BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012561
(461 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|D Chain D, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|F Chain F, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|H Chain H, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|B Chain B, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|D Chain D, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|F Chain F, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|H Chain H, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|B Chain B, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|A Chain A, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|A Chain A, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 452
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 70/167 (41%), Gaps = 19/167 (11%)
Query: 208 LNMERSHASLSEDLGKAQE---ELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDID 264
L MER LS D GK + + A Q ++ + Y + +++L+H + D +
Sbjct: 152 LLMER----LSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNE 207
Query: 265 AAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRV 324
A ++ +R + NL+ L GQ +S S ++R AL ++ +
Sbjct: 208 AIYDICRRNLDIERPTYTNLNRLIGQIVS----------SITASLRFDGALNVDLTEFQT 257
Query: 325 ELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQI 371
L + ++AE H++L+V+ ++ C +NQ+
Sbjct: 258 NLVPYPRGHFPLATYAPVISAEKAYHEQLSVA--EITNACFEPANQM 302
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|3EDL|A Chain A, Kinesin13-Microtubule Ring Complex
pdb|3DCO|A Chain A, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|A Chain A, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|A Chain A, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|B Chain B, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|D Chain D, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|F Chain F, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|H Chain H, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|3J1T|B Chain B, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|B Chain B, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 451
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 70/167 (41%), Gaps = 19/167 (11%)
Query: 208 LNMERSHASLSEDLGKAQE---ELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDID 264
L MER LS D GK + + A Q ++ + Y + +++L+H + D +
Sbjct: 152 LLMER----LSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNE 207
Query: 265 AAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRV 324
A ++ +R + NL+ L GQ +S S ++R AL ++ +
Sbjct: 208 AIYDICRRNLDIERPTYTNLNRLIGQIVS----------SITASLRFDGALNVDLTEFQT 257
Query: 325 ELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQI 371
L + ++AE H++L+V+ ++ C +NQ+
Sbjct: 258 NLVPYPRGHFPLATYAPVISAEKAYHEQLSVA--EITNACFEPANQM 302
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|A Chain A, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
Length = 440
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 70/167 (41%), Gaps = 19/167 (11%)
Query: 208 LNMERSHASLSEDLGKAQE---ELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDID 264
L MER LS D GK + + A Q ++ + Y + +++L+H + D +
Sbjct: 152 LLMER----LSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNE 207
Query: 265 AAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRV 324
A ++ +R + NL+ L GQ +S S ++R AL ++ +
Sbjct: 208 AIYDICRRNLDIERPTYTNLNRLIGQIVS----------SITASLRFDGALNVDLTEFQT 257
Query: 325 ELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQI 371
L + ++AE H++L+V+ ++ C +NQ+
Sbjct: 258 NLVPYPRGHFPLATYAPVISAEKAYHEQLSVA--EITNACFEPANQM 302
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|1IA0|A Chain A, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|A Chain A, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|A Chain A, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|A Chain A, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 451
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 70/167 (41%), Gaps = 19/167 (11%)
Query: 208 LNMERSHASLSEDLGKAQE---ELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDID 264
L MER LS D GK + + A Q ++ + Y + +++L+H + D +
Sbjct: 152 LLMER----LSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNE 207
Query: 265 AAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRV 324
A ++ +R + NL+ L GQ +S S ++R AL ++ +
Sbjct: 208 AIYDICRRNLDIERPTYTNLNRLIGQIVS----------SITASLRFDGALNVDLTEFQT 257
Query: 325 ELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQI 371
L + ++AE H++L+V+ ++ C +NQ+
Sbjct: 258 NLVPYPRAHFPLATYAPVISAEKAYHEQLSVA--EITNACFEPANQM 302
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA0|C Chain C, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA1|A Chain A, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|1SA1|C Chain C, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|3EDL|F Chain F, Kinesin13-Microtubule Ring Complex
Length = 451
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 70/167 (41%), Gaps = 19/167 (11%)
Query: 208 LNMERSHASLSEDLGKAQE---ELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDID 264
L MER LS D GK + + A Q ++ + Y + +++L+H + D +
Sbjct: 152 LLMER----LSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNE 207
Query: 265 AAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRV 324
A ++ +R + NL+ L GQ +S S ++R AL ++ +
Sbjct: 208 AIYDICRRNLDIERPTYTNLNRLIGQIVS----------SITASLRFDGALNVDLTEFQT 257
Query: 325 ELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQI 371
L + ++AE H++L+V+ ++ C +NQ+
Sbjct: 258 NLVPYPRIHFPLATYAPVISAEKAYHEQLSVA--EITNACFEPANQM 302
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKB|C Chain C, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|A Chain A, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|C Chain C, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|A Chain A, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKD|C Chain C, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|A Chain A, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3HKE|C Chain C, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|A Chain A, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|C Chain C, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|A Chain A, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|C Chain C, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
Length = 451
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 70/167 (41%), Gaps = 19/167 (11%)
Query: 208 LNMERSHASLSEDLGKAQE---ELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDID 264
L MER LS D GK + + A Q ++ + Y + +++L+H + D +
Sbjct: 152 LLMER----LSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNE 207
Query: 265 AAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRV 324
A ++ +R + NL+ L GQ +S S ++R AL ++ +
Sbjct: 208 AIYDICRRNLDIERPTYTNLNRLIGQIVS----------SITASLRFDGALNVDLTEFQT 257
Query: 325 ELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQI 371
L + ++AE H++L+V+ ++ C +NQ+
Sbjct: 258 NLVPYPRIHFPLATYAPVISAEKAYHEQLSVA--EITNACFEPANQM 302
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
pdb|1Z2B|C Chain C, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
Length = 448
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 70/167 (41%), Gaps = 19/167 (11%)
Query: 208 LNMERSHASLSEDLGKAQE---ELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDID 264
L MER LS D GK + + A Q ++ + Y + +++L+H + D +
Sbjct: 152 LLMER----LSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNE 207
Query: 265 AAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRV 324
A ++ +R + NL+ L GQ +S S ++R AL ++ +
Sbjct: 208 AIYDICRRNLDIERPTYTNLNRLIGQIVS----------SITASLRFDGALNVDLTEFQT 257
Query: 325 ELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQI 371
L + ++AE H++L+V+ ++ C +NQ+
Sbjct: 258 NLVPYPRIHFPLATYAPVISAEKAYHEQLSVA--EITNACFEPANQM 302
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.125 0.328
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,453,560
Number of Sequences: 62578
Number of extensions: 424300
Number of successful extensions: 1487
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 1367
Number of HSP's gapped (non-prelim): 154
length of query: 461
length of database: 14,973,337
effective HSP length: 102
effective length of query: 359
effective length of database: 8,590,381
effective search space: 3083946779
effective search space used: 3083946779
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (25.0 bits)