a----------------------------------------- 210 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERV-----IVSDIA----------------------------------------- 210 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceE-----EecCCC-----------------------------------------
Confidence 5789999999999999999999998652 222111
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
| -+.+.|...+. .+...+.||||.|+.+...-. +..+..-..-+...+..+| ++++|++|..++..++..
T Consensus 211 --G----TTRD~I~~~~e-~~~~~~~liDTAGiRrk~ki~--e~~E~~Sv~rt~~aI~~a~-vvllviDa~~~~~~qD~~ 280 (444)
T COG1160 211 --G----TTRDSIDIEFE-RDGRKYVLIDTAGIRRKGKIT--ESVEKYSVARTLKAIERAD-VVLLVIDATEGISEQDLR 280 (444)
T ss_pred --C----ccccceeeeEE-ECCeEEEEEECCCCCcccccc--cceEEEeehhhHhHHhhcC-EEEEEEECCCCchHHHHH
Confidence 1 22233333333 344778999999998865331 1111111223557778888 788899999999888875
Q ss_pred HHHHHhCCCCCceEEEeccCCccCCCccHHHHHhCc--ccccCCCeeEEEeCChhh
Q 012559 194 KLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGR--SYRLQHPWVGIVNRSQAD 247 (461)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~--~~~l~~g~~~v~~~s~~~ 247 (461)
++..+...|...++|+||+|++++.+...+..+.+ ..-..++|..++..|+..
T Consensus 281 -ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~ 335 (444)
T COG1160 281 -IAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALT 335 (444)
T ss_pred -HHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecC
Confidence 88888888999999999999998643222222110 233346888888888764
No 27
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.51 E-value=5e-13 Score=124.38 Aligned_cols=127 Identities=24% Similarity=0.351 Sum_probs=78.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
..|.|+|+|.+|||||||+|+|++..+.+.+....|..|..
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~--------------------------------------- 80 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTT--------------------------------------- 80 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhccCCccceecccee---------------------------------------
Confidence 57999999999999999999999987533332222222210
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccH---
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--- 190 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~--- 190 (461)
..+..++...++||||||+.+.. +......+... ..++.++|. +++|.+++......
T Consensus 81 --------------~~~~~~~~~~~~i~Dt~G~~~~~----~~~~~~~~~~~-~~~~~~~d~-ii~v~D~~~~~~~~~~~ 140 (204)
T cd01878 81 --------------RRLRLPDGREVLLTDTVGFIRDL----PHQLVEAFRST-LEEVAEADL-LLHVVDASDPDYEEQIE 140 (204)
T ss_pred --------------EEEEecCCceEEEeCCCccccCC----CHHHHHHHHHH-HHHHhcCCe-EEEEEECCCCChhhHHH
Confidence 01222233478999999986532 22232333333 345667885 55555665433322
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 191 DAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
.+..+.+.+...+.+.++|+||+|+....
T Consensus 141 ~~~~~l~~~~~~~~~viiV~NK~Dl~~~~ 169 (204)
T cd01878 141 TVEKVLKELGAEDIPMILVLNKIDLLDDE 169 (204)
T ss_pred HHHHHHHHcCcCCCCEEEEEEccccCChH
Confidence 23345566655568999999999997543
No 28
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.49 E-value=4.5e-13 Score=120.25 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=23.5
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDF 60 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~ 60 (461)
|.|+++|.+|+|||||+|+|++..+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~ 25 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP 25 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC
Confidence 7899999999999999999999865
No 29
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.49 E-value=1.7e-13 Score=115.66 Aligned_cols=115 Identities=23% Similarity=0.321 Sum_probs=73.0
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCC-ccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhc
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 115 (461)
+|+|+|.+|+|||||+|+|+|.+..+.+.. .+|+.+.. .
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~-~--------------------------------------- 40 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVY-G--------------------------------------- 40 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEE-E---------------------------------------
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeee-e---------------------------------------
Confidence 689999999999999999999765443332 35555421 0
Q ss_pred CCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHH
Q 012559 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (461)
Q Consensus 116 g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 195 (461)
...-+...+.|+||||+..... .+........+.+.+...|. +++|++++... .....++
T Consensus 41 --------------~~~~~~~~~~~vDtpG~~~~~~----~~~~~~~~~~~~~~~~~~d~-ii~vv~~~~~~-~~~~~~~ 100 (116)
T PF01926_consen 41 --------------QFEYNNKKFILVDTPGINDGES----QDNDGKEIRKFLEQISKSDL-IIYVVDASNPI-TEDDKNI 100 (116)
T ss_dssp --------------EEEETTEEEEEEESSSCSSSSH----HHHHHHHHHHHHHHHCTESE-EEEEEETTSHS-HHHHHHH
T ss_pred --------------eeeeceeeEEEEeCCCCcccch----hhHHHHHHHHHHHHHHHCCE-EEEEEECCCCC-CHHHHHH
Confidence 0011234568999999987421 11111123345556688885 55555666532 3344457
Q ss_pred HHHhCCCCCceEEEecc
Q 012559 196 AREVDPTGERTFGVLTK 212 (461)
Q Consensus 196 ~~~~d~~~~rti~VltK 212 (461)
++++. .+.++++|+||
T Consensus 101 ~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 101 LRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHHHH-TTSEEEEEEES
T ss_pred HHHHh-cCCCEEEEEcC
Confidence 77776 78999999998
No 30
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.48 E-value=5.9e-13 Score=121.36 Aligned_cols=124 Identities=24% Similarity=0.323 Sum_probs=81.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCc--cccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI--VTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDET 111 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~--~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~ 111 (461)
+.|.|+++|.+|+|||||+|+|+|..+.+.-+.. +|+.+
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~--------------------------------------- 57 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLI--------------------------------------- 57 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEE---------------------------------------
Confidence 6799999999999999999999998642221110 11100
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCC--eEEEEEecCCCcccc
Q 012559 112 DRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPS--CIILAISPANQDIAT 189 (461)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~--~iIL~V~~a~~d~~~ 189 (461)
....+ + .++.+|||||+..... +......+..+...|++..+ ..+++|++++.++..
T Consensus 58 --------------~~~~~--~--~~~~liDtpG~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~ 116 (179)
T TIGR03598 58 --------------NFFEV--N--DGFRLVDLPGYGYAKV---SKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKE 116 (179)
T ss_pred --------------EEEEe--C--CcEEEEeCCCCccccC---ChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCH
Confidence 00111 1 3689999999865421 23334556677778887542 246667777766655
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 190 SDAIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 190 ~~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
.+. .+.+.+...+.|+++|+||+|+++.
T Consensus 117 ~~~-~~~~~~~~~~~pviiv~nK~D~~~~ 144 (179)
T TIGR03598 117 LDL-EMLEWLRERGIPVLIVLTKADKLKK 144 (179)
T ss_pred HHH-HHHHHHHHcCCCEEEEEECcccCCH
Confidence 544 3556666678999999999999854
No 31
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.48 E-value=3.2e-13 Score=121.05 Aligned_cols=117 Identities=18% Similarity=0.270 Sum_probs=71.8
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 115 (461)
|.|+|+|.+|+|||||+|+|++..+.......+|+...
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~------------------------------------------ 38 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIG------------------------------------------ 38 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeec------------------------------------------
Confidence 78999999999999999999988762221111111100
Q ss_pred CCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHH
Q 012559 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (461)
Q Consensus 116 g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 195 (461)
...+....+...++++|||||.... ..+...++..+|+ +++|++++.... ......
T Consensus 39 ---------~~~~~~~~~~~~~~~iiDtpG~~~~-------------~~~~~~~~~~~d~-il~v~d~~~~~~-~~~~~~ 94 (168)
T cd01887 39 ---------AFEVPAEVLKIPGITFIDTPGHEAF-------------TNMRARGASLTDI-AILVVAADDGVM-PQTIEA 94 (168)
T ss_pred ---------cEEEecccCCcceEEEEeCCCcHHH-------------HHHHHHHHhhcCE-EEEEEECCCCcc-HHHHHH
Confidence 0000111023478999999996432 4455667788885 555556554322 222223
Q ss_pred HHHhCCCCCceEEEeccCCccCC
Q 012559 196 AREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 196 ~~~~d~~~~rti~VltK~D~~~~ 218 (461)
+..+...+.|.++|+||+|+.+.
T Consensus 95 ~~~~~~~~~p~ivv~NK~Dl~~~ 117 (168)
T cd01887 95 IKLAKAANVPFIVALNKIDKPNA 117 (168)
T ss_pred HHHHHHcCCCEEEEEEceecccc
Confidence 33333457899999999998743
No 32
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.47 E-value=3.8e-13 Score=139.28 Aligned_cols=162 Identities=18% Similarity=0.181 Sum_probs=87.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
-+..|++||.+|||||||||+|++.+.-......+|+.|..
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~l--------------------------------------- 198 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNL--------------------------------------- 198 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceE---------------------------------------
Confidence 46889999999999999999999975311111234555431
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCC-----c-c
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-----D-I 187 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~-----d-~ 187 (461)
| +.......++|+||||++..+. ....+.....+++.+++. |++|+|+.. + +
T Consensus 199 --G-------------vv~~~~~~f~laDtPGliegas------~g~gLg~~fLrhieradv-Lv~VVD~s~~e~~rdp~ 256 (500)
T PRK12296 199 --G-------------VVQAGDTRFTVADVPGLIPGAS------EGKGLGLDFLRHIERCAV-LVHVVDCATLEPGRDPL 256 (500)
T ss_pred --E-------------EEEECCeEEEEEECCCCccccc------hhhHHHHHHHHHHHhcCE-EEEEECCcccccccCch
Confidence 1 1111225689999999986431 111222334567788885 555666642 1 1
Q ss_pred ccHH-HHHHHHHhC-----------CCCCceEEEeccCCccCCCccHHHHHhCcccccCCCeeEEEeCChhhhcccccHH
Q 012559 188 ATSD-AIKLAREVD-----------PTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMI 255 (461)
Q Consensus 188 ~~~~-~l~l~~~~d-----------~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (461)
..-+ ...-+..+. ..+.|.|+|+||+|+.+.. +..+.+..........++.+...+..++++.+..+
T Consensus 257 ~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~-el~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L 335 (500)
T PRK12296 257 SDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR-ELAEFVRPELEARGWPVFEVSAASREGLRELSFAL 335 (500)
T ss_pred hhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhH-HHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 1111 111112222 2468999999999997433 22222221111112334455555555555444444
Q ss_pred HH
Q 012559 256 AA 257 (461)
Q Consensus 256 ~~ 257 (461)
..
T Consensus 336 ~e 337 (500)
T PRK12296 336 AE 337 (500)
T ss_pred HH
Confidence 33
No 33
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.47 E-value=5.2e-13 Score=123.14 Aligned_cols=125 Identities=23% Similarity=0.343 Sum_probs=79.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCc--cccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI--VTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDET 111 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~--~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~ 111 (461)
.+|.|+++|.+|+|||||+|+|+|.++.+..+.. +|+.+
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~--------------------------------------- 63 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLI--------------------------------------- 63 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEE---------------------------------------
Confidence 7899999999999999999999997653322111 11111
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCe--EEEEEecCCCcccc
Q 012559 112 DRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSC--IILAISPANQDIAT 189 (461)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~--iIL~V~~a~~d~~~ 189 (461)
..... ..++.||||||+.... .+....+....+...|+...+. ++++|+++......
T Consensus 64 -----------------~~~~~-~~~l~l~DtpG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~ 122 (196)
T PRK00454 64 -----------------NFFEV-NDKLRLVDLPGYGYAK---VSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKE 122 (196)
T ss_pred -----------------EEEec-CCeEEEeCCCCCCCcC---CCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCH
Confidence 01111 2679999999976532 1334445567778888886542 34555565544333
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 190 SDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 190 ~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
.+ ..+.+.+...+.++++|+||+|+.+.+
T Consensus 123 ~~-~~i~~~l~~~~~~~iiv~nK~Dl~~~~ 151 (196)
T PRK00454 123 LD-LQMIEWLKEYGIPVLIVLTKADKLKKG 151 (196)
T ss_pred HH-HHHHHHHHHcCCcEEEEEECcccCCHH
Confidence 22 223444455578899999999998654
No 34
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.46 E-value=3.6e-13 Score=121.00 Aligned_cols=123 Identities=22% Similarity=0.279 Sum_probs=68.6
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhcC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 116 (461)
.|++||.+|||||||+|+|+|....+......|+.|. .|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~-----------------------------------------~~ 40 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPN-----------------------------------------LG 40 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCc-----------------------------------------ce
Confidence 4899999999999999999987541111111222221 01
Q ss_pred CCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCc-cccHH---H
Q 012559 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IATSD---A 192 (461)
Q Consensus 117 ~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d-~~~~~---~ 192 (461)
. +...+...+.|+||||+...... ...+ .....+++..+|+ +++|.++... -..+. +
T Consensus 41 ----------~--~~~~~~~~~~l~DtpG~~~~~~~--~~~~----~~~~~~~~~~~d~-vi~v~D~~~~~~~~~~~~~~ 101 (170)
T cd01898 41 ----------V--VRVDDGRSFVVADIPGLIEGASE--GKGL----GHRFLRHIERTRL-LLHVIDLSGDDDPVEDYKTI 101 (170)
T ss_pred ----------E--EEcCCCCeEEEEecCcccCcccc--cCCc----hHHHHHHHHhCCE-EEEEEecCCCCCHHHHHHHH
Confidence 0 11112247899999998653211 1111 2223344566885 4555555533 11122 2
Q ss_pred HHHHHHhCC--CCCceEEEeccCCccCCC
Q 012559 193 IKLAREVDP--TGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 193 l~l~~~~d~--~~~rti~VltK~D~~~~~ 219 (461)
.+.+....+ .+.|.++|+||+|+.++.
T Consensus 102 ~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~ 130 (170)
T cd01898 102 RNELELYNPELLEKPRIVVLNKIDLLDEE 130 (170)
T ss_pred HHHHHHhCccccccccEEEEEchhcCCch
Confidence 222333332 368899999999997654
No 35
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.45 E-value=8.4e-13 Score=137.03 Aligned_cols=126 Identities=20% Similarity=0.278 Sum_probs=81.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCC-ccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~ 112 (461)
...+|+++|.+|+|||||+|+|+|.+..+.+.. .+|+.+.
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~--------------------------------------- 211 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSI--------------------------------------- 211 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcE---------------------------------------
Confidence 457899999999999999999999864322211 1222221
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHH
Q 012559 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (461)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~ 192 (461)
...+.. +...+++|||||+.+.... ....+......+.+++..+|+ +++|.++....+.++.
T Consensus 212 --------------~~~~~~-~~~~~~liDT~G~~~~~~~--~~~~e~~~~~~~~~~~~~ad~-~ilV~D~~~~~~~~~~ 273 (429)
T TIGR03594 212 --------------DIPFER-NGKKYLLIDTAGIRRKGKV--TEGVEKYSVLRTLKAIERADV-VLLVLDATEGITEQDL 273 (429)
T ss_pred --------------eEEEEE-CCcEEEEEECCCccccccc--hhhHHHHHHHHHHHHHHhCCE-EEEEEECCCCccHHHH
Confidence 111111 2246899999999775321 112222222345678899995 5566677666665554
Q ss_pred HHHHHHhCCCCCceEEEeccCCccC
Q 012559 193 IKLAREVDPTGERTFGVLTKLDLMD 217 (461)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~ 217 (461)
++++.+...+.+.|+|+||+|+.+
T Consensus 274 -~~~~~~~~~~~~iiiv~NK~Dl~~ 297 (429)
T TIGR03594 274 -RIAGLILEAGKALVIVVNKWDLVK 297 (429)
T ss_pred -HHHHHHHHcCCcEEEEEECcccCC
Confidence 466666667899999999999983
No 36
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.44 E-value=8.5e-13 Score=131.49 Aligned_cols=125 Identities=21% Similarity=0.252 Sum_probs=75.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
-++.|++||.+|||||||||+|++...-......+|+.|+.-.
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~------------------------------------- 198 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGV------------------------------------- 198 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEE-------------------------------------
Confidence 3588999999999999999999987531111223555554211
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCc-c--ccH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-I--ATS 190 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d-~--~~~ 190 (461)
+...+...++|+||||+...+.. ...+.....+++.+++. +++|+|+... . ..+
T Consensus 199 ----------------v~~~~~~~~~i~D~PGli~~a~~------~~gLg~~flrhierad~-ll~VvD~s~~~~~~~~e 255 (329)
T TIGR02729 199 ----------------VRVDDGRSFVIADIPGLIEGASE------GAGLGHRFLKHIERTRV-LLHLIDISPLDGRDPIE 255 (329)
T ss_pred ----------------EEeCCceEEEEEeCCCcccCCcc------cccHHHHHHHHHHhhCE-EEEEEcCccccccCHHH
Confidence 11122356899999999864321 11123345566777884 5556666532 1 111
Q ss_pred HHHHHHH---HhCC--CCCceEEEeccCCccCC
Q 012559 191 DAIKLAR---EVDP--TGERTFGVLTKLDLMDK 218 (461)
Q Consensus 191 ~~l~l~~---~~d~--~~~rti~VltK~D~~~~ 218 (461)
+...+.+ .+.+ ...|.++|+||+|+.+.
T Consensus 256 ~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~ 288 (329)
T TIGR02729 256 DYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE 288 (329)
T ss_pred HHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh
Confidence 2222222 3332 36899999999999754
No 37
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.44 E-value=1.3e-12 Score=136.85 Aligned_cols=160 Identities=19% Similarity=0.242 Sum_probs=97.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
..|.|+|||.+|+|||||+|+|+|..+. .+...|.
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~-----~v~~~~g---------------------------------------- 71 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREA-----VVEDVPG---------------------------------------- 71 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcc-----cccCCCC----------------------------------------
Confidence 5799999999999999999999997641 1111111
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
++.+.+...+.. +...+.||||||+... ...+...+...+..|+..+|. +|+|+++.......+ .
T Consensus 72 -------vT~d~~~~~~~~-~~~~~~l~DT~G~~~~-----~~~~~~~~~~~~~~~~~~aD~-il~VvD~~~~~s~~~-~ 136 (472)
T PRK03003 72 -------VTRDRVSYDAEW-NGRRFTVVDTGGWEPD-----AKGLQASVAEQAEVAMRTADA-VLFVVDATVGATATD-E 136 (472)
T ss_pred -------CCEeeEEEEEEE-CCcEEEEEeCCCcCCc-----chhHHHHHHHHHHHHHHhCCE-EEEEEECCCCCCHHH-H
Confidence 111111111111 2246889999998642 234556677888899999995 666666665544333 3
Q ss_pred HHHHHhCCCCCceEEEeccCCccCCCccHHHHHhCcccccCCC-eeEEEeCChhhhcccccHHHHH
Q 012559 194 KLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHP-WVGIVNRSQADINKNVDMIAAR 258 (461)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g-~~~v~~~s~~~~~~~~~~~~~~ 258 (461)
.++..+...+.|+|+|+||+|+.....+..+. +.++++ .+.+....+.++++.++.+...
T Consensus 137 ~i~~~l~~~~~piilV~NK~Dl~~~~~~~~~~-----~~~g~~~~~~iSA~~g~gi~eL~~~i~~~ 197 (472)
T PRK03003 137 AVARVLRRSGKPVILAANKVDDERGEADAAAL-----WSLGLGEPHPVSALHGRGVGDLLDAVLAA 197 (472)
T ss_pred HHHHHHHHcCCCEEEEEECccCCccchhhHHH-----HhcCCCCeEEEEcCCCCCcHHHHHHHHhh
Confidence 35555556689999999999986433222222 122222 2345555555555555444433
No 38
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.43 E-value=2.4e-12 Score=115.33 Aligned_cols=126 Identities=21% Similarity=0.309 Sum_probs=76.5
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCc-cccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI-VTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~-~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
.++|+++|.+++|||||+|+|+|..+.+.+... +|+...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~---------------------------------------- 41 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSI---------------------------------------- 41 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCce----------------------------------------
Confidence 578999999999999999999998653322211 111110
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
...+.. +..++++|||||+...... ....+.........++..+|. +++|.+++...... ..
T Consensus 42 -----------~~~~~~---~~~~~~iiDtpG~~~~~~~--~~~~e~~~~~~~~~~~~~~d~-vi~v~d~~~~~~~~-~~ 103 (174)
T cd01895 42 -----------DVPFEY---DGKKYTLIDTAGIRRKGKV--EEGIEKYSVLRTLKAIERADV-VLLVIDATEGITEQ-DL 103 (174)
T ss_pred -----------eeEEEE---CCeeEEEEECCCCccccch--hccHHHHHHHHHHHHHhhcCe-EEEEEeCCCCcchh-HH
Confidence 000111 2245789999999765211 112222111223456778885 55666666554443 33
Q ss_pred HHHHHhCCCCCceEEEeccCCccCC
Q 012559 194 KLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
.+.+.+...+.+.++|+||+|+.+.
T Consensus 104 ~~~~~~~~~~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 104 RIAGLILEEGKALVIVVNKWDLVEK 128 (174)
T ss_pred HHHHHHHhcCCCEEEEEeccccCCc
Confidence 4555555567899999999999865
No 39
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.42 E-value=2.1e-12 Score=132.07 Aligned_cols=120 Identities=23% Similarity=0.299 Sum_probs=71.0
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccC--CCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRG--SGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~--~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~ 112 (461)
++.|++||.+|||||||||+|++.+ |+- ...+|+.|..
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak--~kIa~ypfTTl~Pnl-------------------------------------- 197 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAK--PKIANYHFTTLVPNL-------------------------------------- 197 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCC--CccccCCcceeceEE--------------------------------------
Confidence 3499999999999999999999875 221 1234444431
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCc---ccc
Q 012559 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD---IAT 189 (461)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d---~~~ 189 (461)
| . +..++...++|+||||+...+.. ...+.....+++.+.+. +++|+|++.. -..
T Consensus 198 ---G----------~--v~~~~~~~~~laD~PGliega~~------~~gLg~~fLrhier~~l-lI~VID~s~~~~~dp~ 255 (424)
T PRK12297 198 ---G----------V--VETDDGRSFVMADIPGLIEGASE------GVGLGHQFLRHIERTRV-IVHVIDMSGSEGRDPI 255 (424)
T ss_pred ---E----------E--EEEeCCceEEEEECCCCcccccc------cchHHHHHHHHHhhCCE-EEEEEeCCccccCChH
Confidence 1 0 11122357899999999864321 11122233455667885 5555555321 111
Q ss_pred HHHHHH---HHHhCC--CCCceEEEeccCCcc
Q 012559 190 SDAIKL---AREVDP--TGERTFGVLTKLDLM 216 (461)
Q Consensus 190 ~~~l~l---~~~~d~--~~~rti~VltK~D~~ 216 (461)
.+...+ ++.+++ .+.|.++|+||+|+.
T Consensus 256 e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~ 287 (424)
T PRK12297 256 EDYEKINKELKLYNPRLLERPQIVVANKMDLP 287 (424)
T ss_pred HHHHHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence 222223 333333 368999999999974
No 40
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.42 E-value=1.4e-12 Score=135.31 Aligned_cols=153 Identities=22% Similarity=0.258 Sum_probs=95.1
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCC-CccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhc
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~-~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 115 (461)
.|++||.+|+|||||+|+|+|......+. ..+||-..
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~------------------------------------------ 38 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRK------------------------------------------ 38 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCce------------------------------------------
Confidence 48999999999999999999976421111 12222221
Q ss_pred CCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHH
Q 012559 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (461)
Q Consensus 116 g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 195 (461)
...+.. +...+.+|||||+... ...+.+.+...+..+++.+| ++++|+++.......+. .+
T Consensus 39 -----------~~~~~~-~~~~~~liDTpG~~~~-----~~~~~~~~~~~~~~~~~~ad-~vl~vvD~~~~~~~~d~-~i 99 (429)
T TIGR03594 39 -----------YGDAEW-GGREFILIDTGGIEED-----DDGLDKQIREQAEIAIEEAD-VILFVVDGREGLTPEDE-EI 99 (429)
T ss_pred -----------EEEEEE-CCeEEEEEECCCCCCc-----chhHHHHHHHHHHHHHhhCC-EEEEEEeCCCCCCHHHH-HH
Confidence 111111 2246899999998643 34456677888999999999 56667777765554442 35
Q ss_pred HHHhCCCCCceEEEeccCCccCCCccHHHHHhCcccccCC-CeeEEEeCChhhhcccccHH
Q 012559 196 AREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQH-PWVGIVNRSQADINKNVDMI 255 (461)
Q Consensus 196 ~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~-g~~~v~~~s~~~~~~~~~~~ 255 (461)
++.+...+.++++|+||+|+........+. +.++. .++.+....+.++.+.++..
T Consensus 100 ~~~l~~~~~piilVvNK~D~~~~~~~~~~~-----~~lg~~~~~~vSa~~g~gv~~ll~~i 155 (429)
T TIGR03594 100 AKWLRKSGKPVILVANKIDGKKEDAVAAEF-----YSLGFGEPIPISAEHGRGIGDLLDAI 155 (429)
T ss_pred HHHHHHhCCCEEEEEECccCCcccccHHHH-----HhcCCCCeEEEeCCcCCChHHHHHHH
Confidence 565655689999999999998654332222 23333 24455544444444444433
No 41
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.42 E-value=9.7e-13 Score=137.87 Aligned_cols=126 Identities=21% Similarity=0.270 Sum_probs=79.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCC-CccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~-~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~ 112 (461)
..++|+++|.+|+|||||+|+|+|..+...+. ..+|+-+..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~-------------------------------------- 251 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVD-------------------------------------- 251 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcce--------------------------------------
Confidence 56899999999999999999999987522111 112222210
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHH-HHHHhcCCCeEEEEEecCCCccccHH
Q 012559 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENM-VRSYVEKPSCIILAISPANQDIATSD 191 (461)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~-v~~yi~~~~~iIL~V~~a~~d~~~~~ 191 (461)
..+++ +...+.||||||+.+.... ....+....+ ...+++++|+ +++|.++....+.++
T Consensus 252 -------------~~~~~---~~~~~~l~DTaG~~~~~~~---~~~~e~~~~~~~~~~i~~ad~-vilV~Da~~~~s~~~ 311 (472)
T PRK03003 252 -------------SLIEL---GGKTWRFVDTAGLRRRVKQ---ASGHEYYASLRTHAAIEAAEV-AVVLIDASEPISEQD 311 (472)
T ss_pred -------------EEEEE---CCEEEEEEECCCccccccc---cchHHHHHHHHHHHHHhcCCE-EEEEEeCCCCCCHHH
Confidence 01111 2245689999998654221 1112222222 3467889995 556667766655554
Q ss_pred HHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
. .++..+...+.++|+|+||+|+.+.
T Consensus 312 ~-~~~~~~~~~~~piIiV~NK~Dl~~~ 337 (472)
T PRK03003 312 Q-RVLSMVIEAGRALVLAFNKWDLVDE 337 (472)
T ss_pred H-HHHHHHHHcCCCEEEEEECcccCCh
Confidence 4 4666666678999999999999853
No 42
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.42 E-value=1.8e-12 Score=116.05 Aligned_cols=153 Identities=12% Similarity=0.147 Sum_probs=87.1
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
..+|+|+|.++||||||++++++.++.+.....++...
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~------------------------------------------ 40 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEF------------------------------------------ 40 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEE------------------------------------------
Confidence 36899999999999999999999876322211111000
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH---
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD--- 191 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~--- 191 (461)
....+.+.+ ....+.++|+||.... ..+...|+.+++++|+++. +....+-+.
T Consensus 41 ---------~~~~~~~~~-~~~~~~l~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d-~~~~~s~~~~~~ 96 (165)
T cd01868 41 ---------ATRSIQIDG-KTIKAQIWDTAGQERY-------------RAITSAYYRGAVGALLVYD-ITKKQTFENVER 96 (165)
T ss_pred ---------EEEEEEECC-EEEEEEEEeCCChHHH-------------HHHHHHHHCCCCEEEEEEE-CcCHHHHHHHHH
Confidence 001111111 1246889999996542 5567788898886555544 432222222
Q ss_pred HHHHHHHhCCCCCceEEEeccCCccCCCccHHHHHhCcccccCCCeeEEEeCChhhhccccc
Q 012559 192 AIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVD 253 (461)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (461)
++..+++..+.+.+.++|.||+|+........+.........+.+|+.+...++.+++..+.
T Consensus 97 ~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 158 (165)
T cd01868 97 WLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFK 158 (165)
T ss_pred HHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 23334444555689999999999875432111111101112345677777766655544433
No 43
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=6.6e-12 Score=126.02 Aligned_cols=128 Identities=27% Similarity=0.313 Sum_probs=86.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
.-++||++|.||+|||||||+|+..+. .+++..|.
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~dr-----sIVSpv~G---------------------------------------- 301 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDR-----SIVSPVPG---------------------------------------- 301 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCc-----eEeCCCCC----------------------------------------
Confidence 569999999999999999999999987 66666653
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
-+.|.|...+ .++..++.|+||.|+.+.. ...++..--+-+++.+..+| +|++|++|+..+..++.-
T Consensus 302 -------TTRDaiea~v-~~~G~~v~L~DTAGiRe~~----~~~iE~~gI~rA~k~~~~ad-vi~~vvda~~~~t~sd~~ 368 (531)
T KOG1191|consen 302 -------TTRDAIEAQV-TVNGVPVRLSDTAGIREES----NDGIEALGIERARKRIERAD-VILLVVDAEESDTESDLK 368 (531)
T ss_pred -------cchhhheeEe-ecCCeEEEEEecccccccc----CChhHHHhHHHHHHHHhhcC-EEEEEecccccccccchH
Confidence 1112222223 3666889999999998822 12233333456778888999 677777875544443322
Q ss_pred HHHHHhCC------------CCCceEEEeccCCccCCCc
Q 012559 194 KLAREVDP------------TGERTFGVLTKLDLMDKGT 220 (461)
Q Consensus 194 ~l~~~~d~------------~~~rti~VltK~D~~~~~~ 220 (461)
+++.+.. ...|.|.|.||.|+..+..
T Consensus 369 -i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~ 406 (531)
T KOG1191|consen 369 -IARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIP 406 (531)
T ss_pred -HHHHHHHhccceEEEeccccccceEEEechhhccCccc
Confidence 3333321 2378899999999997753
No 44
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.41 E-value=1.5e-12 Score=135.28 Aligned_cols=127 Identities=21% Similarity=0.286 Sum_probs=82.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCC-ccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~ 112 (461)
...+|+|+|.+|+|||||+|+|+|.+..+.+.. .+|+...
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~--------------------------------------- 212 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSI--------------------------------------- 212 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEE---------------------------------------
Confidence 568999999999999999999999864332221 1222111
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHH
Q 012559 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (461)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~ 192 (461)
...+. .+...+.+|||||+.+.... ....+.....-..+++..+| ++++|+++..+...++.
T Consensus 213 --------------~~~~~-~~~~~~~lvDT~G~~~~~~~--~~~~e~~~~~~~~~~~~~ad-~~ilViD~~~~~~~~~~ 274 (435)
T PRK00093 213 --------------DTPFE-RDGQKYTLIDTAGIRRKGKV--TEGVEKYSVIRTLKAIERAD-VVLLVIDATEGITEQDL 274 (435)
T ss_pred --------------EEEEE-ECCeeEEEEECCCCCCCcch--hhHHHHHHHHHHHHHHHHCC-EEEEEEeCCCCCCHHHH
Confidence 11111 23356899999999764321 11122222233456888898 46667777777666554
Q ss_pred HHHHHHhCCCCCceEEEeccCCccCC
Q 012559 193 IKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
.+++.+...+.+.++|+||+|+.++
T Consensus 275 -~i~~~~~~~~~~~ivv~NK~Dl~~~ 299 (435)
T PRK00093 275 -RIAGLALEAGRALVIVVNKWDLVDE 299 (435)
T ss_pred -HHHHHHHHcCCcEEEEEECccCCCH
Confidence 4667676678999999999999843
No 45
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.41 E-value=1.7e-12 Score=116.73 Aligned_cols=153 Identities=16% Similarity=0.163 Sum_probs=86.5
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
..+|+++|.+++|||||++++++.+|-+.. ..++
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~-~~t~--------------------------------------------- 36 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSF-ISTI--------------------------------------------- 36 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCccc-ccCc---------------------------------------------
Confidence 478999999999999999999998762210 0000
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH---
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD--- 191 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~--- 191 (461)
| .......+.+. .....+.++||||.... ..+...+++++|++|+++ +++...+-+.
T Consensus 37 -~----~~~~~~~~~~~-~~~~~l~l~D~~g~~~~-------------~~~~~~~~~~ad~~i~v~-d~~~~~s~~~~~~ 96 (167)
T cd01867 37 -G----IDFKIRTIELD-GKKIKLQIWDTAGQERF-------------RTITTAYYRGAMGIILVY-DITDEKSFENIRN 96 (167)
T ss_pred -c----ceEEEEEEEEC-CEEEEEEEEeCCchHHH-------------HHHHHHHhCCCCEEEEEE-ECcCHHHHHhHHH
Confidence 0 00000011111 12246889999995442 455678889999655554 4443222222
Q ss_pred HHHHHHHhCCCCCceEEEeccCCccCCCccHHHHHhCcccccCCCeeEEEeCChhhhccccc
Q 012559 192 AIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVD 253 (461)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (461)
++..++...+.+.++++|.||+|+.+......+.........+.+|+.+...+..++++.+.
T Consensus 97 ~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 158 (167)
T cd01867 97 WMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFF 158 (167)
T ss_pred HHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 23333344456789999999999985432111111111122344666666666555544443
No 46
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.40 E-value=4e-12 Score=132.20 Aligned_cols=152 Identities=22% Similarity=0.253 Sum_probs=91.3
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCC-CccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~-~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
|.|++||.+|+|||||+|+|+|......+. ..+|+-..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~----------------------------------------- 40 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRI----------------------------------------- 40 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccce-----------------------------------------
Confidence 789999999999999999999986411111 11111111
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHH
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 194 (461)
.-.+.. +...+.+|||||+... ..+....+...+..++..+|. +++|+++.......+. .
T Consensus 41 ------------~~~~~~-~~~~~~liDT~G~~~~-----~~~~~~~~~~~~~~~~~~ad~-il~vvd~~~~~~~~~~-~ 100 (435)
T PRK00093 41 ------------YGEAEW-LGREFILIDTGGIEPD-----DDGFEKQIREQAELAIEEADV-ILFVVDGRAGLTPADE-E 100 (435)
T ss_pred ------------EEEEEE-CCcEEEEEECCCCCCc-----chhHHHHHHHHHHHHHHhCCE-EEEEEECCCCCCHHHH-H
Confidence 001111 2267899999999862 223555677778889999995 5566666654443332 2
Q ss_pred HHHHhCCCCCceEEEeccCCccCCCccHHHHHhCcccccCCC-eeEEEeCChhhhccccc
Q 012559 195 LAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHP-WVGIVNRSQADINKNVD 253 (461)
Q Consensus 195 l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g-~~~v~~~s~~~~~~~~~ 253 (461)
+++.+...+.|+++|+||+|..+......+. +.++.+ ++.+......++.+.++
T Consensus 101 ~~~~l~~~~~piilv~NK~D~~~~~~~~~~~-----~~lg~~~~~~iSa~~g~gv~~l~~ 155 (435)
T PRK00093 101 IAKILRKSNKPVILVVNKVDGPDEEADAYEF-----YSLGLGEPYPISAEHGRGIGDLLD 155 (435)
T ss_pred HHHHHHHcCCcEEEEEECccCccchhhHHHH-----HhcCCCCCEEEEeeCCCCHHHHHH
Confidence 4444444589999999999975432222222 223333 45555555544444433
No 47
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.40 E-value=2.5e-12 Score=115.77 Aligned_cols=152 Identities=14% Similarity=0.161 Sum_probs=86.5
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
...|+|||.+++|||||++++++..+-+......+...
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~------------------------------------------ 41 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEF------------------------------------------ 41 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeE------------------------------------------
Confidence 46899999999999999999999876332221111110
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHH
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 194 (461)
....+.+.+ ....+.++||||... ...+...|+++++++++ |.+++...+-+....
T Consensus 42 ---------~~~~~~~~~-~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~il~-v~d~~~~~s~~~~~~ 97 (168)
T cd01866 42 ---------GARMITIDG-KQIKLQIWDTAGQES-------------FRSITRSYYRGAAGALL-VYDITRRETFNHLTS 97 (168)
T ss_pred ---------EEEEEEECC-EEEEEEEEECCCcHH-------------HHHHHHHHhccCCEEEE-EEECCCHHHHHHHHH
Confidence 001111111 124688999999432 25677889999997555 555554333333333
Q ss_pred HHHHh---CCCCCceEEEeccCCccCCCc-cHHHHHhCcccccCCCeeEEEeCChhhhccccc
Q 012559 195 LAREV---DPTGERTFGVLTKLDLMDKGT-NALEVLEGRSYRLQHPWVGIVNRSQADINKNVD 253 (461)
Q Consensus 195 l~~~~---d~~~~rti~VltK~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (461)
+..++ ...+.+.++|.||+|+..+.. ...+. .......+..|+.+...+..++++.+.
T Consensus 98 ~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~-~~~~~~~~~~~~e~Sa~~~~~i~~~~~ 159 (168)
T cd01866 98 WLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEG-EAFAKEHGLIFMETSAKTASNVEEAFI 159 (168)
T ss_pred HHHHHHHhCCCCCcEEEEEECcccccccCCCHHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 43333 223688999999999974332 11111 111122344566666665555544433
No 48
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.39 E-value=2.1e-12 Score=141.68 Aligned_cols=125 Identities=19% Similarity=0.291 Sum_probs=85.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
.+|.|+++|.+|+|||||+|+|+|..+ .++...|.
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~-----~iv~~~pG---------------------------------------- 308 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRRE-----AVVEDTPG---------------------------------------- 308 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCc-----eeecCCCC----------------------------------------
Confidence 568999999999999999999999764 22222221
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
++.+.+..... .+...+.+|||||+... ...+...+...+..|+..+|. +|+|+|+...+...+.
T Consensus 309 -------vT~d~~~~~~~-~~~~~~~liDT~G~~~~-----~~~~~~~~~~~~~~~~~~aD~-iL~VvDa~~~~~~~d~- 373 (712)
T PRK09518 309 -------VTRDRVSYDAE-WAGTDFKLVDTGGWEAD-----VEGIDSAIASQAQIAVSLADA-VVFVVDGQVGLTSTDE- 373 (712)
T ss_pred -------eeEEEEEEEEE-ECCEEEEEEeCCCcCCC-----CccHHHHHHHHHHHHHHhCCE-EEEEEECCCCCCHHHH-
Confidence 01111111111 12356899999998753 234666677888899999994 6667777665544443
Q ss_pred HHHHHhCCCCCceEEEeccCCccCC
Q 012559 194 KLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
.+++.+...+.|+|+|+||+|+...
T Consensus 374 ~i~~~Lr~~~~pvIlV~NK~D~~~~ 398 (712)
T PRK09518 374 RIVRMLRRAGKPVVLAVNKIDDQAS 398 (712)
T ss_pred HHHHHHHhcCCCEEEEEECcccccc
Confidence 3566666778999999999998754
No 49
>PRK04213 GTP-binding protein; Provisional
Probab=99.39 E-value=4.5e-12 Score=117.58 Aligned_cols=124 Identities=21% Similarity=0.360 Sum_probs=74.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCC-ccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~ 112 (461)
..+.|+++|.+|+|||||+|+|+|..+ +.+.. .+|+.+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~-~~~~~~~~t~~~---------------------------------------- 46 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKV-RVGKRPGVTRKP---------------------------------------- 46 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCceeeCc----------------------------------------
Confidence 568999999999999999999999864 32211 111111
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhc-CCC--eEEEEEecCCCcccc
Q 012559 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE-KPS--CIILAISPANQDIAT 189 (461)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~-~~~--~iIL~V~~a~~d~~~ 189 (461)
..+.. .++++|||||+...... +....+.++.+...|+. ..+ .+++.|+++......
T Consensus 47 -------------~~~~~-----~~~~l~Dt~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~ 106 (201)
T PRK04213 47 -------------NHYDW-----GDFILTDLPGFGFMSGV--PKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEI 106 (201)
T ss_pred -------------eEEee-----cceEEEeCCcccccccc--CHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCcccccc
Confidence 11111 15899999997443211 22234455667777765 332 245556666432110
Q ss_pred ----------HHHHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 190 ----------SDAIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 190 ----------~~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
.....+.+.+...+.|.++|+||+|+.+.
T Consensus 107 ~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~ 145 (201)
T PRK04213 107 IERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKN 145 (201)
T ss_pred ccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCc
Confidence 11122344444457899999999998754
No 50
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.39 E-value=2.7e-12 Score=140.48 Aligned_cols=159 Identities=19% Similarity=0.292 Sum_probs=93.6
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
..+|+++|.+|+|||||+|+|+|.+. .++. .|
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn-----~p------------------------------------------ 34 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ-RVGN-----WA------------------------------------------ 34 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC-ccCC-----CC------------------------------------------
Confidence 36899999999999999999999864 1111 11
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhc--CCCeEEEEEecCCCccccHHH
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE--KPSCIILAISPANQDIATSDA 192 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~--~~~~iIL~V~~a~~d~~~~~~ 192 (461)
| .++ +.... ....+...+.+|||||+.+......+.+.. +.++..|+. ++|. ++.|+|++.- +..
T Consensus 35 -G--vTv--e~k~g-~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~---E~i~~~~l~~~~aD~-vI~VvDat~l---er~ 101 (772)
T PRK09554 35 -G--VTV--ERKEG-QFSTTDHQVTLVDLPGTYSLTTISSQTSLD---EQIACHYILSGDADL-LINVVDASNL---ERN 101 (772)
T ss_pred -C--ceE--eeEEE-EEEcCceEEEEEECCCccccccccccccHH---HHHHHHHHhccCCCE-EEEEecCCcc---hhh
Confidence 1 001 11111 122234678999999998864322222333 334566754 6775 5666677542 223
Q ss_pred HHHHHHhCCCCCceEEEeccCCccCCCccHHHHHhCcccccCCCeeEEEeCChhhhcccccHH
Q 012559 193 IKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMI 255 (461)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (461)
+.+..++...+.|+++|+||+|+.++.....+. +.....++.+++.+..+...++++..+..
T Consensus 102 l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~-~~L~~~LG~pVvpiSA~~g~GIdeL~~~I 163 (772)
T PRK09554 102 LYLTLQLLELGIPCIVALNMLDIAEKQNIRIDI-DALSARLGCPVIPLVSTRGRGIEALKLAI 163 (772)
T ss_pred HHHHHHHHHcCCCEEEEEEchhhhhccCcHHHH-HHHHHHhCCCEEEEEeecCCCHHHHHHHH
Confidence 445566666789999999999987543221221 11123345566666666665555444433
No 51
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.39 E-value=2.6e-12 Score=114.38 Aligned_cols=68 Identities=25% Similarity=0.323 Sum_probs=42.7
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccH--HHHHHHHHhCCCCCceEEEecc
Q 012559 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--DAIKLAREVDPTGERTFGVLTK 212 (461)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~--~~l~l~~~~d~~~~rti~VltK 212 (461)
...+.+|||||..+. ......++..+|+ +++|.++..++..+ +.+.+++... ..+.++|+||
T Consensus 50 ~~~~~~~DtpG~~~~-------------~~~~~~~~~~ad~-ii~V~d~~~~~~~~~~~~~~~~~~~~--~~~~ilv~NK 113 (164)
T cd04171 50 GKRLGFIDVPGHEKF-------------IKNMLAGAGGIDL-VLLVVAADEGIMPQTREHLEILELLG--IKRGLVVLTK 113 (164)
T ss_pred CcEEEEEECCChHHH-------------HHHHHhhhhcCCE-EEEEEECCCCccHhHHHHHHHHHHhC--CCcEEEEEEC
Confidence 357899999996432 3445577888995 55566665433222 2222333321 2389999999
Q ss_pred CCccCC
Q 012559 213 LDLMDK 218 (461)
Q Consensus 213 ~D~~~~ 218 (461)
+|+...
T Consensus 114 ~Dl~~~ 119 (164)
T cd04171 114 ADLVDE 119 (164)
T ss_pred ccccCH
Confidence 999754
No 52
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.39 E-value=9.6e-12 Score=109.70 Aligned_cols=121 Identities=26% Similarity=0.318 Sum_probs=74.1
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCc-cccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI-VTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~-~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
..|+++|.+++|||||+|+|+|..+...+... +|+.+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~------------------------------------------ 39 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDV------------------------------------------ 39 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccce------------------------------------------
Confidence 36999999999999999999998652211111 11111
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHH
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 194 (461)
....+. .....++++||||+.... ..........+..++.+++. +++|.++..........
T Consensus 40 -----------~~~~~~-~~~~~~~i~DtpG~~~~~-----~~~~~~~~~~~~~~~~~~~~-~v~v~d~~~~~~~~~~~- 100 (157)
T cd04164 40 -----------IEESID-IGGIPVRLIDTAGIRETE-----DEIEKIGIERAREAIEEADL-VLFVIDASRGLDEEDLE- 100 (157)
T ss_pred -----------EEEEEE-eCCEEEEEEECCCcCCCc-----chHHHHHHHHHHHHHhhCCE-EEEEEECCCCCCHHHHH-
Confidence 011111 123578999999987642 22222223345567778885 55666666544433332
Q ss_pred HHHHhCCCCCceEEEeccCCccCCC
Q 012559 195 LAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 195 l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
+... ..+.+.++|+||+|+.+..
T Consensus 101 ~~~~--~~~~~vi~v~nK~D~~~~~ 123 (157)
T cd04164 101 ILEL--PADKPIIVVLNKSDLLPDS 123 (157)
T ss_pred HHHh--hcCCCEEEEEEchhcCCcc
Confidence 3333 3468999999999998654
No 53
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.39 E-value=4.6e-12 Score=116.71 Aligned_cols=112 Identities=12% Similarity=0.193 Sum_probs=70.7
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---HHHHHHHHHhCCCCCceEEEecc
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---SDAIKLAREVDPTGERTFGVLTK 212 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~---~~~l~l~~~~d~~~~rti~VltK 212 (461)
..+.|+||||..+. ..+...|++.+|++| +|.+++...+- ..++..+++..+.+.|+++|+||
T Consensus 50 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~ad~~i-~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK 115 (191)
T cd04112 50 VKLQIWDTAGQERF-------------RSVTHAYYRDAHALL-LLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNK 115 (191)
T ss_pred EEEEEEeCCCcHHH-------------HHhhHHHccCCCEEE-EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEc
Confidence 46889999994332 456678899999655 55555432221 22334455556667899999999
Q ss_pred CCccCCCc----cHHHHHhCcccccCCCeeEEEeCChhhhcccccHHHHHHHHHhhh
Q 012559 213 LDLMDKGT----NALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARRKEREYF 265 (461)
Q Consensus 213 ~D~~~~~~----~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~E~~ff 265 (461)
+|+..+.. +...+. .....+|+.+...+..++++.+..+.....+....
T Consensus 116 ~Dl~~~~~~~~~~~~~l~----~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~~~ 168 (191)
T cd04112 116 ADMSGERVVKREDGERLA----KEYGVPFMETSAKTGLNVELAFTAVAKELKHRKYE 168 (191)
T ss_pred ccchhccccCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhccc
Confidence 99974321 122222 22345688888887777777777777666666544
No 54
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.38 E-value=5.4e-12 Score=138.41 Aligned_cols=126 Identities=25% Similarity=0.286 Sum_probs=80.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCC-ccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFL-PRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~l-P~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~ 112 (461)
+.+.|+++|.+|+|||||+|+|+|.++. +.....+|+-+..
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~-------------------------------------- 490 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVD-------------------------------------- 490 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcce--------------------------------------
Confidence 5699999999999999999999998751 1111122222210
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHH-HHHHHhcCCCeEEEEEecCCCccccHH
Q 012559 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIEN-MVRSYVEKPSCIILAISPANQDIATSD 191 (461)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~-~v~~yi~~~~~iIL~V~~a~~d~~~~~ 191 (461)
..+.+ +..++.||||||+.+.... ....+.... ....+++.+|. +++|++++...+.++
T Consensus 491 -------------~~~~~---~~~~~~liDTaG~~~~~~~---~~~~e~~~~~r~~~~i~~adv-vilViDat~~~s~~~ 550 (712)
T PRK09518 491 -------------EIVEI---DGEDWLFIDTAGIKRRQHK---LTGAEYYSSLRTQAAIERSEL-ALFLFDASQPISEQD 550 (712)
T ss_pred -------------eEEEE---CCCEEEEEECCCcccCccc---chhHHHHHHHHHHHHhhcCCE-EEEEEECCCCCCHHH
Confidence 01111 2356789999998754211 111122222 24567888985 556677776665555
Q ss_pred HHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
. .++..+...+.++|+|+||+|+.+.
T Consensus 551 ~-~i~~~~~~~~~piIiV~NK~DL~~~ 576 (712)
T PRK09518 551 L-KVMSMAVDAGRALVLVFNKWDLMDE 576 (712)
T ss_pred H-HHHHHHHHcCCCEEEEEEchhcCCh
Confidence 4 3666666678999999999999854
No 55
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.38 E-value=2.9e-12 Score=114.00 Aligned_cols=116 Identities=20% Similarity=0.236 Sum_probs=69.7
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhcC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 116 (461)
.|+++|.+|||||||++++++.++.+......+....
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~------------------------------------------- 38 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFL------------------------------------------- 38 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEE-------------------------------------------
Confidence 5899999999999999999998873321111111110
Q ss_pred CCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHH
Q 012559 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLA 196 (461)
Q Consensus 117 ~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~ 196 (461)
...+.+.+ ....+.++||||.... ..+...++..++++ ++|.+++..-+-+....+.
T Consensus 39 --------~~~~~~~~-~~~~l~~~D~~G~~~~-------------~~~~~~~~~~~~~i-i~v~d~~~~~s~~~~~~~~ 95 (161)
T cd01861 39 --------SKTMYLED-KTVRLQLWDTAGQERF-------------RSLIPSYIRDSSVA-VVVYDITNRQSFDNTDKWI 95 (161)
T ss_pred --------EEEEEECC-EEEEEEEEECCCcHHH-------------HHHHHHHhccCCEE-EEEEECcCHHHHHHHHHHH
Confidence 00011111 1135889999995432 56788899999964 4555554322222222222
Q ss_pred H---HhCCCCCceEEEeccCCccCC
Q 012559 197 R---EVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 197 ~---~~d~~~~rti~VltK~D~~~~ 218 (461)
. ...+.+.|+++|+||+|+..+
T Consensus 96 ~~~~~~~~~~~~iilv~nK~D~~~~ 120 (161)
T cd01861 96 DDVRDERGNDVIIVLVGNKTDLSDK 120 (161)
T ss_pred HHHHHhCCCCCEEEEEEEChhcccc
Confidence 2 222335899999999999643
No 56
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.37 E-value=2.8e-12 Score=113.20 Aligned_cols=77 Identities=19% Similarity=0.327 Sum_probs=50.4
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCc
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 215 (461)
..+.++||||+.... ......+......++..+|. +++|.++.......+. .+.+.+...+.|+++|+||+|+
T Consensus 45 ~~~~i~DtpG~~~~~-----~~~~~~~~~~~~~~~~~~d~-ii~v~d~~~~~~~~~~-~~~~~~~~~~~piiiv~nK~D~ 117 (157)
T cd01894 45 REFILIDTGGIEPDD-----EGISKEIREQAELAIEEADV-ILFVVDGREGLTPADE-EIAKYLRKSKKPVILVVNKVDN 117 (157)
T ss_pred eEEEEEECCCCCCch-----hHHHHHHHHHHHHHHHhCCE-EEEEEeccccCCccHH-HHHHHHHhcCCCEEEEEECccc
Confidence 578999999998742 12344445566778888885 5555555543333222 2444444457999999999999
Q ss_pred cCCC
Q 012559 216 MDKG 219 (461)
Q Consensus 216 ~~~~ 219 (461)
....
T Consensus 118 ~~~~ 121 (157)
T cd01894 118 IKEE 121 (157)
T ss_pred CChH
Confidence 8643
No 57
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.37 E-value=1e-11 Score=108.94 Aligned_cols=77 Identities=23% Similarity=0.345 Sum_probs=50.7
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCC
Q 012559 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (461)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 214 (461)
..++.++||||+...... ..........++..+|. +++|+++.......... +.......+.++++|+||+|
T Consensus 44 ~~~~~~~Dt~g~~~~~~~------~~~~~~~~~~~~~~~d~-il~v~~~~~~~~~~~~~-~~~~~~~~~~~~ivv~nK~D 115 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGL------GREREELARRVLERADL-ILFVVDADLRADEEEEK-LLELLRERGKPVLLVLNKID 115 (163)
T ss_pred CCcEEEEECCCCCccccc------hhhHHHHHHHHHHhCCE-EEEEEeCCCCCCHHHHH-HHHHHHhcCCeEEEEEEccc
Confidence 478999999999875321 11113566778888995 55555555444333332 34444455789999999999
Q ss_pred ccCCC
Q 012559 215 LMDKG 219 (461)
Q Consensus 215 ~~~~~ 219 (461)
+....
T Consensus 116 ~~~~~ 120 (163)
T cd00880 116 LLPEE 120 (163)
T ss_pred cCChh
Confidence 98654
No 58
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.37 E-value=5.5e-12 Score=113.18 Aligned_cols=105 Identities=12% Similarity=0.140 Sum_probs=59.1
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccH---HHHHHHHHhCCCCCceEEEecc
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DAIKLAREVDPTGERTFGVLTK 212 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~---~~l~l~~~~d~~~~rti~VltK 212 (461)
..+.++||||..+. ..+...|+++++++++++ +.....+-. +++..++...+...|.++|.||
T Consensus 50 ~~~~l~Dt~g~~~~-------------~~~~~~~~~~~~~~l~v~-d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK 115 (165)
T cd01865 50 VKLQIWDTAGQERY-------------RTITTAYYRGAMGFILMY-DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNK 115 (165)
T ss_pred EEEEEEECCChHHH-------------HHHHHHHccCCcEEEEEE-ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEEC
Confidence 46889999996442 456788899999655554 443322222 2333334444456789999999
Q ss_pred CCccCCCcc-HHHHHhCcccccCCCeeEEEeCChhhhcccccHH
Q 012559 213 LDLMDKGTN-ALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMI 255 (461)
Q Consensus 213 ~D~~~~~~~-~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (461)
+|+.+.... ..+..+ ....++..|+.+.+.++.++.+.++.+
T Consensus 116 ~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gv~~l~~~l 158 (165)
T cd01865 116 CDMEDERVVSSERGRQ-LADQLGFEFFEASAKENINVKQVFERL 158 (165)
T ss_pred cccCcccccCHHHHHH-HHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 999754321 111111 111233456666665555554444433
No 59
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.37 E-value=8.2e-12 Score=115.84 Aligned_cols=158 Identities=15% Similarity=0.137 Sum_probs=84.6
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhcC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 116 (461)
+|+|+|.+|+|||||++++++.+| +....+++....
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f-~~~~~pt~~~~~------------------------------------------- 37 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEF-PEEYIPTEHRRL------------------------------------------- 37 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCC-CcccCCcccccc-------------------------------------------
Confidence 589999999999999999999876 322211111100
Q ss_pred CCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHH
Q 012559 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLA 196 (461)
Q Consensus 117 ~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~ 196 (461)
.. ..+.+ ......+.|+||||....+ .............+++.+|++| +|.+++...+-..+..+.
T Consensus 38 -----~~--~~i~~-~~~~~~l~i~Dt~G~~~~~-----~~~~~e~~~~~~~~~~~ad~ii-lv~D~~~~~S~~~~~~~~ 103 (198)
T cd04142 38 -----YR--PAVVL-SGRVYDLHILDVPNMQRYP-----GTAGQEWMDPRFRGLRNSRAFI-LVYDICSPDSFHYVKLLR 103 (198)
T ss_pred -----ce--eEEEE-CCEEEEEEEEeCCCcccCC-----ccchhHHHHHHHhhhccCCEEE-EEEECCCHHHHHHHHHHH
Confidence 00 00111 1122567899999986542 1111122334566788999655 445554332222222222
Q ss_pred HHh------CCCCCceEEEeccCCccCCCccHHHHHhCc-ccccCCCeeEEEeCChhhhcccc
Q 012559 197 REV------DPTGERTFGVLTKLDLMDKGTNALEVLEGR-SYRLQHPWVGIVNRSQADINKNV 252 (461)
Q Consensus 197 ~~~------d~~~~rti~VltK~D~~~~~~~~~~~l~~~-~~~l~~g~~~v~~~s~~~~~~~~ 252 (461)
+++ .+.+.|+++|.||+|+........+.++.. ......+|+.+...++.++++.+
T Consensus 104 ~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf 166 (198)
T cd04142 104 QQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLF 166 (198)
T ss_pred HHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHH
Confidence 222 245689999999999965322111111100 11234567776666655544433
No 60
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.37 E-value=4.9e-12 Score=113.00 Aligned_cols=149 Identities=16% Similarity=0.201 Sum_probs=81.1
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhcC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 116 (461)
+|+|+|.+|||||||++++++..+. .....++...
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~-~~~~~t~~~~-------------------------------------------- 36 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFV-DDYDPTIEDS-------------------------------------------- 36 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC-cccCCchhhh--------------------------------------------
Confidence 6899999999999999999988762 2111100000
Q ss_pred CCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHH--
Q 012559 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK-- 194 (461)
Q Consensus 117 ~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~-- 194 (461)
+ ...+. .......+.++||||..+. ..+...|+.+.+++++++ ++...-+-.....
T Consensus 37 ----~---~~~~~-~~~~~~~l~i~Dt~g~~~~-------------~~~~~~~~~~~~~~i~v~-d~~~~~s~~~~~~~~ 94 (164)
T smart00173 37 ----Y---RKQIE-IDGEVCLLDILDTAGQEEF-------------SAMRDQYMRTGEGFLLVY-SITDRQSFEEIKKFR 94 (164)
T ss_pred ----E---EEEEE-ECCEEEEEEEEECCCcccc-------------hHHHHHHHhhCCEEEEEE-ECCCHHHHHHHHHHH
Confidence 0 00011 1122356789999997653 456677888888655444 4443222122211
Q ss_pred --HHHHhCCCCCceEEEeccCCccCCCccHHHHHhCcccccCCCeeEEEeCChhhhcccc
Q 012559 195 --LAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNV 252 (461)
Q Consensus 195 --l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (461)
+.+.......|.++|.||+|+.+......+............|+.+...+..++++.+
T Consensus 95 ~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 154 (164)
T smart00173 95 EQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAF 154 (164)
T ss_pred HHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHH
Confidence 2222333467999999999997543211111110111223456666666555544433
No 61
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.37 E-value=4.2e-12 Score=113.16 Aligned_cols=115 Identities=17% Similarity=0.195 Sum_probs=69.5
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhcC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 116 (461)
.|+|+|.++||||||++++++..+-+......+...
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~-------------------------------------------- 37 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDF-------------------------------------------- 37 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEE--------------------------------------------
Confidence 589999999999999999999876221111111000
Q ss_pred CCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHH
Q 012559 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLA 196 (461)
Q Consensus 117 ~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~ 196 (461)
....+.+. .....+.++|+||.... ..+...++.++|.+|+++. ++...+.+....+.
T Consensus 38 -------~~~~~~~~-~~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~ilv~d-~~~~~s~~~~~~~l 95 (164)
T smart00175 38 -------KTKTIEVD-GKRVKLQIWDTAGQERF-------------RSITSSYYRGAVGALLVYD-ITNRESFENLKNWL 95 (164)
T ss_pred -------EEEEEEEC-CEEEEEEEEECCChHHH-------------HHHHHHHhCCCCEEEEEEE-CCCHHHHHHHHHHH
Confidence 00011111 11246789999995432 4567788899997666554 44322333332233
Q ss_pred HH---hCCCCCceEEEeccCCccC
Q 012559 197 RE---VDPTGERTFGVLTKLDLMD 217 (461)
Q Consensus 197 ~~---~d~~~~rti~VltK~D~~~ 217 (461)
.. ....+.|.++|+||+|+..
T Consensus 96 ~~~~~~~~~~~pivvv~nK~D~~~ 119 (164)
T smart00175 96 KELREYADPNVVIMLVGNKSDLED 119 (164)
T ss_pred HHHHHhCCCCCeEEEEEEchhccc
Confidence 32 2324789999999999875
No 62
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.37 E-value=5.6e-12 Score=112.35 Aligned_cols=116 Identities=22% Similarity=0.218 Sum_probs=69.2
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 115 (461)
..|+++|.+|||||||++++++..| +.....+++..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~-~~~~~~t~~~~------------------------------------------- 37 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDS------------------------------------------- 37 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CcccCCchhhh-------------------------------------------
Confidence 4799999999999999999998765 21111111000
Q ss_pred CCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHH
Q 012559 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (461)
Q Consensus 116 g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 195 (461)
+ . ..+.+. .....+.|+||||..+. ..+...|+++++++++++. .+...+-.....+
T Consensus 38 -----~-~--~~~~~~-~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~~~~ilv~d-~~~~~s~~~~~~~ 94 (163)
T cd04136 38 -----Y-R--KQIEVD-GQQCMLEILDTAGTEQF-------------TAMRDLYIKNGQGFVLVYS-ITSQSSFNDLQDL 94 (163)
T ss_pred -----E-E--EEEEEC-CEEEEEEEEECCCcccc-------------chHHHHHhhcCCEEEEEEE-CCCHHHHHHHHHH
Confidence 0 0 001111 12246789999997653 4566788999997665554 3322222222222
Q ss_pred ---HHHh-CCCCCceEEEeccCCccCC
Q 012559 196 ---AREV-DPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 196 ---~~~~-d~~~~rti~VltK~D~~~~ 218 (461)
+... ...+.|.++|.||+|+.+.
T Consensus 95 ~~~i~~~~~~~~~piilv~nK~Dl~~~ 121 (163)
T cd04136 95 REQILRVKDTENVPMVLVGNKCDLEDE 121 (163)
T ss_pred HHHHHHhcCCCCCCEEEEEECcccccc
Confidence 2222 2346899999999998753
No 63
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.37 E-value=6.6e-12 Score=111.99 Aligned_cols=69 Identities=19% Similarity=0.197 Sum_probs=44.5
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHH----HHHHhCCCCCceEEEec
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK----LAREVDPTGERTFGVLT 211 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~----l~~~~d~~~~rti~Vlt 211 (461)
..+.++||||..+. ..+...|++..+++++++ ++....+-..... +.+.....+.|+++|+|
T Consensus 50 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~ilv~-d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~N 115 (164)
T cd04145 50 AILDILDTAGQEEF-------------SAMREQYMRTGEGFLLVF-SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGN 115 (164)
T ss_pred EEEEEEECCCCcch-------------hHHHHHHHhhCCEEEEEE-ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEee
Confidence 46889999996543 456778899999766555 4443222222221 22223445789999999
Q ss_pred cCCccCC
Q 012559 212 KLDLMDK 218 (461)
Q Consensus 212 K~D~~~~ 218 (461)
|+|+...
T Consensus 116 K~Dl~~~ 122 (164)
T cd04145 116 KADLEHQ 122 (164)
T ss_pred Ccccccc
Confidence 9999754
No 64
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.36 E-value=5e-12 Score=113.33 Aligned_cols=151 Identities=14% Similarity=0.196 Sum_probs=83.4
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 115 (461)
..|+++|.+|+|||||++++++.+|-+ . ..|+ .
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~-~-----~~~t-----------------------------------------~ 35 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTE-S-----YIST-----------------------------------------I 35 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC-C-----CCCc-----------------------------------------c
Confidence 579999999999999999999887621 1 0110 0
Q ss_pred CCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH---H
Q 012559 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD---A 192 (461)
Q Consensus 116 g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~---~ 192 (461)
| .......+.+. .....+.++||||..+. ..+...|+++++++|+++. ++..-+-.. +
T Consensus 36 ~----~~~~~~~~~~~-~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~~~ii~v~d-~~~~~s~~~l~~~ 96 (166)
T cd01869 36 G----VDFKIRTIELD-GKTIKLQIWDTAGQERF-------------RTITSSYYRGAHGIIIVYD-VTDQESFNNVKQW 96 (166)
T ss_pred c----eeEEEEEEEEC-CEEEEEEEEECCCcHhH-------------HHHHHHHhCcCCEEEEEEE-CcCHHHHHhHHHH
Confidence 0 00000011111 11246789999995442 5567788999997665554 432212222 2
Q ss_pred HHHHHHhCCCCCceEEEeccCCccCCCccHHHHHhCcccccCCCeeEEEeCChhhhcccc
Q 012559 193 IKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNV 252 (461)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (461)
+..++.....+.+.++|.||+|+........+............|+.+....+.++.+.+
T Consensus 97 ~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 156 (166)
T cd01869 97 LQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAF 156 (166)
T ss_pred HHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHH
Confidence 223333443468999999999986543211111111112233456666666555544443
No 65
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.36 E-value=4e-12 Score=111.93 Aligned_cols=115 Identities=19% Similarity=0.207 Sum_probs=69.6
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 115 (461)
.+|+++|.++||||||+|++++..+.+......+ +
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~--~------------------------------------------- 35 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIG--V------------------------------------------- 35 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCcee--e-------------------------------------------
Confidence 3699999999999999999999876332111000 0
Q ss_pred CCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHH
Q 012559 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (461)
Q Consensus 116 g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 195 (461)
+.....+.+. .....+.++|+||.... ..+...++++.|++| +|.++...-..+....+
T Consensus 36 ------~~~~~~~~~~-~~~~~~~l~D~~g~~~~-------------~~~~~~~~~~~d~ii-~v~d~~~~~~~~~~~~~ 94 (159)
T cd00154 36 ------DFKSKTIEID-GKTVKLQIWDTAGQERF-------------RSITPSYYRGAHGAI-LVYDITNRESFENLDKW 94 (159)
T ss_pred ------eeEEEEEEEC-CEEEEEEEEecCChHHH-------------HHHHHHHhcCCCEEE-EEEECCCHHHHHHHHHH
Confidence 0000111111 12256789999996432 457788899999655 44454432222222222
Q ss_pred ---HHHhCCCCCceEEEeccCCcc
Q 012559 196 ---AREVDPTGERTFGVLTKLDLM 216 (461)
Q Consensus 196 ---~~~~d~~~~rti~VltK~D~~ 216 (461)
+......+.++++|+||+|+.
T Consensus 95 ~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 95 LKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred HHHHHHhCCCCCcEEEEEEccccc
Confidence 333333468999999999997
No 66
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.36 E-value=1.1e-11 Score=118.71 Aligned_cols=128 Identities=18% Similarity=0.224 Sum_probs=79.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCC-ccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~ 112 (461)
...+|+|+|.+|+|||||+|+|+|....+++.. .+|+.+....
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~------------------------------------ 73 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVS------------------------------------ 73 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEE------------------------------------
Confidence 568999999999999999999999876554432 2333332111
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhc--CCCeEEEEEecCCC-cccc
Q 012559 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE--KPSCIILAISPANQ-DIAT 189 (461)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~--~~~~iIL~V~~a~~-d~~~ 189 (461)
. ..+...+++|||||+.....+ ....+.+...+.+|+. ..+ +||+|...+. .+..
T Consensus 74 -----------------~-~~~g~~i~vIDTPGl~~~~~~---~~~~~~~~~~I~~~l~~~~id-vIL~V~rlD~~r~~~ 131 (249)
T cd01853 74 -----------------G-TVDGFKLNIIDTPGLLESVMD---QRVNRKILSSIKRYLKKKTPD-VVLYVDRLDMYRRDY 131 (249)
T ss_pred -----------------E-EECCeEEEEEECCCcCcchhh---HHHHHHHHHHHHHHHhccCCC-EEEEEEcCCCCCCCH
Confidence 0 112367899999999875321 1234445666778887 345 5667765443 2222
Q ss_pred H--HHHHHHHHhCC--CCCceEEEeccCCccCCC
Q 012559 190 S--DAIKLAREVDP--TGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 190 ~--~~l~l~~~~d~--~~~rti~VltK~D~~~~~ 219 (461)
. ..++.+++.-. .-.++++|+||+|...+.
T Consensus 132 ~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 132 LDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence 2 23333333211 125799999999998654
No 67
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.35 E-value=1e-11 Score=111.50 Aligned_cols=151 Identities=13% Similarity=0.172 Sum_probs=84.7
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 115 (461)
-.|+++|++++|||||++++++..|.+.... ++...
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~-t~~~~------------------------------------------- 38 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPH-TIGVE------------------------------------------- 38 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCc-cccee-------------------------------------------
Confidence 3699999999999999999998876322111 00000
Q ss_pred CCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccH---HH
Q 012559 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DA 192 (461)
Q Consensus 116 g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~---~~ 192 (461)
+. ...+.+.+ ....+.++||||.... ..+...|+++++++|+++...+ ..+-+ .+
T Consensus 39 -----~~--~~~~~~~~-~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~~~~ilv~d~~~-~~s~~~~~~~ 96 (166)
T cd04122 39 -----FG--TRIIEVNG-QKIKLQIWDTAGQERF-------------RAVTRSYYRGAAGALMVYDITR-RSTYNHLSSW 96 (166)
T ss_pred -----EE--EEEEEECC-EEEEEEEEECCCcHHH-------------HHHHHHHhcCCCEEEEEEECCC-HHHHHHHHHH
Confidence 00 00111111 1246789999995432 5667889999997666655433 22222 22
Q ss_pred HHHHHHhCCCCCceEEEeccCCccCCCccHHHHHhCcccccCCCeeEEEeCChhhhcccc
Q 012559 193 IKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNV 252 (461)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (461)
+..++.....+.+.++|.||+|+..+.....+.........+..|+.+...+..++.+.+
T Consensus 97 ~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f 156 (166)
T cd04122 97 LTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAF 156 (166)
T ss_pred HHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 223333444467899999999997543211111111111223456666666655554433
No 68
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.35 E-value=7.7e-12 Score=111.47 Aligned_cols=150 Identities=15% Similarity=0.155 Sum_probs=84.3
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhcC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 116 (461)
.|+|+|.+++|||||+++|++..+-+......+..
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~--------------------------------------------- 36 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVE--------------------------------------------- 36 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee---------------------------------------------
Confidence 58999999999999999999887632221111100
Q ss_pred CCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHH---H
Q 012559 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA---I 193 (461)
Q Consensus 117 ~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~---l 193 (461)
.....+.+. .....+.++|+||..+. ..+...++++++++|+++ +++...+.... +
T Consensus 37 ------~~~~~~~~~-~~~~~l~l~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~-d~~~~~s~~~~~~~~ 95 (161)
T cd04113 37 ------FGSKIIRVG-GKRVKLQIWDTAGQERF-------------RSVTRSYYRGAAGALLVY-DITNRTSFEALPTWL 95 (161)
T ss_pred ------EEEEEEEEC-CEEEEEEEEECcchHHH-------------HHhHHHHhcCCCEEEEEE-ECCCHHHHHHHHHHH
Confidence 000111111 12256789999996442 456778899999655554 44433222222 2
Q ss_pred HHHHHhCCCCCceEEEeccCCccCCCccHHHHHhCcccccCCCeeEEEeCChhhhcccc
Q 012559 194 KLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNV 252 (461)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (461)
..++.+...+.+.++|.||+|+........+............|+.+...+..++.+.+
T Consensus 96 ~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 154 (161)
T cd04113 96 SDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAF 154 (161)
T ss_pred HHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 23333444578999999999997543211111111111223456666665555544433
No 69
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.35 E-value=5.8e-12 Score=111.56 Aligned_cols=73 Identities=22% Similarity=0.292 Sum_probs=45.6
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhc--CCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccC
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE--KPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKL 213 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~--~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~ 213 (461)
.++.+|||||+..... .... ..+...|+. +.++ +++|+++.... ....+..++...+.+.++|+||+
T Consensus 43 ~~~~liDtpG~~~~~~----~~~~---~~~~~~~~~~~~~d~-vi~v~d~~~~~---~~~~~~~~~~~~~~~~iiv~NK~ 111 (158)
T cd01879 43 KEIEIVDLPGTYSLSP----YSED---EKVARDFLLGEKPDL-IVNVVDATNLE---RNLYLTLQLLELGLPVVVALNMI 111 (158)
T ss_pred eEEEEEECCCccccCC----CChh---HHHHHHHhcCCCCcE-EEEEeeCCcch---hHHHHHHHHHHcCCCEEEEEehh
Confidence 5789999999876431 1111 345566665 7785 45555655321 12234444444578999999999
Q ss_pred CccCCC
Q 012559 214 DLMDKG 219 (461)
Q Consensus 214 D~~~~~ 219 (461)
|+.+..
T Consensus 112 Dl~~~~ 117 (158)
T cd01879 112 DEAEKR 117 (158)
T ss_pred hhcccc
Confidence 997543
No 70
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.34 E-value=7.9e-12 Score=112.39 Aligned_cols=115 Identities=16% Similarity=0.273 Sum_probs=68.8
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhcC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 116 (461)
.|+|+|.++||||||+++|++..+.+.....++....
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~------------------------------------------- 38 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFL------------------------------------------- 38 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEE-------------------------------------------
Confidence 6899999999999999999998762221111110000
Q ss_pred CCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHH--
Q 012559 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK-- 194 (461)
Q Consensus 117 ~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~-- 194 (461)
...+.+. .....+.++|+||.... ..+...|+++++++|+++ +++...+-.....
T Consensus 39 --------~~~~~~~-~~~~~~~~~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~-d~~~~~~~~~~~~~~ 95 (172)
T cd01862 39 --------TKEVTVD-DKLVTLQIWDTAGQERF-------------QSLGVAFYRGADCCVLVY-DVTNPKSFESLDSWR 95 (172)
T ss_pred --------EEEEEEC-CEEEEEEEEeCCChHHH-------------HhHHHHHhcCCCEEEEEE-ECCCHHHHHHHHHHH
Confidence 0001111 12245789999995432 456778999999755555 4443222121111
Q ss_pred --HHHHhC---CCCCceEEEeccCCccC
Q 012559 195 --LAREVD---PTGERTFGVLTKLDLMD 217 (461)
Q Consensus 195 --l~~~~d---~~~~rti~VltK~D~~~ 217 (461)
+..... +.+.|+++|+||+|+..
T Consensus 96 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 96 DEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred HHHHHhcCccCCCCceEEEEEECccccc
Confidence 233333 34789999999999984
No 71
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.34 E-value=1.1e-11 Score=110.35 Aligned_cols=70 Identities=17% Similarity=0.243 Sum_probs=44.2
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH---HHHHHHH---hCCCCCceEE
Q 012559 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD---AIKLARE---VDPTGERTFG 208 (461)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~---~l~l~~~---~d~~~~rti~ 208 (461)
...+.++||||..+. ..+...|+.+++++|+ |.+++....... .+..+.. +...+.|+++
T Consensus 44 ~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~-v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ii 109 (162)
T cd04157 44 NLSFTAFDMSGQGKY-------------RGLWEHYYKNIQGIIF-VIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILF 109 (162)
T ss_pred CEEEEEEECCCCHhh-------------HHHHHHHHccCCEEEE-EEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEE
Confidence 356889999996543 5567789999996554 555543222111 1211111 1234789999
Q ss_pred EeccCCccCC
Q 012559 209 VLTKLDLMDK 218 (461)
Q Consensus 209 VltK~D~~~~ 218 (461)
|+||+|+.+.
T Consensus 110 v~NK~Dl~~~ 119 (162)
T cd04157 110 FANKMDLPDA 119 (162)
T ss_pred EEeCccccCC
Confidence 9999999754
No 72
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.34 E-value=8.4e-12 Score=111.49 Aligned_cols=150 Identities=14% Similarity=0.164 Sum_probs=82.2
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhcC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 116 (461)
.|+|+|.+++|||||++++++..+.+.. .|+
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~------~~t------------------------------------------- 32 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKY------LPT------------------------------------------- 32 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCC------CCc-------------------------------------------
Confidence 6899999999999999999998862211 111
Q ss_pred CCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccH---HHH
Q 012559 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DAI 193 (461)
Q Consensus 117 ~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~---~~l 193 (461)
.+++.....+.+. .....+.++||||.... ..+...|+++++++|+++ +.+...+.+ .++
T Consensus 33 --~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~-D~~~~~s~~~~~~~~ 95 (168)
T cd04119 33 --IGIDYGVKKVSVR-NKEVRVNFFDLSGHPEY-------------LEVRNEFYKDTQGVLLVY-DVTDRQSFEALDSWL 95 (168)
T ss_pred --cceeEEEEEEEEC-CeEEEEEEEECCccHHH-------------HHHHHHHhccCCEEEEEE-ECCCHHHHHhHHHHH
Confidence 0000001111121 12357889999996432 456677889999766554 444322222 222
Q ss_pred HHHHH-hCC----CCCceEEEeccCCccCCCc-cHHHHHhCcccccCCCeeEEEeCChhhhccccc
Q 012559 194 KLARE-VDP----TGERTFGVLTKLDLMDKGT-NALEVLEGRSYRLQHPWVGIVNRSQADINKNVD 253 (461)
Q Consensus 194 ~l~~~-~d~----~~~rti~VltK~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (461)
..+.. ..+ .+.|.++|.||+|+.++.. ...+... .....+..|+.+...+..++.+.+.
T Consensus 96 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 96 KEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRL-WAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred HHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHH-HHHHcCCeEEEEECCCCCCHHHHHH
Confidence 22222 222 4688999999999974321 1111110 0111224466666665555444333
No 73
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.34 E-value=1.2e-11 Score=110.59 Aligned_cols=69 Identities=22% Similarity=0.241 Sum_probs=44.5
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHH----HHHHhCCCCCceEEEec
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK----LAREVDPTGERTFGVLT 211 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~----l~~~~d~~~~rti~Vlt 211 (461)
..+.++||||.... ..+...|+++.+++++++. .....+-+...+ +.+.....+.|.++|.|
T Consensus 49 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~d-~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 114 (164)
T cd04175 49 CMLEILDTAGTEQF-------------TAMRDLYMKNGQGFVLVYS-ITAQSTFNDLQDLREQILRVKDTEDVPMILVGN 114 (164)
T ss_pred EEEEEEECCCcccc-------------hhHHHHHHhhCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 56789999997553 5567779999997666554 332222222222 22222345689999999
Q ss_pred cCCccCC
Q 012559 212 KLDLMDK 218 (461)
Q Consensus 212 K~D~~~~ 218 (461)
|+|+...
T Consensus 115 K~Dl~~~ 121 (164)
T cd04175 115 KCDLEDE 121 (164)
T ss_pred CCcchhc
Confidence 9999753
No 74
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.34 E-value=2.5e-11 Score=118.09 Aligned_cols=140 Identities=18% Similarity=0.280 Sum_probs=85.4
Q ss_pred HHHHHHHHHHhccCCCCCCccCCCCCEEEEECCCCCCHHHHHHHhhCCCCCccCC-CccccccEEEEEeecCCCCcchhh
Q 012559 11 INKIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHQTEGGTDYAEF 89 (461)
Q Consensus 11 ~~~lq~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~-~~~Tr~p~~i~l~~~~~~~~~~~~ 89 (461)
..+|++++..+.+.. .+..+|+|+|.+|+||||++|+|+|.+....+. ..+|..++...
T Consensus 21 q~~l~~~l~~l~~~~-------~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~------------- 80 (313)
T TIGR00991 21 QTKLLELLGKLKEED-------VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVS------------- 80 (313)
T ss_pred HHHHHHHHHhccccc-------ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEE-------------
Confidence 445666666555432 477999999999999999999999987632221 11222221100
Q ss_pred hcCCCCcccChHHHHHHHHHHhhhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHH
Q 012559 90 LHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSY 169 (461)
Q Consensus 90 ~~~~~~~~~d~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~y 169 (461)
. ..+...+++|||||+.+. ....+...+.++.|
T Consensus 81 ----------------------------------------~-~~~G~~l~VIDTPGL~d~------~~~~e~~~~~ik~~ 113 (313)
T TIGR00991 81 ----------------------------------------R-TRAGFTLNIIDTPGLIEG------GYINDQAVNIIKRF 113 (313)
T ss_pred ----------------------------------------E-EECCeEEEEEECCCCCch------HHHHHHHHHHHHHH
Confidence 0 012367899999999874 33444456667777
Q ss_pred hc--CCCeEEEEEecCCC-ccc--cHHHHHHHHHhC--CCCCceEEEeccCCccCC
Q 012559 170 VE--KPSCIILAISPANQ-DIA--TSDAIKLAREVD--PTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 170 i~--~~~~iIL~V~~a~~-d~~--~~~~l~l~~~~d--~~~~rti~VltK~D~~~~ 218 (461)
+. .+| ++|+|...+. .+. ....++.++.+- ..-.++|+|+|+.|..++
T Consensus 114 l~~~g~D-vVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 114 LLGKTID-VLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred hhcCCCC-EEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence 75 356 5666644321 222 233344444431 223689999999998854
No 75
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.34 E-value=1.9e-11 Score=111.92 Aligned_cols=116 Identities=20% Similarity=0.291 Sum_probs=70.6
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 115 (461)
-.|+++|.++||||||++++++..+... .|+ .
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~~~-------~~t-----------------------------------------~ 35 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFVNT-------VPT-----------------------------------------K 35 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcCCc-------CCc-----------------------------------------c
Confidence 3699999999999999999998765211 121 0
Q ss_pred CCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHH-
Q 012559 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK- 194 (461)
Q Consensus 116 g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~- 194 (461)
| +....+.+.+.......+.++||||..+. ..+...|+.+++.++ +|.++...-....+..
T Consensus 36 ~----~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii-~v~D~~~~~~~~~~~~~ 97 (183)
T cd04152 36 G----FNTEKIKVSLGNSKGITFHFWDVGGQEKL-------------RPLWKSYTRCTDGIV-FVVDSVDVERMEEAKTE 97 (183)
T ss_pred c----cceeEEEeeccCCCceEEEEEECCCcHhH-------------HHHHHHHhccCCEEE-EEEECCCHHHHHHHHHH
Confidence 0 11111122222223467899999996432 456778899999655 4555543211222221
Q ss_pred ---HHHHhCCCCCceEEEeccCCccC
Q 012559 195 ---LAREVDPTGERTFGVLTKLDLMD 217 (461)
Q Consensus 195 ---l~~~~d~~~~rti~VltK~D~~~ 217 (461)
+.+.....+.|+++|+||+|+..
T Consensus 98 ~~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 98 LHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred HHHHHhhhhcCCCcEEEEEECcCccc
Confidence 22222335789999999999864
No 76
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.33 E-value=9.3e-12 Score=112.95 Aligned_cols=69 Identities=20% Similarity=0.173 Sum_probs=45.7
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccC
Q 012559 134 NVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKL 213 (461)
Q Consensus 134 ~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~ 213 (461)
....+.|+||||..+. ..++..|+..+|++|+ |.+++.....++. .....+...+.+.++|+||+
T Consensus 65 ~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~ad~~i~-v~D~~~~~~~~~~-~~~~~~~~~~~~iiiv~NK~ 129 (179)
T cd01890 65 QEYLLNLIDTPGHVDF-------------SYEVSRSLAACEGALL-LVDATQGVEAQTL-ANFYLALENNLEIIPVINKI 129 (179)
T ss_pred CcEEEEEEECCCChhh-------------HHHHHHHHHhcCeEEE-EEECCCCccHhhH-HHHHHHHHcCCCEEEEEECC
Confidence 3456889999998653 4567788999996555 5555544332222 22223333578999999999
Q ss_pred CccC
Q 012559 214 DLMD 217 (461)
Q Consensus 214 D~~~ 217 (461)
|+.+
T Consensus 130 Dl~~ 133 (179)
T cd01890 130 DLPS 133 (179)
T ss_pred CCCc
Confidence 9864
No 77
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.33 E-value=1.8e-11 Score=108.60 Aligned_cols=148 Identities=15% Similarity=0.189 Sum_probs=81.0
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 115 (461)
.+|+++|.+|+|||||++++++..|.... ..++ ..
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~-~~t~-~~------------------------------------------- 36 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEY-DPTI-ED------------------------------------------- 36 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCc-CCcc-hh-------------------------------------------
Confidence 46999999999999999999998762211 1100 00
Q ss_pred CCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHH---
Q 012559 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA--- 192 (461)
Q Consensus 116 g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~--- 192 (461)
.+ ...+.+. .....+.++||||..+. ..+...|+.+++++++++...+. .+-...
T Consensus 37 ----~~---~~~~~~~-~~~~~~~i~Dt~G~~~~-------------~~l~~~~~~~~~~~i~v~~~~~~-~s~~~~~~~ 94 (162)
T cd04138 37 ----SY---RKQVVID-GETCLLDILDTAGQEEY-------------SAMRDQYMRTGEGFLCVFAINSR-KSFEDIHTY 94 (162)
T ss_pred ----eE---EEEEEEC-CEEEEEEEEECCCCcch-------------HHHHHHHHhcCCEEEEEEECCCH-HHHHHHHHH
Confidence 00 0001111 12245778999996543 56777899999976655443321 111111
Q ss_pred H-HHHHHhCCCCCceEEEeccCCccCCCccHHHHHhCcccccCCCeeEEEeCChhhhccc
Q 012559 193 I-KLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKN 251 (461)
Q Consensus 193 l-~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~ 251 (461)
. .+.+.....+.|.++|.||+|+........+... .....+..|+.+...+..++++.
T Consensus 95 ~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gi~~l 153 (162)
T cd04138 95 REQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQD-LAKSYGIPYIETSAKTRQGVEEA 153 (162)
T ss_pred HHHHHHhcCCCCCCEEEEEECcccccceecHHHHHH-HHHHhCCeEEEecCCCCCCHHHH
Confidence 1 2223333457899999999999754322111111 11122334555555555554443
No 78
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.33 E-value=8.5e-12 Score=113.41 Aligned_cols=104 Identities=13% Similarity=0.176 Sum_probs=55.9
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHh---C-CCCCceEEEec
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREV---D-PTGERTFGVLT 211 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~---d-~~~~rti~Vlt 211 (461)
..+.|+||||..+ ...+...|+++++++| +|.+++...+-.....+...+ . ..+.++++|.|
T Consensus 63 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~n 128 (180)
T cd04127 63 IHLQLWDTAGQER-------------FRSLTTAFFRDAMGFL-LIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGN 128 (180)
T ss_pred EEEEEEeCCChHH-------------HHHHHHHHhCCCCEEE-EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEe
Confidence 4578999999433 2567888999999655 455554322222222233222 1 23578999999
Q ss_pred cCCccCCCccHHHHHhCcccccCCCeeEEEeCChhhhccccc
Q 012559 212 KLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVD 253 (461)
Q Consensus 212 K~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 253 (461)
|+|+.+......+.........+..|+.+...+..++++.+.
T Consensus 129 K~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~ 170 (180)
T cd04127 129 KADLEDQRQVSEEQAKALADKYGIPYFETSAATGTNVEKAVE 170 (180)
T ss_pred CccchhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 999975422111111101112234566665555554444433
No 79
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.33 E-value=1e-11 Score=110.57 Aligned_cols=70 Identities=21% Similarity=0.288 Sum_probs=43.5
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhC--CCCCceEEEeccC
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVD--PTGERTFGVLTKL 213 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d--~~~~rti~VltK~ 213 (461)
..+.|+||||..+. ..+...|+++++.+++++ ++.....-.....+...+. ..+.|.++|+||+
T Consensus 51 ~~~~i~D~~G~~~~-------------~~~~~~~~~~~~~~v~v~-d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~ 116 (162)
T cd04106 51 VRLMLWDTAGQEEF-------------DAITKAYYRGAQACILVF-STTDRESFEAIESWKEKVEAECGDIPMVLVQTKI 116 (162)
T ss_pred EEEEEeeCCchHHH-------------HHhHHHHhcCCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECh
Confidence 56889999995332 566788999999655554 4432222222222222221 2368999999999
Q ss_pred CccCCC
Q 012559 214 DLMDKG 219 (461)
Q Consensus 214 D~~~~~ 219 (461)
|+..+.
T Consensus 117 Dl~~~~ 122 (162)
T cd04106 117 DLLDQA 122 (162)
T ss_pred hccccc
Confidence 997543
No 80
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.32 E-value=1e-11 Score=113.21 Aligned_cols=69 Identities=19% Similarity=0.225 Sum_probs=46.2
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCC
Q 012559 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (461)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 214 (461)
...++||||||..+. ......++..+|++++ |+++....... ...+...+...+.+.++|+||+|
T Consensus 61 ~~~~~liDtpG~~~~-------------~~~~~~~~~~~d~~i~-v~d~~~~~~~~-~~~~~~~~~~~~~~i~iv~nK~D 125 (189)
T cd00881 61 DRRVNFIDTPGHEDF-------------SSEVIRGLSVSDGAIL-VVDANEGVQPQ-TREHLRIAREGGLPIIVAINKID 125 (189)
T ss_pred CEEEEEEeCCCcHHH-------------HHHHHHHHHhcCEEEE-EEECCCCCcHH-HHHHHHHHHHCCCCeEEEEECCC
Confidence 467999999997643 4557778889996555 55555433222 22233333335789999999999
Q ss_pred ccCC
Q 012559 215 LMDK 218 (461)
Q Consensus 215 ~~~~ 218 (461)
+..+
T Consensus 126 ~~~~ 129 (189)
T cd00881 126 RVGE 129 (189)
T ss_pred Ccch
Confidence 9863
No 81
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.32 E-value=1.5e-11 Score=109.47 Aligned_cols=150 Identities=19% Similarity=0.226 Sum_probs=82.3
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhcC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 116 (461)
.|+++|.+|||||||++++++..+ +.+....+....
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~-~~~~~~~~~~~~------------------------------------------- 37 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEF-VEDYEPTKADSY------------------------------------------- 37 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-ccccCCcchhhE-------------------------------------------
Confidence 589999999999999999998865 222111111000
Q ss_pred CCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCc-cc-cHHHH-
Q 012559 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IA-TSDAI- 193 (461)
Q Consensus 117 ~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d-~~-~~~~l- 193 (461)
-...........+.++||||.... ..+...+++..+++++++...+.+ +. .....
T Consensus 38 ---------~~~~~~~~~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~ 95 (164)
T cd04139 38 ---------RKKVVLDGEDVQLNILDTAGQEDY-------------AAIRDNYHRSGEGFLLVFSITDMESFTATAEFRE 95 (164)
T ss_pred ---------EEEEEECCEEEEEEEEECCChhhh-------------hHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHH
Confidence 000011112246889999996543 456677889999766665432211 00 11222
Q ss_pred HHHHHhCCCCCceEEEeccCCccCCCccHHHHHhCcccccCCCeeEEEeCChhhhcccc
Q 012559 194 KLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNV 252 (461)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (461)
.+.+.......|.++|+||+|+.+................+.+++.+......++++..
T Consensus 96 ~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 154 (164)
T cd04139 96 QILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAF 154 (164)
T ss_pred HHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHH
Confidence 23333234579999999999998632111111110111233456666665555544433
No 82
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.32 E-value=4.8e-12 Score=114.19 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=19.3
Q ss_pred EECCCCCCHHHHHHHhhCCCC
Q 012559 40 VVGGQSSGKSSVLESVVGRDF 60 (461)
Q Consensus 40 VvG~~ssGKSSllnal~G~~~ 60 (461)
++|.+|||||||+|+|+|.++
T Consensus 1 iiG~~~~GKStll~~l~~~~~ 21 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP 21 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc
Confidence 589999999999999999865
No 83
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.32 E-value=1e-11 Score=116.67 Aligned_cols=154 Identities=15% Similarity=0.149 Sum_probs=82.9
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhcC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 116 (461)
.|+++|++|+|||||++++++..| +... .|+ .|
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~-~~~~-----~~T-----------------------------------------~~ 34 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGF-GKSY-----KQT-----------------------------------------IG 34 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC-CCCC-----CCc-----------------------------------------ee
Confidence 589999999999999999998875 2211 111 00
Q ss_pred CCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH---HH
Q 012559 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD---AI 193 (461)
Q Consensus 117 ~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~---~l 193 (461)
+......+.+.+.....+.|+||||.... ..+...|+.++|++|+++ +.+..-+-.. +.
T Consensus 35 ----~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~-------------~~l~~~~~~~ad~iilV~-D~t~~~s~~~~~~w~ 96 (215)
T cd04109 35 ----LDFFSKRVTLPGNLNVTLQVWDIGGQSIG-------------GKMLDKYIYGAHAVFLVY-DVTNSQSFENLEDWY 96 (215)
T ss_pred ----EEEEEEEEEeCCCCEEEEEEEECCCcHHH-------------HHHHHHHhhcCCEEEEEE-ECCCHHHHHHHHHHH
Confidence 00000111122212356889999995432 567788999999755554 4443212222 22
Q ss_pred HHHHHhCC---CCCceEEEeccCCccCCCccHHHHHhCcccccCCCeeEEEeCChhhhcccccHH
Q 012559 194 KLAREVDP---TGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMI 255 (461)
Q Consensus 194 ~l~~~~d~---~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (461)
..++...+ ...+.++|.||+|+.++.....+.........+.+++.+...++.++++.+..+
T Consensus 97 ~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l 161 (215)
T cd04109 97 SMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQL 161 (215)
T ss_pred HHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 33333322 235688999999997433211111111111223456666555555544444433
No 84
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.32 E-value=1.5e-11 Score=109.32 Aligned_cols=111 Identities=19% Similarity=0.293 Sum_probs=68.8
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhcC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 116 (461)
+|+++|.+++|||||++++++..+. . ..|+ .|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~-~------~~~t-----------------------------------------~~ 32 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV-T------TIPT-----------------------------------------VG 32 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc-c------ccCc-----------------------------------------cC
Confidence 5899999999999999999998751 1 1121 01
Q ss_pred CCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHH
Q 012559 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLA 196 (461)
Q Consensus 117 ~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~ 196 (461)
+.... +..+....+.++||||.... ..+...|+.+++.+| +|.|+.....-.......
T Consensus 33 ----~~~~~----~~~~~~~~l~i~D~~G~~~~-------------~~~~~~~~~~~~~iv-~v~D~~~~~~~~~~~~~~ 90 (160)
T cd04156 33 ----FNVEM----LQLEKHLSLTVWDVGGQEKM-------------RTVWKCYLENTDGLV-YVVDSSDEARLDESQKEL 90 (160)
T ss_pred ----cceEE----EEeCCceEEEEEECCCCHhH-------------HHHHHHHhccCCEEE-EEEECCcHHHHHHHHHHH
Confidence 00001 11123467899999996542 456677889999655 555554332222222222
Q ss_pred HHh----CCCCCceEEEeccCCccC
Q 012559 197 REV----DPTGERTFGVLTKLDLMD 217 (461)
Q Consensus 197 ~~~----d~~~~rti~VltK~D~~~ 217 (461)
.++ ...+.|+++|+||+|+.+
T Consensus 91 ~~~~~~~~~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 91 KHILKNEHIKGVPVVLLANKQDLPG 115 (160)
T ss_pred HHHHhchhhcCCCEEEEEECccccc
Confidence 221 124689999999999864
No 85
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.32 E-value=1.3e-11 Score=114.33 Aligned_cols=121 Identities=26% Similarity=0.311 Sum_probs=69.5
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 115 (461)
..|+++|.+|+|||||+|+|+|..+ |......+.. . . .+
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~-~~~~~~~~~~-~--~---------------------------------~t---- 40 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGH-EEEGAAPTGV-V--E---------------------------------TT---- 40 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCC-CCCCccccCc-c--c---------------------------------cc----
Confidence 4699999999999999999999764 2211111110 0 0 00
Q ss_pred CCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHH
Q 012559 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (461)
Q Consensus 116 g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 195 (461)
... ..+..+..++++++||||+.... ....+.++. ..+.+.|. +++|.+. ++...+. .+
T Consensus 41 -------~~~--~~~~~~~~~~l~l~DtpG~~~~~-----~~~~~~l~~---~~~~~~d~-~l~v~~~--~~~~~d~-~~ 99 (197)
T cd04104 41 -------MKR--TPYPHPKFPNVTLWDLPGIGSTA-----FPPDDYLEE---MKFSEYDF-FIIISST--RFSSNDV-KL 99 (197)
T ss_pred -------cCc--eeeecCCCCCceEEeCCCCCccc-----CCHHHHHHH---hCccCcCE-EEEEeCC--CCCHHHH-HH
Confidence 000 00122334689999999987642 112221121 12455674 4455443 3444433 35
Q ss_pred HHHhCCCCCceEEEeccCCccCC
Q 012559 196 AREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 196 ~~~~d~~~~rti~VltK~D~~~~ 218 (461)
++.+...+.++++|+||+|+..+
T Consensus 100 ~~~l~~~~~~~ilV~nK~D~~~~ 122 (197)
T cd04104 100 AKAIQCMGKKFYFVRTKVDRDLS 122 (197)
T ss_pred HHHHHHhCCCEEEEEecccchhh
Confidence 55555568899999999999643
No 86
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.31 E-value=6.5e-12 Score=118.07 Aligned_cols=123 Identities=24% Similarity=0.312 Sum_probs=84.4
Q ss_pred CCCEEE-EECCCCCCHHHHHHHhhCCCCCccC-CCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHh
Q 012559 34 ALPSVA-VVGGQSSGKSSVLESVVGRDFLPRG-SGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDET 111 (461)
Q Consensus 34 ~lP~Iv-VvG~~ssGKSSllnal~G~~~lP~~-~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~ 111 (461)
.-|..+ ++|..++|||||+|||.+...-|+. -+.||+-++.
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~------------------------------------- 79 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTR------------------------------------- 79 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhh-------------------------------------
Confidence 456666 9999999999999999976665555 3445554431
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCC-ccccH
Q 012559 112 DRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIATS 190 (461)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~-d~~~~ 190 (461)
.. .+.+...|+|+||||+.+.. +-....+..++.|+...| ++|++.++.. ++...
T Consensus 80 ~~-----------------~~~~~~~l~lwDtPG~gdg~------~~D~~~r~~~~d~l~~~D-LvL~l~~~~draL~~d 135 (296)
T COG3596 80 LR-----------------LSYDGENLVLWDTPGLGDGK------DKDAEHRQLYRDYLPKLD-LVLWLIKADDRALGTD 135 (296)
T ss_pred HH-----------------hhccccceEEecCCCcccch------hhhHHHHHHHHHHhhhcc-EEEEeccCCCccccCC
Confidence 11 11123789999999998853 222334788999999999 7888888864 33332
Q ss_pred HHHHHHHHhCC--CCCceEEEeccCCccCCC
Q 012559 191 DAIKLAREVDP--TGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 191 ~~l~l~~~~d~--~~~rti~VltK~D~~~~~ 219 (461)
..+++.+-- .+.|+++|+|.+|...++
T Consensus 136 --~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~ 164 (296)
T COG3596 136 --EDFLRDVIILGLDKRVLFVVTQADRAEPG 164 (296)
T ss_pred --HHHHHHHHHhccCceeEEEEehhhhhccc
Confidence 234444432 238999999999998776
No 87
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.31 E-value=9.9e-12 Score=111.02 Aligned_cols=70 Identities=26% Similarity=0.308 Sum_probs=44.5
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccH---HHHHHHHHhCCCCCceEEEec
Q 012559 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DAIKLAREVDPTGERTFGVLT 211 (461)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~---~~l~l~~~~d~~~~rti~Vlt 211 (461)
...+.++||||.... ..+...++.++|+++ +|.+.+...+-. .++..+.... .+.+.++|+|
T Consensus 51 ~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii-~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~n 115 (164)
T cd04101 51 TVELFIFDSAGQELY-------------SDMVSNYWESPSVFI-LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGN 115 (164)
T ss_pred EEEEEEEECCCHHHH-------------HHHHHHHhCCCCEEE-EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEE
Confidence 357889999995332 567788999999655 444554322222 2222223333 3589999999
Q ss_pred cCCccCCC
Q 012559 212 KLDLMDKG 219 (461)
Q Consensus 212 K~D~~~~~ 219 (461)
|+|+.+..
T Consensus 116 K~Dl~~~~ 123 (164)
T cd04101 116 KMDLADKA 123 (164)
T ss_pred Cccccccc
Confidence 99997543
No 88
>COG2262 HflX GTPases [General function prediction only]
Probab=99.31 E-value=8.9e-11 Score=116.29 Aligned_cols=153 Identities=21% Similarity=0.273 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHhccCCC--CCCccCCCCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcc
Q 012559 9 GLINKIQRACTVLGDHGG--EGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDY 86 (461)
Q Consensus 9 ~~~~~lq~~~~~~~~~~~--~~~~~~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~ 86 (461)
..|++|+.-+..+..+.. .-.......|+|++||..|||||||+|+|+|...+-.+.=..|--|+
T Consensus 164 ~rI~~i~~eLe~v~~~R~~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpt------------- 230 (411)
T COG2262 164 RRIAKLKRELENVEKAREPRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPT------------- 230 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCc-------------
Confidence 345555555555432111 01111247899999999999999999999998763333323443332
Q ss_pred hhhhcCCCCcccChHHHHHHHHHHhhhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHH
Q 012559 87 AEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMV 166 (461)
Q Consensus 87 ~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v 166 (461)
+. .+.-++...+.|-||=|+++.- |..+.+.++. +
T Consensus 231 ------------------------tR----------------~~~l~~g~~vlLtDTVGFI~~L----P~~LV~AFks-T 265 (411)
T COG2262 231 ------------------------TR----------------RIELGDGRKVLLTDTVGFIRDL----PHPLVEAFKS-T 265 (411)
T ss_pred ------------------------ee----------------EEEeCCCceEEEecCccCcccC----ChHHHHHHHH-H
Confidence 00 1233345678999999999854 7777666554 3
Q ss_pred HHHhcCCCeEEEEEecCCCcccc---HHHHHHHHHhCCCCCceEEEeccCCccCCCc
Q 012559 167 RSYVEKPSCIILAISPANQDIAT---SDAIKLAREVDPTGERTFGVLTKLDLMDKGT 220 (461)
Q Consensus 167 ~~yi~~~~~iIL~V~~a~~d~~~---~~~l~l~~~~d~~~~rti~VltK~D~~~~~~ 220 (461)
..-..++| ++|.|+|++.+... +....++.++.-...|+|.|+||+|++.+..
T Consensus 266 LEE~~~aD-lllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~ 321 (411)
T COG2262 266 LEEVKEAD-LLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE 321 (411)
T ss_pred HHHhhcCC-EEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh
Confidence 34556778 56677777654222 3345678888777899999999999986653
No 89
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.30 E-value=1.3e-11 Score=114.79 Aligned_cols=116 Identities=16% Similarity=0.254 Sum_probs=73.6
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhcC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 116 (461)
||+|+|+.++|||||+..++...|- .... |+ .|
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~-~~~~-----~T-----------------------------------------i~ 34 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFC-EACK-----SG-----------------------------------------VG 34 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCC-CcCC-----Cc-----------------------------------------ce
Confidence 7999999999999999999987762 1110 10 00
Q ss_pred CCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccH---HHH
Q 012559 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DAI 193 (461)
Q Consensus 117 ~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~---~~l 193 (461)
..|..+ .+.+. .....+.++||||..+. ..+...|+++++++|+++ |.+..-+-+ .+.
T Consensus 35 --~~~~~~--~i~~~-~~~v~l~iwDtaGqe~~-------------~~l~~~y~~~ad~iIlVf-Dvtd~~Sf~~l~~w~ 95 (202)
T cd04120 35 --VDFKIK--TVELR-GKKIRLQIWDTAGQERF-------------NSITSAYYRSAKGIILVY-DITKKETFDDLPKWM 95 (202)
T ss_pred --eEEEEE--EEEEC-CEEEEEEEEeCCCchhh-------------HHHHHHHhcCCCEEEEEE-ECcCHHHHHHHHHHH
Confidence 011111 11121 12367899999996553 667889999999766554 444322222 233
Q ss_pred HHHHHhCCCCCceEEEeccCCccCC
Q 012559 194 KLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
..++.....+.++++|.||+|+.+.
T Consensus 96 ~~i~~~~~~~~piilVgNK~DL~~~ 120 (202)
T cd04120 96 KMIDKYASEDAELLLVGNKLDCETD 120 (202)
T ss_pred HHHHHhCCCCCcEEEEEECcccccc
Confidence 4445555567899999999998643
No 90
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.30 E-value=1.8e-11 Score=113.67 Aligned_cols=68 Identities=19% Similarity=0.259 Sum_probs=43.3
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHh-------CCCCCceEE
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREV-------DPTGERTFG 208 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~-------d~~~~rti~ 208 (461)
..+.|+||||.... ..+...|+++++++|+++ +.+...+-..+..+..++ .....|+++
T Consensus 50 ~~l~l~Dt~G~~~~-------------~~~~~~~~~~a~~~ilv~-D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piil 115 (201)
T cd04107 50 VRLQLWDIAGQERF-------------GGMTRVYYRGAVGAIIVF-DVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLL 115 (201)
T ss_pred EEEEEEECCCchhh-------------hhhHHHHhCCCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEE
Confidence 56889999996442 567788999999755554 444322222222222221 124579999
Q ss_pred EeccCCccC
Q 012559 209 VLTKLDLMD 217 (461)
Q Consensus 209 VltK~D~~~ 217 (461)
|.||.|+.+
T Consensus 116 v~NK~Dl~~ 124 (201)
T cd04107 116 LANKCDLKK 124 (201)
T ss_pred EEECCCccc
Confidence 999999974
No 91
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.30 E-value=2.7e-11 Score=108.49 Aligned_cols=70 Identities=19% Similarity=0.194 Sum_probs=44.9
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHh----CCCCCceEEEe
Q 012559 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREV----DPTGERTFGVL 210 (461)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~----d~~~~rti~Vl 210 (461)
...+.++||||.... ..+...++..+++++++ +++...-...........+ ...+.|+++|+
T Consensus 49 ~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~~~~v~v-vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~ 114 (167)
T cd04160 49 NARLKFWDLGGQESL-------------RSLWDKYYAECHAIIYV-IDSTDRERFEESKSALEKVLRNEALEGVPLLILA 114 (167)
T ss_pred CEEEEEEECCCChhh-------------HHHHHHHhCCCCEEEEE-EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEE
Confidence 468899999997543 45677889999965554 5554322222222222222 23478999999
Q ss_pred ccCCccCC
Q 012559 211 TKLDLMDK 218 (461)
Q Consensus 211 tK~D~~~~ 218 (461)
||+|+...
T Consensus 115 NK~D~~~~ 122 (167)
T cd04160 115 NKQDLPDA 122 (167)
T ss_pred EccccccC
Confidence 99998654
No 92
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.30 E-value=3.9e-11 Score=106.82 Aligned_cols=117 Identities=18% Similarity=0.241 Sum_probs=69.6
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhcC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 116 (461)
.|+|+|.+|||||||+++|++..+.+...... +
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-----------------------------------------------~ 34 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATI-----------------------------------------------G 34 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcc-----------------------------------------------c
Confidence 58999999999999999999987522111100 0
Q ss_pred CCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHH-
Q 012559 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL- 195 (461)
Q Consensus 117 ~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l- 195 (461)
.+.....+.+ ......+.++|+||.... ..+...+++.+|+++++ .+++...+-+....+
T Consensus 35 ----~~~~~~~~~~-~~~~~~~~l~D~~g~~~~-------------~~~~~~~~~~~d~~i~v-~d~~~~~s~~~~~~~~ 95 (161)
T cd01863 35 ----VDFKVKTLTV-DGKKVKLAIWDTAGQERF-------------RTLTSSYYRGAQGVILV-YDVTRRDTFTNLETWL 95 (161)
T ss_pred ----ceEEEEEEEE-CCEEEEEEEEECCCchhh-------------hhhhHHHhCCCCEEEEE-EECCCHHHHHhHHHHH
Confidence 0000111111 122356889999996442 44567788889965544 445432222222222
Q ss_pred --HHH-hCCCCCceEEEeccCCccCCC
Q 012559 196 --ARE-VDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 196 --~~~-~d~~~~rti~VltK~D~~~~~ 219 (461)
++. ....+.+.++|+||+|+....
T Consensus 96 ~~i~~~~~~~~~~~~iv~nK~D~~~~~ 122 (161)
T cd01863 96 NELETYSTNNDIVKMLVGNKIDKENRE 122 (161)
T ss_pred HHHHHhCCCCCCcEEEEEECCcccccc
Confidence 222 234578899999999997443
No 93
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.30 E-value=2.4e-11 Score=111.80 Aligned_cols=110 Identities=11% Similarity=0.108 Sum_probs=59.1
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccH---HHHHHHHHhC---CCCCceEEE
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DAIKLAREVD---PTGERTFGV 209 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~---~~l~l~~~~d---~~~~rti~V 209 (461)
..+.|+||||..+. ..+...|++.+|++|+++ +.+...+-. .++..+.... +.+.|+|+|
T Consensus 47 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~ad~~ilv~-d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv 112 (190)
T cd04144 47 CMLEVLDTAGQEEY-------------TALRDQWIREGEGFILVY-SITSRSTFERVERFREQIQRVKDESAADVPIMIV 112 (190)
T ss_pred EEEEEEECCCchhh-------------HHHHHHHHHhCCEEEEEE-ECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 45889999996543 456778999999766554 443322212 2222233332 246799999
Q ss_pred eccCCccCCCccHHHHHhCcccccCCCeeEEEeCChhhhcccccHHHHHH
Q 012559 210 LTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARR 259 (461)
Q Consensus 210 ltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (461)
.||+|+.+................+..|+.+......++++.+..+....
T Consensus 113 gNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l 162 (190)
T cd04144 113 GNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRAL 162 (190)
T ss_pred EEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 99999974322111111101112233466665555555555554444333
No 94
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.30 E-value=2.8e-11 Score=107.86 Aligned_cols=115 Identities=16% Similarity=0.172 Sum_probs=68.1
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhcC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 116 (461)
.|+|+|.++||||||+|++++.++.+.. ...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~-------------------------------------------- 37 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEFSENQ-ESTIGAA-------------------------------------------- 37 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCC-CCcccee--------------------------------------------
Confidence 6899999999999999999999873311 1110000
Q ss_pred CCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHH-
Q 012559 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL- 195 (461)
Q Consensus 117 ~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l- 195 (461)
+.. ..+.+. .....+.++|+||..+. ..+...|+++.+++++++...+ .-+-..+..+
T Consensus 38 ----~~~--~~v~~~-~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~-~~s~~~~~~~~ 96 (163)
T cd01860 38 ----FLT--QTVNLD-DTTVKFEIWDTAGQERY-------------RSLAPMYYRGAAAAIVVYDITS-EESFEKAKSWV 96 (163)
T ss_pred ----EEE--EEEEEC-CEEEEEEEEeCCchHHH-------------HHHHHHHhccCCEEEEEEECcC-HHHHHHHHHHH
Confidence 000 001111 12245789999994321 4556678899997665554433 2222222222
Q ss_pred --HHHhCCCCCceEEEeccCCccC
Q 012559 196 --AREVDPTGERTFGVLTKLDLMD 217 (461)
Q Consensus 196 --~~~~d~~~~rti~VltK~D~~~ 217 (461)
++.....+.+.++|+||+|+..
T Consensus 97 ~~~~~~~~~~~~iivv~nK~D~~~ 120 (163)
T cd01860 97 KELQRNASPNIIIALVGNKADLES 120 (163)
T ss_pred HHHHHhCCCCCeEEEEEECccccc
Confidence 2333334578999999999874
No 95
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.29 E-value=4.3e-11 Score=108.28 Aligned_cols=114 Identities=19% Similarity=0.309 Sum_probs=70.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
.-++|+++|.++||||||+++|++..+ +. ..|+
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~------~~~t---------------------------------------- 45 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDI-DT------ISPT---------------------------------------- 45 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCC-CC------cCCc----------------------------------------
Confidence 458899999999999999999998743 11 1111
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
.| +.... +.+ +...+.++||||.... ..+...|+.++++++++ .++..........
T Consensus 46 -~g----~~~~~--~~~---~~~~l~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v-~d~~~~~s~~~~~ 101 (173)
T cd04154 46 -LG----FQIKT--LEY---EGYKLNIWDVGGQKTL-------------RPYWRNYFESTDALIWV-VDSSDRLRLDDCK 101 (173)
T ss_pred -cc----cceEE--EEE---CCEEEEEEECCCCHHH-------------HHHHHHHhCCCCEEEEE-EECCCHHHHHHHH
Confidence 01 11111 111 1357899999996542 55678899999965554 4554332222221
Q ss_pred HHHHH----hCCCCCceEEEeccCCccCC
Q 012559 194 KLARE----VDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 194 ~l~~~----~d~~~~rti~VltK~D~~~~ 218 (461)
..... ....+.|.++|+||+|+...
T Consensus 102 ~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 130 (173)
T cd04154 102 RELKELLQEERLAGATLLILANKQDLPGA 130 (173)
T ss_pred HHHHHHHhChhhcCCCEEEEEECcccccC
Confidence 12222 12246899999999999754
No 96
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.29 E-value=2.6e-11 Score=113.59 Aligned_cols=157 Identities=18% Similarity=0.237 Sum_probs=86.6
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 115 (461)
..|+|+|++++|||||++++++..+-+... |+ .
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~------~t-----------------------------------------i 35 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSD------PT-----------------------------------------V 35 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC------ce-----------------------------------------e
Confidence 579999999999999999999987622211 11 0
Q ss_pred CCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHH
Q 012559 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (461)
Q Consensus 116 g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 195 (461)
| ..+.. ..+.+.......+.++||||.... ..+...|++++++++++ .+.+..-+-.....+
T Consensus 36 ~--~d~~~--~~i~~~~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~iilv-~D~~~~~Sf~~l~~~ 97 (211)
T cd04111 36 G--VDFFS--RLIEIEPGVRIKLQLWDTAGQERF-------------RSITRSYYRNSVGVLLV-FDITNRESFEHVHDW 97 (211)
T ss_pred c--eEEEE--EEEEECCCCEEEEEEEeCCcchhH-------------HHHHHHHhcCCcEEEEE-EECCCHHHHHHHHHH
Confidence 0 00000 011111112246889999996442 55677899999965554 444432222222222
Q ss_pred HH----HhCCCCCceEEEeccCCccCCCccHHHHHhCcccccCCCeeEEEeCChhhhcccccHHHH
Q 012559 196 AR----EVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAA 257 (461)
Q Consensus 196 ~~----~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (461)
.. ...+...+.++|.||+|+.+......+.........+.+|+.+...+..++++.+..+..
T Consensus 98 ~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~ 163 (211)
T cd04111 98 LEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQ 163 (211)
T ss_pred HHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 22 233445667889999999764321111111111223356777766666666655554443
No 97
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.29 E-value=3e-11 Score=108.46 Aligned_cols=120 Identities=16% Similarity=0.235 Sum_probs=72.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
.++.|+++|.+++|||||++++++..+.|......+....
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~---------------------------------------- 45 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFM---------------------------------------- 45 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEE----------------------------------------
Confidence 4689999999999999999999976652221100000000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---H
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---S 190 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~---~ 190 (461)
...+.+. .....+.++|+||.... ..+...|+..++++++++ +.....+. .
T Consensus 46 -----------~~~~~~~-~~~~~~~~~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~ 99 (169)
T cd04114 46 -----------IKTVEIK-GEKIKLQIWDTAGQERF-------------RSITQSYYRSANALILTY-DITCEESFRCLP 99 (169)
T ss_pred -----------EEEEEEC-CEEEEEEEEECCCcHHH-------------HHHHHHHhcCCCEEEEEE-ECcCHHHHHHHH
Confidence 0001111 11245789999996432 455677899999755554 44432221 1
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 191 DAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
.++..++.+...+.+.++|.||+|+.++.
T Consensus 100 ~~~~~l~~~~~~~~~~i~v~NK~D~~~~~ 128 (169)
T cd04114 100 EWLREIEQYANNKVITILVGNKIDLAERR 128 (169)
T ss_pred HHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 23333455555678899999999987543
No 98
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.29 E-value=2.8e-11 Score=108.58 Aligned_cols=102 Identities=15% Similarity=0.113 Sum_probs=55.9
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccH---HHHHHHHHhC---CCCCceEEE
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DAIKLAREVD---PTGERTFGV 209 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~---~~l~l~~~~d---~~~~rti~V 209 (461)
..+.++||||.... ..+...|+..++++|++ .+.+...+-. .+...++++. ..+.|.++|
T Consensus 49 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~~~~~ilv-~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv 114 (165)
T cd04140 49 CTLQITDTTGSHQF-------------PAMQRLSISKGHAFILV-YSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLV 114 (165)
T ss_pred EEEEEEECCCCCcc-------------hHHHHHHhhcCCEEEEE-EECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEE
Confidence 56889999997654 34566788888865554 4444322222 2223334432 246899999
Q ss_pred eccCCccCCCcc-HHHHHhCcccccCCCeeEEEeCChhhhcccc
Q 012559 210 LTKLDLMDKGTN-ALEVLEGRSYRLQHPWVGIVNRSQADINKNV 252 (461)
Q Consensus 210 ltK~D~~~~~~~-~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (461)
.||+|+...... ..+... ........|+.+......++++.+
T Consensus 115 ~nK~Dl~~~~~v~~~~~~~-~~~~~~~~~~e~SA~~g~~v~~~f 157 (165)
T cd04140 115 GNKCDESHKREVSSNEGAA-CATEWNCAFMETSAKTNHNVQELF 157 (165)
T ss_pred EECccccccCeecHHHHHH-HHHHhCCcEEEeecCCCCCHHHHH
Confidence 999999753221 111110 111223456666665555544433
No 99
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.29 E-value=2.6e-11 Score=108.64 Aligned_cols=119 Identities=18% Similarity=0.220 Sum_probs=72.5
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
...|+|+|.+++|||||++++.+..+.+... .|..
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~--~t~~------------------------------------------- 37 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQG--NTIG------------------------------------------- 37 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCC--Cccc-------------------------------------------
Confidence 4789999999999999999999876522111 0100
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccH---H
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---D 191 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~---~ 191 (461)
.......+.+. .....+.|+||||... ...+...++..+|+++++ .++....+-+ .
T Consensus 38 ------~~~~~~~~~~~-~~~~~l~i~D~~G~~~-------------~~~~~~~~~~~~d~~llv-~d~~~~~s~~~~~~ 96 (165)
T cd01864 38 ------VDFTMKTLEIE-GKRVKLQIWDTAGQER-------------FRTITQSYYRSANGAIIA-YDITRRSSFESVPH 96 (165)
T ss_pred ------eEEEEEEEEEC-CEEEEEEEEECCChHH-------------HHHHHHHHhccCCEEEEE-EECcCHHHHHhHHH
Confidence 00000011111 1124688999999432 256778889999965555 4444332222 2
Q ss_pred HHHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 192 AIKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
++..++...+.+.|.++|.||+|+....
T Consensus 97 ~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 124 (165)
T cd01864 97 WIEEVEKYGASNVVLLLIGNKCDLEEQR 124 (165)
T ss_pred HHHHHHHhCCCCCcEEEEEECccccccc
Confidence 3333344445578899999999997543
No 100
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.28 E-value=1.7e-11 Score=110.78 Aligned_cols=116 Identities=22% Similarity=0.256 Sum_probs=69.8
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhcC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 116 (461)
.|++||++++|||||++++++..| +.... |+ .|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f-~~~~~-----~t-----------------------------------------~~ 34 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF-DKNYK-----AT-----------------------------------------IG 34 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCC-----Cc-----------------------------------------ee
Confidence 589999999999999999999876 22111 11 00
Q ss_pred CCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHH
Q 012559 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLA 196 (461)
Q Consensus 117 ~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~ 196 (461)
..+ ....+.+.+ ....+.|+||||..+. ..+...|++++|+ +++|.+++..-+......+.
T Consensus 35 --~~~--~~~~~~~~~-~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~ad~-~ilv~d~~~~~s~~~~~~~~ 95 (170)
T cd04108 35 --VDF--EMERFEILG-VPFSLQLWDTAGQERF-------------KCIASTYYRGAQA-IIIVFDLTDVASLEHTRQWL 95 (170)
T ss_pred --eEE--EEEEEEECC-EEEEEEEEeCCChHHH-------------HhhHHHHhcCCCE-EEEEEECcCHHHHHHHHHHH
Confidence 000 001111211 2256889999997543 5567888999996 45555554321222222223
Q ss_pred H----HhCCCCCceEEEeccCCccCC
Q 012559 197 R----EVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 197 ~----~~d~~~~rti~VltK~D~~~~ 218 (461)
. ...+...++++|.||.|+.+.
T Consensus 96 ~~~~~~~~~~~~~iilVgnK~Dl~~~ 121 (170)
T cd04108 96 EDALKENDPSSVLLFLVGTKKDLSSP 121 (170)
T ss_pred HHHHHhcCCCCCeEEEEEEChhcCcc
Confidence 2 233444568999999998654
No 101
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.28 E-value=1e-11 Score=116.52 Aligned_cols=126 Identities=25% Similarity=0.401 Sum_probs=71.9
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCC--ccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG--IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~--~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
+|+|+|..+|||||+.|+|+|.+.++.+.+ .||+.+.... ...
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~-----------------------------------~~~ 46 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYS-----------------------------------GEV 46 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEE-----------------------------------EEE
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceee-----------------------------------eee
Confidence 799999999999999999999998887642 4554443111 011
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH--H
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD--A 192 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~--~ 192 (461)
+...+++|||||+.+.... +......+...+......+++ +|+|++.. .++..+ .
T Consensus 47 -------------------~g~~v~VIDTPGl~d~~~~--~~~~~~~i~~~l~~~~~g~ha-~llVi~~~-r~t~~~~~~ 103 (212)
T PF04548_consen 47 -------------------DGRQVTVIDTPGLFDSDGS--DEEIIREIKRCLSLCSPGPHA-FLLVIPLG-RFTEEDREV 103 (212)
T ss_dssp -------------------TTEEEEEEE--SSEETTEE--HHHHHHHHHHHHHHTTT-ESE-EEEEEETT-B-SHHHHHH
T ss_pred -------------------cceEEEEEeCCCCCCCccc--HHHHHHHHHHHHHhccCCCeE-EEEEEecC-cchHHHHHH
Confidence 2267899999999775321 122222233333333445775 55667766 555433 3
Q ss_pred HHHHHHh-CC-CCCceEEEeccCCccCCCc
Q 012559 193 IKLAREV-DP-TGERTFGVLTKLDLMDKGT 220 (461)
Q Consensus 193 l~l~~~~-d~-~~~rti~VltK~D~~~~~~ 220 (461)
++.+..+ .+ .-..+|+|+|..|...+..
T Consensus 104 l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~ 133 (212)
T PF04548_consen 104 LELLQEIFGEEIWKHTIVVFTHADELEDDS 133 (212)
T ss_dssp HHHHHHHHCGGGGGGEEEEEEEGGGGTTTT
T ss_pred HHHHHHHccHHHHhHhhHHhhhcccccccc
Confidence 3333333 22 2367999999999987653
No 102
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.28 E-value=2.9e-11 Score=108.15 Aligned_cols=113 Identities=20% Similarity=0.267 Sum_probs=68.9
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhcC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 116 (461)
.|+++|.+++|||||++.+++..|-|... .|..+.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~--~~~~~~------------------------------------------- 36 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQL--STYALT------------------------------------------- 36 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcC--CceeeE-------------------------------------------
Confidence 68999999999999999999887633211 111100
Q ss_pred CCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH---HH
Q 012559 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD---AI 193 (461)
Q Consensus 117 ~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~---~l 193 (461)
+.. ..+.+ ......+.++||||.... ..+...|++++|++|++ .+++....... ++
T Consensus 37 ----~~~--~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v-~d~~~~~s~~~~~~~~ 95 (161)
T cd04124 37 ----LYK--HNAKF-EGKTILVDFWDTAGQERF-------------QTMHASYYHKAHACILV-FDVTRKITYKNLSKWY 95 (161)
T ss_pred ----EEE--EEEEE-CCEEEEEEEEeCCCchhh-------------hhhhHHHhCCCCEEEEE-EECCCHHHHHHHHHHH
Confidence 000 00011 112256789999996542 56778899999965554 45543322222 22
Q ss_pred HHHHHhCCCCCceEEEeccCCcc
Q 012559 194 KLAREVDPTGERTFGVLTKLDLM 216 (461)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~ 216 (461)
..++...+ +.|.++|+||+|+.
T Consensus 96 ~~i~~~~~-~~p~ivv~nK~Dl~ 117 (161)
T cd04124 96 EELREYRP-EIPCIVVANKIDLD 117 (161)
T ss_pred HHHHHhCC-CCcEEEEEECccCc
Confidence 33333322 58999999999985
No 103
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.28 E-value=4.7e-11 Score=105.15 Aligned_cols=113 Identities=23% Similarity=0.319 Sum_probs=68.5
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhcC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 116 (461)
.|+++|.++||||||+++|+|..+. ... . |+ .+
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~-~~~-~----~t-----------------------------------------~~ 33 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFS-EDT-I----PT-----------------------------------------VG 33 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCC-cCc-c----CC-----------------------------------------CC
Confidence 4899999999999999999998762 111 1 11 00
Q ss_pred CCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHH
Q 012559 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLA 196 (461)
Q Consensus 117 ~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~ 196 (461)
+. ... +.. +...+.++||||.... ..+...|+..++.++ +|.+++............
T Consensus 34 ----~~--~~~--~~~-~~~~~~~~D~~g~~~~-------------~~~~~~~~~~~d~ii-~v~d~~~~~~~~~~~~~~ 90 (159)
T cd04159 34 ----FN--MRK--VTK-GNVTLKVWDLGGQPRF-------------RSMWERYCRGVNAIV-YVVDAADRTALEAAKNEL 90 (159)
T ss_pred ----cc--eEE--EEE-CCEEEEEEECCCCHhH-------------HHHHHHHHhcCCEEE-EEEECCCHHHHHHHHHHH
Confidence 00 001 111 1256889999996442 556778899999655 555554322222211112
Q ss_pred HHh----CCCCCceEEEeccCCccCCC
Q 012559 197 REV----DPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 197 ~~~----d~~~~rti~VltK~D~~~~~ 219 (461)
..+ ...+.|.++|+||+|+....
T Consensus 91 ~~~~~~~~~~~~p~iiv~nK~D~~~~~ 117 (159)
T cd04159 91 HDLLEKPSLEGIPLLVLGNKNDLPGAL 117 (159)
T ss_pred HHHHcChhhcCCCEEEEEeCccccCCc
Confidence 221 12467999999999987543
No 104
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.27 E-value=4.4e-11 Score=106.40 Aligned_cols=122 Identities=22% Similarity=0.314 Sum_probs=77.3
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCcc--ccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV--TRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~--Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
.|+++|..|||||||+|+|++..+.+..++.. |+.+.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~----------------------------------------- 39 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLIN----------------------------------------- 39 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEE-----------------------------------------
Confidence 48999999999999999999655544433321 11110
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCe--EEEEEecCCCccccHHH
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSC--IILAISPANQDIATSDA 192 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~--iIL~V~~a~~d~~~~~~ 192 (461)
.+.+ ...++++||||+..... +.+..+....+...|+...+. .++++++....... ..
T Consensus 40 ------------~~~~----~~~~~~~D~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-~~ 99 (170)
T cd01876 40 ------------FFNV----NDKFRLVDLPGYGYAKV---SKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTE-ID 99 (170)
T ss_pred ------------EEEc----cCeEEEecCCCcccccc---CHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCH-hH
Confidence 0001 12789999999866432 334445567777888876532 35556666544322 22
Q ss_pred HHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 193 IKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
..+.+.+...+.++++|+||+|++.++
T Consensus 100 ~~~~~~l~~~~~~vi~v~nK~D~~~~~ 126 (170)
T cd01876 100 LEMLDWLEELGIPFLVVLTKADKLKKS 126 (170)
T ss_pred HHHHHHHHHcCCCEEEEEEchhcCChH
Confidence 335555655678999999999997654
No 105
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.27 E-value=2.6e-11 Score=112.52 Aligned_cols=157 Identities=14% Similarity=0.139 Sum_probs=86.2
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
...|+|+|++|+|||||++++.+..|-+. . .|+
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~-~-----~~t----------------------------------------- 38 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGS-Y-----ITT----------------------------------------- 38 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCC-c-----Ccc-----------------------------------------
Confidence 57899999999999999999998876110 0 111
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHH
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 194 (461)
.| ++.....+.+. .....+.|+||||.... ..+...|+.+++++|+++ +++...+-+....
T Consensus 39 ~~----~~~~~~~~~~~-~~~~~l~l~D~~G~~~~-------------~~~~~~~~~~a~~iilv~-D~~~~~s~~~~~~ 99 (199)
T cd04110 39 IG----VDFKIRTVEIN-GERVKLQIWDTAGQERF-------------RTITSTYYRGTHGVIVVY-DVTNGESFVNVKR 99 (199)
T ss_pred cc----ceeEEEEEEEC-CEEEEEEEEeCCCchhH-------------HHHHHHHhCCCcEEEEEE-ECCCHHHHHHHHH
Confidence 00 00001111111 12246889999995442 566788999999655554 4443222222222
Q ss_pred HHHHhC--CCCCceEEEeccCCccCCCccHHHHHhCcccccCCCeeEEEeCChhhhcccccHHHH
Q 012559 195 LAREVD--PTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAA 257 (461)
Q Consensus 195 l~~~~d--~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (461)
+...+. ....+.++|.||+|+.....................|+.+......++.+.+..+..
T Consensus 100 ~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~ 164 (199)
T cd04110 100 WLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITE 164 (199)
T ss_pred HHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHH
Confidence 333221 235788999999998754321111111011122345666666665555555544433
No 106
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.26 E-value=5.4e-11 Score=105.54 Aligned_cols=69 Identities=16% Similarity=0.163 Sum_probs=43.0
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH---HHHHHhCCCCCceEEEecc
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI---KLAREVDPTGERTFGVLTK 212 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l---~l~~~~d~~~~rti~VltK 212 (461)
..+.++|+||.... ..+...|+.+++++++++ +.+..-..+... ..++...+.+.++++|+||
T Consensus 49 ~~~~~~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~-d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK 114 (162)
T cd04123 49 IDLAIWDTAGQERY-------------HALGPIYYRDADGAILVY-DITDADSFQKVKKWIKELKQMRGNNISLVIVGNK 114 (162)
T ss_pred EEEEEEECCchHHH-------------HHhhHHHhccCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 46889999995332 455667788888655544 444322222222 2233344446899999999
Q ss_pred CCccCC
Q 012559 213 LDLMDK 218 (461)
Q Consensus 213 ~D~~~~ 218 (461)
+|+...
T Consensus 115 ~D~~~~ 120 (162)
T cd04123 115 IDLERQ 120 (162)
T ss_pred cccccc
Confidence 998743
No 107
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.26 E-value=2.8e-11 Score=108.09 Aligned_cols=115 Identities=18% Similarity=0.219 Sum_probs=68.3
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhcC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 116 (461)
+|+++|.+++|||||++++.+..+.+.-... ..
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t-~~---------------------------------------------- 35 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSGTFIEKYDPT-IE---------------------------------------------- 35 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCc-hh----------------------------------------------
Confidence 6999999999999999999988763221110 00
Q ss_pred CCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHH-
Q 012559 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL- 195 (461)
Q Consensus 117 ~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l- 195 (461)
.+.. ..+.+.+ ....+.|+||||..+. ..+...|+.+++++++++ +....-+-.+...+
T Consensus 36 ---~~~~--~~~~~~~-~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~ad~~i~v~-d~~~~~s~~~~~~~~ 95 (163)
T cd04176 36 ---DFYR--KEIEVDS-SPSVLEILDTAGTEQF-------------ASMRDLYIKNGQGFIVVY-SLVNQQTFQDIKPMR 95 (163)
T ss_pred ---heEE--EEEEECC-EEEEEEEEECCCcccc-------------cchHHHHHhhCCEEEEEE-ECCCHHHHHHHHHHH
Confidence 0000 0111111 1235789999996553 345667889999766554 44322221222222
Q ss_pred --HHHh-CCCCCceEEEeccCCccCC
Q 012559 196 --AREV-DPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 196 --~~~~-d~~~~rti~VltK~D~~~~ 218 (461)
+.+. ...+.|+++|.||+|+...
T Consensus 96 ~~~~~~~~~~~~piviv~nK~Dl~~~ 121 (163)
T cd04176 96 DQIVRVKGYEKVPIILVGNKVDLESE 121 (163)
T ss_pred HHHHHhcCCCCCCEEEEEECccchhc
Confidence 2222 3357899999999998643
No 108
>PLN03118 Rab family protein; Provisional
Probab=99.26 E-value=6.3e-11 Score=110.93 Aligned_cols=159 Identities=17% Similarity=0.178 Sum_probs=88.1
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
..+|+|||.+++|||||+++|++..+ +.. . |+
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~-~~~-~-----~t----------------------------------------- 45 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSV-EDL-A-----PT----------------------------------------- 45 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC-CCc-C-----CC-----------------------------------------
Confidence 46899999999999999999998765 111 0 10
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH---
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD--- 191 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~--- 191 (461)
.| +......+.+. .....+.|+||||.... ..+...|+++++++|+++...+.+ +-..
T Consensus 46 ~~----~~~~~~~~~~~-~~~~~l~l~Dt~G~~~~-------------~~~~~~~~~~~d~~vlv~D~~~~~-sf~~~~~ 106 (211)
T PLN03118 46 IG----VDFKIKQLTVG-GKRLKLTIWDTAGQERF-------------RTLTSSYYRNAQGIILVYDVTRRE-TFTNLSD 106 (211)
T ss_pred ce----eEEEEEEEEEC-CEEEEEEEEECCCchhh-------------HHHHHHHHhcCCEEEEEEECCCHH-HHHHHHH
Confidence 00 00011111111 12246889999996553 456778999999766555443321 1111
Q ss_pred -HHHHHHHhC-CCCCceEEEeccCCccCCCcc-HHHHHhCcccccCCCeeEEEeCChhhhcccccHHHHHHHH
Q 012559 192 -AIKLAREVD-PTGERTFGVLTKLDLMDKGTN-ALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARRKE 261 (461)
Q Consensus 192 -~l~l~~~~d-~~~~rti~VltK~D~~~~~~~-~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~E 261 (461)
+........ ..+.+.++|.||+|+...... ..+... .....+..|+.+...+..++++.+..+.....+
T Consensus 107 ~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~-~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 107 VWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMA-LAKEHGCLFLECSAKTRENVEQCFEELALKIME 178 (211)
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHH-HHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 112222222 235688999999999754321 111111 111223446666666666666666555544433
No 109
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.26 E-value=6e-11 Score=105.53 Aligned_cols=69 Identities=17% Similarity=0.248 Sum_probs=43.9
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccH----HHHHHHHHhCCCCCceEEEec
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS----DAIKLAREVDPTGERTFGVLT 211 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~----~~l~l~~~~d~~~~rti~Vlt 211 (461)
..+.++||||..+. ..+...|+..++++|+++ ++....... ....+.+.....+.|+++|+|
T Consensus 43 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~ii~v~-d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~n 108 (158)
T cd04151 43 LKFQVWDLGGQTSI-------------RPYWRCYYSNTDAIIYVV-DSTDRDRLGTAKEELHAMLEEEELKGAVLLVFAN 108 (158)
T ss_pred EEEEEEECCCCHHH-------------HHHHHHHhcCCCEEEEEE-ECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEe
Confidence 56889999997543 567788999999655544 554321111 111222222224689999999
Q ss_pred cCCccCC
Q 012559 212 KLDLMDK 218 (461)
Q Consensus 212 K~D~~~~ 218 (461)
|+|+.+.
T Consensus 109 K~Dl~~~ 115 (158)
T cd04151 109 KQDMPGA 115 (158)
T ss_pred CCCCCCC
Confidence 9998743
No 110
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.26 E-value=5.3e-12 Score=116.06 Aligned_cols=132 Identities=21% Similarity=0.306 Sum_probs=77.2
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
...|+|+|+.++|||||+++|++..- ..++.-. .... ....... ..+..
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~------~~~~~~~----------~~~~-------------~~~~~~~--~~e~~ 51 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAG------AIDKRGI----------EETK-------------NAFLDKH--PEERE 51 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHT------SSSSHHH----------HHHH-------------HCHHHSS--HHHHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhcc------ccccccc----------cccc-------------ccccccc--chhhh
Confidence 47899999999999999999997532 1111000 0000 0000000 00111
Q ss_pred cCCCCcccCccEEEEEe-cCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 115 TGKSKQISNIPIQLSIY-SPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~-~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
.+++.+.-..... ..+...++|+||||..+. ...+...+..+|+ +++|+++..+...+..
T Consensus 52 ----~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~f-------------~~~~~~~~~~~D~-ailvVda~~g~~~~~~- 112 (188)
T PF00009_consen 52 ----RGITIDLSFISFEKNENNRKITLIDTPGHEDF-------------IKEMIRGLRQADI-AILVVDANDGIQPQTE- 112 (188)
T ss_dssp ----CTSSSSSEEEEEEBTESSEEEEEEEESSSHHH-------------HHHHHHHHTTSSE-EEEEEETTTBSTHHHH-
T ss_pred ----cccccccccccccccccccceeecccccccce-------------eecccceeccccc-ceeeeecccccccccc-
Confidence 2233333333333 355678999999996442 3345566888995 5666677666554433
Q ss_pred HHHHHhCCCCCceEEEeccCCcc
Q 012559 194 KLAREVDPTGERTFGVLTKLDLM 216 (461)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~ 216 (461)
+.++.+...+.|.|+|+||+|+.
T Consensus 113 ~~l~~~~~~~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 113 EHLKILRELGIPIIVVLNKMDLI 135 (188)
T ss_dssp HHHHHHHHTT-SEEEEEETCTSS
T ss_pred cccccccccccceEEeeeeccch
Confidence 35555555678899999999998
No 111
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.25 E-value=5.2e-11 Score=109.28 Aligned_cols=156 Identities=15% Similarity=0.203 Sum_probs=85.9
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 115 (461)
..|+|+|++++|||||++++++..|-+... .|-
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~--~t~--------------------------------------------- 33 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTK--STI--------------------------------------------- 33 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCC--Cce---------------------------------------------
Confidence 369999999999999999999987621110 000
Q ss_pred CCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH---H
Q 012559 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD---A 192 (461)
Q Consensus 116 g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~---~ 192 (461)
| .......+.+. .....+.++||||.... ..+...++++++++|+++. .+...+-.. +
T Consensus 34 ~----~~~~~~~~~~~-~~~~~~~i~Dt~g~~~~-------------~~~~~~~~~~~d~iilv~d-~~~~~s~~~i~~~ 94 (188)
T cd04125 34 G----VDFKIKTVYIE-NKIIKLQIWDTNGQERF-------------RSLNNSYYRGAHGYLLVYD-VTDQESFENLKFW 94 (188)
T ss_pred e----eEEEEEEEEEC-CEEEEEEEEECCCcHHH-------------HhhHHHHccCCCEEEEEEE-CcCHHHHHHHHHH
Confidence 0 00000011111 12356789999995432 4567888999997665554 433222222 2
Q ss_pred HHHHHHhCCCCCceEEEeccCCccCCCccHHHHHhCcccccCCCeeEEEeCChhhhcccccHHHH
Q 012559 193 IKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAA 257 (461)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (461)
+...+...+...+.++|.||.|+.+................+..|+.+......++++.+..+..
T Consensus 95 ~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~ 159 (188)
T cd04125 95 INEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVK 159 (188)
T ss_pred HHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 22333444455789999999998743311111111011122335666666666555554444433
No 112
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.25 E-value=2.9e-11 Score=104.63 Aligned_cols=68 Identities=21% Similarity=0.260 Sum_probs=41.1
Q ss_pred EEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 140 LIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 140 lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
+|||||=+-.. ..+.........+++ +|++|.+|+.....-. -.+++.+ ..|+|||+||+|+....
T Consensus 40 ~IDTPGEyiE~---------~~~y~aLi~ta~dad-~V~ll~dat~~~~~~p-P~fa~~f---~~pvIGVITK~Dl~~~~ 105 (143)
T PF10662_consen 40 TIDTPGEYIEN---------PRFYHALIVTAQDAD-VVLLLQDATEPRSVFP-PGFASMF---NKPVIGVITKIDLPSDD 105 (143)
T ss_pred EEECChhheeC---------HHHHHHHHHHHhhCC-EEEEEecCCCCCccCC-chhhccc---CCCEEEEEECccCccch
Confidence 69999965421 112333344555777 6777777775433211 1244444 47999999999999433
Q ss_pred cc
Q 012559 220 TN 221 (461)
Q Consensus 220 ~~ 221 (461)
.+
T Consensus 106 ~~ 107 (143)
T PF10662_consen 106 AN 107 (143)
T ss_pred hh
Confidence 33
No 113
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.25 E-value=1.1e-10 Score=104.26 Aligned_cols=103 Identities=17% Similarity=0.240 Sum_probs=55.6
Q ss_pred EEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 140 LIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 140 lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
+|||||..... ... ... +..++.++|+ +++|++++....... ..+. .+. .+.+.++|+||+|+.+..
T Consensus 41 ~iDtpG~~~~~-----~~~---~~~-~~~~~~~ad~-il~v~d~~~~~s~~~-~~~~-~~~-~~~~ii~v~nK~Dl~~~~ 107 (158)
T PRK15467 41 DIDTPGEYFSH-----PRW---YHA-LITTLQDVDM-LIYVHGANDPESRLP-AGLL-DIG-VSKRQIAVISKTDMPDAD 107 (158)
T ss_pred cccCCccccCC-----HHH---HHH-HHHHHhcCCE-EEEEEeCCCcccccC-HHHH-hcc-CCCCeEEEEEccccCccc
Confidence 69999986531 111 122 3355788896 445556554322211 1122 222 357899999999986432
Q ss_pred c-cHHHHHhCcccccCCCeeEEEeCChhhhcccccHHHH
Q 012559 220 T-NALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAA 257 (461)
Q Consensus 220 ~-~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (461)
. .+.+.+. ......+++.+..++++++.+.+..+..
T Consensus 108 ~~~~~~~~~--~~~~~~p~~~~Sa~~g~gi~~l~~~l~~ 144 (158)
T PRK15467 108 VAATRKLLL--ETGFEEPIFELNSHDPQSVQQLVDYLAS 144 (158)
T ss_pred HHHHHHHHH--HcCCCCCEEEEECCCccCHHHHHHHHHH
Confidence 1 1222222 1222246777777777776665554443
No 114
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.25 E-value=1.6e-10 Score=105.93 Aligned_cols=113 Identities=16% Similarity=0.222 Sum_probs=70.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
+-+.|+++|.++|||||++++++|..+-. ..+|..|+.-
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~---~~~t~~~~~~-------------------------------------- 54 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQ---HQPTQHPTSE-------------------------------------- 54 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcc---cCCccccceE--------------------------------------
Confidence 44899999999999999999999976511 0122222100
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
.+.+ +...+.++||||.... +.+...|+.+++++|+++ ++...-....+.
T Consensus 55 -------------~~~~---~~~~~~~~D~~G~~~~-------------~~~~~~~~~~ad~ii~vv-D~~~~~~~~~~~ 104 (184)
T smart00178 55 -------------ELAI---GNIKFTTFDLGGHQQA-------------RRLWKDYFPEVNGIVYLV-DAYDKERFAESK 104 (184)
T ss_pred -------------EEEE---CCEEEEEEECCCCHHH-------------HHHHHHHhCCCCEEEEEE-ECCcHHHHHHHH
Confidence 0111 2356889999997543 556778999999766555 443221111121
Q ss_pred H-HHHHh---CCCCCceEEEeccCCccC
Q 012559 194 K-LAREV---DPTGERTFGVLTKLDLMD 217 (461)
Q Consensus 194 ~-l~~~~---d~~~~rti~VltK~D~~~ 217 (461)
. +.+.+ .-.+.|.++|+||+|+..
T Consensus 105 ~~l~~l~~~~~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 105 RELDALLSDEELATVPFLILGNKIDAPY 132 (184)
T ss_pred HHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 1 22212 124689999999999853
No 115
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.24 E-value=9.6e-11 Score=105.66 Aligned_cols=70 Identities=13% Similarity=0.199 Sum_probs=43.7
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHh----CCCCCceEEEe
Q 012559 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREV----DPTGERTFGVL 210 (461)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~----d~~~~rti~Vl 210 (461)
...+.++||||.... ..+...|+.++|++|+++ +++..-.-.++......+ ...+.+.++|.
T Consensus 42 ~~~i~l~Dt~G~~~~-------------~~~~~~~~~~ad~ii~V~-D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 107 (169)
T cd04158 42 NLKFTIWDVGGKHKL-------------RPLWKHYYLNTQAVVFVV-DSSHRDRVSEAHSELAKLLTEKELRDALLLIFA 107 (169)
T ss_pred CEEEEEEECCCChhc-------------chHHHHHhccCCEEEEEE-eCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEE
Confidence 367899999997553 456778899999765555 443321122222222222 12347899999
Q ss_pred ccCCccCC
Q 012559 211 TKLDLMDK 218 (461)
Q Consensus 211 tK~D~~~~ 218 (461)
||.|+.+.
T Consensus 108 NK~Dl~~~ 115 (169)
T cd04158 108 NKQDVAGA 115 (169)
T ss_pred eCcCcccC
Confidence 99998643
No 116
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.24 E-value=6.8e-11 Score=109.61 Aligned_cols=68 Identities=12% Similarity=0.141 Sum_probs=43.5
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHH----HHHHhCCCCCceEEEec
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK----LAREVDPTGERTFGVLT 211 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~----l~~~~d~~~~rti~Vlt 211 (461)
..+.|+||||.... ..+...|+..+|++|++ .++....+...... +.+.....+.|+|+|+|
T Consensus 47 ~~l~i~D~~G~~~~-------------~~~~~~~~~~ad~vilv-~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~N 112 (198)
T cd04147 47 LTLDILDTSGSYSF-------------PAMRKLSIQNSDAFALV-YAVDDPESFEEVERLREEILEVKEDKFVPIVVVGN 112 (198)
T ss_pred EEEEEEECCCchhh-------------hHHHHHHhhcCCEEEEE-EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence 46889999997653 34556788999965554 45543322222222 22222335789999999
Q ss_pred cCCccC
Q 012559 212 KLDLMD 217 (461)
Q Consensus 212 K~D~~~ 217 (461)
|+|+..
T Consensus 113 K~Dl~~ 118 (198)
T cd04147 113 KADSLE 118 (198)
T ss_pred cccccc
Confidence 999875
No 117
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.24 E-value=1e-10 Score=105.12 Aligned_cols=114 Identities=23% Similarity=0.315 Sum_probs=70.7
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhcC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 116 (461)
.|+++|+.++|||||++++.+..| |.... .| .+.
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~-~~~~~-~~-~~~------------------------------------------- 35 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEF-PENVP-RV-LPE------------------------------------------- 35 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CccCC-Cc-ccc-------------------------------------------
Confidence 689999999999999999999876 32110 00 000
Q ss_pred CCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH----H
Q 012559 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD----A 192 (461)
Q Consensus 117 ~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~----~ 192 (461)
..+...+. .....+.++||||.... ......++..++.+++ |.+++...+... +
T Consensus 36 -------~~~~~~~~-~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~ad~~il-v~d~~~~~s~~~~~~~~ 93 (166)
T cd01893 36 -------ITIPADVT-PERVPTTIVDTSSRPQD-------------RANLAAEIRKANVICL-VYSVDRPSTLERIRTKW 93 (166)
T ss_pred -------eEeeeeec-CCeEEEEEEeCCCchhh-------------hHHHhhhcccCCEEEE-EEECCCHHHHHHHHHHH
Confidence 00111111 12356889999997543 3455677888996554 455553322222 3
Q ss_pred HHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 193 IKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
...++...+ +.|.++|+||+|+.+..
T Consensus 94 ~~~i~~~~~-~~pviiv~nK~Dl~~~~ 119 (166)
T cd01893 94 LPLIRRLGV-KVPIILVGNKSDLRDGS 119 (166)
T ss_pred HHHHHHhCC-CCCEEEEEEchhccccc
Confidence 334555444 78999999999997544
No 118
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.24 E-value=8.3e-11 Score=105.81 Aligned_cols=70 Identities=19% Similarity=0.237 Sum_probs=44.0
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH---HHHHHHH-hCCCCCceEEEec
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD---AIKLARE-VDPTGERTFGVLT 211 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~---~l~l~~~-~d~~~~rti~Vlt 211 (461)
..+.++||||..+. ..+...|+...+.+++++. .+..-+-.. +...+.. ....+.|.++|.|
T Consensus 49 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~vlv~~-~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~n 114 (168)
T cd04177 49 CDLEILDTAGTEQF-------------TAMRELYIKSGQGFLLVYS-VTSEASLNELGELREQVLRIKDSDNVPMVLVGN 114 (168)
T ss_pred EEEEEEeCCCcccc-------------hhhhHHHHhhCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEE
Confidence 46789999997654 4577788888887665544 332211111 2222222 3345789999999
Q ss_pred cCCccCCC
Q 012559 212 KLDLMDKG 219 (461)
Q Consensus 212 K~D~~~~~ 219 (461)
|.|+....
T Consensus 115 K~D~~~~~ 122 (168)
T cd04177 115 KADLEDDR 122 (168)
T ss_pred ChhccccC
Confidence 99987543
No 119
>PTZ00369 Ras-like protein; Provisional
Probab=99.24 E-value=1e-10 Score=107.50 Aligned_cols=116 Identities=20% Similarity=0.214 Sum_probs=68.7
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
-..|+++|.+|+|||||++++++..|.. .. .|+
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~-~~-----~~t----------------------------------------- 37 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFID-EY-----DPT----------------------------------------- 37 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCc-Cc-----CCc-----------------------------------------
Confidence 3689999999999999999999886621 10 010
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHH
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 194 (461)
.+ ..+ ...+.+. .....+.++||||.... ..+...|++..+++|+++...+.+ +-.....
T Consensus 38 ~~--~~~---~~~~~~~-~~~~~l~i~Dt~G~~~~-------------~~l~~~~~~~~d~iilv~D~s~~~-s~~~~~~ 97 (189)
T PTZ00369 38 IE--DSY---RKQCVID-EETCLLDILDTAGQEEY-------------SAMRDQYMRTGQGFLCVYSITSRS-SFEEIAS 97 (189)
T ss_pred hh--hEE---EEEEEEC-CEEEEEEEEeCCCCccc-------------hhhHHHHhhcCCEEEEEEECCCHH-HHHHHHH
Confidence 00 000 0001111 12245789999997653 456778999999765555443322 2112222
Q ss_pred H---HHHh-CCCCCceEEEeccCCccC
Q 012559 195 L---AREV-DPTGERTFGVLTKLDLMD 217 (461)
Q Consensus 195 l---~~~~-d~~~~rti~VltK~D~~~ 217 (461)
+ +.+. ...+.|.++|.||+|+..
T Consensus 98 ~~~~i~~~~~~~~~piiiv~nK~Dl~~ 124 (189)
T PTZ00369 98 FREQILRVKDKDRVPMILVGNKCDLDS 124 (189)
T ss_pred HHHHHHHhcCCCCCCEEEEEECccccc
Confidence 2 2222 234679999999999864
No 120
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=1.5e-10 Score=112.13 Aligned_cols=174 Identities=21% Similarity=0.285 Sum_probs=106.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHhhCCCCCc---cCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHH
Q 012559 33 EALPSVAVVGGQSSGKSSVLESVVGRDFLP---RGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISD 109 (461)
Q Consensus 33 ~~lP~IvVvG~~ssGKSSllnal~G~~~lP---~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~ 109 (461)
..-|.|.++|.-|.||||+|+.|++.++ | .|..++|.+.+.+-...++..-.-......+.+ .|..+..-
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dy-pg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~---pF~gL~~F--- 128 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDY-PGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKK---PFRGLNKF--- 128 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCC-CccccCCCCCcceeEEEEecCcccccCCceeeecCCC---chhhhhhh---
Confidence 3679999999999999999999999986 6 334456665554443322211111111111222 22222211
Q ss_pred HhhhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc
Q 012559 110 ETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT 189 (461)
Q Consensus 110 ~~~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~ 189 (461)
+.+|-+.-.+.++..+-...+++|||||+-+..... -+-.--+.....-|+.++|.|||+..++.-|++.
T Consensus 129 --------G~aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQr--isR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsd 198 (532)
T KOG1954|consen 129 --------GNAFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQR--ISRGYDFTGVLEWFAERVDRIILLFDAHKLDISD 198 (532)
T ss_pred --------HHHHHHHHHHhcCChhhhhheeeeccCcccccchhc--ccccCChHHHHHHHHHhccEEEEEechhhccccH
Confidence 111222222223444445689999999998864321 1101113566778889999888888887777766
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCCccCCCccHHHH
Q 012559 190 SDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEV 225 (461)
Q Consensus 190 ~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~ 225 (461)
+-.. .+..+......+-+|+||.|.++.. ++..+
T Consensus 199 Ef~~-vi~aLkG~EdkiRVVLNKADqVdtq-qLmRV 232 (532)
T KOG1954|consen 199 EFKR-VIDALKGHEDKIRVVLNKADQVDTQ-QLMRV 232 (532)
T ss_pred HHHH-HHHHhhCCcceeEEEeccccccCHH-HHHHH
Confidence 5443 6777888888999999999999765 34443
No 121
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.24 E-value=9.2e-11 Score=102.32 Aligned_cols=24 Identities=17% Similarity=0.536 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDF 60 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~ 60 (461)
+|+++|++|+|||||+|+|+|..+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~ 25 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI 25 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc
Confidence 689999999999999999998754
No 122
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.24 E-value=5.5e-11 Score=107.25 Aligned_cols=144 Identities=15% Similarity=0.198 Sum_probs=79.5
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 115 (461)
..|+++|++++|||||++++++..+ |..... | .
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~-~~~~~~-t---~------------------------------------------ 35 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRF-PERTEA-T---I------------------------------------------ 35 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CCcccc-c---e------------------------------------------
Confidence 5799999999999999999998765 321110 0 0
Q ss_pred CCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHH
Q 012559 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (461)
Q Consensus 116 g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 195 (461)
+ ++.....+.+. .....+.++||||..... ..+...|++++|++|+++ +++...+.+....+
T Consensus 36 ~----~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~------------~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~~~ 97 (170)
T cd04115 36 G----VDFRERTVEID-GERIKVQLWDTAGQERFR------------KSMVQHYYRNVHAVVFVY-DVTNMASFHSLPSW 97 (170)
T ss_pred e----EEEEEEEEEEC-CeEEEEEEEeCCChHHHH------------HhhHHHhhcCCCEEEEEE-ECCCHHHHHhHHHH
Confidence 0 00000011111 122578899999954321 246778889999766554 44433222333233
Q ss_pred HHHh----CCCCCceEEEeccCCccCCCccHHHHHhCcccccCCCeeEEEeCC
Q 012559 196 AREV----DPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRS 244 (461)
Q Consensus 196 ~~~~----d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s 244 (461)
...+ .....|+++|.||+|+........+............|+.+.+.+
T Consensus 98 ~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 150 (170)
T cd04115 98 IEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKD 150 (170)
T ss_pred HHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccC
Confidence 3222 234689999999999875432111111101112235677666655
No 123
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.23 E-value=1.5e-10 Score=102.75 Aligned_cols=71 Identities=24% Similarity=0.281 Sum_probs=44.9
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH----HHHHHhCCCCCceEEEe
Q 012559 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI----KLAREVDPTGERTFGVL 210 (461)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l----~l~~~~d~~~~rti~Vl 210 (461)
...+.++||||.... ..+...++...+++++ |.++...-.-..+. .+.+.....+.|+++|+
T Consensus 42 ~~~~~i~D~~G~~~~-------------~~~~~~~~~~~~~~i~-v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~ 107 (158)
T cd00878 42 NVSFTVWDVGGQDKI-------------RPLWKHYYENTNGIIF-VVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFA 107 (158)
T ss_pred CEEEEEEECCCChhh-------------HHHHHHHhccCCEEEE-EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEe
Confidence 367899999996543 4566778888986555 55554321112222 22232334578999999
Q ss_pred ccCCccCCC
Q 012559 211 TKLDLMDKG 219 (461)
Q Consensus 211 tK~D~~~~~ 219 (461)
||+|+....
T Consensus 108 nK~D~~~~~ 116 (158)
T cd00878 108 NKQDLPGAL 116 (158)
T ss_pred eccCCcccc
Confidence 999987543
No 124
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.23 E-value=6.3e-11 Score=115.00 Aligned_cols=96 Identities=14% Similarity=0.114 Sum_probs=60.2
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccC
Q 012559 134 NVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKL 213 (461)
Q Consensus 134 ~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~ 213 (461)
+...++||||||..+. ...+.+++...|++| +|+++..++..++ ..+++.+...+.|.++|+||+
T Consensus 62 ~~~~i~liDTPG~~df-------------~~~~~~~l~~aD~ai-lVVDa~~g~~~~t-~~~~~~~~~~~~p~ivviNK~ 126 (270)
T cd01886 62 KDHRINIIDTPGHVDF-------------TIEVERSLRVLDGAV-AVFDAVAGVEPQT-ETVWRQADRYNVPRIAFVNKM 126 (270)
T ss_pred CCEEEEEEECCCcHHH-------------HHHHHHHHHHcCEEE-EEEECCCCCCHHH-HHHHHHHHHcCCCEEEEEECC
Confidence 3478999999997653 334678899999644 5667766655443 335566666688999999999
Q ss_pred CccCCCc-cHHHHHhCcccccCCCeeEEEeCChh
Q 012559 214 DLMDKGT-NALEVLEGRSYRLQHPWVGIVNRSQA 246 (461)
Q Consensus 214 D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~ 246 (461)
|+..... ...+.++ .......+..+++.|+.
T Consensus 127 D~~~a~~~~~~~~l~--~~l~~~~~~~~~Pisa~ 158 (270)
T cd01886 127 DRTGADFFRVVEQIR--EKLGANPVPLQLPIGEE 158 (270)
T ss_pred CCCCCCHHHHHHHHH--HHhCCCceEEEeccccC
Confidence 9874321 2222222 11112245566677765
No 125
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.23 E-value=1.1e-10 Score=105.75 Aligned_cols=147 Identities=17% Similarity=0.192 Sum_probs=83.5
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhcC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 116 (461)
.|+|+|++++|||||++.+.+..| |.....++ +
T Consensus 4 ki~vvG~~~vGKTsL~~~~~~~~f-~~~~~~t~----------------------------------------------~ 36 (172)
T cd04141 4 KIVMLGAGGVGKSAVTMQFISHSF-PDYHDPTI----------------------------------------------E 36 (172)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC-CCCcCCcc----------------------------------------------c
Confidence 699999999999999999998876 32111110 0
Q ss_pred CCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH---HH
Q 012559 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD---AI 193 (461)
Q Consensus 117 ~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~---~l 193 (461)
..+ ...+.+.+ ....+.|+||||.... ..+...|+..++++|+++...+ ..+-.. +.
T Consensus 37 --~~~---~~~~~~~~-~~~~l~i~Dt~G~~~~-------------~~l~~~~~~~~d~~ilv~d~~~-~~Sf~~~~~~~ 96 (172)
T cd04141 37 --DAY---KQQARIDN-EPALLDILDTAGQAEF-------------TAMRDQYMRCGEGFIICYSVTD-RHSFQEASEFK 96 (172)
T ss_pred --ceE---EEEEEECC-EEEEEEEEeCCCchhh-------------HHHhHHHhhcCCEEEEEEECCc-hhHHHHHHHHH
Confidence 000 00111211 2246889999996543 5677889999997666554333 222222 22
Q ss_pred HHHHHh-CCCCCceEEEeccCCccCCCc----cHHHHHhCcccccCCCeeEEEeCChhhhcccccH
Q 012559 194 KLAREV-DPTGERTFGVLTKLDLMDKGT----NALEVLEGRSYRLQHPWVGIVNRSQADINKNVDM 254 (461)
Q Consensus 194 ~l~~~~-d~~~~rti~VltK~D~~~~~~----~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~ 254 (461)
..+.+. ...+.|+++|.||+|+.+... +.....+ ..+..|+.+......++++.+..
T Consensus 97 ~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~----~~~~~~~e~Sa~~~~~v~~~f~~ 158 (172)
T cd04141 97 KLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAR----EFNCPFFETSAALRHYIDDAFHG 158 (172)
T ss_pred HHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHH----HhCCEEEEEecCCCCCHHHHHHH
Confidence 334443 234689999999999864321 1111111 22345666655555555444433
No 126
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.22 E-value=1.1e-10 Score=105.05 Aligned_cols=27 Identities=33% Similarity=0.528 Sum_probs=24.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDF 60 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~ 60 (461)
..-+|+|+|.+++|||||++++++..|
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~ 30 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKF 30 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCC
Confidence 357899999999999999999998876
No 127
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.22 E-value=1.7e-10 Score=103.59 Aligned_cols=112 Identities=18% Similarity=0.253 Sum_probs=70.4
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhcC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 116 (461)
||+++|.+++|||||++++++..+ +.. -.|+ .|
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~-~~~-----~~pt-----------------------------------------~g 33 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERS-LES-----VVPT-----------------------------------------TG 33 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC-ccc-----cccc-----------------------------------------CC
Confidence 689999999999999999998765 211 1111 01
Q ss_pred CCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHH
Q 012559 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLA 196 (461)
Q Consensus 117 ~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~ 196 (461)
+. . +.+.. ....+.++||||.... ..+...|++++|++|+++ ++.....-..+....
T Consensus 34 ----~~--~--~~i~~-~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~ad~ii~V~-D~t~~~s~~~~~~~l 90 (164)
T cd04162 34 ----FN--S--VAIPT-QDAIMELLEIGGSQNL-------------RKYWKRYLSGSQGLIFVV-DSADSERLPLARQEL 90 (164)
T ss_pred ----cc--e--EEEee-CCeEEEEEECCCCcch-------------hHHHHHHHhhCCEEEEEE-ECCCHHHHHHHHHHH
Confidence 10 0 11222 2367899999996543 456778999999766554 544322222222222
Q ss_pred HHhC--CCCCceEEEeccCCccCC
Q 012559 197 REVD--PTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 197 ~~~d--~~~~rti~VltK~D~~~~ 218 (461)
.++. ..+.|.++|.||.|+...
T Consensus 91 ~~~~~~~~~~piilv~NK~Dl~~~ 114 (164)
T cd04162 91 HQLLQHPPDLPLVVLANKQDLPAA 114 (164)
T ss_pred HHHHhCCCCCcEEEEEeCcCCcCC
Confidence 3331 247899999999998654
No 128
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.22 E-value=4.6e-11 Score=112.83 Aligned_cols=75 Identities=21% Similarity=0.230 Sum_probs=49.4
Q ss_pred EecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHh-cCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEE
Q 012559 130 IYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYV-EKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFG 208 (461)
Q Consensus 130 i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi-~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~ 208 (461)
++......++||||||..+. ...+..... ..+|. +++|+++..+...++. .++..+...+.|.++
T Consensus 78 ~~~~~~~~i~liDtpG~~~~------------~~~~~~~~~~~~~D~-~llVvda~~g~~~~d~-~~l~~l~~~~ip~iv 143 (224)
T cd04165 78 ICEKSSKLVTFIDLAGHERY------------LKTTLFGLTGYAPDY-AMLVVAANAGIIGMTK-EHLGLALALNIPVFV 143 (224)
T ss_pred eeeeCCcEEEEEECCCcHHH------------HHHHHHhhcccCCCE-EEEEEECCCCCcHHHH-HHHHHHHHcCCCEEE
Confidence 33444578999999996543 133333322 25674 5667777766655443 366666667899999
Q ss_pred EeccCCccCC
Q 012559 209 VLTKLDLMDK 218 (461)
Q Consensus 209 VltK~D~~~~ 218 (461)
|+||+|++++
T Consensus 144 vvNK~D~~~~ 153 (224)
T cd04165 144 VVTKIDLAPA 153 (224)
T ss_pred EEECccccCH
Confidence 9999999754
No 129
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.22 E-value=7.6e-11 Score=104.37 Aligned_cols=115 Identities=18% Similarity=0.198 Sum_probs=68.9
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhcC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 116 (461)
.|+++|.++||||||++++++..+ +.....++....
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~~~~~~~------------------------------------------- 36 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF-VEEYDPTIEDSY------------------------------------------- 36 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CcCcCCChhHeE-------------------------------------------
Confidence 489999999999999999998864 322222211110
Q ss_pred CCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHH--
Q 012559 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK-- 194 (461)
Q Consensus 117 ~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~-- 194 (461)
.....+ ......+.++|+||.... ..+...++...+.+++++...+. .+......
T Consensus 37 --------~~~~~~-~~~~~~~~l~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~ 93 (160)
T cd00876 37 --------RKTIVV-DGETYTLDILDTAGQEEF-------------SAMRDLYIRQGDGFILVYSITDR-ESFEEIKGYR 93 (160)
T ss_pred --------EEEEEE-CCEEEEEEEEECCChHHH-------------HHHHHHHHhcCCEEEEEEECCCH-HHHHHHHHHH
Confidence 000111 112256789999996542 45666788888866655543332 22222222
Q ss_pred -HHHHhCC-CCCceEEEeccCCccCC
Q 012559 195 -LAREVDP-TGERTFGVLTKLDLMDK 218 (461)
Q Consensus 195 -l~~~~d~-~~~rti~VltK~D~~~~ 218 (461)
......+ .+.|+++|+||+|+...
T Consensus 94 ~~~~~~~~~~~~p~ivv~nK~D~~~~ 119 (160)
T cd00876 94 EQILRVKDDEDIPIVLVGNKCDLENE 119 (160)
T ss_pred HHHHHhcCCCCCcEEEEEECCccccc
Confidence 2222222 47899999999999863
No 130
>PLN03110 Rab GTPase; Provisional
Probab=99.22 E-value=1.3e-10 Score=109.42 Aligned_cols=118 Identities=15% Similarity=0.204 Sum_probs=72.8
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
.-.|++||++++|||||+++|++..+. ... .|+
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~-~~~-----~~t----------------------------------------- 44 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEFC-LES-----KST----------------------------------------- 44 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC-CCC-----CCc-----------------------------------------
Confidence 458999999999999999999998762 111 111
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---HH
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---SD 191 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~---~~ 191 (461)
.| ..+. ...+.+. .....+.|+||||.... ..+...|+++++++| +|.+.+....- ..
T Consensus 45 ~g--~~~~--~~~v~~~-~~~~~l~l~Dt~G~~~~-------------~~~~~~~~~~~~~~i-lv~d~~~~~s~~~~~~ 105 (216)
T PLN03110 45 IG--VEFA--TRTLQVE-GKTVKAQIWDTAGQERY-------------RAITSAYYRGAVGAL-LVYDITKRQTFDNVQR 105 (216)
T ss_pred ee--EEEE--EEEEEEC-CEEEEEEEEECCCcHHH-------------HHHHHHHhCCCCEEE-EEEECCChHHHHHHHH
Confidence 00 0000 0111121 12257889999995432 567788999998655 44554432221 23
Q ss_pred HHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
++..++...+.+.+.++|.||+|+...
T Consensus 106 ~~~~~~~~~~~~~piiiv~nK~Dl~~~ 132 (216)
T PLN03110 106 WLRELRDHADSNIVIMMAGNKSDLNHL 132 (216)
T ss_pred HHHHHHHhCCCCCeEEEEEEChhcccc
Confidence 444455555567899999999998643
No 131
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.22 E-value=1.3e-10 Score=104.74 Aligned_cols=113 Identities=16% Similarity=0.215 Sum_probs=70.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+++|.+++|||||+++|++..+.. -.|+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-------~~~t---------------------------------------- 40 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-------TIPT---------------------------------------- 40 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc-------ccCC----------------------------------------
Confidence 34789999999999999999998765511 0121
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
.| +... . +.. ....+.++||||..+. ..+...|+.++|++|+++ |++...+-..+.
T Consensus 41 -~g----~~~~--~--~~~-~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~a~~ii~v~-D~t~~~s~~~~~ 96 (168)
T cd04149 41 -VG----FNVE--T--VTY-KNVKFNVWDVGGQDKI-------------RPLWRHYYTGTQGLIFVV-DSADRDRIDEAR 96 (168)
T ss_pred -cc----cceE--E--EEE-CCEEEEEEECCCCHHH-------------HHHHHHHhccCCEEEEEE-eCCchhhHHHHH
Confidence 01 0000 0 111 2356899999997543 456678999999655554 454332223333
Q ss_pred HHHHHh-C---CCCCceEEEeccCCccC
Q 012559 194 KLAREV-D---PTGERTFGVLTKLDLMD 217 (461)
Q Consensus 194 ~l~~~~-d---~~~~rti~VltK~D~~~ 217 (461)
..+.++ . ..+.|.++|.||+|+.+
T Consensus 97 ~~~~~~~~~~~~~~~piilv~NK~Dl~~ 124 (168)
T cd04149 97 QELHRIINDREMRDALLLVFANKQDLPD 124 (168)
T ss_pred HHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence 333322 1 13579999999999864
No 132
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.21 E-value=1.4e-10 Score=104.39 Aligned_cols=71 Identities=14% Similarity=0.232 Sum_probs=46.1
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhC----CCCCceEEEe
Q 012559 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVD----PTGERTFGVL 210 (461)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d----~~~~rti~Vl 210 (461)
...+.++|+||.... +.+...|+.+++++|+++ |+.....-..+......+. ..+.|.++|+
T Consensus 42 ~~~~~i~D~~G~~~~-------------~~~~~~~~~~a~~ii~V~-D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~ 107 (167)
T cd04161 42 KYEVCIFDLGGGANF-------------RGIWVNYYAEAHGLVFVV-DSSDDDRVQEVKEILRELLQHPRVSGKPILVLA 107 (167)
T ss_pred CEEEEEEECCCcHHH-------------HHHHHHHHcCCCEEEEEE-ECCchhHHHHHHHHHHHHHcCccccCCcEEEEE
Confidence 366899999995432 567789999999766555 4443222233332333331 2468999999
Q ss_pred ccCCccCCC
Q 012559 211 TKLDLMDKG 219 (461)
Q Consensus 211 tK~D~~~~~ 219 (461)
||.|+.+..
T Consensus 108 NK~Dl~~~~ 116 (167)
T cd04161 108 NKQDKKNAL 116 (167)
T ss_pred eCCCCcCCC
Confidence 999987543
No 133
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.21 E-value=2.2e-11 Score=113.92 Aligned_cols=80 Identities=14% Similarity=0.144 Sum_probs=47.2
Q ss_pred ccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHH--HHHHHH
Q 012559 121 ISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA--IKLARE 198 (461)
Q Consensus 121 ~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~--l~l~~~ 198 (461)
++.+.....+ ..+...+.|+||||.... ...+..++..+|. +++|+++...+..+.. ..+++.
T Consensus 63 ~T~~~~~~~~-~~~~~~~~liDTpG~~~~-------------~~~~~~~~~~ad~-~llVvD~~~~~~~~~~~~~~~~~~ 127 (208)
T cd04166 63 ITIDVAYRYF-STPKRKFIIADTPGHEQY-------------TRNMVTGASTADL-AILLVDARKGVLEQTRRHSYILSL 127 (208)
T ss_pred cCeecceeEE-ecCCceEEEEECCcHHHH-------------HHHHHHhhhhCCE-EEEEEECCCCccHhHHHHHHHHHH
Confidence 4444433333 335578999999996432 2224457788885 5566666655433322 223333
Q ss_pred hCCCC-CceEEEeccCCccCC
Q 012559 199 VDPTG-ERTFGVLTKLDLMDK 218 (461)
Q Consensus 199 ~d~~~-~rti~VltK~D~~~~ 218 (461)
. + .+.|+|+||+|+...
T Consensus 128 ~---~~~~iIvviNK~D~~~~ 145 (208)
T cd04166 128 L---GIRHVVVAVNKMDLVDY 145 (208)
T ss_pred c---CCCcEEEEEEchhcccC
Confidence 3 3 357789999999753
No 134
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.21 E-value=9.1e-11 Score=108.03 Aligned_cols=68 Identities=21% Similarity=0.243 Sum_probs=42.0
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH---HHHHHHHhCCCCCceEEEecc
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD---AIKLAREVDPTGERTFGVLTK 212 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~---~l~l~~~~d~~~~rti~VltK 212 (461)
..+.++||||..+. ..+...|+.++++++ +|.+.+..-+-.. ++..++...+ +.|+++|.||
T Consensus 50 ~~l~i~D~~G~~~~-------------~~~~~~~~~~~d~ii-lv~d~~~~~s~~~~~~~~~~i~~~~~-~~piilv~nK 114 (193)
T cd04118 50 VTLGIWDTAGSERY-------------EAMSRIYYRGAKAAI-VCYDLTDSSSFERAKFWVKELQNLEE-HCKIYLCGTK 114 (193)
T ss_pred EEEEEEECCCchhh-------------hhhhHhhcCCCCEEE-EEEECCCHHHHHHHHHHHHHHHhcCC-CCCEEEEEEc
Confidence 45789999996543 445667888888655 4445543222222 2223333332 5899999999
Q ss_pred CCccCC
Q 012559 213 LDLMDK 218 (461)
Q Consensus 213 ~D~~~~ 218 (461)
+|+.+.
T Consensus 115 ~Dl~~~ 120 (193)
T cd04118 115 SDLIEQ 120 (193)
T ss_pred cccccc
Confidence 998643
No 135
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.21 E-value=3.4e-11 Score=111.30 Aligned_cols=70 Identities=13% Similarity=0.103 Sum_probs=46.9
Q ss_pred CCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCc-eEEEec
Q 012559 133 PNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGER-TFGVLT 211 (461)
Q Consensus 133 p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~r-ti~Vlt 211 (461)
.+..+++|+||||+.+. ...+...+..+|+ +++|+++..+...++. .+++.+...+.+ .|+|+|
T Consensus 62 ~~~~~i~~iDtPG~~~~-------------~~~~~~~~~~~D~-~ilVvda~~g~~~~~~-~~~~~~~~~~~~~iIvviN 126 (195)
T cd01884 62 TANRHYAHVDCPGHADY-------------IKNMITGAAQMDG-AILVVSATDGPMPQTR-EHLLLARQVGVPYIVVFLN 126 (195)
T ss_pred CCCeEEEEEECcCHHHH-------------HHHHHHHhhhCCE-EEEEEECCCCCcHHHH-HHHHHHHHcCCCcEEEEEe
Confidence 34568999999997532 3334566778885 5556667666554433 345555556665 779999
Q ss_pred cCCccC
Q 012559 212 KLDLMD 217 (461)
Q Consensus 212 K~D~~~ 217 (461)
|+|++.
T Consensus 127 K~D~~~ 132 (195)
T cd01884 127 KADMVD 132 (195)
T ss_pred CCCCCC
Confidence 999974
No 136
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.21 E-value=1.4e-10 Score=105.44 Aligned_cols=107 Identities=13% Similarity=0.100 Sum_probs=56.1
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHH----HHHHHHhCCCCCceEEEec
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA----IKLAREVDPTGERTFGVLT 211 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~----l~l~~~~d~~~~rti~Vlt 211 (461)
..+.++||||..+. ..+...+....+++++++...+ ...-+.+ ..+++.....+.|.|+|+|
T Consensus 49 ~~~~l~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~p~ilv~N 114 (180)
T cd04137 49 YHLEIVDTAGQDEY-------------SILPQKYSIGIHGYILVYSVTS-RKSFEVVKVIYDKILDMLGKESVPIVLVGN 114 (180)
T ss_pred EEEEEEECCChHhh-------------HHHHHHHHhhCCEEEEEEECCC-HHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 46789999996542 3445567778887655554333 2222222 2233433445679999999
Q ss_pred cCCccCCCccHHHHHhCcccccCCCeeEEEeCChhhhcccccHHH
Q 012559 212 KLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIA 256 (461)
Q Consensus 212 K~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (461)
|+|+..+...............+..++.+...+..++.+.+..+.
T Consensus 115 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 159 (180)
T cd04137 115 KSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLI 159 (180)
T ss_pred chhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 999874332111111101112223455555555544444444433
No 137
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.21 E-value=9.5e-11 Score=108.23 Aligned_cols=69 Identities=16% Similarity=0.238 Sum_probs=47.2
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCC
Q 012559 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (461)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 214 (461)
...+.|+||||..+. ..++..|+.++|++++ |.++..+...+. ..+.+.+...+.|.++|+||+|
T Consensus 64 ~~~~~l~DtpG~~~~-------------~~~~~~~~~~~d~~il-V~d~~~~~~~~~-~~~~~~~~~~~~p~iiv~NK~D 128 (194)
T cd01891 64 DTKINIVDTPGHADF-------------GGEVERVLSMVDGVLL-LVDASEGPMPQT-RFVLKKALELGLKPIVVINKID 128 (194)
T ss_pred CEEEEEEECCCcHHH-------------HHHHHHHHHhcCEEEE-EEECCCCccHHH-HHHHHHHHHcCCCEEEEEECCC
Confidence 467899999997653 4577889999997555 555554332222 2234444445789999999999
Q ss_pred ccCC
Q 012559 215 LMDK 218 (461)
Q Consensus 215 ~~~~ 218 (461)
+...
T Consensus 129 l~~~ 132 (194)
T cd01891 129 RPDA 132 (194)
T ss_pred CCCC
Confidence 9743
No 138
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.20 E-value=1.9e-10 Score=122.46 Aligned_cols=134 Identities=19% Similarity=0.228 Sum_probs=78.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhh
Q 012559 33 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (461)
Q Consensus 33 ~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~ 112 (461)
++.|.|+++|++++|||||||+|+|..+.....+..|+....-.+. . .
T Consensus 2 ~r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~-~-------------------------------~ 49 (590)
T TIGR00491 2 LRSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIP-M-------------------------------D 49 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEee-e-------------------------------c
Confidence 3679999999999999999999999877444334444422100000 0 0
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHH
Q 012559 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (461)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~ 192 (461)
...+. .....-..++. ...+.++|+||||.... ..+...++..+|+ +++|++++.+...+.
T Consensus 50 ~~~~~---~~~~~~~~~v~-~~~~~l~~iDTpG~e~f-------------~~l~~~~~~~aD~-~IlVvD~~~g~~~qt- 110 (590)
T TIGR00491 50 VIEGI---CGDLLKKFKIR-LKIPGLLFIDTPGHEAF-------------TNLRKRGGALADL-AILIVDINEGFKPQT- 110 (590)
T ss_pred ccccc---ccccccccccc-cccCcEEEEECCCcHhH-------------HHHHHHHHhhCCE-EEEEEECCcCCCHhH-
Confidence 00000 00000000011 11256999999996543 4566678889995 555666665443332
Q ss_pred HHHHHHhCCCCCceEEEeccCCccC
Q 012559 193 IKLAREVDPTGERTFGVLTKLDLMD 217 (461)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~ 217 (461)
...+..+...+.|.++|+||+|+.+
T Consensus 111 ~e~i~~l~~~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 111 QEALNILRMYKTPFVVAANKIDRIP 135 (590)
T ss_pred HHHHHHHHHcCCCEEEEEECCCccc
Confidence 2233344445789999999999974
No 139
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.20 E-value=3.5e-11 Score=120.74 Aligned_cols=159 Identities=18% Similarity=0.199 Sum_probs=107.6
Q ss_pred hhhhhHHHHHHHHHHHHHHh---ccCCCCCCccCCCCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEe
Q 012559 2 ATMTSLIGLINKIQRACTVL---GDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLH 78 (461)
Q Consensus 2 ~~~~~l~~~~~~lq~~~~~~---~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~ 78 (461)
++++.|..++.+.+..+..+ .++-...|+..++-+++.|||.||+||||++|.++..++ .++
T Consensus 132 aAlgrm~tv~k~q~~sl~yLeqVrqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradv-----evq---------- 196 (620)
T KOG1490|consen 132 AALGRMATIIKRQKSSLEYLEQVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD-----EVQ---------- 196 (620)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCCCCcCeEEEecCCCCCcHhhccccccccc-----ccC----------
Confidence 34556666666666655544 355567788778999999999999999999998887654 111
Q ss_pred ecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccH
Q 012559 79 QTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESI 158 (461)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~ 158 (461)
+..|+.+.+.+.........+.++|||||-+.+ .+.
T Consensus 197 ---------------------------------------pYaFTTksL~vGH~dykYlrwQViDTPGILD~p-----lEd 232 (620)
T KOG1490|consen 197 ---------------------------------------PYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRP-----EED 232 (620)
T ss_pred ---------------------------------------CcccccchhhhhhhhhheeeeeecCCccccCcc-----hhh
Confidence 112223333333455556788999999999864 444
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCC--ccccHHHHHHHHHhCCC--CCceEEEeccCCccCCC
Q 012559 159 VEDIENMVRSYVEKPSCIILAISPANQ--DIATSDAIKLAREVDPT--GERTFGVLTKLDLMDKG 219 (461)
Q Consensus 159 ~~~i~~~v~~yi~~~~~iIL~V~~a~~--d~~~~~~l~l~~~~d~~--~~rti~VltK~D~~~~~ 219 (461)
...++..+...+.+-.+.+|+++|-+. +.+..+-.+|...+.|. ..++|+|+||+|.+.+.
T Consensus 233 rN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~e 297 (620)
T KOG1490|consen 233 RNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPE 297 (620)
T ss_pred hhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCcc
Confidence 444455555556655556788877653 44445555677777774 68899999999999765
No 140
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.20 E-value=1.9e-10 Score=102.80 Aligned_cols=148 Identities=14% Similarity=0.172 Sum_probs=81.4
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhcC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 116 (461)
+|+++|++++|||||++.+++..|.|... .|..+.
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~--~t~~~~------------------------------------------- 36 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHI--STIGVD------------------------------------------- 36 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCC--CceeeE-------------------------------------------
Confidence 58999999999999999999887732211 110000
Q ss_pred CCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHH
Q 012559 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLA 196 (461)
Q Consensus 117 ~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~ 196 (461)
+ ....+.+.+ ....+.++||||.... ..+...|+.+++++++++ +.+..-+-+....+.
T Consensus 37 ----~--~~~~~~~~~-~~~~l~i~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~-d~~~~~sf~~~~~~~ 95 (161)
T cd04117 37 ----F--KMKTIEVDG-IKVRIQIWDTAGQERY-------------QTITKQYYRRAQGIFLVY-DISSERSYQHIMKWV 95 (161)
T ss_pred ----E--EEEEEEECC-EEEEEEEEeCCCcHhH-------------HhhHHHHhcCCcEEEEEE-ECCCHHHHHHHHHHH
Confidence 0 000111111 1246789999995443 456778899999655554 443322222222222
Q ss_pred ---HHhCCCCCceEEEeccCCccCCCccHHHHHhCcccccCCCeeEEEeCChhhhcc
Q 012559 197 ---REVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINK 250 (461)
Q Consensus 197 ---~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~ 250 (461)
+...+...+.++|.||.|+.+......+.........+.+|+.+......++++
T Consensus 96 ~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 152 (161)
T cd04117 96 SDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKE 152 (161)
T ss_pred HHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 234445678999999999865432111111101112334566666555444443
No 141
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.20 E-value=1.3e-10 Score=110.46 Aligned_cols=24 Identities=38% Similarity=0.452 Sum_probs=22.2
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDF 60 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~ 60 (461)
+|+++|.+|+|||||+|+|+|...
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~ 25 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS 25 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc
Confidence 689999999999999999999853
No 142
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.19 E-value=6e-11 Score=113.23 Aligned_cols=126 Identities=21% Similarity=0.302 Sum_probs=78.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccC--CCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRG--SGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDET 111 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~--~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~ 111 (461)
..+.|.+||-||||||||||+|+..+ |.- ...+|-+|.
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AK--pkVa~YaFTTL~P~-------------------------------------- 234 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAK--PKVAHYAFTTLRPH-------------------------------------- 234 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccC--Ccccccceeeeccc--------------------------------------
Confidence 35778899999999999999999875 321 123555553
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCc---cc
Q 012559 112 DRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD---IA 188 (461)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d---~~ 188 (461)
.| .+...+-.++++-|+||++..+. +.+-+----.+.|+.++ ++++|+|.+.. -.
T Consensus 235 ---iG------------~v~yddf~q~tVADiPGiI~GAh------~nkGlG~~FLrHiER~~-~l~fVvD~s~~~~~~p 292 (366)
T KOG1489|consen 235 ---IG------------TVNYDDFSQITVADIPGIIEGAH------MNKGLGYKFLRHIERCK-GLLFVVDLSGKQLRNP 292 (366)
T ss_pred ---cc------------eeeccccceeEeccCcccccccc------ccCcccHHHHHHHHhhc-eEEEEEECCCcccCCH
Confidence 12 12333345699999999999653 33222223445566777 57777777654 22
Q ss_pred cHHHHHHHHHhCC-----CCCceEEEeccCCccCCCcc
Q 012559 189 TSDAIKLAREVDP-----TGERTFGVLTKLDLMDKGTN 221 (461)
Q Consensus 189 ~~~~l~l~~~~d~-----~~~rti~VltK~D~~~~~~~ 221 (461)
.+....|..++.- ...+.++|+||+|+.+...+
T Consensus 293 ~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~ 330 (366)
T KOG1489|consen 293 WQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKN 330 (366)
T ss_pred HHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHH
Confidence 2222224444431 24679999999999744433
No 143
>PLN03108 Rab family protein; Provisional
Probab=99.19 E-value=2.2e-10 Score=107.23 Aligned_cols=148 Identities=15% Similarity=0.206 Sum_probs=82.8
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
.-.|+|+|++++|||||++.|++..|-+... |+
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~------~t----------------------------------------- 38 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD------LT----------------------------------------- 38 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCC------CC-----------------------------------------
Confidence 4689999999999999999999987633211 11
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccH---H
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---D 191 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~---~ 191 (461)
.| ..+ ....+.+.+. ...+.++||||.... ..+...|+..++++++++ +.+...+.+ .
T Consensus 39 i~--~~~--~~~~i~~~~~-~i~l~l~Dt~G~~~~-------------~~~~~~~~~~ad~~vlv~-D~~~~~s~~~l~~ 99 (210)
T PLN03108 39 IG--VEF--GARMITIDNK-PIKLQIWDTAGQESF-------------RSITRSYYRGAAGALLVY-DITRRETFNHLAS 99 (210)
T ss_pred cc--ceE--EEEEEEECCE-EEEEEEEeCCCcHHH-------------HHHHHHHhccCCEEEEEE-ECCcHHHHHHHHH
Confidence 00 000 0001111111 135789999996442 456778888999766555 443221212 2
Q ss_pred HHHHHHHhCCCCCceEEEeccCCccCCCc-c---HHHHHhCcccccCCCeeEEEeCChhhhcccc
Q 012559 192 AIKLAREVDPTGERTFGVLTKLDLMDKGT-N---ALEVLEGRSYRLQHPWVGIVNRSQADINKNV 252 (461)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~~~-~---~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (461)
++..+........++++|.||+|+..... . .....+ .....|+.+......++++.+
T Consensus 100 ~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~v~e~f 160 (210)
T PLN03108 100 WLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAK----EHGLIFMEASAKTAQNVEEAF 160 (210)
T ss_pred HHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHH----HcCCEEEEEeCCCCCCHHHHH
Confidence 22223333344688999999999975431 1 122221 123456666655555544433
No 144
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.19 E-value=6.2e-10 Score=102.14 Aligned_cols=113 Identities=15% Similarity=0.219 Sum_probs=69.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
+-++|+++|.+|||||||+++|++..+.+ ...|..|..
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~---~~~T~~~~~--------------------------------------- 55 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQ---HVPTLHPTS--------------------------------------- 55 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcc---cCCccCcce---------------------------------------
Confidence 56899999999999999999999876411 112222210
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
..+.+ +...+.++|+||.... ..+...|+..++.+++++ ++...-.-....
T Consensus 56 ------------~~i~~---~~~~~~l~D~~G~~~~-------------~~~~~~~~~~ad~iilV~-D~~~~~s~~~~~ 106 (190)
T cd00879 56 ------------EELTI---GNIKFKTFDLGGHEQA-------------RRLWKDYFPEVDGIVFLV-DAADPERFQESK 106 (190)
T ss_pred ------------EEEEE---CCEEEEEEECCCCHHH-------------HHHHHHHhccCCEEEEEE-ECCcHHHHHHHH
Confidence 01111 1246789999995432 456778999999765555 443221111121
Q ss_pred HHHHH----hCCCCCceEEEeccCCccC
Q 012559 194 KLARE----VDPTGERTFGVLTKLDLMD 217 (461)
Q Consensus 194 ~l~~~----~d~~~~rti~VltK~D~~~ 217 (461)
..... ....+.|.++|+||+|+..
T Consensus 107 ~~~~~i~~~~~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 107 EELDSLLSDEELANVPFLILGNKIDLPG 134 (190)
T ss_pred HHHHHHHcCccccCCCEEEEEeCCCCCC
Confidence 12222 2234689999999999864
No 145
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.18 E-value=9.3e-11 Score=107.92 Aligned_cols=153 Identities=21% Similarity=0.206 Sum_probs=89.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
.+-.|+|+|+.++|||||+.++.+..| +.... .| +
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~-~~~~~-~t--~----------------------------------------- 39 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGST-ESPYG-YN--M----------------------------------------- 39 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC-CCCCC-Cc--c-----------------------------------------
Confidence 356899999999999999999998765 11100 00 0
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
| ..+ ....+.+. .....|.|+||||..+. ..+...|+++++++||+ .+.+...+-..+.
T Consensus 40 --~--~~~--~~~~i~~~-~~~~~l~iwDt~G~~~~-------------~~l~~~~~~~ad~illV-fD~t~~~Sf~~~~ 98 (189)
T cd04121 40 --G--IDY--KTTTILLD-GRRVKLQLWDTSGQGRF-------------CTIFRSYSRGAQGIILV-YDITNRWSFDGID 98 (189)
T ss_pred --e--eEE--EEEEEEEC-CEEEEEEEEeCCCcHHH-------------HHHHHHHhcCCCEEEEE-EECcCHHHHHHHH
Confidence 0 000 01111121 12357889999997543 56778899999965554 4544333333333
Q ss_pred HH---HHHhCCCCCceEEEeccCCccCCCc----cHHHHHhCcccccCCCeeEEEeCChhhhcccccHHHH
Q 012559 194 KL---AREVDPTGERTFGVLTKLDLMDKGT----NALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAA 257 (461)
Q Consensus 194 ~l---~~~~d~~~~rti~VltK~D~~~~~~----~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (461)
.+ ++...+ +.+.|+|.||.|+..... +...+.+ .....|+.+......++++.+..+..
T Consensus 99 ~w~~~i~~~~~-~~piilVGNK~DL~~~~~v~~~~~~~~a~----~~~~~~~e~SAk~g~~V~~~F~~l~~ 164 (189)
T cd04121 99 RWIKEIDEHAP-GVPKILVGNRLHLAFKRQVATEQAQAYAE----RNGMTFFEVSPLCNFNITESFTELAR 164 (189)
T ss_pred HHHHHHHHhCC-CCCEEEEEECccchhccCCCHHHHHHHHH----HcCCEEEEecCCCCCCHHHHHHHHHH
Confidence 33 333333 689999999999965321 1222222 23345777777666666655554443
No 146
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.18 E-value=1.1e-10 Score=104.49 Aligned_cols=70 Identities=16% Similarity=0.211 Sum_probs=42.9
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHH---HHHHHHhC--CCCCceEEEe
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA---IKLAREVD--PTGERTFGVL 210 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~---l~l~~~~d--~~~~rti~Vl 210 (461)
..+.++||||..... ......+++.+|++| +|.+++...+-+.. ...+.... ..+.|.++|.
T Consensus 47 ~~~~i~D~~g~~~~~------------~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~ 113 (165)
T cd04146 47 VSLEILDTAGQQQAD------------TEQLERSIRWADGFV-LVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVG 113 (165)
T ss_pred EEEEEEECCCCcccc------------cchHHHHHHhCCEEE-EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 457899999987421 223556788899655 55555433222222 23334433 3368899999
Q ss_pred ccCCccCC
Q 012559 211 TKLDLMDK 218 (461)
Q Consensus 211 tK~D~~~~ 218 (461)
||+|+...
T Consensus 114 nK~Dl~~~ 121 (165)
T cd04146 114 NKADLLHY 121 (165)
T ss_pred ECCchHHh
Confidence 99998643
No 147
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.18 E-value=2.3e-10 Score=103.76 Aligned_cols=112 Identities=16% Similarity=0.207 Sum_probs=68.0
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
-.+|+++|.+++|||||+++|++..+.+. .|+
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~-------~~t----------------------------------------- 46 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHT-------SPT----------------------------------------- 46 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCc-------CCc-----------------------------------------
Confidence 36899999999999999999998765211 111
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHH
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 194 (461)
.|. +...+.+ +...+.++||||.... ..+...|+.+++.+|+++ |++....-..+..
T Consensus 47 ~~~------~~~~~~~---~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~vi~V~-D~s~~~~~~~~~~ 103 (174)
T cd04153 47 IGS------NVEEIVY---KNIRFLMWDIGGQESL-------------RSSWNTYYTNTDAVILVI-DSTDRERLPLTKE 103 (174)
T ss_pred ccc------ceEEEEE---CCeEEEEEECCCCHHH-------------HHHHHHHhhcCCEEEEEE-ECCCHHHHHHHHH
Confidence 000 0000111 2357899999996542 455677889999655554 5543211112211
Q ss_pred HHHHh----CCCCCceEEEeccCCccC
Q 012559 195 LAREV----DPTGERTFGVLTKLDLMD 217 (461)
Q Consensus 195 l~~~~----d~~~~rti~VltK~D~~~ 217 (461)
...++ ...+.|.++|+||+|+.+
T Consensus 104 ~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 104 ELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred HHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 12222 123579999999999865
No 148
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.18 E-value=1.3e-10 Score=125.82 Aligned_cols=122 Identities=16% Similarity=0.304 Sum_probs=77.3
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHh
Q 012559 32 WEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDET 111 (461)
Q Consensus 32 ~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~ 111 (461)
..+.|.|+|+|+.++|||||+++|.+..+.....+..|..
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~---------------------------------------- 280 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQK---------------------------------------- 280 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccc----------------------------------------
Confidence 3578999999999999999999999876521111111110
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH
Q 012559 112 DRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD 191 (461)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~ 191 (461)
+....+.+.. ......++||||||.... ..+...++..+|.+|| |+++..+...+.
T Consensus 281 ---------i~~~~v~~~~-~~~~~kItfiDTPGhe~F-------------~~mr~rg~~~aDiaIL-VVDA~dGv~~QT 336 (742)
T CHL00189 281 ---------IGAYEVEFEY-KDENQKIVFLDTPGHEAF-------------SSMRSRGANVTDIAIL-IIAADDGVKPQT 336 (742)
T ss_pred ---------cceEEEEEEe-cCCceEEEEEECCcHHHH-------------HHHHHHHHHHCCEEEE-EEECcCCCChhh
Confidence 0000111111 123467999999996432 5667788899996555 456665443332
Q ss_pred HHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
...++.+...+.|+|+|+||+|+...
T Consensus 337 -~E~I~~~k~~~iPiIVViNKiDl~~~ 362 (742)
T CHL00189 337 -IEAINYIQAANVPIIVAINKIDKANA 362 (742)
T ss_pred -HHHHHHHHhcCceEEEEEECCCcccc
Confidence 23444555567899999999999753
No 149
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.18 E-value=3.4e-10 Score=101.10 Aligned_cols=70 Identities=17% Similarity=0.221 Sum_probs=44.7
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhC----CCCCceEEEe
Q 012559 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVD----PTGERTFGVL 210 (461)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d----~~~~rti~Vl 210 (461)
...+.++||||..+. ..+...|++++|++|++ .+++...+-..+.+..+++. ....|.++|.
T Consensus 43 ~~~~~l~D~~G~~~~-------------~~~~~~~~~~ad~~i~v-~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 108 (159)
T cd04150 43 NISFTVWDVGGQDKI-------------RPLWRHYFQNTQGLIFV-VDSNDRERIGEAREELQRMLNEDELRDAVLLVFA 108 (159)
T ss_pred CEEEEEEECCCCHhH-------------HHHHHHHhcCCCEEEEE-EeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEE
Confidence 367899999997542 55677899999965555 45443222233333333331 1247899999
Q ss_pred ccCCccCC
Q 012559 211 TKLDLMDK 218 (461)
Q Consensus 211 tK~D~~~~ 218 (461)
||.|+.+.
T Consensus 109 NK~Dl~~~ 116 (159)
T cd04150 109 NKQDLPNA 116 (159)
T ss_pred ECCCCCCC
Confidence 99998643
No 150
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.17 E-value=1.8e-10 Score=106.21 Aligned_cols=67 Identities=21% Similarity=0.319 Sum_probs=40.7
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH--HHHHHHHhCCCCCceEEEecc
Q 012559 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD--AIKLAREVDPTGERTFGVLTK 212 (461)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~--~l~l~~~~d~~~~rti~VltK 212 (461)
...+++|||||.... .......+..+|+ +++|+++......++ .+.++.. .+.+.++|+||
T Consensus 67 ~~~~~i~DtpG~~~~-------------~~~~~~~~~~~d~-vi~VvD~~~~~~~~~~~~~~~~~~---~~~~~iiv~NK 129 (192)
T cd01889 67 NLQITLVDCPGHASL-------------IRTIIGGAQIIDL-MLLVVDATKGIQTQTAECLVIGEI---LCKKLIVVLNK 129 (192)
T ss_pred CceEEEEECCCcHHH-------------HHHHHHHHhhCCE-EEEEEECCCCccHHHHHHHHHHHH---cCCCEEEEEEC
Confidence 468999999996321 1223344566775 555566655433332 2223322 36799999999
Q ss_pred CCccCC
Q 012559 213 LDLMDK 218 (461)
Q Consensus 213 ~D~~~~ 218 (461)
+|+...
T Consensus 130 ~Dl~~~ 135 (192)
T cd01889 130 IDLIPE 135 (192)
T ss_pred cccCCH
Confidence 999843
No 151
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.17 E-value=2.4e-10 Score=121.89 Aligned_cols=118 Identities=19% Similarity=0.302 Sum_probs=75.9
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHh
Q 012559 32 WEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDET 111 (461)
Q Consensus 32 ~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~ 111 (461)
..+.|.|+++|+.++|||||+++|.+..+.....+..|...
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~i--------------------------------------- 124 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHI--------------------------------------- 124 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecc---------------------------------------
Confidence 45789999999999999999999998876322111111110
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH
Q 012559 112 DRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD 191 (461)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~ 191 (461)
| ...+..++...++||||||..+. ..+..+++..+|.+||+| +++.....+
T Consensus 125 ----g----------~~~v~~~~~~~i~~iDTPGhe~F-------------~~~r~rga~~aDiaILVV-da~dgv~~q- 175 (587)
T TIGR00487 125 ----G----------AYHVENEDGKMITFLDTPGHEAF-------------TSMRARGAKVTDIVVLVV-AADDGVMPQ- 175 (587)
T ss_pred ----e----------EEEEEECCCcEEEEEECCCCcch-------------hhHHHhhhccCCEEEEEE-ECCCCCCHh-
Confidence 0 01122222237899999997654 345567888889655554 665544333
Q ss_pred HHHHHHHhCCCCCceEEEeccCCccC
Q 012559 192 AIKLAREVDPTGERTFGVLTKLDLMD 217 (461)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~ 217 (461)
....++.....+.|+|+|+||+|+.+
T Consensus 176 T~e~i~~~~~~~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 176 TIEAISHAKAANVPIIVAINKIDKPE 201 (587)
T ss_pred HHHHHHHHHHcCCCEEEEEECccccc
Confidence 22344445556789999999999864
No 152
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.16 E-value=1.1e-10 Score=104.87 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=22.6
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDF 60 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~ 60 (461)
.|+++|.++||||||+++|++..+
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~ 25 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKF 25 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 589999999999999999999876
No 153
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.16 E-value=1.8e-10 Score=103.61 Aligned_cols=104 Identities=14% Similarity=0.140 Sum_probs=57.4
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH---HHHHHHHhCCCCCceEEEecc
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD---AIKLAREVDPTGERTFGVLTK 212 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~---~l~l~~~~d~~~~rti~VltK 212 (461)
..+.++||||.... ..+...|+..+|++|++ .+.+...+-+. +...++...+ +.|.++|.||
T Consensus 49 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v-~d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK 113 (166)
T cd00877 49 IRFNVWDTAGQEKF-------------GGLRDGYYIGGQCAIIM-FDVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNK 113 (166)
T ss_pred EEEEEEECCCChhh-------------ccccHHHhcCCCEEEEE-EECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEc
Confidence 56889999997543 23445677888965554 45543322222 2223333333 6899999999
Q ss_pred CCccCCCccHHHHHhCcccccCCCeeEEEeCChhhhcccccHHH
Q 012559 213 LDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIA 256 (461)
Q Consensus 213 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (461)
+|+........ ..+ ........|+.+.+.+..++++.+..+.
T Consensus 114 ~Dl~~~~~~~~-~~~-~~~~~~~~~~e~Sa~~~~~v~~~f~~l~ 155 (166)
T cd00877 114 VDIKDRKVKAK-QIT-FHRKKNLQYYEISAKSNYNFEKPFLWLA 155 (166)
T ss_pred hhcccccCCHH-HHH-HHHHcCCEEEEEeCCCCCChHHHHHHHH
Confidence 99974332111 111 0111233566666666555555444443
No 154
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.16 E-value=1.1e-10 Score=111.21 Aligned_cols=69 Identities=20% Similarity=0.179 Sum_probs=48.2
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccC
Q 012559 134 NVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKL 213 (461)
Q Consensus 134 ~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~ 213 (461)
+...+.||||||..+. ...+..+++..|++++ |+++..+...+ ...+.+.+...+.|.++|+||+
T Consensus 62 ~~~~i~liDTPG~~~f-------------~~~~~~~l~~aD~~Il-Vvd~~~g~~~~-~~~~~~~~~~~~~P~iivvNK~ 126 (237)
T cd04168 62 EDTKVNLIDTPGHMDF-------------IAEVERSLSVLDGAIL-VISAVEGVQAQ-TRILWRLLRKLNIPTIIFVNKI 126 (237)
T ss_pred CCEEEEEEeCCCccch-------------HHHHHHHHHHhCeEEE-EEeCCCCCCHH-HHHHHHHHHHcCCCEEEEEECc
Confidence 3468999999998754 3456788899996555 55555554432 2334455555688999999999
Q ss_pred CccC
Q 012559 214 DLMD 217 (461)
Q Consensus 214 D~~~ 217 (461)
|+..
T Consensus 127 D~~~ 130 (237)
T cd04168 127 DRAG 130 (237)
T ss_pred cccC
Confidence 9874
No 155
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.16 E-value=6.6e-10 Score=100.87 Aligned_cols=69 Identities=19% Similarity=0.276 Sum_probs=44.5
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHh-C---CCCCceEEEec
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREV-D---PTGERTFGVLT 211 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~-d---~~~~rti~Vlt 211 (461)
..+.++||||..+. ..+...|+++++++|+++ |++...+-..+......+ . ..+.+.++|.|
T Consensus 57 ~~l~l~D~~G~~~~-------------~~~~~~~~~~ad~ii~v~-D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~N 122 (175)
T smart00177 57 ISFTVWDVGGQDKI-------------RPLWRHYYTNTQGLIFVV-DSNDRDRIDEAREELHRMLNEDELRDAVILVFAN 122 (175)
T ss_pred EEEEEEECCCChhh-------------HHHHHHHhCCCCEEEEEE-ECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEe
Confidence 57889999997553 567788999999755554 444322222333333322 1 13578999999
Q ss_pred cCCccCC
Q 012559 212 KLDLMDK 218 (461)
Q Consensus 212 K~D~~~~ 218 (461)
|.|+.+.
T Consensus 123 K~Dl~~~ 129 (175)
T smart00177 123 KQDLPDA 129 (175)
T ss_pred CcCcccC
Confidence 9998643
No 156
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.16 E-value=1.4e-10 Score=112.47 Aligned_cols=136 Identities=15% Similarity=0.254 Sum_probs=77.6
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 115 (461)
..|+++|++++|||||+|+|+... +...+... +.-.. ..+....|+..... . .
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~------g~i~~~g~-v~~~~------------~~~~t~~D~~~~e~------~--r 55 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFG------GAIREAGA-VKARK------------SRKHATSDWMEIEK------Q--R 55 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhc------CCcccCce-ecccc------------cCCCccCCCcHHHH------h--C
Confidence 569999999999999999998652 22222111 10000 01112234332211 1 1
Q ss_pred CCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHH
Q 012559 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (461)
Q Consensus 116 g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 195 (461)
| ..++..... + ..+...+.||||||..+. ...+..+++.+|++|+ |+++..+...+. ..+
T Consensus 56 g--~si~~~~~~--~-~~~~~~i~liDTPG~~df-------------~~~~~~~l~~aD~~Il-Vvda~~g~~~~~-~~i 115 (267)
T cd04169 56 G--ISVTSSVMQ--F-EYRDCVINLLDTPGHEDF-------------SEDTYRTLTAVDSAVM-VIDAAKGVEPQT-RKL 115 (267)
T ss_pred C--CCeEEEEEE--E-eeCCEEEEEEECCCchHH-------------HHHHHHHHHHCCEEEE-EEECCCCccHHH-HHH
Confidence 1 112222222 2 234478999999997653 3346778888997555 556655544332 234
Q ss_pred HHHhCCCCCceEEEeccCCccCC
Q 012559 196 AREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 196 ~~~~d~~~~rti~VltK~D~~~~ 218 (461)
.+.....+.|.++++||+|+...
T Consensus 116 ~~~~~~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 116 FEVCRLRGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHhcCCCEEEEEECCccCCC
Confidence 55555567899999999998643
No 157
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.16 E-value=1.7e-10 Score=108.78 Aligned_cols=155 Identities=15% Similarity=0.208 Sum_probs=86.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
..-.|++||++++|||||+++++...| +... .|+
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f-~~~~-----~~t---------------------------------------- 45 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEF-EKKY-----EPT---------------------------------------- 45 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCC-CCcc-----CCc----------------------------------------
Confidence 446899999999999999999887665 2111 010
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH--
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD-- 191 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~-- 191 (461)
.| +....+.+...+ ....+.++||||..+. ..+...|+++++++|+++ +.+...+-..
T Consensus 46 -ig----~~~~~~~~~~~~-~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~~~~ilvf-D~~~~~s~~~i~ 105 (219)
T PLN03071 46 -IG----VEVHPLDFFTNC-GKIRFYCWDTAGQEKF-------------GGLRDGYYIHGQCAIIMF-DVTARLTYKNVP 105 (219)
T ss_pred -cc----eeEEEEEEEECC-eEEEEEEEECCCchhh-------------hhhhHHHcccccEEEEEE-eCCCHHHHHHHH
Confidence 00 000111111111 2257889999997553 456677899999755554 4443322222
Q ss_pred -HHHHHHHhCCCCCceEEEeccCCccCCCccHHHHHhCcccccCCCeeEEEeCChhhhcccccHHHH
Q 012559 192 -AIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAA 257 (461)
Q Consensus 192 -~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (461)
++..++... .+.++++|.||+|+.........+ . ........|+.+...+..++++.+..+..
T Consensus 106 ~w~~~i~~~~-~~~piilvgNK~Dl~~~~v~~~~~-~-~~~~~~~~~~e~SAk~~~~i~~~f~~l~~ 169 (219)
T PLN03071 106 TWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQV-T-FHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (219)
T ss_pred HHHHHHHHhC-CCCcEEEEEEchhhhhccCCHHHH-H-HHHhcCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 222333333 368999999999986432111111 1 11122345666666655555555544433
No 158
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.16 E-value=1.5e-10 Score=104.53 Aligned_cols=120 Identities=15% Similarity=0.102 Sum_probs=71.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
+.-.|+++|++++|||||++++++..|-|.....++
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~-------------------------------------------- 38 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTI-------------------------------------------- 38 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCcc--------------------------------------------
Confidence 456799999999999999999999876212111100
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
+ ..+..+. +.+. .....+.++|++|-... ..+...|+.++|.++ +|.+++...+-....
T Consensus 39 --~--~~~~~~~--~~~~-~~~~~l~~~d~~g~~~~-------------~~~~~~~~~~~d~~l-lv~d~~~~~s~~~~~ 97 (169)
T cd01892 39 --K--PRYAVNT--VEVY-GQEKYLILREVGEDEVA-------------ILLNDAELAACDVAC-LVYDSSDPKSFSYCA 97 (169)
T ss_pred --C--cceEEEE--EEEC-CeEEEEEEEecCCcccc-------------cccchhhhhcCCEEE-EEEeCCCHHHHHHHH
Confidence 0 0000001 1111 12246789999996543 345667788999654 555554332222233
Q ss_pred HHHHHhC-CCCCceEEEeccCCccCC
Q 012559 194 KLAREVD-PTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 194 ~l~~~~d-~~~~rti~VltK~D~~~~ 218 (461)
.+.+.+. ..+.|+++|+||+|+.+.
T Consensus 98 ~~~~~~~~~~~~p~iiv~NK~Dl~~~ 123 (169)
T cd01892 98 EVYKKYFMLGEIPCLFVAAKADLDEQ 123 (169)
T ss_pred HHHHHhccCCCCeEEEEEEccccccc
Confidence 4444442 336899999999998644
No 159
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.16 E-value=2.1e-10 Score=122.79 Aligned_cols=108 Identities=17% Similarity=0.147 Sum_probs=61.0
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCc-eEEEeccCC
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGER-TFGVLTKLD 214 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~r-ti~VltK~D 214 (461)
..++|||+||..+. ...+..++.+.|. +++|++++.+...+.. +.+..+...+.+ .|+|+||+|
T Consensus 50 ~~v~~iDtPGhe~f-------------~~~~~~g~~~aD~-aILVVDa~~G~~~qT~-ehl~il~~lgi~~iIVVlNK~D 114 (581)
T TIGR00475 50 YRLGFIDVPGHEKF-------------ISNAIAGGGGIDA-ALLVVDADEGVMTQTG-EHLAVLDLLGIPHTIVVITKAD 114 (581)
T ss_pred EEEEEEECCCHHHH-------------HHHHHhhhccCCE-EEEEEECCCCCcHHHH-HHHHHHHHcCCCeEEEEEECCC
Confidence 67899999995332 3445667788895 5556677655433322 122223334667 999999999
Q ss_pred ccCCCc------cHHHHHhCcccccCCCeeEEEeCChhhhcccccHHHHH
Q 012559 215 LMDKGT------NALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAAR 258 (461)
Q Consensus 215 ~~~~~~------~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (461)
+.++.. ++.+++.+..+.....++.+...++.++++....+...
T Consensus 115 lv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l 164 (581)
T TIGR00475 115 RVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNL 164 (581)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHH
Confidence 986431 11222221111113456666666666665555444433
No 160
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.15 E-value=5.6e-10 Score=105.39 Aligned_cols=108 Identities=12% Similarity=0.065 Sum_probs=57.1
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhc-CCCeEEEEEecCCCccccHHHHHH---HHHhC-CCCCceEEEe
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE-KPSCIILAISPANQDIATSDAIKL---AREVD-PTGERTFGVL 210 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~-~~~~iIL~V~~a~~d~~~~~~l~l---~~~~d-~~~~rti~Vl 210 (461)
..+.++||||... .+...++. ++|+++ +|.+++..-+-..+..+ +.... ..+.|+|+|.
T Consensus 50 ~~l~i~Dt~G~~~---------------~~~~~~~~~~ad~ii-lV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~ 113 (221)
T cd04148 50 STLVVIDHWEQEM---------------WTEDSCMQYQGDAFV-VVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVG 113 (221)
T ss_pred EEEEEEeCCCcch---------------HHHhHHhhcCCCEEE-EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 5688999999651 11223444 788655 44555433222222222 23322 2468999999
Q ss_pred ccCCccCCCccHHHHHhCcccccCCCeeEEEeCChhhhcccccHHHHHH
Q 012559 211 TKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARR 259 (461)
Q Consensus 211 tK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (461)
||+|+........+............|+.+......++++.+..+....
T Consensus 114 NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~ 162 (221)
T cd04148 114 NKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQI 162 (221)
T ss_pred EChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 9999875432111111101112234566666666666666665555444
No 161
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.15 E-value=1.1e-10 Score=116.54 Aligned_cols=132 Identities=28% Similarity=0.386 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCccCCCCCEEEEECCCCCCHHHHHHHhhCCCC-----CccCCCccccccEEEEEeecC
Q 012559 7 LIGLINKIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDF-----LPRGSGIVTRRPLVLQLHQTE 81 (461)
Q Consensus 7 l~~~~~~lq~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnal~G~~~-----lP~~~~~~Tr~p~~i~l~~~~ 81 (461)
+-.+++++++++..+... .-.|+|+|..|+|||||+|||-|..- -|+|..-+|..|+
T Consensus 17 ~~~~~s~i~~~l~~~~~~----------~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~-------- 78 (376)
T PF05049_consen 17 LQEVVSKIREALKDIDNA----------PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPT-------- 78 (376)
T ss_dssp HHHHHHHHHHHHHHHHH------------EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-E--------
T ss_pred HHHHHHHHHHHHHHhhcC----------ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCe--------
Confidence 445677788888777542 24899999999999999999988531 1222111222221
Q ss_pred CCCcchhhhcCCCCcccChHHHHHHHHHHhhhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHH
Q 012559 82 GGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVED 161 (461)
Q Consensus 82 ~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~ 161 (461)
....|+.|+++|||+||+.... ....+.
T Consensus 79 -----------------------------------------------~Y~~p~~pnv~lWDlPG~gt~~-----f~~~~Y 106 (376)
T PF05049_consen 79 -----------------------------------------------PYPHPKFPNVTLWDLPGIGTPN-----FPPEEY 106 (376)
T ss_dssp -----------------------------------------------EEE-SS-TTEEEEEE--GGGSS-------HHHH
T ss_pred -----------------------------------------------eCCCCCCCCCeEEeCCCCCCCC-----CCHHHH
Confidence 1455788999999999986531 111111
Q ss_pred HHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCc
Q 012559 162 IENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (461)
Q Consensus 162 i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 215 (461)
+..+ -+..-|. ++++.+.. +...++ .+|+++...|.+..+|-||+|.
T Consensus 107 l~~~---~~~~yD~-fiii~s~r--f~~ndv-~La~~i~~~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 107 LKEV---KFYRYDF-FIIISSER--FTENDV-QLAKEIQRMGKKFYFVRTKVDS 153 (376)
T ss_dssp HHHT---TGGG-SE-EEEEESSS----HHHH-HHHHHHHHTT-EEEEEE--HHH
T ss_pred HHHc---cccccCE-EEEEeCCC--CchhhH-HHHHHHHHcCCcEEEEEecccc
Confidence 1111 1334564 44444433 444444 4899999899999999999996
No 162
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.14 E-value=8.6e-10 Score=100.86 Aligned_cols=68 Identities=19% Similarity=0.291 Sum_probs=43.2
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHh-CC---CCCceEEEec
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREV-DP---TGERTFGVLT 211 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~-d~---~~~rti~Vlt 211 (461)
..+.++||||..+. +.+...|++++|++|+++. ++..-.-..+.....++ .. ...|.++|.|
T Consensus 61 ~~~~l~D~~G~~~~-------------~~~~~~~~~~ad~iI~v~D-~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~N 126 (182)
T PTZ00133 61 LKFTMWDVGGQDKL-------------RPLWRHYYQNTNGLIFVVD-SNDRERIGDAREELERMLSEDELRDAVLLVFAN 126 (182)
T ss_pred EEEEEEECCCCHhH-------------HHHHHHHhcCCCEEEEEEe-CCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEe
Confidence 57899999996442 5678889999997655554 43221122222222222 21 2478999999
Q ss_pred cCCccC
Q 012559 212 KLDLMD 217 (461)
Q Consensus 212 K~D~~~ 217 (461)
|.|+.+
T Consensus 127 K~Dl~~ 132 (182)
T PTZ00133 127 KQDLPN 132 (182)
T ss_pred CCCCCC
Confidence 999864
No 163
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.14 E-value=8.7e-10 Score=100.75 Aligned_cols=113 Identities=18% Similarity=0.236 Sum_probs=70.2
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
-.+|+++|.++||||||++.++...+ +. -.|+
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~-~~------~~pt----------------------------------------- 48 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEI-VT------TIPT----------------------------------------- 48 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCC-cc------ccCC-----------------------------------------
Confidence 36899999999999999999986554 21 1121
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHH
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 194 (461)
.| +. ...++. ....+.++|+||..+ ...+...|++++|++|++ .|++....-..+..
T Consensus 49 ~g----~~--~~~~~~---~~~~~~i~D~~Gq~~-------------~~~~~~~~~~~a~~iI~V-~D~s~~~s~~~~~~ 105 (181)
T PLN00223 49 IG----FN--VETVEY---KNISFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIFV-VDSNDRDRVVEARD 105 (181)
T ss_pred cc----ee--EEEEEE---CCEEEEEEECCCCHH-------------HHHHHHHHhccCCEEEEE-EeCCcHHHHHHHHH
Confidence 01 00 001111 235689999999533 256788899999975555 45543222223332
Q ss_pred HHHHh-C---CCCCceEEEeccCCccCC
Q 012559 195 LAREV-D---PTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 195 l~~~~-d---~~~~rti~VltK~D~~~~ 218 (461)
....+ . ..+.|.++|.||.|+.+.
T Consensus 106 ~l~~~l~~~~~~~~piilv~NK~Dl~~~ 133 (181)
T PLN00223 106 ELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
T ss_pred HHHHHhcCHhhCCCCEEEEEECCCCCCC
Confidence 23322 2 135789999999998654
No 164
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.14 E-value=2e-10 Score=123.03 Aligned_cols=110 Identities=22% Similarity=0.308 Sum_probs=66.7
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhc--CCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccC
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE--KPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKL 213 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~--~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~ 213 (461)
.++.++||||..+... .... +.+.+.|+. .+| +++.|+|++. .+..+.+..++...+.|+++|+||+
T Consensus 41 ~~i~lvDtPG~~~~~~----~s~~---e~v~~~~l~~~~aD-vvI~VvDat~---ler~l~l~~ql~~~~~PiIIVlNK~ 109 (591)
T TIGR00437 41 EDIEIVDLPGIYSLTT----FSLE---EEVARDYLLNEKPD-LVVNVVDASN---LERNLYLTLQLLELGIPMILALNLV 109 (591)
T ss_pred eEEEEEECCCccccCc----cchH---HHHHHHHHhhcCCC-EEEEEecCCc---chhhHHHHHHHHhcCCCEEEEEehh
Confidence 4689999999987532 1222 344556654 566 5666667653 2334455666666789999999999
Q ss_pred CccCCCccHHHHHhCcccccCCCeeEEEeCChhhhcccccHHHH
Q 012559 214 DLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAA 257 (461)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (461)
|+.++.....+. +.....++..++.+..++..++++..+....
T Consensus 110 Dl~~~~~i~~d~-~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~ 152 (591)
T TIGR00437 110 DEAEKKGIRIDE-EKLEERLGVPVVPTSATEGRGIERLKDAIRK 152 (591)
T ss_pred HHHHhCCChhhH-HHHHHHcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 997543211111 1112234456777777777777666655443
No 165
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.14 E-value=3.6e-10 Score=123.52 Aligned_cols=156 Identities=16% Similarity=0.252 Sum_probs=90.1
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHh
Q 012559 32 WEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDET 111 (461)
Q Consensus 32 ~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~ 111 (461)
..+.|.|+|+|+.++|||||+++|.+..+.....+..|..
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~---------------------------------------- 326 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQH---------------------------------------- 326 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeee----------------------------------------
Confidence 4588999999999999999999998876521111100100
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH
Q 012559 112 DRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD 191 (461)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~ 191 (461)
.| ...+... ...++||||||...+ ..+..+++...|++|| |+++......+.
T Consensus 327 ---ig----------a~~v~~~-~~~ItfiDTPGhe~F-------------~~m~~rga~~aDiaIL-VVdAddGv~~qT 378 (787)
T PRK05306 327 ---IG----------AYQVETN-GGKITFLDTPGHEAF-------------TAMRARGAQVTDIVVL-VVAADDGVMPQT 378 (787)
T ss_pred ---cc----------EEEEEEC-CEEEEEEECCCCccc-------------hhHHHhhhhhCCEEEE-EEECCCCCCHhH
Confidence 00 0112111 256899999997654 4566678888896554 556665443332
Q ss_pred HHHHHHHhCCCCCceEEEeccCCccCCCc-cHHHHHh-Cccccc----CCCeeEEEeCChhhhcccccHHH
Q 012559 192 AIKLAREVDPTGERTFGVLTKLDLMDKGT-NALEVLE-GRSYRL----QHPWVGIVNRSQADINKNVDMIA 256 (461)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~~~-~~~~~l~-~~~~~l----~~g~~~v~~~s~~~~~~~~~~~~ 256 (461)
...++.+...+.|+|+|+||+|+..... ....-+. ...... ...++.+......++...++.+.
T Consensus 379 -~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~ 448 (787)
T PRK05306 379 -IEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAIL 448 (787)
T ss_pred -HHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhh
Confidence 2334455556789999999999964321 1222111 111111 13355666655556655554443
No 166
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.14 E-value=1.4e-09 Score=111.00 Aligned_cols=39 Identities=23% Similarity=0.259 Sum_probs=31.6
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEE
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLV 74 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~ 74 (461)
.+|++||.+|+|||||+|+|++.++-......||+.|+.
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~ 40 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNV 40 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeee
Confidence 479999999999999999999987633344458877764
No 167
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.14 E-value=6.8e-10 Score=106.50 Aligned_cols=105 Identities=11% Similarity=0.082 Sum_probs=56.2
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHh------------CCCC
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREV------------DPTG 203 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~------------d~~~ 203 (461)
..+.|+||||.... ..+...|+.++|++|+ |.+.+...+-+....+..++ ...+
T Consensus 48 ~~l~I~Dt~G~~~~-------------~~~~~~~~~~ad~iIl-Vfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~ 113 (247)
T cd04143 48 YQLDILDTSGNHPF-------------PAMRRLSILTGDVFIL-VFSLDNRESFEEVCRLREQILETKSCLKNKTKENVK 113 (247)
T ss_pred EEEEEEECCCChhh-------------hHHHHHHhccCCEEEE-EEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCC
Confidence 57889999996543 3455567888896555 44444322222222333333 1236
Q ss_pred CceEEEeccCCccCCCc-cHHHHHhCcccccCCCeeEEEeCChhhhcccccH
Q 012559 204 ERTFGVLTKLDLMDKGT-NALEVLEGRSYRLQHPWVGIVNRSQADINKNVDM 254 (461)
Q Consensus 204 ~rti~VltK~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~ 254 (461)
.++|+|.||+|+..... ...++.+-........|+.+......++++.+..
T Consensus 114 ~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~ 165 (247)
T cd04143 114 IPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRA 165 (247)
T ss_pred CcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHH
Confidence 89999999999975322 2222211000111234666666655555544433
No 168
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.13 E-value=2.4e-10 Score=103.18 Aligned_cols=68 Identities=18% Similarity=0.202 Sum_probs=42.1
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH----HHHHHHHhCCCCCceEEEec
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD----AIKLAREVDPTGERTFGVLT 211 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~----~l~l~~~~d~~~~rti~Vlt 211 (461)
..+.++||||.... ..+...++.++|++|+++ +.+..-+-.. ++..++...+ +.|+|+|.|
T Consensus 46 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~-d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~n 110 (174)
T smart00174 46 VELGLWDTAGQEDY-------------DRLRPLSYPDTDVFLICF-SVDSPASFENVKEKWYPEVKHFCP-NTPIILVGT 110 (174)
T ss_pred EEEEEEECCCCccc-------------chhchhhcCCCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEec
Confidence 46889999996543 334556788888655554 4443211111 2222333333 689999999
Q ss_pred cCCccCC
Q 012559 212 KLDLMDK 218 (461)
Q Consensus 212 K~D~~~~ 218 (461)
|+|+..+
T Consensus 111 K~Dl~~~ 117 (174)
T smart00174 111 KLDLRED 117 (174)
T ss_pred ChhhhhC
Confidence 9999753
No 169
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.12 E-value=4.1e-10 Score=103.04 Aligned_cols=115 Identities=17% Similarity=0.207 Sum_probs=67.9
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhcC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 116 (461)
.|+|+|.+++|||||++++++..| +... .|+...
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~-~~~~-----~~t~~~---------------------------------------- 35 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKF-PEEY-----VPTVFE---------------------------------------- 35 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcC-CCCC-----CCeeee----------------------------------------
Confidence 699999999999999999999875 3221 121000
Q ss_pred CCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH----H
Q 012559 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD----A 192 (461)
Q Consensus 117 ~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~----~ 192 (461)
.+ ...+.........+.++||||.... ..+...|++++|++| +|.+.+...+-.. +
T Consensus 36 ---~~---~~~i~~~~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~ad~ii-~v~d~~~~~s~~~~~~~~ 95 (187)
T cd04132 36 ---NY---VTNIQGPNGKIIELALWDTAGQEEY-------------DRLRPLSYPDVDVLL-ICYAVDNPTSLDNVEDKW 95 (187)
T ss_pred ---ee---EEEEEecCCcEEEEEEEECCCchhH-------------HHHHHHhCCCCCEEE-EEEECCCHHHHHHHHHHH
Confidence 00 0001111122346889999995432 445666889999655 4445543222222 2
Q ss_pred HHHHHHhCCCCCceEEEeccCCccCC
Q 012559 193 IKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
+...+... .+.|.|+|.||.|+...
T Consensus 96 ~~~~~~~~-~~~piilv~nK~Dl~~~ 120 (187)
T cd04132 96 FPEVNHFC-PGTPIMLVGLKTDLRKD 120 (187)
T ss_pred HHHHHHhC-CCCCEEEEEeChhhhhC
Confidence 22223222 36899999999998753
No 170
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=1.3e-10 Score=103.45 Aligned_cols=156 Identities=19% Similarity=0.263 Sum_probs=90.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhh
Q 012559 33 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (461)
Q Consensus 33 ~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~ 112 (461)
.+.-.||++|+||+|||||++...-..| -+.. .||
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~f-d~~Y-----qAT--------------------------------------- 54 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKF-DNTY-----QAT--------------------------------------- 54 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhh-cccc-----cce---------------------------------------
Confidence 3556899999999999999999998776 1110 000
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHH
Q 012559 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (461)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~ 192 (461)
.| ..|-.+. +.+.+ ....|.||||.|..+. +.++-+|++++.. +++|-+.+..-+-+..
T Consensus 55 --IG--iDFlskt--~~l~d-~~vrLQlWDTAGQERF-------------rslipsY~Rds~v-aviVyDit~~~Sfe~t 113 (221)
T KOG0094|consen 55 --IG--IDFLSKT--MYLED-RTVRLQLWDTAGQERF-------------RSLIPSYIRDSSV-AVIVYDITDRNSFENT 113 (221)
T ss_pred --ee--eEEEEEE--EEEcC-cEEEEEEEecccHHHH-------------hhhhhhhccCCeE-EEEEEeccccchHHHH
Confidence 11 2222222 22333 2468999999997664 8999999999985 4444444332222222
Q ss_pred HHHHHHh---C-CCCCceEEEeccCCccCCCccHHHHHhCc--ccccCCCeeEEEeCChhhhcccccHHH
Q 012559 193 IKLAREV---D-PTGERTFGVLTKLDLMDKGTNALEVLEGR--SYRLQHPWVGIVNRSQADINKNVDMIA 256 (461)
Q Consensus 193 l~l~~~~---d-~~~~rti~VltK~D~~~~~~~~~~~l~~~--~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (461)
-+++..+ . ..+..+++|-||-|+.++..- ...+|+ ...++.-|..+....+.++...+..+.
T Consensus 114 ~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqv--s~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIa 181 (221)
T KOG0094|consen 114 SKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQV--SIEEGERKAKELNAEFIETSAKAGENVKQLFRRIA 181 (221)
T ss_pred HHHHHHHHhccCCCceEEEEEcccccccchhhh--hHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHH
Confidence 2333333 2 234667789999999987521 111121 223334466666665555554443333
No 171
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=5.6e-09 Score=108.71 Aligned_cols=167 Identities=19% Similarity=0.281 Sum_probs=105.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
+.-.|++.|+.|+||||++||++-.++||.|.+.||.|-.+|.= ++....+....+.++ -.|..-+...+..-...
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~Veg--adG~e~vl~~~~s~e--k~d~~ti~~~~haL~~~ 183 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEG--ADGAEAVLATEGSEE--KIDMKTINQLAHALKPD 183 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecc--cCCcceeeccCCCcc--cccHHHHhHHHHhcCcc
Confidence 45789999999999999999999999999999999999886652 222222221111111 11222221111100000
Q ss_pred hcCCCCcccCccEEEEEecCCC------CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcc
Q 012559 114 ITGKSKQISNIPIQLSIYSPNV------VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI 187 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~------~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~ 187 (461)
+. -....-+.|+.|+. -++.++|.||+.-.+. ....+.++..++| ++++|+.|...+
T Consensus 184 -----~~-~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se----------~tswid~~cldaD-VfVlV~NaEntl 246 (749)
T KOG0448|consen 184 -----KD-LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSE----------LTSWIDSFCLDAD-VFVLVVNAENTL 246 (749)
T ss_pred -----cc-cCcceEEEEEecCccchhhhccceeccCCCCCCchh----------hhHHHHHHhhcCC-eEEEEecCccHh
Confidence 00 11233456776665 4899999999976431 1567888999999 566666776666
Q ss_pred ccHHHHHHHHHhCCCCCceEEEeccCCccCCCccH
Q 012559 188 ATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNA 222 (461)
Q Consensus 188 ~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~ 222 (461)
+.++- ++...+......+.++.||+|......++
T Consensus 247 t~sek-~Ff~~vs~~KpniFIlnnkwDasase~ec 280 (749)
T KOG0448|consen 247 TLSEK-QFFHKVSEEKPNIFILNNKWDASASEPEC 280 (749)
T ss_pred HHHHH-HHHHHhhccCCcEEEEechhhhhcccHHH
Confidence 55443 46666666555667788899998665444
No 172
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.11 E-value=4.9e-10 Score=96.87 Aligned_cols=70 Identities=16% Similarity=0.202 Sum_probs=46.1
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHH----HHHHhCCCCCceEEEec
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK----LAREVDPTGERTFGVLT 211 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~----l~~~~d~~~~rti~Vlt 211 (461)
..++++|+||.... ......++...+. +++|.+++.+........ ........+.++++|+|
T Consensus 45 ~~~~l~D~~g~~~~-------------~~~~~~~~~~~~~-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~n 110 (157)
T cd00882 45 VKLQIWDTAGQERF-------------RSLRRLYYRGADG-IILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGN 110 (157)
T ss_pred EEEEEEecCChHHH-------------HhHHHHHhcCCCE-EEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEe
Confidence 57899999997763 2233677888885 455556654433333221 23344556899999999
Q ss_pred cCCccCCC
Q 012559 212 KLDLMDKG 219 (461)
Q Consensus 212 K~D~~~~~ 219 (461)
|+|+....
T Consensus 111 k~D~~~~~ 118 (157)
T cd00882 111 KIDLPEER 118 (157)
T ss_pred cccccccc
Confidence 99998654
No 173
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.10 E-value=1.1e-09 Score=95.76 Aligned_cols=29 Identities=24% Similarity=0.473 Sum_probs=24.9
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGS 65 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~ 65 (461)
.+|+++|.++||||||+|+|++.. +|...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~ 30 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEY 30 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcC
Confidence 579999999999999999999987 45443
No 174
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.10 E-value=3.9e-10 Score=103.19 Aligned_cols=66 Identities=21% Similarity=0.265 Sum_probs=42.3
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccH---HHHHHHHHhCCCCCceEEEecc
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DAIKLAREVDPTGERTFGVLTK 212 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~---~~l~l~~~~d~~~~rti~VltK 212 (461)
..|.++||+|.... ..+...|+++++++++++ +.+...+-. .++..++...+...+ |+|.||
T Consensus 49 ~~l~iwDt~G~~~~-------------~~~~~~~~~~a~~iilv~-D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK 113 (182)
T cd04128 49 ITFSIWDLGGQREF-------------INMLPLVCNDAVAILFMF-DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTK 113 (182)
T ss_pred EEEEEEeCCCchhH-------------HHhhHHHCcCCCEEEEEE-ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEc
Confidence 57889999996543 456778999999655554 444322222 233344444454445 789999
Q ss_pred CCcc
Q 012559 213 LDLM 216 (461)
Q Consensus 213 ~D~~ 216 (461)
+|+.
T Consensus 114 ~Dl~ 117 (182)
T cd04128 114 YDLF 117 (182)
T ss_pred hhcc
Confidence 9996
No 175
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.10 E-value=4.8e-10 Score=101.85 Aligned_cols=114 Identities=19% Similarity=0.214 Sum_probs=69.5
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhcC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 116 (461)
.|++||+.++|||||++++++..| |... .|+ .|
T Consensus 3 ki~vvG~~~vGKTsl~~~~~~~~f-~~~~-----~pt-----------------------------------------~~ 35 (175)
T cd01874 3 KCVVVGDGAVGKTCLLISYTTNKF-PSEY-----VPT-----------------------------------------VF 35 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CCCC-----CCc-----------------------------------------ee
Confidence 699999999999999999998776 3221 111 00
Q ss_pred CCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH----H
Q 012559 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD----A 192 (461)
Q Consensus 117 ~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~----~ 192 (461)
..+. ..+.+. .....+.|+||||..+. ..+...|+++++++|+++.-.+ ..+-.. +
T Consensus 36 --~~~~---~~~~~~-~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~a~~~ilv~d~~~-~~s~~~~~~~w 95 (175)
T cd01874 36 --DNYA---VTVMIG-GEPYTLGLFDTAGQEDY-------------DRLRPLSYPQTDVFLVCFSVVS-PSSFENVKEKW 95 (175)
T ss_pred --eeeE---EEEEEC-CEEEEEEEEECCCccch-------------hhhhhhhcccCCEEEEEEECCC-HHHHHHHHHHH
Confidence 0000 111111 12256889999997653 3455678899997666654333 212111 2
Q ss_pred HHHHHHhCCCCCceEEEeccCCccCC
Q 012559 193 IKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
...++...+ +.|.|+|.||+|+.+.
T Consensus 96 ~~~i~~~~~-~~piilvgnK~Dl~~~ 120 (175)
T cd01874 96 VPEITHHCP-KTPFLLVGTQIDLRDD 120 (175)
T ss_pred HHHHHHhCC-CCCEEEEEECHhhhhC
Confidence 323333333 5899999999998654
No 176
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.10 E-value=1e-09 Score=106.93 Aligned_cols=138 Identities=19% Similarity=0.303 Sum_probs=76.1
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccc-cccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT-RRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~T-r~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
-.|+|||..|+|||||+|+|++..+.+.+..... ..+.
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~----------------------------------------- 43 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHI----------------------------------------- 43 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCcccccc-----------------------------------------
Confidence 3799999999999999999999987544322110 0000
Q ss_pred cCCCCcccCccEEEEEecC-CCCCcEEEeCCCCCccccC-CCCccHHHHHHHHHHHHh------------c--CCCeEEE
Q 012559 115 TGKSKQISNIPIQLSIYSP-NVVNLTLIDLPGLTKVAVE-GQPESIVEDIENMVRSYV------------E--KPSCIIL 178 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p-~~~~l~lvDtPGi~~~~~~-~~~~~~~~~i~~~v~~yi------------~--~~~~iIL 178 (461)
..+.+-......+... ....|++|||||+...... .+-..+.+.+.+.-..|+ . ..++++.
T Consensus 44 ---~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly 120 (276)
T cd01850 44 ---DKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLY 120 (276)
T ss_pred ---CCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEE
Confidence 0000011111112211 1247999999999765321 111122222223222333 2 2344444
Q ss_pred EEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 179 AISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 179 ~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
++.+....+...+ +++++.+.. +.++|+|+||+|++.+.
T Consensus 121 ~i~~~~~~l~~~D-~~~lk~l~~-~v~vi~VinK~D~l~~~ 159 (276)
T cd01850 121 FIEPTGHGLKPLD-IEFMKRLSK-RVNIIPVIAKADTLTPE 159 (276)
T ss_pred EEeCCCCCCCHHH-HHHHHHHhc-cCCEEEEEECCCcCCHH
Confidence 4444444554444 457777765 78999999999998643
No 177
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.10 E-value=2.9e-10 Score=110.51 Aligned_cols=70 Identities=19% Similarity=0.252 Sum_probs=47.7
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccC
Q 012559 134 NVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKL 213 (461)
Q Consensus 134 ~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~ 213 (461)
+...+++|||||..+. ...+..++..+|+++ +|+++..+...+ ...+.+.+...+.|.++|+||+
T Consensus 62 ~~~~i~liDtPG~~~f-------------~~~~~~~l~~aD~~i-~Vvd~~~g~~~~-~~~~~~~~~~~~~p~iivvNK~ 126 (268)
T cd04170 62 KGHKINLIDTPGYADF-------------VGETRAALRAADAAL-VVVSAQSGVEVG-TEKLWEFADEAGIPRIIFINKM 126 (268)
T ss_pred CCEEEEEEECcCHHHH-------------HHHHHHHHHHCCEEE-EEEeCCCCCCHH-HHHHHHHHHHcCCCEEEEEECC
Confidence 3467999999997542 345677888889644 555665544332 2234455556688999999999
Q ss_pred CccCC
Q 012559 214 DLMDK 218 (461)
Q Consensus 214 D~~~~ 218 (461)
|....
T Consensus 127 D~~~~ 131 (268)
T cd04170 127 DRERA 131 (268)
T ss_pred ccCCC
Confidence 98754
No 178
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.09 E-value=9.5e-10 Score=108.87 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=29.2
Q ss_pred EEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEE
Q 012559 38 VAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLV 74 (461)
Q Consensus 38 IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~ 74 (461)
|++||.+|+|||||+|+|++..+-......||+.|+.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~ 37 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNV 37 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCcccccee
Confidence 5899999999999999999987633333457877764
No 179
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.09 E-value=6.3e-10 Score=104.76 Aligned_cols=67 Identities=16% Similarity=0.202 Sum_probs=49.4
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCC
Q 012559 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (461)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 214 (461)
...+.||||||..+. ...+..++..+|+++ +|+++..+...+. ..+++.....+.+.|+|+||+|
T Consensus 72 ~~~i~iiDTPG~~~f-------------~~~~~~~l~~aD~~i-lVvD~~~g~~~~t-~~~l~~~~~~~~p~ilviNKiD 136 (222)
T cd01885 72 EYLINLIDSPGHVDF-------------SSEVTAALRLCDGAL-VVVDAVEGVCVQT-ETVLRQALKERVKPVLVINKID 136 (222)
T ss_pred ceEEEEECCCCcccc-------------HHHHHHHHHhcCeeE-EEEECCCCCCHHH-HHHHHHHHHcCCCEEEEEECCC
Confidence 467899999998765 456788999999655 4556665554443 3455666556789999999999
Q ss_pred cc
Q 012559 215 LM 216 (461)
Q Consensus 215 ~~ 216 (461)
+.
T Consensus 137 ~~ 138 (222)
T cd01885 137 RL 138 (222)
T ss_pred cc
Confidence 86
No 180
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.08 E-value=1.4e-09 Score=102.51 Aligned_cols=68 Identities=15% Similarity=0.127 Sum_probs=43.0
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHH---HHHHHHhCCCCCceEEEecc
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA---IKLAREVDPTGERTFGVLTK 212 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~---l~l~~~~d~~~~rti~VltK 212 (461)
.++.||||||.... ..+...|+++++++| +|.+.+...+-... ...+.+....+.++|+|.||
T Consensus 44 ~~l~iwDt~G~e~~-------------~~l~~~~~~~ad~~I-lV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK 109 (220)
T cd04126 44 YNISIWDTAGREQF-------------HGLGSMYCRGAAAVI-LTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNK 109 (220)
T ss_pred EEEEEEeCCCcccc-------------hhhHHHHhccCCEEE-EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEC
Confidence 46899999997553 456678899999655 45555432222221 11122233346789999999
Q ss_pred CCccC
Q 012559 213 LDLMD 217 (461)
Q Consensus 213 ~D~~~ 217 (461)
+|+.+
T Consensus 110 ~DL~~ 114 (220)
T cd04126 110 LDLTE 114 (220)
T ss_pred ccccc
Confidence 99975
No 181
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.08 E-value=2.7e-09 Score=96.14 Aligned_cols=114 Identities=21% Similarity=0.355 Sum_probs=68.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
.-.+|+++|.++||||||+++|.|..+ + +..|+
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~-~------~~~~t---------------------------------------- 45 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDI-S------HITPT---------------------------------------- 45 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCC-c------ccCCC----------------------------------------
Confidence 458899999999999999999999754 1 01111
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
.| +... . +.. ....+.++|+||.... ..++..|++++++++++ .++.....-....
T Consensus 46 -~g----~~~~--~--i~~-~~~~~~~~D~~G~~~~-------------~~~~~~~~~~~~~ii~v-~D~~~~~~~~~~~ 101 (173)
T cd04155 46 -QG----FNIK--T--VQS-DGFKLNVWDIGGQRAI-------------RPYWRNYFENTDCLIYV-IDSADKKRLEEAG 101 (173)
T ss_pred -CC----cceE--E--EEE-CCEEEEEEECCCCHHH-------------HHHHHHHhcCCCEEEEE-EeCCCHHHHHHHH
Confidence 01 0000 1 111 1356889999996432 45677888999965554 4444211111111
Q ss_pred ----HHHHHhCCCCCceEEEeccCCccCC
Q 012559 194 ----KLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 194 ----~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
.+.+.....+.|+++|+||+|+.+.
T Consensus 102 ~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 130 (173)
T cd04155 102 AELVELLEEEKLAGVPVLVFANKQDLATA 130 (173)
T ss_pred HHHHHHHhChhhcCCCEEEEEECCCCccC
Confidence 1222222346899999999998754
No 182
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.07 E-value=7.9e-10 Score=103.73 Aligned_cols=67 Identities=18% Similarity=0.285 Sum_probs=45.8
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCC
Q 012559 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (461)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 214 (461)
...+.+|||||..+. ...+..++..+|++++++ ++....... ...+.+.+...+.+.++|+||+|
T Consensus 70 ~~~i~iiDtpG~~~f-------------~~~~~~~~~~aD~~llVv-D~~~~~~~~-~~~~~~~~~~~~~p~iiviNK~D 134 (213)
T cd04167 70 SYLFNIIDTPGHVNF-------------MDEVAAALRLSDGVVLVV-DVVEGVTSN-TERLIRHAILEGLPIVLVINKID 134 (213)
T ss_pred EEEEEEEECCCCcch-------------HHHHHHHHHhCCEEEEEE-ECCCCCCHH-HHHHHHHHHHcCCCEEEEEECcc
Confidence 367899999997654 355778889999755555 554443332 22344444445689999999999
Q ss_pred cc
Q 012559 215 LM 216 (461)
Q Consensus 215 ~~ 216 (461)
+.
T Consensus 135 ~~ 136 (213)
T cd04167 135 RL 136 (213)
T ss_pred cC
Confidence 86
No 183
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.07 E-value=1e-09 Score=117.65 Aligned_cols=132 Identities=20% Similarity=0.290 Sum_probs=78.5
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
+..|+++|+.++|||||+++|+... +..+++.. +..+.|....+ +.
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~------g~i~~~~~--------------------~~~~~D~~~~E--------re 48 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYT------GAISEREM--------------------REQVLDSMDLE--------RE 48 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHc------CCCccccc--------------------cccccCCChHH--------Hh
Confidence 4679999999999999999999753 22222210 01111111111 11
Q ss_pred cCCCCcccCccEEEEEe--cCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHH
Q 012559 115 TGKSKQISNIPIQLSIY--SPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~--~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~ 192 (461)
.| .++....+.+... ......+.||||||..+. ...+..|+..+|++ ++|++++.+...+..
T Consensus 49 rG--iTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF-------------~~~v~~~l~~aD~a-ILVvDat~g~~~qt~ 112 (595)
T TIGR01393 49 RG--ITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF-------------SYEVSRSLAACEGA-LLLVDAAQGIEAQTL 112 (595)
T ss_pred cC--CCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH-------------HHHHHHHHHhCCEE-EEEecCCCCCCHhHH
Confidence 12 2333344444433 223367899999998764 45677899999964 556677665544443
Q ss_pred HHHHHHhCCCCCceEEEeccCCccC
Q 012559 193 IKLAREVDPTGERTFGVLTKLDLMD 217 (461)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~ 217 (461)
..+.... ..+.+.|+|+||+|+..
T Consensus 113 ~~~~~~~-~~~ipiIiViNKiDl~~ 136 (595)
T TIGR01393 113 ANVYLAL-ENDLEIIPVINKIDLPS 136 (595)
T ss_pred HHHHHHH-HcCCCEEEEEECcCCCc
Confidence 2222222 24678999999999864
No 184
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.07 E-value=9.5e-10 Score=115.36 Aligned_cols=125 Identities=22% Similarity=0.249 Sum_probs=79.3
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCC-ccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
.+|+|+|.+|+||||++|+|+|...+.++.. .+|....++.
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~-------------------------------------- 160 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIE-------------------------------------- 160 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEE--------------------------------------
Confidence 5799999999999999999999987655431 2232221111
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcC--CCeEEEEEecCCC---cccc
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEK--PSCIILAISPANQ---DIAT 189 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~--~~~iIL~V~~a~~---d~~~ 189 (461)
...+...+.+|||||+..... .....+.+...+..++.. +| ++|+|..... +...
T Consensus 161 ----------------~~idG~~L~VIDTPGL~dt~~---dq~~neeILk~Ik~~Lsk~gpD-VVLlV~RLd~~~~D~eD 220 (763)
T TIGR00993 161 ----------------GLVQGVKIRVIDTPGLKSSAS---DQSKNEKILSSVKKFIKKNPPD-IVLYVDRLDMQTRDSND 220 (763)
T ss_pred ----------------EEECCceEEEEECCCCCcccc---chHHHHHHHHHHHHHHhcCCCC-EEEEEEeCCCccccHHH
Confidence 001236789999999998532 123444566667778774 66 6777765432 2222
Q ss_pred HHHHHHHHHhCC--CCCceEEEeccCCccCC
Q 012559 190 SDAIKLAREVDP--TGERTFGVLTKLDLMDK 218 (461)
Q Consensus 190 ~~~l~l~~~~d~--~~~rti~VltK~D~~~~ 218 (461)
..+++.+.++-. .-..+|+|+|+.|...+
T Consensus 221 ~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 221 LPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 234444443322 24789999999999964
No 185
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.07 E-value=6.1e-10 Score=103.72 Aligned_cols=67 Identities=18% Similarity=0.184 Sum_probs=39.8
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCc-ccc--HHHHHHHHHhCCCCCceEEEecc
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IAT--SDAIKLAREVDPTGERTFGVLTK 212 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d-~~~--~~~l~l~~~~d~~~~rti~VltK 212 (461)
..++||||||... +...+..++.+.|. +++|+++... ... ...+..+... ...+.|+|+||
T Consensus 83 ~~i~~iDtPG~~~-------------~~~~~~~~~~~~D~-~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK 146 (203)
T cd01888 83 RHVSFVDCPGHEI-------------LMATMLSGAAVMDG-ALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNK 146 (203)
T ss_pred cEEEEEECCChHH-------------HHHHHHHhhhcCCE-EEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEc
Confidence 5789999999422 23445666677885 4555555542 222 2233333222 12468999999
Q ss_pred CCccCC
Q 012559 213 LDLMDK 218 (461)
Q Consensus 213 ~D~~~~ 218 (461)
+|+.++
T Consensus 147 ~Dl~~~ 152 (203)
T cd01888 147 IDLVKE 152 (203)
T ss_pred hhccCH
Confidence 999753
No 186
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.05 E-value=1.1e-09 Score=101.77 Aligned_cols=107 Identities=14% Similarity=0.159 Sum_probs=63.9
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH---HHHHHHHhCCCCCceEEEecc
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD---AIKLAREVDPTGERTFGVLTK 212 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~---~l~l~~~~d~~~~rti~VltK 212 (461)
..+.|+||||..+. ..+...|+++++++|++ .+.....+-.. +...+++.. .+.+.++|.||
T Consensus 44 ~~l~iwDt~G~e~~-------------~~l~~~~~~~ad~~ilV-~D~t~~~S~~~i~~w~~~i~~~~-~~~piilvgNK 108 (200)
T smart00176 44 IRFNVWDTAGQEKF-------------GGLRDGYYIQGQCAIIM-FDVTARVTYKNVPNWHRDLVRVC-ENIPIVLCGNK 108 (200)
T ss_pred EEEEEEECCCchhh-------------hhhhHHHhcCCCEEEEE-EECCChHHHHHHHHHHHHHHHhC-CCCCEEEEEEC
Confidence 57889999997553 56778899999965544 45544333222 233333333 36899999999
Q ss_pred CCccCCCccHHHHHhCcccccCCCeeEEEeCChhhhcccccHHHHHH
Q 012559 213 LDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARR 259 (461)
Q Consensus 213 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (461)
+|+....... +.+. ........|+.+...+..++.+.+..+....
T Consensus 109 ~Dl~~~~v~~-~~~~-~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 109 VDVKDRKVKA-KSIT-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred cccccccCCH-HHHH-HHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9986432111 1111 1122345677777777666666665554433
No 187
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.04 E-value=2.2e-09 Score=99.99 Aligned_cols=116 Identities=19% Similarity=0.300 Sum_probs=69.6
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 115 (461)
|.|+++|.++||||||++.|++..+-+....+ .+...
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~---~~~~~---------------------------------------- 37 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTVTSI---EPNVA---------------------------------------- 37 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCccCcE---eecce----------------------------------------
Confidence 78999999999999999999988652211110 11000
Q ss_pred CCCCcccCccEEEEEec-CCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCC-CeEEEEEecCCCccccHHHH
Q 012559 116 GKSKQISNIPIQLSIYS-PNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKP-SCIILAISPANQDIATSDAI 193 (461)
Q Consensus 116 g~~~~~s~~~i~l~i~~-p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~-~~iIL~V~~a~~d~~~~~~l 193 (461)
...... .....+.+||+||..+. +.+...|+++. +++|+++......-...++.
T Consensus 38 -----------~~~~~~~~~~~~~~l~D~pG~~~~-------------~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~ 93 (203)
T cd04105 38 -----------TFILNSEGKGKKFRLVDVPGHPKL-------------RDKLLETLKNSAKGIVFVVDSATFQKNLKDVA 93 (203)
T ss_pred -----------EEEeecCCCCceEEEEECCCCHHH-------------HHHHHHHHhccCCEEEEEEECccchhHHHHHH
Confidence 000000 12356899999997653 55667788887 87665555544211112211
Q ss_pred HH----HH--HhCCCCCceEEEeccCCccCC
Q 012559 194 KL----AR--EVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 194 ~l----~~--~~d~~~~rti~VltK~D~~~~ 218 (461)
.. .. .....+.|+++|+||.|+...
T Consensus 94 ~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 94 EFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred HHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 11 11 112347899999999998753
No 188
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.04 E-value=1.8e-09 Score=97.47 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=23.1
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDF 60 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~ 60 (461)
..|+++|+++||||||++++.+..|
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~ 26 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF 26 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5799999999999999999999865
No 189
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.02 E-value=3.9e-09 Score=95.17 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDF 60 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~ 60 (461)
.|+++|.+++|||||++++++..|
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~ 25 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAF 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 589999999999999999998876
No 190
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.02 E-value=1.7e-09 Score=116.23 Aligned_cols=109 Identities=18% Similarity=0.197 Sum_probs=58.7
Q ss_pred CCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCc-eEEEec
Q 012559 133 PNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGER-TFGVLT 211 (461)
Q Consensus 133 p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~r-ti~Vlt 211 (461)
++...++||||||..+. +.. +..++...|. +++|++++.++..++.. .+..+...+.+ .|+|+|
T Consensus 48 ~~g~~i~~IDtPGhe~f------------i~~-m~~g~~~~D~-~lLVVda~eg~~~qT~e-hl~il~~lgi~~iIVVlN 112 (614)
T PRK10512 48 PDGRVLGFIDVPGHEKF------------LSN-MLAGVGGIDH-ALLVVACDDGVMAQTRE-HLAILQLTGNPMLTVALT 112 (614)
T ss_pred CCCcEEEEEECCCHHHH------------HHH-HHHHhhcCCE-EEEEEECCCCCcHHHHH-HHHHHHHcCCCeEEEEEE
Confidence 34456899999996332 233 4566788885 45566777665544322 22333333555 579999
Q ss_pred cCCccCCCc--c----HHHHHhCcccccCCCeeEEEeCChhhhcccccHHHH
Q 012559 212 KLDLMDKGT--N----ALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAA 257 (461)
Q Consensus 212 K~D~~~~~~--~----~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (461)
|+|+.++.. . +.+.+.+... ....++.+...++.+++...+.+..
T Consensus 113 KiDlv~~~~~~~v~~ei~~~l~~~~~-~~~~ii~VSA~tG~gI~~L~~~L~~ 163 (614)
T PRK10512 113 KADRVDEARIAEVRRQVKAVLREYGF-AEAKLFVTAATEGRGIDALREHLLQ 163 (614)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEeCCCCCCCHHHHHHHHH
Confidence 999985421 1 1122211000 0134555666666565555554443
No 191
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.02 E-value=8.4e-10 Score=120.91 Aligned_cols=134 Identities=13% Similarity=0.174 Sum_probs=81.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
++..|+|+|+.++|||||+|+|++.. +... .... .. .+....|+.... +
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~------g~~~-~~~~-----~~-----------~g~~~~D~~~~e--------~ 57 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYT------GRIH-KIGE-----VH-----------DGAATMDWMEQE--------K 57 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhC------CCcc-cccc-----cc-----------CCccccCCCHHH--------H
Confidence 57899999999999999999998642 1111 1100 00 011222322211 1
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
..| ++-+.....+.. +...++||||||..+. ...+..++...|+ +++|+++..+...++.
T Consensus 58 ~rg----iti~~~~~~~~~-~~~~i~liDTPG~~~~-------------~~~~~~~l~~~D~-~ilVvda~~g~~~~~~- 117 (689)
T TIGR00484 58 ERG----ITITSAATTVFW-KGHRINIIDTPGHVDF-------------TVEVERSLRVLDG-AVAVLDAVGGVQPQSE- 117 (689)
T ss_pred hcC----CCEecceEEEEE-CCeEEEEEECCCCcch-------------hHHHHHHHHHhCE-EEEEEeCCCCCChhHH-
Confidence 112 222222233333 3478999999999764 2346788888885 5555667665554433
Q ss_pred HHHHHhCCCCCceEEEeccCCccCC
Q 012559 194 KLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
.+++.+...+.|.++|+||+|+...
T Consensus 118 ~~~~~~~~~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 118 TVWRQANRYEVPRIAFVNKMDKTGA 142 (689)
T ss_pred HHHHHHHHcCCCEEEEEECCCCCCC
Confidence 3556666668999999999999853
No 192
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.01 E-value=2.2e-09 Score=115.15 Aligned_cols=133 Identities=18% Similarity=0.258 Sum_probs=78.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
+...|+++|+.++|||||+++|+... |..++... +..+.|..+.+ +
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~t------g~i~~~~~--------------------~~~~lD~~~~E--------r 51 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELT------GTLSEREM--------------------KAQVLDSMDLE--------R 51 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhc------CCCccccc--------------------ccccccCchHH--------h
Confidence 56789999999999999999998642 22221110 01122222111 1
Q ss_pred hcCCCCcccCccEEEEEec--CCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH
Q 012559 114 ITGKSKQISNIPIQLSIYS--PNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD 191 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~--p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~ 191 (461)
..| .++....+.+.... .....++||||||..+. ...+.+++..+|++| +|+++..+...+.
T Consensus 52 erG--iTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF-------------~~~v~~sl~~aD~aI-LVVDas~gv~~qt 115 (600)
T PRK05433 52 ERG--ITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF-------------SYEVSRSLAACEGAL-LVVDASQGVEAQT 115 (600)
T ss_pred hcC--CcccccEEEEEEEccCCCcEEEEEEECCCcHHH-------------HHHHHHHHHHCCEEE-EEEECCCCCCHHH
Confidence 112 22333334443321 22467899999998764 445778899999654 5566665555444
Q ss_pred HHHHHHHhCCCCCceEEEeccCCccC
Q 012559 192 AIKLAREVDPTGERTFGVLTKLDLMD 217 (461)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~ 217 (461)
... +..+...+.+.|+|+||+|+..
T Consensus 116 ~~~-~~~~~~~~lpiIvViNKiDl~~ 140 (600)
T PRK05433 116 LAN-VYLALENDLEIIPVLNKIDLPA 140 (600)
T ss_pred HHH-HHHHHHCCCCEEEEEECCCCCc
Confidence 322 2222234688999999999864
No 193
>CHL00071 tufA elongation factor Tu
Probab=99.01 E-value=1.7e-09 Score=111.49 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=46.6
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCc-eEEEecc
Q 012559 134 NVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGER-TFGVLTK 212 (461)
Q Consensus 134 ~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~r-ti~VltK 212 (461)
+..+++|+||||..+ .+..+ ...+..+|. +++|+++..++..++. .++..+...+.+ .|+|+||
T Consensus 73 ~~~~~~~iDtPGh~~------------~~~~~-~~~~~~~D~-~ilVvda~~g~~~qt~-~~~~~~~~~g~~~iIvvvNK 137 (409)
T CHL00071 73 ENRHYAHVDCPGHAD------------YVKNM-ITGAAQMDG-AILVVSAADGPMPQTK-EHILLAKQVGVPNIVVFLNK 137 (409)
T ss_pred CCeEEEEEECCChHH------------HHHHH-HHHHHhCCE-EEEEEECCCCCcHHHH-HHHHHHHHcCCCEEEEEEEc
Confidence 446889999999432 22333 455677885 5566677766655433 345555555777 6689999
Q ss_pred CCccCCC
Q 012559 213 LDLMDKG 219 (461)
Q Consensus 213 ~D~~~~~ 219 (461)
+|+.+..
T Consensus 138 ~D~~~~~ 144 (409)
T CHL00071 138 EDQVDDE 144 (409)
T ss_pred cCCCCHH
Confidence 9998643
No 194
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.01 E-value=5.8e-09 Score=94.63 Aligned_cols=115 Identities=23% Similarity=0.253 Sum_probs=69.0
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhcC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 116 (461)
.|+|+|+.++|||||+.++++..| +... .|+. +
T Consensus 3 ki~iiG~~~vGKSsli~~~~~~~f-~~~~-----~~t~-----------------------------------------~ 35 (174)
T cd01871 3 KCVVVGDGAVGKTCLLISYTTNAF-PGEY-----IPTV-----------------------------------------F 35 (174)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCcC-----CCcc-----------------------------------------e
Confidence 689999999999999999998765 2211 1110 0
Q ss_pred CCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCc-ccc--HHHH
Q 012559 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IAT--SDAI 193 (461)
Q Consensus 117 ~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d-~~~--~~~l 193 (461)
..+ ...+.+. .....+.++||||.... ..+...|++++|++|+++...+.+ +.. ..+.
T Consensus 36 --~~~---~~~~~~~-~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~ 96 (174)
T cd01871 36 --DNY---SANVMVD-GKPVNLGLWDTAGQEDY-------------DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWY 96 (174)
T ss_pred --eee---EEEEEEC-CEEEEEEEEECCCchhh-------------hhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHH
Confidence 000 0011121 12256889999996543 445667899999766655443321 111 1123
Q ss_pred HHHHHhCCCCCceEEEeccCCccCC
Q 012559 194 KLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
..++...+ ..|.++|.||+|+.+.
T Consensus 97 ~~~~~~~~-~~piilvgnK~Dl~~~ 120 (174)
T cd01871 97 PEVRHHCP-NTPIILVGTKLDLRDD 120 (174)
T ss_pred HHHHHhCC-CCCEEEEeeChhhccC
Confidence 33344333 5899999999998643
No 195
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.01 E-value=3.3e-09 Score=98.54 Aligned_cols=25 Identities=36% Similarity=0.514 Sum_probs=23.0
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFL 61 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~l 61 (461)
.|+++|+.++|||||++.+++..|.
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~ 26 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVL 26 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC
Confidence 5899999999999999999998763
No 196
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.01 E-value=1.9e-09 Score=97.46 Aligned_cols=68 Identities=18% Similarity=0.159 Sum_probs=41.6
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccH----HHHHHHHHhCCCCCceEEEec
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS----DAIKLAREVDPTGERTFGVLT 211 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~----~~l~l~~~~d~~~~rti~Vlt 211 (461)
..+.++||||.... ..+...|++++|++|+++ +.....+-+ .++..++... .+.++++|.|
T Consensus 48 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~a~~~i~v~-d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~n 112 (173)
T cd04130 48 VRLQLCDTAGQDEF-------------DKLRPLCYPDTDVFLLCF-SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGT 112 (173)
T ss_pred EEEEEEECCCChhh-------------ccccccccCCCcEEEEEE-ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEee
Confidence 46789999997543 333455888999755554 443322221 2222333322 3589999999
Q ss_pred cCCccCC
Q 012559 212 KLDLMDK 218 (461)
Q Consensus 212 K~D~~~~ 218 (461)
|+|+...
T Consensus 113 K~Dl~~~ 119 (173)
T cd04130 113 QADLRTD 119 (173)
T ss_pred ChhhccC
Confidence 9998643
No 197
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.00 E-value=2.3e-09 Score=97.54 Aligned_cols=114 Identities=25% Similarity=0.232 Sum_probs=71.5
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhcC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 116 (461)
.|+++|+.++|||||+..++...| +....+ |- |
T Consensus 3 kivv~G~~~vGKTsli~~~~~~~f-~~~~~~-Ti---------------------------------------------~ 35 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKF-PTDYIP-TV---------------------------------------------F 35 (176)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC-CCCCCC-cc---------------------------------------------e
Confidence 589999999999999999998776 322111 10 0
Q ss_pred CCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccH----HH
Q 012559 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS----DA 192 (461)
Q Consensus 117 ~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~----~~ 192 (461)
..+. ..+.+. .....+.++||+|..+. ..+...|+++++++||+. +.+...+-. .+
T Consensus 36 --~~~~---~~~~~~-~~~v~l~i~Dt~G~~~~-------------~~~~~~~~~~a~~~ilvy-d~~~~~Sf~~~~~~w 95 (176)
T cd04133 36 --DNFS---ANVSVD-GNTVNLGLWDTAGQEDY-------------NRLRPLSYRGADVFVLAF-SLISRASYENVLKKW 95 (176)
T ss_pred --eeeE---EEEEEC-CEEEEEEEEECCCCccc-------------cccchhhcCCCcEEEEEE-EcCCHHHHHHHHHHH
Confidence 0110 112222 23367899999997654 456677999999766554 433222222 23
Q ss_pred HHHHHHhCCCCCceEEEeccCCccCC
Q 012559 193 IKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
...++...+ +.+.++|.||+|+.+.
T Consensus 96 ~~~i~~~~~-~~piilvgnK~Dl~~~ 120 (176)
T cd04133 96 VPELRHYAP-NVPIVLVGTKLDLRDD 120 (176)
T ss_pred HHHHHHhCC-CCCEEEEEeChhhccC
Confidence 334444444 6899999999999753
No 198
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.00 E-value=2e-09 Score=115.06 Aligned_cols=66 Identities=14% Similarity=0.144 Sum_probs=44.1
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCc
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 215 (461)
+.++|+||||.... ..+..+++..+|. +++|+++..++..+.. ..+..+...+.|+++|+||+|+
T Consensus 71 ~~i~~iDTPG~e~f-------------~~~~~~~~~~aD~-~IlVvDa~~g~~~qt~-e~i~~~~~~~vpiIvviNK~D~ 135 (586)
T PRK04004 71 PGLLFIDTPGHEAF-------------TNLRKRGGALADI-AILVVDINEGFQPQTI-EAINILKRRKTPFVVAANKIDR 135 (586)
T ss_pred CCEEEEECCChHHH-------------HHHHHHhHhhCCE-EEEEEECCCCCCHhHH-HHHHHHHHcCCCEEEEEECcCC
Confidence 45899999997553 4455567788885 5556666654433322 2333444457899999999998
Q ss_pred c
Q 012559 216 M 216 (461)
Q Consensus 216 ~ 216 (461)
.
T Consensus 136 ~ 136 (586)
T PRK04004 136 I 136 (586)
T ss_pred c
Confidence 6
No 199
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.99 E-value=1.8e-09 Score=99.30 Aligned_cols=115 Identities=23% Similarity=0.276 Sum_probs=68.6
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhcC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 116 (461)
.|+++|++++|||||++.+++..| |... .|+. +
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~-~~~~-----~~t~-----------------------------------------~ 34 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYF-PQVY-----EPTV-----------------------------------------F 34 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCcc-----CCcc-----------------------------------------e
Confidence 689999999999999999998876 2111 1110 0
Q ss_pred CCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCC-ccccH--HHH
Q 012559 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIATS--DAI 193 (461)
Q Consensus 117 ~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~-d~~~~--~~l 193 (461)
..+. ..+.+. .....+.|+||||.... ..+...|+..++++|++..-.+. .+.+. .++
T Consensus 35 --~~~~---~~i~~~-~~~~~l~i~Dt~G~~~~-------------~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~ 95 (189)
T cd04134 35 --ENYV---HDIFVD-GLHIELSLWDTAGQEEF-------------DRLRSLSYADTDVIMLCFSVDSPDSLENVESKWL 95 (189)
T ss_pred --eeeE---EEEEEC-CEEEEEEEEECCCChhc-------------cccccccccCCCEEEEEEECCCHHHHHHHHHHHH
Confidence 0000 011111 12256889999996543 33455678889976665443322 22221 233
Q ss_pred HHHHHhCCCCCceEEEeccCCccCC
Q 012559 194 KLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
..++...+ +.|+++|.||+|+.+.
T Consensus 96 ~~i~~~~~-~~piilvgNK~Dl~~~ 119 (189)
T cd04134 96 GEIREHCP-GVKLVLVALKCDLREA 119 (189)
T ss_pred HHHHHhCC-CCCEEEEEEChhhccC
Confidence 33443333 6899999999999754
No 200
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=2.2e-09 Score=97.28 Aligned_cols=153 Identities=16% Similarity=0.150 Sum_probs=97.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhh
Q 012559 33 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (461)
Q Consensus 33 ~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~ 112 (461)
..+-.|++||+.++|||+++-.+....|- . .+..
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~-----~--~~~s--------------------------------------- 43 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFN-----T--SFIS--------------------------------------- 43 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCc-----C--Cccc---------------------------------------
Confidence 46788999999999999999999988761 1 1110
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---
Q 012559 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT--- 189 (461)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~--- 189 (461)
.-++..+.-.+++.+ ....|.+|||.|..+. +.+..+|++.+..++|++.-.+. .+-
T Consensus 44 -----TiGIDFk~kti~l~g-~~i~lQiWDtaGQerf-------------~ti~~sYyrgA~gi~LvyDitne-~Sfeni 103 (207)
T KOG0078|consen 44 -----TIGIDFKIKTIELDG-KKIKLQIWDTAGQERF-------------RTITTAYYRGAMGILLVYDITNE-KSFENI 103 (207)
T ss_pred -----eEEEEEEEEEEEeCC-eEEEEEEEEcccchhH-------------HHHHHHHHhhcCeeEEEEEccch-HHHHHH
Confidence 011222222222222 3357899999997765 88999999999977766654442 222
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCCccCCCccHHHHHhCcccccCCCeeEEEeCChhhhccc
Q 012559 190 SDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKN 251 (461)
Q Consensus 190 ~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~ 251 (461)
..|++.+++..+.+.+.++|-||+|+.++..-..+--+......+..|+.+.+.+..++.+-
T Consensus 104 ~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~ea 165 (207)
T KOG0078|consen 104 RNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEA 165 (207)
T ss_pred HHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHH
Confidence 34566667777778999999999999875432111111112233555777766665554443
No 201
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=2.2e-09 Score=96.04 Aligned_cols=120 Identities=16% Similarity=0.177 Sum_probs=81.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
-+=.|+|+|+.|+|||-|+-.+.+..| |-.
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f-~e~------------------------------------------------- 37 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTF-TES------------------------------------------------- 37 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCc-chh-------------------------------------------------
Confidence 567899999999999999999999876 111
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---H
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---S 190 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~---~ 190 (461)
....-++......+++.+.. ..|.+|||.|..+. +.++.+|.+++|.||++. |.+...+- .
T Consensus 38 -~~sTIGVDf~~rt~e~~gk~-iKlQIWDTAGQERF-------------rtit~syYR~ahGii~vy-DiT~~~SF~~v~ 101 (205)
T KOG0084|consen 38 -YISTIGVDFKIRTVELDGKT-IKLQIWDTAGQERF-------------RTITSSYYRGAHGIIFVY-DITKQESFNNVK 101 (205)
T ss_pred -hcceeeeEEEEEEeeecceE-EEEEeeeccccHHH-------------hhhhHhhccCCCeEEEEE-EcccHHHhhhHH
Confidence 01112344444445555544 47999999996554 789999999999866553 43322221 2
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 191 DAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
.++.-.++......+.++|-||+|+.+..
T Consensus 102 ~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~ 130 (205)
T KOG0084|consen 102 RWIQEIDRYASENVPKLLVGNKCDLTEKR 130 (205)
T ss_pred HHHHHhhhhccCCCCeEEEeeccccHhhe
Confidence 33333444445567999999999998654
No 202
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.98 E-value=1.8e-09 Score=96.18 Aligned_cols=147 Identities=20% Similarity=0.310 Sum_probs=85.4
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhcC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 116 (461)
.|+|||+.++|||||++++.+..| |..... |-.
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~-~~~~~~-t~~--------------------------------------------- 33 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF-PENYIP-TIG--------------------------------------------- 33 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST-TSSSET-TSS---------------------------------------------
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc-cccccc-ccc---------------------------------------------
Confidence 489999999999999999998875 322111 110
Q ss_pred CCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---HHHH
Q 012559 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---SDAI 193 (461)
Q Consensus 117 ~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~---~~~l 193 (461)
+......+.+. .....+.++|+||.... ..+...++.+.+++|++. +.+..-+- ..++
T Consensus 34 ----~~~~~~~~~~~-~~~~~l~i~D~~g~~~~-------------~~~~~~~~~~~~~~ii~f-d~~~~~S~~~~~~~~ 94 (162)
T PF00071_consen 34 ----IDSYSKEVSID-GKPVNLEIWDTSGQERF-------------DSLRDIFYRNSDAIIIVF-DVTDEESFENLKKWL 94 (162)
T ss_dssp ----EEEEEEEEEET-TEEEEEEEEEETTSGGG-------------HHHHHHHHTTESEEEEEE-ETTBHHHHHTHHHHH
T ss_pred ----ccccccccccc-ccccccccccccccccc-------------cccccccccccccccccc-ccccccccccccccc
Confidence 00000111111 22356889999996543 445667889999766554 44332222 2344
Q ss_pred HHHHHhCCCCCceEEEeccCCccCCCc-cHHHHHhCcccccCCCeeEEEeCChhhhcc
Q 012559 194 KLAREVDPTGERTFGVLTKLDLMDKGT-NALEVLEGRSYRLQHPWVGIVNRSQADINK 250 (461)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~ 250 (461)
..+....+...+.++|.||.|+.+... ...+..+ .....+.+|+.+......++.+
T Consensus 95 ~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~-~~~~~~~~~~e~Sa~~~~~v~~ 151 (162)
T PF00071_consen 95 EEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQE-FAKELGVPYFEVSAKNGENVKE 151 (162)
T ss_dssp HHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHH-HHHHTTSEEEEEBTTTTTTHHH
T ss_pred ccccccccccccceeeeccccccccccchhhHHHH-HHHHhCCEEEEEECCCCCCHHH
Confidence 455556665689999999999986332 1111111 1223346777766665555443
No 203
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.98 E-value=6.1e-09 Score=98.76 Aligned_cols=116 Identities=18% Similarity=0.203 Sum_probs=72.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
..-.|++||+.++|||||++.+++..| +... .|+.
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F-~~~y-----~pTi--------------------------------------- 46 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCY-PETY-----VPTV--------------------------------------- 46 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCC-CCCc-----CCce---------------------------------------
Confidence 446799999999999999999998876 2211 1210
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc----
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---- 189 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~---- 189 (461)
| ..+. ..+.+. .....|.|+||||.... ..+...|+++++++||+. +.+...+-
T Consensus 47 --~--~~~~---~~i~~~-~~~v~l~iwDTaG~e~~-------------~~~~~~~~~~ad~vIlVy-Dit~~~Sf~~~~ 104 (232)
T cd04174 47 --F--ENYT---AGLETE-EQRVELSLWDTSGSPYY-------------DNVRPLCYSDSDAVLLCF-DISRPETVDSAL 104 (232)
T ss_pred --e--eeeE---EEEEEC-CEEEEEEEEeCCCchhh-------------HHHHHHHcCCCcEEEEEE-ECCChHHHHHHH
Confidence 0 0010 111121 12357899999996443 556778999999655554 44332221
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCCccC
Q 012559 190 SDAIKLAREVDPTGERTFGVLTKLDLMD 217 (461)
Q Consensus 190 ~~~l~l~~~~d~~~~rti~VltK~D~~~ 217 (461)
..+...++...+ +.++|+|.||+|+.+
T Consensus 105 ~~w~~~i~~~~~-~~piilVgNK~DL~~ 131 (232)
T cd04174 105 KKWKAEIMDYCP-STRILLIGCKTDLRT 131 (232)
T ss_pred HHHHHHHHHhCC-CCCEEEEEECccccc
Confidence 223344454444 578999999999864
No 204
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.98 E-value=5e-09 Score=108.64 Aligned_cols=143 Identities=17% Similarity=0.275 Sum_probs=72.6
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
...|+++|+.++|||||+++|++.. +..++.-+ +.+..-....++.-.++.-+.+...++ +.
T Consensus 6 ~~~v~iiGh~d~GKSTL~~~Ll~~~------g~i~~~~~----------~~~~~~~~~~g~~~~~~~~~~D~~~~E--r~ 67 (425)
T PRK12317 6 HLNLAVIGHVDHGKSTLVGRLLYET------GAIDEHII----------EELREEAKEKGKESFKFAWVMDRLKEE--RE 67 (425)
T ss_pred EEEEEEECCCCCChHHHHHHHHHHc------CCcCHHHH----------HHHHHHHHhcCCcccchhhhhccCHhH--hh
Confidence 4679999999999999999999763 22221100 000000000000000111111111111 11
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCC--ccccHH-
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ--DIATSD- 191 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~--d~~~~~- 191 (461)
.+++.+.....+.. +...++||||||..+. ...+...+..+|. +++|++++. +...+.
T Consensus 68 ----rG~T~d~~~~~~~~-~~~~i~liDtpG~~~~-------------~~~~~~~~~~aD~-~ilVvDa~~~~~~~~~~~ 128 (425)
T PRK12317 68 ----RGVTIDLAHKKFET-DKYYFTIVDCPGHRDF-------------VKNMITGASQADA-AVLVVAADDAGGVMPQTR 128 (425)
T ss_pred ----cCccceeeeEEEec-CCeEEEEEECCCcccc-------------hhhHhhchhcCCE-EEEEEEcccCCCCCcchH
Confidence 22333433333333 4478999999996442 1123344678885 555666665 443332
Q ss_pred -HHHHHHHhCCCC-CceEEEeccCCccC
Q 012559 192 -AIKLAREVDPTG-ERTFGVLTKLDLMD 217 (461)
Q Consensus 192 -~l~l~~~~d~~~-~rti~VltK~D~~~ 217 (461)
.+.+++.+ + .+.++|+||+|+.+
T Consensus 129 ~~~~~~~~~---~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 129 EHVFLARTL---GINQLIVAINKMDAVN 153 (425)
T ss_pred HHHHHHHHc---CCCeEEEEEEcccccc
Confidence 23344433 4 36889999999975
No 205
>PRK00007 elongation factor G; Reviewed
Probab=98.96 E-value=2.9e-09 Score=116.64 Aligned_cols=134 Identities=13% Similarity=0.161 Sum_probs=82.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
++..|+|+|+.++|||||+|+|+... |.. +.... . ..+..+.|+.....
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~------g~~-~~~g~-----v-----------~~~~~~~D~~~~E~-------- 57 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYT------GVN-HKIGE-----V-----------HDGAATMDWMEQEQ-------- 57 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhc------CCc-ccccc-----c-----------cCCcccCCCCHHHH--------
Confidence 57899999999999999999997421 100 00000 0 00112333332211
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
..+++-+.....+.. ....++||||||..+. ..-+.+.+...|+ +++|+++..++..++.
T Consensus 58 ----~rg~ti~~~~~~~~~-~~~~~~liDTPG~~~f-------------~~ev~~al~~~D~-~vlVvda~~g~~~qt~- 117 (693)
T PRK00007 58 ----ERGITITSAATTCFW-KDHRINIIDTPGHVDF-------------TIEVERSLRVLDG-AVAVFDAVGGVEPQSE- 117 (693)
T ss_pred ----hCCCCEeccEEEEEE-CCeEEEEEeCCCcHHH-------------HHHHHHHHHHcCE-EEEEEECCCCcchhhH-
Confidence 122333333333333 3478999999997543 1236677778885 5556677777666554
Q ss_pred HHHHHhCCCCCceEEEeccCCccCC
Q 012559 194 KLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
.+++.+...+.+.|+++||+|+...
T Consensus 118 ~~~~~~~~~~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 118 TVWRQADKYKVPRIAFVNKMDRTGA 142 (693)
T ss_pred HHHHHHHHcCCCEEEEEECCCCCCC
Confidence 3667777778999999999999854
No 206
>PLN03127 Elongation factor Tu; Provisional
Probab=98.96 E-value=2.4e-09 Score=111.09 Aligned_cols=132 Identities=15% Similarity=0.193 Sum_probs=75.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
....|+++|+.++|||||+++|+|..- ..+.. .... |. ..|... .+
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~-~~g~~--~~~~-------------~~---------~~D~~~--------~E- 105 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLA-EEGKA--KAVA-------------FD---------EIDKAP--------EE- 105 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHH-Hhhcc--ccee-------------ec---------cccCCh--------hH-
Confidence 446699999999999999999986421 11110 0000 00 000000 01
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
...+++-+........ +..+++||||||+.+. +.++.. -+..+|+ +++|++++.+...++ .
T Consensus 106 ---~~rGiTi~~~~~~~~~-~~~~i~~iDtPGh~~f------------~~~~~~-g~~~aD~-allVVda~~g~~~qt-~ 166 (447)
T PLN03127 106 ---KARGITIATAHVEYET-AKRHYAHVDCPGHADY------------VKNMIT-GAAQMDG-GILVVSAPDGPMPQT-K 166 (447)
T ss_pred ---hhcCceeeeeEEEEcC-CCeEEEEEECCCccch------------HHHHHH-HHhhCCE-EEEEEECCCCCchhH-H
Confidence 1123344444444433 3468999999997542 244443 3445885 556667776655443 3
Q ss_pred HHHHHhCCCCCce-EEEeccCCccCC
Q 012559 194 KLAREVDPTGERT-FGVLTKLDLMDK 218 (461)
Q Consensus 194 ~l~~~~d~~~~rt-i~VltK~D~~~~ 218 (461)
+++..+...+.+. |+|+||+|+++.
T Consensus 167 e~l~~~~~~gip~iIvviNKiDlv~~ 192 (447)
T PLN03127 167 EHILLARQVGVPSLVVFLNKVDVVDD 192 (447)
T ss_pred HHHHHHHHcCCCeEEEEEEeeccCCH
Confidence 3555555567784 788999999853
No 207
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.94 E-value=6.3e-09 Score=95.15 Aligned_cols=114 Identities=19% Similarity=0.247 Sum_probs=71.3
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 115 (461)
..|+++|+.++|||||++.+++..| +... .|+.
T Consensus 6 ~KivvvGd~~vGKTsli~~~~~~~f-~~~~-----~pT~----------------------------------------- 38 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKDCF-PENY-----VPTV----------------------------------------- 38 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CCcc-----CCce-----------------------------------------
Confidence 5799999999999999999998876 2211 1110
Q ss_pred CCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc----HH
Q 012559 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT----SD 191 (461)
Q Consensus 116 g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~----~~ 191 (461)
+ ..+. ..+.+ ......|.|+||+|.... ..+...|+++++++||+.. .+...+- ..
T Consensus 39 ~--~~~~---~~~~~-~~~~~~l~iwDtaG~e~~-------------~~~~~~~~~~ad~~ilvyD-it~~~Sf~~~~~~ 98 (182)
T cd04172 39 F--ENYT---ASFEI-DTQRIELSLWDTSGSPYY-------------DNVRPLSYPDSDAVLICFD-ISRPETLDSVLKK 98 (182)
T ss_pred e--eeeE---EEEEE-CCEEEEEEEEECCCchhh-------------HhhhhhhcCCCCEEEEEEE-CCCHHHHHHHHHH
Confidence 0 0010 11112 122357899999996442 4566789999997665554 4332222 22
Q ss_pred HHHHHHHhCCCCCceEEEeccCCccC
Q 012559 192 AIKLAREVDPTGERTFGVLTKLDLMD 217 (461)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~ 217 (461)
+...+++..+ ..+.|+|.||+|+.+
T Consensus 99 w~~~i~~~~~-~~piilVgNK~DL~~ 123 (182)
T cd04172 99 WKGEIQEFCP-NTKMLLVGCKSDLRT 123 (182)
T ss_pred HHHHHHHHCC-CCCEEEEeEChhhhc
Confidence 3334455554 589999999999864
No 208
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=1.2e-09 Score=97.35 Aligned_cols=157 Identities=15% Similarity=0.198 Sum_probs=94.6
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 115 (461)
-.||++|+.|+|||||+..++-.+|-+. . -||
T Consensus 6 ~KvvLLG~~~VGKSSlV~Rfvk~~F~e~-~-----e~T------------------------------------------ 37 (200)
T KOG0092|consen 6 FKVVLLGDSGVGKSSLVLRFVKDQFHEN-I-----EPT------------------------------------------ 37 (200)
T ss_pred EEEEEECCCCCCchhhhhhhhhCccccc-c-----ccc------------------------------------------
Confidence 4699999999999999999998887221 0 110
Q ss_pred CCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHH
Q 012559 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (461)
Q Consensus 116 g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 195 (461)
.+..|-...+. .......+.+|||.|..+. +.++.-|++++++. |+|-|.+..-+-..+..+
T Consensus 38 -IGaaF~tktv~---~~~~~ikfeIWDTAGQERy-------------~slapMYyRgA~AA-ivvYDit~~~SF~~aK~W 99 (200)
T KOG0092|consen 38 -IGAAFLTKTVT---VDDNTIKFEIWDTAGQERY-------------HSLAPMYYRGANAA-IVVYDITDEESFEKAKNW 99 (200)
T ss_pred -cccEEEEEEEE---eCCcEEEEEEEEcCCcccc-------------cccccceecCCcEE-EEEEecccHHHHHHHHHH
Confidence 11222222211 1222456789999998875 67888999999964 455555543333444445
Q ss_pred HHHhCCCCCc---eEEEeccCCccCCCc-cHHHHHhCcccccCCCeeEEEeCChhhhcccccHHHHHH
Q 012559 196 AREVDPTGER---TFGVLTKLDLMDKGT-NALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARR 259 (461)
Q Consensus 196 ~~~~d~~~~r---ti~VltK~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (461)
.+++.....| +.+|-||+|+.++.. ++.+.-. .....++-|+.+....+.++++....+...+
T Consensus 100 vkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~-yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~l 166 (200)
T KOG0092|consen 100 VKELQRQASPNIVIALVGNKADLLERREVEFEEAQA-YAESQGLLFFETSAKTGENVNEIFQAIAEKL 166 (200)
T ss_pred HHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHH-HHHhcCCEEEEEecccccCHHHHHHHHHHhc
Confidence 5555443333 445899999997443 2222211 1223556788888777766655544444333
No 209
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.93 E-value=6.7e-09 Score=94.63 Aligned_cols=113 Identities=19% Similarity=0.242 Sum_probs=70.2
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhcC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 116 (461)
.|+++|+.++|||||++++++..| |... .|+. +
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f-~~~~-----~~t~-----------------------------------------~ 35 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCY-PETY-----VPTV-----------------------------------------F 35 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CCCc-----CCce-----------------------------------------E
Confidence 699999999999999999998876 3221 1210 0
Q ss_pred CCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc----HHH
Q 012559 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT----SDA 192 (461)
Q Consensus 117 ~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~----~~~ 192 (461)
..++ ..+.+.+ ....+.++||||.... ..+...|+++++++|++. +.+...+- ..+
T Consensus 36 --~~~~---~~~~~~~-~~~~l~iwDt~G~~~~-------------~~~~~~~~~~a~~~ilvf-dit~~~Sf~~~~~~w 95 (178)
T cd04131 36 --ENYT---ASFEIDE-QRIELSLWDTSGSPYY-------------DNVRPLCYPDSDAVLICF-DISRPETLDSVLKKW 95 (178)
T ss_pred --EEEE---EEEEECC-EEEEEEEEECCCchhh-------------hhcchhhcCCCCEEEEEE-ECCChhhHHHHHHHH
Confidence 0010 1112222 2357889999996443 345667889999655554 44322221 233
Q ss_pred HHHHHHhCCCCCceEEEeccCCccC
Q 012559 193 IKLAREVDPTGERTFGVLTKLDLMD 217 (461)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~ 217 (461)
...+++..+ ..+.++|.||+|+.+
T Consensus 96 ~~~i~~~~~-~~~iilVgnK~DL~~ 119 (178)
T cd04131 96 RGEIQEFCP-NTKVLLVGCKTDLRT 119 (178)
T ss_pred HHHHHHHCC-CCCEEEEEEChhhhc
Confidence 334455555 579999999999864
No 210
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.93 E-value=7.4e-09 Score=95.41 Aligned_cols=115 Identities=23% Similarity=0.230 Sum_probs=70.4
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 115 (461)
-.|+++|+.++|||||+..++...| +... .|+.
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f-~~~~-----~~t~----------------------------------------- 36 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAF-PKEY-----IPTV----------------------------------------- 36 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CcCC-----CCce-----------------------------------------
Confidence 4799999999999999999998776 2211 1110
Q ss_pred CCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH----
Q 012559 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD---- 191 (461)
Q Consensus 116 g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~---- 191 (461)
| ..+. ..+.+ ......+.++||||..+. +.+...|+++++++|++..-.+.+ +-..
T Consensus 37 ~--~~~~---~~~~~-~~~~~~l~i~Dt~G~e~~-------------~~l~~~~~~~a~~~ilvydit~~~-Sf~~~~~~ 96 (191)
T cd01875 37 F--DNYS---AQTAV-DGRTVSLNLWDTAGQEEY-------------DRLRTLSYPQTNVFIICFSIASPS-SYENVRHK 96 (191)
T ss_pred E--eeeE---EEEEE-CCEEEEEEEEECCCchhh-------------hhhhhhhccCCCEEEEEEECCCHH-HHHHHHHH
Confidence 0 0000 01112 123367889999996553 567778999999766554433321 1111
Q ss_pred HHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
+...++...+ +.|.++|.||.|+.+.
T Consensus 97 w~~~i~~~~~-~~piilvgNK~DL~~~ 122 (191)
T cd01875 97 WHPEVCHHCP-NVPILLVGTKKDLRND 122 (191)
T ss_pred HHHHHHhhCC-CCCEEEEEeChhhhcC
Confidence 2222233233 6899999999999643
No 211
>PRK12739 elongation factor G; Reviewed
Probab=98.93 E-value=4.2e-09 Score=115.43 Aligned_cols=134 Identities=13% Similarity=0.171 Sum_probs=83.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
++..|+|+|+.++|||||+|+|+... +.. +.... . ..+..+.|+.....
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~------g~~-~~~~~-----v-----------~~~~~~~D~~~~E~-------- 55 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYT------GKS-HKIGE-----V-----------HDGAATMDWMEQEQ-------- 55 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhC------CCc-ccccc-----c-----------cCCccccCCChhHh--------
Confidence 57889999999999999999998531 110 00000 0 00112223322111
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
..+++-+.....+.. +...++||||||+.+. ...+..++...|+ +++|+++..+...++.
T Consensus 56 ----~rgiti~~~~~~~~~-~~~~i~liDTPG~~~f-------------~~e~~~al~~~D~-~ilVvDa~~g~~~qt~- 115 (691)
T PRK12739 56 ----ERGITITSAATTCFW-KGHRINIIDTPGHVDF-------------TIEVERSLRVLDG-AVAVFDAVSGVEPQSE- 115 (691)
T ss_pred ----hcCCCccceeEEEEE-CCEEEEEEcCCCHHHH-------------HHHHHHHHHHhCe-EEEEEeCCCCCCHHHH-
Confidence 122333333333333 4578999999997542 2347888888895 5566677766655543
Q ss_pred HHHHHhCCCCCceEEEeccCCccCC
Q 012559 194 KLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
.+++.+...+.|.|+++||+|+...
T Consensus 116 ~i~~~~~~~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 116 TVWRQADKYGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHcCCCEEEEEECCCCCCC
Confidence 4666666778999999999999853
No 212
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.92 E-value=8.2e-09 Score=100.01 Aligned_cols=124 Identities=23% Similarity=0.321 Sum_probs=75.3
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCC--CccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGS--GIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~--~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
-|.+||-||+||||||++++..+ |.-+ ..+|-.|.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~Ak--PKIadYpFTTL~Pn----------------------------------------- 197 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAK--PKIADYPFTTLVPN----------------------------------------- 197 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcC--CcccCCccccccCc-----------------------------------------
Confidence 47799999999999999999875 3222 13444443
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCC-cc--ccHH
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DI--ATSD 191 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~-d~--~~~~ 191 (461)
.| .+.+ .....+++-|.||++..+..+ .-+. .--.++|++.. +++.|+|... +- ..++
T Consensus 198 LG----------vV~~--~~~~sfv~ADIPGLIEGAs~G--~GLG----~~FLrHIERt~-vL~hviD~s~~~~~dp~~~ 258 (369)
T COG0536 198 LG----------VVRV--DGGESFVVADIPGLIEGASEG--VGLG----LRFLRHIERTR-VLLHVIDLSPIDGRDPIED 258 (369)
T ss_pred cc----------EEEe--cCCCcEEEecCcccccccccC--CCcc----HHHHHHHHhhh-eeEEEEecCcccCCCHHHH
Confidence 23 1122 344678999999999976543 1121 12335566667 4556666542 21 1233
Q ss_pred HHHHHHHhCC-----CCCceEEEeccCCccCCCccH
Q 012559 192 AIKLAREVDP-----TGERTFGVLTKLDLMDKGTNA 222 (461)
Q Consensus 192 ~l~l~~~~d~-----~~~rti~VltK~D~~~~~~~~ 222 (461)
...+..++.. ..++.++|+||+|+....++.
T Consensus 259 ~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~ 294 (369)
T COG0536 259 YQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEEL 294 (369)
T ss_pred HHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHH
Confidence 3333444332 368899999999976554433
No 213
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.92 E-value=8.3e-09 Score=97.29 Aligned_cols=114 Identities=17% Similarity=0.257 Sum_probs=69.6
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhcC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 116 (461)
.|+|||++++|||||++.+++..| |... .|+ .+
T Consensus 3 KIvvvGd~~vGKTsLi~~~~~~~f-~~~y-----~pT-----------------------------------------i~ 35 (222)
T cd04173 3 KIVVVGDAECGKTALLQVFAKDAY-PGSY-----VPT-----------------------------------------VF 35 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CCcc-----CCc-----------------------------------------cc
Confidence 589999999999999999998876 3221 111 00
Q ss_pred CCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHH----
Q 012559 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA---- 192 (461)
Q Consensus 117 ~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~---- 192 (461)
..+. ..+.+. .....|.||||+|.... ..+...|+.+.|++|+++ +.+...+-..+
T Consensus 36 --~~~~---~~~~~~-~~~v~L~iwDt~G~e~~-------------~~l~~~~~~~~d~illvf-dis~~~Sf~~i~~~w 95 (222)
T cd04173 36 --ENYT---ASFEID-KRRIELNMWDTSGSSYY-------------DNVRPLAYPDSDAVLICF-DISRPETLDSVLKKW 95 (222)
T ss_pred --cceE---EEEEEC-CEEEEEEEEeCCCcHHH-------------HHHhHHhccCCCEEEEEE-ECCCHHHHHHHHHHH
Confidence 0010 112221 22357889999996443 455667899999655554 44432222222
Q ss_pred HHHHHHhCCCCCceEEEeccCCccCC
Q 012559 193 IKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
....+...+ +.|.|+|.||+|+.+.
T Consensus 96 ~~~~~~~~~-~~piiLVgnK~DL~~~ 120 (222)
T cd04173 96 QGETQEFCP-NAKVVLVGCKLDMRTD 120 (222)
T ss_pred HHHHHhhCC-CCCEEEEEECcccccc
Confidence 222333333 5899999999999753
No 214
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.91 E-value=2.4e-09 Score=100.92 Aligned_cols=80 Identities=13% Similarity=0.140 Sum_probs=45.3
Q ss_pred ccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCC-------ccccH--H
Q 012559 121 ISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-------DIATS--D 191 (461)
Q Consensus 121 ~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~-------d~~~~--~ 191 (461)
++.+.....+.. ....++++||||..+. ...+..++..+|++| +|+++.. +...+ .
T Consensus 63 ~T~d~~~~~~~~-~~~~i~liDtpG~~~~-------------~~~~~~~~~~~d~~i-~VvDa~~~~~~~~~~~~~~~~~ 127 (219)
T cd01883 63 VTIDVGLAKFET-EKYRFTILDAPGHRDF-------------VPNMITGASQADVAV-LVVDARKGEFEAGFEKGGQTRE 127 (219)
T ss_pred cCeecceEEEee-CCeEEEEEECCChHHH-------------HHHHHHHhhhCCEEE-EEEECCCCccccccccccchHH
Confidence 444444443333 4578999999996432 223445677888654 5555554 22211 2
Q ss_pred HHHHHHHhCCCCCceEEEeccCCccC
Q 012559 192 AIKLAREVDPTGERTFGVLTKLDLMD 217 (461)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~ 217 (461)
...+++... ..|.|+|+||+|+..
T Consensus 128 ~~~~~~~~~--~~~iiivvNK~Dl~~ 151 (219)
T cd01883 128 HALLARTLG--VKQLIVAVNKMDDVT 151 (219)
T ss_pred HHHHHHHcC--CCeEEEEEEcccccc
Confidence 222333221 257888999999983
No 215
>PRK12735 elongation factor Tu; Reviewed
Probab=98.90 E-value=4.3e-09 Score=108.00 Aligned_cols=70 Identities=14% Similarity=0.149 Sum_probs=44.6
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceE-EEecc
Q 012559 134 NVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTF-GVLTK 212 (461)
Q Consensus 134 ~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti-~VltK 212 (461)
+..+++|+||||..+ .+.. +...+..+|. +++|+++..+...+.. +.+..+...+.+.+ +|+||
T Consensus 73 ~~~~i~~iDtPGh~~------------f~~~-~~~~~~~aD~-~llVvda~~g~~~qt~-e~l~~~~~~gi~~iivvvNK 137 (396)
T PRK12735 73 ANRHYAHVDCPGHAD------------YVKN-MITGAAQMDG-AILVVSAADGPMPQTR-EHILLARQVGVPYIVVFLNK 137 (396)
T ss_pred CCcEEEEEECCCHHH------------HHHH-HHhhhccCCE-EEEEEECCCCCchhHH-HHHHHHHHcCCCeEEEEEEe
Confidence 446789999999632 2233 3355667885 5556667665544432 34444555577866 57999
Q ss_pred CCccCC
Q 012559 213 LDLMDK 218 (461)
Q Consensus 213 ~D~~~~ 218 (461)
+|+.++
T Consensus 138 ~Dl~~~ 143 (396)
T PRK12735 138 CDMVDD 143 (396)
T ss_pred cCCcch
Confidence 999853
No 216
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.90 E-value=5.1e-09 Score=101.34 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=30.0
Q ss_pred EEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEE
Q 012559 38 VAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLV 74 (461)
Q Consensus 38 IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~ 74 (461)
|++||.||+|||||+|+|+|.+.-+.....||+-|..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~ 37 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNV 37 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhcee
Confidence 5899999999999999999998734444568877764
No 217
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.90 E-value=3.1e-09 Score=113.67 Aligned_cols=128 Identities=15% Similarity=0.260 Sum_probs=76.5
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCC-CCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRD-FLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~-~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
..|+++|+.++|||||+++|+... .+... +.++ ..+.|......+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~-~~v~-------------------------~~~~D~~~~Ere-------- 47 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRAN-EAVA-------------------------ERVMDSNDLERE-------- 47 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCccc-ccce-------------------------eecccCchHHHh--------
Confidence 469999999999999999998531 11111 1111 012233322211
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHH
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 194 (461)
.| .++......+ .. +...++||||||..+. ...+..+++.+|+++| |+++..+...+.. .
T Consensus 48 rG--iTI~~~~~~v--~~-~~~kinlIDTPGh~DF-------------~~ev~~~l~~aD~alL-VVDa~~G~~~qT~-~ 107 (594)
T TIGR01394 48 RG--ITILAKNTAI--RY-NGTKINIVDTPGHADF-------------GGEVERVLGMVDGVLL-LVDASEGPMPQTR-F 107 (594)
T ss_pred CC--ccEEeeeEEE--EE-CCEEEEEEECCCHHHH-------------HHHHHHHHHhCCEEEE-EEeCCCCCcHHHH-H
Confidence 12 2222222222 22 3478999999997553 4457888999996554 5566555544432 2
Q ss_pred HHHHhCCCCCceEEEeccCCccC
Q 012559 195 LAREVDPTGERTFGVLTKLDLMD 217 (461)
Q Consensus 195 l~~~~d~~~~rti~VltK~D~~~ 217 (461)
+++.+...+.|.|+|+||+|+..
T Consensus 108 ~l~~a~~~~ip~IVviNKiD~~~ 130 (594)
T TIGR01394 108 VLKKALELGLKPIVVINKIDRPS 130 (594)
T ss_pred HHHHHHHCCCCEEEEEECCCCCC
Confidence 44444456789999999999864
No 218
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.89 E-value=4.9e-09 Score=107.84 Aligned_cols=69 Identities=16% Similarity=0.210 Sum_probs=44.4
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH--HHHHHHHhCCCCCceEEEec
Q 012559 134 NVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD--AIKLAREVDPTGERTFGVLT 211 (461)
Q Consensus 134 ~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~--~l~l~~~~d~~~~rti~Vlt 211 (461)
+...++||||||..+. +..+. ..+..+|. +++|+++..++..+. .+.+++.+. ..+.|+|+|
T Consensus 78 ~~~~~~liDtPGh~~f------------~~~~~-~~~~~aD~-allVVda~~G~~~qt~~~~~~~~~~~--~~~iivviN 141 (406)
T TIGR02034 78 DKRKFIVADTPGHEQY------------TRNMA-TGASTADL-AVLLVDARKGVLEQTRRHSYIASLLG--IRHVVLAVN 141 (406)
T ss_pred CCeEEEEEeCCCHHHH------------HHHHH-HHHhhCCE-EEEEEECCCCCccccHHHHHHHHHcC--CCcEEEEEE
Confidence 4468999999995432 23333 45678885 556667776655443 344555543 245788999
Q ss_pred cCCccCC
Q 012559 212 KLDLMDK 218 (461)
Q Consensus 212 K~D~~~~ 218 (461)
|+|+.+.
T Consensus 142 K~D~~~~ 148 (406)
T TIGR02034 142 KMDLVDY 148 (406)
T ss_pred ecccccc
Confidence 9999853
No 219
>PTZ00258 GTP-binding protein; Provisional
Probab=98.89 E-value=8.3e-09 Score=104.26 Aligned_cols=43 Identities=16% Similarity=0.202 Sum_probs=34.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEE
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQ 76 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~ 76 (461)
+-.+|++||.||+|||||+|+|+|...-......||+.|..-.
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~ 62 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTAR 62 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEE
Confidence 4579999999999999999999998764444456888886533
No 220
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.88 E-value=8.8e-09 Score=108.81 Aligned_cols=137 Identities=15% Similarity=0.234 Sum_probs=79.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
+.-.|+++|+.++|||||+|+|+... +..++... +.-+.+ ......|+.....+
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~------g~i~~~g~-v~~~~~------------~~~~~~D~~~~E~~------- 62 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFG------GAIQEAGT-VKGRKS------------GRHATSDWMEMEKQ------- 62 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC------CCccccce-eecccc------------CccccCCCcHHHHh-------
Confidence 56899999999999999999997431 11111111 000000 00112344332211
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
.| -.++...+.+. .+...+++|||||..+. ...+..++..+|++| +|+++..+...+ ..
T Consensus 63 -rg--iSi~~~~~~~~---~~~~~inliDTPG~~df-------------~~~~~~~l~~aD~aI-lVvDa~~gv~~~-t~ 121 (526)
T PRK00741 63 -RG--ISVTSSVMQFP---YRDCLINLLDTPGHEDF-------------SEDTYRTLTAVDSAL-MVIDAAKGVEPQ-TR 121 (526)
T ss_pred -hC--CceeeeeEEEE---ECCEEEEEEECCCchhh-------------HHHHHHHHHHCCEEE-EEEecCCCCCHH-HH
Confidence 12 12222222222 23467999999997653 345677888899755 455665555443 23
Q ss_pred HHHHHhCCCCCceEEEeccCCccC
Q 012559 194 KLAREVDPTGERTFGVLTKLDLMD 217 (461)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~ 217 (461)
.+.+.....+.|.++++||+|+..
T Consensus 122 ~l~~~~~~~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 122 KLMEVCRLRDTPIFTFINKLDRDG 145 (526)
T ss_pred HHHHHHHhcCCCEEEEEECCcccc
Confidence 355555556899999999999874
No 221
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.88 E-value=3.5e-09 Score=101.74 Aligned_cols=104 Identities=25% Similarity=0.339 Sum_probs=68.2
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
--|+++||.||+|||||||+|+|.+-=+-+...+|..| +
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~-----------------------------------------V 101 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEP-----------------------------------------V 101 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceeccc-----------------------------------------c
Confidence 46899999999999999999999864222222233322 2
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHH
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 194 (461)
+| +...+..++.++|+||++..+..+... -..+.+.++++|. |++|.++..+...-+ .
T Consensus 102 PG-------------~l~Y~ga~IQild~Pgii~gas~g~gr------G~~vlsv~R~ADl-IiiVld~~~~~~~~~--~ 159 (365)
T COG1163 102 PG-------------MLEYKGAQIQLLDLPGIIEGASSGRGR------GRQVLSVARNADL-IIIVLDVFEDPHHRD--I 159 (365)
T ss_pred cc-------------eEeecCceEEEEcCcccccCcccCCCC------cceeeeeeccCCE-EEEEEecCCChhHHH--H
Confidence 44 444556889999999999876543211 1346677889994 666777765554322 2
Q ss_pred HHHHhCC
Q 012559 195 LAREVDP 201 (461)
Q Consensus 195 l~~~~d~ 201 (461)
+.+++..
T Consensus 160 i~~ELe~ 166 (365)
T COG1163 160 IERELED 166 (365)
T ss_pred HHHHHHh
Confidence 4555543
No 222
>PRK00049 elongation factor Tu; Reviewed
Probab=98.88 E-value=3.7e-09 Score=108.39 Aligned_cols=69 Identities=16% Similarity=0.161 Sum_probs=44.3
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceE-EEecc
Q 012559 134 NVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTF-GVLTK 212 (461)
Q Consensus 134 ~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti-~VltK 212 (461)
+..+++|+||||..+ .+..+ ...+..+|+ +++|+++......++ ..++..+...+.+.+ +|+||
T Consensus 73 ~~~~i~~iDtPG~~~------------f~~~~-~~~~~~aD~-~llVVDa~~g~~~qt-~~~~~~~~~~g~p~iiVvvNK 137 (396)
T PRK00049 73 EKRHYAHVDCPGHAD------------YVKNM-ITGAAQMDG-AILVVSAADGPMPQT-REHILLARQVGVPYIVVFLNK 137 (396)
T ss_pred CCeEEEEEECCCHHH------------HHHHH-HhhhccCCE-EEEEEECCCCCchHH-HHHHHHHHHcCCCEEEEEEee
Confidence 446799999999642 22333 355678885 555667766554443 224444445577876 58999
Q ss_pred CCccC
Q 012559 213 LDLMD 217 (461)
Q Consensus 213 ~D~~~ 217 (461)
+|+++
T Consensus 138 ~D~~~ 142 (396)
T PRK00049 138 CDMVD 142 (396)
T ss_pred cCCcc
Confidence 99985
No 223
>PRK12736 elongation factor Tu; Reviewed
Probab=98.88 E-value=5.1e-09 Score=107.31 Aligned_cols=70 Identities=17% Similarity=0.185 Sum_probs=43.8
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCc-eEEEecc
Q 012559 134 NVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGER-TFGVLTK 212 (461)
Q Consensus 134 ~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~r-ti~VltK 212 (461)
+..+++||||||..+ .+..+ ..-+..+|+ +++|+++..++..++ .+.+..+...+.+ .|+|+||
T Consensus 73 ~~~~i~~iDtPGh~~------------f~~~~-~~~~~~~d~-~llVvd~~~g~~~~t-~~~~~~~~~~g~~~~IvviNK 137 (394)
T PRK12736 73 EKRHYAHVDCPGHAD------------YVKNM-ITGAAQMDG-AILVVAATDGPMPQT-REHILLARQVGVPYLVVFLNK 137 (394)
T ss_pred CCcEEEEEECCCHHH------------HHHHH-HHHHhhCCE-EEEEEECCCCCchhH-HHHHHHHHHcCCCEEEEEEEe
Confidence 446889999999432 22333 334467785 555667766554443 2344444445777 5788999
Q ss_pred CCccCC
Q 012559 213 LDLMDK 218 (461)
Q Consensus 213 ~D~~~~ 218 (461)
+|+.+.
T Consensus 138 ~D~~~~ 143 (394)
T PRK12736 138 VDLVDD 143 (394)
T ss_pred cCCcch
Confidence 999853
No 224
>PRK10218 GTP-binding protein; Provisional
Probab=98.87 E-value=3.3e-09 Score=113.47 Aligned_cols=130 Identities=15% Similarity=0.253 Sum_probs=77.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCC-CCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRD-FLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~-~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~ 112 (461)
++..|+++|+.++|||||+++|++.. .+++. ... ...+.|.....
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~------~~~--------------------~~~v~D~~~~E-------- 49 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSR------AET--------------------QERVMDSNDLE-------- 49 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccc------ccc--------------------ceeeecccccc--------
Confidence 56889999999999999999999632 11111 000 00111111110
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHH
Q 012559 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (461)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~ 192 (461)
...+++-..-...+. .+...+.+|||||..+. ...+..+++.+|++|| |+++..+...+..
T Consensus 50 ----~erGiTi~~~~~~i~-~~~~~inliDTPG~~df-------------~~~v~~~l~~aDg~IL-VVDa~~G~~~qt~ 110 (607)
T PRK10218 50 ----KERGITILAKNTAIK-WNDYRINIVDTPGHADF-------------GGEVERVMSMVDSVLL-VVDAFDGPMPQTR 110 (607)
T ss_pred ----ccCceEEEEEEEEEe-cCCEEEEEEECCCcchh-------------HHHHHHHHHhCCEEEE-EEecccCccHHHH
Confidence 011222222222222 24478999999997664 4457789999997554 5566555444333
Q ss_pred HHHHHHhCCCCCceEEEeccCCccC
Q 012559 193 IKLAREVDPTGERTFGVLTKLDLMD 217 (461)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~ 217 (461)
. .++.+...+.|.|+|+||+|+..
T Consensus 111 ~-~l~~a~~~gip~IVviNKiD~~~ 134 (607)
T PRK10218 111 F-VTKKAFAYGLKPIVVINKVDRPG 134 (607)
T ss_pred H-HHHHHHHcCCCEEEEEECcCCCC
Confidence 2 34444446789999999999864
No 225
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.87 E-value=6.7e-09 Score=109.75 Aligned_cols=137 Identities=17% Similarity=0.211 Sum_probs=77.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
+...|+|+|+.++|||||+|+|+... +...+.+. +. .. ...+....|+...+.+
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~------g~i~~~g~-v~---~~---------g~~~~t~~D~~~~E~~------- 63 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYG------GAIQTAGA-VK---GR---------GSQRHAKSDWMEMEKQ------- 63 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhC------CCccccce-ec---cc---------cccccccCCCCHHHHh-------
Confidence 67899999999999999999996421 11111111 00 00 0000122344322211
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
.++|-..-.+.+ ..+...+.|+||||..+. ...+.+++..+|++|++ +++...+..+. .
T Consensus 64 -----rgisi~~~~~~~-~~~~~~inliDTPG~~df-------------~~~~~~~l~~aD~aIlV-vDa~~gv~~~t-~ 122 (527)
T TIGR00503 64 -----RGISITTSVMQF-PYRDCLVNLLDTPGHEDF-------------SEDTYRTLTAVDNCLMV-IDAAKGVETRT-R 122 (527)
T ss_pred -----cCCcEEEEEEEE-eeCCeEEEEEECCChhhH-------------HHHHHHHHHhCCEEEEE-EECCCCCCHHH-H
Confidence 122222112222 234578999999997543 34567788899975554 55554444332 2
Q ss_pred HHHHHhCCCCCceEEEeccCCccC
Q 012559 194 KLAREVDPTGERTFGVLTKLDLMD 217 (461)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~ 217 (461)
.+.+.....+.|+++|+||+|+..
T Consensus 123 ~l~~~~~~~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 123 KLMEVTRLRDTPIFTFMNKLDRDI 146 (527)
T ss_pred HHHHHHHhcCCCEEEEEECccccC
Confidence 244444445789999999999863
No 226
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.87 E-value=4.2e-09 Score=108.01 Aligned_cols=131 Identities=15% Similarity=0.193 Sum_probs=72.3
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
--.|+++|+.++|||||+++|++.- ...+.+-.. .+ ...|.. .. ++.
T Consensus 12 ~~~i~i~Ghvd~GKStL~~~L~~~~-~~~g~~~~~---------------~~---------~~~d~~--~~------E~~ 58 (394)
T TIGR00485 12 HVNIGTIGHVDHGKTTLTAAITTVL-AKEGGAAAR---------------AY---------DQIDNA--PE------EKA 58 (394)
T ss_pred eEEEEEEeecCCCHHHHHHHHHhhH-HHhhccccc---------------cc---------ccccCC--HH------HHh
Confidence 4679999999999999999999651 111110000 00 000000 00 111
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHH
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 194 (461)
.+++-+...+.+.. ....++||||||..+. +..+ ...+..+|. +++|+++..+...++ .+
T Consensus 59 ----rG~Ti~~~~~~~~~-~~~~~~liDtpGh~~f------------~~~~-~~~~~~~D~-~ilVvda~~g~~~qt-~e 118 (394)
T TIGR00485 59 ----RGITINTAHVEYET-ENRHYAHVDCPGHADY------------VKNM-ITGAAQMDG-AILVVSATDGPMPQT-RE 118 (394)
T ss_pred ----cCcceeeEEEEEcC-CCEEEEEEECCchHHH------------HHHH-HHHHhhCCE-EEEEEECCCCCcHHH-HH
Confidence 22333333344433 3467899999996432 2333 344567785 455666765544433 23
Q ss_pred HHHHhCCCCCceE-EEeccCCccCC
Q 012559 195 LAREVDPTGERTF-GVLTKLDLMDK 218 (461)
Q Consensus 195 l~~~~d~~~~rti-~VltK~D~~~~ 218 (461)
.+..+...+.+.+ +|+||+|+.++
T Consensus 119 ~l~~~~~~gi~~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 119 HILLARQVGVPYIVVFLNKCDMVDD 143 (394)
T ss_pred HHHHHHHcCCCEEEEEEEecccCCH
Confidence 4444444567765 68999999854
No 227
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.86 E-value=7.3e-09 Score=106.61 Aligned_cols=67 Identities=18% Similarity=0.195 Sum_probs=41.0
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcc-cc--HHHHHHHHHhCCCCCceEEEecc
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI-AT--SDAIKLAREVDPTGERTFGVLTK 212 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~-~~--~~~l~l~~~~d~~~~rti~VltK 212 (461)
..++|+||||..+. ...+..++..+|+ +++|++++... .. .+.+.++..+. ..+.++|+||
T Consensus 80 ~~i~liDtPGh~~f-------------~~~~~~g~~~aD~-aIlVVDa~~g~~~~qt~e~l~~l~~~g--i~~iIVvvNK 143 (406)
T TIGR03680 80 RRVSFVDAPGHETL-------------MATMLSGAALMDG-ALLVIAANEPCPQPQTKEHLMALEIIG--IKNIVIVQNK 143 (406)
T ss_pred cEEEEEECCCHHHH-------------HHHHHHHHHHCCE-EEEEEECCCCccccchHHHHHHHHHcC--CCeEEEEEEc
Confidence 57899999995432 2334556677885 55566666543 22 23333333321 2468999999
Q ss_pred CCccCC
Q 012559 213 LDLMDK 218 (461)
Q Consensus 213 ~D~~~~ 218 (461)
+|+.+.
T Consensus 144 ~Dl~~~ 149 (406)
T TIGR03680 144 IDLVSK 149 (406)
T ss_pred cccCCH
Confidence 999854
No 228
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.85 E-value=1.2e-08 Score=102.10 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=31.2
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEE
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLV 74 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~ 74 (461)
++|++||.||+|||||+|+|+|.+.-......||+.|..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~ 41 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNV 41 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceE
Confidence 689999999999999999999987423333568877763
No 229
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.85 E-value=4.9e-09 Score=113.88 Aligned_cols=69 Identities=19% Similarity=0.233 Sum_probs=43.8
Q ss_pred CCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccH--HHHHHHHHhCCCCCceEEEe
Q 012559 133 PNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--DAIKLAREVDPTGERTFGVL 210 (461)
Q Consensus 133 p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~--~~l~l~~~~d~~~~rti~Vl 210 (461)
.+..+++||||||..+. +..+. ..+..+|. +++|+++..++..+ +...+++.+. -.+.|+|+
T Consensus 101 ~~~~~~~liDtPG~~~f------------~~~~~-~~~~~aD~-~llVvda~~g~~~~t~e~~~~~~~~~--~~~iivvv 164 (632)
T PRK05506 101 TPKRKFIVADTPGHEQY------------TRNMV-TGASTADL-AIILVDARKGVLTQTRRHSFIASLLG--IRHVVLAV 164 (632)
T ss_pred cCCceEEEEECCChHHH------------HHHHH-HHHHhCCE-EEEEEECCCCccccCHHHHHHHHHhC--CCeEEEEE
Confidence 34578999999995431 23333 35778885 55667776655433 3344555442 14678899
Q ss_pred ccCCccC
Q 012559 211 TKLDLMD 217 (461)
Q Consensus 211 tK~D~~~ 217 (461)
||+|+.+
T Consensus 165 NK~D~~~ 171 (632)
T PRK05506 165 NKMDLVD 171 (632)
T ss_pred Eeccccc
Confidence 9999985
No 230
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.85 E-value=1.9e-08 Score=94.39 Aligned_cols=119 Identities=23% Similarity=0.327 Sum_probs=79.0
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCc--cccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI--VTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~--~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
-+|+|+|..|||||||++++.+..| +.+... .+..|....
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~-~~~~~~t~~~~~~~~~~------------------------------------- 47 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF-PEGYPPTIGNLDPAKTI------------------------------------- 47 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcC-cccCCCceeeeeEEEEE-------------------------------------
Confidence 5899999999999999999999876 322211 111221000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCC---ccccH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ---DIATS 190 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~---d~~~~ 190 (461)
....+...+.++||+|.... +.+...|...++++++++..... +....
T Consensus 48 ----------------~~~~~~~~~~~~Dt~gq~~~-------------~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~ 98 (219)
T COG1100 48 ----------------EPYRRNIKLQLWDTAGQEEY-------------RSLRPEYYRGANGILIVYDSTLRESSDELTE 98 (219)
T ss_pred ----------------EeCCCEEEEEeecCCCHHHH-------------HHHHHHHhcCCCEEEEEEecccchhhhHHHH
Confidence 00111345889999997654 67888999999987777665542 22223
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCccCCCcc
Q 012559 191 DAIKLAREVDPTGERTFGVLTKLDLMDKGTN 221 (461)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~~~~ 221 (461)
.+...++...+...+.+.|.||+|+......
T Consensus 99 ~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~ 129 (219)
T COG1100 99 EWLEELRELAPDDVPILLVGNKIDLFDEQSS 129 (219)
T ss_pred HHHHHHHHhCCCCceEEEEecccccccchhH
Confidence 3444455555567899999999999876543
No 231
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=7.6e-09 Score=87.94 Aligned_cols=118 Identities=20% Similarity=0.243 Sum_probs=81.7
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhcC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 116 (461)
.+.|+|+.|+||||++-+..|..|-|. .++ + -|
T Consensus 23 KlliiGnssvGKTSfl~ry~ddSFt~a---fvs----------T----------------------------------vG 55 (193)
T KOG0093|consen 23 KLLIIGNSSVGKTSFLFRYADDSFTSA---FVS----------T----------------------------------VG 55 (193)
T ss_pred eEEEEccCCccchhhhHHhhccccccc---eee----------e----------------------------------ee
Confidence 699999999999999999999988220 000 0 01
Q ss_pred CCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--HHHHH
Q 012559 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT--SDAIK 194 (461)
Q Consensus 117 ~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~--~~~l~ 194 (461)
+..+.-.+ ..+.....|.++||.|.... +.++..|++.+..+||+....|...-+ +++.-
T Consensus 56 ----idFKvKTv-yr~~kRiklQiwDTagqEry-------------rtiTTayyRgamgfiLmyDitNeeSf~svqdw~t 117 (193)
T KOG0093|consen 56 ----IDFKVKTV-YRSDKRIKLQIWDTAGQERY-------------RTITTAYYRGAMGFILMYDITNEESFNSVQDWIT 117 (193)
T ss_pred ----eeEEEeEe-eecccEEEEEEEecccchhh-------------hHHHHHHhhccceEEEEEecCCHHHHHHHHHHHH
Confidence 11111111 12223467899999997664 788999999999999988776643222 44444
Q ss_pred HHHHhCCCCCceEEEeccCCccCCC
Q 012559 195 LAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 195 l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
.++.+.....++|+|.||||+-++.
T Consensus 118 qIktysw~naqvilvgnKCDmd~eR 142 (193)
T KOG0093|consen 118 QIKTYSWDNAQVILVGNKCDMDSER 142 (193)
T ss_pred HheeeeccCceEEEEecccCCccce
Confidence 5566667789999999999997654
No 232
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.82 E-value=1.9e-08 Score=110.66 Aligned_cols=134 Identities=17% Similarity=0.285 Sum_probs=78.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
....|+++|+.++|||||+++|+... |..++.. .....+.|+.....+
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~------g~i~~~~-------------------~~~~~~~d~~~~e~~------- 65 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGA------GMISEEL-------------------AGQQLYLDFDEQEQE------- 65 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHc------CCCchhc-------------------CCceeecCCCHHHHh-------
Confidence 56899999999999999999998531 2211110 000112222221110
Q ss_pred hcCCCCcccCccEEEEE-ecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHH
Q 012559 114 ITGKSKQISNIPIQLSI-YSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i-~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~ 192 (461)
.|. ++....+.+.+ ...+...+.||||||..+. ...+..++..+|+++ +|+++..++..+..
T Consensus 66 -rg~--Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f-------------~~~~~~al~~aD~~l-lVvda~~g~~~~t~ 128 (720)
T TIGR00490 66 -RGI--TINAANVSMVHEYEGNEYLINLIDTPGHVDF-------------GGDVTRAMRAVDGAI-VVVCAVEGVMPQTE 128 (720)
T ss_pred -hcc--hhhcccceeEEeecCCceEEEEEeCCCcccc-------------HHHHHHHHHhcCEEE-EEEecCCCCCccHH
Confidence 111 11111111111 2334578999999998764 345678889999655 45566655544432
Q ss_pred HHHHHHhCCCCCceEEEeccCCccC
Q 012559 193 IKLAREVDPTGERTFGVLTKLDLMD 217 (461)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~ 217 (461)
.+++.+...+.+.++|+||+|...
T Consensus 129 -~~~~~~~~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 129 -TVLRQALKENVKPVLFINKVDRLI 152 (720)
T ss_pred -HHHHHHHHcCCCEEEEEEChhccc
Confidence 345555455678899999999863
No 233
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.82 E-value=1.2e-08 Score=106.74 Aligned_cols=146 Identities=15% Similarity=0.170 Sum_probs=76.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCc--ccChHHHHHHHHHHh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKK--FTDFAAVRKEISDET 111 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~--~~d~~~v~~~i~~~~ 111 (461)
....|++||+.++|||||+++|+... +..++.-+ ..+..-....+.. -.++.-+.+...++.
T Consensus 26 ~~~~i~iiGhvdaGKSTL~~~LL~~~------g~i~~~~~----------~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr 89 (474)
T PRK05124 26 SLLRFLTCGSVDDGKSTLIGRLLHDT------KQIYEDQL----------ASLHNDSKRHGTQGEKLDLALLVDGLQAER 89 (474)
T ss_pred CceEEEEECCCCCChHHHHHHHHHhc------CCCcHHHH----------HHHHHHHHhcCCCccccchhhhccCChHHh
Confidence 56899999999999999999999763 22221100 0000000000000 000111111111111
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccH-
Q 012559 112 DRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS- 190 (461)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~- 190 (461)
..+++-+.-. ..+..+..+++||||||..+ ...+++.. +..+|. +++|+++..+...+
T Consensus 90 ------~rgiTid~~~-~~~~~~~~~i~~iDTPGh~~------------f~~~~~~~-l~~aD~-allVVDa~~G~~~qt 148 (474)
T PRK05124 90 ------EQGITIDVAY-RYFSTEKRKFIIADTPGHEQ------------YTRNMATG-ASTCDL-AILLIDARKGVLDQT 148 (474)
T ss_pred ------hcCCCeEeeE-EEeccCCcEEEEEECCCcHH------------HHHHHHHH-HhhCCE-EEEEEECCCCccccc
Confidence 1223333222 22334557899999999432 22344443 578885 56666777655443
Q ss_pred -HHHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 191 -DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 191 -~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
+...++..+. -.+.|+|+||+|+.+.
T Consensus 149 ~~~~~l~~~lg--~~~iIvvvNKiD~~~~ 175 (474)
T PRK05124 149 RRHSFIATLLG--IKHLVVAVNKMDLVDY 175 (474)
T ss_pred hHHHHHHHHhC--CCceEEEEEeeccccc
Confidence 3334555553 1468889999999853
No 234
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.81 E-value=2e-08 Score=91.25 Aligned_cols=114 Identities=19% Similarity=0.300 Sum_probs=72.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
+--+|+++|.++|||||+++.|.+..+ .+-.||
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~-------~~~~pT---------------------------------------- 45 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEI-------SETIPT---------------------------------------- 45 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSE-------EEEEEE----------------------------------------
T ss_pred cEEEEEEECCCccchHHHHHHhhhccc-------cccCcc----------------------------------------
Confidence 457899999999999999999997644 111221
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
.| +.-. .+.. +...++++|++|-... +.+...|+.+.+.+|++|..++.+ .-.++.
T Consensus 46 -~g----~~~~--~i~~---~~~~~~~~d~gG~~~~-------------~~~w~~y~~~~~~iIfVvDssd~~-~l~e~~ 101 (175)
T PF00025_consen 46 -IG----FNIE--EIKY---KGYSLTIWDLGGQESF-------------RPLWKSYFQNADGIIFVVDSSDPE-RLQEAK 101 (175)
T ss_dssp -SS----EEEE--EEEE---TTEEEEEEEESSSGGG-------------GGGGGGGHTTESEEEEEEETTGGG-GHHHHH
T ss_pred -cc----cccc--eeee---CcEEEEEEeccccccc-------------cccceeeccccceeEEEEecccce-eecccc
Confidence 11 1100 1111 3367899999996543 456778999999766555444322 233343
Q ss_pred HHHHH-hC---CCCCceEEEeccCCccCC
Q 012559 194 KLARE-VD---PTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 194 ~l~~~-~d---~~~~rti~VltK~D~~~~ 218 (461)
..+.. +. -.+.|.++++||.|..+.
T Consensus 102 ~~L~~ll~~~~~~~~piLIl~NK~D~~~~ 130 (175)
T PF00025_consen 102 EELKELLNDPELKDIPILILANKQDLPDA 130 (175)
T ss_dssp HHHHHHHTSGGGTTSEEEEEEESTTSTTS
T ss_pred cchhhhcchhhcccceEEEEeccccccCc
Confidence 33333 22 236899999999998754
No 235
>PRK13351 elongation factor G; Reviewed
Probab=98.81 E-value=1.1e-08 Score=112.28 Aligned_cols=133 Identities=16% Similarity=0.236 Sum_probs=79.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
+...|+|+|+.++|||||+++|+... +...+ ...+ ..+....|+.....+
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~------g~~~~-~~~v----------------~~~~~~~d~~~~e~~------- 56 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYT------GKIHK-MGEV----------------EDGTTVTDWMPQEQE------- 56 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhc------CCccc-cccc----------------cCCcccCCCCHHHHh-------
Confidence 56799999999999999999998542 11000 0000 001112233221110
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
.| .++......+.. +...+.||||||..+. ...+..+++..|++++ |+++..+...+. .
T Consensus 57 -r~--~ti~~~~~~~~~---~~~~i~liDtPG~~df-------------~~~~~~~l~~aD~~il-Vvd~~~~~~~~~-~ 115 (687)
T PRK13351 57 -RG--ITIESAATSCDW---DNHRINLIDTPGHIDF-------------TGEVERSLRVLDGAVV-VFDAVTGVQPQT-E 115 (687)
T ss_pred -cC--CCcccceEEEEE---CCEEEEEEECCCcHHH-------------HHHHHHHHHhCCEEEE-EEeCCCCCCHHH-H
Confidence 11 112222222222 3478999999997653 4567889999996554 556655544333 2
Q ss_pred HHHHHhCCCCCceEEEeccCCccC
Q 012559 194 KLAREVDPTGERTFGVLTKLDLMD 217 (461)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~ 217 (461)
.+.+.+...+.|.++|+||+|+..
T Consensus 116 ~~~~~~~~~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 116 TVWRQADRYGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHhcCCCEEEEEECCCCCC
Confidence 345556666899999999999874
No 236
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.81 E-value=1.8e-08 Score=111.00 Aligned_cols=133 Identities=14% Similarity=0.236 Sum_probs=79.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
+...|+|+|+.++|||||+++|+... |..++.- .....+.|+...+.+
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~------g~i~~~~-------------------~g~~~~~D~~~~E~~------- 66 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGA------GMISEEL-------------------AGEQLALDFDEEEQA------- 66 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHc------CCcchhh-------------------cCcceecCccHHHHH-------
Confidence 57889999999999999999998642 2222210 001123344332211
Q ss_pred hcCCCCcccCccEEEEEe-cCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHH
Q 012559 114 ITGKSKQISNIPIQLSIY-SPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~-~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~ 192 (461)
.| -++....+.+... ..+...++||||||..+. ...+...+...|++| +|+++..+...+..
T Consensus 67 -rg--iTi~~~~~~~~~~~~~~~~~i~liDtPG~~df-------------~~~~~~~l~~~D~av-lVvda~~g~~~~t~ 129 (731)
T PRK07560 67 -RG--ITIKAANVSMVHEYEGKEYLINLIDTPGHVDF-------------GGDVTRAMRAVDGAI-VVVDAVEGVMPQTE 129 (731)
T ss_pred -hh--hhhhccceEEEEEecCCcEEEEEEcCCCccCh-------------HHHHHHHHHhcCEEE-EEEECCCCCCccHH
Confidence 11 1111222222221 223467899999998774 345677888889655 55666666554433
Q ss_pred HHHHHHhCCCCCceEEEeccCCcc
Q 012559 193 IKLAREVDPTGERTFGVLTKLDLM 216 (461)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~ 216 (461)
.+++.+...+.+.|+++||+|..
T Consensus 130 -~~~~~~~~~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 130 -TVLRQALRERVKPVLFINKVDRL 152 (731)
T ss_pred -HHHHHHHHcCCCeEEEEECchhh
Confidence 24454444567889999999986
No 237
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.80 E-value=1.8e-09 Score=91.08 Aligned_cols=24 Identities=29% Similarity=0.697 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDF 60 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~ 60 (461)
+|+|+|..+||||||+++|++..+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-
T ss_pred CEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999999875
No 238
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.80 E-value=1.4e-08 Score=96.10 Aligned_cols=98 Identities=18% Similarity=0.194 Sum_probs=55.6
Q ss_pred ecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCc-eEEE
Q 012559 131 YSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGER-TFGV 209 (461)
Q Consensus 131 ~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~r-ti~V 209 (461)
..+....++++||||.. .. +...+..+| ++++|+++..+...++. .+...+...+.+ +|+|
T Consensus 78 ~~~~~~~i~~vDtPg~~---------------~~-~l~~ak~aD-vVllviDa~~~~~~~~~-~i~~~l~~~g~p~vi~V 139 (225)
T cd01882 78 VTGKKRRLTFIECPNDI---------------NA-MIDIAKVAD-LVLLLIDASFGFEMETF-EFLNILQVHGFPRVMGV 139 (225)
T ss_pred EecCCceEEEEeCCchH---------------HH-HHHHHHhcC-EEEEEEecCcCCCHHHH-HHHHHHHHcCCCeEEEE
Confidence 34456789999999842 11 223356677 56677777766655443 355555545666 4569
Q ss_pred eccCCccCCCccHHHH---HhCcccccCCCeeEEEeCChh
Q 012559 210 LTKLDLMDKGTNALEV---LEGRSYRLQHPWVGIVNRSQA 246 (461)
Q Consensus 210 ltK~D~~~~~~~~~~~---l~~~~~~l~~g~~~v~~~s~~ 246 (461)
+||+|++.+.....++ ++........+|..+...|+.
T Consensus 140 vnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~ 179 (225)
T cd01882 140 LTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGI 179 (225)
T ss_pred EeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeec
Confidence 9999998543322222 221111112355667776643
No 239
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.79 E-value=3.6e-08 Score=90.37 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDF 60 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~ 60 (461)
.|+|+|..++|||||++.+.+..+
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~ 26 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEF 26 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 689999999999999999986554
No 240
>PLN03126 Elongation factor Tu; Provisional
Probab=98.77 E-value=1.3e-08 Score=106.33 Aligned_cols=132 Identities=14% Similarity=0.154 Sum_probs=74.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
..-.|+++|+.++|||||+++|++..- .+..+.+.. + .+.|...- ++
T Consensus 80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~-----~i~~~~~~~-----------~---------~~~D~~~~--------Er 126 (478)
T PLN03126 80 PHVNIGTIGHVDHGKTTLTAALTMALA-----SMGGSAPKK-----------Y---------DEIDAAPE--------ER 126 (478)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhhh-----hhccccccc-----------c---------ccccCChh--------HH
Confidence 345699999999999999999997532 111111100 0 01111110 11
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
. .+++-+.....+. .+...++||||||..+. +.++ ...+..+|+ .++|+++..+...+..
T Consensus 127 ~----rGiTi~~~~~~~~-~~~~~i~liDtPGh~~f------------~~~~-~~g~~~aD~-ailVVda~~G~~~qt~- 186 (478)
T PLN03126 127 A----RGITINTATVEYE-TENRHYAHVDCPGHADY------------VKNM-ITGAAQMDG-AILVVSGADGPMPQTK- 186 (478)
T ss_pred h----CCeeEEEEEEEEe-cCCcEEEEEECCCHHHH------------HHHH-HHHHhhCCE-EEEEEECCCCCcHHHH-
Confidence 1 1223232222232 24468999999996542 2333 455567885 5556677766554432
Q ss_pred HHHHHhCCCCCc-eEEEeccCCccCC
Q 012559 194 KLAREVDPTGER-TFGVLTKLDLMDK 218 (461)
Q Consensus 194 ~l~~~~d~~~~r-ti~VltK~D~~~~ 218 (461)
+.+..+...+.+ .|+|+||+|+.+.
T Consensus 187 e~~~~~~~~gi~~iIvvvNK~Dl~~~ 212 (478)
T PLN03126 187 EHILLAKQVGVPNMVVFLNKQDQVDD 212 (478)
T ss_pred HHHHHHHHcCCCeEEEEEecccccCH
Confidence 244445555777 6789999999863
No 241
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.76 E-value=4.3e-08 Score=92.39 Aligned_cols=128 Identities=20% Similarity=0.283 Sum_probs=81.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
+.|++++.|..|+|||||||.++..+.. ..++ ...
T Consensus 135 ~~pe~~~~g~SNVGKSSLln~~~r~k~~-~~t~--k~K------------------------------------------ 169 (320)
T KOG2486|consen 135 KRPELAFYGRSNVGKSSLLNDLVRVKNI-ADTS--KSK------------------------------------------ 169 (320)
T ss_pred CCceeeeecCCcccHHHHHhhhhhhhhh-hhhc--CCC------------------------------------------
Confidence 5689999999999999999999987541 0000 001
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeE--EEEEecCCCccccHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCI--ILAISPANQDIATSD 191 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~i--IL~V~~a~~d~~~~~ 191 (461)
+|..+. ++.+- -...+.+||+||+.....+ .+..+...+++..|+.+-+.+ +++.+++...+..-|
T Consensus 170 -~g~Tq~-------in~f~-v~~~~~~vDlPG~~~a~y~---~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D 237 (320)
T KOG2486|consen 170 -NGKTQA-------INHFH-VGKSWYEVDLPGYGRAGYG---FELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTD 237 (320)
T ss_pred -Ccccee-------eeeee-ccceEEEEecCCcccccCC---ccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCC
Confidence 111000 00111 1257899999996554332 233334478899999764422 344556666666666
Q ss_pred HHHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 192 AIKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
.. .+..+...+.|...|+||||.+...
T Consensus 238 ~~-~i~~~ge~~VP~t~vfTK~DK~k~~ 264 (320)
T KOG2486|consen 238 NP-EIAWLGENNVPMTSVFTKCDKQKKV 264 (320)
T ss_pred hH-HHHHHhhcCCCeEEeeehhhhhhhc
Confidence 54 5566777899999999999998543
No 242
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.76 E-value=5.5e-08 Score=89.95 Aligned_cols=65 Identities=22% Similarity=0.093 Sum_probs=40.5
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccH----HHHHHHHHhCCCCCceEEEec
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS----DAIKLAREVDPTGERTFGVLT 211 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~----~~l~l~~~~d~~~~rti~Vlt 211 (461)
..|.|+||+|... .+...|+++++++||+. +.+...+-. .+...++...+ +.|.|+|.|
T Consensus 66 v~l~iwDTaG~~~---------------~~~~~~~~~ad~iilv~-d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilvgN 128 (195)
T cd01873 66 VSLRLWDTFGDHD---------------KDRRFAYGRSDVVLLCF-SIASPNSLRNVKTMWYPEIRHFCP-RVPVILVGC 128 (195)
T ss_pred EEEEEEeCCCChh---------------hhhcccCCCCCEEEEEE-ECCChhHHHHHHHHHHHHHHHhCC-CCCEEEEEE
Confidence 5789999999643 12235888999655554 443322222 13333444333 579999999
Q ss_pred cCCccC
Q 012559 212 KLDLMD 217 (461)
Q Consensus 212 K~D~~~ 217 (461)
|+|+.+
T Consensus 129 K~DL~~ 134 (195)
T cd01873 129 KLDLRY 134 (195)
T ss_pred chhccc
Confidence 999864
No 243
>PLN00023 GTP-binding protein; Provisional
Probab=98.75 E-value=4.1e-08 Score=96.39 Aligned_cols=27 Identities=33% Similarity=0.377 Sum_probs=24.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDF 60 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~ 60 (461)
..-.|+|+|+.++|||||++.+++..|
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F 46 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSS 46 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCc
Confidence 456899999999999999999998876
No 244
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.74 E-value=2.4e-08 Score=90.31 Aligned_cols=118 Identities=21% Similarity=0.369 Sum_probs=63.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
+-|.|+++|..+||||+|+..|+...+.++ +|.....+..
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T----~tS~e~n~~~------------------------------------ 41 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPT----VTSMENNIAY------------------------------------ 41 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B-------SSEEEEC------------------------------------
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCe----eccccCCceE------------------------------------
Confidence 358999999999999999999998754322 2211110000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHH--HhcCCCeEEEEEecCCCccccHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRS--YVEKPSCIILAISPANQDIATSD 191 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~--yi~~~~~iIL~V~~a~~d~~~~~ 191 (461)
.+..+....+.+||+||..+.. ..+... |+.++.+||++|.++...-...+
T Consensus 42 ---------------~~~~~~~~~~~lvD~PGH~rlr------------~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~ 94 (181)
T PF09439_consen 42 ---------------NVNNSKGKKLRLVDIPGHPRLR------------SKLLDELKYLSNAKGIIFVVDSSTDQKELRD 94 (181)
T ss_dssp ---------------CGSSTCGTCECEEEETT-HCCC------------HHHHHHHHHHGGEEEEEEEEETTTHHHHHHH
T ss_pred ---------------EeecCCCCEEEEEECCCcHHHH------------HHHHHhhhchhhCCEEEEEEeCccchhhHHH
Confidence 0112334678999999988752 223333 68888876666655432111112
Q ss_pred HHH------HHHHhCCCCCceEEEeccCCccCC
Q 012559 192 AIK------LAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 192 ~l~------l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
+.+ ...+..+.+.|++++.||.|+...
T Consensus 95 ~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 95 VAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp HHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred HHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 111 112334678999999999998753
No 245
>COG0699 Predicted GTPases (dynamin-related) [General function prediction only]
Probab=98.73 E-value=5.7e-08 Score=103.76 Aligned_cols=330 Identities=25% Similarity=0.285 Sum_probs=237.5
Q ss_pred cchhhhcCCCCcccChHHHHHHHHHHhhhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHH
Q 012559 85 DYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIEN 164 (461)
Q Consensus 85 ~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~ 164 (461)
++..+.+.+...+.++..++.+....+....+...++...++.+.+..+....++.+|.||+...+...++..+......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (546)
T COG0699 2 EEFEFTHAPIFRFLDFSRVRSEKEKETLKDDGRNSGITEVIIELKIAAERLLQLTDVDLPGLRKVPLSLEPEDIAQEDEL 81 (546)
T ss_pred CcchhcccchhhhhhHHHHHHHHHHHHhhcccccCCCccccchhhhhhhHHHHhhccccCCccccccccCchhhHHHHHH
Confidence 45566677777888999999999988888888888999999999999999999999999999999988888887776667
Q ss_pred HHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCccCCCccHHHHHhCcccccCCCeeEEEeCC
Q 012559 165 MVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRS 244 (461)
Q Consensus 165 ~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s 244 (461)
+-..++..++++|.....++.+..+......++..++ +.++.+.++.+.+.... .+.++..+.+..
T Consensus 82 ~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 147 (546)
T COG0699 82 LDLGKIEIENALILLGIAPNADEEAELSIEVIREADR-------VPTKINFLNGGTNLTLI-------LGNGDVLVVDAL 147 (546)
T ss_pred HHhhHHHHHHHHHhcchhhhhhhccchhhHhhhhhcc-------hhHHHHHHhcCCceeee-------eccccccccCch
Confidence 8888888888899999999988888888877777655 77888777665432211 456666777677
Q ss_pred hhhhcccccHHHHHHHHHhhhccCCCCccchhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCCC
Q 012559 245 QADINKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERVIRQRIPSIIALINKNIDEINAELDRIGRPI 324 (461)
Q Consensus 245 ~~~~~~~~~~~~~~~~E~~ff~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~~L~~lg~~~ 324 (461)
..++............+..+|..++.+......++...+...+...+..++....|+........... .++..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~- 220 (546)
T COG0699 148 ETDIQLLKTALEALVKELEYFAEHPLLEDNEKLVLLPYLKKLLSKILELHLRLLPKYDKLQDVIQLSQ------DLFEN- 220 (546)
T ss_pred hHHHHhcccchHHHHHHHHHhhcCccccccccccCChhhhhhhhhhHHHHHHhcChhhhhHhhhcccc------cccch-
Confidence 77777777777788889999999998888777788889999999999888888777655444333322 22211
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHhcCCccCCchhHhhhhchhHHHhccCCcccccchhhHHHHHHhhcCCCCCCCCCh
Q 012559 325 GVDSGAQLYTILEMCRAFERVFKEHLDGGRAGGDRIYGVFDHQLPAALKKLPFDRHLSTRNVQKVVSEADGYQPHLIAPE 404 (461)
Q Consensus 325 ~~~~~~~~~~l~~~~~~f~~~~~~~i~g~~~gg~~i~~~f~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~g~~p~~~~pe 404 (461)
.+......|...+....+ |+++... ...+.....+....+....-++.|.+|..+...
T Consensus 221 ---------~~~~~~~~~~~~~~~~~~-----~~~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (546)
T COG0699 221 ---------EVLAVIQTLLKRLSELVR-----GARIRLN--------IILFSDLEEVSDSPVLLKELASKGERPSLLSGL 278 (546)
T ss_pred ---------HHHHHHHHHHHHHHHHhc-----cchhhhh--------hcccchHHHhhhhhhHHHHHcccCCCccccccc
Confidence 233444555555553333 3333333 111111122344556667777888888777788
Q ss_pred HHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHhhhhhhccchHhHHHHhc
Q 012559 405 QGYRRLIDGSISYFKGPAEASVDAVHFVLKELVRKSIAETEQQKLWKNFVMKAG 458 (461)
Q Consensus 405 ~~f~~li~~~i~~l~~P~~~c~~~v~~~l~~~v~~~~~~~~~~~rfp~l~~~~~ 458 (461)
.++...+..++..+..++..|+..+...+.++.-... ..+...+||.+.....
T Consensus 279 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~ 331 (546)
T COG0699 279 TLLDTLVETPIGQFDTQINQLLRKLISELVRILLKEL-ESASSSPFPKLSEALE 331 (546)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccccccchhhHHHHH
Confidence 9999999999998888888776655555555422111 3346788888877654
No 246
>PTZ00416 elongation factor 2; Provisional
Probab=98.73 E-value=4.2e-08 Score=109.37 Aligned_cols=66 Identities=17% Similarity=0.217 Sum_probs=50.1
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCc
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 215 (461)
..++|+||||..+. ..-+...+...|+ +++|+++..++..+.. .+++.+...+.|.|+|+||+|+
T Consensus 92 ~~i~liDtPG~~~f-------------~~~~~~al~~~D~-ailVvda~~g~~~~t~-~~~~~~~~~~~p~iv~iNK~D~ 156 (836)
T PTZ00416 92 FLINLIDSPGHVDF-------------SSEVTAALRVTDG-ALVVVDCVEGVCVQTE-TVLRQALQERIRPVLFINKVDR 156 (836)
T ss_pred eEEEEEcCCCHHhH-------------HHHHHHHHhcCCe-EEEEEECCCCcCccHH-HHHHHHHHcCCCEEEEEEChhh
Confidence 45899999998663 2335677888896 4556677777776654 4677777778899999999999
Q ss_pred c
Q 012559 216 M 216 (461)
Q Consensus 216 ~ 216 (461)
.
T Consensus 157 ~ 157 (836)
T PTZ00416 157 A 157 (836)
T ss_pred h
Confidence 7
No 247
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.72 E-value=4.1e-07 Score=90.42 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
....|.|.|.+|||||||+++|...
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~ 79 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMH 79 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4467999999999999999998754
No 248
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.72 E-value=4.9e-08 Score=100.54 Aligned_cols=24 Identities=21% Similarity=0.480 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCC
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
.-.|+++|+-++|||||+++|+|.
T Consensus 9 ~~ni~v~Gh~d~GKSTL~~~L~~~ 32 (411)
T PRK04000 9 EVNIGMVGHVDHGKTTLVQALTGV 32 (411)
T ss_pred cEEEEEEccCCCCHHHHHHHhhCe
Confidence 356999999999999999999875
No 249
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.71 E-value=5.7e-08 Score=108.52 Aligned_cols=67 Identities=16% Similarity=0.182 Sum_probs=49.0
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCC
Q 012559 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (461)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 214 (461)
...++||||||..+. ..-+...++.+|+. ++|++|..++..+... +.+.+...+.++|+++||+|
T Consensus 97 ~~~inliDtPGh~dF-------------~~e~~~al~~~D~a-ilVvda~~Gv~~~t~~-~~~~~~~~~~p~i~~iNK~D 161 (843)
T PLN00116 97 EYLINLIDSPGHVDF-------------SSEVTAALRITDGA-LVVVDCIEGVCVQTET-VLRQALGERIRPVLTVNKMD 161 (843)
T ss_pred ceEEEEECCCCHHHH-------------HHHHHHHHhhcCEE-EEEEECCCCCcccHHH-HHHHHHHCCCCEEEEEECCc
Confidence 356789999997654 23346677888864 5555677777665543 66777777899999999999
Q ss_pred cc
Q 012559 215 LM 216 (461)
Q Consensus 215 ~~ 216 (461)
..
T Consensus 162 ~~ 163 (843)
T PLN00116 162 RC 163 (843)
T ss_pred cc
Confidence 97
No 250
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.71 E-value=2.5e-07 Score=86.82 Aligned_cols=100 Identities=17% Similarity=0.196 Sum_probs=53.0
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHH---HHhCCCCCceEEEecc
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLA---REVDPTGERTFGVLTK 212 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~---~~~d~~~~rti~VltK 212 (461)
..+.++||||..+. ..+...|+.+.+++| +|.+.+...+-.....+. .... ...+.++|.||
T Consensus 58 i~i~~~Dt~g~~~~-------------~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK 122 (215)
T PTZ00132 58 ICFNVWDTAGQEKF-------------GGLRDGYYIKGQCAI-IMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNK 122 (215)
T ss_pred EEEEEEECCCchhh-------------hhhhHHHhccCCEEE-EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEC
Confidence 56789999995432 345567888888655 455555333222222222 2222 34788899999
Q ss_pred CCccCCCccHHHHHhCcccccCCCeeEEEeCChhhhcccc
Q 012559 213 LDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNV 252 (461)
Q Consensus 213 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 252 (461)
+|+.+..... +... ........|+.+...++.++.+..
T Consensus 123 ~Dl~~~~~~~-~~~~-~~~~~~~~~~e~Sa~~~~~v~~~f 160 (215)
T PTZ00132 123 VDVKDRQVKA-RQIT-FHRKKNLQYYDISAKSNYNFEKPF 160 (215)
T ss_pred ccCccccCCH-HHHH-HHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9986432111 1111 111223456666666555544333
No 251
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=6.8e-08 Score=104.29 Aligned_cols=135 Identities=16% Similarity=0.232 Sum_probs=91.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
+...|.|+|+-.+|||||.++|+-.. |..++ +.++. .|..+.||.+.+++
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~t------G~i~k-~G~v~----------------~g~~~~D~~e~Eqe------- 58 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYT------GIISK-IGEVH----------------DGAATMDWMEQEQE------- 58 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHc------CCcCC-Ccccc----------------CCCccCCCcHHHHh-------
Confidence 67889999999999999999998542 33232 22111 12345566554322
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
++-++....+.+...+ ...++||||||..+. ..-|.+.++-.|. .++|++|..+...+...
T Consensus 59 ---RGITI~saa~s~~~~~--~~~iNlIDTPGHVDF-------------t~EV~rslrvlDg-avvVvdaveGV~~QTEt 119 (697)
T COG0480 59 ---RGITITSAATTLFWKG--DYRINLIDTPGHVDF-------------TIEVERSLRVLDG-AVVVVDAVEGVEPQTET 119 (697)
T ss_pred ---cCCEEeeeeeEEEEcC--ceEEEEeCCCCcccc-------------HHHHHHHHHhhcc-eEEEEECCCCeeecHHH
Confidence 1223334444443333 478999999999987 3346666777775 55677777777776655
Q ss_pred HHHHHhCCCCCceEEEeccCCccCC
Q 012559 194 KLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
+.|+.+..+.|.|+++||+|.+..
T Consensus 120 -v~rqa~~~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 120 -VWRQADKYGVPRILFVNKMDRLGA 143 (697)
T ss_pred -HHHHHhhcCCCeEEEEECcccccc
Confidence 778888889999999999999844
No 252
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.70 E-value=2.3e-07 Score=92.83 Aligned_cols=150 Identities=18% Similarity=0.231 Sum_probs=86.4
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh--
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR-- 113 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~-- 113 (461)
-.|+|||.-++|||||+|++++.-++|.-+..--| ...++++-.....
T Consensus 18 IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k------------------------------~Ra~DELpqs~~Gkt 67 (492)
T TIGR02836 18 IYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDK------------------------------ERAQDELPQSAAGKT 67 (492)
T ss_pred EEEEEEcCCCCChHHHHHHHHhhhccccccchhHH------------------------------hHHHhccCcCCCCCC
Confidence 57999999999999999999999776643311000 0000000000000
Q ss_pred -hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccH----------------HHHHHHHHHHHhc-CCCe
Q 012559 114 -ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESI----------------VEDIENMVRSYVE-KPSC 175 (461)
Q Consensus 114 -~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~----------------~~~i~~~v~~yi~-~~~~ 175 (461)
.+...+-+.++.+.+.....-..++.||||+|+.....-|.-+.. .+..+-=+++-+. +++
T Consensus 68 ItTTePkfvP~kAvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhst- 146 (492)
T TIGR02836 68 IMTTEPKFVPNEAVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHST- 146 (492)
T ss_pred cccCCCccccCcceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCc-
Confidence 011122334445555555444568999999999876433321111 1111222667777 566
Q ss_pred EEEEEe-cCC------CccccHHHHHHHHHhCCCCCceEEEeccCCccC
Q 012559 176 IILAIS-PAN------QDIATSDAIKLAREVDPTGERTFGVLTKLDLMD 217 (461)
Q Consensus 176 iIL~V~-~a~------~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~ 217 (461)
|-++|+ +++ .+.... -.++..++...+.|.|+|+||.|-..
T Consensus 147 IgivVtTDgsi~dI~Re~y~~a-Ee~~i~eLk~~~kPfiivlN~~dp~~ 194 (492)
T TIGR02836 147 IGVVVTTDGTITDIPREDYVEA-EERVIEELKELNKPFIILLNSTHPYH 194 (492)
T ss_pred EEEEEEcCCCccccccccchHH-HHHHHHHHHhcCCCEEEEEECcCCCC
Confidence 555555 764 222222 23477888888999999999999543
No 253
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.69 E-value=1.1e-07 Score=84.85 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDF 60 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~ 60 (461)
+|+|+|+.++|||||+..+++..|
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f 25 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSY 25 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC
Confidence 589999999999999999887766
No 254
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.69 E-value=3.6e-08 Score=81.86 Aligned_cols=104 Identities=23% Similarity=0.298 Sum_probs=67.0
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 115 (461)
.+|++||..++||+||.++|-|...+++.+..++
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykKTQAve---------------------------------------------- 35 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKKTQAVE---------------------------------------------- 35 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhcccceee----------------------------------------------
Confidence 4799999999999999999999988665432111
Q ss_pred CCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHH
Q 012559 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (461)
Q Consensus 116 g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 195 (461)
..++ -.|||||-+-.. ...-....-...+++ +|..|.+++...+.-..
T Consensus 36 --------------~~d~-----~~IDTPGEy~~~---------~~~Y~aL~tt~~dad-vi~~v~~and~~s~f~p--- 83 (148)
T COG4917 36 --------------FNDK-----GDIDTPGEYFEH---------PRWYHALITTLQDAD-VIIYVHAANDPESRFPP--- 83 (148)
T ss_pred --------------ccCc-----cccCCchhhhhh---------hHHHHHHHHHhhccc-eeeeeecccCccccCCc---
Confidence 1111 158999976421 111112233345666 67778888765544322
Q ss_pred HHHhCCCCCceEEEeccCCccCC
Q 012559 196 AREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 196 ~~~~d~~~~rti~VltK~D~~~~ 218 (461)
.-.++-..++|||+||.|+.++
T Consensus 84 -~f~~~~~k~vIgvVTK~DLaed 105 (148)
T COG4917 84 -GFLDIGVKKVIGVVTKADLAED 105 (148)
T ss_pred -ccccccccceEEEEecccccch
Confidence 2244555779999999999953
No 255
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.68 E-value=9.3e-08 Score=99.18 Aligned_cols=68 Identities=15% Similarity=0.264 Sum_probs=40.8
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCc---cccHH--HHHHHHHhCCCCCceEE
Q 012559 134 NVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD---IATSD--AIKLAREVDPTGERTFG 208 (461)
Q Consensus 134 ~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d---~~~~~--~l~l~~~~d~~~~rti~ 208 (461)
+...++||||||..+. ...+..++..+|+++| |++++.. ...+. ...+++.+. ..+.|+
T Consensus 83 ~~~~i~iiDtpGh~~f-------------~~~~~~~~~~aD~~il-VvDa~~~~~~~~~~t~~~~~~~~~~~--~~~iIV 146 (426)
T TIGR00483 83 DKYEVTIVDCPGHRDF-------------IKNMITGASQADAAVL-VVAVGDGEFEVQPQTREHAFLARTLG--INQLIV 146 (426)
T ss_pred CCeEEEEEECCCHHHH-------------HHHHHhhhhhCCEEEE-EEECCCCCcccCCchHHHHHHHHHcC--CCeEEE
Confidence 3468999999994321 2234446678896555 5555543 22222 223444432 246889
Q ss_pred EeccCCccC
Q 012559 209 VLTKLDLMD 217 (461)
Q Consensus 209 VltK~D~~~ 217 (461)
|+||+|+.+
T Consensus 147 viNK~Dl~~ 155 (426)
T TIGR00483 147 AINKMDSVN 155 (426)
T ss_pred EEEChhccC
Confidence 999999974
No 256
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=2.1e-07 Score=94.89 Aligned_cols=146 Identities=16% Similarity=0.202 Sum_probs=95.5
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHh
Q 012559 32 WEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDET 111 (461)
Q Consensus 32 ~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~ 111 (461)
..+.|.|-|+|+-..||||||.+|-+.++.....|-.|
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGIT------------------------------------------ 187 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGIT------------------------------------------ 187 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCcc------------------------------------------
Confidence 35789999999999999999999998876333333222
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH
Q 012559 112 DRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD 191 (461)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~ 191 (461)
..+=...+.-|+...+||.||||.-.+ ..|-.+-..-.| |+++|+.|..+...|.
T Consensus 188 -----------QhIGAF~V~~p~G~~iTFLDTPGHaAF-------------~aMRaRGA~vtD-IvVLVVAadDGVmpQT 242 (683)
T KOG1145|consen 188 -----------QHIGAFTVTLPSGKSITFLDTPGHAAF-------------SAMRARGANVTD-IVVLVVAADDGVMPQT 242 (683)
T ss_pred -----------ceeceEEEecCCCCEEEEecCCcHHHH-------------HHHHhccCcccc-EEEEEEEccCCccHhH
Confidence 222223355566789999999995443 344444444455 8888888888777665
Q ss_pred HHHHHHHhCCCCCceEEEeccCCccCCCccHHHH----HhCcccccC-CCeeEEEeCChhh
Q 012559 192 AIKLAREVDPTGERTFGVLTKLDLMDKGTNALEV----LEGRSYRLQ-HPWVGIVNRSQAD 247 (461)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~----l~~~~~~l~-~g~~~v~~~s~~~ 247 (461)
.. -++-....+.|+|+.+||+|.- +++..++ +........ -|-+-+++.|+..
T Consensus 243 ~E-aIkhAk~A~VpiVvAinKiDkp--~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~ 300 (683)
T KOG1145|consen 243 LE-AIKHAKSANVPIVVAINKIDKP--GANPEKVKRELLSQGIVVEDLGGDVQVIPISALT 300 (683)
T ss_pred HH-HHHHHHhcCCCEEEEEeccCCC--CCCHHHHHHHHHHcCccHHHcCCceeEEEeeccc
Confidence 43 3344444579999999999965 4444333 332222222 3567778888764
No 257
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.65 E-value=1.1e-07 Score=98.61 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=21.9
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~ 59 (461)
-.|+++|+-.+|||||+.+|+|..
T Consensus 35 ~~ig~~GHVDhGKTtLv~aLtg~~ 58 (460)
T PTZ00327 35 INIGTIGHVAHGKSTVVKALSGVK 58 (460)
T ss_pred EEEEEEccCCCCHHHHHHHHhCCC
Confidence 459999999999999999999874
No 258
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.65 E-value=4.6e-07 Score=78.78 Aligned_cols=157 Identities=17% Similarity=0.233 Sum_probs=97.4
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
--+|.++|--||||||+++.+.|.+. +.-..|...
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~---~~i~pt~gf------------------------------------------ 50 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDT---DTISPTLGF------------------------------------------ 50 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCc---cccCCccce------------------------------------------
Confidence 47899999999999999999999852 111122111
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHH
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 194 (461)
--+. ++ .....|+++|.-|.... ++..++|....|++|.+|.+ .....-++...
T Consensus 51 -------~Ikt--l~---~~~~~L~iwDvGGq~~l-------------r~~W~nYfestdglIwvvDs-sD~~r~~e~~~ 104 (185)
T KOG0073|consen 51 -------QIKT--LE---YKGYTLNIWDVGGQKTL-------------RSYWKNYFESTDGLIWVVDS-SDRMRMQECKQ 104 (185)
T ss_pred -------eeEE--EE---ecceEEEEEEcCCcchh-------------HHHHHHhhhccCeEEEEEEC-chHHHHHHHHH
Confidence 1011 11 12368999999996543 78899999999987766665 44444455444
Q ss_pred HHHHh----CCCCCceEEEeccCCccCCC--ccHHHHHhCcccccCCCe--eEEEeCChhhhcccccHHHHHHHHH
Q 012559 195 LAREV----DPTGERTFGVLTKLDLMDKG--TNALEVLEGRSYRLQHPW--VGIVNRSQADINKNVDMIAARRKER 262 (461)
Q Consensus 195 l~~~~----d~~~~rti~VltK~D~~~~~--~~~~~~l~~~~~~l~~g~--~~v~~~s~~~~~~~~~~~~~~~~E~ 262 (461)
.++.+ .-.|.+.+++.||.|+...- .++..++.-+.+.....| +.+...++.++.++++.+.....++
T Consensus 105 ~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 105 ELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMSR 180 (185)
T ss_pred HHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHHHH
Confidence 33332 23478999999999997321 122222221122223333 4455567777777888777666553
No 259
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.65 E-value=5.4e-08 Score=94.88 Aligned_cols=139 Identities=22% Similarity=0.360 Sum_probs=72.5
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhcC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 116 (461)
.|.|||..|+|||||+|+|++..+.+......+... ...
T Consensus 6 nImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~-----------------------------------------~~~ 44 (281)
T PF00735_consen 6 NIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSA-----------------------------------------SIS 44 (281)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSS---------S-----------------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHhccccccccccccccc-----------------------------------------ccc
Confidence 589999999999999999999877544311100000 000
Q ss_pred CCCcccCccEEEEEecCCCCCcEEEeCCCCCccccC-CCCccHHHHHHHHHHHHhcC-------------CCeEEEEEec
Q 012559 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVE-GQPESIVEDIENMVRSYVEK-------------PSCIILAISP 182 (461)
Q Consensus 117 ~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~-~~~~~~~~~i~~~v~~yi~~-------------~~~iIL~V~~ 182 (461)
....+......+. ...-..+|++|||||+.+.-.. .....+...+.+.-..|+.+ .|+++.++.|
T Consensus 45 ~~~~i~~~~~~l~-e~~~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~p 123 (281)
T PF00735_consen 45 RTLEIEERTVELE-ENGVKLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPP 123 (281)
T ss_dssp SCEEEEEEEEEEE-ETCEEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-T
T ss_pred cccceeeEEEEec-cCCcceEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcC
Confidence 0000111111111 1112257999999999764211 01122334444444555542 2454445555
Q ss_pred CCCccccHHHHHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 183 ANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 183 a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
....+...|. ...+++.. ..++|-||.|+|.+.+.
T Consensus 124 t~~~L~~~Di-~~mk~Ls~-~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 124 TGHGLKPLDI-EFMKRLSK-RVNVIPVIAKADTLTPE 158 (281)
T ss_dssp TSSSS-HHHH-HHHHHHTT-TSEEEEEESTGGGS-HH
T ss_pred CCccchHHHH-HHHHHhcc-cccEEeEEecccccCHH
Confidence 5556665555 47788876 48899999999999754
No 260
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.64 E-value=6.9e-08 Score=100.32 Aligned_cols=66 Identities=21% Similarity=0.262 Sum_probs=40.9
Q ss_pred CCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcc---------ccHHHHHHHHHhCCCC
Q 012559 133 PNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI---------ATSDAIKLAREVDPTG 203 (461)
Q Consensus 133 p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~---------~~~~~l~l~~~~d~~~ 203 (461)
.+...++||||||..+. +.+ +...+..+|.++ +|+++..+. .+.+.+.+++ ..|
T Consensus 82 ~~~~~i~lIDtPGh~~f------------~~~-~~~g~~~aD~ai-lVVda~~G~~e~~~~~~~qT~eh~~~~~---~~g 144 (446)
T PTZ00141 82 TPKYYFTIIDAPGHRDF------------IKN-MITGTSQADVAI-LVVASTAGEFEAGISKDGQTREHALLAF---TLG 144 (446)
T ss_pred cCCeEEEEEECCChHHH------------HHH-HHHhhhhcCEEE-EEEEcCCCceecccCCCccHHHHHHHHH---HcC
Confidence 45578999999995432 233 344567888655 456666543 2233333444 446
Q ss_pred Cc-eEEEeccCCc
Q 012559 204 ER-TFGVLTKLDL 215 (461)
Q Consensus 204 ~r-ti~VltK~D~ 215 (461)
.+ .|+|+||+|.
T Consensus 145 i~~iiv~vNKmD~ 157 (446)
T PTZ00141 145 VKQMIVCINKMDD 157 (446)
T ss_pred CCeEEEEEEcccc
Confidence 65 5789999994
No 261
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=2.7e-07 Score=94.67 Aligned_cols=118 Identities=16% Similarity=0.242 Sum_probs=80.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhh
Q 012559 33 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (461)
Q Consensus 33 ~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~ 112 (461)
.+.|-|+|+|+--.||||||-+|=+..+-+...|--|....
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIG--------------------------------------- 43 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIG--------------------------------------- 43 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEee---------------------------------------
Confidence 46899999999999999999999988775555544332221
Q ss_pred hhcCCCCcccCccEEEEEecC--CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccH
Q 012559 113 RITGKSKQISNIPIQLSIYSP--NVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS 190 (461)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~p--~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~ 190 (461)
..++..+ +.+.|+|+||||.-.+ ..|=.+-.+-.| |+++|++++..+..|
T Consensus 44 --------------A~~v~~~~~~~~~itFiDTPGHeAF-------------t~mRaRGa~vtD-IaILVVa~dDGv~pQ 95 (509)
T COG0532 44 --------------AYQVPLDVIKIPGITFIDTPGHEAF-------------TAMRARGASVTD-IAILVVAADDGVMPQ 95 (509)
T ss_pred --------------eEEEEeccCCCceEEEEcCCcHHHH-------------HHHHhcCCcccc-EEEEEEEccCCcchh
Confidence 1223322 4588999999996543 333333334456 667777888777766
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 191 DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
... -...+...+.|+|+.+||+|+.+.
T Consensus 96 TiE-AI~hak~a~vP~iVAiNKiDk~~~ 122 (509)
T COG0532 96 TIE-AINHAKAAGVPIVVAINKIDKPEA 122 (509)
T ss_pred HHH-HHHHHHHCCCCEEEEEecccCCCC
Confidence 543 223334458999999999999844
No 262
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.62 E-value=5.3e-07 Score=76.91 Aligned_cols=114 Identities=25% Similarity=0.337 Sum_probs=74.3
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 115 (461)
..+.+||-|+|||||+.|.+..-+++ ++ -+.|+
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~~~-ed-miptv--------------------------------------------- 53 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQYL-ED-MIPTV--------------------------------------------- 53 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeeccch-hh-hcccc---------------------------------------------
Confidence 68999999999999999988764441 00 01111
Q ss_pred CCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccc---cHHH
Q 012559 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIA---TSDA 192 (461)
Q Consensus 116 g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~---~~~~ 192 (461)
| .++.-.+..+..+.++|+||.-.. +.|...|.+..++|+.+|.+|..+-- .++-
T Consensus 54 G---------fnmrk~tkgnvtiklwD~gGq~rf-------------rsmWerycR~v~aivY~VDaad~~k~~~sr~EL 111 (186)
T KOG0075|consen 54 G---------FNMRKVTKGNVTIKLWDLGGQPRF-------------RSMWERYCRGVSAIVYVVDAADPDKLEASRSEL 111 (186)
T ss_pred c---------ceeEEeccCceEEEEEecCCCccH-------------HHHHHHHhhcCcEEEEEeecCCcccchhhHHHH
Confidence 1 112233344567889999997664 88999999999976655655553221 1222
Q ss_pred HHHHHHhCCCCCceEEEeccCCccCC
Q 012559 193 IKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
..++-.-.-.|.|.++.-||.|+-+.
T Consensus 112 ~~LL~k~~l~gip~LVLGnK~d~~~A 137 (186)
T KOG0075|consen 112 HDLLDKPSLTGIPLLVLGNKIDLPGA 137 (186)
T ss_pred HHHhcchhhcCCcEEEecccccCccc
Confidence 23333333458999999999998754
No 263
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=98.59 E-value=4.6e-08 Score=86.57 Aligned_cols=119 Identities=16% Similarity=0.262 Sum_probs=77.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
.|..|++.|++|+|||||+|.++..+|. ...
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~-------------------------------------------------~qy 38 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFS-------------------------------------------------QQY 38 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHH-------------------------------------------------HHh
Confidence 5789999999999999999999998871 011
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEE-ecCCCcccc-HH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAI-SPANQDIAT-SD 191 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V-~~a~~d~~~-~~ 191 (461)
....+..|-.+.+.|. .....|.++||.|..+. ..+-..+.+.+||.+|+. ++....+.+ ..
T Consensus 39 kaTIgadFltKev~Vd---~~~vtlQiWDTAGQERF-------------qsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~ 102 (210)
T KOG0394|consen 39 KATIGADFLTKEVQVD---DRSVTLQIWDTAGQERF-------------QSLGVAFYRGADCCVLVYDVNNPKSFENLEN 102 (210)
T ss_pred ccccchhheeeEEEEc---CeEEEEEEEecccHHHh-------------hhcccceecCCceEEEEeecCChhhhccHHH
Confidence 1112233444444332 34467999999997765 566678899999866652 221112222 11
Q ss_pred HH-HHHHHh---CCCCCceEEEeccCCccC
Q 012559 192 AI-KLAREV---DPTGERTFGVLTKLDLMD 217 (461)
Q Consensus 192 ~l-~l~~~~---d~~~~rti~VltK~D~~~ 217 (461)
+. +++... +|..-|.|++.||+|.-+
T Consensus 103 Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~ 132 (210)
T KOG0394|consen 103 WRKEFLIQASPQDPETFPFVILGNKIDVDG 132 (210)
T ss_pred HHHHHHHhcCCCCCCcccEEEEcccccCCC
Confidence 21 244444 466789999999999965
No 264
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=1.6e-07 Score=80.12 Aligned_cols=121 Identities=17% Similarity=0.279 Sum_probs=85.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
-|=.||+||.-++||+.|+..++.- +||-|.|.+--.-..
T Consensus 6 flfkivlvgnagvgktclvrrftqg-lfppgqgatigvdfm--------------------------------------- 45 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQG-LFPPGQGATIGVDFM--------------------------------------- 45 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhcc-CCCCCCCceeeeeEE---------------------------------------
Confidence 4678999999999999999999976 457776543221111
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEec-CCCc-cccHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISP-ANQD-IATSD 191 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~-a~~d-~~~~~ 191 (461)
+-.+++.+ ....|.+|||.|..+. +.++.+|.+.++++||+..- +... -...+
T Consensus 46 -----------iktvev~g-ekiklqiwdtagqerf-------------rsitqsyyrsahalilvydiscqpsfdclpe 100 (213)
T KOG0095|consen 46 -----------IKTVEVNG-EKIKLQIWDTAGQERF-------------RSITQSYYRSAHALILVYDISCQPSFDCLPE 100 (213)
T ss_pred -----------EEEEEECC-eEEEEEEeeccchHHH-------------HHHHHHHhhhcceEEEEEecccCcchhhhHH
Confidence 11222332 2367899999996654 88999999999988877432 2211 13356
Q ss_pred HHHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 192 AIKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
++.-+.++.....-.|+|-||+|+.+..
T Consensus 101 wlreie~yan~kvlkilvgnk~d~~drr 128 (213)
T KOG0095|consen 101 WLREIEQYANNKVLKILVGNKIDLADRR 128 (213)
T ss_pred HHHHHHHHhhcceEEEeeccccchhhhh
Confidence 7777777777777889999999998765
No 265
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.59 E-value=9.2e-07 Score=78.71 Aligned_cols=137 Identities=13% Similarity=0.136 Sum_probs=82.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhh
Q 012559 33 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (461)
Q Consensus 33 ~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~ 112 (461)
..-..|+|+|.+++||||++.+++.... +.-.+..+.--. +
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~-v~t~~~~~~~s~---------------------k----------------- 48 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPL-VITEADASSVSG---------------------K----------------- 48 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhcccc-ceeecccccccc---------------------c-----------------
Confidence 4568999999999999999999998752 222111110000 0
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHH
Q 012559 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (461)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~ 192 (461)
.-....++-+.-.+++. +...+.|+||||..+. +-|..-+.+.+..+|++|.++. +... .+
T Consensus 49 --~kr~tTva~D~g~~~~~--~~~~v~LfgtPGq~RF-------------~fm~~~l~~ga~gaivlVDss~-~~~~-~a 109 (187)
T COG2229 49 --GKRPTTVAMDFGSIELD--EDTGVHLFGTPGQERF-------------KFMWEILSRGAVGAIVLVDSSR-PITF-HA 109 (187)
T ss_pred --cccceeEeecccceEEc--CcceEEEecCCCcHHH-------------HHHHHHHhCCcceEEEEEecCC-Ccch-HH
Confidence 00001122222222222 3357899999998774 5667777788887666665443 2222 44
Q ss_pred HHHHHHhCCCC-CceEEEeccCCccCCC--ccHHHHHh
Q 012559 193 IKLAREVDPTG-ERTFGVLTKLDLMDKG--TNALEVLE 227 (461)
Q Consensus 193 l~l~~~~d~~~-~rti~VltK~D~~~~~--~~~~~~l~ 227 (461)
..+...+.... .|.++.+||.|+.+.. +...+++.
T Consensus 110 ~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~ 147 (187)
T COG2229 110 EEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALK 147 (187)
T ss_pred HHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHH
Confidence 55556555544 8999999999998643 23445544
No 266
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.56 E-value=1e-07 Score=86.28 Aligned_cols=31 Identities=32% Similarity=0.325 Sum_probs=26.4
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCC
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGS 65 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~ 65 (461)
..+|+|+|.+|+|||||+|+|+|....+++.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~ 147 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGA 147 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecC
Confidence 4689999999999999999999987655443
No 267
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.54 E-value=1.2e-07 Score=84.45 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=24.2
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCcc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPR 63 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~ 63 (461)
..|+++|.+|+|||||+|+|.|....++
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~~~~~~~ 130 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRSKKVCKV 130 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhcCCceee
Confidence 4688999999999999999999876443
No 268
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=98.54 E-value=1.8e-07 Score=81.10 Aligned_cols=152 Identities=22% Similarity=0.297 Sum_probs=90.1
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 115 (461)
=+++|||+.-+||||||..++.-+| |--+ -|++ - .||-. +.
T Consensus 9 frlivigdstvgkssll~~ft~gkf-aels-----dptv-----------g-----------vdffa----------rl- 49 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKF-AELS-----DPTV-----------G-----------VDFFA----------RL- 49 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCcc-cccC-----CCcc-----------c-----------hHHHH----------HH-
Confidence 3689999999999999999998776 2111 2220 0 01110 00
Q ss_pred CCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---HHH
Q 012559 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---SDA 192 (461)
Q Consensus 116 g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~---~~~ 192 (461)
+++.......|.|+||.|..+. +.++++|.++.-. +|+|-+.++..+- ..+
T Consensus 50 ------------ie~~pg~riklqlwdtagqerf-------------rsitksyyrnsvg-vllvyditnr~sfehv~~w 103 (213)
T KOG0091|consen 50 ------------IELRPGYRIKLQLWDTAGQERF-------------RSITKSYYRNSVG-VLLVYDITNRESFEHVENW 103 (213)
T ss_pred ------------HhcCCCcEEEEEEeeccchHHH-------------HHHHHHHhhcccc-eEEEEeccchhhHHHHHHH
Confidence 0122223357899999996654 8899999999875 4455444432222 223
Q ss_pred HHHHH-HhC-CCCCceEEEeccCCccCCCc----cHHHHHhCcccccCCCeeEEEeCChhhhcccccHHH
Q 012559 193 IKLAR-EVD-PTGERTFGVLTKLDLMDKGT----NALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIA 256 (461)
Q Consensus 193 l~l~~-~~d-~~~~rti~VltK~D~~~~~~----~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 256 (461)
++-|+ .+. |...-..+|-+|+|+..... ++..+ ....+.-|+....+++.++++..+++.
T Consensus 104 ~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEkl----Aa~hgM~FVETSak~g~NVeEAF~mla 169 (213)
T KOG0091|consen 104 VKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKL----AASHGMAFVETSAKNGCNVEEAFDMLA 169 (213)
T ss_pred HHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHH----HHhcCceEEEecccCCCcHHHHHHHHH
Confidence 32222 223 55555677999999985442 12222 234455677878887776666555543
No 269
>PRK12740 elongation factor G; Reviewed
Probab=98.53 E-value=1.5e-07 Score=103.19 Aligned_cols=70 Identities=16% Similarity=0.171 Sum_probs=48.8
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccC
Q 012559 134 NVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKL 213 (461)
Q Consensus 134 ~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~ 213 (461)
+...++||||||..+. ...+..++..+|+ +++|++++.+...+. ..+.+.+...+.|.++|+||+
T Consensus 58 ~~~~i~liDtPG~~~~-------------~~~~~~~l~~aD~-vllvvd~~~~~~~~~-~~~~~~~~~~~~p~iiv~NK~ 122 (668)
T PRK12740 58 KGHKINLIDTPGHVDF-------------TGEVERALRVLDG-AVVVVCAVGGVEPQT-ETVWRQAEKYGVPRIIFVNKM 122 (668)
T ss_pred CCEEEEEEECCCcHHH-------------HHHHHHHHHHhCe-EEEEEeCCCCcCHHH-HHHHHHHHHcCCCEEEEEECC
Confidence 3478999999997542 3456778888996 555556665554433 335555555688999999999
Q ss_pred CccCC
Q 012559 214 DLMDK 218 (461)
Q Consensus 214 D~~~~ 218 (461)
|....
T Consensus 123 D~~~~ 127 (668)
T PRK12740 123 DRAGA 127 (668)
T ss_pred CCCCC
Confidence 98743
No 270
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.50 E-value=2.2e-07 Score=82.54 Aligned_cols=39 Identities=28% Similarity=0.291 Sum_probs=30.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCC-cccccc
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRP 72 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~-~~Tr~p 72 (461)
..++++++|.+|+||||++|+|+|...++.+.+ .+|+.+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~ 138 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQ 138 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccce
Confidence 568999999999999999999999865554443 344444
No 271
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=98.49 E-value=1.7e-07 Score=81.10 Aligned_cols=117 Identities=19% Similarity=0.177 Sum_probs=76.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
-.-.|.+||+.++||||||-+++...|=|-..
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~------------------------------------------------ 41 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHP------------------------------------------------ 41 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCC------------------------------------------------
Confidence 35789999999999999999999887622111
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
..-++..+.-.+.+.+ +...|.+|||.|..+. +.++-+|.+.+-.|||+..-...|--..- -
T Consensus 42 ---~tIGvDFkvk~m~vdg-~~~KlaiWDTAGqErF-------------RtLTpSyyRgaqGiIlVYDVT~Rdtf~kL-d 103 (209)
T KOG0080|consen 42 ---TTIGVDFKVKVMQVDG-KRLKLAIWDTAGQERF-------------RTLTPSYYRGAQGIILVYDVTSRDTFVKL-D 103 (209)
T ss_pred ---ceeeeeEEEEEEEEcC-ceEEEEEEeccchHhh-------------hccCHhHhccCceeEEEEEccchhhHHhH-H
Confidence 0112233333344444 3468999999997665 78899999999987776543332221111 1
Q ss_pred HHHHHhCCC----CCceEEEeccCCcc
Q 012559 194 KLAREVDPT----GERTFGVLTKLDLM 216 (461)
Q Consensus 194 ~l~~~~d~~----~~rti~VltK~D~~ 216 (461)
.+++++|.. ..-.++|-||+|.-
T Consensus 104 ~W~~Eld~Ystn~diikmlVgNKiDke 130 (209)
T KOG0080|consen 104 IWLKELDLYSTNPDIIKMLVGNKIDKE 130 (209)
T ss_pred HHHHHHHhhcCCccHhHhhhcccccch
Confidence 256777643 23357899999975
No 272
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=5.7e-07 Score=79.89 Aligned_cols=121 Identities=18% Similarity=0.211 Sum_probs=78.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
-+-.++++|+.++|||+||-..+...|-|.... .
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~-----T----------------------------------------- 38 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDL-----T----------------------------------------- 38 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCccccccc-----e-----------------------------------------
Confidence 345689999999999999999999998554321 0
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccc--cHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIA--TSD 191 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~--~~~ 191 (461)
.|.. | -.-.++|.+ ....|.++||.|..+. ++.+++|.+.+-..+|+..-.+.+.- ...
T Consensus 39 -iGve--f--g~r~~~id~-k~IKlqiwDtaGqe~f-------------rsv~~syYr~a~GalLVydit~r~sF~hL~~ 99 (216)
T KOG0098|consen 39 -IGVE--F--GARMVTIDG-KQIKLQIWDTAGQESF-------------RSVTRSYYRGAAGALLVYDITRRESFNHLTS 99 (216)
T ss_pred -eeee--e--ceeEEEEcC-ceEEEEEEecCCcHHH-------------HHHHHHHhccCcceEEEEEccchhhHHHHHH
Confidence 1100 0 000011111 1245789999997664 78999999998876666443333222 244
Q ss_pred HHHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 192 AIKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
++.=+++......-++++-||+|+....
T Consensus 100 wL~D~rq~~~~NmvImLiGNKsDL~~rR 127 (216)
T KOG0098|consen 100 WLEDARQHSNENMVIMLIGNKSDLEARR 127 (216)
T ss_pred HHHHHHHhcCCCcEEEEEcchhhhhccc
Confidence 5555666654567788899999998654
No 273
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.48 E-value=2.7e-06 Score=87.12 Aligned_cols=80 Identities=21% Similarity=0.291 Sum_probs=50.6
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCc
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 215 (461)
.++.||||||.... ...+.+.+..+. ...+|+. +++|+++..+ +++...++.+...-..+-+|+||+|.
T Consensus 183 ~DvViIDTaGr~~~-----d~~lm~El~~i~--~~~~p~e-~lLVlda~~G---q~a~~~a~~F~~~~~~~g~IlTKlD~ 251 (429)
T TIGR01425 183 FDIIIVDTSGRHKQ-----EDSLFEEMLQVA--EAIQPDN-IIFVMDGSIG---QAAEAQAKAFKDSVDVGSVIITKLDG 251 (429)
T ss_pred CCEEEEECCCCCcc-----hHHHHHHHHHHh--hhcCCcE-EEEEeccccC---hhHHHHHHHHHhccCCcEEEEECccC
Confidence 68999999996553 123333333332 2235664 5666667633 44555667776555678899999999
Q ss_pred cCCCccHHHHH
Q 012559 216 MDKGTNALEVL 226 (461)
Q Consensus 216 ~~~~~~~~~~l 226 (461)
...+..+..+.
T Consensus 252 ~argG~aLs~~ 262 (429)
T TIGR01425 252 HAKGGGALSAV 262 (429)
T ss_pred CCCccHHhhhH
Confidence 87776555543
No 274
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.45 E-value=1.2e-05 Score=79.55 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=22.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
.-+.|+|+|.+|||||||++.|.+.
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 5688999999999999999999864
No 275
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.45 E-value=1.4e-06 Score=83.77 Aligned_cols=127 Identities=18% Similarity=0.268 Sum_probs=83.9
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHh
Q 012559 32 WEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDET 111 (461)
Q Consensus 32 ~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~ 111 (461)
....|.|+|||..|||||||+++|++..++|.+.=..|--|| +
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT-------------------------------------~ 217 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPT-------------------------------------L 217 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccch-------------------------------------h
Confidence 357899999999999999999999999998887666555553 0
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCC-cccc-
Q 012559 112 DRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIAT- 189 (461)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~-d~~~- 189 (461)
.. ..-|+.....+.||=|+++.- |..+...++. +..-+..+| +||-|.|.+. ++..
T Consensus 218 h~----------------a~Lpsg~~vlltDTvGFisdL----P~~LvaAF~A-TLeeVaead-lllHvvDiShP~ae~q 275 (410)
T KOG0410|consen 218 HS----------------AHLPSGNFVLLTDTVGFISDL----PIQLVAAFQA-TLEEVAEAD-LLLHVVDISHPNAEEQ 275 (410)
T ss_pred hh----------------ccCCCCcEEEEeechhhhhhC----cHHHHHHHHH-HHHHHhhcc-eEEEEeecCCccHHHH
Confidence 00 112334567899999998743 5666555443 445566777 5666666554 3333
Q ss_pred -HHHHHHHHHhCCC----CCceEEEeccCCccC
Q 012559 190 -SDAIKLAREVDPT----GERTFGVLTKLDLMD 217 (461)
Q Consensus 190 -~~~l~l~~~~d~~----~~rti~VltK~D~~~ 217 (461)
++.+..+++++-. ..++|=|=||+|...
T Consensus 276 ~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~ 308 (410)
T KOG0410|consen 276 RETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEE 308 (410)
T ss_pred HHHHHHHHHhcCCCcHHHHhHHHhhcccccccc
Confidence 3345556666532 345666777777653
No 276
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.43 E-value=5.5e-07 Score=93.63 Aligned_cols=70 Identities=17% Similarity=0.190 Sum_probs=42.4
Q ss_pred CCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCc-cc-----cHHHHHHHHHhCCCCC-c
Q 012559 133 PNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IA-----TSDAIKLAREVDPTGE-R 205 (461)
Q Consensus 133 p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d-~~-----~~~~l~l~~~~d~~~~-r 205 (461)
.....++|+||||..+. ...+..++..+|+.|| |+++..+ +. .....+.+..+...|. +
T Consensus 82 ~~~~~i~liDtPGh~df-------------~~~~~~g~~~aD~aIl-VVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~ 147 (447)
T PLN00043 82 TTKYYCTVIDAPGHRDF-------------IKNMITGTSQADCAVL-IIDSTTGGFEAGISKDGQTREHALLAFTLGVKQ 147 (447)
T ss_pred CCCEEEEEEECCCHHHH-------------HHHHHhhhhhccEEEE-EEEcccCceecccCCCchHHHHHHHHHHcCCCc
Confidence 34568999999996543 3445667788997665 4455543 21 0122222333333466 4
Q ss_pred eEEEeccCCcc
Q 012559 206 TFGVLTKLDLM 216 (461)
Q Consensus 206 ti~VltK~D~~ 216 (461)
.|+|+||+|+.
T Consensus 148 iIV~vNKmD~~ 158 (447)
T PLN00043 148 MICCCNKMDAT 158 (447)
T ss_pred EEEEEEcccCC
Confidence 68889999986
No 277
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.39 E-value=7e-07 Score=78.03 Aligned_cols=25 Identities=32% Similarity=0.606 Sum_probs=23.2
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDF 60 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~ 60 (461)
..++++|.+|+|||||+|+|+|..+
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~ 108 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKK 108 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3899999999999999999999875
No 278
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.36 E-value=3.2e-06 Score=83.12 Aligned_cols=82 Identities=22% Similarity=0.379 Sum_probs=56.6
Q ss_pred CCcEEEeCCCCCccccCCCC-ccHHHHHHHHHHHHhcC--------------CCeEEEEEecCCCccccHHHHHHHHHhC
Q 012559 136 VNLTLIDLPGLTKVAVEGQP-ESIVEDIENMVRSYVEK--------------PSCIILAISPANQDIATSDAIKLAREVD 200 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~-~~~~~~i~~~v~~yi~~--------------~~~iIL~V~~a~~d~~~~~~l~l~~~~d 200 (461)
.+|++|||||+.+.-..... +-+.+.+...-..|+.+ .+|++.++-|....+..-|.. ..+++.
T Consensus 82 ~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe-~Mk~ls 160 (373)
T COG5019 82 LNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIE-AMKRLS 160 (373)
T ss_pred EEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHH-HHHHHh
Confidence 58999999999876432111 22445667777777753 256555666666677776665 667776
Q ss_pred CCCCceEEEeccCCccCCC
Q 012559 201 PTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 201 ~~~~rti~VltK~D~~~~~ 219 (461)
. ....|-||.|.|.+...
T Consensus 161 ~-~vNlIPVI~KaD~lT~~ 178 (373)
T COG5019 161 K-RVNLIPVIAKADTLTDD 178 (373)
T ss_pred c-ccCeeeeeeccccCCHH
Confidence 5 48899999999998654
No 279
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.36 E-value=2.2e-06 Score=79.20 Aligned_cols=117 Identities=20% Similarity=0.215 Sum_probs=71.8
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
...|+|+|..++|||+|.-.+++..|.+. .-|+
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~------y~pt----------------------------------------- 35 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVED------YDPT----------------------------------------- 35 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccc------cCCC-----------------------------------------
Confidence 46899999999999999999998877322 1111
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHH
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 194 (461)
.. ..-.++ +.+. .....|.|+||+|.... ..|-..|+...+..+++. +.+..-+-+.+..
T Consensus 36 ie---d~y~k~--~~v~-~~~~~l~ilDt~g~~~~-------------~~~~~~~~~~~~gF~lVy-sitd~~SF~~~~~ 95 (196)
T KOG0395|consen 36 IE---DSYRKE--LTVD-GEVCMLEILDTAGQEEF-------------SAMRDLYIRNGDGFLLVY-SITDRSSFEEAKQ 95 (196)
T ss_pred cc---ccceEE--EEEC-CEEEEEEEEcCCCcccC-------------hHHHHHhhccCcEEEEEE-ECCCHHHHHHHHH
Confidence 00 000111 1122 23467789999994333 567788999999765443 3332222223322
Q ss_pred HH----HHhCCCCCceEEEeccCCccCC
Q 012559 195 LA----REVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 195 l~----~~~d~~~~rti~VltK~D~~~~ 218 (461)
+. +..+....|+++|.||+|+...
T Consensus 96 l~~~I~r~~~~~~~PivlVGNK~Dl~~~ 123 (196)
T KOG0395|consen 96 LREQILRVKGRDDVPIILVGNKCDLERE 123 (196)
T ss_pred HHHHHHHhhCcCCCCEEEEEEcccchhc
Confidence 22 2224445699999999999864
No 280
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.35 E-value=5.7e-07 Score=82.71 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=23.1
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDF 60 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~ 60 (461)
.++++||.+|+|||||+|+|.+...
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~ 152 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDN 152 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcc
Confidence 6899999999999999999998754
No 281
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=2.8e-06 Score=84.15 Aligned_cols=83 Identities=24% Similarity=0.422 Sum_probs=56.2
Q ss_pred CCcEEEeCCCCCccccCCC-CccHHHHHHHHHHHHhcC-------------CCeEEEEEecCCCccccHHHHHHHHHhCC
Q 012559 136 VNLTLIDLPGLTKVAVEGQ-PESIVEDIENMVRSYVEK-------------PSCIILAISPANQDIATSDAIKLAREVDP 201 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~-~~~~~~~i~~~v~~yi~~-------------~~~iIL~V~~a~~d~~~~~~l~l~~~~d~ 201 (461)
.+||+|||||+.+.-.... -.-+.+.+...-..|+.+ .+|++.++.|....+..-|.. +.+.+..
T Consensus 79 l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~-~Mk~l~~ 157 (366)
T KOG2655|consen 79 LNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIE-FMKKLSK 157 (366)
T ss_pred EeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHH-HHHHHhc
Confidence 5799999999987643211 112445566666777753 356566666766667776665 5566654
Q ss_pred CCCceEEEeccCCccCCCc
Q 012559 202 TGERTFGVLTKLDLMDKGT 220 (461)
Q Consensus 202 ~~~rti~VltK~D~~~~~~ 220 (461)
...+|-||.|.|.+.+.+
T Consensus 158 -~vNiIPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 158 -KVNLIPVIAKADTLTKDE 175 (366)
T ss_pred -cccccceeeccccCCHHH
Confidence 588999999999997653
No 282
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=2.4e-06 Score=77.60 Aligned_cols=120 Identities=14% Similarity=0.221 Sum_probs=78.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhh
Q 012559 33 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (461)
Q Consensus 33 ~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~ 112 (461)
--+=.||++|++++|||-||..++...| .+-++.++-+.+..
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF-----~~~SksTIGvef~t--------------------------------- 53 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEF-----SLESKSTIGVEFAT--------------------------------- 53 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhccccc-----CcccccceeEEEEe---------------------------------
Confidence 3566799999999999999999999888 44444443222110
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccc---c
Q 012559 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIA---T 189 (461)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~---~ 189 (461)
. .+.|.+ ......||||.|..+. +.++-.|.+.+...+ +|-|.+...+ .
T Consensus 54 -----------~--t~~vd~-k~vkaqIWDTAGQERy-------------rAitSaYYrgAvGAl-lVYDITr~~Tfenv 105 (222)
T KOG0087|consen 54 -----------R--TVNVDG-KTVKAQIWDTAGQERY-------------RAITSAYYRGAVGAL-LVYDITRRQTFENV 105 (222)
T ss_pred -----------e--ceeecC-cEEEEeeecccchhhh-------------ccccchhhcccceeE-EEEechhHHHHHHH
Confidence 0 011111 2245679999998775 677889999988644 4444433222 2
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 190 SDAIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 190 ~~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
..|++-++.......++++|-||+|+...
T Consensus 106 ~rWL~ELRdhad~nivimLvGNK~DL~~l 134 (222)
T KOG0087|consen 106 ERWLKELRDHADSNIVIMLVGNKSDLNHL 134 (222)
T ss_pred HHHHHHHHhcCCCCeEEEEeecchhhhhc
Confidence 34444445545557889999999999763
No 283
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.32 E-value=3.3e-06 Score=79.81 Aligned_cols=37 Identities=32% Similarity=0.355 Sum_probs=29.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCC-CCCccCCC--cccc
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGR-DFLPRGSG--IVTR 70 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~-~~lP~~~~--~~Tr 70 (461)
+.-.|+|+|.+++|||+|||.|+|. +.|+.+.+ .||+
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~ 45 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTK 45 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCcc
Confidence 5678999999999999999999998 23465554 3554
No 284
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.31 E-value=4.4e-07 Score=84.22 Aligned_cols=91 Identities=25% Similarity=0.341 Sum_probs=57.5
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
=-+|+++|-||+||||||..|++..- ....--.+ +...+
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~S-----eaA~yeFT------------------------------------TLtcI 100 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHS-----EAASYEFT------------------------------------TLTCI 100 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchh-----hhhceeee------------------------------------EEEee
Confidence 36899999999999999999998642 11110000 11122
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCc
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD 186 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d 186 (461)
+| +...+..++.++|+||++..+..|... -..+....+.+| +||+|.+|...
T Consensus 101 pG-------------vi~y~ga~IQllDLPGIieGAsqgkGR------GRQviavArtaD-lilMvLDatk~ 152 (364)
T KOG1486|consen 101 PG-------------VIHYNGANIQLLDLPGIIEGASQGKGR------GRQVIAVARTAD-LILMVLDATKS 152 (364)
T ss_pred cc-------------eEEecCceEEEecCcccccccccCCCC------CceEEEEeeccc-EEEEEecCCcc
Confidence 33 333445789999999999887554322 122334445566 78888888743
No 285
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=2.8e-06 Score=75.72 Aligned_cols=151 Identities=18% Similarity=0.262 Sum_probs=90.8
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
--+|+++|--+|||||+|..|--.++ +|-.||
T Consensus 17 e~~IlmlGLD~AGKTTILykLk~~E~-------vttvPT----------------------------------------- 48 (181)
T KOG0070|consen 17 EMRILMVGLDAAGKTTILYKLKLGEI-------VTTVPT----------------------------------------- 48 (181)
T ss_pred eEEEEEEeccCCCceeeeEeeccCCc-------ccCCCc-----------------------------------------
Confidence 46899999999999999998875543 333554
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHH-H
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA-I 193 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~-l 193 (461)
.| |.-..+ .. ....++++|.-|..+. +.+.+.|..+.+.+|++|.+... ....++ .
T Consensus 49 iG----fnVE~v----~y-kn~~f~vWDvGGq~k~-------------R~lW~~Y~~~t~~lIfVvDS~Dr-~Ri~eak~ 105 (181)
T KOG0070|consen 49 IG----FNVETV----EY-KNISFTVWDVGGQEKL-------------RPLWKHYFQNTQGLIFVVDSSDR-ERIEEAKE 105 (181)
T ss_pred cc----cceeEE----EE-cceEEEEEecCCCccc-------------ccchhhhccCCcEEEEEEeCCcH-HHHHHHHH
Confidence 12 222221 11 2478899999998664 67889999999976655554433 222222 2
Q ss_pred HHHHHh---CCCCCceEEEeccCCccCCCc--cHHHHHhCcccccCCCee--EEEeCChhhhcccccHHHH
Q 012559 194 KLAREV---DPTGERTFGVLTKLDLMDKGT--NALEVLEGRSYRLQHPWV--GIVNRSQADINKNVDMIAA 257 (461)
Q Consensus 194 ~l~~~~---d~~~~rti~VltK~D~~~~~~--~~~~~l~~~~~~l~~g~~--~v~~~s~~~~~~~~~~~~~ 257 (461)
++.+.+ +..+.++++..||.|+...-+ +..+.+.-..+.. ..|+ +....++.++.++++.+..
T Consensus 106 eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~-~~w~iq~~~a~~G~GL~egl~wl~~ 175 (181)
T KOG0070|consen 106 ELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRS-RNWHIQSTCAISGEGLYEGLDWLSN 175 (181)
T ss_pred HHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCC-CCcEEeeccccccccHHHHHHHHHH
Confidence 233333 334788999999999875432 2333333122222 4555 3344566665555555443
No 286
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.28 E-value=1.2e-06 Score=85.42 Aligned_cols=31 Identities=23% Similarity=0.382 Sum_probs=25.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRG 64 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~ 64 (461)
...+++|||.+|+|||||+|+|+|.....++
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~ 147 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVG 147 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccC
Confidence 3468999999999999999999998764443
No 287
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=98.25 E-value=1.6e-06 Score=74.01 Aligned_cols=119 Identities=19% Similarity=0.206 Sum_probs=73.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
.|-...++|++++|||||+-.+....| - ++=+.|
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtF-s-~sYitT-------------------------------------------- 40 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTF-S-GSYITT-------------------------------------------- 40 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhccc-c-cceEEE--------------------------------------------
Confidence 455567899999999999999887765 1 111111
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccc--c-H
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIA--T-S 190 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~--~-~ 190 (461)
.++.-++-.+.|.+ ....|.|+||.|-.. ++.+...|.+.++.+|++ -+.....+ + .
T Consensus 41 -----iGvDfkirTv~i~G-~~VkLqIwDtAGqEr-------------Frtitstyyrgthgv~vV-YDVTn~ESF~Nv~ 100 (198)
T KOG0079|consen 41 -----IGVDFKIRTVDING-DRVKLQIWDTAGQER-------------FRTITSTYYRGTHGVIVV-YDVTNGESFNNVK 100 (198)
T ss_pred -----eeeeEEEEEeecCC-cEEEEEEeecccHHH-------------HHHHHHHHccCCceEEEE-EECcchhhhHhHH
Confidence 01111222222332 336789999999544 388999999999975554 33332222 1 3
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 191 DAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
.+++-++.-.+ ..+-++|-||.|..+..
T Consensus 101 rWLeei~~ncd-sv~~vLVGNK~d~~~Rr 128 (198)
T KOG0079|consen 101 RWLEEIRNNCD-SVPKVLVGNKNDDPERR 128 (198)
T ss_pred HHHHHHHhcCc-cccceecccCCCCccce
Confidence 44444443333 57889999999987654
No 288
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.25 E-value=1.5e-06 Score=85.30 Aligned_cols=30 Identities=17% Similarity=0.360 Sum_probs=25.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCcc
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPR 63 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~ 63 (461)
.-.+++|||.+|+|||||+|+|+|.....+
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~ 149 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKT 149 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcccc
Confidence 346899999999999999999999876433
No 289
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.24 E-value=1.3e-05 Score=80.70 Aligned_cols=81 Identities=21% Similarity=0.234 Sum_probs=50.5
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCc
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 215 (461)
.+++||||||-... .......+..+... ..++. +++|++|+. ..++....++.+... ...=+|+||+|.
T Consensus 321 ~DvVLIDTaGRs~k-----d~~lm~EL~~~lk~--~~Pde-vlLVLsATt--k~~d~~~i~~~F~~~-~idglI~TKLDE 389 (436)
T PRK11889 321 VDYILIDTAGKNYR-----ASETVEEMIETMGQ--VEPDY-ICLTLSASM--KSKDMIEIITNFKDI-HIDGIVFTKFDE 389 (436)
T ss_pred CCEEEEeCccccCc-----CHHHHHHHHHHHhh--cCCCe-EEEEECCcc--ChHHHHHHHHHhcCC-CCCEEEEEcccC
Confidence 68999999997653 12222223333322 23554 455566652 345556677777763 456678999999
Q ss_pred cCCCccHHHHHh
Q 012559 216 MDKGTNALEVLE 227 (461)
Q Consensus 216 ~~~~~~~~~~l~ 227 (461)
......+..+..
T Consensus 390 T~k~G~iLni~~ 401 (436)
T PRK11889 390 TASSGELLKIPA 401 (436)
T ss_pred CCCccHHHHHHH
Confidence 988777777655
No 290
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.21 E-value=1.8e-06 Score=79.81 Aligned_cols=81 Identities=20% Similarity=0.214 Sum_probs=43.8
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCc
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 215 (461)
.+++||||||..... .+..+.+.++.. .+ .++ -+++|++++... +.+..+.........+=+|+||.|.
T Consensus 84 ~D~vlIDT~Gr~~~d-----~~~~~el~~~~~-~~-~~~-~~~LVlsa~~~~---~~~~~~~~~~~~~~~~~lIlTKlDe 152 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRD-----EELLEELKKLLE-AL-NPD-EVHLVLSATMGQ---EDLEQALAFYEAFGIDGLILTKLDE 152 (196)
T ss_dssp SSEEEEEE-SSSSTH-----HHHHHHHHHHHH-HH-SSS-EEEEEEEGGGGG---HHHHHHHHHHHHSSTCEEEEESTTS
T ss_pred CCEEEEecCCcchhh-----HHHHHHHHHHhh-hc-CCc-cceEEEecccCh---HHHHHHHHHhhcccCceEEEEeecC
Confidence 689999999987531 223333333332 22 344 356666766432 2222222221112345677999999
Q ss_pred cCCCccHHHHHh
Q 012559 216 MDKGTNALEVLE 227 (461)
Q Consensus 216 ~~~~~~~~~~l~ 227 (461)
......+..++.
T Consensus 153 t~~~G~~l~~~~ 164 (196)
T PF00448_consen 153 TARLGALLSLAY 164 (196)
T ss_dssp SSTTHHHHHHHH
T ss_pred CCCcccceeHHH
Confidence 877766666654
No 291
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.19 E-value=8.9e-06 Score=84.01 Aligned_cols=119 Identities=18% Similarity=0.249 Sum_probs=77.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
.--+||+||+.++|||||+-+|+...|.| .+..|.|-. .
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef~~---~VP~rl~~i--------------------------------------~ 46 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVD---AVPRRLPRI--------------------------------------L 46 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhccc---cccccCCcc--------------------------------------c
Confidence 45789999999999999999999998732 122222210 0
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCC----Ccccc
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPAN----QDIAT 189 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~----~d~~~ 189 (461)
++. =..|...+.++||++--.. + +..+.+-++++|. |++|-+.+ .|--.
T Consensus 47 IPa-------------dvtPe~vpt~ivD~ss~~~--------~-----~~~l~~EirkA~v-i~lvyavd~~~T~D~is 99 (625)
T KOG1707|consen 47 IPA-------------DVTPENVPTSIVDTSSDSD--------D-----RLCLRKEIRKADV-ICLVYAVDDESTVDRIS 99 (625)
T ss_pred cCC-------------ccCcCcCceEEEecccccc--------h-----hHHHHHHHhhcCE-EEEEEecCChHHhhhhh
Confidence 010 1234556689999983211 1 3445677888884 44443332 34445
Q ss_pred HHHHHHHHHhC--CCCCceEEEeccCCccCCCc
Q 012559 190 SDAIKLAREVD--PTGERTFGVLTKLDLMDKGT 220 (461)
Q Consensus 190 ~~~l~l~~~~d--~~~~rti~VltK~D~~~~~~ 220 (461)
.-|+-+.++.. ....|+|+|-||+|..+...
T Consensus 100 t~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~ 132 (625)
T KOG1707|consen 100 TKWLPLIRQLFGDYHETPVILVGNKSDNGDNEN 132 (625)
T ss_pred hhhhhhhhcccCCCccCCEEEEeeccCCccccc
Confidence 56777888775 34689999999999987554
No 292
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.17 E-value=1.7e-06 Score=86.24 Aligned_cols=32 Identities=31% Similarity=0.574 Sum_probs=27.1
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCcccccc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRP 72 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p 72 (461)
-++.|||-||+|||||||+|+|... ..+.++|
T Consensus 133 ~~v~vvG~PNVGKSslIN~L~~k~~-----~~~s~~P 164 (322)
T COG1161 133 IRVGVVGYPNVGKSTLINRLLGKKV-----AKTSNRP 164 (322)
T ss_pred eEEEEEcCCCCcHHHHHHHHhcccc-----eeeCCCC
Confidence 4599999999999999999999976 4555555
No 293
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.17 E-value=1.8e-05 Score=78.57 Aligned_cols=84 Identities=21% Similarity=0.281 Sum_probs=50.2
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHH---HHhc-CCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEe
Q 012559 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVR---SYVE-KPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVL 210 (461)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~---~yi~-~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~Vl 210 (461)
..+++||||||..... ....+++..+.+ ..+. .++ -.++|++|+. .++++.-++.....-..+-+|+
T Consensus 196 ~~D~ViIDTaGr~~~~-----~~l~~eL~~~~~v~~~~~~~~p~-~~~LVl~a~~---g~~~~~~a~~f~~~~~~~giIl 266 (318)
T PRK10416 196 GIDVLIIDTAGRLHNK-----TNLMEELKKIKRVIKKADPDAPH-EVLLVLDATT---GQNALSQAKAFHEAVGLTGIIL 266 (318)
T ss_pred CCCEEEEeCCCCCcCC-----HHHHHHHHHHHHHHhhhcCCCCc-eEEEEEECCC---ChHHHHHHHHHHhhCCCCEEEE
Confidence 3689999999987642 333333333322 2222 344 4566777763 3334434555543335677899
Q ss_pred ccCCccCCCccHHHHHh
Q 012559 211 TKLDLMDKGTNALEVLE 227 (461)
Q Consensus 211 tK~D~~~~~~~~~~~l~ 227 (461)
||+|....+..+..++.
T Consensus 267 TKlD~t~~~G~~l~~~~ 283 (318)
T PRK10416 267 TKLDGTAKGGVVFAIAD 283 (318)
T ss_pred ECCCCCCCccHHHHHHH
Confidence 99998877766666654
No 294
>PRK13768 GTPase; Provisional
Probab=98.15 E-value=1.7e-05 Score=76.42 Aligned_cols=75 Identities=23% Similarity=0.324 Sum_probs=42.4
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcC--CCeEEEEEecCCCccccHH-----HHHHHHHhCCCCCceEE
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEK--PSCIILAISPANQDIATSD-----AIKLAREVDPTGERTFG 208 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~--~~~iIL~V~~a~~d~~~~~-----~l~l~~~~d~~~~rti~ 208 (461)
.++.++|+||...... .......++ +++.. ++ ++++|+|+.......+ .+.+..+. ..+.+.+.
T Consensus 97 ~~~~~~d~~g~~~~~~------~~~~~~~~~-~~l~~~~~~-~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~ 167 (253)
T PRK13768 97 ADYVLVDTPGQMELFA------FRESGRKLV-ERLSGSSKS-VVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIP 167 (253)
T ss_pred CCEEEEeCCcHHHHHh------hhHHHHHHH-HHHHhcCCe-EEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEE
Confidence 4789999999876421 111112222 33332 45 6777777753222222 11122222 34789999
Q ss_pred EeccCCccCCC
Q 012559 209 VLTKLDLMDKG 219 (461)
Q Consensus 209 VltK~D~~~~~ 219 (461)
|+||+|+.+..
T Consensus 168 v~nK~D~~~~~ 178 (253)
T PRK13768 168 VLNKADLLSEE 178 (253)
T ss_pred EEEhHhhcCch
Confidence 99999998764
No 295
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=6.5e-06 Score=74.96 Aligned_cols=70 Identities=21% Similarity=0.348 Sum_probs=44.7
Q ss_pred CcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhc---CCCeEEEEEecCCCccccHHHHHHHH------HhCCCCCceE
Q 012559 137 NLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE---KPSCIILAISPANQDIATSDAIKLAR------EVDPTGERTF 207 (461)
Q Consensus 137 ~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~---~~~~iIL~V~~a~~d~~~~~~l~l~~------~~d~~~~rti 207 (461)
..+|||+||..+. +.-...|++ .+-.|+++|.++..+-...++-.++- +...++.+.+
T Consensus 83 ~~~LVD~PGH~rl-------------R~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vL 149 (238)
T KOG0090|consen 83 NVTLVDLPGHSRL-------------RRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVL 149 (238)
T ss_pred ceEEEeCCCcHHH-------------HHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEE
Confidence 4799999997764 444555665 45666766666654443344332221 1134578899
Q ss_pred EEeccCCccCCC
Q 012559 208 GVLTKLDLMDKG 219 (461)
Q Consensus 208 ~VltK~D~~~~~ 219 (461)
+..||-|+....
T Consensus 150 IaCNKqDl~tAk 161 (238)
T KOG0090|consen 150 IACNKQDLFTAK 161 (238)
T ss_pred EEecchhhhhcC
Confidence 999999997544
No 296
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.15 E-value=3.9e-06 Score=75.88 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=24.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFL 61 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~l 61 (461)
..+.++++|.+|+|||||+|+|++..+.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~ 141 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVA 141 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCce
Confidence 3468999999999999999999998763
No 297
>PRK14974 cell division protein FtsY; Provisional
Probab=98.14 E-value=6.7e-06 Score=81.98 Aligned_cols=81 Identities=28% Similarity=0.429 Sum_probs=52.0
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCc
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 215 (461)
.+++||||||.... +......++.+.+ ..+++. +++|.++.. .+++...++.+...-...-+|+||+|.
T Consensus 223 ~DvVLIDTaGr~~~-----~~~lm~eL~~i~~--~~~pd~-~iLVl~a~~---g~d~~~~a~~f~~~~~~~giIlTKlD~ 291 (336)
T PRK14974 223 IDVVLIDTAGRMHT-----DANLMDELKKIVR--VTKPDL-VIFVGDALA---GNDAVEQAREFNEAVGIDGVILTKVDA 291 (336)
T ss_pred CCEEEEECCCccCC-----cHHHHHHHHHHHH--hhCCce-EEEeecccc---chhHHHHHHHHHhcCCCCEEEEeeecC
Confidence 57999999998764 2334444444432 235674 456667653 356666666665444557889999999
Q ss_pred cCCCccHHHHHh
Q 012559 216 MDKGTNALEVLE 227 (461)
Q Consensus 216 ~~~~~~~~~~l~ 227 (461)
...+..+..+..
T Consensus 292 ~~~~G~~ls~~~ 303 (336)
T PRK14974 292 DAKGGAALSIAY 303 (336)
T ss_pred CCCccHHHHHHH
Confidence 887766666544
No 298
>PRK12289 GTPase RsgA; Reviewed
Probab=98.13 E-value=5.2e-06 Score=83.45 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=22.7
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCc
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLP 62 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP 62 (461)
.++|+|.+|+|||||||+|+|...+.
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~ 199 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELR 199 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccc
Confidence 58999999999999999999875433
No 299
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.13 E-value=7.4e-06 Score=75.77 Aligned_cols=133 Identities=19% Similarity=0.276 Sum_probs=75.1
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCC----ccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHh
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSG----IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDET 111 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~----~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~ 111 (461)
=.|.|||..+.||||++|.|....+.-.+.. ..++..+++....
T Consensus 47 FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~t-------------------------------- 94 (336)
T KOG1547|consen 47 FNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSIT-------------------------------- 94 (336)
T ss_pred eEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeee--------------------------------
Confidence 3599999999999999999997765322111 1222222222100
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCC-CccHHHHHHHHHHHHhcC--------------CCeE
Q 012559 112 DRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQ-PESIVEDIENMVRSYVEK--------------PSCI 176 (461)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~-~~~~~~~i~~~v~~yi~~--------------~~~i 176 (461)
..+.. ..-...|++|||||+.+.-..+. =+-+...+.+.-.+|++. .+|+
T Consensus 95 -------hvieE--------~gVklkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcc 159 (336)
T KOG1547|consen 95 -------HVIEE--------KGVKLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCC 159 (336)
T ss_pred -------eeeee--------cceEEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEE
Confidence 00111 11124789999999976432110 112444555555566543 3465
Q ss_pred EEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCccC
Q 012559 177 ILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMD 217 (461)
Q Consensus 177 IL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~ 217 (461)
+.++-+....+..-|.. +++.+.. -..+|-||-|.|.+.
T Consensus 160 lyFi~ptGhsLrplDie-flkrLt~-vvNvvPVIakaDtlT 198 (336)
T KOG1547|consen 160 LYFIPPTGHSLRPLDIE-FLKRLTE-VVNVVPVIAKADTLT 198 (336)
T ss_pred EEEeCCCCCccCcccHH-HHHHHhh-hheeeeeEeeccccc
Confidence 55555555455444443 4555544 267889999999874
No 300
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.12 E-value=3.5e-05 Score=83.89 Aligned_cols=151 Identities=22% Similarity=0.251 Sum_probs=82.1
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCC--------CcchhhhcCCCCcccChHHHHHHHH
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGG--------TDYAEFLHAPRKKFTDFAAVRKEIS 108 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~--------~~~~~~~~~~~~~~~d~~~v~~~i~ 108 (461)
.|++||.+|+||||++..|.+.-. +.... -.+-+...+.. ..|++....+-....|..++.+.+.
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~-~~~G~------kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~ 259 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCV-AREGA------DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALA 259 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHH-HHcCC------CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH
Confidence 689999999999999999998621 21110 01111112211 2233333333323334444443332
Q ss_pred HHhhhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccc
Q 012559 109 DETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIA 188 (461)
Q Consensus 109 ~~~~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~ 188 (461)
... ..+++||||||..... ..+.+.+..+.. ...++ -+++|++++. .
T Consensus 260 ----~~~-------------------~~D~VLIDTAGRs~~d-----~~l~eel~~l~~--~~~p~-e~~LVLsAt~--~ 306 (767)
T PRK14723 260 ----ALG-------------------DKHLVLIDTVGMSQRD-----RNVSEQIAMLCG--VGRPV-RRLLLLNAAS--H 306 (767)
T ss_pred ----Hhc-------------------CCCEEEEeCCCCCccC-----HHHHHHHHHHhc--cCCCC-eEEEEECCCC--c
Confidence 111 2578999999976531 223333332221 22344 3566667663 2
Q ss_pred cHHHHHHHHHhCCCC--CceEEEeccCCccCCCccHHHHHh
Q 012559 189 TSDAIKLAREVDPTG--ERTFGVLTKLDLMDKGTNALEVLE 227 (461)
Q Consensus 189 ~~~~l~l~~~~d~~~--~rti~VltK~D~~~~~~~~~~~l~ 227 (461)
.++..++++.+.... ..+=+|+||.|.......+.++..
T Consensus 307 ~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~~~G~iL~i~~ 347 (767)
T PRK14723 307 GDTLNEVVHAYRHGAGEDVDGCIITKLDEATHLGPALDTVI 347 (767)
T ss_pred HHHHHHHHHHHhhcccCCCCEEEEeccCCCCCccHHHHHHH
Confidence 233344566664321 356688999999988777777765
No 301
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.11 E-value=4.5e-05 Score=65.72 Aligned_cols=128 Identities=21% Similarity=0.275 Sum_probs=79.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
+...|+|||.-|+|||++|+.|+-....|-.. -+|+ .+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e----~~pT-------------------------------------iE- 45 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTE----LHPT-------------------------------------IE- 45 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCc----cccc-------------------------------------hh-
Confidence 45789999999999999999998554322111 1111 00
Q ss_pred hcCCCCcccCccEEEEEecCC--CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPN--VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD 191 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~--~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~ 191 (461)
++-...+.++. ...|.|.||.|+.... .++-+.|++-+|+.+|+-.+++... -+.
T Consensus 46 ----------DiY~~svet~rgarE~l~lyDTaGlq~~~------------~eLprhy~q~aDafVLVYs~~d~eS-f~r 102 (198)
T KOG3883|consen 46 ----------DIYVASVETDRGAREQLRLYDTAGLQGGQ------------QELPRHYFQFADAFVLVYSPMDPES-FQR 102 (198)
T ss_pred ----------hheeEeeecCCChhheEEEeecccccCch------------hhhhHhHhccCceEEEEecCCCHHH-HHH
Confidence 00011122222 2578999999997642 5678899999998877776665322 222
Q ss_pred HHHHHHHhCC----CCCceEEEeccCCccCCCccHHHHH
Q 012559 192 AIKLAREVDP----TGERTFGVLTKLDLMDKGTNALEVL 226 (461)
Q Consensus 192 ~l~l~~~~d~----~~~rti~VltK~D~~~~~~~~~~~l 226 (461)
..-+-+++|. ...++++..||.|+.++.+-..++.
T Consensus 103 v~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A 141 (198)
T KOG3883|consen 103 VELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVA 141 (198)
T ss_pred HHHHHHHHhhccccccccEEEEechhhcccchhcCHHHH
Confidence 2224455553 3467888899999987665333443
No 302
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.11 E-value=3.8e-06 Score=83.76 Aligned_cols=81 Identities=20% Similarity=0.289 Sum_probs=47.3
Q ss_pred ccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCc-------ccc--HH
Q 012559 121 ISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-------IAT--SD 191 (461)
Q Consensus 121 ~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d-------~~~--~~ 191 (461)
++-+.-.....++. +.++++|+||..+ .+.+|+. -++++|+.||+| +|+.+ ... .+
T Consensus 71 vTi~~~~~~fet~k-~~~tIiDaPGHrd------------FvknmIt-GasqAD~aVLVV-~a~~~efE~g~~~~gQtrE 135 (428)
T COG5256 71 VTIDVAHSKFETDK-YNFTIIDAPGHRD------------FVKNMIT-GASQADVAVLVV-DARDGEFEAGFGVGGQTRE 135 (428)
T ss_pred eEEEEEEEEeecCC-ceEEEeeCCchHH------------HHHHhhc-chhhccEEEEEE-ECCCCccccccccCCchhH
Confidence 33333333444443 6899999999322 2344443 335668655554 55444 222 23
Q ss_pred HHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
...|++.+. -...|+++||+|.++-
T Consensus 136 H~~La~tlG--i~~lIVavNKMD~v~w 160 (428)
T COG5256 136 HAFLARTLG--IKQLIVAVNKMDLVSW 160 (428)
T ss_pred HHHHHHhcC--CceEEEEEEccccccc
Confidence 344677664 4678889999999963
No 303
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.11 E-value=4.2e-05 Score=78.36 Aligned_cols=81 Identities=16% Similarity=0.126 Sum_probs=48.1
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCc
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 215 (461)
.++.+|||+|..... ....+.+..+. ....+. -.++|++|+. ..++..++++.+... ..+=+|+||.|.
T Consensus 270 ~d~VLIDTaGrsqrd-----~~~~~~l~~l~--~~~~~~-~~~LVl~at~--~~~~~~~~~~~f~~~-~~~~~I~TKlDE 338 (420)
T PRK14721 270 KHMVLIDTVGMSQRD-----QMLAEQIAMLS--QCGTQV-KHLLLLNATS--SGDTLDEVISAYQGH-GIHGCIITKVDE 338 (420)
T ss_pred CCEEEecCCCCCcch-----HHHHHHHHHHh--ccCCCc-eEEEEEcCCC--CHHHHHHHHHHhcCC-CCCEEEEEeeeC
Confidence 578999999987631 22233333221 112233 2455666663 234455566666654 345678999999
Q ss_pred cCCCccHHHHHh
Q 012559 216 MDKGTNALEVLE 227 (461)
Q Consensus 216 ~~~~~~~~~~l~ 227 (461)
......+.+++.
T Consensus 339 t~~~G~~l~~~~ 350 (420)
T PRK14721 339 AASLGIALDAVI 350 (420)
T ss_pred CCCccHHHHHHH
Confidence 987767777655
No 304
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=98.10 E-value=8.7e-06 Score=83.45 Aligned_cols=134 Identities=19% Similarity=0.237 Sum_probs=80.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
++..++||-+-..|||||...|+..- | |+-+. ...+++.|--+++ ++
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~t------g--~i~~~------------------~~q~q~LDkl~vE------RE- 105 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELT------G--TIDNN------------------IGQEQVLDKLQVE------RE- 105 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHh------C--CCCCC------------------Cchhhhhhhhhhh------hh-
Confidence 56789999999999999999998642 1 11110 0112222222222 11
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
.| -++....-.+........-|.+|||||..++. .-|.+.+...+. +|+|+||+.+...|...
T Consensus 106 -RG--ITIkaQtasify~~~~~ylLNLIDTPGHvDFs-------------~EVsRslaac~G-~lLvVDA~qGvqAQT~a 168 (650)
T KOG0462|consen 106 -RG--ITIKAQTASIFYKDGQSYLLNLIDTPGHVDFS-------------GEVSRSLAACDG-ALLVVDASQGVQAQTVA 168 (650)
T ss_pred -cC--cEEEeeeeEEEEEcCCceEEEeecCCCccccc-------------ceehehhhhcCc-eEEEEEcCcCchHHHHH
Confidence 12 22222233333333334678999999998874 224455556675 45556777777777765
Q ss_pred HHHHHhCCCCCceEEEeccCCccCC
Q 012559 194 KLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
.+...+. .+-..|.|+||+|+-..
T Consensus 169 nf~lAfe-~~L~iIpVlNKIDlp~a 192 (650)
T KOG0462|consen 169 NFYLAFE-AGLAIIPVLNKIDLPSA 192 (650)
T ss_pred HHHHHHH-cCCeEEEeeeccCCCCC
Confidence 5444443 37899999999999743
No 305
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.09 E-value=1.6e-05 Score=79.78 Aligned_cols=38 Identities=21% Similarity=0.135 Sum_probs=29.6
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCC-CccCCCccccccE
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDF-LPRGSGIVTRRPL 73 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~-lP~~~~~~Tr~p~ 73 (461)
..+.+||-||+|||||+|+|++... -+.....||..|.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~ 41 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPN 41 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCc
Confidence 4689999999999999999999874 2233355777765
No 306
>PRK12288 GTPase RsgA; Reviewed
Probab=98.09 E-value=1.1e-05 Score=81.08 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFL 61 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~l 61 (461)
.++++|.+|+|||||||+|+|...+
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~ 231 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEI 231 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccce
Confidence 5899999999999999999998643
No 307
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.08 E-value=2.3e-05 Score=74.02 Aligned_cols=152 Identities=19% Similarity=0.243 Sum_probs=82.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCC------------CCcchhhhc----C-CCCc
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEG------------GTDYAEFLH----A-PRKK 96 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~------------~~~~~~~~~----~-~~~~ 96 (461)
..+.|+|||--||||||++..|.+.-. .. -| .|-+|.|-..-. ...|.+... . .|..
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~-~~----~~-ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI 91 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLH-AK----KT-PPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGI 91 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHh-hc----cC-CCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcch
Confidence 567899999999999999999987522 11 11 155555422110 022322211 1 1222
Q ss_pred cc-------ChHHHHHHHHHHhhhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHH
Q 012559 97 FT-------DFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSY 169 (461)
Q Consensus 97 ~~-------d~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~y 169 (461)
.+ .|.++...|++.. ...+..||||||.+..-+=..+-.+ ++..+
T Consensus 92 ~TsLNLF~tk~dqv~~~iek~~----------------------~~~~~~liDTPGQIE~FtWSAsGsI------Ite~l 143 (366)
T KOG1532|consen 92 VTSLNLFATKFDQVIELIEKRA----------------------EEFDYVLIDTPGQIEAFTWSASGSI------ITETL 143 (366)
T ss_pred hhhHHHHHHHHHHHHHHHHHhh----------------------cccCEEEEcCCCceEEEEecCCccc------hHhhH
Confidence 22 3333333333221 1256789999999865322112222 22233
Q ss_pred hcCCCeEEEEEecCCCcccc----HHHHHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 170 VEKPSCIILAISPANQDIAT----SDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 170 i~~~~~iIL~V~~a~~d~~~----~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
...-.+|+..|++....-.. +..+.-+--+-....|+|+|+||.|..+.+
T Consensus 144 ass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d~~ 197 (366)
T KOG1532|consen 144 ASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSDSE 197 (366)
T ss_pred hhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccccccH
Confidence 33335677777775432222 223333344456679999999999998765
No 308
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=8e-06 Score=70.15 Aligned_cols=121 Identities=19% Similarity=0.239 Sum_probs=80.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
-|-.++|+|+.++|||.||..++..+| .-++..
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kf-kDdssH---------------------------------------------- 40 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKF-KDDSSH---------------------------------------------- 40 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhh-cccccc----------------------------------------------
Confidence 467899999999999999999998876 111000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--HH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT--SD 191 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~--~~ 191 (461)
..+..|-..+|.+ +.....|.+|||.|..+. +..+++|.+.+...+|+..-.+.|.-+ ..
T Consensus 41 --TiGveFgSrIinV---GgK~vKLQIWDTAGQErF-------------RSVtRsYYRGAAGAlLVYD~TsrdsfnaLtn 102 (214)
T KOG0086|consen 41 --TIGVEFGSRIVNV---GGKTVKLQIWDTAGQERF-------------RSVTRSYYRGAAGALLVYDITSRDSFNALTN 102 (214)
T ss_pred --eeeeeecceeeee---cCcEEEEEEeecccHHHH-------------HHHHHHHhccccceEEEEeccchhhHHHHHH
Confidence 0011222333322 223467899999996654 889999999887655554444433332 34
Q ss_pred HHHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 192 AIKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
++.-++.+.+...-+|++-||-|+-...
T Consensus 103 WL~DaR~lAs~nIvviL~GnKkDL~~~R 130 (214)
T KOG0086|consen 103 WLTDARTLASPNIVVILCGNKKDLDPER 130 (214)
T ss_pred HHHHHHhhCCCcEEEEEeCChhhcChhh
Confidence 5666788888777788889999986443
No 309
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.08 E-value=9.9e-05 Score=71.47 Aligned_cols=81 Identities=22% Similarity=0.235 Sum_probs=50.6
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCc
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 215 (461)
.++.||||||-.... ....+.+..+.. ..+++ -+++|++|+. ..+++...++.+... ...=+|+||.|.
T Consensus 155 ~D~ViIDt~Gr~~~~-----~~~l~el~~~~~--~~~~~-~~~LVl~a~~--~~~d~~~~~~~f~~~-~~~~~I~TKlDe 223 (270)
T PRK06731 155 VDYILIDTAGKNYRA-----SETVEEMIETMG--QVEPD-YICLTLSASM--KSKDMIEIITNFKDI-HIDGIVFTKFDE 223 (270)
T ss_pred CCEEEEECCCCCcCC-----HHHHHHHHHHHh--hhCCC-eEEEEEcCcc--CHHHHHHHHHHhCCC-CCCEEEEEeecC
Confidence 689999999976531 222222222222 22455 3566666652 335666778888764 456678999999
Q ss_pred cCCCccHHHHHh
Q 012559 216 MDKGTNALEVLE 227 (461)
Q Consensus 216 ~~~~~~~~~~l~ 227 (461)
......+..+..
T Consensus 224 t~~~G~~l~~~~ 235 (270)
T PRK06731 224 TASSGELLKIPA 235 (270)
T ss_pred CCCccHHHHHHH
Confidence 987766666654
No 310
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=1.4e-05 Score=79.29 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=31.6
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccE
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPL 73 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~ 73 (461)
.++.+||-||+|||||+|||+....-+-....||--|.
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN 40 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPN 40 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCC
Confidence 67999999999999999999988754455557887775
No 311
>PRK13796 GTPase YqeH; Provisional
Probab=98.07 E-value=6.4e-06 Score=83.55 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.6
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~ 59 (461)
..++|||.+|+|||||+|+|++..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~ 184 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEI 184 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhc
Confidence 479999999999999999999753
No 312
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.07 E-value=1.3e-05 Score=76.84 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=22.9
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDF 60 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~ 60 (461)
..++++|.+|+|||||+|+|+|...
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~ 145 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVK 145 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhh
Confidence 5899999999999999999999754
No 313
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.06 E-value=3.2e-05 Score=78.06 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCC
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
--.++++|.+|+||||++..|.+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999875
No 314
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.04 E-value=2.9e-05 Score=69.23 Aligned_cols=23 Identities=22% Similarity=0.484 Sum_probs=21.5
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
|.++++|..+|||||+++.+++.
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 78999999999999999999976
No 315
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.03 E-value=6.1e-05 Score=75.60 Aligned_cols=153 Identities=16% Similarity=0.201 Sum_probs=79.9
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCC-----CcchhhhcCCCC---cccChHHHHHH
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGG-----TDYAEFLHAPRK---KFTDFAAVRKE 106 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~-----~~~~~~~~~~~~---~~~d~~~v~~~ 106 (461)
-..|+++|.+|+||||++..|... +...+. . +.+...+.. ..|..+....+- ...+..++.+.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~-l~~~g~-----~---V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~a 276 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQ-LLKQNR-----T---VGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEA 276 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHHcCC-----e---EEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHH
Confidence 456889999999999999999854 222221 1 111222221 122222221111 12344444433
Q ss_pred HHHHhhhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCc
Q 012559 107 ISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD 186 (461)
Q Consensus 107 i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d 186 (461)
+..... . ...+++||||||..... ......+..+. .. ..++ .+++|.+++.
T Consensus 277 l~~l~~-~-------------------~~~D~VLIDTAGr~~~d-----~~~l~EL~~l~-~~-~~p~-~~~LVLsag~- 327 (407)
T PRK12726 277 VQYMTY-V-------------------NCVDHILIDTVGRNYLA-----EESVSEISAYT-DV-VHPD-LTCFTFSSGM- 327 (407)
T ss_pred HHHHHh-c-------------------CCCCEEEEECCCCCccC-----HHHHHHHHHHh-hc-cCCc-eEEEECCCcc-
Confidence 322110 0 12689999999986531 22222222221 11 2455 3455666642
Q ss_pred cccHHHHHHHHHhCCCCCceEEEeccCCccCCCccHHHHHh
Q 012559 187 IATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLE 227 (461)
Q Consensus 187 ~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~ 227 (461)
..++...+++.+... ...-+|+||.|.......+..+..
T Consensus 328 -~~~d~~~i~~~f~~l-~i~glI~TKLDET~~~G~~Lsv~~ 366 (407)
T PRK12726 328 -KSADVMTILPKLAEI-PIDGFIITKMDETTRIGDLYTVMQ 366 (407)
T ss_pred -cHHHHHHHHHhcCcC-CCCEEEEEcccCCCCccHHHHHHH
Confidence 334555566666543 355678999999877766766654
No 316
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.03 E-value=4.9e-06 Score=73.90 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=22.9
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDF 60 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~ 60 (461)
..++++|..++|||||+|+|++...
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~ 60 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAK 60 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcc
Confidence 7899999999999999999999854
No 317
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=2.6e-05 Score=78.14 Aligned_cols=137 Identities=16% Similarity=0.209 Sum_probs=83.1
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
-.+.+||-+|.+|||||-|.|+=. |-.-+-+..++-+++. ...-.||.+++++
T Consensus 12 RRTFAIISHPDAGKTTlTEkLLlf-------GgaIq~AG~Vk~rk~~------------~~a~SDWM~iEkq-------- 64 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLLLF-------GGAIQEAGTVKGRKSG------------KHAKSDWMEIEKQ-------- 64 (528)
T ss_pred hcceeEEecCCCCcccHHHHHHHh-------cchhhhcceeeeccCC------------cccccHHHHHHHh--------
Confidence 467999999999999999999832 2223333333322110 1112355555432
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHH
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 194 (461)
.++|-..-.++.. .+..-+.|.||||.-+.+ + -+.+.+-..|+.+ +|+||-.+++.+. ++
T Consensus 65 ----RGISVtsSVMqF~-Y~~~~iNLLDTPGHeDFS-----E--------DTYRtLtAvDsAv-MVIDaAKGiE~qT-~K 124 (528)
T COG4108 65 ----RGISVTSSVMQFD-YADCLVNLLDTPGHEDFS-----E--------DTYRTLTAVDSAV-MVIDAAKGIEPQT-LK 124 (528)
T ss_pred ----cCceEEeeEEEec-cCCeEEeccCCCCccccc-----h--------hHHHHHHhhheee-EEEecccCccHHH-HH
Confidence 2233333333332 334678899999988763 2 2444555667644 5555555666654 45
Q ss_pred HHHHhCCCCCceEEEeccCCccCC
Q 012559 195 LAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 195 l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
|.+-..-.+.|++-.+||+|.-..
T Consensus 125 LfeVcrlR~iPI~TFiNKlDR~~r 148 (528)
T COG4108 125 LFEVCRLRDIPIFTFINKLDREGR 148 (528)
T ss_pred HHHHHhhcCCceEEEeeccccccC
Confidence 766666778999999999998644
No 318
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.01 E-value=4.1e-05 Score=67.49 Aligned_cols=22 Identities=18% Similarity=0.537 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.|.++|..++||||++..+...
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~ 22 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITA 22 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHH
Confidence 3789999999999999999865
No 319
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.00 E-value=0.00011 Score=75.92 Aligned_cols=81 Identities=22% Similarity=0.301 Sum_probs=50.5
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCc
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 215 (461)
.+++||||||.... ...+.+++..+. .+..++. +++|+++... +++...++.+...-..+-+|+||+|.
T Consensus 176 ~DvVIIDTAGr~~~-----d~~lm~El~~l~--~~~~pde-vlLVvda~~g---q~av~~a~~F~~~l~i~gvIlTKlD~ 244 (437)
T PRK00771 176 ADVIIVDTAGRHAL-----EEDLIEEMKEIK--EAVKPDE-VLLVIDATIG---QQAKNQAKAFHEAVGIGGIIITKLDG 244 (437)
T ss_pred CCEEEEECCCcccc-----hHHHHHHHHHHH--HHhcccc-eeEEEecccc---HHHHHHHHHHHhcCCCCEEEEecccC
Confidence 37899999997764 233333333332 2335664 4556666543 56666777766543456679999999
Q ss_pred cCCCccHHHHHh
Q 012559 216 MDKGTNALEVLE 227 (461)
Q Consensus 216 ~~~~~~~~~~l~ 227 (461)
...+..+..+..
T Consensus 245 ~a~~G~~ls~~~ 256 (437)
T PRK00771 245 TAKGGGALSAVA 256 (437)
T ss_pred CCcccHHHHHHH
Confidence 877766666544
No 320
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=2.2e-06 Score=74.04 Aligned_cols=106 Identities=11% Similarity=0.175 Sum_probs=59.7
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCC--ccccHHHHHHHHHhC-CCCCceEEEecc
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ--DIATSDAIKLAREVD-PTGERTFGVLTK 212 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~--d~~~~~~l~l~~~~d-~~~~rti~VltK 212 (461)
..|.+|||.|..+. +.++..|.+++=..+|...-.+. -+....++.-++.-. -...-++++-||
T Consensus 67 ihLQlWDTAGQERF-------------RSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK 133 (219)
T KOG0081|consen 67 IHLQLWDTAGQERF-------------RSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNK 133 (219)
T ss_pred EEEeeeccccHHHH-------------HHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCc
Confidence 46899999996654 88888999988765554432221 111122221111111 123457788999
Q ss_pred CCccCCCccHHHHHhCcccccCCCeeEEEeCChhhhcccccH
Q 012559 213 LDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDM 254 (461)
Q Consensus 213 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~ 254 (461)
+|+.+...-..+-......+.+++|+....-.+.++++.++.
T Consensus 134 ~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv~kave~ 175 (219)
T KOG0081|consen 134 ADLEDQRVVSEDQAAALADKYGLPYFETSACTGTNVEKAVEL 175 (219)
T ss_pred cchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCHHHHHHH
Confidence 999865432222222123466788888776665555443333
No 321
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.00 E-value=1.2e-05 Score=80.85 Aligned_cols=134 Identities=16% Similarity=0.283 Sum_probs=78.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhh
Q 012559 33 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (461)
Q Consensus 33 ~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~ 112 (461)
.++..|++|-+-..|||||+.+|+...= +-... . .-..++.|..+++++
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSG------tf~~~------------e-------~v~ERvMDSnDlEkE------ 51 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSG------TFRER------------E-------EVAERVMDSNDLEKE------ 51 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhcc------ccccc------------c-------chhhhhcCccchhhh------
Confidence 3678899999999999999999997641 10000 0 001223333333322
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHH
Q 012559 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (461)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~ 192 (461)
.|. ++-.+.-. + .++...+.+|||||.-++. .-|.+-++-.|+++|+| +|..+...|.-
T Consensus 52 --RGI--TILaKnTa--v-~~~~~~INIvDTPGHADFG-------------GEVERvl~MVDgvlLlV-DA~EGpMPQTr 110 (603)
T COG1217 52 --RGI--TILAKNTA--V-NYNGTRINIVDTPGHADFG-------------GEVERVLSMVDGVLLLV-DASEGPMPQTR 110 (603)
T ss_pred --cCc--EEEeccce--e-ecCCeEEEEecCCCcCCcc-------------chhhhhhhhcceEEEEE-EcccCCCCchh
Confidence 120 00000000 1 2344789999999987763 22445555567755555 55555555554
Q ss_pred HHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 193 IKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
+ ..++.-..|-+-|+|+||+|.-+..
T Consensus 111 F-VlkKAl~~gL~PIVVvNKiDrp~Ar 136 (603)
T COG1217 111 F-VLKKALALGLKPIVVINKIDRPDAR 136 (603)
T ss_pred h-hHHHHHHcCCCcEEEEeCCCCCCCC
Confidence 4 4555556688999999999987544
No 322
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.99 E-value=1.5e-05 Score=80.83 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=22.1
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~ 59 (461)
..+++||.+|+|||||+|+|++..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~ 178 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQN 178 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhc
Confidence 489999999999999999999864
No 323
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.97 E-value=0.0001 Score=76.09 Aligned_cols=82 Identities=17% Similarity=0.224 Sum_probs=48.2
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCc
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 215 (461)
.++.||||||..... ......+..++.. ...+. -+++|++++. ...+..++++.+...+. .=+|+||+|.
T Consensus 300 ~DlVlIDt~G~~~~d-----~~~~~~L~~ll~~-~~~~~-~~~LVl~a~~--~~~~l~~~~~~f~~~~~-~~vI~TKlDe 369 (424)
T PRK05703 300 CDVILIDTAGRSQRD-----KRLIEELKALIEF-SGEPI-DVYLVLSATT--KYEDLKDIYKHFSRLPL-DGLIFTKLDE 369 (424)
T ss_pred CCEEEEeCCCCCCCC-----HHHHHHHHHHHhc-cCCCC-eEEEEEECCC--CHHHHHHHHHHhCCCCC-CEEEEecccc
Confidence 689999999986531 2222333444431 22333 3455566653 23444556667765443 4578999999
Q ss_pred cCCCccHHHHHh
Q 012559 216 MDKGTNALEVLE 227 (461)
Q Consensus 216 ~~~~~~~~~~l~ 227 (461)
......+.+++.
T Consensus 370 t~~~G~i~~~~~ 381 (424)
T PRK05703 370 TSSLGSILSLLI 381 (424)
T ss_pred cccccHHHHHHH
Confidence 876656666654
No 324
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.97 E-value=3.1e-05 Score=87.28 Aligned_cols=68 Identities=13% Similarity=0.152 Sum_probs=45.4
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCC
Q 012559 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (461)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 214 (461)
.|.++||||||.... ..+...+...+|+ +++|++++.++..+.. ..+..+...+.|.|+|+||+|
T Consensus 525 ~p~i~fiDTPGhe~F-------------~~lr~~g~~~aDi-vlLVVDa~~Gi~~qT~-e~I~~lk~~~iPiIVViNKiD 589 (1049)
T PRK14845 525 IPGLLFIDTPGHEAF-------------TSLRKRGGSLADL-AVLVVDINEGFKPQTI-EAINILRQYKTPFVVAANKID 589 (1049)
T ss_pred cCcEEEEECCCcHHH-------------HHHHHhhcccCCE-EEEEEECcccCCHhHH-HHHHHHHHcCCCEEEEEECCC
Confidence 467999999995432 3445566777885 5566677665544432 233344445789999999999
Q ss_pred ccC
Q 012559 215 LMD 217 (461)
Q Consensus 215 ~~~ 217 (461)
+..
T Consensus 590 L~~ 592 (1049)
T PRK14845 590 LIP 592 (1049)
T ss_pred Ccc
Confidence 974
No 325
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.97 E-value=7.2e-05 Score=76.18 Aligned_cols=83 Identities=19% Similarity=0.199 Sum_probs=47.8
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcC-CCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCC
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEK-PSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~-~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 214 (461)
.++.||||||..... ....+.+..+.. .+.. ...-.++|++|+.+ ..+....++.+... ..+=+|+||.|
T Consensus 300 ~D~VLIDTaGr~~rd-----~~~l~eL~~~~~-~~~~~~~~e~~LVLsAt~~--~~~~~~~~~~f~~~-~~~glIlTKLD 370 (432)
T PRK12724 300 SELILIDTAGYSHRN-----LEQLERMQSFYS-CFGEKDSVENLLVLSSTSS--YHHTLTVLKAYESL-NYRRILLTKLD 370 (432)
T ss_pred CCEEEEeCCCCCccC-----HHHHHHHHHHHH-hhcCCCCCeEEEEEeCCCC--HHHHHHHHHHhcCC-CCCEEEEEccc
Confidence 688999999986431 222222333322 2211 12234556666643 33445566666443 45668999999
Q ss_pred ccCCCccHHHHHh
Q 012559 215 LMDKGTNALEVLE 227 (461)
Q Consensus 215 ~~~~~~~~~~~l~ 227 (461)
....+..+..+..
T Consensus 371 Et~~~G~il~i~~ 383 (432)
T PRK12724 371 EADFLGSFLELAD 383 (432)
T ss_pred CCCCccHHHHHHH
Confidence 9887766666654
No 326
>PTZ00099 rab6; Provisional
Probab=97.97 E-value=2e-05 Score=71.55 Aligned_cols=116 Identities=16% Similarity=0.121 Sum_probs=66.8
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccH---HHHHHHHHhCCCCCceEEEec
Q 012559 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DAIKLAREVDPTGERTFGVLT 211 (461)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~---~~l~l~~~~d~~~~rti~Vlt 211 (461)
...+.|+||||..+. ..+...|++++|++| +|.+.+...+-. .++..+........+.++|.|
T Consensus 28 ~v~l~iwDt~G~e~~-------------~~~~~~~~~~ad~~i-lv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgN 93 (176)
T PTZ00099 28 PVRLQLWDTAGQERF-------------RSLIPSYIRDSAAAI-VVYDITNRQSFENTTKWIQDILNERGKDVIIALVGN 93 (176)
T ss_pred EEEEEEEECCChHHh-------------hhccHHHhCCCcEEE-EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEE
Confidence 467899999997654 456778999999655 454554321212 222222222333577899999
Q ss_pred cCCccCCCc-cHHHHHhCcccccCCCeeEEEeCChhhhcccccHHHHHHHHHhhh
Q 012559 212 KLDLMDKGT-NALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARRKEREYF 265 (461)
Q Consensus 212 K~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~E~~ff 265 (461)
|+|+..... ...+... .....+..|+.+......++.+.++.+...+.+.+.+
T Consensus 94 K~DL~~~~~v~~~e~~~-~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~ 147 (176)
T PTZ00099 94 KTDLGDLRKVTYEEGMQ-KAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS 147 (176)
T ss_pred CcccccccCCCHHHHHH-HHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence 999964321 1111111 1112233466677777777777776666665554433
No 327
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.97 E-value=0.00012 Score=74.60 Aligned_cols=155 Identities=15% Similarity=0.254 Sum_probs=80.1
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCC--------CcchhhhcCCCCcccChHHHHHH
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGG--------TDYAEFLHAPRKKFTDFAAVRKE 106 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~--------~~~~~~~~~~~~~~~d~~~v~~~ 106 (461)
...|++||.+|+||||.+-.|... +.-.+ .+....+.+...+.. ..|++.+..+-....++.++...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~-~~~~~----~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~ 248 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAI-YGINS----DDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEE 248 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHhhh----ccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHH
Confidence 357899999999999999988754 10000 001112222223321 12222222221222334443332
Q ss_pred HHHHhhhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCc
Q 012559 107 ISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD 186 (461)
Q Consensus 107 i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d 186 (461)
+. .. ...++.||||||..... ... ...+..+... .. ++.-+++|++|+..
T Consensus 249 L~----~~-------------------~~~DlVLIDTaGr~~~~----~~~-l~el~~~l~~-~~-~~~e~~LVlsat~~ 298 (388)
T PRK12723 249 IT----QS-------------------KDFDLVLVDTIGKSPKD----FMK-LAEMKELLNA-CG-RDAEFHLAVSSTTK 298 (388)
T ss_pred HH----Hh-------------------CCCCEEEEcCCCCCccC----HHH-HHHHHHHHHh-cC-CCCeEEEEEcCCCC
Confidence 22 11 12689999999976421 111 1122222222 22 23235667777754
Q ss_pred cccHHHHHHHHHhCCCCCceEEEeccCCccCCCccHHHHHh
Q 012559 187 IATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLE 227 (461)
Q Consensus 187 ~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~ 227 (461)
..+..++++.+.+. ..+=+|+||.|....+..+..++.
T Consensus 299 --~~~~~~~~~~~~~~-~~~~~I~TKlDet~~~G~~l~~~~ 336 (388)
T PRK12723 299 --TSDVKEIFHQFSPF-SYKTVIFTKLDETTCVGNLISLIY 336 (388)
T ss_pred --HHHHHHHHHHhcCC-CCCEEEEEeccCCCcchHHHHHHH
Confidence 33344566666543 356678999999988777777654
No 328
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.97 E-value=1.6e-05 Score=75.70 Aligned_cols=75 Identities=16% Similarity=0.223 Sum_probs=32.9
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhc-CCCeEEEEEecCCCccccHH----HH-HHHHHhCCCCCceEEE
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE-KPSCIILAISPANQDIATSD----AI-KLAREVDPTGERTFGV 209 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~-~~~~iIL~V~~a~~d~~~~~----~l-~l~~~~d~~~~rti~V 209 (461)
.++.|+||||....-.. ...+..+ .+++. +-+.+++.++|+..-..... .+ .+.-.+ ..+.|.|.|
T Consensus 91 ~~y~l~DtPGQiElf~~------~~~~~~i-~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~-~~~lP~vnv 162 (238)
T PF03029_consen 91 DDYLLFDTPGQIELFTH------SDSGRKI-VERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIML-RLELPHVNV 162 (238)
T ss_dssp -SEEEEE--SSHHHHHH------SHHHHHH-HHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHH-HHTSEEEEE
T ss_pred CcEEEEeCCCCEEEEEe------chhHHHH-HHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHh-hCCCCEEEe
Confidence 37899999998764211 1112333 34444 44556666777652211111 11 011111 136899999
Q ss_pred eccCCccCC
Q 012559 210 LTKLDLMDK 218 (461)
Q Consensus 210 ltK~D~~~~ 218 (461)
+||+|++++
T Consensus 163 lsK~Dl~~~ 171 (238)
T PF03029_consen 163 LSKIDLLSK 171 (238)
T ss_dssp E--GGGS-H
T ss_pred eeccCcccc
Confidence 999999963
No 329
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.94 E-value=6.7e-06 Score=83.75 Aligned_cols=27 Identities=37% Similarity=0.539 Sum_probs=24.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDF 60 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~ 60 (461)
+.-+|.+||.||+||||+||+|+|.+.
T Consensus 313 ~~vtVG~VGYPNVGKSSTINaLvG~Kk 339 (562)
T KOG1424|consen 313 DVVTVGFVGYPNVGKSSTINALVGRKK 339 (562)
T ss_pred ceeEEEeecCCCCchhHHHHHHhcCce
Confidence 457899999999999999999999986
No 330
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.94 E-value=2.3e-06 Score=75.39 Aligned_cols=69 Identities=17% Similarity=0.271 Sum_probs=43.0
Q ss_pred CcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhC--CCCCceEEEeccCC
Q 012559 137 NLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVD--PTGERTFGVLTKLD 214 (461)
Q Consensus 137 ~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d--~~~~rti~VltK~D 214 (461)
.+.+|||.|.... ..+.+.|.+.+.+.+|+..- ....+-...+.+-+++. -...||++|-||+|
T Consensus 70 r~mlWdtagqeEf-------------DaItkAyyrgaqa~vLVFST-TDr~SFea~~~w~~kv~~e~~~IPtV~vqNKID 135 (246)
T KOG4252|consen 70 RSMLWDTAGQEEF-------------DAITKAYYRGAQASVLVFST-TDRYSFEATLEWYNKVQKETERIPTVFVQNKID 135 (246)
T ss_pred HHHHHHhccchhH-------------HHHHHHHhccccceEEEEec-ccHHHHHHHHHHHHHHHHHhccCCeEEeeccch
Confidence 4568999995432 56788999988865555432 22222222233333332 23689999999999
Q ss_pred ccCCC
Q 012559 215 LMDKG 219 (461)
Q Consensus 215 ~~~~~ 219 (461)
+++..
T Consensus 136 lveds 140 (246)
T KOG4252|consen 136 LVEDS 140 (246)
T ss_pred hhHhh
Confidence 99654
No 331
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=4.3e-05 Score=79.82 Aligned_cols=134 Identities=16% Similarity=0.287 Sum_probs=81.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
..-.|+++|.-.+|||+|+..|.+... |... .+.+..|+.++.. +. +
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tH-p~~~-----~~~e~~lrytD~l----------------~~--------E--- 173 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTH-PDFS-----KNTEADLRYTDTL----------------FY--------E--- 173 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceecc-cccc-----ccccccccccccc----------------hh--------h---
Confidence 556799999999999999999999865 4432 2222222222110 00 0
Q ss_pred hcCCCCcccCccEEEEEecC--CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH
Q 012559 114 ITGKSKQISNIPIQLSIYSP--NVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD 191 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p--~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~ 191 (461)
...+.++-..++.+-.... .-.-++++||||..... +-+...++-.|.++| |+++-.+.....
T Consensus 174 -~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF~-------------DE~ta~l~~sDgvVl-vvDv~EGVmlnt 238 (971)
T KOG0468|consen 174 -QERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHVNFS-------------DETTASLRLSDGVVL-VVDVAEGVMLNT 238 (971)
T ss_pred -HhcCceEeecceEEEEecCcCceeeeeeecCCCcccch-------------HHHHHHhhhcceEEE-EEEcccCceeeH
Confidence 1112233344444444332 23568999999988763 223445666775554 455555555444
Q ss_pred HHHHHHHhCCCCCceEEEeccCCcc
Q 012559 192 AIKLAREVDPTGERTFGVLTKLDLM 216 (461)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~ 216 (461)
.. +++..-.+..++.+|+||+|.+
T Consensus 239 Er-~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 239 ER-IIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred HH-HHHHHHhccCcEEEEEehhHHH
Confidence 33 5666666789999999999975
No 332
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.92 E-value=3.3e-05 Score=75.13 Aligned_cols=104 Identities=24% Similarity=0.326 Sum_probs=64.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
+-+.|.+||-||+||||++|+|+....-|-....||--|.+=+.- .+..+| +.
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~-------------v~d~Rf--------------d~ 71 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVE-------------VPDSRF--------------DL 71 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceee-------------cCchHH--------------HH
Confidence 457999999999999999999998876444444677666532210 011111 11
Q ss_pred hcCCCCcccCccEEEEEecCCC---CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCC
Q 012559 114 ITGKSKQISNIPIQLSIYSPNV---VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPAN 184 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~---~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~ 184 (461)
.+. +++|.. ..|+++|..|+++.+..|+. +-+--.+.|++.|+|+ -|+.+.
T Consensus 72 l~~-------------~Y~~~~~vpa~l~v~DIAGLvkGAs~G~G------LGN~FLs~iR~vDaif-hVVr~f 125 (391)
T KOG1491|consen 72 LCP-------------IYGPKSKVPAFLTVYDIAGLVKGASAGEG------LGNKFLSHIRHVDAIF-HVVRAF 125 (391)
T ss_pred HHH-------------hcCCcceeeeeEEEEeecccccCcccCcC------chHHHHHhhhhcccee-EEEEec
Confidence 111 233321 47899999999998765432 2445567788889754 444443
No 333
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.91 E-value=0.00017 Score=68.43 Aligned_cols=37 Identities=16% Similarity=0.326 Sum_probs=26.3
Q ss_pred HHHHHHhccCCCCCCccCCCCCEEEEECCCCCCHHHHHHHhhCC
Q 012559 15 QRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 15 q~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
++++..+-.+. -+-+.|.|-|.|++|||||+++|...
T Consensus 16 ~~ll~~l~~~~-------g~a~~iGiTG~PGaGKSTli~~l~~~ 52 (266)
T PF03308_consen 16 RELLKRLYPHT-------GRAHVIGITGPPGAGKSTLIDALIRE 52 (266)
T ss_dssp HHHHHHHGGGT-------T-SEEEEEEE-TTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhhc-------CCceEEEeeCCCCCcHHHHHHHHHHH
Confidence 44555554443 24689999999999999999999843
No 334
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.88 E-value=5.2e-05 Score=67.24 Aligned_cols=27 Identities=37% Similarity=0.487 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDF 60 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~ 60 (461)
...+++++|.+++||||++|+|.+...
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~ 126 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHS 126 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc
Confidence 346789999999999999999998654
No 335
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=6e-05 Score=63.86 Aligned_cols=119 Identities=18% Similarity=0.276 Sum_probs=76.9
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
+-.-+++|+-++|||.||..++..+| +..||..|-+
T Consensus 11 ifkyiiigdmgvgkscllhqftekkf-------madcphtigv------------------------------------- 46 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKF-------MADCPHTIGV------------------------------------- 46 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHH-------hhcCCcccce-------------------------------------
Confidence 34568999999999999999999877 3345531110
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcc---ccHH
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI---ATSD 191 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~---~~~~ 191 (461)
.|-.. .+++++. ...|.++||.|..+. +...++|.+.+.. .|+|-+..... ..+.
T Consensus 47 -----efgtr--iievsgq-kiklqiwdtagqerf-------------ravtrsyyrgaag-almvyditrrstynhlss 104 (215)
T KOG0097|consen 47 -----EFGTR--IIEVSGQ-KIKLQIWDTAGQERF-------------RAVTRSYYRGAAG-ALMVYDITRRSTYNHLSS 104 (215)
T ss_pred -----eccee--EEEecCc-EEEEEEeecccHHHH-------------HHHHHHHhccccc-eeEEEEehhhhhhhhHHH
Confidence 01111 1234443 367899999996553 7889999998775 44454443221 2245
Q ss_pred HHHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 192 AIKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
++.-++.+..-..-++++-||.|+-+..
T Consensus 105 wl~dar~ltnpnt~i~lignkadle~qr 132 (215)
T KOG0097|consen 105 WLTDARNLTNPNTVIFLIGNKADLESQR 132 (215)
T ss_pred HHhhhhccCCCceEEEEecchhhhhhcc
Confidence 5555666654456677789999997655
No 336
>PRK10867 signal recognition particle protein; Provisional
Probab=97.85 E-value=0.00043 Score=71.42 Aligned_cols=81 Identities=25% Similarity=0.355 Sum_probs=50.0
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCc
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 215 (461)
.++.||||||-... .......+..+. ..+ .|+.+ ++|+++. ..+++...++.+...-..+-+|+||+|.
T Consensus 184 ~DvVIIDTaGrl~~-----d~~lm~eL~~i~-~~v-~p~ev-llVlda~---~gq~av~~a~~F~~~~~i~giIlTKlD~ 252 (433)
T PRK10867 184 YDVVIVDTAGRLHI-----DEELMDELKAIK-AAV-NPDEI-LLVVDAM---TGQDAVNTAKAFNEALGLTGVILTKLDG 252 (433)
T ss_pred CCEEEEeCCCCccc-----CHHHHHHHHHHH-Hhh-CCCeE-EEEEecc---cHHHHHHHHHHHHhhCCCCEEEEeCccC
Confidence 68999999997653 123333333332 222 55644 5666665 3467777777776544456789999998
Q ss_pred cCCCccHHHHHh
Q 012559 216 MDKGTNALEVLE 227 (461)
Q Consensus 216 ~~~~~~~~~~l~ 227 (461)
...+..+..+..
T Consensus 253 ~~rgG~alsi~~ 264 (433)
T PRK10867 253 DARGGAALSIRA 264 (433)
T ss_pred cccccHHHHHHH
Confidence 766655555543
No 337
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=97.83 E-value=6.7e-05 Score=70.98 Aligned_cols=119 Identities=19% Similarity=0.308 Sum_probs=67.5
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCC--ccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG--IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~--~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
+|+++|..+|||||..+.+.+. ..|+.+. -.|-.+.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~-~~p~dT~~L~~T~~ve----------------------------------------- 38 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHK-YSPRDTLRLEPTIDVE----------------------------------------- 38 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEE-----------------------------------------
T ss_pred CEEEEcCCCCChhhHHHHHHcC-CCchhccccCCcCCce-----------------------------------------
Confidence 5899999999999999999986 3344332 0111111
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCC-Ccccc----
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPAN-QDIAT---- 189 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~-~d~~~---- 189 (461)
.-.+.-.+...+.+||.||....... .....-....++..+ +++|.|+. .++..
T Consensus 39 ------------~~~v~~~~~~~l~iwD~pGq~~~~~~--------~~~~~~~~if~~v~~-LIyV~D~qs~~~~~~l~~ 97 (232)
T PF04670_consen 39 ------------KSHVRFLSFLPLNIWDCPGQDDFMEN--------YFNSQREEIFSNVGV-LIYVFDAQSDDYDEDLAY 97 (232)
T ss_dssp ------------EEEEECTTSCEEEEEEE-SSCSTTHT--------THTCCHHHHHCTESE-EEEEEETT-STCHHHHHH
T ss_pred ------------EEEEecCCCcEEEEEEcCCccccccc--------cccccHHHHHhccCE-EEEEEEcccccHHHHHHH
Confidence 01122234468999999998765311 001112334567775 55666776 44322
Q ss_pred -HHHHHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 190 -SDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 190 -~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
...++.+.+..| +...-+.+.|+|++.++
T Consensus 98 ~~~~i~~l~~~sp-~~~v~vfiHK~D~l~~~ 127 (232)
T PF04670_consen 98 LSDCIEALRQYSP-NIKVFVFIHKMDLLSED 127 (232)
T ss_dssp HHHHHHHHHHHST-T-EEEEEEE-CCCS-HH
T ss_pred HHHHHHHHHHhCC-CCeEEEEEeecccCCHH
Confidence 233445667777 57888999999998644
No 338
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.83 E-value=0.0001 Score=77.98 Aligned_cols=132 Identities=17% Similarity=0.227 Sum_probs=82.3
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHh
Q 012559 32 WEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDET 111 (461)
Q Consensus 32 ~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~ 111 (461)
.++.|-++|+|+-.+|||-||..|-|.++---.+|..|... |..|.....|+..-..-.
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqI---------------------gAt~fp~~ni~e~tk~~~ 530 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQI---------------------GATYFPAENIREKTKELK 530 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhccccccccccceeeec---------------------cccccchHHHHHHHHHHH
Confidence 46889999999999999999999999876333333333221 222333333332211111
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH
Q 012559 112 DRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD 191 (461)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~ 191 (461)
. .+ -..-..|.+.+|||||..++ .++-.+....+|- +++|++...++..+.
T Consensus 531 ~--~~-------------K~~~kvPg~lvIdtpghEsF-------------tnlRsrgsslC~~-aIlvvdImhGlepqt 581 (1064)
T KOG1144|consen 531 K--DA-------------KKRLKVPGLLVIDTPGHESF-------------TNLRSRGSSLCDL-AILVVDIMHGLEPQT 581 (1064)
T ss_pred h--hh-------------hhhcCCCeeEEecCCCchhh-------------hhhhhccccccce-EEEEeehhccCCcch
Confidence 1 11 01124588999999996654 4555566667784 455556555666554
Q ss_pred --HHHHHHHhCCCCCceEEEeccCCcc
Q 012559 192 --AIKLAREVDPTGERTFGVLTKLDLM 216 (461)
Q Consensus 192 --~l~l~~~~d~~~~rti~VltK~D~~ 216 (461)
.+.++| ....|.|+.+||+|.+
T Consensus 582 iESi~lLR---~rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 582 IESINLLR---MRKTPFIVALNKIDRL 605 (1064)
T ss_pred hHHHHHHH---hcCCCeEEeehhhhhh
Confidence 444544 4578999999999987
No 339
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.82 E-value=8.9e-05 Score=72.79 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=23.2
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDF 60 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~ 60 (461)
..++++|.+|+|||||+|+|+|...
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~ 186 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLD 186 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhh
Confidence 5799999999999999999999865
No 340
>PRK00098 GTPase RsgA; Reviewed
Probab=97.80 E-value=7.1e-05 Score=73.90 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=22.5
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDF 60 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~ 60 (461)
-.++++|.+|+|||||+|+|+|..-
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcC
Confidence 4699999999999999999999753
No 341
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.80 E-value=0.00019 Score=75.07 Aligned_cols=80 Identities=28% Similarity=0.312 Sum_probs=45.3
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCc
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 215 (461)
.+++||||||..... ....+++..+ .... ... .++|++++.. ..+...+++.+... ...-+|+||+|.
T Consensus 429 ~DLVLIDTaG~s~~D-----~~l~eeL~~L-~aa~-~~a--~lLVLpAtss--~~Dl~eii~~f~~~-~~~gvILTKlDE 496 (559)
T PRK12727 429 YKLVLIDTAGMGQRD-----RALAAQLNWL-RAAR-QVT--SLLVLPANAH--FSDLDEVVRRFAHA-KPQGVVLTKLDE 496 (559)
T ss_pred CCEEEecCCCcchhh-----HHHHHHHHHH-HHhh-cCC--cEEEEECCCC--hhHHHHHHHHHHhh-CCeEEEEecCcC
Confidence 689999999986531 1222222222 2222 222 3445555532 33444455555443 456789999999
Q ss_pred cCCCccHHHHHh
Q 012559 216 MDKGTNALEVLE 227 (461)
Q Consensus 216 ~~~~~~~~~~l~ 227 (461)
......+.+++.
T Consensus 497 t~~lG~aLsv~~ 508 (559)
T PRK12727 497 TGRFGSALSVVV 508 (559)
T ss_pred ccchhHHHHHHH
Confidence 876656666654
No 342
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.78 E-value=0.0002 Score=69.65 Aligned_cols=83 Identities=23% Similarity=0.297 Sum_probs=47.5
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHH---HHhc-CCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEec
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVR---SYVE-KPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLT 211 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~---~yi~-~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~Vlt 211 (461)
.++.||||||.... .....+++..+.. ..+. .++. +++|++++. .++++..+..+...-...-+|+|
T Consensus 155 ~D~ViIDT~G~~~~-----d~~~~~el~~~~~~~~~~~~~~~~~-~~LVl~a~~---~~~~~~~~~~f~~~~~~~g~IlT 225 (272)
T TIGR00064 155 IDVVLIDTAGRLQN-----KVNLMDELKKIKRVIKKVDKDAPDE-VLLVLDATT---GQNALEQAKVFNEAVGLTGIILT 225 (272)
T ss_pred CCEEEEeCCCCCcc-----hHHHHHHHHHHHHHHhcccCCCCce-EEEEEECCC---CHHHHHHHHHHHhhCCCCEEEEE
Confidence 68999999998653 1223333333322 1222 2554 455666653 33344444444332245778999
Q ss_pred cCCccCCCccHHHHHh
Q 012559 212 KLDLMDKGTNALEVLE 227 (461)
Q Consensus 212 K~D~~~~~~~~~~~l~ 227 (461)
|+|.......+..+..
T Consensus 226 KlDe~~~~G~~l~~~~ 241 (272)
T TIGR00064 226 KLDGTAKGGIILSIAY 241 (272)
T ss_pred ccCCCCCccHHHHHHH
Confidence 9999877766666554
No 343
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.77 E-value=6.3e-05 Score=72.95 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCC
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
--..|++|..|+|||||+|+|.+.
T Consensus 164 ~~~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 164 GKITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred CCeEEEECCCCCcHHHHHHhhCch
Confidence 347899999999999999999985
No 344
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=0.00015 Score=74.58 Aligned_cols=112 Identities=26% Similarity=0.482 Sum_probs=72.4
Q ss_pred CCCEEE-EECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhh
Q 012559 34 ALPSVA-VVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (461)
Q Consensus 34 ~lP~Iv-VvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~ 112 (461)
..|.|+ |||.+++|||||+.+|+.+ + |.. +.+
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr-~--------tk~--------------------------------------ti~ 99 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRR-F--------TKQ--------------------------------------TID 99 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHH-H--------HHh--------------------------------------hhh
Confidence 567766 9999999999999999965 3 000 112
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHH
Q 012559 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (461)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~ 192 (461)
.+.| .+.+.+.....+||...|. + + ..|+ .-.+-+| ++|+.++++.++.....
T Consensus 100 ~i~G----------PiTvvsgK~RRiTflEcp~--D---------l----~~mi-DvaKIaD-LVlLlIdgnfGfEMETm 152 (1077)
T COG5192 100 EIRG----------PITVVSGKTRRITFLECPS--D---------L----HQMI-DVAKIAD-LVLLLIDGNFGFEMETM 152 (1077)
T ss_pred ccCC----------ceEEeecceeEEEEEeChH--H---------H----HHHH-hHHHhhh-eeEEEeccccCceehHH
Confidence 2233 1234444557889998883 1 1 1121 1222345 78888899988877654
Q ss_pred HHHHHHhCCCC-CceEEEeccCCccCCCc
Q 012559 193 IKLAREVDPTG-ERTFGVLTKLDLMDKGT 220 (461)
Q Consensus 193 l~l~~~~d~~~-~rti~VltK~D~~~~~~ 220 (461)
. ++.-+.+.| .|++||+|..|+.....
T Consensus 153 E-FLnil~~HGmPrvlgV~ThlDlfk~~s 180 (1077)
T COG5192 153 E-FLNILISHGMPRVLGVVTHLDLFKNPS 180 (1077)
T ss_pred H-HHHHHhhcCCCceEEEEeecccccChH
Confidence 3 555556666 46889999999987654
No 345
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=0.00023 Score=68.07 Aligned_cols=131 Identities=19% Similarity=0.341 Sum_probs=80.4
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
.-.|..||+...|||||--||++. ..-.+ ...+.+++++.+.=+ +
T Consensus 12 hVNigtiGHvdHGKTTLtaAit~~-la~~~-----------------------------~~~~~~y~~id~aPe---E-- 56 (394)
T COG0050 12 HVNVGTIGHVDHGKTTLTAAITTV-LAKKG-----------------------------GAEAKAYDQIDNAPE---E-- 56 (394)
T ss_pred eeEEEEeccccCchhhHHHHHHHH-HHhhc-----------------------------cccccchhhhccCch---H--
Confidence 456899999999999999999975 11111 112223333321100 1
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc-HHHH
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT-SDAI 193 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~-~~~l 193 (461)
...+++-+.-+++..+.+ .....||.||.-+ .+++|+....+- |..||+|..+...... .+-.
T Consensus 57 --k~rGITIntahveyet~~-rhyahVDcPGHaD------------YvKNMItgAaqm-DgAILVVsA~dGpmPqTrEHi 120 (394)
T COG0050 57 --KARGITINTAHVEYETAN-RHYAHVDCPGHAD------------YVKNMITGAAQM-DGAILVVAATDGPMPQTREHI 120 (394)
T ss_pred --hhcCceeccceeEEecCC-ceEEeccCCChHH------------HHHHHhhhHHhc-CccEEEEEcCCCCCCcchhhh
Confidence 123344555556666554 6789999999543 347777666655 5567777766544332 2333
Q ss_pred HHHHHhCCCCC-ceEEEeccCCccCCC
Q 012559 194 KLAREVDPTGE-RTFGVLTKLDLMDKG 219 (461)
Q Consensus 194 ~l~~~~d~~~~-rti~VltK~D~~~~~ 219 (461)
-+++++ |. +++.++||+|+++..
T Consensus 121 Llarqv---Gvp~ivvflnK~Dmvdd~ 144 (394)
T COG0050 121 LLARQV---GVPYIVVFLNKVDMVDDE 144 (394)
T ss_pred hhhhhc---CCcEEEEEEecccccCcH
Confidence 377877 55 567789999999854
No 346
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.70 E-value=0.0001 Score=74.63 Aligned_cols=134 Identities=19% Similarity=0.281 Sum_probs=79.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
+.....+|-+-..|||||-..|+... +..+.+- .++++-+.++-
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t------~~~~~Re------------------------------m~~Q~LDsMdi 51 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELT------GGLSERE------------------------------MRAQVLDSMDI 51 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHh------cCcChHH------------------------------HHHHhhhhhhh
Confidence 45677888899999999999998653 2222221 11222122221
Q ss_pred hcCCCCcccCccEEEEEecC--CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH
Q 012559 114 ITGKSKQISNIPIQLSIYSP--NVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD 191 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p--~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~ 191 (461)
....+-++-...+++..... ....|.||||||..+..- + |.+.+..+.. .|+|+||.++...|.
T Consensus 52 ERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsY------------E-VSRSLAACEG-alLvVDAsQGveAQT 117 (603)
T COG0481 52 ERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSY------------E-VSRSLAACEG-ALLVVDASQGVEAQT 117 (603)
T ss_pred HhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEE------------E-ehhhHhhCCC-cEEEEECccchHHHH
Confidence 11112333344455544432 457899999999988741 1 2233333443 355667778887776
Q ss_pred HHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
..+.-..++ .+--+|-|+||+|+-..
T Consensus 118 lAN~YlAle-~~LeIiPViNKIDLP~A 143 (603)
T COG0481 118 LANVYLALE-NNLEIIPVLNKIDLPAA 143 (603)
T ss_pred HHHHHHHHH-cCcEEEEeeecccCCCC
Confidence 544333343 35778999999999743
No 347
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=97.67 E-value=0.00011 Score=63.64 Aligned_cols=118 Identities=14% Similarity=0.181 Sum_probs=71.6
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 115 (461)
=.||++|.--+|||||+=..+..+|.-. . ++-++..
T Consensus 14 FK~VLLGEGCVGKtSLVLRy~EnkFn~k--------------------------------H---lsTlQAS--------- 49 (218)
T KOG0088|consen 14 FKIVLLGEGCVGKTSLVLRYVENKFNCK--------------------------------H---LSTLQAS--------- 49 (218)
T ss_pred eEEEEEcCCccchhHHHHHHHHhhcchh--------------------------------h---HHHHHHH---------
Confidence 3689999999999999999998877100 0 0011111
Q ss_pred CCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHH
Q 012559 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (461)
Q Consensus 116 g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 195 (461)
|-++.+. +.+ ...+|.+|||.|..+. ..+---|.+..|..+|+. +....-+-+....+
T Consensus 50 -----F~~kk~n--~ed-~ra~L~IWDTAGQErf-------------HALGPIYYRgSnGalLVy-DITDrdSFqKVKnW 107 (218)
T KOG0088|consen 50 -----FQNKKVN--VED-CRADLHIWDTAGQERF-------------HALGPIYYRGSNGALLVY-DITDRDSFQKVKNW 107 (218)
T ss_pred -----Hhhcccc--ccc-ceeeeeeeeccchHhh-------------hccCceEEeCCCceEEEE-eccchHHHHHHHHH
Confidence 1111111 222 3468999999997665 455567889999755554 33322222333334
Q ss_pred HHHh---CCCCCceEEEeccCCccCCC
Q 012559 196 AREV---DPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 196 ~~~~---d~~~~rti~VltK~D~~~~~ 219 (461)
.+++ -.+..-.++|-||+|+-++.
T Consensus 108 V~Elr~mlGnei~l~IVGNKiDLEeeR 134 (218)
T KOG0088|consen 108 VLELRTMLGNEIELLIVGNKIDLEEER 134 (218)
T ss_pred HHHHHHHhCCeeEEEEecCcccHHHhh
Confidence 4443 34456788999999997543
No 348
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.65 E-value=0.00031 Score=63.41 Aligned_cols=79 Identities=25% Similarity=0.386 Sum_probs=43.4
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCc
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 215 (461)
.++.++||||.... .......+..+. . ...++.++ +|+++.. ..+..+.+..+.....-.-+|+||+|.
T Consensus 83 ~d~viiDt~g~~~~-----~~~~l~~l~~l~-~-~~~~~~~~-lVv~~~~---~~~~~~~~~~~~~~~~~~~viltk~D~ 151 (173)
T cd03115 83 FDVVIVDTAGRLQI-----DENLMEELKKIK-R-VVKPDEVL-LVVDAMT---GQDAVNQAKAFNEALGITGVILTKLDG 151 (173)
T ss_pred CCEEEEECcccchh-----hHHHHHHHHHHH-h-hcCCCeEE-EEEECCC---ChHHHHHHHHHHhhCCCCEEEEECCcC
Confidence 67899999997643 122222222221 1 12356544 4555542 233444455543222257788999999
Q ss_pred cCCCccHHHH
Q 012559 216 MDKGTNALEV 225 (461)
Q Consensus 216 ~~~~~~~~~~ 225 (461)
.........+
T Consensus 152 ~~~~g~~~~~ 161 (173)
T cd03115 152 DARGGAALSI 161 (173)
T ss_pred CCCcchhhhh
Confidence 8776555543
No 349
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.64 E-value=3.7e-05 Score=75.34 Aligned_cols=144 Identities=27% Similarity=0.414 Sum_probs=82.5
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCc----cccccEEEEEeecCCCC-cchhhhcCCCCcccChHHHHHHHHHHh
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGI----VTRRPLVLQLHQTEGGT-DYAEFLHAPRKKFTDFAAVRKEISDET 111 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~----~Tr~p~~i~l~~~~~~~-~~~~~~~~~~~~~~d~~~v~~~i~~~~ 111 (461)
+++|+|.-.+|||||+--|+... |..|.|- .-|.|.||+-.++.+.. +.--| .....+-++++-+ +.
T Consensus 169 RvAVlGg~D~GKSTLlGVLTQge-LDnG~GrARln~FRh~HEiqsGrTSsis~evlGF--d~~g~vVNY~~~~-----ta 240 (591)
T KOG1143|consen 169 RVAVLGGCDVGKSTLLGVLTQGE-LDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGF--DNRGKVVNYAQNM-----TA 240 (591)
T ss_pred EEEEecCcccCcceeeeeeeccc-ccCCCCeeeeehhcchhhhccCcccccchhcccc--cccccccchhhcc-----cH
Confidence 79999999999999999998765 4555553 44778777765553320 00001 1111122222211 00
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCC--cccc
Q 012559 112 DRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ--DIAT 189 (461)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~--d~~~ 189 (461)
+. |......-++|||+.|-.++-.. . +.. ...| .|++.. +|++|+. .+++
T Consensus 241 EE----------------i~e~SSKlvTfiDLAGh~kY~~T----T----i~g-LtgY--~Ph~A~-LvVsA~~Gi~~tT 292 (591)
T KOG1143|consen 241 EE----------------IVEKSSKLVTFIDLAGHAKYQKT----T----IHG-LTGY--TPHFAC-LVVSADRGITWTT 292 (591)
T ss_pred HH----------------HHhhhcceEEEeecccchhhhee----e----eee-cccC--CCceEE-EEEEcCCCCcccc
Confidence 01 11111245789999997765210 0 011 1123 355434 4445554 4566
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 190 SDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 190 ~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
.+-+.++..+ ..|.++++||+|+.++.
T Consensus 293 rEHLgl~~AL---~iPfFvlvtK~Dl~~~~ 319 (591)
T KOG1143|consen 293 REHLGLIAAL---NIPFFVLVTKMDLVDRQ 319 (591)
T ss_pred HHHHHHHHHh---CCCeEEEEEeeccccch
Confidence 7777777776 48999999999999875
No 350
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.63 E-value=6.1e-05 Score=70.62 Aligned_cols=101 Identities=23% Similarity=0.305 Sum_probs=64.6
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCc---cccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI---VTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDET 111 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~---~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~ 111 (461)
--++.++|-||+||||++..|+|.. -|+.+.- -|+.|..++
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~-s~vasyefttl~~vpG~~~----------------------------------- 102 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTF-SEVAAYEFTTLTTVPGVIR----------------------------------- 102 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCC-CccccccceeEEEecceEe-----------------------------------
Confidence 3478889999999999999999984 3444432 223333222
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH
Q 012559 112 DRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD 191 (461)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~ 191 (461)
...+.+.+.|+||++..+.++... -..+....+..+ +|+.|.++...+....
T Consensus 103 ---------------------y~gaKiqlldlpgiiegakdgkgr------g~qviavartcn-li~~vld~~kp~~hk~ 154 (358)
T KOG1487|consen 103 ---------------------YKGAKIQLLDLPGIIEGAKDGKGR------GKQVIAVARTCN-LIFIVLDVLKPLSHKK 154 (358)
T ss_pred ---------------------ccccceeeecCcchhcccccCCCC------ccEEEEEeeccc-EEEEEeeccCcccHHH
Confidence 233778999999999987654322 122333344556 5778888887776554
Q ss_pred HHHHHHHhCC
Q 012559 192 AIKLAREVDP 201 (461)
Q Consensus 192 ~l~l~~~~d~ 201 (461)
.+ -+++..
T Consensus 155 ~i--e~eleg 162 (358)
T KOG1487|consen 155 II--EKELEG 162 (358)
T ss_pred HH--HHhhhc
Confidence 43 345543
No 351
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=0.00026 Score=71.44 Aligned_cols=108 Identities=18% Similarity=0.179 Sum_probs=57.5
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCc-eEEEeccCC
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGER-TFGVLTKLD 214 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~r-ti~VltK~D 214 (461)
..++|||.||.-+. +.+|+. -+.-.|+ .++|++++.++..+... .+.-+|-.|.+ .++|+||+|
T Consensus 50 ~~~~fIDvpgh~~~------------i~~mia-g~~~~d~-alLvV~~deGl~~qtgE-hL~iLdllgi~~giivltk~D 114 (447)
T COG3276 50 GVMGFIDVPGHPDF------------ISNLLA-GLGGIDY-ALLVVAADEGLMAQTGE-HLLILDLLGIKNGIIVLTKAD 114 (447)
T ss_pred CceEEeeCCCcHHH------------HHHHHh-hhcCCce-EEEEEeCccCcchhhHH-HHHHHHhcCCCceEEEEeccc
Confidence 47999999996542 244432 2334454 56677777666555443 33334444554 499999999
Q ss_pred ccCCCc---cHHHHHhCcccccCCCeeEEEeCChhhhcccccHHHHHH
Q 012559 215 LMDKGT---NALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARR 259 (461)
Q Consensus 215 ~~~~~~---~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (461)
..++.. -...++.+.. ......+.+...+.++++++...+..+.
T Consensus 115 ~~d~~r~e~~i~~Il~~l~-l~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 115 RVDEARIEQKIKQILADLS-LANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred cccHHHHHHHHHHHHhhcc-cccccccccccccCCCHHHHHHHHHHhh
Confidence 997541 1223333222 1112334444444455555444444333
No 352
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.57 E-value=6.7e-05 Score=74.45 Aligned_cols=33 Identities=30% Similarity=0.339 Sum_probs=28.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG 66 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~ 66 (461)
..-++.|||-||+|||||+|+|...+..|+|..
T Consensus 251 ~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~ 283 (435)
T KOG2484|consen 251 TSIRVGIIGYPNVGKSSVINSLKRRKACNVGNV 283 (435)
T ss_pred cceEeeeecCCCCChhHHHHHHHHhccccCCCC
Confidence 567899999999999999999999888776654
No 353
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.57 E-value=0.0015 Score=66.15 Aligned_cols=79 Identities=24% Similarity=0.329 Sum_probs=54.2
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCc
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 215 (461)
.++.||||.|=... .+.+.+++..+ +-.-+|+- +|+|+||. .-|++...|+.++..-.=|=+|+||+|-
T Consensus 183 ~DvvIvDTAGRl~i-----de~Lm~El~~I--k~~~~P~E-~llVvDam---~GQdA~~~A~aF~e~l~itGvIlTKlDG 251 (451)
T COG0541 183 YDVVIVDTAGRLHI-----DEELMDELKEI--KEVINPDE-TLLVVDAM---IGQDAVNTAKAFNEALGITGVILTKLDG 251 (451)
T ss_pred CCEEEEeCCCcccc-----cHHHHHHHHHH--HhhcCCCe-EEEEEecc---cchHHHHHHHHHhhhcCCceEEEEcccC
Confidence 68999999997664 23343333322 33456775 55556654 4688888999998876677889999998
Q ss_pred cCCCccHHHH
Q 012559 216 MDKGTNALEV 225 (461)
Q Consensus 216 ~~~~~~~~~~ 225 (461)
-.++.-++.+
T Consensus 252 daRGGaALS~ 261 (451)
T COG0541 252 DARGGAALSA 261 (451)
T ss_pred CCcchHHHhh
Confidence 8777555443
No 354
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.57 E-value=0.00049 Score=80.01 Aligned_cols=56 Identities=27% Similarity=0.383 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCccCCCCCEEEEECCCCCCHHHHHHHhhCCCCCccC
Q 012559 7 LIGLINKIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRG 64 (461)
Q Consensus 7 l~~~~~~lq~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~ 64 (461)
+-.+-.++.++...+.....+....-..||=.+|+|.++|||||+|+.- |.+| |-.
T Consensus 83 ~~~l~~~~~~a~~~Lk~~~~~~~~~lY~LPWYlviG~~gsGKtt~l~~s-gl~~-pl~ 138 (1169)
T TIGR03348 83 IRELRARFNEALALLKRSRLGGRRYLYDLPWYLVIGPPGSGKTTLLQNS-GLKF-PLA 138 (1169)
T ss_pred HHHHHHHHHHHHHHHhhccccCchhhhcCCCEEEECCCCCchhHHHHhC-CCCC-cCc
Confidence 3445667777777775432111121238999999999999999999998 8775 554
No 355
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.55 E-value=0.0033 Score=60.69 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=22.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
+-+.|.+-|.|++|||||+++|.-.
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~ 74 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRE 74 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHH
Confidence 5689999999999999999999743
No 356
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.55 E-value=0.0012 Score=66.46 Aligned_cols=161 Identities=18% Similarity=0.258 Sum_probs=94.1
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCC--------CcchhhhcCCCCcccChHHHHHH
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGG--------TDYAEFLHAPRKKFTDFAAVRKE 106 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~--------~~~~~~~~~~~~~~~d~~~v~~~ 106 (461)
-..|++||+.|+||||.|-.|..+-++-- -..+ +-+..++.- +.|+..+..|-....+..+...+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~----~~~k---VaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~a 275 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLK----KKKK---VAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEA 275 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhc----cCcc---eEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHH
Confidence 56799999999999999999887622000 0011 111112221 45666666666666666666655
Q ss_pred HHHHhhhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCC-CeEEEEEecCCC
Q 012559 107 ISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKP-SCIILAISPANQ 185 (461)
Q Consensus 107 i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~-~~iIL~V~~a~~ 185 (461)
+..-. ..+++||||-|-.... ...+.+ ...|+... +.-+.+|.+++.
T Consensus 276 i~~l~-----------------------~~d~ILVDTaGrs~~D--------~~~i~e-l~~~~~~~~~i~~~Lvlsat~ 323 (407)
T COG1419 276 IEALR-----------------------DCDVILVDTAGRSQYD--------KEKIEE-LKELIDVSHSIEVYLVLSATT 323 (407)
T ss_pred HHHhh-----------------------cCCEEEEeCCCCCccC--------HHHHHH-HHHHHhccccceEEEEEecCc
Confidence 53322 2489999999976532 222222 33455433 334566777773
Q ss_pred ccccHHHHHHHHHhCCCCCceEEEeccCCccCCCccHHHHHhCcccccCCCeeE
Q 012559 186 DIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVG 239 (461)
Q Consensus 186 d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~ 239 (461)
...+...+...+...+... +++||+|....-.+...++. ...+...|+.
T Consensus 324 --K~~dlkei~~~f~~~~i~~-~I~TKlDET~s~G~~~s~~~--e~~~PV~YvT 372 (407)
T COG1419 324 --KYEDLKEIIKQFSLFPIDG-LIFTKLDETTSLGNLFSLMY--ETRLPVSYVT 372 (407)
T ss_pred --chHHHHHHHHHhccCCcce-eEEEcccccCchhHHHHHHH--HhCCCeEEEe
Confidence 2345555667776654444 57999998865556777665 3333344443
No 357
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.54 E-value=0.00057 Score=70.49 Aligned_cols=81 Identities=27% Similarity=0.356 Sum_probs=50.3
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCc
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 215 (461)
.++.||||||.... .......+..+.. .-+++.+ ++|+++. ..+++...++.+...-..+=+|+||+|.
T Consensus 183 ~DvVIIDTaGr~~~-----d~~l~~eL~~i~~--~~~p~e~-lLVvda~---tgq~~~~~a~~f~~~v~i~giIlTKlD~ 251 (428)
T TIGR00959 183 FDVVIVDTAGRLQI-----DEELMEELAAIKE--ILNPDEI-LLVVDAM---TGQDAVNTAKTFNERLGLTGVVLTKLDG 251 (428)
T ss_pred CCEEEEeCCCcccc-----CHHHHHHHHHHHH--hhCCceE-EEEEecc---chHHHHHHHHHHHhhCCCCEEEEeCccC
Confidence 68999999997653 2333333333322 3356654 5555665 3467777777776433456778999997
Q ss_pred cCCCccHHHHHh
Q 012559 216 MDKGTNALEVLE 227 (461)
Q Consensus 216 ~~~~~~~~~~l~ 227 (461)
...+..+..+..
T Consensus 252 ~~~~G~~lsi~~ 263 (428)
T TIGR00959 252 DARGGAALSVRS 263 (428)
T ss_pred cccccHHHHHHH
Confidence 766655555543
No 358
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.52 E-value=0.00084 Score=62.23 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=21.1
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
..|+++|.++||||||++.+++.
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999976
No 359
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=97.51 E-value=0.00038 Score=59.33 Aligned_cols=116 Identities=16% Similarity=0.207 Sum_probs=76.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
.--+|.+.|--|+||||+|.-|.+.+. + ..|
T Consensus 16 rEirilllGldnAGKTT~LKqL~sED~--~---hlt-------------------------------------------- 46 (185)
T KOG0074|consen 16 REIRILLLGLDNAGKTTFLKQLKSEDP--R---HLT-------------------------------------------- 46 (185)
T ss_pred ceEEEEEEecCCCcchhHHHHHccCCh--h---hcc--------------------------------------------
Confidence 446899999999999999999999874 1 111
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
..++|+.+. +.+.....|+++|.-|-... +.....|..+.|.+|.++.++..........
T Consensus 47 ---pT~GFn~k~----v~~~g~f~LnvwDiGGqr~I-------------RpyWsNYyenvd~lIyVIDS~D~krfeE~~~ 106 (185)
T KOG0074|consen 47 ---PTNGFNTKK----VEYDGTFHLNVWDIGGQRGI-------------RPYWSNYYENVDGLIYVIDSTDEKRFEEISE 106 (185)
T ss_pred ---ccCCcceEE----EeecCcEEEEEEecCCcccc-------------chhhhhhhhccceEEEEEeCCchHhHHHHHH
Confidence 112344332 44445578999999996543 6778899999997665554333222222222
Q ss_pred H---HHHHhCCCCCceEEEeccCCccCC
Q 012559 194 K---LAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 194 ~---l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
. +..+..-...+..+-.||-|++..
T Consensus 107 el~ELleeeKl~~vpvlIfankQdllta 134 (185)
T KOG0074|consen 107 ELVELLEEEKLAEVPVLIFANKQDLLTA 134 (185)
T ss_pred HHHHHhhhhhhhccceeehhhhhHHHhh
Confidence 2 344444445778888899998744
No 360
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.45 E-value=0.0014 Score=68.48 Aligned_cols=91 Identities=23% Similarity=0.256 Sum_probs=50.1
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCc
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 215 (461)
.+..+|||+|..... ..+.+.+. +.... ..+.- .++|.++..+. .+..+.++.+... ..+-+|+||+|.
T Consensus 335 ~d~VLIDTaGr~~~d-----~~~~e~~~-~l~~~-~~p~e-~~LVLdAt~~~--~~l~~i~~~f~~~-~~~g~IlTKlDe 403 (484)
T PRK06995 335 KHIVLIDTIGMSQRD-----RMVSEQIA-MLHGA-GAPVK-RLLLLNATSHG--DTLNEVVQAYRGP-GLAGCILTKLDE 403 (484)
T ss_pred CCeEEeCCCCcChhh-----HHHHHHHH-HHhcc-CCCCe-eEEEEeCCCcH--HHHHHHHHHhccC-CCCEEEEeCCCC
Confidence 478999999976531 11111111 11111 11332 45566666332 3344566666664 356678999999
Q ss_pred cCCCccHHHHHhCcccccCCCeeE
Q 012559 216 MDKGTNALEVLEGRSYRLQHPWVG 239 (461)
Q Consensus 216 ~~~~~~~~~~l~~~~~~l~~g~~~ 239 (461)
......+.+++. ...+..-|++
T Consensus 404 t~~~G~~l~i~~--~~~lPI~yvt 425 (484)
T PRK06995 404 AASLGGALDVVI--RYKLPLHYVS 425 (484)
T ss_pred cccchHHHHHHH--HHCCCeEEEe
Confidence 877767777765 3333334443
No 361
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.45 E-value=0.00033 Score=65.35 Aligned_cols=25 Identities=20% Similarity=0.461 Sum_probs=23.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
..|.|+++|..|||||||++.++..
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999999999865
No 362
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=97.43 E-value=0.00026 Score=75.33 Aligned_cols=129 Identities=22% Similarity=0.225 Sum_probs=82.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
....|++|.+-..|||||..+|+...= -+..|-+..|++ .|+-+-+ .+..
T Consensus 8 ~irn~~~vahvdhgktsladsl~asng-----vis~rlagkirf--------------------ld~rede-----q~rg 57 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASNG-----VISSRLAGKIRF--------------------LDTREDE-----QTRG 57 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhcc-----Eechhhccceee--------------------ccccchh-----hhhc
Confidence 567899999999999999999986541 234444544442 2221110 1222
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
++-...++|. -....-+.|||+||..+.. ..+.+...=.| ..|+.+|+..+...+...
T Consensus 58 itmkss~is~--------~~~~~~~nlidspghvdf~-------------sevssas~l~d-~alvlvdvvegv~~qt~~ 115 (887)
T KOG0467|consen 58 ITMKSSAISL--------LHKDYLINLIDSPGHVDFS-------------SEVSSASRLSD-GALVLVDVVEGVCSQTYA 115 (887)
T ss_pred eeeecccccc--------ccCceEEEEecCCCccchh-------------hhhhhhhhhcC-CcEEEEeeccccchhHHH
Confidence 2222223331 1133568899999998873 33444444455 467777888888776654
Q ss_pred HHHHHhCCCCCceEEEeccCCc
Q 012559 194 KLAREVDPTGERTFGVLTKLDL 215 (461)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~ 215 (461)
++|+.--.+.+.|+||||+|.
T Consensus 116 -vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 116 -VLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred -HHHHHHHccCceEEEEehhhh
Confidence 778766678999999999994
No 363
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.41 E-value=0.0028 Score=59.08 Aligned_cols=87 Identities=23% Similarity=0.368 Sum_probs=51.9
Q ss_pred CCcEEEeC-CCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccH-HHHHHHHHhCCCCCceEEEeccC
Q 012559 136 VNLTLIDL-PGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS-DAIKLAREVDPTGERTFGVLTKL 213 (461)
Q Consensus 136 ~~l~lvDt-PGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~-~~l~l~~~~d~~~~rti~VltK~ 213 (461)
.++.+||| .|+.. +-+.-++..|.+|++|.++...+.+. ...+|+.++. -.|+.+|+||+
T Consensus 134 ~e~VivDtEAGiEH----------------fgRg~~~~vD~vivVvDpS~~sl~taeri~~L~~elg--~k~i~~V~NKv 195 (255)
T COG3640 134 YEVVIVDTEAGIEH----------------FGRGTIEGVDLVIVVVDPSYKSLRTAERIKELAEELG--IKRIFVVLNKV 195 (255)
T ss_pred CcEEEEecccchhh----------------hccccccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhC--CceEEEEEeec
Confidence 46788888 66543 34455667785555554444344332 2334555553 28999999999
Q ss_pred CccCCCccHHHHHhCcccccCCCeeEEEeCChh
Q 012559 214 DLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQA 246 (461)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~ 246 (461)
|.. . ..+......+++...++++.+++
T Consensus 196 ~e~--e----~~~~~~~~~~~~~vlg~iP~d~~ 222 (255)
T COG3640 196 DEE--E----ELLRELAEELGLEVLGVIPYDPE 222 (255)
T ss_pred cch--h----HHHHhhhhccCCeEEEEccCCHH
Confidence 975 1 12222244566777888887754
No 364
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.0014 Score=55.87 Aligned_cols=123 Identities=21% Similarity=0.263 Sum_probs=77.3
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
--+|+.+|-..|||||+|-.|.-.. .+|-.|+
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~-------~~~~ipT----------------------------------------- 48 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQ-------SVTTIPT----------------------------------------- 48 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCC-------Ccccccc-----------------------------------------
Confidence 4789999999999999999987442 2333332
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHH
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 194 (461)
.| |+-+. ......-+.++|+-|..+ ++.+.++|......+|+++.+|..|--...-.+
T Consensus 49 vG----Fnvet-----VtykN~kfNvwdvGGqd~-------------iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~E 106 (180)
T KOG0071|consen 49 VG----FNVET-----VTYKNVKFNVWDVGGQDK-------------IRPLWRHYYTGTQGLIFVVDSADRDRIEEARNE 106 (180)
T ss_pred cc----eeEEE-----EEeeeeEEeeeeccCchh-------------hhHHHHhhccCCceEEEEEeccchhhHHHHHHH
Confidence 12 22222 122335677899999655 388999999999988888887765322222222
Q ss_pred HHHHhCC---CCCceEEEeccCCccCCCc--cHHHHHh
Q 012559 195 LAREVDP---TGERTFGVLTKLDLMDKGT--NALEVLE 227 (461)
Q Consensus 195 l~~~~d~---~~~rti~VltK~D~~~~~~--~~~~~l~ 227 (461)
+-+-+.. ...+.++..||-|+.+.-. ++.+.++
T Consensus 107 Lh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~le 144 (180)
T KOG0071|consen 107 LHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLE 144 (180)
T ss_pred HHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhc
Confidence 3333322 2345667789999875432 4556665
No 365
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.00019 Score=63.34 Aligned_cols=112 Identities=14% Similarity=0.214 Sum_probs=64.9
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCC-cccc--HHHHHHHHHhCCCCCceEEEec
Q 012559 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIAT--SDAIKLAREVDPTGERTFGVLT 211 (461)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~-d~~~--~~~l~l~~~~d~~~~rti~Vlt 211 (461)
...|.|||+-|.-. .+++...|...++.||.++.+.+. .+.. +.-..+.+.=+-.|.|.+..+|
T Consensus 68 ~~~l~fwdlgGQe~-------------lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lan 134 (197)
T KOG0076|consen 68 NAPLSFWDLGGQES-------------LRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLAN 134 (197)
T ss_pred cceeEEEEcCChHH-------------HHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcc
Confidence 36789999999443 288999999999976655544441 2221 1112233333456899999999
Q ss_pred cCCccCCCc--cHHHHHh-Ccc-cccCCCeeEEEeCChhhhcccccHHHHHH
Q 012559 212 KLDLMDKGT--NALEVLE-GRS-YRLQHPWVGIVNRSQADINKNVDMIAARR 259 (461)
Q Consensus 212 K~D~~~~~~--~~~~~l~-~~~-~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (461)
|-|+-+..+ ++..++. ... ...-..+.+|.....+++++++.+.....
T Consensus 135 kqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~ 186 (197)
T KOG0076|consen 135 KQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKL 186 (197)
T ss_pred hhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHH
Confidence 999875432 2222222 111 11223455555555566666666655443
No 366
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=97.38 E-value=0.00014 Score=75.35 Aligned_cols=84 Identities=20% Similarity=0.215 Sum_probs=47.1
Q ss_pred cccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccc---------cH
Q 012559 120 QISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIA---------TS 190 (461)
Q Consensus 120 ~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~---------~~ 190 (461)
+|+-++-...+. ++...++|+|.||.-.+ +.+|+. -+..+|..||+| +|+.+.. +.
T Consensus 240 GvTm~v~~~~fe-s~~~~~tliDaPGhkdF------------i~nmi~-g~sqaD~avLvv-d~s~~~FE~gfd~~gQtr 304 (603)
T KOG0458|consen 240 GVTMDVKTTWFE-SKSKIVTLIDAPGHKDF------------IPNMIS-GASQADVAVLVV-DASTGEFESGFDPGGQTR 304 (603)
T ss_pred ceeEEeeeEEEe-cCceeEEEecCCCcccc------------chhhhc-cccccceEEEEE-ECCcchhhhccCCCCchH
Confidence 344443333333 55689999999994433 133332 344567545554 5543221 12
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCccCCCc
Q 012559 191 DAIKLAREVDPTGERTFGVLTKLDLMDKGT 220 (461)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~~~ 220 (461)
+...+++-+. -...|+++||+|+++=..
T Consensus 305 Eha~llr~Lg--i~qlivaiNKmD~V~Wsq 332 (603)
T KOG0458|consen 305 EHALLLRSLG--ISQLIVAINKMDLVSWSQ 332 (603)
T ss_pred HHHHHHHHcC--cceEEEEeecccccCccH
Confidence 2333556554 356788999999996443
No 367
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.00081 Score=59.03 Aligned_cols=124 Identities=17% Similarity=0.286 Sum_probs=79.2
Q ss_pred HHHHHHhccCCCCCCccCCCCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCC
Q 012559 15 QRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPR 94 (461)
Q Consensus 15 q~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~ 94 (461)
.++++.+|- +-+...+++.|--||||||||+-|-..+. +.-..|-.|+
T Consensus 8 ~~VLq~LgL--------~kK~gKllFlGLDNAGKTTLLHMLKdDrl---~qhvPTlHPT--------------------- 55 (193)
T KOG0077|consen 8 SSVLQFLGL--------YKKFGKLLFLGLDNAGKTTLLHMLKDDRL---GQHVPTLHPT--------------------- 55 (193)
T ss_pred HHHHHHHHH--------hccCceEEEEeecCCchhhHHHHHccccc---cccCCCcCCC---------------------
Confidence 345555653 23678999999999999999999976643 2224555554
Q ss_pred CcccChHHHHHHHHHHhhhh-cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCC
Q 012559 95 KKFTDFAAVRKEISDETDRI-TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKP 173 (461)
Q Consensus 95 ~~~~d~~~v~~~i~~~~~~~-~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~ 173 (461)
.+.. .| ....+-+|+-|.... +...+.|+...
T Consensus 56 ----------------SE~l~Ig------------------~m~ftt~DLGGH~qA-------------rr~wkdyf~~v 88 (193)
T KOG0077|consen 56 ----------------SEELSIG------------------GMTFTTFDLGGHLQA-------------RRVWKDYFPQV 88 (193)
T ss_pred ----------------hHHheec------------------CceEEEEccccHHHH-------------HHHHHHHHhhh
Confidence 1111 12 256788999996542 77889999999
Q ss_pred CeEEEEEecCCCcccc-----HHHHHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 174 SCIILAISPANQDIAT-----SDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 174 ~~iIL~V~~a~~d~~~-----~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
|+|+..|..+....-. .+++-....+ ...|.++..||+|.-..-
T Consensus 89 ~~iv~lvda~d~er~~es~~eld~ll~~e~l--a~vp~lilgnKId~p~a~ 137 (193)
T KOG0077|consen 89 DAIVYLVDAYDQERFAESKKELDALLSDESL--ATVPFLILGNKIDIPYAA 137 (193)
T ss_pred ceeEeeeehhhHHHhHHHHHHHHHHHhHHHH--hcCcceeecccccCCCcc
Confidence 9877666555432211 1111011111 357999999999987543
No 368
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.36 E-value=0.00037 Score=67.44 Aligned_cols=45 Identities=18% Similarity=0.298 Sum_probs=30.7
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEG 82 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~ 82 (461)
-.|..||+-..|||||..||+|.-. -+. .--.++-+.|+|...+.
T Consensus 11 vNIG~vGHVdHGKtTlv~AlsGvwT-~~h-seElkRgitIkLGYAd~ 55 (415)
T COG5257 11 VNIGMVGHVDHGKTTLTKALSGVWT-DRH-SEELKRGITIKLGYADA 55 (415)
T ss_pred eEeeeeeecccchhhheehhhceee-ech-hHHHhcCcEEEeccccC
Confidence 3588999999999999999999743 111 12335555666655443
No 369
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.33 E-value=0.002 Score=62.91 Aligned_cols=66 Identities=17% Similarity=0.361 Sum_probs=43.9
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCC--eEEEEEecCCCccccHHHHH--HHHHhCCCCCceEEEec
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPS--CIILAISPANQDIATSDAIK--LAREVDPTGERTFGVLT 211 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~--~iIL~V~~a~~d~~~~~~l~--l~~~~d~~~~rti~Vlt 211 (461)
.+++|||.||.- .+++.-|..+. .+.++|+|+..+..++.+.- +...+ ....++|+|
T Consensus 70 lq~tlvDCPGHa----------------sLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~---c~klvvvin 130 (522)
T KOG0461|consen 70 LQFTLVDCPGHA----------------SLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL---CKKLVVVIN 130 (522)
T ss_pred ceeEEEeCCCcH----------------HHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh---ccceEEEEe
Confidence 567999999953 34555555443 24567888887777766532 33333 356889999
Q ss_pred cCCccCCCc
Q 012559 212 KLDLMDKGT 220 (461)
Q Consensus 212 K~D~~~~~~ 220 (461)
|+|...++.
T Consensus 131 kid~lpE~q 139 (522)
T KOG0461|consen 131 KIDVLPENQ 139 (522)
T ss_pred ccccccchh
Confidence 999987643
No 370
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=97.30 E-value=0.00015 Score=66.21 Aligned_cols=117 Identities=24% Similarity=0.288 Sum_probs=68.4
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 115 (461)
-.+||||+..+|||+||-+.+-..| |.. ..|++.
T Consensus 5 ~K~VvVGDga~GKT~ll~~~t~~~f-p~~-----yvPTVF---------------------------------------- 38 (198)
T KOG0393|consen 5 IKCVVVGDGAVGKTCLLISYTTNAF-PEE-----YVPTVF---------------------------------------- 38 (198)
T ss_pred eEEEEECCCCcCceEEEEEeccCcC-ccc-----ccCeEE----------------------------------------
Confidence 5689999999999999999887654 543 233311
Q ss_pred CCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCC-Cccc--cHHH
Q 012559 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPAN-QDIA--TSDA 192 (461)
Q Consensus 116 g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~-~d~~--~~~~ 192 (461)
.+-...+.+.......|.|+||.|..+.. .++-+ .+.++|.++++..-.+ ..+. ...+
T Consensus 39 ------dnys~~v~V~dg~~v~L~LwDTAGqedYD----------rlRpl---sY~~tdvfl~cfsv~~p~S~~nv~~kW 99 (198)
T KOG0393|consen 39 ------DNYSANVTVDDGKPVELGLWDTAGQEDYD----------RLRPL---SYPQTDVFLLCFSVVSPESFENVKSKW 99 (198)
T ss_pred ------ccceEEEEecCCCEEEEeeeecCCCcccc----------ccccc---CCCCCCEEEEEEEcCChhhHHHHHhhh
Confidence 11112233322233568999999976642 12322 4456675544322111 1111 1233
Q ss_pred HHHHHHhCCCCCceEEEeccCCccCC
Q 012559 193 IKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
..-++...| +.|+|+|.||.|+.+.
T Consensus 100 ~pEi~~~cp-~vpiiLVGtk~DLr~d 124 (198)
T KOG0393|consen 100 IPEIKHHCP-NVPIILVGTKADLRDD 124 (198)
T ss_pred hHHHHhhCC-CCCEEEEeehHHhhhC
Confidence 333444555 5999999999999843
No 371
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.00039 Score=69.09 Aligned_cols=135 Identities=16% Similarity=0.230 Sum_probs=86.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhh
Q 012559 33 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (461)
Q Consensus 33 ~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~ 112 (461)
.++..|.|+..-.+||||.-|.|+-.. -.++.... ...|..++||-.+..+
T Consensus 35 akirnigiiahidagktttterily~a-------g~~~s~g~----------------vddgdtvtdfla~ere------ 85 (753)
T KOG0464|consen 35 AKIRNIGIIAHIDAGKTTTTERILYLA-------GAIHSAGD----------------VDDGDTVTDFLAIERE------ 85 (753)
T ss_pred hhhhcceeEEEecCCCchhHHHHHHHh-------hhhhcccc----------------cCCCchHHHHHHHHHh------
Confidence 366789999999999999999998542 11222110 1234566777665432
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHH
Q 012559 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (461)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~ 192 (461)
.| -.+-...+ -+.+....+.+|||||..+... + |.+.++--|. +++|.+++.+...+..
T Consensus 86 --rg--itiqsaav---~fdwkg~rinlidtpghvdf~l-----e--------verclrvldg-avav~dasagve~qtl 144 (753)
T KOG0464|consen 86 --RG--ITIQSAAV---NFDWKGHRINLIDTPGHVDFRL-----E--------VERCLRVLDG-AVAVFDASAGVEAQTL 144 (753)
T ss_pred --cC--ceeeeeee---ecccccceEeeecCCCcceEEE-----E--------HHHHHHHhcC-eEEEEeccCCccccee
Confidence 12 11111111 1345557899999999988632 2 3333443353 6788888887776653
Q ss_pred HHHHHHhCCCCCceEEEeccCCccCC
Q 012559 193 IKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
.+-++.+....|.+..+||+|....
T Consensus 145 -tvwrqadk~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 145 -TVWRQADKFKIPAHCFINKMDKLAA 169 (753)
T ss_pred -eeehhccccCCchhhhhhhhhhhhh
Confidence 3678888889999999999999854
No 372
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.28 E-value=0.00025 Score=68.51 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=22.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.-+++.|||-||+|||||+||+-...
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~ 167 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVH 167 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHH
Confidence 45899999999999999999987654
No 373
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.19 E-value=0.0017 Score=63.28 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=23.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
....|.|+|.+||||||||+.+++.
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999986
No 374
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=97.17 E-value=0.00068 Score=74.83 Aligned_cols=24 Identities=42% Similarity=0.621 Sum_probs=20.8
Q ss_pred ECCCCCCHHHHHHHhhCCCCCccCC
Q 012559 41 VGGQSSGKSSVLESVVGRDFLPRGS 65 (461)
Q Consensus 41 vG~~ssGKSSllnal~G~~~lP~~~ 65 (461)
+|.||+|||||||.|.|..| ++-.
T Consensus 1 ~g~qssgkstlln~lf~t~f-~~m~ 24 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQF-DVMD 24 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCc-cccc
Confidence 59999999999999999987 5543
No 375
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.0017 Score=55.63 Aligned_cols=73 Identities=15% Similarity=0.233 Sum_probs=51.4
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccc---cHHHHHHHHHhCCCCCceEEEe
Q 012559 134 NVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIA---TSDAIKLAREVDPTGERTFGVL 210 (461)
Q Consensus 134 ~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~---~~~~l~l~~~~d~~~~rti~Vl 210 (461)
....+.++|+-|-.+. +-..+.|..+.+.+|.+|.+++.|-- ..+-..++++-.-.+...+++.
T Consensus 60 KNLk~~vwdLggqtSi-------------rPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~a 126 (182)
T KOG0072|consen 60 KNLKFQVWDLGGQTSI-------------RPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFA 126 (182)
T ss_pred ccccceeeEccCcccc-------------cHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEe
Confidence 3467889999997764 67889999999998888888775422 2222334443333467788899
Q ss_pred ccCCccCCC
Q 012559 211 TKLDLMDKG 219 (461)
Q Consensus 211 tK~D~~~~~ 219 (461)
||.|....-
T Consensus 127 nKqD~~~~~ 135 (182)
T KOG0072|consen 127 NKQDYSGAL 135 (182)
T ss_pred ccccchhhh
Confidence 999986443
No 376
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.067 Score=52.62 Aligned_cols=27 Identities=33% Similarity=0.601 Sum_probs=24.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHhhCCC
Q 012559 33 EALPSVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 33 ~~lP~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.+.-.|.|+|.||+|||+||+-|.+..
T Consensus 186 tdf~VIgvlG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 186 TDFTVIGVLGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred CCeeEEEeecCCCccHHHHHHHHhccC
Confidence 378899999999999999999999874
No 377
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=96.97 E-value=0.0025 Score=65.76 Aligned_cols=28 Identities=46% Similarity=0.698 Sum_probs=26.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHhhCCCC
Q 012559 33 EALPSVAVVGGQSSGKSSVLESVVGRDF 60 (461)
Q Consensus 33 ~~lP~IvVvG~~ssGKSSllnal~G~~~ 60 (461)
.+--.|+|+|+||+|||||||.|.|..|
T Consensus 35 l~YhVVavmG~QSSGKSTLLN~LFgTnF 62 (772)
T KOG2203|consen 35 LSYHVVAVMGSQSSGKSTLLNHLFGTNF 62 (772)
T ss_pred cceeEEEEecCcccchHHHHHHHhccCh
Confidence 4668899999999999999999999987
No 378
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.95 E-value=0.0022 Score=67.02 Aligned_cols=134 Identities=13% Similarity=0.163 Sum_probs=75.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
++..|.++-+--|||+|+-|.++-..- . +..-.++ ..+...+|+.+...+ ..
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G------~-~~~i~ev----------------~~~~a~md~m~~er~-----rg 89 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTG------R-IKHIGEV----------------RGGGATMDSMELERQ-----RG 89 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecc------e-eeecccc----------------ccCceeeehHHHHHh-----cC
Confidence 567889999999999999999874321 0 0000000 011223344443321 11
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
++.. ... .-+.++..++.+|||||.++... + |.+.++--|..+++++ +-.+...|. .
T Consensus 90 ITiq-----SAA---t~~~w~~~~iNiIDTPGHvDFT~-----E--------VeRALrVlDGaVlvl~-aV~GVqsQt-~ 146 (721)
T KOG0465|consen 90 ITIQ-----SAA---TYFTWRDYRINIIDTPGHVDFTF-----E--------VERALRVLDGAVLVLD-AVAGVESQT-E 146 (721)
T ss_pred ceee-----ece---eeeeeccceeEEecCCCceeEEE-----E--------ehhhhhhccCeEEEEE-cccceehhh-H
Confidence 1110 000 12344578999999999998742 2 3334443354343333 323333333 3
Q ss_pred HHHHHhCCCCCceEEEeccCCccCC
Q 012559 194 KLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
..-++....+.|.|..+||+|.+..
T Consensus 147 tV~rQ~~ry~vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 147 TVWRQMKRYNVPRICFINKMDRMGA 171 (721)
T ss_pred HHHHHHHhcCCCeEEEEehhhhcCC
Confidence 3667777779999999999999943
No 379
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=96.94 E-value=0.0055 Score=60.31 Aligned_cols=144 Identities=19% Similarity=0.255 Sum_probs=83.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCC------CCcccChHHHHHHH
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAP------RKKFTDFAAVRKEI 107 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~------~~~~~d~~~v~~~i 107 (461)
.+.+++-||+---|||||+-.|+-..- .+ . ..-...++.. ...-.||.-+.+-+
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk-----~i-----~----------eDQla~l~~dS~~~~t~g~~~D~ALLvDGL 64 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTK-----AI-----Y----------EDQLASLERDSKRKGTQGEKIDLALLVDGL 64 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcch-----hh-----h----------HHHHHHHhcccccccCCCCccchhhhhhhh
Confidence 578999999999999999999986421 00 0 0001111111 11234777777766
Q ss_pred HHHhhhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcc
Q 012559 108 SDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI 187 (461)
Q Consensus 108 ~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~ 187 (461)
+.+++. | ++-++- .+.++-....+++.||||.... .++|+... +.++. .+++++|..++
T Consensus 65 ~AEREQ--G----ITIDVA-YRyFsT~KRkFIiADTPGHeQY------------TRNMaTGA-STadl-AIlLVDAR~Gv 123 (431)
T COG2895 65 EAEREQ--G----ITIDVA-YRYFSTEKRKFIIADTPGHEQY------------TRNMATGA-STADL-AILLVDARKGV 123 (431)
T ss_pred HHHHhc--C----ceEEEE-eeecccccceEEEecCCcHHHH------------hhhhhccc-ccccE-EEEEEecchhh
Confidence 655543 3 222222 2234445578999999996543 25555432 34454 44455677666
Q ss_pred ccHHHH--HHHHHhCCCCCce-EEEeccCCccCCCcc
Q 012559 188 ATSDAI--KLAREVDPTGERT-FGVLTKLDLMDKGTN 221 (461)
Q Consensus 188 ~~~~~l--~l~~~~d~~~~rt-i~VltK~D~~~~~~~ 221 (461)
-.|.-. .++..+ |.|. ++.+||+|+++-..+
T Consensus 124 l~QTrRHs~I~sLL---GIrhvvvAVNKmDLvdy~e~ 157 (431)
T COG2895 124 LEQTRRHSFIASLL---GIRHVVVAVNKMDLVDYSEE 157 (431)
T ss_pred HHHhHHHHHHHHHh---CCcEEEEEEeeecccccCHH
Confidence 554432 133333 5554 556999999976544
No 380
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.93 E-value=0.0022 Score=60.92 Aligned_cols=134 Identities=21% Similarity=0.324 Sum_probs=77.5
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 115 (461)
=.|..||..+-|||||++.|.+..| ++..++..--.+.|+.. +....
T Consensus 43 FNilCvGETg~GKsTLmdtLFNt~f---~~~p~~H~~~~V~L~~~------------------------------Tyelq 89 (406)
T KOG3859|consen 43 FNILCVGETGLGKSTLMDTLFNTKF---ESEPSTHTLPNVKLQAN------------------------------TYELQ 89 (406)
T ss_pred EEEEEeccCCccHHHHHHHHhcccc---CCCCCccCCCCceeecc------------------------------hhhhh
Confidence 4689999999999999999999887 22233333211222110 00111
Q ss_pred CCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCC-CCccHHHHHHHHHHHHhcC---------------CCeEEEE
Q 012559 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEG-QPESIVEDIENMVRSYVEK---------------PSCIILA 179 (461)
Q Consensus 116 g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~-~~~~~~~~i~~~v~~yi~~---------------~~~iIL~ 179 (461)
. +.-...|++|||-|+.+--..+ .-.-+.+.+...-..|++. -+..+.+
T Consensus 90 E---------------snvrlKLtiv~tvGfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYF 154 (406)
T KOG3859|consen 90 E---------------SNVRLKLTIVDTVGFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYF 154 (406)
T ss_pred h---------------cCeeEEEEEEeecccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEE
Confidence 0 1112468999999997643222 1222444455544555442 1333445
Q ss_pred EecCCCccccHHHHHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 180 ISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 180 V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
+.|....+..-+.. ..+++|. ...+|-||-|.|.+.+.
T Consensus 155 I~PTGH~LKslDLv-tmk~Lds-kVNIIPvIAKaDtisK~ 192 (406)
T KOG3859|consen 155 ISPTGHSLKSLDLV-TMKKLDS-KVNIIPVIAKADTISKE 192 (406)
T ss_pred ecCCCcchhHHHHH-HHHHHhh-hhhhHHHHHHhhhhhHH
Confidence 55655555444433 4577775 57889999999998654
No 381
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=96.72 E-value=0.00037 Score=58.70 Aligned_cols=70 Identities=17% Similarity=0.239 Sum_probs=50.8
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCC-cccc-HHHHHHHHHhCCCCCceEEEeccC
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ-DIAT-SDAIKLAREVDPTGERTFGVLTKL 213 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~-d~~~-~~~l~l~~~~d~~~~rti~VltK~ 213 (461)
..|.++||.|..+. +..+..|.+++|+++|+..-+|. .+.+ +.++.-+.++.....-.+++-||+
T Consensus 47 vklqiwdtagqerf-------------rsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~ 113 (192)
T KOG0083|consen 47 VKLQIWDTAGQERF-------------RSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKC 113 (192)
T ss_pred EEEEEeeccchHHH-------------hhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhcccc
Confidence 57899999997664 78889999999987776655553 2222 445555566655567788999999
Q ss_pred CccCC
Q 012559 214 DLMDK 218 (461)
Q Consensus 214 D~~~~ 218 (461)
|+..+
T Consensus 114 d~a~e 118 (192)
T KOG0083|consen 114 DLAHE 118 (192)
T ss_pred ccchh
Confidence 99753
No 382
>PRK01889 GTPase RsgA; Reviewed
Probab=96.52 E-value=0.0044 Score=62.71 Aligned_cols=25 Identities=28% Similarity=0.659 Sum_probs=22.5
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDF 60 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~ 60 (461)
-.++++|.+|+|||||+|+|+|..-
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 3799999999999999999999753
No 383
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.45 E-value=0.013 Score=58.27 Aligned_cols=25 Identities=16% Similarity=0.385 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
.+|..+|.|--+||||||||.|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 5799999999999999999999854
No 384
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=0.0071 Score=60.19 Aligned_cols=79 Identities=28% Similarity=0.334 Sum_probs=49.6
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCC
Q 012559 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (461)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 214 (461)
..+++||||.|=++- ..++-+++.. +.+++. ||- |++|.||+.+ +.+...++.+...-.-+-++|||+|
T Consensus 183 ~fdvIIvDTSGRh~q-----e~sLfeEM~~-v~~ai~-Pd~-vi~VmDasiG---Qaae~Qa~aFk~~vdvg~vIlTKlD 251 (483)
T KOG0780|consen 183 NFDVIIVDTSGRHKQ-----EASLFEEMKQ-VSKAIK-PDE-IIFVMDASIG---QAAEAQARAFKETVDVGAVILTKLD 251 (483)
T ss_pred CCcEEEEeCCCchhh-----hHHHHHHHHH-HHhhcC-CCe-EEEEEecccc---HhHHHHHHHHHHhhccceEEEEecc
Confidence 478999999997663 3444443333 334444 664 6677777743 4444456666555556678899999
Q ss_pred ccCCCccHHH
Q 012559 215 LMDKGTNALE 224 (461)
Q Consensus 215 ~~~~~~~~~~ 224 (461)
--.++.-++.
T Consensus 252 GhakGGgAlS 261 (483)
T KOG0780|consen 252 GHAKGGGALS 261 (483)
T ss_pred cCCCCCceee
Confidence 8877654333
No 385
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.24 E-value=0.026 Score=55.55 Aligned_cols=83 Identities=20% Similarity=0.270 Sum_probs=54.3
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHH---HHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEecc
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIEN---MVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTK 212 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~---~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK 212 (461)
.++.||||.|=-.+ ..++.++++. .+......+..=+|+|.+|. .-++++.-|+.+...-.=+=+|+||
T Consensus 222 ~DvvliDTAGRLhn-----k~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAt---tGqnal~QAk~F~eav~l~GiIlTK 293 (340)
T COG0552 222 IDVVLIDTAGRLHN-----KKNLMDELKKIVRVIKKDDPDAPHEILLVLDAT---TGQNALSQAKIFNEAVGLDGIILTK 293 (340)
T ss_pred CCEEEEeCcccccC-----chhHHHHHHHHHHHhccccCCCCceEEEEEEcc---cChhHHHHHHHHHHhcCCceEEEEe
Confidence 68999999997765 3455554444 33344443222477777877 3466666677776555567789999
Q ss_pred CCccCCCccHHHHH
Q 012559 213 LDLMDKGTNALEVL 226 (461)
Q Consensus 213 ~D~~~~~~~~~~~l 226 (461)
+|-..+|..+..+.
T Consensus 294 lDgtAKGG~il~I~ 307 (340)
T COG0552 294 LDGTAKGGIILSIA 307 (340)
T ss_pred cccCCCcceeeeHH
Confidence 99877776555543
No 386
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.24 E-value=0.0042 Score=57.30 Aligned_cols=29 Identities=31% Similarity=0.579 Sum_probs=24.4
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccC
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRG 64 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~ 64 (461)
--.|.|+|+.+||||||+|+|+|. ..|.+
T Consensus 32 g~FvtViGsNGAGKSTlln~iaG~-l~~t~ 60 (263)
T COG1101 32 GDFVTVIGSNGAGKSTLLNAIAGD-LKPTS 60 (263)
T ss_pred CceEEEEcCCCccHHHHHHHhhCc-cccCC
Confidence 357999999999999999999998 33444
No 387
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=96.17 E-value=0.011 Score=58.51 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.3
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~ 59 (461)
-+|+|||.-.+||||||--|+.-.
T Consensus 134 ~RVAVVGNVDAGKSTLLGVLTHge 157 (641)
T KOG0463|consen 134 ARVAVVGNVDAGKSTLLGVLTHGE 157 (641)
T ss_pred EEEEEEecccCCcceeEeeeeecc
Confidence 479999999999999998888654
No 388
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=96.13 E-value=0.052 Score=54.77 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
..++|+|||+..||||||..-|++.
T Consensus 72 ~~~~vmvvG~vDSGKSTLt~~LaN~ 96 (398)
T COG1341 72 KVGVVMVVGPVDSGKSTLTTYLANK 96 (398)
T ss_pred CCcEEEEECCcCcCHHHHHHHHHHH
Confidence 5799999999999999998888765
No 389
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.12 E-value=0.012 Score=51.90 Aligned_cols=53 Identities=28% Similarity=0.384 Sum_probs=35.9
Q ss_pred HHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCccC
Q 012559 163 ENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMD 217 (461)
Q Consensus 163 ~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~ 217 (461)
+++.+.++.++| ++++|++++......+ ..+.+.+...+.+.++|+||+|+.+
T Consensus 3 ~~~~~~i~~~aD-~vl~V~D~~~~~~~~~-~~l~~~~~~~~~p~iiv~NK~Dl~~ 55 (156)
T cd01859 3 KRLVRRIIKESD-VVLEVLDARDPELTRS-RKLERYVLELGKKLLIVLNKADLVP 55 (156)
T ss_pred HHHHHHHHhhCC-EEEEEeeCCCCcccCC-HHHHHHHHhCCCcEEEEEEhHHhCC
Confidence 567888888898 5666667765333322 2344444445789999999999974
No 390
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=96.10 E-value=0.012 Score=58.50 Aligned_cols=67 Identities=16% Similarity=0.272 Sum_probs=42.6
Q ss_pred CcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhc-CCCeEEEEEecCCCcccc--HHHHHHHHHhCCCCCceEEEeccC
Q 012559 137 NLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE-KPSCIILAISPANQDIAT--SDAIKLAREVDPTGERTFGVLTKL 213 (461)
Q Consensus 137 ~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~-~~~~iIL~V~~a~~d~~~--~~~l~l~~~~d~~~~rti~VltK~ 213 (461)
-+.||||-|.... ++..++..+. +.| -.|+|+.|+..... .+-+-++- ..+-|+|+|+||+
T Consensus 202 lVsfVDtvGHEpw------------LrTtirGL~gqk~d-YglLvVaAddG~~~~tkEHLgi~~---a~~lPviVvvTK~ 265 (527)
T COG5258 202 LVSFVDTVGHEPW------------LRTTIRGLLGQKVD-YGLLVVAADDGVTKMTKEHLGIAL---AMELPVIVVVTKI 265 (527)
T ss_pred EEEEEecCCccHH------------HHHHHHHHhccccc-eEEEEEEccCCcchhhhHhhhhhh---hhcCCEEEEEEec
Confidence 4679999996432 2444444444 456 56777788766544 22232322 2368999999999
Q ss_pred CccCCC
Q 012559 214 DLMDKG 219 (461)
Q Consensus 214 D~~~~~ 219 (461)
|+.+..
T Consensus 266 D~~~dd 271 (527)
T COG5258 266 DMVPDD 271 (527)
T ss_pred ccCcHH
Confidence 999654
No 391
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=95.97 E-value=0.007 Score=60.28 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=21.9
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDF 60 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~ 60 (461)
-.|.+||.||+||||++|.|-..++
T Consensus 308 ISVGfiGYPNvGKSSiINTLR~KkV 332 (572)
T KOG2423|consen 308 ISVGFIGYPNVGKSSIINTLRKKKV 332 (572)
T ss_pred eeeeeecCCCCchHHHHHHHhhccc
Confidence 4578899999999999999987765
No 392
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=95.97 E-value=0.018 Score=50.98 Aligned_cols=52 Identities=13% Similarity=0.213 Sum_probs=34.3
Q ss_pred HHHHhcCCCeEEEEEecCCCcccc--HHHHHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 166 VRSYVEKPSCIILAISPANQDIAT--SDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 166 v~~yi~~~~~iIL~V~~a~~d~~~--~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
+++.+.++| +|++|+|+...... ....+.++.. ..+.|.|+|+||+|+.++.
T Consensus 2 ~~~~l~~aD-~il~VvD~~~p~~~~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~ 55 (157)
T cd01858 2 LYKVIDSSD-VVIQVLDARDPMGTRCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTW 55 (157)
T ss_pred hhHhhhhCC-EEEEEEECCCCccccCHHHHHHHHhc-cCCCCEEEEEEchhcCCHH
Confidence 456778888 67778888765433 2333333332 2358999999999998543
No 393
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=95.95 E-value=0.024 Score=55.66 Aligned_cols=130 Identities=20% Similarity=0.330 Sum_probs=78.4
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhcC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 116 (461)
.|.-||+-..|||||--||+..- ... .+..+.++++|-+.=++
T Consensus 56 NVGTIGHVDHGKTTLTaAITkil--a~~----------------------------g~A~~~kydeID~APEE------- 98 (449)
T KOG0460|consen 56 NVGTIGHVDHGKTTLTAAITKIL--AEK----------------------------GGAKFKKYDEIDKAPEE------- 98 (449)
T ss_pred cccccccccCCchhHHHHHHHHH--Hhc----------------------------cccccccHhhhhcChhh-------
Confidence 36779999999999999998641 111 11233445544322111
Q ss_pred CCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccc-cHHHHHH
Q 012559 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIA-TSDAIKL 195 (461)
Q Consensus 117 ~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~-~~~~l~l 195 (461)
...+++-+.-+++.+++. ...-=+|.||.-+ .+++|+....+- |..||+|......+. +.+-+-|
T Consensus 99 kaRGITIn~aHveYeTa~-RhYaH~DCPGHAD------------YIKNMItGaaqM-DGaILVVaatDG~MPQTrEHlLL 164 (449)
T KOG0460|consen 99 KARGITINAAHVEYETAK-RHYAHTDCPGHAD------------YIKNMITGAAQM-DGAILVVAATDGPMPQTREHLLL 164 (449)
T ss_pred hhccceEeeeeeeeeccc-cccccCCCCchHH------------HHHHhhcCcccc-CceEEEEEcCCCCCcchHHHHHH
Confidence 123455566667766665 5667789999543 335665544443 445666654443332 2344558
Q ss_pred HHHhCCCCCceEEEeccCCccCCC
Q 012559 196 AREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 196 ~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
|+++.- ..+++.+||.|.+++.
T Consensus 165 ArQVGV--~~ivvfiNKvD~V~d~ 186 (449)
T KOG0460|consen 165 ARQVGV--KHIVVFINKVDLVDDP 186 (449)
T ss_pred HHHcCC--ceEEEEEecccccCCH
Confidence 998853 4667779999999654
No 394
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.92 E-value=0.0073 Score=56.70 Aligned_cols=52 Identities=27% Similarity=0.410 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCC-Ccccc-HHHHHHHHHhCCCCCceEEEeccC
Q 012559 161 DIENMVRSYVEKPSCIILAISPAN-QDIAT-SDAIKLAREVDPTGERTFGVLTKL 213 (461)
Q Consensus 161 ~i~~~v~~yi~~~~~iIL~V~~a~-~d~~~-~~~l~l~~~~d~~~~rti~VltK~ 213 (461)
+--.+++..+.+|. |||+=-|.. -|..+ ...+.+++++......|++++|+=
T Consensus 149 QRVAIARAL~~~P~-iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd 202 (226)
T COG1136 149 QRVAIARALINNPK-IILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHD 202 (226)
T ss_pred HHHHHHHHHhcCCC-eEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 33567888888888 676655543 24444 345677788876667899999983
No 395
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=95.87 E-value=0.0074 Score=54.30 Aligned_cols=31 Identities=29% Similarity=0.462 Sum_probs=26.0
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCC
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG 66 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~ 66 (461)
--+++|+|..+||||||||-|.|... |.+..
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAGF~~-P~~G~ 55 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAGFET-PASGE 55 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHhccC-CCCce
Confidence 35799999999999999999999864 75543
No 396
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.82 E-value=0.0094 Score=44.01 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.3
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
+..++.|+.+|||||++.||.=.
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999998744
No 397
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.77 E-value=0.0093 Score=51.74 Aligned_cols=33 Identities=24% Similarity=0.482 Sum_probs=25.2
Q ss_pred EEEECCCCCCHHHHHHHhhCCCCCccC----CCcccccc
Q 012559 38 VAVVGGQSSGKSSVLESVVGRDFLPRG----SGIVTRRP 72 (461)
Q Consensus 38 IvVvG~~ssGKSSllnal~G~~~lP~~----~~~~Tr~p 72 (461)
|+++|.++||||||++.|.+. +|.. ...+||.|
T Consensus 2 i~i~GpsGsGKstl~~~L~~~--~~~~~~~~v~~tTr~p 38 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE--FDPNFGFSVSHTTRKP 38 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc--CCccceecccccccCC
Confidence 789999999999999999975 2322 23366766
No 398
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=95.72 E-value=0.018 Score=52.78 Aligned_cols=76 Identities=16% Similarity=0.282 Sum_probs=40.9
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhc-CCCeEEEEEecCCC--cccc--HHHHH-HHHHhCCCCCceEEE
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE-KPSCIILAISPANQ--DIAT--SDAIK-LAREVDPTGERTFGV 209 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~-~~~~iIL~V~~a~~--d~~~--~~~l~-l~~~~d~~~~rti~V 209 (461)
.+..++|.||.+..-++ + ..+.++++..-+ +-++..+.+.+++. |... +.++. +...+ ....|.|=|
T Consensus 98 ddylifDcPGQIELytH-----~-pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi-~lE~P~INv 170 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTH-----L-PVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMI-SLEVPHINV 170 (273)
T ss_pred CCEEEEeCCCeeEEeec-----C-hhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHH-HhcCcchhh
Confidence 57789999999875432 1 112333332222 44555666666542 2111 12221 11111 235789999
Q ss_pred eccCCccCC
Q 012559 210 LTKLDLMDK 218 (461)
Q Consensus 210 ltK~D~~~~ 218 (461)
++|+|++..
T Consensus 171 lsKMDLlk~ 179 (273)
T KOG1534|consen 171 LSKMDLLKD 179 (273)
T ss_pred hhHHHHhhh
Confidence 999999865
No 399
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.66 E-value=0.15 Score=47.07 Aligned_cols=20 Identities=20% Similarity=0.446 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHhh
Q 012559 37 SVAVVGGQSSGKSSVLESVV 56 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~ 56 (461)
.++++|..++|||||+..|.
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 59999999999999999998
No 400
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.62 E-value=0.0068 Score=54.05 Aligned_cols=22 Identities=32% Similarity=0.788 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
+|+|+|.+|+|||||+++|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 5899999999999999999865
No 401
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.53 E-value=0.0098 Score=51.10 Aligned_cols=24 Identities=42% Similarity=0.587 Sum_probs=22.0
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~ 59 (461)
-.++|+|..+||||||+++|+|..
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEEccCCCccccceeeecccc
Confidence 468999999999999999999984
No 402
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.52 E-value=0.08 Score=51.82 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=20.8
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
..|+++|..|+||||++..|.+.
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999865
No 403
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.51 E-value=0.01 Score=51.78 Aligned_cols=23 Identities=35% Similarity=0.722 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
|.|.|||..|||||||++.|+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999865
No 404
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=95.51 E-value=0.19 Score=49.87 Aligned_cols=55 Identities=27% Similarity=0.298 Sum_probs=36.0
Q ss_pred HHHHHHHhccCCCCCCccCCCCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEE
Q 012559 14 IQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQL 77 (461)
Q Consensus 14 lq~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l 77 (461)
+|-+++..+.+..+ ..-..|+++|||+.++|||||..-|+..-+ . --|+|+-+.|
T Consensus 85 lH~ale~~R~~~e~---~~~~GPrv~vVGp~d~GKsTl~r~L~nyav-----k-~gr~Plfv~L 139 (415)
T KOG2749|consen 85 LHAALEKRRMQAEE---ESSYGPRVMVVGPTDVGKSTLCRILLNYAV-----K-QGRRPLFVEL 139 (415)
T ss_pred HHHHHHHHhhhhhh---hhccCCEEEEECCCccchHHHHHHHHHHHH-----H-cCCcceEEEc
Confidence 55566666543321 112589999999999999999999886422 1 1456655554
No 405
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.48 E-value=0.014 Score=55.19 Aligned_cols=28 Identities=32% Similarity=0.542 Sum_probs=24.0
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRG 64 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~ 64 (461)
=.|+++|..||||||||+.|.|..- |.+
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~~-p~~ 57 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLEK-PTS 57 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCC
Confidence 4699999999999999999999864 443
No 406
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.45 E-value=0.03 Score=59.89 Aligned_cols=49 Identities=14% Similarity=0.254 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCC-CCceEEEecc
Q 012559 162 IENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPT-GERTFGVLTK 212 (461)
Q Consensus 162 i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~-~~rti~VltK 212 (461)
--.+++..+++++ ||+...++..+-......+.+.+... ..+|++++|+
T Consensus 478 RiaiARall~~~~--iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItH 527 (529)
T TIGR02868 478 RLALARALLADAP--ILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITH 527 (529)
T ss_pred HHHHHHHHhcCCC--EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 3578999999998 56667766544443333344444332 4689999886
No 407
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.43 E-value=0.012 Score=53.72 Aligned_cols=30 Identities=27% Similarity=0.605 Sum_probs=24.5
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI 67 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~ 67 (461)
-.++++|.++|||||++++|+|. +|...+.
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~--i~~~~~~ 55 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAF--IPPDERI 55 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh--cCCCCCE
Confidence 56999999999999999999986 3544443
No 408
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.38 E-value=0.016 Score=52.35 Aligned_cols=37 Identities=24% Similarity=0.407 Sum_probs=26.1
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCC-CccCCCccccccE
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDF-LPRGSGIVTRRPL 73 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~-lP~~~~~~Tr~p~ 73 (461)
.|+++|.++||||||++.|.+..- +-...+.+||.|.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~ 40 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPR 40 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCccccccccceeeCCC
Confidence 489999999999999999998521 1111234666663
No 409
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.33 E-value=0.093 Score=55.80 Aligned_cols=36 Identities=33% Similarity=0.492 Sum_probs=28.0
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCcccccc
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRP 72 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p 72 (461)
--+|++||..|+||||||+.|.|.. -|.+ |.+++-+
T Consensus 29 G~riGLvG~NGaGKSTLLkilaG~~-~~~~-G~i~~~~ 64 (530)
T COG0488 29 GERIGLVGRNGAGKSTLLKILAGEL-EPDS-GEVTRPK 64 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC-cCCC-CeEeecC
Confidence 3589999999999999999999985 2544 4444444
No 410
>PRK13695 putative NTPase; Provisional
Probab=95.31 E-value=0.077 Score=47.80 Aligned_cols=22 Identities=14% Similarity=0.379 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.|+++|.+++|||||+..|.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998765
No 411
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.29 E-value=0.015 Score=51.83 Aligned_cols=32 Identities=38% Similarity=0.683 Sum_probs=25.6
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 69 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~T 69 (461)
-.+.+||..+|||||||++|+++ ++-.+|.+|
T Consensus 33 eVLgiVGESGSGKtTLL~~is~r--l~p~~G~v~ 64 (258)
T COG4107 33 EVLGIVGESGSGKTTLLKCISGR--LTPDAGTVT 64 (258)
T ss_pred cEEEEEecCCCcHHhHHHHHhcc--cCCCCCeEE
Confidence 45889999999999999999998 444555443
No 412
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.16 E-value=0.02 Score=53.32 Aligned_cols=22 Identities=41% Similarity=0.543 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.++++|..+||||||++.|+|.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999997
No 413
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=95.16 E-value=0.041 Score=39.76 Aligned_cols=53 Identities=23% Similarity=0.310 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCCCeEEEEEecCCC--ccccHHHHHHHHHhCCC--CCceEEEeccCC
Q 012559 162 IENMVRSYVEKPSCIILAISPANQ--DIATSDAIKLAREVDPT--GERTFGVLTKLD 214 (461)
Q Consensus 162 i~~~v~~yi~~~~~iIL~V~~a~~--d~~~~~~l~l~~~~d~~--~~rti~VltK~D 214 (461)
++..+...+.+-.+.||++.|.+. +.+.++-+.+.+++.+. +.|.+.|+||+|
T Consensus 2 IE~qai~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 2 IEMQAITALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp HHHHHHHGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hhHHHHHHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 355566677766667888877664 44455555667777664 689999999998
No 414
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.15 E-value=0.36 Score=44.60 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.++|+|..++||||++..|.+.
T Consensus 31 ~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred EEEEECCCCCccHHHHHHHHHH
Confidence 7999999999999999999954
No 415
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.15 E-value=0.018 Score=53.26 Aligned_cols=38 Identities=26% Similarity=0.417 Sum_probs=28.4
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCC-CCccCCCccccccE
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRD-FLPRGSGIVTRRPL 73 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~-~lP~~~~~~Tr~p~ 73 (461)
-.|+++|.++||||||++.|.+.. -+...-..+||.|.
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~ 44 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPR 44 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCC
Confidence 469999999999999999999862 12233345777774
No 416
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=95.14 E-value=0.32 Score=54.07 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEecc
Q 012559 161 DIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTK 212 (461)
Q Consensus 161 ~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK 212 (461)
+--.+++..+++|+ ||+...+...+-......+.+.+.. ..+|++++|+
T Consensus 622 QRiaLARall~~p~--iliLDEptS~LD~~te~~i~~~l~~-~~~T~IiitH 670 (710)
T TIGR03796 622 QRLEIARALVRNPS--ILILDEATSALDPETEKIIDDNLRR-RGCTCIIVAH 670 (710)
T ss_pred HHHHHHHHHhhCCC--EEEEECccccCCHHHHHHHHHHHHh-cCCEEEEEec
Confidence 33568999999999 5556666654444444444555544 3688888886
No 417
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.14 E-value=0.021 Score=49.98 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++|+|..++|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 46899999999999999999973
No 418
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=95.14 E-value=0.039 Score=53.83 Aligned_cols=52 Identities=13% Similarity=0.215 Sum_probs=35.6
Q ss_pred HHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 163 ENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 163 ~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
...+.+.+.++| +||.|+|+........ ..+.+.+. +.+.|+|+||+|+.++
T Consensus 12 ~~~~~~~l~~aD-vVl~V~Dar~p~~~~~-~~i~~~l~--~kp~IiVlNK~DL~~~ 63 (276)
T TIGR03596 12 RREIKEKLKLVD-VVIEVLDARIPLSSRN-PMIDEIRG--NKPRLIVLNKADLADP 63 (276)
T ss_pred HHHHHHHHhhCC-EEEEEEeCCCCCCCCC-hhHHHHHC--CCCEEEEEEccccCCH
Confidence 345678889999 6777788875544332 22444442 5799999999999754
No 419
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.11 E-value=0.02 Score=54.35 Aligned_cols=22 Identities=41% Similarity=0.681 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.++++|..|||||||++.|.|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999997
No 420
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.09 E-value=0.017 Score=52.48 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVV 56 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~ 56 (461)
+.|.|+|+|.++|||||+.+.|.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 56999999999999999999998
No 421
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=95.08 E-value=0.027 Score=57.70 Aligned_cols=66 Identities=17% Similarity=0.226 Sum_probs=45.7
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCc
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 215 (461)
.-+.|||.||..+.+ .-+...++-.|. .|+|+++-.+..-|..- ++++.-....+-++|+||+|.
T Consensus 98 FLiNLIDSPGHVDFS-------------SEVTAALRVTDG-ALVVVDcv~GvCVQTET-VLrQA~~ERIkPvlv~NK~DR 162 (842)
T KOG0469|consen 98 FLINLIDSPGHVDFS-------------SEVTAALRVTDG-ALVVVDCVSGVCVQTET-VLRQAIAERIKPVLVMNKMDR 162 (842)
T ss_pred eeEEeccCCCcccch-------------hhhhheeEeccC-cEEEEEccCceEechHH-HHHHHHHhhccceEEeehhhH
Confidence 457899999998873 335566777774 67777777777665543 344444445666889999996
Q ss_pred c
Q 012559 216 M 216 (461)
Q Consensus 216 ~ 216 (461)
.
T Consensus 163 A 163 (842)
T KOG0469|consen 163 A 163 (842)
T ss_pred H
Confidence 4
No 422
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.06 E-value=0.022 Score=52.13 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++++|..+||||||++.|+|..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 423
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.05 E-value=0.021 Score=53.42 Aligned_cols=22 Identities=45% Similarity=0.585 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.++++|..|||||||++.|+|.
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 6899999999999999999997
No 424
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=95.04 E-value=0.071 Score=49.83 Aligned_cols=20 Identities=30% Similarity=0.406 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHhhC
Q 012559 38 VAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 38 IvVvG~~ssGKSSllnal~G 57 (461)
-+|||+|||||||--+.++.
T Consensus 5 qvVIGPPgSGKsTYc~g~~~ 24 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQ 24 (290)
T ss_pred eEEEcCCCCCccchhhhHHH
Confidence 47899999999998887764
No 425
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=95.03 E-value=0.021 Score=53.29 Aligned_cols=23 Identities=30% Similarity=0.657 Sum_probs=21.3
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
-.++++|..++||||+|++|+|.
T Consensus 30 eiv~llG~NGaGKTTlLkti~Gl 52 (237)
T COG0410 30 EIVALLGRNGAGKTTLLKTIMGL 52 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999997
No 426
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.02 E-value=0.021 Score=53.20 Aligned_cols=23 Identities=13% Similarity=0.317 Sum_probs=21.8
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
..++++|..|||||||++.|.|.
T Consensus 26 g~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 26 GMYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred CcEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999997
No 427
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=95.01 E-value=0.031 Score=48.50 Aligned_cols=53 Identities=23% Similarity=0.330 Sum_probs=35.6
Q ss_pred HHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCC--CCCceEEEeccCCccCC
Q 012559 164 NMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDP--TGERTFGVLTKLDLMDK 218 (461)
Q Consensus 164 ~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~--~~~rti~VltK~D~~~~ 218 (461)
..+++.+.++| ++++|.|+.......+. .+.+.+.. .+.+.++|+||+|+.++
T Consensus 3 ~~~~~~i~~aD-~vl~ViD~~~p~~~~~~-~l~~~l~~~~~~k~~iivlNK~DL~~~ 57 (141)
T cd01857 3 RQLWRVVERSD-IVVQIVDARNPLLFRPP-DLERYVKEVDPRKKNILLLNKADLLTE 57 (141)
T ss_pred HHHHHHHhhCC-EEEEEEEccCCcccCCH-HHHHHHHhccCCCcEEEEEechhcCCH
Confidence 35678889999 56677777765544421 23333332 36899999999999754
No 428
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=95.00 E-value=0.12 Score=52.14 Aligned_cols=25 Identities=20% Similarity=0.446 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
.+|..+|.|--+||||||||.++..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 5799999999999999999999854
No 429
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.96 E-value=0.083 Score=51.52 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=35.3
Q ss_pred HHHHHHHhcCCCeEEEEEecC---CCccccHHHHHHHHHhCCCCCceEEEecc
Q 012559 163 ENMVRSYVEKPSCIILAISPA---NQDIATSDAIKLAREVDPTGERTFGVLTK 212 (461)
Q Consensus 163 ~~~v~~yi~~~~~iIL~V~~a---~~d~~~~~~l~l~~~~d~~~~rti~VltK 212 (461)
-.+++....+|. ||++..| -..-+++..+.+++.+...-.=||+.+|+
T Consensus 150 VaIARALa~~P~--iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITH 200 (339)
T COG1135 150 VAIARALANNPK--ILLCDEATSALDPETTQSILELLKDINRELGLTIVLITH 200 (339)
T ss_pred HHHHHHHhcCCC--EEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 567788888888 4444444 34555677888999998877889999996
No 430
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.95 E-value=0.024 Score=52.11 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=22.0
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~ 59 (461)
-.++++|..+||||||++.|.|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 27 AITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999974
No 431
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.94 E-value=0.024 Score=51.53 Aligned_cols=24 Identities=21% Similarity=0.505 Sum_probs=22.1
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~ 59 (461)
-.++++|..+||||||++.|+|..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 478999999999999999999973
No 432
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.94 E-value=0.024 Score=53.12 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++++|..+||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999983
No 433
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.94 E-value=0.018 Score=52.12 Aligned_cols=37 Identities=24% Similarity=0.397 Sum_probs=28.6
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCcccccc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRP 72 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p 72 (461)
--+++.|+.|+|||||+.+|....-+--+-+.+||.|
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~p 41 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKP 41 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCC
Confidence 3589999999999999999997753333445677776
No 434
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.93 E-value=0.025 Score=53.50 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++++|..+||||||++.|+|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999973
No 435
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.93 E-value=0.024 Score=52.49 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=21.9
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~ 59 (461)
-.++++|..+||||||++.|+|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999973
No 436
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.90 E-value=0.026 Score=51.28 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=22.1
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~ 59 (461)
-.++++|..+||||||++.|.|..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999983
No 437
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.89 E-value=0.025 Score=53.04 Aligned_cols=23 Identities=13% Similarity=0.335 Sum_probs=21.2
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
-.++++|..|||||||++.|.|.
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999997
No 438
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.88 E-value=0.03 Score=51.28 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=26.9
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCC-CCccCCCcccccc
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRD-FLPRGSGIVTRRP 72 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~-~lP~~~~~~Tr~p 72 (461)
..-|+++|.+|||||||++.|+... -+...-..+||.|
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~ 42 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAP 42 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCC
Confidence 3569999999999999999998752 0112224566665
No 439
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.88 E-value=0.022 Score=57.26 Aligned_cols=33 Identities=18% Similarity=0.431 Sum_probs=26.9
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccc
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 69 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~T 69 (461)
-..|+|+|.+||||||++++|++. +|.+..++|
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~--i~~~~rivt 194 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISA--IPPQERLIT 194 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcc--cCCCCCEEE
Confidence 367999999999999999999986 466555544
No 440
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.87 E-value=0.026 Score=52.58 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++++|..+||||||++.|+|..
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999973
No 441
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.86 E-value=0.026 Score=52.78 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=21.6
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
-.++++|..+||||||++.|.|.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999997
No 442
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.85 E-value=0.026 Score=52.62 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.++++|..+||||||++.|+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999997
No 443
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.84 E-value=0.027 Score=53.29 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.++++|..|||||||++.|+|.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999997
No 444
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.84 E-value=0.027 Score=52.42 Aligned_cols=22 Identities=18% Similarity=0.505 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.++++|..+||||||++.|+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999997
No 445
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.84 E-value=0.027 Score=52.76 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++++|..+||||||++.|+|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999973
No 446
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.83 E-value=0.028 Score=50.92 Aligned_cols=22 Identities=41% Similarity=0.649 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.++++|..+||||||++.|+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999999997
No 447
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.76 E-value=0.028 Score=52.38 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.++++|..+||||||++.|+|.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999997
No 448
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.75 E-value=0.028 Score=52.51 Aligned_cols=28 Identities=32% Similarity=0.545 Sum_probs=23.6
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG 66 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~ 66 (461)
.++++|..++|||||++.|+|. .|..+|
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~--~~~~~G 66 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGL--LHVESG 66 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC--CCCCCe
Confidence 6889999999999999999997 344445
No 449
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.75 E-value=0.029 Score=51.77 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=22.2
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~ 59 (461)
-.++++|..+||||||++.|.|..
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 578999999999999999999974
No 450
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.75 E-value=0.03 Score=51.75 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=21.6
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
-.++++|..++|||||++.|.|.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999997
No 451
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.73 E-value=0.028 Score=53.25 Aligned_cols=22 Identities=41% Similarity=0.598 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.++++|..+||||||++.|+|.
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999997
No 452
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.73 E-value=0.029 Score=52.58 Aligned_cols=23 Identities=39% Similarity=0.611 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++++|..|||||||++.|+|..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999973
No 453
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.73 E-value=0.03 Score=52.07 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.++++|..+||||||++.|+|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999997
No 454
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.72 E-value=0.03 Score=52.39 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.++++|..+||||||++.|+|.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999997
No 455
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.71 E-value=0.03 Score=51.98 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=24.5
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI 67 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~ 67 (461)
-.++|+|..++|||||++.|+|.. |..+|.
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~ 64 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFRFL--EAEEGK 64 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc--CCCCCe
Confidence 468999999999999999999973 444443
No 456
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.70 E-value=0.03 Score=52.74 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++|+|..+||||||++.|+|..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 58999999999999999999973
No 457
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=94.70 E-value=0.029 Score=53.39 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++++|..+||||||++.|+|..
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999999973
No 458
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.69 E-value=0.031 Score=51.77 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++|+|..+||||||++.|.|.-
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999973
No 459
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.69 E-value=0.029 Score=53.73 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=21.3
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
-.++++|..+|||||||.+|.|.
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 35899999999999999999997
No 460
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=94.67 E-value=0.03 Score=53.02 Aligned_cols=22 Identities=18% Similarity=0.451 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.++++|..|||||||+..|.|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 6899999999999999999997
No 461
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.66 E-value=0.034 Score=49.69 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.9
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~ 59 (461)
-.++++|..++|||||++.|.|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999984
No 462
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.66 E-value=0.034 Score=49.18 Aligned_cols=31 Identities=39% Similarity=0.517 Sum_probs=25.1
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCcc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV 68 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~ 68 (461)
..++++|..++|||||+++|.|.- |...|.+
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~--~~~~G~i 56 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL--KPTSGEI 56 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--CCCccEE
Confidence 578999999999999999999973 4444443
No 463
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.65 E-value=0.031 Score=42.25 Aligned_cols=21 Identities=38% Similarity=0.702 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHhhCC
Q 012559 38 VAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 38 IvVvG~~ssGKSSllnal~G~ 58 (461)
|++.|.++|||||+.++|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999865
No 464
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=94.63 E-value=0.051 Score=53.35 Aligned_cols=52 Identities=12% Similarity=0.281 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 163 ENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 163 ~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
...+.+.+..+| +||.|+|+...+..... .+.+.+. +.+.++|+||+|+.++
T Consensus 15 ~~~l~~~l~~aD-vIL~VvDar~p~~~~~~-~l~~~~~--~kp~iiVlNK~DL~~~ 66 (287)
T PRK09563 15 RREIKENLKLVD-VVIEVLDARIPLSSENP-MIDKIIG--NKPRLLILNKSDLADP 66 (287)
T ss_pred HHHHHHHhhhCC-EEEEEEECCCCCCCCCh-hHHHHhC--CCCEEEEEEchhcCCH
Confidence 345678889999 67788888765554332 2333332 6899999999999754
No 465
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.62 E-value=0.031 Score=53.05 Aligned_cols=29 Identities=34% Similarity=0.408 Sum_probs=24.0
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSG 66 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~ 66 (461)
-.++++|..+||||||++.|.|.. |-.+|
T Consensus 30 e~~~l~G~nGsGKSTLl~~i~G~~--~~~~G 58 (238)
T cd03249 30 KTVALVGSSGCGKSTVVSLLERFY--DPTSG 58 (238)
T ss_pred CEEEEEeCCCCCHHHHHHHHhccC--CCCCC
Confidence 368999999999999999999973 43444
No 466
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.60 E-value=0.05 Score=58.94 Aligned_cols=26 Identities=35% Similarity=0.604 Sum_probs=22.6
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCcc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPR 63 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~ 63 (461)
-.+++||..|||||||++.|+|.- |.
T Consensus 377 ~~vaIvG~SGsGKSTL~~lL~g~~--p~ 402 (588)
T PRK11174 377 QRIALVGPSGAGKTSLLNALLGFL--PY 402 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC--CC
Confidence 357999999999999999999973 64
No 467
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.60 E-value=0.033 Score=52.96 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++++|..+||||||++.|+|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999999973
No 468
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=94.59 E-value=0.034 Score=52.30 Aligned_cols=24 Identities=29% Similarity=0.529 Sum_probs=22.0
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~ 59 (461)
-.++++|..+||||||++.|+|..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 32 ETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999973
No 469
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=94.58 E-value=0.035 Score=51.91 Aligned_cols=31 Identities=19% Similarity=0.392 Sum_probs=24.8
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCcc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV 68 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~ 68 (461)
-.++++|..+||||||++.|+|.. |-.+|-+
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl~--~~~sG~i 44 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGLD--APDEGDF 44 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc--cCCCCCE
Confidence 358899999999999999999973 3344543
No 470
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=94.58 E-value=0.13 Score=42.71 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDF 60 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~ 60 (461)
.|+++|+.++||||++..+....|
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~~~ 25 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQFPF 25 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcCCc
Confidence 589999999999999999965544
No 471
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.58 E-value=0.036 Score=49.97 Aligned_cols=23 Identities=17% Similarity=0.443 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++++|..+||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 472
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=94.58 E-value=0.032 Score=55.26 Aligned_cols=29 Identities=24% Similarity=0.398 Sum_probs=24.2
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCc
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGI 67 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~ 67 (461)
.++++|..+||||||++.|+|.. |..+|.
T Consensus 35 ~v~iiG~nGsGKSTLl~~L~Gl~--~p~~G~ 63 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNALL--LPDTGT 63 (305)
T ss_pred EEEEECCCCCcHHHHHHHHhCCC--CCCCcE
Confidence 69999999999999999999973 434443
No 473
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.57 E-value=0.026 Score=50.96 Aligned_cols=25 Identities=20% Similarity=0.484 Sum_probs=23.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
..|.++|+|..|||||||+++|.+.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 5689999999999999999999976
No 474
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.56 E-value=0.034 Score=52.96 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.++++|..+||||||++.|+|.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999997
No 475
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=94.55 E-value=0.032 Score=50.26 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=17.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
..+-++|.|.+|+|||+|++++...
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4588999999999999999998854
No 476
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.55 E-value=0.037 Score=49.53 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.++|+|..+||||||++.|.|.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999997
No 477
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=94.55 E-value=0.034 Score=53.00 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.9
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~ 59 (461)
-.++++|..+||||||++.|+|..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 29 ETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999973
No 478
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=94.55 E-value=0.035 Score=52.86 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.5
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
-.++++|..+||||||++.|.|.
T Consensus 30 e~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 30 EIVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999997
No 479
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.54 E-value=0.035 Score=53.51 Aligned_cols=31 Identities=29% Similarity=0.476 Sum_probs=25.3
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCcc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV 68 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~ 68 (461)
-.++|+|..+||||||++.|+|. ++-.+|.+
T Consensus 27 e~~~IvG~nGsGKSTLlk~l~Gl--~~p~~G~I 57 (255)
T cd03236 27 QVLGLVGPNGIGKSTALKILAGK--LKPNLGKF 57 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--cCCCCceE
Confidence 47999999999999999999998 34444544
No 480
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=94.54 E-value=0.035 Score=51.98 Aligned_cols=24 Identities=46% Similarity=0.625 Sum_probs=21.9
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~ 59 (461)
-.++++|..+||||||++.|.|..
T Consensus 32 ~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 32 EIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999973
No 481
>PRK01889 GTPase RsgA; Reviewed
Probab=94.53 E-value=0.041 Score=55.76 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=32.5
Q ss_pred hcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 170 VEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 170 i~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
+.+.|. +++|++++.++.....-+++..+...+.+.++|+||+|++++
T Consensus 110 aANvD~-vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~ 157 (356)
T PRK01889 110 AANVDT-VFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCED 157 (356)
T ss_pred EEeCCE-EEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCC
Confidence 356674 667777776666544444444444457788999999999865
No 482
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.53 E-value=0.035 Score=51.69 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++++|..+||||||++.|+|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999973
No 483
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=94.52 E-value=0.44 Score=47.51 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCC
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.|..++-|-=|||||||||.|+...
T Consensus 1 ipVtvitGFLGsGKTTlL~~lL~~~ 25 (323)
T COG0523 1 IPVTVITGFLGSGKTTLLNHLLANR 25 (323)
T ss_pred CCEEEEeecCCCCHHHHHHHHHhcc
Confidence 4888999999999999999999763
No 484
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.52 E-value=0.037 Score=51.46 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=21.8
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~ 59 (461)
-.++++|..+||||||++.|.|..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 29 EALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999999973
No 485
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.52 E-value=0.037 Score=51.16 Aligned_cols=28 Identities=29% Similarity=0.617 Sum_probs=23.7
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRG 64 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~ 64 (461)
-..+|+|..++||||||.+|+|. +.|.+
T Consensus 28 ev~ailGPNGAGKSTlLk~LsGe-l~p~~ 55 (259)
T COG4559 28 EVLAILGPNGAGKSTLLKALSGE-LSPDS 55 (259)
T ss_pred cEEEEECCCCccHHHHHHHhhCc-cCCCC
Confidence 35899999999999999999998 44544
No 486
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=94.52 E-value=0.035 Score=51.53 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=21.7
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~ 59 (461)
-.++|+|..+||||||++.|.|..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 27 EIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 358899999999999999999973
No 487
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.51 E-value=0.035 Score=52.61 Aligned_cols=24 Identities=38% Similarity=0.465 Sum_probs=21.8
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~ 59 (461)
-.++|+|..+||||||++.|.|..
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 28 KKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 368999999999999999999973
No 488
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.51 E-value=0.036 Score=51.63 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++++|..+||||||++.|.|..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 68999999999999999999973
No 489
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.50 E-value=0.029 Score=46.98 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.|+|+|.++|||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 490
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.49 E-value=0.037 Score=49.86 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=21.9
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~ 59 (461)
-.++++|..++|||||++.|.|..
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 368999999999999999999973
No 491
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.48 E-value=0.14 Score=53.60 Aligned_cols=57 Identities=16% Similarity=0.331 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhC-CCCCceE-EEeccCCccCC
Q 012559 160 EDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVD-PTGERTF-GVLTKLDLMDK 218 (461)
Q Consensus 160 ~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d-~~~~rti-~VltK~D~~~~ 218 (461)
++--.+++..++++. |++...|+..+-......+.+.+- ..+.||+ .|+-..|++..
T Consensus 493 kQrvslaRa~lKda~--Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~ 551 (591)
T KOG0057|consen 493 KQRVSLARAFLKDAP--ILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKD 551 (591)
T ss_pred HHHHHHHHHHhcCCC--eEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhc
Confidence 444678899999988 666677765444433333444332 2445554 46666676643
No 492
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=94.48 E-value=0.031 Score=52.60 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.8
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~ 59 (461)
-.++++|..+||||||++.|.|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 27 EITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 368999999999999999999973
No 493
>PRK10908 cell division protein FtsE; Provisional
Probab=94.48 E-value=0.036 Score=52.04 Aligned_cols=29 Identities=24% Similarity=0.453 Sum_probs=24.0
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSG 66 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~ 66 (461)
-.++++|..+||||||++.|.|.. |..+|
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 57 (222)
T PRK10908 29 EMAFLTGHSGAGKSTLLKLICGIE--RPSAG 57 (222)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--CCCce
Confidence 468899999999999999999973 43444
No 494
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=94.46 E-value=0.036 Score=53.71 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.++++|..+||||||++.|+|.
T Consensus 41 ~~~i~G~NGsGKSTLl~~l~Gl 62 (267)
T PRK15112 41 TLAIIGENGSGKSTLAKMLAGM 62 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 6889999999999999999997
No 495
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.46 E-value=0.038 Score=52.18 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.9
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~ 59 (461)
-.++++|..+||||||++.|.|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 27 EVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 369999999999999999999973
No 496
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=94.46 E-value=0.036 Score=52.61 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++++|..+||||||++.|+|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68899999999999999999973
No 497
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=94.46 E-value=0.037 Score=53.28 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++|+|..+||||||++.|+|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999973
No 498
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=94.46 E-value=0.15 Score=46.55 Aligned_cols=55 Identities=18% Similarity=0.095 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 161 DIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 161 ~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
.++.++..|+++++ +|++|+|+...... ....+... ..+.++++|+||+|+.++.
T Consensus 23 ~~~~~l~~~~~~ad-~il~VvD~~~~~~~-~~~~l~~~--~~~~~~ilV~NK~Dl~~~~ 77 (190)
T cd01855 23 FILNLLSSISPKKA-LVVHVVDIFDFPGS-LIPRLRLF--GGNNPVILVGNKIDLLPKD 77 (190)
T ss_pred HHHHHHHhcccCCc-EEEEEEECccCCCc-cchhHHHh--cCCCcEEEEEEchhcCCCC
Confidence 35888999999998 46666666532211 11112111 2367999999999998543
No 499
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.44 E-value=0.039 Score=51.10 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=22.1
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~ 59 (461)
-.++++|..+||||||++.|+|..
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 28 ELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999973
No 500
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.40 E-value=0.04 Score=51.43 Aligned_cols=24 Identities=25% Similarity=0.571 Sum_probs=22.3
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~ 59 (461)
-.++|+|..+||||||++.|.|.-
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCC
Confidence 678999999999999999999973
Done!