Query 012559
Match_columns 461
No_of_seqs 331 out of 2952
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 11:48:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012559.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012559hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zvr_A Dynamin-1; hydrolase, D 100.0 1.6E-75 5.4E-80 629.8 43.2 446 3-459 25-478 (772)
2 3szr_A Interferon-induced GTP- 100.0 1.6E-61 5.5E-66 518.1 38.6 438 13-459 29-479 (608)
3 3t34_A Dynamin-related protein 100.0 2.8E-52 9.6E-57 421.0 28.6 329 4-332 1-332 (360)
4 2x2e_A Dynamin-1; nitration, h 100.0 1E-49 3.4E-54 401.2 35.5 338 3-348 5-344 (353)
5 1jwy_B Dynamin A GTPase domain 100.0 2E-41 6.9E-46 335.0 28.9 309 5-320 1-315 (315)
6 2aka_B Dynamin-1; fusion prote 100.0 6.6E-40 2.3E-44 321.4 33.6 298 4-309 1-298 (299)
7 2j69_A Bacterial dynamin-like 99.8 3.4E-18 1.2E-22 185.4 24.6 172 34-218 68-245 (695)
8 3iev_A GTP-binding protein ERA 99.8 4.2E-19 1.5E-23 174.6 9.6 241 33-335 8-255 (308)
9 1wf3_A GTP-binding protein; GT 99.8 1.2E-18 4.1E-23 170.7 11.4 234 34-336 6-246 (301)
10 3ljb_A Interferon-induced GTP- 99.7 4.5E-18 1.5E-22 161.7 8.8 129 328-458 3-138 (271)
11 1ega_A Protein (GTP-binding pr 99.7 9.9E-18 3.4E-22 164.3 4.5 204 34-305 7-216 (301)
12 2xtp_A GTPase IMAP family memb 99.6 3.9E-15 1.3E-19 142.3 9.4 126 34-217 21-153 (260)
13 3iby_A Ferrous iron transport 99.6 2.6E-15 8.9E-20 143.6 7.1 123 35-219 1-126 (256)
14 4dhe_A Probable GTP-binding pr 99.5 1.8E-14 6E-19 133.9 10.0 129 34-219 28-160 (223)
15 3lxw_A GTPase IMAP family memb 99.5 4.8E-14 1.6E-18 134.0 10.2 127 34-217 20-153 (247)
16 3pqc_A Probable GTP-binding pr 99.5 1.3E-13 4.5E-18 124.6 12.6 126 33-219 21-149 (195)
17 1mky_A Probable GTP-binding pr 99.5 2.4E-14 8.3E-19 147.5 8.3 162 35-260 1-165 (439)
18 1xzp_A Probable tRNA modificat 99.5 1E-13 3.4E-18 143.9 11.5 156 36-257 244-401 (482)
19 3gee_A MNME, tRNA modification 99.5 3.3E-14 1.1E-18 147.4 6.9 123 36-219 234-359 (476)
20 1svi_A GTP-binding protein YSX 99.5 1.5E-13 5.3E-18 124.6 10.6 126 34-219 22-150 (195)
21 3lxx_A GTPase IMAP family memb 99.5 5.6E-14 1.9E-18 132.6 7.8 128 34-219 28-161 (239)
22 1kao_A RAP2A; GTP-binding prot 99.5 2.4E-13 8.3E-18 119.3 11.2 116 36-218 4-123 (167)
23 3t5d_A Septin-7; GTP-binding p 99.5 2.5E-13 8.6E-18 131.0 12.0 137 36-219 9-160 (274)
24 3i8s_A Ferrous iron transport 99.5 4.3E-14 1.5E-18 136.4 6.4 122 35-218 3-127 (274)
25 3geh_A MNME, tRNA modification 99.5 4.3E-14 1.5E-18 146.0 6.7 154 36-255 225-378 (462)
26 2qu8_A Putative nucleolar GTP- 99.5 2.3E-13 7.9E-18 127.3 11.1 134 27-219 21-158 (228)
27 2hjg_A GTP-binding protein ENG 99.5 1.5E-13 5E-18 141.5 10.4 124 35-218 3-126 (436)
28 4dcu_A GTP-binding protein ENG 99.5 1.2E-13 4.2E-18 142.9 9.8 126 33-218 21-146 (456)
29 3tkl_A RAS-related protein RAB 99.5 2.5E-13 8.7E-18 123.1 10.7 156 34-255 15-173 (196)
30 3a1s_A Iron(II) transport prot 99.5 9.2E-14 3.1E-18 133.0 8.1 119 34-218 4-125 (258)
31 2dyk_A GTP-binding protein; GT 99.4 1.3E-13 4.5E-18 120.7 8.4 122 35-218 1-123 (161)
32 3bc1_A RAS-related protein RAB 99.4 1.5E-13 5.2E-18 124.0 8.7 69 136-218 70-142 (195)
33 1u8z_A RAS-related protein RAL 99.4 2.2E-13 7.6E-18 119.7 9.4 118 34-218 3-124 (168)
34 2a9k_A RAS-related protein RAL 99.4 4.7E-13 1.6E-17 120.0 11.5 118 34-218 17-138 (187)
35 1zbd_A Rabphilin-3A; G protein 99.4 2.2E-13 7.6E-18 124.5 9.5 119 34-218 7-128 (203)
36 2qpt_A EH domain-containing pr 99.4 1.7E-13 5.9E-18 144.6 9.8 165 34-219 64-234 (550)
37 3clv_A RAB5 protein, putative; 99.4 2.9E-13 9.8E-18 123.0 9.8 65 136-214 93-158 (208)
38 3b1v_A Ferrous iron uptake tra 99.4 2.2E-13 7.4E-18 131.3 9.5 118 35-218 3-122 (272)
39 3q72_A GTP-binding protein RAD 99.4 1.6E-13 5.6E-18 120.8 7.9 117 35-219 2-122 (166)
40 3tw8_B RAS-related protein RAB 99.4 5.4E-14 1.9E-18 125.5 4.8 119 34-218 8-128 (181)
41 2oil_A CATX-8, RAS-related pro 99.4 2.2E-13 7.6E-18 123.5 8.9 119 34-218 24-145 (193)
42 1z08_A RAS-related protein RAB 99.4 1.5E-13 5.3E-18 121.4 7.2 119 34-218 5-126 (170)
43 2bov_A RAla, RAS-related prote 99.4 3.2E-13 1.1E-17 123.5 9.4 118 34-218 13-134 (206)
44 1g16_A RAS-related protein SEC 99.4 1.6E-13 5.4E-18 121.2 7.1 116 35-217 3-122 (170)
45 2lkc_A Translation initiation 99.4 2.9E-13 9.8E-18 120.7 8.7 117 33-218 6-122 (178)
46 2fn4_A P23, RAS-related protei 99.4 2.4E-13 8.3E-18 121.2 8.3 118 34-218 8-129 (181)
47 1z0f_A RAB14, member RAS oncog 99.4 3.8E-13 1.3E-17 119.7 9.5 120 34-219 14-136 (179)
48 1wms_A RAB-9, RAB9, RAS-relate 99.4 3.2E-13 1.1E-17 120.2 9.0 119 34-218 6-131 (177)
49 2bme_A RAB4A, RAS-related prot 99.4 3E-13 1E-17 121.6 8.8 119 34-218 9-130 (186)
50 2nzj_A GTP-binding protein REM 99.4 3.1E-13 1.1E-17 120.0 8.6 120 34-218 3-126 (175)
51 4bas_A ADP-ribosylation factor 99.4 4.4E-13 1.5E-17 121.8 9.7 118 33-219 15-143 (199)
52 1r8s_A ADP-ribosylation factor 99.4 8E-13 2.7E-17 116.1 11.0 111 37-218 2-116 (164)
53 4djt_A GTP-binding nuclear pro 99.4 1.4E-13 4.7E-18 127.5 6.3 110 136-259 61-173 (218)
54 2g6b_A RAS-related protein RAB 99.4 4E-13 1.4E-17 119.9 9.1 121 34-219 9-132 (180)
55 2il1_A RAB12; G-protein, GDP, 99.4 5.1E-13 1.8E-17 121.3 10.0 119 34-218 25-146 (192)
56 2fg5_A RAB-22B, RAS-related pr 99.4 2.4E-13 8.4E-18 123.4 7.5 119 34-218 22-143 (192)
57 1z0j_A RAB-22, RAS-related pro 99.4 4.2E-13 1.4E-17 118.4 8.7 120 34-219 5-127 (170)
58 1x3s_A RAS-related protein RAB 99.4 4.9E-13 1.7E-17 121.0 9.3 119 34-218 14-136 (195)
59 2f7s_A C25KG, RAS-related prot 99.4 1.7E-13 5.9E-18 126.7 6.4 69 136-218 84-156 (217)
60 2gf9_A RAS-related protein RAB 99.4 2E-13 6.8E-18 123.5 6.5 119 34-218 21-142 (189)
61 2erx_A GTP-binding protein DI- 99.4 3.5E-13 1.2E-17 119.0 8.0 70 136-219 51-125 (172)
62 1c1y_A RAS-related protein RAP 99.4 4.4E-13 1.5E-17 117.9 8.6 116 36-218 4-123 (167)
63 2efe_B Small GTP-binding prote 99.4 3.4E-13 1.2E-17 120.5 7.9 120 34-219 11-133 (181)
64 1z2a_A RAS-related protein RAB 99.4 1.2E-13 4.1E-18 121.7 4.8 118 34-218 4-124 (168)
65 2ce2_X GTPase HRAS; signaling 99.4 5.4E-13 1.9E-17 116.8 9.0 116 36-218 4-123 (166)
66 3cph_A RAS-related protein SEC 99.4 4.6E-13 1.6E-17 123.2 8.9 118 34-217 19-139 (213)
67 1ek0_A Protein (GTP-binding pr 99.4 3.6E-13 1.2E-17 118.7 7.9 117 36-218 4-123 (170)
68 4dsu_A GTPase KRAS, isoform 2B 99.4 5.2E-13 1.8E-17 120.1 9.0 117 36-219 5-125 (189)
69 2hxs_A RAB-26, RAS-related pro 99.4 1.6E-13 5.3E-18 122.4 5.3 120 34-218 5-130 (178)
70 2y8e_A RAB-protein 6, GH09086P 99.4 9.5E-14 3.2E-18 123.7 3.7 119 35-219 14-135 (179)
71 2ew1_A RAS-related protein RAB 99.4 7.4E-13 2.5E-17 121.6 9.6 119 34-218 25-146 (201)
72 2bcg_Y Protein YP2, GTP-bindin 99.4 4.5E-13 1.5E-17 122.9 8.0 119 34-218 7-128 (206)
73 1z06_A RAS-related protein RAB 99.4 3.8E-13 1.3E-17 121.6 7.4 119 34-218 19-142 (189)
74 1upt_A ARL1, ADP-ribosylation 99.4 6.5E-13 2.2E-17 117.4 8.7 115 34-219 6-124 (171)
75 3oes_A GTPase rhebl1; small GT 99.4 2.2E-13 7.6E-18 124.6 5.8 119 34-219 23-145 (201)
76 1ky3_A GTP-binding protein YPT 99.4 4.5E-13 1.6E-17 119.6 7.6 120 34-218 7-133 (182)
77 2cxx_A Probable GTP-binding pr 99.4 1.5E-12 5.1E-17 117.3 11.0 124 35-219 1-138 (190)
78 3kkq_A RAS-related protein M-R 99.4 6.4E-13 2.2E-17 119.2 8.5 118 34-218 17-138 (183)
79 3q85_A GTP-binding protein REM 99.4 2.6E-13 8.9E-18 119.9 5.8 26 35-60 2-27 (169)
80 2wji_A Ferrous iron transport 99.4 7.1E-13 2.4E-17 117.4 8.6 117 36-217 4-122 (165)
81 3k53_A Ferrous iron transport 99.4 2E-13 6.8E-18 131.5 5.2 118 34-217 2-123 (271)
82 2a5j_A RAS-related protein RAB 99.4 6.8E-13 2.3E-17 120.3 8.5 119 34-218 20-141 (191)
83 3dz8_A RAS-related protein RAB 99.4 2.1E-13 7.1E-18 123.7 4.9 119 34-218 22-143 (191)
84 1vg8_A RAS-related protein RAB 99.4 3.6E-13 1.2E-17 123.3 6.6 118 34-218 7-132 (207)
85 2qtf_A Protein HFLX, GTP-bindi 99.4 4.4E-12 1.5E-16 127.1 14.7 126 34-219 178-308 (364)
86 1ksh_A ARF-like protein 2; sma 99.4 1E-12 3.5E-17 118.3 9.1 115 34-219 17-135 (186)
87 2hup_A RAS-related protein RAB 99.4 1.7E-12 5.8E-17 118.9 10.7 119 34-218 28-149 (201)
88 2h57_A ADP-ribosylation factor 99.4 3.8E-13 1.3E-17 121.7 6.2 116 34-218 20-141 (190)
89 2hjg_A GTP-binding protein ENG 99.4 7.5E-13 2.5E-17 136.2 8.9 128 34-219 174-302 (436)
90 4dcu_A GTP-binding protein ENG 99.4 6.6E-13 2.3E-17 137.4 8.4 129 34-219 194-322 (456)
91 1zj6_A ADP-ribosylation factor 99.4 9.6E-13 3.3E-17 118.8 8.3 114 34-218 15-132 (187)
92 3con_A GTPase NRAS; structural 99.4 2.1E-12 7.1E-17 116.6 10.3 118 34-218 20-141 (190)
93 1r2q_A RAS-related protein RAB 99.4 6.7E-13 2.3E-17 117.0 6.8 119 34-218 5-126 (170)
94 2o52_A RAS-related protein RAB 99.4 5.1E-13 1.7E-17 122.3 6.2 119 34-218 24-145 (200)
95 2gj8_A MNME, tRNA modification 99.4 8.9E-12 3E-16 111.2 13.9 123 36-218 5-130 (172)
96 3t5g_A GTP-binding protein RHE 99.3 7E-13 2.4E-17 118.7 6.5 119 34-219 5-127 (181)
97 2p5s_A RAS and EF-hand domain 99.3 1.2E-12 4.2E-17 119.4 8.2 118 34-217 27-147 (199)
98 1zd9_A ADP-ribosylation factor 99.3 1.1E-11 3.7E-16 112.0 14.3 115 34-218 21-139 (188)
99 2fu5_C RAS-related protein RAB 99.3 1.3E-13 4.5E-18 123.7 1.5 119 34-218 7-128 (183)
100 1lnz_A SPO0B-associated GTP-bi 99.3 1.4E-13 4.9E-18 136.7 1.6 125 35-219 158-290 (342)
101 3llu_A RAS-related GTP-binding 99.3 5.9E-12 2E-16 114.7 11.2 120 33-218 18-144 (196)
102 2yc2_C IFT27, small RAB-relate 99.3 5.3E-13 1.8E-17 122.1 4.0 68 136-217 73-146 (208)
103 1moz_A ARL1, ADP-ribosylation 99.3 2.6E-12 8.8E-17 115.1 8.4 114 34-218 17-134 (183)
104 2atv_A RERG, RAS-like estrogen 99.3 2.2E-12 7.6E-17 117.3 8.0 117 34-218 27-147 (196)
105 2x77_A ADP-ribosylation factor 99.3 1.1E-12 3.7E-17 118.5 5.6 114 34-218 21-138 (189)
106 2h17_A ADP-ribosylation factor 99.3 8.7E-12 3E-16 111.9 11.3 114 34-218 20-137 (181)
107 1h65_A Chloroplast outer envel 99.3 8.2E-12 2.8E-16 120.0 11.8 125 34-219 38-170 (270)
108 3t1o_A Gliding protein MGLA; G 99.3 3.4E-12 1.2E-16 115.4 8.2 69 136-218 74-150 (198)
109 2wjg_A FEOB, ferrous iron tran 99.3 3E-12 1E-16 115.2 7.7 120 34-218 6-127 (188)
110 2b6h_A ADP-ribosylation factor 99.3 1.9E-12 6.4E-17 117.7 6.4 114 34-218 28-145 (192)
111 3c5c_A RAS-like protein 12; GD 99.3 2.4E-12 8.3E-17 116.4 7.0 27 34-60 20-46 (187)
112 3cpj_B GTP-binding protein YPT 99.3 1.1E-12 3.8E-17 122.1 4.9 119 34-218 12-133 (223)
113 3qq5_A Small GTP-binding prote 99.3 5.2E-12 1.8E-16 128.8 10.1 161 34-258 33-193 (423)
114 2gf0_A GTP-binding protein DI- 99.3 2.8E-12 9.5E-17 116.5 7.2 118 34-218 7-129 (199)
115 3cbq_A GTP-binding protein REM 99.3 4.4E-12 1.5E-16 115.7 8.3 70 136-218 72-145 (195)
116 1fzq_A ADP-ribosylation factor 99.3 9.9E-12 3.4E-16 111.8 10.4 115 34-219 15-133 (181)
117 2fh5_B SR-beta, signal recogni 99.3 9.6E-12 3.3E-16 114.6 10.5 118 34-219 6-131 (214)
118 2ged_A SR-beta, signal recogni 99.3 4.7E-12 1.6E-16 114.6 8.0 118 34-219 47-172 (193)
119 2e87_A Hypothetical protein PH 99.3 2.8E-11 9.7E-16 121.1 14.0 124 34-218 166-295 (357)
120 3def_A T7I23.11 protein; chlor 99.3 2.9E-11 1E-15 115.7 13.4 124 34-218 35-166 (262)
121 2q3h_A RAS homolog gene family 99.3 2.5E-12 8.6E-17 117.3 5.7 117 34-218 19-139 (201)
122 2atx_A Small GTP binding prote 99.3 3.6E-12 1.2E-16 115.5 6.4 117 34-218 17-137 (194)
123 3reg_A RHO-like small GTPase; 99.3 1.9E-12 6.6E-17 117.5 4.1 117 34-218 22-142 (194)
124 4dkx_A RAS-related protein RAB 99.3 4.4E-12 1.5E-16 118.0 6.6 146 37-251 15-166 (216)
125 1mh1_A RAC1; GTP-binding, GTPa 99.3 2.3E-12 7.7E-17 115.5 4.5 117 34-218 4-124 (186)
126 1f6b_A SAR1; gtpases, N-termin 99.3 7.1E-12 2.4E-16 114.5 7.9 113 34-217 24-140 (198)
127 3l0i_B RAS-related protein RAB 99.3 2.2E-13 7.5E-18 124.5 -2.3 119 34-218 32-153 (199)
128 3gj0_A GTP-binding nuclear pro 99.3 7.5E-13 2.6E-17 123.0 1.3 69 136-219 64-135 (221)
129 1m2o_B GTP-binding protein SAR 99.3 1.2E-11 4E-16 112.3 8.9 113 34-217 22-138 (190)
130 2gco_A H9, RHO-related GTP-bin 99.3 3.5E-12 1.2E-16 116.6 5.4 116 35-218 25-144 (201)
131 2fv8_A H6, RHO-related GTP-bin 99.2 2.1E-12 7.2E-17 118.7 3.8 116 35-218 25-144 (207)
132 2j1l_A RHO-related GTP-binding 99.2 4.7E-12 1.6E-16 117.2 6.0 118 34-219 33-154 (214)
133 4a9a_A Ribosome-interacting GT 99.2 6.7E-12 2.3E-16 125.7 7.4 122 34-216 71-195 (376)
134 3bwd_D RAC-like GTP-binding pr 99.2 1.9E-12 6.6E-17 115.7 2.8 117 34-218 7-127 (182)
135 1nrj_B SR-beta, signal recogni 99.2 4.8E-11 1.7E-15 110.2 11.9 114 34-219 11-136 (218)
136 2j0v_A RAC-like GTP-binding pr 99.2 2.6E-12 8.8E-17 118.3 3.1 117 34-218 8-128 (212)
137 3th5_A RAS-related C3 botulinu 98.8 1.4E-12 4.8E-17 119.5 0.0 118 34-218 29-149 (204)
138 1wxq_A GTP-binding protein; st 99.2 1E-12 3.5E-17 133.2 -1.2 38 37-74 2-39 (397)
139 2iwr_A Centaurin gamma 1; ANK 99.2 4.6E-11 1.6E-15 106.4 9.8 27 34-60 6-32 (178)
140 3q3j_B RHO-related GTP-binding 99.2 7.6E-12 2.6E-16 115.8 4.5 117 34-218 26-146 (214)
141 4gzl_A RAS-related C3 botulinu 99.2 4.5E-12 1.6E-16 116.3 2.9 118 34-219 29-150 (204)
142 1mky_A Probable GTP-binding pr 99.2 5.1E-11 1.8E-15 122.6 11.0 129 34-219 179-308 (439)
143 3ihw_A Centg3; RAS, centaurin, 99.2 3.7E-11 1.3E-15 108.4 8.8 28 33-60 18-45 (184)
144 3dpu_A RAB family protein; roc 99.2 2.7E-11 9.2E-16 127.8 9.0 110 135-259 97-206 (535)
145 3r7w_A Gtpase1, GTP-binding pr 99.2 4.3E-11 1.5E-15 117.3 8.7 74 135-217 51-129 (307)
146 3izy_P Translation initiation 99.2 7.3E-12 2.5E-16 131.1 3.3 117 34-218 3-119 (537)
147 1m7b_A RND3/RHOE small GTP-bin 99.2 1.4E-11 4.7E-16 110.9 4.7 117 34-218 6-126 (184)
148 3lvq_E ARF-GAP with SH3 domain 99.2 2.4E-10 8.3E-15 119.3 14.4 113 35-218 322-438 (497)
149 3o47_A ADP-ribosylation factor 99.2 3.6E-11 1.2E-15 119.0 7.6 112 37-219 167-282 (329)
150 1gwn_A RHO-related GTP-binding 99.1 2.3E-11 7.9E-16 111.9 5.1 117 34-218 27-147 (205)
151 2g3y_A GTP-binding protein GEM 99.1 7.7E-11 2.6E-15 109.1 8.6 27 34-60 36-62 (211)
152 3sjy_A Translation initiation 99.1 1.2E-10 4.1E-15 118.5 9.5 68 136-219 75-145 (403)
153 3tr5_A RF-3, peptide chain rel 99.1 1.1E-10 3.6E-15 122.5 8.9 138 34-218 12-149 (528)
154 1wb1_A Translation elongation 99.1 7.3E-11 2.5E-15 122.7 7.5 66 136-218 73-140 (482)
155 3j2k_7 ERF3, eukaryotic polype 99.1 2E-10 6.8E-15 118.1 10.6 144 34-217 16-169 (439)
156 2wkq_A NPH1-1, RAS-related C3 99.1 8.8E-11 3E-15 115.5 7.6 117 34-218 154-274 (332)
157 2qag_A Septin-2, protein NEDD5 99.1 8.2E-11 2.8E-15 117.9 6.2 82 136-219 95-190 (361)
158 2zej_A Dardarin, leucine-rich 99.1 4.5E-11 1.5E-15 107.6 3.2 23 36-58 3-25 (184)
159 3izq_1 HBS1P, elongation facto 99.1 3.8E-10 1.3E-14 120.4 10.8 146 34-217 166-319 (611)
160 2ywe_A GTP-binding protein LEP 99.0 2.7E-10 9.1E-15 120.8 9.0 134 34-218 5-140 (600)
161 2www_A Methylmalonic aciduria 99.0 1.3E-09 4.3E-14 108.7 13.1 25 34-58 73-97 (349)
162 3p26_A Elongation factor 1 alp 99.0 2.8E-10 9.5E-15 118.5 8.4 146 34-218 32-186 (483)
163 3cb4_D GTP-binding protein LEP 99.0 2.6E-10 9E-15 121.0 7.8 134 34-218 3-138 (599)
164 2f9l_A RAB11B, member RAS onco 99.0 4.4E-10 1.5E-14 102.4 8.2 119 34-218 4-125 (199)
165 2cjw_A GTP-binding protein GEM 99.0 4.8E-10 1.6E-14 101.8 7.6 25 34-58 5-29 (192)
166 2h5e_A Peptide chain release f 99.0 6.4E-10 2.2E-14 116.7 9.0 69 135-218 81-149 (529)
167 1g7s_A Translation initiation 99.0 1.6E-10 5.5E-15 122.7 4.1 133 34-217 4-136 (594)
168 1zun_B Sulfate adenylate trans 99.0 2.3E-09 8E-14 110.0 12.6 67 135-218 103-172 (434)
169 2elf_A Protein translation elo 99.0 5.7E-10 1.9E-14 112.0 7.6 62 136-215 60-125 (370)
170 1zo1_I IF2, translation initia 99.0 1.4E-10 4.8E-15 120.4 3.1 113 34-217 3-117 (501)
171 2c78_A Elongation factor TU-A; 99.0 1.3E-09 4.4E-14 110.9 9.9 68 135-217 74-142 (405)
172 1kk1_A EIF2gamma; initiation o 99.0 1.4E-09 4.7E-14 110.9 9.7 67 136-218 83-152 (410)
173 3p32_A Probable GTPase RV1496/ 99.0 5E-09 1.7E-13 104.7 13.5 24 34-57 78-101 (355)
174 2xex_A Elongation factor G; GT 98.9 4.1E-10 1.4E-14 122.0 5.5 69 135-218 74-142 (693)
175 1pui_A ENGB, probable GTP-bind 98.9 4.6E-09 1.6E-13 96.1 11.7 78 137-219 73-153 (210)
176 1oix_A RAS-related protein RAB 98.9 9.9E-10 3.4E-14 99.5 7.0 27 34-60 28-54 (191)
177 1s0u_A EIF-2-gamma, translatio 98.9 3.1E-09 1E-13 108.2 11.3 68 136-219 81-151 (408)
178 1f60_A Elongation factor EEF1A 98.9 3.8E-09 1.3E-13 109.1 10.8 143 34-217 6-159 (458)
179 1dar_A EF-G, elongation factor 98.9 1.6E-09 5.3E-14 117.4 6.2 69 135-218 76-144 (691)
180 1d2e_A Elongation factor TU (E 98.8 4.1E-09 1.4E-13 106.8 8.4 66 135-217 65-133 (397)
181 2rdo_7 EF-G, elongation factor 98.8 1.5E-08 5.2E-13 109.8 13.1 136 34-218 9-149 (704)
182 2qag_B Septin-6, protein NEDD5 98.8 5.9E-09 2E-13 105.7 8.6 82 136-219 95-192 (427)
183 1jny_A EF-1-alpha, elongation 98.8 5.5E-09 1.9E-13 107.2 7.6 67 135-218 83-159 (435)
184 3c5h_A Glucocorticoid receptor 98.8 3.3E-09 1.1E-13 100.9 5.2 26 33-58 17-51 (255)
185 2qag_C Septin-7; cell cycle, c 98.8 2.2E-08 7.4E-13 101.8 11.4 82 136-219 88-183 (418)
186 1udx_A The GTP-binding protein 98.8 1.1E-08 3.6E-13 104.0 9.1 25 35-59 157-181 (416)
187 1n0u_A EF-2, elongation factor 98.8 4.2E-09 1.4E-13 116.5 6.4 67 135-216 97-163 (842)
188 3mca_A HBS1, elongation factor 98.8 3.9E-10 1.3E-14 120.0 -1.8 65 136-217 255-329 (592)
189 2p67_A LAO/AO transport system 98.8 5.2E-08 1.8E-12 96.7 12.9 25 34-58 55-79 (341)
190 1jal_A YCHF protein; nucleotid 98.8 6.9E-09 2.4E-13 103.3 6.5 38 36-73 3-40 (363)
191 3vqt_A RF-3, peptide chain rel 98.8 1.5E-08 5E-13 106.8 9.3 135 34-217 30-166 (548)
192 3ec1_A YQEH GTPase; atnos1, at 98.8 1.6E-09 5.5E-14 108.7 1.9 23 36-58 163-185 (369)
193 3h2y_A GTPase family protein; 98.7 3.3E-09 1.1E-13 106.4 2.9 24 36-59 161-184 (368)
194 2qnr_A Septin-2, protein NEDD5 98.7 2.3E-08 7.9E-13 97.5 7.5 137 36-218 19-170 (301)
195 4fn5_A EF-G 1, elongation fact 98.7 2.1E-08 7.1E-13 109.1 7.6 136 34-217 12-151 (709)
196 2qm8_A GTPase/ATPase; G protei 98.7 1.9E-07 6.5E-12 92.4 13.7 25 34-58 54-78 (337)
197 3j25_A Tetracycline resistance 98.7 8E-09 2.7E-13 110.9 3.4 133 35-218 2-134 (638)
198 3avx_A Elongation factor TS, e 98.6 2E-08 6.8E-13 112.0 6.5 67 134-217 357-426 (1289)
199 1r5b_A Eukaryotic peptide chai 98.6 2.7E-08 9.1E-13 103.0 7.0 66 135-217 120-195 (467)
200 2ohf_A Protein OLA1, GTP-bindi 98.6 3E-08 1E-12 99.6 6.5 40 34-73 21-60 (396)
201 3r7w_B Gtpase2, GTP-binding pr 98.6 2.1E-07 7.1E-12 91.1 11.7 72 135-218 45-121 (331)
202 2dy1_A Elongation factor G; tr 98.6 1.2E-07 3.9E-12 102.4 9.6 132 34-216 8-139 (665)
203 2j37_W Signal recognition part 98.6 4.7E-07 1.6E-11 94.0 13.7 78 136-225 184-262 (504)
204 3sop_A Neuronal-specific septi 98.5 2.2E-07 7.5E-12 89.1 9.4 82 136-219 60-156 (270)
205 3dm5_A SRP54, signal recogniti 98.5 1.3E-06 4.6E-11 88.9 15.6 81 136-227 183-263 (443)
206 2dby_A GTP-binding protein; GD 98.5 2.1E-07 7.1E-12 93.1 8.4 39 36-74 2-40 (368)
207 1yrb_A ATP(GTP)binding protein 98.5 2.8E-07 9.7E-12 87.3 8.9 28 33-60 12-44 (262)
208 1tq4_A IIGP1, interferon-induc 98.4 1E-06 3.6E-11 89.2 11.4 121 34-216 68-188 (413)
209 1f5n_A Interferon-induced guan 98.3 1.3E-06 4.5E-11 92.2 9.5 27 34-60 37-63 (592)
210 1puj_A YLQF, conserved hypothe 98.3 6.2E-07 2.1E-11 86.5 5.5 27 34-60 119-145 (282)
211 3kl4_A SRP54, signal recogniti 98.3 7.3E-06 2.5E-10 83.4 13.3 84 135-227 179-262 (433)
212 1ni3_A YCHF GTPase, YCHF GTP-b 98.2 6.1E-07 2.1E-11 90.3 5.1 41 34-74 19-60 (392)
213 2v3c_C SRP54, signal recogniti 98.2 2.8E-06 9.4E-11 86.7 9.0 80 134-225 179-260 (432)
214 2wsm_A Hydrogenase expression/ 98.2 1.7E-06 5.7E-11 79.6 6.7 25 34-58 29-53 (221)
215 3cnl_A YLQF, putative uncharac 98.0 3.1E-06 1.1E-10 80.6 4.9 25 36-60 100-124 (262)
216 1rj9_A FTSY, signal recognitio 97.9 2.3E-05 7.8E-10 76.2 8.5 87 136-227 185-271 (304)
217 2yhs_A FTSY, cell division pro 97.9 8.2E-05 2.8E-09 76.5 12.8 83 136-227 376-462 (503)
218 2xxa_A Signal recognition part 97.9 2.5E-05 8.5E-10 79.7 8.7 80 136-226 184-263 (433)
219 1j8m_F SRP54, signal recogniti 97.8 0.00023 7.7E-09 68.9 13.5 81 136-226 181-262 (297)
220 1vma_A Cell division protein F 97.8 5.2E-05 1.8E-09 73.7 8.8 84 135-227 186-273 (306)
221 3e70_C DPA, signal recognition 97.8 0.00015 5E-09 71.2 12.0 81 136-227 212-292 (328)
222 3q5d_A Atlastin-1; G protein, 97.7 2.4E-05 8E-10 79.9 5.6 25 34-58 66-90 (447)
223 2px0_A Flagellar biosynthesis 97.7 0.00026 8.9E-09 68.4 12.7 79 136-227 183-263 (296)
224 2hf9_A Probable hydrogenase ni 97.6 1.6E-05 5.4E-10 73.3 2.3 27 34-60 37-63 (226)
225 1zu4_A FTSY; GTPase, signal re 97.5 0.0015 5E-08 63.9 13.7 84 135-227 191-278 (320)
226 2ffh_A Protein (FFH); SRP54, s 97.3 0.00091 3.1E-08 67.8 11.1 80 136-226 181-260 (425)
227 2og2_A Putative signal recogni 97.2 0.0008 2.7E-08 66.7 9.0 86 137-227 242-327 (359)
228 3b9q_A Chloroplast SRP recepto 97.1 0.00078 2.7E-08 65.3 7.6 86 137-227 185-270 (302)
229 1ls1_A Signal recognition part 97.1 0.0027 9.1E-08 61.2 10.8 81 136-227 181-261 (295)
230 1t9h_A YLOQ, probable GTPase E 96.5 0.0012 4E-08 64.1 2.9 24 36-59 174-197 (307)
231 4dzz_A Plasmid partitioning pr 96.1 0.03 1E-06 50.0 9.9 63 136-216 76-143 (206)
232 4ido_A Atlastin-1; GTPase, GTP 95.8 0.024 8.3E-07 57.5 8.9 23 34-56 66-88 (457)
233 3ney_A 55 kDa erythrocyte memb 95.8 0.0041 1.4E-07 56.2 2.7 38 34-73 18-59 (197)
234 1u0l_A Probable GTPase ENGC; p 95.5 0.0072 2.5E-07 58.3 3.5 66 137-218 64-130 (301)
235 1ex7_A Guanylate kinase; subst 95.3 0.0062 2.1E-07 54.5 2.3 35 38-72 4-40 (186)
236 2rcn_A Probable GTPase ENGC; Y 95.2 0.012 4.1E-07 58.1 4.2 24 36-59 216-239 (358)
237 1ye8_A Protein THEP1, hypothet 95.2 0.0088 3E-07 53.0 2.8 22 37-58 2-23 (178)
238 1kgd_A CASK, peripheral plasma 95.1 0.0085 2.9E-07 53.0 2.4 23 36-58 6-28 (180)
239 1puj_A YLQF, conserved hypothe 95.1 0.03 1E-06 53.4 6.4 52 163-218 14-65 (282)
240 3tif_A Uncharacterized ABC tra 95.1 0.011 3.9E-07 54.8 3.3 24 36-59 32-55 (235)
241 1lvg_A Guanylate kinase, GMP k 95.1 0.0087 3E-07 53.9 2.4 23 36-58 5-27 (198)
242 4g1u_C Hemin import ATP-bindin 95.1 0.014 4.8E-07 55.3 3.9 22 37-58 39-60 (266)
243 3tau_A Guanylate kinase, GMP k 95.1 0.012 4E-07 53.4 3.2 24 35-58 8-31 (208)
244 1mv5_A LMRA, multidrug resista 95.0 0.015 5.1E-07 54.2 4.0 23 37-59 30-52 (243)
245 2pcj_A ABC transporter, lipopr 95.0 0.011 3.8E-07 54.4 3.0 23 37-59 32-54 (224)
246 1znw_A Guanylate kinase, GMP k 95.0 0.0094 3.2E-07 53.9 2.4 23 36-58 21-43 (207)
247 1sgw_A Putative ABC transporte 95.0 0.012 4.2E-07 53.8 3.1 22 37-58 37-58 (214)
248 1u0l_A Probable GTPase ENGC; p 95.0 0.014 4.9E-07 56.2 3.8 25 36-60 170-194 (301)
249 1g6h_A High-affinity branched- 94.9 0.013 4.5E-07 55.1 3.3 23 37-59 35-57 (257)
250 1zp6_A Hypothetical protein AT 94.9 0.012 4.1E-07 52.1 2.9 23 36-58 10-32 (191)
251 3gfo_A Cobalt import ATP-bindi 94.9 0.014 4.7E-07 55.6 3.4 22 37-58 36-57 (275)
252 2pze_A Cystic fibrosis transme 94.9 0.014 4.9E-07 53.8 3.4 22 37-58 36-57 (229)
253 1cip_A Protein (guanine nucleo 94.9 0.013 4.4E-07 57.9 3.2 70 135-217 192-274 (353)
254 1b0u_A Histidine permease; ABC 94.8 0.014 4.7E-07 55.2 3.1 23 37-59 34-56 (262)
255 3tr0_A Guanylate kinase, GMP k 94.8 0.011 3.8E-07 52.9 2.4 23 36-58 8-30 (205)
256 2onk_A Molybdate/tungstate ABC 94.8 0.015 5.2E-07 54.1 3.4 24 36-59 25-48 (240)
257 3c8u_A Fructokinase; YP_612366 94.8 0.011 3.8E-07 53.5 2.3 23 36-58 23-45 (208)
258 2gza_A Type IV secretion syste 94.7 0.015 5E-07 57.7 3.2 30 36-67 176-205 (361)
259 2pt7_A CAG-ALFA; ATPase, prote 94.7 0.013 4.4E-07 57.3 2.7 30 36-67 172-201 (330)
260 1ji0_A ABC transporter; ATP bi 94.7 0.016 5.6E-07 53.8 3.3 23 37-59 34-56 (240)
261 2ff7_A Alpha-hemolysin translo 94.7 0.016 5.6E-07 54.1 3.3 23 37-59 37-59 (247)
262 1np6_A Molybdopterin-guanine d 94.7 0.015 5.2E-07 51.3 2.9 25 34-58 5-29 (174)
263 1vpl_A ABC transporter, ATP-bi 94.7 0.017 6E-07 54.3 3.4 23 37-59 43-65 (256)
264 1s96_A Guanylate kinase, GMP k 94.6 0.013 4.5E-07 53.7 2.4 24 35-58 16-39 (219)
265 2olj_A Amino acid ABC transpor 94.6 0.018 6.1E-07 54.4 3.4 23 37-59 52-74 (263)
266 2nq2_C Hypothetical ABC transp 94.6 0.018 6.1E-07 54.1 3.3 31 37-69 33-63 (253)
267 3a00_A Guanylate kinase, GMP k 94.6 0.014 4.7E-07 51.8 2.3 22 37-58 3-24 (186)
268 2ihy_A ABC transporter, ATP-bi 94.5 0.019 6.5E-07 54.7 3.4 23 37-59 49-71 (279)
269 2ixe_A Antigen peptide transpo 94.5 0.019 6.5E-07 54.5 3.3 22 37-58 47-68 (271)
270 1z6g_A Guanylate kinase; struc 94.5 0.014 4.9E-07 53.3 2.4 22 37-58 25-46 (218)
271 2cbz_A Multidrug resistance-as 94.5 0.019 6.6E-07 53.2 3.3 22 37-58 33-54 (237)
272 1zcb_A G alpha I/13; GTP-bindi 94.5 0.016 5.6E-07 57.3 2.9 70 135-217 200-282 (362)
273 2oap_1 GSPE-2, type II secreti 94.5 0.015 5.3E-07 60.3 2.7 31 37-69 262-292 (511)
274 2yz2_A Putative ABC transporte 94.4 0.02 6.9E-07 54.1 3.3 23 37-59 35-57 (266)
275 4fid_A G protein alpha subunit 94.4 0.03 1E-06 54.8 4.6 71 134-217 159-242 (340)
276 4gp7_A Metallophosphoesterase; 94.3 0.021 7.3E-07 49.9 3.0 22 36-57 10-31 (171)
277 2qi9_C Vitamin B12 import ATP- 94.3 0.023 8E-07 53.1 3.3 23 37-59 28-50 (249)
278 2ghi_A Transport protein; mult 94.1 0.026 8.7E-07 53.2 3.3 23 37-59 48-70 (260)
279 2d2e_A SUFC protein; ABC-ATPas 94.1 0.026 9E-07 52.8 3.3 22 37-58 31-52 (250)
280 1kag_A SKI, shikimate kinase I 94.1 0.021 7.1E-07 49.6 2.4 23 36-58 5-27 (173)
281 1htw_A HI0065; nucleotide-bind 94.1 0.021 7.1E-07 49.6 2.4 22 37-58 35-56 (158)
282 3asz_A Uridine kinase; cytidin 94.1 0.019 6.6E-07 51.7 2.2 23 36-58 7-29 (211)
283 2zu0_C Probable ATP-dependent 94.0 0.028 9.6E-07 53.2 3.3 22 37-58 48-69 (267)
284 2eyu_A Twitching motility prot 94.0 0.021 7.3E-07 53.8 2.4 23 36-58 26-48 (261)
285 2j41_A Guanylate kinase; GMP, 94.0 0.023 7.9E-07 50.8 2.5 23 36-58 7-29 (207)
286 2f1r_A Molybdopterin-guanine d 93.9 0.012 4.1E-07 51.8 0.5 23 36-58 3-25 (171)
287 3ohm_A Guanine nucleotide-bind 93.9 0.027 9.3E-07 54.9 3.0 70 135-217 166-248 (327)
288 3nh6_A ATP-binding cassette SU 93.9 0.021 7.2E-07 55.2 2.2 22 37-58 82-103 (306)
289 2v9p_A Replication protein E1; 93.9 0.024 8.1E-07 54.8 2.5 23 36-58 127-149 (305)
290 3b85_A Phosphate starvation-in 93.9 0.021 7.1E-07 51.9 2.0 23 36-58 23-45 (208)
291 3lw7_A Adenylate kinase relate 93.8 0.034 1.2E-06 47.9 3.3 20 36-55 2-21 (179)
292 2bbw_A Adenylate kinase 4, AK4 93.8 0.035 1.2E-06 51.5 3.5 26 35-60 27-55 (246)
293 2yv5_A YJEQ protein; hydrolase 93.8 0.042 1.4E-06 52.9 4.1 22 36-58 166-187 (302)
294 4eun_A Thermoresistant glucoki 93.7 0.026 8.9E-07 50.6 2.4 23 36-58 30-52 (200)
295 1odf_A YGR205W, hypothetical 3 93.7 0.068 2.3E-06 51.1 5.4 25 34-58 30-54 (290)
296 2pjz_A Hypothetical protein ST 93.7 0.036 1.2E-06 52.3 3.3 25 37-63 32-56 (263)
297 2bdt_A BH3686; alpha-beta prot 93.7 0.027 9.3E-07 49.8 2.4 21 37-57 4-24 (189)
298 1azs_C GS-alpha; complex (lyas 93.7 0.046 1.6E-06 54.8 4.3 70 135-217 216-298 (402)
299 1xjc_A MOBB protein homolog; s 93.5 0.046 1.6E-06 48.0 3.5 25 34-58 3-27 (169)
300 3aez_A Pantothenate kinase; tr 93.4 0.03 1E-06 54.2 2.4 23 36-58 91-113 (312)
301 2i3b_A HCR-ntpase, human cance 93.4 0.033 1.1E-06 49.8 2.4 22 37-58 3-24 (189)
302 3kb2_A SPBC2 prophage-derived 93.4 0.045 1.5E-06 47.2 3.2 22 36-57 2-23 (173)
303 1knq_A Gluconate kinase; ALFA/ 93.4 0.033 1.1E-06 48.5 2.3 23 36-58 9-31 (175)
304 3ec2_A DNA replication protein 93.3 0.069 2.4E-06 46.7 4.5 23 36-58 39-61 (180)
305 3kta_A Chromosome segregation 93.3 0.035 1.2E-06 48.7 2.4 25 34-58 25-49 (182)
306 2yv5_A YJEQ protein; hydrolase 93.3 0.024 8.3E-07 54.6 1.4 53 165-218 72-125 (302)
307 3lnc_A Guanylate kinase, GMP k 93.2 0.027 9.4E-07 51.6 1.7 23 36-58 28-51 (231)
308 2qor_A Guanylate kinase; phosp 93.2 0.044 1.5E-06 49.2 3.0 25 34-58 11-35 (204)
309 2bbs_A Cystic fibrosis transme 93.2 0.041 1.4E-06 52.7 2.9 22 37-58 66-87 (290)
310 3jvv_A Twitching mobility prot 93.2 0.034 1.2E-06 54.9 2.3 23 36-58 124-146 (356)
311 1cke_A CK, MSSA, protein (cyti 93.2 0.041 1.4E-06 50.0 2.8 23 36-58 6-28 (227)
312 4a74_A DNA repair and recombin 93.0 0.034 1.2E-06 50.5 2.0 30 36-65 26-55 (231)
313 2qt1_A Nicotinamide riboside k 93.0 0.062 2.1E-06 48.2 3.7 23 36-58 22-44 (207)
314 2xtz_A Guanine nucleotide-bind 92.9 0.035 1.2E-06 54.8 2.0 70 135-217 182-264 (354)
315 3uie_A Adenylyl-sulfate kinase 92.8 0.044 1.5E-06 49.1 2.4 23 36-58 26-48 (200)
316 3kjh_A CO dehydrogenase/acetyl 92.8 0.28 9.7E-06 44.8 8.0 21 37-57 2-22 (254)
317 2jaq_A Deoxyguanosine kinase; 92.8 0.062 2.1E-06 47.7 3.3 22 37-58 2-23 (205)
318 1z47_A CYSA, putative ABC-tran 92.8 0.057 2E-06 53.2 3.3 23 37-59 43-65 (355)
319 3tui_C Methionine import ATP-b 92.7 0.06 2E-06 53.2 3.3 24 36-59 55-78 (366)
320 2jeo_A Uridine-cytidine kinase 92.7 0.045 1.6E-06 50.7 2.4 22 37-58 27-48 (245)
321 1rz3_A Hypothetical protein rb 92.7 0.092 3.1E-06 47.0 4.4 23 36-58 23-45 (201)
322 1jjv_A Dephospho-COA kinase; P 92.7 0.059 2E-06 48.3 3.1 21 37-57 4-24 (206)
323 4e22_A Cytidylate kinase; P-lo 92.7 0.043 1.5E-06 51.3 2.1 26 35-60 27-55 (252)
324 2yyz_A Sugar ABC transporter, 92.6 0.061 2.1E-06 53.1 3.3 23 37-59 31-53 (359)
325 2it1_A 362AA long hypothetical 92.6 0.063 2.1E-06 53.1 3.3 23 37-59 31-53 (362)
326 1ly1_A Polynucleotide kinase; 92.6 0.062 2.1E-06 46.6 3.0 21 37-57 4-24 (181)
327 2if2_A Dephospho-COA kinase; a 92.6 0.048 1.6E-06 48.7 2.3 21 37-57 3-23 (204)
328 3t61_A Gluconokinase; PSI-biol 92.6 0.05 1.7E-06 48.6 2.4 24 35-58 18-41 (202)
329 3fvq_A Fe(3+) IONS import ATP- 92.5 0.056 1.9E-06 53.3 2.9 23 37-59 32-54 (359)
330 1lw7_A Transcriptional regulat 92.5 0.044 1.5E-06 54.2 2.2 23 36-58 171-193 (365)
331 3rlf_A Maltose/maltodextrin im 92.5 0.066 2.3E-06 53.2 3.3 23 37-59 31-53 (381)
332 1nij_A Hypothetical protein YJ 92.5 0.034 1.2E-06 53.9 1.2 26 34-59 3-28 (318)
333 1g29_1 MALK, maltose transport 92.5 0.066 2.2E-06 53.2 3.3 23 37-59 31-53 (372)
334 1f2t_A RAD50 ABC-ATPase; DNA d 92.4 0.068 2.3E-06 45.6 3.0 23 34-56 22-44 (149)
335 1v43_A Sugar-binding transport 92.4 0.07 2.4E-06 52.9 3.3 23 37-59 39-61 (372)
336 2ewv_A Twitching motility prot 92.3 0.051 1.7E-06 54.0 2.3 23 36-58 137-159 (372)
337 1p9r_A General secretion pathw 92.3 0.051 1.8E-06 54.8 2.3 23 36-58 168-190 (418)
338 2kjq_A DNAA-related protein; s 92.3 0.049 1.7E-06 46.6 1.9 24 35-58 36-59 (149)
339 1sq5_A Pantothenate kinase; P- 92.2 0.051 1.8E-06 52.4 2.0 23 36-58 81-103 (308)
340 3d31_A Sulfate/molybdate ABC t 92.0 0.053 1.8E-06 53.3 2.0 23 37-59 28-50 (348)
341 1qhx_A CPT, protein (chloramph 92.0 0.081 2.8E-06 46.0 2.9 23 36-58 4-26 (178)
342 1nks_A Adenylate kinase; therm 91.9 0.072 2.5E-06 46.7 2.6 22 36-57 2-23 (194)
343 2vp4_A Deoxynucleoside kinase; 91.9 0.065 2.2E-06 49.2 2.3 23 36-58 21-43 (230)
344 1kht_A Adenylate kinase; phosp 91.8 0.085 2.9E-06 46.2 3.0 22 36-57 4-25 (192)
345 3vaa_A Shikimate kinase, SK; s 91.8 0.095 3.3E-06 46.7 3.3 22 36-57 26-47 (199)
346 4b4t_L 26S protease subunit RP 91.8 1.3 4.4E-05 44.7 11.9 23 36-58 216-238 (437)
347 2ehv_A Hypothetical protein PH 91.8 0.085 2.9E-06 48.4 3.0 22 36-57 31-52 (251)
348 3trf_A Shikimate kinase, SK; a 91.7 0.099 3.4E-06 45.8 3.3 22 35-56 5-26 (185)
349 3gd7_A Fusion complex of cysti 91.6 0.084 2.9E-06 52.7 2.9 23 36-58 48-70 (390)
350 2iyv_A Shikimate kinase, SK; t 91.6 0.089 3E-06 46.1 2.8 21 36-56 3-23 (184)
351 1y63_A LMAJ004144AAA protein; 91.6 0.12 4.1E-06 45.5 3.7 25 34-58 9-33 (184)
352 3qf7_A RAD50; ABC-ATPase, ATPa 91.6 0.086 2.9E-06 52.2 3.0 24 34-57 22-45 (365)
353 2npi_A Protein CLP1; CLP1-PCF1 91.6 0.063 2.1E-06 54.9 2.0 26 34-59 137-162 (460)
354 1via_A Shikimate kinase; struc 91.5 0.099 3.4E-06 45.4 3.0 23 36-58 5-27 (175)
355 3h2y_A GTPase family protein; 91.4 0.13 4.5E-06 50.9 4.1 55 161-219 58-112 (368)
356 3cm0_A Adenylate kinase; ATP-b 91.4 0.1 3.5E-06 45.7 3.0 21 36-56 5-25 (186)
357 3tqc_A Pantothenate kinase; bi 91.4 0.079 2.7E-06 51.4 2.4 22 37-58 94-115 (321)
358 1oxx_K GLCV, glucose, ABC tran 91.4 0.058 2E-06 53.2 1.5 23 37-59 33-55 (353)
359 1yqt_A RNAse L inhibitor; ATP- 91.4 0.13 4.3E-06 53.7 4.1 23 37-59 49-71 (538)
360 1yqt_A RNAse L inhibitor; ATP- 91.3 0.14 4.7E-06 53.4 4.3 23 37-59 314-336 (538)
361 2plr_A DTMP kinase, probable t 91.3 0.11 3.6E-06 46.5 3.0 23 36-58 5-27 (213)
362 2rhm_A Putative kinase; P-loop 91.2 0.093 3.2E-06 46.1 2.6 22 36-57 6-27 (193)
363 3iij_A Coilin-interacting nucl 91.2 0.12 4.1E-06 45.1 3.2 23 34-56 10-32 (180)
364 2c95_A Adenylate kinase 1; tra 91.2 0.12 4.1E-06 45.5 3.2 24 34-57 8-31 (196)
365 2v54_A DTMP kinase, thymidylat 91.1 0.12 4.2E-06 45.8 3.3 23 36-58 5-27 (204)
366 3ozx_A RNAse L inhibitor; ATP 91.1 0.14 4.7E-06 53.5 4.0 23 37-59 296-318 (538)
367 3fb4_A Adenylate kinase; psych 91.1 0.12 4.1E-06 46.5 3.2 20 37-56 2-21 (216)
368 3bk7_A ABC transporter ATP-bin 90.9 0.16 5.5E-06 53.7 4.4 23 37-59 384-406 (607)
369 3b5x_A Lipid A export ATP-bind 90.9 0.14 4.6E-06 54.0 3.8 22 37-58 371-392 (582)
370 2z0h_A DTMP kinase, thymidylat 90.8 0.12 4.2E-06 45.5 2.9 21 37-57 2-22 (197)
371 1e6c_A Shikimate kinase; phosp 90.8 0.13 4.4E-06 44.3 3.0 22 36-57 3-24 (173)
372 2pez_A Bifunctional 3'-phospho 90.8 0.1 3.6E-06 45.5 2.4 23 36-58 6-28 (179)
373 3dl0_A Adenylate kinase; phosp 90.8 0.13 4.5E-06 46.3 3.2 21 37-57 2-22 (216)
374 2x8a_A Nuclear valosin-contain 90.6 0.1 3.5E-06 49.3 2.4 21 38-58 47-67 (274)
375 3euj_A Chromosome partition pr 90.6 0.1 3.5E-06 53.5 2.5 23 36-58 30-52 (483)
376 3thx_A DNA mismatch repair pro 90.6 0.97 3.3E-05 50.1 10.4 19 37-55 664-682 (934)
377 1tev_A UMP-CMP kinase; ploop, 90.6 0.14 4.6E-06 45.0 3.0 22 36-57 4-25 (196)
378 1ixz_A ATP-dependent metallopr 90.6 0.11 3.7E-06 48.2 2.4 21 38-58 52-72 (254)
379 2pbr_A DTMP kinase, thymidylat 90.5 0.13 4.6E-06 45.0 2.9 21 37-57 2-22 (195)
380 3bk7_A ABC transporter ATP-bin 90.5 0.17 5.7E-06 53.6 4.1 23 37-59 119-141 (607)
381 2pt5_A Shikimate kinase, SK; a 90.5 0.16 5.3E-06 43.6 3.3 21 37-57 2-22 (168)
382 4a82_A Cystic fibrosis transme 90.5 0.11 3.7E-06 54.8 2.6 22 37-58 369-390 (578)
383 3j16_B RLI1P; ribosome recycli 90.5 0.2 6.7E-06 53.1 4.6 23 37-59 105-127 (608)
384 1jbk_A CLPB protein; beta barr 90.5 0.33 1.1E-05 41.8 5.5 24 35-58 43-66 (195)
385 3b60_A Lipid A export ATP-bind 90.5 0.12 4.1E-06 54.4 3.0 22 37-58 371-392 (582)
386 2bwj_A Adenylate kinase 5; pho 90.5 0.14 4.7E-06 45.2 3.0 22 36-57 13-34 (199)
387 2yvu_A Probable adenylyl-sulfa 90.4 0.14 4.9E-06 44.9 3.0 24 35-58 13-36 (186)
388 2w0m_A SSO2452; RECA, SSPF, un 90.4 0.11 3.9E-06 46.8 2.4 22 37-58 25-46 (235)
389 2wwf_A Thymidilate kinase, put 90.3 0.12 4.2E-06 46.1 2.5 23 35-57 10-32 (212)
390 4b4t_K 26S protease regulatory 90.3 1.5 5.3E-05 44.0 10.8 25 34-58 204-229 (428)
391 3qf4_A ABC transporter, ATP-bi 90.3 0.12 4.1E-06 54.5 2.8 22 37-58 371-392 (587)
392 2ga8_A Hypothetical 39.9 kDa p 90.3 0.28 9.7E-06 48.1 5.2 25 34-58 23-47 (359)
393 2yl4_A ATP-binding cassette SU 90.2 0.12 4E-06 54.7 2.6 22 37-58 372-393 (595)
394 1gtv_A TMK, thymidylate kinase 90.2 0.062 2.1E-06 48.2 0.4 22 37-58 2-23 (214)
395 2cdn_A Adenylate kinase; phosp 90.2 0.2 7E-06 44.5 3.8 24 34-57 18-42 (201)
396 1nn5_A Similar to deoxythymidy 90.1 0.13 4.5E-06 46.0 2.6 22 36-57 10-31 (215)
397 3a4m_A L-seryl-tRNA(SEC) kinas 90.1 0.15 5.1E-06 47.7 3.0 23 35-57 4-26 (260)
398 3qks_A DNA double-strand break 90.0 0.16 5.4E-06 45.7 3.0 23 34-56 22-44 (203)
399 3ozx_A RNAse L inhibitor; ATP 90.0 0.15 5.1E-06 53.2 3.1 23 37-59 27-49 (538)
400 1zd8_A GTP:AMP phosphotransfer 90.0 0.16 5.4E-06 46.3 3.0 24 34-57 6-29 (227)
401 1cr0_A DNA primase/helicase; R 89.8 0.12 4E-06 49.3 2.0 22 37-58 37-58 (296)
402 1gvn_B Zeta; postsegregational 89.8 0.4 1.4E-05 45.6 5.8 22 36-57 34-55 (287)
403 1qf9_A UMP/CMP kinase, protein 89.6 0.15 5.3E-06 44.5 2.5 22 36-57 7-28 (194)
404 1aky_A Adenylate kinase; ATP:A 89.6 0.2 6.8E-06 45.3 3.3 23 35-57 4-26 (220)
405 1ukz_A Uridylate kinase; trans 89.5 0.19 6.6E-06 44.6 3.2 23 35-57 15-37 (203)
406 1in4_A RUVB, holliday junction 89.5 0.15 5.2E-06 49.6 2.6 24 35-58 51-74 (334)
407 1vht_A Dephospho-COA kinase; s 89.5 0.18 6.1E-06 45.5 2.9 22 36-57 5-26 (218)
408 3ake_A Cytidylate kinase; CMP 89.5 0.21 7E-06 44.4 3.3 22 36-57 3-24 (208)
409 1iy2_A ATP-dependent metallopr 89.5 0.15 5E-06 48.1 2.4 21 38-58 76-96 (278)
410 2vli_A Antibiotic resistance p 89.4 0.15 5.2E-06 44.3 2.3 22 36-57 6-27 (183)
411 3qf4_B Uncharacterized ABC tra 89.4 0.15 5.2E-06 53.9 2.7 22 37-58 383-404 (598)
412 1e4v_A Adenylate kinase; trans 89.4 0.19 6.3E-06 45.3 2.9 21 37-57 2-22 (214)
413 3fkq_A NTRC-like two-domain pr 89.2 12 0.00039 36.6 16.2 110 135-266 259-369 (373)
414 3nwj_A ATSK2; P loop, shikimat 89.2 0.16 5.3E-06 47.5 2.3 23 35-57 48-70 (250)
415 3ec1_A YQEH GTPase; atnos1, at 89.2 0.36 1.2E-05 47.7 5.1 53 163-219 62-114 (369)
416 1uf9_A TT1252 protein; P-loop, 89.1 0.2 6.7E-06 44.4 2.8 24 35-58 8-31 (203)
417 1zak_A Adenylate kinase; ATP:A 89.0 0.18 6.1E-06 45.7 2.6 23 35-57 5-27 (222)
418 2p5t_B PEZT; postsegregational 88.8 0.39 1.4E-05 44.5 4.9 23 36-58 33-55 (253)
419 3cnl_A YLQF, putative uncharac 88.7 0.15 5.1E-06 48.0 1.8 50 163-218 12-61 (262)
420 1fnn_A CDC6P, cell division co 88.7 0.43 1.5E-05 46.7 5.3 25 34-58 43-67 (389)
421 2xb4_A Adenylate kinase; ATP-b 88.7 0.24 8.2E-06 45.0 3.2 21 37-57 2-22 (223)
422 3j16_B RLI1P; ribosome recycli 88.6 0.29 9.9E-06 51.8 4.1 22 38-59 381-402 (608)
423 1zuh_A Shikimate kinase; alpha 88.6 0.25 8.4E-06 42.5 3.0 22 35-56 7-28 (168)
424 1svm_A Large T antigen; AAA+ f 88.6 0.18 6.1E-06 50.1 2.4 23 36-58 170-192 (377)
425 1m7g_A Adenylylsulfate kinase; 88.5 0.19 6.5E-06 45.2 2.4 23 36-58 26-48 (211)
426 2cvh_A DNA repair and recombin 88.5 0.19 6.6E-06 45.0 2.4 22 36-57 21-42 (220)
427 2ze6_A Isopentenyl transferase 88.5 0.23 8E-06 46.2 3.0 21 37-57 3-23 (253)
428 3qkt_A DNA double-strand break 88.4 0.21 7.2E-06 48.7 2.8 24 34-57 22-45 (339)
429 1n0w_A DNA repair protein RAD5 88.3 0.2 6.9E-06 45.6 2.4 23 36-58 25-47 (243)
430 1tue_A Replication protein E1; 88.3 0.49 1.7E-05 42.8 4.8 21 37-57 60-80 (212)
431 2grj_A Dephospho-COA kinase; T 88.1 0.26 8.9E-06 44.0 2.9 24 34-57 11-34 (192)
432 3tlx_A Adenylate kinase 2; str 88.0 0.28 9.5E-06 45.3 3.2 23 35-57 29-51 (243)
433 1ak2_A Adenylate kinase isoenz 88.0 0.3 1E-05 44.7 3.3 23 35-57 16-38 (233)
434 3be4_A Adenylate kinase; malar 87.9 0.27 9.2E-06 44.4 3.0 23 35-57 5-27 (217)
435 2obl_A ESCN; ATPase, hydrolase 87.9 0.2 7E-06 49.1 2.3 24 36-59 72-95 (347)
436 4b4t_J 26S protease regulatory 87.8 2 6.7E-05 42.9 9.4 22 37-58 184-205 (405)
437 2o5v_A DNA replication and rep 87.7 0.22 7.5E-06 49.1 2.4 26 33-58 24-49 (359)
438 1e69_A Chromosome segregation 87.7 0.27 9.2E-06 47.5 3.0 25 34-58 23-47 (322)
439 4eaq_A DTMP kinase, thymidylat 87.6 0.29 9.9E-06 44.9 3.0 23 36-58 27-49 (229)
440 2p65_A Hypothetical protein PF 87.6 0.53 1.8E-05 40.4 4.6 24 35-58 43-66 (187)
441 1w1w_A Structural maintenance 87.5 0.25 8.6E-06 49.8 2.7 24 36-59 27-50 (430)
442 4aby_A DNA repair protein RECN 87.4 0.088 3E-06 52.7 -0.7 26 33-58 58-83 (415)
443 1t9h_A YLOQ, probable GTPase E 87.4 0.61 2.1E-05 44.8 5.2 53 166-219 80-133 (307)
444 1sxj_E Activator 1 40 kDa subu 87.4 0.23 7.8E-06 48.3 2.3 25 34-58 35-59 (354)
445 2chg_A Replication factor C sm 87.3 0.57 1.9E-05 41.4 4.8 24 35-58 38-61 (226)
446 2dpy_A FLII, flagellum-specifi 87.3 0.23 7.8E-06 50.4 2.3 23 36-58 158-180 (438)
447 1a5t_A Delta prime, HOLB; zinc 87.2 11 0.00038 36.1 14.4 25 34-58 22-47 (334)
448 3n70_A Transport activator; si 87.1 0.83 2.8E-05 38.2 5.4 23 36-58 25-47 (145)
449 1qhl_A Protein (cell division 87.1 0.066 2.3E-06 49.3 -1.7 22 38-59 30-51 (227)
450 2iw3_A Elongation factor 3A; a 87.0 0.21 7E-06 55.6 1.8 23 37-59 701-723 (986)
451 1sxj_C Activator 1 40 kDa subu 86.9 0.41 1.4E-05 46.4 3.8 25 34-58 45-69 (340)
452 1d2n_A N-ethylmaleimide-sensit 86.8 0.82 2.8E-05 42.6 5.7 25 34-58 63-87 (272)
453 2w58_A DNAI, primosome compone 86.8 0.96 3.3E-05 39.9 5.9 23 36-58 55-77 (202)
454 4b4t_I 26S protease regulatory 86.7 3.5 0.00012 41.3 10.5 25 34-58 214-239 (437)
455 3auy_A DNA double-strand break 86.7 0.29 1E-05 48.3 2.6 23 34-56 24-46 (371)
456 3l82_B F-box only protein 4; T 86.6 1 3.5E-05 40.9 5.9 92 162-255 115-217 (227)
457 3thx_B DNA mismatch repair pro 86.6 2.7 9.2E-05 46.5 10.5 22 37-58 675-696 (918)
458 3h4m_A Proteasome-activating n 86.5 0.62 2.1E-05 43.6 4.7 24 35-58 51-74 (285)
459 1uj2_A Uridine-cytidine kinase 86.4 0.35 1.2E-05 44.8 2.9 22 36-57 23-44 (252)
460 1ltq_A Polynucleotide kinase; 86.3 0.36 1.2E-05 45.7 3.0 21 37-57 4-24 (301)
461 3bos_A Putative DNA replicatio 86.2 0.43 1.5E-05 43.1 3.3 24 35-58 52-75 (242)
462 3exa_A TRNA delta(2)-isopenten 86.2 0.49 1.7E-05 45.6 3.8 24 35-58 3-26 (322)
463 1lv7_A FTSH; alpha/beta domain 86.2 0.31 1.1E-05 45.1 2.4 23 36-58 46-68 (257)
464 1q3t_A Cytidylate kinase; nucl 86.2 0.33 1.1E-05 44.4 2.6 24 34-57 15-38 (236)
465 3a8t_A Adenylate isopentenyltr 86.1 0.56 1.9E-05 45.7 4.2 23 36-58 41-63 (339)
466 3r20_A Cytidylate kinase; stru 86.1 0.44 1.5E-05 43.9 3.3 22 35-56 9-30 (233)
467 1nlf_A Regulatory protein REPA 86.0 0.28 9.6E-06 46.2 2.0 21 37-57 32-52 (279)
468 3sr0_A Adenylate kinase; phosp 85.9 0.44 1.5E-05 43.0 3.2 22 37-58 2-23 (206)
469 2dhr_A FTSH; AAA+ protein, hex 85.8 0.63 2.2E-05 47.9 4.7 22 37-58 66-87 (499)
470 2f6r_A COA synthase, bifunctio 85.8 0.35 1.2E-05 45.8 2.6 20 37-56 77-96 (281)
471 3k9g_A PF-32 protein; ssgcid, 85.6 4.5 0.00015 37.3 10.2 88 135-244 144-233 (267)
472 3umf_A Adenylate kinase; rossm 85.6 0.48 1.6E-05 43.1 3.3 25 34-58 28-52 (217)
473 3g5u_A MCG1178, multidrug resi 85.5 0.38 1.3E-05 55.5 3.1 22 37-58 418-439 (1284)
474 2ius_A DNA translocase FTSK; n 85.4 0.39 1.3E-05 49.6 2.9 24 34-57 166-189 (512)
475 4b4t_M 26S protease regulatory 85.4 2.3 8E-05 42.8 8.5 25 34-58 213-238 (434)
476 3co5_A Putative two-component 85.3 0.72 2.5E-05 38.6 4.1 22 37-58 29-50 (143)
477 4b4t_H 26S protease regulatory 85.3 3.9 0.00013 41.5 10.0 23 36-58 244-266 (467)
478 2ph1_A Nucleotide-binding prot 85.3 2.7 9.3E-05 38.8 8.5 66 135-215 128-194 (262)
479 1wb9_A DNA mismatch repair pro 85.2 3.5 0.00012 44.9 10.5 23 37-59 609-631 (800)
480 4f4c_A Multidrug resistance pr 84.9 0.3 1E-05 56.5 1.9 52 159-212 1222-1274(1321)
481 3cf0_A Transitional endoplasmi 84.8 0.79 2.7E-05 43.6 4.6 23 36-58 50-72 (301)
482 3cf2_A TER ATPase, transitiona 84.8 2.6 9E-05 45.9 9.1 26 33-58 235-261 (806)
483 1p5z_B DCK, deoxycytidine kina 84.7 0.42 1.4E-05 44.5 2.5 25 34-58 23-47 (263)
484 4f4c_A Multidrug resistance pr 84.7 0.41 1.4E-05 55.4 2.9 22 37-58 446-467 (1321)
485 3pfi_A Holliday junction ATP-d 83.9 1.1 3.7E-05 43.1 5.2 25 34-58 54-78 (338)
486 2qby_A CDC6 homolog 1, cell di 83.7 0.53 1.8E-05 45.8 2.9 24 35-58 45-68 (386)
487 1njg_A DNA polymerase III subu 83.6 0.66 2.3E-05 41.4 3.3 23 36-58 46-68 (250)
488 2qz4_A Paraplegin; AAA+, SPG7, 83.5 1.6 5.6E-05 39.9 6.1 23 36-58 40-62 (262)
489 3cr8_A Sulfate adenylyltranfer 83.3 0.31 1.1E-05 50.8 1.1 22 37-58 371-392 (552)
490 2qby_B CDC6 homolog 3, cell di 83.2 1.3 4.4E-05 43.2 5.5 24 35-58 45-68 (384)
491 3zvl_A Bifunctional polynucleo 83.1 0.6 2E-05 46.9 3.0 24 35-58 258-281 (416)
492 1a7j_A Phosphoribulokinase; tr 83.1 0.41 1.4E-05 45.6 1.7 24 34-57 4-27 (290)
493 2iw3_A Elongation factor 3A; a 83.0 0.51 1.7E-05 52.5 2.6 23 37-59 463-485 (986)
494 2ocp_A DGK, deoxyguanosine kin 82.5 0.61 2.1E-05 42.7 2.6 23 36-58 3-25 (241)
495 3te6_A Regulatory protein SIR3 82.5 1.1 3.6E-05 43.4 4.4 25 34-58 44-68 (318)
496 2qmh_A HPR kinase/phosphorylas 82.3 0.74 2.5E-05 41.3 3.0 24 35-58 34-57 (205)
497 3ux8_A Excinuclease ABC, A sub 82.3 0.55 1.9E-05 50.3 2.5 20 37-56 350-369 (670)
498 3t15_A Ribulose bisphosphate c 82.2 0.66 2.3E-05 44.1 2.8 25 34-58 34-59 (293)
499 2ce7_A Cell division protein F 81.9 1.6 5.6E-05 44.5 5.7 22 37-58 51-72 (476)
500 2dr3_A UPF0273 protein PH0284; 81.7 0.69 2.3E-05 42.0 2.6 22 36-57 24-45 (247)
No 1
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=100.00 E-value=1.6e-75 Score=629.85 Aligned_cols=446 Identities=44% Similarity=0.723 Sum_probs=405.4
Q ss_pred hhhhHHHHHHHHHHHHHHhccCCCCCCccCCCCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCC
Q 012559 3 TMTSLIGLINKIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEG 82 (461)
Q Consensus 3 ~~~~l~~~~~~lq~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~ 82 (461)
+|++||+++|+|||.++++|... .+++|+|+|||.+|+|||||+|+|+|.+|||++.++|||+|+++++.+.+
T Consensus 25 ~~~~li~~inkl~d~l~~lg~~~------~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~- 97 (772)
T 3zvr_A 25 GMEDLIPLVNRLQDAFSAIGQNA------DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNST- 97 (772)
T ss_dssp CGGGHHHHHHHHHHHHHTTTCCG------GGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECS-
T ss_pred cHHHHHHHHHHHHHHHHhcCccc------cCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCC-
Confidence 49999999999999999998643 26899999999999999999999999999999999999999999998875
Q ss_pred CCcchhhhcCCCCcccChHHHHHHHHHHhhhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHH
Q 012559 83 GTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDI 162 (461)
Q Consensus 83 ~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i 162 (461)
.+|+.+.+..++.+.++++++.++...+....|.+++|+.+++.+++++|+.++++||||||+++.+..+||.++...+
T Consensus 98 -~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i 176 (772)
T 3zvr_A 98 -TEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQI 176 (772)
T ss_dssp -SCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHH
T ss_pred -cchhheeccCCcccCCHHHHHHHHHHHHhhhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999999988888898888889
Q ss_pred HHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCccCCCccHHHHHhCcccccCCCeeEEEe
Q 012559 163 ENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVN 242 (461)
Q Consensus 163 ~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~ 242 (461)
..++..|+.+..++||+|++++.++..++.+.+++.+++.+.|+|+|+||+|+++++....+++.+..+++++||..+++
T Consensus 177 ~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~ 256 (772)
T 3zvr_A 177 RDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVN 256 (772)
T ss_dssp HHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCC
T ss_pred HHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEE
Confidence 99999999977779999999999999999878999999999999999999999988776677777666778889999999
Q ss_pred CChhhhcccccHHHHHHHHHhhhccCCCCccchhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCC
Q 012559 243 RSQADINKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERVIRQRIPSIIALINKNIDEINAELDRIGR 322 (461)
Q Consensus 243 ~s~~~~~~~~~~~~~~~~E~~ff~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~~L~~lg~ 322 (461)
+|+.+.....+.......|..||.++++|..+.++.|+..|++.|++.|..|++++||+++.+|+.++..++.+++++|+
T Consensus 257 iSA~~G~GvdeL~eaI~~e~~ffpe~P~yd~ltDr~g~~~LaEiLrEkL~~hi~~ELP~l~~~I~~~l~s~~vele~~~~ 336 (772)
T 3zvr_A 257 RSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVDEYKN 336 (772)
T ss_dssp CCCEESSSSEEHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccccchhHHHHHHHHHHhccCCcchhhhhhcccHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHhCC
Confidence 99987555555666667788999999999888899999999999999999999999999999999999999999999998
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHhcCCc--------cCCchhHhhhhchhHHHhccCCcccccchhhHHHHHHhhc
Q 012559 323 PIGVDSGAQLYTILEMCRAFERVFKEHLDGGR--------AGGDRIYGVFDHQLPAALKKLPFDRHLSTRNVQKVVSEAD 394 (461)
Q Consensus 323 ~~~~~~~~~~~~l~~~~~~f~~~~~~~i~g~~--------~gg~~i~~~f~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~ 394 (461)
+++.++..+..++++++++|++.|.++++|.+ .||+||+++|++.|++.+.++++++.+++++|+++|+|++
T Consensus 337 ~~~~~~~~~~~~ll~~~~~f~~~~~~~i~G~~~~~~~~el~ggari~~if~~~f~~~~~~~~~~~~~~~~~I~~~i~n~~ 416 (772)
T 3zvr_A 337 FRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARINRIFHERFPFELVKMEFDEKELRREISYAIKNIH 416 (772)
T ss_dssp HCCCSSSCSHHHHHHHHHHHHHHHHHHHTC---------CCHHHHHHHHHHTHHHHHHHTTSCCHHHHHHHHHHHHHHCC
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCcccCCCCeeeehhHHHHhHHHHhcCCCchhhhHHHHHHHHHhCC
Confidence 88877777777899999999999999999998 5899999999999999999999999999999999999999
Q ss_pred CCCCCCCCChHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHhhhhhhccchHhHHHHhcc
Q 012559 395 GYQPHLIAPEQGYRRLIDGSISYFKGPAEASVDAVHFVLKELVRKSIAETEQQKLWKNFVMKAGK 459 (461)
Q Consensus 395 g~~p~~~~pe~~f~~li~~~i~~l~~P~~~c~~~v~~~l~~~v~~~~~~~~~~~rfp~l~~~~~~ 459 (461)
|++|++|+|+.+|+.||++||++|++||++|++.|+++|.+++++|. ++|.|||+|++++.+
T Consensus 417 G~~~~lf~p~~~fe~LVk~QI~rl~ePsl~CVdlV~~eL~~iv~~~~---~~l~RfP~Lr~ei~~ 478 (772)
T 3zvr_A 417 DIRTGLFTPDLAFEATVKKQVQKLKEPSIKCVDMVVSELTSTIRKCS---EKLQQYPRLREEMER 478 (772)
T ss_dssp ------CHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHG---GGGTTCHHHHHHHHH
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999883 589999999998754
No 2
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=100.00 E-value=1.6e-61 Score=518.14 Aligned_cols=438 Identities=30% Similarity=0.467 Sum_probs=367.7
Q ss_pred HHHHHHHHhccCCCCCCccCCCCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcC
Q 012559 13 KIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHA 92 (461)
Q Consensus 13 ~lq~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~ 92 (461)
++.|.+.++|... .+++|+|+|||++||||||||++|+|. .+|+++|.||+++..+.+.+......|.....-
T Consensus 29 ~~id~l~~~gv~~------~l~lp~iaIvG~nGsGKSTLL~~I~Gl-~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~ 101 (608)
T 3szr_A 29 DLIDSLRALGVEQ------DLALPAIAVIGDQSSGKSSVLEALSGV-ALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSY 101 (608)
T ss_dssp HHHHHHHHHSCCS------SCCCCCEECCCCTTSCHHHHHHHHHSC-C-------CCCSCEEEEEEECSSSSCCEEEESC
T ss_pred HHHHHHHhCCCCC------cccCCeEEEECCCCChHHHHHHHHhCC-CCCCCCCeEEEcCEEEEEecCCccccceeEEee
Confidence 4456667776543 268999999999999999999999998 569999999999999988876654444432221
Q ss_pred --CCCcccChHHHHHHHHHHhhhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHh
Q 012559 93 --PRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYV 170 (461)
Q Consensus 93 --~~~~~~d~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi 170 (461)
....+.++..+.+.+........+.+.+++.+.+.+.+.+++.|+|+|+|+||+...++.+++......+.+++.+|+
T Consensus 102 v~Q~~~l~~~~tv~e~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l 181 (608)
T 3szr_A 102 QDYEIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYI 181 (608)
T ss_dssp C---CCCCCHHHHHTTHHHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHT
T ss_pred ecccccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHH
Confidence 123456778888888777777777788999999999999999999999999999999888999999999999999999
Q ss_pred cCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCccCCCc--cHHHHHhCcccccCCCeeEEEeCChhhh
Q 012559 171 EKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGT--NALEVLEGRSYRLQHPWVGIVNRSQADI 248 (461)
Q Consensus 171 ~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~--~~~~~l~~~~~~l~~g~~~v~~~s~~~~ 248 (461)
.++.++++++++++.|+.+++++++++++++.|.|||+|+||+|++++++ .+.+++.|..+++++||++|+|+|++++
T Consensus 182 ~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~~l~~~~~~l~~g~~~v~nr~~~~~ 261 (608)
T 3szr_A 182 QRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIVKCRGQQEI 261 (608)
T ss_dssp TSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCCCC--CCSCCSSCEECCCCSCTTCT
T ss_pred hcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHHHHHhCcccccCceEEEEecCchhhc
Confidence 99999999999999999999999999999999999999999999998876 3678888899999999999999999999
Q ss_pred cccccHHHHHHHHHhhhccCCCCccchh--ccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 012559 249 NKNVDMIAARRKEREYFETSPEYGHLAS--KMGSEYLAKLLSQHLERVIRQRIPSIIALINKNIDEINAELDRIGRPIGV 326 (461)
Q Consensus 249 ~~~~~~~~~~~~E~~ff~~~~~~~~~~~--~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~~L~~lg~~~~~ 326 (461)
....+...+...|..||.+++||+.+.+ ++|+++|+++|+++|.+||+++||.++.+|+..+.+++.+|.+||.+++.
T Consensus 262 ~~~~~~~~~~~~E~~fF~~~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~el~~lg~~~~~ 341 (608)
T 3szr_A 262 QDQLSLSEALQREKIFFENHPYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQKYGVDIPE 341 (608)
T ss_dssp TTCCCHHHHTTTHHHHTTTCTTTSGGGGTCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCC
T ss_pred ccCCCHHHHHHHHHHHHccCccccccCccccccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 8899999998899999999999998764 89999999999999999999999999999999999999999999999888
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhcCCccCC---chhHhhhhchhHHHhccCCc----ccccchhhHHHHHHhhcCCCCC
Q 012559 327 DSGAQLYTILEMCRAFERVFKEHLDGGRAGG---DRIYGVFDHQLPAALKKLPF----DRHLSTRNVQKVVSEADGYQPH 399 (461)
Q Consensus 327 ~~~~~~~~l~~~~~~f~~~~~~~i~g~~~gg---~~i~~~f~~~~~~~~~~~~~----~~~~~~~~i~~~i~~~~g~~p~ 399 (461)
+..+++.+|++++++|++.+.++++|.+..+ .+++..+++.|..|...+.. .......+|+++++|++|++++
T Consensus 342 ~~~~~~~~l~~~~~~f~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~ 421 (608)
T 3szr_A 342 DENEKMFFLIDKVNAFNQDITALMQGEETVGEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQAAAAELP 421 (608)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCSSS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCccccHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHccCCCCC
Confidence 8888889999999999999999999997532 57787788888777655432 1224468899999999999999
Q ss_pred CCCChHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHhhhhhhccchHhHHHHhcc
Q 012559 400 LIAPEQGYRRLIDGSISYFKGPAEASVDAVHFVLKELVRKSIAETEQQKLWKNFVMKAGK 459 (461)
Q Consensus 400 ~~~pe~~f~~li~~~i~~l~~P~~~c~~~v~~~l~~~v~~~~~~~~~~~rfp~l~~~~~~ 459 (461)
+|+|+.+|+.||++||++|++|+.+|++.|++++..++.++.. ++|.|||+|++++..
T Consensus 422 ~f~~~~~fe~lvk~qi~~l~~Pa~~~v~~V~~~v~~~~~~~~~--~~f~rfp~L~~~~~~ 479 (608)
T 3szr_A 422 GFVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSI--KNFEEFFNLHRTAKS 479 (608)
T ss_dssp CSSCTHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHH--HHHSSCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhHHHHHHHH
Confidence 9999999999999999999999999999999999999987654 579999999998754
No 3
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=100.00 E-value=2.8e-52 Score=421.02 Aligned_cols=329 Identities=74% Similarity=1.173 Sum_probs=290.5
Q ss_pred hhhHHHHHHHHHHHHHHhccCCC--CCCccCCCCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecC
Q 012559 4 MTSLIGLINKIQRACTVLGDHGG--EGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTE 81 (461)
Q Consensus 4 ~~~l~~~~~~lq~~~~~~~~~~~--~~~~~~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~ 81 (461)
|++||+++|+||++++.+|..+. .++..+..+|+|+|||++|||||||+|+|+|.+|+|++.++|||+|+++++++.+
T Consensus 1 ~~~l~~~~~~l~~~~~~~~~~~~~~~l~~i~~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~ 80 (360)
T 3t34_A 1 MENLISLVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKID 80 (360)
T ss_dssp -CCHHHHHHHTTTTTTSCSSCCSSCCC----CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECS
T ss_pred ChhHHHHHHHHHHHHHhhCccccccccccccccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCC
Confidence 79999999999999999986431 3445567999999999999999999999999999999999999999999998876
Q ss_pred CC-CcchhhhcCCCCcccChHHHHHHHHHHhhhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHH
Q 012559 82 GG-TDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVE 160 (461)
Q Consensus 82 ~~-~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~ 160 (461)
.. ..|+.+.+.++..+.||+.+..++...+....|.+.+|+.+++.+++.+|+.++++||||||+.+....+|+.++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~ 160 (360)
T 3t34_A 81 DGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVK 160 (360)
T ss_dssp SCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHH
T ss_pred CcccceeeeecCCCcccCCHHHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHH
Confidence 65 77888999999999999999999999999999999999999999999999999999999999999988888999999
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCccCCCccHHHHHhCcccccCCCeeEE
Q 012559 161 DIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGI 240 (461)
Q Consensus 161 ~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v 240 (461)
.+..++..|+.++++||++|.+++.+..+++++.+++.+++.+.|+|+|+||+|+++++....+++++....+++||+.+
T Consensus 161 ~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v 240 (360)
T 3t34_A 161 DIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGV 240 (360)
T ss_dssp HHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEE
T ss_pred HHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEE
Confidence 99999999999999999999899889888999999999999999999999999999887778888888888999999999
Q ss_pred EeCChhhhcccccHHHHHHHHHhhhccCCCCccchhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 012559 241 VNRSQADINKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERVIRQRIPSIIALINKNIDEINAELDRI 320 (461)
Q Consensus 241 ~~~s~~~~~~~~~~~~~~~~E~~ff~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~~L~~l 320 (461)
+++|+.+++..++...+...|..||.++++|+.+..++|+..|+++|+++|.+||+++||.++.+|+..+.+++++|.+|
T Consensus 241 ~~~s~~~i~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~l~~~l~~~i~~~lp~l~~~i~~~l~~~~~~l~~l 320 (360)
T 3t34_A 241 VNRSQADINKNVDMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIPGIQSLINKTVLELETELSRL 320 (360)
T ss_dssp CCCCHHHHHTTCCHHHHHHHHHHHHTTCTTTGGGGGGCSHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHTTTTCC----
T ss_pred EECChHHhccCCCHHHHHHHHHHHhcCCCccccchhhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHH
Q 012559 321 GRPIGVDSGAQL 332 (461)
Q Consensus 321 g~~~~~~~~~~~ 332 (461)
|+++++++.+++
T Consensus 321 g~~~~~~~~~~~ 332 (360)
T 3t34_A 321 GKPIAHGTDSRV 332 (360)
T ss_dssp ------------
T ss_pred CCCCCCCHHHHH
Confidence 999987765443
No 4
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=100.00 E-value=1e-49 Score=401.23 Aligned_cols=338 Identities=51% Similarity=0.815 Sum_probs=306.5
Q ss_pred hhhhHHHHHHHHHHHHHHhccCCCCCCccCCCCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCC
Q 012559 3 TMTSLIGLINKIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEG 82 (461)
Q Consensus 3 ~~~~l~~~~~~lq~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~ 82 (461)
+|++|++++|+|||.+..+|... ..++|+|+|||.+|||||||+|+|+|.+|+|+++++||++|+++++.+.+
T Consensus 5 ~~~~l~~~~~~l~d~l~~~g~~~------~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~- 77 (353)
T 2x2e_A 5 SMEDLIPLVNRLQDAFSAIGQNA------DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNAT- 77 (353)
T ss_dssp -CCSCHHHHHHHHHHHHTTTCGG------GCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECS-
T ss_pred hHHHHHHHHHHHHHHHHHcCCCC------CCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCC-
Confidence 58999999999999999987542 25899999999999999999999999999999999999999999998764
Q ss_pred CCcchhhhcCCCCcccChHHHHHHHHHHhhhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHH
Q 012559 83 GTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDI 162 (461)
Q Consensus 83 ~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i 162 (461)
.+|+.|.+.+++.++++..+..+++..+..+.|.+.+++.+.+.+++++|+..+++||||||+.+.+.++|+.++.+.+
T Consensus 78 -~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~ 156 (353)
T 2x2e_A 78 -TEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQI 156 (353)
T ss_dssp -SCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHH
T ss_pred -ccceeeeecCCcccCCHHHHHHHHHHHHHHhcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHH
Confidence 5899999999999999999999999988888888899999999999999999999999999999988888888888889
Q ss_pred HHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCccCCCccHHHHHhCcccccCCCeeEEEe
Q 012559 163 ENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVN 242 (461)
Q Consensus 163 ~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~ 242 (461)
..++..|+.+++++||+|++++.++.++++..+++.+++.+.|+++|+||+|+++++.++.+++++....+++||+.+++
T Consensus 157 ~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~ 236 (353)
T 2x2e_A 157 RDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVN 236 (353)
T ss_dssp HHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCC
T ss_pred HHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEe
Confidence 99999999999999999999999999999888999999999999999999999987766677777777788899999999
Q ss_pred CChhhhcccccHHHHHHHHHhhhccCCCCccchhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCC
Q 012559 243 RSQADINKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERVIRQRIPSIIALINKNIDEINAELDRIGR 322 (461)
Q Consensus 243 ~s~~~~~~~~~~~~~~~~E~~ff~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~~L~~lg~ 322 (461)
+|+++.....+.......|.+||++++.|+....++|+..|++.|++.|..|+++++|++..+++..+..++.++.+++.
T Consensus 237 ~SA~~~~~i~~l~~~l~~e~~~f~~~~~~~~~~~r~~~~~l~~~l~e~l~~~i~~~lP~l~~~i~~~~~~~~~~l~~~~~ 316 (353)
T 2x2e_A 237 RSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVEEYKN 316 (353)
T ss_dssp CCHHHHHTTCCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccccccHHHHHHHHHHHhccCCcccccHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 99987665566666777899999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCChhHH--HHHHHHHHHHHHHHHHH
Q 012559 323 PIGVDSGAQ--LYTILEMCRAFERVFKE 348 (461)
Q Consensus 323 ~~~~~~~~~--~~~l~~~~~~f~~~~~~ 348 (461)
.++.++..+ ++++++++++|++.|..
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 344 (353)
T 2x2e_A 317 FRPDKHGTDSRVDEMLRMYHALKEALSI 344 (353)
T ss_dssp HCCCSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchhhhhHHHHHHHHHHHHHHHHHH
Confidence 877665443 48899999999999865
No 5
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=100.00 E-value=2e-41 Score=334.96 Aligned_cols=309 Identities=51% Similarity=0.822 Sum_probs=241.9
Q ss_pred hhHHHHHHHHHHHHHHhccCCCCCCccCCCCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecC---
Q 012559 5 TSLIGLINKIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTE--- 81 (461)
Q Consensus 5 ~~l~~~~~~lq~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~--- 81 (461)
|+||+++|+||++++.+|... .++|+|+|+|.+|||||||+|+|+|.+++|++.++||++|+++++.+.+
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~-------~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~ 73 (315)
T 1jwy_B 1 DQLIPVINKLQDVFNTLGSDP-------LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIAD 73 (315)
T ss_dssp CCHHHHHHHHHHHTTTSSSCT-------TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCT
T ss_pred CchHHHHHHHHHHHHHcCCCC-------CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcc
Confidence 579999999999999887541 5899999999999999999999999999999999999999999988863
Q ss_pred ---CCCcchhhhcCCCCcccChHHHHHHHHHHhhhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccH
Q 012559 82 ---GGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESI 158 (461)
Q Consensus 82 ---~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~ 158 (461)
....|+++.+.++..+.++.++.+++...+..+.|.+.+++.+++.+++++|+..+++||||||+.+.+..+++..+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~ 153 (315)
T 1jwy_B 74 DGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDI 153 (315)
T ss_dssp TSCCCCCEEEESSSTTCCBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CS
T ss_pred cccchhhhhhhhcccccccCCHHHHHHHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhH
Confidence 34788999999999999999999999999888888888999999999999999999999999999876655666777
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCccCCCccHHHHHhCcccccCCCee
Q 012559 159 VEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWV 238 (461)
Q Consensus 159 ~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~ 238 (461)
.+.+..++..|+.++|++|+++.+++.++..++...+++.+++.+.|+++|+||+|+.++...+.+.+++....++.+|+
T Consensus 154 ~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 233 (315)
T 1jwy_B 154 EQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFI 233 (315)
T ss_dssp HHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeE
Confidence 78889999999999998888887777777766666788999988999999999999997765566777654456668999
Q ss_pred EEEeCChhhhcccccHHHHHHHHHhhhccCCCCccchhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 012559 239 GIVNRSQADINKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERVIRQRIPSIIALINKNIDEINAELD 318 (461)
Q Consensus 239 ~v~~~s~~~~~~~~~~~~~~~~E~~ff~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~~L~ 318 (461)
.+.+.|+.+++.+.........+..||...++|..+..+.|+..|...+++.+..++++++|++..+++..+.+++++|.
T Consensus 234 ~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lre~l~~~~~~elP~~~~~i~~~l~~~~~~l~ 313 (315)
T 1jwy_B 234 GVINRSQEDIIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKVKVSKMLSDVQGELS 313 (315)
T ss_dssp ECCCCCHHHHSSSCCHHHHHHHHHHHHHTCTTGGGSGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------
T ss_pred EEecCChhhhccCCCHHHHHHHHHHHHhCCCccccchhccCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999998876666666666677888988888888778899999999999999999999999999999999999999987
Q ss_pred Hh
Q 012559 319 RI 320 (461)
Q Consensus 319 ~l 320 (461)
+|
T Consensus 314 ~~ 315 (315)
T 1jwy_B 314 TY 315 (315)
T ss_dssp --
T ss_pred hC
Confidence 64
No 6
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=100.00 E-value=6.6e-40 Score=321.43 Aligned_cols=298 Identities=56% Similarity=0.898 Sum_probs=260.8
Q ss_pred hhhHHHHHHHHHHHHHHhccCCCCCCccCCCCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCC
Q 012559 4 MTSLIGLINKIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGG 83 (461)
Q Consensus 4 ~~~l~~~~~~lq~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~ 83 (461)
|++|++++++|+|.+..++... ..++|+|+|||.+|||||||+|+|+|.+++|++.++||++|+++++.+..
T Consensus 1 ~~~~~~~~~~l~~~l~~~~~~~------~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~-- 72 (299)
T 2aka_B 1 MEDLIPLVNRLQDAFSAIGQNA------DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNST-- 72 (299)
T ss_dssp CTTHHHHHHHHHHHHTTSCCCT------TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECS--
T ss_pred CHHHHHHHHHHHHHHHhcCCCC------CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCC--
Confidence 7999999999999999887532 24789999999999999999999999999999999999999999998765
Q ss_pred CcchhhhcCCCCcccChHHHHHHHHHHhhhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHH
Q 012559 84 TDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIE 163 (461)
Q Consensus 84 ~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~ 163 (461)
.+|+++.+..+..+++++.+...++..+..+.|.+.+++.+.+.+++++|+..+++||||||+.+....+++.+....+.
T Consensus 73 ~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~ 152 (299)
T 2aka_B 73 TEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIR 152 (299)
T ss_dssp SCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHH
T ss_pred cccchhhhcCCcccCCHHHHHHHHHHHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHH
Confidence 47888888888889999999988888777888888899999999999999989999999999998766666777777789
Q ss_pred HHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCccCCCccHHHHHhCcccccCCCeeEEEeC
Q 012559 164 NMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNR 243 (461)
Q Consensus 164 ~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~ 243 (461)
.++..|+.+++++||+|++++.++..++...+++.+++.+.|+++|+||+|+.+++....+.+++....++.||..+++.
T Consensus 153 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 232 (299)
T 2aka_B 153 DMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNR 232 (299)
T ss_dssp HHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCC
T ss_pred HHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECC
Confidence 99999999999989899999988888887778999999999999999999999776555667765555666789999999
Q ss_pred ChhhhcccccHHHHHHHHHhhhccCCCCccchhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 012559 244 SQADINKNVDMIAARRKEREYFETSPEYGHLASKMGSEYLAKLLSQHLERVIRQRIPSIIALINKN 309 (461)
Q Consensus 244 s~~~~~~~~~~~~~~~~E~~ff~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~ 309 (461)
|++......+.......|.+||+..+.|.....++|+..|.+.|++.+..++++++|++..+++.+
T Consensus 233 SA~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~l~~~l~~~l~~~~~~~lP~~~~~i~~~ 298 (299)
T 2aka_B 233 SQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQ 298 (299)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhccccccHHHHHHHHHHHHhcCCccccchhhhCHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Confidence 988644444555666779999999999999999999999999999999999999999999998765
No 7
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.80 E-value=3.4e-18 Score=185.38 Aligned_cols=172 Identities=19% Similarity=0.254 Sum_probs=113.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHH---HHH
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEI---SDE 110 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i---~~~ 110 (461)
+.++|+|+|.+|+|||||+|+|+|.+++|++..++|++|+++.+..... ....+.+.......++..+...+ .+.
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~--~t~~~~~g~~~~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKK--VTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCE--EEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCe--EEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence 4578999999999999999999999999999999999999887642211 01101010000111222221110 001
Q ss_pred hhhhcCCCCcccCccEEEEEecCCC---CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcc
Q 012559 111 TDRITGKSKQISNIPIQLSIYSPNV---VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI 187 (461)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~p~~---~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~ 187 (461)
.......+.........++++.|.. .+++||||||+..... ....+..|+.++| ++|+|++++...
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~----------~~~~~~~~i~~aD-~vL~Vvda~~~~ 214 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA----------RNELSLGYVNNCH-AILFVMRASQPC 214 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT----------CHHHHTHHHHSSS-EEEEEEETTSTT
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh----------HHHHHHHHHHhCC-EEEEEEeCCCcc
Confidence 1111222334455667778887764 5899999999876421 1567889999999 567777777766
Q ss_pred ccHHHHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 188 ATSDAIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 188 ~~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
+..+...+.+.+...+.|+++|+||+|+..+
T Consensus 215 s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 215 TLGERRYLENYIKGRGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp CHHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred chhHHHHHHHHHHhhCCCEEEEEECcccccc
Confidence 6655544445667678899999999999854
No 8
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.77 E-value=4.2e-19 Score=174.61 Aligned_cols=241 Identities=20% Similarity=0.255 Sum_probs=140.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHhhCCCCCccCCC-ccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHh
Q 012559 33 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDET 111 (461)
Q Consensus 33 ~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~ 111 (461)
.....|+++|.+|||||||+|+|+|.++...+.. .+|+...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~-------------------------------------- 49 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRV-------------------------------------- 49 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCE--------------------------------------
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEE--------------------------------------
Confidence 3678899999999999999999999987322221 1222221
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH
Q 012559 112 DRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD 191 (461)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~ 191 (461)
.+ ....+...+++||||||+.+... ...+.+.+...+..|+..+|+ +++|++++......+
T Consensus 50 ---~~------------~~~~~~~~~i~lvDTPG~~~~~~---~~~l~~~~~~~~~~~l~~aD~-il~VvD~~~~~~~~~ 110 (308)
T 3iev_A 50 ---LG------------VKNIPNEAQIIFLDTPGIYEPKK---SDVLGHSMVEIAKQSLEEADV-ILFMIDATEGWRPRD 110 (308)
T ss_dssp ---EE------------EEEETTTEEEEEEECCCCCCCCT---TCHHHHHHHHHHHHHHHHCSE-EEEEEETTTBSCHHH
T ss_pred ---EE------------EEecCCCCeEEEEECcCCCcccc---chhHHHHHHHHHHHHhhcCCE-EEEEEeCCCCCCchh
Confidence 11 11122146799999999987531 245667778889999999995 556666665554444
Q ss_pred HHHHHHHhCCCCCceEEEeccCCccCCCccHHHHHhCcccccCC-CeeEEEeCChh---hhcccccHHHHHHHHHhhhcc
Q 012559 192 AIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQH-PWVGIVNRSQA---DINKNVDMIAARRKEREYFET 267 (461)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~-g~~~v~~~s~~---~~~~~~~~~~~~~~E~~ff~~ 267 (461)
...+++.+...+.|+++|+||+|+.+........+. .+...+ .+..+++.|+. ++++.++.+.....+..++++
T Consensus 111 ~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~--~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~~~~~~ 188 (308)
T 3iev_A 111 EEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLID--EIHKKHPELTEIVPISALKGANLDELVKTILKYLPEGEPLFP 188 (308)
T ss_dssp HHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHH--HHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCBCCCSSC
T ss_pred HHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHH--HHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCccCCCCCC
Confidence 332266666667899999999999843333333322 111112 23345555554 444444444443333334443
Q ss_pred CCCCccchhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--HHHHHhCCCCCCChhHHHHHH
Q 012559 268 SPEYGHLASKMGSEYLAKLLSQHLERVIRQRIPSIIALINKNIDEIN--AELDRIGRPIGVDSGAQLYTI 335 (461)
Q Consensus 268 ~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~--~~L~~lg~~~~~~~~~~~~~l 335 (461)
.....+.+.+. ...+.+++.+...+++++|+..+.....+++.+ ..+..+...+...+++|+.++
T Consensus 189 ~~~~td~~~~~---~~~e~irek~~~~~~~eiP~~~~v~i~~~~~~~~~~~~~~i~a~i~ve~~~~k~i~ 255 (308)
T 3iev_A 189 EDMITDLPLRL---LAAEIVREKAMMLTREEVPTSIAVKINEIKPGDANPNMLVIKGEIIVDRENLKPII 255 (308)
T ss_dssp TTCCBCCCHHH---HHHHHHHHHHHHTCCTTHHHHCEEEEEEEEECSSCTTSEEEEEEEEESSGGGHHHH
T ss_pred cccccCCCHHH---HHHHHHHHHHHhhhhhhcCCeeEEEeEEEEEccCCCCeEEEEEEEEEccCCcceEE
Confidence 33333333333 456777888888889999997655433333211 112223333334455666554
No 9
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.76 E-value=1.2e-18 Score=170.75 Aligned_cols=234 Identities=19% Similarity=0.213 Sum_probs=138.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCC-ccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~ 112 (461)
+.+.|++||.+|+|||||+|+|+|.++.+.+.. .+||...
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i--------------------------------------- 46 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRL--------------------------------------- 46 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCE---------------------------------------
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEE---------------------------------------
Confidence 567899999999999999999999987332221 1222221
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHH
Q 012559 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (461)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~ 192 (461)
.+ +...+..++.||||||+.+. ...+.+.+...+..|++.+|+ +++|++++..+...+
T Consensus 47 --~~-------------i~~~~~~~l~l~DTpG~~~~-----~~~l~~~~~~~~~~~l~~ad~-il~VvD~~~~~~~~~- 104 (301)
T 1wf3_A 47 --RG-------------ILTEGRRQIVFVDTPGLHKP-----MDALGEFMDQEVYEALADVNA-VVWVVDLRHPPTPED- 104 (301)
T ss_dssp --EE-------------EEEETTEEEEEEECCCCCCC-----CSHHHHHHHHHHHHHTSSCSE-EEEEEETTSCCCHHH-
T ss_pred --EE-------------EEEeCCcEEEEecCccccch-----hhHHHHHHHHHHHHHHhcCCE-EEEEEECCCCCChHH-
Confidence 11 22223468999999999874 234556678889999999995 556666665544433
Q ss_pred HHHHHHhCCC--CCceEEEeccCCccCCCccHHHHHhCcccccCCCeeEEEeCChh---hhcccccHHHHHHHHHhhhcc
Q 012559 193 IKLAREVDPT--GERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQA---DINKNVDMIAARRKEREYFET 267 (461)
Q Consensus 193 l~l~~~~d~~--~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~---~~~~~~~~~~~~~~E~~ff~~ 267 (461)
..+.+.+... +.|+++|+||+|+........+.++ .+ .++..+++.|+. +++..++.+.....+.+++++
T Consensus 105 ~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~--~~---~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~~~~~y~ 179 (301)
T 1wf3_A 105 ELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYH--EL---LPEAEPRMLSALDERQVAELKADLLALMPEGPFFYP 179 (301)
T ss_dssp HHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHH--HT---STTSEEEECCTTCHHHHHHHHHHHHTTCCBCCCSSC
T ss_pred HHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHH--Hh---cCcCcEEEEeCCCCCCHHHHHHHHHHhcccCCCCCC
Confidence 2344445443 6899999999999854321333333 12 455567777765 333333333332233344444
Q ss_pred CCCC-ccchhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHH
Q 012559 268 SPEY-GHLASKMGSEYLAKLLSQHLERVIRQRIPSIIALINKNIDEINAELDRIGRPIGVDSGAQLYTIL 336 (461)
Q Consensus 268 ~~~~-~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~~L~~lg~~~~~~~~~~~~~l~ 336 (461)
...+ ++.+.++ ...+.+++.+.+.+.+++|+........+++.++....+...+...+++|..++.
T Consensus 180 ~~~~~td~~~~~---~~~e~~Re~~~~~l~~eiP~~~~v~i~~~~~~~~~~~~i~~~i~ve~~~~k~iii 246 (301)
T 1wf3_A 180 EDYAKSDQTFGE---WVAEILREEAMKRLWHEVPYAVATKVEEVAERENGVLYIKAILYVERPSQKAIVI 246 (301)
T ss_dssp TTCCSBSSCHHH---HHHHHHHHHHHHTCCTTHHHHCEEEEEEEEEETTTEEEEEEEEEESSHHHHHHHH
T ss_pred cccccCCCCHHH---HHHHHHHHHHHHHhhcccCceEEEEEEEEEecCCCeEEEEEEEEEeeCCceEEEE
Confidence 4334 4444443 3556777888888999999976644433332111111122223344556665553
No 10
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle, antiviral protein; 2.40A {Homo sapiens}
Probab=99.73 E-value=4.5e-18 Score=161.73 Aligned_cols=129 Identities=12% Similarity=0.187 Sum_probs=103.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCc---cCCchhHhhhhchhHHHhccCCcccccc----hhhHHHHHHhhcCCCCCC
Q 012559 328 SGAQLYTILEMCRAFERVFKEHLDGGR---AGGDRIYGVFDHQLPAALKKLPFDRHLS----TRNVQKVVSEADGYQPHL 400 (461)
Q Consensus 328 ~~~~~~~l~~~~~~f~~~~~~~i~g~~---~gg~~i~~~f~~~~~~~~~~~~~~~~~~----~~~i~~~i~~~~g~~p~~ 400 (461)
...+..+|++.++.|++.+.+++.|+. .|+.|++..+++.|.+|...++-..... .++|....++++|++++.
T Consensus 3 ~~e~~~FLidkI~~F~~di~~l~~Gee~~~~~~~rlf~~lr~eF~~w~~~l~~~~~~~~~~i~~ev~~~e~~~rGrELPg 82 (271)
T 3ljb_A 3 ENEKMFFLIDKVNAFNQDITALMQGEETVGEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQYRGRELPG 82 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCceecccCCcchHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHccCcccCC
Confidence 346778999999999999999999986 3567999999999999987765322222 367777888999999999
Q ss_pred CCChHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHhhhhhhccchHhHHHHhc
Q 012559 401 IAPEQGYRRLIDGSISYFKGPAEASVDAVHFVLKELVRKSIAETEQQKLWKNFVMKAG 458 (461)
Q Consensus 401 ~~pe~~f~~li~~~i~~l~~P~~~c~~~v~~~l~~~v~~~~~~~~~~~rfp~l~~~~~ 458 (461)
|+|+.+|+.||++||++|++||++|++.|++++.+++.++.. ++|.|||+|++++.
T Consensus 83 Fv~y~aFE~lVk~qI~~LeePAl~cl~~V~e~l~~~~~~i~~--~~F~rFpnL~~~i~ 138 (271)
T 3ljb_A 83 FVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSI--KNFEEFFNLHRTAK 138 (271)
T ss_dssp CTTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH--HHHTTSHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHH
Confidence 999999999999999999999999999999999999988764 58999999999875
No 11
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.68 E-value=9.9e-18 Score=164.27 Aligned_cols=204 Identities=18% Similarity=0.251 Sum_probs=121.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCc-cccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI-VTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~-~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~ 112 (461)
+.+.|++||.+|+|||||+|+|+|..+.+.+... +||...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~--------------------------------------- 47 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRI--------------------------------------- 47 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCE---------------------------------------
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeE---------------------------------------
Confidence 5678999999999999999999999763322111 222211
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCC-ccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH
Q 012559 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLT-KVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD 191 (461)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~-~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~ 191 (461)
.| +...+..+++|+||||+. ... ..+.+.+...+..++..+|. +++|+++.. +...+
T Consensus 48 --~g-------------i~~~~~~~i~~iDTpG~~~~~~-----~~l~~~~~~~~~~~l~~~D~-vl~Vvd~~~-~~~~~ 105 (301)
T 1ega_A 48 --VG-------------IHTEGAYQAIYVDTPGLHMEEK-----RAINRLMNKAASSSIGDVEL-VIFVVEGTR-WTPDD 105 (301)
T ss_dssp --EE-------------EEEETTEEEEEESSSSCCHHHH-----HHHHHHHTCCTTSCCCCEEE-EEEEEETTC-CCHHH
T ss_pred --EE-------------EEEECCeeEEEEECcCCCccch-----hhHHHHHHHHHHHHHhcCCE-EEEEEeCCC-CCHHH
Confidence 11 222234578999999987 321 12222233345677788885 556666654 55444
Q ss_pred HHHHHHHhCCCCCceEEEeccCCccCCCccHHHHHhCcccccCCCeeEEEeCChhhhcccccHHHHHH----HHHhhhcc
Q 012559 192 AIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARR----KEREYFET 267 (461)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~----~E~~ff~~ 267 (461)
. .+++.+...+.|.++|+||+|+........+.+. .+...+|+..+++.|+.. ..+++.+.... .+.+++++
T Consensus 106 ~-~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~--~l~~~~~~~~~i~iSA~~-g~~v~~l~~~i~~~l~~~~~~~~ 181 (301)
T 1ega_A 106 E-MVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQ--FLASQMNFLDIVPISAET-GLNVDTIAAIVRKHLPEATHHFP 181 (301)
T ss_dssp H-HHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHH--HHHTTSCCSEEEECCTTT-TTTHHHHHHHHHTTCCBCCCSSC
T ss_pred H-HHHHHHHhcCCCEEEEEECcccCccHHHHHHHHH--HHHHhcCcCceEEEECCC-CCCHHHHHHHHHHhCCcCCCCCC
Confidence 3 4666666668999999999999863223333333 233345665677777754 23333333222 23344444
Q ss_pred CCCCccchhccchHHHHHHHHHHHHHHHHHhhHHHHHH
Q 012559 268 SPEYGHLASKMGSEYLAKLLSQHLERVIRQRIPSIIAL 305 (461)
Q Consensus 268 ~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~ 305 (461)
.....+.+.++ ...+.+.+.+.+.+.+++|+....
T Consensus 182 ~~~~~d~~~~~---~~~e~~re~l~~~l~~e~p~~~~v 216 (301)
T 1ega_A 182 EDYITDRSQRF---MASEIIREKLMRFLGAELPYSVTV 216 (301)
T ss_dssp TTCCSCCSHHH---HHHHHHHHHHHHHHGGGCCTTEEE
T ss_pred ccccCCCCHHH---HHHHHHHHHHHHHhCCCCCeEEEE
Confidence 43444444433 345667777888888888876443
No 12
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.57 E-value=3.9e-15 Score=142.34 Aligned_cols=126 Identities=17% Similarity=0.194 Sum_probs=78.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCc--cccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI--VTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDET 111 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~--~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~ 111 (461)
..+.|+|+|.+|||||||+|+|+|...++.+... +|+.....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~------------------------------------ 64 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKS------------------------------------ 64 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEE------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEE------------------------------------
Confidence 5679999999999999999999998865544332 33332200
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH
Q 012559 112 DRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD 191 (461)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~ 191 (461)
....+..++.||||||+.+.... .....+.+...+..+++.+|++| +|.++.. +...+
T Consensus 65 ------------------~~~~~~~~i~iiDTpG~~~~~~~--~~~~~~~i~~~~~~~~~~~d~il-~V~d~~~-~~~~~ 122 (260)
T 2xtp_A 65 ------------------QGSWGNREIVIIDTPDMFSWKDH--CEALYKEVQRCYLLSAPGPHVLL-LVTQLGR-YTSQD 122 (260)
T ss_dssp ------------------EEEETTEEEEEEECCGGGGSSCC--CHHHHHHHHHHHHHHTTCCSEEE-EEEETTC-CCHHH
T ss_pred ------------------EEEeCCCEEEEEECcCCCCCCCC--HHHHHHHHHHHHHhcCCCCcEEE-EEEeCCC-CCHHH
Confidence 11112356899999999875321 22222344566677889999655 4555543 33322
Q ss_pred --HHHHHHHhCCC--CCceEEEec-cCCccC
Q 012559 192 --AIKLAREVDPT--GERTFGVLT-KLDLMD 217 (461)
Q Consensus 192 --~l~l~~~~d~~--~~rti~Vlt-K~D~~~ 217 (461)
....+.++... +.+.++|+| |+|+.+
T Consensus 123 ~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~ 153 (260)
T 2xtp_A 123 QQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG 153 (260)
T ss_dssp HHHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred HHHHHHHHHHhCchhhccEEEEEEcccccCC
Confidence 22334443221 467888888 999984
No 13
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.56 E-value=2.6e-15 Score=143.56 Aligned_cols=123 Identities=16% Similarity=0.247 Sum_probs=79.0
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCC-ccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
.|+|+++|.+|||||||+|+|+|..+ ..+.- .+|.-.
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~~~-~v~~~pg~Tv~~----------------------------------------- 38 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNANQ-RVGNWPGVTVEK----------------------------------------- 38 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTTSE-EEEECTTSSSEE-----------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC-CccCCCCceEEE-----------------------------------------
Confidence 38999999999999999999999864 21111 111111
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHh--cCCCeEEEEEecCCCccccHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYV--EKPSCIILAISPANQDIATSD 191 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi--~~~~~iIL~V~~a~~d~~~~~ 191 (461)
..-. +.. +...+.||||||+.+....++..... +.+...|+ .++|++ ++|++++. ...
T Consensus 39 ----------~~~~--~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~---e~i~~~~~~~~~~d~v-i~VvDas~---~~~ 98 (256)
T 3iby_A 39 ----------KTGE--FLL-GEHLIEITDLPGVYSLVANAEGISQD---EQIAAQSVIDLEYDCI-INVIDACH---LER 98 (256)
T ss_dssp ----------EEEE--EEE-TTEEEEEEECCCCSSCC------CHH---HHHHHHHHHHSCCSEE-EEEEEGGG---HHH
T ss_pred ----------EEEE--EEE-CCeEEEEEeCCCcccccccccCCCHH---HHHHHHHHhhCCCCEE-EEEeeCCC---chh
Confidence 0001 111 12478999999998864221111333 45777888 889964 45555553 344
Q ss_pred HHHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 192 AIKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
.+.+...+...+.|+++|+||+|+....
T Consensus 99 ~~~l~~~l~~~~~pvilv~NK~Dl~~~~ 126 (256)
T 3iby_A 99 HLYLTSQLFELGKPVVVALNMMDIAEHR 126 (256)
T ss_dssp HHHHHHHHTTSCSCEEEEEECHHHHHHT
T ss_pred HHHHHHHHHHcCCCEEEEEEChhcCCcC
Confidence 5567778888899999999999997543
No 14
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.53 E-value=1.8e-14 Score=133.95 Aligned_cols=129 Identities=22% Similarity=0.308 Sum_probs=84.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCC-ccCCC-ccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFL-PRGSG-IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDET 111 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~l-P~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~ 111 (461)
..|+|+|+|.+|+|||||+|+|+|..++ ..+.. .+|+.+
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~--------------------------------------- 68 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHI--------------------------------------- 68 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCE---------------------------------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccce---------------------------------------
Confidence 5799999999999999999999998632 11111 112111
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCe--EEEEEecCCCcccc
Q 012559 112 DRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSC--IILAISPANQDIAT 189 (461)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~--iIL~V~~a~~d~~~ 189 (461)
....+.......++||||||+..... +....+.+..++..|+...+. ++++|+++...+..
T Consensus 69 --------------~~~~~~~~~~~~~~l~DtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~ 131 (223)
T 4dhe_A 69 --------------NYFSVGPAAEPVAHLVDLPGYGYAEV---PGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTE 131 (223)
T ss_dssp --------------EEEEESCTTSCSEEEEECCCCCSSCC---CSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH
T ss_pred --------------EEEEecCCCCCcEEEEcCCCCCcccC---ChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCH
Confidence 11122223447899999999876432 233455567788888876332 46667777655443
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 190 SDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 190 ~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
.+ ..+.+.+...+.|+++|+||+|+.+..
T Consensus 132 ~~-~~~~~~l~~~~~p~i~v~nK~Dl~~~~ 160 (223)
T 4dhe_A 132 LD-RRMIEWFAPTGKPIHSLLTKCDKLTRQ 160 (223)
T ss_dssp HH-HHHHHHHGGGCCCEEEEEECGGGSCHH
T ss_pred HH-HHHHHHHHhcCCCEEEEEeccccCChh
Confidence 33 335566655678999999999998643
No 15
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.50 E-value=4.8e-14 Score=134.02 Aligned_cols=127 Identities=18% Similarity=0.213 Sum_probs=72.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCc--cccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI--VTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDET 111 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~--~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~ 111 (461)
.-.+|++||.+|+|||||+|+|+|..++..+... +|+.+....
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~----------------------------------- 64 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGS----------------------------------- 64 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEE-----------------------------------
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEE-----------------------------------
Confidence 4568999999999999999999999876544332 444443111
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH
Q 012559 112 DRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD 191 (461)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~ 191 (461)
...+...++||||||+.+..... .+.....+......+...+|+ +|+|++++. +...+
T Consensus 65 -------------------~~~~~~~i~liDTPG~~~~~~~~-~~~~~~~i~~~~~~~~~~~d~-il~V~d~~~-~~~~~ 122 (247)
T 3lxw_A 65 -------------------RRWDKCHVEVVDTPDIFSSQVSK-TDPGCEERGHCYLLSAPGPHA-LLLVTQLGR-FTAQD 122 (247)
T ss_dssp -------------------EEETTEEEEEEECCSCSSTTHHH-HSTTSHHHHHHHHHHTTCCSE-EEEEEETTB-CCHHH
T ss_pred -------------------EEECCcEEEEEECCCCCCCCCCc-HHHHHHHHHHHHHhcCCCCCE-EEEEEeCCC-CCHHH
Confidence 11123568999999998642110 011111222222333488885 555556553 33322
Q ss_pred --HHHHHHHh-CC--CCCceEEEeccCCccC
Q 012559 192 --AIKLAREV-DP--TGERTFGVLTKLDLMD 217 (461)
Q Consensus 192 --~l~l~~~~-d~--~~~rti~VltK~D~~~ 217 (461)
.++.++++ .+ .+.++|+|.||.|+.+
T Consensus 123 ~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~ 153 (247)
T 3lxw_A 123 QQAVRQVRDMFGEDVLKWMVIVFTRKEDLAG 153 (247)
T ss_dssp HHHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred HHHHHHHHHHhChhhhccEEEEEEchHhcCC
Confidence 33344443 22 1578999999999965
No 16
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.50 E-value=1.3e-13 Score=124.64 Aligned_cols=126 Identities=21% Similarity=0.197 Sum_probs=79.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCc-cccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHh
Q 012559 33 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI-VTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDET 111 (461)
Q Consensus 33 ~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~-~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~ 111 (461)
...|+|+|+|.+|+|||||+|+|+|..+.+.+... +|+.+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~-------------------------------------- 62 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSIN-------------------------------------- 62 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEE--------------------------------------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeE--------------------------------------
Confidence 36789999999999999999999998742221111 111110
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCC--eEEEEEecCCCcccc
Q 012559 112 DRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPS--CIILAISPANQDIAT 189 (461)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~--~iIL~V~~a~~d~~~ 189 (461)
.. .....+.++||||+..... +....+....+...|+...+ .++++|+++......
T Consensus 63 ------------------~~-~~~~~~~i~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~ 120 (195)
T 3pqc_A 63 ------------------FY-LVNSKYYFVDLPGYGYAKV---SKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQD 120 (195)
T ss_dssp ------------------EE-EETTTEEEEECCCBSSSCC---CHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH
T ss_pred ------------------EE-EECCcEEEEECCCCccccC---ChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCH
Confidence 00 0124688999999765321 22233445677778887652 246666676654443
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 190 SDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 190 ~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
... .+.+.+...+.|+++|+||+|+.++.
T Consensus 121 ~~~-~~~~~~~~~~~p~i~v~nK~Dl~~~~ 149 (195)
T 3pqc_A 121 SDL-MMVEWMKSLNIPFTIVLTKMDKVKMS 149 (195)
T ss_dssp HHH-HHHHHHHHTTCCEEEEEECGGGSCGG
T ss_pred HHH-HHHHHHHHcCCCEEEEEEChhcCChH
Confidence 332 34444444578999999999998543
No 17
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.49 E-value=2.4e-14 Score=147.48 Aligned_cols=162 Identities=17% Similarity=0.266 Sum_probs=90.9
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
+|.|++||.+|+|||||+|+|+|.++ .++...|.
T Consensus 1 ~~~v~ivG~pnvGKStL~nrl~~~~~-----~~v~~~~g----------------------------------------- 34 (439)
T 1mky_A 1 MATVLIVGRPNVGKSTLFNKLVKKKK-----AIVEDEEG----------------------------------------- 34 (439)
T ss_dssp -CEEEEECCTTSSHHHHHHHHHC---------------------------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-----ceecCCCC-----------------------------------------
Confidence 48999999999999999999999864 22222221
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHH
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 194 (461)
++.+.+.-.+.. +...+.+|||||+.... ...+.+.+...+..|++++|. +++|+|+...++..+. .
T Consensus 35 ------~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~----~~~~~~~~~~~~~~~~~~ad~-il~V~D~~~~~~~~d~-~ 101 (439)
T 1mky_A 35 ------VTRDPVQDTVEW-YGKTFKLVDTCGVFDNP----QDIISQKMKEVTLNMIREADL-VLFVVDGKRGITKEDE-S 101 (439)
T ss_dssp ---------CCSEEEEEE-TTEEEEEEECTTTTSSG----GGCCCHHHHHHHHHHHTTCSE-EEEEEETTTCCCHHHH-H
T ss_pred ------CccceeeEEEEE-CCeEEEEEECCCccccc----cchHHHHHHHHHHHHHHhCCE-EEEEEECCCCCCHHHH-H
Confidence 000110011111 22468999999997642 122345567889999999995 5566677665544332 2
Q ss_pred HHHHhCCCCCceEEEeccCCccCC-CccH-HHHHhCcccccCC-CeeEEEeCChhhhcccccHHHHHHH
Q 012559 195 LAREVDPTGERTFGVLTKLDLMDK-GTNA-LEVLEGRSYRLQH-PWVGIVNRSQADINKNVDMIAARRK 260 (461)
Q Consensus 195 l~~~~d~~~~rti~VltK~D~~~~-~~~~-~~~l~~~~~~l~~-g~~~v~~~s~~~~~~~~~~~~~~~~ 260 (461)
+++.+...+.++++|+||+|+.+. ..+. .+. +.++. .++.+....+.++.+.++.+.....
T Consensus 102 i~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~~-----~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 102 LADFLRKSTVDTILVANKAENLREFEREVKPEL-----YSLGFGEPIPVSAEHNINLDTMLETIIKKLE 165 (439)
T ss_dssp HHHHHHHHTCCEEEEEESCCSHHHHHHHTHHHH-----GGGSSCSCEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEEeCCCCccccHHHHHHHH-----HhcCCCCEEEEeccCCCCHHHHHHHHHHhcc
Confidence 344443347899999999998643 1111 121 22333 2444444444555555555544443
No 18
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.48 E-value=1e-13 Score=143.86 Aligned_cols=156 Identities=19% Similarity=0.207 Sum_probs=90.0
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccC-CCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRG-SGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~-~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
..|+++|.+|+|||||+|+|+|.++.... ...+|+-+.+
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~---------------------------------------- 283 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVIS---------------------------------------- 283 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCC----------------------------------------
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEE----------------------------------------
Confidence 68999999999999999999998652111 1122222210
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCC-ccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLT-KVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~-~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
-.+.+ +..+++|+||||+. ..... .+..-......|+.++|. +|+|+|++.....++ .
T Consensus 284 -----------~~i~~---~g~~~~l~DTaG~~~~~~~~-----ve~~gi~~~~~~~~~aD~-vl~VvD~s~~~s~~~-~ 342 (482)
T 1xzp_A 284 -----------EEIVI---RGILFRIVDTAGVRSETNDL-----VERLGIERTLQEIEKADI-VLFVLDASSPLDEED-R 342 (482)
T ss_dssp -----------EEEEE---TTEEEEEEESSCCCSSCCTT-----CCCCCHHHHHHHHHHCSE-EEEEEETTSCCCHHH-H
T ss_pred -----------EEEec---CCeEEEEEECCCccccchhh-----HHHHHHHHHHHHhhcccE-EEEEecCCCCCCHHH-H
Confidence 11112 12468999999997 43211 110002345678999995 555666654433332 3
Q ss_pred HHHHHhCCCCCceEEEeccCCccCCCccHHHHHhCcccccCCCeeEEEeCChhhhcccccHHHH
Q 012559 194 KLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAA 257 (461)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 257 (461)
++.+.+ .+.|+|+|+||+|+.+.. +..++.+ .......++.+...+..++++.+..+..
T Consensus 343 ~il~~l--~~~piivV~NK~DL~~~~-~~~~~~~--~~~~~~~~i~iSAktg~Gi~eL~~~l~~ 401 (482)
T 1xzp_A 343 KILERI--KNKRYLVVINKVDVVEKI-NEEEIKN--KLGTDRHMVKISALKGEGLEKLEESIYR 401 (482)
T ss_dssp HHHHHH--TTSSEEEEEEECSSCCCC-CHHHHHH--HHTCSTTEEEEEGGGTCCHHHHHHHHHH
T ss_pred HHHHHh--cCCCEEEEEECccccccc-CHHHHHH--HhcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 355555 268999999999997542 2222211 1111235666666666666555555444
No 19
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.47 E-value=3.3e-14 Score=147.36 Aligned_cols=123 Identities=21% Similarity=0.264 Sum_probs=61.8
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 115 (461)
.+|+++|.+|+|||||+|+|+|.++ ..++..|.. +.+..
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~-----a~vs~~~gt-----------------------------------T~d~~- 272 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQER-----AIVSHMPGT-----------------------------------TRDYI- 272 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC-----------------------------------------------------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-----cccCCCCCc-----------------------------------eEEEE-
Confidence 5699999999999999999999865 222322210 00000
Q ss_pred CCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccH---HH
Q 012559 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DA 192 (461)
Q Consensus 116 g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~---~~ 192 (461)
...+.+ +..+++||||||+.+.. ...+...-..+..|+.++|. +++|++++...... ..
T Consensus 273 ---------~~~i~~---~g~~l~liDT~G~~~~~-----~~ve~~gi~~~~~~~~~aD~-vl~VvD~s~~~s~~~~~~~ 334 (476)
T 3gee_A 273 ---------EECFIH---DKTMFRLTDTAGLREAG-----EEIEHEGIRRSRMKMAEADL-ILYLLDLGTERLDDELTEI 334 (476)
T ss_dssp ---------CEEEEE---TTEEEEEEC-------------------------CCCSSCSE-EEEEEETTTCSSGGGHHHH
T ss_pred ---------EEEEEE---CCeEEEEEECCCCCcch-----hHHHHHHHHHHHhhcccCCE-EEEEEECCCCcchhhhHHH
Confidence 001111 22568999999997631 11121112345678889995 55566665544332 44
Q ss_pred HHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 193 IKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
..+.+.+. +.++|+|+||+|+....
T Consensus 335 ~~~l~~l~--~~piIvV~NK~Dl~~~~ 359 (476)
T 3gee_A 335 RELKAAHP--AAKFLTVANKLDRAANA 359 (476)
T ss_dssp HHHHHHCT--TSEEEEEEECTTSCTTT
T ss_pred HHHHHhcC--CCCEEEEEECcCCCCcc
Confidence 45666665 68999999999998654
No 20
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.47 E-value=1.5e-13 Score=124.57 Aligned_cols=126 Identities=25% Similarity=0.362 Sum_probs=77.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
..++|+|+|.+|+|||||+|+|+|..+.+.....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~---------------------------------------------- 55 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSK---------------------------------------------- 55 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------------------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCC----------------------------------------------
Confidence 5799999999999999999999998753211100
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCC---CeEEEEEecCCCccccH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKP---SCIILAISPANQDIATS 190 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~---~~iIL~V~~a~~d~~~~ 190 (461)
.| .+.......+ ...+.+|||||+..... +.+..+....+...|+... + ++++|.+++......
T Consensus 56 -~~----~t~~~~~~~~----~~~~~l~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~d~~~~~~~~ 122 (195)
T 1svi_A 56 -PG----KTQTLNFYII----NDELHFVDVPGYGFAKV---SKSEREAWGRMIETYITTREELK-AVVQIVDLRHAPSND 122 (195)
T ss_dssp ---------CCEEEEEE----TTTEEEEECCCBCCCSS---CHHHHHHHHHHHHHHHHHCTTEE-EEEEEEETTSCCCHH
T ss_pred -CC----ceeeEEEEEE----CCcEEEEECCCCCcccc---CHHHHHHHHHHHHHHHhhhhcCC-EEEEEEECCCCCCHH
Confidence 00 0000001111 13799999999765421 2333455677788888766 6 466666666544443
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 191 DAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
+ ..+.+.+...+.|+++|+||+|+.+..
T Consensus 123 ~-~~~~~~~~~~~~p~i~v~nK~Dl~~~~ 150 (195)
T 1svi_A 123 D-VQMYEFLKYYGIPVIVIATKADKIPKG 150 (195)
T ss_dssp H-HHHHHHHHHTTCCEEEEEECGGGSCGG
T ss_pred H-HHHHHHHHHcCCCEEEEEECcccCChH
Confidence 3 234444444678999999999998654
No 21
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.47 E-value=5.6e-14 Score=132.59 Aligned_cols=128 Identities=17% Similarity=0.244 Sum_probs=74.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCC--ccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG--IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDET 111 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~--~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~ 111 (461)
..++|+++|.+|+|||||+|+|+|..+++.+.. .+|+.+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~----------------------------------- 72 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRS----------------------------------- 72 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEE-----------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEE-----------------------------------
Confidence 568999999999999999999999987544432 2343332111
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccH-
Q 012559 112 DRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS- 190 (461)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~- 190 (461)
+. .+...++||||||+...... .....+.+...+..+...++++ |+|.+++ ++...
T Consensus 73 ------------------~~-~~~~~i~liDTpG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-l~v~d~~-~~~~~~ 129 (239)
T 3lxx_A 73 ------------------SS-WKETELVVVDTPGIFDTEVP--NAETSKEIIRCILLTSPGPHAL-LLVVPLG-RYTEEE 129 (239)
T ss_dssp ------------------EE-ETTEEEEEEECCSCC-------CHHHHHHHHHHHHHTTTCCSEE-EEEEETT-CCSSHH
T ss_pred ------------------EE-eCCceEEEEECCCccCCCCC--HHHHHHHHHHHHHhcCCCCcEE-EEEeeCC-CCCHHH
Confidence 11 12246899999999875422 2334445666677777788864 4555554 22222
Q ss_pred -HHHHHHHH-hC-CCCCceEEEeccCCccCCC
Q 012559 191 -DAIKLARE-VD-PTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 191 -~~l~l~~~-~d-~~~~rti~VltK~D~~~~~ 219 (461)
.++..+.+ +. ....++++|+||+|+.+..
T Consensus 130 ~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~ 161 (239)
T 3lxx_A 130 HKATEKILKMFGERARSFMILIFTRKDDLGDT 161 (239)
T ss_dssp HHHHHHHHHHHHHHHGGGEEEEEECGGGC---
T ss_pred HHHHHHHHHHhhhhccceEEEEEeCCccCCcc
Confidence 22222221 11 1235899999999998653
No 22
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.46 E-value=2.4e-13 Score=119.33 Aligned_cols=116 Identities=18% Similarity=0.200 Sum_probs=70.8
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 115 (461)
.+|+|+|.+|+|||||+|++++..+.+... ..+....
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~------------------------------------------ 40 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYD-PTIEDFY------------------------------------------ 40 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSCCC-TTCCEEE------------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcccCC-CCcceeE------------------------------------------
Confidence 579999999999999999999876532111 1110000
Q ss_pred CCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHH---
Q 012559 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA--- 192 (461)
Q Consensus 116 g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~--- 192 (461)
...+.+ ......+.|+||||.... ..+...|+.+++.++++ .++.........
T Consensus 41 ---------~~~~~~-~~~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~~~~i~v-~d~~~~~s~~~~~~~ 96 (167)
T 1kao_A 41 ---------RKEIEV-DSSPSVLEILDTAGTEQF-------------ASMRDLYIKNGQGFILV-YSLVNQQSFQDIKPM 96 (167)
T ss_dssp ---------EEEEEE-TTEEEEEEEEECCCTTCC-------------HHHHHHHHHHCSEEEEE-EETTCHHHHHHHHHH
T ss_pred ---------EEEEEE-CCEEEEEEEEECCCchhh-------------HHHHHHHhccCCEEEEE-EeCCCHHHHHHHHHH
Confidence 000111 111245889999996553 45677888888865544 444432221112
Q ss_pred H-HHHHHhCCCCCceEEEeccCCccCC
Q 012559 193 I-KLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 193 l-~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
. .+.+.....+.|+++|+||+|+.+.
T Consensus 97 ~~~i~~~~~~~~~piilv~nK~Dl~~~ 123 (167)
T 1kao_A 97 RDQIIRVKRYEKVPVILVGNKVDLESE 123 (167)
T ss_dssp HHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred HHHHHHhcCCCCCCEEEEEECCccccc
Confidence 1 2334444567899999999999754
No 23
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.46 E-value=2.5e-13 Score=131.00 Aligned_cols=137 Identities=18% Similarity=0.299 Sum_probs=80.0
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 115 (461)
-+|+|||.+|+|||||+|+|+|.+.++.+...++..+
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~------------------------------------------- 45 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRI------------------------------------------- 45 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC-------------------------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCccccc-------------------------------------------
Confidence 5799999999999999999999887554321111000
Q ss_pred CCCCcccCccEEEEEecC-CCCCcEEEeCCCCCccccCC-CCccHHHHHHHHHHHHhcC-------------CCeEEEEE
Q 012559 116 GKSKQISNIPIQLSIYSP-NVVNLTLIDLPGLTKVAVEG-QPESIVEDIENMVRSYVEK-------------PSCIILAI 180 (461)
Q Consensus 116 g~~~~~s~~~i~l~i~~p-~~~~l~lvDtPGi~~~~~~~-~~~~~~~~i~~~v~~yi~~-------------~~~iIL~V 180 (461)
..++..+.....+... ....++||||||+....... .-..+...+......|+.. +|++++++
T Consensus 46 --~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i 123 (274)
T 3t5d_A 46 --KKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFI 123 (274)
T ss_dssp -----CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEE
T ss_pred --CCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEe
Confidence 0011111112222211 12378999999996542211 1122333344444666664 66777777
Q ss_pred ecCCCccccHHHHHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 181 SPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 181 ~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
.++...+...+ ..+++.+.. +.|+|+|+||+|++.+.
T Consensus 124 ~~~~~~~~~~d-~~~l~~l~~-~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 124 APSGHGLKPLD-IEFMKRLHE-KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp CSCCSSCCHHH-HHHHHHHTT-TSCEEEEESSGGGSCHH
T ss_pred cCCCCCCCHHH-HHHHHHHhc-cCCEEEEEeccCCCCHH
Confidence 77765665554 347777877 89999999999998543
No 24
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.46 E-value=4.3e-14 Score=136.45 Aligned_cols=122 Identities=20% Similarity=0.300 Sum_probs=74.9
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCC-ccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
-+.|+++|.+|||||||+|+|+|..+ +++.- .+|..+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~~~g~t~~~----------------------------------------- 40 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWAGVTVER----------------------------------------- 40 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCE-EEEECTTSSSEE-----------------------------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeeEEE-----------------------------------------
Confidence 47899999999999999999999874 22211 111111
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHh--cCCCeEEEEEecCCCccccHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYV--EKPSCIILAISPANQDIATSD 191 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi--~~~~~iIL~V~~a~~d~~~~~ 191 (461)
..-.+.. ....+.||||||+.+........... +.+.+.|+ .++|.+| +|++++. ...
T Consensus 41 ------------~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~---e~i~~~~~~~~~~d~ii-~VvD~~~---~~~ 100 (274)
T 3i8s_A 41 ------------KEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLD---EQIACHYILSGDADLLI-NVVDASN---LER 100 (274)
T ss_dssp ------------EEEEEEC-SSCEEEEEECCCCSCSCC----CCHH---HHHHHHHHHHTCCSEEE-EEEEGGG---HHH
T ss_pred ------------EEEEEEe-CCCceEEEECcCCCccccccccCCHH---HHHHHHHHhhcCCCEEE-EEecCCC---hHH
Confidence 1111221 23578999999998864222122333 34556666 6888654 5555543 223
Q ss_pred HHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
.+.+...+...+.|+++|+||+|+.+.
T Consensus 101 ~~~~~~~l~~~~~p~ivv~NK~Dl~~~ 127 (274)
T 3i8s_A 101 NLYLTLQLLELGIPCIVALNMLDIAEK 127 (274)
T ss_dssp HHHHHHHHHHHTCCEEEEEECHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEECccchhh
Confidence 333444444457999999999999754
No 25
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.46 E-value=4.3e-14 Score=145.98 Aligned_cols=154 Identities=23% Similarity=0.246 Sum_probs=77.4
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 115 (461)
.+|+++|.+|+|||||+|+|+|.++ .+++..|. + +.+...
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~-----a~v~~~~g------t-----------------------------T~d~~~ 264 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDR-----AIVTDLPG------T-----------------------------TRDVVE 264 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHB-----SCCSCCTT------C-----------------------------CHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCc-----ccccCCCC------e-----------------------------eEEEEE
Confidence 4699999999999999999999765 22222221 0 000000
Q ss_pred CCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHH
Q 012559 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL 195 (461)
Q Consensus 116 g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 195 (461)
. .+.+ +..+++||||||+.+.. ...+.........++..+|. +++|++++..+...+ ..+
T Consensus 265 ~----------~i~~---~g~~v~liDT~G~~~~~-----~~ve~~gi~~~~~~~~~aD~-vl~VvD~s~~~~~~~-~~i 324 (462)
T 3geh_A 265 S----------QLVV---GGIPVQVLDTAGIRETS-----DQVEKIGVERSRQAANTADL-VLLTIDAATGWTTGD-QEI 324 (462)
T ss_dssp H----------EEEE---TTEEEEECC-------------------------CCCCSCSE-EEEEEETTTCSCHHH-HHH
T ss_pred E----------EEEE---CCEEEEEEECCccccch-----hHHHHHHHHHHhhhhhcCCE-EEEEeccCCCCCHHH-HHH
Confidence 0 0111 22568999999996531 11121112335667888885 556666665554433 345
Q ss_pred HHHhCCCCCceEEEeccCCccCCCccHHHHHhCcccccCCCeeEEEeCChhhhcccccHH
Q 012559 196 AREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMI 255 (461)
Q Consensus 196 ~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (461)
.+.+.. .|+++|+||+|+...... ..+ ..+.....++.+......++++....+
T Consensus 325 ~~~l~~--~piivV~NK~Dl~~~~~~--~~~--~~~~~~~~~i~iSAktg~Gi~eL~~~i 378 (462)
T 3geh_A 325 YEQVKH--RPLILVMNKIDLVEKQLI--TSL--EYPENITQIVHTAAAQKQGIDSLETAI 378 (462)
T ss_dssp HHHHTT--SCEEEEEECTTSSCGGGS--TTC--CCCTTCCCEEEEBTTTTBSHHHHHHHH
T ss_pred HHhccC--CcEEEEEECCCCCcchhh--HHH--HHhccCCcEEEEECCCCCCHHHHHHHH
Confidence 666643 699999999999854321 111 122223345555555544444444333
No 26
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.46 E-value=2.3e-13 Score=127.28 Aligned_cols=134 Identities=17% Similarity=0.219 Sum_probs=76.6
Q ss_pred CCCccCCCCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHH
Q 012559 27 EGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKE 106 (461)
Q Consensus 27 ~~~~~~~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~ 106 (461)
.+|......++|+|+|.+|+|||||+|+|+|..+.+.....+|+...
T Consensus 21 ~~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~--------------------------------- 67 (228)
T 2qu8_A 21 GLPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLY--------------------------------- 67 (228)
T ss_dssp -CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEE---------------------------------
T ss_pred cCCCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeee---------------------------------
Confidence 34444446789999999999999999999998762111111111111
Q ss_pred HHHHhhhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCc
Q 012559 107 ISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD 186 (461)
Q Consensus 107 i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d 186 (461)
+.........+.||||||....+.. ...... ......|...+|+ +++|.+++..
T Consensus 68 ---------------------~~~~~~~~~~~~l~DtpG~~~~~~~--~~~~~~--~~~~~~~~~~~d~-~i~v~d~~~~ 121 (228)
T 2qu8_A 68 ---------------------VGHFDHKLNKYQIIDTPGLLDRAFE--NRNTIE--MTTITALAHINGV-ILFIIDISEQ 121 (228)
T ss_dssp ---------------------EEEEEETTEEEEEEECTTTTTSCGG--GCCHHH--HHHHHHHHTSSEE-EEEEEETTCT
T ss_pred ---------------------eeeeecCCCeEEEEECCCCcCcccc--hhhhHH--HHHHHHhhccccE-EEEEEecccc
Confidence 1111112356899999999754211 111110 1223456677775 5555565543
Q ss_pred cc--cHHHHHHHHHhCCC--CCceEEEeccCCccCCC
Q 012559 187 IA--TSDAIKLAREVDPT--GERTFGVLTKLDLMDKG 219 (461)
Q Consensus 187 ~~--~~~~l~l~~~~d~~--~~rti~VltK~D~~~~~ 219 (461)
.. ......++..+... +.|+++|+||+|+.+..
T Consensus 122 ~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 158 (228)
T 2qu8_A 122 CGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMD 158 (228)
T ss_dssp TSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--
T ss_pred cCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCch
Confidence 22 23334455666543 78999999999998643
No 27
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.45 E-value=1.5e-13 Score=141.51 Aligned_cols=124 Identities=22% Similarity=0.307 Sum_probs=76.2
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
.|.|++||.+|+|||||+|+|+|..+ ..+...|.
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~-----~~v~~~~g----------------------------------------- 36 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERI-----SIVEDTPG----------------------------------------- 36 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEEC-----C------------------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc-----eeecCCCC-----------------------------------------
Confidence 58999999999999999999999765 22221211
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHH
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 194 (461)
++.+.....+ ......+.||||||+... ..++.+.+..++..|+.++|. +++|+++.......+ ..
T Consensus 37 ------~T~d~~~~~~-~~~~~~~~l~DT~G~~~~-----~~~~~~~~~~~~~~~~~~ad~-il~vvD~~~~~~~~d-~~ 102 (436)
T 2hjg_A 37 ------VTRDRIYSSA-EWLNYDFNLIDTGGIDIG-----DEPFLAQIRQQAEIAMDEADV-IIFMVNGREGVTAAD-EE 102 (436)
T ss_dssp ----------CEEEEC-TTCSSCCEEEC--------------CHHHHHHHHHHHHHHHCSE-EEEEEETTTCSCHHH-HH
T ss_pred ------CccceEEEEE-EECCceEEEEECCCCCCc-----chhHHHHHHHHHHHHHHhCCE-EEEEEeCCCCCCHHH-HH
Confidence 0011111111 122357999999999743 233666778889999999995 566667766555444 34
Q ss_pred HHHHhCCCCCceEEEeccCCccCC
Q 012559 195 LAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 195 l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
+++.+...+.|+++|+||+|+...
T Consensus 103 ~~~~l~~~~~pvilv~NK~D~~~~ 126 (436)
T 2hjg_A 103 VAKILYRTKKPVVLAVNKLDNTEM 126 (436)
T ss_dssp HHHHHTTCCSCEEEEEECCCC---
T ss_pred HHHHHHHcCCCEEEEEECccCccc
Confidence 677777778999999999999754
No 28
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.45 E-value=1.2e-13 Score=142.91 Aligned_cols=126 Identities=21% Similarity=0.291 Sum_probs=78.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhh
Q 012559 33 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (461)
Q Consensus 33 ~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~ 112 (461)
...|.|++||.+|+|||||+|+|+|..+ +.+...|.
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~-----~~v~~~~g--------------------------------------- 56 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERI-----SIVEDTPG--------------------------------------- 56 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEE-----C----------------------------------------------
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC-----cccCCCCC---------------------------------------
Confidence 4689999999999999999999999765 22211111
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHH
Q 012559 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (461)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~ 192 (461)
++.+.....+. .....+.+|||||+... .....+.+...+..|+..+|. +|+|+++...+...+
T Consensus 57 --------~t~~~~~~~~~-~~~~~~~liDT~G~~~~-----~~~~~~~~~~~~~~~~~~ad~-il~VvD~~~~~~~~d- 120 (456)
T 4dcu_A 57 --------VTRDRIYSSAE-WLNYDFNLIDTGGIDIG-----DEPFLAQIRQQAEIAMDEADV-IIFMVNGREGVTAAD- 120 (456)
T ss_dssp ------------CEEEECT-TCSSCCEEECCCC-----------CCHHHHHHHHHHHHHHCSE-EEEEEESSSCSCHHH-
T ss_pred --------cceeEEEEEEE-ECCceEEEEECCCCCCc-----chHHHHHHHHHHHhhHhhCCE-EEEEEeCCCCCChHH-
Confidence 11111111121 22368999999998742 234566778899999999995 556666766555444
Q ss_pred HHHHHHhCCCCCceEEEeccCCccCC
Q 012559 193 IKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
..+++.+...+.++++|+||+|+.+.
T Consensus 121 ~~l~~~l~~~~~pvilV~NK~D~~~~ 146 (456)
T 4dcu_A 121 EEVAKILYRTKKPVVLAVNKLDNTEM 146 (456)
T ss_dssp HHHHHHHTTCCSCEEEEEECC-----
T ss_pred HHHHHHHHHcCCCEEEEEECccchhh
Confidence 34777777789999999999998754
No 29
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.45 E-value=2.5e-13 Score=123.11 Aligned_cols=156 Identities=13% Similarity=0.160 Sum_probs=88.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+|+|.+|+|||||+|+|++..+.+......+....
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~---------------------------------------- 54 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFK---------------------------------------- 54 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEE----------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEE----------------------------------------
Confidence 4578999999999999999999998763222111111110
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---H
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---S 190 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~---~ 190 (461)
...+.+ ......+.|+||||.... ..+...|+..+|.+|+ |.+++..... .
T Consensus 55 -----------~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~ 108 (196)
T 3tkl_A 55 -----------IRTIEL-DGKTIKLQIWDTAGQERF-------------RTITSSYYRGAHGIIV-VYDVTDQESFNNVK 108 (196)
T ss_dssp -----------EEEEEE-TTEEEEEEEEEECCSGGG-------------CTTHHHHHTTCSEEEE-EEETTCHHHHHTHH
T ss_pred -----------EEEEEE-CCEEEEEEEEECCCcHhh-------------hhhHHHHHhhCCEEEE-EEECcCHHHHHHHH
Confidence 000111 111246889999996543 3456788999996554 5555432221 2
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCccCCCccHHHHHhCcccccCCCeeEEEeCChhhhcccccHH
Q 012559 191 DAIKLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMI 255 (461)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 255 (461)
.++..+....+.+.++++|+||+|+.+................+..|+.+......++++.+..+
T Consensus 109 ~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 173 (196)
T 3tkl_A 109 QWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 173 (196)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Confidence 33444555556678999999999997654211111110112233456655555544444444333
No 30
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.45 E-value=9.2e-14 Score=132.96 Aligned_cols=119 Identities=21% Similarity=0.286 Sum_probs=76.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCC-CccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~-~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~ 112 (461)
+.+.|+++|.+|+|||||+|+|+|..+. .+. ..+|..
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~pg~tv~----------------------------------------- 41 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVE----------------------------------------- 41 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEE-EEECTTSCCE-----------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCceEE-----------------------------------------
Confidence 3578999999999999999999998752 111 011111
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHh--cCCCeEEEEEecCCCccccH
Q 012559 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYV--EKPSCIILAISPANQDIATS 190 (461)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi--~~~~~iIL~V~~a~~d~~~~ 190 (461)
... ..+.. ....+.||||||..+.. +.... +.+...|+ .++|+ +++|++++.. .
T Consensus 42 ----------~~~--~~~~~-~~~~~~l~DtpG~~~~~----~~~~~---e~v~~~~~~~~~~d~-ii~V~D~t~~---~ 97 (258)
T 3a1s_A 42 ----------KKE--GVFTY-KGYTINLIDLPGTYSLG----YSSID---EKIARDYLLKGDADL-VILVADSVNP---E 97 (258)
T ss_dssp ----------EEE--EEEEE-TTEEEEEEECCCCSSCC----SSSHH---HHHHHHHHHHSCCSE-EEEEEETTSC---H
T ss_pred ----------EEE--EEEEE-CCeEEEEEECCCcCccC----CCCHH---HHHHHHHHhhcCCCE-EEEEeCCCch---h
Confidence 111 11111 23578999999998763 22222 34566777 47885 5555565532 2
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 191 DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
..+.+..++...+.|+++|+||+|+.+.
T Consensus 98 ~~~~~~~~l~~~~~pvilv~NK~Dl~~~ 125 (258)
T 3a1s_A 98 QSLYLLLEILEMEKKVILAMTAIDEAKK 125 (258)
T ss_dssp HHHHHHHHHHTTTCCEEEEEECHHHHHH
T ss_pred hHHHHHHHHHhcCCCEEEEEECcCCCCc
Confidence 3444566666678999999999999753
No 31
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.45 E-value=1.3e-13 Score=120.66 Aligned_cols=122 Identities=20% Similarity=0.217 Sum_probs=73.9
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCC-ccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
.|+|+|+|.+|+|||||+|+|++..+...+.. .+|+.+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~----------------------------------------- 39 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDL----------------------------------------- 39 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC-----------CC-----------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecc-----------------------------------------
Confidence 37899999999999999999998865211111 111111
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
....+.. +...+.++||||..... +...........++..++++| +|.+++......+.
T Consensus 40 ------------~~~~~~~-~~~~~~l~Dt~G~~~~~------~~~~~~~~~~~~~~~~~~~~i-~v~d~~~~~~~~~~- 98 (161)
T 2dyk_A 40 ------------KEGVVET-DRGRFLLVDTGGLWSGD------KWEKKIQEKVDRALEDAEVVL-FAVDGRAELTQADY- 98 (161)
T ss_dssp ------------EEEEEEE-TTEEEEEEECGGGCSSS------SCCHHHHHHHHHHTTTCSEEE-EEEESSSCCCHHHH-
T ss_pred ------------eEEEEEe-CCceEEEEECCCCCCcc------chHHHHHHHHHHHHHhCCEEE-EEEECCCcccHhHH-
Confidence 1111111 12468899999987642 123344667788999999655 45555543333221
Q ss_pred HHHHHhCCCCCceEEEeccCCccCC
Q 012559 194 KLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
.+.+.+...+.|.++|+||+|+.+.
T Consensus 99 ~~~~~~~~~~~p~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 99 EVAEYLRRKGKPVILVATKVDDPKH 123 (161)
T ss_dssp HHHHHHHHHTCCEEEEEECCCSGGG
T ss_pred HHHHHHHhcCCCEEEEEECcccccc
Confidence 1223232246899999999999865
No 32
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.44 E-value=1.5e-13 Score=123.97 Aligned_cols=69 Identities=13% Similarity=0.160 Sum_probs=45.5
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHH---HHHhCC-CCCceEEEec
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKL---AREVDP-TGERTFGVLT 211 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l---~~~~d~-~~~rti~Vlt 211 (461)
..+.|+||||.... ..+...|+.++|++| +|.+++..........+ +..... .+.|+++|+|
T Consensus 70 ~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 135 (195)
T 3bc1_A 70 IHLQLWDTAGLERF-------------RSLTTAFFRDAMGFL-LLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGN 135 (195)
T ss_dssp EEEEEEEECCSGGG-------------HHHHHHTTTTCSEEE-EEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEE
T ss_pred EEEEEEeCCCcHHH-------------HHHHHHHHcCCCEEE-EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 46899999997543 567889999999655 45555433222222222 222222 5789999999
Q ss_pred cCCccCC
Q 012559 212 KLDLMDK 218 (461)
Q Consensus 212 K~D~~~~ 218 (461)
|+|+.+.
T Consensus 136 K~Dl~~~ 142 (195)
T 3bc1_A 136 KSDLEDQ 142 (195)
T ss_dssp CTTCGGG
T ss_pred Ccccccc
Confidence 9999754
No 33
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.44 E-value=2.2e-13 Score=119.67 Aligned_cols=118 Identities=17% Similarity=0.179 Sum_probs=71.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+|+|.+|+|||||+|+|++..+ +.....++......
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~-------------------------------------- 43 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRK-------------------------------------- 43 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEE--------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcc-CCCCCCCcceEEEE--------------------------------------
Confidence 346899999999999999999998875 22211111111000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHH-
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA- 192 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~- 192 (461)
.+.+ ......+.|+||||.... ..+...|+.++++++++ .+++........
T Consensus 44 -------------~~~~-~~~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v-~d~~~~~s~~~~~ 95 (168)
T 1u8z_A 44 -------------KVVL-DGEEVQIDILDTAGQEDY-------------AAIRDNYFRSGEGFLCV-FSITEMESFAATA 95 (168)
T ss_dssp -------------EEEE-TTEEEEEEEEECCC---C-------------HHHHHHHHHHCSEEEEE-EETTCHHHHHHHH
T ss_pred -------------EEEE-CCEEEEEEEEECCCcchh-------------HHHHHHHhhcCCEEEEE-EECCCHHHHHHHH
Confidence 0001 111246889999996543 56778889999965554 454432222222
Q ss_pred --H-HHHHHhCCCCCceEEEeccCCccCC
Q 012559 193 --I-KLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 193 --l-~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
+ .+.+.....+.|+++|+||+|+.+.
T Consensus 96 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 124 (168)
T 1u8z_A 96 DFREQILRVKEDENVPFLLVGNKSDLEDK 124 (168)
T ss_dssp HHHHHHHHHHCCTTSCEEEEEECGGGGGG
T ss_pred HHHHHHHHhcCCCCCcEEEEEECcccccc
Confidence 1 2333344457899999999999754
No 34
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.44 E-value=4.7e-13 Score=120.00 Aligned_cols=118 Identities=17% Similarity=0.179 Sum_probs=73.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+|+|.+++|||||+|+|++..+ +.....++......
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~-------------------------------------- 57 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRK-------------------------------------- 57 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCTTCCEEEEE--------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC-CCcCCCccceEEEE--------------------------------------
Confidence 557899999999999999999998875 22211111111100
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHH-
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA- 192 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~- 192 (461)
.+.+ ......+.|+||||.... ..+...|+.+++++|++ .+++........
T Consensus 58 -------------~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v-~d~~~~~s~~~~~ 109 (187)
T 2a9k_A 58 -------------KVVL-DGEEVQIDILDTAGQEDY-------------AAIRDNYFRSGEGFLCV-FSITEMESFAATA 109 (187)
T ss_dssp -------------EEEE-TTEEEEEEEEECCCTTCC-------------HHHHHHHHHHCSEEEEE-EETTCHHHHHHHH
T ss_pred -------------EEEE-CCEEEEEEEEECCCCccc-------------HHHHHHHhccCCEEEEE-EECcCHHHHHHHH
Confidence 0001 111246889999997653 46677889999965554 444432221222
Q ss_pred --H-HHHHHhCCCCCceEEEeccCCccCC
Q 012559 193 --I-KLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 193 --l-~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
+ .+.+.....+.|+++|+||+|+.+.
T Consensus 110 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 138 (187)
T 2a9k_A 110 DFREQILRVKEDENVPFLLVGNKSDLEDK 138 (187)
T ss_dssp HHHHHHHHHHCCTTCCEEEEEECGGGGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 1 2333344457899999999999764
No 35
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.44 E-value=2.2e-13 Score=124.53 Aligned_cols=119 Identities=16% Similarity=0.181 Sum_probs=74.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+|+|.+|+|||||+|+|++..+.+......+ ..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~---~~--------------------------------------- 44 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVG---ID--------------------------------------- 44 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCS---EE---------------------------------------
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccc---ee---------------------------------------
Confidence 457899999999999999999999876322111000 00
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH--
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD-- 191 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~-- 191 (461)
+ ....+.+ ......+.|+||||.... ..+...|+.+++++| +|.+++.......
T Consensus 45 -------~--~~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii-~v~d~~~~~s~~~~~ 100 (203)
T 1zbd_A 45 -------F--KVKTIYR-NDKRIKLQIWDTAGLERY-------------RTITTAYYRGAMGFI-LMYDITNEESFNAVQ 100 (203)
T ss_dssp -------E--EEEEEEE-TTEEEEEEEEEECCSGGG-------------HHHHHTTGGGCSEEE-EEEETTCHHHHHHHH
T ss_pred -------E--EEEEEEE-CCeEEEEEEEECCCchhh-------------cchHHHhhcCCCEEE-EEEECcCHHHHHHHH
Confidence 0 0000101 112246899999997553 567788999999655 5555543322222
Q ss_pred -HHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 192 -AIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 192 -~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
++..+......+.|+++|+||+|+.+.
T Consensus 101 ~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (203)
T 1zbd_A 101 DWSTQIKTYSWDNAQVLLVGNKCDMEDE 128 (203)
T ss_dssp HHHHHHHHHSCSSCEEEEEEECTTCTTS
T ss_pred HHHHHHHHhcCCCCCEEEEEECcccCcc
Confidence 233334444457899999999999754
No 36
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.44 E-value=1.7e-13 Score=144.58 Aligned_cols=165 Identities=17% Similarity=0.244 Sum_probs=94.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCC--ccCCCccccccEEEEEeecCCCCcchhhhcCCCCcc-cChHHHHHHHHHH
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFL--PRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKF-TDFAAVRKEISDE 110 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~l--P~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~-~d~~~v~~~i~~~ 110 (461)
..|.|+|+|.+|+|||||+|+|+|.++. +++...+|.+.+.+..... ... .++... .+-. ..
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~--~~i------~~g~~l~~~~~-------~~ 128 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGET--EGT------VPGNALVVDPE-------KP 128 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSS--SEE------ECCC----------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCc--ccc------cCCceeeecCc-------cc
Confidence 6799999999999999999999999874 5666666755544432110 000 000000 0000 00
Q ss_pred hhhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHH--HHHHHHHHhcCCCeEEEEEecCCC-cc
Q 012559 111 TDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVED--IENMVRSYVEKPSCIILAISPANQ-DI 187 (461)
Q Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~--i~~~v~~yi~~~~~iIL~V~~a~~-d~ 187 (461)
...+...+..+....+++.+.++...+++||||||+.+... ..+... +..++..|+..+|+ +++|++++. +.
T Consensus 129 ~~~L~~~g~~~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~----~~~~~~~~f~~~~~~~l~~aD~-il~VvDa~~~~~ 203 (550)
T 2qpt_A 129 FRKLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSGAK----QRVSRGYDFPAVLRWFAERVDL-IILLFDAHKLEI 203 (550)
T ss_dssp ---------CCCTTEEEEECCCHHHHHCEEEECCCBCC-----------CCSCHHHHHHHHHHHCSE-EEEEEETTSCCC
T ss_pred HHHHhhhcccccccceEEeccccccCCEEEEECcCCCCcch----hHHHHHhhHHHHHHHHHHhCCE-EEEEEeCCcCCC
Confidence 00011112334444555544433335799999999986321 111111 34677889999996 555555554 34
Q ss_pred ccHHHHHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 188 ATSDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 188 ~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
.. ....+++.+...+.++++|+||+|+.++.
T Consensus 204 ~~-~~~~~l~~l~~~~~pvilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 204 SD-EFSEAIGALRGHEDKIRVVLNKADMVETQ 234 (550)
T ss_dssp CH-HHHHHHHHTTTCGGGEEEEEECGGGSCHH
T ss_pred CH-HHHHHHHHHHhcCCCEEEEEECCCccCHH
Confidence 33 33446777877788999999999998643
No 37
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.43 E-value=2.9e-13 Score=123.02 Aligned_cols=65 Identities=14% Similarity=0.246 Sum_probs=42.1
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCC-CCCceEEEeccCC
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDP-TGERTFGVLTKLD 214 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~-~~~rti~VltK~D 214 (461)
..+.||||||.... ..+...|+..+|. +++|.+++..........+...+.. .+.++++|+||+|
T Consensus 93 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~-~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D 158 (208)
T 3clv_A 93 IKFDIWDTAGQERY-------------ASIVPLYYRGATC-AIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKID 158 (208)
T ss_dssp EEEEEEECTTGGGC-------------TTTHHHHHTTCSE-EEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTT
T ss_pred eEEEEEECCCcHHH-------------HHHHHHHhcCCCE-EEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCC
Confidence 56899999996543 3457788999995 5555666544333333223333321 2489999999999
No 38
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.43 E-value=2.2e-13 Score=131.31 Aligned_cols=118 Identities=23% Similarity=0.318 Sum_probs=75.2
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
.+.|+++|.+|+|||||+|+|+|..+.......+|..+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~------------------------------------------ 40 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER------------------------------------------ 40 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSC------------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEE------------------------------------------
Confidence 47899999999999999999999864221111111111
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhc--CCCeEEEEEecCCCccccHHH
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE--KPSCIILAISPANQDIATSDA 192 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~--~~~~iIL~V~~a~~d~~~~~~ 192 (461)
....+.. ...+.+|||||..+.. +.... +.+...|+. ++|. +++|.|++.. ...
T Consensus 41 -----------~~~~~~~--~~~l~l~DtpG~~~~~----~~~~~---e~v~~~~~~~~~~d~-vi~V~D~t~~---e~~ 96 (272)
T 3b1v_A 41 -----------KSGLVKK--NKDLEIQDLPGIYSMS----PYSPE---AKVARDYLLSQRADS-ILNVVDATNL---ERN 96 (272)
T ss_dssp -----------EEEECTT--CTTEEEEECCCCSCSS----CSSHH---HHHHHHHHHTTCCSE-EEEEEEGGGH---HHH
T ss_pred -----------EEEEEec--CCeEEEEECCCcCccC----CCChH---HHHHHHHHhcCCCCE-EEEEecCCch---HhH
Confidence 1111222 4679999999998763 22222 456777876 5885 4555565432 223
Q ss_pred HHHHHHhCCCCCceEEEeccCCccCC
Q 012559 193 IKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
+.+..++...+.|+++|+||+|+...
T Consensus 97 ~~~~~~l~~~~~p~ilv~NK~Dl~~~ 122 (272)
T 3b1v_A 97 LYLTTQLIETGIPVTIALNMIDVLDG 122 (272)
T ss_dssp HHHHHHHHHTCSCEEEEEECHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEEChhhCCc
Confidence 34445554468999999999999743
No 39
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.43 E-value=1.6e-13 Score=120.84 Aligned_cols=117 Identities=13% Similarity=0.080 Sum_probs=56.7
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
..+|+++|.+|+|||||+|+|+|..+.+......+.+..
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~----------------------------------------- 40 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR----------------------------------------- 40 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEE-----------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEE-----------------------------------------
Confidence 468999999999999999999987652221111110000
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHH
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 194 (461)
.+ ........+.++||||.... ..+...|+..++++++++ +.+...+-.....
T Consensus 41 ------------~~-~~~~~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~-d~~~~~s~~~~~~ 93 (166)
T 3q72_A 41 ------------SI-VVDGEEASLMVYDIWEQDGG-------------RWLPGHCMAMGDAYVIVY-SVTDKGSFEKASE 93 (166)
T ss_dssp ------------EE-EETTEEEEEEEEECC----------------------------CCEEEEEE-ETTCHHHHHHHHH
T ss_pred ------------EE-EECCEEEEEEEEECCCCccc-------------hhhhhhhhhhCCEEEEEE-ECCCHHHHHHHHH
Confidence 00 11112246789999996653 456678889999655554 4443222222222
Q ss_pred HHHH----hCCCCCceEEEeccCCccCCC
Q 012559 195 LARE----VDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 195 l~~~----~d~~~~rti~VltK~D~~~~~ 219 (461)
+... ....+.|+++|+||+|+.+..
T Consensus 94 ~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 122 (166)
T 3q72_A 94 LRVQLRRARQTDDVPIILVGNKSDLVRSR 122 (166)
T ss_dssp HHHHHHHCC---CCCEEEEEECTTCCSSC
T ss_pred HHHHHHHhcCCCCCCEEEEEecccccccc
Confidence 2222 223478999999999998643
No 40
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.43 E-value=5.4e-14 Score=125.51 Aligned_cols=119 Identities=16% Similarity=0.156 Sum_probs=69.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
..++|+|+|.+|+|||||+|+|++..+.+......|....
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~---------------------------------------- 47 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFK---------------------------------------- 47 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEE----------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEE----------------------------------------
Confidence 5789999999999999999999998762211111111000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
...+.+ ......+.++||||.... ..+...|+.++|++| +|.+++.........
T Consensus 48 -----------~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~ 101 (181)
T 3tw8_B 48 -----------IRTVEI-NGEKVKLQIWDTAGQERF-------------RTITSTYYRGTHGVI-VVYDVTSAESFVNVK 101 (181)
T ss_dssp -----------EEEEEE-TTEEEEEEEEEETTGGGC-------------SSCCGGGGTTCSEEE-EEEETTCHHHHHHHH
T ss_pred -----------EEEEEE-CCEEEEEEEEcCCCchhh-------------hhhHHHHhccCCEEE-EEEECCCHHHHHHHH
Confidence 000111 111246889999996543 234557888999654 555555433333322
Q ss_pred HHHHHhC--CCCCceEEEeccCCccCC
Q 012559 194 KLAREVD--PTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 194 ~l~~~~d--~~~~rti~VltK~D~~~~ 218 (461)
.+...+. ..+.|+++|+||+|+.+.
T Consensus 102 ~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 128 (181)
T 3tw8_B 102 RWLHEINQNCDDVCRILVGNKNDDPER 128 (181)
T ss_dssp HHHHHHHHHCTTSEEEEEEECTTCGGG
T ss_pred HHHHHHHHhCCCCCEEEEEECCCCchh
Confidence 2222221 125889999999998754
No 41
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.43 E-value=2.2e-13 Score=123.53 Aligned_cols=119 Identities=14% Similarity=0.165 Sum_probs=72.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+|+|.+|+|||||+|+|++..+.+......+ ..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~----------------------------------------- 61 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIG-VE----------------------------------------- 61 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSS-EE-----------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccc-ee-----------------------------------------
Confidence 457899999999999999999999876322111100 00
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccH---
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--- 190 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~--- 190 (461)
+. ...+.+ ......+.|+||||..+. ..+...|+.+++.+| +|.+++......
T Consensus 62 -------~~--~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~vi-~v~D~~~~~s~~~~~ 117 (193)
T 2oil_A 62 -------FS--TRTVML-GTAAVKAQIWDTAGLERY-------------RAITSAYYRGAVGAL-LVFDLTKHQTYAVVE 117 (193)
T ss_dssp -------EE--EEEEEE-TTEEEEEEEEEESCCCTT-------------CTTHHHHHTTCCEEE-EEEETTCHHHHHTHH
T ss_pred -------EE--EEEEEE-CCEEEEEEEEeCCCchhh-------------hhhhHHHhccCCEEE-EEEECCCHHHHHHHH
Confidence 00 000111 112246889999998654 345678899999655 455554332222
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 191 DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
.++..+......+.++++|+||+|+.+.
T Consensus 118 ~~l~~i~~~~~~~~piilv~nK~Dl~~~ 145 (193)
T 2oil_A 118 RWLKELYDHAEATIVVMLVGNKSDLSQA 145 (193)
T ss_dssp HHHHHHHTTSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHhcCCCCeEEEEEECCCcccc
Confidence 2222333333457899999999999754
No 42
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.43 E-value=1.5e-13 Score=121.36 Aligned_cols=119 Identities=19% Similarity=0.172 Sum_probs=67.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+|+|.+|+|||||+|+|++..+.+......+....
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~---------------------------------------- 44 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFL---------------------------------------- 44 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEE----------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEE----------------------------------------
Confidence 3578999999999999999999988752211111110000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH--
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD-- 191 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~-- 191 (461)
...+.+ ......+.++||||.... ..+...|+.++|++|+ |.+++.......
T Consensus 45 -----------~~~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~ 98 (170)
T 1z08_A 45 -----------TKKLNI-GGKRVNLAIWDTAGQERF-------------HALGPIYYRDSNGAIL-VYDITDEDSFQKVK 98 (170)
T ss_dssp -----------EEEEES-SSCEEEEEEEECCCC--------------------CCSSTTCSEEEE-EEETTCHHHHHHHH
T ss_pred -----------EEEEEE-CCEEEEEEEEECCCcHhh-------------hhhHHHHhccCCEEEE-EEECcCHHHHHHHH
Confidence 000011 111246889999996543 3455678889996555 455543222222
Q ss_pred -HHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 192 -AIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 192 -~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
++..++...+.+.|+++|+||+|+.++
T Consensus 99 ~~~~~~~~~~~~~~piilv~nK~Dl~~~ 126 (170)
T 1z08_A 99 NWVKELRKMLGNEICLCIVGNKIDLEKE 126 (170)
T ss_dssp HHHHHHHHHHGGGSEEEEEEECGGGGGG
T ss_pred HHHHHHHHhcCCCCeEEEEEECcccccc
Confidence 222233333446899999999999864
No 43
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.42 E-value=3.2e-13 Score=123.48 Aligned_cols=118 Identities=17% Similarity=0.170 Sum_probs=73.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
..+.|+|+|.+|+|||||+|+|++..+ +.....++.....
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~--------------------------------------- 52 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYR--------------------------------------- 52 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCTTCCEEEE---------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEE---------------------------------------
Confidence 568999999999999999999998875 2221111111100
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH--
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD-- 191 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~-- 191 (461)
..+.+ ......+.|+||||.... ..+...|+..++.+|++ .+++.......
T Consensus 53 ------------~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v-~d~~~~~s~~~~~ 105 (206)
T 2bov_A 53 ------------KKVVL-DGEEVQIDILDTAGQEDY-------------AAIRDNYFRSGEGFLCV-FSITEMESFAATA 105 (206)
T ss_dssp ------------EEEEE-TTEEEEEEEEECCCTTCC-------------HHHHHHHHHHCSEEEEE-EETTCHHHHHHHH
T ss_pred ------------EEEEE-CCEEEEEEEEcCCChhhh-------------HHHHHHHHhhCCEEEEE-EECCCHHHHHHHH
Confidence 00111 111246889999997653 45677889999965554 45443222112
Q ss_pred -HHH-HHHHhCCCCCceEEEeccCCccCC
Q 012559 192 -AIK-LAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 192 -~l~-l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
++. +.+.....+.|+++|+||+|+.+.
T Consensus 106 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 134 (206)
T 2bov_A 106 DFREQILRVKEDENVPFLLVGNKSDLEDK 134 (206)
T ss_dssp HHHHHHHHHTTCSCCCEEEEEECTTCGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEEeccCcccc
Confidence 222 223333457899999999999764
No 44
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.42 E-value=1.6e-13 Score=121.15 Aligned_cols=116 Identities=17% Similarity=0.178 Sum_probs=70.1
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
..+|+|+|.+|+|||||+|+|++..+.+......+....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~----------------------------------------- 41 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFK----------------------------------------- 41 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEE-----------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEE-----------------------------------------
Confidence 368999999999999999999998763221111110000
Q ss_pred cCCCCcccCccEEEEEecC-CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---H
Q 012559 115 TGKSKQISNIPIQLSIYSP-NVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---S 190 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p-~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~---~ 190 (461)
...+... ....+.|+||||.... ..+...|++++|++| +|.+++..... .
T Consensus 42 ------------~~~~~~~~~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~ 95 (170)
T 1g16_A 42 ------------IKTVDINGKKVKLQIWDTAGQERF-------------RTITTAYYRGAMGII-LVYDITDERTFTNIK 95 (170)
T ss_dssp ------------EEEEESSSCEEEEEEECCTTGGGT-------------SCCCHHHHTTEEEEE-EEEETTCHHHHHTHH
T ss_pred ------------EEEEEECCEEEEEEEEeCCCChhh-------------hhhHHHHhccCCEEE-EEEECCCHHHHHHHH
Confidence 0001111 1246889999996543 234567888888655 55555433221 2
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCccC
Q 012559 191 DAIKLAREVDPTGERTFGVLTKLDLMD 217 (461)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~ 217 (461)
.++..+......+.|+++|+||+|+.+
T Consensus 96 ~~~~~i~~~~~~~~piilv~nK~Dl~~ 122 (170)
T 1g16_A 96 QWFKTVNEHANDEAQLLLVGNKSDMET 122 (170)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred HHHHHHHHhcCCCCcEEEEEECccCCc
Confidence 333344455555789999999999943
No 45
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.42 E-value=2.9e-13 Score=120.70 Aligned_cols=117 Identities=18% Similarity=0.325 Sum_probs=75.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhh
Q 012559 33 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (461)
Q Consensus 33 ~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~ 112 (461)
.+.+.|+|+|.+|+|||||+++|++..+.+......|...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~---------------------------------------- 45 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHI---------------------------------------- 45 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTC----------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEee----------------------------------------
Confidence 3679999999999999999999999876332221111111
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHH
Q 012559 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (461)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~ 192 (461)
... .+.+ +...+.++||||..... .+...|+..+|++|++ .+++... ....
T Consensus 46 ---------~~~--~~~~---~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v-~d~~~~~-~~~~ 96 (178)
T 2lkc_A 46 ---------GAY--QVTV---NDKKITFLDTPGHEAFT-------------TMRARGAQVTDIVILV-VAADDGV-MPQT 96 (178)
T ss_dssp ---------CCC--EEEE---TTEEEEESCCCSSSSSS-------------CSCCSSCCCCCEEEEE-EETTCCC-CHHH
T ss_pred ---------eEE--EEEe---CCceEEEEECCCCHHHH-------------HHHHHHHhhCCEEEEE-EECCCCC-cHHH
Confidence 000 1111 12457899999976642 1234677888865544 4555433 2444
Q ss_pred HHHHHHhCCCCCceEEEeccCCccCC
Q 012559 193 IKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
...++.+...+.|+++|+||+|+.+.
T Consensus 97 ~~~l~~~~~~~~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 97 VEAINHAKAANVPIIVAINKMDKPEA 122 (178)
T ss_dssp HHHHHHHGGGSCCEEEEEETTTSSCS
T ss_pred HHHHHHHHhCCCCEEEEEECccCCcC
Confidence 45666666667899999999999864
No 46
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.42 E-value=2.4e-13 Score=121.24 Aligned_cols=118 Identities=19% Similarity=0.195 Sum_probs=72.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
..++|+|+|.+|+|||||+|+|++..+. .....++.....
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~--------------------------------------- 47 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYFV-SDYDPTIEDSYT--------------------------------------- 47 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCC-SSCCTTCCEEEE---------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcCc-cccCCCcCceEE---------------------------------------
Confidence 5679999999999999999999998652 211111111110
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
..+.+ ......+.|+||||.... ..+...|+.+++++|++ .+++.........
T Consensus 48 ------------~~~~~-~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v-~d~~~~~s~~~~~ 100 (181)
T 2fn4_A 48 ------------KICSV-DGIPARLDILDTAGQEEF-------------GAMREQYMRAGHGFLLV-FAINDRQSFNEVG 100 (181)
T ss_dssp ------------EEEEE-TTEEEEEEEEECCCTTTT-------------SCCHHHHHHHCSEEEEE-EETTCHHHHHHHH
T ss_pred ------------EEEEE-CCEEEEEEEEECCCchhh-------------HHHHHHHHhhCCEEEEE-EeCCCHHHHHHHH
Confidence 00001 111246789999997653 23456778888865544 4554322222221
Q ss_pred ----HHHHHhCCCCCceEEEeccCCccCC
Q 012559 194 ----KLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 194 ----~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
.+.+.....+.++++|+||+|+.+.
T Consensus 101 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 129 (181)
T 2fn4_A 101 KLFTQILRVKDRDDFPVVLVGNKADLESQ 129 (181)
T ss_dssp HHHHHHHHHHTSSCCCEEEEEECGGGGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 2334455667899999999999764
No 47
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.42 E-value=3.8e-13 Score=119.75 Aligned_cols=120 Identities=15% Similarity=0.191 Sum_probs=74.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+|+|.+++|||||+|+|++..+.+.. ..++....
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~---------------------------------------- 52 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADC-PHTIGVEF---------------------------------------- 52 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSC-TTSCCCCE----------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCccceEE----------------------------------------
Confidence 4679999999999999999999998762211 11110000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccH---
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--- 190 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~--- 190 (461)
....+.+ ......+.|+||||.... ..+...|++++|++| +|.+++......
T Consensus 53 ----------~~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~ 107 (179)
T 1z0f_A 53 ----------GTRIIEV-SGQKIKLQIWDTAGQERF-------------RAVTRSYYRGAAGAL-MVYDITRRSTYNHLS 107 (179)
T ss_dssp ----------EEEEEEE-TTEEEEEEEEECTTGGGT-------------CHHHHHHHHTCSEEE-EEEETTCHHHHHTHH
T ss_pred ----------EEEEEEE-CCeEEEEEEEECCCChHh-------------hhhHHHHhccCCEEE-EEEeCcCHHHHHHHH
Confidence 0001111 111246899999996543 456788999999655 455554332222
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 191 DAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
.++..++.....+.++++|+||+|+.++.
T Consensus 108 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 136 (179)
T 1z0f_A 108 SWLTDARNLTNPNTVIILIGNKADLEAQR 136 (179)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCGGGC
T ss_pred HHHHHHHHhcCCCCcEEEEEECccccccc
Confidence 23333455555678999999999997543
No 48
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.42 E-value=3.2e-13 Score=120.25 Aligned_cols=119 Identities=16% Similarity=0.226 Sum_probs=70.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+|+|.+|+|||||+|+|++..+.+......+..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~------------------------------------------ 43 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVE------------------------------------------ 43 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEE------------------------------------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeee------------------------------------------
Confidence 45789999999999999999999887521111000000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH--
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD-- 191 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~-- 191 (461)
+ ....+.+ ......+.|+||||.... ..+...|+.+++++++ |.+++.......
T Consensus 44 -------~--~~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~-v~d~~~~~s~~~~~ 99 (177)
T 1wms_A 44 -------F--LNKDLEV-DGHFVTMQIWDTAGQERF-------------RSLRTPFYRGSDCCLL-TFSVDDSQSFQNLS 99 (177)
T ss_dssp -------E--EEEEEEE-TTEEEEEEEEECCCCGGG-------------HHHHGGGGTTCSEEEE-EEETTCHHHHHTHH
T ss_pred -------E--EEEEEEE-CCEEEEEEEEeCCCchhh-------------hhhHHHHHhcCCEEEE-EEECcCHHHHHHHH
Confidence 0 0001111 111246899999996543 5667789999996554 445543222221
Q ss_pred -HHHHHHHhC----CCCCceEEEeccCCccCC
Q 012559 192 -AIKLAREVD----PTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 192 -~l~l~~~~d----~~~~rti~VltK~D~~~~ 218 (461)
++..+.... ..+.|+++|+||+|+.+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 131 (177)
T 1wms_A 100 NWKKEFIYYADVKEPESFPFVILGNKIDISER 131 (177)
T ss_dssp HHHHHHHHHHTCSCTTTSCEEEEEECTTCSSC
T ss_pred HHHHHHHHHccccccCCCcEEEEEECCccccc
Confidence 222222221 256899999999999743
No 49
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.42 E-value=3e-13 Score=121.60 Aligned_cols=119 Identities=18% Similarity=0.202 Sum_probs=74.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+|+|.+++|||||+|+|++..+.+......+....
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~---------------------------------------- 48 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFG---------------------------------------- 48 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEE----------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEE----------------------------------------
Confidence 4579999999999999999999988763221111110000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccH---
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--- 190 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~--- 190 (461)
...+.+ ......+.|+||||.... ..+...|+.++|++|+ |.+++......
T Consensus 49 -----------~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~ 102 (186)
T 2bme_A 49 -----------SKIINV-GGKYVKLQIWDTAGQERF-------------RSVTRSYYRGAAGALL-VYDITSRETYNALT 102 (186)
T ss_dssp -----------EEEEEE-TTEEEEEEEEEECCSGGG-------------HHHHHTTSTTCSEEEE-EEETTCHHHHHTHH
T ss_pred -----------EEEEEE-CCEEEEEEEEeCCCcHHH-------------HHHHHHHHhcCCEEEE-EEECcCHHHHHHHH
Confidence 000011 111246889999996543 5678889999996554 44554322222
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 191 DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
.++..++.....+.|+++|+||+|+.+.
T Consensus 103 ~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (186)
T 2bme_A 103 NWLTDARMLASQNIVIILCGNKKDLDAD 130 (186)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 2233344555567899999999999753
No 50
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.42 E-value=3.1e-13 Score=119.95 Aligned_cols=120 Identities=18% Similarity=0.143 Sum_probs=63.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
..++|+|+|.+|+|||||+|+|+|..+.+....+
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~---------------------------------------------- 36 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQL---------------------------------------------- 36 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCS----------------------------------------------
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCcc----------------------------------------------
Confidence 3578999999999999999999998762211110
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
| .......+.+ ......+.++||||..... ...+...|+..++++++++ +.+...+-....
T Consensus 37 --~----~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~-----------~~~~~~~~~~~~~~~i~v~-d~~~~~s~~~~~ 97 (175)
T 2nzj_A 37 --G----EDVYERTLTV-DGEDTTLVVVDTWEAEKLD-----------KSWSQESCLQGGSAYVIVY-SIADRGSFESAS 97 (175)
T ss_dssp --S----SSEEEEEEEE-TTEEEEEEEECCC------------------CHHHHHTTTSCSEEEEEE-ETTCHHHHHHHH
T ss_pred --c----cceeEEEEEE-CCEEEEEEEEecCCCCccc-----------hhhhHHhhcccCCEEEEEE-ECCCHHHHHHHH
Confidence 0 0000001111 1112467899999975420 1345567888888655554 444322222222
Q ss_pred HH---HHHh-CCCCCceEEEeccCCccCC
Q 012559 194 KL---AREV-DPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 194 ~l---~~~~-d~~~~rti~VltK~D~~~~ 218 (461)
.+ +... ...+.|+++|+||+|+.+.
T Consensus 98 ~~~~~l~~~~~~~~~piilv~NK~Dl~~~ 126 (175)
T 2nzj_A 98 ELRIQLRRTHQADHVPIILVGNKADLARC 126 (175)
T ss_dssp HHHHHHHHCC----CCEEEEEECTTCTTT
T ss_pred HHHHHHHHhhccCCCCEEEEEEChhhccc
Confidence 22 2222 2347899999999999754
No 51
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.42 E-value=4.4e-13 Score=121.80 Aligned_cols=118 Identities=14% Similarity=0.147 Sum_probs=72.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhh
Q 012559 33 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (461)
Q Consensus 33 ~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~ 112 (461)
...++|+|+|.+++|||||+++|++..+....... |..
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~-t~~----------------------------------------- 52 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA-TVG----------------------------------------- 52 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCC-CSS-----------------------------------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCccccccc-ccc-----------------------------------------
Confidence 46789999999999999999999998762211111 100
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHH
Q 012559 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (461)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~ 192 (461)
+... .+ ......+.|+||||.... ..+...|+.++|++| +|.+++....-...
T Consensus 53 --------~~~~----~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii-~v~D~~~~~s~~~~ 105 (199)
T 4bas_A 53 --------YNVE----TF-EKGRVAFTVFDMGGAKKF-------------RGLWETYYDNIDAVI-FVVDSSDHLRLCVV 105 (199)
T ss_dssp --------EEEE----EE-EETTEEEEEEEECCSGGG-------------GGGGGGGCTTCSEEE-EEEETTCGGGHHHH
T ss_pred --------eeEE----EE-EeCCEEEEEEECCCCHhH-------------HHHHHHHHhcCCEEE-EEEECCcHHHHHHH
Confidence 0000 01 123357899999998654 345668899999655 55555543322233
Q ss_pred HHHHHHhCC-----------CCCceEEEeccCCccCCC
Q 012559 193 IKLAREVDP-----------TGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 193 l~l~~~~d~-----------~~~rti~VltK~D~~~~~ 219 (461)
......+.. .+.++++|+||+|+.+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 143 (199)
T 4bas_A 106 KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK 143 (199)
T ss_dssp HHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC
T ss_pred HHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC
Confidence 223333322 278999999999998653
No 52
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.41 E-value=8e-13 Score=116.13 Aligned_cols=111 Identities=17% Similarity=0.237 Sum_probs=71.1
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhcC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 116 (461)
+|+|+|.+++|||||++++++..+ +. ..|+ .|
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~-~~------~~~t-----------------------------------------~~ 33 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEI-VT------TIPT-----------------------------------------IG 33 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCS-SC------CCCC-----------------------------------------SS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCc-Cc------ccCc-----------------------------------------Cc
Confidence 689999999999999999998765 21 1121 00
Q ss_pred CCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHH
Q 012559 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLA 196 (461)
Q Consensus 117 ~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~ 196 (461)
+. ... +.. ....+.++||||.... ..+...|+.++|+++ +|.+++...+-.......
T Consensus 34 ----~~--~~~--~~~-~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~~~ 90 (164)
T 1r8s_A 34 ----FN--VET--VEY-KNISFTVWDVGGQDKI-------------RPLWRHYFQNTQGLI-FVVDSNDRERVNEAREEL 90 (164)
T ss_dssp ----CC--EEE--EEC-SSCEEEEEECCCCGGG-------------HHHHHHHTTTCSEEE-EEEETTCGGGHHHHHHHH
T ss_pred ----ee--EEE--EEE-CCEEEEEEEcCCChhh-------------HHHHHHHhccCCEEE-EEEECCCHHHHHHHHHHH
Confidence 00 000 111 2367899999997553 567788999999655 455555432223333333
Q ss_pred HHh-C---CCCCceEEEeccCCccCC
Q 012559 197 REV-D---PTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 197 ~~~-d---~~~~rti~VltK~D~~~~ 218 (461)
..+ . ..+.|+++|+||+|+.+.
T Consensus 91 ~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 91 MRMLAEDELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp HHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHhchhhcCCeEEEEEECcCCcCC
Confidence 332 2 236899999999999754
No 53
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.41 E-value=1.4e-13 Score=127.53 Aligned_cols=110 Identities=12% Similarity=0.064 Sum_probs=60.6
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccH---HHHHHHHHhCCCCCceEEEecc
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DAIKLAREVDPTGERTFGVLTK 212 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~---~~l~l~~~~d~~~~rti~VltK 212 (461)
..+.|+||||.... ..+...|+.++|++| +|.+++...... .++..+....+.+.++++|+||
T Consensus 61 ~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK 126 (218)
T 4djt_A 61 IKFNVWDTAGQEKK-------------AVLKDVYYIGASGAI-LFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANK 126 (218)
T ss_dssp EEEEEEEECSGGGT-------------SCCCHHHHTTCSEEE-EEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEEC
T ss_pred EEEEEEecCCchhh-------------chHHHHHhhcCCEEE-EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 45889999997654 223456788899654 555555432222 2334445555567899999999
Q ss_pred CCccCCCccHHHHHhCcccccCCCeeEEEeCChhhhcccccHHHHHH
Q 012559 213 LDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARR 259 (461)
Q Consensus 213 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (461)
+|+.+...................|+.+...+..++++.+..+....
T Consensus 127 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 173 (218)
T 4djt_A 127 IDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIF 173 (218)
T ss_dssp TTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHH
T ss_pred CCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 99986532212222111122333456665555555555555444443
No 54
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.41 E-value=4e-13 Score=119.93 Aligned_cols=121 Identities=15% Similarity=0.160 Sum_probs=70.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+|+|.+|+|||||+|+|++..+.+.....++-...
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~---------------------------------------- 48 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDF---------------------------------------- 48 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEE----------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEE----------------------------------------
Confidence 4578999999999999999999998763322111111000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---H
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---S 190 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~---~ 190 (461)
. ...+.+ ......+.++||||.... ..+...|+.++|++|+ |.+++..... .
T Consensus 49 --------~--~~~~~~-~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~ii~-v~d~~~~~s~~~~~ 103 (180)
T 2g6b_A 49 --------R--NKVLDV-DGVKVKLQMWDTAGQERF-------------RSVTHAYYRDAHALLL-LYDVTNKASFDNIQ 103 (180)
T ss_dssp --------E--EEEEEE-TTEEEEEEEEECCCC---------------------CCGGGCSEEEE-EEETTCHHHHHTHH
T ss_pred --------E--EEEEEE-CCEEEEEEEEeCCCcHHH-------------HHHHHHHccCCCEEEE-EEECCCHHHHHHHH
Confidence 0 000011 111246889999996543 4567788999996555 5555433221 2
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 191 DAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
.++..+....+.+.|+++|+||+|+.++.
T Consensus 104 ~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 132 (180)
T 2g6b_A 104 AWLTEIHEYAQHDVALMLLGNKVDSAHER 132 (180)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECCSTTSCC
T ss_pred HHHHHHHHhCCCCCcEEEEEECcccCccc
Confidence 33444455555678999999999998643
No 55
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.41 E-value=5.1e-13 Score=121.35 Aligned_cols=119 Identities=16% Similarity=0.204 Sum_probs=72.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+|+|.+|+|||||+|+|++..+.+......+.
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~------------------------------------------- 61 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGV------------------------------------------- 61 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC--------CCTTE-------------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccce-------------------------------------------
Confidence 4467999999999999999999998762211111000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---H
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---S 190 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~---~ 190 (461)
......+.+ ......+.|+||||.... ..+...|+.++|++| +|.+++..... .
T Consensus 62 --------~~~~~~~~~-~~~~~~l~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii-lV~D~~~~~s~~~~~ 118 (192)
T 2il1_A 62 --------DFKIKTVEL-RGKKIRLQIWDTAGQERF-------------NSITSAYYRSAKGII-LVYDITKKETFDDLP 118 (192)
T ss_dssp --------EEEEEEEEE-TTEEEEEEEEEECCSGGG-------------HHHHHHHHHHCSEEE-EEEETTCHHHHHTHH
T ss_pred --------eEEEEEEEE-CCeEEEEEEEeCCCcHHH-------------HHHHHHHhcCCCEEE-EEEECcCHHHHHHHH
Confidence 000001111 111246899999996543 566788899999655 45555433222 2
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 191 DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
.++..++...+.+.++++|+||+|+.+.
T Consensus 119 ~~~~~i~~~~~~~~piilV~NK~Dl~~~ 146 (192)
T 2il1_A 119 KWMKMIDKYASEDAELLLVGNKLDCETD 146 (192)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 2334556666668899999999999754
No 56
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.41 E-value=2.4e-13 Score=123.42 Aligned_cols=119 Identities=18% Similarity=0.160 Sum_probs=72.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+|+|.+++|||||+|+|++..+.+.... |...
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~--~~~~----------------------------------------- 58 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISP--TIGA----------------------------------------- 58 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCC--CSSE-----------------------------------------
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCC--Ccce-----------------------------------------
Confidence 457899999999999999999999875211100 0000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH--
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD-- 191 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~-- 191 (461)
+.....+.+ ......+.|+||||.... ..+...|+.+++++|+ |.+++.......
T Consensus 59 --------~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~iil-V~d~~~~~s~~~~~ 115 (192)
T 2fg5_A 59 --------SFMTKTVPC-GNELHKFLIWDTAGQERF-------------HSLAPMYYRGSAAAVI-VYDITKQDSFYTLK 115 (192)
T ss_dssp --------EEEEEEEEC-SSSEEEEEEEEECCSGGG-------------GGGTHHHHTTCSEEEE-EEETTCTHHHHHHH
T ss_pred --------eEEEEEEEe-CCEEEEEEEEcCCCchhh-------------HhhhHHhhccCCEEEE-EEeCCCHHHHHHHH
Confidence 000000001 112246899999996543 3456678899996554 555543322222
Q ss_pred -HHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 192 -AIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 192 -~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
++..++...+.+.|+++|+||+|+.+.
T Consensus 116 ~~~~~i~~~~~~~~piiiv~NK~Dl~~~ 143 (192)
T 2fg5_A 116 KWVKELKEHGPENIVMAIAGNKCDLSDI 143 (192)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 333344455557899999999999753
No 57
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.41 E-value=4.2e-13 Score=118.44 Aligned_cols=120 Identities=18% Similarity=0.220 Sum_probs=73.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+|+|.+|+|||||+|+|++..+.+....... ..
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~--~~---------------------------------------- 42 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIG--AS---------------------------------------- 42 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCS--EE----------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcee--EE----------------------------------------
Confidence 346899999999999999999999876322111000 00
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH--
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD-- 191 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~-- 191 (461)
+ ....+.+ ......+.++||||.... ..+...|+.++|++|+ |.+++.......
T Consensus 43 -------~--~~~~~~~-~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~~~~i~-v~d~~~~~s~~~~~ 98 (170)
T 1z0j_A 43 -------F--MTKTVQY-QNELHKFLIWDTAGLERF-------------RALAPMYYRGSAAAII-VYDITKEETFSTLK 98 (170)
T ss_dssp -------E--EEEEEEE-TTEEEEEEEEEECCSGGG-------------GGGTHHHHTTCSEEEE-EEETTCHHHHHHHH
T ss_pred -------E--EEEEEEE-CCeEEEEEEEcCCCchhh-------------hcccHhhCcCCCEEEE-EEECcCHHHHHHHH
Confidence 0 0000001 112246889999997543 3456788999996554 555544322222
Q ss_pred -HHHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 192 -AIKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 192 -~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
++..++.......++++|+||+|+.+..
T Consensus 99 ~~~~~l~~~~~~~~~iilv~nK~Dl~~~~ 127 (170)
T 1z0j_A 99 NWVRELRQHGPPSIVVAIAGNKCDLTDVR 127 (170)
T ss_dssp HHHHHHHHHSCTTSEEEEEEECTTCGGGC
T ss_pred HHHHHHHHhCCCCCcEEEEEECCcccccc
Confidence 3334444545578899999999998643
No 58
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.41 E-value=4.9e-13 Score=121.01 Aligned_cols=119 Identities=16% Similarity=0.199 Sum_probs=72.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+|+|.+++|||||+|+|++..+.+......+..
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~------------------------------------------ 51 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVD------------------------------------------ 51 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEE------------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceE------------------------------------------
Confidence 44689999999999999999999987632211110000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
.....+.+ ......+.|+||||.... ..+...|+.++|++ ++|.++..........
T Consensus 52 ---------~~~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~i-i~v~d~~~~~s~~~~~ 107 (195)
T 1x3s_A 52 ---------FKVKTISV-DGNKAKLAIWDTAGQERF-------------RTLTPSYYRGAQGV-ILVYDVTRRDTFVKLD 107 (195)
T ss_dssp ---------EEEEEEEE-TTEEEEEEEEEECSSGGG-------------CCSHHHHHTTCCEE-EEEEETTCHHHHHTHH
T ss_pred ---------EEEEEEEE-CCeEEEEEEEeCCCchhh-------------hhhhHHHhccCCEE-EEEEECcCHHHHHHHH
Confidence 00000111 112256889999996553 23466888999964 4555555433222333
Q ss_pred HHHHHhCC----CCCceEEEeccCCccCC
Q 012559 194 KLAREVDP----TGERTFGVLTKLDLMDK 218 (461)
Q Consensus 194 ~l~~~~d~----~~~rti~VltK~D~~~~ 218 (461)
.+..++.. .+.++++|+||+|+.+.
T Consensus 108 ~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~ 136 (195)
T 1x3s_A 108 NWLNELETYCTRNDIVNMLVGNKIDKENR 136 (195)
T ss_dssp HHHHHHTTCCSCSCCEEEEEEECTTSSSC
T ss_pred HHHHHHHHhcCcCCCcEEEEEECCcCccc
Confidence 33444432 46789999999999543
No 59
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.41 E-value=1.7e-13 Score=126.72 Aligned_cols=69 Identities=14% Similarity=0.201 Sum_probs=47.1
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCC----CCCceEEEec
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDP----TGERTFGVLT 211 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~----~~~rti~Vlt 211 (461)
..+.||||||... ...+...|+.++|++ ++|.+++..........+...+.. .+.++++|+|
T Consensus 84 ~~l~l~Dt~G~~~-------------~~~~~~~~~~~~d~i-ilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~N 149 (217)
T 2f7s_A 84 VHLQLWDTAGQER-------------FRSLTTAFFRDAMGF-LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGN 149 (217)
T ss_dssp EEEEEEEEESHHH-------------HHHHHHHHHTTCCEE-EEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEE
T ss_pred EEEEEEECCCcHh-------------HHhHHHHHhcCCCEE-EEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEE
Confidence 4689999999432 256788999999964 455565543333344445555543 4688999999
Q ss_pred cCCccCC
Q 012559 212 KLDLMDK 218 (461)
Q Consensus 212 K~D~~~~ 218 (461)
|+|+.+.
T Consensus 150 K~Dl~~~ 156 (217)
T 2f7s_A 150 KADLPDQ 156 (217)
T ss_dssp CTTCGGG
T ss_pred CCccccc
Confidence 9999754
No 60
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.40 E-value=2e-13 Score=123.53 Aligned_cols=119 Identities=16% Similarity=0.156 Sum_probs=72.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+|+|.+|+|||||+|+|++..+.+......+ .
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~--~----------------------------------------- 57 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVG--I----------------------------------------- 57 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCC--C-----------------------------------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcee--E-----------------------------------------
Confidence 356899999999999999999999876322111000 0
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccH---
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--- 190 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~--- 190 (461)
.+ ....+.+ ......+.|+||||.... ..+...|+.++|++| +|.+++......
T Consensus 58 ------~~--~~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii-~v~d~~~~~s~~~~~ 114 (189)
T 2gf9_A 58 ------DF--KVKTVYR-HDKRIKLQIWDTAGQERY-------------RTITTAYYRGAMGFL-LMYDIANQESFAAVQ 114 (189)
T ss_dssp ------EE--EEEEEEE-TTEEEEEEEEECCSCCSS-------------CCSGGGGGTTCSEEE-EEEETTCHHHHHTHH
T ss_pred ------EE--EEEEEEE-CCeEEEEEEEeCCCcHHH-------------hhhHHHhccCCCEEE-EEEECCCHHHHHHHH
Confidence 00 0000111 112246889999997654 233567889999655 455554322222
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 191 DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
.++..++.....+.++++|+||+|+.+.
T Consensus 115 ~~~~~i~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 2gf9_A 115 DWATQIKTYSWDNAQVILVGNKCDLEDE 142 (189)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHHHHHHhcCCCCCEEEEEECcccccc
Confidence 2333344444457899999999999754
No 61
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.40 E-value=3.5e-13 Score=119.01 Aligned_cols=70 Identities=17% Similarity=0.109 Sum_probs=44.1
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---HHHHHHHHHhCC--CCCceEEEe
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---SDAIKLAREVDP--TGERTFGVL 210 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~---~~~l~l~~~~d~--~~~rti~Vl 210 (461)
..+.++||||..+. ..+...|+..+|++|++ .+++..... ......+.+... .+.|+++|+
T Consensus 51 ~~~~~~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v-~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~ 116 (172)
T 2erx_A 51 CTLQITDTTGSHQF-------------PAMQRLSISKGHAFILV-YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVG 116 (172)
T ss_dssp EEEEEEECCSCSSC-------------HHHHHHHHHHCSEEEEE-EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEE
T ss_pred EEEEEEECCCchhh-------------HHHHHHhcccCCEEEEE-EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Confidence 46889999997654 45677888889965554 454432221 122222333321 368999999
Q ss_pred ccCCccCCC
Q 012559 211 TKLDLMDKG 219 (461)
Q Consensus 211 tK~D~~~~~ 219 (461)
||+|+.+..
T Consensus 117 nK~Dl~~~~ 125 (172)
T 2erx_A 117 NKCDESPSR 125 (172)
T ss_dssp ECGGGGGGC
T ss_pred Ecccccccc
Confidence 999997543
No 62
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.40 E-value=4.4e-13 Score=117.91 Aligned_cols=116 Identities=19% Similarity=0.182 Sum_probs=70.0
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 115 (461)
.+|+|+|.+|+|||||+|+|++..+ +.....++.....
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~----------------------------------------- 41 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYR----------------------------------------- 41 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCC-CCSCCCCSEEEEE-----------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCCccceEE-----------------------------------------
Confidence 5799999999999999999998765 2211111110000
Q ss_pred CCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---HHH
Q 012559 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---SDA 192 (461)
Q Consensus 116 g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~---~~~ 192 (461)
..+.+ ......+.++||||.... ..+...|+.+++++++++ ++....+- ..+
T Consensus 42 ----------~~~~~-~~~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~~~ 96 (167)
T 1c1y_A 42 ----------KQVEV-DCQQCMLEILDTAGTEQF-------------TAMRDLYMKNGQGFALVY-SITAQSTFNDLQDL 96 (167)
T ss_dssp ----------EEEES-SSCEEEEEEEEECSSCSS-------------TTHHHHHHHHCSEEEEEE-ETTCHHHHHTHHHH
T ss_pred ----------EEEEE-CCEEEEEEEEECCChHHH-------------HHHHHHHhccCCEEEEEE-ECCCHHHHHHHHHH
Confidence 00001 111246889999997654 345667888889655544 44432111 122
Q ss_pred HH-HHHHhCCCCCceEEEeccCCccCC
Q 012559 193 IK-LAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 193 l~-l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
+. +.+.....+.|.++|+||+|+.+.
T Consensus 97 ~~~i~~~~~~~~~piilv~nK~Dl~~~ 123 (167)
T 1c1y_A 97 REQILRVKDTEDVPMILVGNKCDLEDE 123 (167)
T ss_dssp HHHHHHHHCCSCCCEEEEEECTTCGGG
T ss_pred HHHHHHhhCcCCCcEEEEEECcccccc
Confidence 22 333334557899999999999754
No 63
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.40 E-value=3.4e-13 Score=120.54 Aligned_cols=120 Identities=15% Similarity=0.195 Sum_probs=72.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+|+|.+|+|||||+|+|++..+.+......+.
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~------------------------------------------- 47 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGA------------------------------------------- 47 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCC-------------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCcee-------------------------------------------
Confidence 4468999999999999999999998763211111000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHH-
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA- 192 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~- 192 (461)
.+. ...+.+ ......+.|+||||.... ..+...|++++|++| +|.+++........
T Consensus 48 ------~~~--~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~ 104 (181)
T 2efe_B 48 ------AFF--SQTLAV-NDATVKFEIWDTAGQERY-------------HSLAPMYYRGAAAAI-IVFDVTNQASFERAK 104 (181)
T ss_dssp ------SEE--EEEEEE-TTEEEEEEEEECCCSGGG-------------GGGTHHHHTTCSEEE-EEEETTCHHHHHHHH
T ss_pred ------EEE--EEEEEE-CCEEEEEEEEeCCCChhh-------------hhhhHHHhccCCEEE-EEEECCCHHHHHHHH
Confidence 000 000111 111246899999996543 345678889999655 55555543332222
Q ss_pred --HHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 193 --IKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 193 --l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
+..+......+.++++|+||+|+.+..
T Consensus 105 ~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~ 133 (181)
T 2efe_B 105 KWVQELQAQGNPNMVMALAGNKSDLLDAR 133 (181)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred HHHHHHHHhcCCCCcEEEEEECCcccccc
Confidence 223333334468899999999997543
No 64
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.40 E-value=1.2e-13 Score=121.71 Aligned_cols=118 Identities=19% Similarity=0.180 Sum_probs=69.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+|+|.+|+|||||+|+|++..+.+......+...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~----------------------------------------- 42 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDF----------------------------------------- 42 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSE-----------------------------------------
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEE-----------------------------------------
Confidence 357899999999999999999998765211111000000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH--
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD-- 191 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~-- 191 (461)
. ...+.+ ......+.++||||.... ..+...|+.++|++++ |.+++...+...
T Consensus 43 --------~--~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~ 97 (168)
T 1z2a_A 43 --------L--ERQIQV-NDEDVRLMLWDTAGQEEF-------------DAITKAYYRGAQACVL-VFSTTDRESFEAIS 97 (168)
T ss_dssp --------E--EEEEEE-TTEEEEEEEECCTTGGGT-------------TCCCHHHHTTCCEEEE-EEETTCHHHHHTHH
T ss_pred --------E--EEEEEE-CCEEEEEEEEcCCCcHhH-------------HHHHHHHhcCCCEEEE-EEECcCHHHHHHHH
Confidence 0 001111 111246899999996543 2346678889996554 445543222222
Q ss_pred -HHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 192 -AIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 192 -~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
++..+.... .+.|.++|+||+|+.++
T Consensus 98 ~~~~~i~~~~-~~~piilv~nK~Dl~~~ 124 (168)
T 1z2a_A 98 SWREKVVAEV-GDIPTALVQNKIDLLDD 124 (168)
T ss_dssp HHHHHHHHHH-CSCCEEEEEECGGGGGG
T ss_pred HHHHHHHHhC-CCCCEEEEEECcccCcc
Confidence 222222222 36899999999999864
No 65
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.40 E-value=5.4e-13 Score=116.79 Aligned_cols=116 Identities=18% Similarity=0.214 Sum_probs=69.7
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 115 (461)
.+|+|+|.+|+|||||+|+|++..+.+... .++....
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~-~~~~~~~------------------------------------------ 40 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDECD-PTIEDSY------------------------------------------ 40 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSCCC-TTCCEEE------------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCccccC-CccceEE------------------------------------------
Confidence 479999999999999999999886532111 1111000
Q ss_pred CCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHH---
Q 012559 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA--- 192 (461)
Q Consensus 116 g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~--- 192 (461)
...+.+ ......+.++||||.... ..+...|+..++.+++++ +++........
T Consensus 41 ---------~~~~~~-~~~~~~~~~~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~-d~~~~~~~~~~~~~ 96 (166)
T 2ce2_X 41 ---------RKQVVI-DGETCLLDILDTAGQEEY-------------SAMRDQYMRTGEGFLCVF-AINNTKSFEDIHQY 96 (166)
T ss_dssp ---------EEEEEE-TTEEEEEEEEECCCCSSC-------------CHHHHHHHHHCSEEEEEE-ETTCHHHHHHHHHH
T ss_pred ---------EEEEEE-CCEEEEEEEEECCCchhh-------------hHHHHHhhccCCEEEEEE-ECCCHHHHHHHHHH
Confidence 000001 111246789999997653 345667888889655554 44432222222
Q ss_pred HHHHHH-hCCCCCceEEEeccCCccCC
Q 012559 193 IKLARE-VDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 193 l~l~~~-~d~~~~rti~VltK~D~~~~ 218 (461)
+..+.. ....+.|+++|+||+|+.+.
T Consensus 97 ~~~i~~~~~~~~~p~iiv~nK~Dl~~~ 123 (166)
T 2ce2_X 97 REQIKRVKDSDDVPMVLVGNKSDLAAR 123 (166)
T ss_dssp HHHHHHHHTCSCCCEEEEEECTTCSCC
T ss_pred HHHHHHhcCCCCCcEEEEEEchhhhhc
Confidence 222222 23347899999999999863
No 66
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.40 E-value=4.6e-13 Score=123.16 Aligned_cols=118 Identities=19% Similarity=0.215 Sum_probs=72.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
..++|+|+|.+++|||||+|+|++..+.+......+....
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~---------------------------------------- 58 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFK---------------------------------------- 58 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEE----------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE----------------------------------------
Confidence 5689999999999999999999988763221111111100
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---H
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---S 190 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~---~ 190 (461)
...+.+ ......+.|+||||.... ..+...|+..+|++|+ |.+++..... .
T Consensus 59 -----------~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~-v~d~~~~~s~~~~~ 112 (213)
T 3cph_A 59 -----------IKTVDI-NGKKVKLQLWDTAGQERF-------------RTITTAYYRGAMGIIL-VYDVTDERTFTNIK 112 (213)
T ss_dssp -----------EEEEEE-TTEEEEEEEECCTTGGGG-------------TCCCHHHHTTCSEEEE-EEETTCHHHHHTHH
T ss_pred -----------EEEEEE-CCEEEEEEEEeCCCcHHH-------------HHHHHHHhccCCEEEE-EEECCCHHHHHHHH
Confidence 000111 111246899999996543 2346678899996555 4555432221 2
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCccC
Q 012559 191 DAIKLAREVDPTGERTFGVLTKLDLMD 217 (461)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~ 217 (461)
.++..+....+.+.|+++|+||+|+..
T Consensus 113 ~~~~~i~~~~~~~~piilv~nK~Dl~~ 139 (213)
T 3cph_A 113 QWFKTVNEHANDEAQLLLVGNKSDMET 139 (213)
T ss_dssp HHHHHHHHHTTTCSEEEEEEECTTCSS
T ss_pred HHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 333444555555789999999999943
No 67
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.40 E-value=3.6e-13 Score=118.70 Aligned_cols=117 Identities=15% Similarity=0.221 Sum_probs=71.5
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 115 (461)
.+|+|+|.+|+|||||+|+|++..+.+......+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~------------------------------------------- 40 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAF------------------------------------------- 40 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEE-------------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-------------------------------------------
Confidence 5799999999999999999998876322111111000
Q ss_pred CCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHH-
Q 012559 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK- 194 (461)
Q Consensus 116 g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~- 194 (461)
....+.+ ......+.++||||.... ..+...|++++|++| +|.+++..........
T Consensus 41 --------~~~~~~~-~~~~~~~~~~D~~G~~~~-------------~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~~ 97 (170)
T 1ek0_A 41 --------LTQRVTI-NEHTVKFEIWDTAGQERF-------------ASLAPXYYRNAQAAL-VVYDVTKPQSFIKARHW 97 (170)
T ss_dssp --------EEEEEEE-TTEEEEEEEEEECCSGGG-------------GGGHHHHHTTCSEEE-EEEETTCHHHHHHHHHH
T ss_pred --------EEEEEEE-CCEEEEEEEEECCCChhh-------------hhhhhhhhccCcEEE-EEEecCChHHHHHHHHH
Confidence 0000111 112246899999996543 345778899999654 5555554322222222
Q ss_pred --HHHHhCCCCCceEEEeccCCccCC
Q 012559 195 --LAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 195 --l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
.+......+.++++|+||+|+.+.
T Consensus 98 ~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 98 VKELHEQASKDIIIALVGNKIDXLQE 123 (170)
T ss_dssp HHHHHHHSCTTCEEEEEEECGGGGGS
T ss_pred HHHHHHhcCCCCcEEEEEECCCcccc
Confidence 233333457899999999999864
No 68
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.40 E-value=5.2e-13 Score=120.07 Aligned_cols=117 Identities=18% Similarity=0.209 Sum_probs=68.8
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 115 (461)
.+|+|+|.+|+|||||+|+|++..+.+.. ..++......
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~---------------------------------------- 43 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHFVDEY-DPTIEDSYRK---------------------------------------- 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCCCC-CTTCCEEEEE----------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCCC-CCCchheEEE----------------------------------------
Confidence 58999999999999999999988752221 1111111000
Q ss_pred CCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH---H
Q 012559 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD---A 192 (461)
Q Consensus 116 g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~---~ 192 (461)
.+ ........+.|+||||.... ..+...|+..++.+++ |.+++....... +
T Consensus 44 -----------~~-~~~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~-v~d~~~~~s~~~~~~~ 97 (189)
T 4dsu_A 44 -----------QV-VIDGETCLLDILDTAGQEEY-------------SAMRDQYMRTGEGFLC-VFAINNTKSFEDIHHY 97 (189)
T ss_dssp -----------EE-EETTEEEEEEEEECCCC----------------CTTHHHHHHHCSEEEE-EEETTCHHHHHHHHHH
T ss_pred -----------EE-EECCcEEEEEEEECCCcHHH-------------HHHHHHHHhcCCEEEE-EEECCCHHHHHHHHHH
Confidence 00 01111245789999996553 3456678888886554 445443222122 2
Q ss_pred HH-HHHHhCCCCCceEEEeccCCccCCC
Q 012559 193 IK-LAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 193 l~-l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
.. +.......+.|+++|+||+|+.+..
T Consensus 98 ~~~~~~~~~~~~~p~i~v~nK~Dl~~~~ 125 (189)
T 4dsu_A 98 REQIKRVKDSEDVPMVLVGNKCDLPSRT 125 (189)
T ss_dssp HHHHHHHTTCSCCCEEEEEECTTSSSCS
T ss_pred HHHHHHhcCCCCCcEEEEEECccCcccc
Confidence 22 2233344578999999999997543
No 69
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.40 E-value=1.6e-13 Score=122.43 Aligned_cols=120 Identities=18% Similarity=0.223 Sum_probs=69.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+|+|.+++|||||+++|++..+ +.... |
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~-~~~~~-----~----------------------------------------- 37 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETF-GKQYK-----Q----------------------------------------- 37 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGT-THHHH-----H-----------------------------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcC-CCCCC-----C-----------------------------------------
Confidence 457899999999999999999998765 11000 0
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccH---
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--- 190 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~--- 190 (461)
..| .......+.+.+.....+.++||||.... ..+...|+.++|++|+ |.+++...+..
T Consensus 38 t~~----~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~ 99 (178)
T 2hxs_A 38 TIG----LDFFLRRITLPGNLNVTLQIWDIGGQTIG-------------GKMLDKYIYGAQGVLL-VYDITNYQSFENLE 99 (178)
T ss_dssp TTT----SSEEEEEEEETTTEEEEEEEEECTTCCTT-------------CTTHHHHHTTCSEEEE-EEETTCHHHHHTHH
T ss_pred cee----EEEEEEEEEeCCCCEEEEEEEECCCCccc-------------cchhhHHHhhCCEEEE-EEECCCHHHHHHHH
Confidence 001 00001111121111357899999997653 2356788999996555 55554322222
Q ss_pred HHHHHHHHhCC--CCCc-eEEEeccCCccCC
Q 012559 191 DAIKLAREVDP--TGER-TFGVLTKLDLMDK 218 (461)
Q Consensus 191 ~~l~l~~~~d~--~~~r-ti~VltK~D~~~~ 218 (461)
.++..++...+ .+.+ +++|+||+|+.+.
T Consensus 100 ~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~ 130 (178)
T 2hxs_A 100 DWYTVVKKVSEESETQPLVALVGNKIDLEHM 130 (178)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEEEECGGGGGG
T ss_pred HHHHHHHHHhcccCCCCeEEEEEEccccccc
Confidence 22222232211 1345 7899999999753
No 70
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.39 E-value=9.5e-14 Score=123.69 Aligned_cols=119 Identities=19% Similarity=0.207 Sum_probs=71.2
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
-.+|+|+|.+|+|||||+|+|++..+.+......+....
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~----------------------------------------- 52 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFL----------------------------------------- 52 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEE-----------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEE-----------------------------------------
Confidence 368999999999999999999987763221111111000
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccH---H
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---D 191 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~---~ 191 (461)
...+.+ ......+.++||||.... ..+...|+.++|++| +|.+++...... .
T Consensus 53 ----------~~~~~~-~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~ 107 (179)
T 2y8e_A 53 ----------SKTMYL-EDRTVRLQLWDTAGQERF-------------RSLIPSYIRDSTVAV-VVYDITNTNSFHQTSK 107 (179)
T ss_dssp ----------EEEEEE-TTEEEEEEEEEECCSGGG-------------GGGSHHHHHTCSEEE-EEEETTCHHHHHTHHH
T ss_pred ----------EEEEEE-CCeEEEEEEEECCCcHHH-------------HHHHHHHhcCCCEEE-EEEECCCHHHHHHHHH
Confidence 000001 111246899999996543 345667888999655 455554322211 2
Q ss_pred HHHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 192 AIKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
++..+....+.+.|+++|+||+|+.++.
T Consensus 108 ~~~~i~~~~~~~~piilv~nK~Dl~~~~ 135 (179)
T 2y8e_A 108 WIDDVRTERGSDVIIMLVGNKTDLSDKR 135 (179)
T ss_dssp HHHHHHHHHTTSSEEEEEEECGGGGGGC
T ss_pred HHHHHHHhcCCCCcEEEEEECCcccccC
Confidence 2222333334568999999999997543
No 71
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.39 E-value=7.4e-13 Score=121.63 Aligned_cols=119 Identities=18% Similarity=0.278 Sum_probs=74.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
....|+|+|.+|+|||||+++|++..+ +.....+.-..
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~----------------------------------------- 62 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLF-PPGQGATIGVD----------------------------------------- 62 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CTTCCCCCSEE-----------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCC-CCCCCCcccee-----------------------------------------
Confidence 457899999999999999999998865 22211100000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---H
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---S 190 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~---~ 190 (461)
+. ...+.+ ......+.|+||||.... ..+...|++++|++|+ |.+++...+. .
T Consensus 63 -------~~--~~~~~~-~~~~~~l~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~-v~D~~~~~s~~~~~ 118 (201)
T 2ew1_A 63 -------FM--IKTVEI-NGEKVKLQIWDTAGQERF-------------RSITQSYYRSANALIL-TYDITCEESFRCLP 118 (201)
T ss_dssp -------EE--EEEEEE-TTEEEEEEEEEECCSGGG-------------HHHHGGGSTTCSEEEE-EEETTCHHHHHTHH
T ss_pred -------EE--EEEEEE-CCEEEEEEEEECCCcHHH-------------HHHHHHHHhcCCEEEE-EEECCCHHHHHHHH
Confidence 00 000111 111246889999996443 5677889999996555 4455432221 2
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 191 DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
.++..++...+.+.++++|+||+|+.+.
T Consensus 119 ~~~~~i~~~~~~~~piilv~NK~Dl~~~ 146 (201)
T 2ew1_A 119 EWLREIEQYASNKVITVLVGNKIDLAER 146 (201)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 3344455555667899999999999754
No 72
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.39 E-value=4.5e-13 Score=122.86 Aligned_cols=119 Identities=16% Similarity=0.184 Sum_probs=72.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+|+|.+++|||||+++|++..+........+.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~------------------------------------------- 43 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGV------------------------------------------- 43 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCC-------------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccc-------------------------------------------
Confidence 4579999999999999999999998762111110000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH--
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD-- 191 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~-- 191 (461)
.+. ...+.+ ......+.|+||||.... ..+...|+.++|.+ ++|.+++.......
T Consensus 44 ------~~~--~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~v-ilv~d~~~~~s~~~~~ 100 (206)
T 2bcg_Y 44 ------DFK--IKTVEL-DGKTVKLQIWDTAGQERF-------------RTITSSYYRGSHGI-IIVYDVTDQESFNGVK 100 (206)
T ss_dssp ------CEE--EEEEEE-TTEEEEEEEECCTTTTTT-------------TCCCGGGGTTCSEE-EEEEETTCHHHHHHHH
T ss_pred ------eeE--EEEEEE-CCEEEEEEEEeCCChHHH-------------HHHHHHhccCCCEE-EEEEECcCHHHHHHHH
Confidence 000 001111 111246899999997654 23456788899964 45555554322222
Q ss_pred -HHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 192 -AIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 192 -~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
++..+......+.+.++|+||+|+.+.
T Consensus 101 ~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (206)
T 2bcg_Y 101 MWLQEIDRYATSTVLKLLVGNKCDLKDK 128 (206)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred HHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 233344444557899999999999764
No 73
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.39 E-value=3.8e-13 Score=121.62 Aligned_cols=119 Identities=15% Similarity=0.195 Sum_probs=72.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+|+|.+|+|||||+|+|++..+.+......+.
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~------------------------------------------- 55 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGV------------------------------------------- 55 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSC-------------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcce-------------------------------------------
Confidence 4578999999999999999999987762211111000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHH-HHHHHHhcCCCeEEEEEecCCCcccc---
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIE-NMVRSYVEKPSCIILAISPANQDIAT--- 189 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~-~~v~~yi~~~~~iIL~V~~a~~d~~~--- 189 (461)
.+ ....+.+ ......+.|+||||..+. . .+...|++++|++| +|.+++...+.
T Consensus 56 ------~~--~~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~~d~ii-lv~D~~~~~s~~~~ 112 (189)
T 1z06_A 56 ------DF--RERAVDI-DGERIKIQLWDTAGQERF-------------RKSMVQHYYRNVHAVV-FVYDMTNMASFHSL 112 (189)
T ss_dssp ------CE--EEEEEEE-TTEEEEEEEEECCCSHHH-------------HTTTHHHHHTTCCEEE-EEEETTCHHHHHTH
T ss_pred ------EE--EEEEEEE-CCEEEEEEEEECCCchhh-------------hhhhhHHHhcCCCEEE-EEEECcCHHHHHHH
Confidence 00 0001111 111246899999995432 3 56788999999655 55555432221
Q ss_pred HHHHH-HHHHhCCCCCceEEEeccCCccCC
Q 012559 190 SDAIK-LAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 190 ~~~l~-l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
..++. +.+.....+.++++|+||+|+.+.
T Consensus 113 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 1z06_A 113 PAWIEECKQHLLANDIPRILVGNKCDLRSA 142 (189)
T ss_dssp HHHHHHHHHHCCCSCCCEEEEEECTTCGGG
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 12222 223333567899999999999754
No 74
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.39 E-value=6.5e-13 Score=117.44 Aligned_cols=115 Identities=14% Similarity=0.169 Sum_probs=71.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
+..+|+|+|.+|+|||||+|+|++..+.. ..|+
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-------~~~t---------------------------------------- 38 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVT-------TIPT---------------------------------------- 38 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCC-------CCCC----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCC-------cCCc----------------------------------------
Confidence 45789999999999999999999876521 1111
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
.| +.. -.+.+ +...+.++||||.... ..+...|+.++|++| +|.+++....-....
T Consensus 39 -~~----~~~--~~~~~---~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~ii-~v~d~~~~~s~~~~~ 94 (171)
T 1upt_A 39 -IG----FNV--ETVTY---KNLKFQVWDLGGLTSI-------------RPYWRCYYSNTDAVI-YVVDSCDRDRIGISK 94 (171)
T ss_dssp -SS----EEE--EEEEE---TTEEEEEEEECCCGGG-------------GGGGGGGCTTCSEEE-EEEETTCCTTHHHHH
T ss_pred -Cc----cce--EEEEE---CCEEEEEEECCCChhh-------------hHHHHHHhccCCEEE-EEEECCCHHHHHHHH
Confidence 00 000 00111 1357899999997653 345667889999654 555555432222222
Q ss_pred HHHHH-hC---CCCCceEEEeccCCccCCC
Q 012559 194 KLARE-VD---PTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 194 ~l~~~-~d---~~~~rti~VltK~D~~~~~ 219 (461)
..... +. ..+.|+++|+||+|+.+..
T Consensus 95 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 124 (171)
T 1upt_A 95 SELVAMLEEEELRKAILVVFANKQDMEQAM 124 (171)
T ss_dssp HHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred HHHHHHHhchhhCCCEEEEEEECCCCcCCC
Confidence 22222 22 2478999999999998653
No 75
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.39 E-value=2.2e-13 Score=124.63 Aligned_cols=119 Identities=16% Similarity=0.160 Sum_probs=70.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+|+|.+|+|||||+|+|++..+. .....++..... .
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~-~------------------------------------- 63 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFS-EGYDPTVENTYS-K------------------------------------- 63 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC-SCCCCCSEEEEE-E-------------------------------------
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCC-CCCCCccceEEE-E-------------------------------------
Confidence 5678999999999999999999998762 211111111000 0
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
.+ ........+.|+||||.... ..+...|+.++|.+| +|.+++.........
T Consensus 64 -------------~~-~~~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~ 115 (201)
T 3oes_A 64 -------------IV-TLGKDEFHLHLVDTAGQDEY-------------SILPYSFIIGVHGYV-LVYSVTSLHSFQVIE 115 (201)
T ss_dssp -------------EE-C----CEEEEEEEECCCCTT-------------CCCCGGGTTTCCEEE-EEEETTCHHHHHHHH
T ss_pred -------------EE-EECCEEEEEEEEECCCccch-------------HHHHHHHHhcCCEEE-EEEeCCCHHHHHHHH
Confidence 00 00112356789999997654 234567888999655 455554332223333
Q ss_pred HHHHHh----CCCCCceEEEeccCCccCCC
Q 012559 194 KLAREV----DPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 194 ~l~~~~----d~~~~rti~VltK~D~~~~~ 219 (461)
.+...+ ...+.|+++|+||+|+.+..
T Consensus 116 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 145 (201)
T 3oes_A 116 SLYQKLHEGHGKTRVPVVLVGNKADLSPER 145 (201)
T ss_dssp HHHHHHHC-----CCCEEEEEECTTCGGGC
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccCcccc
Confidence 333333 23367999999999997543
No 76
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.39 E-value=4.5e-13 Score=119.57 Aligned_cols=120 Identities=12% Similarity=0.210 Sum_probs=65.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+|+|.+|+|||||+++|++..+.+......+.-.
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~----------------------------------------- 45 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADF----------------------------------------- 45 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSC-----------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEE-----------------------------------------
Confidence 468999999999999999999999876221111110000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
....+.+.+.....+.++||||.... ..+...|+.++|++|+ |.+++.........
T Consensus 46 ----------~~~~~~~~~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~ 101 (182)
T 1ky3_A 46 ----------LTKEVTVDGDKVATMQVWDTAGQERF-------------QSLGVAFYRGADCCVL-VYDVTNASSFENIK 101 (182)
T ss_dssp ----------EEEEECCSSSCCEEEEEECCC-----------------------CCSTTCCEEEE-EEETTCHHHHHTHH
T ss_pred ----------EEEEEEEcCCcEEEEEEEECCCChHh-------------hhhhHHHhhcCCEEEE-EEECCChHHHHHHH
Confidence 00111111122356899999995442 4566788899996555 45554332222221
Q ss_pred HHH---HHh----CCCCCceEEEeccCCccCC
Q 012559 194 KLA---REV----DPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 194 ~l~---~~~----d~~~~rti~VltK~D~~~~ 218 (461)
.+. ... ...+.|+++|+||+|+.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 133 (182)
T 1ky3_A 102 SWRDEFLVHANVNSPETFPFVILGNKIDAEES 133 (182)
T ss_dssp HHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG
T ss_pred HHHHHHHHHhcccCcCCCcEEEEEECCccccc
Confidence 122 221 1257899999999999643
No 77
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.39 E-value=1.5e-12 Score=117.29 Aligned_cols=124 Identities=19% Similarity=0.344 Sum_probs=74.5
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCC-CccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~-~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
+++|+|+|.+|+|||||+|+|++..+ +.+. ..+|+.+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~t~~~----------------------------------------- 38 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLTGKKV-RRGKRPGVTRKI----------------------------------------- 38 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHHSCCC-SSSSSTTCTTSC-----------------------------------------
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCC-ccCCCCCcccee-----------------------------------------
Confidence 37899999999999999999999875 3221 1111111
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcC-CCe--EEEEEecCCCcccc-
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEK-PSC--IILAISPANQDIAT- 189 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~-~~~--iIL~V~~a~~d~~~- 189 (461)
..+.+ ..+.++||||+..... .+....+....+...|+.+ .+. +++.|+++......
T Consensus 39 ------------~~~~~-----~~~~l~Dt~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~ 99 (190)
T 2cxx_A 39 ------------IEIEW-----KNHKIIDMPGFGFMMG--LPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEII 99 (190)
T ss_dssp ------------EEEEE-----TTEEEEECCCBSCCTT--SCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHH
T ss_pred ------------EEEec-----CCEEEEECCCcccccc--CCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHH
Confidence 11111 1789999999765321 1223344566777777765 442 34456665421110
Q ss_pred HH---------HHHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 190 SD---------AIKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 190 ~~---------~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
.. ...+.+.+...+.|+++|+||+|+.+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 138 (190)
T 2cxx_A 100 KRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV 138 (190)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH
T ss_pred HhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH
Confidence 11 1123344444578999999999998653
No 78
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.38 E-value=6.4e-13 Score=119.19 Aligned_cols=118 Identities=17% Similarity=0.191 Sum_probs=70.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+|+|.+|+|||||+|+|++..+ +.....++.... ..
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~-~~------------------------------------- 57 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIF-VDDYDPTIEDSY-LK------------------------------------- 57 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEE-EE-------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCcccee-EE-------------------------------------
Confidence 456899999999999999999998765 222111111110 00
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---H
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---S 190 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~---~ 190 (461)
.+ ........+.++||||.... ..+...|++++|.+|+ |.+++...+- .
T Consensus 58 -------------~~-~~~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~ 109 (183)
T 3kkq_A 58 -------------HT-EIDNQWAILDVLDTAGQEEF-------------SAMREQYMRTGDGFLI-VYSVTDKASFEHVD 109 (183)
T ss_dssp -------------EE-EETTEEEEEEEEECCSCGGG-------------CSSHHHHHHHCSEEEE-EEETTCHHHHHTHH
T ss_pred -------------EE-EeCCcEEEEEEEECCCchhh-------------HHHHHHHHhcCCEEEE-EEECCCHHHHHHHH
Confidence 00 01111234678999996553 2345678888896554 4455432111 1
Q ss_pred HHHH-HHHHhCCCCCceEEEeccCCccCC
Q 012559 191 DAIK-LAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 191 ~~l~-l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
.++. +.+.....+.|+++|+||+|+.+.
T Consensus 110 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 138 (183)
T 3kkq_A 110 RFHQLILRVKDRESFPMILVANKVDLMHL 138 (183)
T ss_dssp HHHHHHHHHHTSSCCCEEEEEECTTCSTT
T ss_pred HHHHHHHHhcCCCCCcEEEEEECCCchhc
Confidence 2222 233345567899999999999753
No 79
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.38 E-value=2.6e-13 Score=119.90 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=22.4
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCC
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDF 60 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~ 60 (461)
+.+|+|+|.+|+|||||+++|+|..+
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~ 27 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQG 27 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC--
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccC
Confidence 46899999999999999999998764
No 80
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.38 E-value=7.1e-13 Score=117.39 Aligned_cols=117 Identities=24% Similarity=0.402 Sum_probs=70.3
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 115 (461)
+.|+++|.+|+|||||+|+|+|..+ +.+. .|+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~-~~~~-----~~~------------------------------------------ 35 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENV-YIGN-----WPG------------------------------------------ 35 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSS-SCC---------------------------------------------------
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCe-eccC-----CCC------------------------------------------
Confidence 6899999999999999999999865 2211 111
Q ss_pred CCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhc--CCCeEEEEEecCCCccccHHHH
Q 012559 116 GKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE--KPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 116 g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~--~~~~iIL~V~~a~~d~~~~~~l 193 (461)
.++......+.+ +...+.++||||..+.. +.... +.+...|+. +++. +++|.++... ....
T Consensus 36 ---~t~~~~~~~~~~---~~~~l~i~Dt~G~~~~~----~~~~~---~~~~~~~~~~~~~~~-~i~v~D~~~~---~~~~ 98 (165)
T 2wji_A 36 ---VTVEKKEGEFEY---NGEKFKVVDLPGVYSLT----ANSID---EIIARDYIINEKPDL-VVNIVDATAL---ERNL 98 (165)
T ss_dssp ----CCCCCEEEEEE---TTEEEEEEECCCCSCSS----SSSHH---HHHHHHHHHHHCCSE-EEEEEETTCH---HHHH
T ss_pred ---cceeeeEEEEEE---CCcEEEEEECCCcccCC----Ccchh---HHHHHHHHhcCCCCE-EEEEecCCch---hHhH
Confidence 000000111111 12468999999988753 12222 456667775 7885 5556665531 1222
Q ss_pred HHHHHhCCCCCceEEEeccCCccC
Q 012559 194 KLAREVDPTGERTFGVLTKLDLMD 217 (461)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~ 217 (461)
.+..++...+.++++|.||+|+..
T Consensus 99 ~~~~~~~~~~~p~ilv~nK~Dl~~ 122 (165)
T 2wji_A 99 YLTLQLMEMGANLLLALNKMDLAK 122 (165)
T ss_dssp HHHHHHHHTTCCEEEEEECHHHHH
T ss_pred HHHHHHHhcCCCEEEEEEchHhcc
Confidence 233344334789999999999864
No 81
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.38 E-value=2e-13 Score=131.50 Aligned_cols=118 Identities=24% Similarity=0.318 Sum_probs=74.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCc-cccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI-VTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~-~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~ 112 (461)
..+.|+++|.+|||||||+|+|+|..+ +.+.-. +|...
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~---------------------------------------- 40 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEK---------------------------------------- 40 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEE----------------------------------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEe----------------------------------------
Confidence 357999999999999999999999865 332211 11110
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHh--cCCCeEEEEEecCCCccccH
Q 012559 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYV--EKPSCIILAISPANQDIATS 190 (461)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi--~~~~~iIL~V~~a~~d~~~~ 190 (461)
.... +.. +...+.+|||||+.+.. +.... ..++..|+ .++|. +++|++++.. .
T Consensus 41 -----------~~~~--~~~-~~~~~~l~DtpG~~~~~----~~~~~---~~~~~~~~~~~~~d~-vi~v~D~~~~---~ 95 (271)
T 3k53_A 41 -----------KEGI--MEY-REKEFLVVDLPGIYSLT----AHSID---ELIARNFILDGNADV-IVDIVDSTCL---M 95 (271)
T ss_dssp -----------EEEE--EEE-TTEEEEEEECCCCSCCC----SSCHH---HHHHHHHHHTTCCSE-EEEEEEGGGH---H
T ss_pred -----------eEEE--EEE-CCceEEEEeCCCccccc----cCCHH---HHHHHHhhhccCCcE-EEEEecCCcc---h
Confidence 0011 111 22458999999998754 22222 34566777 57885 4555555532 2
Q ss_pred HHHHHHHHhCCCC-CceEEEeccCCccC
Q 012559 191 DAIKLAREVDPTG-ERTFGVLTKLDLMD 217 (461)
Q Consensus 191 ~~l~l~~~~d~~~-~rti~VltK~D~~~ 217 (461)
..+.+..++...+ .|+++|+||+|+.+
T Consensus 96 ~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 123 (271)
T 3k53_A 96 RNLFLTLELFEMEVKNIILVLNKFDLLK 123 (271)
T ss_dssp HHHHHHHHHHHTTCCSEEEEEECHHHHH
T ss_pred hhHHHHHHHHhcCCCCEEEEEEChhcCc
Confidence 3333444444445 89999999999874
No 82
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.38 E-value=6.8e-13 Score=120.25 Aligned_cols=119 Identities=18% Similarity=0.236 Sum_probs=71.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+|+|.+|+|||||+|+|++..+.+......+.
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~------------------------------------------- 56 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV------------------------------------------- 56 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCS-------------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccc-------------------------------------------
Confidence 4568999999999999999999998763221111000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccH---
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--- 190 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~--- 190 (461)
.+. ...+.+ ......+.|+||||.... ..+...|+.+++++|+ |.+++......
T Consensus 57 ------~~~--~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~-v~d~~~~~s~~~~~ 113 (191)
T 2a5j_A 57 ------EFG--ARMVNI-DGKQIKLQIWDTAGQESF-------------RSITRSYYRGAAGALL-VYDITRRETFNHLT 113 (191)
T ss_dssp ------SEE--EEEEEE-TTEEEEEEEECCTTGGGT-------------SCCCHHHHTTCSEEEE-EEETTCHHHHHTHH
T ss_pred ------eeE--EEEEEE-CCEEEEEEEEECCCchhh-------------hhhHHHHhccCCEEEE-EEECCCHHHHHHHH
Confidence 000 001111 111246899999996543 2345678899996555 45554322222
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 191 DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
.++..+......+.++++|+||+|+.+.
T Consensus 114 ~~l~~i~~~~~~~~piilv~nK~Dl~~~ 141 (191)
T 2a5j_A 114 SWLEDARQHSSSNMVIMLIGNKSDLESR 141 (191)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHHHHHHhcCCCCCEEEEEECcccCCc
Confidence 2333344444557899999999999753
No 83
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.38 E-value=2.1e-13 Score=123.70 Aligned_cols=119 Identities=18% Similarity=0.189 Sum_probs=75.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+|+|.+|+|||||+|+|++..+.+... |+
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~------~t---------------------------------------- 55 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFV------ST---------------------------------------- 55 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEE------EE----------------------------------------
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccC------CC----------------------------------------
Confidence 56789999999999999999999977522111 11
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---H
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---S 190 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~---~ 190 (461)
.| .......+.+ ......+.|+||||.... ..+...|+.++|++|+ |.+++..... .
T Consensus 56 -~~----~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~ 115 (191)
T 3dz8_A 56 -VG----IDFKVKTVYR-HEKRVKLQIWDTAGQERY-------------RTITTAYYRGAMGFIL-MYDITNEESFNAVQ 115 (191)
T ss_dssp -ET----TTEEEEEEEE-TTTTEEEEEECHHHHHHC-------------HHHHHHHHTTCCEEEE-EEETTCHHHHHTHH
T ss_pred -ee----eEEEEEEEEE-CCEEEEEEEEeCCChHHH-------------HHHHHHHHccCCEEEE-EEECcCHHHHHHHH
Confidence 00 0000011111 112356899999994332 5678899999996554 5555432211 2
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 191 DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
.++..++.....+.++++|+||+|+.+.
T Consensus 116 ~~~~~i~~~~~~~~piilv~nK~Dl~~~ 143 (191)
T 3dz8_A 116 DWATQIKTYSWDNAQVILVGNKCDMEEE 143 (191)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 3344455555567899999999999754
No 84
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.38 E-value=3.6e-13 Score=123.31 Aligned_cols=118 Identities=14% Similarity=0.238 Sum_probs=69.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+|+|.+|+|||||+|+|++..+.+......+....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~---------------------------------------- 46 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFL---------------------------------------- 46 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEE----------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEE----------------------------------------
Confidence 4578999999999999999999998763221111110000
Q ss_pred hcCCCCcccCccEEEEEec-CCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH-
Q 012559 114 ITGKSKQISNIPIQLSIYS-PNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD- 191 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~-p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~- 191 (461)
...+.. .....+.|+||||.... ..+...|+.++|.+ ++|.+++.......
T Consensus 47 -------------~~~~~~~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~-i~v~d~~~~~s~~~~ 99 (207)
T 1vg8_A 47 -------------TKEVMVDDRLVTMQIWDTAGQERF-------------QSLGVAFYRGADCC-VLVFDVTAPNTFKTL 99 (207)
T ss_dssp -------------EEEEESSSCEEEEEEEEECSSGGG-------------SCSCCGGGTTCSEE-EEEEETTCHHHHHTH
T ss_pred -------------EEEEEECCEEEEEEEEeCCCcHHH-------------HHhHHHHHhCCcEE-EEEEECCCHHHHHHH
Confidence 000111 11246899999996553 22345788889964 45555543322211
Q ss_pred --HHH-HHHHhC---CCCCceEEEeccCCccCC
Q 012559 192 --AIK-LAREVD---PTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 192 --~l~-l~~~~d---~~~~rti~VltK~D~~~~ 218 (461)
++. +..... +.+.|+++|+||+|+.+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (207)
T 1vg8_A 100 DSWRDEFLIQASPRDPENFPFVVLGNKIDLENR 132 (207)
T ss_dssp HHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC
T ss_pred HHHHHHHHHhcccccCCCCcEEEEEECCCCccc
Confidence 222 122221 246799999999999743
No 85
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.37 E-value=4.4e-12 Score=127.11 Aligned_cols=126 Identities=21% Similarity=0.326 Sum_probs=76.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
..|.|+++|.+|||||||+|+|+|..+...+...+|+-|+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~--------------------------------------- 218 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKR--------------------------------------- 218 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCE---------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEE---------------------------------------
Confidence 57889999999999999999999987522222223333321
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcc---cc-
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI---AT- 189 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~---~~- 189 (461)
-.+.+ ++ ..+.++||||+.... |.+..+.+.. +..++..+|. +++|.+++... ..
T Consensus 219 ------------~~i~~--~g-~~v~l~DT~G~i~~l----p~~lve~f~~-tl~~~~~aD~-il~VvD~s~~~~~~~~~ 277 (364)
T 2qtf_A 219 ------------YAIPI--NN-RKIMLVDTVGFIRGI----PPQIVDAFFV-TLSEAKYSDA-LILVIDSTFSENLLIET 277 (364)
T ss_dssp ------------EEEEE--TT-EEEEEEECCCBCSSC----CGGGHHHHHH-HHHGGGGSSE-EEEEEETTSCHHHHHHH
T ss_pred ------------EEEEE--CC-EEEEEEeCCCchhcC----CHHHHHHHHH-HHHHHHhCCE-EEEEEECCCCcchHHHH
Confidence 01112 22 457899999986532 4455544444 3557888885 55556654332 11
Q ss_pred -HHHHHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 190 -SDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 190 -~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
..+..+++++...+.++|+|.||+|+.+.+
T Consensus 278 ~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~ 308 (364)
T 2qtf_A 278 LQSSFEILREIGVSGKPILVTLNKIDKINGD 308 (364)
T ss_dssp HHHHHHHHHHHTCCSCCEEEEEECGGGCCSC
T ss_pred HHHHHHHHHHhCcCCCCEEEEEECCCCCCch
Confidence 123456677766678999999999998654
No 86
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.37 E-value=1e-12 Score=118.27 Aligned_cols=115 Identities=17% Similarity=0.195 Sum_probs=72.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
+..+|+|+|.+|+|||||+|++++... .... .|..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~-~t~~------------------------------------------ 51 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDV--DTIS-PTLG------------------------------------------ 51 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCC--SSCC-CCSS------------------------------------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCC--Cccc-ccCc------------------------------------------
Confidence 457999999999999999999998752 1111 1111
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
+... .+.+ +...+.++||||..+. ..+...|++++|+++ +|.+++...+-....
T Consensus 52 -------~~~~--~~~~---~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~ii-~v~d~~~~~s~~~~~ 105 (186)
T 1ksh_A 52 -------FNIK--TLEH---RGFKLNIWDVGGQKSL-------------RSYWRNYFESTDGLI-WVVDSADRQRMQDCQ 105 (186)
T ss_dssp -------EEEE--EEEE---TTEEEEEEEECCSHHH-------------HTTGGGGCTTCSEEE-EEEETTCGGGHHHHH
T ss_pred -------cceE--EEEE---CCEEEEEEECCCCHhH-------------HHHHHHHhcCCCEEE-EEEECcCHHHHHHHH
Confidence 0000 1111 2367899999997542 445678889999654 555555433333332
Q ss_pred HHHHHh-C---CCCCceEEEeccCCccCCC
Q 012559 194 KLAREV-D---PTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 194 ~l~~~~-d---~~~~rti~VltK~D~~~~~ 219 (461)
.....+ . ..+.|+++|+||+|+.+..
T Consensus 106 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 135 (186)
T 1ksh_A 106 RELQSLLVEERLAGATLLIFANKQDLPGAL 135 (186)
T ss_dssp HHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred HHHHHHHhChhcCCCcEEEEEeCccCCCCC
Confidence 233332 2 2468999999999997643
No 87
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.37 E-value=1.7e-12 Score=118.91 Aligned_cols=119 Identities=21% Similarity=0.222 Sum_probs=72.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+|+|.+++|||||+++|++..+-+ .. .|+
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~-~~-----~~t---------------------------------------- 61 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAFSE-RQ-----GST---------------------------------------- 61 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC-----------------------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCCCC-CC-----CCC----------------------------------------
Confidence 45789999999999999999999887511 11 010
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccH---
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--- 190 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~--- 190 (461)
.| ..+.. ..+.+ ......+.|+||||..+. ..+...|+++++++|++ .+++......
T Consensus 62 -~~--~~~~~--~~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~iilv-~D~~~~~s~~~~~ 121 (201)
T 2hup_A 62 -IG--VDFTM--KTLEI-QGKRVKLQIWDTAGQERF-------------RTITQSYYRSANGAILA-YDITKRSSFLSVP 121 (201)
T ss_dssp ------CEEE--EEEEE-TTEEEEEEEECCTTCGGG-------------HHHHHHHHTTCSEEEEE-EETTBHHHHHTHH
T ss_pred -cc--eEEEE--EEEEE-CCEEEEEEEEECCCcHhH-------------HHHHHHHHhhCCEEEEE-EECCCHHHHHHHH
Confidence 00 00000 01111 111247899999996543 56788899999965554 4554322211
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 191 DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
.++..++.....+.++++|+||+|+.+.
T Consensus 122 ~~~~~i~~~~~~~~piilv~NK~Dl~~~ 149 (201)
T 2hup_A 122 HWIEDVRKYAGSNIVQLLIGNKSDLSEL 149 (201)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHHHHHHhcCCCCCEEEEEECCccccc
Confidence 2333344444557899999999999753
No 88
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.37 E-value=3.8e-13 Score=121.72 Aligned_cols=116 Identities=18% Similarity=0.167 Sum_probs=71.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
+..+|+|+|.+|+|||||+|+|++..+++..... |...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~-t~~~----------------------------------------- 57 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILP-TIGF----------------------------------------- 57 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCC-CSSE-----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCC-ccce-----------------------------------------
Confidence 5689999999999999999999998632322111 1110
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
.. -. +.. +...+.|+||||.... ..+...|+.++|++| +|.+++.........
T Consensus 58 --------~~--~~--~~~-~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii-~v~d~~~~~s~~~~~ 110 (190)
T 2h57_A 58 --------SI--EK--FKS-SSLSFTVFDMSGQGRY-------------RNLWEHYYKEGQAII-FVIDSSDRLRMVVAK 110 (190)
T ss_dssp --------EE--EE--EEC-SSCEEEEEEECCSTTT-------------GGGGGGGGGGCSEEE-EEEETTCHHHHHHHH
T ss_pred --------eE--EE--EEE-CCEEEEEEECCCCHHH-------------HHHHHHHHhcCCEEE-EEEECCCHHHHHHHH
Confidence 00 00 111 2367899999997653 345567889999654 555555432222222
Q ss_pred HHHHH----hCC--CCCceEEEeccCCccCC
Q 012559 194 KLARE----VDP--TGERTFGVLTKLDLMDK 218 (461)
Q Consensus 194 ~l~~~----~d~--~~~rti~VltK~D~~~~ 218 (461)
..... ... .+.++++|+||+|+.+.
T Consensus 111 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 141 (190)
T 2h57_A 111 EELDTLLNHPDIKHRRIPILFFANKMDLRDA 141 (190)
T ss_dssp HHHHHHHHSTTTTTSCCCEEEEEECTTSTTC
T ss_pred HHHHHHHhChhhccCCCeEEEEEeCcCcccC
Confidence 22222 121 47899999999999764
No 89
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.37 E-value=7.5e-13 Score=136.21 Aligned_cols=128 Identities=17% Similarity=0.266 Sum_probs=79.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCC-CccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~-~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~ 112 (461)
..++|++||.+|+|||||+|+|+|..+...+. ..+|+-..
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~--------------------------------------- 214 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAV--------------------------------------- 214 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------C---------------------------------------
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeee---------------------------------------
Confidence 56899999999999999999999987521111 01111110
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHH
Q 012559 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (461)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~ 192 (461)
...+.. +...+.||||||+.+..... +.++.........|++.+|+ +++|.+++.....++.
T Consensus 215 ------------~~~~~~---~~~~~~l~DT~G~~~~~~~~--~~~e~~~~~~~~~~~~~ad~-~llv~D~~~~~s~~~~ 276 (436)
T 2hjg_A 215 ------------DTSFTY---NQQEFVIVDTAGMRKKGKVY--ETTEKYSVLRALKAIDRSEV-VAVVLDGEEGIIEQDK 276 (436)
T ss_dssp ------------CEEEEE---TTEEEEETTHHHHTCBTTBC--CCCSHHHHHHHHHHHHHCSE-EEEEEETTTCCCHHHH
T ss_pred ------------EEEEEE---CCeEEEEEECCCcCcCcccc--chHHHHHHHHHHHHHHhCCE-EEEEEcCCcCCcHHHH
Confidence 001111 12358999999987653211 11222111223468888885 6666677766655554
Q ss_pred HHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 193 IKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
.++..+...+.++|+|+||+|+.+..
T Consensus 277 -~~~~~~~~~~~~iiiv~NK~Dl~~~~ 302 (436)
T 2hjg_A 277 -RIAGYAHEAGKAVVIVVNKWDAVDKD 302 (436)
T ss_dssp -HHHHHHHHTTCEEEEEEECGGGSCCC
T ss_pred -HHHHHHHHcCCcEEEEEECccCCCcc
Confidence 46666655689999999999998654
No 90
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.37 E-value=6.6e-13 Score=137.37 Aligned_cols=129 Identities=16% Similarity=0.255 Sum_probs=79.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
..+.|+++|.+|+|||||+|+|+|.+... ++..|.
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~-----~~~~~g---------------------------------------- 228 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVI-----VSNVAG---------------------------------------- 228 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEE-----ECC-------------------------------------------
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccc-----cCCCCC----------------------------------------
Confidence 57899999999999999999999886422 222221
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
.+ .......++. +...++||||||+.+........+ .........|+..+|+ +++|+++...+..++.
T Consensus 229 ---tt--~~~~~~~~~~---~~~~~~l~DT~G~~~~~~~~~~~e--~~~~~~~~~~~~~ad~-~llviD~~~~~~~~~~- 296 (456)
T 4dcu_A 229 ---TT--RDAVDTSFTY---NQQEFVIVDTAGMRKKGKVYETTE--KYSVLRALKAIDRSEV-VAVVLDGEEGIIEQDK- 296 (456)
T ss_dssp --------CTTSEEEEE---TTEEEEETTGGGTTTBTTBCCCCS--HHHHHHHHHHHHHCSE-EEEEEETTTCCCHHHH-
T ss_pred ---eE--EEEEEEEEEE---CCceEEEEECCCCCcCcccchHHH--HHHHHHHHHHHhhCCE-EEEEEeCCCCcCHHHH-
Confidence 00 0000011111 124789999999977543211111 1112234468888985 5566677766655543
Q ss_pred HHHHHhCCCCCceEEEeccCCccCCC
Q 012559 194 KLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
.++..+...+.++|+|+||+|+.+..
T Consensus 297 ~~~~~~~~~~~~~ilv~NK~Dl~~~~ 322 (456)
T 4dcu_A 297 RIAGYAHEAGKAVVIVVNKWDAVDKD 322 (456)
T ss_dssp HHHHHHHHTTCEEEEEEECGGGSCCC
T ss_pred HHHHHHHHcCCCEEEEEEChhcCCCc
Confidence 35555555789999999999998654
No 91
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.36 E-value=9.6e-13 Score=118.76 Aligned_cols=114 Identities=15% Similarity=0.175 Sum_probs=70.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
+..+|+|+|.+|+|||||+|+|++..+.. ..|+
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-------~~~t---------------------------------------- 47 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVH-------TSPT---------------------------------------- 47 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEE-------EECC----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCc-------CcCC----------------------------------------
Confidence 45899999999999999999999876510 0111
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
.| +... .+.+ +...+.++||||..+. ..+...|+.++|++| +|.+++...+-....
T Consensus 48 -~~----~~~~--~~~~---~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii-~v~d~~~~~s~~~~~ 103 (187)
T 1zj6_A 48 -IG----SNVE--EIVI---NNTRFLMWDIGGQESL-------------RSSWNTYYTNTEFVI-VVVDSTDRERISVTR 103 (187)
T ss_dssp -SC----SSCE--EEEE---TTEEEEEEECCC-----------------CGGGHHHHTTCCEEE-EEEETTCTTTHHHHH
T ss_pred -Cc----cceE--EEEE---CCEEEEEEECCCCHhH-------------HHHHHHHhcCCCEEE-EEEeCCCHHHHHHHH
Confidence 01 1111 1112 2367899999998653 344568889999655 455555432223333
Q ss_pred HHHHHhC----CCCCceEEEeccCCccCC
Q 012559 194 KLAREVD----PTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 194 ~l~~~~d----~~~~rti~VltK~D~~~~ 218 (461)
.....+. ..+.++++|+||+|+.+.
T Consensus 104 ~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (187)
T 1zj6_A 104 EELYKMLAHEDLRKAGLLIFANKQDVKEC 132 (187)
T ss_dssp HHHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHhchhhCCCeEEEEEECCCCcCC
Confidence 3333332 257899999999999754
No 92
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.36 E-value=2.1e-12 Score=116.64 Aligned_cols=118 Identities=19% Similarity=0.215 Sum_probs=64.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
.-.+|+|+|.+|+|||||+|+|++..+.+... .++.....
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~~--------------------------------------- 59 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYD-PTIEDSYR--------------------------------------- 59 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCC-TTCCEEEE---------------------------------------
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccC-CccceEEE---------------------------------------
Confidence 44689999999999999999999886522111 11111000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHH-
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA- 192 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~- 192 (461)
..+.+ ......+.||||||.... ..+...|+..+++++ +|.++.......+.
T Consensus 60 ------------~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~ 112 (190)
T 3con_A 60 ------------KQVVI-DGETCLLDILDTAGQEEY-------------SAMRDQYMRTGEGFL-CVFAINNSKSFADIN 112 (190)
T ss_dssp ------------EEEEE-TTEEEEEEEEECCC------------------------CTTCSEEE-EEEETTCHHHHHHHH
T ss_pred ------------EEEEE-CCEEEEEEEEECCChHHH-------------HHHHHHhhCcCCEEE-EEEECcCHHHHHHHH
Confidence 00011 111245889999996543 456678899999655 45454433222222
Q ss_pred --HHHHHHh-CCCCCceEEEeccCCccCC
Q 012559 193 --IKLAREV-DPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 193 --l~l~~~~-d~~~~rti~VltK~D~~~~ 218 (461)
+..+... ...+.++++|+||+|+.+.
T Consensus 113 ~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~ 141 (190)
T 3con_A 113 LYREQIKRVKDSDDVPMVLVGNKCDLPTR 141 (190)
T ss_dssp HHHHHHHHHHTCSCCCEEEEEECTTCSCC
T ss_pred HHHHHHHHHhCCCCCeEEEEEECCcCCcc
Confidence 2222332 2347899999999999763
No 93
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.36 E-value=6.7e-13 Score=116.96 Aligned_cols=119 Identities=16% Similarity=0.182 Sum_probs=71.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+|+|.+|+|||||+|+|++..+.+.... |....
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~--~~~~~---------------------------------------- 42 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQES--TIGAA---------------------------------------- 42 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCC--CSSEE----------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCC--ccceE----------------------------------------
Confidence 346899999999999999999998765221111 00000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHH-
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA- 192 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~- 192 (461)
+ ....+.+ ......+.++||||.... ..+...|+.++|++| +|.+++........
T Consensus 43 -------~--~~~~~~~-~~~~~~~~~~D~~G~~~~-------------~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~ 98 (170)
T 1r2q_A 43 -------F--LTQTVCL-DDTTVKFEIWDTAGQERY-------------HSLAPMYYRGAQAAI-VVYDITNEESFARAK 98 (170)
T ss_dssp -------E--EEEEEEE-TTEEEEEEEEEECCSGGG-------------GGGHHHHHTTCSEEE-EEEETTCHHHHHHHH
T ss_pred -------E--EEEEEEE-CCEEEEEEEEeCCCcHHh-------------hhhhHHhccCCCEEE-EEEECCCHHHHHHHH
Confidence 0 0000111 111246889999996543 345678899999655 55555433222222
Q ss_pred --HHHHHHhCCCCCceEEEeccCCccCC
Q 012559 193 --IKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 193 --l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
+..+......+.++++|.||+|+.+.
T Consensus 99 ~~~~~~~~~~~~~~~iilv~nK~Dl~~~ 126 (170)
T 1r2q_A 99 NWVKELQRQASPNIVIALSGNKADLANK 126 (170)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHhcCCCCcEEEEEECccCccc
Confidence 22233333446788999999999754
No 94
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.36 E-value=5.1e-13 Score=122.29 Aligned_cols=119 Identities=18% Similarity=0.231 Sum_probs=68.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+|+|.+++|||||+|+|++..+.+......+.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~------------------------------------------- 60 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGV------------------------------------------- 60 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC------------C-------------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccc-------------------------------------------
Confidence 4678999999999999999999998762211110000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH--
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD-- 191 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~-- 191 (461)
.+. ...+.+ ......+.|+||||.... ..+...|++++|++|+ |.+++.......
T Consensus 61 ------~~~--~~~~~~-~~~~~~l~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~ 117 (200)
T 2o52_A 61 ------EFG--SRVVNV-GGKTVKLQIWDTAGQERF-------------RSVTRSYYRGAAGALL-VYDITSRETYNSLA 117 (200)
T ss_dssp ------CEE--EEEEEE-TTEEEEEEEECCTTHHHH-------------SCCCHHHHTTCSEEEE-EEETTCHHHHHTHH
T ss_pred ------eeE--EEEEEE-CCeeeEEEEEcCCCcHhH-------------HHHHHHHhccCCEEEE-EEECcCHHHHHHHH
Confidence 000 001111 111257899999995432 3346678899996554 445543222222
Q ss_pred -HHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 192 -AIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 192 -~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
++..+......+.++++|+||+|+.+.
T Consensus 118 ~~~~~~~~~~~~~~piilv~nK~Dl~~~ 145 (200)
T 2o52_A 118 AWLTDARTLASPNIVVILCGNKKDLDPE 145 (200)
T ss_dssp HHHHHHHHHTCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHhcCCCCcEEEEEECCCcccc
Confidence 222334444557899999999999754
No 95
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.35 E-value=8.9e-12 Score=111.24 Aligned_cols=123 Identities=20% Similarity=0.202 Sum_probs=71.9
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCC-CccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~-~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
.+|+++|.+|+|||||+|+|+|..+...+. ..+|+-..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~----------------------------------------- 43 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVL----------------------------------------- 43 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCE-----------------------------------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceecee-----------------------------------------
Confidence 579999999999999999999976411111 01111110
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccc--cHHH
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIA--TSDA 192 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~--~~~~ 192 (461)
. -.+.+ +...+.++||||+.+.. ..........+..|+.++|.++ +|.+++...+ ...+
T Consensus 44 --------~--~~~~~---~~~~~~l~Dt~G~~~~~-----~~~~~~~~~~~~~~~~~ad~~i-~v~D~~~~~s~~~~~~ 104 (172)
T 2gj8_A 44 --------R--EHIHI---DGMPLHIIDTAGLREAS-----DEVERIGIERAWQEIEQADRVL-FMVDGTTTDAVDPAEI 104 (172)
T ss_dssp --------E--EEEEE---TTEEEEEEECCCCSCCS-----SHHHHHHHHHHHHHHHTCSEEE-EEEETTTCCCCSHHHH
T ss_pred --------e--EEEEE---CCeEEEEEECCCcccch-----hHHHHHHHHHHHHHHHhCCEEE-EEEECCCCCCHHHHHH
Confidence 0 01111 12357899999987631 1222111223456788999654 4555543222 2233
Q ss_pred HHHHHHhCCCCCceEEEeccCCccCC
Q 012559 193 IKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
...+....+.+.|+++|+||+|+.+.
T Consensus 105 ~~~~~~~~~~~~p~ilv~NK~Dl~~~ 130 (172)
T 2gj8_A 105 WPEFIARLPAKLPITVVRNKADITGE 130 (172)
T ss_dssp CHHHHHHSCTTCCEEEEEECHHHHCC
T ss_pred HHHHHHhcccCCCEEEEEECccCCcc
Confidence 33444445557899999999999643
No 96
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.35 E-value=7e-13 Score=118.70 Aligned_cols=119 Identities=19% Similarity=0.138 Sum_probs=69.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
..++|+|+|.+|+|||||+|+|++..+ +.....++.....
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~--------------------------------------- 44 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQF-VDSYDPTIENTFT--------------------------------------- 44 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEE---------------------------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCCccccEE---------------------------------------
Confidence 457999999999999999999997665 2221111111100
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
..+ ........+.|+||||..... .+...|+.++|++++ |.+++.........
T Consensus 45 ------------~~~-~~~~~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~~~~i~-v~d~~~~~s~~~~~ 97 (181)
T 3t5g_A 45 ------------KLI-TVNGQEYHLQLVDTAGQDEYS-------------IFPQTYSIDINGYIL-VYSVTSIKSFEVIK 97 (181)
T ss_dssp ------------EEE-EETTEEEEEEEEECCCCCTTC-------------CCCGGGTTTCSEEEE-EEETTCHHHHHHHH
T ss_pred ------------EEE-EECCEEEEEEEEeCCCchhhh-------------HHHHHHHhcCCEEEE-EEECCCHHHHHHHH
Confidence 000 011112467899999977642 234568888896555 44544322222222
Q ss_pred ----HHHHHhCCCCCceEEEeccCCccCCC
Q 012559 194 ----KLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 194 ----~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
.+.+.....+.|+++|+||+|+.+..
T Consensus 98 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 127 (181)
T 3t5g_A 98 VIHGKLLDMVGKVQIPIMLVGNKKDLHMER 127 (181)
T ss_dssp HHHHHHHHHC----CCEEEEEECTTCTTTC
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccchhcc
Confidence 23344444578999999999997543
No 97
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.35 E-value=1.2e-12 Score=119.43 Aligned_cols=118 Identities=19% Similarity=0.244 Sum_probs=70.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+|+|.+++|||||+|+|++..+.+... |+
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~------~t---------------------------------------- 60 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENIS------AT---------------------------------------- 60 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------------------------------------------------
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCC------CC----------------------------------------
Confidence 46899999999999999999999887521100 00
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---H
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---S 190 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~---~ 190 (461)
.| ..+. ...+.+ ......+.|+||||.... ..+...|+.++|++|+ |.+++..... .
T Consensus 61 -~~--~~~~--~~~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~iil-v~d~~~~~s~~~~~ 120 (199)
T 2p5s_A 61 -LG--VDFQ--MKTLIV-DGERTVLQLWDTAGQERF-------------RSIAKSYFRKADGVLL-LYDVTCEKSFLNIR 120 (199)
T ss_dssp -------CE--EEEEEE-TTEEEEEEEEECTTCTTC-------------HHHHHHHHHHCSEEEE-EEETTCHHHHHTHH
T ss_pred -cc--ceeE--EEEEEE-CCEEEEEEEEECCCCcch-------------hhhHHHHHhhCCEEEE-EEECCChHHHHHHH
Confidence 00 0000 011111 112246899999996553 5667888999996555 4555433222 2
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCccC
Q 012559 191 DAIKLAREVDPTGERTFGVLTKLDLMD 217 (461)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~ 217 (461)
.++..++.....+.|+++|+||+|+.+
T Consensus 121 ~~~~~i~~~~~~~~piilv~NK~Dl~~ 147 (199)
T 2p5s_A 121 EWVDMIEDAAHETVPIMLVGNKADIRD 147 (199)
T ss_dssp HHHHHHHHHC---CCEEEEEECGGGHH
T ss_pred HHHHHHHHhcCCCCCEEEEEECccccc
Confidence 233344555555789999999999973
No 98
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.35 E-value=1.1e-11 Score=112.03 Aligned_cols=115 Identities=20% Similarity=0.172 Sum_probs=71.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
+-.+|+|+|.+|+|||||+|+|++..+.+ ... .|....
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~-~t~~~~---------------------------------------- 58 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNE-DMI-PTVGFN---------------------------------------- 58 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCC-SCC-CCCSEE----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCC-ccC-CCCcee----------------------------------------
Confidence 34689999999999999999999877621 111 010000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
... +. .....+.|+||||..+. ..+...|+.++|++| +|.+++.........
T Consensus 59 -----------~~~--~~-~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii-~v~D~~~~~s~~~~~ 110 (188)
T 1zd9_A 59 -----------MRK--IT-KGNVTIKLWDIGGQPRF-------------RSMWERYCRGVSAIV-YMVDAADQEKIEASK 110 (188)
T ss_dssp -----------EEE--EE-ETTEEEEEEEECCSHHH-------------HTTHHHHHTTCSEEE-EEEETTCGGGHHHHH
T ss_pred -----------EEE--EE-eCCEEEEEEECCCCHhH-------------HHHHHHHHccCCEEE-EEEECCCHHHHHHHH
Confidence 000 11 12357889999996442 456778899999655 455554332223332
Q ss_pred HHHHHh-C---CCCCceEEEeccCCccCC
Q 012559 194 KLAREV-D---PTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 194 ~l~~~~-d---~~~~rti~VltK~D~~~~ 218 (461)
.....+ . ..+.++++|+||+|+.+.
T Consensus 111 ~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 111 NELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp HHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred HHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 223322 2 257899999999999764
No 99
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.35 E-value=1.3e-13 Score=123.74 Aligned_cols=119 Identities=16% Similarity=0.200 Sum_probs=51.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+|+|.+++|||||+++|++..+ +... .|+
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~-~~~~-----~~t---------------------------------------- 40 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAF-NSTF-----IST---------------------------------------- 40 (183)
T ss_dssp EEEEEEEECCCCC-----------------CH-----HHH----------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC-CCCC-----CCc----------------------------------------
Confidence 457899999999999999999998765 1110 000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH--
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD-- 191 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~-- 191 (461)
.| ..+.. ..+.+ ......+.|+||||.... ..+...|+.++|++| +|.+++...+-..
T Consensus 41 -~~--~~~~~--~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~ 100 (183)
T 2fu5_C 41 -IG--IDFKI--RTIEL-DGKRIKLQIWDTAGQERF-------------RTITTAYYRGAMGIM-LVYDITNEKSFDNIR 100 (183)
T ss_dssp -HC--EEEEE--EEEEE-TTEEEEEEEEEC----------------------CCTTTTTCSEEE-EEEETTCHHHHHHHH
T ss_pred -cc--ceeEE--EEEEE-CCEEEEEEEEcCCCChhh-------------hhhHHHHHhcCCEEE-EEEECcCHHHHHHHH
Confidence 00 00000 01111 111256899999996543 345667888999655 4555544322222
Q ss_pred -HHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 192 -AIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 192 -~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
++..+......+.|+++|+||+|+.+.
T Consensus 101 ~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (183)
T 2fu5_C 101 NWIRNIEEHASADVEKMILGNKCDVNDK 128 (183)
T ss_dssp HHHHHHHHHSCTTCEEEEEEEC--CCSC
T ss_pred HHHHHHHHhcCCCCCEEEEEECccCCcc
Confidence 223333433457899999999999754
No 100
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.34 E-value=1.4e-13 Score=136.71 Aligned_cols=125 Identities=22% Similarity=0.244 Sum_probs=72.6
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
+|.|++||.+|||||||||+|++.++.......+|..|..
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~---------------------------------------- 197 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNL---------------------------------------- 197 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCE----------------------------------------
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceE----------------------------------------
Confidence 6789999999999999999999875311111223333321
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCC---ccccHH
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ---DIATSD 191 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~---d~~~~~ 191 (461)
+ .+..++...++|+||||+...+... ..+. ....+++..++.+| +|+|++. .-...+
T Consensus 198 -g------------~v~~~~~~~~~l~DtPG~i~~a~~~--~~l~----~~fl~~i~~~d~ll-~VvD~s~~~~~~~~~~ 257 (342)
T 1lnz_A 198 -G------------MVETDDGRSFVMADLPGLIEGAHQG--VGLG----HQFLRHIERTRVIV-HVIDMSGLEGRDPYDD 257 (342)
T ss_dssp -E------------EEECSSSCEEEEEEHHHHHHHTTCT--TTTH----HHHHHHHHHCCEEE-EEEESSCSSCCCHHHH
T ss_pred -E------------EEEeCCCceEEEecCCCCccccccc--chhH----HHHHHHHHhccEEE-EEEECCcccccChHHH
Confidence 0 0222223578999999987632211 1121 22234456688544 5555542 111122
Q ss_pred ---HHHHHHHhCC--CCCceEEEeccCCccCCC
Q 012559 192 ---AIKLAREVDP--TGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 192 ---~l~l~~~~d~--~~~rti~VltK~D~~~~~ 219 (461)
+...++.+.+ ...|.++|+||+|+.+..
T Consensus 258 ~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~ 290 (342)
T 1lnz_A 258 YLTINQELSEYNLRLTERPQIIVANKMDMPEAA 290 (342)
T ss_dssp HHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH
T ss_pred HHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH
Confidence 2233344443 478999999999998543
No 101
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.32 E-value=5.9e-12 Score=114.68 Aligned_cols=120 Identities=19% Similarity=0.212 Sum_probs=75.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhh
Q 012559 33 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (461)
Q Consensus 33 ~~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~ 112 (461)
....+|+++|..++|||||++.++|. +.+. . |
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~-~---~------------------------------------------- 49 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHK-MSPN-E---T------------------------------------------- 49 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSC-CCGG-G---G-------------------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhc-CCCc-c---e-------------------------------------------
Confidence 36789999999999999999999986 3221 0 0
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHH---HHHhcCCCeEEEEEecCCCcc--
Q 012559 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMV---RSYVEKPSCIILAISPANQDI-- 187 (461)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v---~~yi~~~~~iIL~V~~a~~d~-- 187 (461)
.+ ..+....+...+.+.....+.|+||||..+.. .+. ..|+++++++|+ |.+++..+
T Consensus 50 --~~--~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------------~~~~~~~~~~~~~~~~i~-v~d~~~~~~~ 111 (196)
T 3llu_A 50 --LF--LESTNKIYKDDISNSSFVNFQIWDFPGQMDFF-------------DPTFDYEMIFRGTGALIY-VIDAQDDYME 111 (196)
T ss_dssp --GG--CCCCCSCEEEEECCTTSCCEEEEECCSSCCTT-------------CTTCCHHHHHHTCSEEEE-EEETTSCCHH
T ss_pred --ee--eccccceeeeeccCCCeeEEEEEECCCCHHHH-------------hhhhhcccccccCCEEEE-EEECCCchHH
Confidence 01 11223333333444455789999999976541 223 678889996554 55555431
Q ss_pred ccHHHHHHHHHh--CCCCCceEEEeccCCccCC
Q 012559 188 ATSDAIKLAREV--DPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 188 ~~~~~l~l~~~~--d~~~~rti~VltK~D~~~~ 218 (461)
.......++.++ ...+.++++|.||+|+..+
T Consensus 112 ~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~ 144 (196)
T 3llu_A 112 ALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD 144 (196)
T ss_dssp HHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEeccccCch
Confidence 112223344443 2347899999999998753
No 102
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.32 E-value=5.3e-13 Score=122.06 Aligned_cols=68 Identities=21% Similarity=0.188 Sum_probs=42.5
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH---HHHHHHHhCC---CCCceEEE
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD---AIKLAREVDP---TGERTFGV 209 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~---~l~l~~~~d~---~~~rti~V 209 (461)
..+.|+||||.... ..+...|+.++|++| +|.+++....... ++..+....+ .+.|+++|
T Consensus 73 ~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv 138 (208)
T 2yc2_C 73 VELFLLDTAGSDLY-------------KEQISQYWNGVYYAI-LVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLV 138 (208)
T ss_dssp EEEEEEETTTTHHH-------------HHHHSTTCCCCCEEE-EEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEE
T ss_pred EEEEEEECCCcHHH-------------HHHHHHHHhhCcEEE-EEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEE
Confidence 56899999997542 567888999999655 5555554332222 2233333344 57899999
Q ss_pred eccCCccC
Q 012559 210 LTKLDLMD 217 (461)
Q Consensus 210 ltK~D~~~ 217 (461)
+||+|+.+
T Consensus 139 ~nK~Dl~~ 146 (208)
T 2yc2_C 139 ANKTDLPP 146 (208)
T ss_dssp EECC----
T ss_pred EECcccch
Confidence 99999976
No 103
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.32 E-value=2.6e-12 Score=115.08 Aligned_cols=114 Identities=18% Similarity=0.206 Sum_probs=68.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
+..+|+|+|.+|||||||+++|++..+.+. .|+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~-------~~t---------------------------------------- 49 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTT-------KPT---------------------------------------- 49 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEE-------CSS----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCcc-------CCc----------------------------------------
Confidence 458999999999999999999998754110 010
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
.| +... .+.+ +...+.++||||.... ..+...|+.++|. +++|.+++....-....
T Consensus 50 -~~----~~~~--~~~~---~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~-ii~v~d~~~~~s~~~~~ 105 (183)
T 1moz_A 50 -IG----FNVE--TLSY---KNLKLNVWDLGGQTSI-------------RPYWRCYYADTAA-VIFVVDSTDKDRMSTAS 105 (183)
T ss_dssp -TT----CCEE--EEEE---TTEEEEEEEEC----C-------------CTTGGGTTTTEEE-EEEEEETTCTTTHHHHH
T ss_pred -Cc----cceE--EEEE---CCEEEEEEECCCCHhH-------------HHHHHHHhccCCE-EEEEEECCCHHHHHHHH
Confidence 01 1111 1111 2367899999998764 2235578888885 44555555433333333
Q ss_pred HHHHHhC----CCCCceEEEeccCCccCC
Q 012559 194 KLAREVD----PTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 194 ~l~~~~d----~~~~rti~VltK~D~~~~ 218 (461)
.....+. ..+.|+++|+||+|+.+.
T Consensus 106 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 106 KELHLMLQEEELQDAALLVFANKQDQPGA 134 (183)
T ss_dssp HHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred HHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence 3334332 357899999999999754
No 104
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.32 E-value=2.2e-12 Score=117.34 Aligned_cols=117 Identities=17% Similarity=0.166 Sum_probs=70.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+|+|.+++|||||+++|++..+.+.... ++....
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~-t~~~~~---------------------------------------- 65 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDP-TLESTY---------------------------------------- 65 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCT-TCCEEE----------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcccCC-CCCceE----------------------------------------
Confidence 457899999999999999999999876221111 000000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccH---
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--- 190 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~--- 190 (461)
...+.+ ......+.|+||||... ..+...|+..++++|+ |.+++......
T Consensus 66 -----------~~~~~~-~~~~~~~~l~Dt~G~~~--------------~~~~~~~~~~~d~iil-v~D~~~~~s~~~~~ 118 (196)
T 2atv_A 66 -----------RHQATI-DDEVVSMEILDTAGQED--------------TIQREGHMRWGEGFVL-VYDITDRGSFEEVL 118 (196)
T ss_dssp -----------EEEEEE-TTEEEEEEEEECCCCCC--------------CHHHHHHHHHCSEEEE-EEETTCHHHHHTHH
T ss_pred -----------EEEEEE-CCEEEEEEEEECCCCCc--------------ccchhhhhccCCEEEE-EEECcCHHHHHHHH
Confidence 000001 11224688999999764 2456778888896554 45554322211
Q ss_pred HHHHHHHH-hCCCCCceEEEeccCCccCC
Q 012559 191 DAIKLARE-VDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 191 ~~l~l~~~-~d~~~~rti~VltK~D~~~~ 218 (461)
.++..+.. ....+.|+++|+||+|+.+.
T Consensus 119 ~~~~~i~~~~~~~~~piilv~NK~Dl~~~ 147 (196)
T 2atv_A 119 PLKNILDEIKKPKNVTLILVGNKADLDHS 147 (196)
T ss_dssp HHHHHHHHHHTTSCCCEEEEEECGGGGGG
T ss_pred HHHHHHHHhhCCCCCcEEEEEECcccccc
Confidence 12222333 33457899999999999764
No 105
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.31 E-value=1.1e-12 Score=118.52 Aligned_cols=114 Identities=21% Similarity=0.215 Sum_probs=70.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
+..+|+|+|.+|+|||||+|+|++..+.+ ..|+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-------~~~t---------------------------------------- 53 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVT-------TVPT---------------------------------------- 53 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEE-------ECSS----------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCC-------cCCC----------------------------------------
Confidence 45789999999999999999999876511 1111
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
.| +... .+.+ +...+.++||||..+.. .+...|++++|++| +|.+++....-....
T Consensus 54 -~~----~~~~--~~~~---~~~~~~~~Dt~G~~~~~-------------~~~~~~~~~~d~ii-~v~d~~~~~s~~~~~ 109 (189)
T 2x77_A 54 -VG----VNLE--TLQY---KNISFEVWDLGGQTGVR-------------PYWRCYFSDTDAVI-YVVDSTDRDRMGVAK 109 (189)
T ss_dssp -TT----CCEE--EEEE---TTEEEEEEEECCSSSSC-------------CCCSSSSTTCCEEE-EEEETTCCTTHHHHH
T ss_pred -Cc----eEEE--EEEE---CCEEEEEEECCCCHhHH-------------HHHHHHhhcCCEEE-EEEeCCCHHHHHHHH
Confidence 00 0000 1111 23678999999986542 22446788889655 555555432223332
Q ss_pred HHHHHh-C---CCCCceEEEeccCCccCC
Q 012559 194 KLAREV-D---PTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 194 ~l~~~~-d---~~~~rti~VltK~D~~~~ 218 (461)
.....+ . ..+.|+++|+||+|+.+.
T Consensus 110 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 110 HELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp HHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 222222 2 247899999999999764
No 106
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.31 E-value=8.7e-12 Score=111.87 Aligned_cols=114 Identities=15% Similarity=0.172 Sum_probs=72.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+|+|.+|+|||||+|+|++..+ . . ..|+
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~----~--~~~t---------------------------------------- 52 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEV-V----H--TSPT---------------------------------------- 52 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSC-E----E--EECC----------------------------------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC-C----c--cCCc----------------------------------------
Confidence 567899999999999999999999865 1 0 0010
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
.| +.. ..+.+ +...+.++||||..+. ..+...|+.++|++| +|.+++....-....
T Consensus 53 -~~----~~~--~~~~~---~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii-~v~D~~~~~s~~~~~ 108 (181)
T 2h17_A 53 -IG----SNV--EEIVI---NNTRFLMWDIGGQESL-------------RSSWNTYYTNTEFVI-VVVDSTDRERISVTR 108 (181)
T ss_dssp -SS----SSC--EEEEE---TTEEEEEEEESSSGGG-------------TCGGGGGGTTCCEEE-EEEETTCTTTHHHHH
T ss_pred -Cc----eee--EEEEE---CCEEEEEEECCCCHhH-------------HHHHHHHhccCCEEE-EEEECCCHHHHHHHH
Confidence 01 111 11222 2367899999998653 334568889999654 555555433333333
Q ss_pred HHHHHh-C---CCCCceEEEeccCCccCC
Q 012559 194 KLAREV-D---PTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 194 ~l~~~~-d---~~~~rti~VltK~D~~~~ 218 (461)
.....+ . ..+.++++|+||+|+.+.
T Consensus 109 ~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 137 (181)
T 2h17_A 109 EELYKMLAHEDLRKAGLLIFANKQDVKEC 137 (181)
T ss_dssp HHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHhChhhCCCeEEEEEECCCcccC
Confidence 333332 2 357899999999999764
No 107
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.31 E-value=8.2e-12 Score=120.04 Aligned_cols=125 Identities=19% Similarity=0.265 Sum_probs=72.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCC-ccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~ 112 (461)
..++|+|+|.+|+|||||+|+|+|..+.+.+.. .+|+.+..
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~-------------------------------------- 79 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVM-------------------------------------- 79 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEE--------------------------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEE--------------------------------------
Confidence 458999999999999999999999887443322 22222221
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhc--CCCeEEEEEecCCC-cccc
Q 012559 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE--KPSCIILAISPANQ-DIAT 189 (461)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~--~~~~iIL~V~~a~~-d~~~ 189 (461)
..+. .+...++||||||+.+.. .........+.+|+. .+|+++ +|.+.+. .+..
T Consensus 80 ---------------~~~~-~~~~~l~iiDTpG~~~~~------~~~~~~~~~i~~~~~~~~~d~il-~v~~~d~~~~~~ 136 (270)
T 1h65_A 80 ---------------VSRS-RAGFTLNIIDTPGLIEGG------YINDMALNIIKSFLLDKTIDVLL-YVDRLDAYRVDN 136 (270)
T ss_dssp ---------------EEEE-ETTEEEEEEECCCSEETT------EECHHHHHHHHHHTTTCEECEEE-EEEESSCCCCCH
T ss_pred ---------------EEEe-eCCeEEEEEECCCCCCCc------cchHHHHHHHHHHhhcCCCCEEE-EEEeCCCCcCCH
Confidence 1111 123568999999997642 111222334455653 567554 4433322 3332
Q ss_pred H--HHHHHHHHhCCCC--CceEEEeccCCccCCC
Q 012559 190 S--DAIKLAREVDPTG--ERTFGVLTKLDLMDKG 219 (461)
Q Consensus 190 ~--~~l~l~~~~d~~~--~rti~VltK~D~~~~~ 219 (461)
. .++..+....... .++++|+||+|+.++.
T Consensus 137 ~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 137 LDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp HHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred HHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 2 2333333321212 5899999999997543
No 108
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.30 E-value=3.4e-12 Score=115.42 Aligned_cols=69 Identities=13% Similarity=0.108 Sum_probs=44.9
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc------HHHHHHHHHh--CCCCCceE
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT------SDAIKLAREV--DPTGERTF 207 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~------~~~l~l~~~~--d~~~~rti 207 (461)
..+.|+||||.... ..+...|++++|++|+ |.+++..... .....++.++ ...+.|++
T Consensus 74 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~-v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~pii 139 (198)
T 3t1o_A 74 TRFHLYTVPGQVFY-------------NASRKLILRGVDGIVF-VADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIV 139 (198)
T ss_dssp EEEEEEECCSCCSC-------------SHHHHHHTTTCCEEEE-EEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEE
T ss_pred eEEEEEeCCChHHH-------------HHHHHHHHhcCCEEEE-EEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEE
Confidence 46889999997654 4567789999996554 5555422111 1122233443 23578999
Q ss_pred EEeccCCccCC
Q 012559 208 GVLTKLDLMDK 218 (461)
Q Consensus 208 ~VltK~D~~~~ 218 (461)
+|+||+|+.+.
T Consensus 140 lv~NK~Dl~~~ 150 (198)
T 3t1o_A 140 IQVNKRDLPDA 150 (198)
T ss_dssp EEEECTTSTTC
T ss_pred EEEEchhcccc
Confidence 99999999754
No 109
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.30 E-value=3e-12 Score=115.24 Aligned_cols=120 Identities=23% Similarity=0.349 Sum_probs=72.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
..+.|+++|.+|+|||||+++|+|..+.+.....+|..+.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~---------------------------------------- 45 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKK---------------------------------------- 45 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEE----------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccce----------------------------------------
Confidence 4578999999999999999999997652211111111111
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhc--CCCeEEEEEecCCCccccHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE--KPSCIILAISPANQDIATSD 191 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~--~~~~iIL~V~~a~~d~~~~~ 191 (461)
... +.. +...+.++||||..... +.... +.+...|+. .++. +++|.++.. . ..
T Consensus 46 -----------~~~--~~~-~~~~~~l~Dt~G~~~~~----~~~~~---~~~~~~~~~~~~~~~-~i~v~d~~~-~--~~ 100 (188)
T 2wjg_A 46 -----------EGE--FEY-NGEKFKVVDLPGVYSLT----ANSID---EIIARDYIINEKPDL-VVNIVDATA-L--ER 100 (188)
T ss_dssp -----------EEE--EEE-TTEEEEEEECCCCSCCS----SSSHH---HHHHHHHHHHHCCSE-EEEEEEGGG-H--HH
T ss_pred -----------EEE--EEe-CCcEEEEEECCCcCccc----cccHH---HHHHHHHHhccCCCE-EEEEecchh-H--HH
Confidence 001 111 12568999999987753 12222 344556664 4774 555666542 1 22
Q ss_pred HHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
...+..++...+.|+++|+||+|+...
T Consensus 101 ~~~~~~~~~~~~~piilv~nK~Dl~~~ 127 (188)
T 2wjg_A 101 NLYLTLQLMEMGANLLLALNKMDLAKS 127 (188)
T ss_dssp HHHHHHHHHTTTCCEEEEEECHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEEhhhcccc
Confidence 233445554567899999999998743
No 110
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.30 E-value=1.9e-12 Score=117.75 Aligned_cols=114 Identities=15% Similarity=0.218 Sum_probs=68.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
+-.+|+|+|.+++|||||+++|++..+ +. ..|+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~-~~------~~~t---------------------------------------- 60 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEI-VT------TIPT---------------------------------------- 60 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCC-EE------EEEE----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCc-cc------cCCc----------------------------------------
Confidence 457899999999999999999998765 21 1121
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
.| +... . +.. ....+.++||||.... ..+...|+.++|++| +|.+++....-....
T Consensus 61 -~~----~~~~--~--~~~-~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii-lv~D~~~~~s~~~~~ 116 (192)
T 2b6h_A 61 -IG----FNVE--T--VEY-KNICFTVWDVGGQDKI-------------RPLWRHYFQNTQGLI-FVVDSNDRERVQESA 116 (192)
T ss_dssp -TT----EEEE--E--EEE-TTEEEEEEECC------------------CTTHHHHHHTCCEEE-EEEETTCGGGHHHHH
T ss_pred -Cc----eeEE--E--EEE-CCEEEEEEECCCCHhH-------------HHHHHHHhccCCEEE-EEEECCCHHHHHHHH
Confidence 00 0000 0 111 2367899999997653 345667889999655 555555433333333
Q ss_pred HHHHHh-C---CCCCceEEEeccCCccCC
Q 012559 194 KLAREV-D---PTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 194 ~l~~~~-d---~~~~rti~VltK~D~~~~ 218 (461)
.....+ . ..+.|+++|+||+|+.+.
T Consensus 117 ~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 117 DELQKMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp HHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence 333332 2 236899999999999754
No 111
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.30 E-value=2.4e-12 Score=116.42 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDF 60 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~ 60 (461)
..-+|+|+|.+++|||||++++++..|
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~ 46 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRF 46 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCC
Confidence 345899999999999999999998875
No 112
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.30 E-value=1.1e-12 Score=122.09 Aligned_cols=119 Identities=16% Similarity=0.214 Sum_probs=70.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+|+|.+++|||||+++|++..+.+......
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~--------------------------------------------- 46 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTI--------------------------------------------- 46 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC---------------------------------------------------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcc---------------------------------------------
Confidence 45789999999999999999999987622111000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHH-
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA- 192 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~- 192 (461)
| ..+. ...+.+ ......+.|+||||.... ..+...|+..++. +++|.+++........
T Consensus 47 --~--~~~~--~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~-vilV~D~~~~~s~~~~~ 105 (223)
T 3cpj_B 47 --G--VEFA--TRTLEI-EGKRIKAQIWDTAGQERY-------------RAITSAYYRGAVG-ALIVYDISKSSSYENCN 105 (223)
T ss_dssp --C--CSEE--EEEEEE-TTEEEEEEEECCTTTTTT-------------TCCCGGGTTTCCE-EEEEEC-CCHHHHHHHH
T ss_pred --c--ceeE--EEEEEE-CCEEEEEEEEECCCccch-------------hhhHHHHhccCCE-EEEEEeCCCHHHHHHHH
Confidence 0 0000 001111 111246899999997653 2345678889986 4555565543332322
Q ss_pred --HHHHHHhCCCCCceEEEeccCCccCC
Q 012559 193 --IKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 193 --l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
+..++.....+.++++|+||+|+.+.
T Consensus 106 ~~l~~i~~~~~~~~piilv~nK~Dl~~~ 133 (223)
T 3cpj_B 106 HWLSELRENADDNVAVGLIGNKSDLAHL 133 (223)
T ss_dssp HHHHHHHHHCC--CEEEEEECCGGGGGG
T ss_pred HHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 33344444557899999999999753
No 113
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.30 E-value=5.2e-12 Score=128.79 Aligned_cols=161 Identities=17% Similarity=0.189 Sum_probs=88.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
..+.|+|+|..|+|||||+|+|+|..+.+.+ +.+.
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~-----~~~g---------------------------------------- 67 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVS-----DYAG---------------------------------------- 67 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC--------------------------------------------------------
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccC-----CCCC----------------------------------------
Confidence 5689999999999999999999998762221 1110
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
.+.+.....+.......+.||||||+.+...-+. .. ...+..|+.++|. +++|+++........
T Consensus 68 -------tT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~-~~-----~~~~~~~l~~aD~-vllVvD~~~~~~~~~-- 131 (423)
T 3qq5_A 68 -------TTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGR-LR-----VEKARRVFYRADC-GILVTDSAPTPYEDD-- 131 (423)
T ss_dssp ---------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCC-CC-----HHHHHHHHTSCSE-EEEECSSSCCHHHHH--
T ss_pred -------eeeeeEEEEEEECCCCeEEEEECcCCCcccchhH-HH-----HHHHHHHHhcCCE-EEEEEeCCChHHHHH--
Confidence 0011111112222223789999999987532211 11 2336678899996 445556632222233
Q ss_pred HHHHHhCCCCCceEEEeccCCccCCCccHHHHHhCcccccCCCeeEEEeCChhhhcccccHHHHH
Q 012559 194 KLAREVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAAR 258 (461)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 258 (461)
+.+.+...+.|+|+|+||+|+.+.... +..+......+..++.+......++++.+..+...
T Consensus 132 -~l~~l~~~~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~ 193 (423)
T 3qq5_A 132 -VVNLFKEMEIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEI 193 (423)
T ss_dssp -HHHHHHHTTCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHH
T ss_pred -HHHHHHhcCCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 344444447899999999999866533 22221122233455555555555555555444433
No 114
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.30 E-value=2.8e-12 Score=116.49 Aligned_cols=118 Identities=21% Similarity=0.181 Sum_probs=70.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+|+|.+|+|||||+|+|++..+.+.. ..|.... ..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~t~~~~-~~------------------------------------- 46 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTY--IPTIEDT-YR------------------------------------- 46 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTT--SCCCCEE-EE-------------------------------------
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcc--cCccccc-ee-------------------------------------
Confidence 4578999999999999999999987652111 1110000 00
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---H
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---S 190 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~---~ 190 (461)
. .+ ........+.|+||||.... ..+...|+.++|++|+ |.+++..... .
T Consensus 47 ----------~--~~-~~~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~ 99 (199)
T 2gf0_A 47 ----------Q--VI-SCDKSVCTLQITDTTGSHQF-------------PAMQRLSISKGHAFIL-VFSVTSKQSLEELG 99 (199)
T ss_dssp ----------E--EE-EETTEEEEEEEEECCGGGSC-------------HHHHHHHHHHCSEEEE-EEETTCHHHHHTTH
T ss_pred ----------E--EE-EECCEEEEEEEEeCCChHHh-------------HHHHHHhhccCCEEEE-EEECcCHHHHHHHH
Confidence 0 00 01111246889999996553 4567788888996554 4454432111 1
Q ss_pred HHHHHHHHhCC--CCCceEEEeccCCccCC
Q 012559 191 DAIKLAREVDP--TGERTFGVLTKLDLMDK 218 (461)
Q Consensus 191 ~~l~l~~~~d~--~~~rti~VltK~D~~~~ 218 (461)
.+...+.++.. .+.|+++|+||+|+.+.
T Consensus 100 ~~~~~i~~~~~~~~~~piilv~nK~Dl~~~ 129 (199)
T 2gf0_A 100 PIYKLIVQIKGSVEDIPVMLVGNKCDETQR 129 (199)
T ss_dssp HHHHHHHHHHSCGGGSCEEEEEECTTCSSC
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECccCCcc
Confidence 22333333322 35799999999999864
No 115
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.29 E-value=4.4e-12 Score=115.71 Aligned_cols=70 Identities=13% Similarity=0.113 Sum_probs=42.5
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---HHHHHHHHHhCC-CCCceEEEec
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---SDAIKLAREVDP-TGERTFGVLT 211 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~---~~~l~l~~~~d~-~~~rti~Vlt 211 (461)
..+.++||||..... ..+...|++.++++|+ |.+.+...+- ..++..++...+ .+.|+++|.|
T Consensus 72 ~~l~i~Dt~g~~~~~------------~~~~~~~~~~~d~~il-v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 138 (195)
T 3cbq_A 72 VTLVVYDIWEQGDAG------------GWLRDHCLQTGDAFLI-VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGN 138 (195)
T ss_dssp EEEEEECCCCCSGGG------------HHHHHHHHHHCSEEEE-EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEE
T ss_pred EEEEEEecCCCccch------------hhhHHHhhccCCEEEE-EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEee
Confidence 467899999976531 2356678888886554 4454432211 122222233222 4789999999
Q ss_pred cCCccCC
Q 012559 212 KLDLMDK 218 (461)
Q Consensus 212 K~D~~~~ 218 (461)
|+|+.+.
T Consensus 139 K~Dl~~~ 145 (195)
T 3cbq_A 139 KSDLARS 145 (195)
T ss_dssp CTTCTTT
T ss_pred chhcccc
Confidence 9999754
No 116
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.29 E-value=9.9e-12 Score=111.76 Aligned_cols=115 Identities=17% Similarity=0.250 Sum_probs=72.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
..+.|+++|.+|+|||||+++|++..+ .. -.|+
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~-----~~--~~~t---------------------------------------- 47 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDI-----SH--ITPT---------------------------------------- 47 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCC-----EE--EEEE----------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCC-----Cc--ccCc----------------------------------------
Confidence 468999999999999999999999754 10 0111
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
.| +... .+.+ +...+.++||||.... ..+...|+.++|++++ |.+++.........
T Consensus 48 -~g----~~~~--~~~~---~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~-v~d~~~~~s~~~~~ 103 (181)
T 1fzq_A 48 -QG----FNIK--SVQS---QGFKLNVWDIGGQRKI-------------RPYWRSYFENTDILIY-VIDSADRKRFEETG 103 (181)
T ss_dssp -TT----EEEE--EEEE---TTEEEEEEECSSCGGG-------------HHHHHHHHTTCSEEEE-EEETTCGGGHHHHH
T ss_pred -CC----eEEE--EEEE---CCEEEEEEECCCCHHH-------------HHHHHHHhCCCCEEEE-EEECcCHHHHHHHH
Confidence 01 1000 1111 1357899999997553 5667889999996555 45554332222222
Q ss_pred HHHHHh----CCCCCceEEEeccCCccCCC
Q 012559 194 KLAREV----DPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 194 ~l~~~~----d~~~~rti~VltK~D~~~~~ 219 (461)
.....+ ...+.|+++|+||+|+.+..
T Consensus 104 ~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 133 (181)
T 1fzq_A 104 QELTELLEEEKLSCVPVLIFANKQDLLTAA 133 (181)
T ss_dssp HHHHHHTTCGGGTTCCEEEEEECTTSTTCC
T ss_pred HHHHHHHhChhhcCCCEEEEEECcCcccCC
Confidence 233332 23468999999999997643
No 117
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.29 E-value=9.6e-12 Score=114.64 Aligned_cols=118 Identities=15% Similarity=0.194 Sum_probs=71.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
..+.|+|+|.+++|||||+++|++..+.+... .++ ..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~-~~~-~~----------------------------------------- 42 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT-SIT-DS----------------------------------------- 42 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCBCC-CCS-CE-----------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccC-Ccc-ee-----------------------------------------
Confidence 46899999999999999999999887522111 100 00
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHH-HHHHHhcCCCeEEEEEecCCCc-cccHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIEN-MVRSYVEKPSCIILAISPANQD-IATSD 191 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~-~v~~yi~~~~~iIL~V~~a~~d-~~~~~ 191 (461)
...+.+.+.....+.|+||||..+. .. +...|+.+++++|++ .++... -....
T Consensus 43 -----------~~~~~~~~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~~i~v-~d~~~~~~~~~~ 97 (214)
T 2fh5_B 43 -----------SAIYKVNNNRGNSLTLIDLPGHESL-------------RFQLLDRFKSSARAVVFV-VDSAAFQREVKD 97 (214)
T ss_dssp -----------EEEEECSSTTCCEEEEEECCCCHHH-------------HHHHHHHHGGGEEEEEEE-EETTTHHHHHHH
T ss_pred -----------eEEEEecCCCccEEEEEECCCChhH-------------HHHHHHHHHhhCCEEEEE-EECCCcCHHHHH
Confidence 0001122112367899999997542 33 677889999965554 455431 11112
Q ss_pred HHHHHH----H--hCCCCCceEEEeccCCccCCC
Q 012559 192 AIKLAR----E--VDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 192 ~l~l~~----~--~d~~~~rti~VltK~D~~~~~ 219 (461)
...... . ....+.|+++|+||+|+.+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 131 (214)
T 2fh5_B 98 VAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 131 (214)
T ss_dssp HHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred HHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcc
Confidence 222111 1 234468999999999998654
No 118
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.28 E-value=4.7e-12 Score=114.61 Aligned_cols=118 Identities=19% Similarity=0.331 Sum_probs=68.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
..+.|+|+|.+|||||||+|+|++..+.+ ...+..|+
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~---~~~~~~~~---------------------------------------- 83 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRP---TVVSQEPL---------------------------------------- 83 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC----------------------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCc---ccccCCCc----------------------------------------
Confidence 56899999999999999999999987522 11111111
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCC-CccccHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPAN-QDIATSDA 192 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~-~d~~~~~~ 192 (461)
.+ ..+ ....+.++||||..... ... .......+..++++| +|.+++ ..-.....
T Consensus 84 -~~--~~~------------~~~~~~l~Dt~G~~~~~-----~~~----~~~~~~~~~~~~~~i-~v~d~~~~~~~~~~~ 138 (193)
T 2ged_A 84 -SA--ADY------------DGSGVTLVDFPGHVKLR-----YKL----SDYLKTRAKFVKGLI-FMVDSTVDPKKLTTT 138 (193)
T ss_dssp ------CC------------CCTTCSEEEETTCCBSS-----CCH----HHHHHHHGGGEEEEE-EEEETTCCHHHHHHH
T ss_pred -ee--eee------------cCCeEEEEECCCCchHH-----HHH----HHHHHhhcccCCEEE-EEEECCCCchhHHHH
Confidence 00 000 33688999999987642 111 233344455578654 455554 21111111
Q ss_pred HHHHHHh-------CCCCCceEEEeccCCccCCC
Q 012559 193 IKLAREV-------DPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 193 l~l~~~~-------d~~~~rti~VltK~D~~~~~ 219 (461)
......+ .+.+.|+++|+||+|+.+..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 139 AEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred HHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 1112111 34578999999999998654
No 119
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.28 E-value=2.8e-11 Score=121.10 Aligned_cols=124 Identities=19% Similarity=0.223 Sum_probs=71.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCC-CccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~-~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~ 112 (461)
..+.|+++|.+|+|||||+|+|+|..+ ..+. ..+|+.+...
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~-~~~~~~~~t~~~~~~------------------------------------- 207 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKP-EIASYPFTTRGINVG------------------------------------- 207 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCC-EEECCTTCSSCEEEE-------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCeeeceeEE-------------------------------------
Confidence 678999999999999999999999864 2111 1222222100
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCc----cc
Q 012559 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD----IA 188 (461)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d----~~ 188 (461)
.+.. ....+.++||||+....... ..... ...+..+...+|. +|+|.|++.. +.
T Consensus 208 ----------------~~~~-~~~~~~l~Dt~G~~~~~~~~-~~~~~---~~~~~~~~~~ad~-illV~D~s~~~~~~~~ 265 (357)
T 2e87_A 208 ----------------QFED-GYFRYQIIDTPGLLDRPISE-RNEIE---KQAILALRYLGNL-IIYIFDPSEHCGFPLE 265 (357)
T ss_dssp ----------------EEEE-TTEEEEEEECTTTSSSCSTT-SCHHH---HHHHHGGGGTCSE-EEEEECTTCTTSSCHH
T ss_pred ----------------EEEe-cCceEEEEeCCCccccchhh-hhHHH---HHHHHHHHhcCCE-EEEEEeCCccccCCHH
Confidence 0111 12468999999997643211 11111 2333345556775 5555565432 22
Q ss_pred c-HHHHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 189 T-SDAIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 189 ~-~~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
. ..++..+....+ +.++++|+||+|+.+.
T Consensus 266 ~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~ 295 (357)
T 2e87_A 266 EQIHLFEEVHGEFK-DLPFLVVINKIDVADE 295 (357)
T ss_dssp HHHHHHHHHHHHTT-TSCEEEEECCTTTCCH
T ss_pred HHHHHHHHHHHhcC-CCCEEEEEECcccCCh
Confidence 2 122223333333 7899999999999754
No 120
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.27 E-value=2.9e-11 Score=115.67 Aligned_cols=124 Identities=18% Similarity=0.247 Sum_probs=72.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCC-ccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~ 112 (461)
+-.+|+|+|..|+|||||+|+|+|..+...+.. .+|..+...
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~------------------------------------- 77 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMV------------------------------------- 77 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEE-------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEE-------------------------------------
Confidence 457899999999999999999999876332221 122222111
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhc--CCCeEEEEEecCCC-cccc
Q 012559 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE--KPSCIILAISPANQ-DIAT 189 (461)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~--~~~~iIL~V~~a~~-d~~~ 189 (461)
.+.. +...++||||||+.+.. ...+.....+.+++. ++++ +++|.+.+. .+..
T Consensus 78 ----------------~~~~-~~~~l~liDTpG~~~~~------~~~~~~~~~i~~~l~~~~~~~-il~V~~~d~~~~~~ 133 (262)
T 3def_A 78 ----------------SRTM-GGFTINIIDTPGLVEAG------YVNHQALELIKGFLVNRTIDV-LLYVDRLDVYAVDE 133 (262)
T ss_dssp ----------------EEEE-TTEEEEEEECCCSEETT------EECHHHHHHHHHHTTTCEECE-EEEEEESSCSCCCH
T ss_pred ----------------EEEE-CCeeEEEEECCCCCCcc------cchHHHHHHHHHHHhcCCCCE-EEEEEcCCCCCCCH
Confidence 1111 22478999999997753 122233445556664 3454 555544332 2332
Q ss_pred H--HHHHHHHHhCCC--CCceEEEeccCCccCC
Q 012559 190 S--DAIKLAREVDPT--GERTFGVLTKLDLMDK 218 (461)
Q Consensus 190 ~--~~l~l~~~~d~~--~~rti~VltK~D~~~~ 218 (461)
. ..++.++..... ..++++|+||+|+.++
T Consensus 134 ~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 134 LDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp HHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred HHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 2 334444443222 2489999999999744
No 121
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.27 E-value=2.5e-12 Score=117.28 Aligned_cols=117 Identities=16% Similarity=0.116 Sum_probs=67.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
....|+|+|.+++|||||+++|++..+ +.....++.....
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~--------------------------------------- 58 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNGY-PTEYIPTAFDNFS--------------------------------------- 58 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEE---------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeE---------------------------------------
Confidence 567899999999999999999999874 3221111111100
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH--
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD-- 191 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~-- 191 (461)
..+.+ ......+.|+||||..... .+...|+.++|++| +|.+++.......
T Consensus 59 ------------~~~~~-~~~~~~~~i~Dt~G~~~~~-------------~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~ 111 (201)
T 2q3h_A 59 ------------AVVSV-DGRPVRLQLCDTAGQDEFD-------------KLRPLCYTNTDIFL-LCFSVVSPSSFQNVS 111 (201)
T ss_dssp ------------EEEEE-TTEEEEEEEEECCCSTTCS-------------SSGGGGGTTCSEEE-EEEETTCHHHHHHHH
T ss_pred ------------EEEEE-CCEEEEEEEEECCCCHHHH-------------HHhHhhcCCCcEEE-EEEECCCHHHHHHHH
Confidence 00111 1112457899999986642 23456888999655 5555543322222
Q ss_pred --HHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 192 --AIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 192 --~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
++..++...+ +.|+++|+||+|+.+.
T Consensus 112 ~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 112 EKWVPEIRCHCP-KAPIILVGTQSDLRED 139 (201)
T ss_dssp HTHHHHHHHHCS-SSCEEEEEECGGGGGC
T ss_pred HHHHHHHHHhCC-CCCEEEEEECHhhhhc
Confidence 2223344444 6899999999999854
No 122
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.27 E-value=3.6e-12 Score=115.53 Aligned_cols=117 Identities=16% Similarity=0.186 Sum_probs=71.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+|+|.+++|||||+++|++..+ +.....++.....
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~--------------------------------------- 56 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYA--------------------------------------- 56 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSC-CCSCCCSSCCCEE---------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeE---------------------------------------
Confidence 346899999999999999999998865 2221111111100
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccH---
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--- 190 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~--- 190 (461)
..+.+ ......+.|+||||..+. ..+...|+.++|++|+ |.+++....-.
T Consensus 57 ------------~~~~~-~~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~ 109 (194)
T 2atx_A 57 ------------VSVTV-GGKQYLLGLYDTAGQEDY-------------DRLRPLSYPMTDVFLI-CFSVVNPASFQNVK 109 (194)
T ss_dssp ------------EEEES-SSCEEEEEEECCCCSSSS-------------TTTGGGGCTTCSEEEE-EEETTCHHHHHHHH
T ss_pred ------------EEEEE-CCEEEEEEEEECCCCcch-------------hHHHHHhcCCCCEEEE-EEECCCHHHHHHHH
Confidence 00111 111246889999997664 2345678899996554 55554332211
Q ss_pred -HHHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 191 -DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 191 -~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
.++..++...+ +.|+++|+||+|+.+.
T Consensus 110 ~~~~~~~~~~~~-~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 110 EEWVPELKEYAP-NVPFLLIGTQIDLRDD 137 (194)
T ss_dssp HTHHHHHHHHST-TCCEEEEEECTTSTTC
T ss_pred HHHHHHHHHhCC-CCCEEEEEEChhhccc
Confidence 22333444433 6899999999999864
No 123
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.26 E-value=1.9e-12 Score=117.45 Aligned_cols=117 Identities=16% Similarity=0.137 Sum_probs=71.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+|+|.+|+|||||+|+|++..+ +.....++....
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~---------------------------------------- 60 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEI-PTAYVPTVFENF---------------------------------------- 60 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEE----------------------------------------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCC-CCccCCeeeeee----------------------------------------
Confidence 457899999999999999999999875 222111111000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH--
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD-- 191 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~-- 191 (461)
. ..+ ........+.|+||||.... ..+...|+.++|++| +|.+++.......
T Consensus 61 --------~---~~~-~~~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~ 114 (194)
T 3reg_A 61 --------S---HVM-KYKNEEFILHLWDTAGQEEY-------------DRLRPLSYADSDVVL-LCFAVNNRTSFDNIS 114 (194)
T ss_dssp --------E---EEE-EETTEEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEE-EEEETTCHHHHHHHH
T ss_pred --------E---EEE-EECCEEEEEEEEECCCcHHH-------------HHHhHhhccCCcEEE-EEEECCCHHHHHHHH
Confidence 0 000 01112245789999996543 345667889999655 4555543322222
Q ss_pred --HHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 192 --AIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 192 --~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
+...++... .+.|+++|+||+|+.+.
T Consensus 115 ~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 142 (194)
T 3reg_A 115 TKWEPEIKHYI-DTAKTVLVGLKVDLRKD 142 (194)
T ss_dssp HTHHHHHHHHC-TTSEEEEEEECGGGCCT
T ss_pred HHHHHHHHHhC-CCCCEEEEEEChhhccC
Confidence 233334333 35899999999999853
No 124
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.26 E-value=4.4e-12 Score=117.95 Aligned_cols=146 Identities=18% Similarity=0.254 Sum_probs=83.0
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhcC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 116 (461)
.|+|||++++|||||++.+++..| +... .|+ .|
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~~f-~~~~-----~~T-----------------------------------------ig 47 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYDSF-DNTY-----QAT-----------------------------------------IG 47 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC-C------------------------------------------------------
T ss_pred EEEEECcCCcCHHHHHHHHHhCCC-CCCc-----CCc-----------------------------------------cc
Confidence 699999999999999999998776 2111 111 00
Q ss_pred CCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCc-c-ccHHHHH
Q 012559 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-I-ATSDAIK 194 (461)
Q Consensus 117 ~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d-~-~~~~~l~ 194 (461)
..|.. ..+ ........|.||||+|..+. ..+...|++++++++++..-.+.. + ....++.
T Consensus 48 --~d~~~--k~~-~~~~~~v~l~iwDtaGqe~~-------------~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~ 109 (216)
T 4dkx_A 48 --IDFLS--KTM-YLEDRTIRLQLWDTAGLERF-------------RSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWID 109 (216)
T ss_dssp ----CEE--EEE-ECSSCEEEEEEECCSCTTTC-------------GGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHH
T ss_pred --eEEEE--EEE-EecceEEEEEEEECCCchhh-------------hhHHHHHhccccEEEEEeecchhHHHHHHHHHHH
Confidence 00000 001 11122356789999997765 567788999999765554433321 1 1123334
Q ss_pred HHHHhCCCCCceEEEeccCCccCCCc----cHHHHHhCcccccCCCeeEEEeCChhhhccc
Q 012559 195 LAREVDPTGERTFGVLTKLDLMDKGT----NALEVLEGRSYRLQHPWVGIVNRSQADINKN 251 (461)
Q Consensus 195 l~~~~d~~~~rti~VltK~D~~~~~~----~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~ 251 (461)
.++...+...++|+|.||+|+.+... +..++. ...+..|+.+...++.++++.
T Consensus 110 ~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a----~~~~~~~~e~SAktg~nV~e~ 166 (216)
T 4dkx_A 110 DVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKA----KELNVMFIETSAKAGYNVKQL 166 (216)
T ss_dssp HHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHH----HHHTCEEEEEBTTTTBSHHHH
T ss_pred HHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHH----HHhCCeeEEEeCCCCcCHHHH
Confidence 44444455689999999999976432 122222 223345666555554444433
No 125
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.26 E-value=2.3e-12 Score=115.53 Aligned_cols=117 Identities=20% Similarity=0.137 Sum_probs=71.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
+..+|+|+|.+|+|||||+++|++..+. .....++....
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~---------------------------------------- 42 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNY---------------------------------------- 42 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCC-SSCCCCSCCEE----------------------------------------
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCC-CCcCCccccee----------------------------------------
Confidence 3468999999999999999999987652 21111111000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH--
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD-- 191 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~-- 191 (461)
...+.+ ......+.++||||.... ..+...|+.++|++|+ |.+++...+...
T Consensus 43 -----------~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~ 96 (186)
T 1mh1_A 43 -----------SANVMV-DGKPVNLGLWDTAGQEDY-------------DRLRPLSYPQTDVSLI-CFSLVSPASFENVR 96 (186)
T ss_dssp -----------EEEEEE-TTEEEEEEEECCCCSGGG-------------TTTGGGGCTTCSEEEE-EEETTCHHHHHHHH
T ss_pred -----------EEEEEE-CCEEEEEEEEECCCCHhH-------------HHHHHHhccCCcEEEE-EEECCChhhHHHHH
Confidence 000111 112246789999998654 2345568889996554 555543322222
Q ss_pred --HHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 192 --AIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 192 --~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
++..++...+ +.|+++|+||+|+.+.
T Consensus 97 ~~~~~~~~~~~~-~~piilv~nK~Dl~~~ 124 (186)
T 1mh1_A 97 AKWYPEVRHHCP-NTPIILVGTKLDLRDD 124 (186)
T ss_dssp HTHHHHHHHHST-TSCEEEEEECHHHHTC
T ss_pred HHHHHHHHHhCC-CCCEEEEeEccccccc
Confidence 2334444444 7899999999999864
No 126
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.26 E-value=7.1e-12 Score=114.54 Aligned_cols=113 Identities=13% Similarity=0.183 Sum_probs=66.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
+...|+++|.+|+|||||+++|++..+ +. ..|+
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~------~~~t---------------------------------------- 56 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRL-GQ------HVPT---------------------------------------- 56 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------------CC----------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC-Cc------cCCC----------------------------------------
Confidence 457899999999999999999998765 11 0011
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
.+ .. .-.+.+. ...+.++||||.... +.+...|+++++++|+ |.++.....-....
T Consensus 57 -~~----~~--~~~~~~~---~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~-v~D~~~~~s~~~~~ 112 (198)
T 1f6b_A 57 -LH----PT--SEELTIA---GMTFTTFDLGGHIQA-------------RRVWKNYLPAINGIVF-LVDCADHERLLESK 112 (198)
T ss_dssp -CC----CS--CEEEEET---TEEEEEEEECC-----------------CCGGGGGGGGCSEEEE-EEETTCGGGHHHHH
T ss_pred -CC----ce--eEEEEEC---CEEEEEEECCCcHhh-------------HHHHHHHHhcCCEEEE-EEECCCHHHHHHHH
Confidence 01 00 0112221 257899999997553 2345678899996555 45554332222222
Q ss_pred HHHHHh----CCCCCceEEEeccCCccC
Q 012559 194 KLAREV----DPTGERTFGVLTKLDLMD 217 (461)
Q Consensus 194 ~l~~~~----d~~~~rti~VltK~D~~~ 217 (461)
....++ ...+.|.++|+||+|+..
T Consensus 113 ~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 113 EELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp HHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred HHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 222222 235789999999999975
No 127
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.26 E-value=2.2e-13 Score=124.46 Aligned_cols=119 Identities=14% Similarity=0.187 Sum_probs=67.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+|+|.+|+|||||+|+|++..+........|..
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~------------------------------------------ 69 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVD------------------------------------------ 69 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCS------------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccce------------------------------------------
Confidence 45789999999999999999999987621110000000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
+ ....+.+ ......+.|+||||.... ..+...|+.++|. +++|.+++.........
T Consensus 70 -------~--~~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~ 125 (199)
T 3l0i_B 70 -------F--KIRTIEL-DGKTIKLQIWDTAGQERF-------------RTITSSYYRGAHG-IIVVYDVTDQESFNNVK 125 (199)
T ss_dssp -------E--EEEEEEE-TTEEEEEEEECCTTCTTC-------------CCCSCC--CCCSE-EEECC-CCCSHHHHHHH
T ss_pred -------E--EEEEEEE-CCEEEEEEEEECCCcHhH-------------HHHHHHHhhcCCE-EEEEEECCCHHHHHHHH
Confidence 0 0001111 111246899999996654 2234568888996 45555655433322322
Q ss_pred HH---HHHhCCCCCceEEEeccCCccCC
Q 012559 194 KL---AREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 194 ~l---~~~~d~~~~rti~VltK~D~~~~ 218 (461)
.+ +....+.+.++++|+||+|+.+.
T Consensus 126 ~~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 153 (199)
T 3l0i_B 126 QWLQEIDRYASENVNKLLVGNKCDLTTK 153 (199)
T ss_dssp HHHHHHHSCC-CCSEEEEC-CCSSCC--
T ss_pred HHHHHHHHhccCCCCEEEEEECccCCcc
Confidence 23 34444457899999999999754
No 128
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.26 E-value=7.5e-13 Score=122.95 Aligned_cols=69 Identities=14% Similarity=0.183 Sum_probs=43.7
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccH---HHHHHHHHhCCCCCceEEEecc
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---DAIKLAREVDPTGERTFGVLTK 212 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~---~~l~l~~~~d~~~~rti~VltK 212 (461)
..+.|+||||.... ..+...|+.+++++| +|.+++...+.. .++..+....+ +.++++|+||
T Consensus 64 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK 128 (221)
T 3gj0_A 64 IKFNVWDTAGQEKF-------------GGLRDGYYIQAQCAI-IMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNK 128 (221)
T ss_dssp EEEEEEEECSGGGT-------------SCCCHHHHTTCCEEE-EEEETTCHHHHHTHHHHHHHHHHHST-TCCEEEEEEC
T ss_pred EEEEEEeCCChHHH-------------hHHHHHHHhcCCEEE-EEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEC
Confidence 46889999996543 234567888999655 555554332222 23333333332 6899999999
Q ss_pred CCccCCC
Q 012559 213 LDLMDKG 219 (461)
Q Consensus 213 ~D~~~~~ 219 (461)
+|+.+..
T Consensus 129 ~Dl~~~~ 135 (221)
T 3gj0_A 129 VDIKDRK 135 (221)
T ss_dssp TTSSSCS
T ss_pred Ccccccc
Confidence 9997543
No 129
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.25 E-value=1.2e-11 Score=112.26 Aligned_cols=113 Identities=16% Similarity=0.171 Sum_probs=70.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
+..+|+++|.+|+|||||+++|++..+-.. ..|..+.
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~---~~t~~~~---------------------------------------- 58 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATL---QPTWHPT---------------------------------------- 58 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCCC---CCCCSCE----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcc---ccCCCCC----------------------------------------
Confidence 457999999999999999999998765110 1111111
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
.-.+.+. ...+.++||||.... +.+...|++++|++| +|.+++...+-....
T Consensus 59 -----------~~~~~~~---~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~ 110 (190)
T 1m2o_B 59 -----------SEELAIG---NIKFTTFDLGGHIQA-------------RRLWKDYFPEVNGIV-FLVDAADPERFDEAR 110 (190)
T ss_dssp -----------EEEEEET---TEEEEEEECCCSGGG-------------TTSGGGGCTTCCEEE-EEEETTCGGGHHHHH
T ss_pred -----------eEEEEEC---CEEEEEEECCCCHHH-------------HHHHHHHHhcCCEEE-EEEECCChHHHHHHH
Confidence 0011111 257899999998654 234567888999655 455555433223332
Q ss_pred HHHHHh----CCCCCceEEEeccCCccC
Q 012559 194 KLAREV----DPTGERTFGVLTKLDLMD 217 (461)
Q Consensus 194 ~l~~~~----d~~~~rti~VltK~D~~~ 217 (461)
.....+ ...+.|.++|+||+|+.+
T Consensus 111 ~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 111 VELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp HHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred HHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 233222 235789999999999975
No 130
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.25 E-value=3.5e-12 Score=116.63 Aligned_cols=116 Identities=16% Similarity=0.142 Sum_probs=70.0
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
-.+|+|+|.+|+|||||++++++..+ +.....++..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~------------------------------------------- 60 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFE------------------------------------------- 60 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC-CSSCCCSSCC-------------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcC-CcccCCcccc-------------------------------------------
Confidence 35799999999999999999999875 2211111000
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccH----
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---- 190 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~---- 190 (461)
.+. ..+.+ ......+.|+||||.... ..+...|+.++|++| +|.+++....-.
T Consensus 61 -----~~~---~~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~ 117 (201)
T 2gco_A 61 -----NYI---ADIEV-DGKQVELALWDTAGQEDY-------------DRLRPLSYPDTDVIL-MCFSIDSPDSLENIPE 117 (201)
T ss_dssp -----CCE---EEEEE-TTEEEEEEEECCCCSGGG-------------TTTGGGGCTTCSEEE-EEEETTCHHHHHHHHH
T ss_pred -----eEE---EEEEE-CCEEEEEEEEECCCchhH-------------HHHHHHhcCCCCEEE-EEEECCCHHHHHHHHH
Confidence 000 00111 111246889999996543 234556888999655 454554322221
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 191 DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
.+...++...+ +.|+++|+||+|+.+.
T Consensus 118 ~~~~~~~~~~~-~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 118 KWTPEVKHFCP-NVPIILVGNKKDLRQD 144 (201)
T ss_dssp THHHHHHHHST-TCCEEEEEECGGGTTC
T ss_pred HHHHHHHHhCC-CCCEEEEEecHHhhcC
Confidence 22334444433 6899999999999864
No 131
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.25 E-value=2.1e-12 Score=118.73 Aligned_cols=116 Identities=16% Similarity=0.177 Sum_probs=68.8
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
-.+|+|+|.+|+|||||+|+|++..+ +.....++...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~------------------------------------------ 61 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEF-PEVYVPTVFEN------------------------------------------ 61 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSC-C-------CCE------------------------------------------
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCC-CCcCCCcccce------------------------------------------
Confidence 35899999999999999999999875 21111100000
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccH----
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS---- 190 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~---- 190 (461)
+. ..+.+ ......+.|+||||.... ..+...|+.++|++|+ |.+++....-.
T Consensus 62 ------~~---~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~~ 117 (207)
T 2fv8_A 62 ------YV---ADIEV-DGKQVELALWDTAGQEDY-------------DRLRPLSYPDTDVILM-CFSVDSPDSLENIPE 117 (207)
T ss_dssp ------EE---EEEEE-TTEEEEEEEEECTTCTTC-------------TTTGGGGCTTCCEEEE-EEETTCHHHHHHHHH
T ss_pred ------EE---EEEEE-CCEEEEEEEEECCCcHHH-------------HHHHHhhcCCCCEEEE-EEECCCHHHHHHHHH
Confidence 00 00111 111246889999997654 2345568889996554 44444322111
Q ss_pred HHHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 191 DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 191 ~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
.++..++...+ +.|+++|+||+|+.+.
T Consensus 118 ~~~~~~~~~~~-~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 118 KWVPEVKHFCP-NVPIILVANKKDLRSD 144 (207)
T ss_dssp THHHHHHHHST-TCCEEEEEECGGGGGC
T ss_pred HHHHHHHHhCC-CCCEEEEEEchhhhcc
Confidence 22333444333 6899999999999864
No 132
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.25 E-value=4.7e-12 Score=117.15 Aligned_cols=118 Identities=17% Similarity=0.164 Sum_probs=58.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+|+|.+|+|||||+++|++..+ +.....++....
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~---------------------------------------- 71 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAF-PESYTPTVFERY---------------------------------------- 71 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC--------CCCCCEEE----------------------------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCccceeE----------------------------------------
Confidence 346899999999999999999999865 222111110000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH--
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD-- 191 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~-- 191 (461)
...+.+ ......+.|+||||.... ..+...|+.+++++|+ |.+++...+-..
T Consensus 72 -----------~~~~~~-~~~~~~l~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~ 125 (214)
T 2j1l_A 72 -----------MVNLQV-KGKPVHLHIWDTAGQDDY-------------DRLRPLFYPDASVLLL-CFDVTSPNSFDNIF 125 (214)
T ss_dssp -----------EEEEEE-TTEEEEEEEEEC----------------------------CEEEEEE-EEETTCHHHHHHHH
T ss_pred -----------EEEEEE-CCEEEEEEEEECCCchhh-------------hHHHHHHhccCCEEEE-EEECcCHHHHHHHH
Confidence 000111 111246889999996543 4556678889986554 555543322222
Q ss_pred --HHHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 192 --AIKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 192 --~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
++..++... .+.|+++|+||+|+.+..
T Consensus 126 ~~~~~~~~~~~-~~~piilv~nK~Dl~~~~ 154 (214)
T 2j1l_A 126 NRWYPEVNHFC-KKVPIIVVGCKTDLRKDK 154 (214)
T ss_dssp HTHHHHHHHHC-SSCCEEEEEECGGGGSCH
T ss_pred HHHHHHHHHhC-CCCCEEEEEEChhhhccc
Confidence 223333333 368999999999998643
No 133
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.24 E-value=6.7e-12 Score=125.71 Aligned_cols=122 Identities=20% Similarity=0.241 Sum_probs=77.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
..++|++||.||+|||||+|+|+|.+....+...||+-|..
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~--------------------------------------- 111 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVP--------------------------------------- 111 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEE---------------------------------------
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeee---------------------------------------
Confidence 45799999999999999999999987544444457777652
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
| +......+++|+||||++..+..+ .. ....+.+.++++| +|+.|++++.++...+.+
T Consensus 112 --g-------------~~~~~~~~i~l~D~pGl~~~a~~~--~~----~g~~~l~~i~~ad-~il~vvD~~~p~~~~~~i 169 (376)
T 4a9a_A 112 --G-------------VIRYKGAKIQMLDLPGIIDGAKDG--RG----RGKQVIAVARTCN-LLFIILDVNKPLHHKQII 169 (376)
T ss_dssp --E-------------EEEETTEEEEEEECGGGCCC-------C----HHHHHHHHHHHCS-EEEEEEETTSHHHHHHHH
T ss_pred --E-------------EEEeCCcEEEEEeCCCccCCchhh--hH----HHHHHHHHHHhcC-ccccccccCccHHHHHHH
Confidence 1 111122568999999998754321 11 2334556777888 577777877554333322
Q ss_pred -HHHHHhC--CCCCceEEEeccCCcc
Q 012559 194 -KLAREVD--PTGERTFGVLTKLDLM 216 (461)
Q Consensus 194 -~l~~~~d--~~~~rti~VltK~D~~ 216 (461)
.-+..++ -...|.++|+||.|.-
T Consensus 170 ~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 170 EKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred HHHHHHhhHhhccCChhhhhhHhhhh
Confidence 1122222 1356789999999963
No 134
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.24 E-value=1.9e-12 Score=115.69 Aligned_cols=117 Identities=23% Similarity=0.229 Sum_probs=67.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+|+|.+++|||||++++++..+ +... .|+
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~-~~~~-----~~t---------------------------------------- 40 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTF-PTDY-----VPT---------------------------------------- 40 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCC-C---------------------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CCCC-----CCe----------------------------------------
Confidence 457899999999999999999998765 2111 111
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH--
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD-- 191 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~-- 191 (461)
.+ ..+... +.+ ......+.|+||||.... ..+...|+.++|+++ +|.+++...+...
T Consensus 41 -~~--~~~~~~---~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~ 99 (182)
T 3bwd_D 41 -VF--DNFSAN---VVV-NGATVNLGLWDTAGQEDY-------------NRLRPLSYRGADVFI-LAFSLISKASYENVS 99 (182)
T ss_dssp -------CBCC---CC--------CEEECCCC-CTT-------------TTTGGGGGTTCSEEE-EEEETTCHHHHHHHH
T ss_pred -ee--eeEEEE---EEE-CCEEEEEEEEECCCChhh-------------hhhHHhhccCCCEEE-EEEECCCHHHHHHHH
Confidence 00 000000 001 112356889999997653 344567888999655 4555543222222
Q ss_pred --HHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 192 --AIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 192 --~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
++..++...+ +.|+++|+||+|+.+.
T Consensus 100 ~~~~~~~~~~~~-~~piilv~nK~Dl~~~ 127 (182)
T 3bwd_D 100 KKWIPELKHYAP-GVPIVLVGTKLDLRDD 127 (182)
T ss_dssp HTHHHHHHHHCT-TCCEEEEEECHHHHTC
T ss_pred HHHHHHHHHhCC-CCCEEEEEechhhhcC
Confidence 3334444444 6899999999999754
No 135
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.23 E-value=4.8e-11 Score=110.20 Aligned_cols=114 Identities=21% Similarity=0.357 Sum_probs=70.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
..+.|+|+|.+|+|||||+++|++..+.+. ..+..|+.
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~---~~~~~~~~--------------------------------------- 48 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLS--------------------------------------- 48 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCB---CCCSSCEE---------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCe---eeecCceE---------------------------------------
Confidence 679999999999999999999999875221 11222220
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcC----CCeEEEEEecCC-Cccc
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEK----PSCIILAISPAN-QDIA 188 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~----~~~iIL~V~~a~-~d~~ 188 (461)
+ ..+ ....+.++||||.... ..+...|+.. ++++| +|.++. ..-.
T Consensus 49 --~--~~~------------~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~~~~~~~~i-~v~D~~~~~~~ 98 (218)
T 1nrj_B 49 --A--ADY------------DGSGVTLVDFPGHVKL-------------RYKLSDYLKTRAKFVKGLI-FMVDSTVDPKK 98 (218)
T ss_dssp --E--TTG------------GGSSCEEEECCCCGGG-------------THHHHHHHHHHGGGEEEEE-EEEETTSCTTC
T ss_pred --E--EEe------------eCceEEEEECCCcHHH-------------HHHHHHHHHhccccCCEEE-EEEECCCChHH
Confidence 0 000 2367899999998654 2344555554 78654 455554 2112
Q ss_pred cHHHHHHHHHh-------CCCCCceEEEeccCCccCCC
Q 012559 189 TSDAIKLAREV-------DPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 189 ~~~~l~l~~~~-------d~~~~rti~VltK~D~~~~~ 219 (461)
-........++ .+.+.|+++|+||+|+....
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 136 (218)
T 1nrj_B 99 LTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 136 (218)
T ss_dssp CHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred HHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccC
Confidence 12222222221 34678999999999998654
No 136
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.23 E-value=2.6e-12 Score=118.33 Aligned_cols=117 Identities=20% Similarity=0.203 Sum_probs=70.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
....|+|+|.+++|||||++++++..+ +.....++....
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~---------------------------------------- 46 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNF---------------------------------------- 46 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCSSCCCE----------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceeE----------------------------------------
Confidence 457899999999999999999998765 322111111110
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccH---
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--- 190 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~--- 190 (461)
...+.+ ......+.|+||||.... ..+...|+.++|.+|+ |.+++......
T Consensus 47 -----------~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~il-v~d~~~~~s~~~~~ 100 (212)
T 2j0v_A 47 -----------SANVAV-DGQIVNLGLWDTAGQEDY-------------SRLRPLSYRGADIFVL-AFSLISKASYENVL 100 (212)
T ss_dssp -----------EEEEEC-SSCEEEEEEECCCCCCCC-------------CC--CGGGTTCSEEEE-EEETTCHHHHHHHH
T ss_pred -----------EEEEEE-CCEEEEEEEEECCCcHHH-------------HHHHHhhccCCCEEEE-EEECCCHHHHHHHH
Confidence 000111 112246889999998664 2345568899996555 44554322222
Q ss_pred -HHHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 191 -DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 191 -~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
.++..++...+ +.|+++|+||+|+.+.
T Consensus 101 ~~~~~~~~~~~~-~~piilv~nK~Dl~~~ 128 (212)
T 2j0v_A 101 KKWMPELRRFAP-NVPIVLVGTKLDLRDD 128 (212)
T ss_dssp HTHHHHHHHHCT-TCCEEEEEECHHHHTC
T ss_pred HHHHHHHHHhCC-CCCEEEEEeCHHhhhC
Confidence 23334444444 6899999999999754
No 137
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.84 E-value=1.4e-12 Score=119.47 Aligned_cols=118 Identities=21% Similarity=0.185 Sum_probs=70.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
+..+|+|+|.+|+|||||+++|++..+ +.....++....
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~---------------------------------------- 67 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNY---------------------------------------- 67 (204)
Confidence 457899999999999999999998765 211111000000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
.. .+.+ ......+.|+||||..+. ..+...|+.++|++|+ |.+++.........
T Consensus 68 -~~----------~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~iil-v~D~~~~~s~~~~~ 121 (204)
T 3th5_A 68 -SA----------NVMV-DGKPVNLGLWDTAGQEDY-------------DRLRPLSYPQTDVFLI-CFSLVSPASFENVR 121 (204)
Confidence 00 0001 112246779999997553 4566678889996554 45544322222221
Q ss_pred -HHHHHhCCC--CCceEEEeccCCccCC
Q 012559 194 -KLAREVDPT--GERTFGVLTKLDLMDK 218 (461)
Q Consensus 194 -~l~~~~d~~--~~rti~VltK~D~~~~ 218 (461)
.+...+... +.|+++|+||+|+.+.
T Consensus 122 ~~~~~~l~~~~~~~piilv~NK~Dl~~~ 149 (204)
T 3th5_A 122 AKWYPEVRHHCPNTPIILVGTKLDLRDD 149 (204)
Confidence 233333322 6899999999999754
No 138
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.20 E-value=1e-12 Score=133.24 Aligned_cols=38 Identities=24% Similarity=0.215 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEE
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLV 74 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~ 74 (461)
+|++||.+|+|||||+|+|+|..........||+.|+.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~ 39 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANV 39 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCce
Confidence 68999999999999999999987322222346666653
No 139
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.20 E-value=4.6e-11 Score=106.44 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=24.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDF 60 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~ 60 (461)
..-.|+|+|++|+|||||++++++..|
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~ 32 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSY 32 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 346899999999999999999999876
No 140
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.19 E-value=7.6e-12 Score=115.84 Aligned_cols=117 Identities=16% Similarity=0.136 Sum_probs=71.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+|+|.+++|||||+++|++..+. .....++....
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~-~~~~~t~~~~~---------------------------------------- 64 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENY---------------------------------------- 64 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC-SSCCCCSEEEE----------------------------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCC-CCcCCeeeeeE----------------------------------------
Confidence 5578999999999999999999998762 11111110000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc----
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---- 189 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~---- 189 (461)
...+.+ ......+.|+||||.... ..+...|+.++|++|++ .+++...+.
T Consensus 65 -----------~~~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v-~d~~~~~s~~~~~ 118 (214)
T 3q3j_B 65 -----------TACLET-EEQRVELSLWDTSGSPYY-------------DNVRPLCYSDSDAVLLC-FDISRPETVDSAL 118 (214)
T ss_dssp -----------EEEEEC---CEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEE-EETTCTHHHHHHH
T ss_pred -----------EEEEEE-CCEEEEEEEEECCCCHhH-------------HHHHHHHcCCCeEEEEE-EECcCHHHHHHHH
Confidence 000011 112246889999997654 34566788999965555 455433222
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 190 SDAIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 190 ~~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
..++..++...+ +.++++|.||+|+.+.
T Consensus 119 ~~~~~~i~~~~~-~~piilv~nK~Dl~~~ 146 (214)
T 3q3j_B 119 KKWRTEILDYCP-STRVLLIGCKTDLRTD 146 (214)
T ss_dssp THHHHHHHHHCT-TSEEEEEEECGGGGGC
T ss_pred HHHHHHHHHhCC-CCCEEEEEEChhhccc
Confidence 233444455443 6899999999999753
No 141
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.19 E-value=4.5e-12 Score=116.33 Aligned_cols=118 Identities=19% Similarity=0.133 Sum_probs=70.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
+-.+|+|+|.+|+|||||++++++..+... ...++.....
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~-~~~t~~~~~~--------------------------------------- 68 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGE-YIPTVFDNYS--------------------------------------- 68 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCCCC--CCCCSEEEEE---------------------------------------
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCCCCC-cCCeecceeE---------------------------------------
Confidence 457899999999999999999998765211 1111110000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH--
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD-- 191 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~-- 191 (461)
..+.+ ......+.|+||||.... ..+...|+.++|++|+ |.+++.......
T Consensus 69 ------------~~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~ 121 (204)
T 4gzl_A 69 ------------ANVMV-DGKPVNLGLWDTAGLEDY-------------DRLRPLSYPQTDVFLI-CFSLVSPASFENVR 121 (204)
T ss_dssp ------------EEEEC-C-CEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEE-EEETTCHHHHHHHH
T ss_pred ------------EEEEE-CCEEEEEEEEECCCchhh-------------HHHHHHHhccCCEEEE-EEECCCHHHHHHHH
Confidence 00000 111245679999998553 3455678899996554 555543322222
Q ss_pred --HHHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 192 --AIKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 192 --~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
+...++... .+.++++|+||+|+.+..
T Consensus 122 ~~~~~~~~~~~-~~~piilv~nK~Dl~~~~ 150 (204)
T 4gzl_A 122 AKWYPEVRHHC-PNTPIILVGTKLDLRDDK 150 (204)
T ss_dssp HTHHHHHHHHC-SSCCEEEEEECHHHHTCH
T ss_pred HHHHHHHHHhC-CCCCEEEEEechhhccch
Confidence 223334433 368999999999998654
No 142
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.19 E-value=5.1e-11 Score=122.56 Aligned_cols=129 Identities=22% Similarity=0.313 Sum_probs=72.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCC-CccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~-~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~ 112 (461)
..++|++||.+|||||||+|+|+|..+..++. ..+|+-|.
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~--------------------------------------- 219 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPV--------------------------------------- 219 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------C---------------------------------------
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCce---------------------------------------
Confidence 56899999999999999999999986521111 11222221
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHH
Q 012559 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA 192 (461)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~ 192 (461)
.| .+.+. ..++.++||||+.+..... ++..+......+..++..++. +++|.++......++
T Consensus 220 --~~----------~i~~~---g~~~~l~Dt~G~~~~~~~~-~~~~e~~~~~~~~~~i~~ad~-vllv~d~~~~~~~~~- 281 (439)
T 1mky_A 220 --DD----------EVFID---GRKYVFVDTAGLRRKSRVE-PRTVEKYSNYRVVDSIEKADV-VVIVLDATQGITRQD- 281 (439)
T ss_dssp --CE----------EEEET---TEEEEESSCSCC------------CCSCCHHHHHHHHHCSE-EEEEEETTTCCCHHH-
T ss_pred --EE----------EEEEC---CEEEEEEECCCCccccccc-hhhHHHHHHHHHHHHHhhCCE-EEEEEeCCCCCCHHH-
Confidence 11 11121 2367899999986532110 000000001123567788885 555566655544443
Q ss_pred HHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 193 IKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 193 l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
..++..+...+.++++|+||+|+.+..
T Consensus 282 ~~i~~~l~~~~~~~ilv~NK~Dl~~~~ 308 (439)
T 1mky_A 282 QRMAGLMERRGRASVVVFNKWDLVVHR 308 (439)
T ss_dssp HHHHHHHHHTTCEEEEEEECGGGSTTG
T ss_pred HHHHHHHHHcCCCEEEEEECccCCCch
Confidence 335555555689999999999998643
No 143
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.19 E-value=3.7e-11 Score=108.40 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=24.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHhhCCCC
Q 012559 33 EALPSVAVVGGQSSGKSSVLESVVGRDF 60 (461)
Q Consensus 33 ~~lP~IvVvG~~ssGKSSllnal~G~~~ 60 (461)
...-+|+|+|.+|+|||||++++++..|
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~ 45 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTY 45 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3556899999999999999999998876
No 144
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.19 E-value=2.7e-11 Score=127.81 Aligned_cols=110 Identities=8% Similarity=0.077 Sum_probs=61.3
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCC
Q 012559 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (461)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 214 (461)
...+.++||||.... ..+...|+++++. +++|.|++..-....++..++...+ +.|+|+|+||+|
T Consensus 97 ~~~~~i~Dt~G~e~~-------------~~~~~~~l~~~d~-ii~V~D~s~~~~~~~~~~~l~~~~~-~~pvilV~NK~D 161 (535)
T 3dpu_A 97 ECLFHFWDFGGQEIM-------------HASHQFFMTRSSV-YMLLLDSRTDSNKHYWLRHIEKYGG-KSPVIVVMNKID 161 (535)
T ss_dssp TCEEEEECCCSCCTT-------------TTTCHHHHHSSEE-EEEEECGGGGGGHHHHHHHHHHHSS-SCCEEEEECCTT
T ss_pred eEEEEEEECCcHHHH-------------HHHHHHHccCCcE-EEEEEeCCCchhHHHHHHHHHHhCC-CCCEEEEEECCC
Confidence 357899999995543 2234567778885 5566666654344445555555554 589999999999
Q ss_pred ccCCCccHHHHHhCcccccCCCeeEEEeCChhhhcccccHHHHHH
Q 012559 215 LMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARR 259 (461)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 259 (461)
+.+......+.++......+..++.+.+.+..++++....+....
T Consensus 162 l~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~ 206 (535)
T 3dpu_A 162 ENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAV 206 (535)
T ss_dssp TCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHH
Confidence 986443212222211222334466666666556555555444433
No 145
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.17 E-value=4.3e-11 Score=117.31 Aligned_cols=74 Identities=16% Similarity=0.222 Sum_probs=45.9
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHH---HHHHHHhC--CCCCceEEE
Q 012559 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDA---IKLAREVD--PTGERTFGV 209 (461)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~---l~l~~~~d--~~~~rti~V 209 (461)
...+.+|||||..+. .......+...|++++|++| +|.|++........ ...+.++. ..+.|+++|
T Consensus 51 ~~~l~i~Dt~G~~~~--------~~~~~~~~~~~~~~~ad~vi-~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv 121 (307)
T 3r7w_A 51 NMTLNLWDCGGQDVF--------MENYFTKQKDHIFQMVQVLI-HVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVL 121 (307)
T ss_dssp TEEEEEEEECCSHHH--------HHHHHTTTHHHHHTTCSEEE-EEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred ceEEEEEECCCcHHH--------hhhhhhhHHHHHhccCCEEE-EEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 467899999996542 12222456788899999654 55555443222222 22233321 236899999
Q ss_pred eccCCccC
Q 012559 210 LTKLDLMD 217 (461)
Q Consensus 210 ltK~D~~~ 217 (461)
+||+|+.+
T Consensus 122 ~NK~Dl~~ 129 (307)
T 3r7w_A 122 LHKMDLVQ 129 (307)
T ss_dssp EECGGGSC
T ss_pred Eecccccc
Confidence 99999986
No 146
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.17 E-value=7.3e-12 Score=131.08 Aligned_cols=117 Identities=15% Similarity=0.236 Sum_probs=77.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
+.|.|+|+|++++|||||+++|++..+.....+..|....
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~---------------------------------------- 42 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIG---------------------------------------- 42 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTT----------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEe----------------------------------------
Confidence 5799999999999999999999987652222222221110
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
.. .+..++...++||||||.... ..+...++..+|. +++|++++.....+. .
T Consensus 43 ---------~~----~v~~~~g~~i~~iDTPGhe~f-------------~~~~~~~~~~aD~-vILVVDa~dg~~~qt-~ 94 (537)
T 3izy_P 43 ---------AF----LVSLPSGEKITFLDTPGHAAF-------------SAMRARGTQVTDI-VILVVAADDGVMKQT-V 94 (537)
T ss_dssp ---------SC----CBCSSCSSCCBCEECSSSCCT-------------TTSBBSSSBSBSS-CEEECBSSSCCCHHH-H
T ss_pred ---------EE----EEEeCCCCEEEEEECCChHHH-------------HHHHHHHHccCCE-EEEEEECCCCccHHH-H
Confidence 00 022223457999999997654 2345567888885 555566665544433 3
Q ss_pred HHHHHhCCCCCceEEEeccCCccCC
Q 012559 194 KLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
..+..+...+.|+|+|+||+|+.+.
T Consensus 95 e~l~~~~~~~vPiIVViNKiDl~~~ 119 (537)
T 3izy_P 95 ESIQHAKDAHVPIVLAINKCDKAEA 119 (537)
T ss_dssp HHHHHHHTTTCCEEECCBSGGGTTT
T ss_pred HHHHHHHHcCCcEEEEEeccccccc
Confidence 3555555668899999999999753
No 147
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.17 E-value=1.4e-11 Score=110.87 Aligned_cols=117 Identities=18% Similarity=0.160 Sum_probs=70.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+|+|.+++|||||+++|++..+ +.... .|....
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~-~~~~~-~t~~~~---------------------------------------- 43 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCF-PENYV-PTVFEN---------------------------------------- 43 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCC-CCSEEE----------------------------------------
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCC-CCCCC-Ccccee----------------------------------------
Confidence 457899999999999999999999875 22111 111000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH--
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD-- 191 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~-- 191 (461)
+ ...+.+ ......+.|+||||.... ..+...|+.+++++| +|.+++...+...
T Consensus 44 -------~---~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~ 98 (184)
T 1m7b_A 44 -------Y---TASFEI-DTQRIELSLWDTSGSPYY-------------DNVRPLSYPDSDAVL-ICFDISRPETLDSVL 98 (184)
T ss_dssp -------E---EEEEEC-SSCEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEE-EEEETTCHHHHHHHH
T ss_pred -------E---EEEEEE-CCEEEEEEEEECCCChhh-------------hhhHHhhcCCCcEEE-EEEECCCHHHHHHHH
Confidence 0 000001 112246889999997553 233456888999655 4555543222222
Q ss_pred --HHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 192 --AIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 192 --~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
+...++...+ +.|+++|.||+|+.+.
T Consensus 99 ~~~~~~i~~~~~-~~piilv~nK~Dl~~~ 126 (184)
T 1m7b_A 99 KKWKGEIQEFCP-NTKMLLVGCKSDLRTD 126 (184)
T ss_dssp HTHHHHHHHHCT-TCEEEEEEECGGGGGC
T ss_pred HHHHHHHHHHCC-CCCEEEEEEcchhhcc
Confidence 2233344433 6899999999999753
No 148
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.16 E-value=2.4e-10 Score=119.33 Aligned_cols=113 Identities=16% Similarity=0.148 Sum_probs=72.4
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
..+|++||.+|+|||||+|+|++..+ +. ...|..+..-
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~~~~~-~~--~~~T~~~~~~--------------------------------------- 359 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLKLGQS-VT--TIPTVGFNVE--------------------------------------- 359 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC-CC--CCCCSSEEEE---------------------------------------
T ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCC-CC--cCCccceeEE---------------------------------------
Confidence 46899999999999999999999874 21 1112221100
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHH
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 194 (461)
.+.. ....+.|+||||.... ..+...|++++|.+ ++|.+++..........
T Consensus 360 --------------~~~~-~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~ad~~-i~V~D~~~~~s~~~~~~ 410 (497)
T 3lvq_E 360 --------------TVTY-KNVKFNVWDVGGQDKI-------------RPLWRHYYTGTQGL-IFVVDCADRDRIDEARQ 410 (497)
T ss_dssp --------------EEES-SSCEEEEEEECCCGGG-------------SGGGGGGGTTCCEE-EEEEETTCGGGHHHHHH
T ss_pred --------------EEEe-CCEEEEEEECCCcHHH-------------HHHHHHHhccCCEE-EEEEECcchhHHHHHHH
Confidence 0111 2367899999996654 34467899999964 55556554333333322
Q ss_pred HHHHh----CCCCCceEEEeccCCccCC
Q 012559 195 LAREV----DPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 195 l~~~~----d~~~~rti~VltK~D~~~~ 218 (461)
...++ ...+.|+|+|+||+|+.+.
T Consensus 411 ~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 411 ELHRIINDREMRDAIILIFANKQDLPDA 438 (497)
T ss_dssp HHHHHHTSGGGTTCEEEEEEECCSSSSC
T ss_pred HHHHHhhhhhcCCCcEEEEEECCCCCcC
Confidence 22222 2247899999999999754
No 149
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.16 E-value=3.6e-11 Score=118.98 Aligned_cols=112 Identities=20% Similarity=0.261 Sum_probs=66.5
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhcC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITG 116 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~g 116 (461)
+|+|+|.+++|||||+++|++..+ + +..|+ .+
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~~~-~------~~~pT-----------------------------------------~~ 198 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLGEI-V------TTIPT-----------------------------------------IG 198 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSSCC-E------EEEEE-----------------------------------------TT
T ss_pred eEEEECCCCccHHHHHHHHhCCCC-C------Ccccc-----------------------------------------cc
Confidence 799999999999999999999875 1 11121 00
Q ss_pred CCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH-HH
Q 012559 117 KSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI-KL 195 (461)
Q Consensus 117 ~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l-~l 195 (461)
+ ... .+.. ....++|+||||.... ..+...|++.+|.+| +|.+++....-.... .+
T Consensus 199 ----~--~~~--~~~~-~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~ad~vi-lV~D~~~~~s~~~~~~~~ 255 (329)
T 3o47_A 199 ----F--NVE--TVEY-KNISFTVWDVGGQDKI-------------RPLWRHYFQNTQGLI-FVVDSNDRERVNEAREEL 255 (329)
T ss_dssp ----E--EEE--EEEE-TTEEEEEEECC------------------CCSHHHHHTTEEEEE-EEEETTCSSSHHHHHHHH
T ss_pred ----e--EEE--EEec-CcEEEEEEECCCCHhH-------------HHHHHHHhccCCEEE-EEEECCchHHHHHHHHHH
Confidence 0 000 0111 2357899999995443 345678899999654 555554322222222 12
Q ss_pred HHHhC---CCCCceEEEeccCCccCCC
Q 012559 196 AREVD---PTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 196 ~~~~d---~~~~rti~VltK~D~~~~~ 219 (461)
...+. ..+.|+|+|+||+|+.+..
T Consensus 256 ~~~~~~~~~~~~piilV~NK~Dl~~~~ 282 (329)
T 3o47_A 256 MRMLAEDELRDAVLLVFANKQDLPNAM 282 (329)
T ss_dssp HHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred HHHHhhhccCCCeEEEEEECccCCccc
Confidence 22222 2378999999999998643
No 150
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.14 E-value=2.3e-11 Score=111.89 Aligned_cols=117 Identities=18% Similarity=0.189 Sum_probs=70.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+|+|.+|+|||||+++|++..+ +... ..|....
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~-~~~~-~~t~~~~---------------------------------------- 64 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCF-PENY-VPTVFEN---------------------------------------- 64 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSC-CCCSEEE----------------------------------------
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC-CCCc-CCcccee----------------------------------------
Confidence 346899999999999999999999876 2211 1111000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH--
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD-- 191 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~-- 191 (461)
+ ...+.+ ......+.|+||||.... ..+...|+.+++++|+ |.+++...+...
T Consensus 65 -------~---~~~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~il-v~D~~~~~s~~~~~ 119 (205)
T 1gwn_A 65 -------Y---TASFEI-DTQRIELSLWDTSGSPYY-------------DNVRPLSYPDSDAVLI-CFDISRPETLDSVL 119 (205)
T ss_dssp -------E---EEEEES-SSSEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEE-EEETTCHHHHHHHH
T ss_pred -------E---EEEEEE-CCEEEEEEEEeCCCcHhh-------------hHHHHhhccCCCEEEE-EEECCCHHHHHHHH
Confidence 0 000001 112246889999997553 2344568889996554 455543222222
Q ss_pred --HHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 192 --AIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 192 --~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
+...++...+ +.++++|.||+|+.+.
T Consensus 120 ~~~~~~i~~~~~-~~piilv~nK~Dl~~~ 147 (205)
T 1gwn_A 120 KKWKGEIQEFCP-NTKMLLVGCKSDLRTD 147 (205)
T ss_dssp HTHHHHHHHHCT-TCEEEEEEECGGGGGC
T ss_pred HHHHHHHHHHCC-CCCEEEEEechhhccc
Confidence 2233344433 6899999999999753
No 151
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.14 E-value=7.7e-11 Score=109.09 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDF 60 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~ 60 (461)
....|+|||++|+|||||+|+++|...
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~ 62 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHD 62 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 446899999999999999999998543
No 152
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.12 E-value=1.2e-10 Score=118.46 Aligned_cols=68 Identities=16% Similarity=0.179 Sum_probs=45.3
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---HHHHHHHHHhCCCCCceEEEecc
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT---SDAIKLAREVDPTGERTFGVLTK 212 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~---~~~l~l~~~~d~~~~rti~VltK 212 (461)
..++||||||..+. ...+..++..+|.+ ++|++++..... .+.+.+++.+.. .+.|+|+||
T Consensus 75 ~~~~iiDtPGh~~~-------------~~~~~~~~~~~D~~-ilVvda~~~~~~~qt~~~~~~~~~~~~--~~iivviNK 138 (403)
T 3sjy_A 75 RRISFIDAPGHEVL-------------MATMLSGAALMDGA-ILVVAANEPFPQPQTREHFVALGIIGV--KNLIIVQNK 138 (403)
T ss_dssp EEEEEEECCCCGGG-------------HHHHHHHHTTCSEE-EEEEETTSCSSCHHHHHHHHHHHHHTC--CCEEEEEEC
T ss_pred ceEEEEECCCcHHH-------------HHHHHHHHhhCCEE-EEEEECCCCCCcHHHHHHHHHHHHcCC--CCEEEEEEC
Confidence 46899999996543 45677888999964 455566554422 233444554432 479999999
Q ss_pred CCccCCC
Q 012559 213 LDLMDKG 219 (461)
Q Consensus 213 ~D~~~~~ 219 (461)
+|+.+..
T Consensus 139 ~Dl~~~~ 145 (403)
T 3sjy_A 139 VDVVSKE 145 (403)
T ss_dssp GGGSCHH
T ss_pred ccccchH
Confidence 9998643
No 153
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.11 E-value=1.1e-10 Score=122.54 Aligned_cols=138 Identities=17% Similarity=0.230 Sum_probs=80.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
+.+.|+++|++|+|||||+|+|++..-.....+.+... ...+..+.|+... +.
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~-------------------~~~~~~~~d~~~~------e~-- 64 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSR-------------------KAARHATSDWMEL------EK-- 64 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC-----------------------CCHHHHHHH------HH--
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeecc-------------------ccccceecccchh------hh--
Confidence 56899999999999999999998542100000000000 0000111122111 11
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
..| ..+....+.+.. ....++||||||..+. ...+..|+..+|++ ++|+++......+. .
T Consensus 65 ~~G--iTi~~~~~~~~~---~~~~i~liDTPG~~df-------------~~~~~~~l~~aD~a-llVvDa~~g~~~~t-~ 124 (528)
T 3tr5_A 65 QRG--ISVTTSVMQFPY---KDYLINLLDTPGHADF-------------TEDTYRTLTAVDSA-LMVIDAAKGVEPRT-I 124 (528)
T ss_dssp HHC--CSSSSSEEEEEE---TTEEEEEECCCCSTTC-------------CHHHHHGGGGCSEE-EEEEETTTCSCHHH-H
T ss_pred cCC--eeEEEeEEEEEe---CCEEEEEEECCCchhH-------------HHHHHHHHHhCCEE-EEEEeCCCCCCHHH-H
Confidence 122 223333333322 2467999999998765 34578899999964 55556655544443 3
Q ss_pred HHHHHhCCCCCceEEEeccCCccCC
Q 012559 194 KLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
.+.+.+...+.|+++|+||+|+...
T Consensus 125 ~~~~~~~~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 125 KLMEVCRLRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp HHHHHHHTTTCCEEEEEECTTSCCS
T ss_pred HHHHHHHHcCCCEEEEEeCCCCccc
Confidence 4556666678999999999999643
No 154
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.11 E-value=7.3e-11 Score=122.70 Aligned_cols=66 Identities=21% Similarity=0.213 Sum_probs=44.9
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccH--HHHHHHHHhCCCCCceEEEeccC
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--DAIKLAREVDPTGERTFGVLTKL 213 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~--~~l~l~~~~d~~~~rti~VltK~ 213 (461)
..++||||||..+ ....+..++..+|. +++|++++.+...+ +.+.+++. .+.|.|+|+||+
T Consensus 73 ~~i~iiDtPGh~~-------------~~~~~~~~~~~aD~-~ilVvda~~g~~~qt~e~l~~~~~---~~ip~IvviNK~ 135 (482)
T 1wb1_A 73 YRITLVDAPGHAD-------------LIRAVVSAADIIDL-ALIVVDAKEGPKTQTGEHMLILDH---FNIPIIVVITKS 135 (482)
T ss_dssp EEEEECCCSSHHH-------------HHHHHHHHTTSCCE-EEEEEETTTCSCHHHHHHHHHHHH---TTCCBCEEEECT
T ss_pred EEEEEEECCChHH-------------HHHHHHHHHhhCCE-EEEEEecCCCccHHHHHHHHHHHH---cCCCEEEEEECC
Confidence 5799999999533 24556788899995 55555666544333 23334444 468889999999
Q ss_pred CccCC
Q 012559 214 DLMDK 218 (461)
Q Consensus 214 D~~~~ 218 (461)
|+.++
T Consensus 136 Dl~~~ 140 (482)
T 1wb1_A 136 DNAGT 140 (482)
T ss_dssp TSSCH
T ss_pred Ccccc
Confidence 99853
No 155
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.10 E-value=2e-10 Score=118.08 Aligned_cols=144 Identities=14% Similarity=0.098 Sum_probs=75.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
....|+++|++++|||||+++|++..- .+..+... .+.......++.-.+++-+.+....++
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~-----~i~~~~~~-----------~~~~~~~~~g~~~~~~a~~~d~~~~er-- 77 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTG-----MVDKRTLE-----------KYEREAKEKNRETWYLSWALDTNQEER-- 77 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcC-----CCchHHHH-----------HHHHHHHhccccchhhhhhhccchhHh--
Confidence 567999999999999999999987532 11110000 000000000000001111111111111
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccc-----
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIA----- 188 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~----- 188 (461)
..| ++-+.....+..+ ...++||||||..+. ...+..++..+|+ +++|++++....
T Consensus 78 ~~G----iTid~~~~~~~~~-~~~~~iiDTPGh~~f-------------~~~~~~~~~~aD~-~ilVVDa~~g~~e~~~~ 138 (439)
T 3j2k_7 78 DKG----KTVEVGRAYFETE-KKHFTILDAPGHKSF-------------VPNMIGGASQADL-AVLVISARKGEFETGFE 138 (439)
T ss_pred hcC----ceEEEeEEEEecC-CeEEEEEECCChHHH-------------HHHHHhhHhhCCE-EEEEEECCCCccccccC
Confidence 112 2222222233333 358999999996543 4556678889996 455556655432
Q ss_pred ----cHHHHHHHHHhCCCCCc-eEEEeccCCccC
Q 012559 189 ----TSDAIKLAREVDPTGER-TFGVLTKLDLMD 217 (461)
Q Consensus 189 ----~~~~l~l~~~~d~~~~r-ti~VltK~D~~~ 217 (461)
+.+.+.+++ ..+.+ .|+|+||+|+.+
T Consensus 139 ~~~qt~e~l~~~~---~~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 139 KGGQTREHAMLAK---TAGVKHLIVLINKMDDPT 169 (439)
T ss_pred CCchHHHHHHHHH---HcCCCeEEEEeecCCCcc
Confidence 223333333 34666 899999999964
No 156
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.10 E-value=8.8e-11 Score=115.46 Aligned_cols=117 Identities=22% Similarity=0.183 Sum_probs=72.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
...+|+++|.+|+|||||++++++..+ +.....++......
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~-------------------------------------- 194 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSA-------------------------------------- 194 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCC-CCSCCCCSEEEEEE--------------------------------------
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCC-CcccCCcccceeEE--------------------------------------
Confidence 458999999999999999999998765 22211111111100
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH--
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD-- 191 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~-- 191 (461)
.+.+ ......+.|+||||.... ..+...|+.++|++| +|.+++...+...
T Consensus 195 -------------~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~ 246 (332)
T 2wkq_A 195 -------------NVMV-DGKPVNLGLWDTAGLEDY-------------DRLRPLSYPQTDVFL-ICFSLVSPASFHHVR 246 (332)
T ss_dssp -------------EEEE-TTEEEEEEEEEECCCGGG-------------TTTGGGGCTTCSEEE-EEEETTCHHHHHHHH
T ss_pred -------------EEEE-CCEEEEEEEEeCCCchhh-------------hHHHHHhccCCCEEE-EEEeCCCHHHHHHHH
Confidence 0001 111235679999997654 244567888999655 5555554332222
Q ss_pred --HHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 192 --AIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 192 --~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
+...++...+ +.|+++|+||+|+.+.
T Consensus 247 ~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 247 AKWYPEVRHHCP-NTPIILVGTKLDLRDD 274 (332)
T ss_dssp HTHHHHHHHHCT-TSCEEEEEECHHHHTC
T ss_pred HHHHHHHHhhCC-CCcEEEEEEchhcccc
Confidence 2234444444 7899999999999754
No 157
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.08 E-value=8.2e-11 Score=117.88 Aligned_cols=82 Identities=20% Similarity=0.345 Sum_probs=42.5
Q ss_pred CCcEEEeCCCCCccccC-CCCccHHHHHHHHHHHHhcCC-------------CeEEEEEecCCCccccHHHHHHHHHhCC
Q 012559 136 VNLTLIDLPGLTKVAVE-GQPESIVEDIENMVRSYVEKP-------------SCIILAISPANQDIATSDAIKLAREVDP 201 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~-~~~~~~~~~i~~~v~~yi~~~-------------~~iIL~V~~a~~d~~~~~~l~l~~~~d~ 201 (461)
..++++||||+...... ..-..+...+......|+... ++++++|.++...+...+. .+.+.+.
T Consensus 95 ~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~-~~~~~l~- 172 (361)
T 2qag_A 95 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV-AFMKAIH- 172 (361)
T ss_dssp EEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHH-HHHHHTC-
T ss_pred cceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHH-HHHHHhc-
Confidence 36899999999543211 001223344444444666543 3455556555555554443 4667775
Q ss_pred CCCceEEEeccCCccCCC
Q 012559 202 TGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 202 ~~~rti~VltK~D~~~~~ 219 (461)
.+.++|+|+||+|+....
T Consensus 173 ~~~piIlV~NK~Dl~~~~ 190 (361)
T 2qag_A 173 NKVNIVPVIAKADTLTLK 190 (361)
T ss_dssp S-SCEEEEEECCSSSCHH
T ss_pred cCCCEEEEEECCCCCCHH
Confidence 478999999999998643
No 158
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.06 E-value=4.5e-11 Score=107.62 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=21.6
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
..|+|+|++|+|||||++.|+|.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999995
No 159
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.06 E-value=3.8e-10 Score=120.42 Aligned_cols=146 Identities=14% Similarity=0.121 Sum_probs=77.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
....|++||++++|||||+|+|++... .+..+ .+ ..+.......++.-.++.-+.+...++.
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~-----~i~~~-~i----------~~~~~~~~~~g~~~~~~a~~~d~~~~e~-- 227 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLN-----IVNQS-QL----------RKLQRESETMGKSSFKFAWIMDQTNEER-- 227 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSS-----CSCCH-HH----------HHHHHHSSCSSSSCCSSSHHHHHHHHHH--
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcC-----CccHH-HH----------HHHHhhhhhccccccceeeeeccchhhh--
Confidence 467899999999999999999998743 11110 00 0000000011111112222222222222
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCc-------
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD------- 186 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d------- 186 (461)
..|. +.+.....+.. ....++||||||..+. ...+..++..+|+ +|+|++++.+
T Consensus 228 ~~Gi----Tid~~~~~~~~-~~~~~~iiDTPG~e~f-------------~~~~~~~~~~aD~-~llVVDa~~g~~e~~~~ 288 (611)
T 3izq_1 228 ERGV----TVSICTSHFST-HRANFTIVDAPGHRDF-------------VPNAIMGISQADM-AILCVDCSTNAFESGFD 288 (611)
T ss_dssp HTTT----CCSCSCCEEEC-SSCEEEEEECCSSSCH-------------HHHHTTTSSCCSE-EEEEEECSHHHHHTTCC
T ss_pred hCCe----eEeeeeEEEec-CCceEEEEECCCCccc-------------HHHHHHHHhhcCc-eEEEEECCCCcccccch
Confidence 2232 22221222333 3368999999997553 4566788899996 5555555542
Q ss_pred cccHHHHHHHHHhCCCCC-ceEEEeccCCccC
Q 012559 187 IATSDAIKLAREVDPTGE-RTFGVLTKLDLMD 217 (461)
Q Consensus 187 ~~~~~~l~l~~~~d~~~~-rti~VltK~D~~~ 217 (461)
+..+. ...+..+...+. ++|+|+||+|+.+
T Consensus 289 ~~~qt-~e~l~~~~~lgi~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 289 LDGQT-KEHMLLASSLGIHNLIIAMNKMDNVD 319 (611)
T ss_dssp TTSHH-HHHHHHHHTTTCCEEEEEEECTTTTT
T ss_pred hhhHH-HHHHHHHHHcCCCeEEEEEecccccc
Confidence 11222 222233333344 4899999999986
No 160
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.05 E-value=2.7e-10 Score=120.77 Aligned_cols=134 Identities=19% Similarity=0.246 Sum_probs=73.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
+++.|+++|+.++|||||+++|++.. +..++... +..+.|....+ +
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~t------g~i~~~~~--------------------~~~~~D~~~~E--------r 50 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYT------GAISEREK--------------------REQLLDTLDVE--------R 50 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHH------TC----------------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhcc------CCcccccc--------------------cccccccchhh--------h
Confidence 57899999999999999999998631 11111100 00011111100 0
Q ss_pred hcCCCCcccCccEEEEEecCC--CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPN--VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD 191 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~--~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~ 191 (461)
..| .++....+.+.....+ ...++||||||..+. ...+.+++..+|.+ ++|+++......+.
T Consensus 51 erG--ITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF-------------~~ev~r~l~~aD~a-ILVVDa~~gv~~qt 114 (600)
T 2ywe_A 51 ERG--ITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDF-------------SYEVSRALAACEGA-LLLIDASQGIEAQT 114 (600)
T ss_dssp -------CCCCSEEEEEECTTSCEEEEEEECCCCSGGG-------------HHHHHHHHHTCSEE-EEEEETTTBCCHHH
T ss_pred ccc--ceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhH-------------HHHHHHHHHhCCEE-EEEEECCCCccHHH
Confidence 011 2233344444443222 257889999998764 34567788999965 45566666554444
Q ss_pred HHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
.. ........+.|.|+|+||+|+...
T Consensus 115 ~~-~~~~a~~~~ipiIvviNKiDl~~a 140 (600)
T 2ywe_A 115 VA-NFWKAVEQDLVIIPVINKIDLPSA 140 (600)
T ss_dssp HH-HHHHHHHTTCEEEEEEECTTSTTC
T ss_pred HH-HHHHHHHCCCCEEEEEeccCcccc
Confidence 32 222222357899999999999753
No 161
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.04 E-value=1.3e-09 Score=108.68 Aligned_cols=25 Identities=24% Similarity=0.225 Sum_probs=23.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
..+.|+++|.+|||||||+|+|+|.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4799999999999999999999974
No 162
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.04 E-value=2.8e-10 Score=118.47 Aligned_cols=146 Identities=14% Similarity=0.132 Sum_probs=74.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
....|+++|.+++|||||+++|++... .+..+.... +.......++.-.++..+.+.... ++
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~-----~i~~~~~~~-----------~~~~~~~~g~~~~~~~~~~d~~~~--e~ 93 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLN-----IVNQSQLRK-----------LQRESETMGKSSFKFAWIMDQTNE--ER 93 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTT-----SSCHHHHHH-----------HCC-------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC-----CccHHHHHH-----------HHHHHHhcCCCcchhhhhhccchh--Hh
Confidence 456899999999999999999987621 111000000 000000000000111111111111 11
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCc-------
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD------- 186 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d------- 186 (461)
..+++.+.....+..+ ...++||||||..+. ...+..++..+|++| +|++++..
T Consensus 94 ----~~GiTi~~~~~~~~~~-~~~~~iiDTPG~~~f-------------~~~~~~~~~~aD~~l-lVvDa~~g~~~~~~~ 154 (483)
T 3p26_A 94 ----ERGVTVSICTSHFSTH-RANFTIVDAPGHRDF-------------VPNAIMGISQADMAI-LCVDCSTNAFESGFD 154 (483)
T ss_dssp -----CCSSCCCCEEEEECS-SCEEEEECCCCCGGG-------------HHHHHHHHTTCSEEE-EEEECCC------CC
T ss_pred ----hcCcceEeeeEEEecC-CceEEEEECCCcHHH-------------HHHHHHhhhhCCEEE-EEEECCCCccccccc
Confidence 1233334434444443 478999999998654 566778999999655 55555543
Q ss_pred cccH--HHHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 187 IATS--DAIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 187 ~~~~--~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
+..+ ..+.+++.+. -.+.|+|+||+|+.+.
T Consensus 155 ~~~qt~e~~~~~~~~~--~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 155 LDGQTKEHMLLASSLG--IHNLIIAMNKMDNVDW 186 (483)
T ss_dssp CCHHHHHHHHHHHHTT--CCCEEEEEECGGGGTT
T ss_pred hhhhHHHHHHHHHHcC--CCcEEEEEECcCcccc
Confidence 1122 2233444432 1469999999999863
No 163
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.03 E-value=2.6e-10 Score=120.98 Aligned_cols=134 Identities=18% Similarity=0.233 Sum_probs=70.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
++..|+|+|+.++|||||+++|++.. +..++... +..+.|....+ +
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~t------g~i~~~~~--------------------~~~~~D~~~~E--------r 48 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQIC------GGLSDREM--------------------EAQVLDSMDLE--------R 48 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHT------TC----------------------------------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc------CCcccccc--------------------cccccccchhh--------h
Confidence 46899999999999999999998642 11111100 00011111100 0
Q ss_pred hcCCCCcccCccEEEEEec--CCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH
Q 012559 114 ITGKSKQISNIPIQLSIYS--PNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD 191 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~--p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~ 191 (461)
..| .++....+.+.... .....++||||||..+. ...+.+++...|. +++|+++......+.
T Consensus 49 erG--iTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF-------------~~ev~~~l~~aD~-aILVVDa~~gv~~qt 112 (599)
T 3cb4_D 49 ERG--ITIKAQSVTLDYKASDGETYQLNFIDTPGHVDF-------------SYEVSRSLAACEG-ALLVVDAGQGVEAQT 112 (599)
T ss_dssp ----------CEEEEEEECTTSCEEEEEEEECCCCGGG-------------HHHHHHHHHHCSE-EEEEEETTTCCCTHH
T ss_pred ccc--ceeeeeEEEEEEecCCCCeEEEEEEECCCchHH-------------HHHHHHHHHHCCE-EEEEEECCCCCCHHH
Confidence 011 22333334443332 12357899999998764 4557788888996 455556665555444
Q ss_pred HHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 192 AIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
...+ ......+.|.|+|+||+|+.+.
T Consensus 113 ~~~~-~~~~~~~ipiIvViNKiDl~~a 138 (599)
T 3cb4_D 113 LANC-YTAMEMDLEVVPVLNKIDLPAA 138 (599)
T ss_dssp HHHH-HHHHHTTCEEEEEEECTTSTTC
T ss_pred HHHH-HHHHHCCCCEEEeeeccCcccc
Confidence 3322 2222347899999999999754
No 164
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.02 E-value=4.4e-10 Score=102.41 Aligned_cols=119 Identities=15% Similarity=0.183 Sum_probs=68.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
....|+++|..|||||||+++|+|..+-+......+..+.
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~---------------------------------------- 43 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFA---------------------------------------- 43 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEE----------------------------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEE----------------------------------------
Confidence 3578999999999999999999998752111100000000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH--
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD-- 191 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~-- 191 (461)
.-.+.+.+ ....+.++||||.... +.+...|+.+++.+ ++|.+.........
T Consensus 44 -----------~~~i~~~g-~~~~~~i~Dt~g~~~~-------------~~~~~~~~~~~~~~-i~v~d~~~~~s~~~~~ 97 (199)
T 2f9l_A 44 -----------TRSIQVDG-KTIKAQIWDTAGQERY-------------RRITSAYYRGAVGA-LLVYDIAKHLTYENVE 97 (199)
T ss_dssp -----------EEEEEETT-EEEEEEEEECSSGGGT-------------TCCCHHHHTTCSEE-EEEEETTCHHHHHTHH
T ss_pred -----------EEEEEECC-EEEEEEEEECCCchhh-------------hhhhHHHHhcCCEE-EEEEECcCHHHHHHHH
Confidence 00111111 1135778999996543 22345677788854 45555543322222
Q ss_pred -HHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 192 -AIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 192 -~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
++..++.....+.+.+.|+||+|+.+.
T Consensus 98 ~~~~~~~~~~~~~~~i~~v~nK~Dl~~~ 125 (199)
T 2f9l_A 98 RWLKELRDHADSNIVIMLVGNKSDLRHL 125 (199)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHHHHHHhcCCCCeEEEEEECcccccc
Confidence 222233334456899999999999753
No 165
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.00 E-value=4.8e-10 Score=101.81 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=22.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
....|++||++|+|||||+|+++|.
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3578999999999999999999974
No 166
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.99 E-value=6.4e-10 Score=116.71 Aligned_cols=69 Identities=16% Similarity=0.205 Sum_probs=49.8
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCC
Q 012559 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (461)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 214 (461)
...++||||||..+. ...+.+|+..+|++| +|+++......+ ...+.+.+...+.|.++|+||+|
T Consensus 81 ~~~i~liDTPG~~df-------------~~~~~~~l~~aD~~I-lVvDa~~g~~~~-t~~~~~~~~~~~ipiivviNK~D 145 (529)
T 2h5e_A 81 DCLVNLLDTPGHEDF-------------SEDTYRTLTAVDCCL-MVIDAAKGVEDR-TRKLMEVTRLRDTPILTFMNKLD 145 (529)
T ss_dssp TEEEEEECCCCSTTC-------------CHHHHHGGGGCSEEE-EEEETTTCSCHH-HHHHHHHHTTTTCCEEEEEECTT
T ss_pred CeEEEEEECCCChhH-------------HHHHHHHHHHCCEEE-EEEeCCccchHH-HHHHHHHHHHcCCCEEEEEcCcC
Confidence 467999999998764 245678899999655 455555444433 34466666767899999999999
Q ss_pred ccCC
Q 012559 215 LMDK 218 (461)
Q Consensus 215 ~~~~ 218 (461)
+...
T Consensus 146 l~~~ 149 (529)
T 2h5e_A 146 RDIR 149 (529)
T ss_dssp SCCS
T ss_pred Cccc
Confidence 9754
No 167
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.98 E-value=1.6e-10 Score=122.66 Aligned_cols=133 Identities=17% Similarity=0.200 Sum_probs=73.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
+.|.|+|+|+.++|||||+++|+|..+.....+..|+.... .+.++..+ ......
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~---------------------~~~~~~~~----~~~~~~ 58 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGA---------------------TEIPMDVI----EGICGD 58 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTE---------------------EEEEHHHH----HHHSCG
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCe---------------------EEEeechh----hhhccc
Confidence 57999999999999999999999865422222112211100 00011100 000000
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
..+ .+. + ....+.++||||||..+.. .+..+++..+|. +++|++++.++..+..
T Consensus 59 ~~~---~~~-------v-~~~~~~i~liDTPGhe~F~-------------~~~~r~~~~aD~-aILVvDa~~Gv~~qT~- 112 (594)
T 1g7s_A 59 FLK---KFS-------I-RETLPGLFFIDTPGHEAFT-------------TLRKRGGALADL-AILIVDINEGFKPQTQ- 112 (594)
T ss_dssp GGG---GCG-------G-GGTCCEEEEECCCTTSCCT-------------TSBCSSSBSCSE-EEEEEETTTCCCHHHH-
T ss_pred ccc---ccc-------c-ccccCCEEEEECCCcHHHH-------------HHHHHHHhhCCE-EEEEEECCCCccHhHH-
Confidence 000 000 0 0112458999999987652 223457788885 5566666655443332
Q ss_pred HHHHHhCCCCCceEEEeccCCccC
Q 012559 194 KLAREVDPTGERTFGVLTKLDLMD 217 (461)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~~ 217 (461)
..++.+...+.|+|+|+||+|+..
T Consensus 113 e~l~~l~~~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 113 EALNILRMYRTPFVVAANKIDRIH 136 (594)
T ss_dssp HHHHHHHHTTCCEEEEEECGGGST
T ss_pred HHHHHHHHcCCeEEEEeccccccc
Confidence 233334445789999999999974
No 168
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.98 E-value=2.3e-09 Score=109.99 Aligned_cols=67 Identities=15% Similarity=0.155 Sum_probs=44.7
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccH--HHHHHHHHhCCCCC-ceEEEec
Q 012559 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--DAIKLAREVDPTGE-RTFGVLT 211 (461)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~--~~l~l~~~~d~~~~-rti~Vlt 211 (461)
...++||||||..+. ...+..++..+|. +++|++++.....+ ..+.+++.+ +. +.|+|+|
T Consensus 103 ~~~~~iiDtpGh~~f-------------~~~~~~~~~~aD~-~ilVvDa~~g~~~qt~~~l~~~~~~---~~~~iIvviN 165 (434)
T 1zun_B 103 KRKFIIADTPGHEQY-------------TRNMATGASTCDL-AIILVDARYGVQTQTRRHSYIASLL---GIKHIVVAIN 165 (434)
T ss_dssp SEEEEEEECCCSGGG-------------HHHHHHHHTTCSE-EEEEEETTTCSCHHHHHHHHHHHHT---TCCEEEEEEE
T ss_pred CceEEEEECCChHHH-------------HHHHHHHHhhCCE-EEEEEECCCCCcHHHHHHHHHHHHc---CCCeEEEEEE
Confidence 457999999996553 3445678899996 55555666554333 233444443 44 5899999
Q ss_pred cCCccCC
Q 012559 212 KLDLMDK 218 (461)
Q Consensus 212 K~D~~~~ 218 (461)
|+|+.+.
T Consensus 166 K~Dl~~~ 172 (434)
T 1zun_B 166 KMDLNGF 172 (434)
T ss_dssp CTTTTTS
T ss_pred cCcCCcc
Confidence 9999863
No 169
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.98 E-value=5.7e-10 Score=112.04 Aligned_cols=62 Identities=16% Similarity=0.160 Sum_probs=41.9
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccH--HHHHHHHHhCCCCCce-EEEec-
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--DAIKLAREVDPTGERT-FGVLT- 211 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~--~~l~l~~~~d~~~~rt-i~Vlt- 211 (461)
..++||||||..+. ...+..+++.+|.+||+|. +.++..+ +.+.+++. .+.+. |+|+|
T Consensus 60 ~~i~iiDtPGh~~f-------------~~~~~~~~~~aD~ailVvd--~~g~~~qt~e~~~~~~~---~~i~~~ivvvNN 121 (370)
T 2elf_A 60 RNMVFVDAHSYPKT-------------LKSLITALNISDIAVLCIP--PQGLDAHTGECIIALDL---LGFKHGIIALTR 121 (370)
T ss_dssp SEEEEEECTTTTTC-------------HHHHHHHHHTCSEEEEEEC--TTCCCHHHHHHHHHHHH---TTCCEEEEEECC
T ss_pred eEEEEEECCChHHH-------------HHHHHHHHHHCCEEEEEEc--CCCCcHHHHHHHHHHHH---cCCCeEEEEEEe
Confidence 56899999998664 3445567789997666555 5454433 33334444 35677 99999
Q ss_pred cCCc
Q 012559 212 KLDL 215 (461)
Q Consensus 212 K~D~ 215 (461)
|+|+
T Consensus 122 K~Dl 125 (370)
T 2elf_A 122 SDST 125 (370)
T ss_dssp GGGS
T ss_pred ccCC
Confidence 9999
No 170
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.98 E-value=1.4e-10 Score=120.38 Aligned_cols=113 Identities=20% Similarity=0.337 Sum_probs=70.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
+.|.|+++|+.++|||||+++|.+..+.....+..|...
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i----------------------------------------- 41 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHI----------------------------------------- 41 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCS-----------------------------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeE-----------------------------------------
Confidence 679999999999999999999997654211111111110
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccH--H
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--D 191 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~--~ 191 (461)
+ .. .+.. +...++||||||..... .+..+++..+|.+||+| +++.....+ +
T Consensus 42 --~------~~----~v~~-~~~~i~~iDTPGhe~f~-------------~~~~~~~~~aD~aILVV-da~~g~~~qT~e 94 (501)
T 1zo1_I 42 --G------AY----HVET-ENGMITFLDTPGHAAFT-------------SMRARGAQATDIVVLVV-AADDGVMPQTIE 94 (501)
T ss_dssp --S------CC----CCCT-TSSCCCEECCCTTTCCT-------------TSBCSSSBSCSSEEEEE-ETTTBSCTTTHH
T ss_pred --E------EE----EEEE-CCEEEEEEECCCcHHHH-------------HHHHHHHhhCCEEEEEe-ecccCccHHHHH
Confidence 0 00 0111 22578999999986652 23346778888655555 565443332 3
Q ss_pred HHHHHHHhCCCCCceEEEeccCCccC
Q 012559 192 AIKLAREVDPTGERTFGVLTKLDLMD 217 (461)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~ 217 (461)
.+..++ ..+.|+|+|+||+|+.+
T Consensus 95 ~l~~~~---~~~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 95 AIQHAK---AAQVPVVVAVNKIDKPE 117 (501)
T ss_dssp HHHHHH---HTTCCEEEEEECSSSST
T ss_pred HHHHHH---hcCceEEEEEEeccccc
Confidence 333333 34788999999999975
No 171
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.97 E-value=1.3e-09 Score=110.91 Aligned_cols=68 Identities=15% Similarity=0.128 Sum_probs=44.9
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCc-eEEEeccC
Q 012559 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGER-TFGVLTKL 213 (461)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~r-ti~VltK~ 213 (461)
...++||||||..+. ...+..++..+|.+|++ ++++.....+. .+.+..+...+.+ .++|+||+
T Consensus 74 ~~~~~iiDtpG~~~f-------------~~~~~~~~~~aD~~ilV-vda~~g~~~qt-~~~l~~~~~~~ip~iivviNK~ 138 (405)
T 2c78_A 74 KRHYSHVDCPGHADY-------------IKNMITGAAQMDGAILV-VSAADGPMPQT-REHILLARQVGVPYIVVFMNKV 138 (405)
T ss_dssp SCEEEEEECCCSGGG-------------HHHHHHHHTTCSSEEEE-EETTTCCCHHH-HHHHHHHHHTTCCCEEEEEECG
T ss_pred CeEEEEEECCChHHH-------------HHHHHHHHHHCCEEEEE-EECCCCCcHHH-HHHHHHHHHcCCCEEEEEEECc
Confidence 468999999997653 45567788999965554 55554433322 2233333334677 78999999
Q ss_pred CccC
Q 012559 214 DLMD 217 (461)
Q Consensus 214 D~~~ 217 (461)
|+.+
T Consensus 139 Dl~~ 142 (405)
T 2c78_A 139 DMVD 142 (405)
T ss_dssp GGCC
T ss_pred cccC
Confidence 9985
No 172
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.96 E-value=1.4e-09 Score=110.88 Aligned_cols=67 Identities=16% Similarity=0.223 Sum_probs=42.9
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcc---ccHHHHHHHHHhCCCCCceEEEecc
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI---ATSDAIKLAREVDPTGERTFGVLTK 212 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~---~~~~~l~l~~~~d~~~~rti~VltK 212 (461)
..++||||||..+. ...+..++..+|. +++|++++... .+.+.+.+++.+. ..+.|+|+||
T Consensus 83 ~~i~iiDtPGh~~f-------------~~~~~~~~~~~D~-~ilVvda~~g~~~~qt~e~l~~~~~~~--~~~iivviNK 146 (410)
T 1kk1_A 83 RRVSFIDAPGHEAL-------------MTTMLAGASLMDG-AILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNK 146 (410)
T ss_dssp EEEEEEECSSHHHH-------------HHHHHHCGGGCSE-EEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEEC
T ss_pred cEEEEEECCChHHH-------------HHHHHhhhhhCCE-EEEEEECCCCCCChhHHHHHHHHHHcC--CCcEEEEEEC
Confidence 46899999995331 3445566778885 55555666543 2233344555543 2478999999
Q ss_pred CCccCC
Q 012559 213 LDLMDK 218 (461)
Q Consensus 213 ~D~~~~ 218 (461)
+|+.+.
T Consensus 147 ~Dl~~~ 152 (410)
T 1kk1_A 147 IELVDK 152 (410)
T ss_dssp GGGSCH
T ss_pred ccCCCH
Confidence 999864
No 173
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.96 E-value=5e-09 Score=104.66 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G 57 (461)
..+.|+++|.+|+|||||+++|++
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999999974
No 174
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.94 E-value=4.1e-10 Score=121.98 Aligned_cols=69 Identities=14% Similarity=0.200 Sum_probs=47.9
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCC
Q 012559 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (461)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 214 (461)
...+.||||||..+. ...+..++..+|. +|+|+++......+.. .+.+.+...+.+.++|+||+|
T Consensus 74 ~~~i~liDTPG~~df-------------~~~~~~~l~~aD~-~llVvDa~~g~~~~~~-~~~~~~~~~~~p~ilviNK~D 138 (693)
T 2xex_A 74 GHRVNIIDTPGHVDF-------------TVEVERSLRVLDG-AVTVLDAQSGVEPQTE-TVWRQATTYGVPRIVFVNKMD 138 (693)
T ss_dssp TEEEEEECCCCCSSC-------------CHHHHHHHHHCSE-EEEEEETTTBSCHHHH-HHHHHHHHTTCCEEEEEECTT
T ss_pred CeeEEEEECcCCcch-------------HHHHHHHHHHCCE-EEEEECCCCCCcHHHH-HHHHHHHHcCCCEEEEEECCC
Confidence 467999999999764 2346778888996 5555566555444332 234444445789999999999
Q ss_pred ccCC
Q 012559 215 LMDK 218 (461)
Q Consensus 215 ~~~~ 218 (461)
+...
T Consensus 139 l~~~ 142 (693)
T 2xex_A 139 KLGA 142 (693)
T ss_dssp STTC
T ss_pred cccc
Confidence 9854
No 175
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.94 E-value=4.6e-09 Score=96.10 Aligned_cols=78 Identities=21% Similarity=0.323 Sum_probs=42.6
Q ss_pred CcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhc---CCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccC
Q 012559 137 NLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE---KPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKL 213 (461)
Q Consensus 137 ~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~---~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~ 213 (461)
.+.++||||+..... +....+.+...+..|++ ..+. +++|.++.......+ ..+.+.+...+.+.++|.||+
T Consensus 73 ~~~l~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~nK~ 147 (210)
T 1pui_A 73 GKRLVDLPGYGYAEV---PEEMKRKWQRALGEYLEKRQSLQG-LVVLMDIRHPLKDLD-QQMIEWAVDSNIAVLVLLTKA 147 (210)
T ss_dssp TEEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEEE-EEEEEETTSCCCHHH-HHHHHHHHHTTCCEEEEEECG
T ss_pred CEEEEECcCCccccc---CHHHHHHHHHHHHHHHHhhhcccE-EEEEEECCCCCchhH-HHHHHHHHHcCCCeEEEEecc
Confidence 678999999864211 11222233445555653 4554 455566654333222 123333334468899999999
Q ss_pred CccCCC
Q 012559 214 DLMDKG 219 (461)
Q Consensus 214 D~~~~~ 219 (461)
|+...+
T Consensus 148 D~~s~~ 153 (210)
T 1pui_A 148 DKLASG 153 (210)
T ss_dssp GGSCHH
T ss_pred cCCCch
Confidence 998654
No 176
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.94 E-value=9.9e-10 Score=99.55 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=24.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDF 60 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~ 60 (461)
....|+++|..|||||||++.|+|..+
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCC
Confidence 357899999999999999999999875
No 177
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.94 E-value=3.1e-09 Score=108.22 Aligned_cols=68 Identities=18% Similarity=0.218 Sum_probs=42.1
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcc-c--cHHHHHHHHHhCCCCCceEEEecc
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI-A--TSDAIKLAREVDPTGERTFGVLTK 212 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~-~--~~~~l~l~~~~d~~~~rti~VltK 212 (461)
..++||||||..+. ......++..+|. +++|++++... . +.+.+.+++.+. ..+.|+|+||
T Consensus 81 ~~i~iiDtPGh~~f-------------~~~~~~~~~~~D~-~ilVvda~~g~~~~qt~e~l~~~~~l~--~~~iivv~NK 144 (408)
T 1s0u_A 81 RRVSFVDSPGHETL-------------MATMLSGASLMDG-AILVIAANEPCPQPQTKEHLMALEILG--IDKIIIVQNK 144 (408)
T ss_dssp EEEEEEECSSHHHH-------------HHHHHTTCSCCSE-EEEEEETTSCSSCHHHHHHHHHHHHTT--CCCEEEEEEC
T ss_pred cEEEEEECCCHHHH-------------HHHHHHhHhhCCE-EEEEEECCCCCCCchhHHHHHHHHHcC--CCeEEEEEEc
Confidence 46899999994321 3344556677785 55556666543 2 223333444432 2478999999
Q ss_pred CCccCCC
Q 012559 213 LDLMDKG 219 (461)
Q Consensus 213 ~D~~~~~ 219 (461)
+|+.+..
T Consensus 145 ~Dl~~~~ 151 (408)
T 1s0u_A 145 IDLVDEK 151 (408)
T ss_dssp TTSSCTT
T ss_pred cCCCCHH
Confidence 9998643
No 178
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.91 E-value=3.8e-09 Score=109.06 Aligned_cols=143 Identities=21% Similarity=0.250 Sum_probs=76.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCC-CCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRD-FLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~-~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~ 112 (461)
....|+++|+.++|||||+|+|++.. .++... + ..+..-....++.-.+++-+.+....+..
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~-~----------------~~~~~~~~~~g~~~~~~a~~~d~~~~er~ 68 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRT-I----------------EKFEKEAAELGKGSFKYAWVLDKLKAERE 68 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHH-H----------------HHHHHHGGGGSSSCCCHHHHHHHHHHHHH
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHH-H----------------HHhhhhHHhcCCcchhhhhhhccchhHHh
Confidence 45789999999999999999999741 111000 0 00000000001111133333333332222
Q ss_pred hhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcc-----
Q 012559 113 RITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI----- 187 (461)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~----- 187 (461)
.|....+ .. ..+..+ ...++||||||..+. ...+..++..+|.+| +|+++....
T Consensus 69 --~GiTi~~--~~--~~~~~~-~~~~~iiDtPGh~~f-------------~~~~~~~~~~aD~~i-lVvda~~g~~~~sf 127 (458)
T 1f60_A 69 --RGITIDI--AL--WKFETP-KYQVTVIDAPGHRDF-------------IKNMITGTSQADCAI-LIIAGGVGEFEAGI 127 (458)
T ss_dssp --TTCCCSC--SC--EEEECS-SEEEEEEECCCCTTH-------------HHHHHHSSSCCSEEE-EEEECSHHHHHHHT
T ss_pred --cCcEEEE--EE--EEEecC-CceEEEEECCCcHHH-------------HHHHHhhhhhCCEEE-EEEeCCcCcccccc
Confidence 2322111 11 223333 357999999996542 455678899999644 555665432
Q ss_pred ----ccHHHHHHHHHhCCCCCc-eEEEeccCCccC
Q 012559 188 ----ATSDAIKLAREVDPTGER-TFGVLTKLDLMD 217 (461)
Q Consensus 188 ----~~~~~l~l~~~~d~~~~r-ti~VltK~D~~~ 217 (461)
.+...+.+++. .+.+ .|+|+||+|+.+
T Consensus 128 ~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 128 SKDGQTREHALLAFT---LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp CTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGT
T ss_pred CcchhHHHHHHHHHH---cCCCeEEEEEEcccccc
Confidence 12223334443 3555 889999999984
No 179
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.86 E-value=1.6e-09 Score=117.43 Aligned_cols=69 Identities=14% Similarity=0.177 Sum_probs=47.7
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCC
Q 012559 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (461)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 214 (461)
...++||||||..+. ...+.+++..+|.+| +|+++......+.. .+.+.+...+.+.++|+||+|
T Consensus 76 ~~~i~liDTPG~~df-------------~~~~~~~l~~aD~~i-lVvDa~~g~~~~t~-~~~~~~~~~~~p~ivviNKiD 140 (691)
T 1dar_A 76 DHRINIIDTPGHVDF-------------TIEVERSMRVLDGAI-VVFDSSQGVEPQSE-TVWRQAEKYKVPRIAFANKMD 140 (691)
T ss_dssp TEEEEEECCCSSTTC-------------HHHHHHHHHHCSEEE-EEEETTTCSCHHHH-HHHHHHHHTTCCEEEEEECTT
T ss_pred CeEEEEEECcCccch-------------HHHHHHHHHHCCEEE-EEEECCCCcchhhH-HHHHHHHHcCCCEEEEEECCC
Confidence 467999999998664 456788888999655 55555544443332 233344445789999999999
Q ss_pred ccCC
Q 012559 215 LMDK 218 (461)
Q Consensus 215 ~~~~ 218 (461)
+...
T Consensus 141 ~~~~ 144 (691)
T 1dar_A 141 KTGA 144 (691)
T ss_dssp STTC
T ss_pred cccC
Confidence 9854
No 180
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.85 E-value=4.1e-09 Score=106.85 Aligned_cols=66 Identities=18% Similarity=0.171 Sum_probs=43.9
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH--HHHHHHHhCCCCCc-eEEEec
Q 012559 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD--AIKLAREVDPTGER-TFGVLT 211 (461)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~--~l~l~~~~d~~~~r-ti~Vlt 211 (461)
...++||||||..+. ...+..++..+|.+| +|++++.....+. .+.+++. .+.+ .|+|+|
T Consensus 65 ~~~~~iiDtpG~~~f-------------~~~~~~~~~~aD~~i-lVvda~~g~~~qt~e~l~~~~~---~~vp~iivviN 127 (397)
T 1d2e_A 65 ARHYAHTDCPGHADY-------------VKNMITGTAPLDGCI-LVVAANDGPMPQTREHLLLARQ---IGVEHVVVYVN 127 (397)
T ss_dssp SCEEEEEECSSHHHH-------------HHHHHHTSSCCSEEE-EEEETTTCSCHHHHHHHHHHHH---TTCCCEEEEEE
T ss_pred CeEEEEEECCChHHH-------------HHHHHhhHhhCCEEE-EEEECCCCCCHHHHHHHHHHHH---cCCCeEEEEEE
Confidence 468999999996442 345677889999655 5556655443332 2333433 4677 589999
Q ss_pred cCCccC
Q 012559 212 KLDLMD 217 (461)
Q Consensus 212 K~D~~~ 217 (461)
|+|+.+
T Consensus 128 K~Dl~~ 133 (397)
T 1d2e_A 128 KADAVQ 133 (397)
T ss_dssp CGGGCS
T ss_pred CcccCC
Confidence 999985
No 181
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.84 E-value=1.5e-08 Score=109.85 Aligned_cols=136 Identities=13% Similarity=0.123 Sum_probs=79.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCC-CCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRD-FLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETD 112 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~-~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~ 112 (461)
+.+.|+|+|+.++|||||+++|+... .+.+. +-+ ..+..+.|+...+.
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~-g~v-----------------------~~g~~~~D~~~~E~------- 57 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKI-GEV-----------------------HDGAATMDWMEQEQ------- 57 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccc-ccc-----------------------CCCceeecChhhHH-------
Confidence 67899999999999999999997531 11110 000 01112233332211
Q ss_pred hhcCCCCcccCccEEEEEec----CCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccc
Q 012559 113 RITGKSKQISNIPIQLSIYS----PNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIA 188 (461)
Q Consensus 113 ~~~g~~~~~s~~~i~l~i~~----p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~ 188 (461)
..| .++....+.+...+ .....++||||||..+. ...+..++..+|.+ ++|+++.....
T Consensus 58 -~rg--iTi~~~~~~~~~~~~~~~~~~~~i~liDTPG~~df-------------~~~~~~~l~~aD~a-IlVvDa~~gv~ 120 (704)
T 2rdo_7 58 -ERG--ITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDF-------------TIEVERSMRVLDGA-VMVYCAVGGVQ 120 (704)
T ss_pred -hcC--ceeeeceEEEEECCccccCCceeEEEEeCCCccch-------------HHHHHHHHHHCCEE-EEEEeCCCCCc
Confidence 011 11222222222211 12268999999998764 45677888899964 45555655544
Q ss_pred cHHHHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 189 TSDAIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 189 ~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
.+. ..+.+.+...+.+.++|+||+|+...
T Consensus 121 ~qt-~~~~~~~~~~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 121 PQS-ETVWRQANKYKVPRIAFVNKMDRMGA 149 (704)
T ss_pred HHH-HHHHHHHHHcCCCEEEEEeCCCcccc
Confidence 332 23445555567899999999998754
No 182
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.82 E-value=5.9e-09 Score=105.71 Aligned_cols=82 Identities=15% Similarity=0.285 Sum_probs=49.9
Q ss_pred CCcEEEeCCCCCccccCC-CCcc----HHHHHHHHHHHHhc---------C--CCeEEEEEecCCCccccHHHHHHHHHh
Q 012559 136 VNLTLIDLPGLTKVAVEG-QPES----IVEDIENMVRSYVE---------K--PSCIILAISPANQDIATSDAIKLAREV 199 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~-~~~~----~~~~i~~~v~~yi~---------~--~~~iIL~V~~a~~d~~~~~~l~l~~~~ 199 (461)
+.++++|+||+....... .-.. +...+......+.. + .|+++++++|+..++...+ ..+++.+
T Consensus 95 ~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-ieilk~L 173 (427)
T 2qag_B 95 LKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-LVTMKKL 173 (427)
T ss_dssp EEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-HHHHHHT
T ss_pred cccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-HHHHHHH
Confidence 478999999997532100 0011 22233334444421 1 1346888899887777766 4588888
Q ss_pred CCCCCceEEEeccCCccCCC
Q 012559 200 DPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 200 d~~~~rti~VltK~D~~~~~ 219 (461)
. .+.++|+|+||+|.+.+.
T Consensus 174 ~-~~~~vI~Vi~KtD~Lt~~ 192 (427)
T 2qag_B 174 D-SKVNIIPIIAKADAISKS 192 (427)
T ss_dssp C-SCSEEEEEESCGGGSCHH
T ss_pred h-hCCCEEEEEcchhccchH
Confidence 7 689999999999998654
No 183
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.80 E-value=5.5e-09 Score=107.20 Aligned_cols=67 Identities=22% Similarity=0.334 Sum_probs=44.0
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCc-------cccHH--HHHHHHHhCCCCC-
Q 012559 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-------IATSD--AIKLAREVDPTGE- 204 (461)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d-------~~~~~--~l~l~~~~d~~~~- 204 (461)
...++||||||..+. ...+..++..+|++|| |+++..+ +..+. ...+++.+ +.
T Consensus 83 ~~~~~iiDtpG~~~f-------------~~~~~~~~~~aD~~il-VvDa~~gsfe~~~~~~~qt~~~~~~~~~~---~~~ 145 (435)
T 1jny_A 83 KYFFTIIDAPGHRDF-------------VKNMITGASQADAAIL-VVSAKKGEYEAGMSVEGQTREHIILAKTM---GLD 145 (435)
T ss_dssp SCEEEECCCSSSTTH-------------HHHHHHTSSCCSEEEE-EEECSTTHHHHHHSTTCHHHHHHHHHHHT---TCT
T ss_pred CeEEEEEECCCcHHH-------------HHHHHhhhhhcCEEEE-EEECCCCccccccccchHHHHHHHHHHHc---CCC
Confidence 367999999997654 3456778999996555 4555544 32222 22233333 43
Q ss_pred ceEEEeccCCccCC
Q 012559 205 RTFGVLTKLDLMDK 218 (461)
Q Consensus 205 rti~VltK~D~~~~ 218 (461)
+.|+|+||+|+.+.
T Consensus 146 ~iivviNK~Dl~~~ 159 (435)
T 1jny_A 146 QLIVAVNKMDLTEP 159 (435)
T ss_dssp TCEEEEECGGGSSS
T ss_pred eEEEEEEcccCCCc
Confidence 58899999999863
No 184
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.79 E-value=3.3e-09 Score=100.91 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=23.4
Q ss_pred CCCCEEEEECCC---------CCCHHHHHHHhhCC
Q 012559 33 EALPSVAVVGGQ---------SSGKSSVLESVVGR 58 (461)
Q Consensus 33 ~~lP~IvVvG~~---------ssGKSSllnal~G~ 58 (461)
.....|+|||.+ |+|||||+|+|++.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 356789999999 99999999999994
No 185
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.79 E-value=2.2e-08 Score=101.82 Aligned_cols=82 Identities=17% Similarity=0.392 Sum_probs=41.2
Q ss_pred CCcEEEeCCCCCccccCC-CCccHHHHHHHHHHHHh-----------cCCC--eEEEEEecCCCccccHHHHHHHHHhCC
Q 012559 136 VNLTLIDLPGLTKVAVEG-QPESIVEDIENMVRSYV-----------EKPS--CIILAISPANQDIATSDAIKLAREVDP 201 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~-~~~~~~~~i~~~v~~yi-----------~~~~--~iIL~V~~a~~d~~~~~~l~l~~~~d~ 201 (461)
+.++++|+||+....... .-..+.+.+......|+ .+++ ++++++.|....+...+ ..+++.+..
T Consensus 88 ~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d-~~~lk~L~~ 166 (418)
T 2qag_C 88 LLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD-IEFMKRLHE 166 (418)
T ss_dssp EEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHH-HHHHHHHTT
T ss_pred cceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHH-HHHHHHHhc
Confidence 478999999997642110 00122222333333443 3444 23444444323454444 346777765
Q ss_pred CCCceEEEeccCCccCCC
Q 012559 202 TGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 202 ~~~rti~VltK~D~~~~~ 219 (461)
+.++|+|+||+|++.+.
T Consensus 167 -~v~iIlVinK~Dll~~~ 183 (418)
T 2qag_C 167 -KVNIIPLIAKADTLTPE 183 (418)
T ss_dssp -TSEEEEEEESTTSSCHH
T ss_pred -cCcEEEEEEcccCccHH
Confidence 78999999999998643
No 186
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.79 E-value=1.1e-08 Score=104.04 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=22.8
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCC
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.+.|++||.+||||||||++|+|..
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCC
Confidence 4679999999999999999999984
No 187
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.78 E-value=4.2e-09 Score=116.46 Aligned_cols=67 Identities=16% Similarity=0.212 Sum_probs=47.8
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCC
Q 012559 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (461)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 214 (461)
...+.||||||..+. ...+..|++.+|+ +++|+++......+.. .+.+.+...+.+.|+|+||+|
T Consensus 97 ~~~i~liDTPG~~df-------------~~~~~~~l~~aD~-ailVvDa~~g~~~qt~-~~~~~~~~~~~p~ilviNK~D 161 (842)
T 1n0u_A 97 SFLINLIDSPGHVDF-------------SSEVTAALRVTDG-ALVVVDTIEGVCVQTE-TVLRQALGERIKPVVVINKVD 161 (842)
T ss_dssp EEEEEEECCCCCCSS-------------CHHHHHHHHTCSE-EEEEEETTTBSCHHHH-HHHHHHHHTTCEEEEEEECHH
T ss_pred CceEEEEECcCchhh-------------HHHHHHHHHhCCE-EEEEEeCCCCCCHHHH-HHHHHHHHcCCCeEEEEECCC
Confidence 357899999999875 3457788999996 4555566655544443 234444445789999999999
Q ss_pred cc
Q 012559 215 LM 216 (461)
Q Consensus 215 ~~ 216 (461)
+.
T Consensus 162 ~~ 163 (842)
T 1n0u_A 162 RA 163 (842)
T ss_dssp HH
T ss_pred cc
Confidence 87
No 188
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.78 E-value=3.9e-10 Score=119.97 Aligned_cols=65 Identities=20% Similarity=0.237 Sum_probs=32.5
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCc-----c----ccHHHHHHHHHhCCCCCc-
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-----I----ATSDAIKLAREVDPTGER- 205 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d-----~----~~~~~l~l~~~~d~~~~r- 205 (461)
..++||||||..+.. ..+..++..+|++| +|++++.+ + .+...+.+++.+ +.+
T Consensus 255 ~~i~iiDTPGh~~f~-------------~~~~~~~~~aD~al-LVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~ 317 (592)
T 3mca_A 255 KIYEIGDAPGHRDFI-------------SGMIAGASSADFAV-LVVDSSQNNFERGFLENGQTREHAYLLRAL---GISE 317 (592)
T ss_dssp ----CCEEESSSEEE-------------EECCC-------CC-SEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCC
T ss_pred eEEEEEECCChHHHH-------------HHHHHHHhhCCEEE-EEEECCCCccccccccchHHHHHHHHHHHc---CCCe
Confidence 688999999987652 12334567788544 45555432 2 223333344443 555
Q ss_pred eEEEeccCCccC
Q 012559 206 TFGVLTKLDLMD 217 (461)
Q Consensus 206 ti~VltK~D~~~ 217 (461)
+|+|+||+|+.+
T Consensus 318 iIvviNKiDl~~ 329 (592)
T 3mca_A 318 IVVSVNKLDLMS 329 (592)
T ss_dssp EEEEEECGGGGT
T ss_pred EEEEEecccccc
Confidence 889999999986
No 189
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.76 E-value=5.2e-08 Score=96.69 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=22.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
+.+.|+++|.+|+|||||+|+|+|.
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 5688999999999999999999854
No 190
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.76 E-value=6.9e-09 Score=103.29 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=26.9
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccE
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPL 73 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~ 73 (461)
.+|++||.+|+|||||+|+|+|..+.......||..|.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~ 40 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPN 40 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECce
Confidence 57999999999999999999998742222234566654
No 191
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.76 E-value=1.5e-08 Score=106.81 Aligned_cols=135 Identities=14% Similarity=0.226 Sum_probs=78.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcC--CCCcccChHHHHHHHHHHh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHA--PRKKFTDFAAVRKEISDET 111 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~--~~~~~~d~~~v~~~i~~~~ 111 (461)
+...|+|||+..+|||||.++|+-.. |.. ++. +..-.. .+..+.|+.+++++
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~t------G~i-~~~--------------G~V~~~~~~~~~~~D~~~~Ere----- 83 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFG------GAI-QMA--------------GSVKARKAARHATSDWMAMERE----- 83 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHT------TCH-HHH--------------HHHHHC---------------------
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhc------Ccc-ccc--------------ceeecCccccccccCChHHHHH-----
Confidence 45789999999999999999997331 111 110 000000 01123444443321
Q ss_pred hhhcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHH
Q 012559 112 DRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSD 191 (461)
Q Consensus 112 ~~~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~ 191 (461)
-| -++....+.+.. +...++||||||..++. .-+.+.++-.|+.| +|++|..+...+.
T Consensus 84 ---RG--ITI~s~~~~~~~---~~~~iNlIDTPGHvDF~-------------~Ev~raL~~~DgAv-lVvda~~GV~~qT 141 (548)
T 3vqt_A 84 ---RG--ISVTTSVMQFPY---RDRVVNLLDTPGHQDFS-------------EDTYRVLTAVDSAL-VVIDAAKGVEAQT 141 (548)
T ss_dssp ---------CTTTEEEEEE---TTEEEEEECCCCGGGCS-------------HHHHHHHHSCSEEE-EEEETTTBSCHHH
T ss_pred ---CC--CcEeeceEEEEE---CCEEEEEEeCCCcHHHH-------------HHHHHHHHhcCceE-EEeecCCCccccc
Confidence 11 223333443332 34789999999998873 34677888889754 5556666666655
Q ss_pred HHHHHHHhCCCCCceEEEeccCCccC
Q 012559 192 AIKLAREVDPTGERTFGVLTKLDLMD 217 (461)
Q Consensus 192 ~l~l~~~~d~~~~rti~VltK~D~~~ 217 (461)
.. +.+.+...+.|.|+++||+|...
T Consensus 142 ~~-v~~~a~~~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 142 RK-LMDVCRMRATPVMTFVNKMDREA 166 (548)
T ss_dssp HH-HHHHHHHTTCCEEEEEECTTSCC
T ss_pred HH-HHHHHHHhCCceEEEEecccchh
Confidence 43 55666677899999999999864
No 192
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.76 E-value=1.6e-09 Score=108.75 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=21.8
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
..|+++|.+|+|||||+|+|+|.
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhh
Confidence 57999999999999999999987
No 193
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.72 E-value=3.3e-09 Score=106.40 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=22.3
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.+|+++|.+|+|||||+|+|+|..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhh
Confidence 579999999999999999999874
No 194
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.68 E-value=2.3e-08 Score=97.49 Aligned_cols=137 Identities=21% Similarity=0.324 Sum_probs=64.1
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhhc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRIT 115 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~~ 115 (461)
-.|+|+|+.|+|||||++.|.|...+|.+. +.- . +. .+. .
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~--~---------------------g~------~~~----------~ 58 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDLYPERV-ISG--A---------------------AE------KIE----------R 58 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC----------------------------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccCCCC-ccc--C---------------------Cc------ccC----------C
Confidence 467999999999999999999975545432 100 0 00 000 0
Q ss_pred CCCCcccCccEEEEEecC-CCCCcEEEeCCCCCccccC-CCCccHHHHHHHHHHHHhcCC-------------CeEEEEE
Q 012559 116 GKSKQISNIPIQLSIYSP-NVVNLTLIDLPGLTKVAVE-GQPESIVEDIENMVRSYVEKP-------------SCIILAI 180 (461)
Q Consensus 116 g~~~~~s~~~i~l~i~~p-~~~~l~lvDtPGi~~~~~~-~~~~~~~~~i~~~v~~yi~~~-------------~~iIL~V 180 (461)
+ ..+ ..+.+.+..+ ....|+++||||+...... ..-..+...+......|+.+. .++++++
T Consensus 59 t--~~~--~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ld 134 (301)
T 2qnr_A 59 T--VQI--EASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFI 134 (301)
T ss_dssp ----------CEEEEC---CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEE
T ss_pred c--ceE--eeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeee
Confidence 0 000 0111111111 2357899999998532110 011223333444444565432 2234444
Q ss_pred ecCCCccccHHHHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 181 SPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 181 ~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
.|....+...+ ..+++.+.+ ..++++|+||.|+..+
T Consensus 135 ePt~~~Ld~~~-~~~l~~l~~-~~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 135 SPFGHGLKPLD-VAFMKAIHN-KVNIVPVIAKADTLTL 170 (301)
T ss_dssp CSSSSSCCHHH-HHHHHHHTT-TSCEEEEECCGGGSCH
T ss_pred cCcccCCCHHH-HHHHHHHHh-cCCEEEEEEeCCCCCH
Confidence 44333344433 356777764 5689999999999854
No 195
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.67 E-value=2.1e-08 Score=109.06 Aligned_cols=136 Identities=14% Similarity=0.192 Sum_probs=79.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
++..|+|||+..+|||||.++|+-.. |. ++....+. .+..++|+.+.+++
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~------g~-i~~~g~v~----------------~~~~~~D~~~~E~e------- 61 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYT------GV-NHKLGEVH----------------DGAATTDWMVQEQE------- 61 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHH------HH-HHHC-----------------------------------------
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhc------CC-CCcCceec----------------CCCccCCChHHHHH-------
Confidence 56789999999999999999998321 11 11111110 12233444433211
Q ss_pred hcCCCCcccCccEEEEEecC----CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc
Q 012559 114 ITGKSKQISNIPIQLSIYSP----NVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT 189 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p----~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~ 189 (461)
-| -++....+.+...+. +...++||||||..++ ..-+.+.++-.|..| +|+||..+...
T Consensus 62 -RG--ITI~s~~~s~~~~~~~~~~~~~~iNlIDTPGHvDF-------------~~Ev~~aLr~~Dgav-lvVDaveGV~~ 124 (709)
T 4fn5_A 62 -RG--ITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDF-------------TIEVERSLRVLDGAV-VVFCGTSGVEP 124 (709)
T ss_dssp ---------CCEEEEEECCTTSCSCCEEEEEECCCSCTTC-------------HHHHHHHHHHCSEEE-EEEETTTCSCH
T ss_pred -cC--CeEEeeeEEEEeccCcCCCCCEEEEEEeCCCCccc-------------HHHHHHHHHHhCeEE-EEEECCCCCch
Confidence 11 233344455544332 2356999999999887 344667778888644 55566667766
Q ss_pred HHHHHHHHHhCCCCCceEEEeccCCccC
Q 012559 190 SDAIKLAREVDPTGERTFGVLTKLDLMD 217 (461)
Q Consensus 190 ~~~l~l~~~~d~~~~rti~VltK~D~~~ 217 (461)
+... +.+.+...+.|.|+||||+|...
T Consensus 125 qT~~-v~~~a~~~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 125 QSET-VWRQANKYGVPRIVYVNKMDRQG 151 (709)
T ss_dssp HHHH-HHHHHHHHTCCEEEEEECSSSTT
T ss_pred hHHH-HHHHHHHcCCCeEEEEccccccC
Confidence 5543 56666666899999999999863
No 196
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.67 E-value=1.9e-07 Score=92.40 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=22.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
.-..++++|.+|||||||+|+|+|.
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999965
No 197
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.65 E-value=8e-09 Score=110.91 Aligned_cols=133 Identities=17% Similarity=0.191 Sum_probs=82.0
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRI 114 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~~ 114 (461)
+..|+|+|+..+|||||.++|+-.. |..++ ... ...+..+.|+...+++
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~------G~i~~-~g~----------------v~~g~~~~D~~~~Ere-------- 50 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNS------GAITE-LGS----------------VDKGTTRTDNTLLERQ-------- 50 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHH------TCCSS-CSS----------------CCCSCCSTTCSTTHHH--------
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHc------CCCcc-ccc----------------cccCCcccCCcHHHHh--------
Confidence 3568999999999999999997321 11111 000 0012234455443321
Q ss_pred cCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHH
Q 012559 115 TGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIK 194 (461)
Q Consensus 115 ~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 194 (461)
-| -++....+.+ ..+...++||||||..++ ..-+.+.++-.|. .++|++|..+...+...
T Consensus 51 RG--ITI~s~~~~~---~~~~~~iNlIDTPGH~DF-------------~~Ev~raL~~~Dg-avlVVDa~~GV~~qT~~- 110 (638)
T 3j25_A 51 RG--ITIQTGITSF---QWENTKVNIIDTPGHMDF-------------LAEVYRSLSVLDG-AILLISAKDGVQAQTRI- 110 (638)
T ss_dssp HS--SCSSCCCCCC---BCSSCBCCCEECCCSSST-------------HHHHHHHHTTCSE-EECCEESSCTTCSHHHH-
T ss_pred CC--CcEEeeeEEE---EECCEEEEEEECCCcHHH-------------HHHHHHHHHHhCE-EEEEEeCCCCCcHHHHH-
Confidence 12 1122222221 234477999999999887 4457788888996 55566677777666543
Q ss_pred HHHHhCCCCCceEEEeccCCccCC
Q 012559 195 LAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 195 l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
+.+.+...+.|.|+++||+|....
T Consensus 111 v~~~a~~~~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 111 LFHALRKMGIPTIFFINKIDQNGI 134 (638)
T ss_dssp HHHHHHHHTCSCEECCEECCSSSC
T ss_pred HHHHHHHcCCCeEEEEeccccccC
Confidence 556666668899999999998743
No 198
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.65 E-value=2e-08 Score=112.01 Aligned_cols=67 Identities=21% Similarity=0.256 Sum_probs=44.9
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccH--HHHHHHHHhCCCCCc-eEEEe
Q 012559 134 NVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATS--DAIKLAREVDPTGER-TFGVL 210 (461)
Q Consensus 134 ~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~--~~l~l~~~~d~~~~r-ti~Vl 210 (461)
....++||||||..+. ...+..++..+|.+| +|++++.....+ +.+.+++.. +.| .|+|+
T Consensus 357 ~~~kI~IIDTPGHedF-------------~~~mi~gas~AD~aI-LVVDAtdGv~~QTrEhL~ll~~l---gIP~IIVVI 419 (1289)
T 3avx_A 357 PTRHYAHVDCPGHADY-------------VKNMITGAAQMDGAI-LVVAATDGPMPQTREHILLGRQV---GVPYIIVFL 419 (1289)
T ss_dssp SSCEEEEEECCCHHHH-------------HHHHHHTSCCCSEEE-EEEETTTCSCTTHHHHHHHHHHH---TCSCEEEEE
T ss_pred CCEEEEEEECCChHHH-------------HHHHHHHHhhCCEEE-EEEcCCccCcHHHHHHHHHHHHc---CCCeEEEEE
Confidence 3468999999996542 455667889999655 555555443333 333444443 677 68999
Q ss_pred ccCCccC
Q 012559 211 TKLDLMD 217 (461)
Q Consensus 211 tK~D~~~ 217 (461)
||+|+.+
T Consensus 420 NKiDLv~ 426 (1289)
T 3avx_A 420 NKCDMVD 426 (1289)
T ss_dssp ECCTTCC
T ss_pred eeccccc
Confidence 9999985
No 199
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.65 E-value=2.7e-08 Score=103.00 Aligned_cols=66 Identities=21% Similarity=0.230 Sum_probs=36.9
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcc---------ccHHHHHHHHHhCCCCCc
Q 012559 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI---------ATSDAIKLAREVDPTGER 205 (461)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~---------~~~~~l~l~~~~d~~~~r 205 (461)
...++||||||..+. ...+..++..+|++|| |++++... .+...+.+++. .+.+
T Consensus 120 ~~~~~iiDtPGh~~f-------------~~~~~~~~~~aD~~il-VvDa~~g~~e~sf~~~~qt~e~l~~~~~---~~vp 182 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGY-------------VTNMINGASQADIGVL-VISARRGEFEAGFERGGQTREHAVLART---QGIN 182 (467)
T ss_dssp SEEEEECCCCC------------------------TTSCSEEEE-EEECSTTHHHHTTSTTCCHHHHHHHHHH---TTCS
T ss_pred CeEEEEEECCCcHHH-------------HHHHHhhcccCCEEEE-EEeCCcCccccccCCCCcHHHHHHHHHH---cCCC
Confidence 357899999997654 3345677889996554 45555442 22333334443 3566
Q ss_pred -eEEEeccCCccC
Q 012559 206 -TFGVLTKLDLMD 217 (461)
Q Consensus 206 -ti~VltK~D~~~ 217 (461)
.|+|+||+|+.+
T Consensus 183 ~iivviNK~Dl~~ 195 (467)
T 1r5b_A 183 HLVVVINKMDEPS 195 (467)
T ss_dssp SEEEEEECTTSTT
T ss_pred EEEEEEECccCCC
Confidence 899999999964
No 200
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.62 E-value=3e-08 Score=99.64 Aligned_cols=40 Identities=18% Similarity=0.205 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccE
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPL 73 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~ 73 (461)
.-.+|++||.+|+|||||+|+|+|..+.......||..|.
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~ 60 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPN 60 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCce
Confidence 3468999999999999999999998752222234666664
No 201
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.60 E-value=2.1e-07 Score=91.12 Aligned_cols=72 Identities=13% Similarity=0.253 Sum_probs=44.9
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--HHHHHHH---HHhCCCCCceEEE
Q 012559 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIAT--SDAIKLA---REVDPTGERTFGV 209 (461)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~--~~~l~l~---~~~d~~~~rti~V 209 (461)
...|.+|||||..+... ..+ +...|+++++++|++ .+.+..+.. ..+..+. +...| +.+.++|
T Consensus 45 ~v~LqIWDTAGQErf~~----~~l------~~~~yyr~a~~~IlV-~Ditd~~~~~~~~l~~~l~~~~~~~~-~ipillv 112 (331)
T 3r7w_B 45 LIDLAVMELPGQLNYFE----PSY------DSERLFKSVGALVYV-IDSQDEYINAITNLAMIIEYAYKVNP-SINIEVL 112 (331)
T ss_dssp SSCEEEEECCSCSSSCC----CSH------HHHHHHTTCSEEEEE-CCCSSCTTHHHHHHHHHHHHHHHHCT-TCEEEEE
T ss_pred EEEEEEEECCCchhccc----hhh------hhhhhccCCCEEEEE-EECCchHHHHHHHHHHHHHHHhhcCC-CCcEEEE
Confidence 37899999999877520 000 357899999975554 455433211 1111222 33344 6899999
Q ss_pred eccCCccCC
Q 012559 210 LTKLDLMDK 218 (461)
Q Consensus 210 ltK~D~~~~ 218 (461)
.||+|+.++
T Consensus 113 gNK~DL~~~ 121 (331)
T 3r7w_B 113 IHKVDGLSE 121 (331)
T ss_dssp CCCCCSSCS
T ss_pred EECcccCch
Confidence 999999854
No 202
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.57 E-value=1.2e-07 Score=102.38 Aligned_cols=132 Identities=20% Similarity=0.266 Sum_probs=77.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
....|+++|+.++|||||+++|++........|.+. .+..+.|+.... .
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~-----------------------~g~~~~d~~~~e--------~ 56 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-----------------------EGTTTTDYTPEA--------K 56 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-----------------------GTCCSSCCSHHH--------H
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceec-----------------------CCcccccCCHHH--------H
Confidence 467899999999999999999997543101111110 011222322211 0
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
..| .++..... .+.. ....+.|+||||..+. ...+..+++..|.+++++ ++...+..+..
T Consensus 57 ~~g--iti~~~~~--~~~~-~~~~~nliDTpG~~~f-------------~~~~~~~l~~ad~~ilVv-D~~~g~~~qt~- 116 (665)
T 2dy1_A 57 LHR--TTVRTGVA--PLLF-RGHRVFLLDAPGYGDF-------------VGEIRGALEAADAALVAV-SAEAGVQVGTE- 116 (665)
T ss_dssp HTT--SCCSCEEE--EEEE-TTEEEEEEECCCSGGG-------------HHHHHHHHHHCSEEEEEE-ETTTCSCHHHH-
T ss_pred hcC--CeEEecce--EEee-CCEEEEEEeCCCccch-------------HHHHHHHHhhcCcEEEEE-cCCcccchhHH-
Confidence 012 12222222 2222 2467899999997654 456778888899655555 46554443332
Q ss_pred HHHHHhCCCCCceEEEeccCCcc
Q 012559 194 KLAREVDPTGERTFGVLTKLDLM 216 (461)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~ 216 (461)
.+.+.+...+.+.|+|+||+|+.
T Consensus 117 ~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 117 RAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHHHHTTCCEEEEEECGGGC
T ss_pred HHHHHHHHccCCEEEEecCCchh
Confidence 34444444578999999999997
No 203
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.57 E-value=4.7e-07 Score=93.96 Aligned_cols=78 Identities=23% Similarity=0.310 Sum_probs=46.1
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCc-eEEEeccCC
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGER-TFGVLTKLD 214 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~r-ti~VltK~D 214 (461)
.+++||||||.... .......+..... ++ .++. +++|+++..... +...++.+... .+ +++|+||+|
T Consensus 184 ~DvvIIDTpG~~~~-----~~~l~~el~~~~~-~i-~pd~-vllVvDa~~g~~---~~~~a~~~~~~-~~i~gvVlNK~D 251 (504)
T 2j37_W 184 FEIIIVDTSGRHKQ-----EDSLFEEMLQVAN-AI-QPDN-IVYVMDASIGQA---CEAQAKAFKDK-VDVASVIVTKLD 251 (504)
T ss_dssp CCEEEEEECCCCTT-----CHHHHHHHHHHHH-HH-CCSE-EEEEEETTCCTT---HHHHHHHHHHH-HCCCCEEEECTT
T ss_pred CcEEEEeCCCCccc-----chhHHHHHHHHHh-hh-cCce-EEEEEecccccc---HHHHHHHHHhh-cCceEEEEeCCc
Confidence 68999999998763 1223333333322 33 7775 466666665432 34455555432 45 589999999
Q ss_pred ccCCCccHHHH
Q 012559 215 LMDKGTNALEV 225 (461)
Q Consensus 215 ~~~~~~~~~~~ 225 (461)
....+..+.++
T Consensus 252 ~~~~~g~~l~~ 262 (504)
T 2j37_W 252 GHAKGGGALSA 262 (504)
T ss_dssp SCCCCTHHHHH
T ss_pred cccchHHHHHH
Confidence 98665444443
No 204
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.53 E-value=2.2e-07 Score=89.06 Aligned_cols=82 Identities=22% Similarity=0.398 Sum_probs=48.7
Q ss_pred CCcEEEeCCCCCccccCCCC-ccHHHHHHHHHHHHhc--------------CCCeEEEEEecCCCccccHHHHHHHHHhC
Q 012559 136 VNLTLIDLPGLTKVAVEGQP-ESIVEDIENMVRSYVE--------------KPSCIILAISPANQDIATSDAIKLAREVD 200 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~-~~~~~~i~~~v~~yi~--------------~~~~iIL~V~~a~~d~~~~~~l~l~~~~d 200 (461)
+.++++|+||+......... ..+.+.+......++. .+.+.++++.+....+...+ ..+++.+.
T Consensus 60 ~~ltv~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~ 138 (270)
T 3sop_A 60 MKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLS 138 (270)
T ss_dssp CEEEEECCCC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHH
T ss_pred CCceEEechhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHH
Confidence 57899999999764322111 1223333322222222 13555666666666666665 45777777
Q ss_pred CCCCceEEEeccCCccCCC
Q 012559 201 PTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 201 ~~~~rti~VltK~D~~~~~ 219 (461)
.. .++|.|+||+|.+.+.
T Consensus 139 ~~-~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 139 KV-VNIIPVIAKADTMTLE 156 (270)
T ss_dssp TT-SEEEEEETTGGGSCHH
T ss_pred hc-CcEEEEEeccccCCHH
Confidence 66 8899999999998654
No 205
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.53 E-value=1.3e-06 Score=88.86 Aligned_cols=81 Identities=22% Similarity=0.309 Sum_probs=52.0
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCc
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 215 (461)
.++.||||||.... .......+..+ ..+..++. +++|++|.. .+++...++.+.+....+.+|+||+|.
T Consensus 183 ~DvVIIDTaGrl~~-----d~~lm~el~~i--~~~~~pd~-vlLVvDA~~---gq~a~~~a~~f~~~~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 183 VDIIIVDTAGRHKE-----DKALIEEMKQI--SNVIHPHE-VILVIDGTI---GQQAYNQALAFKEATPIGSIIVTKLDG 251 (443)
T ss_dssp CSEEEEECCCCSSC-----CHHHHHHHHHH--HHHHCCSE-EEEEEEGGG---GGGHHHHHHHHHHSCTTEEEEEECCSS
T ss_pred CCEEEEECCCcccc-----hHHHHHHHHHH--HHhhcCce-EEEEEeCCC---chhHHHHHHHHHhhCCCeEEEEECCCC
Confidence 78999999997653 22333333332 22335674 566667664 345566777777666778899999999
Q ss_pred cCCCccHHHHHh
Q 012559 216 MDKGTNALEVLE 227 (461)
Q Consensus 216 ~~~~~~~~~~l~ 227 (461)
...+..+..+..
T Consensus 252 ~~~gG~~ls~~~ 263 (443)
T 3dm5_A 252 SAKGGGALSAVA 263 (443)
T ss_dssp CSSHHHHHHHHH
T ss_pred cccccHHHHHHH
Confidence 876655555543
No 206
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.49 E-value=2.1e-07 Score=93.05 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=28.9
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEE
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLV 74 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~ 74 (461)
.+|++||.+|+|||||+|+|+|..........+|..|+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~ 40 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNV 40 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccce
Confidence 579999999999999999999875312222346777653
No 207
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.49 E-value=2.8e-07 Score=87.28 Aligned_cols=28 Identities=25% Similarity=0.213 Sum_probs=24.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHhh-----CCCC
Q 012559 33 EALPSVAVVGGQSSGKSSVLESVV-----GRDF 60 (461)
Q Consensus 33 ~~lP~IvVvG~~ssGKSSllnal~-----G~~~ 60 (461)
...+.++++|..|+||||++++|. |.++
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v 44 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKV 44 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCE
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeE
Confidence 367889999999999999999998 6655
No 208
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.42 E-value=1e-06 Score=89.17 Aligned_cols=121 Identities=25% Similarity=0.249 Sum_probs=69.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCccCCCccccccEEEEEeecCCCCcchhhhcCCCCcccChHHHHHHHHHHhhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDR 113 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~d~~~v~~~i~~~~~~ 113 (461)
..+.++++|..|||||||+|+|+|..- |....+....+. .+ +
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~-p~~GsI~~~g~~------------------------------------~t-~ 109 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGN-EEEGAAKTGVVE------------------------------------VT-M 109 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCT-TSTTSCCCCC-----------------------------------------C
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCC-ccCceEEECCee------------------------------------cc-e
Confidence 347999999999999999999999742 322222211110 00 0
Q ss_pred hcCCCCcccCccEEEEEecCCCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHH
Q 012559 114 ITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAI 193 (461)
Q Consensus 114 ~~g~~~~~s~~~i~l~i~~p~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l 193 (461)
..+. ...+..++++++|+||+... .....+.+..+ -+.+.+..+ . .+... ...++ .
T Consensus 110 ----------~~~v--~q~~~~~~ltv~D~~g~~~~-----~~~~~~~L~~~---~L~~~~~~~-~-lS~G~-~~kqr-v 165 (413)
T 1tq4_A 110 ----------ERHP--YKHPNIPNVVFWDLPGIGST-----NFPPDTYLEKM---KFYEYDFFI-I-ISATR-FKKND-I 165 (413)
T ss_dssp ----------CCEE--EECSSCTTEEEEECCCGGGS-----SCCHHHHHHHT---TGGGCSEEE-E-EESSC-CCHHH-H
T ss_pred ----------eEEe--ccccccCCeeehHhhcccch-----HHHHHHHHHHc---CCCccCCeE-E-eCCCC-ccHHH-H
Confidence 0011 11234468999999998642 12233222221 133334333 3 44432 23333 4
Q ss_pred HHHHHhCCCCCceEEEeccCCcc
Q 012559 194 KLAREVDPTGERTFGVLTKLDLM 216 (461)
Q Consensus 194 ~l~~~~d~~~~rti~VltK~D~~ 216 (461)
.+++.+...+.|+++|+||+|.+
T Consensus 166 ~la~aL~~~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 166 DIAKAISMMKKEFYFVRTKVDSD 188 (413)
T ss_dssp HHHHHHHHTTCEEEEEECCHHHH
T ss_pred HHHHHHHhcCCCeEEEEecCccc
Confidence 47777777789999999999975
No 209
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.31 E-value=1.3e-06 Score=92.17 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=24.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDF 60 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~ 60 (461)
..+.|+|||.+|+|||||+|+|+|...
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~ 63 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKK 63 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCC
Confidence 568899999999999999999999864
No 210
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.27 E-value=6.2e-07 Score=86.45 Aligned_cols=27 Identities=15% Similarity=0.345 Sum_probs=24.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDF 60 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~ 60 (461)
...+|++||.+|+|||||+|+|+|...
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCce
Confidence 346899999999999999999999875
No 211
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.26 E-value=7.3e-06 Score=83.39 Aligned_cols=84 Identities=20% Similarity=0.315 Sum_probs=49.3
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCC
Q 012559 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLD 214 (461)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 214 (461)
.+++.||||||....+. .......+..+. ..+ +++. +++|+++... +++...++.+.+.-..+.+|+||+|
T Consensus 179 ~~DvvIIDTaGr~~~~~---d~~lm~el~~i~-~~~-~pd~-vlLVlDa~~g---q~a~~~a~~f~~~~~~~gVIlTKlD 249 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGE---ETKLLEEMKEMY-DVL-KPDD-VILVIDASIG---QKAYDLASRFHQASPIGSVIITKMD 249 (433)
T ss_dssp TCSEEEEEECCCSSSCC---TTHHHHHHHHHH-HHH-CCSE-EEEEEEGGGG---GGGHHHHHHHHHHCSSEEEEEECGG
T ss_pred CCCEEEEECCCCccccC---CHHHHHHHHHHH-Hhh-CCcc-eEEEEeCccc---hHHHHHHHHHhcccCCcEEEEeccc
Confidence 47899999999755111 223333333322 223 4564 4555666542 3444566666544467889999999
Q ss_pred ccCCCccHHHHHh
Q 012559 215 LMDKGTNALEVLE 227 (461)
Q Consensus 215 ~~~~~~~~~~~l~ 227 (461)
....+..+..+..
T Consensus 250 ~~a~~G~als~~~ 262 (433)
T 3kl4_A 250 GTAKGGGALSAVV 262 (433)
T ss_dssp GCSCHHHHHHHHH
T ss_pred ccccchHHHHHHH
Confidence 9866544444443
No 212
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.25 E-value=6.1e-07 Score=90.28 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=31.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCc-cCCCccccccEE
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLP-RGSGIVTRRPLV 74 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP-~~~~~~Tr~p~~ 74 (461)
.-..|++||.+|||||||+|+|+|..+.+ .....||+.|..
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~ 60 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEE 60 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeeccee
Confidence 44689999999999999999999976522 333346777753
No 213
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.21 E-value=2.8e-06 Score=86.74 Aligned_cols=80 Identities=24% Similarity=0.263 Sum_probs=46.4
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHH-HHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCC-CceEEEec
Q 012559 134 NVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVR-SYVEKPSCIILAISPANQDIATSDAIKLAREVDPTG-ERTFGVLT 211 (461)
Q Consensus 134 ~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~-~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~-~rti~Vlt 211 (461)
...++.||||||..... ... +..+.. ..+..++. +++|+++.... ++...++.+.+.- ..+.+|+|
T Consensus 179 ~~~D~vIIDT~G~~~~~-----~~l---~~~l~~i~~~~~~d~-vllVvda~~g~---~~~~~~~~~~~~~~~i~gvVln 246 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEE-----KGL---LEEMKQIKEITNPDE-IILVIDGTIGQ---QAGIQAKAFKEAVGEIGSIIVT 246 (432)
T ss_dssp SSCSEEEEECCCSCSSH-----HHH---HHHHHHTTSSSCCSE-EEEEEEGGGGG---GHHHHHHHHHTTSCSCEEEEEE
T ss_pred hCCCEEEEcCCCCcccc-----HHH---HHHHHHHHHHhcCcc-eeEEeeccccH---HHHHHHHHHhhcccCCeEEEEe
Confidence 34789999999987521 111 222211 12225774 55666665442 4455666665532 33889999
Q ss_pred cCCccCCCccHHHH
Q 012559 212 KLDLMDKGTNALEV 225 (461)
Q Consensus 212 K~D~~~~~~~~~~~ 225 (461)
|+|....+..+..+
T Consensus 247 K~D~~~~~g~~l~~ 260 (432)
T 2v3c_C 247 KLDGSAKGGGALSA 260 (432)
T ss_dssp CSSSCSTTHHHHHH
T ss_pred CCCCccchHHHHHH
Confidence 99987655444444
No 214
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.21 E-value=1.7e-06 Score=79.63 Aligned_cols=25 Identities=28% Similarity=0.512 Sum_probs=23.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
..|.|+++|.+|||||||+++|++.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999975
No 215
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.04 E-value=3.1e-06 Score=80.60 Aligned_cols=25 Identities=28% Similarity=0.554 Sum_probs=23.5
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDF 60 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~ 60 (461)
.+|++||.+|+|||||+|+|+|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 6999999999999999999999865
No 216
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.91 E-value=2.3e-05 Score=76.23 Aligned_cols=87 Identities=17% Similarity=0.199 Sum_probs=49.6
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCc
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 215 (461)
.++.++||+|...... .....+..+-..+++..+.+|+. ++++.|+... ++....++.+......+++++||.|.
T Consensus 185 ~d~~llDt~G~~~~~~-~~~~eLs~~r~~iaRal~~~P~~-~lLvLDa~t~---~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 185 YDLLFVDTAGRLHTKH-NLMEELKKVKRAIAKADPEEPKE-VWLVLDAVTG---QNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp CSEEEECCCCCCTTCH-HHHHHHHHHHHHHHHHCTTCCSE-EEEEEETTBC---THHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred CCEEEecCCCCCCchH-HHHHHHHHHHHHHHHhhcCCCCe-EEEEEcHHHH---HHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 4567999999865321 01122222223344445567774 4556666532 34444555554333468999999998
Q ss_pred cCCCccHHHHHh
Q 012559 216 MDKGTNALEVLE 227 (461)
Q Consensus 216 ~~~~~~~~~~l~ 227 (461)
...+..+..+..
T Consensus 260 ~a~gg~~l~i~~ 271 (304)
T 1rj9_A 260 TAKGGVLIPIVR 271 (304)
T ss_dssp SCCCTTHHHHHH
T ss_pred cccccHHHHHHH
Confidence 776666665544
No 217
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.90 E-value=8.2e-05 Score=76.52 Aligned_cols=83 Identities=19% Similarity=0.245 Sum_probs=49.5
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHH---HHHHhc-CCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEec
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENM---VRSYVE-KPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLT 211 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~---v~~yi~-~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~Vlt 211 (461)
.++.||||+|..... ......+..+ ++.... .++.+ |+|.++.. .++++..++.+...-..+.+|+|
T Consensus 376 ~DvVLIDTaGrl~~~-----~~lm~EL~kiv~iar~l~~~~P~ev-LLvLDatt---Gq~al~~ak~f~~~~~itgvIlT 446 (503)
T 2yhs_A 376 IDVLIADTAGRLQNK-----SHLMEELKKIVRVMKKLDVEAPHEV-MLTIDAST---GQNAVSQAKLFHEAVGLTGITLT 446 (503)
T ss_dssp CSEEEECCCCSCCCH-----HHHHHHHHHHHHHHHTTCTTCSSEE-EEEEEGGG---THHHHHHHHHHHHHTCCSEEEEE
T ss_pred CCEEEEeCCCccchh-----hhHHHHHHHHHHHHHHhccCCCCee-EEEecCcc---cHHHHHHHHHHHhhcCCCEEEEE
Confidence 568899999986531 2222233322 222222 35544 44555553 35566667666544456789999
Q ss_pred cCCccCCCccHHHHHh
Q 012559 212 KLDLMDKGTNALEVLE 227 (461)
Q Consensus 212 K~D~~~~~~~~~~~l~ 227 (461)
|+|....+..+..++.
T Consensus 447 KLD~takgG~~lsi~~ 462 (503)
T 2yhs_A 447 KLDGTAKGGVIFSVAD 462 (503)
T ss_dssp CGGGCSCCTHHHHHHH
T ss_pred cCCCcccccHHHHHHH
Confidence 9998777766776654
No 218
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.89 E-value=2.5e-05 Score=79.70 Aligned_cols=80 Identities=25% Similarity=0.272 Sum_probs=44.7
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCc
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 215 (461)
.++.||||||..... ......+.. ..++..++.++ +|+++... +++...++.+.+.-.-+-+|+||+|.
T Consensus 184 ~D~VIIDTpG~l~~~-----~~l~~~L~~--~~~~~~p~~vl-lVvda~~g---~~~~~~~~~f~~~l~i~gvVlnK~D~ 252 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVD-----EAMMDEIKQ--VHASINPVETL-FVVDAMTG---QDAANTAKAFNEALPLTGVVLTKVDG 252 (433)
T ss_dssp CSEEEEECCCCCTTC-----HHHHHHHHH--HHHHSCCSEEE-EEEETTBC---TTHHHHHHHHHHHSCCCCEEEECTTS
T ss_pred CCEEEEECCCccccc-----HHHHHHHHH--HHHhhcCccee-EEeecchh---HHHHHHHHHHhccCCCeEEEEecCCC
Confidence 689999999976531 122221111 13455677544 45555533 34555666665422224569999998
Q ss_pred cCCCccHHHHH
Q 012559 216 MDKGTNALEVL 226 (461)
Q Consensus 216 ~~~~~~~~~~l 226 (461)
...+..+..+.
T Consensus 253 ~~~~g~~l~i~ 263 (433)
T 2xxa_A 253 DARGGAALSIR 263 (433)
T ss_dssp SSCCTHHHHHH
T ss_pred CccHHHHHHHH
Confidence 76554444443
No 219
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.80 E-value=0.00023 Score=68.92 Aligned_cols=81 Identities=22% Similarity=0.336 Sum_probs=45.5
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCc-eEEEeccCC
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGER-TFGVLTKLD 214 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~r-ti~VltK~D 214 (461)
.++.||||||...... ...+...+..+ ..+..++.++++ +++.. .+++...++.+.+. .+ +.+|+||+|
T Consensus 181 ~D~ViIDTpg~~~~~~---~~~l~~el~~i--~~~~~~d~vllV-vda~~---g~~~~~~~~~~~~~-~~i~gvVlnk~D 250 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGE---EAALLEEMKNI--YEAIKPDEVTLV-IDASI---GQKAYDLASKFNQA-SKIGTIIITKMD 250 (297)
T ss_dssp CSEEEEECCCSCCTTC---HHHHHHHHHHH--HHHHCCSEEEEE-EEGGG---GGGHHHHHHHHHHT-CTTEEEEEECGG
T ss_pred CCEEEEeCCCCccccc---HHHHHHHHHHH--HHHhcCCEEEEE-eeCCc---hHHHHHHHHHHHhh-CCCCEEEEeCCC
Confidence 6899999999876100 11122222222 123356755544 55543 24455566666553 44 778999999
Q ss_pred ccCCCccHHHHH
Q 012559 215 LMDKGTNALEVL 226 (461)
Q Consensus 215 ~~~~~~~~~~~l 226 (461)
....+..+..+.
T Consensus 251 ~~~~~g~~~~~~ 262 (297)
T 1j8m_F 251 GTAKGGGALSAV 262 (297)
T ss_dssp GCTTHHHHHHHH
T ss_pred CCcchHHHHHHH
Confidence 876554444443
No 220
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.79 E-value=5.2e-05 Score=73.72 Aligned_cols=84 Identities=21% Similarity=0.265 Sum_probs=47.6
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHH---Hhc-CCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEe
Q 012559 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRS---YVE-KPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVL 210 (461)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~---yi~-~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~Vl 210 (461)
.+++.|+||||.... ...+.+.+..+..- .+. .++. +++|+++. ..++++..++.+...-.-+-+|+
T Consensus 186 ~~dvvIiDtpg~~~~-----~~~l~~eL~~l~~~i~~~i~~~p~~-vllVlda~---t~~~~l~~a~~~~~~~~i~gvVl 256 (306)
T 1vma_A 186 NKDVVIIDTAGRLHT-----KKNLMEELRKVHRVVKKKIPDAPHE-TLLVIDAT---TGQNGLVQAKIFKEAVNVTGIIL 256 (306)
T ss_dssp TCSEEEEEECCCCSC-----HHHHHHHHHHHHHHGGGTCTTCCSE-EEEEEEGG---GHHHHHHHHHHHHHHSCCCEEEE
T ss_pred CCCEEEEECCCchhh-----HHHHHHHHHHHHHHHhhccCCCCcE-EEEEEECC---CCHHHHHHHHHHHhcCCCCEEEE
Confidence 378999999996332 12233333332221 122 3664 45566665 23445555555543334566789
Q ss_pred ccCCccCCCccHHHHHh
Q 012559 211 TKLDLMDKGTNALEVLE 227 (461)
Q Consensus 211 tK~D~~~~~~~~~~~l~ 227 (461)
||+|....+..+..+..
T Consensus 257 Tk~D~~~~gG~~l~~~~ 273 (306)
T 1vma_A 257 TKLDGTAKGGITLAIAR 273 (306)
T ss_dssp ECGGGCSCTTHHHHHHH
T ss_pred eCCCCccchHHHHHHHH
Confidence 99999877766666554
No 221
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.79 E-value=0.00015 Score=71.21 Aligned_cols=81 Identities=23% Similarity=0.372 Sum_probs=50.0
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCc
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 215 (461)
.++.++||+|.... .......+..+.+.. .+|-.+ +|.|+.. .+++...++.+......+++|+||.|.
T Consensus 212 ~d~vliDtaG~~~~-----~~~l~~eL~~i~ral--~~de~l-lvLDa~t---~~~~~~~~~~~~~~~~it~iilTKlD~ 280 (328)
T 3e70_C 212 IDVVLIDTAGRSET-----NRNLMDEMKKIARVT--KPNLVI-FVGDALA---GNAIVEQARQFNEAVKIDGIILTKLDA 280 (328)
T ss_dssp CSEEEEEECCSCCT-----TTCHHHHHHHHHHHH--CCSEEE-EEEEGGG---TTHHHHHHHHHHHHSCCCEEEEECGGG
T ss_pred chhhHHhhccchhH-----HHHHHHHHHHHHHHh--cCCCCE-EEEecHH---HHHHHHHHHHHHHhcCCCEEEEeCcCC
Confidence 46778999998654 234444444443332 355434 4455442 356666777776545678999999998
Q ss_pred cCCCccHHHHHh
Q 012559 216 MDKGTNALEVLE 227 (461)
Q Consensus 216 ~~~~~~~~~~l~ 227 (461)
...+..+..++.
T Consensus 281 ~a~~G~~l~~~~ 292 (328)
T 3e70_C 281 DARGGAALSISY 292 (328)
T ss_dssp CSCCHHHHHHHH
T ss_pred ccchhHHHHHHH
Confidence 766655555543
No 222
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.74 E-value=2.4e-05 Score=79.90 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
+.-.|+|+|.+++|||+|||.|+|.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 5677999999999999999999974
No 223
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.73 E-value=0.00026 Score=68.45 Aligned_cols=79 Identities=11% Similarity=0.151 Sum_probs=44.7
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhc--CCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccC
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVE--KPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKL 213 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~--~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~ 213 (461)
+++.|+||||..... . ..+..+. ..+. .++. +++|+++..+ ..+..++++.+... ...-+|+||+
T Consensus 183 ~dlvIiDT~G~~~~~-----~---~~~~el~-~~l~~~~~~~-~~lVl~at~~--~~~~~~~~~~~~~l-~~~giVltk~ 249 (296)
T 2px0_A 183 YDHVFVDTAGRNFKD-----P---QYIDELK-ETIPFESSIQ-SFLVLSATAK--YEDMKHIVKRFSSV-PVNQYIFTKI 249 (296)
T ss_dssp SSEEEEECCCCCTTS-----H---HHHHHHH-HHSCCCTTEE-EEEEEETTBC--HHHHHHHTTTTSSS-CCCEEEEECT
T ss_pred CCEEEEeCCCCChhh-----H---HHHHHHH-HHHhhcCCCe-EEEEEECCCC--HHHHHHHHHHHhcC-CCCEEEEeCC
Confidence 789999999987531 1 1122222 2333 2444 4555665533 23444455555432 3355678999
Q ss_pred CccCCCccHHHHHh
Q 012559 214 DLMDKGTNALEVLE 227 (461)
Q Consensus 214 D~~~~~~~~~~~l~ 227 (461)
|....+..+..++.
T Consensus 250 D~~~~~g~~~~~~~ 263 (296)
T 2px0_A 250 DETTSLGSVFNILA 263 (296)
T ss_dssp TTCSCCHHHHHHHH
T ss_pred CcccchhHHHHHHH
Confidence 98876655666554
No 224
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.64 E-value=1.6e-05 Score=73.26 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDF 60 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~ 60 (461)
..+.|+|+|.+|||||||+++|++..+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 569999999999999999999997643
No 225
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.45 E-value=0.0015 Score=63.87 Aligned_cols=84 Identities=24% Similarity=0.338 Sum_probs=47.4
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHH---HHHHhc-CCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEe
Q 012559 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENM---VRSYVE-KPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVL 210 (461)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~---v~~yi~-~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~Vl 210 (461)
..+++||||||..... ......+..+ +...+. .++. +++|+++.. .++++.-++.+.+.-..+=+|+
T Consensus 191 ~yD~VIIDTpg~l~~~-----~~l~~eL~~~~~vi~~~~p~~~d~-vllVl~a~~---~~~~l~~~~~~~~~~~i~GvVl 261 (320)
T 1zu4_A 191 NYDLLLIDTAGRLQNK-----TNLMAELEKMNKIIQQVEKSAPHE-VLLVIDATT---GQNGVIQAEEFSKVADVSGIIL 261 (320)
T ss_dssp TCSEEEEECCCCGGGH-----HHHHHHHHHHHHHHHTTCTTCCSE-EEEEEEGGG---THHHHHHHHHHTTTSCCCEEEE
T ss_pred CCCEEEEcCCCccccc-----HHHHHHHHHHHHHHhcccCCCCce-EEEEEECCC---cHHHHHHHHHHhhcCCCcEEEE
Confidence 3789999999976531 1122222211 111122 3564 455556553 2556666677765444455689
Q ss_pred ccCCccCCCccHHHHHh
Q 012559 211 TKLDLMDKGTNALEVLE 227 (461)
Q Consensus 211 tK~D~~~~~~~~~~~l~ 227 (461)
||+|....+..+..+..
T Consensus 262 tk~d~~~~~g~~~~~~~ 278 (320)
T 1zu4_A 262 TKMDSTSKGGIGLAIKE 278 (320)
T ss_dssp ECGGGCSCTTHHHHHHH
T ss_pred eCCCCCCchhHHHHHHH
Confidence 99998766655555544
No 226
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.35 E-value=0.00091 Score=67.80 Aligned_cols=80 Identities=28% Similarity=0.353 Sum_probs=45.6
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCc
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 215 (461)
.++.||||||..... ......+..+ .. .-.++.++ +|+++.. .+++...++.+.+.-..+-+|+||+|.
T Consensus 181 ~DvVIIDTaG~l~~d-----~~l~~el~~i-~~-~~~pd~vl-LVvDa~t---gq~av~~a~~f~~~l~i~GVIlTKlD~ 249 (425)
T 2ffh_A 181 RDLILVDTAGRLQID-----EPLMGELARL-KE-VLGPDEVL-LVLDAMT---GQEALSVARAFDEKVGVTGLVLTKLDG 249 (425)
T ss_dssp CSEEEEECCCCSSCC-----HHHHHHHHHH-HH-HHCCSEEE-EEEEGGG---TTHHHHHHHHHHHHTCCCEEEEESGGG
T ss_pred CCEEEEcCCCccccc-----HHHHHHHHHh-hh-ccCCceEE-EEEeccc---hHHHHHHHHHHHhcCCceEEEEeCcCC
Confidence 689999999976531 1122222111 12 22567554 4555543 356666677665433346779999998
Q ss_pred cCCCccHHHHH
Q 012559 216 MDKGTNALEVL 226 (461)
Q Consensus 216 ~~~~~~~~~~l 226 (461)
...+..+..+.
T Consensus 250 ~~~~g~alsi~ 260 (425)
T 2ffh_A 250 DARGGAALSAR 260 (425)
T ss_dssp CSSCHHHHHHH
T ss_pred cccHHHHHHHH
Confidence 76554444443
No 227
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.23 E-value=0.0008 Score=66.72 Aligned_cols=86 Identities=23% Similarity=0.278 Sum_probs=48.0
Q ss_pred CcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCcc
Q 012559 137 NLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLM 216 (461)
Q Consensus 137 ~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 216 (461)
+..++|+.|+..... ..+.++..+...+++..+.+|+-++|++. +.... +....++.+......+++++||.|..
T Consensus 242 d~~lldt~Gl~~~~~-~~~~eLSkqr~~iaral~~~P~e~lLvLD-pttgl---D~~~~~~~~~~~~g~t~iiiThlD~~ 316 (359)
T 2og2_A 242 DVVLCDTSGRLHTNY-SLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGL---NMLPQAREFNEVVGITGLILTKLDGS 316 (359)
T ss_dssp SEEEEECCCCSSCCH-HHHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGGG---GGHHHHHHHHHHTCCCEEEEESCTTC
T ss_pred HHHHHHhcCCChhhh-hHHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCCC---CHHHHHHHHHHhcCCeEEEEecCccc
Confidence 457899999865421 01112222233344455567775555555 55333 22223344432235689999999988
Q ss_pred CCCccHHHHHh
Q 012559 217 DKGTNALEVLE 227 (461)
Q Consensus 217 ~~~~~~~~~l~ 227 (461)
..+.....+..
T Consensus 317 ~~gG~~lsi~~ 327 (359)
T 2og2_A 317 ARGGCVVSVVE 327 (359)
T ss_dssp SCTHHHHHHHH
T ss_pred ccccHHHHHHH
Confidence 77766666554
No 228
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.14 E-value=0.00078 Score=65.26 Aligned_cols=86 Identities=23% Similarity=0.268 Sum_probs=46.2
Q ss_pred CcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCcc
Q 012559 137 NLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLM 216 (461)
Q Consensus 137 ~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 216 (461)
+..++|+.|+..... ..+.++..+...+++..+.+|+-++|++. +...+. ....++.+......+++++||.|..
T Consensus 185 d~~lldt~gl~~~~~-~~~~eLSkqr~~iaral~~~P~e~lLvLD-ptsglD---~~~~~~~~~~~~g~t~iiiThlD~~ 259 (302)
T 3b9q_A 185 DVVLCDTSGRLHTNY-SLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLN---MLPQAREFNEVVGITGLILTKLDGS 259 (302)
T ss_dssp SEEEECCCCCSSCCH-HHHHHHHHHHHHHHTTSTTCCSEEEEEEE-GGGGGG---GHHHHHHHHHHTCCCEEEEECCSSC
T ss_pred cchHHhcCCCCcchh-HHHHHHHHHHHHHHHhhccCCCeeEEEEe-CCCCcC---HHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 357899999865320 00111222222233334456775555555 554332 2223344432234689999999988
Q ss_pred CCCccHHHHHh
Q 012559 217 DKGTNALEVLE 227 (461)
Q Consensus 217 ~~~~~~~~~l~ 227 (461)
..+.....+..
T Consensus 260 ~~~g~~l~~~~ 270 (302)
T 3b9q_A 260 ARGGCVVSVVE 270 (302)
T ss_dssp SCTHHHHHHHH
T ss_pred CccChheehHH
Confidence 77666666543
No 229
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.08 E-value=0.0027 Score=61.24 Aligned_cols=81 Identities=26% Similarity=0.334 Sum_probs=45.2
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCc
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDL 215 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 215 (461)
+++.|+||||..... ......+..+.. .+ .++.++ +|+++.. .+++...++.+.+.-..+-+|+||+|.
T Consensus 181 ~D~viiDtpp~~~~d-----~~~~~~l~~~~~-~~-~~~~~~-lv~~~~~---~~~~~~~~~~~~~~~~i~givlnk~d~ 249 (295)
T 1ls1_A 181 RDLILVDTAGRLQID-----EPLMGELARLKE-VL-GPDEVL-LVLDAMT---GQEALSVARAFDEKVGVTGLVLTKLDG 249 (295)
T ss_dssp CCEEEEECCCCSSCC-----HHHHHHHHHHHH-HH-CCSEEE-EEEEGGG---THHHHHHHHHHHHHTCCCEEEEECGGG
T ss_pred CCEEEEeCCCCcccc-----HHHHHHHHHHhh-hc-CCCEEE-EEEeCCC---cHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 789999999976531 112222222222 22 466554 5555543 255555566554432335568999998
Q ss_pred cCCCccHHHHHh
Q 012559 216 MDKGTNALEVLE 227 (461)
Q Consensus 216 ~~~~~~~~~~l~ 227 (461)
...+..+..+..
T Consensus 250 ~~~~g~~~~~~~ 261 (295)
T 1ls1_A 250 DARGGAALSARH 261 (295)
T ss_dssp CSSCHHHHHHHH
T ss_pred CccHHHHHHHHH
Confidence 766655555543
No 230
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.47 E-value=0.0012 Score=64.09 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.1
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~ 59 (461)
-.++++|.+|||||||+|+|+|..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 479999999999999999999974
No 231
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.06 E-value=0.03 Score=49.99 Aligned_cols=63 Identities=16% Similarity=0.139 Sum_probs=36.6
Q ss_pred CCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCC-----CCceEEEe
Q 012559 136 VNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPT-----GERTFGVL 210 (461)
Q Consensus 136 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~-----~~rti~Vl 210 (461)
.+++|||+||... ......+..+|.+|+++.+...+ .....+.+.+... +.+..+|+
T Consensus 76 yD~viiD~~~~~~---------------~~~~~~l~~ad~viiv~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~vv~ 137 (206)
T 4dzz_A 76 YDFAIVDGAGSLS---------------VITSAAVMVSDLVIIPVTPSPLD---FSAAGSVVTVLEAQAYSRKVEARFLI 137 (206)
T ss_dssp SSEEEEECCSSSS---------------HHHHHHHHHCSEEEEEECSCTTT---HHHHHHHHHHHTTSCGGGCCEEEEEE
T ss_pred CCEEEEECCCCCC---------------HHHHHHHHHCCEEEEEecCCHHH---HHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 7899999998653 12334455577655555444332 3333334443322 34567899
Q ss_pred ccCCcc
Q 012559 211 TKLDLM 216 (461)
Q Consensus 211 tK~D~~ 216 (461)
|++|..
T Consensus 138 N~~~~~ 143 (206)
T 4dzz_A 138 TRKIEM 143 (206)
T ss_dssp CSBCTT
T ss_pred eccCCC
Confidence 999954
No 232
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.83 E-value=0.024 Score=57.52 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVV 56 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~ 56 (461)
.+-.|+|+|.+++|||+|+|.|+
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 45678899999999999999775
No 233
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.78 E-value=0.0041 Score=56.20 Aligned_cols=38 Identities=18% Similarity=0.371 Sum_probs=28.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCCCCc----cCCCccccccE
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRDFLP----RGSGIVTRRPL 73 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~~lP----~~~~~~Tr~p~ 73 (461)
.-..|+++|..|||||||++.|.+. +| .....+||.|.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~--~~~~~~~~vs~TTR~p~ 59 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ--NPEKFVYPVPYTTRPPR 59 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH--CTTTEECCCCEECSCCC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh--CCccEEeeecccccCCc
Confidence 3456899999999999999999975 23 23345677763
No 234
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.49 E-value=0.0072 Score=58.31 Aligned_cols=66 Identities=17% Similarity=0.155 Sum_probs=40.7
Q ss_pred CcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcc-ccHHHHHHHHHhCCCCCceEEEeccCCc
Q 012559 137 NLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI-ATSDAIKLAREVDPTGERTFGVLTKLDL 215 (461)
Q Consensus 137 ~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~-~~~~~l~l~~~~d~~~~rti~VltK~D~ 215 (461)
.+.++|| ..+. ..+...|++++|++| +|.+++... .......+...+...+.+.++|+||+|+
T Consensus 64 ~~~iwD~--qer~-------------~~l~~~~~~~ad~vi-lV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL 127 (301)
T 1u0l_A 64 SGVIENV--LHRK-------------NLLTKPHVANVDQVI-LVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDL 127 (301)
T ss_dssp SEEEEEE--CCCS-------------CEETTTTEESCCEEE-EEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGG
T ss_pred eEEEEEE--cccc-------------ceeeccccccCCEEE-EEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHc
Confidence 7899999 2221 334557999999655 555555332 2222222333333347899999999999
Q ss_pred cCC
Q 012559 216 MDK 218 (461)
Q Consensus 216 ~~~ 218 (461)
.++
T Consensus 128 ~~~ 130 (301)
T 1u0l_A 128 YDE 130 (301)
T ss_dssp CCH
T ss_pred CCc
Confidence 754
No 235
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.34 E-value=0.0062 Score=54.48 Aligned_cols=35 Identities=23% Similarity=0.382 Sum_probs=26.4
Q ss_pred EEEECCCCCCHHHHHHHhhCCC--CCccCCCcccccc
Q 012559 38 VAVVGGQSSGKSSVLESVVGRD--FLPRGSGIVTRRP 72 (461)
Q Consensus 38 IvVvG~~ssGKSSllnal~G~~--~lP~~~~~~Tr~p 72 (461)
|||+|+.|||||||++.|+... -|...-..+||.|
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p 40 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP 40 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC
Confidence 8999999999999999998541 1233445677766
No 236
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.24 E-value=0.012 Score=58.12 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=22.0
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~ 59 (461)
-.++++|.+|||||||+|+|+|..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 379999999999999999999974
No 237
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.19 E-value=0.0088 Score=53.00 Aligned_cols=22 Identities=23% Similarity=0.585 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.++++|..+||||||++.|+|.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999986
No 238
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.12 E-value=0.0085 Score=52.95 Aligned_cols=23 Identities=9% Similarity=0.478 Sum_probs=21.3
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
..++++|..|||||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46999999999999999999985
No 239
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.11 E-value=0.03 Score=53.41 Aligned_cols=52 Identities=13% Similarity=0.158 Sum_probs=36.9
Q ss_pred HHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 163 ENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 163 ~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
...+..++.++| +|+.|+||........ ..+.+.+ .+.+.++|+||+|+.++
T Consensus 14 ~~~~~~~l~~aD-vVl~VvDAr~p~~~~~-~~l~~~l--~~kp~ilVlNK~DL~~~ 65 (282)
T 1puj_A 14 RREVTEKLKLID-IVYELVDARIPMSSRN-PMIEDIL--KNKPRIMLLNKADKADA 65 (282)
T ss_dssp HHHHHHHGGGCS-EEEEEEETTSTTTTSC-HHHHHHC--SSSCEEEEEECGGGSCH
T ss_pred HHHHHHHHhhCC-EEEEEEeCCCCCccCC-HHHHHHH--CCCCEEEEEECcccCCH
Confidence 567888999999 5667777776555432 1133333 46899999999999864
No 240
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.09 E-value=0.011 Score=54.77 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.8
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~ 59 (461)
-.++++|..|||||||++.|+|..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 368999999999999999999973
No 241
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.08 E-value=0.0087 Score=53.86 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=21.1
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
..++|+|..|||||||++.|+|.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999985
No 242
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.06 E-value=0.014 Score=55.26 Aligned_cols=22 Identities=36% Similarity=0.637 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.++++|..|||||||++.|+|.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5899999999999999999997
No 243
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.05 E-value=0.012 Score=53.40 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCC
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
-..|+++|..|||||||++.|.+.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 356999999999999999999986
No 244
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.05 E-value=0.015 Score=54.19 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++++|..+||||||++.|.|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999973
No 245
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.00 E-value=0.011 Score=54.39 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++++|..|||||||++.|.|..
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999973
No 246
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.98 E-value=0.0094 Score=53.90 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=21.2
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
-.++++|..|||||||++.|.|.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35889999999999999999996
No 247
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.98 E-value=0.012 Score=53.77 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.++++|..+||||||++.|+|.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999997
No 248
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.98 E-value=0.014 Score=56.16 Aligned_cols=25 Identities=24% Similarity=0.185 Sum_probs=22.5
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDF 60 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~ 60 (461)
-.++++|..|||||||||+|.|..-
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhccccc
Confidence 4789999999999999999999753
No 249
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.94 E-value=0.013 Score=55.12 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++++|..|||||||++.|+|..
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999973
No 250
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.92 E-value=0.012 Score=52.05 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=21.2
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
-.|+++|.+|||||||++.|.|.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35899999999999999999997
No 251
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.89 E-value=0.014 Score=55.58 Aligned_cols=22 Identities=32% Similarity=0.631 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.++++|..|||||||++.|+|.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999997
No 252
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.88 E-value=0.014 Score=53.82 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.++++|..+||||||++.|+|.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999997
No 253
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=94.86 E-value=0.013 Score=57.89 Aligned_cols=70 Identities=19% Similarity=0.278 Sum_probs=48.5
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCcc---------ccHHHHHHHHHhCC----
Q 012559 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDI---------ATSDAIKLAREVDP---- 201 (461)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~---------~~~~~l~l~~~~d~---- 201 (461)
...+.++||+|..+. +.+...|+++++++|+++...+.|- .-.++..+...+..
T Consensus 192 ~~~l~iwDt~GQe~~-------------r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 192 DLHFKMFDVGGQRSE-------------RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp TEEEEEEEECCSGGG-------------GGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CeeEEEEeCCCchhh-------------hHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 467899999997654 5567789999998776665554321 22445555555432
Q ss_pred CCCceEEEeccCCccC
Q 012559 202 TGERTFGVLTKLDLMD 217 (461)
Q Consensus 202 ~~~rti~VltK~D~~~ 217 (461)
.+.++|+|+||+|+..
T Consensus 259 ~~~piiLv~NK~DL~~ 274 (353)
T 1cip_A 259 TDTSIILFLNKKDLFE 274 (353)
T ss_dssp TTSEEEEEEECHHHHH
T ss_pred cCCcEEEEEECcCchh
Confidence 3689999999999863
No 254
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.82 E-value=0.014 Score=55.15 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++++|..|||||||++.|+|..
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999973
No 255
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.82 E-value=0.011 Score=52.87 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=21.3
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
..|+++|..|||||||++.|.|.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 46899999999999999999986
No 256
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.81 E-value=0.015 Score=54.11 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=22.1
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~ 59 (461)
-.++++|..|||||||++.|.|..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 568999999999999999999983
No 257
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.78 E-value=0.011 Score=53.45 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=21.4
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
-.|+|+|.++||||||++.|.|.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999986
No 258
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.73 E-value=0.015 Score=57.66 Aligned_cols=30 Identities=20% Similarity=0.501 Sum_probs=24.6
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI 67 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~ 67 (461)
-.++|+|..|||||||+++|+|. +|...+.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~--~~~~~g~ 205 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE--IPFDQRL 205 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT--SCTTSCE
T ss_pred CEEEEECCCCCCHHHHHHHHHhc--CCCCceE
Confidence 46999999999999999999996 3444444
No 259
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.72 E-value=0.013 Score=57.33 Aligned_cols=30 Identities=33% Similarity=0.625 Sum_probs=24.4
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCCCc
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI 67 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~~~ 67 (461)
-.++|+|..|||||||+++|+|. +|...|.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~--~~~~~g~ 201 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF--IPKEERI 201 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG--SCTTSCE
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--CcCCCcE
Confidence 36899999999999999999997 3444444
No 260
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.71 E-value=0.016 Score=53.85 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++++|..+||||||++.|.|..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999973
No 261
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.70 E-value=0.016 Score=54.11 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++++|..+||||||++.|+|..
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999973
No 262
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.69 E-value=0.015 Score=51.32 Aligned_cols=25 Identities=20% Similarity=0.444 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
..|.++++|..|||||||++.|++.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3689999999999999999999975
No 263
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.65 E-value=0.017 Score=54.27 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++++|..|||||||++.|+|..
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999973
No 264
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.63 E-value=0.013 Score=53.74 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCC
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
--.++|+|+.|||||||++.|+|.
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 357899999999999999999996
No 265
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.63 E-value=0.018 Score=54.44 Aligned_cols=23 Identities=35% Similarity=0.444 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++++|..|||||||++.|.|..
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 58899999999999999999973
No 266
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.60 E-value=0.018 Score=54.07 Aligned_cols=31 Identities=29% Similarity=0.473 Sum_probs=24.7
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCccc
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 69 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~T 69 (461)
.++++|..|||||||++.|+|.. |-.+|.++
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~I~ 63 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH--RPIQGKIE 63 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS--CCSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCcEEE
Confidence 58899999999999999999973 43445443
No 267
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.57 E-value=0.014 Score=51.80 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.++++|..|||||||++.|+|.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999999986
No 268
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.54 E-value=0.019 Score=54.75 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++++|..|||||||++.|+|..
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58899999999999999999973
No 269
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.52 E-value=0.019 Score=54.47 Aligned_cols=22 Identities=36% Similarity=0.410 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.++++|..|||||||++.|+|.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999997
No 270
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.52 E-value=0.014 Score=53.29 Aligned_cols=22 Identities=14% Similarity=0.486 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.++|+|..|||||||++.|.|.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999995
No 271
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.52 E-value=0.019 Score=53.25 Aligned_cols=22 Identities=45% Similarity=0.620 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.++++|..|||||||++.|+|.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999997
No 272
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=94.49 E-value=0.016 Score=57.33 Aligned_cols=70 Identities=14% Similarity=0.242 Sum_probs=43.1
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCc---------cccHHHHHHHHHhCC----
Q 012559 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD---------IATSDAIKLAREVDP---- 201 (461)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d---------~~~~~~l~l~~~~d~---- 201 (461)
...+.++||||..+. +.+...|+.+++++|+++...+.| -.-.++..+...+..
T Consensus 200 ~~~l~i~Dt~Gq~~~-------------r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~ 266 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSE-------------RKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266 (362)
T ss_dssp TEEEEEEEECC--------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CeEEEEEeccchhhh-------------hhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence 467999999997553 566778999999766666554422 122344444444422
Q ss_pred CCCceEEEeccCCccC
Q 012559 202 TGERTFGVLTKLDLMD 217 (461)
Q Consensus 202 ~~~rti~VltK~D~~~ 217 (461)
.+.++|+|+||+|+..
T Consensus 267 ~~~piILv~NK~DL~~ 282 (362)
T 1zcb_A 267 SNVSIILFLNKTDLLE 282 (362)
T ss_dssp TTSEEEEEEECHHHHH
T ss_pred CCCCEEEEEEChhhhh
Confidence 3689999999999863
No 273
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.48 E-value=0.015 Score=60.28 Aligned_cols=31 Identities=32% Similarity=0.558 Sum_probs=25.4
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCccCCCccc
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 69 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~~~~~~T 69 (461)
.|+|+|..||||||++++|+|. +|.+.+++|
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~--i~~~~giit 292 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF--IPPDAKVVS 292 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG--SCTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhh--CCCCCCEEE
Confidence 3899999999999999999996 465555544
No 274
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.45 E-value=0.02 Score=54.10 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++++|..|||||||++.|.|..
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58899999999999999999973
No 275
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=94.44 E-value=0.03 Score=54.83 Aligned_cols=71 Identities=21% Similarity=0.343 Sum_probs=48.0
Q ss_pred CCCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCC---------CccccHHHHHHHHHhC----
Q 012559 134 NVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPAN---------QDIATSDAIKLAREVD---- 200 (461)
Q Consensus 134 ~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~---------~d~~~~~~l~l~~~~d---- 200 (461)
+...+.++||+|..+. +.+...|.++++++|+++.-.. ..-.-.++..+...+.
T Consensus 159 ~~v~l~iwDtaGQe~~-------------R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~ 225 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSE-------------RKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF 225 (340)
T ss_dssp SSCEEEEEECCSCHHH-------------HHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGG
T ss_pred eeeeeccccCCCcccc-------------cccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhc
Confidence 4478999999996543 7788999999998776665431 1112233444444432
Q ss_pred CCCCceEEEeccCCccC
Q 012559 201 PTGERTFGVLTKLDLMD 217 (461)
Q Consensus 201 ~~~~rti~VltK~D~~~ 217 (461)
..+.++|+|+||+|+..
T Consensus 226 ~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 226 LKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp GTTSEEEEEEECHHHHH
T ss_pred cCCCeEEEEEECchhhh
Confidence 24679999999999974
No 276
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.35 E-value=0.021 Score=49.89 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.1
Q ss_pred CEEEEECCCCCCHHHHHHHhhC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G 57 (461)
-.++++|..|||||||++.+.+
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHcc
Confidence 3589999999999999998654
No 277
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.29 E-value=0.023 Score=53.14 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++++|..|||||||++.|+|..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58899999999999999999983
No 278
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.15 E-value=0.026 Score=53.22 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++++|..+||||||++.|+|..
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58999999999999999999973
No 279
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.12 E-value=0.026 Score=52.77 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.++++|..|||||||++.|+|.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999997
No 280
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.10 E-value=0.021 Score=49.60 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
..|+++|.++||||||.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999875
No 281
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.10 E-value=0.021 Score=49.55 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.++++|+.+||||||++.|+|.
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999999997
No 282
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.07 E-value=0.019 Score=51.67 Aligned_cols=23 Identities=22% Similarity=0.514 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
-.|+++|..+||||||++.|.|.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999985
No 283
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.04 E-value=0.028 Score=53.16 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.++++|..+||||||++.|+|.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999997
No 284
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.99 E-value=0.021 Score=53.78 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=21.3
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
-.++|+|..||||||++++|+|.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 46899999999999999999996
No 285
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.97 E-value=0.023 Score=50.78 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=21.4
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
..|+++|.+||||||+++.|.+.
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999987
No 286
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.92 E-value=0.012 Score=51.80 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=21.7
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
+.|+|+|..+||||||++.|.|.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999999986
No 287
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=93.90 E-value=0.027 Score=54.88 Aligned_cols=70 Identities=16% Similarity=0.236 Sum_probs=47.5
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecC---------CCccccHHHHHHHHHhCC----
Q 012559 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPA---------NQDIATSDAIKLAREVDP---- 201 (461)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a---------~~d~~~~~~l~l~~~~d~---- 201 (461)
...+.++||.|..+. +.+...|.++++++|+++.-. +..-.-.++..+.+.+..
T Consensus 166 ~v~l~iwDtgGQe~~-------------R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~ 232 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSE-------------RRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 232 (327)
T ss_dssp TEEEEEEEECCSHHH-------------HTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred ceeeEEEEcCCchhH-------------HHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence 467899999996543 667788999999877766321 111122445555555432
Q ss_pred CCCceEEEeccCCccC
Q 012559 202 TGERTFGVLTKLDLMD 217 (461)
Q Consensus 202 ~~~rti~VltK~D~~~ 217 (461)
.+.++|+|+||+|+.+
T Consensus 233 ~~~~iiL~~NK~DL~~ 248 (327)
T 3ohm_A 233 QNSSVILFLNKKDLLE 248 (327)
T ss_dssp TTCEEEEEEECHHHHH
T ss_pred CCceEEEEEECchhhh
Confidence 3678999999999874
No 288
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.89 E-value=0.021 Score=55.20 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.++|||..|||||||++.|+|.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 6899999999999999999997
No 289
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.89 E-value=0.024 Score=54.77 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=21.3
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
-.++|+|..|||||||++.|.|.
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhh
Confidence 46899999999999999999985
No 290
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.86 E-value=0.021 Score=51.94 Aligned_cols=23 Identities=22% Similarity=0.161 Sum_probs=21.4
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
-.++++|..+||||||++.|+|.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999997
No 291
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.84 E-value=0.034 Score=47.87 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=19.0
Q ss_pred CEEEEECCCCCCHHHHHHHh
Q 012559 36 PSVAVVGGQSSGKSSVLESV 55 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal 55 (461)
+.|+++|.+||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999999
No 292
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.81 E-value=0.035 Score=51.46 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=23.1
Q ss_pred CCEEEEECCCCCCHHHHHHHhh---CCCC
Q 012559 35 LPSVAVVGGQSSGKSSVLESVV---GRDF 60 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~---G~~~ 60 (461)
...|+|+|.++|||||+++.|. |...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 3589999999999999999999 8743
No 293
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.77 E-value=0.042 Score=52.89 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
-.++++|..|||||||+|+|+ .
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~ 187 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-G 187 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-S
T ss_pred cEEEEECCCCCCHHHHHHHHH-H
Confidence 468999999999999999999 5
No 294
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.73 E-value=0.026 Score=50.55 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.8
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
..|+++|.++||||||++.|.|.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999864
No 295
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.73 E-value=0.068 Score=51.14 Aligned_cols=25 Identities=24% Similarity=0.147 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
....|+|+|.++||||||.+.|.+.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456999999999999999999875
No 296
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.68 E-value=0.036 Score=52.31 Aligned_cols=25 Identities=32% Similarity=0.591 Sum_probs=22.6
Q ss_pred EEEEECCCCCCHHHHHHHhhCCCCCcc
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRDFLPR 63 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~~lP~ 63 (461)
.++++|..+||||||++.|+|.. |.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~--p~ 56 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL--PY 56 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS--CC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CC
Confidence 68899999999999999999984 64
No 297
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.67 E-value=0.027 Score=49.78 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHhhC
Q 012559 37 SVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G 57 (461)
.|+++|.++||||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999986
No 298
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=93.65 E-value=0.046 Score=54.77 Aligned_cols=70 Identities=17% Similarity=0.212 Sum_probs=47.6
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCC---------ccccHHHHHHHHHhC----C
Q 012559 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQ---------DIATSDAIKLAREVD----P 201 (461)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~---------d~~~~~~l~l~~~~d----~ 201 (461)
...+.++||+|..+. +.+...|+++++++|+++.-.+. .-.-.++..+...+. .
T Consensus 216 ~v~l~iwDtaGQe~~-------------r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~ 282 (402)
T 1azs_C 216 KVNFHMFDVGGQRDE-------------RRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL 282 (402)
T ss_dssp TEEEEEEEECCSGGG-------------GGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTC
T ss_pred Cccceecccchhhhh-------------hhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccC
Confidence 367899999997654 56778899999987766654441 112234444555442 2
Q ss_pred CCCceEEEeccCCccC
Q 012559 202 TGERTFGVLTKLDLMD 217 (461)
Q Consensus 202 ~~~rti~VltK~D~~~ 217 (461)
.+.++|+|+||+|+..
T Consensus 283 ~~~piiLvgNK~DL~~ 298 (402)
T 1azs_C 283 RTISVILFLNKQDLLA 298 (402)
T ss_dssp SSCCEEEEEECHHHHH
T ss_pred CCCeEEEEEEChhhhh
Confidence 3678999999999863
No 299
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.49 E-value=0.046 Score=47.95 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
..|.|+++|.+|||||||++.|.+.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4689999999999999999999864
No 300
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.41 E-value=0.03 Score=54.20 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=21.1
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
-.|+|+|..|||||||++.|.|.
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHhh
Confidence 35889999999999999999996
No 301
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.38 E-value=0.033 Score=49.78 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.++++|..+||||||++.|.|.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4899999999999999999986
No 302
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.38 E-value=0.045 Score=47.19 Aligned_cols=22 Identities=18% Similarity=0.154 Sum_probs=19.8
Q ss_pred CEEEEECCCCCCHHHHHHHhhC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G 57 (461)
..|+++|.+||||||+.+.|..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999974
No 303
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.37 E-value=0.033 Score=48.51 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
..|+++|.++|||||+.+.|.+.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 46999999999999999998753
No 304
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.35 E-value=0.069 Score=46.70 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=21.1
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
..++++|.+|+|||||+.+|.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999999986
No 305
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.28 E-value=0.035 Score=48.65 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
.-...+|+|..+||||||++||.+.
T Consensus 25 ~~g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 25 SKGFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp CSSEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999875
No 306
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.25 E-value=0.024 Score=54.58 Aligned_cols=53 Identities=11% Similarity=0.134 Sum_probs=33.7
Q ss_pred HHHHHhcCCCeEEEEEecCCCc-cccHHHHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 165 MVRSYVEKPSCIILAISPANQD-IATSDAIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 165 ~v~~yi~~~~~iIL~V~~a~~d-~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
+.+.|+.+.|. +++|.+++.. .+.....+++..+...+.+.++|+||+|+.++
T Consensus 72 l~r~~~~naD~-vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~ 125 (302)
T 2yv5_A 72 LIRPKVANVDR-VIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNE 125 (302)
T ss_dssp EETTEEESCCE-EEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCH
T ss_pred HhHHHHHhcCE-EEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCc
Confidence 44468999995 5555666533 33332223333333357899999999999864
No 307
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.23 E-value=0.027 Score=51.62 Aligned_cols=23 Identities=13% Similarity=0.271 Sum_probs=15.7
Q ss_pred CEEEEECCCCCCHHHHHHHhh-CC
Q 012559 36 PSVAVVGGQSSGKSSVLESVV-GR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~-G~ 58 (461)
..|+++|..+||||||++.|. |.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 368999999999999999999 86
No 308
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.21 E-value=0.044 Score=49.23 Aligned_cols=25 Identities=24% Similarity=0.583 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
.-..|+++|.+|||||||.+.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999999864
No 309
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.21 E-value=0.041 Score=52.71 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.++++|..|||||||++.|+|.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5889999999999999999997
No 310
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.18 E-value=0.034 Score=54.93 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=21.4
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
..|+|+|..||||||++++|+|.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 37999999999999999999986
No 311
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.16 E-value=0.041 Score=49.98 Aligned_cols=23 Identities=17% Similarity=0.462 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
..|+++|.+||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999864
No 312
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.05 E-value=0.034 Score=50.49 Aligned_cols=30 Identities=23% Similarity=0.261 Sum_probs=23.8
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCCCCccCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRDFLPRGS 65 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~~lP~~~ 65 (461)
-.++++|.++||||||+..|+|.-..|.+.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~~~~~~~ 55 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMVQLPPEE 55 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGG
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhccccc
Confidence 358999999999999999999853334433
No 313
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.02 E-value=0.062 Score=48.20 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
..|+|+|.++|||||+.+.|.+.
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35889999999999999999986
No 314
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=92.94 E-value=0.035 Score=54.81 Aligned_cols=70 Identities=16% Similarity=0.114 Sum_probs=45.6
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCC---------CccccHHHHHHHHHhCC----
Q 012559 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPAN---------QDIATSDAIKLAREVDP---- 201 (461)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~---------~d~~~~~~l~l~~~~d~---- 201 (461)
...+.++||+|..+. +.+...|+++++++|+++.-.. ..-.-.++..+...+..
T Consensus 182 ~v~l~iwDtaGQe~~-------------r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~ 248 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNE-------------RRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 248 (354)
T ss_dssp --EEEEEEECCSTTG-------------GGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGG
T ss_pred ceeeEEEECCCchhh-------------hHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcccc
Confidence 467999999997654 5667889999998776664331 11122344444444422
Q ss_pred CCCceEEEeccCCccC
Q 012559 202 TGERTFGVLTKLDLMD 217 (461)
Q Consensus 202 ~~~rti~VltK~D~~~ 217 (461)
.+.++|+|.||+|+.+
T Consensus 249 ~~~piiLvgNK~DL~~ 264 (354)
T 2xtz_A 249 EKTSFMLFLNKFDIFE 264 (354)
T ss_dssp SSCEEEEEEECHHHHH
T ss_pred CCCeEEEEEECcchhh
Confidence 3689999999999864
No 315
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.82 E-value=0.044 Score=49.05 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=21.1
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
..|+++|..+||||||.+.|.+.
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999999876
No 316
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.80 E-value=0.28 Score=44.76 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHhhC
Q 012559 37 SVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G 57 (461)
+|+|.|..|+||||+.-+|..
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~ 22 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIK 22 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHH
Confidence 478899999999999888863
No 317
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.78 E-value=0.062 Score=47.69 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.|+++|.+||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999863
No 318
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.76 E-value=0.057 Score=53.20 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++++|..+|||||||+.|.|..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999999984
No 319
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.72 E-value=0.06 Score=53.24 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.8
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~ 59 (461)
-.++++|..|||||||++.|.|..
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHhcCC
Confidence 358999999999999999999974
No 320
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.70 E-value=0.045 Score=50.72 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.|+++|..+||||||++.|.|.
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 321
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.70 E-value=0.092 Score=46.99 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
..|+|+|..+|||||+++.|.+.
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999874
No 322
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.69 E-value=0.059 Score=48.25 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHhhC
Q 012559 37 SVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G 57 (461)
.|+++|.++|||||+.+.|.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 323
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.67 E-value=0.043 Score=51.27 Aligned_cols=26 Identities=19% Similarity=0.424 Sum_probs=23.1
Q ss_pred CCEEEEECCCCCCHHHHHHHhh---CCCC
Q 012559 35 LPSVAVVGGQSSGKSSVLESVV---GRDF 60 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~---G~~~ 60 (461)
-..|+++|..||||||+++.|. |..+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~ 55 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRL 55 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCc
Confidence 3689999999999999999999 8754
No 324
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.62 E-value=0.061 Score=53.08 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++++|..+|||||||+.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 58999999999999999999974
No 325
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.60 E-value=0.063 Score=53.08 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++++|..+|||||||+.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 58999999999999999999974
No 326
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.58 E-value=0.062 Score=46.61 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHhhC
Q 012559 37 SVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G 57 (461)
.|+++|.++|||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 589999999999999999985
No 327
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.57 E-value=0.048 Score=48.74 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHhhC
Q 012559 37 SVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G 57 (461)
.|+|+|.++|||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999987
No 328
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.55 E-value=0.05 Score=48.63 Aligned_cols=24 Identities=42% Similarity=0.450 Sum_probs=20.7
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCC
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
...|+++|.+||||||+.+.|.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998643
No 329
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.55 E-value=0.056 Score=53.30 Aligned_cols=23 Identities=22% Similarity=0.563 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++++|..+|||||||+.|.|..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 58999999999999999999974
No 330
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.53 E-value=0.044 Score=54.15 Aligned_cols=23 Identities=39% Similarity=0.680 Sum_probs=21.6
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
-.++|+|..|||||||++.|.|.
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999997
No 331
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.48 E-value=0.066 Score=53.23 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++++|..+|||||||+.|.|..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 58999999999999999999974
No 332
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.48 E-value=0.034 Score=53.92 Aligned_cols=26 Identities=15% Similarity=0.382 Sum_probs=23.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.+|.++|+|..||||||||+.|+|..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 47899999999999999999999863
No 333
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.46 E-value=0.066 Score=53.16 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++++|..+|||||||+.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 58999999999999999999984
No 334
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.43 E-value=0.068 Score=45.64 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVV 56 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~ 56 (461)
.-+..+|+|+.+|||||+++||.
T Consensus 22 ~~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 22 KEGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 33578999999999999999987
No 335
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.36 E-value=0.07 Score=52.93 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++++|..+|||||||+.|.|..
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 58999999999999999999974
No 336
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.34 E-value=0.051 Score=53.99 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=21.2
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
-.|+|+|..||||||++++|+|.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999995
No 337
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.33 E-value=0.051 Score=54.82 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=21.3
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
-.|+|+|..||||||+|++|+|.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999996
No 338
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=92.29 E-value=0.049 Score=46.55 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCC
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
-..++++|.+++|||+|+++|.|.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999986
No 339
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.16 E-value=0.051 Score=52.39 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=21.1
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
-.|+|+|..+||||||++.|.|.
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999985
No 340
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.01 E-value=0.053 Score=53.30 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++++|..+|||||||+.|.|..
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 68999999999999999999984
No 341
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=91.96 E-value=0.081 Score=45.95 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
.-|+++|.+||||||+.++|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999999864
No 342
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=91.91 E-value=0.072 Score=46.73 Aligned_cols=22 Identities=36% Similarity=0.306 Sum_probs=19.9
Q ss_pred CEEEEECCCCCCHHHHHHHhhC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G 57 (461)
+.|+|+|.+||||||+.+.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999975
No 343
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.91 E-value=0.065 Score=49.17 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=21.2
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
-.|+++|..+|||||+++.|.|.
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 36999999999999999999986
No 344
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.83 E-value=0.085 Score=46.20 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=19.9
Q ss_pred CEEEEECCCCCCHHHHHHHhhC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G 57 (461)
..|+++|.+||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 345
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=91.82 E-value=0.095 Score=46.73 Aligned_cols=22 Identities=14% Similarity=0.235 Sum_probs=20.2
Q ss_pred CEEEEECCCCCCHHHHHHHhhC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G 57 (461)
..|+++|.++|||||+...|.+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
No 346
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.79 E-value=1.3 Score=44.73 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
.-|.+.|+||+|||++..||.+.
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 34999999999999999999864
No 347
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.77 E-value=0.085 Score=48.44 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=20.0
Q ss_pred CEEEEECCCCCCHHHHHHHhhC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G 57 (461)
-.++++|..+||||||+..|++
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 3589999999999999999994
No 348
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.75 E-value=0.099 Score=45.75 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.2
Q ss_pred CCEEEEECCCCCCHHHHHHHhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVV 56 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~ 56 (461)
.+.|+++|.++|||||+...|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999996
No 349
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.61 E-value=0.084 Score=52.73 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=21.4
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
-.++++|..+|||||||+.|.|.
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCChHHHHHHHHhCC
Confidence 36899999999999999999997
No 350
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.60 E-value=0.089 Score=46.07 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=19.2
Q ss_pred CEEEEECCCCCCHHHHHHHhh
Q 012559 36 PSVAVVGGQSSGKSSVLESVV 56 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~ 56 (461)
|.|+++|.++|||||+-..|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 569999999999999998885
No 351
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.60 E-value=0.12 Score=45.46 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
.-+.|+++|.++|||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4467999999999999999998654
No 352
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=91.58 E-value=0.086 Score=52.16 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G 57 (461)
..+-.+|+|..||||||++++|+.
T Consensus 22 ~~g~~~i~G~NGaGKTTll~ai~~ 45 (365)
T 3qf7_A 22 QSGITVVEGPNGAGKSSLFEAISF 45 (365)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 445788999999999999999983
No 353
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.57 E-value=0.063 Score=54.90 Aligned_cols=26 Identities=31% Similarity=0.556 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.=+.++|+|..+||||||++.|+|.-
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 34789999999999999999999973
No 354
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.47 E-value=0.099 Score=45.43 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.2
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
+.|+++|.++|||||+...|...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999999743
No 355
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=91.42 E-value=0.13 Score=50.86 Aligned_cols=55 Identities=13% Similarity=0.080 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 161 DIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 161 ~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
.++++...|.+..+ +++.|+|+.... ..+...++++.. +.+.++|+||+|+.++.
T Consensus 58 ~f~~~l~~i~~~~~-~il~VvD~~d~~--~~~~~~l~~~~~-~~p~ilV~NK~DL~~~~ 112 (368)
T 3h2y_A 58 DFLRILNGIGKSDA-LVVKIVDIFDFN--GSWLPGLHRFVG-NNKVLLVGNKADLIPKS 112 (368)
T ss_dssp HHHHHHHHHHHSCC-EEEEEEETTSHH--HHCCTTHHHHSS-SSCEEEEEECGGGSCTT
T ss_pred HHHHHHHHHhccCc-EEEEEEECCCCc--ccHHHHHHHHhC-CCcEEEEEEChhcCCcc
Confidence 34677778887777 566777775321 222222333333 68999999999998654
No 356
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.41 E-value=0.1 Score=45.67 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=19.3
Q ss_pred CEEEEECCCCCCHHHHHHHhh
Q 012559 36 PSVAVVGGQSSGKSSVLESVV 56 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~ 56 (461)
..|+++|.++|||||+.+.|.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 369999999999999999997
No 357
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.38 E-value=0.079 Score=51.43 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.|+|+|.+|||||||++.|.+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999875
No 358
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.38 E-value=0.058 Score=53.16 Aligned_cols=23 Identities=22% Similarity=0.560 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++++|..+|||||||+.|.|..
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999999974
No 359
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.36 E-value=0.13 Score=53.75 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++++|..|||||||++.|.|.-
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 360
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.32 E-value=0.14 Score=53.44 Aligned_cols=23 Identities=22% Similarity=0.539 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++|+|..+||||||++.|+|..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999973
No 361
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.28 E-value=0.11 Score=46.45 Aligned_cols=23 Identities=30% Similarity=0.195 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
..|++.|.++|||||+.+.|...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999999753
No 362
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.24 E-value=0.093 Score=46.11 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=19.6
Q ss_pred CEEEEECCCCCCHHHHHHHhhC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G 57 (461)
..|+++|.++|||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 363
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.18 E-value=0.12 Score=45.11 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=20.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVV 56 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~ 56 (461)
..+.|+++|.++|||||+.+.|.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 45679999999999999999997
No 364
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.17 E-value=0.12 Score=45.51 Aligned_cols=24 Identities=38% Similarity=0.511 Sum_probs=20.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G 57 (461)
..+.|+++|.++|||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999863
No 365
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.14 E-value=0.12 Score=45.83 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
..|+++|.++|||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999864
No 366
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.10 E-value=0.14 Score=53.47 Aligned_cols=23 Identities=22% Similarity=0.432 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++++|..+||||||++.|+|..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999973
No 367
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.09 E-value=0.12 Score=46.54 Aligned_cols=20 Identities=20% Similarity=0.501 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHhh
Q 012559 37 SVAVVGGQSSGKSSVLESVV 56 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~ 56 (461)
.|+|+|.++|||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999995
No 368
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=90.86 E-value=0.16 Score=53.71 Aligned_cols=23 Identities=22% Similarity=0.539 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++++|..|||||||++.|+|..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999973
No 369
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=90.85 E-value=0.14 Score=54.05 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.++++|+.|||||||++.|.|.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999997
No 370
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.84 E-value=0.12 Score=45.50 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHhhC
Q 012559 37 SVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G 57 (461)
.|++.|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999974
No 371
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=90.80 E-value=0.13 Score=44.33 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=19.6
Q ss_pred CEEEEECCCCCCHHHHHHHhhC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G 57 (461)
+.|+++|.++|||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999863
No 372
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.78 E-value=0.1 Score=45.47 Aligned_cols=23 Identities=22% Similarity=0.210 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
..|+++|..+|||||+.+.|.+.
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999864
No 373
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.77 E-value=0.13 Score=46.26 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHhhC
Q 012559 37 SVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G 57 (461)
.|+++|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999963
No 374
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=90.62 E-value=0.1 Score=49.34 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHhhCC
Q 012559 38 VAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 38 IvVvG~~ssGKSSllnal~G~ 58 (461)
++++|.+|+|||||+++|.|.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999985
No 375
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=90.61 E-value=0.1 Score=53.52 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=21.5
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
-.++++|..+||||||++.|.|.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 56899999999999999999996
No 376
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=90.59 E-value=0.97 Score=50.14 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHh
Q 012559 37 SVAVVGGQSSGKSSVLESV 55 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal 55 (461)
.++++|+.++||||+|+.+
T Consensus 664 i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999
No 377
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=90.59 E-value=0.14 Score=44.98 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=19.4
Q ss_pred CEEEEECCCCCCHHHHHHHhhC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G 57 (461)
..|+++|.++|||||+.+.|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998863
No 378
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=90.59 E-value=0.11 Score=48.23 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHhhCC
Q 012559 38 VAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 38 IvVvG~~ssGKSSllnal~G~ 58 (461)
++++|.+|+|||||+++|.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999985
No 379
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.55 E-value=0.13 Score=45.04 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHhhC
Q 012559 37 SVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G 57 (461)
.|++.|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999964
No 380
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=90.54 E-value=0.17 Score=53.63 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++++|..|||||||++.|.|.-
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 68999999999999999999973
No 381
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.53 E-value=0.16 Score=43.61 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHhhC
Q 012559 37 SVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G 57 (461)
.|++.|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999854
No 382
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=90.52 E-value=0.11 Score=54.79 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.++++|+.|||||||++.|.|.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6899999999999999999997
No 383
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=90.52 E-value=0.2 Score=53.06 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++++|..|||||||++.|+|..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 68999999999999999999973
No 384
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=90.50 E-value=0.33 Score=41.84 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCC
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
.+.++++|.+|+|||+++.++...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 466899999999999999999764
No 385
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=90.50 E-value=0.12 Score=54.44 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.++++|+.|||||||++.|.|.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 5899999999999999999997
No 386
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=90.46 E-value=0.14 Score=45.21 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.1
Q ss_pred CEEEEECCCCCCHHHHHHHhhC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G 57 (461)
+.|+++|.++|||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 387
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=90.44 E-value=0.14 Score=44.89 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCC
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
-..|+++|.++|||||+.+.|.+.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 356999999999999999999864
No 388
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.39 E-value=0.11 Score=46.84 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.++++|.++||||||+..|++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999965
No 389
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.30 E-value=0.12 Score=46.10 Aligned_cols=23 Identities=26% Similarity=0.177 Sum_probs=20.5
Q ss_pred CCEEEEECCCCCCHHHHHHHhhC
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G 57 (461)
-..|+++|.++|||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999974
No 390
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.30 E-value=1.5 Score=44.04 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=21.5
Q ss_pred CCCE-EEEECCCCCCHHHHHHHhhCC
Q 012559 34 ALPS-VAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 34 ~lP~-IvVvG~~ssGKSSllnal~G~ 58 (461)
..|+ |.+.|+||+|||++..|+.+.
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3455 999999999999999999864
No 391
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=90.29 E-value=0.12 Score=54.50 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.+++||..|||||||++.|.|.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999997
No 392
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=90.25 E-value=0.28 Score=48.10 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
..|.|+++|.+++||||+..+|.+.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHH
Confidence 4578999999999999999988864
No 393
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=90.21 E-value=0.12 Score=54.70 Aligned_cols=22 Identities=41% Similarity=0.513 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.++++|..|||||||++.|.|.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999997
No 394
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.17 E-value=0.062 Score=48.22 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.|+|+|.+||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 395
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=90.16 E-value=0.2 Score=44.47 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=20.5
Q ss_pred CCC-EEEEECCCCCCHHHHHHHhhC
Q 012559 34 ALP-SVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 34 ~lP-~IvVvG~~ssGKSSllnal~G 57 (461)
..| .|+++|.++|||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344 799999999999999999864
No 396
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.15 E-value=0.13 Score=45.97 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=20.1
Q ss_pred CEEEEECCCCCCHHHHHHHhhC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G 57 (461)
..|+++|.++|||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999974
No 397
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=90.10 E-value=0.15 Score=47.71 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=20.5
Q ss_pred CCEEEEECCCCCCHHHHHHHhhC
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G 57 (461)
.+.|+++|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 36799999999999999999864
No 398
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=90.05 E-value=0.16 Score=45.73 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVV 56 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~ 56 (461)
..+..+|+|..+|||||+++||.
T Consensus 22 ~~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 22 KEGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHH
Confidence 44578999999999999999986
No 399
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.00 E-value=0.15 Score=53.20 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++++|..|||||||++.|+|.-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57999999999999999999973
No 400
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=89.98 E-value=0.16 Score=46.27 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=20.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G 57 (461)
+...|+++|.++|||||+.+.|..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999973
No 401
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.80 E-value=0.12 Score=49.27 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.++|+|.+|+|||||+..|+|.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 6889999999999999999986
No 402
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=89.78 E-value=0.4 Score=45.56 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=19.5
Q ss_pred CEEEEECCCCCCHHHHHHHhhC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G 57 (461)
.-|+++|.+||||||+...|..
T Consensus 34 ~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999974
No 403
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=89.64 E-value=0.15 Score=44.53 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=19.6
Q ss_pred CEEEEECCCCCCHHHHHHHhhC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G 57 (461)
+.|+++|.++|||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999863
No 404
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=89.61 E-value=0.2 Score=45.28 Aligned_cols=23 Identities=13% Similarity=0.247 Sum_probs=20.3
Q ss_pred CCEEEEECCCCCCHHHHHHHhhC
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G 57 (461)
...|+++|.++|||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999864
No 405
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=89.55 E-value=0.19 Score=44.61 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.2
Q ss_pred CCEEEEECCCCCCHHHHHHHhhC
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G 57 (461)
...|+++|.++|||||+.+.|..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999873
No 406
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=89.54 E-value=0.15 Score=49.57 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCC
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
+..++++|++|+|||||+++|.|.
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 467999999999999999999975
No 407
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=89.53 E-value=0.18 Score=45.51 Aligned_cols=22 Identities=41% Similarity=0.525 Sum_probs=20.1
Q ss_pred CEEEEECCCCCCHHHHHHHhhC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G 57 (461)
..|+|+|..+|||||+.+.|.+
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 408
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=89.51 E-value=0.21 Score=44.41 Aligned_cols=22 Identities=41% Similarity=0.454 Sum_probs=20.0
Q ss_pred CEEEEECCCCCCHHHHHHHhhC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G 57 (461)
|.|++.|.++|||||+.+.|.+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 409
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=89.48 E-value=0.15 Score=48.09 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHhhCC
Q 012559 38 VAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 38 IvVvG~~ssGKSSllnal~G~ 58 (461)
|+++|.+++|||||+++|.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999999985
No 410
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=89.43 E-value=0.15 Score=44.32 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=15.8
Q ss_pred CEEEEECCCCCCHHHHHHHhhC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G 57 (461)
..|+++|.++|||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999863
No 411
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.42 E-value=0.15 Score=53.86 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.++++|+.|||||||++.|.|.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999999997
No 412
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.36 E-value=0.19 Score=45.32 Aligned_cols=21 Identities=14% Similarity=0.390 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHhhC
Q 012559 37 SVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G 57 (461)
.|+++|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 413
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=89.23 E-value=12 Score=36.63 Aligned_cols=110 Identities=15% Similarity=0.052 Sum_probs=54.4
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCc-cccHHHHHHHHHhCCCCCceEEEeccC
Q 012559 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQD-IATSDAIKLAREVDPTGERTFGVLTKL 213 (461)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d-~~~~~~l~l~~~~d~~~~rti~VltK~ 213 (461)
..++++||||.-.. ..+...+..+|.+++++.+.... ....++..+++.+... .+.-+|.|+.
T Consensus 259 ~yD~VIID~p~~~~---------------~~~~~~l~~aD~vivv~~~~~~s~~~l~~~~~~l~~l~~~-~~~~vv~N~~ 322 (373)
T 3fkq_A 259 NYDEIIVDLPFSLE---------------IEKLKLLSKAWRIIVVNDGSQLSNYKFMRAYESVVLLEQN-DDINIIRNMN 322 (373)
T ss_dssp CCSEEEEECCCCCC---------------HHHHHHHTTCSEEEEEECCCHHHHHHHHHHHHHHHHHTTS-TTCCCGGGEE
T ss_pred CCCEEEEeCCCCCC---------------HHHHHHHHHCCEEEEEecCCchHHHHHHHHHHHHHHhccc-CCcEEEehhH
Confidence 47899999985332 23455677888666555443322 1135566667777653 3333334444
Q ss_pred CccCCCccHHHHHhCcccccCCCeeEEEeCChhhhcccccHHHHHHHHHhhhc
Q 012559 214 DLMDKGTNALEVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARRKEREYFE 266 (461)
Q Consensus 214 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~E~~ff~ 266 (461)
+....-.. ............+.+.++.+..- ..........+..+|.
T Consensus 323 ~v~~~~~~---~~~~fl~~~~l~~lG~IP~D~~~---~~~~ii~~l~~~~~f~ 369 (373)
T 3fkq_A 323 MIYNKFSN---KNSEMLSNISIKTIGGAPRYEHA---TVRQIIEALTKMEFFE 369 (373)
T ss_dssp EEECSCCT---TTCCCCCSCSCEEEEECCCCTTC---CHHHHHHHHHTCTTHH
T ss_pred HHHHHHHH---HHHHHhhcCCccceeecCCCCCc---CHHHHHHHHHHHHHHH
Confidence 33322211 11100113456677777766431 1222233444555554
No 414
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.22 E-value=0.16 Score=47.48 Aligned_cols=23 Identities=30% Similarity=0.264 Sum_probs=20.7
Q ss_pred CCEEEEECCCCCCHHHHHHHhhC
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G 57 (461)
-..|+++|.++|||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999965
No 415
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=89.21 E-value=0.36 Score=47.67 Aligned_cols=53 Identities=19% Similarity=0.098 Sum_probs=32.8
Q ss_pred HHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 163 ENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 163 ~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
+++...|....+ +++.|+|+..... +-...+.+.+. +.+.++|+||+|+.++.
T Consensus 62 ~~~L~~~~~~~~-lil~VvD~~d~~~-s~~~~l~~~l~--~~piilV~NK~DLl~~~ 114 (369)
T 3ec1_A 62 LSMLHRIGESKA-LVVNIVDIFDFNG-SFIPGLPRFAA--DNPILLVGNKADLLPRS 114 (369)
T ss_dssp HHHHHHHHHHCC-EEEEEEETTCSGG-GCCSSHHHHCT--TSCEEEEEECGGGSCTT
T ss_pred HHHHHHhhccCc-EEEEEEECCCCCC-chhhHHHHHhC--CCCEEEEEEChhcCCCc
Confidence 566677777766 5666666654221 11111233332 68999999999998754
No 416
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=89.07 E-value=0.2 Score=44.37 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCC
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
...|+|+|.++|||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 457999999999999999999854
No 417
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.03 E-value=0.18 Score=45.67 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.3
Q ss_pred CCEEEEECCCCCCHHHHHHHhhC
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G 57 (461)
...|+|+|.++|||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999863
No 418
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=88.83 E-value=0.39 Score=44.51 Aligned_cols=23 Identities=13% Similarity=0.218 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
..|+++|.+||||||+...|.+.
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999764
No 419
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=88.73 E-value=0.15 Score=47.97 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=34.6
Q ss_pred HHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceEEEeccCCccCC
Q 012559 163 ENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDK 218 (461)
Q Consensus 163 ~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 218 (461)
.+.+...+.+.| +|+.|++|..+....... +. +- +.+.++|+||+|+.++
T Consensus 12 ~~~~~~~l~~~D-~vl~VvDar~P~~~~~~~-l~--ll--~k~~iivlNK~DL~~~ 61 (262)
T 3cnl_A 12 KRQIKDLLRLVN-TVVEVRDARAPFATSAYG-VD--FS--RKETIILLNKVDIADE 61 (262)
T ss_dssp THHHHHHHTTCS-EEEEEEETTSTTTTSCTT-SC--CT--TSEEEEEEECGGGSCH
T ss_pred HHHHHHHHhhCC-EEEEEeeCCCCCcCcChH-HH--hc--CCCcEEEEECccCCCH
Confidence 456788899999 566777777554442211 11 22 7899999999999865
No 420
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=88.70 E-value=0.43 Score=46.70 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
..|.++|.|.+|+||||+++++.+.
T Consensus 43 ~~~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 43 HYPRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999875
No 421
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=88.70 E-value=0.24 Score=45.01 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHhhC
Q 012559 37 SVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G 57 (461)
.|+++|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999863
No 422
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=88.59 E-value=0.29 Score=51.76 Aligned_cols=22 Identities=18% Similarity=0.514 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHhhCCC
Q 012559 38 VAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 38 IvVvG~~ssGKSSllnal~G~~ 59 (461)
++++|..|||||||++.|+|..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7999999999999999999974
No 423
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=88.58 E-value=0.25 Score=42.48 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.4
Q ss_pred CCEEEEECCCCCCHHHHHHHhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVV 56 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~ 56 (461)
...|++.|.++|||||+...|.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999985
No 424
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=88.56 E-value=0.18 Score=50.07 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
-.|+++|.+|+|||||+.+|.|.
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 37899999999999999999974
No 425
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=88.52 E-value=0.19 Score=45.16 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
..|+++|.++|||||+...|.+.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999999864
No 426
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=88.48 E-value=0.19 Score=44.98 Aligned_cols=22 Identities=23% Similarity=0.122 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHhhC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G 57 (461)
-.++++|.+++|||||+..|++
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999998
No 427
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=88.47 E-value=0.23 Score=46.21 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHhhC
Q 012559 37 SVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G 57 (461)
-|+|+|.++||||||...|.+
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999975
No 428
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=88.41 E-value=0.21 Score=48.67 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G 57 (461)
+.+-.+++|+.+|||||+++||+.
T Consensus 22 ~~~~~~i~G~NGsGKS~lleAi~~ 45 (339)
T 3qkt_A 22 KEGINLIIGQNGSGKSSLLDAILV 45 (339)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 445679999999999999999853
No 429
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=88.33 E-value=0.2 Score=45.63 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
-.++++|.+++|||||+..|++.
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999999984
No 430
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=88.26 E-value=0.49 Score=42.76 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHhhC
Q 012559 37 SVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G 57 (461)
.+++.|++|+|||++..+|..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999988888764
No 431
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=88.07 E-value=0.26 Score=43.96 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=20.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G 57 (461)
.-..|+++|..+|||||+.+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998864
No 432
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=88.04 E-value=0.28 Score=45.33 Aligned_cols=23 Identities=17% Similarity=0.131 Sum_probs=20.3
Q ss_pred CCEEEEECCCCCCHHHHHHHhhC
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G 57 (461)
...|++.|.++|||||+...|..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999963
No 433
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=87.98 E-value=0.3 Score=44.65 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=20.4
Q ss_pred CCEEEEECCCCCCHHHHHHHhhC
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G 57 (461)
...|+++|.++|||||+.+.|..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999974
No 434
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=87.91 E-value=0.27 Score=44.40 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.2
Q ss_pred CCEEEEECCCCCCHHHHHHHhhC
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G 57 (461)
-..|+++|.++|||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999853
No 435
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=87.89 E-value=0.2 Score=49.08 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=21.9
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~ 59 (461)
-.++++|..+||||||++.|+|..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999999973
No 436
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.80 E-value=2 Score=42.86 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
-|.+.|+||+|||++..|+.+.
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEeCCCCCCHHHHHHHHHHh
Confidence 4999999999999999999864
No 437
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=87.70 E-value=0.22 Score=49.08 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=22.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHhhCC
Q 012559 33 EALPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 33 ~~lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
++-...+++|+.++||||++++|.+.
T Consensus 24 ~~~g~~~i~G~nG~GKttll~ai~~~ 49 (359)
T 2o5v_A 24 FPEGVTGIYGENGAGKTNLLEAAYLA 49 (359)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred EcCCeEEEECCCCCChhHHHHHHHHh
Confidence 34457899999999999999999864
No 438
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.67 E-value=0.27 Score=47.52 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
+....+++|..+||||||++||...
T Consensus 23 ~~g~~~i~G~NGsGKS~ll~ai~~l 47 (322)
T 1e69_A 23 SDRVTAIVGPNGSGKSNIIDAIKWV 47 (322)
T ss_dssp CSSEEEEECCTTTCSTHHHHHHHHT
T ss_pred CCCcEEEECCCCCcHHHHHHHHHHH
Confidence 4458999999999999999999853
No 439
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=87.57 E-value=0.29 Score=44.86 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
..|++.|.++|||||+++.|...
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999999875
No 440
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=87.56 E-value=0.53 Score=40.44 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=21.0
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCC
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
.+.|+++|.+|+|||+++.++...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999998754
No 441
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=87.49 E-value=0.25 Score=49.79 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.7
Q ss_pred CEEEEECCCCCCHHHHHHHhhCCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~~ 59 (461)
...+|+|..++|||||+++|.+.-
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhh
Confidence 478999999999999999999863
No 442
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=87.40 E-value=0.088 Score=52.70 Aligned_cols=26 Identities=19% Similarity=0.124 Sum_probs=22.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHhhCC
Q 012559 33 EALPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 33 ~~lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
+.-..++++|..+|||||||++|.+.
T Consensus 58 ~~~G~~~lvG~NGaGKStLl~aI~~l 83 (415)
T 4aby_A 58 LGGGFCAFTGETGAGKSIIVDALGLL 83 (415)
T ss_dssp CCSSEEEEEESHHHHHHHHTHHHHHH
T ss_pred cCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 34458999999999999999999775
No 443
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=87.40 E-value=0.61 Score=44.84 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=34.3
Q ss_pred HHHHhcCCCeEEEEEecCCC-ccccHHHHHHHHHhCCCCCceEEEeccCCccCCC
Q 012559 166 VRSYVEKPSCIILAISPANQ-DIATSDAIKLAREVDPTGERTFGVLTKLDLMDKG 219 (461)
Q Consensus 166 v~~yi~~~~~iIL~V~~a~~-d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 219 (461)
++..+.+.|. ++.|+++.. ++......+++..+...+.+.++|+||+|+.++.
T Consensus 80 ~R~~~anvD~-v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~ 133 (307)
T 1t9h_A 80 IRPPICNVDQ-AVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQ 133 (307)
T ss_dssp TTTTEECCCE-EEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCH
T ss_pred hHHHHHhCCE-EEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchh
Confidence 3346888884 666667764 4443332333333345688999999999999763
No 444
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.39 E-value=0.23 Score=48.28 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
+.|.+.++|.+|+||||++.+|.|.
T Consensus 35 ~~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 35 DLPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999984
No 445
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=87.33 E-value=0.57 Score=41.37 Aligned_cols=24 Identities=17% Similarity=0.374 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCC
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
.|.+++.|.+|+|||+++.++...
T Consensus 38 ~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 38 IPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 355999999999999999999754
No 446
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=87.29 E-value=0.23 Score=50.37 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=21.4
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
-.++++|..+||||||++.|.|.
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 46899999999999999999997
No 447
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=87.18 E-value=11 Score=36.05 Aligned_cols=25 Identities=4% Similarity=0.009 Sum_probs=20.8
Q ss_pred CCCE-EEEECCCCCCHHHHHHHhhCC
Q 012559 34 ALPS-VAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 34 ~lP~-IvVvG~~ssGKSSllnal~G~ 58 (461)
++|. +.+.|.+|+|||++..++...
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~ 47 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRY 47 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcceeEEEECCCCchHHHHHHHHHHH
Confidence 3555 899999999999999988753
No 448
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=87.14 E-value=0.83 Score=38.24 Aligned_cols=23 Identities=13% Similarity=0.101 Sum_probs=20.2
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
.-|.+.|.+|+|||++..+|...
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCEEEECCCCCCHHHHHHHHHHh
Confidence 34889999999999999999764
No 449
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=87.12 E-value=0.066 Score=49.31 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHhhCCC
Q 012559 38 VAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 38 IvVvG~~ssGKSSllnal~G~~ 59 (461)
++|+|+.+||||||+++|.|..
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 5789999999999999999973
No 450
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=87.00 E-value=0.21 Score=55.61 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++|+|..|||||||++.|+|..
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 451
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.88 E-value=0.41 Score=46.41 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=22.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
.+|.+.+.|++|+||||++.++.+.
T Consensus 45 ~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 45 KLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4577999999999999999999986
No 452
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=86.78 E-value=0.82 Score=42.60 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
..+.+.+.|.+|+|||++..++...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3467999999999999999999753
No 453
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=86.78 E-value=0.96 Score=39.89 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
.-|++.|.+|+|||+|+.+|...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999999864
No 454
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.71 E-value=3.5 Score=41.34 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=21.5
Q ss_pred CCCE-EEEECCCCCCHHHHHHHhhCC
Q 012559 34 ALPS-VAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 34 ~lP~-IvVvG~~ssGKSSllnal~G~ 58 (461)
..|+ |.+.|.||+|||++..||.+.
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCCceECCCCchHHHHHHHHHHH
Confidence 3444 999999999999999999864
No 455
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=86.67 E-value=0.29 Score=48.29 Aligned_cols=23 Identities=43% Similarity=0.625 Sum_probs=20.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHhh
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVV 56 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~ 56 (461)
+.+-.+++|..+|||||+|+||.
T Consensus 24 ~~gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 24 EKGIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 44678999999999999999986
No 456
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=86.61 E-value=1 Score=40.86 Aligned_cols=92 Identities=13% Similarity=0.171 Sum_probs=48.3
Q ss_pred HHHHHHHHhcCCCeEEEEEecCCCcccc-HHHH-HHHHHhCC----CCCceEEEeccC-CccCCC--ccHHHHHhCcccc
Q 012559 162 IENMVRSYVEKPSCIILAISPANQDIAT-SDAI-KLAREVDP----TGERTFGVLTKL-DLMDKG--TNALEVLEGRSYR 232 (461)
Q Consensus 162 i~~~v~~yi~~~~~iIL~V~~a~~d~~~-~~~l-~l~~~~d~----~~~rti~VltK~-D~~~~~--~~~~~~l~~~~~~ 232 (461)
++.+.+.|..+.|+||++|.++..+... .+.+ ++.+.+++ .+.+.++..||- |+...- .++.+.+.-..
T Consensus 115 lRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~-- 192 (227)
T 3l82_B 115 VIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNL-- 192 (227)
T ss_dssp --CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGG--
T ss_pred HHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcC--
Confidence 5889999999999877777666543222 1111 12222332 366777788996 553221 12333333112
Q ss_pred cCCCeeEE--EeCChhhhcccccHH
Q 012559 233 LQHPWVGI--VNRSQADINKNVDMI 255 (461)
Q Consensus 233 l~~g~~~v--~~~s~~~~~~~~~~~ 255 (461)
+...|+.. ...++.++.++++++
T Consensus 193 l~R~W~Iq~csA~TGeGL~EGLdWL 217 (227)
T 3l82_B 193 LNHPWLVQDTEAETLTGFLNGIEWI 217 (227)
T ss_dssp GCSCEEEEEEETTTCTTHHHHHHHH
T ss_pred CCCCEEEEEeECCCCcCHHHHHHHH
Confidence 34677633 344555655555544
No 457
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=86.60 E-value=2.7 Score=46.50 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.++|+|+.++||||+|+.+.+.
T Consensus 675 i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 675 VMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp EEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHHHH
Confidence 6899999999999999998643
No 458
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=86.48 E-value=0.62 Score=43.63 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCC
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
..-+.+.|.+|+|||+|..+|.+.
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 356999999999999999999864
No 459
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=86.43 E-value=0.35 Score=44.78 Aligned_cols=22 Identities=45% Similarity=0.581 Sum_probs=19.7
Q ss_pred CEEEEECCCCCCHHHHHHHhhC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G 57 (461)
..|+|.|.++|||||+-+.|..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 460
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=86.29 E-value=0.36 Score=45.74 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHhhC
Q 012559 37 SVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G 57 (461)
.|+++|.++|||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 461
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=86.21 E-value=0.43 Score=43.07 Aligned_cols=24 Identities=17% Similarity=0.426 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCC
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
.+.+++.|.+|+|||+++.++...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999864
No 462
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=86.21 E-value=0.49 Score=45.62 Aligned_cols=24 Identities=29% Similarity=0.327 Sum_probs=21.0
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCC
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
-+.|+|+|.++||||+|...|...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 367899999999999999999753
No 463
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=86.19 E-value=0.31 Score=45.10 Aligned_cols=23 Identities=26% Similarity=0.523 Sum_probs=20.6
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
+-|+++|.+|+|||+++.+|.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35999999999999999999874
No 464
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=86.19 E-value=0.33 Score=44.40 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=21.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G 57 (461)
.-..|+++|.++|||||+.+.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999985
No 465
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=86.12 E-value=0.56 Score=45.66 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
+.|+|+|..+||||+|...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999865
No 466
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=86.11 E-value=0.44 Score=43.89 Aligned_cols=22 Identities=41% Similarity=0.392 Sum_probs=20.1
Q ss_pred CCEEEEECCCCCCHHHHHHHhh
Q 012559 35 LPSVAVVGGQSSGKSSVLESVV 56 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~ 56 (461)
...|+++|.++|||||+.+.|.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999998
No 467
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=86.00 E-value=0.28 Score=46.19 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHhhC
Q 012559 37 SVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G 57 (461)
.++|+|.+|+|||||+..|++
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999986
No 468
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=85.89 E-value=0.44 Score=42.95 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.|+++|.|+|||+|.-..|+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998853
No 469
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=85.82 E-value=0.63 Score=47.89 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
-|.++|.+++|||+|+++|.|.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999985
No 470
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=85.78 E-value=0.35 Score=45.78 Aligned_cols=20 Identities=35% Similarity=0.434 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHhh
Q 012559 37 SVAVVGGQSSGKSSVLESVV 56 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~ 56 (461)
.|+|+|.++|||||+.+.|.
T Consensus 77 iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 59999999999999999997
No 471
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=85.60 E-value=4.5 Score=37.27 Aligned_cols=88 Identities=10% Similarity=0.131 Sum_probs=49.6
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCC--CCceEEEecc
Q 012559 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPT--GERTFGVLTK 212 (461)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~--~~rti~VltK 212 (461)
..+++|||+|+-.. ......+..+|.+|+++.+....+ .....+.+.+... +.+..+|+|+
T Consensus 144 ~yD~viiD~pp~~~---------------~~~~~~l~~aD~vivv~~~~~~s~--~~~~~~~~~l~~~~~~~~~~vv~N~ 206 (267)
T 3k9g_A 144 KYDYIVIDTNPSLD---------------VTLKNALLCSDYVIIPMTAEKWAV--ESLDLFNFFVRKLNLFLPIFLIITR 206 (267)
T ss_dssp TCSEEEEEECSSCS---------------HHHHHHHTTCSEEEEEEESCTTHH--HHHHHHHHHHHTTTCCCCEEEEEEE
T ss_pred CCCEEEEECcCCcc---------------HHHHHHHHHCCeEEEEeCCChHHH--HHHHHHHHHHHHHhccCCEEEEEec
Confidence 47899999998543 134456667887666665543322 2232333333322 3467789999
Q ss_pred CCccCCCccHHHHHhCcccccCCCeeEEEeCC
Q 012559 213 LDLMDKGTNALEVLEGRSYRLQHPWVGIVNRS 244 (461)
Q Consensus 213 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s 244 (461)
++......+..+.++. ...+.+.++.+
T Consensus 207 ~~~~~~~~~~~~~l~~-----~~~~~~~Ip~~ 233 (267)
T 3k9g_A 207 FKKNRTHKTLFEILKT-----KDRFLGTISER 233 (267)
T ss_dssp ECTTCSCCHHHHHHTT-----STTEEEEEEC-
T ss_pred ccCcchHHHHHHHHhc-----CcccceecCcH
Confidence 9543333345555542 44566677654
No 472
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=85.57 E-value=0.48 Score=43.14 Aligned_cols=25 Identities=32% Similarity=0.504 Sum_probs=19.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
+.+.|+|+|.|+|||+|.-..|...
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3345678999999999999888743
No 473
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=85.55 E-value=0.38 Score=55.49 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.+++||..|||||||++.|.|.
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999997
No 474
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=85.40 E-value=0.39 Score=49.55 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G 57 (461)
+-|.+.|+|.++||||++|++|..
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHH
Confidence 459999999999999999999975
No 475
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.36 E-value=2.3 Score=42.79 Aligned_cols=25 Identities=16% Similarity=0.344 Sum_probs=21.5
Q ss_pred CCC-EEEEECCCCCCHHHHHHHhhCC
Q 012559 34 ALP-SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 34 ~lP-~IvVvG~~ssGKSSllnal~G~ 58 (461)
..| -|.+.|+||+|||++..|+.+.
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 344 4999999999999999999864
No 476
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=85.34 E-value=0.72 Score=38.56 Aligned_cols=22 Identities=18% Similarity=0.098 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
-|.+.|.+|+|||++..+|...
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCT
T ss_pred cEEEECCCCccHHHHHHHHHHh
Confidence 4889999999999999999865
No 477
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.30 E-value=3.9 Score=41.47 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
.-|.+.|.||+|||+|..||.+.
T Consensus 244 rGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp SEEEECSCTTSSHHHHHHHHHHH
T ss_pred CceEeeCCCCCcHHHHHHHHHhc
Confidence 34999999999999999999864
No 478
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=85.27 E-value=2.7 Score=38.82 Aligned_cols=66 Identities=18% Similarity=0.138 Sum_probs=37.3
Q ss_pred CCCcEEEeCCCCCccccCCCCccHHHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCCCCCceE-EEeccC
Q 012559 135 VVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPTGERTF-GVLTKL 213 (461)
Q Consensus 135 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti-~VltK~ 213 (461)
..+++|||+|+-... ..+....+..+|.+|+++.+... +......+.+.+...+.+.+ +|+|+.
T Consensus 128 ~yD~ViID~pp~~~~-------------~~~~~~~~~~aD~viiv~~~~~~--s~~~~~~~~~~l~~~~~~~~gvV~N~~ 192 (262)
T 2ph1_A 128 ELDHLLIDLPPGTGD-------------APLTVMQDAKPTGVVVVSTPQEL--TAVIVEKAINMAEETNTSVLGLVENMS 192 (262)
T ss_dssp SCSEEEEECCSSSSS-------------HHHHHHHHHCCSEEEEEECSSSC--CHHHHHHHHHHHHTTTCCEEEEEETTC
T ss_pred CCCEEEEECcCCCch-------------HHHHHHhhccCCeEEEEecCccc--hHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence 478999999985542 01111112246765555544432 23344445555555567777 689999
Q ss_pred Cc
Q 012559 214 DL 215 (461)
Q Consensus 214 D~ 215 (461)
|.
T Consensus 193 ~~ 194 (262)
T 2ph1_A 193 YF 194 (262)
T ss_dssp CE
T ss_pred cc
Confidence 85
No 479
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=85.24 E-value=3.5 Score=44.88 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++|+|+.++||||+|+.|.|..
T Consensus 609 i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 609 MLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 69999999999999999998863
No 480
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=84.94 E-value=0.3 Score=56.48 Aligned_cols=52 Identities=21% Similarity=0.292 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCccccHHHHHHHHHhCC-CCCceEEEecc
Q 012559 159 VEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDP-TGERTFGVLTK 212 (461)
Q Consensus 159 ~~~i~~~v~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~-~~~rti~VltK 212 (461)
.++.-.+++..++++. ||+...|+..+-......+-+.++. ...+|++++++
T Consensus 1222 QrQriaiARAllr~~~--ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAH 1274 (1321)
T 4f4c_A 1222 QKQRIAIARALVRNPK--ILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAH 1274 (1321)
T ss_dssp HHHHHHHHHHHHSCCS--EEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECS
T ss_pred HHHHHHHHHHHHhCCC--EEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 3455778999999998 6667777653333222223344443 25789988876
No 481
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=84.84 E-value=0.79 Score=43.61 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
.-|.+.|.+|+|||+|..+|.+.
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 45899999999999999999875
No 482
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=84.78 E-value=2.6 Score=45.85 Aligned_cols=26 Identities=19% Similarity=0.373 Sum_probs=22.4
Q ss_pred CCCCE-EEEECCCCCCHHHHHHHhhCC
Q 012559 33 EALPS-VAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 33 ~~lP~-IvVvG~~ssGKSSllnal~G~ 58 (461)
+..|. |.+.|.||+|||+|..++.+.
T Consensus 235 ~~~p~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 235 VKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCCCEEEEECCTTSCHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34454 999999999999999999875
No 483
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=84.74 E-value=0.42 Score=44.52 Aligned_cols=25 Identities=16% Similarity=0.345 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
+...|+|.|..||||||+.+.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999754
No 484
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=84.68 E-value=0.41 Score=55.38 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.++|||..|||||||++.|+|.
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTS
T ss_pred EEEEEecCCCcHHHHHHHhccc
Confidence 6899999999999999999996
No 485
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=83.90 E-value=1.1 Score=43.08 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
..+.|.+.|.+|+|||++..+|...
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3567999999999999999999754
No 486
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=83.73 E-value=0.53 Score=45.78 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCC
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
...++|.|.+|+|||||++++.+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999874
No 487
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=83.55 E-value=0.66 Score=41.44 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=20.2
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
+.+++.|.+|+|||+++.++...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999753
No 488
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=83.54 E-value=1.6 Score=39.90 Aligned_cols=23 Identities=17% Similarity=0.328 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
+-|.+.|.+|+|||++..+|...
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 55899999999999999999753
No 489
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=83.29 E-value=0.31 Score=50.85 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
.|+++|..+||||||+++|.|.
T Consensus 371 iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHHh
Confidence 5889999999999999999986
No 490
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=83.22 E-value=1.3 Score=43.23 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCC
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
.+.+.+.|.+|+|||+++.++...
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999854
No 491
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=83.09 E-value=0.6 Score=46.86 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=20.4
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCC
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
...|+++|.++|||||+.+.|...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 345889999999999999999753
No 492
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=83.08 E-value=0.41 Score=45.57 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=18.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G 57 (461)
..+.|+|.|..+||||||.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999875
No 493
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=82.96 E-value=0.51 Score=52.49 Aligned_cols=23 Identities=17% Similarity=0.459 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHhhCCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGRD 59 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~~ 59 (461)
.++++|..|||||||++.|.|..
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~ 485 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQ 485 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999543
No 494
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=82.49 E-value=0.61 Score=42.69 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=20.3
Q ss_pred CEEEEECCCCCCHHHHHHHhhCC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G~ 58 (461)
..|++.|..+|||||+.+.|...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 35899999999999999999854
No 495
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=82.48 E-value=1.1 Score=43.37 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHhhCC
Q 012559 34 ALPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 34 ~lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
..+.+.+.|.||+|||+++++++..
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4688999999999999999999864
No 496
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=82.32 E-value=0.74 Score=41.34 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCCHHHHHHHhhCC
Q 012559 35 LPSVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 35 lP~IvVvG~~ssGKSSllnal~G~ 58 (461)
-.-|+++|.+++|||+|...|...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 345899999999999999999865
No 497
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=82.25 E-value=0.55 Score=50.26 Aligned_cols=20 Identities=45% Similarity=0.599 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHhh
Q 012559 37 SVAVVGGQSSGKSSVLESVV 56 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~ 56 (461)
.++|+|..+||||||++.|+
T Consensus 350 ~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEECSTTSSHHHHHTTTH
T ss_pred EEEEEeeCCCCHHHHHHHHH
Confidence 58999999999999998765
No 498
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=82.23 E-value=0.66 Score=44.07 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=19.9
Q ss_pred CCCEE-EEECCCCCCHHHHHHHhhCC
Q 012559 34 ALPSV-AVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 34 ~lP~I-vVvG~~ssGKSSllnal~G~ 58 (461)
+.|.. .+.|.+|+|||+|..+|...
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 55654 45599999999999999843
No 499
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=81.89 E-value=1.6 Score=44.53 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHhhCC
Q 012559 37 SVAVVGGQSSGKSSVLESVVGR 58 (461)
Q Consensus 37 ~IvVvG~~ssGKSSllnal~G~ 58 (461)
-|.++|.+|+|||+|+.+|.+.
T Consensus 51 gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999874
No 500
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=81.66 E-value=0.69 Score=42.02 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=18.6
Q ss_pred CEEEEECCCCCCHHHHHHHhhC
Q 012559 36 PSVAVVGGQSSGKSSVLESVVG 57 (461)
Q Consensus 36 P~IvVvG~~ssGKSSllnal~G 57 (461)
-.++|+|.+++|||+|+..++.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999777764
Done!