Query 012561
Match_columns 461
No_of_seqs 34 out of 36
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 03:56:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012561.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012561hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0239 Kinesin (KAR3 subfamil 100.0 7.3E-29 1.6E-33 263.6 15.3 283 172-454 23-329 (670)
2 PF07111 HCR: Alpha helical co 99.9 7.7E-23 1.7E-27 217.4 31.3 288 124-423 276-590 (739)
3 TIGR02169 SMC_prok_A chromosom 99.0 1.4E-05 3E-10 86.9 42.5 11 88-98 118-128 (1164)
4 TIGR02169 SMC_prok_A chromosom 99.0 1.2E-05 2.7E-10 87.3 40.7 23 112-134 162-184 (1164)
5 TIGR02168 SMC_prok_B chromosom 99.0 1.7E-05 3.7E-10 85.5 41.0 9 88-96 142-150 (1179)
6 TIGR02168 SMC_prok_B chromosom 98.9 5.1E-05 1.1E-09 82.0 41.0 11 88-98 120-130 (1179)
7 PRK03918 chromosome segregatio 98.8 0.0001 2.2E-09 79.6 39.3 130 124-255 162-295 (880)
8 PRK02224 chromosome segregatio 98.8 0.00019 4.1E-09 77.9 39.3 42 205-246 251-292 (880)
9 PRK02224 chromosome segregatio 98.7 0.00071 1.5E-08 73.6 42.4 76 113-188 352-430 (880)
10 COG1196 Smc Chromosome segrega 98.7 0.00019 4.1E-09 81.5 37.4 154 278-441 831-1007(1163)
11 PF05701 WEMBL: Weak chloropla 98.5 0.0013 2.7E-08 69.6 35.5 281 128-418 98-421 (522)
12 KOG0161 Myosin class II heavy 98.5 0.0029 6.3E-08 76.1 41.1 313 116-428 821-1156(1930)
13 TIGR00606 rad50 rad50. This fa 98.4 0.0026 5.6E-08 73.4 38.7 197 214-421 929-1132(1311)
14 COG1196 Smc Chromosome segrega 98.4 0.008 1.7E-07 68.7 41.6 91 294-387 374-464 (1163)
15 PRK03918 chromosome segregatio 98.4 0.0055 1.2E-07 66.4 38.5 78 308-385 610-696 (880)
16 KOG0161 Myosin class II heavy 98.4 0.0045 9.7E-08 74.5 40.3 326 87-431 755-1124(1930)
17 PF07888 CALCOCO1: Calcium bin 98.3 0.0065 1.4E-07 65.6 34.1 180 138-332 150-333 (546)
18 KOG0612 Rho-associated, coiled 98.2 0.014 3.1E-07 67.7 36.6 103 234-336 582-693 (1317)
19 PF12128 DUF3584: Protein of u 98.1 0.016 3.4E-07 66.8 35.7 109 331-445 816-933 (1201)
20 PF12128 DUF3584: Protein of u 98.1 0.035 7.6E-07 64.0 41.2 137 291-427 464-679 (1201)
21 TIGR00606 rad50 rad50. This fa 98.1 0.046 9.9E-07 63.4 38.7 32 353-384 996-1027(1311)
22 PRK04778 septation ring format 98.0 0.013 2.9E-07 62.3 30.9 291 107-431 209-517 (569)
23 PF10174 Cast: RIM-binding pro 98.0 0.05 1.1E-06 61.0 35.4 71 220-290 302-386 (775)
24 PRK11637 AmiB activator; Provi 97.9 0.02 4.2E-07 58.6 27.9 42 297-338 181-222 (428)
25 PRK11637 AmiB activator; Provi 97.9 0.016 3.5E-07 59.2 27.1 46 307-352 202-247 (428)
26 PF07888 CALCOCO1: Calcium bin 97.8 0.056 1.2E-06 58.7 31.2 193 143-351 141-338 (546)
27 PF00038 Filament: Intermediat 97.8 0.034 7.3E-07 53.7 30.2 92 262-353 210-305 (312)
28 PRK09039 hypothetical protein; 97.8 0.0036 7.8E-08 63.3 20.0 174 212-444 39-216 (343)
29 PF00038 Filament: Intermediat 97.8 0.044 9.6E-07 53.0 33.2 129 114-246 5-137 (312)
30 PF09726 Macoilin: Transmembra 97.7 0.064 1.4E-06 59.4 30.4 185 114-330 422-635 (697)
31 PHA02562 46 endonuclease subun 97.7 0.038 8.3E-07 57.0 27.1 53 140-192 190-242 (562)
32 PRK04778 septation ring format 97.7 0.025 5.5E-07 60.3 26.2 189 108-303 220-425 (569)
33 PF00261 Tropomyosin: Tropomyo 97.7 0.049 1.1E-06 52.1 25.1 141 289-439 92-236 (237)
34 PF06160 EzrA: Septation ring 97.6 0.093 2E-06 56.2 29.0 246 107-352 205-486 (560)
35 KOG0996 Structural maintenance 97.6 0.22 4.7E-06 58.3 32.7 232 104-352 296-556 (1293)
36 PHA02562 46 endonuclease subun 97.6 0.046 9.9E-07 56.4 25.1 65 223-290 185-249 (562)
37 PRK10929 putative mechanosensi 97.4 0.28 6E-06 57.2 31.3 302 87-432 23-361 (1109)
38 COG0419 SbcC ATPase involved i 97.4 0.39 8.5E-06 53.8 34.9 204 154-379 169-378 (908)
39 KOG0996 Structural maintenance 97.3 0.22 4.9E-06 58.2 28.8 289 86-413 774-1071(1293)
40 KOG4674 Uncharacterized conser 97.3 0.78 1.7E-05 55.9 33.7 228 109-349 804-1036(1822)
41 PRK01156 chromosome segregatio 97.1 0.74 1.6E-05 51.1 37.2 32 390-421 402-433 (895)
42 COG0419 SbcC ATPase involved i 97.0 0.93 2E-05 50.9 39.7 181 237-430 560-752 (908)
43 PF01576 Myosin_tail_1: Myosin 97.0 0.00018 4E-09 79.9 0.0 295 136-438 213-559 (859)
44 PF00261 Tropomyosin: Tropomyo 96.9 0.44 9.5E-06 45.7 23.0 194 142-349 5-208 (237)
45 KOG0612 Rho-associated, coiled 96.9 1.6 3.5E-05 51.6 31.1 219 116-335 471-746 (1317)
46 PF01576 Myosin_tail_1: Myosin 96.8 0.00028 6.2E-09 78.5 0.0 227 138-385 102-344 (859)
47 PRK01156 chromosome segregatio 96.8 1.2 2.5E-05 49.6 40.8 14 367-380 700-713 (895)
48 PF10473 CENP-F_leu_zip: Leuci 96.8 0.034 7.4E-07 50.9 13.1 104 267-377 9-116 (140)
49 PF09726 Macoilin: Transmembra 96.8 0.82 1.8E-05 51.0 25.9 53 138-190 425-480 (697)
50 KOG0971 Microtubule-associated 96.8 1.7 3.7E-05 50.4 38.9 251 160-447 259-552 (1243)
51 KOG0249 LAR-interacting protei 96.7 0.15 3.3E-06 57.2 19.8 148 216-390 167-343 (916)
52 KOG0980 Actin-binding protein 96.7 1.7 3.7E-05 50.0 30.7 173 134-328 382-554 (980)
53 PRK04863 mukB cell division pr 96.6 2.6 5.5E-05 50.9 39.8 118 294-415 440-576 (1486)
54 PF05701 WEMBL: Weak chloropla 96.6 1.4 3E-05 47.2 36.0 187 214-421 283-491 (522)
55 KOG0963 Transcription factor/C 96.5 1.9 4E-05 48.0 27.7 236 180-435 148-435 (629)
56 KOG0243 Kinesin-like protein [ 96.5 2.5 5.5E-05 49.3 33.4 141 135-275 408-560 (1041)
57 KOG0977 Nuclear envelope prote 96.5 0.83 1.8E-05 50.0 22.8 127 257-383 151-338 (546)
58 KOG4674 Uncharacterized conser 96.5 3.6 7.9E-05 50.5 38.3 211 212-422 668-930 (1822)
59 KOG1029 Endocytic adaptor prot 96.4 2.8 6E-05 48.2 28.6 180 216-401 420-613 (1118)
60 KOG0977 Nuclear envelope prote 96.2 2.7 5.9E-05 46.1 28.8 96 82-186 30-136 (546)
61 PRK11281 hypothetical protein; 96.1 4.1 8.9E-05 48.0 28.9 80 353-432 297-381 (1113)
62 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.1 0.42 9E-06 42.3 15.3 117 264-380 6-130 (132)
63 KOG0250 DNA repair protein RAD 96.1 1.7 3.6E-05 50.8 23.8 178 136-320 300-485 (1074)
64 PF05667 DUF812: Protein of un 96.1 3 6.5E-05 45.9 29.8 198 107-309 339-539 (594)
65 COG4477 EzrA Negative regulato 96.1 1.1 2.3E-05 49.2 21.0 136 197-343 294-429 (570)
66 TIGR01843 type_I_hlyD type I s 96.1 0.85 1.8E-05 44.9 18.8 17 370-386 254-270 (423)
67 PF05483 SCP-1: Synaptonemal c 96.0 3.6 7.8E-05 46.5 34.2 132 121-291 216-347 (786)
68 PF10174 Cast: RIM-binding pro 96.0 3.7 8.1E-05 46.7 38.4 47 394-440 675-721 (775)
69 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.0 0.16 3.4E-06 44.9 12.2 113 292-417 6-118 (132)
70 PF08317 Spc7: Spc7 kinetochor 96.0 2 4.3E-05 43.2 23.1 25 136-160 73-97 (325)
71 COG1340 Uncharacterized archae 95.9 2.4 5.2E-05 43.4 30.6 207 212-426 62-280 (294)
72 TIGR01843 type_I_hlyD type I s 95.9 1.2 2.7E-05 43.8 19.1 49 305-353 139-187 (423)
73 KOG0976 Rho/Rac1-interacting s 95.6 6 0.00013 45.9 31.3 234 146-386 75-382 (1265)
74 PF05622 HOOK: HOOK protein; 95.6 0.011 2.4E-07 64.3 3.9 185 218-420 178-386 (713)
75 COG1579 Zn-ribbon protein, pos 95.5 2.2 4.8E-05 42.4 19.1 119 167-297 14-132 (239)
76 TIGR01000 bacteriocin_acc bact 95.4 3.5 7.6E-05 42.8 20.9 25 368-392 297-321 (457)
77 COG1579 Zn-ribbon protein, pos 95.4 0.5 1.1E-05 46.8 14.1 120 307-441 14-133 (239)
78 PF13863 DUF4200: Domain of un 95.3 1.6 3.6E-05 37.2 16.3 109 139-254 8-116 (126)
79 PF04156 IncA: IncA protein; 95.2 0.65 1.4E-05 42.2 13.5 109 229-344 77-185 (191)
80 PRK09039 hypothetical protein; 95.2 2.2 4.8E-05 43.5 18.5 46 287-332 142-187 (343)
81 PF13949 ALIX_LYPXL_bnd: ALIX 95.1 3.2 7E-05 39.8 20.9 95 343-448 195-292 (296)
82 KOG4643 Uncharacterized coiled 95.1 9.3 0.0002 45.1 33.8 148 212-363 408-559 (1195)
83 TIGR02680 conserved hypothetic 95.1 10 0.00022 45.3 28.9 34 319-352 923-956 (1353)
84 PF09789 DUF2353: Uncharacteri 95.1 4.9 0.00011 41.5 20.9 78 275-352 126-203 (319)
85 PF15070 GOLGA2L5: Putative go 95.0 7.2 0.00016 43.3 27.3 131 167-300 157-311 (617)
86 PF05622 HOOK: HOOK protein; 95.0 0.0063 1.4E-07 66.2 0.0 59 287-345 361-419 (713)
87 PF05667 DUF812: Protein of un 95.0 1.2 2.6E-05 48.9 17.0 146 297-442 329-501 (594)
88 PF05911 DUF869: Plant protein 95.0 3.8 8.3E-05 46.6 21.1 111 159-269 533-646 (769)
89 PF12718 Tropomyosin_1: Tropom 94.9 2.1 4.5E-05 39.0 15.6 129 286-421 4-132 (143)
90 TIGR03007 pepcterm_ChnLen poly 94.8 5 0.00011 41.6 20.1 66 353-418 315-383 (498)
91 PF05557 MAD: Mitotic checkpoi 94.6 0.28 6E-06 53.8 11.0 99 322-420 508-622 (722)
92 KOG0962 DNA repair protein RAD 94.5 15 0.00032 44.2 28.6 27 353-379 1053-1079(1294)
93 PRK11281 hypothetical protein; 94.5 2.9 6.3E-05 49.1 19.2 127 272-422 132-264 (1113)
94 PF05557 MAD: Mitotic checkpoi 94.4 0.03 6.6E-07 61.1 3.2 105 309-413 405-519 (722)
95 TIGR01000 bacteriocin_acc bact 94.3 7.6 0.00017 40.3 21.3 73 278-352 239-312 (457)
96 PRK10361 DNA recombination pro 94.0 7.7 0.00017 42.1 19.9 166 122-289 14-222 (475)
97 PF15066 CAGE1: Cancer-associa 94.0 11 0.00025 41.1 21.0 154 159-330 350-505 (527)
98 KOG0239 Kinesin (KAR3 subfamil 93.9 3.8 8.2E-05 45.8 17.9 125 146-274 169-296 (670)
99 PF10186 Atg14: UV radiation r 93.6 3.5 7.7E-05 38.9 15.0 67 319-385 22-100 (302)
100 PF14662 CCDC155: Coiled-coil 93.5 8.1 0.00018 37.7 20.9 137 231-399 6-160 (193)
101 PF08614 ATG16: Autophagy prot 93.4 0.29 6.2E-06 45.6 7.3 144 236-386 20-168 (194)
102 PF09304 Cortex-I_coil: Cortex 93.3 2.8 6.1E-05 37.5 12.8 48 279-326 6-53 (107)
103 PF14915 CCDC144C: CCDC144C pr 93.3 12 0.00025 38.9 22.2 186 216-423 3-198 (305)
104 PF09789 DUF2353: Uncharacteri 93.2 4.6 9.9E-05 41.8 16.0 132 216-347 13-177 (319)
105 KOG0964 Structural maintenance 93.2 23 0.0005 42.0 25.8 146 109-254 186-370 (1200)
106 TIGR03185 DNA_S_dndD DNA sulfu 93.0 16 0.00036 39.8 33.3 69 310-378 391-465 (650)
107 PF10186 Atg14: UV radiation r 93.0 8.4 0.00018 36.4 16.4 82 219-300 63-144 (302)
108 TIGR03017 EpsF chain length de 92.9 12 0.00026 38.1 18.4 54 365-418 314-370 (444)
109 TIGR03185 DNA_S_dndD DNA sulfu 92.8 17 0.00037 39.7 33.3 26 260-285 390-415 (650)
110 KOG0933 Structural maintenance 92.7 27 0.00058 41.5 30.1 98 288-385 391-502 (1174)
111 PLN02939 transferase, transfer 92.7 26 0.00056 41.3 25.0 230 136-415 161-394 (977)
112 PF06160 EzrA: Septation ring 92.5 18 0.0004 39.2 32.9 172 195-379 289-461 (560)
113 KOG1899 LAR transmembrane tyro 92.4 11 0.00024 42.7 18.5 107 143-262 130-236 (861)
114 PF15619 Lebercilin: Ciliary p 92.3 11 0.00023 36.2 20.6 117 293-419 72-193 (194)
115 TIGR03007 pepcterm_ChnLen poly 91.9 18 0.00038 37.6 21.0 31 322-352 315-345 (498)
116 PRK10246 exonuclease subunit S 91.5 33 0.00071 39.9 35.7 23 115-137 172-194 (1047)
117 PF09730 BicD: Microtubule-ass 91.3 31 0.00067 39.4 30.7 118 274-418 582-717 (717)
118 PF04156 IncA: IncA protein; 91.3 5.4 0.00012 36.3 12.6 92 257-348 77-168 (191)
119 KOG0249 LAR-interacting protei 91.2 7.9 0.00017 44.3 15.9 183 137-352 74-258 (916)
120 PF05911 DUF869: Plant protein 90.8 22 0.00048 40.7 19.2 180 218-415 512-691 (769)
121 KOG0976 Rho/Rac1-interacting s 90.6 41 0.00088 39.5 29.3 204 192-416 303-509 (1265)
122 smart00787 Spc7 Spc7 kinetocho 90.6 11 0.00023 38.6 15.1 121 210-330 142-266 (312)
123 PF09787 Golgin_A5: Golgin sub 90.2 29 0.00064 37.2 26.5 15 136-150 121-135 (511)
124 KOG0978 E3 ubiquitin ligase in 90.1 39 0.00085 38.5 31.6 246 113-375 51-334 (698)
125 PF09728 Taxilin: Myosin-like 90.1 24 0.00051 35.9 33.0 62 353-414 231-296 (309)
126 PF13870 DUF4201: Domain of un 90.0 15 0.00033 33.6 18.1 155 222-384 16-174 (177)
127 KOG0250 DNA repair protein RAD 89.9 49 0.0011 39.4 33.4 15 83-97 154-169 (1074)
128 PRK04863 mukB cell division pr 89.8 57 0.0012 40.0 37.8 25 357-381 553-577 (1486)
129 PRK10246 exonuclease subunit S 89.7 47 0.001 38.8 40.3 70 318-387 778-854 (1047)
130 PF12795 MscS_porin: Mechanose 89.6 20 0.00043 34.4 21.1 140 273-429 83-229 (240)
131 KOG4673 Transcription factor T 89.5 46 0.001 38.5 34.6 146 267-420 473-628 (961)
132 PF08317 Spc7: Spc7 kinetochor 89.4 26 0.00056 35.4 21.0 89 89-194 113-201 (325)
133 PF06818 Fez1: Fez1; InterPro 89.3 6.5 0.00014 38.5 11.8 120 216-352 35-170 (202)
134 TIGR01005 eps_transp_fam exopo 89.2 40 0.00086 37.2 21.4 31 160-190 184-214 (754)
135 cd07671 F-BAR_PSTPIP1 The F-BA 89.1 24 0.00052 34.6 21.3 198 90-308 22-233 (242)
136 TIGR01005 eps_transp_fam exopo 89.1 40 0.00086 37.2 24.2 72 360-445 343-417 (754)
137 PF04111 APG6: Autophagy prote 89.1 9.5 0.00021 38.7 13.4 81 163-250 57-137 (314)
138 KOG0946 ER-Golgi vesicle-tethe 89.1 53 0.0011 38.5 24.1 47 284-330 701-750 (970)
139 KOG0999 Microtubule-associated 88.3 51 0.0011 37.3 23.4 68 309-376 106-191 (772)
140 PF04111 APG6: Autophagy prote 88.3 5.3 0.00011 40.5 10.9 95 258-352 40-134 (314)
141 PF09304 Cortex-I_coil: Cortex 88.2 9 0.0002 34.4 11.1 71 244-314 6-76 (107)
142 PF12718 Tropomyosin_1: Tropom 88.2 20 0.00044 32.6 16.6 98 216-313 4-104 (143)
143 PF13514 AAA_27: AAA domain 88.1 60 0.0013 37.9 33.3 60 353-412 894-955 (1111)
144 KOG0240 Kinesin (SMY1 subfamil 88.0 51 0.0011 37.1 19.5 81 183-266 383-482 (607)
145 PF09730 BicD: Microtubule-ass 87.7 57 0.0012 37.3 19.4 149 215-380 30-181 (717)
146 KOG4643 Uncharacterized coiled 87.6 71 0.0015 38.3 30.4 278 104-386 195-533 (1195)
147 PF13851 GAS: Growth-arrest sp 87.5 27 0.00059 33.4 16.6 129 291-421 29-167 (201)
148 PF08614 ATG16: Autophagy prot 87.4 5 0.00011 37.5 9.5 123 230-352 64-186 (194)
149 KOG0971 Microtubule-associated 87.3 72 0.0016 38.0 33.0 196 182-387 298-557 (1243)
150 PF10212 TTKRSYEDQ: Predicted 87.1 38 0.00083 37.4 17.1 84 243-329 420-506 (518)
151 KOG0963 Transcription factor/C 86.9 60 0.0013 36.7 26.2 84 193-276 237-325 (629)
152 PF15294 Leu_zip: Leucine zipp 86.8 40 0.00086 34.6 24.8 146 217-379 130-277 (278)
153 smart00787 Spc7 Spc7 kinetocho 86.6 41 0.00088 34.5 23.6 123 223-352 127-253 (312)
154 PF03904 DUF334: Domain of unk 86.5 33 0.00071 34.5 14.9 94 139-236 44-137 (230)
155 KOG4673 Transcription factor T 86.2 73 0.0016 37.0 27.4 77 239-328 522-598 (961)
156 PF10191 COG7: Golgi complex c 85.9 30 0.00064 39.2 16.1 150 238-415 36-185 (766)
157 PF13166 AAA_13: AAA domain 85.7 58 0.0012 35.3 23.5 17 241-257 368-384 (712)
158 PF05010 TACC: Transforming ac 85.6 38 0.00082 33.1 22.5 126 227-352 28-157 (207)
159 PF11932 DUF3450: Protein of u 85.4 12 0.00026 36.1 11.3 67 224-290 40-106 (251)
160 COG4942 Membrane-bound metallo 85.3 59 0.0013 35.1 27.0 67 311-384 186-253 (420)
161 PF11559 ADIP: Afadin- and alp 85.3 27 0.00058 31.2 13.3 100 304-413 46-149 (151)
162 cd07672 F-BAR_PSTPIP2 The F-BA 84.7 42 0.00092 32.9 21.6 179 109-292 29-222 (240)
163 PF13514 AAA_27: AAA domain 84.6 88 0.0019 36.6 35.6 10 369-378 861-870 (1111)
164 KOG0946 ER-Golgi vesicle-tethe 84.3 93 0.002 36.6 26.1 42 216-260 734-775 (970)
165 PF03962 Mnd1: Mnd1 family; I 84.1 14 0.00029 35.1 10.7 36 160-195 66-101 (188)
166 COG5059 KIP1 Kinesin-like prot 84.0 0.66 1.4E-05 50.2 2.3 36 418-454 285-320 (568)
167 PF15070 GOLGA2L5: Putative go 84.0 79 0.0017 35.5 36.4 96 325-440 224-319 (617)
168 PRK10884 SH3 domain-containing 83.9 12 0.00026 36.2 10.5 26 215-240 142-167 (206)
169 PF05791 Bacillus_HBL: Bacillu 83.6 29 0.00062 32.6 12.6 112 238-385 68-179 (184)
170 PF10212 TTKRSYEDQ: Predicted 83.6 11 0.00024 41.4 11.1 85 214-298 415-503 (518)
171 TIGR00998 8a0101 efflux pump m 83.3 47 0.001 32.3 14.8 57 296-352 80-136 (334)
172 KOG0979 Structural maintenance 83.0 1.1E+02 0.0024 36.5 19.5 99 319-417 243-359 (1072)
173 PF14197 Cep57_CLD_2: Centroso 82.7 11 0.00024 30.9 8.3 37 316-352 18-54 (69)
174 PF10481 CENP-F_N: Cenp-F N-te 82.7 22 0.00047 36.9 12.1 102 284-388 27-128 (307)
175 PF09738 DUF2051: Double stran 82.5 31 0.00067 35.4 13.3 150 271-420 101-299 (302)
176 KOG0980 Actin-binding protein 82.2 1.2E+02 0.0025 36.1 25.6 103 266-375 429-535 (980)
177 KOG1029 Endocytic adaptor prot 82.1 1.1E+02 0.0025 36.0 30.2 94 219-327 403-496 (1118)
178 PF13166 AAA_13: AAA domain 81.7 84 0.0018 34.1 19.8 6 444-449 487-492 (712)
179 PF14988 DUF4515: Domain of un 81.3 55 0.0012 31.7 17.3 121 129-254 76-198 (206)
180 PF12795 MscS_porin: Mechanose 81.2 53 0.0012 31.5 19.0 167 162-330 37-212 (240)
181 KOG0999 Microtubule-associated 80.7 1.1E+02 0.0024 34.9 22.7 147 160-307 47-195 (772)
182 COG4372 Uncharacterized protei 80.7 93 0.002 34.0 25.0 54 183-236 94-147 (499)
183 TIGR00618 sbcc exonuclease Sbc 79.9 1.3E+02 0.0027 35.0 36.1 48 392-446 461-508 (1042)
184 PF10498 IFT57: Intra-flagella 79.6 45 0.00097 34.9 13.5 104 106-230 216-319 (359)
185 TIGR00634 recN DNA repair prot 79.6 96 0.0021 33.5 19.9 29 369-397 346-374 (563)
186 PF10473 CENP-F_leu_zip: Leuci 79.5 53 0.0011 30.5 16.8 112 167-285 14-125 (140)
187 KOG0933 Structural maintenance 79.3 1.5E+02 0.0033 35.7 30.2 27 368-394 964-990 (1174)
188 PF06120 Phage_HK97_TLTM: Tail 79.1 62 0.0013 33.5 14.0 113 127-239 38-161 (301)
189 cd07624 BAR_SNX7_30 The Bin/Am 78.9 59 0.0013 30.7 15.3 71 314-404 99-169 (200)
190 PLN02939 transferase, transfer 78.8 1.5E+02 0.0032 35.3 20.1 136 188-352 239-383 (977)
191 cd09234 V_HD-PTP_like Protein- 78.8 79 0.0017 32.1 23.2 197 150-358 60-310 (337)
192 TIGR02894 DNA_bind_RsfA transc 78.6 14 0.0003 35.3 8.6 69 235-303 79-153 (161)
193 PF14662 CCDC155: Coiled-coil 78.4 72 0.0015 31.4 22.7 11 353-363 177-187 (193)
194 KOG0964 Structural maintenance 78.0 1.7E+02 0.0036 35.4 28.8 199 87-320 116-338 (1200)
195 PF07106 TBPIP: Tat binding pr 77.9 16 0.00034 33.3 8.6 95 258-352 61-159 (169)
196 PRK10929 putative mechanosensi 77.6 1.7E+02 0.0037 35.3 32.1 89 255-344 266-366 (1109)
197 PF15254 CCDC14: Coiled-coil d 77.3 91 0.002 36.4 15.8 122 284-415 429-554 (861)
198 COG1256 FlgK Flagellar hook-as 77.3 29 0.00062 38.2 11.8 92 250-344 111-214 (552)
199 PF03962 Mnd1: Mnd1 family; I 76.5 34 0.00074 32.5 10.7 73 277-352 71-149 (188)
200 PF10146 zf-C4H2: Zinc finger- 76.2 69 0.0015 31.7 13.0 84 266-352 6-95 (230)
201 PF04012 PspA_IM30: PspA/IM30 75.8 71 0.0015 30.0 17.6 157 233-413 16-181 (221)
202 PF06005 DUF904: Protein of un 75.7 28 0.00061 28.9 8.7 66 268-347 4-69 (72)
203 PF04849 HAP1_N: HAP1 N-termin 75.4 1.1E+02 0.0024 31.9 25.1 41 85-131 33-73 (306)
204 PF10168 Nup88: Nuclear pore c 75.4 1.5E+02 0.0033 33.7 17.0 72 266-341 598-670 (717)
205 PF10481 CENP-F_N: Cenp-F N-te 75.0 65 0.0014 33.5 12.8 62 259-327 65-126 (307)
206 TIGR02977 phageshock_pspA phag 74.9 54 0.0012 31.3 11.7 21 391-411 160-180 (219)
207 KOG0810 SNARE protein Syntaxin 74.8 1.1E+02 0.0023 31.6 16.0 70 226-295 33-102 (297)
208 PRK10361 DNA recombination pro 74.7 52 0.0011 36.0 12.7 28 405-432 141-168 (475)
209 cd08915 V_Alix_like Protein-in 74.7 98 0.0021 31.1 21.1 142 210-358 124-315 (342)
210 COG1842 PspA Phage shock prote 74.6 92 0.002 30.7 18.6 177 231-431 15-201 (225)
211 KOG0979 Structural maintenance 74.2 2E+02 0.0044 34.5 24.4 218 135-380 178-401 (1072)
212 PF04849 HAP1_N: HAP1 N-termin 74.1 1.2E+02 0.0025 31.7 20.9 145 245-392 88-257 (306)
213 TIGR01010 BexC_CtrB_KpsE polys 74.0 1E+02 0.0022 31.0 13.9 29 211-239 169-197 (362)
214 KOG0978 E3 ubiquitin ligase in 73.8 1.8E+02 0.0038 33.6 38.3 319 95-420 240-596 (698)
215 PF10267 Tmemb_cc2: Predicted 72.9 1.4E+02 0.003 32.0 19.8 80 130-218 236-315 (395)
216 PLN03188 kinesin-12 family pro 72.6 1.7 3.8E-05 51.6 1.4 28 426-453 81-112 (1320)
217 KOG4438 Centromere-associated 72.3 1.6E+02 0.0034 32.3 28.1 158 111-269 129-298 (446)
218 PF10146 zf-C4H2: Zinc finger- 72.2 71 0.0015 31.6 12.0 67 129-195 26-92 (230)
219 PF09787 Golgin_A5: Golgin sub 71.7 1.5E+02 0.0033 31.9 27.1 141 144-291 154-297 (511)
220 PRK10884 SH3 domain-containing 71.3 43 0.00092 32.5 10.1 78 265-345 90-167 (206)
221 PRK10698 phage shock protein P 71.0 76 0.0017 30.8 11.8 62 353-414 118-183 (222)
222 PRK10698 phage shock protein P 70.6 1.1E+02 0.0023 29.8 18.7 33 313-345 116-148 (222)
223 PRK08032 fliD flagellar cappin 70.6 21 0.00046 37.8 8.6 106 81-186 351-461 (462)
224 KOG0994 Extracellular matrix g 70.5 2.8E+02 0.006 34.5 30.9 166 107-298 1461-1635(1758)
225 PF12325 TMF_TATA_bd: TATA ele 70.0 71 0.0015 28.9 10.6 30 318-347 31-60 (120)
226 PF15619 Lebercilin: Ciliary p 69.8 1.1E+02 0.0024 29.5 21.6 108 216-326 72-187 (194)
227 cd09234 V_HD-PTP_like Protein- 69.6 1.3E+02 0.0029 30.5 20.8 161 278-448 155-337 (337)
228 PF08606 Prp19: Prp19/Pso4-lik 69.2 28 0.0006 29.3 7.2 62 268-329 8-69 (70)
229 PF14817 HAUS5: HAUS augmin-li 68.4 46 0.00099 37.5 10.9 83 304-386 73-166 (632)
230 PF13851 GAS: Growth-arrest sp 68.3 1.2E+02 0.0025 29.2 24.2 156 115-281 4-170 (201)
231 COG4942 Membrane-bound metallo 68.2 1.8E+02 0.004 31.5 24.1 31 210-240 71-101 (420)
232 PF12325 TMF_TATA_bd: TATA ele 68.0 94 0.002 28.1 11.2 82 243-331 26-110 (120)
233 cd00176 SPEC Spectrin repeats, 68.0 79 0.0017 27.2 18.5 41 275-315 72-112 (213)
234 TIGR03794 NHPM_micro_HlyD NHPM 67.8 1.5E+02 0.0033 30.5 17.3 18 221-238 98-115 (421)
235 cd09238 V_Alix_like_1 Protein- 67.8 1.5E+02 0.0032 30.3 20.4 166 183-356 99-310 (339)
236 PF11559 ADIP: Afadin- and alp 67.7 91 0.002 27.8 14.2 46 195-240 42-87 (151)
237 PF10498 IFT57: Intra-flagella 67.6 1.7E+02 0.0036 30.8 15.3 130 193-332 183-316 (359)
238 PF04871 Uso1_p115_C: Uso1 / p 66.9 1E+02 0.0022 28.1 12.5 25 328-352 81-105 (136)
239 PF00769 ERM: Ezrin/radixin/mo 66.9 1.4E+02 0.003 29.5 14.7 24 314-337 100-123 (246)
240 PF09755 DUF2046: Uncharacteri 66.6 1.7E+02 0.0038 30.6 31.2 83 184-279 84-167 (310)
241 KOG1962 B-cell receptor-associ 66.3 1.1E+02 0.0023 30.5 11.8 39 215-253 168-206 (216)
242 TIGR03017 EpsF chain length de 65.5 1.7E+02 0.0036 30.0 20.7 29 162-190 163-191 (444)
243 TIGR02971 heterocyst_DevB ABC 65.3 1.4E+02 0.0031 29.2 14.4 16 403-418 185-200 (327)
244 KOG1003 Actin filament-coating 65.2 1.5E+02 0.0033 29.5 21.7 191 226-438 4-203 (205)
245 KOG3850 Predicted membrane pro 65.1 1.6E+02 0.0035 32.1 13.5 97 128-239 282-378 (455)
246 PF11932 DUF3450: Protein of u 65.0 1.4E+02 0.003 28.9 13.8 67 217-283 40-106 (251)
247 KOG0018 Structural maintenance 64.7 3.3E+02 0.0071 33.1 19.5 71 126-197 312-386 (1141)
248 PF08618 Opi1: Transcription f 64.5 34 0.00074 36.9 8.7 35 117-151 228-262 (427)
249 PF14197 Cep57_CLD_2: Centroso 64.0 53 0.0011 27.0 7.9 33 299-331 36-68 (69)
250 COG2433 Uncharacterized conser 63.8 1.4E+02 0.003 34.1 13.3 93 136-243 420-512 (652)
251 PF09728 Taxilin: Myosin-like 63.5 1.8E+02 0.0039 29.7 32.5 185 217-409 72-277 (309)
252 KOG0288 WD40 repeat protein Ti 63.3 2E+02 0.0043 31.6 13.9 76 259-348 11-86 (459)
253 PF12761 End3: Actin cytoskele 63.2 57 0.0012 32.0 9.2 88 139-243 97-184 (195)
254 cd07648 F-BAR_FCHO The F-BAR ( 63.1 1.5E+02 0.0032 28.7 21.7 164 108-281 28-202 (261)
255 PRK12714 flgK flagellar hook-a 63.0 1.8E+02 0.0039 32.4 14.1 68 276-343 128-207 (624)
256 PRK10476 multidrug resistance 62.5 1.7E+02 0.0037 29.1 14.9 12 406-417 192-203 (346)
257 PF15035 Rootletin: Ciliary ro 62.3 1.5E+02 0.0032 28.4 15.7 149 127-296 5-162 (182)
258 KOG1899 LAR transmembrane tyro 61.8 65 0.0014 37.0 10.4 103 322-438 109-215 (861)
259 PF06005 DUF904: Protein of un 61.2 66 0.0014 26.7 8.0 59 233-291 11-69 (72)
260 cd07651 F-BAR_PombeCdc15_like 60.9 1.6E+02 0.0034 28.2 22.2 171 108-282 28-210 (236)
261 PF02050 FliJ: Flagellar FliJ 60.3 87 0.0019 25.1 12.6 30 315-344 10-39 (123)
262 TIGR02680 conserved hypothetic 60.0 4E+02 0.0086 32.5 41.6 134 211-352 296-456 (1353)
263 PF01920 Prefoldin_2: Prefoldi 59.6 83 0.0018 25.7 8.4 42 234-276 3-44 (106)
264 PRK03598 putative efflux pump 59.4 1.9E+02 0.0041 28.6 12.7 19 335-353 118-136 (331)
265 PF08647 BRE1: BRE1 E3 ubiquit 59.3 1.1E+02 0.0024 26.0 10.8 74 160-240 7-80 (96)
266 PRK09841 cryptic autophosphory 59.0 1.8E+02 0.0038 32.7 13.3 41 197-237 250-292 (726)
267 PRK11546 zraP zinc resistance 58.8 33 0.00071 32.1 6.5 72 268-339 47-118 (143)
268 PF04912 Dynamitin: Dynamitin 58.7 2.3E+02 0.0049 29.4 14.9 48 257-304 325-372 (388)
269 PRK12705 hypothetical protein; 58.6 2.9E+02 0.0063 30.5 15.4 134 299-444 52-224 (508)
270 PF11802 CENP-K: Centromere-as 58.6 1.9E+02 0.0042 29.8 12.3 59 353-425 94-152 (268)
271 PF05615 THOC7: Tho complex su 58.4 1.3E+02 0.0029 26.6 12.0 79 269-348 47-125 (139)
272 COG4026 Uncharacterized protei 58.3 55 0.0012 33.4 8.4 55 246-300 148-202 (290)
273 PRK05689 fliJ flagellar biosyn 58.2 1.3E+02 0.0029 26.5 10.2 94 291-387 4-103 (147)
274 PF09738 DUF2051: Double stran 58.1 66 0.0014 33.1 9.1 81 348-428 91-171 (302)
275 COG3937 Uncharacterized conser 58.0 96 0.0021 28.1 9.0 90 84-187 18-107 (108)
276 PF09731 Mitofilin: Mitochondr 58.0 2.7E+02 0.0059 30.0 19.5 35 270-304 366-400 (582)
277 PF11180 DUF2968: Protein of u 57.9 1.3E+02 0.0029 29.6 10.7 75 269-343 106-180 (192)
278 KOG0018 Structural maintenance 57.3 4.4E+02 0.0094 32.2 26.6 73 310-385 402-474 (1141)
279 KOG4360 Uncharacterized coiled 56.7 1.5E+02 0.0033 33.3 12.0 97 227-323 206-302 (596)
280 cd07653 F-BAR_CIP4-like The F- 56.6 1.8E+02 0.0039 27.6 23.3 165 108-278 28-218 (251)
281 KOG3091 Nuclear pore complex, 56.2 2.2E+02 0.0047 31.8 13.0 99 328-430 408-506 (508)
282 TIGR00618 sbcc exonuclease Sbc 55.9 3.9E+02 0.0085 31.2 41.3 24 114-137 230-253 (1042)
283 cd04787 HTH_HMRTR_unk Helix-Tu 55.9 84 0.0018 27.7 8.4 74 85-187 37-110 (133)
284 KOG0804 Cytoplasmic Zn-finger 55.5 3.1E+02 0.0068 30.4 13.9 70 143-230 330-400 (493)
285 PF01920 Prefoldin_2: Prefoldi 55.2 66 0.0014 26.3 7.2 32 217-248 10-41 (106)
286 KOG3433 Protein involved in me 55.1 1.9E+02 0.0041 28.8 11.1 87 277-377 83-177 (203)
287 PF13935 Ead_Ea22: Ead/Ea22-li 54.9 98 0.0021 28.0 8.7 67 341-416 70-138 (139)
288 PF07798 DUF1640: Protein of u 54.0 1.9E+02 0.004 26.9 14.3 85 310-415 51-138 (177)
289 KOG0804 Cytoplasmic Zn-finger 54.0 3.1E+02 0.0067 30.5 13.6 21 359-379 425-445 (493)
290 TIGR03752 conj_TIGR03752 integ 54.0 81 0.0018 34.6 9.4 78 223-300 63-141 (472)
291 PRK07191 flgK flagellar hook-a 53.9 1.8E+02 0.004 30.8 11.8 69 276-344 128-210 (456)
292 PRK13182 racA polar chromosome 53.2 1.5E+02 0.0032 28.3 10.0 103 83-191 34-146 (175)
293 PTZ00464 SNF-7-like protein; P 53.2 2.3E+02 0.005 27.8 14.8 73 192-271 59-131 (211)
294 COG4026 Uncharacterized protei 52.9 90 0.0019 32.0 8.9 131 77-236 55-187 (290)
295 PF12614 RRF_GI: Ribosome recy 52.8 37 0.0008 31.4 5.8 70 306-378 18-93 (128)
296 PF06810 Phage_GP20: Phage min 52.8 1.6E+02 0.0034 27.4 9.9 23 218-240 26-48 (155)
297 PF12329 TMF_DNA_bd: TATA elem 52.6 68 0.0015 26.5 6.8 36 353-388 38-73 (74)
298 PF07851 TMPIT: TMPIT-like pro 52.5 1.3E+02 0.0027 31.7 10.2 98 334-444 7-109 (330)
299 cd07647 F-BAR_PSTPIP The F-BAR 52.3 2.3E+02 0.0049 27.4 21.5 170 109-281 29-212 (239)
300 KOG0982 Centrosomal protein Nu 52.1 3.7E+02 0.0081 29.8 20.4 106 200-315 362-476 (502)
301 PF06705 SF-assemblin: SF-asse 52.0 2.3E+02 0.005 27.4 20.7 149 90-253 77-239 (247)
302 PF06637 PV-1: PV-1 protein (P 52.0 3.6E+02 0.0077 29.6 13.9 129 143-312 261-393 (442)
303 KOG0962 DNA repair protein RAD 51.9 5.6E+02 0.012 31.8 33.1 69 337-405 997-1073(1294)
304 PRK09630 DNA topoisomerase IV 51.6 28 0.0006 38.1 5.5 55 86-140 391-456 (479)
305 PF13935 Ead_Ea22: Ead/Ea22-li 51.5 1.3E+02 0.0029 27.1 9.1 75 88-183 65-139 (139)
306 PF14817 HAUS5: HAUS augmin-li 51.3 4.2E+02 0.0091 30.2 25.4 72 160-231 83-161 (632)
307 PF04728 LPP: Lipoprotein leuc 51.1 1.1E+02 0.0024 24.8 7.5 53 163-243 3-55 (56)
308 PF04870 Moulting_cycle: Moult 51.0 18 0.00038 37.6 3.8 47 77-145 221-267 (325)
309 KOG0994 Extracellular matrix g 50.5 6.1E+02 0.013 31.8 27.1 230 131-385 1503-1740(1758)
310 PRK11519 tyrosine kinase; Prov 50.4 2.5E+02 0.0053 31.5 12.6 25 211-235 266-290 (719)
311 KOG4593 Mitotic checkpoint pro 50.4 4.7E+02 0.01 30.5 26.9 224 203-436 78-307 (716)
312 PRK06665 flgK flagellar hook-a 50.3 67 0.0015 35.6 8.3 68 277-344 141-222 (627)
313 TIGR02044 CueR Cu(I)-responsiv 50.1 1E+02 0.0022 26.9 7.9 35 153-187 76-110 (127)
314 PF11544 Spc42p: Spindle pole 50.0 47 0.001 28.4 5.5 42 315-356 3-44 (76)
315 PF06428 Sec2p: GDP/GTP exchan 49.9 49 0.0011 29.1 5.9 37 199-235 2-39 (100)
316 KOG1924 RhoA GTPase effector D 49.7 33 0.00072 40.1 5.9 55 323-377 893-954 (1102)
317 PF05837 CENP-H: Centromere pr 49.6 1.8E+02 0.0038 25.4 10.3 71 170-244 3-83 (106)
318 TIGR02231 conserved hypothetic 49.4 86 0.0019 33.4 8.7 33 318-350 72-104 (525)
319 PF04380 BMFP: Membrane fusoge 49.1 21 0.00045 29.7 3.3 45 372-422 31-75 (79)
320 PF02403 Seryl_tRNA_N: Seryl-t 48.6 1.6E+02 0.0036 24.7 9.2 15 370-384 82-96 (108)
321 PF05700 BCAS2: Breast carcino 48.5 1.7E+02 0.0037 28.3 9.8 74 312-385 145-219 (221)
322 PRK05683 flgK flagellar hook-a 48.2 3.5E+02 0.0075 30.8 13.4 91 242-344 106-210 (676)
323 KOG0982 Centrosomal protein Nu 48.2 4.3E+02 0.0093 29.4 27.2 140 215-380 328-476 (502)
324 PF14362 DUF4407: Domain of un 48.1 2.8E+02 0.0062 27.3 14.9 30 216-245 132-161 (301)
325 PF14712 Snapin_Pallidin: Snap 47.9 1.5E+02 0.0033 24.2 10.2 69 284-352 9-78 (92)
326 PRK06569 F0F1 ATP synthase sub 47.6 1.1E+02 0.0024 28.9 8.1 56 286-341 38-94 (155)
327 PF02609 Exonuc_VII_S: Exonucl 47.6 64 0.0014 24.7 5.5 46 376-421 6-51 (53)
328 PRK06799 flgK flagellar hook-a 47.5 1.8E+02 0.0039 30.8 10.6 92 241-344 110-213 (431)
329 PF03999 MAP65_ASE1: Microtubu 47.4 31 0.00067 37.8 5.2 180 260-442 206-405 (619)
330 cd07655 F-BAR_PACSIN The F-BAR 47.4 2.9E+02 0.0062 27.2 22.2 176 90-281 22-227 (258)
331 TIGR02231 conserved hypothetic 47.0 2.3E+02 0.0049 30.3 11.3 41 292-332 134-174 (525)
332 PF07106 TBPIP: Tat binding pr 46.7 93 0.002 28.3 7.4 62 313-375 75-136 (169)
333 PRK12765 flagellar capping pro 46.6 79 0.0017 35.0 8.1 81 109-189 510-590 (595)
334 PRK08453 fliD flagellar cappin 46.5 74 0.0016 36.2 8.0 103 81-183 556-666 (673)
335 COG3074 Uncharacterized protei 46.5 1.7E+02 0.0037 25.2 8.3 71 220-290 5-75 (79)
336 TIGR02894 DNA_bind_RsfA transc 46.5 74 0.0016 30.5 6.9 56 233-288 90-145 (161)
337 KOG4403 Cell surface glycoprot 46.5 4.6E+02 0.01 29.3 17.8 129 159-289 245-389 (575)
338 PF05837 CENP-H: Centromere pr 45.2 1.8E+02 0.0039 25.3 8.6 70 314-387 7-76 (106)
339 PF05103 DivIVA: DivIVA protei 43.5 23 0.0005 30.2 2.9 32 235-266 27-58 (131)
340 PF05335 DUF745: Protein of un 43.5 3.2E+02 0.0069 26.5 13.8 102 308-422 61-162 (188)
341 PF10211 Ax_dynein_light: Axon 43.2 2.7E+02 0.0058 26.5 10.1 89 235-331 93-184 (189)
342 PF02183 HALZ: Homeobox associ 43.2 65 0.0014 24.6 4.9 16 310-325 26-41 (45)
343 PF10224 DUF2205: Predicted co 43.1 92 0.002 26.6 6.3 47 214-260 18-64 (80)
344 cd07664 BAR_SNX2 The Bin/Amphi 42.8 3.5E+02 0.0075 26.8 18.0 164 155-333 7-200 (234)
345 PF05483 SCP-1: Synaptonemal c 42.2 6.3E+02 0.014 29.6 38.2 189 220-408 426-654 (786)
346 PF02403 Seryl_tRNA_N: Seryl-t 42.1 1.5E+02 0.0033 24.9 7.5 28 279-306 26-53 (108)
347 PF05384 DegS: Sensor protein 42.0 3.1E+02 0.0067 26.0 16.7 95 267-361 5-111 (159)
348 TIGR00293 prefoldin, archaeal 41.9 2.3E+02 0.0049 24.4 10.8 38 204-241 85-122 (126)
349 TIGR00998 8a0101 efflux pump m 41.6 3.4E+02 0.0075 26.4 14.4 16 371-386 188-203 (334)
350 KOG4637 Adaptor for phosphoino 41.5 5.2E+02 0.011 28.4 14.0 145 167-339 133-291 (464)
351 TIGR00570 cdk7 CDK-activating 41.1 1.2E+02 0.0027 31.5 8.1 85 236-321 77-189 (309)
352 TIGR02051 MerR Hg(II)-responsi 40.9 2.3E+02 0.0049 24.8 8.6 36 152-187 72-107 (124)
353 PF04582 Reo_sigmaC: Reovirus 40.7 54 0.0012 34.4 5.4 130 260-420 27-156 (326)
354 PF06008 Laminin_I: Laminin Do 40.7 3.6E+02 0.0077 26.3 26.7 164 230-428 88-251 (264)
355 PF05529 Bap31: B-cell recepto 40.7 1.3E+02 0.0028 27.9 7.5 34 313-346 157-190 (192)
356 PRK15422 septal ring assembly 40.3 2.3E+02 0.0049 24.6 8.2 72 220-291 5-76 (79)
357 TIGR02473 flagell_FliJ flagell 40.3 2.4E+02 0.0051 24.2 11.6 93 294-386 4-99 (141)
358 PF14992 TMCO5: TMCO5 family 40.2 2.1E+02 0.0045 29.7 9.4 77 160-241 106-182 (280)
359 KOG1103 Predicted coiled-coil 40.2 5.4E+02 0.012 28.3 13.5 19 236-254 262-280 (561)
360 PRK10803 tol-pal system protei 40.2 1.3E+02 0.0027 29.9 7.7 43 288-330 39-81 (263)
361 PF05010 TACC: Transforming ac 40.1 3.8E+02 0.0081 26.4 25.6 77 243-326 118-201 (207)
362 PRK15136 multidrug efflux syst 40.0 4.4E+02 0.0096 27.2 13.6 15 405-419 198-212 (390)
363 PF14915 CCDC144C: CCDC144C pr 39.9 4.7E+02 0.01 27.5 33.7 233 116-389 5-248 (305)
364 KOG1962 B-cell receptor-associ 39.8 4E+02 0.0086 26.7 10.9 58 217-274 149-206 (216)
365 PRK07739 flgK flagellar hook-a 39.7 4E+02 0.0087 28.8 11.9 93 241-345 117-223 (507)
366 PRK07521 flgK flagellar hook-a 39.5 4.3E+02 0.0092 28.4 12.0 68 277-344 124-205 (483)
367 PRK10476 multidrug resistance 39.5 4E+02 0.0087 26.6 12.3 20 370-389 191-210 (346)
368 PTZ00446 vacuolar sorting prot 39.3 3.8E+02 0.0081 26.2 14.2 57 216-274 78-140 (191)
369 PF06632 XRCC4: DNA double-str 39.2 1.5E+02 0.0032 31.2 8.3 70 237-306 134-211 (342)
370 PF02050 FliJ: Flagellar FliJ 39.2 2E+02 0.0043 23.0 12.9 16 334-349 62-77 (123)
371 PF07889 DUF1664: Protein of u 39.2 3.1E+02 0.0067 25.2 10.4 72 273-347 48-119 (126)
372 PF12709 Kinetocho_Slk19: Cent 39.0 1.4E+02 0.0031 26.0 6.9 40 161-200 47-86 (87)
373 PF10653 Phage-A118_gp45: Prot 38.6 22 0.00047 29.0 1.8 14 111-124 41-54 (62)
374 PRK10807 paraquat-inducible pr 37.8 4.6E+02 0.0099 29.0 12.1 46 239-284 476-523 (547)
375 TIGR01280 xseB exodeoxyribonuc 37.7 90 0.002 25.4 5.2 46 376-421 8-53 (67)
376 cd08915 V_Alix_like Protein-in 37.5 4.4E+02 0.0096 26.5 24.4 183 239-448 129-342 (342)
377 PF14362 DUF4407: Domain of un 37.3 4.2E+02 0.0091 26.2 15.0 34 160-193 132-165 (301)
378 PF02994 Transposase_22: L1 tr 36.7 61 0.0013 33.7 5.2 31 378-408 266-308 (370)
379 PF02970 TBCA: Tubulin binding 36.5 2.2E+02 0.0048 24.2 7.6 65 183-255 9-74 (90)
380 cd00632 Prefoldin_beta Prefold 36.4 2.7E+02 0.0058 23.7 8.8 22 313-334 26-47 (105)
381 PF10267 Tmemb_cc2: Predicted 36.3 5.8E+02 0.013 27.5 13.4 89 161-255 217-310 (395)
382 cd00176 SPEC Spectrin repeats, 36.2 2.8E+02 0.0061 23.8 18.1 20 115-134 2-21 (213)
383 KOG0993 Rab5 GTPase effector R 36.1 4.9E+02 0.011 28.9 11.7 58 168-225 432-489 (542)
384 PF03999 MAP65_ASE1: Microtubu 35.9 12 0.00026 40.9 0.0 142 211-352 25-177 (619)
385 PF10168 Nup88: Nuclear pore c 35.8 7.4E+02 0.016 28.5 18.6 30 297-326 686-715 (717)
386 PF01665 Rota_NSP3: Rotavirus 35.7 45 0.00098 34.2 3.9 40 227-266 195-235 (280)
387 PF08647 BRE1: BRE1 E3 ubiquit 35.7 2.8E+02 0.0061 23.7 8.5 55 256-331 19-73 (96)
388 PRK14064 exodeoxyribonuclease 35.6 98 0.0021 25.9 5.3 45 377-421 14-58 (75)
389 PF05531 NPV_P10: Nucleopolyhe 35.5 2.1E+02 0.0046 24.4 7.2 61 326-386 6-66 (75)
390 PF13870 DUF4201: Domain of un 35.1 3.6E+02 0.0078 24.8 20.0 127 219-363 42-174 (177)
391 TIGR02977 phageshock_pspA phag 35.0 4.1E+02 0.009 25.4 17.5 31 242-272 58-88 (219)
392 smart00503 SynN Syntaxin N-ter 34.8 2.6E+02 0.0056 23.0 11.1 72 313-384 4-75 (117)
393 PF15290 Syntaphilin: Golgi-lo 34.7 5.7E+02 0.012 27.0 14.7 33 168-200 87-119 (305)
394 PF06120 Phage_HK97_TLTM: Tail 34.7 5.5E+02 0.012 26.8 12.5 20 216-235 85-104 (301)
395 PF07956 DUF1690: Protein of U 34.4 1.5E+02 0.0032 27.4 6.7 77 265-350 39-119 (142)
396 PRK11519 tyrosine kinase; Prov 34.4 5.9E+02 0.013 28.6 12.5 31 124-154 267-297 (719)
397 KOG0995 Centromere-associated 34.3 7.6E+02 0.016 28.2 30.0 100 154-256 215-330 (581)
398 PF13747 DUF4164: Domain of un 34.0 2.5E+02 0.0054 24.0 7.6 55 195-249 15-69 (89)
399 KOG4360 Uncharacterized coiled 33.9 7.4E+02 0.016 28.2 12.8 47 306-352 201-247 (596)
400 PF09755 DUF2046: Uncharacteri 33.8 5.9E+02 0.013 26.9 27.9 87 108-206 46-135 (310)
401 COG2433 Uncharacterized conser 33.8 3.6E+02 0.0079 31.0 10.6 51 224-274 413-463 (652)
402 PF02994 Transposase_22: L1 tr 33.7 87 0.0019 32.6 5.7 16 404-419 172-187 (370)
403 PF12004 DUF3498: Domain of un 33.7 14 0.0003 40.4 0.0 62 136-197 374-435 (495)
404 cd09235 V_Alix Middle V-domain 33.4 5.4E+02 0.012 26.3 20.5 94 344-448 242-339 (339)
405 cd04784 HTH_CadR-PbrR Helix-Tu 33.3 2.9E+02 0.0064 24.0 8.1 34 154-187 77-110 (127)
406 KOG0995 Centromere-associated 33.3 7.8E+02 0.017 28.1 35.4 48 213-260 340-388 (581)
407 PF13815 Dzip-like_N: Iguana/D 33.2 3.3E+02 0.0071 23.9 8.4 60 115-174 57-116 (118)
408 PRK14063 exodeoxyribonuclease 32.9 1.2E+02 0.0025 25.5 5.3 44 377-420 13-56 (76)
409 PRK12715 flgK flagellar hook-a 32.8 7.8E+02 0.017 27.9 13.7 92 241-344 105-206 (649)
410 cd01108 HTH_CueR Helix-Turn-He 32.7 2E+02 0.0044 25.1 7.1 35 153-187 76-110 (127)
411 KOG1853 LIS1-interacting prote 32.7 6.1E+02 0.013 26.7 11.9 105 320-431 48-167 (333)
412 PF14073 Cep57_CLD: Centrosome 32.6 4.8E+02 0.01 25.5 14.4 31 352-382 61-91 (178)
413 KOG4591 Uncharacterized conser 32.6 75 0.0016 32.2 4.8 52 85-138 130-184 (280)
414 KOG4603 TBP-1 interacting prot 32.6 2.4E+02 0.0052 27.9 8.0 39 338-379 79-117 (201)
415 TIGR03752 conj_TIGR03752 integ 32.6 1.4E+02 0.0031 32.8 7.2 95 269-380 46-141 (472)
416 PF14193 DUF4315: Domain of un 32.5 73 0.0016 27.3 4.1 31 396-426 7-37 (83)
417 TIGR00634 recN DNA repair prot 32.3 6.9E+02 0.015 27.2 23.7 16 102-117 105-120 (563)
418 PF08738 Gon7: Gon7 family; I 32.2 64 0.0014 28.7 3.8 28 170-197 54-81 (103)
419 PF01442 Apolipoprotein: Apoli 32.0 3.4E+02 0.0073 23.5 22.6 23 143-165 3-25 (202)
420 cd07658 F-BAR_NOSTRIN The F-BA 31.9 4.9E+02 0.011 25.4 20.5 35 111-145 13-47 (239)
421 PF07798 DUF1640: Protein of u 31.5 4.3E+02 0.0093 24.5 13.7 27 241-267 125-151 (177)
422 PF09486 HrpB7: Bacterial type 30.9 4.7E+02 0.01 24.8 13.9 40 313-352 18-57 (158)
423 PF14282 FlxA: FlxA-like prote 30.6 2.1E+02 0.0046 24.9 6.7 55 368-422 18-76 (106)
424 cd04770 HTH_HMRTR Helix-Turn-H 30.4 3.5E+02 0.0076 23.2 9.1 34 153-186 76-109 (123)
425 PRK06798 fliD flagellar cappin 30.1 2.5E+02 0.0055 30.0 8.5 98 82-186 328-427 (440)
426 PRK08724 fliD flagellar cappin 30.0 3.5E+02 0.0076 31.1 9.9 56 131-186 617-672 (673)
427 PF11068 YlqD: YlqD protein; 29.8 2.5E+02 0.0054 25.8 7.3 56 142-204 24-83 (131)
428 cd08812 CARD_RIG-I_like Caspas 29.4 66 0.0014 27.1 3.3 39 87-132 32-72 (88)
429 PF10226 DUF2216: Uncharacteri 29.3 3.6E+02 0.0078 26.8 8.7 70 178-264 17-86 (195)
430 PF06295 DUF1043: Protein of u 29.3 3.8E+02 0.0083 24.0 8.3 54 136-189 23-76 (128)
431 PRK09841 cryptic autophosphory 29.0 8.8E+02 0.019 27.4 14.8 34 121-154 264-297 (726)
432 TIGR02338 gimC_beta prefoldin, 29.0 3.8E+02 0.0082 23.1 9.2 28 309-336 26-53 (110)
433 PRK14067 exodeoxyribonuclease 28.8 1.5E+02 0.0032 25.2 5.3 45 377-421 15-59 (80)
434 PRK03947 prefoldin subunit alp 28.7 4.1E+02 0.0089 23.4 11.3 33 314-346 105-137 (140)
435 cd01107 HTH_BmrR Helix-Turn-He 28.6 3.7E+02 0.008 22.9 8.0 33 155-187 74-106 (108)
436 PRK07737 fliD flagellar cappin 28.5 4.9E+02 0.011 28.3 10.4 107 81-187 375-497 (501)
437 COG3206 GumC Uncharacterized p 28.4 7.1E+02 0.015 26.1 24.3 31 322-352 329-363 (458)
438 PF12252 SidE: Dot/Icm substra 28.4 1.2E+03 0.027 28.9 15.7 169 89-317 1137-1309(1439)
439 PF04871 Uso1_p115_C: Uso1 / p 28.2 4.6E+02 0.01 23.9 13.1 26 271-296 80-105 (136)
440 PF12004 DUF3498: Domain of un 28.1 20 0.00042 39.3 0.0 83 118-200 377-463 (495)
441 KOG4603 TBP-1 interacting prot 28.1 2.8E+02 0.006 27.5 7.6 52 139-190 87-143 (201)
442 PF08826 DMPK_coil: DMPK coile 28.0 2.5E+02 0.0055 22.9 6.3 48 276-330 12-59 (61)
443 KOG4196 bZIP transcription fac 27.9 3E+02 0.0066 25.9 7.5 54 196-249 65-118 (135)
444 PF02183 HALZ: Homeobox associ 27.9 1.8E+02 0.0038 22.3 5.1 17 311-327 20-36 (45)
445 PF12001 DUF3496: Domain of un 27.8 2.8E+02 0.0061 25.1 7.1 55 319-389 9-63 (111)
446 PRK10722 hypothetical protein; 27.7 1.7E+02 0.0036 29.9 6.3 51 332-386 150-200 (247)
447 PF04012 PspA_IM30: PspA/IM30 27.7 5.2E+02 0.011 24.3 15.7 73 124-196 66-138 (221)
448 PRK00977 exodeoxyribonuclease 27.5 1.6E+02 0.0034 24.8 5.2 46 376-421 17-62 (80)
449 PRK03947 prefoldin subunit alp 27.3 4.3E+02 0.0094 23.2 12.2 43 204-246 93-135 (140)
450 PF11802 CENP-K: Centromere-as 27.1 7.2E+02 0.016 25.8 11.1 128 272-416 93-225 (268)
451 PF03357 Snf7: Snf7; InterPro 26.9 4.3E+02 0.0094 23.1 11.3 77 194-277 41-117 (171)
452 PRK06664 fliD flagellar hook-a 26.9 3.8E+02 0.0083 30.4 9.6 78 109-186 578-655 (661)
453 PRK00888 ftsB cell division pr 26.8 2.1E+02 0.0046 25.0 6.1 15 169-183 47-61 (105)
454 COG3524 KpsE Capsule polysacch 26.8 2.5E+02 0.0055 30.0 7.6 70 281-353 222-293 (372)
455 PHA02414 hypothetical protein 26.7 1.6E+02 0.0035 26.7 5.4 58 139-197 5-62 (111)
456 PRK06945 flgK flagellar hook-a 26.6 8.9E+02 0.019 27.4 12.2 91 243-345 108-213 (651)
457 PF14931 IFT20: Intraflagellar 26.6 4.9E+02 0.011 23.6 12.2 75 151-232 26-107 (120)
458 PF05103 DivIVA: DivIVA protei 26.5 70 0.0015 27.3 3.1 30 210-239 23-52 (131)
459 PRK02119 hypothetical protein; 26.3 2.2E+02 0.0048 23.5 5.8 39 150-188 7-48 (73)
460 PF01519 DUF16: Protein of unk 26.2 3.4E+02 0.0074 24.5 7.3 13 234-246 86-98 (102)
461 PRK11578 macrolide transporter 26.1 5.9E+02 0.013 25.7 9.9 7 295-301 98-104 (370)
462 TIGR03495 phage_LysB phage lys 26.1 4E+02 0.0087 24.8 8.0 22 253-274 18-39 (135)
463 PF14931 IFT20: Intraflagellar 26.0 5E+02 0.011 23.5 10.6 89 105-197 22-117 (120)
464 PRK11677 hypothetical protein; 26.0 3.6E+02 0.0078 25.0 7.7 53 136-188 27-79 (134)
465 PF05384 DegS: Sensor protein 26.0 5.7E+02 0.012 24.2 16.2 50 297-346 7-56 (159)
466 PF14257 DUF4349: Domain of un 26.0 3.6E+02 0.0078 26.1 8.1 32 204-235 161-192 (262)
467 PF03245 Phage_lysis: Bacterio 25.8 2.9E+02 0.0064 24.7 6.9 61 53-130 61-121 (125)
468 PF06295 DUF1043: Protein of u 25.6 3.9E+02 0.0083 24.0 7.7 43 310-352 25-68 (128)
469 PF14282 FlxA: FlxA-like prote 25.4 4.5E+02 0.0098 22.8 7.8 32 162-193 50-81 (106)
470 PRK14070 exodeoxyribonuclease 25.3 1.9E+02 0.0041 24.1 5.2 45 377-421 3-47 (69)
471 PHA03011 hypothetical protein; 25.2 4.2E+02 0.0091 24.3 7.7 58 288-352 56-113 (120)
472 PRK06231 F0F1 ATP synthase sub 24.8 6.3E+02 0.014 24.3 15.1 61 127-187 75-135 (205)
473 PF05529 Bap31: B-cell recepto 24.8 5.7E+02 0.012 23.7 11.0 43 108-154 99-141 (192)
474 PF10018 Med4: Vitamin-D-recep 24.7 2.6E+02 0.0057 26.3 6.7 48 340-387 14-61 (188)
475 PF05335 DUF745: Protein of un 24.7 6.5E+02 0.014 24.4 11.6 89 240-332 78-166 (188)
476 PRK14069 exodeoxyribonuclease 24.6 1.8E+02 0.0039 25.7 5.3 46 376-421 15-60 (95)
477 COG4372 Uncharacterized protei 24.6 1E+03 0.022 26.5 24.5 108 174-295 78-185 (499)
478 PF06248 Zw10: Centromere/kine 24.5 9.5E+02 0.021 26.2 18.2 58 218-275 75-136 (593)
479 PRK00409 recombination and DNA 24.4 1.1E+03 0.025 27.1 15.1 109 133-247 508-625 (782)
480 PRK00295 hypothetical protein; 24.2 3.4E+02 0.0073 22.2 6.4 21 357-377 7-27 (68)
481 PF12252 SidE: Dot/Icm substra 24.1 1.5E+03 0.032 28.4 24.3 213 104-331 1003-1251(1439)
482 PRK07720 fliJ flagellar biosyn 24.0 5.1E+02 0.011 22.9 11.6 94 292-385 5-101 (146)
483 PRK04098 sec-independent trans 24.0 3.3E+02 0.0072 26.1 7.2 52 238-289 56-109 (158)
484 PRK14068 exodeoxyribonuclease 23.9 2.1E+02 0.0045 24.1 5.3 46 376-421 13-58 (76)
485 PF07544 Med9: RNA polymerase 23.7 1.7E+02 0.0036 24.5 4.7 29 356-384 46-74 (83)
486 PF01806 Paramyxo_P: Paramyxov 23.7 1.2E+02 0.0027 30.5 4.5 38 208-248 58-95 (248)
487 PF03915 AIP3: Actin interacti 23.6 9.4E+02 0.02 26.2 11.3 105 277-383 171-313 (424)
488 PF05565 Sipho_Gp157: Siphovir 23.1 6E+02 0.013 23.5 10.4 46 191-249 39-84 (162)
489 PF05266 DUF724: Protein of un 23.1 6.9E+02 0.015 24.1 14.7 56 219-274 124-179 (190)
490 PF03938 OmpH: Outer membrane 23.0 5.2E+02 0.011 22.7 11.5 72 212-283 43-124 (158)
491 PF02181 FH2: Formin Homology 23.0 2.7E+02 0.0059 27.9 6.9 37 212-248 309-345 (370)
492 PRK13169 DNA replication intia 23.0 3.2E+02 0.007 24.6 6.6 54 276-329 2-55 (110)
493 PRK06975 bifunctional uroporph 22.9 1.1E+03 0.024 26.5 12.9 83 155-240 377-459 (656)
494 PF05615 THOC7: Tho complex su 22.8 5.4E+02 0.012 22.8 12.5 79 165-250 41-119 (139)
495 PF05130 FlgN: FlgN protein; 22.8 4.4E+02 0.0096 21.8 11.6 29 217-245 82-110 (143)
496 TIGR02971 heterocyst_DevB ABC 22.8 7.3E+02 0.016 24.3 17.7 32 216-247 94-125 (327)
497 PF04420 CHD5: CHD5-like prote 22.8 1.8E+02 0.0038 27.0 5.1 57 316-384 39-95 (161)
498 PF08537 NBP1: Fungal Nap bind 22.8 9.4E+02 0.02 25.6 12.1 115 297-441 126-243 (323)
499 PRK14066 exodeoxyribonuclease 22.8 2.2E+02 0.0049 23.8 5.3 45 376-420 11-55 (75)
500 PRK08871 flgK flagellar hook-a 22.7 6.4E+02 0.014 28.5 10.2 102 241-343 108-209 (626)
No 1
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=99.96 E-value=7.3e-29 Score=263.63 Aligned_cols=283 Identities=20% Similarity=0.204 Sum_probs=260.1
Q ss_pred HHHHHHHHHHHHHH-------HhHHHhhHHHHHHhhHHHHH--HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHH
Q 012561 172 IVELRKSFASLQEK-------LAKEESDKLAALDSLAREKE--TRLNMERSHASLSEDLGKAQEELQSANQRIASINDMY 242 (461)
Q Consensus 172 i~ELr~~~~SLqe~-------L~keeseKl~a~~s~~kEkE--aR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmy 242 (461)
+..++..+.+.+.. +.++.....++++.+..+.. +.........++..++.+.+.+.......+.++.+++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (670)
T KOG0239|consen 23 NPKKRFELARVYSPSVGQPSLFSDVQPFVQSALEGLNVKAGLTYTMEGSNQPGGLLARLFKELIDLANSDKTSNVVEAYN 102 (670)
T ss_pred ccccccCccccccccccccccCCccccchhhhhhhhhcchhhhhhhhhhcCcchhHHHhhhhcccccccCCCchhHHHHH
Confidence 34455555555554 66777788888888888755 6777788888999999999999988888888999999
Q ss_pred HHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHH--HhHhhHH---HHHHhhHHHHH
Q 012561 243 KLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLS--TYKASQD---EAMRQKDALVH 317 (461)
Q Consensus 243 KRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~--~skaSq~---Ea~kQK~~L~~ 317 (461)
.++..|++++|+|++++..++....+.+++.+..+.++...+.+|+.++..+...+. ..+.+++ .+.++++.+.+
T Consensus 103 ~~~~~~~~~~q~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 182 (670)
T KOG0239|consen 103 ERLRDLLSELQSNLSELNMALLESVEELSQAEEDNPSIFVSLLELAQENRGLYLDLSKVTPENSLSLLDLALKESLKLES 182 (670)
T ss_pred HHHhhhccccccchhhhhhhhhhhhHhhhhhhcccccHHHHHHHHHhhhccccccccccchhhhHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999998 7888888 99999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH-------hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhch
Q 012561 318 EVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE-------LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDL 390 (461)
Q Consensus 318 Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE-------l~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDl 390 (461)
|+..+..+|..|+++.++...+...+..+...+.+ +..++..|+..|+++.+.|..|+++|...+.++...+-
T Consensus 183 ~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~ 262 (670)
T KOG0239|consen 183 DLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQELEELKAELKELND 262 (670)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999997777776666 78889999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHhHHHHHHHHHhHHHHhhhhhhhH---HhHHhhhhhhhhhcccceeeeeeccCCCCC
Q 012561 391 SALETKTEFEGQKKLINELRNHLEDAEYKLIEGE---KLRKRLHNTILELEVNLSSSALFRRGLKDI 454 (461)
Q Consensus 391 sa~etrte~E~Qk~~i~eLq~RLadaE~kiiEGE---kLRKKLHNTILELKGNIRv~crvrp~l~~~ 454 (461)
...+.+.+|+++.+.+..++..|++++..+++.. .+||+|||+|+||||||||||||||++|+-
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnIRV~CRvRP~~~~e 329 (670)
T KOG0239|consen 263 QVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNIRVFCRVRPLLPSE 329 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceEEEEecCCCccc
Confidence 9999999999999999999999999999999999 999999999999999999999999999864
No 2
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=99.92 E-value=7.7e-23 Score=217.43 Aligned_cols=288 Identities=26% Similarity=0.329 Sum_probs=263.9
Q ss_pred HHHHHHHHhhhhhHH---------HHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHH
Q 012561 124 LCIKWFQELEGDYAF---------EHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKL 194 (461)
Q Consensus 124 ~CIrWfqelE~~y~~---------EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl 194 (461)
.+|=-+|+-|.+.-. .-.|.+.-|..-+.|+-.+.++||.++.+++..+..|+.+|+|||+.+.+...++-
T Consensus 276 t~IL~LQEeEL~~Kvqp~d~Le~e~~~K~q~LL~~WREKVFaLmVQLkaQeleh~~~~~qL~~qVAsLQeev~sq~qEqa 355 (739)
T PF07111_consen 276 TDILTLQEEELCRKVQPSDPLEPEFSRKCQQLLSRWREKVFALMVQLKAQELEHRDSVKQLRGQVASLQEEVASQQQEQA 355 (739)
T ss_pred HHHHHHHHHHHhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677887766544 37899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhh-
Q 012561 195 AALDSLAREKETRLNMERSHA-SLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKR- 272 (461)
Q Consensus 195 ~a~~s~~kEkEaR~~~E~~~~-~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r- 272 (461)
.+..|+ .+|+|+..+|++++ +|..||.+++.+...+++|+.+.++.+|.+.+|-+|.|++ |++-..++..+.+|
T Consensus 356 iLq~SL-qDK~AElevERv~sktLQ~ELsrAqea~~~lqqq~~~aee~Lk~v~eav~S~q~~---L~s~ma~ve~a~aRL 431 (739)
T PF07111_consen 356 ILQHSL-QDKAAELEVERVGSKTLQAELSRAQEARRRLQQQTASAEEQLKLVSEAVSSSQQW---LESQMAKVEQALARL 431 (739)
T ss_pred HHHHHH-hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 999999 99999999999999 7999999999999999999999999999999999999995 88888887776555
Q ss_pred --hhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 012561 273 --GEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKH 350 (461)
Q Consensus 273 --~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~y 350 (461)
+....+..+.++.+++| +++-..|+...+..++..+--++..|+.||||+|++|||..++++ |++.+...
T Consensus 432 ~sL~~RlSyAvrrv~tiqG-------L~Ark~Alaqlrqe~~~~~pp~~~dL~~ELqqLReERdRl~aeLq-lSa~liqq 503 (739)
T PF07111_consen 432 PSLSNRLSYAVRRVHTIQG-------LMARKLALAQLRQEQCPPSPPSVTDLSLELQQLREERDRLDAELQ-LSARLIQQ 503 (739)
T ss_pred HHHhHHHHHHhcccchhHH-------HHHHHHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHHHHHHHHH-HhHHHHHH
Confidence 45688889999999999 788888999999999998888999999999999999999999998 77766644
Q ss_pred H-----H--------hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHH-HHHHhHHHH
Q 012561 351 K-----E--------LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLIN-ELRNHLEDA 416 (461)
Q Consensus 351 k-----E--------l~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~-eLq~RLada 416 (461)
+ | |..+.+.||..|.-+.+.+..+..||.+|..++..++.++.+.|++|..|+..+. .||+|.++.
T Consensus 504 eV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~QQ~~y~~alqekvsev 583 (739)
T PF07111_consen 504 EVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQQQEVYERALQEKVSEV 583 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 3 8889999999999999999999999999999999999999999999999998887 999999999
Q ss_pred hhhhhhh
Q 012561 417 EYKLIEG 423 (461)
Q Consensus 417 E~kiiEG 423 (461)
|.++.|+
T Consensus 584 Esrl~E~ 590 (739)
T PF07111_consen 584 ESRLREQ 590 (739)
T ss_pred HHHHHHH
Confidence 8887764
No 3
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.04 E-value=1.4e-05 Score=86.86 Aligned_cols=11 Identities=9% Similarity=0.329 Sum_probs=6.5
Q ss_pred cHHHHHHHHhh
Q 012561 88 TREDVEALLSE 98 (461)
Q Consensus 88 tredVeALLnE 98 (461)
|..||..+|..
T Consensus 118 ~~~~~~~~l~~ 128 (1164)
T TIGR02169 118 RLSEIHDFLAA 128 (1164)
T ss_pred cHHHHHHHHHH
Confidence 55666666543
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.01 E-value=1.2e-05 Score=87.26 Aligned_cols=23 Identities=9% Similarity=0.261 Sum_probs=9.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHhhh
Q 012561 112 CENMMDYIKRLRLCIKWFQELEG 134 (461)
Q Consensus 112 ~EqM~dyIKrLr~CIrWfqelE~ 134 (461)
+-.+..|-+++.-+..=+..+++
T Consensus 162 ~~g~~~~~~~~~~~~~~l~~~~~ 184 (1164)
T TIGR02169 162 IAGVAEFDRKKEKALEELEEVEE 184 (1164)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433
No 5
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.00 E-value=1.7e-05 Score=85.53 Aligned_cols=9 Identities=0% Similarity=0.372 Sum_probs=4.8
Q ss_pred cHHHHHHHH
Q 012561 88 TREDVEALL 96 (461)
Q Consensus 88 tredVeALL 96 (461)
.-.+|..++
T Consensus 142 ~q~~~~~~~ 150 (1179)
T TIGR02168 142 EQGKISEII 150 (1179)
T ss_pred ecccHHHHH
Confidence 345555555
No 6
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.92 E-value=5.1e-05 Score=81.95 Aligned_cols=11 Identities=18% Similarity=0.443 Sum_probs=7.2
Q ss_pred cHHHHHHHHhh
Q 012561 88 TREDVEALLSE 98 (461)
Q Consensus 88 tredVeALLnE 98 (461)
+..+|..+|..
T Consensus 120 ~~~~~~~~l~~ 130 (1179)
T TIGR02168 120 RLKDIQDLFLD 130 (1179)
T ss_pred cHHHHHHHHhc
Confidence 45677777654
No 7
>PRK03918 chromosome segregation protein; Provisional
Probab=98.82 E-value=0.0001 Score=79.57 Aligned_cols=130 Identities=22% Similarity=0.289 Sum_probs=59.3
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHH
Q 012561 124 LCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLARE 203 (461)
Q Consensus 124 ~CIrWfqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kE 203 (461)
....|+.++...|-.+.+.+...+...+.....+. .++...+++..-+.+++.++..|++.+..-+.+ +..++....+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~i~~~l~-~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~-l~~l~~~~~~ 239 (880)
T PRK03918 162 NAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIK-EKEKELEEVLREINEISSELPELREELEKLEKE-VKELEELKEE 239 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 33445556666666666666666644433322222 233344444455555555555555444433221 1111111111
Q ss_pred ----HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhh
Q 012561 204 ----KETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHY 255 (461)
Q Consensus 204 ----kEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQY 255 (461)
.......+.....+.+++...+.++..+.+++..++...+++.+|..-+..|
T Consensus 240 ~~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~~~~~~l~~~~~~~ 295 (880)
T PRK03918 240 IEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEY 295 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122233333444445555556666666666665555555555544433333
No 8
>PRK02224 chromosome segregation protein; Provisional
Probab=98.77 E-value=0.00019 Score=77.92 Aligned_cols=42 Identities=14% Similarity=0.264 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 012561 205 ETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQ 246 (461)
Q Consensus 205 EaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQ 246 (461)
......+.....+...+..++..+..+..+|..+++-+..++
T Consensus 251 ~~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le 292 (880)
T PRK02224 251 EELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELE 292 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444455554444444555555544444444
No 9
>PRK02224 chromosome segregation protein; Provisional
Probab=98.73 E-value=0.00071 Score=73.58 Aligned_cols=76 Identities=17% Similarity=0.155 Sum_probs=34.1
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHc---hHHHHHHHHHHHHHHHHHHHHHHhH
Q 012561 113 ENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRN---KEEELNLIIVELRKSFASLQEKLAK 188 (461)
Q Consensus 113 EqM~dyIKrLr~CIrWfqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~---k~eEL~~~i~ELr~~~~SLqe~L~k 188 (461)
+.+.+.++.|+-.+.|+..--..+-...+.++..++..+....+++..+.. ..+++...+.+++..+..|.+.+..
T Consensus 352 ~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~ 430 (880)
T PRK02224 352 DDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAE 430 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444443444444444455555555544444444431 2233344444444444444444443
No 10
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.68 E-value=0.00019 Score=81.54 Aligned_cols=154 Identities=23% Similarity=0.352 Sum_probs=74.9
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH----h
Q 012561 278 SAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE----L 353 (461)
Q Consensus 278 ~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE----l 353 (461)
..+-+.+..+.....+|...+........+.-.+.+.+..++..+-.+|...++.+...-.++..+..++..+++ +
T Consensus 831 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 910 (1163)
T COG1196 831 EELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKL 910 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333334444444444445555555555555555555555555555444 3
Q ss_pred hhhhhHHHHHHhhHHHHHHH----------------HHHHHHHHHhh---hhhhchhhhhhhhhhHHhHHHHHHHHHhHH
Q 012561 354 AVSSEDLEARCASQSNQIRS----------------LSDQLAAAEEK---LEVSDLSALETKTEFEGQKKLINELRNHLE 414 (461)
Q Consensus 354 ~~k~~~LEetCssQ~eqI~~----------------Lq~QLa~A~eK---Lk~aDlsa~etrte~E~Qk~~i~eLq~RLa 414 (461)
..+.+.|+..|.....++.. ++..+...+.. |...++ -+..+|++-+..+.+|...++
T Consensus 911 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~le~~i~~lg~VN~---~Aiee~e~~~~r~~~l~~~~~ 987 (1163)
T COG1196 911 RERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNL---RAIEEYEEVEERYEELKSQRE 987 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhccCCCh---hHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333222222 33333333333 555554 455578888888888887777
Q ss_pred HHhhhhhhhHHhHHhhhhhhhhhcccc
Q 012561 415 DAEYKLIEGEKLRKRLHNTILELEVNL 441 (461)
Q Consensus 415 daE~kiiEGEkLRKKLHNTILELKGNI 441 (461)
|.+ .=+++|+++|-+++-.+
T Consensus 988 dl~-------~a~~~l~~~i~~~d~~~ 1007 (1163)
T COG1196 988 DLE-------EAKEKLLEVIEELDKEK 1007 (1163)
T ss_pred HHH-------HHHHHHHHHHHHHHHHH
Confidence 743 33566777776666544
No 11
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.51 E-value=0.0013 Score=69.61 Aligned_cols=281 Identities=25% Similarity=0.315 Sum_probs=174.8
Q ss_pred HHHHhhhhhHHH-HHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHH-------------------------------
Q 012561 128 WFQELEGDYAFE-HERLRNALELSEQKCAEMELALRNKEEELNLIIVEL------------------------------- 175 (461)
Q Consensus 128 WfqelE~~y~~E-qekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~EL------------------------------- 175 (461)
++.+++.+...+ ...++..|+....+|+..-..|..--+||..+-.|+
T Consensus 98 r~~e~e~~~~~~~~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L 177 (522)
T PF05701_consen 98 RAKELEQGIAEEASVAWKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEEL 177 (522)
T ss_pred HHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555543 344777788888888887777777666665433322
Q ss_pred HHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhh
Q 012561 176 RKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHY 255 (461)
Q Consensus 176 r~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQY 255 (461)
...+..|.+.|... +++.+++.....+.....+.....+..+|+.+..++..++.++.+..|+-.-|-.-+.-+
T Consensus 178 ~~Ei~~lke~l~~~---~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l--- 251 (522)
T PF05701_consen 178 SKEIIALKESLESA---KLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASAEL--- 251 (522)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 22222233322222 222222222222223333344455556666667777777777766666655555543333
Q ss_pred hhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhh
Q 012561 256 NTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDH 335 (461)
Q Consensus 256 NSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr 335 (461)
..||..+....+ .++..+- .--.....+.....++...|+.++.+.+.+...-..|..-|.+||.||.+++.+=.+
T Consensus 252 -~~Lq~El~~~~~--~~l~~~~-~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~ 327 (522)
T PF05701_consen 252 -ESLQAELEAAKE--SKLEEEA-EAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELER 327 (522)
T ss_pred -HHHHHHHHHHHH--HHHhhhH-HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666655 2222211 222344455566788889999999999999988888888888888888887766444
Q ss_pred -------hHHHHHHHHHHHHHhHH-h---hhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHH
Q 012561 336 -------QLSQVQALTAEVIKHKE-L---AVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKK 404 (461)
Q Consensus 336 -------~~~QvqsL~aE~~~ykE-l---~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~ 404 (461)
.-+.|++|.+++.+.+- | .......-+..+.-...++.+......|+.....+-.-....+.+.+.-+.
T Consensus 328 lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka 407 (522)
T PF05701_consen 328 LKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKA 407 (522)
T ss_pred HHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777766 2 222222223455566677777778888888888877788888899999999
Q ss_pred HHHHHHHhHHHHhh
Q 012561 405 LINELRNHLEDAEY 418 (461)
Q Consensus 405 ~i~eLq~RLadaE~ 418 (461)
.|...+.||.-+-.
T Consensus 408 ~i~t~E~rL~aa~k 421 (522)
T PF05701_consen 408 AIKTAEERLEAALK 421 (522)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888876543
No 12
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.48 E-value=0.0029 Score=76.06 Aligned_cols=313 Identities=20% Similarity=0.247 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHH---HHHHHHHHHHhHHH
Q 012561 116 MDYIKRLRLCIKWFQELEGD--YAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELR---KSFASLQEKLAKEE 190 (461)
Q Consensus 116 ~dyIKrLr~CIrWfqelE~~--y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr---~~~~SLqe~L~kee 190 (461)
+-..-++|-=|.|-..=|.- --.|+-+|+..++..+....++|..+..-..|.+....+|. ..++..++.+....
T Consensus 821 ~~Lf~kvkPLL~~~~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~ 900 (1930)
T KOG0161|consen 821 WRLFTKVKPLLKVTKTEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLR 900 (1930)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444332221 12344455556666666655555555444444444444432 23444455555555
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHH
Q 012561 191 SDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESI 270 (461)
Q Consensus 191 seKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~ 270 (461)
++|..+=..+....+.-...+.--..|.-+..+++.++.....++..++-+...++.=...+..=+++|+.++..-.+.+
T Consensus 901 ~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~ 980 (1930)
T KOG0161|consen 901 AEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENI 980 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555544444444444444444444444555555555555555544444444333444444555555555555555
Q ss_pred hhhhhHHHHHHHhhhhhhhhhhhHHHHH----------HHhHhhHHHHHHhhHHHHHHHH----HHHHHHhhhhhhhhhh
Q 012561 271 KRGEKEKSAIVENLSTLRGQYISLQEQL----------STYKASQDEAMRQKDALVHEVA----SMRVELQQVRDDRDHQ 336 (461)
Q Consensus 271 ~r~eKEK~tivEnls~LrG~~~SLq~QL----------~~skaSq~Ea~kQK~~L~~Ev~----~LR~ELqqvRdDRDr~ 336 (461)
.++.|||..+-+.+..|-....+..+++ ...-......+.+......|++ .|.++|+-.++.=+-.
T Consensus 981 ~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~ 1060 (1930)
T KOG0161|consen 981 SKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEEL 1060 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 5555555543333333222211111111 1111111111222222222222 3333332222222222
Q ss_pred HHHHHHHHHHHHHhHH----hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHh
Q 012561 337 LSQVQALTAEVIKHKE----LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNH 412 (461)
Q Consensus 337 ~~QvqsL~aE~~~ykE----l~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~R 412 (461)
-.++..|...+.+... +..+...+..--+.-..+|+.|+.++.-..+.|.----+....-..+.+....+.+|+.+
T Consensus 1061 ~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~ 1140 (1930)
T KOG0161|consen 1061 KKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEE 1140 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333322 444555555555555556666666666666666665555555566666666777777888
Q ss_pred HHHHhhhhhhhHHhHH
Q 012561 413 LEDAEYKLIEGEKLRK 428 (461)
Q Consensus 413 LadaE~kiiEGEkLRK 428 (461)
|.++.-...--..+++
T Consensus 1141 Lee~~~~t~~q~e~~~ 1156 (1930)
T KOG0161|consen 1141 LEEQGGTTAAQLELNK 1156 (1930)
T ss_pred HHHHhhhHHHHHHHHH
Confidence 8777443333333333
No 13
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.45 E-value=0.0026 Score=73.37 Aligned_cols=197 Identities=12% Similarity=0.126 Sum_probs=106.6
Q ss_pred HhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhH-----HHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhh
Q 012561 214 HASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSS-----LQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLR 288 (461)
Q Consensus 214 ~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTS-----LQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~Lr 288 (461)
+........+++.++..++..+..++.+++-+++|..+ |.. +..++......+..++.+...+-+.|..|+
T Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~~~qL~~----~e~el~~~~~~ie~le~e~~~l~~~i~~l~ 1004 (1311)
T TIGR00606 929 ISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQ----KETELNTVNAQLEECEKHQEKINEDMRLMR 1004 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455666677777777777777777777777664 332 233333334455555555555555555544
Q ss_pred hhhhhHHHHHHHhHhhHHHH--HHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhh
Q 012561 289 GQYISLQEQLSTYKASQDEA--MRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCAS 366 (461)
Q Consensus 289 G~~~SLq~QL~~skaSq~Ea--~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCss 366 (461)
-..+.++..-...+.-.+-. ..+-..+..++..|..++.++ ||++.......|..++.. |....+.+-..+..
T Consensus 1005 kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~--~~~~~~~e~~~l~~~~~~---l~~~~a~l~g~~k~ 1079 (1311)
T TIGR00606 1005 QDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQM--QVLQMKQEHQKLEENIDL---IKRNHVLALGRQKG 1079 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 44433333222222211111 233344445555555444443 333333333333332221 33344455555555
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhh
Q 012561 367 QSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLI 421 (461)
Q Consensus 367 Q~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~kii 421 (461)
=..||..|+.+|.. ...+-++--+..++.+...-+..|.||..=-.--+..|+
T Consensus 1080 le~qi~~l~~eL~e--~~yk~a~~ryrka~i~~~~~~~~~~d~~~~~~~~~~~~~ 1132 (1311)
T TIGR00606 1080 YEKEIKHFKKELRE--PQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIM 1132 (1311)
T ss_pred HHHHHHHHHHHHcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55688888888754 456677777888888888888888888766555555554
No 14
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.43 E-value=0.008 Score=68.73 Aligned_cols=91 Identities=14% Similarity=0.300 Sum_probs=48.7
Q ss_pred HHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHH
Q 012561 294 LQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRS 373 (461)
Q Consensus 294 Lq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~ 373 (461)
+...+...+....+...+...+.+++..|+.++++..+.+++...+...+..++....+ +...+...|.-...+|..
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 450 (1163)
T COG1196 374 LEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEA---ELEELQTELEELNEELEE 450 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhhHHHHHHHHHH
Confidence 33344444455555555555555666666666666666665555555555555544433 444445555555555555
Q ss_pred HHHHHHHHHhhhhh
Q 012561 374 LSDQLAAAEEKLEV 387 (461)
Q Consensus 374 Lq~QLa~A~eKLk~ 387 (461)
|+.++......+.-
T Consensus 451 l~~~~~~~~~~~~~ 464 (1163)
T COG1196 451 LEEQLEELRDRLKE 464 (1163)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555554443
No 15
>PRK03918 chromosome segregation protein; Provisional
Probab=98.42 E-value=0.0055 Score=66.43 Aligned_cols=78 Identities=15% Similarity=0.205 Sum_probs=36.2
Q ss_pred HHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh---------HHhhhhhhHHHHHHhhHHHHHHHHHHHH
Q 012561 308 AMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKH---------KELAVSSEDLEARCASQSNQIRSLSDQL 378 (461)
Q Consensus 308 a~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~y---------kEl~~k~~~LEetCssQ~eqI~~Lq~QL 378 (461)
+..+.+.+..++.-++.+|...+..-...-.++..|..++... ..+..+...++..++.-...|..++.++
T Consensus 610 ~~~~l~~~~~~l~~~~~~l~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i 689 (880)
T PRK03918 610 AEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRR 689 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443333333333333333222 2244455555555555555566666555
Q ss_pred HHHHhhh
Q 012561 379 AAAEEKL 385 (461)
Q Consensus 379 a~A~eKL 385 (461)
...+..+
T Consensus 690 ~~l~~~i 696 (880)
T PRK03918 690 EEIKKTL 696 (880)
T ss_pred HHHHHHH
Confidence 5555444
No 16
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.41 E-value=0.0045 Score=74.52 Aligned_cols=326 Identities=21% Similarity=0.280 Sum_probs=232.0
Q ss_pred ccHHHHHHHHhhhhhccCCCChHHhhHhHHHHHHHHHHHHHHHHHhh-hhhHHH--------------------------
Q 012561 87 FTREDVEALLSEKMRYKNKFNYKERCENMMDYIKRLRLCIKWFQELE-GDYAFE-------------------------- 139 (461)
Q Consensus 87 FtredVeALLnEKmk~k~KfdyKgr~EqM~dyIKrLr~CIrWfqelE-~~y~~E-------------------------- 139 (461)
|-|--|.|.|-+ .|-+...+.|-.+-++||||.-.= ...-.+
T Consensus 755 FfkaGvla~LEe-----------~Rd~~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w~W~~L 823 (1930)
T KOG0161|consen 755 FFKAGVLAHLEE-----------MRDEKLSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTWPWWRL 823 (1930)
T ss_pred eehHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHH
Confidence 445555555543 378889999999999999986432 222222
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHchHHHHHHH---HHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhh
Q 012561 140 HERLRNALELSEQKCAEMELALRNKEEELNLI---IVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHAS 216 (461)
Q Consensus 140 qekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~---i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~ 216 (461)
-.+++-.|. ....+-+|..+.+++... +......-..|+++..+...++.+....+..|++....++.....
T Consensus 824 f~kvkPLL~-----~~~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~ 898 (1930)
T KOG0161|consen 824 FTKVKPLLK-----VTKTEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLER 898 (1930)
T ss_pred HHHHHHHHH-----hhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222232 233455666666665544 444555666788889999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHH
Q 012561 217 LSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQE 296 (461)
Q Consensus 217 LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~ 296 (461)
+..+...++.++.-.+.++...++.+.-|+-=...+++=-..|...++...-++.+++.||.+....+..|+|...++.+
T Consensus 899 ~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e 978 (1930)
T KOG0161|consen 899 LRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDE 978 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888888877777777777777777777777778889999999999999999999988887
Q ss_pred HHHH---hHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhh----hhhHHHHHHhhHHH
Q 012561 297 QLST---YKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAV----SSEDLEARCASQSN 369 (461)
Q Consensus 297 QL~~---skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~----k~~~LEetCssQ~e 369 (461)
+++. .+..++++++ .|...+...+..+.+...-.-+.-.+++.+...+..=+.... ..-.||.-|..-++
T Consensus 979 ~~~kL~kekk~lEe~~~---~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e 1055 (1930)
T KOG0161|consen 979 NISKLSKEKKELEERIR---ELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQE 1055 (1930)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7654 3444555554 466777778888888888888888888888777776666333 33467777766666
Q ss_pred HHHHHHHHHHHHHhhhhhhc--hhhhhhhhhh-----HHhHHHHHHHHHhHHHHhhhhhhhHHhHHhhh
Q 012561 370 QIRSLSDQLAAAEEKLEVSD--LSALETKTEF-----EGQKKLINELRNHLEDAEYKLIEGEKLRKRLH 431 (461)
Q Consensus 370 qI~~Lq~QLa~A~eKLk~aD--lsa~etrte~-----E~Qk~~i~eLq~RLadaE~kiiEGEkLRKKLH 431 (461)
.|..+..+-..-...|+..+ ++.+.++.+. ..-++.|.+|+.|++|++-.+=....-|.|+-
T Consensus 1056 ~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~e 1124 (1930)
T KOG0161|consen 1056 SIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAE 1124 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665555555554444433 3444444333 23467888999999988887777666665553
No 17
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.27 E-value=0.0065 Score=65.62 Aligned_cols=180 Identities=21% Similarity=0.301 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhh
Q 012561 138 FEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASL 217 (461)
Q Consensus 138 ~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~L 217 (461)
.|.+.|.......++.+ ..|+..++.|...+...++.|..|+.+...... ....+..|++ .+....+.+
T Consensus 150 kE~eeL~~~~~~Le~e~----~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~----~~e~l~~E~~---~L~~q~~e~ 218 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEV----EQLREEVERLEAELEQEEEEMEQLKQQQKELTE----SSEELKEERE---SLKEQLAEA 218 (546)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH---HHHHHHHHH
Confidence 34444544444444444 456666677777777777777777766432221 2223333333 344445666
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHH
Q 012561 218 SEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQ 297 (461)
Q Consensus 218 seeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~Q 297 (461)
...+..+..++..++++.+..+-+-.++++-+..+.+.++-|+.-|......++..+.+.......+..|+.+..+++++
T Consensus 219 ~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~ 298 (546)
T PF07888_consen 219 RQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQ 298 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 67777788888888888887777777888888888898888886666555555544444444445556677777777777
Q ss_pred HHHhHhhHHHHHHhhHHHHHHHHHHH----HHHhhhhhh
Q 012561 298 LSTYKASQDEAMRQKDALVHEVASMR----VELQQVRDD 332 (461)
Q Consensus 298 L~~skaSq~Ea~kQK~~L~~Ev~~LR----~ELqqvRdD 332 (461)
|.++ ++++..-++.| .++...| .||++.|-+
T Consensus 299 lqaS---qq~~~~L~~EL-~~~~~~RDrt~aeLh~aRLe 333 (546)
T PF07888_consen 299 LQAS---QQEAELLRKEL-SDAVNVRDRTMAELHQARLE 333 (546)
T ss_pred HHHH---HHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhh
Confidence 7654 44444444444 3333333 455555533
No 18
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.20 E-value=0.014 Score=67.65 Aligned_cols=103 Identities=18% Similarity=0.224 Sum_probs=78.9
Q ss_pred HhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHH---------hHhh
Q 012561 234 RIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLST---------YKAS 304 (461)
Q Consensus 234 qi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~---------skaS 304 (461)
....++|+..-||+|-..|=.-|-+|++.+.+.......+--+...+-+.++.|.-+..+++-++.- .+.+
T Consensus 582 ~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~ 661 (1317)
T KOG0612|consen 582 ENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERIS 661 (1317)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 4456889999999999999999999999999888888888778888888888887777666554432 2333
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhh
Q 012561 305 QDEAMRQKDALVHEVASMRVELQQVRDDRDHQ 336 (461)
Q Consensus 305 q~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~ 336 (461)
+.|....+..+..+++.+-.+++|++...-+.
T Consensus 662 ~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 662 DSEKEALEIKLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443567778888999999999998887665
No 19
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.14 E-value=0.016 Score=66.81 Aligned_cols=109 Identities=20% Similarity=0.320 Sum_probs=73.3
Q ss_pred hhhhhhHHHHHHHHHHHHHhHH-hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhh-----hch---hhhhhhhhhHH
Q 012561 331 DDRDHQLSQVQALTAEVIKHKE-LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEV-----SDL---SALETKTEFEG 401 (461)
Q Consensus 331 dDRDr~~~QvqsL~aE~~~ykE-l~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~-----aDl---sa~etrte~E~ 401 (461)
..+.....++..+..++..+.+ +..+.+.++.+...-.+.++.+.+++..+.+-+.- ..+ ..........
T Consensus 816 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~- 894 (1201)
T PF12128_consen 816 EEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQLEQLEEQLRRLRDLLEKLAELSEPPNAEDAE- 894 (1201)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhhh-
Confidence 3455555666666666666666 77777788888888888888888888877776661 111 1111111111
Q ss_pred hHHHHHHHHHhHHHHhhhhhhhHHhHHhhhhhhhhhcccceeee
Q 012561 402 QKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILELEVNLSSSA 445 (461)
Q Consensus 402 Qk~~i~eLq~RLadaE~kiiEGEkLRKKLHNTILELKGNIRv~c 445 (461)
.++-+++.+.+..+..-..+++.++..|-.++|.|.-+.
T Consensus 895 -----~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~f~~~l~~~~ 933 (1201)
T PF12128_consen 895 -----GSVDERLRDLEDLLQRRKRLREELKKAVERFKGVLTKHS 933 (1201)
T ss_pred -----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445567777777788888999999999999999984433
No 20
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.13 E-value=0.035 Score=64.03 Aligned_cols=137 Identities=20% Similarity=0.259 Sum_probs=98.8
Q ss_pred hhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH------------------
Q 012561 291 YISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE------------------ 352 (461)
Q Consensus 291 ~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE------------------ 352 (461)
+.-+..+++...+-.+.+=.+...+...+..++.++++.+..||....+++.+..++...++
T Consensus 464 ~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~ 543 (1201)
T PF12128_consen 464 TEEEKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLE 543 (1201)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHH
Confidence 34456666666666666777777888889999999999999999999999998888887766
Q ss_pred -------------------------------------------------------------hhhhhhHHHHHHhhHHHHH
Q 012561 353 -------------------------------------------------------------LAVSSEDLEARCASQSNQI 371 (461)
Q Consensus 353 -------------------------------------------------------------l~~k~~~LEetCssQ~eqI 371 (461)
|..+...++..-....+..
T Consensus 544 fL~~~~p~We~tIGKVid~eLL~r~dL~P~l~~~~~~dslyGl~LdL~~I~~pd~~~~ee~L~~~l~~~~~~l~~~~~~~ 623 (1201)
T PF12128_consen 544 FLRKNKPGWEQTIGKVIDEELLYRTDLEPQLVEDSGSDSLYGLSLDLSAIDVPDYAASEEELRERLEQAEDQLQSAEERQ 623 (1201)
T ss_pred HHHhCCCcHHHHhHhhCCHHHhcCCCCCCeecCCCcccccceeEeehhhcCCchhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555666666
Q ss_pred HHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhhhhHHhH
Q 012561 372 RSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLR 427 (461)
Q Consensus 372 ~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~kiiEGEkLR 427 (461)
..++++|...+.+++-...-....+++++..+..+..|+......+.++-+--.-|
T Consensus 624 ~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 679 (1201)
T PF12128_consen 624 EELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEER 679 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777666665555554443333
No 21
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.08 E-value=0.046 Score=63.45 Aligned_cols=32 Identities=19% Similarity=0.163 Sum_probs=17.9
Q ss_pred hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhh
Q 012561 353 LAVSSEDLEARCASQSNQIRSLSDQLAAAEEK 384 (461)
Q Consensus 353 l~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eK 384 (461)
+..+.+.+...|+.+....+.+.+.|...+.+
T Consensus 996 l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~ 1027 (1311)
T TIGR00606 996 INEDMRLMRQDIDTQKIQERWLQDNLTLRKRE 1027 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666666666665555555433
No 22
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.04 E-value=0.013 Score=62.29 Aligned_cols=291 Identities=18% Similarity=0.251 Sum_probs=178.8
Q ss_pred ChHHhhHhHHHHHHHHHHHH-HHHHHhhhhh--------HHHHHHHHHHHHHHHhhHHHHHHHHH-chHHHHHHHHHHHH
Q 012561 107 NYKERCENMMDYIKRLRLCI-KWFQELEGDY--------AFEHERLRNALELSEQKCAEMELALR-NKEEELNLIIVELR 176 (461)
Q Consensus 107 dyKgr~EqM~dyIKrLr~CI-rWfqelE~~y--------~~EqekL~~~Le~~ek~~~e~E~~lk-~k~eEL~~~i~ELr 176 (461)
++...++.+=++++.|..=+ ..|.+|..|| .++.-.+...|+..+.++.+....+. -.++.....+.++.
T Consensus 209 ~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~ 288 (569)
T PRK04778 209 ALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQ 288 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 45666677777778888744 8888887766 33333445555555544444332222 23334444444444
Q ss_pred HHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhh
Q 012561 177 KSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYN 256 (461)
Q Consensus 177 ~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYN 256 (461)
..++.|- +.+++|..|+..+++....+...|..++.....+...+..|+.-|-.-...-
T Consensus 289 ~~Id~Ly--------------d~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~------- 347 (569)
T PRK04778 289 ERIDQLY--------------DILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESEL------- 347 (569)
T ss_pred HHHHHHH--------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhH-------
Confidence 4444443 4567788889999999999999999999988888888888876654321111
Q ss_pred hhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhh
Q 012561 257 TKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQ 336 (461)
Q Consensus 257 SkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~ 336 (461)
.......+.++.+++.-..+.+.+..-..-|..+++++.......++.-++...+.+.+..||.+-..+|+.
T Consensus 348 ----~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~k---- 419 (569)
T PRK04778 348 ----ESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREK---- 419 (569)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 112233345566666666677777777777888888888877777777777777777777777777766654
Q ss_pred HHHHHHHHHHHHHhHHhhhh------hhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchh--hhhhhhhhHHhHHHHHH
Q 012561 337 LSQVQALTAEVIKHKELAVS------SEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLS--ALETKTEFEGQKKLINE 408 (461)
Q Consensus 337 ~~QvqsL~aE~~~ykEl~~k------~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDls--a~etrte~E~Qk~~i~e 408 (461)
+..+...+...+..+.+ ...+-.--..-...|..|..+|.. -.+-|..+. ..+....|+.-.....+
T Consensus 420 ---L~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~--g~VNm~ai~~e~~e~~~~~~~L~~q~~d 494 (569)
T PRK04778 420 ---LERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEE--KPINMEAVNRLLEEATEDVETLEEETEE 494 (569)
T ss_pred ---HHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334432222 223333334445677777777765 334443333 23345556666666677
Q ss_pred HHHhHHHHhhhhhhhHHhHHhhh
Q 012561 409 LRNHLEDAEYKLIEGEKLRKRLH 431 (461)
Q Consensus 409 Lq~RLadaE~kiiEGEkLRKKLH 431 (461)
|..--.-+|.-|-.|...|.-.+
T Consensus 495 L~~~a~~lE~~Iqy~nRfr~~~~ 517 (569)
T PRK04778 495 LVENATLTEQLIQYANRYRSDNE 517 (569)
T ss_pred HHHHHHHHHHHHHHHhccCCCCH
Confidence 77777777766666666665443
No 23
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.00 E-value=0.05 Score=61.01 Aligned_cols=71 Identities=21% Similarity=0.325 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHH--------------HHHHHhhhhhHHHHHHHhhh
Q 012561 220 DLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDA--------------AHESIKRGEKEKSAIVENLS 285 (461)
Q Consensus 220 eL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~--------------~~e~~~r~eKEK~tivEnls 285 (461)
||..++.++..++.+......=|..|++-.++.++-++.||+|.+. ....+.+++.||+..-.-|+
T Consensus 302 E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~ 381 (775)
T PF10174_consen 302 ELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIE 381 (775)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555666778999999999999999999854 34455566667766544444
Q ss_pred hhhhh
Q 012561 286 TLRGQ 290 (461)
Q Consensus 286 ~LrG~ 290 (461)
-|+++
T Consensus 382 ~l~d~ 386 (775)
T PF10174_consen 382 DLRDM 386 (775)
T ss_pred HHHHH
Confidence 44433
No 24
>PRK11637 AmiB activator; Provisional
Probab=97.90 E-value=0.02 Score=58.62 Aligned_cols=42 Identities=29% Similarity=0.446 Sum_probs=22.0
Q ss_pred HHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHH
Q 012561 297 QLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLS 338 (461)
Q Consensus 297 QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~ 338 (461)
+|...+...++.......+..+...-+.+|++.+..|...+.
T Consensus 181 ~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~ 222 (428)
T PRK11637 181 ELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLT 222 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555544444433
No 25
>PRK11637 AmiB activator; Provisional
Probab=97.89 E-value=0.016 Score=59.23 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=23.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH
Q 012561 307 EAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE 352 (461)
Q Consensus 307 Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE 352 (461)
+.-.++..|..+....+..+.+++.++..+-.++..|.++...+..
T Consensus 202 e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~ 247 (428)
T PRK11637 202 EQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRD 247 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444555555555555555555555554444
No 26
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.84 E-value=0.056 Score=58.68 Aligned_cols=193 Identities=24% Similarity=0.336 Sum_probs=104.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHH
Q 012561 143 LRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLG 222 (461)
Q Consensus 143 L~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~ 222 (461)
|++.|+...+...++. .....|+.-...|+..+..|+..|...+-+ +.-+....++ +......|.++.+
T Consensus 141 lQ~qlE~~qkE~eeL~----~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee-~e~L~~~~ke------l~~~~e~l~~E~~ 209 (546)
T PF07888_consen 141 LQNQLEECQKEKEELL----KENEQLEEEVEQLREEVERLEAELEQEEEE-MEQLKQQQKE------LTESSEELKEERE 209 (546)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH------HHHHHHHHHHHHH
Confidence 5666666655555433 334456666677777777777777654432 2222222222 2223344566666
Q ss_pred HHHHHHHHHHHHhHhHHHHHH----HHHHHHhHHHhhhhhhhccHHHHHHHHh-hhhhHHHHHHHhhhhhhhhhhhHHHH
Q 012561 223 KAQEELQSANQRIASINDMYK----LLQEYNSSLQHYNTKLQKDIDAAHESIK-RGEKEKSAIVENLSTLRGQYISLQEQ 297 (461)
Q Consensus 223 k~q~E~~~anqqi~slqDmyK----RLQEYNTSLQQYNSkLQaDl~~~~e~~~-r~eKEK~tivEnls~LrG~~~SLq~Q 297 (461)
-++.+...+.++|..|++-.+ +..|..+-++++- .++.+++.....++ +++.. +..+....+....++.+
T Consensus 210 ~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk-~~~~elEq~~~eLk~rLk~~----~~~~~~~~~~~~~~~~e 284 (546)
T PF07888_consen 210 SLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKLK-ELKAELEQLEAELKQRLKET----VVQLKQEETQAQQLQQE 284 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH----HHHHHHhhhhhhhHHHH
Confidence 666666666666666665443 3455555566653 56666666654444 33222 11122112222333333
Q ss_pred HHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhH
Q 012561 298 LSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHK 351 (461)
Q Consensus 298 L~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~yk 351 (461)
++..+.-..-+=.+..+-..++..|+.||--+..-|||-.+..+...-+++..+
T Consensus 285 ~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~ 338 (546)
T PF07888_consen 285 NEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLK 338 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 333332222222333445567888888888888888998888777665554443
No 27
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.84 E-value=0.034 Score=53.75 Aligned_cols=92 Identities=25% Similarity=0.365 Sum_probs=58.2
Q ss_pred cHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhH----HHHHHHHHHHHHHhhhhhhhhhhH
Q 012561 262 DIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKD----ALVHEVASMRVELQQVRDDRDHQL 337 (461)
Q Consensus 262 Dl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~----~L~~Ev~~LR~ELqqvRdDRDr~~ 337 (461)
.+..+.+.++++.+.-..+--.+.+|++.+.+|..++.......+....... .+-.|+..||.++++.-.+....+
T Consensus 210 ~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll 289 (312)
T PF00038_consen 210 ELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELL 289 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777777888888888888888877666555444332 233444455555544444444444
Q ss_pred HHHHHHHHHHHHhHHh
Q 012561 338 SQVQALTAEVIKHKEL 353 (461)
Q Consensus 338 ~QvqsL~aE~~~ykEl 353 (461)
.-=-+|..||++|+-|
T Consensus 290 ~~K~~Ld~EIatYR~L 305 (312)
T PF00038_consen 290 DVKLALDAEIATYRKL 305 (312)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHH
Confidence 4344677899999863
No 28
>PRK09039 hypothetical protein; Validated
Probab=97.77 E-value=0.0036 Score=63.28 Aligned_cols=174 Identities=21% Similarity=0.287 Sum_probs=103.8
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhh
Q 012561 212 RSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQY 291 (461)
Q Consensus 212 ~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~ 291 (461)
-.|--|+++|.....++..++.||..+-|+---=+.=+..||+==..|+++++. ++.+++.+-..+..+.+..
T Consensus 39 ~~q~fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~-------a~~~r~~Le~~~~~~~~~~ 111 (343)
T PRK09039 39 VAQFFLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSA-------AEAERSRLQALLAELAGAG 111 (343)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhhhhc
Confidence 357789999999999999999999887766544444444444444444444443 3344433332222222212
Q ss_pred hhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHH
Q 012561 292 ISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQI 371 (461)
Q Consensus 292 ~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI 371 (461)
..++.+++. |..+|...+..=.....+|..|..+|+..+. ||
T Consensus 112 ~~~~~~~~~---------------------l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~-----------------Ql 153 (343)
T PRK09039 112 AAAEGRAGE---------------------LAQELDSEKQVSARALAQVELLNQQIAALRR-----------------QL 153 (343)
T ss_pred chHHHHHHH---------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-----------------HH
Confidence 222222222 2222322222223344567777777777766 67
Q ss_pred HHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHh-hhhhhhHHhHHhhhhhhhhhccc---ceee
Q 012561 372 RSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAE-YKLIEGEKLRKRLHNTILELEVN---LSSS 444 (461)
Q Consensus 372 ~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE-~kiiEGEkLRKKLHNTILELKGN---IRv~ 444 (461)
..|+..|++++.+. .+++..|.+|+.+|..|= .++-+-+.+|..++....++-|+ ||+.
T Consensus 154 a~le~~L~~ae~~~--------------~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~~~~l~~~~~~~~~iri~ 216 (343)
T PRK09039 154 AALEAALDASEKRD--------------RESQAKIADLGRRLNVALAQRVQELNRYRSEFFGRLREILGDREGIRIV 216 (343)
T ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCcEEE
Confidence 77777777776654 667778888888887774 34778888888888776655554 5653
No 29
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.77 E-value=0.044 Score=52.96 Aligned_cols=129 Identities=20% Similarity=0.237 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh----HHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHH
Q 012561 114 NMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQK----CAEMELALRNKEEELNLIIVELRKSFASLQEKLAKE 189 (461)
Q Consensus 114 qM~dyIKrLr~CIrWfqelE~~y~~EqekL~~~Le~~ek~----~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~ke 189 (461)
.|.+..-||-.+|-=-..||..+ .+|...|.....+ +..+-......+.+|...|.++...-+.|+-.+.+-
T Consensus 5 eL~~LNdRla~YIekVr~LE~~N----~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l 80 (312)
T PF00038_consen 5 ELQSLNDRLASYIEKVRFLEQEN----KRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNL 80 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhH
Confidence 44455555555554444444433 3455555555444 444555566666667777777777777777777777
Q ss_pred HhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 012561 190 ESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQ 246 (461)
Q Consensus 190 eseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQ 246 (461)
..+--+.-.-|..+...+..++....+|..+|+........+..+|.+|++=...+.
T Consensus 81 ~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~ 137 (312)
T PF00038_consen 81 KEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLK 137 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 777777777777788888888888888888888888888888888888876444443
No 30
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.73 E-value=0.064 Score=59.42 Aligned_cols=185 Identities=21% Similarity=0.329 Sum_probs=106.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHH-------HHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHH
Q 012561 114 NMMDYIKRLRLCIKWFQELEGDYAFE-------HERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKL 186 (461)
Q Consensus 114 qM~dyIKrLr~CIrWfqelE~~y~~E-------qekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L 186 (461)
.+-.=|||||.=|.-.-.+|..+-.. -..+++.|...++++.+++ +|+-+|......=+.++.+|+.+|
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq----~Kl~~L~~aRq~DKq~l~~LEkrL 497 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQ----NKLQNLVQARQQDKQSLQQLEKRL 497 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456899999999888888877665 3445556666666666433 344444444444445555555555
Q ss_pred hHHHhhHHHHHHhhHHHHHHHHHHH----------------------HHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q 012561 187 AKEESDKLAALDSLAREKETRLNME----------------------RSHASLSEDLGKAQEELQSANQRIASINDMYKL 244 (461)
Q Consensus 187 ~keeseKl~a~~s~~kEkEaR~~~E----------------------~~~~~LseeL~k~q~E~~~anqqi~slqDmyKR 244 (461)
.-|.-.|..+=.-+..|+-+|...| .-+..|-.|+.+++.|++...+++..++.=.
T Consensus 498 ~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~-- 575 (697)
T PF09726_consen 498 AEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESEL-- 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 5554444444444444444443321 2234455666667777666666665554433
Q ss_pred HHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHH
Q 012561 245 LQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRV 324 (461)
Q Consensus 245 LQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ 324 (461)
..|..|+ +.-+++-..+|-+|+.|++++.-|..-| -..++-|-+|-.-+---|.
T Consensus 576 -----~~lr~~~--------------~e~~~~~e~L~~aL~amqdk~~~LE~sL-------saEtriKldLfsaLg~akr 629 (697)
T PF09726_consen 576 -----QELRKYE--------------KESEKDTEVLMSALSAMQDKNQHLENSL-------SAETRIKLDLFSALGDAKR 629 (697)
T ss_pred -----HHHHHHH--------------hhhhhhHHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHH
Confidence 4555555 3345556667777777777665555433 3466777777766666666
Q ss_pred HHhhhh
Q 012561 325 ELQQVR 330 (461)
Q Consensus 325 ELqqvR 330 (461)
+|.-.-
T Consensus 630 q~ei~~ 635 (697)
T PF09726_consen 630 QLEIAQ 635 (697)
T ss_pred HHHHHH
Confidence 554433
No 31
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.73 E-value=0.038 Score=56.97 Aligned_cols=53 Identities=6% Similarity=0.067 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q 012561 140 HERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESD 192 (461)
Q Consensus 140 qekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keese 192 (461)
...+...++..+....+.+......+++++..+.++...+.+++.++...+.+
T Consensus 190 i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~ 242 (562)
T PHA02562 190 IDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDE 242 (562)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555555555566666666666666666666666555443
No 32
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.72 E-value=0.025 Score=60.27 Aligned_cols=189 Identities=16% Similarity=0.264 Sum_probs=116.8
Q ss_pred hHHhhHhHH-HHHHHHHHHHHHHHH----hh-hhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHH
Q 012561 108 YKERCENMM-DYIKRLRLCIKWFQE----LE-GDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFAS 181 (461)
Q Consensus 108 yKgr~EqM~-dyIKrLr~CIrWfqe----lE-~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~S 181 (461)
+-..|..-. +=+.-|+.=++-..+ ++ .+--.+...++.+|.........+ .++...+.+..+...+-.-++.
T Consensus 220 l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~ 297 (569)
T PRK04778 220 LLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEEL--DLDEAEEKNEEIQERIDQLYDI 297 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHH
Confidence 333444422 445555555554442 22 344567777777777766666554 3445555555555555555666
Q ss_pred HHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHH----------HHHHHHHhHhHHHHHHH-HHHHHh
Q 012561 182 LQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEE----------LQSANQRIASINDMYKL-LQEYNS 250 (461)
Q Consensus 182 Lqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E----------~~~anqqi~slqDmyKR-LQEYNT 250 (461)
|+ +|...|-.+-....+=......+...-..|..++++++.. ...+..++..++..++. ....|.
T Consensus 298 le----kE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~ 373 (569)
T PRK04778 298 LE----REVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAE 373 (569)
T ss_pred HH----HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 64 2333444444444444444555666666788888888887 77788888888877773 344555
Q ss_pred HHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHh
Q 012561 251 SLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKA 303 (461)
Q Consensus 251 SLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~ska 303 (461)
.-..| |.++..+....+.++.++++...|.+.+..||.--....++|.-.+.
T Consensus 374 ~~~~y-sel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~ 425 (569)
T PRK04778 374 QEIAY-SELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRN 425 (569)
T ss_pred CCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55553 66777777777788888888888888888887766555555554443
No 33
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.68 E-value=0.049 Score=52.06 Aligned_cols=141 Identities=22% Similarity=0.328 Sum_probs=104.4
Q ss_pred hhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHH
Q 012561 289 GQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQS 368 (461)
Q Consensus 289 G~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~ 368 (461)
+....|..||.-++...+++-..-+....=+..+.++|..+-+-=+..-+.+..|..++..... ....||..+.-..
T Consensus 92 eri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~---~lk~lE~~~~~~~ 168 (237)
T PF00261_consen 92 ERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGN---NLKSLEASEEKAS 168 (237)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHH---HHHHhhhhhhhhh
Confidence 3445566688888888888888888888888889999988877777777888888887776655 7778888888777
Q ss_pred HHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhh----hhHHhHHhhhhhhhhhcc
Q 012561 369 NQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLI----EGEKLRKRLHNTILELEV 439 (461)
Q Consensus 369 eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~kii----EGEkLRKKLHNTILELKG 439 (461)
++...++.++..-..+|+-+ ++|.+|.+. .+..|+.++.+.|-.|. .-..+.+.|+.|+.||-|
T Consensus 169 ~re~~~e~~i~~L~~~lkea-----E~Rae~aE~--~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el~~ 236 (237)
T PF00261_consen 169 EREDEYEEKIRDLEEKLKEA-----ENRAEFAER--RVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNELNE 236 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 78888888888888887766 555555553 35555555555554443 235678889999998854
No 34
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.63 E-value=0.093 Score=56.21 Aligned_cols=246 Identities=21% Similarity=0.253 Sum_probs=181.8
Q ss_pred ChHHhhHhHHHHHHHHH-HHHHHHHHhhhhhH--------HHHHHHHHHHHHHHhhHHHHHHHHHc-hHHHHHHHHHHHH
Q 012561 107 NYKERCENMMDYIKRLR-LCIKWFQELEGDYA--------FEHERLRNALELSEQKCAEMELALRN-KEEELNLIIVELR 176 (461)
Q Consensus 107 dyKgr~EqM~dyIKrLr-~CIrWfqelE~~y~--------~EqekL~~~Le~~ek~~~e~E~~lk~-k~eEL~~~i~ELr 176 (461)
+++..++.+=.|++.|. .+-..+.+|..+|- ++.-.+-..|+..+.++.+....+++ .+++....+.++.
T Consensus 205 ~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~ 284 (560)
T PF06160_consen 205 ELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIE 284 (560)
T ss_pred HHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56667777777777776 55677777776653 45556777777777777777777766 6777777888888
Q ss_pred HHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHH----------HHHHHHHHhHhHHHHHHHHH
Q 012561 177 KSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQE----------ELQSANQRIASINDMYKLLQ 246 (461)
Q Consensus 177 ~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~----------E~~~anqqi~slqDmyKRLQ 246 (461)
..+..|=+.|.+|-..|-..-.....=.+....+...-..|..++++++. ....+..++..+...|..+.
T Consensus 285 ~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~ 364 (560)
T PF06160_consen 285 ERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLE 364 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877777776666655555554455555555556666777777663 34556677777777777777
Q ss_pred HHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHH----------------HH
Q 012561 247 EYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEA----------------MR 310 (461)
Q Consensus 247 EYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea----------------~k 310 (461)
+--..=+.=-|.++..+....+.+..++++-..|.+.+.+||.--..-+++|...+....+. +.
T Consensus 365 ~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~ 444 (560)
T PF06160_consen 365 ERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLD 444 (560)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 66666666678899999999999999999999999999999987777777776665554433 33
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH
Q 012561 311 QKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE 352 (461)
Q Consensus 311 QK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE 352 (461)
.-....+++..|-.+|.+++=|=|.--.++......|.+..+
T Consensus 445 ~~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~ 486 (560)
T PF06160_consen 445 YFFDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEE 486 (560)
T ss_pred HHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 456677888999999999998888888888888888888887
No 35
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.60 E-value=0.22 Score=58.30 Aligned_cols=232 Identities=16% Similarity=0.240 Sum_probs=137.4
Q ss_pred CCCChHHhhHhHHHHHHHHHHHHHHHHHhhhhhHHH-----------HHHHHHHHHH------------------HHhhH
Q 012561 104 NKFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFE-----------HERLRNALEL------------------SEQKC 154 (461)
Q Consensus 104 ~KfdyKgr~EqM~dyIKrLr~CIrWfqelE~~y~~E-----------qekL~~~Le~------------------~ek~~ 154 (461)
.|-++-+..+--++|.++=--|.+|--.+.-.++.+ .+++...|.. -++.+
T Consensus 296 ek~~lE~~k~~al~fL~kenel~~~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~ 375 (1293)
T KOG0996|consen 296 EKKALEGPKNEALEFLKKENELFRKKNKLCQYILYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEI 375 (1293)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 334455556667889999889998866555444444 2222222222 12223
Q ss_pred HHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 012561 155 AEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQR 234 (461)
Q Consensus 155 ~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqq 234 (461)
.+....++|+.+.+.....++-......+|.|..--+.=-.+.....+.+..+-.++++-...+.++.+.+.|+..++..
T Consensus 376 ~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~ 455 (1293)
T KOG0996|consen 376 KERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEEL 455 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555444333333444455555555556666555666666666555555443
Q ss_pred hHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHH
Q 012561 235 IASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDA 314 (461)
Q Consensus 235 i~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~ 314 (461)
.. +..+-|-+-=-| |+.....-.+.+.+.+|+=.-..+.++..|| +++.+.+-.+.-..-++.
T Consensus 456 ~~---~~~~~l~e~~~~-------l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~-------e~~vaesel~~L~~~~~~ 518 (1293)
T KOG0996|consen 456 LE---KEERELDEILDS-------LKQETEGIREEIEKLEKELMPLLKQVNEARS-------ELDVAESELDILLSRHET 518 (1293)
T ss_pred HH---HHHHHHHHHHHH-------HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 22 222233333233 3344455566777778877777777788888 566666666666666777
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH
Q 012561 315 LVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE 352 (461)
Q Consensus 315 L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE 352 (461)
+.+-|..|.+-|++.+.+-+.....+.++..++...|.
T Consensus 519 ~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~ 556 (1293)
T KOG0996|consen 519 GLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQ 556 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 77778888888888888878888888888888877776
No 36
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.58 E-value=0.046 Score=56.42 Aligned_cols=65 Identities=17% Similarity=0.148 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhh
Q 012561 223 KAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQ 290 (461)
Q Consensus 223 k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~ 290 (461)
.++.++..+.+++.++++...++.+++. .+.-.++..++........++.+...+-+.|.+|+..
T Consensus 185 ~l~~~i~~l~~~i~~~~~~i~~~~~~~~---~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~ 249 (562)
T PHA02562 185 TLDMKIDHIQQQIKTYNKNIEEQRKKNG---ENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMD 249 (562)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3333333444444444444333333221 2233333333333333344444444444444444333
No 37
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=97.44 E-value=0.28 Score=57.23 Aligned_cols=302 Identities=13% Similarity=0.167 Sum_probs=182.0
Q ss_pred ccHHHHHHHHhhhhhccCCCChHHhhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHH
Q 012561 87 FTREDVEALLSEKMRYKNKFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEE 166 (461)
Q Consensus 87 FtredVeALLnEKmk~k~KfdyKgr~EqM~dyIKrLr~CIrWfqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~e 166 (461)
.|+++|.+-|+.= + ++|. .+.-.-+.-|..-+.|+.+.+.. -.....++..++.+-++..+...++.+.-.
T Consensus 23 p~~~~iq~~l~~~-~-~~~~------~~~k~~~~~l~~tl~~l~~~~~~-~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~ 93 (1109)
T PRK10929 23 PDEKQITQELEQA-K-AAKT------PAQAEIVEALQSALNWLEERKGS-LERAKQYQQVIDNFPKLSAELRQQLNNERD 93 (1109)
T ss_pred CCHHHHHHHHHHh-h-cCCC------hhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHhhhc
Confidence 6778898888873 3 3443 22667788888889999888753 355666777777666665544444332100
Q ss_pred HHHHHHHHHH--HHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh----HhH--
Q 012561 167 ELNLIIVELR--KSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRI----ASI-- 238 (461)
Q Consensus 167 EL~~~i~ELr--~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi----~sl-- 238 (461)
+. ...- -..+.|+.++ ...+.+|..++.++...|.++ .++
T Consensus 94 ~~----~~~~~~~s~~~Leq~l----------------------------~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~ 141 (1109)
T PRK10929 94 EP----RSVPPNMSTDALEQEI----------------------------LQVSSQLLEKSRQAQQEQDRAREISDSLSQ 141 (1109)
T ss_pred cc----ccccccCCHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Confidence 00 0000 0011222222 222333555555555555555 333
Q ss_pred -----HHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhH
Q 012561 239 -----NDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKD 313 (461)
Q Consensus 239 -----qDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~ 313 (461)
....+|||+-|+.|+..= .-...++. .....++-|-+.+--.+..++=.-.|.....+.++.-+|...++-+
T Consensus 142 ~pq~~~~~~~~l~~i~~~L~~~~-~~~~~l~~--a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~ 218 (1109)
T PRK10929 142 LPQQQTEARRQLNEIERRLQTLG-TPNTPLAQ--AQLTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQ 218 (1109)
T ss_pred chhhHHHHHHHHHHHHHHHhCCC-CCCCcccH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 566788888887665421 01122333 3456667777766666666666656666666777777777777777
Q ss_pred HHHHHHHHHHHHHhhhhhhh-hhhHHHHHH--------------HHHHHHHhHH----hhhhhhHHHHHHhhHHHHHHHH
Q 012561 314 ALVHEVASMRVELQQVRDDR-DHQLSQVQA--------------LTAEVIKHKE----LAVSSEDLEARCASQSNQIRSL 374 (461)
Q Consensus 314 ~L~~Ev~~LR~ELqqvRdDR-Dr~~~Qvqs--------------L~aE~~~ykE----l~~k~~~LEetCssQ~eqI~~L 374 (461)
.+-.++..|+..+-+-|-.- +..+.+.+. +...+..|.+ .+.+.|.|-..-..-.+++..+
T Consensus 219 ~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~ 298 (1109)
T PRK10929 219 QLDAYLQALRNQLNSQRQREAERALESTELLAEQSGDLPKSIVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQV 298 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777776665543221 112222222 2222333333 4555555533333334456677
Q ss_pred HHHHHHHHhhhhhhchhhhhhhhhhHHhHH-----HHHHHHHhHHHHhhhhhhhHHhHHhhhh
Q 012561 375 SDQLAAAEEKLEVSDLSALETKTEFEGQKK-----LINELRNHLEDAEYKLIEGEKLRKRLHN 432 (461)
Q Consensus 375 q~QLa~A~eKLk~aDlsa~etrte~E~Qk~-----~i~eLq~RLadaE~kiiEGEkLRKKLHN 432 (461)
.+.+...+|.+.+-..|..-.+.=|..+++ .+..|..+.||+-.+.++=+..|.+|++
T Consensus 299 ~q~~~~i~eQi~~l~~S~~Lg~~L~~Q~~~LP~~~~~~~l~~~IAdlRl~~f~~~q~~~~l~~ 361 (1109)
T PRK10929 299 RQALNTLREQSQWLGVSNALGEALRAQVARLPEMPKPQQLDTEMAQLRVQRLRYEDLLNKQPQ 361 (1109)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhCCCCcccchhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 777888899999999999999988887765 4788899999999999998888888875
No 38
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.37 E-value=0.39 Score=53.84 Aligned_cols=204 Identities=16% Similarity=0.225 Sum_probs=95.2
Q ss_pred HHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHH---HHHHHH--hhhHHHHHHHHHHH
Q 012561 154 CAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRL---NMERSH--ASLSEDLGKAQEEL 228 (461)
Q Consensus 154 ~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~---~~E~~~--~~LseeL~k~q~E~ 228 (461)
...+...++-...+++.-++.|+..++.. .+..+. .+..+..|..++. .+...+ ..|..+++......
T Consensus 169 ~e~~~~~l~e~~~~~~~~~e~l~~~~~~~-----~e~~~~--~~~~~~~e~~~~~~l~e~~~~~~~~~l~~e~e~l~~~~ 241 (908)
T COG0419 169 YEKLSELLKEVIKEAKAKIEELEGQLSEL-----LEDIED--LLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERL 241 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhhHH--HHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44445555555555555555555555511 111111 1333333333331 111111 22455555555555
Q ss_pred HHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHH
Q 012561 229 QSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEA 308 (461)
Q Consensus 229 ~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea 308 (461)
..+......+++...+++.|++...+....++..+......+..++.....+.+....+.. ++.++.. ....
T Consensus 242 ~el~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~----~~~~~~~----~~~~ 313 (908)
T COG0419 242 AELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEE----LEEELEG----LRAL 313 (908)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH----HHHH
Confidence 5555555555556666666666666665444444444444444444444444443333333 3333333 4445
Q ss_pred HHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH-hhhhhhHHHHHHhhHHHHHHHHHHHHH
Q 012561 309 MRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE-LAVSSEDLEARCASQSNQIRSLSDQLA 379 (461)
Q Consensus 309 ~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE-l~~k~~~LEetCssQ~eqI~~Lq~QLa 379 (461)
+.+.+.+.+.+..+...+....++. ..+..++..+.+ .......+++.|..-..++..++.++.
T Consensus 314 ~~~~~~~~~~l~~~~~~~~~~~~~~-------~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 378 (908)
T COG0419 314 LEELEELLEKLKSLEERLEKLEEKL-------EKLESELEELAEEKNELAKLLEERLKELEERLEELEKELE 378 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555554444444 444444444422 233444455555554444444444444
No 39
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.35 E-value=0.22 Score=58.17 Aligned_cols=289 Identities=21% Similarity=0.267 Sum_probs=158.7
Q ss_pred cccHHHHHHHHhhhhhc-cCCCChHHhhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHc-
Q 012561 86 EFTREDVEALLSEKMRY-KNKFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRN- 163 (461)
Q Consensus 86 eFtredVeALLnEKmk~-k~KfdyKgr~EqM~dyIKrLr~CIrWfqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~- 163 (461)
..++++|+-|=+.=-+- ...-...+....|-+-...||--|.-+--.=.-...+.-.+-..++..+++.++.|..+.-
T Consensus 774 ~~s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~ 853 (1293)
T KOG0996|consen 774 GVSKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKK 853 (1293)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 56688887764432221 2223345566666677777776665443311122333344444566666666666666322
Q ss_pred -----hHHHHHHHHHHHHHHHHHHHHHHhH-HHhhHH-HHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhH
Q 012561 164 -----KEEELNLIIVELRKSFASLQEKLAK-EESDKL-AALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIA 236 (461)
Q Consensus 164 -----k~eEL~~~i~ELr~~~~SLqe~L~k-eeseKl-~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~ 236 (461)
...++..+|++|++.+.-+||+=.| .+-+.+ +-|+..+.| .+-..+.++..+++||.
T Consensus 854 ~~d~~~l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e----------------~~q~qk~kv~~~~~~~~ 917 (1293)
T KOG0996|consen 854 VVDKKRLKELEEQIEELKKEVEELQEKAAKKARIKELQNKIDEIGGE----------------KVQAQKDKVEKINEQLD 917 (1293)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhch----------------hhHHhHHHHHHHHHHHH
Confidence 2356777778888887777754444 221111 112222222 22333444555555555
Q ss_pred hHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHH
Q 012561 237 SINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALV 316 (461)
Q Consensus 237 slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~ 316 (461)
.+.+=-.++.=-...=+.-=.+.|.-++.....+..+++|..++.+.+..++-...-++.-+.-+-.+..|+-++..++.
T Consensus 918 ~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k 997 (1293)
T KOG0996|consen 918 KLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLK 997 (1293)
T ss_pred HHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55433333221111111111256677778888899999999999999999888777777777777777777777777777
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhh
Q 012561 317 HEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETK 396 (461)
Q Consensus 317 ~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etr 396 (461)
.++..+--...-+.-+|=---..+ +.|..+-..|++=-.+......+|..+++| |+|
T Consensus 998 ~~~e~i~k~~~~lk~~rId~~~K~---------------------e~~~~~l~e~~~~~~~~~k~~~~l~~~~~t--E~~ 1054 (1293)
T KOG0996|consen 998 SELENIKKSENELKAERIDIENKL---------------------EAINGELNEIESKIKQPEKELKKLSLCNMT--ETR 1054 (1293)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHH---------------------HHHHHHHHHHHhhhhhHHHhhCccccccch--hhc
Confidence 777666543333322221111222 223333333444444444777888899987 555
Q ss_pred hhhHHhHHHHHHHHHhH
Q 012561 397 TEFEGQKKLINELRNHL 413 (461)
Q Consensus 397 te~E~Qk~~i~eLq~RL 413 (461)
-..+.--...++|+.++
T Consensus 1055 ~~~~~~~~~~Eeleae~ 1071 (1293)
T KOG0996|consen 1055 PQIELDVESPEELEAEM 1071 (1293)
T ss_pred cccccccCChHHHHhhh
Confidence 44444444445555444
No 40
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.31 E-value=0.78 Score=55.91 Aligned_cols=228 Identities=18% Similarity=0.230 Sum_probs=139.1
Q ss_pred HHhhHhHHHHHH----HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHH
Q 012561 109 KERCENMMDYIK----RLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQE 184 (461)
Q Consensus 109 Kgr~EqM~dyIK----rLr~CIrWfqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe 184 (461)
..|++...+=+- +|--|+--|-++....-+..+.+++.++...+.+..+=..+.++... |..|....+.|..
T Consensus 804 e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~----~~~le~k~~eL~k 879 (1822)
T KOG4674|consen 804 ESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTN----IAKLEIKLSELEK 879 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 355555444443 33457777777777777777777777777777776666555554332 2223333333333
Q ss_pred HHhHHHhhHHHHHH-hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccH
Q 012561 185 KLAKEESDKLAALD-SLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDI 263 (461)
Q Consensus 185 ~L~keeseKl~a~~-s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl 263 (461)
+|...++.....-- ++-.+.--+... --...+++.+.+..+..+.-+|.-.+++|.-.- .||.+-|+.|.-=.
T Consensus 880 ~l~~~~~~~~~l~~~~~~~d~~~~~~~---Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~e---qsl~~~ks~lde~~ 953 (1822)
T KOG4674|consen 880 RLKSAKTQLLNLDSKSSNEDATILEDT---LRKELEEITDLKEELTDALSQIREYQEEYSSLE---QSLESVKSELDETR 953 (1822)
T ss_pred HHHHhHHHHhhccccchhhhhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 33333333221110 111111111111 111223444558889999999999999997654 58888898888777
Q ss_pred HHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Q 012561 264 DAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQAL 343 (461)
Q Consensus 264 ~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL 343 (461)
......|....+++...=+.++.|++..-.|.++++.+...-. .+..++..++.+|+.|++.+..-+-.+..+..++
T Consensus 954 ~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e---~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~ 1030 (1822)
T KOG4674|consen 954 LELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKE---DKLLDLSREISSLQNELKSLLKAASQANEQIEDL 1030 (1822)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh---hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888999999999999999999999999877655422 2345566666666666666555555555555555
Q ss_pred HHHHHH
Q 012561 344 TAEVIK 349 (461)
Q Consensus 344 ~aE~~~ 349 (461)
.-++..
T Consensus 1031 k~dl~~ 1036 (1822)
T KOG4674|consen 1031 QNDLKT 1036 (1822)
T ss_pred HHHHHH
Confidence 544443
No 41
>PRK01156 chromosome segregation protein; Provisional
Probab=97.06 E-value=0.74 Score=51.06 Aligned_cols=32 Identities=6% Similarity=0.179 Sum_probs=18.5
Q ss_pred hhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhh
Q 012561 390 LSALETKTEFEGQKKLINELRNHLEDAEYKLI 421 (461)
Q Consensus 390 lsa~etrte~E~Qk~~i~eLq~RLadaE~kii 421 (461)
...+.....+++-+..|.+|+..+...+.++-
T Consensus 402 ~~~~~~~~~~~e~~~~~~~l~~~i~~l~~~i~ 433 (895)
T PRK01156 402 IDPDAIKKELNEINVKLQDISSKVSSLNQRIR 433 (895)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445556666777777777666554443
No 42
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.99 E-value=0.93 Score=50.94 Aligned_cols=181 Identities=23% Similarity=0.263 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHHHhHHHhhhhhh--hccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHH
Q 012561 237 SINDMYKLLQEYNSSLQHYNTKL--QKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDA 314 (461)
Q Consensus 237 slqDmyKRLQEYNTSLQQYNSkL--QaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~ 314 (461)
.++..-+++++.+.-++.||... +..+....+.++.+.+....|.+.++.+.....++ .-.++-.+.+.
T Consensus 560 e~~~le~~~~~l~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~---------~~~~~~~e~~~ 630 (908)
T COG0419 560 ELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSL---------ELSEAENELEE 630 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------hhHHHHHHHHH
Confidence 33355567777888888887776 56666666555555555555555555544433333 22223333333
Q ss_pred HHHHHHHHHHHHh------hhhhh-hhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhh
Q 012561 315 LVHEVASMRVELQ------QVRDD-RDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEV 387 (461)
Q Consensus 315 L~~Ev~~LR~ELq------qvRdD-RDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~ 387 (461)
...++...+..++ ....+ ....-.++..+.+++...-. ..-+. ...--....+..+..+|.....+|.-
T Consensus 631 ~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~el~~~~~~l~~ 706 (908)
T COG0419 631 AEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQ--RIENE--EQLEEKLEELEQLEEELEQLREELEE 706 (908)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH--HHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3334433333333 11111 11122222233333332000 00000 00011111144455555555555433
Q ss_pred hchhhhh---hhhhhHHhHHHHHHHHHhHHHHhhhhhhhHHhHHhh
Q 012561 388 SDLSALE---TKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRL 430 (461)
Q Consensus 388 aDlsa~e---trte~E~Qk~~i~eLq~RLadaE~kiiEGEkLRKKL 430 (461)
..-.... ..-..+.++..+..+..++..++..+-.-..||.++
T Consensus 707 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 752 (908)
T COG0419 707 LLKKLGEIEQLIEELESRKAELEELKKELEKLEKALELLEELREKL 752 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222222 555666677777777777777776666666665544
No 43
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.97 E-value=0.00018 Score=79.94 Aligned_cols=295 Identities=21% Similarity=0.297 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHH---HHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHH
Q 012561 136 YAFEHERLRNALELSEQKCAEMEL---ALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMER 212 (461)
Q Consensus 136 y~~EqekL~~~Le~~ek~~~e~E~---~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~ 212 (461)
+..|...|..+|+..+.+...+.. .|...++++...+.+-.+.-.+|+.++...+.+.-.+-+.+..|-+++...++
T Consensus 213 L~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~ 292 (859)
T PF01576_consen 213 LQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELER 292 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 334455555555555554444332 55667777777777777777888888888888888888888888888888777
Q ss_pred HHhhhHHHHHHHHHHHHH---------------HHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHH-------HHHH
Q 012561 213 SHASLSEDLGKAQEELQS---------------ANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAA-------HESI 270 (461)
Q Consensus 213 ~~~~LseeL~k~q~E~~~---------------anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~-------~e~~ 270 (461)
....+..+|.-++.-... +..+|..+++-+.-++..+.+|-.=..+|++++.-+ ...+
T Consensus 293 qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~ 372 (859)
T PF01576_consen 293 QLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAA 372 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666544433222 222222222222223333344444444555554443 3333
Q ss_pred hhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 012561 271 KRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKH 350 (461)
Q Consensus 271 ~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~y 350 (461)
..++|-....-..++.+++.+..++ +..+.+-+....+-.|+-.|+.+|....+..+..--....|..||.-+
T Consensus 373 ~~LeKKqr~fDk~l~e~k~~~~~~~-------~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl 445 (859)
T PF01576_consen 373 AELEKKQRKFDKQLAEWKAKVEELQ-------AERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDL 445 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3444433334444445555433333 333344455566666777777777777777776666667777776655
Q ss_pred HH-----------hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHH---------------hHH
Q 012561 351 KE-----------LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEG---------------QKK 404 (461)
Q Consensus 351 kE-----------l~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~---------------Qk~ 404 (461)
.. |-.....||..-.-+..++..+...|..+..+.....+.....+++|+- ..+
T Consensus 446 ~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr 525 (859)
T PF01576_consen 446 TSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQR 525 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHH
Confidence 44 5556667777788888888888888888888888877777777776653 266
Q ss_pred HHHHHHHhHHHHhhhh-hhhHHhHHhhhhhhhhhc
Q 012561 405 LINELRNHLEDAEYKL-IEGEKLRKRLHNTILELE 438 (461)
Q Consensus 405 ~i~eLq~RLadaE~ki-iEGEkLRKKLHNTILELK 438 (461)
.|.+|+..| |.|.+- -+.-..||||-.-|-||.
T Consensus 526 ~l~~le~~L-E~E~k~r~~~~r~kkKLE~~l~eLe 559 (859)
T PF01576_consen 526 QLESLEAEL-EEERKERAEALREKKKLESDLNELE 559 (859)
T ss_dssp -----------------------------------
T ss_pred HHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999 456554 334677888888887774
No 44
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.89 E-value=0.44 Score=45.68 Aligned_cols=194 Identities=22% Similarity=0.375 Sum_probs=123.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHchH---HHHHHHHHHHHHHHHHHHHHHhHHHh------hHHHHHHhhHHHHHH-HHHHH
Q 012561 142 RLRNALELSEQKCAEMELALRNKE---EELNLIIVELRKSFASLQEKLAKEES------DKLAALDSLAREKET-RLNME 211 (461)
Q Consensus 142 kL~~~Le~~ek~~~e~E~~lk~k~---eEL~~~i~ELr~~~~SLqe~L~kees------eKl~a~~s~~kEkEa-R~~~E 211 (461)
.++..||.++.++.+++..++... +..++-+..|.+.+..|++.|.+.+. .|++.++.-..|-+. +.++|
T Consensus 5 ~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE 84 (237)
T PF00261_consen 5 QLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLE 84 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777665544 44556677788888888888887664 577777776666644 44555
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhh
Q 012561 212 RSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQY 291 (461)
Q Consensus 212 ~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~ 291 (461)
.-.....+-|+.+...+..+... ++|.-.++.|-..-|.. +..||..+.+....++..=..+-+.|..+.+
T Consensus 85 ~r~~~~eeri~~lE~~l~ea~~~---~ee~e~k~~E~~rkl~~----~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~-- 155 (237)
T PF00261_consen 85 NREQSDEERIEELEQQLKEAKRR---AEEAERKYEEVERKLKV----LEQELERAEERAEAAESKIKELEEELKSVGN-- 155 (237)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHH---HHHHHHHHHHCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhchhHHHHHHHHHHHHH--
Confidence 55555566666666665555544 45555566666555543 6777777777777777665555566655555
Q ss_pred hhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 012561 292 ISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIK 349 (461)
Q Consensus 292 ~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ 349 (461)
.|-+.-++...+...-+.+-..+..|..-|..+-.--+..-..|+.|..+|..
T Consensus 156 -----~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~ 208 (237)
T PF00261_consen 156 -----NLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDR 208 (237)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444456666666667777778888877777755545444455554444433
No 45
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.86 E-value=1.6 Score=51.64 Aligned_cols=219 Identities=21% Similarity=0.208 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHH------HHHHh-
Q 012561 116 MDYIKRLRLCIKWFQE-LEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASL------QEKLA- 187 (461)
Q Consensus 116 ~dyIKrLr~CIrWfqe-lE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SL------qe~L~- 187 (461)
-+-|.+|+.=..=+++ -+--+..++......+...+.+..+++++++.+++||+-+-........++ +.+|.
T Consensus 471 ~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~ 550 (1317)
T KOG0612|consen 471 EETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEE 550 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4455666555444443 223344555555556666677777777777777777766533333322222 21211
Q ss_pred -----HHHhhHH--------------HHHHhhH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 012561 188 -----KEESDKL--------------AALDSLA-REKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQE 247 (461)
Q Consensus 188 -----keeseKl--------------~a~~s~~-kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQE 247 (461)
.-|+++. .-+.+-. ...+.+.-.+.+.-.|+++..+++.+......+-+.+..+.+-+++
T Consensus 551 ~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~ 630 (1317)
T KOG0612|consen 551 AELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKE 630 (1317)
T ss_pred hhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111111 0111111 1222334455566677778888888888888888888888888888
Q ss_pred HHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhh-----------------hhhhhhhhhH-------HHHHHHhHh
Q 012561 248 YNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENL-----------------STLRGQYISL-------QEQLSTYKA 303 (461)
Q Consensus 248 YNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnl-----------------s~LrG~~~SL-------q~QL~~ska 303 (461)
=++|||-=|-.+..++-++.+ .++..-|..+=+|.- --+..-...+ +.+...++.
T Consensus 631 ~i~sL~~~~~~~~~~l~k~~e-l~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~~L~~~e~~~~e~~~~l 709 (1317)
T KOG0612|consen 631 EISSLEETLKAGKKELLKVEE-LKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRLRLQDKEAQMKEIESKL 709 (1317)
T ss_pred HHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 888888888777777777766 665555554444441 1112222222 344444444
Q ss_pred hHHHHHHhhH-H----HHHHHHHHHHHHhhhhhhhhh
Q 012561 304 SQDEAMRQKD-A----LVHEVASMRVELQQVRDDRDH 335 (461)
Q Consensus 304 Sq~Ea~kQK~-~----L~~Ev~~LR~ELqqvRdDRDr 335 (461)
|.+...+.|- . +..|++.|+.++.+.++-.-+
T Consensus 710 seek~ar~k~e~~~~~i~~e~e~L~~d~~~~~~~~~~ 746 (1317)
T KOG0612|consen 710 SEEKSAREKAENLLLEIEAELEYLSNDYKQSQEKLNE 746 (1317)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhhhhhhccchhh
Confidence 4444444332 1 455667777777666644333
No 46
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.83 E-value=0.00028 Score=78.50 Aligned_cols=227 Identities=25% Similarity=0.344 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHchH----HHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHH
Q 012561 138 FEHERLRNALELSEQKCAEMELALRNKE----EELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERS 213 (461)
Q Consensus 138 ~EqekL~~~Le~~ek~~~e~E~~lk~k~----eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~ 213 (461)
.|..+|+..|+.....|...-..|+-|. ++|+.-|..|++.-+.|+-.-..-+.+--++...+....-++..+|+.
T Consensus 102 ~El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~ 181 (859)
T PF01576_consen 102 AELAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKK 181 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhH
Confidence 5667888888887777776666666554 566666666666666555444444444444555555555666667776
Q ss_pred HhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhh
Q 012561 214 HASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYIS 293 (461)
Q Consensus 214 ~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~S 293 (461)
.-.+-..|.-++.-+...+..+..+.+...+|+ .=|+-|...++.....+..+.+.|+ +
T Consensus 182 ~K~lE~qL~El~~klee~er~~~el~~~k~kL~-------~E~~eL~~qLee~e~~~~~l~r~k~--------------~ 240 (859)
T PF01576_consen 182 RKQLEAQLNELQAKLEESERQRNELTEQKAKLQ-------SENSELTRQLEEAESQLSQLQREKS--------------S 240 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH--------------H
Confidence 666666666666555555555554444444433 3344445555555555555555443 4
Q ss_pred HHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhh-------hHHHHHHHHHHHHHhHH-----hhhhhhHHH
Q 012561 294 LQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDH-------QLSQVQALTAEVIKHKE-----LAVSSEDLE 361 (461)
Q Consensus 294 Lq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr-------~~~QvqsL~aE~~~ykE-----l~~k~~~LE 361 (461)
|..||+-++...++.++.|..|.+.+..+..|+..+|+..|- .-.|+..+.+|+..++- ...++..||
T Consensus 241 L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelE 320 (859)
T PF01576_consen 241 LESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELE 320 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHH
Confidence 556788888888888888888888888888888888776553 33456666777766654 444455565
Q ss_pred HHHhhHHHHHHHHHHHHHHHHhhh
Q 012561 362 ARCASQSNQIRSLSDQLAAAEEKL 385 (461)
Q Consensus 362 etCssQ~eqI~~Lq~QLa~A~eKL 385 (461)
+.=-.-..+|..++.++..++.+.
T Consensus 321 eaKKkL~~~L~el~e~le~~~~~~ 344 (859)
T PF01576_consen 321 EAKKKLERKLQELQEQLEEANAKV 344 (859)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544444445555555555554443
No 47
>PRK01156 chromosome segregation protein; Provisional
Probab=96.83 E-value=1.2 Score=49.56 Aligned_cols=14 Identities=14% Similarity=0.238 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 012561 367 QSNQIRSLSDQLAA 380 (461)
Q Consensus 367 Q~eqI~~Lq~QLa~ 380 (461)
-..+|..+..++..
T Consensus 700 l~~~i~~l~~~~~~ 713 (895)
T PRK01156 700 LESTIEILRTRINE 713 (895)
T ss_pred HHHHHHHHHhhHHH
Confidence 33333333333333
No 48
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.81 E-value=0.034 Score=50.91 Aligned_cols=104 Identities=17% Similarity=0.257 Sum_probs=90.8
Q ss_pred HHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH
Q 012561 267 HESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAE 346 (461)
Q Consensus 267 ~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE 346 (461)
.+.+++.+-+++ +|.+|+-+|.-.|..+...+..++.+-+....||.+|..+|..++..|.+.-..+.++..|
T Consensus 9 ~~kLK~~~~e~d-------sle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sE 81 (140)
T PF10473_consen 9 EEKLKESESEKD-------SLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSE 81 (140)
T ss_pred HHHHHHHHHhHh-------hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677776665 5678999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHhHH----hhhhhhHHHHHHhhHHHHHHHHHHH
Q 012561 347 VIKHKE----LAVSSEDLEARCASQSNQIRSLSDQ 377 (461)
Q Consensus 347 ~~~ykE----l~~k~~~LEetCssQ~eqI~~Lq~Q 377 (461)
-...-- ...++.+||..+++=...|..+++.
T Consensus 82 k~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 82 KENLDKELQKKQEKVSELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 765532 6668999999999999999888877
No 49
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.78 E-value=0.82 Score=51.01 Aligned_cols=53 Identities=30% Similarity=0.349 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHH---HHchHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 012561 138 FEHERLRNALELSEQKCAEMELA---LRNKEEELNLIIVELRKSFASLQEKLAKEE 190 (461)
Q Consensus 138 ~EqekL~~~Le~~ek~~~e~E~~---lk~k~eEL~~~i~ELr~~~~SLqe~L~kee 190 (461)
.|.++|+..|...++-=.|+-.+ +-+-+..+...+..||+.+..||-++..-.
T Consensus 425 ~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~ 480 (697)
T PF09726_consen 425 ADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLV 480 (697)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999998888765555555 445577888889999999999998887643
No 50
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.75 E-value=1.7 Score=50.43 Aligned_cols=251 Identities=19% Similarity=0.287 Sum_probs=162.5
Q ss_pred HHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHH
Q 012561 160 ALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASIN 239 (461)
Q Consensus 160 ~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slq 239 (461)
.|+...|.|...-+.+-.+.++||-.|...--++-+|.+.-.+-++.- +.+-+-++=+..+..-|..+..+||
T Consensus 259 kmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~em-------ad~ad~iEmaTldKEmAEERaesLQ 331 (1243)
T KOG0971|consen 259 KMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEM-------ADTADAIEMATLDKEMAEERAESLQ 331 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 478888899999999999999999999998888888887765555432 2333444555555666666666666
Q ss_pred HHHHHHHHHHhHHHhhhhhhhccHHHHHHH---------------HhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhh
Q 012561 240 DMYKLLQEYNSSLQHYNTKLQKDIDAAHES---------------IKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKAS 304 (461)
Q Consensus 240 DmyKRLQEYNTSLQQYNSkLQaDl~~~~e~---------------~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaS 304 (461)
-=.--|+|-|-+ |-.|++...+. .++++---+.+-++|-.||+ .
T Consensus 332 ~eve~lkEr~de-------letdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRD--------------l 390 (1243)
T KOG0971|consen 332 QEVEALKERVDE-------LETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRD--------------L 390 (1243)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHh--------------c
Confidence 555555554443 34555444332 23333333333333333443 3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH---------------------hhhhhhHHHHH
Q 012561 305 QDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE---------------------LAVSSEDLEAR 363 (461)
Q Consensus 305 q~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE---------------------l~~k~~~LEet 363 (461)
--.+..-+-.+.+|++.++.|+--++.-+.+...++.-+.+-|+-+|| |-.|+..|||+
T Consensus 391 sA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeet 470 (1243)
T KOG0971|consen 391 SASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEET 470 (1243)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHH
Confidence 333444455688999999999999999999999999999999999998 33445555555
Q ss_pred HhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhhhhHH-------hHHhhhhhhhh
Q 012561 364 CASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEK-------LRKRLHNTILE 436 (461)
Q Consensus 364 CssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~kiiEGEk-------LRKKLHNTILE 436 (461)
-. +-|-.+.+.+||.-.+.-+.. .-|.|.+--+--+++|+.|..+|--.+++-+- |=.+|..-|.|
T Consensus 471 v~-dlEalee~~EQL~Esn~ele~------DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe 543 (1243)
T KOG0971|consen 471 VG-DLEALEEMNEQLQESNRELEL------DLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQE 543 (1243)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 32 344456667788877766542 34666666667778888887777766666543 33456666777
Q ss_pred hcccceeeeee
Q 012561 437 LEVNLSSSALF 447 (461)
Q Consensus 437 LKGNIRv~crv 447 (461)
|+. ++|..+
T Consensus 544 ~~d--q~~Sse 552 (1243)
T KOG0971|consen 544 LTD--QQESSE 552 (1243)
T ss_pred HHh--hhhhhH
Confidence 765 444433
No 51
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=96.74 E-value=0.15 Score=57.21 Aligned_cols=148 Identities=28% Similarity=0.325 Sum_probs=91.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHH
Q 012561 216 SLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQ 295 (461)
Q Consensus 216 ~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq 295 (461)
.|-+++++.-.|+.+|+|+..+..|-++||- - ++-|.+.---||..+-.|-. +.|-
T Consensus 167 kl~~~~qe~naeL~rarqreemneeh~~rls--d---------------tvdErlqlhlkermaAle~k-------n~L~ 222 (916)
T KOG0249|consen 167 KLEEQLEELNAELQRARQREKMNEEHNKRLS--D---------------TVDERLQLHLKERMAALEDK-------NRLE 222 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccccc--c---------------ccHHHHHHHHHHHHHHHHHH-------HHHH
Confidence 4455555566666666666666666666651 1 12244444445555555544 4455
Q ss_pred HHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH-----------------------
Q 012561 296 EQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE----------------------- 352 (461)
Q Consensus 296 ~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE----------------------- 352 (461)
.++++.|--..+.-+-|+.|.++.+.||+|+.|.| | +.+.+-+.+-..+.+|-+
T Consensus 223 ~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~--~-~~~~~~~~mrd~~~~~~e~~~~~~~~~~k~S~~~rrp~~gr 299 (916)
T KOG0249|consen 223 QELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR--R-SSLEKEQELRDHLRTYAERRRETETTNYKTSGVRRRPRKGR 299 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--H-HHHhhhhhhcchhhhhHHHHHhhcchhhhhhhhhhhhhhhh
Confidence 57777777777888999999999999999999999 3 444555555555555555
Q ss_pred ------hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhch
Q 012561 353 ------LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDL 390 (461)
Q Consensus 353 ------l~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDl 390 (461)
...|+-.|++.-.--.-|+.-|+.++-++..-+-+||.
T Consensus 300 L~~~rdep~kv~~l~~q~w~r~qq~~vl~~~~q~f~S~~~~ad~ 343 (916)
T KOG0249|consen 300 LKALRDEPEKVQTLNEQEWARDQQAQVLANVLQAFESDLTGSDS 343 (916)
T ss_pred HHHhhhchHHHHHHHHHHHHHHHHHHhccchhhhhhcCCccccc
Confidence 23355555555555555555666556666655555554
No 52
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.72 E-value=1.7 Score=50.02 Aligned_cols=173 Identities=18% Similarity=0.209 Sum_probs=106.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHH
Q 012561 134 GDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERS 213 (461)
Q Consensus 134 ~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~ 213 (461)
.-...|+++|+..+........+.|... +.++|..-.+.-...+|.-|-+++..-..++.++++-|..=.-.-.+++.+
T Consensus 382 qe~~~e~eqLr~elaql~a~r~q~eka~-~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s 460 (980)
T KOG0980|consen 382 QENREEQEQLRNELAQLLASRTQLEKAQ-VLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQS 460 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456777888877666655555555432 236777777777788888888888888888888888887766555555555
Q ss_pred HhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhh
Q 012561 214 HASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYIS 293 (461)
Q Consensus 214 ~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~S 293 (461)
+. .+..+...+|.++..++| -.++.|.|.+.++. .++.++.|+.....-+..|.+....
T Consensus 461 ~~-------~~~~~~~~L~d~le~~~~----------~~~~~~~K~e~~~~----~le~l~~El~~l~~e~~~lq~~~~~ 519 (980)
T KOG0980|consen 461 ID-------DVEEENTNLNDQLEELQR----------AAGRAETKTESQAK----ALESLRQELALLLIELEELQRTLSN 519 (980)
T ss_pred HH-------HHHHHHHHHHHHHHHHHH----------HHHHHHHhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 55 333334444444444443 23445556555543 3455666666666666666665322
Q ss_pred HHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhh
Q 012561 294 LQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQ 328 (461)
Q Consensus 294 Lq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqq 328 (461)
+-.--..-.+-..+..+|||.+..+|.-=+.|++-
T Consensus 520 ~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~~e~~~ 554 (980)
T KOG0980|consen 520 LAQSHNNQLAQLEDLLKQKDRLAAELVAREEEREA 554 (980)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 22222223345577889999998887655544433
No 53
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.63 E-value=2.6 Score=50.89 Aligned_cols=118 Identities=16% Similarity=0.186 Sum_probs=54.3
Q ss_pred HHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhh------------hhhhHHHHHHHHHHHHHhHH-------hh
Q 012561 294 LQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDD------------RDHQLSQVQALTAEVIKHKE-------LA 354 (461)
Q Consensus 294 Lq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdD------------RDr~~~QvqsL~aE~~~ykE-------l~ 354 (461)
|++-++.-.+...+...+-.++..++..+...+++.+.. |-.....+..+......++- +.
T Consensus 440 Le~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (1486)
T PRK04863 440 AEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQLQQLR 519 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhHHHHHHHHhhHHHH
Confidence 444444444444444444444444444444444444332 33333333333333333333 55
Q ss_pred hhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHH
Q 012561 355 VSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLED 415 (461)
Q Consensus 355 ~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLad 415 (461)
.+..+||-..-.|+...+.|. .++.++...=-++.+--..+++|...+++|..-+++
T Consensus 520 ~~~~~l~~~~~~q~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (1486)
T PRK04863 520 MRLSELEQRLRQQQRAERLLA----EFCKRLGKNLDDEDELEQLQEELEARLESLSESVSE 576 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666667766666665554443 333333322222333333455666666555554444
No 54
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.59 E-value=1.4 Score=47.22 Aligned_cols=187 Identities=18% Similarity=0.239 Sum_probs=98.9
Q ss_pred HhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhh
Q 012561 214 HASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYIS 293 (461)
Q Consensus 214 ~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~S 293 (461)
..+...||+.++..+..++.-+.+|.+. ...|..++..+...+.++...-...--.+++|.+..+.
T Consensus 283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~--------------vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~ 348 (522)
T PF05701_consen 283 LASAKKELEEAKKELEKAKEEASSLRAS--------------VESLRSELEKEKEELERLKEREKEASSEVSSLEAELNK 348 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHH
Confidence 4445555555555555555544444433 34456677777777776665444444445555555555
Q ss_pred HHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH----hhhhhhHHHHHHhhHHH
Q 012561 294 LQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE----LAVSSEDLEARCASQSN 369 (461)
Q Consensus 294 Lq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE----l~~k~~~LEetCssQ~e 369 (461)
++..|..+++... .....+..|-..|||+..+-+..-........|+.++++ ....+...|.+|..-.+
T Consensus 349 ~r~eLea~~~~e~-------~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~k 421 (522)
T PF05701_consen 349 TRSELEAAKAEEE-------KAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALK 421 (522)
T ss_pred HHHHHHHHHhhhc-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544444333 233445555555666666655555556666666666665 44455556666655555
Q ss_pred HHHHHHHHHHHHHhhhhh--------------hchhhhhhhhhhHHhHHHHHHHH----HhHHHHhhhhh
Q 012561 370 QIRSLSDQLAAAEEKLEV--------------SDLSALETKTEFEGQKKLINELR----NHLEDAEYKLI 421 (461)
Q Consensus 370 qI~~Lq~QLa~A~eKLk~--------------aDlsa~etrte~E~Qk~~i~eLq----~RLadaE~kii 421 (461)
.+..-..-=+.|-..++. +.-...-+.-||+.-.+..++.. .|.+.|-.+|=
T Consensus 422 e~eaaKasEa~Ala~ik~l~e~~~~~~~~~~~~~~~Vtls~eEy~~L~~ka~e~ee~a~kkva~A~aqve 491 (522)
T PF05701_consen 422 EAEAAKASEALALAEIKALSESESSSRASDSESSSKVTLSLEEYESLSKKAEEAEELAEKKVAAAMAQVE 491 (522)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccccccccCCCCCeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554444333333333331 11224456677777777766643 35666655554
No 55
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.53 E-value=1.9 Score=48.00 Aligned_cols=236 Identities=22% Similarity=0.294 Sum_probs=129.8
Q ss_pred HHHHHHHhHHHhhHHHHHH--hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhh-h
Q 012561 180 ASLQEKLAKEESDKLAALD--SLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHY-N 256 (461)
Q Consensus 180 ~SLqe~L~keeseKl~a~~--s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQY-N 256 (461)
.-|.+++.+.+..-...++ ....+.+.-...-.-++.|-++...++.-+..+..+|.+++--.+--|-==+-+=+| -
T Consensus 148 ~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~d 227 (629)
T KOG0963|consen 148 RNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYD 227 (629)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Confidence 3344555555554444444 333333333333344566666666666666667777766643332222111111111 1
Q ss_pred hh----------hhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHH-----------HHhhHHH
Q 012561 257 TK----------LQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEA-----------MRQKDAL 315 (461)
Q Consensus 257 Sk----------LQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea-----------~kQK~~L 315 (461)
-. +-.|++.+.-.+--+|+|...+-+ ||..+..+++-+ +-|||
T Consensus 228 ee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~--------------ql~~~N~~~~~~~~~~i~~~~~~L~~kd-- 291 (629)
T KOG0963|consen 228 EEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLRE--------------QLAKANSSKKLAKIDDIDALGSVLNQKD-- 291 (629)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHhhhhhhhhccCCchHHHHHHHhHHH--
Confidence 11 123444454455555555444333 444444444333 33444
Q ss_pred HHHHHHHHHHHhhh----hhhhhhhHHHHHHHHHHHHHhHH-----------------hhhhhhHHH------HHHhhHH
Q 012561 316 VHEVASMRVELQQV----RDDRDHQLSQVQALTAEVIKHKE-----------------LAVSSEDLE------ARCASQS 368 (461)
Q Consensus 316 ~~Ev~~LR~ELqqv----RdDRDr~~~QvqsL~aE~~~ykE-----------------l~~k~~~LE------etCssQ~ 368 (461)
.|+..|=.+++++ +..|..+.+||++|..++..|.. +-...+.|- ..|++-.
T Consensus 292 -~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk~ief~~se~a~~~ 370 (629)
T KOG0963|consen 292 -SEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSRSDYEEIKKELSILKAIEFGDSEEANDE 370 (629)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhhcCCccccccc
Confidence 3444455555554 46788999999999999988876 111111111 3455444
Q ss_pred -HHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhhhhHHhHHhhhhhhh
Q 012561 369 -NQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTIL 435 (461)
Q Consensus 369 -eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~kiiEGEkLRKKLHNTIL 435 (461)
+..++|.-.|...|.||.--..+.--+-+++.+ .|.+++-+-.+.+.++-+|..+=-||-+-+.
T Consensus 371 ~~~~~~leslLl~knr~lq~e~a~Lr~~n~~~~~---~~~~~~~~~~el~~~~~~~ke~i~klE~dl~ 435 (629)
T KOG0963|consen 371 DETAKTLESLLLEKNRKLQNENASLRVANSGLSG---RITELSKKGEELEAKATEQKELIAKLEQDLL 435 (629)
T ss_pred ccccchHHHHHHHHHhhhhHHHHHHhccccccch---hHHHHHhhhhhhHHHHHHHHHHHHHHHhhHh
Confidence 788899999999999887665555444444444 6666777777777777777777666666654
No 56
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=96.51 E-value=2.5 Score=49.33 Aligned_cols=141 Identities=21% Similarity=0.250 Sum_probs=97.3
Q ss_pred hhHHHHHHHHHHHHHHHh---------hHHHH--HH-HHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHH
Q 012561 135 DYAFEHERLRNALELSEQ---------KCAEM--EL-ALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAR 202 (461)
Q Consensus 135 ~y~~EqekL~~~Le~~ek---------~~~e~--E~-~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~k 202 (461)
.|..|+|+|++.|-+++. ++... |. .+..++++++.-+..+++++.++++.+.-+.-.+...-.-..+
T Consensus 408 d~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~ 487 (1041)
T KOG0243|consen 408 DLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEK 487 (1041)
T ss_pred HHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 688999999999998764 45333 33 5567888999999999999999999998665555554444444
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhh
Q 012561 203 EKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEK 275 (461)
Q Consensus 203 EkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eK 275 (461)
=+...........++-+++.+++..+.-..--|.-..-.-.-+..-++-||.|+..-|.|++...+.+.+..+
T Consensus 488 ~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~~~ 560 (1041)
T KOG0243|consen 488 LKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRKDR 560 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 4444455555556666666666666444433344444444455666888888888888888888877777654
No 57
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.46 E-value=0.83 Score=49.98 Aligned_cols=127 Identities=20% Similarity=0.281 Sum_probs=90.2
Q ss_pred hhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHH----HHHh-----
Q 012561 257 TKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMR----VELQ----- 327 (461)
Q Consensus 257 SkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR----~ELq----- 327 (461)
+.|++....+...++.++-|+.-|--..+.|+++...+..||+.....+.+.-.+..+|..|+..+. .||.
T Consensus 151 ~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~ 230 (546)
T KOG0977|consen 151 SELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRK 230 (546)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 4567777777777777777777777777777777777777888888888888888888888877766 3332
Q ss_pred -------------------hhhhhhhhhHHHHHHHHHHHHH----------------------hHH-----------hhh
Q 012561 328 -------------------QVRDDRDHQLSQVQALTAEVIK----------------------HKE-----------LAV 355 (461)
Q Consensus 328 -------------------qvRdDRDr~~~QvqsL~aE~~~----------------------ykE-----------l~~ 355 (461)
.+||-|+++-++++.-..|+.. ++| |..
T Consensus 231 ~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~ 310 (546)
T KOG0977|consen 231 ARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRA 310 (546)
T ss_pred HhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhh
Confidence 2445555555554443333221 223 889
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHHh
Q 012561 356 SSEDLEARCASQSNQIRSLSDQLAAAEE 383 (461)
Q Consensus 356 k~~~LEetCssQ~eqI~~Lq~QLa~A~e 383 (461)
|...||..-+.-.++|..|+.||+--+.
T Consensus 311 klselE~~n~~L~~~I~dL~~ql~e~~r 338 (546)
T KOG0977|consen 311 KLSELESRNSALEKRIEDLEYQLDEDQR 338 (546)
T ss_pred hhccccccChhHHHHHHHHHhhhhhhhh
Confidence 9999999999999999999999876543
No 58
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.45 E-value=3.6 Score=50.51 Aligned_cols=211 Identities=21% Similarity=0.249 Sum_probs=103.8
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHhHh--------------HHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhh---
Q 012561 212 RSHASLSEDLGKAQEELQSANQRIAS--------------INDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGE--- 274 (461)
Q Consensus 212 ~~~~~LseeL~k~q~E~~~anqqi~s--------------lqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~e--- 274 (461)
+....+..+|++...+..=|..++.+ |..-|+-||.|...=+|-+..+=.+|..+++.++++.
T Consensus 668 ~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev 747 (1822)
T KOG4674|consen 668 KEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAEL 747 (1822)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33344444555554444444444444 4445555666666666666677777777777666654
Q ss_pred ----hHHHHHHHhhhhhhhh-------hhhHHHHHHHhHhhHH------HHH-----HhhHHHHHHHHHHHHHHhhhhhh
Q 012561 275 ----KEKSAIVENLSTLRGQ-------YISLQEQLSTYKASQD------EAM-----RQKDALVHEVASMRVELQQVRDD 332 (461)
Q Consensus 275 ----KEK~tivEnls~LrG~-------~~SLq~QL~~skaSq~------Ea~-----kQK~~L~~Ev~~LR~ELqqvRdD 332 (461)
+||..+..+=..|... +.+|+.-|+...+.+. .|+ .+.+.|.+++.-||.+|+.-++|
T Consensus 748 ~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~ 827 (1822)
T KOG4674|consen 748 SNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSD 827 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443332222221 1222222222222111 111 35577888888888777766555
Q ss_pred hhhhHHHHHHHHHHHH-HhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhh--------hhhhh----hh
Q 012561 333 RDHQLSQVQALTAEVI-KHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSA--------LETKT----EF 399 (461)
Q Consensus 333 RDr~~~QvqsL~aE~~-~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa--------~etrt----e~ 399 (461)
+-..-.....=..+.. ...+++.....+=+--++++..|..|+.++.--+.+|+-.+.-. .+.-+ .+
T Consensus 828 ~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~L 907 (1822)
T KOG4674|consen 828 LRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTL 907 (1822)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHH
Confidence 4332221111000000 01113333334445566777778888888777777776543211 11111 12
Q ss_pred HHhHHHHHHHHHhHHHHhhhhhh
Q 012561 400 EGQKKLINELRNHLEDAEYKLIE 422 (461)
Q Consensus 400 E~Qk~~i~eLq~RLadaE~kiiE 422 (461)
..=...+.+|..+|.+|..+|-+
T Consensus 908 r~~~eq~~~l~~~L~~a~s~i~~ 930 (1822)
T KOG4674|consen 908 RKELEEITDLKEELTDALSQIRE 930 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 22234555666777777766654
No 59
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.37 E-value=2.8 Score=48.22 Aligned_cols=180 Identities=22% Similarity=0.292 Sum_probs=120.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhh---ccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhh
Q 012561 216 SLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQ---KDIDAAHESIKRGEKEKSAIVENLSTLRGQYI 292 (461)
Q Consensus 216 ~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQ---aDl~~~~e~~~r~eKEK~tivEnls~LrG~~~ 292 (461)
.+...-+|-|.++-..|.+.+.++- +|--.|--+||.-.+|| .|++++...|.-+-|-...++-.++.|.-..+
T Consensus 420 em~~Qk~reqe~iv~~nak~~ql~~---eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarik 496 (1118)
T KOG1029|consen 420 EMLNQKNREQEWIVYLNAKKKQLQQ---ELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIK 496 (1118)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3444555555665555555555443 44445667888888887 58999999999999999999999999988888
Q ss_pred hHHH---HHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhH----HHHHHHHHHHHH-hHH---hhhhhhHHH
Q 012561 293 SLQE---QLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQL----SQVQALTAEVIK-HKE---LAVSSEDLE 361 (461)
Q Consensus 293 SLq~---QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~----~QvqsL~aE~~~-ykE---l~~k~~~LE 361 (461)
.+|+ +|+--+.-.++-+||+.....+-..-..+|...|..||-.. -|+..|+.|... |.| +.....+|-
T Consensus 497 E~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk 576 (1118)
T KOG1029|consen 497 ELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELK 576 (1118)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 7775 56777888899999998877766665666666666555433 344555555443 333 455555666
Q ss_pred HHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHH
Q 012561 362 ARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEG 401 (461)
Q Consensus 362 etCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~ 401 (461)
+..++|.- ..++-..+.-.||+.+.-++.|-+.+|+.
T Consensus 577 ~~~~~q~l---ake~~yk~e~d~~ke~et~~lel~~~ke~ 613 (1118)
T KOG1029|consen 577 EDVNSQQL---AKEELYKNERDKLKEAETKALELIGEKEA 613 (1118)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 66666533 34444555666777777777776666653
No 60
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.15 E-value=2.7 Score=46.11 Aligned_cols=96 Identities=21% Similarity=0.309 Sum_probs=69.4
Q ss_pred CCccccc--HHHHH-HHHhhhhhccCCCChHHhhHhHHHHHHHHHHHHHHHHHhh--------hhhHHHHHHHHHHHHHH
Q 012561 82 CGTIEFT--REDVE-ALLSEKMRYKNKFNYKERCENMMDYIKRLRLCIKWFQELE--------GDYAFEHERLRNALELS 150 (461)
Q Consensus 82 ~~~ieFt--redVe-ALLnEKmk~k~KfdyKgr~EqM~dyIKrLr~CIrWfqelE--------~~y~~EqekL~~~Le~~ 150 (461)
..+|.-+ +|-.| ..||-|.. +|-+|.-+|=.=..+|..=|.-|+..- ..|-.|+-.++..|+.+
T Consensus 30 as~ir~sR~rEK~El~~LNDRLA-----~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~ 104 (546)
T KOG0977|consen 30 ASPIRDSREREKKELQELNDRLA-----VYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDET 104 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHH
Confidence 3455555 33333 68999998 888999999888899999998888754 45788999999999999
Q ss_pred HhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHH
Q 012561 151 EQKCAEMELALRNKEEELNLIIVELRKSFASLQEKL 186 (461)
Q Consensus 151 ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L 186 (461)
.+.++..|....- |..-+.+|++.+...+..+
T Consensus 105 ~~~ra~~e~ei~k----l~~e~~elr~~~~~~~k~~ 136 (546)
T KOG0977|consen 105 ARERAKLEIEITK----LREELKELRKKLEKAEKER 136 (546)
T ss_pred HHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHH
Confidence 9999988876554 3344445555555554333
No 61
>PRK11281 hypothetical protein; Provisional
Probab=96.14 E-value=4.1 Score=47.97 Aligned_cols=80 Identities=19% Similarity=0.221 Sum_probs=60.6
Q ss_pred hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHH-----HHHHHHHhHHHHhhhhhhhHHhH
Q 012561 353 LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKK-----LINELRNHLEDAEYKLIEGEKLR 427 (461)
Q Consensus 353 l~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~-----~i~eLq~RLadaE~kiiEGEkLR 427 (461)
++.+.|.|-..-.--++++..+.+.+..-+|.+.+-..|..-.+.=|..+.. .+++|.++.||.-.+.++=+..|
T Consensus 297 ~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l~~s~~l~~~l~~q~~~LP~~~~~~~l~~~iAdlrl~~f~~~q~~ 376 (1113)
T PRK11281 297 ATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVLKGSLLLSRILYQQQQALPSADLIEGLADRIADLRLEQFEINQQR 376 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHHHHHHH
Confidence 5556666655444555677778888888889999999999999988877665 46779999998888888877777
Q ss_pred Hhhhh
Q 012561 428 KRLHN 432 (461)
Q Consensus 428 KKLHN 432 (461)
..|++
T Consensus 377 ~~l~~ 381 (1113)
T PRK11281 377 DALFQ 381 (1113)
T ss_pred HHhcC
Confidence 66654
No 62
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.11 E-value=0.42 Score=42.27 Aligned_cols=117 Identities=19% Similarity=0.277 Sum_probs=69.0
Q ss_pred HHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Q 012561 264 DAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQAL 343 (461)
Q Consensus 264 ~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL 343 (461)
......+.++..........+..++....+......-+...-.-.+-.+-+.+.++..||.+++.++......-..+.+.
T Consensus 6 ~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a 85 (132)
T PF07926_consen 6 SSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESA 85 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444445444444333333333333333333555556667777777777777766666666666666
Q ss_pred HHHHHHhHH--------hhhhhhHHHHHHhhHHHHHHHHHHHHHH
Q 012561 344 TAEVIKHKE--------LAVSSEDLEARCASQSNQIRSLSDQLAA 380 (461)
Q Consensus 344 ~aE~~~ykE--------l~~k~~~LEetCssQ~eqI~~Lq~QLa~ 380 (461)
...+...+. |......++.+|.--..|=+.|-.||..
T Consensus 86 ~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 86 KAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666654444 6777788888888888888888888764
No 63
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.11 E-value=1.7 Score=50.82 Aligned_cols=178 Identities=17% Similarity=0.250 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHH---HHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHH
Q 012561 136 YAFEHERLRNALELSEQKCAEMELALRNKEEELNLII---VELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMER 212 (461)
Q Consensus 136 y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i---~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~ 212 (461)
+-.+.++..+.++.++++..++|+++-....|-+..= .++|+.+.-+--....++.+.-.+-.++.+-+...-..++
T Consensus 300 l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k 379 (1074)
T KOG0250|consen 300 LQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEK 379 (1074)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666666666655555554433 3333333333334445555555555555555555555555
Q ss_pred HHhhhHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhh
Q 012561 213 SHASLSEDL-GKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQY 291 (461)
Q Consensus 213 ~~~~LseeL-~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~ 291 (461)
-.+.+.+++ +.++. ++..++|=++.|+.=+--||--++.|-..+....+.+...+.|+.+|-.-+.+|+-..
T Consensus 380 ~I~~~~~~~~~~~~~-------~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i 452 (1074)
T KOG0250|consen 380 QIADLEKQTNNELGS-------ELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKI 452 (1074)
T ss_pred HHHHHHHHHHhhhhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 544444444 33333 3333334444444444444445556666777777778888888888877777777777
Q ss_pred hhHHHHHHHhHhhHHHHHH----hhHHHHHHHH
Q 012561 292 ISLQEQLSTYKASQDEAMR----QKDALVHEVA 320 (461)
Q Consensus 292 ~SLq~QL~~skaSq~Ea~k----QK~~L~~Ev~ 320 (461)
.-.+.+|...+..+...+. ....|+.++.
T Consensus 453 ~~~~~~l~~lk~~k~dkvs~FG~~m~~lL~~I~ 485 (1074)
T KOG0250|consen 453 ENISEELKDLKKTKTDKVSAFGPNMPQLLRAIE 485 (1074)
T ss_pred HHHHHHHHHHHhcccchhhhcchhhHHHHHHHH
Confidence 7777777777777776664 3444555544
No 64
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.08 E-value=3 Score=45.94 Aligned_cols=198 Identities=19% Similarity=0.222 Sum_probs=137.8
Q ss_pred ChHHhhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHH
Q 012561 107 NYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKL 186 (461)
Q Consensus 107 dyKgr~EqM~dyIKrLr~CIrWfqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L 186 (461)
+....++.|-++|+.|+..++-.-+--...-.+.+.+..++. ..++-.++-..-.+.++.|+..+..-..+...|+.+.
T Consensus 339 ~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~-l~~k~~~lL~d~e~ni~kL~~~v~~s~~rl~~L~~qW 417 (594)
T PF05667_consen 339 ELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK-LKKKTVELLPDAEENIAKLQALVEASEQRLVELAQQW 417 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999998877666666666677766666 3444455544455667899999999999999999999
Q ss_pred hHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHH
Q 012561 187 AKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAA 266 (461)
Q Consensus 187 ~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~ 266 (461)
.+......+-++.++.....+. ..-..+-.++..++.+++.....|..-+++|+.|+.=..++-+= .+=++-..--
T Consensus 418 e~~R~pL~~e~r~lk~~~~~~~---~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~-~~Rs~Yt~RI 493 (594)
T PF05667_consen 418 EKHRAPLIEEYRRLKEKASNRE---SESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD-VNRSAYTRRI 493 (594)
T ss_pred HHHHhHHHHHHHHHHHHHhhcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCHHHHHHHH
Confidence 8888877777766665444332 22333568888899999999999999999988887655444332 2233444555
Q ss_pred HHHHhhhhhHHHHHHHhhh---hhhhhhhhHHHHHHHhHhhHHHHH
Q 012561 267 HESIKRGEKEKSAIVENLS---TLRGQYISLQEQLSTYKASQDEAM 309 (461)
Q Consensus 267 ~e~~~r~eKEK~tivEnls---~LrG~~~SLq~QL~~skaSq~Ea~ 309 (461)
.|.++-+.|-|..|---|. .|--..|+++.+|+-+=+-.||-+
T Consensus 494 lEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dEli 539 (594)
T PF05667_consen 494 LEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELI 539 (594)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 6777777777776654443 344455666667776666666655
No 65
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=96.08 E-value=1.1 Score=49.23 Aligned_cols=136 Identities=20% Similarity=0.345 Sum_probs=91.9
Q ss_pred HHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhH
Q 012561 197 LDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKE 276 (461)
Q Consensus 197 ~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKE 276 (461)
-+-+++|.+|+..++.-...|.+.|.|++.....+...|..|...|..--.==.+.|+| +.+|......
T Consensus 294 Yd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~----e~eL~el~~~------- 362 (570)
T COG4477 294 YDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKF----EKELKELESV------- 362 (570)
T ss_pred HHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHH----HHHHHHHHHH-------
Confidence 45678999999999999999999999999999999999999999986543333333433 2232222222
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Q 012561 277 KSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQAL 343 (461)
Q Consensus 277 K~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL 343 (461)
=..|.++++.=.-.|++||+-|.+......+.=+....+...+.+||.+=-+.||+=+|...++.+.
T Consensus 363 ~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~ei 429 (570)
T COG4477 363 LDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEI 429 (570)
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234444444344566666666665555555555556677778888888888888777666655543
No 66
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.08 E-value=0.85 Score=44.90 Aligned_cols=17 Identities=24% Similarity=0.571 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHhhhh
Q 012561 370 QIRSLSDQLAAAEEKLE 386 (461)
Q Consensus 370 qI~~Lq~QLa~A~eKLk 386 (461)
+|..++.++..++..+.
T Consensus 254 ~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 254 RLAELRERLNKARDRLQ 270 (423)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33333333333333333
No 67
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=96.05 E-value=3.6 Score=46.54 Aligned_cols=132 Identities=22% Similarity=0.331 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhh
Q 012561 121 RLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSL 200 (461)
Q Consensus 121 rLr~CIrWfqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~ 200 (461)
+|+-|.--|++||+.|-.|.---..+.....-+|.+-|..| ..|..-+.+-+..|+.|||.-.. +.|
T Consensus 216 KlKE~~~k~~~leeey~~E~n~kEkqvs~L~~q~~eKen~~----kdl~~~l~es~~~~~qLeE~~~~-q~E-------- 282 (786)
T PF05483_consen 216 KLKEDYEKFEDLEEEYKKEVNDKEKQVSLLQTQLKEKENKI----KDLLLLLQESQDKCNQLEEKTKE-QHE-------- 282 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHhHH----HHHHHHHHHHHHHHHHHHHHHHH-HHH--------
Confidence 56667777777777777665544444444444444444332 23445556667788888875321 111
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHH
Q 012561 201 AREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAI 280 (461)
Q Consensus 201 ~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~ti 280 (461)
-.-..-..+..|..+|+.++..++.+.. + | -.|+.|+.++..++-.+--||.+-
T Consensus 283 -----~Lkes~~~qe~L~~eL~~~K~slq~~~~-------t-----------q---~~le~~lq~~~k~~~qlt~eKe~~ 336 (786)
T PF05483_consen 283 -----NLKESNEEQEHLLQELEDIKQSLQESES-------T-----------Q---KALEEDLQQATKTLIQLTEEKEAQ 336 (786)
T ss_pred -----HHHHhHHhHHHHHHHHHHHHHHHHHHHH-------H-----------H---HHHHHHHHHHHHHHHHHHHhHHHH
Confidence 1112223355566666666555433211 1 1 245556666777777777777777
Q ss_pred HHhhhhhhhhh
Q 012561 281 VENLSTLRGQY 291 (461)
Q Consensus 281 vEnls~LrG~~ 291 (461)
||.++..+-.-
T Consensus 337 ~Ee~nk~k~~~ 347 (786)
T PF05483_consen 337 MEELNKAKAQH 347 (786)
T ss_pred HHHHHHHHHHH
Confidence 77766555433
No 68
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.05 E-value=3.7 Score=46.67 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=32.5
Q ss_pred hhhhhhHHhHHHHHHHHHhHHHHhhhhhhhHHhHHhhhhhhhhhccc
Q 012561 394 ETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILELEVN 440 (461)
Q Consensus 394 etrte~E~Qk~~i~eLq~RLadaE~kiiEGEkLRKKLHNTILELKGN 440 (461)
.++.|...-+..+...|..|.+-+..|-.-+-=|+|=---|++||.-
T Consensus 675 k~~~Eld~l~~qL~ssq~~L~e~d~~L~~le~Errk~lEE~l~mKqe 721 (775)
T PF10174_consen 675 KLRQELDQLKAQLESSQQSLMERDQELNALEAERRKQLEEVLEMKQE 721 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45777777777888888888877766655444445555568888853
No 69
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.02 E-value=0.16 Score=44.93 Aligned_cols=113 Identities=26% Similarity=0.335 Sum_probs=72.9
Q ss_pred hhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHH
Q 012561 292 ISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQI 371 (461)
Q Consensus 292 ~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI 371 (461)
.+|+..+...+....++..+-..+..++.....-.+.+.+. ...|+.+.-+.+.....|.+.++.-..+|
T Consensus 6 ~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~----------YE~El~~Ha~~~~~L~~lr~e~~~~~~~~ 75 (132)
T PF07926_consen 6 SSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQK----------YERELVKHAEDIKELQQLREELQELQQEI 75 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444333333222 34455555556667777778888888899
Q ss_pred HHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHh
Q 012561 372 RSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAE 417 (461)
Q Consensus 372 ~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE 417 (461)
..|+.....|+..|.-+..|..+.+..|+.. |.+++.|+.|..
T Consensus 76 ~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e---~~~~~~r~~dL~ 118 (132)
T PF07926_consen 76 NELKAEAESAKAELEESEASWEEQKEQLEKE---LSELEQRIEDLN 118 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 9999999999999999888888888877754 566777777743
No 70
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.00 E-value=2 Score=43.16 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHH
Q 012561 136 YAFEHERLRNALELSEQKCAEMELA 160 (461)
Q Consensus 136 y~~EqekL~~~Le~~ek~~~e~E~~ 160 (461)
|-+=...|+.-|...++-..++|.+
T Consensus 73 y~~~c~EL~~~I~egr~~~~~~E~~ 97 (325)
T PF08317_consen 73 YQFSCRELKKYISEGRQIFEEIEEE 97 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555443
No 71
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=95.91 E-value=2.4 Score=43.40 Aligned_cols=207 Identities=18% Similarity=0.290 Sum_probs=102.7
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHH----------HH
Q 012561 212 RSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSA----------IV 281 (461)
Q Consensus 212 ~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~t----------iv 281 (461)
.-++.+.+++..++.+..-.|..+.- +|+-.-+|-...=-|| ..+.++..-...|.++++---| +|
T Consensus 62 ~~rdeineev~elK~kR~ein~kl~e---L~~~~~~l~e~~~~~~-~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lv 137 (294)
T COG1340 62 EERDEINEEVQELKEKRDEINAKLQE---LRKEYRELKEKRNEFN-LGGRSIKSLEREIERLEKKQQTSVLTPEEERELV 137 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhh-ccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 34556777777777777777766544 5665666666777777 8899999999999999876554 55
Q ss_pred HhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHH
Q 012561 282 ENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLE 361 (461)
Q Consensus 282 Enls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LE 361 (461)
+.++.|+-.+..-+.++... ..-.+-..+-+.+..+...++.+++...++=+.+--+.-.+-.+...++. +.+.+=
T Consensus 138 q~I~~L~k~le~~~k~~e~~-~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rk---eade~h 213 (294)
T COG1340 138 QKIKELRKELEDAKKALEEN-EKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRK---EADELH 213 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 55665555443333333322 11222223333333444444444443333333333333333322222222 333333
Q ss_pred HHHhhHHHHHHHHHHHHHHHHhhhhhhch--hhhhhhhhhHHhHHHHHHHHHhHHHHhhhhhhhHHh
Q 012561 362 ARCASQSNQIRSLSDQLAAAEEKLEVSDL--SALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKL 426 (461)
Q Consensus 362 etCssQ~eqI~~Lq~QLa~A~eKLk~aDl--sa~etrte~E~Qk~~i~eLq~RLadaE~kiiEGEkL 426 (461)
+...--...|..+...+......|.=.|- .+..+.-.--.-....++++.|..++--++-.|++|
T Consensus 214 e~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~~~~~~~~~ee~kera~ei~EKfk~GekL 280 (294)
T COG1340 214 EEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAKRREKREELKERAEEIYEKFKRGEKL 280 (294)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 33333333333333333333333322222 111111111111223347777777777777777776
No 72
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.91 E-value=1.2 Score=43.77 Aligned_cols=49 Identities=12% Similarity=0.262 Sum_probs=28.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHh
Q 012561 305 QDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKEL 353 (461)
Q Consensus 305 q~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl 353 (461)
+...-.++..+..++..++.++.+.+..-+..-.++..+..++..++.|
T Consensus 139 ~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L 187 (423)
T TIGR01843 139 KSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKL 187 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555556666666666666655555555666666666666553
No 73
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.63 E-value=6 Score=45.86 Aligned_cols=234 Identities=23% Similarity=0.281 Sum_probs=121.6
Q ss_pred HHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHH---HHHhhHHH-HHHHHHHHHHHhhhHHHH
Q 012561 146 ALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLA---ALDSLARE-KETRLNMERSHASLSEDL 221 (461)
Q Consensus 146 ~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~---a~~s~~kE-kEaR~~~E~~~~~LseeL 221 (461)
.++...+...+.+.-++--.-+|+.-.-++..++.-||-++..-|++|.. ++..+... ||+....|. ++-+|
T Consensus 75 iie~sk~vstqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~----~~srl 150 (1265)
T KOG0976|consen 75 IIEQSKKVSTQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIEN----LNSRL 150 (1265)
T ss_pred hhhhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHH
Confidence 44555555566666666666666666666666666666666666666653 33333222 333333443 33444
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHH----hhhhhHH--------------------
Q 012561 222 GKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESI----KRGEKEK-------------------- 277 (461)
Q Consensus 222 ~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~----~r~eKEK-------------------- 277 (461)
.+.-.++.+--+.|-++- +-|-.-|+-|--+|+-+|.-++.+++.. -+++|=|
T Consensus 151 h~le~eLsAk~~eIf~~~---~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~t 227 (1265)
T KOG0976|consen 151 HKLEDELSAKAHDIFMIG---EDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENT 227 (1265)
T ss_pred HHHHHHHhhhhHHHHHHH---HHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 444455544444444432 2233333333333333333222222211 1122211
Q ss_pred ----------HHHHHhhhhhhhhhhhHHHHH-----------------HHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhh
Q 012561 278 ----------SAIVENLSTLRGQYISLQEQL-----------------STYKASQDEAMRQKDALVHEVASMRVELQQVR 330 (461)
Q Consensus 278 ----------~tivEnls~LrG~~~SLq~QL-----------------~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvR 330 (461)
++=.++|.-||-...-+.+|- ..-.+-..+..-||+.+++|....=.+|+|.|
T Consensus 228 q~vl~ev~QLss~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~ 307 (1265)
T KOG0976|consen 228 QKVLKEVMQLSSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTR 307 (1265)
T ss_pred HHHHHHHHHHHHhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 122244555555555454443 33344455667788899999888888888887
Q ss_pred hhhhhhHHHHH-HHHHHHHHhHH------------------hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhh
Q 012561 331 DDRDHQLSQVQ-ALTAEVIKHKE------------------LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLE 386 (461)
Q Consensus 331 dDRDr~~~Qvq-sL~aE~~~ykE------------------l~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk 386 (461)
--=|.-..|.- -|-.|+.+.+- +--|.++||-.-..--.-.+.+|+.+..-.+-|+
T Consensus 308 t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elq 382 (1265)
T KOG0976|consen 308 TRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQ 382 (1265)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 66665554432 23444444433 5566677777666666666677766665555443
No 74
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=95.56 E-value=0.011 Score=64.32 Aligned_cols=185 Identities=28% Similarity=0.351 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHH
Q 012561 218 SEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQ 297 (461)
Q Consensus 218 seeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~Q 297 (461)
.+++.++..+...+-++...++.....|++=+.+||.=|..|+.-++....... ......---++.||.+...|++.
T Consensus 178 ~~~l~~~~~e~d~l~q~~~el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~---~~~~~~~~~~~~l~~ql~~L~~e 254 (713)
T PF05622_consen 178 YEELSRLVAERDELAQRCHELEKQISDLQEEKESLQSENEELQERLSQLEGSSE---EPSQHLSVELADLRAQLRRLREE 254 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCC---CcchHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555544444445555566666666666655444321100 00111111233344444444443
Q ss_pred HHHhHhhHHHH-------------HHh----hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH-------h
Q 012561 298 LSTYKASQDEA-------------MRQ----KDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE-------L 353 (461)
Q Consensus 298 L~~skaSq~Ea-------------~kQ----K~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE-------l 353 (461)
|.-.-...++. ++| --..+.++..||.||.-+|...| ++..|.++|.+||+ +
T Consensus 255 l~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~----r~~klE~~ve~YKkKLed~~~l 330 (713)
T PF05622_consen 255 LERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKAD----RADKLENEVEKYKKKLEDLEDL 330 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 33222111111 111 11233555666666666665555 48899999999999 8
Q ss_pred hhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhh
Q 012561 354 AVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKL 420 (461)
Q Consensus 354 ~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~ki 420 (461)
..++..|++.+..=-+++..|+++|..+.. .+...+..++.|.+|+.++.+...++
T Consensus 331 k~qvk~Lee~N~~l~e~~~~LEeel~~~~~-----------~~~qle~~k~qi~eLe~~l~~~~~~~ 386 (713)
T PF05622_consen 331 KRQVKELEEDNAVLLETKAMLEEELKKARA-----------LKSQLEEYKKQIQELEQKLSEESRRA 386 (713)
T ss_dssp -------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999888899999999976653 45567778888888888887755443
No 75
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.52 E-value=2.2 Score=42.37 Aligned_cols=119 Identities=19% Similarity=0.292 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 012561 167 ELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQ 246 (461)
Q Consensus 167 EL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQ 246 (461)
.|...+..|.....+-++-|.+.++++-++.+.+..=..+-..++..-..+..||.++..-+.++..++..+- ..-
T Consensus 14 ~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~----~~~ 89 (239)
T COG1579 14 KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVK----DER 89 (239)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----cHH
Confidence 4555555555555566666666666666666666555555555555555555555555555555544443332 223
Q ss_pred HHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHH
Q 012561 247 EYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQ 297 (461)
Q Consensus 247 EYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~Q 297 (461)
+|| .|+.+.+++.+.+..++.|=+-+++-...|.+...+++..
T Consensus 90 e~~--------aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~ 132 (239)
T COG1579 90 ELR--------ALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKER 132 (239)
T ss_pred HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 3445555555555555544444444444444444333333
No 76
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=95.37 E-value=3.5 Score=42.78 Aligned_cols=25 Identities=12% Similarity=0.247 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhchhh
Q 012561 368 SNQIRSLSDQLAAAEEKLEVSDLSA 392 (461)
Q Consensus 368 ~eqI~~Lq~QLa~A~eKLk~aDlsa 392 (461)
+.+|..++.+|+.|+..|....+.|
T Consensus 297 ~~~l~~~~~~l~~a~~~l~~~~I~A 321 (457)
T TIGR01000 297 NQKLLELESKIKSLKEDSQKGVIKA 321 (457)
T ss_pred HHHHHHHHHHHHHHHHHHhCCEEEC
Confidence 3466777777777777776655554
No 77
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.37 E-value=0.5 Score=46.81 Aligned_cols=120 Identities=22% Similarity=0.301 Sum_probs=81.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhh
Q 012561 307 EAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLE 386 (461)
Q Consensus 307 Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk 386 (461)
.--.+++.+......-+.+|..++.+.++.-.-+.++..++..|+. ....+ ...|+.++.+++.+.+|+
T Consensus 14 ~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~---qv~~~-------e~ei~~~r~r~~~~e~kl- 82 (239)
T COG1579 14 KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLEN---QVSQL-------ESEIQEIRERIKRAEEKL- 82 (239)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-------HHHHHHHHHHHHHHHHHH-
Confidence 4445666666777777777777777766666666666666666655 22222 234555555555555555
Q ss_pred hhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhhhhHHhHHhhhhhhhhhcccc
Q 012561 387 VSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILELEVNL 441 (461)
Q Consensus 387 ~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~kiiEGEkLRKKLHNTILELKGNI 441 (461)
++.-++-+|..-..-+..+++|+..+|..|.+=...+.+|-+-|..|++-|
T Consensus 83 ----~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~ 133 (239)
T COG1579 83 ----SAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERL 133 (239)
T ss_pred ----hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778888888888888888888888888888888887777776644
No 78
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=95.28 E-value=1.6 Score=37.20 Aligned_cols=109 Identities=21% Similarity=0.282 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhH
Q 012561 139 EHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLS 218 (461)
Q Consensus 139 EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~Ls 218 (461)
|....+-+|+.-...+...+..+....++|...-..|+.++.....=|..-++....|+.....|...+...+..
T Consensus 8 e~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~e----- 82 (126)
T PF13863_consen 8 EMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAE----- 82 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 444567788899999999999999999999999999999999999999999999999999999998877766554
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHh
Q 012561 219 EDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQH 254 (461)
Q Consensus 219 eeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQ 254 (461)
|.+++.++..+...+.-+++....++.|..=|++
T Consensus 83 --i~~l~~~l~~l~~~~~k~e~~l~~~~~Y~~fL~~ 116 (126)
T PF13863_consen 83 --IKKLKAELEELKSEISKLEEKLEEYKKYEEFLEK 116 (126)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555666667777777788777765
No 79
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=95.21 E-value=0.65 Score=42.22 Aligned_cols=109 Identities=16% Similarity=0.281 Sum_probs=60.5
Q ss_pred HHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHH
Q 012561 229 QSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEA 308 (461)
Q Consensus 229 ~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea 308 (461)
.+.+..+...+....++++.-..+|.|+..+++++....+........+...-+.+..++..+..+...+.-..
T Consensus 77 ~~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~------ 150 (191)
T PF04156_consen 77 PRLQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ------ 150 (191)
T ss_pred hhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 33444455555555666666667777777788877777777666666666655555555555544444443333
Q ss_pred HHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 012561 309 MRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALT 344 (461)
Q Consensus 309 ~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~ 344 (461)
+.-.+...++..++.++.+.+.+.++...+++.+.
T Consensus 151 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 185 (191)
T PF04156_consen 151 -KELQDSREEVQELRSQLERLQENLQQLEEKIQELQ 185 (191)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223334455555555555555544444444443
No 80
>PRK09039 hypothetical protein; Validated
Probab=95.19 E-value=2.2 Score=43.53 Aligned_cols=46 Identities=20% Similarity=0.262 Sum_probs=22.6
Q ss_pred hhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhh
Q 012561 287 LRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDD 332 (461)
Q Consensus 287 LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdD 332 (461)
|+....+|+.||+...+..+++-.+-.+....+..|..+|+..-.+
T Consensus 142 L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 142 LNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444455555555555555555433
No 81
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=95.15 E-value=3.2 Score=39.81 Aligned_cols=95 Identities=15% Similarity=0.228 Sum_probs=57.1
Q ss_pred HHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHH---HhHHHHhhh
Q 012561 343 LTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELR---NHLEDAEYK 419 (461)
Q Consensus 343 L~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq---~RLadaE~k 419 (461)
+..++.+|.. -.+.++.+++.|..-|..+.. +++++...= +.... .......+..|. ....+.-..
T Consensus 195 f~~eL~k~~~---~~~~i~~~~~~Q~~ll~~i~~----~~~~~~~~~-~~~~~---~~~r~~~~~~l~~a~~~y~el~~~ 263 (296)
T PF13949_consen 195 FEEELKKFDP---LQNRIQQNLSKQEELLQEIQE----ANEEFAQSR-KSDQE---QKERESALQRLEAAYDAYKELSSN 263 (296)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----HHHHHHTTS---SHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHh-cccHH---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555554 466778888888877766554 444442111 11111 122222333332 334445556
Q ss_pred hhhhHHhHHhhhhhhhhhcccceeeeeec
Q 012561 420 LIEGEKLRKRLHNTILELEVNLSSSALFR 448 (461)
Q Consensus 420 iiEGEkLRKKLHNTILELKGNIRv~crvr 448 (461)
|-+|-+.=..|.+.|..|...|.-||--|
T Consensus 264 l~eG~~FY~~L~~~~~~l~~~~~~f~~~R 292 (296)
T PF13949_consen 264 LEEGLKFYNDLLEILNKLQQKVEDFCNAR 292 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77799999999999999999999998766
No 82
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.14 E-value=9.3 Score=45.07 Aligned_cols=148 Identities=14% Similarity=0.148 Sum_probs=108.6
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhh
Q 012561 212 RSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQY 291 (461)
Q Consensus 212 ~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~ 291 (461)
+.+--|+.+.+-++..+...-++...++|..|-|+.=+--||+-++.++.-++.. ++.--+++..+....-+.+.+
T Consensus 408 ke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq----~~e~e~~~q~ls~~~Q~~~et 483 (1195)
T KOG4643|consen 408 KEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQ----SLENEELDQLLSLQDQLEAET 483 (1195)
T ss_pred HHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHhHHHHHHHHHHHHHHHHH
Confidence 3334466677777788888888999999999999999999999888877655433 566667888899999999999
Q ss_pred hhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH----hhhhhhHHHHH
Q 012561 292 ISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE----LAVSSEDLEAR 363 (461)
Q Consensus 292 ~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE----l~~k~~~LEet 363 (461)
.-|+.+.-..+.+.++....-..|.....-|...+++.-.-=.-.-.+.+-|..++..|++ |.-++..|-.|
T Consensus 484 ~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t 559 (1195)
T KOG4643|consen 484 EELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTT 559 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 9999998888999999888888888888877777766532222223445566666666666 44444444444
No 83
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.09 E-value=10 Score=45.26 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=17.4
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH
Q 012561 319 VASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE 352 (461)
Q Consensus 319 v~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE 352 (461)
+..|..+|+++|...|....++..+..++..-.+
T Consensus 923 ~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~ 956 (1353)
T TIGR02680 923 VDEIRARLAETRAALASGGRELPRLAEALATAEE 956 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555544444333
No 84
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.08 E-value=4.9 Score=41.54 Aligned_cols=78 Identities=24% Similarity=0.368 Sum_probs=49.7
Q ss_pred hHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH
Q 012561 275 KEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE 352 (461)
Q Consensus 275 KEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE 352 (461)
-|+...|..|-.++-++..|+--+-+.-.--+|.+..+|....=+.+|=.||..+=-..++.+..|.+|-.|+--.+|
T Consensus 126 ~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~e 203 (319)
T PF09789_consen 126 HEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKE 203 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666666666666666666666666666555666666666666666666
No 85
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.04 E-value=7.2 Score=43.28 Aligned_cols=131 Identities=24% Similarity=0.328 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 012561 167 ELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQ 246 (461)
Q Consensus 167 EL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQ 246 (461)
.--+-+.+|+.+++.||+.|.+---+|++.-.++--|........+-...|.++|+.++.-+..-++-+.+++--+ .
T Consensus 157 RAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~---d 233 (617)
T PF15070_consen 157 RALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQR---D 233 (617)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH---H
Confidence 3345567999999999999999999999888888777766655544444555555555555444444455544422 2
Q ss_pred HHHhHHHhhhh------------------------hhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHH
Q 012561 247 EYNSSLQHYNT------------------------KLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLST 300 (461)
Q Consensus 247 EYNTSLQQYNS------------------------kLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~ 300 (461)
.|..-||||.. .||.+-......+....+|-...-|.|..+.-++--|+.||..
T Consensus 234 q~~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~qqNqqL~~qls~ 311 (617)
T PF15070_consen 234 QYLGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQQNQQLQAQLSL 311 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 36667777753 2222222122222233344455567788888888888888865
No 86
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=95.02 E-value=0.0063 Score=66.19 Aligned_cols=59 Identities=17% Similarity=0.313 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 012561 287 LRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTA 345 (461)
Q Consensus 287 LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~a 345 (461)
++++.-.++.|+.-......+..+..+.|..|...|+.++..+..++++...+.+.|..
T Consensus 361 ~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e 419 (713)
T PF05622_consen 361 LKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRE 419 (713)
T ss_dssp -----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666667777777777777778888888888888888888888877776666654
No 87
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.98 E-value=1.2 Score=48.91 Aligned_cols=146 Identities=21% Similarity=0.280 Sum_probs=89.8
Q ss_pred HHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH-------hhhhhhHHHHHHhhHHH
Q 012561 297 QLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE-------LAVSSEDLEARCASQSN 369 (461)
Q Consensus 297 QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE-------l~~k~~~LEetCssQ~e 369 (461)
.|...+.-.++...+.+.+..|++.|..++.|+.++..+.-.....+..++.-.+- --.-...|+.-|-+-.+
T Consensus 329 el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~ 408 (594)
T PF05667_consen 329 ELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASEQ 408 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 33333444455556667777888888888888888888888888888887775444 12334678889999899
Q ss_pred HHHHHHHHHHHHHhhhh----hhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhhhhHHh----------------HHh
Q 012561 370 QIRSLSDQLAAAEEKLE----VSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKL----------------RKR 429 (461)
Q Consensus 370 qI~~Lq~QLa~A~eKLk----~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~kiiEGEkL----------------RKK 429 (461)
.+..|+.|.....-.|. .--........++......|..+.....+.+..+-.-|.+ |.-
T Consensus 409 rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~ 488 (594)
T PF05667_consen 409 RLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSA 488 (594)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHH
Confidence 99999988877654332 1112222222333333344444444444444333333333 333
Q ss_pred hhhhhhhhcccce
Q 012561 430 LHNTILELEVNLS 442 (461)
Q Consensus 430 LHNTILELKGNIR 442 (461)
.-.-|+|+-||||
T Consensus 489 Yt~RIlEIv~NI~ 501 (594)
T PF05667_consen 489 YTRRILEIVKNIR 501 (594)
T ss_pred HHHHHHHHHHhHH
Confidence 4456999999996
No 88
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=94.96 E-value=3.8 Score=46.57 Aligned_cols=111 Identities=22% Similarity=0.173 Sum_probs=63.5
Q ss_pred HHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 012561 159 LALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKET---RLNMERSHASLSEDLGKAQEELQSANQRI 235 (461)
Q Consensus 159 ~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEa---R~~~E~~~~~LseeL~k~q~E~~~anqqi 235 (461)
+.+..+++|+..+....-.+|.||+.-+..-..=|..+.....-+.+. ..+.......|.++|+++..+...+.-.+
T Consensus 533 adLE~fieE~s~tLdwIls~~~SLqDv~s~~sEIK~~f~~~ss~e~E~~~~dea~~~~~~el~eelE~le~eK~~Le~~L 612 (769)
T PF05911_consen 533 ADLERFIEEFSLTLDWILSNCFSLQDVSSMRSEIKKNFDGDSSSEAEINSEDEADTSEKKELEEELEKLESEKEELEMEL 612 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHhhhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778999999999999999999993322222222222211112111 13444555677777777777776666666
Q ss_pred HhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHH
Q 012561 236 ASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHES 269 (461)
Q Consensus 236 ~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~ 269 (461)
.+.+|.++-++-==..+.+.=..||+.|..+.+.
T Consensus 613 ~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS 646 (769)
T PF05911_consen 613 ASCQDQLESLKNQLKESEQKLEELQSELESAKES 646 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655555544433333333334555555554433
No 89
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.87 E-value=2.1 Score=38.98 Aligned_cols=129 Identities=17% Similarity=0.220 Sum_probs=73.7
Q ss_pred hhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHh
Q 012561 286 TLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCA 365 (461)
Q Consensus 286 ~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCs 365 (461)
+||--....++..+.+.+-..+.=.....+-.||.+|..-++++=++-|..-.+++.+..-+..--. .....|
T Consensus 4 ~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~---~~~~~E---- 76 (143)
T PF12718_consen 4 ALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK---RKSNAE---- 76 (143)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHhHH----
Confidence 3344344444444444444444444455666777888777777777666665555555443332222 111222
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhh
Q 012561 366 SQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLI 421 (461)
Q Consensus 366 sQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~kii 421 (461)
+-..+|..|+++|..|..+|+-+.=..-++--..+.--+.+..|..+..+-|.++=
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~e 132 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYE 132 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHH
Confidence 44557888888877777777666655555555555555666666667666666653
No 90
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=94.81 E-value=5 Score=41.57 Aligned_cols=66 Identities=21% Similarity=0.263 Sum_probs=38.2
Q ss_pred hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhh---chhhhhhhhhhHHhHHHHHHHHHhHHHHhh
Q 012561 353 LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVS---DLSALETKTEFEGQKKLINELRNHLEDAEY 418 (461)
Q Consensus 353 l~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~a---Dlsa~etrte~E~Qk~~i~eLq~RLadaE~ 418 (461)
|......++..-.+...++..|+.+++..+..+.-. ......-..+++-.+..+..+..|+++++.
T Consensus 315 l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~ 383 (498)
T TIGR03007 315 LQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEV 383 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555566677777776666655421 112223345666677788888888888553
No 91
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=94.59 E-value=0.28 Score=53.80 Aligned_cols=99 Identities=16% Similarity=0.247 Sum_probs=40.7
Q ss_pred HHHHHhhhhhhhhhhHHHHHHHHHHHHH------hHH-----hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhh---
Q 012561 322 MRVELQQVRDDRDHQLSQVQALTAEVIK------HKE-----LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEV--- 387 (461)
Q Consensus 322 LR~ELqqvRdDRDr~~~QvqsL~aE~~~------ykE-----l~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~--- 387 (461)
||.++...+.+.++.-.++..|..++.. |.. |..+.|=.-.---.....+..|+..-+.-..+++.
T Consensus 508 L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~le~ 587 (722)
T PF05557_consen 508 LQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARLRSLEE 587 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3333333333344444455566666654 222 33333333222233344555565555444444411
Q ss_pred -hch-hhhhhhhhhHHhHHHHHHHHHhHHHHhhhh
Q 012561 388 -SDL-SALETKTEFEGQKKLINELRNHLEDAEYKL 420 (461)
Q Consensus 388 -aDl-sa~etrte~E~Qk~~i~eLq~RLadaE~ki 420 (461)
.+. ........|.....-|.+|+.-++.+|.+.
T Consensus 588 ~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~ 622 (722)
T PF05557_consen 588 GNSQPVDAVPTSSLESQEKEIAELKAELASAEKRN 622 (722)
T ss_dssp TT----------------HHHHHHHHHHHHHHHHH
T ss_pred CCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 011 111123445566666788888888877654
No 92
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=94.47 E-value=15 Score=44.25 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=17.5
Q ss_pred hhhhhhHHHHHHhhHHHHHHHHHHHHH
Q 012561 353 LAVSSEDLEARCASQSNQIRSLSDQLA 379 (461)
Q Consensus 353 l~~k~~~LEetCssQ~eqI~~Lq~QLa 379 (461)
+....+.+.+.|.-=..+|..++.||.
T Consensus 1053 l~se~~~~lg~~ke~e~~i~~~k~eL~ 1079 (1294)
T KOG0962|consen 1053 LSSEKNLLLGEMKQYESQIKKLKQELR 1079 (1294)
T ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 455556666666666666666666665
No 93
>PRK11281 hypothetical protein; Provisional
Probab=94.45 E-value=2.9 Score=49.15 Aligned_cols=127 Identities=16% Similarity=0.076 Sum_probs=71.1
Q ss_pred hhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhh-hhhHHHHHHHHHHHHHh
Q 012561 272 RGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDR-DHQLSQVQALTAEVIKH 350 (461)
Q Consensus 272 r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDR-Dr~~~QvqsL~aE~~~y 350 (461)
.++.+-...-+.|+++-....+++.+.+.+.+...++..+...+ |..|+.....- .=.-++...|.+|...+
T Consensus 132 q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI-------~~~L~~~~~~~~~l~~~~~~~l~ae~~~l 204 (1113)
T PRK11281 132 QTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQI-------RNLLKGGKVGGKALRPSQRVLLQAEQALL 204 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHH-------HHHHhCCCCCCCcCCHHHHHHHHHHHHHH
Confidence 33334444445566666655555556555555555555444433 33343322111 11123466777777777
Q ss_pred HHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHH-----hHHHHhhhhhh
Q 012561 351 KELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRN-----HLEDAEYKLIE 422 (461)
Q Consensus 351 kEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~-----RLadaE~kiiE 422 (461)
+- |+..+++.|..++......-+.......+.+.+...|..||+ |++++|.++=+
T Consensus 205 ~~-----------------~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~~se~~~~~ 264 (1113)
T PRK11281 205 NA-----------------QNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSEKTVQE 264 (1113)
T ss_pred HH-----------------HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 566666666666666666666666666677767777776664 45556665533
No 94
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=94.39 E-value=0.03 Score=61.05 Aligned_cols=105 Identities=24% Similarity=0.301 Sum_probs=15.2
Q ss_pred HHhhHHHHHHHHHHHHHHhhhhhhhh---------hhHHHHHHHHHHHHHhHH-hhhhhhHHHHHHhhHHHHHHHHHHHH
Q 012561 309 MRQKDALVHEVASMRVELQQVRDDRD---------HQLSQVQALTAEVIKHKE-LAVSSEDLEARCASQSNQIRSLSDQL 378 (461)
Q Consensus 309 ~kQK~~L~~Ev~~LR~ELqqvRdDRD---------r~~~QvqsL~aE~~~ykE-l~~k~~~LEetCssQ~eqI~~Lq~QL 378 (461)
=+|+--+.+|+..||.-|.-.-.+=. +.+..+..|...+..|+. +...+..|+..-+.+......+...+
T Consensus 405 erq~~L~~kE~d~LR~~L~syd~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ele~~l~~l~~~l~~~k~~~~~~~~e~ 484 (722)
T PF05557_consen 405 ERQKALATKERDYLRAQLKSYDKEETTMNPSEQDTQRIKEIEDLEQLVDEYKAELEAQLEELEEELSEQKQRNETLEAEL 484 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccccCchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhh
Confidence 35566667788888877765432211 111123333333444433 44456677777777777777777777
Q ss_pred HHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhH
Q 012561 379 AAAEEKLEVSDLSALETKTEFEGQKKLINELRNHL 413 (461)
Q Consensus 379 a~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RL 413 (461)
...+..+.-.+-+.+.+...+..-+..|.+|+.-+
T Consensus 485 ~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~ 519 (722)
T PF05557_consen 485 KSLKEQLSSNDRSLSSLSEELNELQKEIEELEREN 519 (722)
T ss_dssp ---------HHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 77666666666655555555555666666665443
No 95
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=94.33 E-value=7.6 Score=40.35 Aligned_cols=73 Identities=15% Similarity=0.187 Sum_probs=38.1
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHh-hhhhhhhhhHHHHHHHHHHHHHhHH
Q 012561 278 SAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQ-QVRDDRDHQLSQVQALTAEVIKHKE 352 (461)
Q Consensus 278 ~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELq-qvRdDRDr~~~QvqsL~aE~~~ykE 352 (461)
+.+...+..|++....++.+++.+++++.- ....++...+..++.+.. .+.++.+...+++..+.+++..++.
T Consensus 239 ~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~ 312 (457)
T TIGR01000 239 ATIQQQIDQLQKSIASYQVQKAGLTKSTAS--NYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKE 312 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCccc--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556555555555554443321 112223334444443333 5556666666777777777776666
No 96
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=94.01 E-value=7.7 Score=42.06 Aligned_cols=166 Identities=19% Similarity=0.221 Sum_probs=90.6
Q ss_pred HHHHHHHHH------HhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHH-----
Q 012561 122 LRLCIKWFQ------ELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEE----- 190 (461)
Q Consensus 122 Lr~CIrWfq------elE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~kee----- 190 (461)
+-+||-||. ..+..++.+.+.+...++..+.+...+.. .+...+.++..+..++..+..++..+..-+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~ 92 (475)
T PRK10361 14 VGVAIGWLFASYQHAQQKAEQLAEREEMVAELSAAKQQITQSEH-WRAECELLNNEVRSLQSINTSLEADLREVTTRMEA 92 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777865 34566777788888878777777665432 222233333333333333333333333222
Q ss_pred -----hhHHHHHHhhHH---------------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHH----HHHHHH
Q 012561 191 -----SDKLAALDSLAR---------------EKETRLNMERSHASLSEDLGKAQEELQSANQRIASIND----MYKLLQ 246 (461)
Q Consensus 191 -----seKl~a~~s~~k---------------EkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqD----myKRLQ 246 (461)
.+|++.+..... ++.. .-.+..+.+|..=|.=++..+..+.++|..+.. -|-.|.
T Consensus 93 ~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~-~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~ 171 (475)
T PRK10361 93 AQQHADDKIRQMINSEQRLSEQFENLANRIFEHSNR-RVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLA 171 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222221111 0000 111334444444455566666667666654432 134466
Q ss_pred HHHhHHHhhhhhhhccHHHHHHHHhhh--------hhHHHHHHHhhhhhhh
Q 012561 247 EYNSSLQHYNTKLQKDIDAAHESIKRG--------EKEKSAIVENLSTLRG 289 (461)
Q Consensus 247 EYNTSLQQYNSkLQaDl~~~~e~~~r~--------eKEK~tivEnls~LrG 289 (461)
+=..+|++.|.++..|+.....+++.- |--=..|+|..+..+|
T Consensus 172 ~qi~~L~~~n~~i~~ea~nLt~ALkgd~K~rG~WGE~qLerILE~sGL~~~ 222 (475)
T PRK10361 172 HEIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWGEVVLTRVLEASGLREG 222 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcchHHHHHHHHHHHhCCCcC
Confidence 667889999999999999988888642 2234578888766666
No 97
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=94.00 E-value=11 Score=41.15 Aligned_cols=154 Identities=22% Similarity=0.297 Sum_probs=107.5
Q ss_pred HHHHc-hHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHh
Q 012561 159 LALRN-KEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIAS 237 (461)
Q Consensus 159 ~~lk~-k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~s 237 (461)
++|+. |..-+--||.+|+.++.-|=|---+..-||-+.-.++..=.|+-.... ..|...+.|...+-=+++.
T Consensus 350 LQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tq-------k~LqEsr~eKetLqlelkK 422 (527)
T PF15066_consen 350 LQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQ-------KHLQESRNEKETLQLELKK 422 (527)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHH-------HHHHHHHhhHHHHHHHHHH
Confidence 34442 445566788888888888888777888888887777766666554443 3455666677777777777
Q ss_pred HHHHHHHHHH-HHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHH
Q 012561 238 INDMYKLLQE-YNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALV 316 (461)
Q Consensus 238 lqDmyKRLQE-YNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~ 316 (461)
+--=|-+||| |-|-+||-|-.+.-=++ +.+.--.|..=||-|-.|||... .+..++.+=.-+.|+.--
T Consensus 423 ~k~nyv~LQEry~~eiQqKnksvsqclE-----mdk~LskKeeeverLQ~lkgelE------kat~SALdlLkrEKe~~E 491 (527)
T PF15066_consen 423 IKANYVHLQERYMTEIQQKNKSVSQCLE-----MDKTLSKKEEEVERLQQLKGELE------KATTSALDLLKREKETRE 491 (527)
T ss_pred HhhhHHHHHHHHHHHHHHhhhHHHHHHH-----HHHHhhhhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 7778999997 99999999987665443 34455566777899999999422 333355666666777777
Q ss_pred HHHHHHHHHHhhhh
Q 012561 317 HEVASMRVELQQVR 330 (461)
Q Consensus 317 ~Ev~~LR~ELqqvR 330 (461)
-|+-+|..|+|+--
T Consensus 492 qefLslqeEfQk~e 505 (527)
T PF15066_consen 492 QEFLSLQEEFQKHE 505 (527)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777777643
No 98
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=93.89 E-value=3.8 Score=45.81 Aligned_cols=125 Identities=18% Similarity=0.253 Sum_probs=77.9
Q ss_pred HHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHh---hHHHHHHHHHHHHHHhhhHHHHH
Q 012561 146 ALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDS---LAREKETRLNMERSHASLSEDLG 222 (461)
Q Consensus 146 ~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s---~~kEkEaR~~~E~~~~~LseeL~ 222 (461)
.++..-+.....+..+..-..+|..+....-+.+..|+. .+.++...-+. |..-.-.-...+.......+.+.
T Consensus 169 ~~~~~~k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~----~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~ 244 (670)
T KOG0239|consen 169 LLDLALKESLKLESDLGDLVTELEHVTNSISELESVLKS----AQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQ 244 (670)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHH
Confidence 333444444444444444444444444443333333333 22222222221 22223333445555566666689
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhh
Q 012561 223 KAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGE 274 (461)
Q Consensus 223 k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~e 274 (461)
.++.++..+++...++.|..+.+++++-..-+++.-++.+|+..++.+....
T Consensus 245 ~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~ 296 (670)
T KOG0239|consen 245 ALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK 296 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888888888999999888877666
No 99
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=93.63 E-value=3.5 Score=38.93 Aligned_cols=67 Identities=19% Similarity=0.370 Sum_probs=32.2
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHHHH-----HHHHhHH-------hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhh
Q 012561 319 VASMRVELQQVRDDRDHQLSQVQALTA-----EVIKHKE-------LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKL 385 (461)
Q Consensus 319 v~~LR~ELqqvRdDRDr~~~QvqsL~a-----E~~~ykE-------l~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKL 385 (461)
+..+|.+|++++.+++....+|+.+.. ....... +..+...|......++++|...+..++.....+
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l 100 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESL 100 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666665555554 3333333 233444444444444444444444444433333
No 100
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=93.48 E-value=8.1 Score=37.69 Aligned_cols=137 Identities=25% Similarity=0.301 Sum_probs=69.0
Q ss_pred HHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHH
Q 012561 231 ANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMR 310 (461)
Q Consensus 231 anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~k 310 (461)
+.-.|..|++=|+||++=| ++||.-+.++.+.-.++ -+-+..||+.+.|+|.-|.-
T Consensus 6 L~~~v~dL~~~n~~L~~en-------~kL~~~ve~~ee~na~L-------~~e~~~L~~q~~s~Qqal~~---------- 61 (193)
T PF14662_consen 6 LLSCVEDLQLNNQKLADEN-------AKLQRSVETAEEGNAQL-------AEEITDLRKQLKSLQQALQK---------- 61 (193)
T ss_pred HHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH----------
Confidence 3445666666666666554 55556666666655554 34466777777776533333
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhHHH-------HHHHHHHHHHhHH-----------hhhhhhHHHHHHhhHHHHHH
Q 012561 311 QKDALVHEVASMRVELQQVRDDRDHQLSQ-------VQALTAEVIKHKE-----------LAVSSEDLEARCASQSNQIR 372 (461)
Q Consensus 311 QK~~L~~Ev~~LR~ELqqvRdDRDr~~~Q-------vqsL~aE~~~ykE-----------l~~k~~~LEetCssQ~eqI~ 372 (461)
-+++-.|++.||..+.-.-+..-..++| -|+|.++|.++.| +.-++..| | ....
T Consensus 62 -aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL---~----~~~~ 133 (193)
T PF14662_consen 62 -AKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKEL---A----TEKA 133 (193)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH---H----HhhH
Confidence 3344445555554444444433333332 3455555555554 22222222 1 1456
Q ss_pred HHHHHHHHHHhhhhhhchhhhhhhhhh
Q 012561 373 SLSDQLAAAEEKLEVSDLSALETKTEF 399 (461)
Q Consensus 373 ~Lq~QLa~A~eKLk~aDlsa~etrte~ 399 (461)
+||.|+-.-++=+-.-|..+++.-...
T Consensus 134 ~Lq~Ql~~~e~l~~~~da~l~e~t~~i 160 (193)
T PF14662_consen 134 TLQRQLCEFESLICQRDAILSERTQQI 160 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 677777554444444455454443333
No 101
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.43 E-value=0.29 Score=45.60 Aligned_cols=144 Identities=25% Similarity=0.310 Sum_probs=25.0
Q ss_pred HhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHH-HHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHH
Q 012561 236 ASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAI-VENLSTLRGQYISLQEQLSTYKASQDEAMRQKDA 314 (461)
Q Consensus 236 ~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~ti-vEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~ 314 (461)
..+=+-|.||.+....|-.-|..|+.+.........-......+. -...+.+-.....++..|+.+.-++.+-..+--.
T Consensus 20 ~~li~ay~~L~d~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~ELael~r~~~el~~~L~~ 99 (194)
T PF08614_consen 20 AELIDAYNRLADRTSLLKAENEQLQPEAESLPSSSSSSPSESGSVSSAQISSLEQKLAKLQEELAELYRSKGELAQQLVE 99 (194)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 355677899999999999999999987665544222222221111 1112222333333444444444444444444444
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH----hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhh
Q 012561 315 LVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE----LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLE 386 (461)
Q Consensus 315 L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE----l~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk 386 (461)
+..++..|+.++ -.....+..|.+++...++ +.....+....-...+..+-+|+.++..+++|+.
T Consensus 100 ~~~~l~~l~~~~-------~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~ 168 (194)
T PF08614_consen 100 LNDELQELEKEL-------SEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLR 168 (194)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444443 3344455566666655554 2223333333333444455555555555555553
No 102
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=93.33 E-value=2.8 Score=37.53 Aligned_cols=48 Identities=29% Similarity=0.374 Sum_probs=27.9
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHH
Q 012561 279 AIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVEL 326 (461)
Q Consensus 279 tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~EL 326 (461)
+.-.+=+.+.-...+|+.-|...|.||++-++|||.|.+=+..|+.+-
T Consensus 6 ~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~ 53 (107)
T PF09304_consen 6 ALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQN 53 (107)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHH
Confidence 333333444555566666778888888888888888666665555543
No 103
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=93.26 E-value=12 Score=38.85 Aligned_cols=186 Identities=17% Similarity=0.246 Sum_probs=122.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHH
Q 012561 216 SLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQ 295 (461)
Q Consensus 216 ~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq 295 (461)
.|.+|+..++.|+-....+- +..-++.-+-|-++---|-.||.++--+.|++. .+++.-.|+.+.|.
T Consensus 3 ~Lq~eia~LrlEidtik~q~---qekE~ky~ediei~Kekn~~Lqk~lKLneE~lt----------kTi~qy~~QLn~L~ 69 (305)
T PF14915_consen 3 MLQDEIAMLRLEIDTIKNQN---QEKEKKYLEDIEILKEKNDDLQKSLKLNEETLT----------KTIFQYNGQLNVLK 69 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH----------HHHHHHhhhHHHHH
Confidence 35677777777776665443 233355667788888888888888877777655 35666778888888
Q ss_pred HHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhh---------
Q 012561 296 EQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCAS--------- 366 (461)
Q Consensus 296 ~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCss--------- 366 (461)
.--+...+-.+-.-.-|+.|-.||+|.|.-|--+--|.|+..+--. ..|++-.++ =+|-|..
T Consensus 70 aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skr--dlelafqr~-------rdEw~~lqdkmn~d~S 140 (305)
T PF14915_consen 70 AENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKR--DLELAFQRA-------RDEWVRLQDKMNSDVS 140 (305)
T ss_pred HHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHH--HHHHHHHHH-------hhHHHHHHHHhcchHH
Confidence 7777777777777777889999999999999888888876443322 223332222 1133333
Q ss_pred -HHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhhhh
Q 012561 367 -QSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEG 423 (461)
Q Consensus 367 -Q~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~kiiEG 423 (461)
.+.....|-+||.-|+.|+.--..-.-.|+.-..+--=.++.+|.-|-.+..++-|=
T Consensus 141 ~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~ 198 (305)
T PF14915_consen 141 NLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEI 198 (305)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334557788888888887766666666666655555555666666666665555443
No 104
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=93.20 E-value=4.6 Score=41.75 Aligned_cols=132 Identities=20% Similarity=0.288 Sum_probs=94.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHH--------------hhhhhhhccHHHHHHHHhhhhhHHHHHH
Q 012561 216 SLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQ--------------HYNTKLQKDIDAAHESIKRGEKEKSAIV 281 (461)
Q Consensus 216 ~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQ--------------QYNSkLQaDl~~~~e~~~r~eKEK~tiv 281 (461)
-|+-||++.+.|...+.--+-.|+.-|.-|..=+..+. ..|++|..-+..+.+..++++-|=..+-
T Consensus 13 IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lr 92 (319)
T PF09789_consen 13 ILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELR 92 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888887777777766655555222222 1568888889999999999999999999
Q ss_pred HhhhhhhhhhhhHHHHHHHhHhhH-------------------HHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Q 012561 282 ENLSTLRGQYISLQEQLSTYKASQ-------------------DEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQA 342 (461)
Q Consensus 282 Enls~LrG~~~SLq~QL~~skaSq-------------------~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~Qvqs 342 (461)
.-+..+.|-.+.|.++++..++-- +.+-+|...|..++.++=.|.+-+--+||-+---|+-
T Consensus 93 qkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~R 172 (319)
T PF09789_consen 93 QKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHR 172 (319)
T ss_pred HHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998766432 2233344455556666666666666677777777777
Q ss_pred HHHHH
Q 012561 343 LTAEV 347 (461)
Q Consensus 343 L~aE~ 347 (461)
|.-|+
T Consensus 173 LN~EL 177 (319)
T PF09789_consen 173 LNHEL 177 (319)
T ss_pred HHHHH
Confidence 76665
No 105
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.16 E-value=23 Score=41.98 Aligned_cols=146 Identities=20% Similarity=0.236 Sum_probs=73.3
Q ss_pred HHhhHhHHHHHH-----------HHHHHHHHHHHh---h-hhhHHHHHHHHHHHHHHHhhHHH-----------------
Q 012561 109 KERCENMMDYIK-----------RLRLCIKWFQEL---E-GDYAFEHERLRNALELSEQKCAE----------------- 156 (461)
Q Consensus 109 Kgr~EqM~dyIK-----------rLr~CIrWfqel---E-~~y~~EqekL~~~Le~~ek~~~e----------------- 156 (461)
++++.-.+.||- -|+.|=+|=.+. | .-|-.|.-...+.|+..+.....
T Consensus 186 ~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d 265 (1200)
T KOG0964|consen 186 REKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQYIDALDKVED 265 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHH
Confidence 456666777773 345555553322 1 13555555555555554443322
Q ss_pred HHHHHHchHHHHHHHHHHHHHHHHHHHHH-------HhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 012561 157 MELALRNKEEELNLIIVELRKSFASLQEK-------LAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQ 229 (461)
Q Consensus 157 ~E~~lk~k~eEL~~~i~ELr~~~~SLqe~-------L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~ 229 (461)
.=..++.++-||+..+.-|+..-..++.. ..+.+-.=-+.-+-.....+.|..+......+-..+..-+.|+.
T Consensus 266 ~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~ 345 (1200)
T KOG0964|consen 266 ESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELS 345 (1200)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 12234444455555555554433333332 22222222233344455566666666666666666666666666
Q ss_pred HHHHHhHhHHHHHHHHHHHHhHHHh
Q 012561 230 SANQRIASINDMYKLLQEYNSSLQH 254 (461)
Q Consensus 230 ~anqqi~slqDmyKRLQEYNTSLQQ 254 (461)
...-+-.++.|--+|+-.--.+|+|
T Consensus 346 ~I~Pky~~l~~ee~~~~~rl~~l~~ 370 (1200)
T KOG0964|consen 346 KIEPKYNSLVDEEKRLKKRLAKLEQ 370 (1200)
T ss_pred HhhhHHHHHHhHHHHHHHHHHHHHH
Confidence 6665556666555555555555554
No 106
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=92.98 E-value=16 Score=39.82 Aligned_cols=69 Identities=20% Similarity=0.262 Sum_probs=31.6
Q ss_pred HhhHHHHHHHHHHHHHHhhhhhhhhh--hHHHHHHHHHHHHHhHH----hhhhhhHHHHHHhhHHHHHHHHHHHH
Q 012561 310 RQKDALVHEVASMRVELQQVRDDRDH--QLSQVQALTAEVIKHKE----LAVSSEDLEARCASQSNQIRSLSDQL 378 (461)
Q Consensus 310 kQK~~L~~Ev~~LR~ELqqvRdDRDr--~~~QvqsL~aE~~~ykE----l~~k~~~LEetCssQ~eqI~~Lq~QL 378 (461)
++...+.+++..+..||..+..-=.. --.+++.+..++..+.. +..+...++..+..-.++|..++.++
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666655541100 01244555555544444 33333344444443344444444444
No 107
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=92.97 E-value=8.4 Score=36.44 Aligned_cols=82 Identities=15% Similarity=0.253 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHH
Q 012561 219 EDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQL 298 (461)
Q Consensus 219 eeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL 298 (461)
.++...+.....+.+.|..+..-....++.-..+++.+.....++........+..+....+...+...+.....++.++
T Consensus 63 ~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l 142 (302)
T PF10186_consen 63 REIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQL 142 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444455555555566666666666664444444444555555555555555444444444
Q ss_pred HH
Q 012561 299 ST 300 (461)
Q Consensus 299 ~~ 300 (461)
..
T Consensus 143 ~~ 144 (302)
T PF10186_consen 143 AR 144 (302)
T ss_pred HH
Confidence 43
No 108
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=92.89 E-value=12 Score=38.11 Aligned_cols=54 Identities=7% Similarity=0.041 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhh---chhhhhhhhhhHHhHHHHHHHHHhHHHHhh
Q 012561 365 ASQSNQIRSLSDQLAAAEEKLEVS---DLSALETKTEFEGQKKLINELRNHLEDAEY 418 (461)
Q Consensus 365 ssQ~eqI~~Lq~QLa~A~eKLk~a---Dlsa~etrte~E~Qk~~i~eLq~RLadaE~ 418 (461)
.....++..|+.+|+..+..+.-. ......-..+++-.+..+..|-.|+.+++.
T Consensus 314 ~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~L~r~~~~~~~~y~~ll~r~~e~~l 370 (444)
T TIGR03017 314 RILKQREAELREALENQKAKVLELNRQRDEMSVLQRDVENAQRAYDAAMQRYTQTRI 370 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555655555433332211 111233345778888889999999988753
No 109
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=92.82 E-value=17 Score=39.66 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=12.9
Q ss_pred hccHHHHHHHHhhhhhHHHHHHHhhh
Q 012561 260 QKDIDAAHESIKRGEKEKSAIVENLS 285 (461)
Q Consensus 260 QaDl~~~~e~~~r~eKEK~tivEnls 285 (461)
+..+......+++++.|-..|=..|.
T Consensus 390 ~~~~~~~~~~~~~~e~el~~l~~~l~ 415 (650)
T TIGR03185 390 QDAKSQLLKELRELEEELAEVDKKIS 415 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444455555555555555544443
No 110
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.68 E-value=27 Score=41.51 Aligned_cols=98 Identities=26% Similarity=0.296 Sum_probs=49.6
Q ss_pred hhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhh-------hhhhhhhhHHHHHHHHHHHHHhHH----hh--
Q 012561 288 RGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQ-------VRDDRDHQLSQVQALTAEVIKHKE----LA-- 354 (461)
Q Consensus 288 rG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqq-------vRdDRDr~~~QvqsL~aE~~~ykE----l~-- 354 (461)
-++-.+|++||..+|.+..++=...+.+...+..+|.||.. ...+++.-...+..+..++.+.+- |-
T Consensus 391 ~~~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~ 470 (1174)
T KOG0933|consen 391 EDEEKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYK 470 (1174)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34455666666666666666655555555555555544443 233444444444444444444443 11
Q ss_pred -hhhhHHHHHHhhHHHHHHHHHHHHHHHHhhh
Q 012561 355 -VSSEDLEARCASQSNQIRSLSDQLAAAEEKL 385 (461)
Q Consensus 355 -~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKL 385 (461)
..-.+|++.-..-.+.|.-|-+.+.+-..++
T Consensus 471 ~~~~e~l~q~~~~l~~~~~~lk~~~~~l~a~~ 502 (1174)
T KOG0933|consen 471 IGQEEALKQRRAKLHEDIGRLKDELDRLLARL 502 (1174)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1222444444444456666666666665555
No 111
>PLN02939 transferase, transferring glycosyl groups
Probab=92.67 E-value=26 Score=41.28 Aligned_cols=230 Identities=23% Similarity=0.269 Sum_probs=114.4
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHH-HH
Q 012561 136 YAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMER-SH 214 (461)
Q Consensus 136 y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~-~~ 214 (461)
-+.|+|.|++.+.-.+-+.+|.++.+|-.-++- +.. .-|++. ++.++.|--.|.+.+. .-
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 221 (977)
T PLN02939 161 ILTEKEALQGKINILEMRLSETDARIKLAAQEK--IHV------EILEEQ-----------LEKLRNELLIRGATEGLCV 221 (977)
T ss_pred HHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhcc--ccc------hhhHHH-----------HHHHhhhhhcccccccccc
Confidence 466777777777777777777766665443311 111 111221 1223333333333332 23
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhH
Q 012561 215 ASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISL 294 (461)
Q Consensus 215 ~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SL 294 (461)
..|+.||+-++.|-..+.+-|..+-.. | .+.....+.+-.++||.+-+-.++..|--.+..-
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (977)
T PLN02939 222 HSLSKELDVLKEENMLLKDDIQFLKAE-----------------L-IEVAETEERVFKLEKERSLLDASLRELESKFIVA 283 (977)
T ss_pred ccHHHHHHHHHHHhHHHHHHHHHHHHH-----------------H-HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346677776666655555444433211 1 1112234456678888888877777776655444
Q ss_pred HHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhH---HHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHH
Q 012561 295 QEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQL---SQVQALTAEVIKHKELAVSSEDLEARCASQSNQI 371 (461)
Q Consensus 295 q~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~---~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI 371 (461)
|.-..-...-|.| .+-.-|+.|..=|......=|+.+ .|-|.|..-|.+.++.-...+.-.- -.+-|
T Consensus 284 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 353 (977)
T PLN02939 284 QEDVSKLSPLQYD------CWWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKF----SSYKV 353 (977)
T ss_pred hhhhhhccchhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhHhhh----hHHHH
Confidence 3333333333333 244444444443333322222211 1222222223333221111111111 12367
Q ss_pred HHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHH
Q 012561 372 RSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLED 415 (461)
Q Consensus 372 ~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLad 415 (461)
..||+++...++.|+.+|- |..+..+-....|.++|.-|..
T Consensus 354 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 394 (977)
T PLN02939 354 ELLQQKLKLLEERLQASDH---EIHSYIQLYQESIKEFQDTLSK 394 (977)
T ss_pred HHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999988774 5556666666777777766654
No 112
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=92.50 E-value=18 Score=39.18 Aligned_cols=172 Identities=20% Similarity=0.287 Sum_probs=112.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH-HHhHHHhhhhhhhccHHHHHHHHhhh
Q 012561 195 AALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQE-YNSSLQHYNTKLQKDIDAAHESIKRG 273 (461)
Q Consensus 195 ~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQE-YNTSLQQYNSkLQaDl~~~~e~~~r~ 273 (461)
..-+.+++|.+||-.+++....+...|..+...-..+...+.-|+.-|- |.+ .--..+ ...+.++.+
T Consensus 289 ~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~-L~~~e~~~~~-----------~l~~~l~~l 356 (560)
T PF06160_consen 289 QLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYT-LNHNELEIVR-----------ELEKQLKEL 356 (560)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCchHHHHHH-----------HHHHHHHHH
Confidence 4557889999999999999999999999988887777777766666552 221 111111 223455666
Q ss_pred hhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHh
Q 012561 274 EKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKEL 353 (461)
Q Consensus 274 eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl 353 (461)
++.-..+...+..=..-|+.++..+.......++.-++...+...|..||.+-+.+|+.=++....+....--+.+.. |
T Consensus 357 ~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~n-L 435 (560)
T PF06160_consen 357 EKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSN-L 435 (560)
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-C
Confidence 677777777777777778888888877777777777777888888888888888887754444444444333332211 1
Q ss_pred hhhhhHHHHHHhhHHHHHHHHHHHHH
Q 012561 354 AVSSEDLEARCASQSNQIRSLSDQLA 379 (461)
Q Consensus 354 ~~k~~~LEetCssQ~eqI~~Lq~QLa 379 (461)
=--......--..-.+.|..|..+|.
T Consensus 436 PGlp~~y~~~~~~~~~~i~~l~~~L~ 461 (560)
T PF06160_consen 436 PGLPEDYLDYFFDVSDEIEELSDELN 461 (560)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 11122333444444566777776665
No 113
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=92.40 E-value=11 Score=42.71 Aligned_cols=107 Identities=21% Similarity=0.270 Sum_probs=77.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHH
Q 012561 143 LRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLG 222 (461)
Q Consensus 143 L~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~ 222 (461)
|-.+.++.-.|..|+|.-+.-+-..|+++-+-|+..+-|- ..-|+.||+.|.....=|=-+.++|+.|..--+-+.
T Consensus 130 LteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsr----tsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R 205 (861)
T KOG1899|consen 130 LTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSR----TSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLR 205 (861)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhh----hhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHH
Confidence 3444555566677777777777777777777777666554 446888999998888778888899999998888888
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhcc
Q 012561 223 KAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKD 262 (461)
Q Consensus 223 k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaD 262 (461)
..+..++..| |++.=.=.+.||| |-.||.+-
T Consensus 206 ~se~l~qevn-~~kv~e~~~erlq--------ye~klkst 236 (861)
T KOG1899|consen 206 LSENLMQEVN-QSKVGEVVQERLQ--------YETKLKST 236 (861)
T ss_pred hHHHHHHHHH-HHHHHHHHHHHHH--------HHhhcccc
Confidence 8999998888 5544444455654 66666653
No 114
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=92.33 E-value=11 Score=36.16 Aligned_cols=117 Identities=20% Similarity=0.304 Sum_probs=69.1
Q ss_pred hHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhh-hhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHH
Q 012561 293 SLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRD-DRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQI 371 (461)
Q Consensus 293 SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRd-DRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI 371 (461)
.|+.+|--++..-.+.-+...+.-.|+..++.+|+.... .-|+.+..... |.-+...++..-....+.|
T Consensus 72 ~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eRee----------L~~kL~~~~~~l~~~~~ki 141 (194)
T PF15619_consen 72 VLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREE----------LQRKLSQLEQKLQEKEKKI 141 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHH----------HHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555556666677777777776543 11223332222 3334444444555556678
Q ss_pred HHHHHHHHHHHhhhh----hhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhh
Q 012561 372 RSLSDQLAAAEEKLE----VSDLSALETKTEFEGQKKLINELRNHLEDAEYK 419 (461)
Q Consensus 372 ~~Lq~QLa~A~eKLk----~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~k 419 (461)
..|+.+|..++.-+. .--....+++++...-..-|..|..+|.+.|.+
T Consensus 142 ~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKer~ 193 (194)
T PF15619_consen 142 QELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKERE 193 (194)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 888887776654432 333445677777777788888888888887754
No 115
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=91.91 E-value=18 Score=37.64 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=14.3
Q ss_pred HHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH
Q 012561 322 MRVELQQVRDDRDHQLSQVQALTAEVIKHKE 352 (461)
Q Consensus 322 LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE 352 (461)
|+..+..++-+.+-.-+++..|..++..+++
T Consensus 315 l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~ 345 (498)
T TIGR03007 315 LQIELAEAEAEIASLEARVAELTARIERLES 345 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444555555555544
No 116
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=91.49 E-value=33 Score=39.94 Aligned_cols=23 Identities=0% Similarity=-0.077 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhH
Q 012561 115 MMDYIKRLRLCIKWFQELEGDYA 137 (461)
Q Consensus 115 M~dyIKrLr~CIrWfqelE~~y~ 137 (461)
|++-|=.+-.+-+|-..+=+-+-
T Consensus 172 il~~l~g~~~y~~~~~~l~er~k 194 (1047)
T PRK10246 172 LLEELTGTEIYGQISAMVFEQHK 194 (1047)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHH
Confidence 44444444555555555544443
No 117
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=91.35 E-value=31 Score=39.37 Aligned_cols=118 Identities=27% Similarity=0.382 Sum_probs=75.1
Q ss_pred hhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHH-------HHH--------HhhHHHHHHHHHHHHHHhhhhhhhhhhHH
Q 012561 274 EKEKSAIVENLSTLRGQYISLQEQLSTYKASQD-------EAM--------RQKDALVHEVASMRVELQQVRDDRDHQLS 338 (461)
Q Consensus 274 eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~-------Ea~--------kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~ 338 (461)
.+.|...+|-+--||+-...=-+|+++.|.=.. -|+ .+|-....-+.-||.||...++|.....+
T Consensus 582 d~d~e~l~eqilKLKSLLSTKREQIaTLRTVLKANKqTAEvALanLKsKYE~EK~~v~etm~kLRnELK~LKEDAATFsS 661 (717)
T PF09730_consen 582 DKDKEELQEQILKLKSLLSTKREQIATLRTVLKANKQTAEVALANLKSKYENEKAMVSETMMKLRNELKALKEDAATFSS 661 (717)
T ss_pred cccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777777777777664322 111 13444555678899999999998877665
Q ss_pred HHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHH---HHHHhHHH
Q 012561 339 QVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLIN---ELRNHLED 415 (461)
Q Consensus 339 QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~---eLq~RLad 415 (461)
-=.=+.+- |--=--|+..||.||++|++ |.+|==.--++-|. .|.-||+|
T Consensus 662 lRamFa~R-----------------CdEYvtQldemqrqL~aAEd----------EKKTLNsLLRmAIQQKLaLTQRLEd 714 (717)
T PF09730_consen 662 LRAMFAAR-----------------CDEYVTQLDEMQRQLAAAED----------EKKTLNSLLRMAIQQKLALTQRLED 714 (717)
T ss_pred HHHHHHHH-----------------HHHHHHHHHHHHHHHHHhHH----------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 54444443 33334499999999999987 33332222122221 46778888
Q ss_pred Hhh
Q 012561 416 AEY 418 (461)
Q Consensus 416 aE~ 418 (461)
-||
T Consensus 715 lE~ 717 (717)
T PF09730_consen 715 LEF 717 (717)
T ss_pred ccC
Confidence 664
No 118
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=91.29 E-value=5.4 Score=36.35 Aligned_cols=92 Identities=15% Similarity=0.309 Sum_probs=52.6
Q ss_pred hhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhh
Q 012561 257 TKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQ 336 (461)
Q Consensus 257 SkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~ 336 (461)
..++.++......+..+++|=..+-+-+..+.++...+++.+.....-....-..-+.+...+..++.|+...++...+.
T Consensus 77 ~~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~ 156 (191)
T PF04156_consen 77 PRLQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDS 156 (191)
T ss_pred hhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777777777777777777777777766666666553333333334444555555555555555333333
Q ss_pred HHHHHHHHHHHH
Q 012561 337 LSQVQALTAEVI 348 (461)
Q Consensus 337 ~~QvqsL~aE~~ 348 (461)
...++.+..++.
T Consensus 157 ~~~~~~~~~~~~ 168 (191)
T PF04156_consen 157 REEVQELRSQLE 168 (191)
T ss_pred HHHHHHHHHHHH
Confidence 334444443333
No 119
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=91.17 E-value=7.9 Score=44.30 Aligned_cols=183 Identities=21% Similarity=0.256 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHH--HhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHH
Q 012561 137 AFEHERLRNALELS--EQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSH 214 (461)
Q Consensus 137 ~~EqekL~~~Le~~--ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~ 214 (461)
.+|+.=+..+-+.. .-.-.++|.+|.+|-.++-. ++....||+++|.--|-.=.-+++ -++...+|+
T Consensus 74 t~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq----~eekn~slqerLelaE~~l~qs~r-----ae~lpevea-- 142 (916)
T KOG0249|consen 74 TLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQ----NEEKNRSLQERLELAEPKLQQSLR-----AETLPEVEA-- 142 (916)
T ss_pred hHHHHHHhccCCCCCcccchHHHHHHHhCcchhhch----hHHhhhhhhHHHHHhhHhhHhHHh-----hhhhhhhHH--
Confidence 34444444443332 23345666666666655543 444556666666543322111211 122222222
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhH
Q 012561 215 ASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISL 294 (461)
Q Consensus 215 ~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SL 294 (461)
.|.-.+.-+..-....-..+.-+.-+|--+|+-|++||--|-++--..+-+. + + +.-.
T Consensus 143 -el~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqreemneeh~~----r----------------l-sdtv 200 (916)
T KOG0249|consen 143 -ELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREKMNEEHNK----R----------------L-SDTV 200 (916)
T ss_pred -HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc----c----------------c-cccc
Confidence 2222222222222333345677888899999999999988876643332221 1 1 1111
Q ss_pred HHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH
Q 012561 295 QEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE 352 (461)
Q Consensus 295 q~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE 352 (461)
-+-|+.+.--...|+..|+.|..|+.+++.-|.+.+-|+|++......|.+++...++
T Consensus 201 dErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 201 DERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR 258 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 1455566566666888999999999999999999999999999999999999887663
No 120
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=90.82 E-value=22 Score=40.71 Aligned_cols=180 Identities=18% Similarity=0.218 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHH
Q 012561 218 SEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQ 297 (461)
Q Consensus 218 seeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~Q 297 (461)
++-.-.++.++..+.+-..--.|+-+-.+|..+.|+-+-+. ...+ ..+.-+++.|=.++....++...+...
T Consensus 512 sEfv~~LekeVh~C~DLLsgkadLE~fieE~s~tLdwIls~-~~SL-------qDv~s~~sEIK~~f~~~ss~e~E~~~~ 583 (769)
T PF05911_consen 512 SEFVLVLEKEVHVCQDLLSGKADLERFIEEFSLTLDWILSN-CFSL-------QDVSSMRSEIKKNFDGDSSSEAEINSE 583 (769)
T ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHc-cchH-------HHHHHHHHHHHHhhhhcccccccccch
Confidence 44455556677777777777777888899999988877553 1111 115567777777777777766555444
Q ss_pred HHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHH
Q 012561 298 LSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQ 377 (461)
Q Consensus 298 L~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~Q 377 (461)
...-.....+-..+-+.+..|-..|-++|..+-| +++++.. .++|+..+..+|...+.+.++-=..++.|
T Consensus 584 dea~~~~~~el~eelE~le~eK~~Le~~L~~~~d-------~lE~~~~---qL~E~E~~L~eLq~eL~~~keS~s~~E~q 653 (769)
T PF05911_consen 584 DEADTSEKKELEEELEKLESEKEELEMELASCQD-------QLESLKN---QLKESEQKLEELQSELESAKESNSLAETQ 653 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4222222222222333333333333333333322 2222222 22334444444444444444444555555
Q ss_pred HHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHH
Q 012561 378 LAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLED 415 (461)
Q Consensus 378 La~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLad 415 (461)
|.+.+++.+..+..+-.+.+|...-...|..|+.-|.+
T Consensus 654 l~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~ 691 (769)
T PF05911_consen 654 LKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEK 691 (769)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555544
No 121
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=90.64 E-value=41 Score=39.54 Aligned_cols=204 Identities=15% Similarity=0.190 Sum_probs=106.5
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHh
Q 012561 192 DKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIK 271 (461)
Q Consensus 192 eKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~ 271 (461)
.|.---.+.++=-+|+..++..--.|+-+..-++.++..+.-++.++.|.-.-|-.--.-+=--=.++|--+.++.+.+.
T Consensus 303 lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elq 382 (1265)
T KOG0976|consen 303 LKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQ 382 (1265)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34444455566667777777777778888888888888888888887775443332111111111122223333444444
Q ss_pred hhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhh---hhhhhhhHHHHHHHHHHHH
Q 012561 272 RGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQV---RDDRDHQLSQVQALTAEVI 348 (461)
Q Consensus 272 r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqv---RdDRDr~~~QvqsL~aE~~ 348 (461)
++--+-+..-|.|..|+.|.-++. -.-+-+++..||+..--.-|.+. +-|=|.|++-.++|..--.
T Consensus 383 sL~~l~aerqeQidelKn~if~~e-----------~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~ae 451 (1265)
T KOG0976|consen 383 SLLELQAERQEQIDELKNHIFRLE-----------QGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAE 451 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhh-----------hccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhh
Confidence 444444444444444444433332 12233333333333322222222 3345677777777654322
Q ss_pred HhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHH
Q 012561 349 KHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDA 416 (461)
Q Consensus 349 ~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLada 416 (461)
--.+ .++ +.|.---..|+.|+.+|+. -+-.....-+-..+-+.|++.|+.+.+-+.+.
T Consensus 452 gsrr-----raI-eQcnemv~rir~l~~sle~----qrKVeqe~emlKaen~rqakkiefmkEeiQet 509 (1265)
T KOG0976|consen 452 GSRR-----RAI-EQCNEMVDRIRALMDSLEK----QRKVEQEYEMLKAENERQAKKIEFMKEEIQET 509 (1265)
T ss_pred hhHh-----hHH-HHHHHHHHHHHHHhhChhh----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 011 3455555566666666642 22335566666778888999988887766553
No 122
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=90.57 E-value=11 Score=38.57 Aligned_cols=121 Identities=17% Similarity=0.275 Sum_probs=75.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHH----HHHHhhhhhHHHHHHHhhh
Q 012561 210 MERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAA----HESIKRGEKEKSAIVENLS 285 (461)
Q Consensus 210 ~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~----~e~~~r~eKEK~tivEnls 285 (461)
.+-...+|.+.++-++.+...+++++.-+++++-.|.+|-..|+.==..|+.-.+.. .+.++++..+=+....-+.
T Consensus 142 legLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~ 221 (312)
T smart00787 142 LEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIM 221 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 456677888888889999999999999999998888888777665444444322221 1122222211112222333
Q ss_pred hhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhh
Q 012561 286 TLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVR 330 (461)
Q Consensus 286 ~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvR 330 (461)
..+.....++.||....+.-++...+|..+..++..++.-+.+.|
T Consensus 222 ~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r 266 (312)
T smart00787 222 IKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCR 266 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445556666677777777777777777777777766665554444
No 123
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=90.21 E-value=29 Score=37.19 Aligned_cols=15 Identities=40% Similarity=0.344 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHHHHH
Q 012561 136 YAFEHERLRNALELS 150 (461)
Q Consensus 136 y~~EqekL~~~Le~~ 150 (461)
+-.|...++..|+..
T Consensus 121 ~~~El~~l~~~l~~l 135 (511)
T PF09787_consen 121 LDQELRRLRRQLEEL 135 (511)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345566666666665
No 124
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=90.12 E-value=39 Score=38.52 Aligned_cols=246 Identities=20% Similarity=0.231 Sum_probs=138.5
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q 012561 113 ENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESD 192 (461)
Q Consensus 113 EqM~dyIKrLr~CIrWfqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keese 192 (461)
+-|+.|+.+|+.=+--+++.=-.++...-.|...+...+..-.+++ ..+|.+.+.++..++.-..|. +--++
T Consensus 51 ~~L~~e~e~Lq~~~~~~~~~~~~~~~~~~el~~k~s~~~~~~~e~~----~~le~~~~d~eki~~~~~~l~----~~la~ 122 (698)
T KOG0978|consen 51 DELAEENEKLQNLADHLQEKHATLSEQISELLDKISTAETEVDELE----QQLEDLQADLEKIRRRSNKLN----KHLAE 122 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH----HhHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 3455666666655555555545555555555555555555554443 344566666666655444333 33333
Q ss_pred HHHHHHh---------------------hHHHHHH-HHH-------HHHH---HhhhHHHHHHHHHHHHHHHHHhHhHHH
Q 012561 193 KLAALDS---------------------LAREKET-RLN-------MERS---HASLSEDLGKAQEELQSANQRIASIND 240 (461)
Q Consensus 193 Kl~a~~s---------------------~~kEkEa-R~~-------~E~~---~~~LseeL~k~q~E~~~anqqi~slqD 240 (461)
.....-+ +.++.+. +.. .+++ .+.+.-.+.+.+.++..++-+..+..=
T Consensus 123 ~~~~~~t~~~~~~~~~~~~t~~~t~~~~l~~~iee~~~~~~~~~~ele~lq~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 202 (698)
T KOG0978|consen 123 ALEHLNTYGNGNGSLSGTITVNSTELEELRDEIEELRELASTRMEELEKLQLYSDEILRQLDRFRVELRSLKEKVRSETF 202 (698)
T ss_pred HhccCCCCCCcccccCcccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3333222 2333333 221 2222 244556778888888888999999999
Q ss_pred HHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHH
Q 012561 241 MYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVA 320 (461)
Q Consensus 241 myKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~ 320 (461)
.|..+| ||.+||-|| .-+|=..++.....+++-.+..++...+|+-.......+.+. .++-...|+--..-..|..
T Consensus 203 e~~~~~-~NE~l~~~~--~~~~e~~~~~~~~~lee~~~~~~~e~~~l~~~~e~~~~~~~~-~~~in~e~~~L~Ssl~e~~ 278 (698)
T KOG0978|consen 203 ELRCLQ-YNEELQRKT--MESDEAINSKKVIKLEEKLAQCVKEYEMLRKEFENNKSQNDL-FSSINREMRHLISSLQEHE 278 (698)
T ss_pred HHHHHH-hhhhccccc--chhhhhhccchHHHHHHHHHHHHHHHHHHHHhHHHhHHhhhh-hhhHHHHHHHHHHHHHHHH
Confidence 999999 999999999 112222333345667777777788878887776666667776 6777777777666555655
Q ss_pred HHHHHHhhhhhhhh------hhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHH
Q 012561 321 SMRVELQQVRDDRD------HQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLS 375 (461)
Q Consensus 321 ~LR~ELqqvRdDRD------r~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq 375 (461)
.+..+ +.|.-+| -.-.+++++..-+.. -......|...|.....++..++
T Consensus 279 ~~l~~--~~~~~k~t~~~~~~lr~~~~s~~~~~~~---~~~~~e~l~~~~~~~~~~~~~~~ 334 (698)
T KOG0978|consen 279 KLLKE--YERELKDTESDNLKLRKQHSSAADSLES---KSRDLESLLDKIQDLISQEAELS 334 (698)
T ss_pred HHHHH--HHHHHhcccchHHHHHHHHHHHHhhccc---hhHHHHHHHHHHHHHHHHHHHHH
Confidence 55554 2222222 122233332222211 12233445566666666666665
No 125
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=90.08 E-value=24 Score=35.94 Aligned_cols=62 Identities=19% Similarity=0.228 Sum_probs=41.1
Q ss_pred hhhhhhHHHHHHhh----HHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHH
Q 012561 353 LAVSSEDLEARCAS----QSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLE 414 (461)
Q Consensus 353 l~~k~~~LEetCss----Q~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLa 414 (461)
-..|||++=.++-. -.+.|+.|+..-..-+.|-.-+|...++...+.......+..++..+.
T Consensus 231 tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~ 296 (309)
T PF09728_consen 231 TLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIE 296 (309)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566655554433 345677788888888888888888888777777666666666555443
No 126
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=90.05 E-value=15 Score=33.63 Aligned_cols=155 Identities=17% Similarity=0.234 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHH--HHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHH
Q 012561 222 GKAQEELQSANQRIASINDMYKLLQ--EYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLS 299 (461)
Q Consensus 222 ~k~q~E~~~anqqi~slqDmyKRLQ--EYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~ 299 (461)
-.+++.+..+..++...+++-.-|. .| -+||==|..|..-++.=...+.++..-=...|-.|+.+|.....+...+.
T Consensus 16 ~~lk~~l~k~~~ql~~ke~lge~L~~iDF-eqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~ 94 (177)
T PF13870_consen 16 ITLKHQLAKLEEQLRQKEELGEGLHLIDF-EQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELE 94 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555544433221 22 13444455555556666667777776666777888888886666555555
Q ss_pred HhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH--hhhhhhHHHHHHhhHHHHHHHHHHH
Q 012561 300 TYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE--LAVSSEDLEARCASQSNQIRSLSDQ 377 (461)
Q Consensus 300 ~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE--l~~k~~~LEetCssQ~eqI~~Lq~Q 377 (461)
..+.. -.+...++..+|.+|.++.-+||..-.+...|....+-|.- ||..-....+....-+..|+.|+..
T Consensus 95 ~l~~~-------l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk 167 (177)
T PF13870_consen 95 RLKQE-------LKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELERK 167 (177)
T ss_pred HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 34455677888999999999999888888887766655432 3333322223333334445555555
Q ss_pred HHHHHhh
Q 012561 378 LAAAEEK 384 (461)
Q Consensus 378 La~A~eK 384 (461)
...++.+
T Consensus 168 ~~~l~~~ 174 (177)
T PF13870_consen 168 VEILEMR 174 (177)
T ss_pred HHHHHHh
Confidence 5555444
No 127
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=89.95 E-value=49 Score=39.41 Aligned_cols=15 Identities=27% Similarity=0.612 Sum_probs=9.2
Q ss_pred Cccccc-HHHHHHHHh
Q 012561 83 GTIEFT-REDVEALLS 97 (461)
Q Consensus 83 ~~ieFt-redVeALLn 97 (461)
|.+.=| ++||+++|.
T Consensus 154 grvVStKk~dl~~vv~ 169 (1074)
T KOG0250|consen 154 GRVVSTKKEDLDTVVD 169 (1074)
T ss_pred CccccccHHHHHHHHH
Confidence 444334 788888763
No 128
>PRK04863 mukB cell division protein MukB; Provisional
Probab=89.85 E-value=57 Score=40.00 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=12.0
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHH
Q 012561 357 SEDLEARCASQSNQIRSLSDQLAAA 381 (461)
Q Consensus 357 ~~~LEetCssQ~eqI~~Lq~QLa~A 381 (461)
...||..-.-|..++..|.++++.+
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (1486)
T PRK04863 553 EDELEQLQEELEARLESLSESVSEA 577 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344544444555555555444443
No 129
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=89.70 E-value=47 Score=38.76 Aligned_cols=70 Identities=16% Similarity=0.295 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH-------hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhh
Q 012561 318 EVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE-------LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEV 387 (461)
Q Consensus 318 Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE-------l~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~ 387 (461)
++..||.+++...+.+-...+.+..+...+...-. .......|++.+......+..++.++......|..
T Consensus 778 ~~~~l~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 854 (1047)
T PRK10246 778 TLTQLEQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVTVEQIQQELAQLAQQLRENTTRQGEIRQQLKQ 854 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666655554444444444333333211 01234456666666666777777777666666554
No 130
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=89.59 E-value=20 Score=34.38 Aligned_cols=140 Identities=21% Similarity=0.232 Sum_probs=88.9
Q ss_pred hhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhh--hhhhHHHHHHHHHHHHHh
Q 012561 273 GEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDD--RDHQLSQVQALTAEVIKH 350 (461)
Q Consensus 273 ~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdD--RDr~~~QvqsL~aE~~~y 350 (461)
++..=....-.|..+.......+.+|.....+-+.+-.+-.++...+..++..|+....+ -.=.-++...|.+|....
T Consensus 83 Leq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l 162 (240)
T PF12795_consen 83 LEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAAL 162 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHH
Confidence 333333333344444444444555555555555555555555555555555566554222 333456677788888887
Q ss_pred HHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHH-----hHHHHhhhhhhhHH
Q 012561 351 KELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRN-----HLEDAEYKLIEGEK 425 (461)
Q Consensus 351 kEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~-----RLadaE~kiiEGEk 425 (461)
+- +|.+|+..|..+.....+.-+-.......+......+..||+ |+.++|..+=+.+.
T Consensus 163 ~~-----------------~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R~~eae~~~~~a~~ 225 (240)
T PF12795_consen 163 EA-----------------QIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKRRQEAEQAVEEAEQ 225 (240)
T ss_pred HH-----------------HHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77 777777777777777777766666677777777777777765 77889999999888
Q ss_pred hHHh
Q 012561 426 LRKR 429 (461)
Q Consensus 426 LRKK 429 (461)
+...
T Consensus 226 ~~~~ 229 (240)
T PF12795_consen 226 LQEE 229 (240)
T ss_pred HHHH
Confidence 8776
No 131
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=89.54 E-value=46 Score=38.47 Aligned_cols=146 Identities=18% Similarity=0.227 Sum_probs=81.0
Q ss_pred HHHHhhhh---hHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Q 012561 267 HESIKRGE---KEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQAL 343 (461)
Q Consensus 267 ~e~~~r~e---KEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL 343 (461)
...|+++- ||-.+|++-.+. ..+-|+.-+.-.|.+.+.....-.-+..=|..+-+|+.++.|+=-+.-+-+..|
T Consensus 473 s~iIkKLRAk~ke~etl~~K~ge---~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~l 549 (961)
T KOG4673|consen 473 SAIIKKLRAKIKEAETLEEKKGE---LITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAAL 549 (961)
T ss_pred HHHHHHHHHHhhhhhHHHHHhhh---HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34555552 333444444322 556666666666666665555555555666777777777777655554444444
Q ss_pred HHHHHH----hHHhh---hhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHH
Q 012561 344 TAEVIK----HKELA---VSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDA 416 (461)
Q Consensus 344 ~aE~~~----ykEl~---~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLada 416 (461)
.+-+.. +.++. -|-|.|+- -.-+++-.+|=+|+.--..+|..+.-++--.--.| ..-|.+||.||..|
T Consensus 550 e~~~~a~qat~d~a~~Dlqk~nrlkQ--dear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~---R~Ei~~LqrRlqaa 624 (961)
T KOG4673|consen 550 EAQALAEQATNDEARSDLQKENRLKQ--DEARERESMLVQQVEDLRQTLSKKEQQAARREDMF---RGEIEDLQRRLQAA 624 (961)
T ss_pred HHHHHHHHHhhhhhhhhHHHHhhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 443322 22211 14455541 12344555666666666666666655543221111 35799999999999
Q ss_pred hhhh
Q 012561 417 EYKL 420 (461)
Q Consensus 417 E~ki 420 (461)
|..-
T Consensus 625 E~R~ 628 (961)
T KOG4673|consen 625 ERRC 628 (961)
T ss_pred HHHH
Confidence 9753
No 132
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=89.35 E-value=26 Score=35.36 Aligned_cols=89 Identities=21% Similarity=0.222 Sum_probs=50.0
Q ss_pred HHHHHHHHhhhhhccCCCChHHhhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHH
Q 012561 89 REDVEALLSEKMRYKNKFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEEL 168 (461)
Q Consensus 89 redVeALLnEKmk~k~KfdyKgr~EqM~dyIKrLr~CIrWfqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL 168 (461)
.+|+-++++..++ ++- ---||.+=-.||.-+ ..=.+-|...|+..-.....=...|...++.+
T Consensus 113 ~~d~r~~m~~q~~------------~vK-~~aRl~aK~~WYeWR----~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l 175 (325)
T PF08317_consen 113 DPDMRLLMDNQFQ------------LVK-TYARLEAKKMWYEWR----MQLLEGLKEGLEENLELLQEDYAKLDKQLEQL 175 (325)
T ss_pred CHHHHHHHHHHHH------------HHH-HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667666655 111 223555555677544 11123334444443333333445566677777
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhHH
Q 012561 169 NLIIVELRKSFASLQEKLAKEESDKL 194 (461)
Q Consensus 169 ~~~i~ELr~~~~SLqe~L~keeseKl 194 (461)
+.+...|+...+.|..++...++-..
T Consensus 176 ~~~~~~l~~~~~~L~~e~~~Lk~~~~ 201 (325)
T PF08317_consen 176 DELLPKLRERKAELEEELENLKQLVE 201 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77888888888888777776655443
No 133
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=89.29 E-value=6.5 Score=38.47 Aligned_cols=120 Identities=27% Similarity=0.404 Sum_probs=66.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHH
Q 012561 216 SLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQ 295 (461)
Q Consensus 216 ~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq 295 (461)
+|...|..++..+.....++..++|.+. .=+.++..-...+.+...|...+-+.++-|......|.
T Consensus 35 ~Lr~ql~e~~~~l~~~~~~~~~l~~~~~--------------~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr 100 (202)
T PF06818_consen 35 SLRAQLRELRAELRNKESQIQELQDSLR--------------TKQLELEVCENELQRKKNEAELLREKLGQLEAELAELR 100 (202)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHH--------------HhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHH
Confidence 3444455555555555555555554331 12233444444444444444444455555555555555
Q ss_pred HHHHHhH---------hhHHHHHHh-------hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH
Q 012561 296 EQLSTYK---------ASQDEAMRQ-------KDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE 352 (461)
Q Consensus 296 ~QL~~sk---------aSq~Ea~kQ-------K~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE 352 (461)
+.++... .--++|--+ -..|..+|++||+||..-|..+|++ ...|..|=..+.|
T Consensus 101 ~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q---~~~Fe~ER~~W~e 170 (202)
T PF06818_consen 101 EELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQ---RSSFEQERRTWQE 170 (202)
T ss_pred HHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHH
Confidence 5555541 112333322 4459999999999999988888765 4566666666655
No 134
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=89.18 E-value=40 Score=37.24 Aligned_cols=31 Identities=19% Similarity=0.054 Sum_probs=16.3
Q ss_pred HHHchHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 012561 160 ALRNKEEELNLIIVELRKSFASLQEKLAKEE 190 (461)
Q Consensus 160 ~lk~k~eEL~~~i~ELr~~~~SLqe~L~kee 190 (461)
.+..+.+.....+.-|..++..+..+|...|
T Consensus 184 ~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE 214 (754)
T TIGR01005 184 QGAAKSESNTAAADFLAPEIADLSKQSRDAE 214 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555443
No 135
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=89.15 E-value=24 Score=34.64 Aligned_cols=198 Identities=16% Similarity=0.159 Sum_probs=117.0
Q ss_pred HHHHHHHhhhhhccCCCChHHhhHhHHHHHHHHHH-HHHHHHHhhh-hhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHH
Q 012561 90 EDVEALLSEKMRYKNKFNYKERCENMMDYIKRLRL-CIKWFQELEG-DYAFEHERLRNALELSEQKCAEMELALRNKEEE 167 (461)
Q Consensus 90 edVeALLnEKmk~k~KfdyKgr~EqM~dyIKrLr~-CIrWfqelE~-~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eE 167 (461)
+|+..++.|||. ==-+|-|+|+- |=+|....|. +...=-..+.+.++..-..|..+-..|...+++
T Consensus 22 ~el~~f~keRa~------------iE~~Yak~L~kl~kk~~~~~e~gTl~~a~~~~~~e~e~~a~~H~~ia~~L~~~~~~ 89 (242)
T cd07671 22 KDVEELLKQRAQ------------AEERYGKELVQIARKAGGQTEINTLKASFDQLKQQIENIGNSHIQLAGMLREELKS 89 (242)
T ss_pred HHHHHHHHHHHH------------HHHHHHHHHHHHHhhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666654 33578888854 4455432221 111112234445555567788888888887877
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhh---HHHHHHhhHH--------HHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHh
Q 012561 168 LNLIIVELRKSFASLQEKLAKEESD---KLAALDSLAR--------EKETRLNMERSHA-SLSEDLGKAQEELQSANQRI 235 (461)
Q Consensus 168 L~~~i~ELr~~~~SLqe~L~keese---Kl~a~~s~~k--------EkEaR~~~E~~~~-~LseeL~k~q~E~~~anqqi 235 (461)
+......++..--.++.-+.|...- .+..++.-.+ ++.|....+++-. .=-.|++|++.-+..+.+.+
T Consensus 90 l~~f~~~qke~rK~~e~~~eK~qk~~~~~~k~l~ksKk~Ye~~Cke~~~a~q~~~k~~~~~t~keleK~~~K~~k~~~~~ 169 (242)
T cd07671 90 LEEFRERQKEQRKKYEAVMERVQKSKVSLYKKTMESKKTYEQRCREADEAEQTFERSSSTGNPKQSEKSQNKAKQCRDAA 169 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHH
Confidence 7777777766544444444444333 3333322222 2223233334433 23478999999999999888
Q ss_pred HhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHH
Q 012561 236 ASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEA 308 (461)
Q Consensus 236 ~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea 308 (461)
..-.+-| +.+-.-|..||..-..|-..+-+.+-.+|.|.-.++-+ ..=..-+.|++.=++-|+.
T Consensus 170 ~~a~~~Y---~~~v~~l~~~~~~w~~~~~~~~~~~Q~lEeeRi~f~K~------~lw~~~n~~s~~Cv~dD~~ 233 (242)
T cd07671 170 TEAERVY---KQNIEQLDKARTEWETEHILTCEVFQLQEDDRITILRN------ALWVHCNHFSMQCVKDDEL 233 (242)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhHhHHHHcCcHHH
Confidence 7776655 44455556778888889999999999999887666543 3333344555555555543
No 136
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=89.14 E-value=40 Score=37.22 Aligned_cols=72 Identities=7% Similarity=0.081 Sum_probs=43.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhhhhh---chhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhhhhHHhHHhhhhhhhh
Q 012561 360 LEARCASQSNQIRSLSDQLAAAEEKLEVS---DLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILE 436 (461)
Q Consensus 360 LEetCssQ~eqI~~Lq~QLa~A~eKLk~a---Dlsa~etrte~E~Qk~~i~eLq~RLadaE~kiiEGEkLRKKLHNTILE 436 (461)
++........+...|+.+++..+.++.-. .....+-..+++.-+..+..|..|+.++...- --
T Consensus 343 ~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~--------------~~ 408 (754)
T TIGR01005 343 LLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNYRQAASRQ--------------NY 408 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------cC
Confidence 34444555556667777776665554321 22223334677778888888888988865433 01
Q ss_pred hcccceeee
Q 012561 437 LEVNLSSSA 445 (461)
Q Consensus 437 LKGNIRv~c 445 (461)
--+||||+-
T Consensus 409 ~~~~~~vi~ 417 (754)
T TIGR01005 409 VPVDARVAS 417 (754)
T ss_pred CCCCcEEec
Confidence 346888875
No 137
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.08 E-value=9.5 Score=38.68 Aligned_cols=81 Identities=27% Similarity=0.253 Sum_probs=43.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHH
Q 012561 163 NKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMY 242 (461)
Q Consensus 163 ~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmy 242 (461)
..+++|..-+.+|.+.++.|...+...+.+..+. + +.|. ..=+..+.+.-++...+.+..+++.|+...++-.
T Consensus 57 ~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l-~----~eE~--~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L 129 (314)
T PF04111_consen 57 QEEEELLQELEELEKEREELDQELEELEEELEEL-D----EEEE--EYWREYNELQLELIEFQEERDSLKNQYEYASNQL 129 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H----HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H----HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555544433332221 1 1111 3344556666677777777777777777777777
Q ss_pred HHHHHHHh
Q 012561 243 KLLQEYNS 250 (461)
Q Consensus 243 KRLQEYNT 250 (461)
.||+.+|.
T Consensus 130 ~~L~ktNv 137 (314)
T PF04111_consen 130 DRLRKTNV 137 (314)
T ss_dssp HCHHT--T
T ss_pred HHHHhcCc
Confidence 77777764
No 138
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.06 E-value=53 Score=38.49 Aligned_cols=47 Identities=21% Similarity=0.243 Sum_probs=26.3
Q ss_pred hhhhhhhhhhHHHHHHHhHhhHHHHHHhhHH---HHHHHHHHHHHHhhhh
Q 012561 284 LSTLRGQYISLQEQLSTYKASQDEAMRQKDA---LVHEVASMRVELQQVR 330 (461)
Q Consensus 284 ls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~---L~~Ev~~LR~ELqqvR 330 (461)
.+.|+.++.-|+.||-....+|.+-+.-.++ .-+|+..+|.|-+..-
T Consensus 701 hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~ 750 (970)
T KOG0946|consen 701 HSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAALSENKKLE 750 (970)
T ss_pred HHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHHHHHHHHHH
Confidence 3444445555555777666666655443332 3456666666666554
No 139
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.29 E-value=51 Score=37.34 Aligned_cols=68 Identities=22% Similarity=0.270 Sum_probs=52.7
Q ss_pred HHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH--------------HHHHHHHhHH----hhhhhhHHHHHHhhHHHH
Q 012561 309 MRQKDALVHEVASMRVELQQVRDDRDHQLSQVQA--------------LTAEVIKHKE----LAVSSEDLEARCASQSNQ 370 (461)
Q Consensus 309 ~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~Qvqs--------------L~aE~~~ykE----l~~k~~~LEetCssQ~eq 370 (461)
+.+--.|-+|++-+|.+|-.|+.++||...-++. |.+|+--||. |.-.-.+|||---+-++|
T Consensus 106 l~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKq 185 (772)
T KOG0999|consen 106 LQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQ 185 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 4455678899999999999999999998766654 4567777776 777788888877776667
Q ss_pred HHHHHH
Q 012561 371 IRSLSD 376 (461)
Q Consensus 371 I~~Lq~ 376 (461)
+-.|++
T Consensus 186 Vs~LR~ 191 (772)
T KOG0999|consen 186 VSNLRQ 191 (772)
T ss_pred HHHHhh
Confidence 766654
No 140
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=88.26 E-value=5.3 Score=40.49 Aligned_cols=95 Identities=17% Similarity=0.329 Sum_probs=62.7
Q ss_pred hhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhH
Q 012561 258 KLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQL 337 (461)
Q Consensus 258 kLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~ 337 (461)
....|.....+.+..+++|....++.|..|......|..++.....--.+--.+-...-.+...+..++.+..++||.--
T Consensus 40 ~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~ 119 (314)
T PF04111_consen 40 DSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLK 119 (314)
T ss_dssp --HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777888888888888888887777766666666665554444444445566666667777777777777777
Q ss_pred HHHHHHHHHHHHhHH
Q 012561 338 SQVQALTAEVIKHKE 352 (461)
Q Consensus 338 ~QvqsL~aE~~~ykE 352 (461)
+|++.....+.+.+.
T Consensus 120 ~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 120 NQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 777777666666554
No 141
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=88.25 E-value=9 Score=34.41 Aligned_cols=71 Identities=23% Similarity=0.304 Sum_probs=52.2
Q ss_pred HHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHH
Q 012561 244 LLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDA 314 (461)
Q Consensus 244 RLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~ 314 (461)
+|..-++++|--+..|+..++.....+..+.++|..+=-.+.+|+++..|+..-++...+.-+|+.++.++
T Consensus 6 ~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 6 ALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666788888889999999999999999999999977778888887777777777777777777766655
No 142
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=88.16 E-value=20 Score=32.65 Aligned_cols=98 Identities=18% Similarity=0.263 Sum_probs=71.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhh---HHHHHHHhhhhhhhhhh
Q 012561 216 SLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEK---EKSAIVENLSTLRGQYI 292 (461)
Q Consensus 216 ~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eK---EK~tivEnls~LrG~~~ 292 (461)
+|.-|.+-++.-...+..+++-+++-+..+-.=.+|||.=|+.|..|++.+.+.++.+.. +....+-+.-+|-.++.
T Consensus 4 ~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq 83 (143)
T PF12718_consen 4 ALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQ 83 (143)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHH
Confidence 455566666777777888888888888888888999999999999999999888776542 22222233446777777
Q ss_pred hHHHHHHHhHhhHHHHHHhhH
Q 012561 293 SLQEQLSTYKASQDEAMRQKD 313 (461)
Q Consensus 293 SLq~QL~~skaSq~Ea~kQK~ 313 (461)
.|.++|+.+-....+++..-.
T Consensus 84 ~LEeele~ae~~L~e~~ekl~ 104 (143)
T PF12718_consen 84 LLEEELEEAEKKLKETTEKLR 104 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 788888877777776665544
No 143
>PF13514 AAA_27: AAA domain
Probab=88.07 E-value=60 Score=37.91 Aligned_cols=60 Identities=27% Similarity=0.326 Sum_probs=33.3
Q ss_pred hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhh--chhhhhhhhhhHHhHHHHHHHHHh
Q 012561 353 LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVS--DLSALETKTEFEGQKKLINELRNH 412 (461)
Q Consensus 353 l~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~a--Dlsa~etrte~E~Qk~~i~eLq~R 412 (461)
+......++..-..-..++..|..+++.++..|..- +-++.+...+++..+..|.++-.+
T Consensus 894 l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~a~l~~e~e~~~a~l~~~~~~ 955 (1111)
T PF13514_consen 894 LEAELEELEEELEELEEELEELQEERAELEQELEALEGDDDAAELEQEREEAEAELEELAEE 955 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555666666666666666665532 223444555555555555555444
No 144
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=88.01 E-value=51 Score=37.07 Aligned_cols=81 Identities=21% Similarity=0.355 Sum_probs=44.8
Q ss_pred HHHHhHHHhhHHHHHHh-----hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH----------
Q 012561 183 QEKLAKEESDKLAALDS-----LAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQE---------- 247 (461)
Q Consensus 183 qe~L~keeseKl~a~~s-----~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQE---------- 247 (461)
.+.+.-.+..|+.++.+ ..+++.. .+.....+++++.++++.+-..+.++.+..-++--|+.
T Consensus 383 de~~~~~~~~k~~~~~~~~~~~i~~~~~~---~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s 459 (607)
T KOG0240|consen 383 DEDFSLKEEAKMSAILSEEEMSITKLKGS---LEEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLS 459 (607)
T ss_pred hhhhhHHHHHHhhhhhhhhhhhhhhcccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 35666566666665533 2222222 45556666777777777666666666666555443331
Q ss_pred ----HHhHHHhhhhhhhccHHHH
Q 012561 248 ----YNSSLQHYNTKLQKDIDAA 266 (461)
Q Consensus 248 ----YNTSLQQYNSkLQaDl~~~ 266 (461)
-.+-+|+|.+.+|.+.+.+
T Consensus 460 ~~~~~~e~~q~e~~~~Q~~~e~~ 482 (607)
T KOG0240|consen 460 STRRLYEDIQQELSEIQEENEAA 482 (607)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 1234566777777644444
No 145
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=87.73 E-value=57 Score=37.32 Aligned_cols=149 Identities=26% Similarity=0.333 Sum_probs=106.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhH
Q 012561 215 ASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISL 294 (461)
Q Consensus 215 ~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SL 294 (461)
+.|...|..++.|++.+.+.+.-..-=+-||.--|+-|-.=+..|-..-....+.|+..---=..++-..+.|-.-+-||
T Consensus 30 ~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENisl 109 (717)
T PF09730_consen 30 AYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISL 109 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 45666777778888888877777777777777777666666777777777777777777666667788889999999999
Q ss_pred HHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHH---HHhhHHHHH
Q 012561 295 QEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEA---RCASQSNQI 371 (461)
Q Consensus 295 q~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEe---tCssQ~eqI 371 (461)
|-|+...|.||=| -+.+-+|+.+|-.|++.. ++=..|+...|++..+ -||| +--.-++|-
T Consensus 110 QKqvs~Lk~sQve----fE~~Khei~rl~Ee~~~l-----------~~qlee~~rLk~iae~--qleEALesl~~EReqk 172 (717)
T PF09730_consen 110 QKQVSVLKQSQVE----FEGLKHEIKRLEEEIELL-----------NSQLEEAARLKEIAEK--QLEEALESLKSEREQK 172 (717)
T ss_pred HHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 9999999999965 356666777766666543 3445677777773322 2333 334456777
Q ss_pred HHHHHHHHH
Q 012561 372 RSLSDQLAA 380 (461)
Q Consensus 372 ~~Lq~QLa~ 380 (461)
..|+..|..
T Consensus 173 ~~LrkEL~~ 181 (717)
T PF09730_consen 173 NALRKELDQ 181 (717)
T ss_pred HHHHHHHHH
Confidence 888888875
No 146
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=87.61 E-value=71 Score=38.26 Aligned_cols=278 Identities=22% Similarity=0.206 Sum_probs=158.4
Q ss_pred CCCChHHhhHh----HHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHhhHHHHHH---HHHchHHHHHHHHH
Q 012561 104 NKFNYKERCEN----MMDYIKRLRLCIKWFQELE---GDYAFEHERLRNALELSEQKCAEMEL---ALRNKEEELNLIIV 173 (461)
Q Consensus 104 ~KfdyKgr~Eq----M~dyIKrLr~CIrWfqelE---~~y~~EqekL~~~Le~~ek~~~e~E~---~lk~k~eEL~~~i~ 173 (461)
-||+.--+|++ |---|++||.=|-=|+..- +.|..|..-|.-..+..-..|.+-=. ..|...|||+.-+-
T Consensus 195 EK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ykerlmDs~fykdRveelkedN~ 274 (1195)
T KOG4643|consen 195 EKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKERLMDSDFYKDRVEELKEDNR 274 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccchhhhhhHHHHHHHHHHHhhhH
Confidence 45555555544 3334778887776554432 34555555555555555444443221 23445555554444
Q ss_pred HHHHHHHHHHHHHhHHHhhHHHHHH---hhHHH----HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 012561 174 ELRKSFASLQEKLAKEESDKLAALD---SLARE----KETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQ 246 (461)
Q Consensus 174 ELr~~~~SLqe~L~keeseKl~a~~---s~~kE----kEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQ 246 (461)
-|.....=|+++|.+ +.|=- .++.| +...-....-+++....++++..|.+.+.-+-..|.-.|-++|
T Consensus 275 vLleekeMLeeQLq~-----lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq 349 (1195)
T KOG4643|consen 275 VLLEEKEMLEEQLQK-----LRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQ 349 (1195)
T ss_pred HHHHHHHHHHHHHHH-----HHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhh
Confidence 444444445555444 33311 11111 1223344555667777788888888888777788888888898
Q ss_pred H-------HHhHHHhhhhhhhccH-----------------------HHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHH
Q 012561 247 E-------YNSSLQHYNTKLQKDI-----------------------DAAHESIKRGEKEKSAIVENLSTLRGQYISLQE 296 (461)
Q Consensus 247 E-------YNTSLQQYNSkLQaDl-----------------------~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~ 296 (461)
- -|.|+|--|-.|-+|- ....-.+-.++||+--|---.--|-..++-+-.
T Consensus 350 ~~se~~E~en~Sl~~e~eqLts~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~q 429 (1195)
T KOG4643|consen 350 IFSENEELENESLQVENEQLTSDRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQ 429 (1195)
T ss_pred hhhcchhhhhhhHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHH
Confidence 8 7899998887776621 111111222333333222222223335555555
Q ss_pred HHHHhHhhHHHHHHhhHHHHHHHH----------HHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH----hhhhhhHHHH
Q 012561 297 QLSTYKASQDEAMRQKDALVHEVA----------SMRVELQQVRDDRDHQLSQVQALTAEVIKHKE----LAVSSEDLEA 362 (461)
Q Consensus 297 QL~~skaSq~Ea~kQK~~L~~Ev~----------~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE----l~~k~~~LEe 362 (461)
|++-+..--..++..++.|..|+. .+|+++.|+=.+=|+.+.+...|...+.+.+. -...++.|.+
T Consensus 430 q~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a 509 (1195)
T KOG4643|consen 430 QLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHA 509 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665555554555566666666654 47888888888889999888888888888777 1122333444
Q ss_pred HHhhHHHHHHHHHHHHHHHHhhhh
Q 012561 363 RCASQSNQIRSLSDQLAAAEEKLE 386 (461)
Q Consensus 363 tCssQ~eqI~~Lq~QLa~A~eKLk 386 (461)
.-+--.+|++++..|+.--.+|+.
T Consensus 510 ~~~elkeQ~kt~~~qye~~~~k~e 533 (1195)
T KOG4643|consen 510 LKNELKEQYKTCDIQYELLSNKLE 533 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445677777777776666654
No 147
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=87.52 E-value=27 Score=33.39 Aligned_cols=129 Identities=17% Similarity=0.203 Sum_probs=71.0
Q ss_pred hhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHH
Q 012561 291 YISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQ 370 (461)
Q Consensus 291 ~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eq 370 (461)
.+||+++++..|.-....-+...++..|-..|+.-|++.+.++...-.++.....+-..+..+..+...++..-..-.-.
T Consensus 29 IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e 108 (201)
T PF13851_consen 29 IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWE 108 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777788888888888887777766555555444444444443333333333333333333
Q ss_pred HHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhH----------HHHHHHHHhHHHHhhhhh
Q 012561 371 IRSLSDQLAAAEEKLEVSDLSALETKTEFEGQK----------KLINELRNHLEDAEYKLI 421 (461)
Q Consensus 371 I~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk----------~~i~eLq~RLadaE~kii 421 (461)
-..|++++..-.. ..-++..-...+-++-|+ +.+..|.+.|+..+-+|-
T Consensus 109 ~evL~qr~~kle~--ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~ 167 (201)
T PF13851_consen 109 HEVLEQRFEKLEQ--ERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLN 167 (201)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333332222111 122333333334444444 677788888887777664
No 148
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=87.42 E-value=5 Score=37.47 Aligned_cols=123 Identities=17% Similarity=0.263 Sum_probs=51.3
Q ss_pred HHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHH
Q 012561 230 SANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAM 309 (461)
Q Consensus 230 ~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~ 309 (461)
....++.++++..-.+|+=.+.++.=++-|+.-+......+..++++=..--..|..|+....+|+..+........+--
T Consensus 64 ~~~~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~ 143 (194)
T PF08614_consen 64 VSSAQISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKN 143 (194)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888888888888888888988888888888888887777777788888888888888877777777777
Q ss_pred HhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH
Q 012561 310 RQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE 352 (461)
Q Consensus 310 kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE 352 (461)
+--+.|.+|+..|..++-.+-+-.++.-.+=..|-.....+|.
T Consensus 144 k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~ 186 (194)
T PF08614_consen 144 KANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKA 186 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777888888888887776666555555555555444444443
No 149
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=87.30 E-value=72 Score=38.01 Aligned_cols=196 Identities=21% Similarity=0.322 Sum_probs=117.2
Q ss_pred HHHHHhHHHhhHHHHHHhhHHHHH-HHHHHHHHH----------hhhHHHHHHHHHHH---------------HHHHHHh
Q 012561 182 LQEKLAKEESDKLAALDSLAREKE-TRLNMERSH----------ASLSEDLGKAQEEL---------------QSANQRI 235 (461)
Q Consensus 182 Lqe~L~keeseKl~a~~s~~kEkE-aR~~~E~~~----------~~LseeL~k~q~E~---------------~~anqqi 235 (461)
.+++.+.|.++-.++|+-..=+|| |-.-++.+| ++|+.||+=++.|. +.+.+|-
T Consensus 298 ~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN 377 (1243)
T KOG0971|consen 298 AKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQN 377 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHH
Confidence 345666677777777766555554 222233333 45677777776654 4566666
Q ss_pred HhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhH-------------
Q 012561 236 ASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYK------------- 302 (461)
Q Consensus 236 ~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~sk------------- 302 (461)
.-|-|..=||-..|.+=-|---|||..++.-+-.+..+..-|--+-.-+..+--....||+|.|.+.
T Consensus 378 ~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdkn 457 (1243)
T KOG0971|consen 378 ARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKN 457 (1243)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhc
Confidence 6777777777778888778888999999888877777766665555555566666667777766553
Q ss_pred hhHHHHHHhhHHHHHHHHH------------------HHHHHhhhhhhh-------hhhHHHHHHHHHHHHHhHHhhhhh
Q 012561 303 ASQDEAMRQKDALVHEVAS------------------MRVELQQVRDDR-------DHQLSQVQALTAEVIKHKELAVSS 357 (461)
Q Consensus 303 aSq~Ea~kQK~~L~~Ev~~------------------LR~ELqqvRdDR-------Dr~~~QvqsL~aE~~~ykEl~~k~ 357 (461)
--.+|.+++-++-+.+++. ||.||.+..--| +-..--|-.+.--|.||+||+++.
T Consensus 458 lnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~L 537 (1243)
T KOG0971|consen 458 LNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHL 537 (1243)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 2345555555544444333 444444442222 112222333444567778777765
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHhhhhh
Q 012561 358 EDLEARCASQSNQIRSLSDQLAAAEEKLEV 387 (461)
Q Consensus 358 ~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~ 387 (461)
++ ||..+.+|-....+-+.-
T Consensus 538 qd----------qlqe~~dq~~Sseees~q 557 (1243)
T KOG0971|consen 538 QD----------QLQELTDQQESSEEESQQ 557 (1243)
T ss_pred HH----------HHHHHHhhhhhhHHHhcC
Confidence 53 677776665555554443
No 150
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=87.08 E-value=38 Score=37.43 Aligned_cols=84 Identities=27% Similarity=0.350 Sum_probs=58.2
Q ss_pred HHHHHHHhHHHhhhhhhhccHH---HHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHH
Q 012561 243 KLLQEYNSSLQHYNTKLQKDID---AAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEV 319 (461)
Q Consensus 243 KRLQEYNTSLQQYNSkLQaDl~---~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev 319 (461)
+|+-+-.+.||.+.||.-.=.. .....+.-.+++|.++.+.|..+.|.++.|||.|.+.+.+=++ |-..+..-|
T Consensus 420 ~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~---QLs~MSEHL 496 (518)
T PF10212_consen 420 SRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEE---QLSMMSEHL 496 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHH
Confidence 4666667777777777654333 3334455557888899999999999999999999999888765 444555556
Q ss_pred HHHHHHHhhh
Q 012561 320 ASMRVELQQV 329 (461)
Q Consensus 320 ~~LR~ELqqv 329 (461)
.+|...|-.-
T Consensus 497 asmNeqL~~Q 506 (518)
T PF10212_consen 497 ASMNEQLAKQ 506 (518)
T ss_pred HHHHHHHHHH
Confidence 6655554433
No 151
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=86.92 E-value=60 Score=36.72 Aligned_cols=84 Identities=18% Similarity=0.216 Sum_probs=39.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-----HHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHH
Q 012561 193 KLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSA-----NQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAH 267 (461)
Q Consensus 193 Kl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~a-----nqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~ 267 (461)
=..+|.-+++-..-...+|+.-..|..+|.++.+....+ ++....|+-+-+-.+.-++++|+-=+.|+-...+-.
T Consensus 237 v~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~ 316 (629)
T KOG0963|consen 237 VSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHK 316 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555555555555555555554443 112222222222233335555555555555555555
Q ss_pred HHHhhhhhH
Q 012561 268 ESIKRGEKE 276 (461)
Q Consensus 268 e~~~r~eKE 276 (461)
..|+.|+++
T Consensus 317 ~qI~~le~~ 325 (629)
T KOG0963|consen 317 AQISALEKE 325 (629)
T ss_pred HHHHHHHHH
Confidence 555555544
No 152
>PF15294 Leu_zip: Leucine zipper
Probab=86.85 E-value=40 Score=34.58 Aligned_cols=146 Identities=19% Similarity=0.301 Sum_probs=70.1
Q ss_pred hHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHH--HHHHhhhhhhhhhhhH
Q 012561 217 LSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKS--AIVENLSTLRGQYISL 294 (461)
Q Consensus 217 LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~--tivEnls~LrG~~~SL 294 (461)
|..|+.+++.|-..+..++.+++..+--.-+=++ +|++.|-..........--++ .=...++.|-.....|
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~-------kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~l 202 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKS-------KLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAAL 202 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHH
Confidence 6666666666666666666666654432222222 222222111110000000010 1112334444444444
Q ss_pred HHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHH
Q 012561 295 QEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSL 374 (461)
Q Consensus 295 q~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~L 374 (461)
+.+|.-+ ..+-..+.++|-..|.+-..+|..|.+.-+..-..+.. +|.+ +.--..+-+--+..++||+.|
T Consensus 203 K~e~ek~---~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLek------Kfqq-T~ay~NMk~~ltkKn~QiKeL 272 (278)
T PF15294_consen 203 KSELEKA---LQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELEK------KFQQ-TAAYRNMKEILTKKNEQIKEL 272 (278)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHHH------HhCc-cHHHHHhHHHHHhccHHHHHH
Confidence 4444432 33334455667777777777777777663332222222 2222 222333445567778899999
Q ss_pred HHHHH
Q 012561 375 SDQLA 379 (461)
Q Consensus 375 q~QLa 379 (461)
+..|.
T Consensus 273 Rkrl~ 277 (278)
T PF15294_consen 273 RKRLA 277 (278)
T ss_pred HHHhc
Confidence 98874
No 153
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=86.64 E-value=41 Score=34.48 Aligned_cols=123 Identities=16% Similarity=0.181 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhH----HHHH
Q 012561 223 KAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISL----QEQL 298 (461)
Q Consensus 223 k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SL----q~QL 298 (461)
|++....=..=+.+.++++...|.+.=..||.=...|=.+++.+.+..-.+...++.+..-+..|+-...-+ ++.|
T Consensus 127 Rl~ak~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL 206 (312)
T smart00787 127 RLEAKKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTEL 206 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHH
Confidence 333333344446667788888888887777776666777777777777777777777777777666544433 2233
Q ss_pred HHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH
Q 012561 299 STYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE 352 (461)
Q Consensus 299 ~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE 352 (461)
..+|....+ +..|+...|.+|.++++.....-+.+++.......+.+
T Consensus 207 ~~lk~~l~~-------~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~ 253 (312)
T smart00787 207 DRAKEKLKK-------LLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNT 253 (312)
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333332222 23344444555555555544444555555555555444
No 154
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=86.53 E-value=33 Score=34.45 Aligned_cols=94 Identities=20% Similarity=0.201 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhH
Q 012561 139 EHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLS 218 (461)
Q Consensus 139 EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~Ls 218 (461)
|.++|+.+.+..-+...|++.....-+.++..+.+.|...-.-...+ ....+.+-++.+.++-+ +...+.+..-+.
T Consensus 44 e~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~---~~k~~~dF~~~Lq~~Lk-~V~tde~k~~~~ 119 (230)
T PF03904_consen 44 EIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDK---TEKVHNDFQDILQDELK-DVDTDELKNIAQ 119 (230)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-hhchHHHHHHHH
Confidence 78899999999999999999999999999998888776644444433 33444444444433322 224444444455
Q ss_pred HHHHHHHHHHHHHHHHhH
Q 012561 219 EDLGKAQEELQSANQRIA 236 (461)
Q Consensus 219 eeL~k~q~E~~~anqqi~ 236 (461)
.|+-+++.|..+.-+.++
T Consensus 120 ~ei~k~r~e~~~ml~evK 137 (230)
T PF03904_consen 120 NEIKKVREENKSMLQEVK 137 (230)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555554444433
No 155
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=86.17 E-value=73 Score=36.96 Aligned_cols=77 Identities=21% Similarity=0.208 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHH
Q 012561 239 NDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHE 318 (461)
Q Consensus 239 qDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~E 318 (461)
+...+++|--=++---||+++|++++...+. -.++.-++..+|| -| | -..+.-|++|-.+...|+--
T Consensus 522 ~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~-------~~a~qat~d~a~~---Dl--q-k~nrlkQdear~~~~~lvqq 588 (961)
T KOG4673|consen 522 QETIEKHQAELTRQKDYYSNSRALAAALEAQ-------ALAEQATNDEARS---DL--Q-KENRLKQDEARERESMLVQQ 588 (961)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-------HHHHHHhhhhhhh---hH--H-HHhhhhhhHHHHHHHHHHHH
Confidence 3333444444444456777777776554332 2344445555555 11 1 12233477777777777777
Q ss_pred HHHHHHHHhh
Q 012561 319 VASMRVELQQ 328 (461)
Q Consensus 319 v~~LR~ELqq 328 (461)
|.-||--|+.
T Consensus 589 v~dLR~~L~~ 598 (961)
T KOG4673|consen 589 VEDLRQTLSK 598 (961)
T ss_pred HHHHHHHHHH
Confidence 7777766653
No 156
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=85.89 E-value=30 Score=39.20 Aligned_cols=150 Identities=23% Similarity=0.366 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHH
Q 012561 238 INDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVH 317 (461)
Q Consensus 238 lqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~ 317 (461)
+.+++-+||=| .|+-|..|.....-+--.+=|+-.|=..|-.....|+++..++++.+.....+=...+. -+.
T Consensus 36 ls~l~~kLql~---~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~~~~~~v~~~~~~~e~~t~~s~~----~L~ 108 (766)
T PF10191_consen 36 LSSLVMKLQLY---SQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQEQMASVQEEIKAVEQDTAQSMA----QLA 108 (766)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHH----HHH
Confidence 33444444422 34446666665555555666788888888888888888888888888654332222332 356
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhh
Q 012561 318 EVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKT 397 (461)
Q Consensus 318 Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrt 397 (461)
++...+.-++..++- =+......+|.++|. +...++ .|...-..|+..+.=|.+ +.-.-
T Consensus 109 ~ld~vK~rm~~a~~~-L~EA~~w~~l~~~v~-------------~~~~~~--d~~~~a~~l~~m~~sL~~-----l~~~p 167 (766)
T PF10191_consen 109 ELDSVKSRMEAARET-LQEADNWSTLSAEVD-------------DLFESG--DIAKIADRLAEMQRSLAV-----LQDVP 167 (766)
T ss_pred HHHHHHHHHHHHHHH-HHHHHhHHHHHHHHH-------------HHHhcC--CHHHHHHHHHHHHHHHHH-----HcCCC
Confidence 677777777776654 334444445555543 333222 455555566655555544 22345
Q ss_pred hhHHhHHHHHHHHHhHHH
Q 012561 398 EFEGQKKLINELRNHLED 415 (461)
Q Consensus 398 e~E~Qk~~i~eLq~RLad 415 (461)
+|++.+..++.|++||+.
T Consensus 168 d~~~r~~~le~l~nrLEa 185 (766)
T PF10191_consen 168 DYEERRQQLEALKNRLEA 185 (766)
T ss_pred chhHHHHHHHHHHHHHHH
Confidence 899999999999999987
No 157
>PF13166 AAA_13: AAA domain
Probab=85.70 E-value=58 Score=35.33 Aligned_cols=17 Identities=18% Similarity=0.391 Sum_probs=7.9
Q ss_pred HHHHHHHHHhHHHhhhh
Q 012561 241 MYKLLQEYNSSLQHYNT 257 (461)
Q Consensus 241 myKRLQEYNTSLQQYNS 257 (461)
+...++++|+.+..+|.
T Consensus 368 l~~~i~~~n~~i~~~n~ 384 (712)
T PF13166_consen 368 LNSIIDELNELIEEHNE 384 (712)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 158
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=85.58 E-value=38 Score=33.13 Aligned_cols=126 Identities=14% Similarity=0.225 Sum_probs=85.7
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHH
Q 012561 227 ELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQD 306 (461)
Q Consensus 227 E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~ 306 (461)
-.............|-+-..+|...+++.-.-.|.+-..+...+.++.+||......|+.+--.++.|-....-.|..-.
T Consensus 28 l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~ 107 (207)
T PF05010_consen 28 LKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIE 107 (207)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34455566677788899999999999999999999999999999999999999999999998888888777776665422
Q ss_pred HHHHh----hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH
Q 012561 307 EAMRQ----KDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE 352 (461)
Q Consensus 307 Ea~kQ----K~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE 352 (461)
.--+- |+.+..-+.+++.+=|+.---++|.-.+++....|++..+-
T Consensus 108 ~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~ 157 (207)
T PF05010_consen 108 GYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRS 157 (207)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 22333333444444444444444444555555555554444
No 159
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=85.45 E-value=12 Score=36.08 Aligned_cols=67 Identities=16% Similarity=0.263 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhh
Q 012561 224 AQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQ 290 (461)
Q Consensus 224 ~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~ 290 (461)
.|..+....++-..+.+-|+.|..=..+|+-||..|+.-++.....+..++.....|..+...|.+.
T Consensus 40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~ 106 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPL 106 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555556666666666777777777777777777888887777777776666664
No 160
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=85.33 E-value=59 Score=35.14 Aligned_cols=67 Identities=24% Similarity=0.292 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH-hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhh
Q 012561 311 QKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE-LAVSSEDLEARCASQSNQIRSLSDQLAAAEEK 384 (461)
Q Consensus 311 QK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE-l~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eK 384 (461)
+.+.+..|...=+..|.+.+.+|..-+.+.++....-.++.+ |..+...|.. .|.+++.+.+.+.|+
T Consensus 186 ~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~-------~Ias~e~~aA~~re~ 253 (420)
T COG4942 186 ELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKN-------EIASAEAAAAKAREA 253 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 344555666777788889999999999988876665555544 7777766665 455555555544444
No 161
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=85.30 E-value=27 Score=31.16 Aligned_cols=100 Identities=20% Similarity=0.371 Sum_probs=56.7
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHh
Q 012561 304 SQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEE 383 (461)
Q Consensus 304 Sq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~e 383 (461)
+.+.-+.+++.|...+..++.|+.+.. ..++.|...++...- +...+++.+.....+++.++..+...++
T Consensus 46 ~~~r~~~~~e~l~~~~~~l~~d~~~l~-------~~~~rL~~~~~~~er---e~~~~~~~~~~l~~~~~~~~~~~k~~ke 115 (151)
T PF11559_consen 46 QRDRDMEQREDLSDKLRRLRSDIERLQ-------NDVERLKEQLEELER---ELASAEEKERQLQKQLKSLEAKLKQEKE 115 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777776665544 444555544444433 4445555666666666666666666555
Q ss_pred hhhhhchhhhhhhhhhHHhHH----HHHHHHHhH
Q 012561 384 KLEVSDLSALETKTEFEGQKK----LINELRNHL 413 (461)
Q Consensus 384 KLk~aDlsa~etrte~E~Qk~----~i~eLq~RL 413 (461)
-+...-...--.+|.|+-..+ -|.-|++||
T Consensus 116 e~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 116 ELQKLKNQLQQRKTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555444455555666655443 234444444
No 162
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=84.66 E-value=42 Score=32.90 Aligned_cols=179 Identities=17% Similarity=0.158 Sum_probs=103.1
Q ss_pred HHhhHhHHHHHHHHH-HHHHHHHHh-hh-hhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHH---HHHHHHHHHH
Q 012561 109 KERCENMMDYIKRLR-LCIKWFQEL-EG-DYAFEHERLRNALELSEQKCAEMELALRNKEEELNLII---VELRKSFASL 182 (461)
Q Consensus 109 Kgr~EqM~dyIKrLr-~CIrWfqel-E~-~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i---~ELr~~~~SL 182 (461)
++|..==-+|-|+|+ +|-+|-.-- |. +.-.=-..+.+.++..=..|..+-..|..-.+.+.... .+-|+.+.+-
T Consensus 29 kERA~IE~~YaK~L~kLskk~~~g~~E~GTl~~sw~~~~~E~e~~a~~H~~la~~L~~~~~~~~~f~~~qk~~rKk~e~~ 108 (240)
T cd07672 29 KERASIEEKYGKELLNLSKKKPCGQTEINTLKRSLDVFKQQIDNVGQSHIQLAQTLRDEAKKMEDFRERQKLARKKIELI 108 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444468999998 788885311 11 11111233445555555667777776765443333333 3334444454
Q ss_pred HHHHhHHHhhHHHHHHh----hH----HHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHH
Q 012561 183 QEKLAKEESDKLAALDS----LA----REKETRLNMERSHASL-SEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQ 253 (461)
Q Consensus 183 qe~L~keeseKl~a~~s----~~----kEkEaR~~~E~~~~~L-seeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQ 253 (461)
-+++.|-....+..++. |. ++..|+....+.-... -.|++|++.-+..+.+.+....+=| +.+...|.
T Consensus 109 ~ek~~K~~~~~~k~~~ksKk~Ye~~Cke~~~a~~~~~~~~~~~~~ke~~K~~~Kl~K~~~~~~k~~~~Y---~~~v~~l~ 185 (240)
T cd07672 109 MDAIHKQRAMQFKKTMESKKNYEQKCRDKDEAEQAVNRNANLVNVKQQEKLFAKLAQSKQNAEDADRLY---MQNISVLD 185 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 45554444433333322 22 1223333333322222 4689999999999988887766655 45677777
Q ss_pred hhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhh
Q 012561 254 HYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYI 292 (461)
Q Consensus 254 QYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~ 292 (461)
.||..-..|-..+-...-.+|.|.-.++-+ +|=+|.|
T Consensus 186 ~~~~~w~~~~~~~c~~fq~lEeeRi~f~k~--~lw~~~n 222 (240)
T cd07672 186 KIREDWQKEHVKACEFFEKQECERINFFRN--AVWTHVN 222 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh
Confidence 778888888888888888888888776654 4445544
No 163
>PF13514 AAA_27: AAA domain
Probab=84.63 E-value=88 Score=36.56 Aligned_cols=10 Identities=30% Similarity=0.564 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 012561 369 NQIRSLSDQL 378 (461)
Q Consensus 369 eqI~~Lq~QL 378 (461)
.+|..++.+|
T Consensus 861 ~~~~~~~~~l 870 (1111)
T PF13514_consen 861 EELEDLERQL 870 (1111)
T ss_pred HHHHHHHHHH
Confidence 3344444444
No 164
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.32 E-value=93 Score=36.59 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhh
Q 012561 216 SLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQ 260 (461)
Q Consensus 216 ~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQ 260 (461)
+..++|+.+..|.+.... -.++.-|-|-+||+-.|++-..-+
T Consensus 734 t~~eel~a~~~e~k~l~~---~q~~l~~~L~k~~~~~es~k~~~~ 775 (970)
T KOG0946|consen 734 TQNEELNAALSENKKLEN---DQELLTKELNKKNADIESFKATQR 775 (970)
T ss_pred CChHHHHHHHHHHHHHHH---HHHHHHHHHHhhhHHHHHHHHHHh
Confidence 345666666666655542 235667788888888888755443
No 165
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=84.07 E-value=14 Score=35.12 Aligned_cols=36 Identities=31% Similarity=0.374 Sum_probs=25.7
Q ss_pred HHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHH
Q 012561 160 ALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLA 195 (461)
Q Consensus 160 ~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~ 195 (461)
.+++++++|+.-+.+++..++.|+++|......+-+
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~ 101 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREE 101 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 566677777777888888888888877776555433
No 166
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=84.04 E-value=0.66 Score=50.22 Aligned_cols=36 Identities=11% Similarity=-0.000 Sum_probs=33.0
Q ss_pred hhhhhhHHhHHhhhhhhhhhcccceeeeeeccCCCCC
Q 012561 418 YKLIEGEKLRKRLHNTILELEVNLSSSALFRRGLKDI 454 (461)
Q Consensus 418 ~kiiEGEkLRKKLHNTILELKGNIRv~crvrp~l~~~ 454 (461)
+..+-..+|+..||+.+-+.. ||||||+|+|.+++.
T Consensus 285 ~ipyReskLTRlLq~sLgG~~-~~~~i~~Isp~~~~~ 320 (568)
T COG5059 285 HIPYRESKLTRLLQDSLGGNC-NTRVICTISPSSNSF 320 (568)
T ss_pred ccchhhhHHHHHHHHhcCCCc-cEEEEEEEcCCCCch
Confidence 467888999999999999999 999999999999874
No 167
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=83.96 E-value=79 Score=35.45 Aligned_cols=96 Identities=22% Similarity=0.275 Sum_probs=52.1
Q ss_pred HHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHH
Q 012561 325 ELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKK 404 (461)
Q Consensus 325 ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~ 404 (461)
|++.....||+.+++.|-.. +.|.-|+....+|--.+--|...+..||++-.-.+- ..|-..
T Consensus 224 E~~~Lq~q~dq~~~~Lqqy~---a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~--------------~~E~~~- 285 (617)
T PF15070_consen 224 EAQSLQEQRDQYLGHLQQYV---AAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGKV--------------QLEMAH- 285 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH--------------HHHHHH-
Confidence 56666677777777776653 345555555555655555555555666544322211 111122
Q ss_pred HHHHHHHhHHHHhhhhhhhHHhHHhhhhhhhhhccc
Q 012561 405 LINELRNHLEDAEYKLIEGEKLRKRLHNTILELEVN 440 (461)
Q Consensus 405 ~i~eLq~RLadaE~kiiEGEkLRKKLHNTILELKGN 440 (461)
.+|+.--+.-|.-.-+-+-|+-.|+++.+.--|.
T Consensus 286 --~ELq~~qe~Lea~~qqNqqL~~qls~~~~~~eg~ 319 (617)
T PF15070_consen 286 --QELQEAQEHLEALSQQNQQLQAQLSLMALPGEGD 319 (617)
T ss_pred --HHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCCc
Confidence 3333333333444556677888888877776554
No 168
>PRK10884 SH3 domain-containing protein; Provisional
Probab=83.92 E-value=12 Score=36.20 Aligned_cols=26 Identities=23% Similarity=0.288 Sum_probs=12.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHhHHH
Q 012561 215 ASLSEDLGKAQEELQSANQRIASIND 240 (461)
Q Consensus 215 ~~LseeL~k~q~E~~~anqqi~slqD 240 (461)
..|.++|..++.+...++.++..++|
T Consensus 142 ~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 142 QKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555544444443
No 169
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=83.63 E-value=29 Score=32.58 Aligned_cols=112 Identities=21% Similarity=0.346 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHH
Q 012561 238 INDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVH 317 (461)
Q Consensus 238 lqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~ 317 (461)
++.+|..+-.=|+....|+.+.++--..-.+.+ =++.|..+.+.|+.|++.... ...
T Consensus 68 ~d~~~P~ii~~~~~I~~Y~~~f~syY~~L~~~i--d~~~~~~~~~~i~~L~~~i~~---------------------~q~ 124 (184)
T PF05791_consen 68 LDTIKPQIIDLNQDIINYNTTFQSYYDTLVEAI--DQKDKEDLKEIIEDLQDQIQK---------------------NQD 124 (184)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHT-HHHHHHHHHHHHHHHHH---------------------HHH
T ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CcccHHHHHHHHHHHHHHHHH---------------------HHH
Confidence 345566666666666666666665555555555 566777778887777663211 122
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhh
Q 012561 318 EVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKL 385 (461)
Q Consensus 318 Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKL 385 (461)
+|..+-.+|.+.|+ .-...+.+|.. .++.+.....+...-|..|+.+|..-+...
T Consensus 125 ~~~~~i~~L~~f~~---~l~~D~~~l~~----------~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I 179 (184)
T PF05791_consen 125 KVQALINELNDFKD---KLQKDSRNLKT----------DVDELQSILAGENGDIPQLQKQIENLNEEI 179 (184)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHH----------HHHHHHHHHHHTT--HHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHH----------hHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 33444444444443 22223333333 444555566666778888888887776654
No 170
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=83.58 E-value=11 Score=41.44 Aligned_cols=85 Identities=21% Similarity=0.283 Sum_probs=42.5
Q ss_pred HhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHH----Hhhhhhhh
Q 012561 214 HASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIV----ENLSTLRG 289 (461)
Q Consensus 214 ~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tiv----Enls~LrG 289 (461)
..--...++.+..+++-+.-+....-+.+.-|+.==....+=...+...+..+...+.++|.|..|-- +.|++|-.
T Consensus 415 k~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSE 494 (518)
T PF10212_consen 415 KSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSE 494 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33444445555555555554444444444444433333344444455555555555666655555432 34555555
Q ss_pred hhhhHHHHH
Q 012561 290 QYISLQEQL 298 (461)
Q Consensus 290 ~~~SLq~QL 298 (461)
|..+|++||
T Consensus 495 HLasmNeqL 503 (518)
T PF10212_consen 495 HLASMNEQL 503 (518)
T ss_pred HHHHHHHHH
Confidence 555555555
No 171
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=83.32 E-value=47 Score=32.33 Aligned_cols=57 Identities=11% Similarity=0.155 Sum_probs=27.1
Q ss_pred HHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH
Q 012561 296 EQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE 352 (461)
Q Consensus 296 ~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE 352 (461)
.+++.+++....+..|...+...+..+..++...+..-...-+++.....++..|+.
T Consensus 80 ~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~~ 136 (334)
T TIGR00998 80 LALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRRRVP 136 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344444444444444444444444444444444444444444445555556666666
No 172
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=83.04 E-value=1.1e+02 Score=36.54 Aligned_cols=99 Identities=15% Similarity=0.249 Sum_probs=59.3
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH----hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhch----
Q 012561 319 VASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE----LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDL---- 390 (461)
Q Consensus 319 v~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE----l~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDl---- 390 (461)
..--+.|.-++++++|+.-.++-.|..++..+-. |-....++...||.-..-+..--..+..--+||.-.|-
T Consensus 243 y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~ 322 (1072)
T KOG0979|consen 243 YKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEE 322 (1072)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344788899999999999999999888776644 44444556666666554444333333333333333333
Q ss_pred ----------hhhhhhhhhHHhHHHHHHHHHhHHHHh
Q 012561 391 ----------SALETKTEFEGQKKLINELRNHLEDAE 417 (461)
Q Consensus 391 ----------sa~etrte~E~Qk~~i~eLq~RLadaE 417 (461)
-+--+++..+.=++.|.++|.+|..++
T Consensus 323 ~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~ 359 (1072)
T KOG0979|consen 323 KKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQETE 359 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 334445555556666666666666543
No 173
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=82.71 E-value=11 Score=30.95 Aligned_cols=37 Identities=24% Similarity=0.247 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH
Q 012561 316 VHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE 352 (461)
Q Consensus 316 ~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE 352 (461)
...+...-.++..++.+||..+.+++..-.++.+.++
T Consensus 18 ~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~ 54 (69)
T PF14197_consen 18 TRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKE 54 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444467777888999999999999999999988
No 174
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=82.67 E-value=22 Score=36.86 Aligned_cols=102 Identities=23% Similarity=0.243 Sum_probs=83.1
Q ss_pred hhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHH
Q 012561 284 LSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEAR 363 (461)
Q Consensus 284 ls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEet 363 (461)
+--|+--..-=|-||++.-|+.+-.-+.-+.-.+|+..|..|.|.+.+..|...-..+.|+.|+.. || ..++-||..
T Consensus 27 ldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~-Ke--~qv~~lEgQ 103 (307)
T PF10481_consen 27 LDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQV-KE--SQVNFLEGQ 103 (307)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhh-hH--HHHHHHHHH
Confidence 333444444557799999999887777777888999999999999999999999999999999864 45 467889999
Q ss_pred HhhHHHHHHHHHHHHHHHHhhhhhh
Q 012561 364 CASQSNQIRSLSDQLAAAEEKLEVS 388 (461)
Q Consensus 364 CssQ~eqI~~Lq~QLa~A~eKLk~a 388 (461)
.++-..||..|++.|-.-+.-|..+
T Consensus 104 l~s~Kkqie~Leqelkr~KsELErs 128 (307)
T PF10481_consen 104 LNSCKKQIEKLEQELKRCKSELERS 128 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887776666554
No 175
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=82.55 E-value=31 Score=35.41 Aligned_cols=150 Identities=23% Similarity=0.302 Sum_probs=93.7
Q ss_pred hhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhh---hhhhhHHH-----HH-
Q 012561 271 KRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRD---DRDHQLSQ-----VQ- 341 (461)
Q Consensus 271 ~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRd---DRDr~~~Q-----vq- 341 (461)
..|--||++++=.+-+|++..-.|+++++..+-.-.+.++..+.+-....+|+.|+..+|+ .||..+.. |-
T Consensus 101 aQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVlv~~ 180 (302)
T PF09738_consen 101 AQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEKHGLVLVPD 180 (302)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeeCCC
Confidence 3455688888888999999999999999998888888888777777777777777666664 34433321 00
Q ss_pred -------------------HHHHHHHHhHH------hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhh-----hhchh
Q 012561 342 -------------------ALTAEVIKHKE------LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLE-----VSDLS 391 (461)
Q Consensus 342 -------------------sL~aE~~~ykE------l~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk-----~aDls 391 (461)
-.+.|-+..-+ |-++...|-+.=-.=.+||+-|..||..-..+-. ..|-+
T Consensus 181 ~~ngd~~~~~~~~~~~~~~~vs~e~a~~L~~aG~g~LDvRLkKl~~eke~L~~qv~klk~qLee~~~~~~~~~~~~~~~~ 260 (302)
T PF09738_consen 181 ATNGDTSDEPNNVGHPKRALVSQEAAQLLESAGDGSLDVRLKKLADEKEELLEQVRKLKLQLEERQSEGRRQKSSSENGV 260 (302)
T ss_pred CCCCccccCccccCCCcccccchhhhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcc
Confidence 00011111111 4445555554444455789999999965433333 22222
Q ss_pred h-----hhh--hhhhHHh---HHHHHHHHHhHHHHhhhh
Q 012561 392 A-----LET--KTEFEGQ---KKLINELRNHLEDAEYKL 420 (461)
Q Consensus 392 a-----~et--rte~E~Q---k~~i~eLq~RLadaE~ki 420 (461)
+ +|- .--++-| -+.|.++..+|..||+-|
T Consensus 261 l~~~~~~En~d~~~~d~qrdanrqisd~KfKl~KaEQei 299 (302)
T PF09738_consen 261 LGDDEDLENTDLHFIDLQRDANRQISDYKFKLQKAEQEI 299 (302)
T ss_pred cccccccccccccHHHhhhHHHHHHHHHHHHHHHHHHhh
Confidence 2 121 1113456 789999999999999865
No 176
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=82.16 E-value=1.2e+02 Score=36.05 Aligned_cols=103 Identities=17% Similarity=0.224 Sum_probs=55.3
Q ss_pred HHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 012561 266 AHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTA 345 (461)
Q Consensus 266 ~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~a 345 (461)
-.+.+..+.-+++.++ -+|.-.+.||.++.-+++++-+++..|..=|+.+-.+.+++---=.-+...+.+|..
T Consensus 429 lkek~t~l~~~h~~lL-------~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~ 501 (980)
T KOG0980|consen 429 LKEKYTELRQEHADLL-------RKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQ 501 (980)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444555555554443 357777888888888888777777777777666655555521111112223444444
Q ss_pred HHHHhHH----hhhhhhHHHHHHhhHHHHHHHHH
Q 012561 346 EVIKHKE----LAVSSEDLEARCASQSNQIRSLS 375 (461)
Q Consensus 346 E~~~ykE----l~~k~~~LEetCssQ~eqI~~Lq 375 (461)
|++..-. |..++..+.+..+.|..++..+.
T Consensus 502 El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l 535 (980)
T KOG0980|consen 502 ELALLLIELEELQRTLSNLAQSHNNQLAQLEDLL 535 (980)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4443322 44444444444555555554443
No 177
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.06 E-value=1.1e+02 Score=35.96 Aligned_cols=94 Identities=17% Similarity=0.305 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHH
Q 012561 219 EDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQL 298 (461)
Q Consensus 219 eeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL 298 (461)
+||+|-+.-.-.-+..-.|++.++ |=||.|--|---|..||-.+++.+..+..+ -|..--..--+
T Consensus 403 ~ElEkqRqlewErar~qem~~Qk~-reqe~iv~~nak~~ql~~eletLn~k~qql--------------s~kl~Dvr~~~ 467 (1118)
T KOG1029|consen 403 EELEKQRQLEWERARRQEMLNQKN-REQEWIVYLNAKKKQLQQELETLNFKLQQL--------------SGKLQDVRVDI 467 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hhhhhhheecc
Confidence 556665433333333334444444 568887776666666777766666555433 23222222234
Q ss_pred HHhHhhHHHHHHhhHHHHHHHHHHHHHHh
Q 012561 299 STYKASQDEAMRQKDALVHEVASMRVELQ 327 (461)
Q Consensus 299 ~~skaSq~Ea~kQK~~L~~Ev~~LR~ELq 327 (461)
...|.--++..+|++--..|+.-|...||
T Consensus 468 tt~kt~ie~~~~q~e~~isei~qlqarik 496 (1118)
T KOG1029|consen 468 TTQKTEIEEVTKQRELMISEIDQLQARIK 496 (1118)
T ss_pred chHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555544444
No 178
>PF13166 AAA_13: AAA domain
Probab=81.67 E-value=84 Score=34.12 Aligned_cols=6 Identities=33% Similarity=0.362 Sum_probs=2.7
Q ss_pred eeeecc
Q 012561 444 SALFRR 449 (461)
Q Consensus 444 ~crvrp 449 (461)
|..+|+
T Consensus 487 y~l~~~ 492 (712)
T PF13166_consen 487 YKLQRK 492 (712)
T ss_pred EEEEEC
Confidence 444444
No 179
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=81.26 E-value=55 Score=31.71 Aligned_cols=121 Identities=19% Similarity=0.178 Sum_probs=63.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHH-HHH-HHHHHHHHHHHhHHHhhHHHHHHhhHHHHHH
Q 012561 129 FQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLII-VEL-RKSFASLQEKLAKEESDKLAALDSLAREKET 206 (461)
Q Consensus 129 fqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i-~EL-r~~~~SLqe~L~keeseKl~a~~s~~kEkEa 206 (461)
|..+-...-.|+.-|+..++..+..|.+....|+.+.-+=.+-+ -++ ...+.+|.+.-.++=..|.-|++. .|
T Consensus 76 ~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke~~e~~i~~l~e~a~~el~~k~~ale~-----~A 150 (206)
T PF14988_consen 76 FRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQEKARLEKEASELKILQLGERAHKELKKKAQALEL-----AA 150 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHhhHHHHHHHHHHHH-----HH
Confidence 44444445555555555555555555555555544443333332 222 223333333333332233222221 24
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHh
Q 012561 207 RLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQH 254 (461)
Q Consensus 207 R~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQ 254 (461)
..+.-.--.++-.|-.+++.++....++...|+++...|.+=++.|++
T Consensus 151 ~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~ 198 (206)
T PF14988_consen 151 KKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQ 198 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445566677777777777777778888888888777777754
No 180
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=81.17 E-value=53 Score=31.53 Aligned_cols=167 Identities=19% Similarity=0.184 Sum_probs=84.4
Q ss_pred HchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHH
Q 012561 162 RNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDM 241 (461)
Q Consensus 162 k~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDm 241 (461)
+.+..++..+|...=+.+..++.+|.+....-......+ ..-.-...|......+.+|.-++..+..+|.++.++++-
T Consensus 37 ~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~--~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~ 114 (240)
T PF12795_consen 37 KKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEIL--ANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTR 114 (240)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCc--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344555555555555555555555555543300000000 111122334444455556666667777777777666655
Q ss_pred HHHHH----HHHhHHHhhhhhhhcc-----HHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhh
Q 012561 242 YKLLQ----EYNSSLQHYNTKLQKD-----IDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQK 312 (461)
Q Consensus 242 yKRLQ----EYNTSLQQYNSkLQaD-----l~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK 312 (461)
-.|.| +-...||+-+..|++- -.......-.++.|-+.+--.+..|+=--.|.....+.++.-.|...++.
T Consensus 115 p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~ 194 (240)
T PF12795_consen 115 PERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARI 194 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHH
Confidence 44443 3444555555555531 12223345556666665555555555444444444555555555555555
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 012561 313 DALVHEVASMRVELQQVR 330 (461)
Q Consensus 313 ~~L~~Ev~~LR~ELqqvR 330 (461)
..+-.++..|+.-|-+.|
T Consensus 195 ~~l~~~l~~Lq~~ln~~R 212 (240)
T PF12795_consen 195 QRLQQQLQALQNLLNQKR 212 (240)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666555555444
No 181
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.70 E-value=1.1e+02 Score=34.85 Aligned_cols=147 Identities=21% Similarity=0.270 Sum_probs=98.2
Q ss_pred HHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHhHh
Q 012561 160 ALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERS--HASLSEDLGKAQEELQSANQRIAS 237 (461)
Q Consensus 160 ~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~--~~~LseeL~k~q~E~~~anqqi~s 237 (461)
.|+.+.+||.+-+.-+|..++.++|-|.+-.+--.-..++ +-|+|.-+--|++ -+.+.-.+-+++.|++...+-++.
T Consensus 47 ~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~-g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~ 125 (772)
T KOG0999|consen 47 DLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARD-GEEREESLLQESAAKEEYYLQKILELENELKQLRQELTN 125 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777777777777776655432222111 1222222211111 133445566777888888888887
Q ss_pred HHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHH
Q 012561 238 INDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDE 307 (461)
Q Consensus 238 lqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~E 307 (461)
++.-+.||-.-|.-+=--|+.+-.+--.....++..----+.++---|.|-..+.|||.|.+..|.||-|
T Consensus 126 ~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVE 195 (772)
T KOG0999|consen 126 VQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVE 195 (772)
T ss_pred HHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhh
Confidence 7777777777777777777777777667777777766666778888888888999999999999998865
No 182
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=80.66 E-value=93 Score=34.00 Aligned_cols=54 Identities=24% Similarity=0.336 Sum_probs=36.3
Q ss_pred HHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhH
Q 012561 183 QEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIA 236 (461)
Q Consensus 183 qe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~ 236 (461)
++.+...|+|.-+|-.-+.+=++.+..++.-.+.+..++-|++.++.+...|..
T Consensus 94 ~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q 147 (499)
T COG4372 94 QGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQ 147 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555565666666666777777777777777778888777777766654
No 183
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.86 E-value=1.3e+02 Score=35.04 Aligned_cols=48 Identities=8% Similarity=-0.076 Sum_probs=29.6
Q ss_pred hhhhhhhhHHhHHHHHHHHHhHHHHhhhhhhhHHhHHhhhhhhhhhcccceeeee
Q 012561 392 ALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILELEVNLSSSAL 446 (461)
Q Consensus 392 a~etrte~E~Qk~~i~eLq~RLadaE~kiiEGEkLRKKLHNTILELKGNIRv~cr 446 (461)
..+.+..|......+.+++..+. -+..+..-+.+|..| +.|+=.-+|.
T Consensus 461 l~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~r~~l------~~~~~cplcg 508 (1042)
T TIGR00618 461 LQESAQSLKEREQQLQTKEQIHL-QETRKKAVVLARLLE------LQEEPCPLCG 508 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhc------CCCCCCCCCC
Confidence 34455666666667777766664 344566666666654 5677666664
No 184
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=79.64 E-value=45 Score=34.91 Aligned_cols=104 Identities=17% Similarity=0.275 Sum_probs=58.9
Q ss_pred CChHHhhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHH
Q 012561 106 FNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEK 185 (461)
Q Consensus 106 fdyKgr~EqM~dyIKrLr~CIrWfqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~ 185 (461)
=||..+.|||..|.+.+.... .-.++.|+.........=-.+.+.+--+|.-++.|...|.+++.+
T Consensus 216 kDWR~hleqm~~~~~~I~~~~--------------~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ 281 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESAL--------------PETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDE 281 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhh--------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 388888888888887776543 223334444444444444445555566666666666667777666
Q ss_pred HhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 012561 186 LAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQS 230 (461)
Q Consensus 186 L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~ 230 (461)
|+..+.. |.---+.-.......+.++++|++++.++..
T Consensus 282 ls~~~~~-------y~~~s~~V~~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 282 LSEVQEK-------YKQASEGVSERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHHHHHH-------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6654322 1111112222334456677888887777653
No 185
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=79.55 E-value=96 Score=33.52 Aligned_cols=29 Identities=14% Similarity=0.310 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhchhhhhhhh
Q 012561 369 NQIRSLSDQLAAAEEKLEVSDLSALETKT 397 (461)
Q Consensus 369 eqI~~Lq~QLa~A~eKLk~aDlsa~etrt 397 (461)
..|..|+.++..+..++.-.-...+..|.
T Consensus 346 ~~le~L~~el~~l~~~l~~~a~~Ls~~R~ 374 (563)
T TIGR00634 346 ESLEALEEEVDKLEEELDKAAVALSLIRR 374 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777888888777777665444444443
No 186
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=79.49 E-value=53 Score=30.48 Aligned_cols=112 Identities=20% Similarity=0.219 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 012561 167 ELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQ 246 (461)
Q Consensus 167 EL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQ 246 (461)
+..+--.-|...+-+|+-.|.-.+..+..++.-.+--+......+.-...++.+|..+..|+.++...-..|.-+-.-.|
T Consensus 14 ~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q 93 (140)
T PF10473_consen 14 ESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQ 93 (140)
T ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455666777777777777777777776666655555566666667777777777777777776666666666666
Q ss_pred HHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhh
Q 012561 247 EYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLS 285 (461)
Q Consensus 247 EYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls 285 (461)
+=-..|-..|+.+..- |..++.+|.-|.+++.
T Consensus 94 ~kv~eLE~~~~~~~~~-------l~~~E~ek~q~~e~~~ 125 (140)
T PF10473_consen 94 EKVSELESLNSSLENL-------LQEKEQEKVQLKEESK 125 (140)
T ss_pred HHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 6677777777765543 4444555666665543
No 187
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=79.25 E-value=1.5e+02 Score=35.66 Aligned_cols=27 Identities=15% Similarity=0.384 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhchhhhh
Q 012561 368 SNQIRSLSDQLAAAEEKLEVSDLSALE 394 (461)
Q Consensus 368 ~eqI~~Lq~QLa~A~eKLk~aDlsa~e 394 (461)
+++++.||..-..-....-+..+..++
T Consensus 964 re~l~~Lq~k~~~l~k~vn~~~m~mle 990 (1174)
T KOG0933|consen 964 REELKKLQEKKEKLEKTVNPKNMDMLE 990 (1174)
T ss_pred HHHHHHhhHHHHHHHhhcCHHHHHHHH
Confidence 566666666665555555444444443
No 188
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=79.07 E-value=62 Score=33.45 Aligned_cols=113 Identities=17% Similarity=0.238 Sum_probs=61.3
Q ss_pred HHHHHhhh------hhHHHHHHHHHHHH-HHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHH---hhHHHH
Q 012561 127 KWFQELEG------DYAFEHERLRNALE-LSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEE---SDKLAA 196 (461)
Q Consensus 127 rWfqelE~------~y~~EqekL~~~Le-~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~kee---seKl~a 196 (461)
-|||..|. .|.-..+.+...|. +..-........++..+.+.+..|.+|++.+.+|+..+.+-. .++-..
T Consensus 38 ~~yQ~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~ 117 (301)
T PF06120_consen 38 YFYQNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGIT 117 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 35666554 35555555555553 344555666777888888888888888888888888875322 222111
Q ss_pred HHhhHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHH
Q 012561 197 LDSLAR-EKETRLNMERSHASLSEDLGKAQEELQSANQRIASIN 239 (461)
Q Consensus 197 ~~s~~k-EkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slq 239 (461)
..-+.. .-..-..+-.-.+.++.+|.+.+..+..+-.++...+
T Consensus 118 ~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q 161 (301)
T PF06120_consen 118 ENGYIINHLMSQADATRKLAEATRELAVAQERLEQMQSKASETQ 161 (301)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 0111223344445555555555555555544444444
No 189
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=78.85 E-value=59 Score=30.66 Aligned_cols=71 Identities=15% Similarity=0.186 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhh
Q 012561 314 ALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSAL 393 (461)
Q Consensus 314 ~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~ 393 (461)
.-++|...+=+=+..|=..||+...+.+.+..++.+=++ + |+.++..|+.++..++-...
T Consensus 99 e~Lkey~~y~~svk~~l~~R~~~q~~~e~~~e~L~~k~~---------~-----------l~~ev~~a~~~~e~~~~~~~ 158 (200)
T cd07624 99 PPLREYLLYSDAVKDVLKRRDQFQIEYELSVEELNKKRL---------E-----------LLKEVEKLQDKLECANADLK 158 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------H-----------HHHHHHHHHHHHHHHHHHHH
Confidence 344555555566667788999999999999988887665 1 55666666666666655555
Q ss_pred hhhhhhHHhHH
Q 012561 394 ETKTEFEGQKK 404 (461)
Q Consensus 394 etrte~E~Qk~ 404 (461)
....-|+.+|.
T Consensus 159 ~E~~rF~~~K~ 169 (200)
T cd07624 159 ADLERWKQNKR 169 (200)
T ss_pred HHHHHHHHHHH
Confidence 55556665553
No 190
>PLN02939 transferase, transferring glycosyl groups
Probab=78.84 E-value=1.5e+02 Score=35.31 Aligned_cols=136 Identities=28% Similarity=0.319 Sum_probs=74.6
Q ss_pred HHHhhHHHHHHhhHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhh------hhh
Q 012561 188 KEESDKLAALDSLAREKETRL-NMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNT------KLQ 260 (461)
Q Consensus 188 keeseKl~a~~s~~kEkEaR~-~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNS------kLQ 260 (461)
|...+=+.+--+.-+|-+.|+ ..|+.++.|..-|..+..-+..+ -.|+.|. .+|| |-+ +||
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-----~~~~-~~~~~~~~~~~~ 306 (977)
T PLN02939 239 KDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVA------QEDVSKL-----SPLQ-YDCWWEKVENLQ 306 (977)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh------hhhhhhc-----cchh-HHHHHHHHHHHH
Confidence 333333333344444444443 34666666655554444443322 2333332 1221 222 444
Q ss_pred ccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHH-H-hhhhhhhhhhHH
Q 012561 261 KDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVE-L-QQVRDDRDHQLS 338 (461)
Q Consensus 261 aDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~E-L-qqvRdDRDr~~~ 338 (461)
.=|+.+ ..|-|++++| =+++.-|+++.+...+|..||---|-. +--.| | |+|.--++|..+
T Consensus 307 ~~~~~~-----~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 369 (977)
T PLN02939 307 DLLDRA-----TNQVEKAALV------LDQNQDLRDKVDKLEASLKEANVSKFS------SYKVELLQQKLKLLEERLQA 369 (977)
T ss_pred HHHHHH-----HHHHHHHHHH------hccchHHHHHHHHHHHHHHHhhHhhhh------HHHHHHHHHHHHHHHHHHHh
Confidence 444443 2345666665 457888999999999999998765542 22224 2 456666677766
Q ss_pred HHHHHHHHHHHhHH
Q 012561 339 QVQALTAEVIKHKE 352 (461)
Q Consensus 339 QvqsL~aE~~~ykE 352 (461)
-.+.+.+.+.-|.+
T Consensus 370 ~~~~~~~~~~~~~~ 383 (977)
T PLN02939 370 SDHEIHSYIQLYQE 383 (977)
T ss_pred hHHHHHHHHHHHHH
Confidence 67777777777777
No 191
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=78.84 E-value=79 Score=32.10 Aligned_cols=197 Identities=18% Similarity=0.246 Sum_probs=110.9
Q ss_pred HHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHH-------HhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHH
Q 012561 150 SEQKCAEMELALRNKEEELNLIIVELRKSFASLQEK-------LAKEESDKLAALDSLAREKETRLNMERSHASLSEDLG 222 (461)
Q Consensus 150 ~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~-------L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~ 222 (461)
...+|+++-.. ..-+.-+...+.+|...+...++. |..|+++--..-.-|+. |......-+.|..++.
T Consensus 60 l~~~~~~i~~~-~~gi~~l~~~~~~L~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~G~----~~~S~~~~~~l~~~~~ 134 (337)
T cd09234 60 LVERCAALSVR-PDTIKNLVEAMGELSDVYQDVEAMLNEIESLLEEEELQEKEFQEAVGK----RGSSIAHVTELKRELK 134 (337)
T ss_pred HHHHHHHHhcC-CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCC----CCCchhhHHHHHHHHH
Confidence 34555554431 123344444445554444444444 44444433332223331 2222233556888888
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhh------------hhh---------ccHHHHHHHHhhhhhHHHHHH
Q 012561 223 KAQEELQSANQRIASINDMYKLLQEYNSSLQHYNT------------KLQ---------KDIDAAHESIKRGEKEKSAIV 281 (461)
Q Consensus 223 k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNS------------kLQ---------aDl~~~~e~~~r~eKEK~tiv 281 (461)
+.+.-+..|.. |-.-+.+++..+=..|.-+.+ ++- ..|...-..+..+.+++..++
T Consensus 135 k~~~~L~~A~~---sD~~l~~~~~~~~~~l~lL~~~~~~l~~~iPs~~~~~~~~~~~~v~~Lr~ll~kl~~lk~eR~~l~ 211 (337)
T cd09234 135 KYKEAHEKASQ---SNTELHKAMNLHIANLKLLAGPLDELQKKLPSPSLLDRPEDEAIEKELKRILNKVNEMRKQRRSLE 211 (337)
T ss_pred HHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHcCcHHHHHhhCCCccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887777765 555555555554444444321 121 112223344555666777666
Q ss_pred Hhh--------------h------------hhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhh
Q 012561 282 ENL--------------S------------TLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDH 335 (461)
Q Consensus 282 Enl--------------s------------~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr 335 (461)
+.| . .| +.|..+++++......|+.-+++-..+.......|....-....|.
T Consensus 212 ~~Lk~k~~~DDI~~~ll~~~~~~~e~lf~~eL-~k~~~~~~~l~~~~~~Q~~ll~~i~~an~~f~~~r~~~~~~~~~Re- 289 (337)
T cd09234 212 QQLRDAIHEDDITSKLVTTTGGDMEDLFKEEL-KKHDQLVNLIEQNLAAQENILKALTEANAKYAPVRKALSETKQKRE- 289 (337)
T ss_pred HHHHHHhhcCCchHHHHHhcchhHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-
Confidence 665 1 22 3588889999999999999888888888877766666544444444
Q ss_pred hHHHHHHHHHHHHHhHHhhhhhh
Q 012561 336 QLSQVQALTAEVIKHKELAVSSE 358 (461)
Q Consensus 336 ~~~QvqsL~aE~~~ykEl~~k~~ 358 (461)
..++.|..=...|+||..++.
T Consensus 290 --~~l~~L~~ay~~y~el~~~l~ 310 (337)
T cd09234 290 --STISSLIASYEAYEDLLKKSQ 310 (337)
T ss_pred --HHHHHHHHHHHHHHHHHHhHH
Confidence 456677777788888665553
No 192
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=78.58 E-value=14 Score=35.25 Aligned_cols=69 Identities=22% Similarity=0.348 Sum_probs=57.0
Q ss_pred hHhHHHHHHHHHHHHh------HHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHh
Q 012561 235 IASINDMYKLLQEYNS------SLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKA 303 (461)
Q Consensus 235 i~slqDmyKRLQEYNT------SLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~ska 303 (461)
.-+++|+-.=||-|+. .|+..|..|+..+......++.|++|...+...++++..-|.+|-.-++-++-
T Consensus 79 ~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARk 153 (161)
T TIGR02894 79 SLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARK 153 (161)
T ss_pred cCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557888888888875 36778888888888888899999999999999999999999998888877663
No 193
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=78.42 E-value=72 Score=31.38 Aligned_cols=11 Identities=27% Similarity=0.441 Sum_probs=6.1
Q ss_pred hhhhhhHHHHH
Q 012561 353 LAVSSEDLEAR 363 (461)
Q Consensus 353 l~~k~~~LEet 363 (461)
|..+++.||+.
T Consensus 177 LR~e~s~LEeq 187 (193)
T PF14662_consen 177 LRLEKSRLEEQ 187 (193)
T ss_pred HHHHHHHHHHH
Confidence 55555555553
No 194
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=77.97 E-value=1.7e+02 Score=35.36 Aligned_cols=199 Identities=17% Similarity=0.252 Sum_probs=106.1
Q ss_pred ccHHHHHHHHhhhhhc---cCCCC--hHHhhHhHH--HHHHHHHHHHHHHHHhhhhhHHHHHHH--HHHHHHHHhhHHHH
Q 012561 87 FTREDVEALLSEKMRY---KNKFN--YKERCENMM--DYIKRLRLCIKWFQELEGDYAFEHERL--RNALELSEQKCAEM 157 (461)
Q Consensus 87 FtredVeALLnEKmk~---k~Kfd--yKgr~EqM~--dyIKrLr~CIrWfqelE~~y~~EqekL--~~~Le~~ek~~~e~ 157 (461)
.||.||=.||--- | .|.|. -.||+-.|. .=+-||.+ +.++=+.-+.|.-+- ..-|+.+.++...|
T Consensus 116 Vtk~evvnLLESA--GFSrsNPYyIV~QGkI~~La~akD~eRL~L----LkeVaGtrvYeerreeSlkim~ET~qK~ekI 189 (1200)
T KOG0964|consen 116 VTKGEVVNLLESA--GFSRSNPYYIVPQGKINELANAKDSERLEL----LKEVAGTRVYEERREESLKIMEETKQKREKI 189 (1200)
T ss_pred ccHHHHHHHHHhc--CcccCCCceEeechhhHHhhcCCcHHHHHH----HHHhcccchhHHhHHHHHHHHHHHhhhHHHH
Confidence 5788888888643 4 23332 246665553 22344432 455555555553221 11223333322222
Q ss_pred HHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHH----HHHHHhhhHHHHHHHHHHH-----
Q 012561 158 ELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLN----MERSHASLSEDLGKAQEEL----- 228 (461)
Q Consensus 158 E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~----~E~~~~~LseeL~k~q~E~----- 228 (461)
... +--++++|.--|.||-++-.....+++-|.- ..+.......+|+++....
T Consensus 190 ~el------------------l~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e 251 (1200)
T KOG0964|consen 190 NEL------------------LKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPE 251 (1200)
T ss_pred HHH------------------HHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccch
Confidence 211 2235566666677777766666666655431 2233344444444444433
Q ss_pred ------HHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhH
Q 012561 229 ------QSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYK 302 (461)
Q Consensus 229 ------~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~sk 302 (461)
.++++...+..|+-.-+-|-+++|+--+- |... ++-+-+.|+....+|.=..++||+|++..+
T Consensus 252 ~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~----ekeq-------~~a~~t~~~k~kt~lel~~kdlq~~i~~n~ 320 (1200)
T KOG0964|consen 252 ESEQYIDALDKVEDESEDLKCEIKELENKLTNLRE----EKEQ-------LKARETKISKKKTKLELKIKDLQDQITGNE 320 (1200)
T ss_pred hhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHH-------HHHHHHHHHHHhhhhhhhhHHHHHHhhhhh
Confidence 33444455556666666677777764322 2222 334455677777888888999999999887
Q ss_pred hhHHHHHHhhHHHHHHHH
Q 012561 303 ASQDEAMRQKDALVHEVA 320 (461)
Q Consensus 303 aSq~Ea~kQK~~L~~Ev~ 320 (461)
-+-+.++.+...+..++.
T Consensus 321 q~r~~~l~~l~~~~~ki~ 338 (1200)
T KOG0964|consen 321 QQRNLALHVLQKVKDKIE 338 (1200)
T ss_pred hhhhhHHHHHHHHHHHHH
Confidence 776666655544444333
No 195
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=77.92 E-value=16 Score=33.26 Aligned_cols=95 Identities=18% Similarity=0.308 Sum_probs=73.3
Q ss_pred hhhccHH-HHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhH--HHHHHhhHHHHHHHHHHHHHHhhhhhhhh
Q 012561 258 KLQKDID-AAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQ--DEAMRQKDALVHEVASMRVELQQVRDDRD 334 (461)
Q Consensus 258 kLQaDl~-~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq--~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRD 334 (461)
-.|.+++ ...+.+..+..+-..+.+.+..|+..+++|..+|+...++. ++...+...|..|+..|...|+..|....
T Consensus 61 ~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~ 140 (169)
T PF07106_consen 61 ANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSK 140 (169)
T ss_pred eCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3455555 34567888888889999999999999999999999888876 78888999999999999999999887555
Q ss_pred h-hHHHHHHHHHHHHHhHH
Q 012561 335 H-QLSQVQALTAEVIKHKE 352 (461)
Q Consensus 335 r-~~~QvqsL~aE~~~ykE 352 (461)
. .-.+++.+..+..+|..
T Consensus 141 ~vs~ee~~~~~~~~~~~~k 159 (169)
T PF07106_consen 141 PVSPEEKEKLEKEYKKWRK 159 (169)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 4 22345555555555544
No 196
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=77.64 E-value=1.7e+02 Score=35.26 Aligned_cols=89 Identities=20% Similarity=0.245 Sum_probs=58.3
Q ss_pred hhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhH--HHHHHh----------hHHHHHHHHHH
Q 012561 255 YNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQ--DEAMRQ----------KDALVHEVASM 322 (461)
Q Consensus 255 YNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq--~Ea~kQ----------K~~L~~Ev~~L 322 (461)
-|-.|=.+|-...+.+..+..+...+-..+..++-..+.+++|+...+-|. .+.+.+ -+.|.++++.+
T Consensus 266 ~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~S~~Lg~~L~~Q~~~LP~~~~~~~l~~~IAdl 345 (1109)
T PRK10929 266 INRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLGVSNALGEALRAQVARLPEMPKPQQLDTEMAQL 345 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhCCCCcccchhHHHHHHH
Confidence 366666666666666666767776666666677777777777776665442 222222 24578999999
Q ss_pred HHHHhhhhhhhhhhHHHHHHHH
Q 012561 323 RVELQQVRDDRDHQLSQVQALT 344 (461)
Q Consensus 323 R~ELqqvRdDRDr~~~QvqsL~ 344 (461)
|.+.=++-+-||... ++..+.
T Consensus 346 Rl~~f~~~q~~~~l~-~i~~~~ 366 (1109)
T PRK10929 346 RVQRLRYEDLLNKQP-QLRQIR 366 (1109)
T ss_pred HHHHHHHHHHHHHhh-hhHHHH
Confidence 998888888888743 354444
No 197
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=77.33 E-value=91 Score=36.39 Aligned_cols=122 Identities=23% Similarity=0.334 Sum_probs=81.7
Q ss_pred hhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhh---hhhhHHH-HHHHHHHHHHhHHhhhhhhH
Q 012561 284 LSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDD---RDHQLSQ-VQALTAEVIKHKELAVSSED 359 (461)
Q Consensus 284 ls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdD---RDr~~~Q-vqsL~aE~~~ykEl~~k~~~ 359 (461)
|-.|+-.+.+||.||.-+.-+|+---..-+.|.+.++++|.|=+++++. .|..+-+ -+-+..|..+.|= +
T Consensus 429 l~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~------e 502 (861)
T PF15254_consen 429 LFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKI------E 502 (861)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH------H
Confidence 4568888999999999988888776666788999999999998888764 5554433 2334455555543 2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHH
Q 012561 360 LEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLED 415 (461)
Q Consensus 360 LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLad 415 (461)
+|+.-. ..+.++-.|++|+.-=++-.++.-..-.|.+--+.+...||.-.+-
T Consensus 503 v~eal~----~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~ 554 (861)
T PF15254_consen 503 VEEALV----NVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAK 554 (861)
T ss_pred HHHHHH----HHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333222 4566777777776666666666666666666666666666665543
No 198
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=77.33 E-value=29 Score=38.24 Aligned_cols=92 Identities=15% Similarity=0.307 Sum_probs=51.1
Q ss_pred hHHHhhhhhhhccHHHHHHH--HhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHh
Q 012561 250 SSLQHYNTKLQKDIDAAHES--IKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQ 327 (461)
Q Consensus 250 TSLQQYNSkLQaDl~~~~e~--~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELq 327 (461)
+.|+.|.+.||..+...... .+-+..-=.+|+.+++.+-+....|+.+. ...-...+++-..|..++..|=..+-
T Consensus 111 ~~L~~ff~s~q~la~~P~~~a~r~~vl~~a~~l~~~in~~~~~L~~l~~~i---~~~I~~~V~~vNsLl~qIa~lN~qI~ 187 (552)
T COG1256 111 TLLNDFFNSLQELASNPSDTAARQAVLSKAQTLVNQINNTYEQLTDLRKDI---NAEIAATVDEVNSLLKQIADLNKQIR 187 (552)
T ss_pred HHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555544433222 22222233456666666555444444333 34444466666677777777766666
Q ss_pred hh----------hhhhhhhHHHHHHHH
Q 012561 328 QV----------RDDRDHQLSQVQALT 344 (461)
Q Consensus 328 qv----------RdDRDr~~~QvqsL~ 344 (461)
.+ +|.||+.+.++..+-
T Consensus 188 ~~~~~g~~~NdLlDqRD~Lv~eLs~~i 214 (552)
T COG1256 188 KVKAAGNDPNDLLDQRDQLVDELSQLI 214 (552)
T ss_pred HhccCCCCchhHHHHHHHHHHHHHhhc
Confidence 65 688888887776553
No 199
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=76.48 E-value=34 Score=32.49 Aligned_cols=73 Identities=18% Similarity=0.354 Sum_probs=36.0
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHH------HHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 012561 277 KSAIVENLSTLRGQYISLQEQLSTYKASQDEA------MRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKH 350 (461)
Q Consensus 277 K~tivEnls~LrG~~~SLq~QL~~skaSq~Ea------~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~y 350 (461)
-..+...+..++.....|+..|..++....+- +...+.|..++..|+.||+..++ .--..++.+..++..+
T Consensus 71 ~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~---~Dp~~i~~~~~~~~~~ 147 (188)
T PF03962_consen 71 LEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSE---NDPEKIEKLKEEIKIA 147 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHH
Confidence 33344444444444555555555555444333 44444555555555555552222 2224566666666666
Q ss_pred HH
Q 012561 351 KE 352 (461)
Q Consensus 351 kE 352 (461)
++
T Consensus 148 ~~ 149 (188)
T PF03962_consen 148 KE 149 (188)
T ss_pred HH
Confidence 66
No 200
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=76.18 E-value=69 Score=31.71 Aligned_cols=84 Identities=20% Similarity=0.309 Sum_probs=47.9
Q ss_pred HHHHHhhhhhHHHHHHHhhhhhhhhhhhHH------HHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q 012561 266 AHESIKRGEKEKSAIVENLSTLRGQYISLQ------EQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQ 339 (461)
Q Consensus 266 ~~e~~~r~eKEK~tivEnls~LrG~~~SLq------~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~Q 339 (461)
.+.-...++|=|+.|...+..+++....|+ ++|..-|.+--|.++|-.. ++.-|=..+.|.+.+|++....
T Consensus 6 ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~---DIn~lE~iIkqa~~er~~~~~~ 82 (230)
T PF10146_consen 6 IRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQ---DINTLENIIKQAESERNKRQEK 82 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677888888888888777554443 3444444444444444332 2233444455555666665556
Q ss_pred HHHHHHHHHHhHH
Q 012561 340 VQALTAEVIKHKE 352 (461)
Q Consensus 340 vqsL~aE~~~ykE 352 (461)
++-+..|+...|+
T Consensus 83 i~r~~eey~~Lk~ 95 (230)
T PF10146_consen 83 IQRLYEEYKPLKD 95 (230)
T ss_pred HHHHHHHHHHHHH
Confidence 6666655555555
No 201
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=75.75 E-value=71 Score=29.97 Aligned_cols=157 Identities=18% Similarity=0.221 Sum_probs=72.6
Q ss_pred HHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhH-----HH
Q 012561 233 QRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQ-----DE 307 (461)
Q Consensus 233 qqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq-----~E 307 (461)
.-+..++|-.+.|.-|..-++.==.++...+..+....++++++-...-..+..+.+ +...+-..- .+
T Consensus 16 ~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~-------~A~~Al~~g~edLAr~ 88 (221)
T PF04012_consen 16 ELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEK-------QAELALAAGREDLARE 88 (221)
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHcCCHHHHHH
Confidence 333444444444444433333322333344444444455555555544444444333 333332222 23
Q ss_pred HHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhh
Q 012561 308 AMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEV 387 (461)
Q Consensus 308 a~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~ 387 (461)
|+..|..+...+..|...+.+....=+..-.++..|...+..++. +..+|.-+..+|+-..+|
T Consensus 89 al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~-----------------k~~~l~ar~~~a~a~~~~ 151 (221)
T PF04012_consen 89 ALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKS-----------------KREELKARENAAKAQKKV 151 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHH
Confidence 455555566666665555555544444444444444443333333 333444444444444444
Q ss_pred hc----hhhhhhhhhhHHhHHHHHHHHHhH
Q 012561 388 SD----LSALETKTEFEGQKKLINELRNHL 413 (461)
Q Consensus 388 aD----lsa~etrte~E~Qk~~i~eLq~RL 413 (461)
.+ ++....+..|+.-...|..++-+.
T Consensus 152 ~~~~~~~~~~~a~~~~er~e~ki~~~ea~a 181 (221)
T PF04012_consen 152 NEALASFSVSSAMDSFERMEEKIEEMEARA 181 (221)
T ss_pred HHHhccCCccchHHHHHHHHHHHHHHHHHH
Confidence 33 345566667776666666655543
No 202
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=75.67 E-value=28 Score=28.85 Aligned_cols=66 Identities=18% Similarity=0.280 Sum_probs=46.2
Q ss_pred HHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Q 012561 268 ESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEV 347 (461)
Q Consensus 268 e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~ 347 (461)
+.+.+++.-=.+.|+++..|+..+..|+.+-+.. ..|-..|+.|.++.+++|.....-+.+|.+-+
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L--------------~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNEL--------------KEENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455566666677777777777666666554333 36777788888888888888888888876654
No 203
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=75.43 E-value=1.1e+02 Score=31.94 Aligned_cols=41 Identities=17% Similarity=0.261 Sum_probs=23.5
Q ss_pred ccccHHHHHHHHhhhhhccCCCChHHhhHhHHHHHHHHHHHHHHHHH
Q 012561 85 IEFTREDVEALLSEKMRYKNKFNYKERCENMMDYIKRLRLCIKWFQE 131 (461)
Q Consensus 85 ieFtredVeALLnEKmk~k~KfdyKgr~EqM~dyIKrLr~CIrWfqe 131 (461)
...|.+++++-|++=+=. -.|..||.-.-.-+.+-.+-+-+
T Consensus 33 ~~ls~~~~~~~l~y~~Lc------~~rv~qmtkty~Didavt~lLeE 73 (306)
T PF04849_consen 33 PELSPEQIEETLRYFLLC------SDRVSQMTKTYNDIDAVTRLLEE 73 (306)
T ss_pred CCCCHHHHHHHHHHHHhc------ccchhhhhcchhhHHHHHHHHHH
Confidence 336888888887764222 23556666554555555554444
No 204
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=75.36 E-value=1.5e+02 Score=33.74 Aligned_cols=72 Identities=13% Similarity=0.250 Sum_probs=30.5
Q ss_pred HHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHH-HhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Q 012561 266 AHESIKRGEKEKSAIVENLSTLRGQYISLQEQLS-TYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQ 341 (461)
Q Consensus 266 ~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~-~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~Qvq 341 (461)
.+|.+++...-...|+.-+..|....+ .++- .+.|- .+-.+..+.+...+..|+.-|.+++.--++|-.|++
T Consensus 598 LaeR~e~a~d~Qe~L~~R~~~vl~~l~---~~~P~LS~AE-r~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~ 670 (717)
T PF10168_consen 598 LAERYEEAKDKQEKLMKRVDRVLQLLN---SQLPVLSEAE-REFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIE 670 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444455554544444221 1211 22222 222333344444455555555555555444444433
No 205
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=75.02 E-value=65 Score=33.52 Aligned_cols=62 Identities=26% Similarity=0.320 Sum_probs=49.8
Q ss_pred hhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHh
Q 012561 259 LQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQ 327 (461)
Q Consensus 259 LQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELq 327 (461)
|+.+.....|.+..++|-+.-|.--|..=-++++.|.-||.++|. |-+.|.-|+..++.||.
T Consensus 65 LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kk-------qie~Leqelkr~KsELE 126 (307)
T PF10481_consen 65 LKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKK-------QIEKLEQELKRCKSELE 126 (307)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 444555557788888888888888888888889999999999886 67778888888888886
No 206
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=74.94 E-value=54 Score=31.34 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=13.4
Q ss_pred hhhhhhhhhHHhHHHHHHHHH
Q 012561 391 SALETKTEFEGQKKLINELRN 411 (461)
Q Consensus 391 sa~etrte~E~Qk~~i~eLq~ 411 (461)
+...++..|+.-+..|..+.-
T Consensus 160 ~~~~a~~~fer~e~ki~~~ea 180 (219)
T TIGR02977 160 RSDEAMARFEQYERRVDELEA 180 (219)
T ss_pred CchhHHHHHHHHHHHHHHHHH
Confidence 445666677777666666653
No 207
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.82 E-value=1.1e+02 Score=31.58 Aligned_cols=70 Identities=19% Similarity=0.190 Sum_probs=49.9
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHH
Q 012561 226 EELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQ 295 (461)
Q Consensus 226 ~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq 295 (461)
+-+..+-.++..+.+.++.|-+|.-.|++|||++-+......+...+++.-=..+.-.-..+|+...++.
T Consensus 33 ~~l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e 102 (297)
T KOG0810|consen 33 SNLEEFFEDVEEIRDDIEKLDEDVEKLQKLHSKSLHSPNADKELKRKLESLVDEIRRRARKIKTKLKALE 102 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467788889999999999999999999999888777766666666665555555555555555444333
No 208
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=74.72 E-value=52 Score=35.96 Aligned_cols=28 Identities=14% Similarity=0.228 Sum_probs=16.4
Q ss_pred HHHHHHHhHHHHhhhhhhhHHhHHhhhh
Q 012561 405 LINELRNHLEDAEYKLIEGEKLRKRLHN 432 (461)
Q Consensus 405 ~i~eLq~RLadaE~kiiEGEkLRKKLHN 432 (461)
++.=|++.|..-+.+|-+-++=+.+=|.
T Consensus 141 ll~Pl~e~l~~f~~~v~~~~~~~~~~~~ 168 (475)
T PRK10361 141 LLSPLREQLDGFRRQVQDSFGKEAQERH 168 (475)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666665555555553
No 209
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=74.69 E-value=98 Score=31.10 Aligned_cols=142 Identities=18% Similarity=0.214 Sum_probs=79.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhh---------------------hhhccHHHHHH
Q 012561 210 MERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNT---------------------KLQKDIDAAHE 268 (461)
Q Consensus 210 ~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNS---------------------kLQaDl~~~~e 268 (461)
-...-..|.+++.+.+.-+..|..- -..+..++..+-..|+-+.+ ..=.++...-+
T Consensus 124 S~~~~~~l~~~~~k~~~~L~~A~~s---D~~l~~~~~~~~~~l~lL~~~~~~l~~~~Ps~~~~~~~~~~~~v~~Lr~~l~ 200 (342)
T cd08915 124 SDEAAKELYEKVTKLRGYLEQASNS---DNEVLQCYESIDPNLVLLCGGYKELKAFIPSPYPALDPEVSEVVSSLRPLLN 200 (342)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHhcCChHHHHHhCCCccccCCchhhHHHHHHHHHHH
Confidence 3445567888888888877777543 33333444433333333322 11112333344
Q ss_pred HHhhhhhHHHHHHHhh--------------hhhhh---------------hhhhHHHHHHHhHhhHHHHHHhhHHHHHHH
Q 012561 269 SIKRGEKEKSAIVENL--------------STLRG---------------QYISLQEQLSTYKASQDEAMRQKDALVHEV 319 (461)
Q Consensus 269 ~~~r~eKEK~tivEnl--------------s~LrG---------------~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev 319 (461)
.+..+.+++..+++.| .+.+. .|..++.++..+...|+.-+++-.....+.
T Consensus 201 ~l~~lk~eR~~~~~~lk~~~~~ddI~~~ll~~~~~~~~~~~e~lf~~eL~kf~~~~~~i~~~~~~Q~~ll~~i~~~~~~f 280 (342)
T cd08915 201 EVSELEKERERFISELEIKSRNNDILPKLITEYKKNGTTEFEDLFEEHLKKFDKDLTYVEKTKKKQIELIKEIDAANQEF 280 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCcHHHHHHhhccccchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555577777666665 22221 366677777777777777777777766666
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhh
Q 012561 320 ASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSE 358 (461)
Q Consensus 320 ~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~ 358 (461)
...|.- ....+.|.. .++.|..=...|.|+...+.
T Consensus 281 ~~~~~~-~~~~~~r~~---~l~~L~~ay~~y~el~~~l~ 315 (342)
T cd08915 281 SQVKNS-NDSLDPREE---ALQDLEASYKKYLELKENLN 315 (342)
T ss_pred HHHhcc-chhhhHHHH---HHHHHHHHHHHHHHHHHhHH
Confidence 655543 333334444 35566666677777544443
No 210
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=74.60 E-value=92 Score=30.72 Aligned_cols=177 Identities=19% Similarity=0.257 Sum_probs=109.3
Q ss_pred HHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhH-----
Q 012561 231 ANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQ----- 305 (461)
Q Consensus 231 anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq----- 305 (461)
+|.-|..+.|-. -.|+||=...+.++-.+..++.++-..+...---+..+.-....++.+=-.+..--
T Consensus 15 ~~~~~dk~EDp~-------~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LA 87 (225)
T COG1842 15 INELLDKAEDPE-------KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLA 87 (225)
T ss_pred HHHHHHhhcCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 344444445544 34555555666666666666555555555554445555444444444433332222
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHH--HHHHh
Q 012561 306 DEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQL--AAAEE 383 (461)
Q Consensus 306 ~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QL--a~A~e 383 (461)
.+++-.+..|.+-+..++..++++++-.++.-.++..|...|..++- +..++.... +-|.+
T Consensus 88 r~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~-----------------~~~~l~ar~~~akA~~ 150 (225)
T COG1842 88 REALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRA-----------------KKEALKARKAAAKAQE 150 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHH
Confidence 35677888888899999999999999999888888888887777776 333333322 33344
Q ss_pred hhh--hhchhhhhhhhhhHHhHHHHHHHHHhHHH-HhhhhhhhHHhHHhhh
Q 012561 384 KLE--VSDLSALETKTEFEGQKKLINELRNHLED-AEYKLIEGEKLRKRLH 431 (461)
Q Consensus 384 KLk--~aDlsa~etrte~E~Qk~~i~eLq~RLad-aE~kiiEGEkLRKKLH 431 (461)
++. +..++...++-.|+.....|.+.+.+..- +|.-.-.|+.|.++|-
T Consensus 151 ~v~~~~~~~s~~sa~~~fer~e~kiee~ea~a~~~~el~~~~~~dl~~e~a 201 (225)
T COG1842 151 KVNRSLGGGSSSSAMAAFERMEEKIEEREARAEAAAELAEGSGDDLDKEFA 201 (225)
T ss_pred HHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhHHhhccCcccHHHHHH
Confidence 443 23455568899999999999988876433 3333455666666653
No 211
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=74.15 E-value=2e+02 Score=34.52 Aligned_cols=218 Identities=17% Similarity=0.244 Sum_probs=132.3
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHH------hhHHHHHHHH
Q 012561 135 DYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALD------SLAREKETRL 208 (461)
Q Consensus 135 ~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~------s~~kEkEaR~ 208 (461)
.|.-|...|+......++.|..- .+++.-|..-|..|.+...++-++..+- .|.+.++ -|.+....-.
T Consensus 178 ~~h~eL~~lr~~e~~Le~~~~~~----~~~l~~L~~~~~~l~kdVE~~rer~~~~--~~Ie~l~~k~~~v~y~~~~~ey~ 251 (1072)
T KOG0979|consen 178 QYHIELMDLREDEKSLEDKLTTK----TEKLNRLEDEIDKLEKDVERVRERERKK--SKIELLEKKKKWVEYKKHDREYN 251 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhccccchHhhhHHHH
Confidence 36666777777766666666554 3566778888888888888877765542 2222221 2344444444
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhh
Q 012561 209 NMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLR 288 (461)
Q Consensus 209 ~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~Lr 288 (461)
+.-.....+-+++.++..+.+-++..+..|.+--+-+-.= =|..+.++.++...+. .++|.+....
T Consensus 252 ~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~-------~s~~~~~~~e~~~k~~-------~~~ek~~~~~ 317 (1072)
T KOG0979|consen 252 AYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSK-------ISQKQRELNEALAKVQ-------EKFEKLKEIE 317 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHH-------HHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 5555667777888888888888888888887722111110 1233444444433322 2445555555
Q ss_pred hhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHH
Q 012561 289 GQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQS 368 (461)
Q Consensus 289 G~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~ 368 (461)
.+.-.++.+|.+.+-.-+.-.+--..+.+++..++++||++- +=.+-+.+.+.++.++.-.+. =...|+-|.
T Consensus 318 ~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~-~~e~~~~~~~ei~~~~~~~~~-------~~~~~~~~~ 389 (1072)
T KOG0979|consen 318 DEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQETE-DPENPVEEDQEIMKEVLQKKS-------SKLRDSRQE 389 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC-CccccchhHHHHHHHHHHHHh-------hhhhhhhhh
Confidence 666666666666655444334444455666777888888764 345567788888888766554 134688888
Q ss_pred HHHHHHHHHHHH
Q 012561 369 NQIRSLSDQLAA 380 (461)
Q Consensus 369 eqI~~Lq~QLa~ 380 (461)
..++++..|.-.
T Consensus 390 id~~~~~~~~~~ 401 (1072)
T KOG0979|consen 390 IDAEQLKSQKLR 401 (1072)
T ss_pred hhHHHHHHHHHH
Confidence 888877666543
No 212
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=74.14 E-value=1.2e+02 Score=31.71 Aligned_cols=145 Identities=23% Similarity=0.249 Sum_probs=75.9
Q ss_pred HHHHHhHHHhhhhhhhccHHHHHHHHhhhhhH---HHHHHHhhhhhhh-------hhhh---HHHHHHHhHhhHHHHHHh
Q 012561 245 LQEYNSSLQHYNTKLQKDIDAAHESIKRGEKE---KSAIVENLSTLRG-------QYIS---LQEQLSTYKASQDEAMRQ 311 (461)
Q Consensus 245 LQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKE---K~tivEnls~LrG-------~~~S---Lq~QL~~skaSq~Ea~kQ 311 (461)
|-+=|..|..=|+.|-.++..+.+.+..++-| |..++-..+.-.. .... -...+.++...+-+++++
T Consensus 88 Ll~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~ 167 (306)
T PF04849_consen 88 LLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQE 167 (306)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHH
Confidence 44456666666666666666666666666554 3333332222110 0000 011223344455566665
Q ss_pred hH-HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH-----------HHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHH
Q 012561 312 KD-ALVHEVASMRVELQQVRDDRDHQLSQVQALTAE-----------VIKHKELAVSSEDLEARCASQSNQIRSLSDQLA 379 (461)
Q Consensus 312 K~-~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE-----------~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa 379 (461)
|- .|-.|=..||.|-.+.+.+=+..--+-+-|..+ |+...+ -...--+-|..|+++|-.|.-|++
T Consensus 168 Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~Lse---ELa~k~Ee~~rQQEEIt~Llsqiv 244 (306)
T PF04849_consen 168 KLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSE---ELARKTEENRRQQEEITSLLSQIV 244 (306)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53 366666677777666664333332222222222 222211 112222578899999999999999
Q ss_pred HHHhhhhhhchhh
Q 012561 380 AAEEKLEVSDLSA 392 (461)
Q Consensus 380 ~A~eKLk~aDlsa 392 (461)
-.+.|++.-=+-.
T Consensus 245 dlQ~r~k~~~~En 257 (306)
T PF04849_consen 245 DLQQRCKQLAAEN 257 (306)
T ss_pred HHHHHHHHHhhhH
Confidence 9988887654333
No 213
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=73.97 E-value=1e+02 Score=31.00 Aligned_cols=29 Identities=10% Similarity=0.227 Sum_probs=17.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhHhHH
Q 012561 211 ERSHASLSEDLGKAQEELQSANQRIASIN 239 (461)
Q Consensus 211 E~~~~~LseeL~k~q~E~~~anqqi~slq 239 (461)
.....-+.++|.+++.++..+..++...+
T Consensus 169 ~~a~~fl~~ql~~~~~~l~~ae~~l~~fr 197 (362)
T TIGR01010 169 KDTIAFAENEVKEAEQRLNATKAELLKYQ 197 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666666554443
No 214
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=73.84 E-value=1.8e+02 Score=33.60 Aligned_cols=319 Identities=19% Similarity=0.187 Sum_probs=172.6
Q ss_pred HHhhhhhccCCCChHHhhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH---HHHHHHHHhhHHHHHHHHHc---hHHHH
Q 012561 95 LLSEKMRYKNKFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERL---RNALELSEQKCAEMELALRN---KEEEL 168 (461)
Q Consensus 95 LLnEKmk~k~KfdyKgr~EqM~dyIKrLr~CIrWfqelE~~y~~EqekL---~~~Le~~ek~~~e~E~~lk~---k~eEL 168 (461)
..+..|-++..-+++-..+++.+.--.+|.=|-=|++.+.-+.....++ .+.....++++.-....+.+ ..+.|
T Consensus 240 ~~e~~~l~~~~e~~~~~~~~~~~in~e~~~L~Ssl~e~~~~l~~~~~~~k~t~~~~~~lr~~~~s~~~~~~~~~~~~e~l 319 (698)
T KOG0978|consen 240 VKEYEMLRKEFENNKSQNDLFSSINREMRHLISSLQEHEKLLKEYERELKDTESDNLKLRKQHSSAADSLESKSRDLESL 319 (698)
T ss_pred HHHHHHHHHhHHHhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhhccchhHHHHHH
Confidence 4456677788888888888888888888888888887776665422222 22333344444444444444 23334
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHh---------------hHHHHHHhhHHHHH----HHHHHHHHHhhhHHHHH----HHH
Q 012561 169 NLIIVELRKSFASLQEKLAKEES---------------DKLAALDSLAREKE----TRLNMERSHASLSEDLG----KAQ 225 (461)
Q Consensus 169 ~~~i~ELr~~~~SLqe~L~kees---------------eKl~a~~s~~kEkE----aR~~~E~~~~~LseeL~----k~q 225 (461)
-.-+..+..+.++++.++.-..- +...+-++...+-+ ...-++.....+.++.+ |+.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~k~~di~~~k~el~~~~~~~le~~k~~~ke~~~~~~~ka~ 399 (698)
T KOG0978|consen 320 LDKIQDLISQEAELSKKLRSKLLESAKKLKILLREKDRESQKERDILVAKSELLKTNELRLEMLKSLLKEQRDKLQVKAR 399 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHhCCCHHHHhHHHHHHH
Confidence 44444445555555433322211 11121122211111 23334444555566666 666
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhh--ccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHh
Q 012561 226 EELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQ--KDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKA 303 (461)
Q Consensus 226 ~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQ--aDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~ska 303 (461)
.|..++.|++.-+..+-+.= +..|.-+-.+- .+....-+.+.+..++=.++.--|.+.++-|--+|.|..-.-.
T Consensus 400 ~E~e~l~q~l~~~~k~e~~e----~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~ 475 (698)
T KOG0978|consen 400 AETESLLQRLKALDKEERSE----IRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQ 475 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888877776553320 11122222222 3555666777777777666666677788888888888877666
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHH---HHhhH----HHHHHHHHH
Q 012561 304 SQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEA---RCASQ----SNQIRSLSD 376 (461)
Q Consensus 304 Sq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEe---tCssQ----~eqI~~Lq~ 376 (461)
...++-..--.|..|-........-.|.+++-.-.|+++|.+-+.+..- ++..||+ .|++. ...+.++++
T Consensus 476 el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~---~i~~leeq~~~lt~~~~~l~~el~~~~~ 552 (698)
T KOG0978|consen 476 ELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLEL---KIGKLEEQERGLTSNESKLIKELTTLTQ 552 (698)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhHhhhhhHHHHHHHHH
Confidence 6666554444555555555555555556666555666666555555444 3333333 33332 234444444
Q ss_pred HHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhh
Q 012561 377 QLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKL 420 (461)
Q Consensus 377 QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~ki 420 (461)
-+..-+.+-.=+.-++..-..+.+.--..+++++..+++.+..|
T Consensus 553 ~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~el 596 (698)
T KOG0978|consen 553 SLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELEL 596 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433444444444444555555666666666655443
No 215
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=72.95 E-value=1.4e+02 Score=32.04 Aligned_cols=80 Identities=25% Similarity=0.327 Sum_probs=65.4
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHH
Q 012561 130 QELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLN 209 (461)
Q Consensus 130 qelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~ 209 (461)
..|...|..|..-+..+|..+.-++.-+|.++..-.+=-..-|..|+..+++.+|++. -.||++=|+=-.+
T Consensus 236 e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~---------Yqs~eRaRdi~E~ 306 (395)
T PF10267_consen 236 EKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMA---------YQSYERARDIWEV 306 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---------HHHHHHHhHHHHH
Confidence 3444567777888889999999999999999999888888999999999999999874 5677777777777
Q ss_pred HHHHHhhhH
Q 012561 210 MERSHASLS 218 (461)
Q Consensus 210 ~E~~~~~Ls 218 (461)
+|.-|+-++
T Consensus 307 ~Es~qtRis 315 (395)
T PF10267_consen 307 MESCQTRIS 315 (395)
T ss_pred HHHHHHHHH
Confidence 777776654
No 216
>PLN03188 kinesin-12 family protein; Provisional
Probab=72.62 E-value=1.7 Score=51.57 Aligned_cols=28 Identities=11% Similarity=0.107 Sum_probs=0.0
Q ss_pred hHHhhhhhhhhh----cccceeeeeeccCCCC
Q 012561 426 LRKRLHNTILEL----EVNLSSSALFRRGLKD 453 (461)
Q Consensus 426 LRKKLHNTILEL----KGNIRv~crvrp~l~~ 453 (461)
|+.||+..-.-- .+||||||||||+.++
T Consensus 81 l~rk~~~~~~~en~~~ds~VkV~VRVRPl~~~ 112 (1320)
T PLN03188 81 LKRKLSAETAPENGVSDSGVKVIVRMKPLNKG 112 (1320)
T ss_pred hhccccccccccccCCCCCeEEEEEcCCCCCc
No 217
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=72.25 E-value=1.6e+02 Score=32.34 Aligned_cols=158 Identities=19% Similarity=0.239 Sum_probs=70.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhH--
Q 012561 111 RCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAK-- 188 (461)
Q Consensus 111 r~EqM~dyIKrLr~CIrWfqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~k-- 188 (461)
|++..+++|-.+..-.-..++++..|-+ ..+--...|...-.-.+.-.++...++||+..+-++..++.+|--..++
T Consensus 129 k~~~~~~~~~q~eslle~~~q~da~~qq-~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k 207 (446)
T KOG4438|consen 129 KMDLYRPFIQQLESLLELRKQLDAKYQQ-ALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNKMK 207 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444333444555544322 2221122232223333444566667777777777777777766433221
Q ss_pred -----HHhhHHHHHHh----hHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhh
Q 012561 189 -----EESDKLAALDS----LAREKE-TRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTK 258 (461)
Q Consensus 189 -----eeseKl~a~~s----~~kEkE-aR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSk 258 (461)
+..+++.|+-- +.-... -+...=.+-..|.+=|+....=++.-......++.=++=|++=-|++|--=+-
T Consensus 208 ~s~~s~~~k~l~al~llv~tLee~~~~LktqIV~sPeKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~qti~~e 287 (446)
T KOG4438|consen 208 KSSTSEKNKILNALKLLVVTLEENANCLKTQIVQSPEKLKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQTIEKE 287 (446)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 11222222211 111111 11122222333444444444444444444445556666666666666655554
Q ss_pred hhccHHHHHHH
Q 012561 259 LQKDIDAAHES 269 (461)
Q Consensus 259 LQaDl~~~~e~ 269 (461)
|++=+....+.
T Consensus 288 ~~~~lk~i~~~ 298 (446)
T KOG4438|consen 288 LKALLKKISSD 298 (446)
T ss_pred HHHHHHHHHHh
Confidence 44444444333
No 218
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=72.24 E-value=71 Score=31.62 Aligned_cols=67 Identities=16% Similarity=0.019 Sum_probs=56.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHH
Q 012561 129 FQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLA 195 (461)
Q Consensus 129 fqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~ 195 (461)
|.+-|+.++.|-.+..+.|..+...|+|.=.+....|..|+.+|..++......++.+....-+-.-
T Consensus 26 ~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~ 92 (230)
T PF10146_consen 26 SLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKP 92 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455668999999999999999999999999999999999999999998888888877665554443
No 219
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=71.66 E-value=1.5e+02 Score=31.94 Aligned_cols=141 Identities=16% Similarity=0.171 Sum_probs=93.0
Q ss_pred HHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHH
Q 012561 144 RNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGK 223 (461)
Q Consensus 144 ~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k 223 (461)
.++++..+.+..+.+..++..-+.....+.+.-+....++. +.++=+++..|+..|.++.-...........+.-.++-
T Consensus 154 ~~~~~sL~ekl~lld~al~~~~~~~~~~~~~fl~rtl~~e~-~~~~L~~~~~A~~~~~~~l~~~~e~~~~l~l~~~~~~~ 232 (511)
T PF09787_consen 154 NGAPRSLQEKLSLLDEALKREDGNAITAVVEFLKRTLKKEI-ERQELEERPKALRHYIEYLRESGELQEQLELLKAEGES 232 (511)
T ss_pred HHHHhhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 44557888888888888887777777777777677766643 56666777779999999988888888888888888888
Q ss_pred HHHHHHHHHHH-hHhHHHHHHHHHHHHhHHHh--hhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhh
Q 012561 224 AQEELQSANQR-IASINDMYKLLQEYNSSLQH--YNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQY 291 (461)
Q Consensus 224 ~q~E~~~anqq-i~slqDmyKRLQEYNTSLQQ--YNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~ 291 (461)
...|+....++ ...+++--|+++ ||.. ....+..+. +.-.+..+.-|+..+-|-+..|+++.
T Consensus 233 ~~~el~~Yk~kA~~iLq~kEklI~----~LK~~~~~~~~~~~~--~~~el~~l~~E~~~~~ee~~~l~~Qi 297 (511)
T PF09787_consen 233 EEAELQQYKQKAQRILQSKEKLIE----SLKEGCLEEGFDSST--NSIELEELKQERDHLQEEIQLLERQI 297 (511)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHH----HHHhccccccccccc--chhcchhhHHHHHHHHHHHHHHHHHH
Confidence 88888888755 456666666654 3433 222222211 11234445555555555555555543
No 220
>PRK10884 SH3 domain-containing protein; Provisional
Probab=71.26 E-value=43 Score=32.53 Aligned_cols=78 Identities=10% Similarity=0.125 Sum_probs=32.7
Q ss_pred HHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 012561 265 AAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALT 344 (461)
Q Consensus 265 ~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~ 344 (461)
.+.+.+.++|+|-+.+-..|+++++..+.....+...-+. .-.+-..|.+|-..|+.+|+..+.+.|..-++.+++.
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~---~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQ---SDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555455555444333222222111111 1111222455555555555555554444444444444
Q ss_pred H
Q 012561 345 A 345 (461)
Q Consensus 345 a 345 (461)
.
T Consensus 167 ~ 167 (206)
T PRK10884 167 R 167 (206)
T ss_pred H
Confidence 3
No 221
>PRK10698 phage shock protein PspA; Provisional
Probab=71.05 E-value=76 Score=30.81 Aligned_cols=62 Identities=18% Similarity=0.206 Sum_probs=38.1
Q ss_pred hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhh----chhhhhhhhhhHHhHHHHHHHHHhHH
Q 012561 353 LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVS----DLSALETKTEFEGQKKLINELRNHLE 414 (461)
Q Consensus 353 l~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~a----Dlsa~etrte~E~Qk~~i~eLq~RLa 414 (461)
|......|+.....-+..-.+|--...+|+-..+|. .+....++..|+.....|.+++.+-.
T Consensus 118 L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~~Ea~ae 183 (222)
T PRK10698 118 MKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQMEAEAE 183 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555555555555555555555555443 34567788899999999988876653
No 222
>PRK10698 phage shock protein PspA; Provisional
Probab=70.59 E-value=1.1e+02 Score=29.79 Aligned_cols=33 Identities=15% Similarity=0.275 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 012561 313 DALVHEVASMRVELQQVRDDRDHQLSQVQALTA 345 (461)
Q Consensus 313 ~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~a 345 (461)
+.|...+..|+..|+..|.-|+-.++..++..+
T Consensus 116 ~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a 148 (222)
T PRK10698 116 ARMKKEIGELENKLSETRARQQALMLRHQAASS 148 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555444
No 223
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=70.58 E-value=21 Score=37.79 Aligned_cols=106 Identities=9% Similarity=0.100 Sum_probs=74.6
Q ss_pred CCCcccccHHHHHHHHhhhhhccC-CC----ChHHhhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHH
Q 012561 81 ECGTIEFTREDVEALLSEKMRYKN-KF----NYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCA 155 (461)
Q Consensus 81 e~~~ieFtredVeALLnEKmk~k~-Kf----dyKgr~EqM~dyIKrLr~CIrWfqelE~~y~~EqekL~~~Le~~ek~~~ 155 (461)
..|.++|..+-.+..|.+...+=. =| +..|=..+|-+|++.+------+..+.++|-..+..|..+++..+.+..
T Consensus 351 ~~G~L~lD~~kl~~al~~np~~V~~lF~~~~~~~G~~~~l~~~l~~~~~~~G~l~~~~~~l~~~i~~l~~~i~~~~~rl~ 430 (462)
T PRK08032 351 SDGKLEIDDDKLTKALKEDPAGVKALFVGDGKKTGITTQIATNLKSWLSTTGIIKTATDGVNKTLKKLTKQYNAVSDSID 430 (462)
T ss_pred CCCeEEEcHHHHHHHHHHCHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCccchhHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 568888876656666665554411 12 2247778888888874222122444667777788888888888888888
Q ss_pred HHHHHHHchHHHHHHHHHHHHHHHHHHHHHH
Q 012561 156 EMELALRNKEEELNLIIVELRKSFASLQEKL 186 (461)
Q Consensus 156 e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L 186 (461)
..|..|..+.--++..+..|..+-+.|+..|
T Consensus 431 ~~e~rl~~qF~ame~~~s~mns~~s~L~~q~ 461 (462)
T PRK08032 431 ATIARYKAQFTQLDKLMTSLNSTSSYLTQQF 461 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888888888888888888888888887765
No 224
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=70.54 E-value=2.8e+02 Score=34.46 Aligned_cols=166 Identities=18% Similarity=0.192 Sum_probs=76.1
Q ss_pred ChHHhhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHH---H
Q 012561 107 NYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASL---Q 183 (461)
Q Consensus 107 dyKgr~EqM~dyIKrLr~CIrWfqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SL---q 183 (461)
.+++++++-..-...|--=||=|+.-+.+-..+++.+-.. -+++.|...-+++.-.-.+++...+|| .
T Consensus 1461 as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~---------vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd 1531 (1758)
T KOG0994|consen 1461 ASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEE---------VLALELPLTPEQIQQLTGEIQERVASLPNVD 1531 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH---------HHhccCCCCHHHHHHHHHHHHHHHHhcccHH
Confidence 3445444444444444455677777777777776665432 223334433344333333334433333 3
Q ss_pred HHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhh---H---HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhh
Q 012561 184 EKLAKEESDKLAALDSLAREKETRLNMERSHASL---S---EDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNT 257 (461)
Q Consensus 184 e~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~L---s---eeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNS 257 (461)
.=|..-..++-.|-.-...-+.||..++..+... . ++-+++|.+.+.+ +|.-++.+++
T Consensus 1532 ~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~a-------------i~~a~~~~~~--- 1595 (1758)
T KOG0994|consen 1532 AILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDA-------------IQGADRDIRL--- 1595 (1758)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHhhHHHHHH---
Confidence 3444444444444333333444444444433221 1 1122222222222 2333333332
Q ss_pred hhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHH
Q 012561 258 KLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQL 298 (461)
Q Consensus 258 kLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL 298 (461)
-|-+|+++.+...-.|+-=...-+.++.|-+....|+.+.
T Consensus 1596 -a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~ 1635 (1758)
T KOG0994|consen 1596 -AQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKA 1635 (1758)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344555555555555555555666666666666555543
No 225
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=70.01 E-value=71 Score=28.85 Aligned_cols=30 Identities=30% Similarity=0.443 Sum_probs=11.1
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Q 012561 318 EVASMRVELQQVRDDRDHQLSQVQALTAEV 347 (461)
Q Consensus 318 Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~ 347 (461)
|+..|+.+|.++...||....++-.|+.++
T Consensus 31 E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~ 60 (120)
T PF12325_consen 31 ELASLQEELARLEAERDELREEIVKLMEEN 60 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 226
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=69.78 E-value=1.1e+02 Score=29.50 Aligned_cols=108 Identities=19% Similarity=0.275 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhh--------hhhccHHHHHHHHhhhhhHHHHHHHhhhhh
Q 012561 216 SLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNT--------KLQKDIDAAHESIKRGEKEKSAIVENLSTL 287 (461)
Q Consensus 216 ~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNS--------kLQaDl~~~~e~~~r~eKEK~tivEnls~L 287 (461)
.|.+.|-+.+.....+++++.-.++=.-+++..+.-|+++.. .|+.-++.+...+.. ....|-+--..|
T Consensus 72 ~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~---~~~ki~~Lek~l 148 (194)
T PF15619_consen 72 VLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQE---KEKKIQELEKQL 148 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 455556666666666666665555544455555555555533 233333333222221 111222222245
Q ss_pred hhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHH
Q 012561 288 RGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVEL 326 (461)
Q Consensus 288 rG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~EL 326 (461)
.=.+++.+-||.+.+....++...-..|..||..|+.-|
T Consensus 149 eL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 149 ELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKL 187 (194)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677788888888888888877778888887776544
No 227
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=69.56 E-value=1.3e+02 Score=30.47 Aligned_cols=161 Identities=21% Similarity=0.238 Sum_probs=81.2
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH---------------
Q 012561 278 SAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQA--------------- 342 (461)
Q Consensus 278 ~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~Qvqs--------------- 342 (461)
..+..+|.-|.|-...|...+-++...-.+ .-+..+..+..+=.+|..++..|.+.+.++..
T Consensus 155 ~~~~~~l~lL~~~~~~l~~~iPs~~~~~~~---~~~~~v~~Lr~ll~kl~~lk~eR~~l~~~Lk~k~~~DDI~~~ll~~~ 231 (337)
T cd09234 155 NLHIANLKLLAGPLDELQKKLPSPSLLDRP---EDEAIEKELKRILNKVNEMRKQRRSLEQQLRDAIHEDDITSKLVTTT 231 (337)
T ss_pred HHHHHHHHHHcCcHHHHHhhCCCccccCCc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHhc
Confidence 446667777878777777776554332100 11122333444444455555556655555511
Q ss_pred -------HHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHH
Q 012561 343 -------LTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLED 415 (461)
Q Consensus 343 -------L~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLad 415 (461)
+..|+.+|.. -.+.++.+-..|..-|+ +|..|+.++--.=-.......+-+..-..+..-=....|
T Consensus 232 ~~~~e~lf~~eL~k~~~---~~~~l~~~~~~Q~~ll~----~i~~an~~f~~~r~~~~~~~~~Re~~l~~L~~ay~~y~e 304 (337)
T cd09234 232 GGDMEDLFKEELKKHDQ---LVNLIEQNLAAQENILK----ALTEANAKYAPVRKALSETKQKRESTISSLIASYEAYED 304 (337)
T ss_pred chhHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1224444444 34444554444444333 344455555211000011122222222222222222334
Q ss_pred HhhhhhhhHHhHHhhhhhhhhhcccceeeeeec
Q 012561 416 AEYKLIEGEKLRKRLHNTILELEVNLSSSALFR 448 (461)
Q Consensus 416 aE~kiiEGEkLRKKLHNTILELKGNIRv~crvr 448 (461)
.--.+-+|-+.=..|..++.-|.-+|+-||-++
T Consensus 305 l~~~l~eG~~FY~dL~~~v~~~~~~~~~f~~~~ 337 (337)
T cd09234 305 LLKKSQKGIDFYKKLEGNVSKLLQRIKSVCKVQ 337 (337)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444566799999999999999999999999764
No 228
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=69.20 E-value=28 Score=29.35 Aligned_cols=62 Identities=24% Similarity=0.195 Sum_probs=55.4
Q ss_pred HHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhh
Q 012561 268 ESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQV 329 (461)
Q Consensus 268 e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqv 329 (461)
.-++.+|.|=.+||-..-+||-+......+|..+-=..|.|.+.--.|.+|-..+|.+|.++
T Consensus 8 ~lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~~l 69 (70)
T PF08606_consen 8 SLLSTLQNEWDALMLENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALAEL 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhc
Confidence 35677889999999999999999999999999999999999999999999999999888764
No 229
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=68.39 E-value=46 Score=37.48 Aligned_cols=83 Identities=18% Similarity=0.250 Sum_probs=61.9
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH-----------hhhhhhHHHHHHhhHHHHHH
Q 012561 304 SQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE-----------LAVSSEDLEARCASQSNQIR 372 (461)
Q Consensus 304 Sq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE-----------l~~k~~~LEetCssQ~eqI~ 372 (461)
+.+.++..|+.|..||+.||+|+++++.+=+.--.++.+-.+++..-.+ |.+-....+..|..=.+-++
T Consensus 73 ~~e~~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~ 152 (632)
T PF14817_consen 73 SRENEARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTK 152 (632)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666778899999999999999999998766555555554444443322 66677777888888888888
Q ss_pred HHHHHHHHHHhhhh
Q 012561 373 SLSDQLAAAEEKLE 386 (461)
Q Consensus 373 ~Lq~QLa~A~eKLk 386 (461)
-|+.++..+++--.
T Consensus 153 rl~~~~~~~q~~~R 166 (632)
T PF14817_consen 153 RLQGQVEQLQDIQR 166 (632)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888887776543
No 230
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=68.35 E-value=1.2e+02 Score=29.23 Aligned_cols=156 Identities=15% Similarity=0.236 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHch---HHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 012561 115 MMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNK---EEELNLIIVELRKSFASLQEKLAKEES 191 (461)
Q Consensus 115 M~dyIKrLr~CIrWfqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k---~eEL~~~i~ELr~~~~SLqe~L~kees 191 (461)
|..+=+...-+=.+|-++=.+++.-+..|+..+....++....+..|..- ...|..-+..++..+..|+..|.
T Consensus 4 ~~~He~af~~iK~YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~---- 79 (201)
T PF13851_consen 4 MKNHEKAFQEIKNYYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLK---- 79 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----
Confidence 44444555555567888888888888888888887777666665554332 22334444444555555555544
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHH-HHHhHHHhh-------hhhhhccH
Q 012561 192 DKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQ-EYNSSLQHY-------NTKLQKDI 263 (461)
Q Consensus 192 eKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQ-EYNTSLQQY-------NSkLQaDl 263 (461)
.|.+++.+...+..-...+..+|..++-|...+.++...|+.-..-|. -|+.++|.| |--|+.-+
T Consensus 80 -------~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl 152 (201)
T PF13851_consen 80 -------NYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKL 152 (201)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555566666667777788888888888887777765444443 444554444 33455555
Q ss_pred HHHHHHHhhhhhHHHHHH
Q 012561 264 DAAHESIKRGEKEKSAIV 281 (461)
Q Consensus 264 ~~~~e~~~r~eKEK~tiv 281 (461)
....+.+..-+.+=..++
T Consensus 153 ~~l~~~lE~keaqL~evl 170 (201)
T PF13851_consen 153 QALSEQLEKKEAQLNEVL 170 (201)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555554444433333
No 231
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=68.19 E-value=1.8e+02 Score=31.54 Aligned_cols=31 Identities=29% Similarity=0.445 Sum_probs=15.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHhHhHHH
Q 012561 210 MERSHASLSEDLGKAQEELQSANQRIASIND 240 (461)
Q Consensus 210 ~E~~~~~LseeL~k~q~E~~~anqqi~slqD 240 (461)
.|...+++..+|-....+++.++++|..+++
T Consensus 71 ~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~ 101 (420)
T COG4942 71 LETEIASLEAQLIETADDLKKLRKQIADLNA 101 (420)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhHHHHHH
Confidence 3444455555555555555555555544433
No 232
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=68.05 E-value=94 Score=28.09 Aligned_cols=82 Identities=22% Similarity=0.286 Sum_probs=39.5
Q ss_pred HHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHH---HHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHH
Q 012561 243 KLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKS---AIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEV 319 (461)
Q Consensus 243 KRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~---tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev 319 (461)
+|+.-=..+||+=+..|++.-+.+++.|-++-++-. +....+..|+.....|+...+++---. ..=..+|
T Consensus 26 r~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~Lell-------GEK~E~v 98 (120)
T PF12325_consen 26 RRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELL-------GEKSEEV 98 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cchHHHH
Confidence 333333334444444455555555666666555542 233344445555555544444433322 2223456
Q ss_pred HHHHHHHhhhhh
Q 012561 320 ASMRVELQQVRD 331 (461)
Q Consensus 320 ~~LR~ELqqvRd 331 (461)
.-||.+++.+++
T Consensus 99 eEL~~Dv~DlK~ 110 (120)
T PF12325_consen 99 EELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHH
Confidence 666777666654
No 233
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=68.03 E-value=79 Score=27.21 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=24.6
Q ss_pred hHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHH
Q 012561 275 KEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDAL 315 (461)
Q Consensus 275 KEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L 315 (461)
-....|-..+..|...+..|...+..-....+.++.+...+
T Consensus 72 ~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~ 112 (213)
T cd00176 72 PDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFF 112 (213)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666655554433
No 234
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=67.80 E-value=1.5e+02 Score=30.45 Aligned_cols=18 Identities=11% Similarity=0.362 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHhHhH
Q 012561 221 LGKAQEELQSANQRIASI 238 (461)
Q Consensus 221 L~k~q~E~~~anqqi~sl 238 (461)
+..++..+..+..++..+
T Consensus 98 ~~~~~~~l~~~~~q~~~l 115 (421)
T TIGR03794 98 LQESYQKLTQLQEQLEEV 115 (421)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 235
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=67.77 E-value=1.5e+02 Score=30.30 Aligned_cols=166 Identities=19% Similarity=0.240 Sum_probs=85.1
Q ss_pred HHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhh------
Q 012561 183 QEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYN------ 256 (461)
Q Consensus 183 qe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYN------ 256 (461)
++.|..|+++=-..=.-|+- +=.|..-...-..|-.++.+.+.-+..|..- =.-+.+++.++-..++.+.
T Consensus 99 ~~~Ld~E~~eD~~~R~kyg~-rWtr~pS~~~~~~l~~~i~~~r~~L~~A~~s---D~~v~~k~~~~~~~l~~L~~~~~~~ 174 (339)
T cd09238 99 QESLEAEATEDSAARTQYGT-AWTRPPSATLTKNLWERLNRFRVNLEQAGDS---DESLRRRIEDAMDGMLILDDEPAAA 174 (339)
T ss_pred HHHHHHHHHHHHHHHHHhCC-CCCCCccHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHhcCcHhhHh
Confidence 34444444443333333333 4444455555567777777777766665432 2223333333333333321
Q ss_pred --hhhh--------------ccHHHHHHHHhhhhhHHHHHHHhh-----------------hhhhh-------hhhhHHH
Q 012561 257 --TKLQ--------------KDIDAAHESIKRGEKEKSAIVENL-----------------STLRG-------QYISLQE 296 (461)
Q Consensus 257 --SkLQ--------------aDl~~~~e~~~r~eKEK~tivEnl-----------------s~LrG-------~~~SLq~ 296 (461)
-++. +.|...-+.+..+.+++..+++.| +.+.+ .|.+++.
T Consensus 175 ~~Ps~~~~~~~l~~~~~~~v~~Lr~~l~~l~~lk~eR~~l~~~Lk~~~~~DDI~~~ll~~~~~~e~lF~~eL~kf~~~~~ 254 (339)
T cd09238 175 AAPTLRAPMLSTDEDDASIVGTLRSNLEELEALGNERAGIEDMMKALKRNDNILAKVMATTGSYDALFKEELKKYDSVRE 254 (339)
T ss_pred hCCCCCCcccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhhhhhHHHHHHHHHHHhhHHH
Confidence 0111 112224445666777777666665 22222 4566677
Q ss_pred HHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhh
Q 012561 297 QLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVS 356 (461)
Q Consensus 297 QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k 356 (461)
++..+...|+.-+++-.........++. ...++..|... ++.|..=..+|+|+...
T Consensus 255 ~v~~~~~~Q~~ll~~i~~~n~~f~~~~~-~~~~~~~re~~---l~~L~~ay~~y~el~~~ 310 (339)
T cd09238 255 AVSKNISSQDDLLSRLRALNEKFSQIFD-VEGWRAATESH---ATQIRAAVAKYRELREG 310 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHHHHHHH---HHHHHHHHHHHHHHHHc
Confidence 7777777777777766666655544331 23444455444 55666666777774433
No 236
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=67.71 E-value=91 Score=27.82 Aligned_cols=46 Identities=15% Similarity=0.334 Sum_probs=31.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHH
Q 012561 195 AALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASIND 240 (461)
Q Consensus 195 ~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqD 240 (461)
+.+..+.++.+.+..+..-...+.-|+.+.+....++..++..++.
T Consensus 42 ~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~er 87 (151)
T PF11559_consen 42 DLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELER 87 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777777777777776666666655544
No 237
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=67.64 E-value=1.7e+02 Score=30.83 Aligned_cols=130 Identities=26% Similarity=0.302 Sum_probs=77.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhhhHHHH----HHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHH
Q 012561 193 KLAALDSLAREKETRLNMERSHASLSEDL----GKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHE 268 (461)
Q Consensus 193 Kl~a~~s~~kEkEaR~~~E~~~~~LseeL----~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e 268 (461)
-...+.|.....+=++.+|++--.|..-+ .--+.-+.+..+-..++..++ .....|=.+||.|++..-|
T Consensus 183 ~~~i~es~vd~~eWklEvERV~PqLKv~~~~d~kDWR~hleqm~~~~~~I~~~~-------~~~~~~L~kl~~~i~~~le 255 (359)
T PF10498_consen 183 PEEIIESKVDPAEWKLEVERVLPQLKVTIRADAKDWRSHLEQMKQHKKSIESAL-------PETKSQLDKLQQDISKTLE 255 (359)
T ss_pred hhhcccccCCHHHHHHHHHHHhhhheeeccCCcchHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHH
Confidence 34456666666677777776666552110 001112222222223333222 2223344568888888877
Q ss_pred HHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhh
Q 012561 269 SIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDD 332 (461)
Q Consensus 269 ~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdD 332 (461)
.|..-||= |=..|..|...|.+.+++|+..+...+++-.--..+.+|+..+=.+|.+|..+
T Consensus 256 kI~sREk~---iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~e 316 (359)
T PF10498_consen 256 KIESREKY---INNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQE 316 (359)
T ss_pred HHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776653 44566677778888888888888888777777777777777777777666543
No 238
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=66.93 E-value=1e+02 Score=28.08 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=15.6
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhHH
Q 012561 328 QVRDDRDHQLSQVQALTAEVIKHKE 352 (461)
Q Consensus 328 qvRdDRDr~~~QvqsL~aE~~~ykE 352 (461)
-++-+-|-.+.=+.-+..-+.+||.
T Consensus 81 ~~q~EldDLL~ll~Dle~K~~kyk~ 105 (136)
T PF04871_consen 81 EAQSELDDLLVLLGDLEEKRKKYKE 105 (136)
T ss_pred hhhhhHHHHHHHHHhHHHHHHHHHH
Confidence 3444555566666666667777776
No 239
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=66.88 E-value=1.4e+02 Score=29.54 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhH
Q 012561 314 ALVHEVASMRVELQQVRDDRDHQL 337 (461)
Q Consensus 314 ~L~~Ev~~LR~ELqqvRdDRDr~~ 337 (461)
.-..|+..|+.+|..+|++....-
T Consensus 100 ~ke~Ea~~lq~el~~ar~~~~~ak 123 (246)
T PF00769_consen 100 RKEEEAEELQEELEEAREDEEEAK 123 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566667777777776655433
No 240
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=66.58 E-value=1.7e+02 Score=30.62 Aligned_cols=83 Identities=22% Similarity=0.252 Sum_probs=52.1
Q ss_pred HHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHH-HHHHHHHHHHhHHHhhhhhhhcc
Q 012561 184 EKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASIN-DMYKLLQEYNSSLQHYNTKLQKD 262 (461)
Q Consensus 184 e~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slq-DmyKRLQEYNTSLQQYNSkLQaD 262 (461)
-+|.....+|-..+-.|.+|-|. +-++|+.-|.+++.|.-.+..++..=+ -+.-+|+- |=.+|.++
T Consensus 84 Kkl~~l~keKe~L~~~~e~EEE~------ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k-------~i~~Le~e 150 (310)
T PF09755_consen 84 KKLQQLKKEKETLALKYEQEEEF------LTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQK-------KIERLEKE 150 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-------HHHHHHHH
Confidence 34555566676776777766543 447888899999988877766665432 22344444 44455566
Q ss_pred HHHHHHHHhhhhhHHHH
Q 012561 263 IDAAHESIKRGEKEKSA 279 (461)
Q Consensus 263 l~~~~e~~~r~eKEK~t 279 (461)
.......+.++.+||-.
T Consensus 151 ~~~~q~~le~Lr~EKVd 167 (310)
T PF09755_consen 151 KSAKQEELERLRREKVD 167 (310)
T ss_pred HHHhHHHHHHHHHHHHh
Confidence 65566666677777754
No 241
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=66.33 E-value=1.1e+02 Score=30.55 Aligned_cols=39 Identities=28% Similarity=0.360 Sum_probs=33.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHH
Q 012561 215 ASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQ 253 (461)
Q Consensus 215 ~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQ 253 (461)
.+...+|++++.+......|+..++|-|.||-|=|..||
T Consensus 168 ~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq 206 (216)
T KOG1962|consen 168 EKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQ 206 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 345678999999999999999999999999998777776
No 242
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=65.49 E-value=1.7e+02 Score=30.01 Aligned_cols=29 Identities=24% Similarity=0.251 Sum_probs=14.7
Q ss_pred HchHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 012561 162 RNKEEELNLIIVELRKSFASLQEKLAKEE 190 (461)
Q Consensus 162 k~k~eEL~~~i~ELr~~~~SLqe~L~kee 190 (461)
..+......++.=|..++..++.+|..-|
T Consensus 163 ~~~~~~~~~~~~fl~~ql~~~~~~l~~ae 191 (444)
T TIGR03017 163 ELKVEPAQKAALWFVQQIAALREDLARAQ 191 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555554443
No 243
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=65.27 E-value=1.4e+02 Score=29.17 Aligned_cols=16 Identities=13% Similarity=0.154 Sum_probs=7.3
Q ss_pred HHHHHHHHHhHHHHhh
Q 012561 403 KKLINELRNHLEDAEY 418 (461)
Q Consensus 403 k~~i~eLq~RLadaE~ 418 (461)
+..+..++..|..++.
T Consensus 185 ~~~~~~~~~~l~~a~~ 200 (327)
T TIGR02971 185 QAEVKSALEAVQQAEA 200 (327)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 244
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=65.17 E-value=1.5e+02 Score=29.49 Aligned_cols=191 Identities=22% Similarity=0.329 Sum_probs=105.0
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhh-hhhhhhhhHHHHHHHhHhh
Q 012561 226 EELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLS-TLRGQYISLQEQLSTYKAS 304 (461)
Q Consensus 226 ~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls-~LrG~~~SLq~QL~~skaS 304 (461)
.+..++|.+|..|+.=--|-||+=..+++-+.-+-.+++...-.+ .+++|-+ -+....+.+..||.-++.-
T Consensus 4 ~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~--------Kv~enr~~kdEE~~e~~e~qLkEAk~i 75 (205)
T KOG1003|consen 4 ADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGM--------KVIENRAQKLEEKMEAQEAQLKEAKHI 75 (205)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHH--------HHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 355566666666666666666666666554443322222222222 1333322 2444566777799999998
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH----hhhhhhHHHHHHhhHHHHHHHHHHHHHH
Q 012561 305 QDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE----LAVSSEDLEARCASQSNQIRSLSDQLAA 380 (461)
Q Consensus 305 q~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE----l~~k~~~LEetCssQ~eqI~~Lq~QLa~ 380 (461)
-++|-+..+..+.=+..+-++|-..-+-=.---+++.-|..++....- |+.+-..++..--.=.++|++|-
T Consensus 76 aE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~lt----- 150 (205)
T KOG1003|consen 76 AEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELT----- 150 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHH-----
Confidence 899988888888877777777766554444444445555555443322 44444444433333334555554
Q ss_pred HHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhhh----hHHhHHhhhhhhhhhc
Q 012561 381 AEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIE----GEKLRKRLHNTILELE 438 (461)
Q Consensus 381 A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~kiiE----GEkLRKKLHNTILELK 438 (461)
.||+=+| |+.+|.+ +.|..|+.-..|.|-++.+ -..+-+-|--|..+|-
T Consensus 151 --dKLkEaE-----~rAE~aE--RsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~~~L~ 203 (205)
T KOG1003|consen 151 --DKLKEAE-----TRAEFAE--RRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETLQELE 203 (205)
T ss_pred --HHHhhhh-----hhHHHHH--HHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 4666654 5566666 4555555444444444332 2345555666666654
No 245
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=65.12 E-value=1.6e+02 Score=32.13 Aligned_cols=97 Identities=20% Similarity=0.321 Sum_probs=74.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHH
Q 012561 128 WFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETR 207 (461)
Q Consensus 128 WfqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR 207 (461)
-|-.|++.|.-|..=+-..|+.++=+|+-+|-+|..--|=-..-|..|+...+|.+|+. |--||++=|+--
T Consensus 282 sye~Lke~~krdy~fi~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqElasmeerv---------aYQsyERaRdIq 352 (455)
T KOG3850|consen 282 SYERLKEQIKRDYKFIAETLQEERYRYERLEEQLNDLTELQQNEIANLKQELASMEERV---------AYQSYERARDIQ 352 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHH
Confidence 34455666666666677788899999999999998777766778899999999999886 678999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHH
Q 012561 208 LNMERSHASLSEDLGKAQEELQSANQRIASIN 239 (461)
Q Consensus 208 ~~~E~~~~~LseeL~k~q~E~~~anqqi~slq 239 (461)
.+.|+-|+-++. -|++.-.||+.-++
T Consensus 353 EalEscqtrisK------lEl~qq~qqv~Q~e 378 (455)
T KOG3850|consen 353 EALESCQTRISK------LELQQQQQQVVQLE 378 (455)
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 999999988863 34444444544443
No 246
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=65.05 E-value=1.4e+02 Score=28.95 Aligned_cols=67 Identities=13% Similarity=0.211 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHh
Q 012561 217 LSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVEN 283 (461)
Q Consensus 217 LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEn 283 (461)
..+..++...+...+.+++..+..=...|+.||..|+.|-..++..+......+..+++-+..|+--
T Consensus 40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~ 106 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPL 106 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555555666666666666666666666666666655555543
No 247
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=64.67 E-value=3.3e+02 Score=33.14 Aligned_cols=71 Identities=24% Similarity=0.282 Sum_probs=40.8
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHH----HHHHHHHHHHHHHHHHHHHHhHHHhhHHHHH
Q 012561 126 IKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEE----ELNLIIVELRKSFASLQEKLAKEESDKLAAL 197 (461)
Q Consensus 126 IrWfqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~e----EL~~~i~ELr~~~~SLqe~L~keeseKl~a~ 197 (461)
|.--+.--..+..+.++++++|.+.+....++|..++..-. ++| +..+.-+.|..|.++--++-.++++-+
T Consensus 312 i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~ln-l~d~~~~ey~rlk~ea~~~~~~el~~l 386 (1141)
T KOG0018|consen 312 IETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELN-LKDDQVEEYERLKEEACKEALEELEVL 386 (1141)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC-cchHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 33333334455677888888888888888888877766554 222 223333445555554444444444433
No 248
>PF08618 Opi1: Transcription factor Opi1; InterPro: IPR013927 Opi1 is a leucine zipper containing yeast transcription factor that negatively regulates phospholipid biosynthesis []. It represses the expression of several UAS(INO) cis acting element containing genes and its activity is mediated by phosphorylations catalysed by protein kinase A, protein kinase C and casein kinase II [].
Probab=64.46 E-value=34 Score=36.88 Aligned_cols=35 Identities=23% Similarity=0.439 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 012561 117 DYIKRLRLCIKWFQELEGDYAFEHERLRNALELSE 151 (461)
Q Consensus 117 dyIKrLr~CIrWfqelE~~y~~EqekL~~~Le~~e 151 (461)
|=.|+|+.||.|++--=..--.-+..|+..|+..+
T Consensus 228 ES~k~LkyCL~~Lr~AN~~i~~~i~~Lq~~l~e~e 262 (427)
T PF08618_consen 228 ESKKSLKYCLHWLRLANAHIDSKINFLQDVLEEYE 262 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67899999999998766555555666777776666
No 249
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=64.04 E-value=53 Score=27.02 Aligned_cols=33 Identities=21% Similarity=0.374 Sum_probs=24.0
Q ss_pred HHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhh
Q 012561 299 STYKASQDEAMRQKDALVHEVASMRVELQQVRD 331 (461)
Q Consensus 299 ~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRd 331 (461)
+++-.+..+|...-..|..|++.|+.||+..|+
T Consensus 36 d~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~ 68 (69)
T PF14197_consen 36 DSAERQLGDAYEENNKLKEENEALRKELEELRA 68 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455666777888888899999988876553
No 250
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=63.79 E-value=1.4e+02 Score=34.07 Aligned_cols=93 Identities=20% Similarity=0.393 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHh
Q 012561 136 YAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHA 215 (461)
Q Consensus 136 y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~ 215 (461)
|.-+..++.+.++..+.+.. .|+..++|++.+|++|+..|+++..+.. ..+.+.+|.+. .+.-..
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~----~L~~~~ee~k~eie~L~~~l~~~~r~~~----------~~~~~~rei~~-~~~~I~ 484 (652)
T COG2433 420 YEKRIKKLEETVERLEEENS----ELKRELEELKREIEKLESELERFRREVR----------DKVRKDREIRA-RDRRIE 484 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHhhhHHHHH-HHHHHH
Confidence 33344444444443333332 2344556666666666666666554433 23445555442 233445
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhHHHHHH
Q 012561 216 SLSEDLGKAQEELQSANQRIASINDMYK 243 (461)
Q Consensus 216 ~LseeL~k~q~E~~~anqqi~slqDmyK 243 (461)
.|..+|..-......+..++..+.+|++
T Consensus 485 ~L~~~L~e~~~~ve~L~~~l~~l~k~~~ 512 (652)
T COG2433 485 RLEKELEEKKKRVEELERKLAELRKMRK 512 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666666666666666666666666665
No 251
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=63.48 E-value=1.8e+02 Score=29.75 Aligned_cols=185 Identities=17% Similarity=0.254 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHH
Q 012561 217 LSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQE 296 (461)
Q Consensus 217 LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~ 296 (461)
...-|+.+++|++..|..|. ++..++..+.=..=..+..++|+.+......+..--.......+-=..|++..+++-+
T Consensus 72 ~k~KLE~LCRELQk~Nk~lk--eE~~~~~~eee~kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~e 149 (309)
T PF09728_consen 72 AKSKLESLCRELQKQNKKLK--EESKRRAREEEEKRKELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIE 149 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Confidence 34456666667766666555 2333333333334444455555555555444444444444444444455555555555
Q ss_pred HHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHH--------------HH-------HHHHHHHHHhHHhhh
Q 012561 297 QLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLS--------------QV-------QALTAEVIKHKELAV 355 (461)
Q Consensus 297 QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~--------------Qv-------qsL~aE~~~ykEl~~ 355 (461)
|...--..-+..+++|+- |+.-+.+-|++.+........ +| ..|...+..|-+
T Consensus 150 Qye~rE~~~~~~~k~keL---E~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~--- 223 (309)
T PF09728_consen 150 QYELREEHFEKLLKQKEL---EVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYSE--- 223 (309)
T ss_pred HHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 555444443333433331 333333333333332222222 22 233344444444
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHH
Q 012561 356 SSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINEL 409 (461)
Q Consensus 356 k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eL 409 (461)
|-..|+.|-+-=++-..++.....--..|.+--+--...-++-||.--..|-++
T Consensus 224 Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m 277 (309)
T PF09728_consen 224 KFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEM 277 (309)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 777788888888888888888888888888877777777777777665555444
No 252
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=63.31 E-value=2e+02 Score=31.61 Aligned_cols=76 Identities=17% Similarity=0.253 Sum_probs=45.1
Q ss_pred hhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHH
Q 012561 259 LQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLS 338 (461)
Q Consensus 259 LQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~ 338 (461)
+-.++..++..+..-+|.-+.+-+.+--||..+.++.. .....-.|+..|..|.-|.+++|=+..+
T Consensus 11 ~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a--------------~~~~~E~~l~~Lq~e~~~l~e~~v~~~a 76 (459)
T KOG0288|consen 11 NDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKA--------------KLQEKELELNRLQEENTQLNEERVREEA 76 (459)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555544443333322 2233446788899999999999988666
Q ss_pred HHHHHHHHHH
Q 012561 339 QVQALTAEVI 348 (461)
Q Consensus 339 QvqsL~aE~~ 348 (461)
-+..|+..+.
T Consensus 77 ~~~~~t~~~~ 86 (459)
T KOG0288|consen 77 TEKTLTVDVL 86 (459)
T ss_pred HHHHHHHHHH
Confidence 6666655443
No 253
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=63.22 E-value=57 Score=32.02 Aligned_cols=88 Identities=22% Similarity=0.333 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhH
Q 012561 139 EHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLS 218 (461)
Q Consensus 139 EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~Ls 218 (461)
|.-.|+..|...+.+....+...... .....=.-.|.|.|.|.|- -| |+++-|...+ ....-.
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~~------------~~~~~~~~~lvk~e~EqLL---~Y-K~~ql~~~~~-~~~~~~ 159 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAESR------------RSDTDSKPALVKREFEQLL---DY-KERQLRELEE-GRSKSG 159 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc------------ccCCcchHHHHHHHHHHHH---HH-HHHHHHhhhc-cCCCCC
Confidence 56667666665555555544443321 1111112234444444331 22 4444444444 566777
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHH
Q 012561 219 EDLGKAQEELQSANQRIASINDMYK 243 (461)
Q Consensus 219 eeL~k~q~E~~~anqqi~slqDmyK 243 (461)
.+|..+..++....+||..|+.-.+
T Consensus 160 ~~l~~v~~Dl~~ie~QV~~Le~~L~ 184 (195)
T PF12761_consen 160 KNLKSVREDLDTIEEQVDGLESHLS 184 (195)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999887543
No 254
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=63.15 E-value=1.5e+02 Score=28.69 Aligned_cols=164 Identities=17% Similarity=0.176 Sum_probs=81.7
Q ss_pred hHHhhHhHHHHHHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHH
Q 012561 108 YKERCENMMDYIKRLRLCIKWFQELEGDYAFEH--ERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEK 185 (461)
Q Consensus 108 yKgr~EqM~dyIKrLr~CIrWfqelE~~y~~Eq--ekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~ 185 (461)
||+|..==-+|-|.|+-..+=+...-..-.+.- ..+....+..-..|..+-..|..-+.++...+.++.+..-.+.+.
T Consensus 28 ~keRa~IEe~Yak~L~kLakk~~~~~~~gt~~~~w~~i~~~~e~~a~~H~~l~~~L~~~~~~l~~~~~~~~k~rK~~k~~ 107 (261)
T cd07648 28 LRERATIEETYSKALNKLAKQASNSSQLGTFAPLWLVLRVSTEKLSELHLQLVQKLQELIKDVQKYGEEQHKKHKKVKEE 107 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556788888754443322221122222 566666777667777777777655666666666666654444321
Q ss_pred H---hHHHhhHHHHHHhhHHHHHHHHH----HHHHHhhh--HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhh
Q 012561 186 L---AKEESDKLAALDSLAREKETRLN----MERSHASL--SEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYN 256 (461)
Q Consensus 186 L---~keeseKl~a~~s~~kEkEaR~~----~E~~~~~L--seeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYN 256 (461)
. .+...........+.|-|..=.. +++++... ..+++|++.-+..|. +|.-..++.||..=++|
T Consensus 108 ~~~~~k~~~~~~~~~~~l~KaK~~Y~~~c~e~e~~~~~~~s~k~~eK~~~K~~ka~------~~Y~~~v~~~~~~~~~~- 180 (261)
T cd07648 108 ESGTAEAVQAIQTTTAALQKAKEAYHARCLELERLRRENASPKEIEKAEAKLKKAQ------DEYKALVEKYNNIRADF- 180 (261)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH-
Confidence 1 22221122222222222222111 11122111 356666666665543 23334455555444444
Q ss_pred hhhhccHHHHHHHHhhhhhHHHHHH
Q 012561 257 TKLQKDIDAAHESIKRGEKEKSAIV 281 (461)
Q Consensus 257 SkLQaDl~~~~e~~~r~eKEK~tiv 281 (461)
..+...+-+.+-.++.+.-..+
T Consensus 181 ---~~~m~~~~~~~Q~lEe~Ri~~~ 202 (261)
T cd07648 181 ---ETKMTDSCKRFQEIEESHLRQM 202 (261)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667667777776654433
No 255
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=62.98 E-value=1.8e+02 Score=32.35 Aligned_cols=68 Identities=15% Similarity=0.341 Sum_probs=50.3
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHHHhHhhHH----HHHHhhHHHHHHHHHHHHHHhh--------hhhhhhhhHHHHHHH
Q 012561 276 EKSAIVENLSTLRGQYISLQEQLSTYKASQD----EAMRQKDALVHEVASMRVELQQ--------VRDDRDHQLSQVQAL 343 (461)
Q Consensus 276 EK~tivEnls~LrG~~~SLq~QL~~skaSq~----Ea~kQK~~L~~Ev~~LR~ELqq--------vRdDRDr~~~QvqsL 343 (461)
.+..+++....|=.+++++-.+|...+...+ ..+.+-..|..++..|=.++.. .+|.||+.+.++..+
T Consensus 128 ~R~~vl~~A~~La~~f~~~~~~L~~~~~~~n~~i~~~V~~IN~l~~~IA~LN~~I~~~~~~~~ndLlDqRD~ll~eLS~~ 207 (624)
T PRK12714 128 ERQSMLDSGNSLATRFKQLNGQMDSLSNEVNSGLTSSVDEVNRLTQQIAKINGTIGSSAQNAAPDLLDQRDALVSKLVGY 207 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHhh
Confidence 3566777777777777777777777776666 4556677788888888888765 688999988887655
No 256
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=62.46 E-value=1.7e+02 Score=29.14 Aligned_cols=12 Identities=25% Similarity=0.019 Sum_probs=5.0
Q ss_pred HHHHHHhHHHHh
Q 012561 406 INELRNHLEDAE 417 (461)
Q Consensus 406 i~eLq~RLadaE 417 (461)
+..++..|+.++
T Consensus 192 ~~~~~a~l~~a~ 203 (346)
T PRK10476 192 RAAREAALAIAE 203 (346)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 257
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=62.30 E-value=1.5e+02 Score=28.38 Aligned_cols=149 Identities=21% Similarity=0.312 Sum_probs=88.9
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHch-HHHH--------HHHHHHHHHHHHHHHHHHhHHHhhHHHHH
Q 012561 127 KWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNK-EEEL--------NLIIVELRKSFASLQEKLAKEESDKLAAL 197 (461)
Q Consensus 127 rWfqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k-~eEL--------~~~i~ELr~~~~SLqe~L~keeseKl~a~ 197 (461)
.-|++=--.|..-..+|++-+.--.++|.++|.++... .-+. .....+|..-+..|+|.-. -++.|+.+
T Consensus 5 ~a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqq--R~~~L~qv 82 (182)
T PF15035_consen 5 DAYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQ--RSEELAQV 82 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHH--hHHHHHHH
Confidence 34566666777888899999999999999999999432 0000 0011223333334443332 23344444
Q ss_pred HhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHH
Q 012561 198 DSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEK 277 (461)
Q Consensus 198 ~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK 277 (461)
.+.=+| .-..+-..-..|++||.|++.+..++.+.+..=++.++ ....++-+|-+.=|..+-
T Consensus 83 N~lLRe--QLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~---~ee~~~~~y~~~eh~rll------------- 144 (182)
T PF15035_consen 83 NALLRE--QLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWR---EEEENFNQYLSSEHSRLL------------- 144 (182)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhcccccHHH-------------
Confidence 444332 33344455678999999999999999988887776655 455566666664444332
Q ss_pred HHHHHhhhhhhhhhhhHHH
Q 012561 278 SAIVENLSTLRGQYISLQE 296 (461)
Q Consensus 278 ~tivEnls~LrG~~~SLq~ 296 (461)
.+-..+..||-++..|+.
T Consensus 145 -~LWr~v~~lRr~f~elr~ 162 (182)
T PF15035_consen 145 -SLWREVVALRRQFAELRT 162 (182)
T ss_pred -HHHHHHHHHHHHHHHHHH
Confidence 233445556665555544
No 258
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=61.80 E-value=65 Score=36.97 Aligned_cols=103 Identities=30% Similarity=0.320 Sum_probs=72.7
Q ss_pred HHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHH
Q 012561 322 MRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEG 401 (461)
Q Consensus 322 LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~ 401 (461)
+..-|.+.--|+|-.+-||+-|+..|..-.| |+-.||.+ |..-+.+|.+++|.|+--=+ .+|..|.
T Consensus 109 yQerLaRLe~dkesL~LQvsvLteqVeaQgE---KIrDLE~c-------ie~kr~kLnatEEmLQqell----srtsLET 174 (861)
T KOG1899|consen 109 YQERLARLEMDKESLQLQVSVLTEQVEAQGE---KIRDLETC-------IEEKRNKLNATEEMLQQELL----SRTSLET 174 (861)
T ss_pred HHHHHHHHhcchhhheehHHHHHHHHHHhhh---hHHHHHHH-------HHHHHhhhchHHHHHHHHHH----hhhhHHH
Confidence 3445667778999999999999999999999 89999764 55566778888888875433 4577777
Q ss_pred hHH----HHHHHHHhHHHHhhhhhhhHHhHHhhhhhhhhhc
Q 012561 402 QKK----LINELRNHLEDAEYKLIEGEKLRKRLHNTILELE 438 (461)
Q Consensus 402 Qk~----~i~eLq~RLadaE~kiiEGEkLRKKLHNTILELK 438 (461)
||- -|.+|.-+|+-.|..=.|-|+=-++-.|-|.|+-
T Consensus 175 qKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn 215 (861)
T KOG1899|consen 175 QKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVN 215 (861)
T ss_pred HHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHH
Confidence 774 4567777777777555554443334455555553
No 259
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=61.21 E-value=66 Score=26.74 Aligned_cols=59 Identities=25% Similarity=0.352 Sum_probs=32.8
Q ss_pred HHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhh
Q 012561 233 QRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQY 291 (461)
Q Consensus 233 qqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~ 291 (461)
.+|..+=|++-.||.=|--|+.=|..|......-.+...+++.|..+.-+-|.+|=|..
T Consensus 11 ~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 11 EKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444444444444444455555566677777777777777776643
No 260
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=60.93 E-value=1.6e+02 Score=28.19 Aligned_cols=171 Identities=19% Similarity=0.208 Sum_probs=103.6
Q ss_pred hHHhhHhHHHHHHHHHH-HHHHHHHhhh-hhHHHHHHHHHHHHHHHhhHHHHHHHHHchH-HHHHHHHHHHHHHHHHHHH
Q 012561 108 YKERCENMMDYIKRLRL-CIKWFQELEG-DYAFEHERLRNALELSEQKCAEMELALRNKE-EELNLIIVELRKSFASLQE 184 (461)
Q Consensus 108 yKgr~EqM~dyIKrLr~-CIrWfqelE~-~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~-eEL~~~i~ELr~~~~SLqe 184 (461)
||+|.+==-+|-|+|+- |=+|+..-+. +.-.=-..+.+..+..=..|..+-..|...+ ..+.....++++..-.++.
T Consensus 28 ~keRa~iE~eYak~L~kLakk~~~~~~~gsl~~a~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~ 107 (236)
T cd07651 28 YKERASIEEEYAKRLEKLSRKSLGGSEEGGLKNSLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASSYTQKRKKIQS 107 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455688888864 4445432221 1111123455555666677888888887665 4687888888887777777
Q ss_pred HHhHHHhhHHHHHHhhHHHHHHHHHH----HHHHhh----hHHHHHHHHHHHHHHHHHhHhHHHHH-HHHHHHHhHHHhh
Q 012561 185 KLAKEESDKLAALDSLAREKETRLNM----ERSHAS----LSEDLGKAQEELQSANQRIASINDMY-KLLQEYNSSLQHY 255 (461)
Q Consensus 185 ~L~keeseKl~a~~s~~kEkEaR~~~----E~~~~~----LseeL~k~q~E~~~anqqi~slqDmy-KRLQEYNTSLQQY 255 (461)
.+.|....+...+..+.|=+..=..+ +..+.. -..+++|++..+..+.+-+....+-| ..+++||..=..|
T Consensus 108 ~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~e~~~~~~~~~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~ 187 (236)
T cd07651 108 HMEKLLKKKQDQEKYLEKAREKYEADCSKINSYTLQSQLTWGKELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIW 187 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777776666665544432222 222211 12688899888888887766666655 3556666555544
Q ss_pred hhhhhccHHHHHHHHhhhhhHHHHHHH
Q 012561 256 NTKLQKDIDAAHESIKRGEKEKSAIVE 282 (461)
Q Consensus 256 NSkLQaDl~~~~e~~~r~eKEK~tivE 282 (461)
+ .|...+-..+-.++.+.-..+-
T Consensus 188 ~----~~~~~~~~~~Q~lEe~Ri~~lk 210 (236)
T cd07651 188 N----REWKAALDDFQDLEEERIQFLK 210 (236)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHH
Confidence 4 4556666677777777655554
No 261
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=60.31 E-value=87 Score=25.06 Aligned_cols=30 Identities=17% Similarity=0.271 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 012561 315 LVHEVASMRVELQQVRDDRDHQLSQVQALT 344 (461)
Q Consensus 315 L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~ 344 (461)
+..++......|.++.+.++....+.....
T Consensus 10 ~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ 39 (123)
T PF02050_consen 10 AQQELQEAEEQLEQLQQERQEYQEQLSESQ 39 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334444444444444444554444444444
No 262
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=59.97 E-value=4e+02 Score=32.53 Aligned_cols=134 Identities=12% Similarity=0.134 Sum_probs=69.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhHhHH--HHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhh
Q 012561 211 ERSHASLSEDLGKAQEELQSANQRIASIN--DMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLR 288 (461)
Q Consensus 211 E~~~~~LseeL~k~q~E~~~anqqi~slq--DmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~Lr 288 (461)
+.....+.+++..+..++..+..++..++ |.|+-.++|. -|++ ++........+.+..-..-...+..++
T Consensus 296 ~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~~eL~-el~~-------ql~~~~~~a~~~~~~~~~a~~~~e~~~ 367 (1353)
T TIGR02680 296 REEERELDARTEALEREADALRTRLEALQGSPAYQDAEELE-RARA-------DAEALQAAAADARQAIREAESRLEEER 367 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444 5565555554 2322 333333333332222222244444455
Q ss_pred hhhhhHHHHHHHhHhhHHHHHHhhHHHHHH-------------------------HHHHHHHHhhhhhhhhhhHHHHHHH
Q 012561 289 GQYISLQEQLSTYKASQDEAMRQKDALVHE-------------------------VASMRVELQQVRDDRDHQLSQVQAL 343 (461)
Q Consensus 289 G~~~SLq~QL~~skaSq~Ea~kQK~~L~~E-------------------------v~~LR~ELqqvRdDRDr~~~QvqsL 343 (461)
.....+...++......+++...-..+..+ +..-|.+|...+..|++.++.+..+
T Consensus 368 ~~~~~~~~r~~~~~~~l~~~~~el~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~i~~L~~~ 447 (1353)
T TIGR02680 368 RRLDEEAGRLDDAERELRAAREQLARAAERAGLSPAHTAEPDAALAAQELQELGALDARRQDADRVIAQRSEQVALLRRR 447 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544444444444444444444333322211 1344788889999999999999999
Q ss_pred HHHHHHhHH
Q 012561 344 TAEVIKHKE 352 (461)
Q Consensus 344 ~aE~~~ykE 352 (461)
.++..+|.+
T Consensus 448 ~~~~e~a~~ 456 (1353)
T TIGR02680 448 DDVADRAEA 456 (1353)
T ss_pred HHHHHHHHH
Confidence 999888877
No 263
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=59.57 E-value=83 Score=25.68 Aligned_cols=42 Identities=12% Similarity=0.344 Sum_probs=26.1
Q ss_pred HhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhH
Q 012561 234 RIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKE 276 (461)
Q Consensus 234 qi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKE 276 (461)
.+.-++.++.+++.++..+++.+..++ +++.+.+++..+..+
T Consensus 3 ~~~~~~~l~~~l~~~~~q~~~l~~~~~-~~~~~~~eL~~l~~~ 44 (106)
T PF01920_consen 3 LQNKFQELNQQLQQLEQQIQQLERQLR-ELELTLEELEKLDDD 44 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCc
Confidence 445566666666666666666666664 555666666655554
No 264
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=59.42 E-value=1.9e+02 Score=28.61 Aligned_cols=19 Identities=5% Similarity=-0.046 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHHHHHhHHh
Q 012561 335 HQLSQVQALTAEVIKHKEL 353 (461)
Q Consensus 335 r~~~QvqsL~aE~~~ykEl 353 (461)
+.-+++.....++..|+.|
T Consensus 118 ~ak~~l~~a~~~~~r~~~L 136 (331)
T PRK03598 118 QAQAAYDYAQNFYNRQQGL 136 (331)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344455555556666653
No 265
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=59.28 E-value=1.1e+02 Score=26.03 Aligned_cols=74 Identities=19% Similarity=0.272 Sum_probs=53.6
Q ss_pred HHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHH
Q 012561 160 ALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASIN 239 (461)
Q Consensus 160 ~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slq 239 (461)
.|....+++......+...++.+++++.+-++||--| ..---++.++.++|.-|+-++..-+...+.-|..|+
T Consensus 7 ~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~ka-------dqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~ 79 (96)
T PF08647_consen 7 SMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKA-------DQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLK 79 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3556677888888889999999999999999997654 444457777777777776666655555555555555
Q ss_pred H
Q 012561 240 D 240 (461)
Q Consensus 240 D 240 (461)
|
T Consensus 80 ~ 80 (96)
T PF08647_consen 80 E 80 (96)
T ss_pred H
Confidence 5
No 266
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=58.95 E-value=1.8e+02 Score=32.66 Aligned_cols=41 Identities=15% Similarity=0.217 Sum_probs=24.9
Q ss_pred HHhhHHHHHH--HHHHHHHHhhhHHHHHHHHHHHHHHHHHhHh
Q 012561 197 LDSLAREKET--RLNMERSHASLSEDLGKAQEELQSANQRIAS 237 (461)
Q Consensus 197 ~~s~~kEkEa--R~~~E~~~~~LseeL~k~q~E~~~anqqi~s 237 (461)
++.|-++.=. ...+.+...-|.++|..++.++..+..++..
T Consensus 250 a~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~ 292 (726)
T PRK09841 250 ANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNV 292 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455543222 2344555667888888888888777776543
No 267
>PRK11546 zraP zinc resistance protein; Provisional
Probab=58.77 E-value=33 Score=32.05 Aligned_cols=72 Identities=19% Similarity=0.267 Sum_probs=50.2
Q ss_pred HHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q 012561 268 ESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQ 339 (461)
Q Consensus 268 e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~Q 339 (461)
|....+++=...-.-....||....+-+..|.+.-++..---+.-.+|.+|+..||..|.+-|-.+|-.++.
T Consensus 47 EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~~~~k 118 (143)
T PRK11546 47 EQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRDIAMAE 118 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455554555555566777777776777776666655555566789999999999999888877766654
No 268
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=58.72 E-value=2.3e+02 Score=29.37 Aligned_cols=48 Identities=10% Similarity=0.189 Sum_probs=32.7
Q ss_pred hhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhh
Q 012561 257 TKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKAS 304 (461)
Q Consensus 257 SkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaS 304 (461)
+.||.++......+..++..-+.|...|....-..+.++..+..-...
T Consensus 325 ~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~ 372 (388)
T PF04912_consen 325 KSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKFKENMET 372 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777777777787777777777777777666666666664444333
No 269
>PRK12705 hypothetical protein; Provisional
Probab=58.57 E-value=2.9e+02 Score=30.55 Aligned_cols=134 Identities=15% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH-hhhhhhHHHHHHhhHHHHHHHHHHH
Q 012561 299 STYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE-LAVSSEDLEARCASQSNQIRSLSDQ 377 (461)
Q Consensus 299 ~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE-l~~k~~~LEetCssQ~eqI~~Lq~Q 377 (461)
.......+++.+.+..+-.|+...|.|+++--..=.+.-.+...=...+.+-.+ |..+-..|+..-..-.+++..+..+
T Consensus 52 ~~~~~~~~~~~~~~~~~e~e~~~~~~~~~~~e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 131 (508)
T PRK12705 52 AALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNE 131 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhhhhchhhhhhhhhh---------HHhHHHHHHHHHhHHHHhhhhhhhHHhHHhhhhhhh-------------
Q 012561 378 LAAAEEKLEVSDLSALETKTEF---------EGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTIL------------- 435 (461)
Q Consensus 378 La~A~eKLk~aDlsa~etrte~---------E~Qk~~i~eLq~RLadaE~kiiEGEkLRKKLHNTIL------------- 435 (461)
|. ++|.+|..|.+... .+-..+|.+.++...+ ++++-=+.+.-+-.
T Consensus 132 Le------~ia~lt~~eak~~l~~~~~~~~~~e~~~~i~~~e~~~~~------~a~~~A~~ii~~aiqr~a~~~~~e~tv 199 (508)
T PRK12705 132 LY------RVAGLTPEQARKLLLKLLDAELEEEKAQRVKKIEEEADL------EAERKAQNILAQAMQRIASETASDLSV 199 (508)
T ss_pred HH------HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhccchhhhhee
Q ss_pred --------hhcc--------cceee
Q 012561 436 --------ELEV--------NLSSS 444 (461)
Q Consensus 436 --------ELKG--------NIRv~ 444 (461)
|+|| |||.|
T Consensus 200 s~v~lp~demkGriIGreGrNir~~ 224 (508)
T PRK12705 200 SVVPIPSDAMKGRIIGREGRNIRAF 224 (508)
T ss_pred eeeecCChHhhccccCccchhHHHH
No 270
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=58.56 E-value=1.9e+02 Score=29.76 Aligned_cols=59 Identities=15% Similarity=0.222 Sum_probs=31.7
Q ss_pred hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhhhhHH
Q 012561 353 LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEK 425 (461)
Q Consensus 353 l~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~kiiEGEk 425 (461)
|..-+..||..-|.=....+.|++.|...+. =..+|+.++..|..|.++...+++.+..
T Consensus 94 lqkl~~eLe~vLs~~q~KnekLke~LerEq~--------------wL~Eqqql~~sL~~r~~elk~~~~~~se 152 (268)
T PF11802_consen 94 LQKLISELEMVLSTVQSKNEKLKEDLEREQQ--------------WLDEQQQLLESLNKRHEELKNQVETFSE 152 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHhhhccch
Confidence 3334455555555555555555555544433 2345666666666666666655555443
No 271
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=58.45 E-value=1.3e+02 Score=26.56 Aligned_cols=79 Identities=14% Similarity=0.149 Sum_probs=37.4
Q ss_pred HHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 012561 269 SIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVI 348 (461)
Q Consensus 269 ~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~ 348 (461)
...++.++.++.--.|.-+.--...-+.+.........+.-..-+.+.+++..|+.+|...+..|++.. +...|...+.
T Consensus 47 ~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k~-eyd~La~~I~ 125 (139)
T PF05615_consen 47 LYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQNKE-EYDALAKKIN 125 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 333444444444333333333333333344444444444444445555666666666666666666554 3444443333
No 272
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=58.32 E-value=55 Score=33.43 Aligned_cols=55 Identities=25% Similarity=0.330 Sum_probs=45.2
Q ss_pred HHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHH
Q 012561 246 QEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLST 300 (461)
Q Consensus 246 QEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~ 300 (461)
|+-|+-|-.-|..||+......+.++++++|++.+-|-+.-|-|.+.-|...++-
T Consensus 148 ~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~E 202 (290)
T COG4026 148 QKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDE 202 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 4445555556677889999999999999999999999999999988888877754
No 273
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=58.23 E-value=1.3e+02 Score=26.48 Aligned_cols=94 Identities=16% Similarity=0.134 Sum_probs=70.5
Q ss_pred hhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH------HHHHHhHHhhhhhhHHHHHH
Q 012561 291 YISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALT------AEVIKHKELAVSSEDLEARC 364 (461)
Q Consensus 291 ~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~------aE~~~ykEl~~k~~~LEetC 364 (461)
.+.|+.=|+.+...-+.|..+--.+..++......|++..+.|+.+..+..... .++..|.. =+..|.+.+
T Consensus 4 ~~rL~~vl~l~~~~ee~a~~~la~a~~~~~~~~~~L~~L~~y~~~y~~~~~~~~~~g~~~~~l~~~~~---fi~~L~~~I 80 (147)
T PRK05689 4 ASALATLLDLAEKAEEQAALQLGQARQELQQAEQQLKMLEDYRLEYRQQLNDRGSAGMTSSWWINYQQ---FLQQLEKAI 80 (147)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHH---HHHHHHHHH
Confidence 457788888888888888888888888888888888888888887776655432 23333333 456788889
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhh
Q 012561 365 ASQSNQIRSLSDQLAAAEEKLEV 387 (461)
Q Consensus 365 ssQ~eqI~~Lq~QLa~A~eKLk~ 387 (461)
..|...+..++.++..+...+.-
T Consensus 81 ~~q~~~v~~~~~~ve~~r~~~~~ 103 (147)
T PRK05689 81 TQQRQQLTQWTQKVDNARKYWQE 103 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888877643
No 274
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=58.11 E-value=66 Score=33.13 Aligned_cols=81 Identities=26% Similarity=0.298 Sum_probs=63.6
Q ss_pred HHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhhhhHHhH
Q 012561 348 IKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLR 427 (461)
Q Consensus 348 ~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~kiiEGEkLR 427 (461)
.+|+..|+--.-|.--=++..=||.+|.+.|.--++=+--.+-..-+...+||-||+.+..|+..+++.--+|.+.+.|=
T Consensus 91 ekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli 170 (302)
T PF09738_consen 91 EKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELI 170 (302)
T ss_pred HHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888777777777766777777777777777777766666666677888999999999999999999888887776654
Q ss_pred H
Q 012561 428 K 428 (461)
Q Consensus 428 K 428 (461)
.
T Consensus 171 ~ 171 (302)
T PF09738_consen 171 E 171 (302)
T ss_pred H
Confidence 3
No 275
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=58.02 E-value=96 Score=28.15 Aligned_cols=90 Identities=24% Similarity=0.291 Sum_probs=62.7
Q ss_pred cccccHHHHHHHHhhhhhccCCCChHHhhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHc
Q 012561 84 TIEFTREDVEALLSEKMRYKNKFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRN 163 (461)
Q Consensus 84 ~ieFtredVeALLnEKmk~k~KfdyKgr~EqM~dyIKrLr~CIrWfqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~ 163 (461)
.+-.|.|-|.-|.-+=.| |++++--+=-.-|-|.++..+ .---++|.. .+-++++.++..+ +.-+.
T Consensus 18 ~~a~~~ek~~klvDelVk-kGeln~eEak~~vddl~~q~k---~~~~e~e~K---~~r~i~~ml~~~~-------~~r~~ 83 (108)
T COG3937 18 LAAETAEKVQKLVDELVK-KGELNAEEAKRFVDDLLRQAK---EAQGELEEK---IPRKIEEMLSDLE-------VARQS 83 (108)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHH---HHhhhHHHh---hhHHHHHHHhhcc-------ccccc
Confidence 355789999999988777 999999888888888888887 111122221 3334444443332 44445
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Q 012561 164 KEEELNLIIVELRKSFASLQEKLA 187 (461)
Q Consensus 164 k~eEL~~~i~ELr~~~~SLqe~L~ 187 (461)
--.+|+.-|..|+++++-|+.++.
T Consensus 84 ~~~~l~~rvd~Lerqv~~Lenk~k 107 (108)
T COG3937 84 EMDELTERVDALERQVADLENKLK 107 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhc
Confidence 558899999999999999998874
No 276
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=57.98 E-value=2.7e+02 Score=29.99 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=27.3
Q ss_pred HhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhh
Q 012561 270 IKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKAS 304 (461)
Q Consensus 270 ~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaS 304 (461)
-.++.+|++.-...|..|.+..++|+..++.....
T Consensus 366 ~~~v~~Er~~~~~~l~~~~~~~~~le~~~~~~~~~ 400 (582)
T PF09731_consen 366 KEKVEQERNGRLAKLAELNSRLKALEEALDARSEA 400 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888888899999999999998877664433
No 277
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=57.93 E-value=1.3e+02 Score=29.57 Aligned_cols=75 Identities=15% Similarity=0.168 Sum_probs=50.7
Q ss_pred HHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Q 012561 269 SIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQAL 343 (461)
Q Consensus 269 ~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL 343 (461)
...+|+-+|+-+---+..=..+.+.||..|+..+.-+....-.-.....|+..|+.|-+..+.-=+..-.||..|
T Consensus 106 rR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~L 180 (192)
T PF11180_consen 106 RRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQL 180 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777766666666677888888888888888888777777777777777776655544333333333333
No 278
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=57.34 E-value=4.4e+02 Score=32.18 Aligned_cols=73 Identities=15% Similarity=0.316 Sum_probs=42.7
Q ss_pred HhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhh
Q 012561 310 RQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKL 385 (461)
Q Consensus 310 kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKL 385 (461)
.-..++-.-+..|+..+-....-|+....-+.++.. -|.|+......|+...++-.+++..+...|..--.+|
T Consensus 402 ~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~---~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql 474 (1141)
T KOG0018|consen 402 ERRAELEARIKQLKESVERLDKRRNKLAAKITSLSR---SYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQL 474 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 333444444444444443333333333333333333 3555666778888888888888888888887766655
No 279
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=56.73 E-value=1.5e+02 Score=33.30 Aligned_cols=97 Identities=22% Similarity=0.217 Sum_probs=52.1
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHH
Q 012561 227 ELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQD 306 (461)
Q Consensus 227 E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~ 306 (461)
++--+|.|+.+++...--.-+=|.-+|-=||||-+.+--....++-+--||..+.+-|..-++.-.-|++-+.-...---
T Consensus 206 elrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyA 285 (596)
T KOG4360|consen 206 ELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYA 285 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34445555555544444444444555556777777777777777777777777777665555543333333322222222
Q ss_pred HHHHhhHHHHHHHHHHH
Q 012561 307 EAMRQKDALVHEVASMR 323 (461)
Q Consensus 307 Ea~kQK~~L~~Ev~~LR 323 (461)
|-+..-...-.|+.|||
T Consensus 286 E~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 286 ECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 33333344455566655
No 280
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=56.65 E-value=1.8e+02 Score=27.60 Aligned_cols=165 Identities=18% Similarity=0.228 Sum_probs=97.7
Q ss_pred hHHhhHhHHHHHHHHH-HHHHHHHHhh------hhhHHHHHHHHHHHHHHHhhHHHHHHHHHchH-HHHHHHHHHHHHHH
Q 012561 108 YKERCENMMDYIKRLR-LCIKWFQELE------GDYAFEHERLRNALELSEQKCAEMELALRNKE-EELNLIIVELRKSF 179 (461)
Q Consensus 108 yKgr~EqM~dyIKrLr-~CIrWfqelE------~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~-eEL~~~i~ELr~~~ 179 (461)
|+.|.+==-+|-|+|+ +|=+|+.... .++..=-..+.++++..-..|..+-..+.+.+ .+|...+.++++..
T Consensus 28 ~keRa~iE~eYak~L~kLa~k~~~~~~~~~~~~~s~~~aw~~i~~e~~~~a~~H~~~a~~l~~~v~~~l~~~~~~~~~~r 107 (251)
T cd07653 28 VKERAAIEQEYAKKLRKLVKKYLPKKKEEDEYSFSSVKAFRSILNEVNDIAGQHELIAENLNSNVCKELKTLISELRQER 107 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445567888884 4555654321 22333334566666666677777766666554 78888888887777
Q ss_pred HHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhH--------------HHHHHHHHHHHHHHHHhHhHHHHHHHH
Q 012561 180 ASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLS--------------EDLGKAQEELQSANQRIASINDMYKLL 245 (461)
Q Consensus 180 ~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~Ls--------------eeL~k~q~E~~~anqqi~slqDmyKRL 245 (461)
-.+.+.+.+-..+....+..+.|-+..=..+.+...... .+++|++..+..+.+ ++.+-=
T Consensus 108 K~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~~~~~~s~~~~eK~~~k~~k~~~------~~~~a~ 181 (251)
T cd07653 108 KKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKADADMNLTKADVEKAKANANLKTQ------AAEEAK 181 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHH------HHHHHH
Confidence 777777777777777666655554332222111111111 456666555555544 344455
Q ss_pred HHHHhHHHhhhhhh----hccHHHHHHHHhhhhhHHH
Q 012561 246 QEYNSSLQHYNTKL----QKDIDAAHESIKRGEKEKS 278 (461)
Q Consensus 246 QEYNTSLQQYNSkL----QaDl~~~~e~~~r~eKEK~ 278 (461)
.+|-.+|+.+|.-. +.|+...-+.+..++.+.-
T Consensus 182 ~~Y~~~l~~~N~~~~~~y~~~~p~~~~~~q~le~~ri 218 (251)
T cd07653 182 NEYAAQLQKFNKEQRQHYSTDLPQIFDKLQELDEKRI 218 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence 67777777777753 4688888777777775543
No 281
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.21 E-value=2.2e+02 Score=31.77 Aligned_cols=99 Identities=19% Similarity=0.231 Sum_probs=59.2
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHH
Q 012561 328 QVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLIN 407 (461)
Q Consensus 328 qvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~ 407 (461)
.+.-|=+..-+++++|++++..-.|+-.+.+.|=|.--+|+-+.+. +.-...-.-+..|+--.-++-+ |.+-+++.
T Consensus 408 ~L~~~EE~Lr~Kldtll~~ln~Pnq~k~Rl~~L~e~~r~q~~~~~~---~~~~~iD~~~~~e~~e~lt~~~-e~l~~Lv~ 483 (508)
T KOG3091|consen 408 ALTPDEEELRAKLDTLLAQLNAPNQLKARLDELYEILRMQNSQLKL---QESYWIDFDKLIEMKEHLTQEQ-EALTKLVN 483 (508)
T ss_pred cCCccHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhcchhcc---ccceeechhhhHHHHHHHHHHH-HHHHHHHH
Confidence 4455666667788888888888877777777776655444422111 1111111122223322333333 56677788
Q ss_pred HHHHhHHHHhhhhhhhHHhHHhh
Q 012561 408 ELRNHLEDAEYKLIEGEKLRKRL 430 (461)
Q Consensus 408 eLq~RLadaE~kiiEGEkLRKKL 430 (461)
=|..-++|.+++|+|+=-.++|-
T Consensus 484 Ilk~d~edi~~~l~E~~~~~~~~ 506 (508)
T KOG3091|consen 484 ILKGDQEDIKHQLIEDLEICRKS 506 (508)
T ss_pred HHHhHHHHHHHHHHhhHHHHhhh
Confidence 88888888889999887766654
No 282
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=55.87 E-value=3.9e+02 Score=31.19 Aligned_cols=24 Identities=0% Similarity=0.113 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhH
Q 012561 114 NMMDYIKRLRLCIKWFQELEGDYA 137 (461)
Q Consensus 114 qM~dyIKrLr~CIrWfqelE~~y~ 137 (461)
+...-++.+.....||..++...-
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1042)
T TIGR00618 230 HLREALQQTQQSHAYLTQKREAQE 253 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566777888888887766443
No 283
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=55.85 E-value=84 Score=27.73 Aligned_cols=74 Identities=16% Similarity=0.151 Sum_probs=46.2
Q ss_pred ccccHHHHHHHHhhhhhccCCCChHHhhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHch
Q 012561 85 IEFTREDVEALLSEKMRYKNKFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNK 164 (461)
Q Consensus 85 ieFtredVeALLnEKmk~k~KfdyKgr~EqM~dyIKrLr~CIrWfqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k 164 (461)
=.|+.+||+.| ..|++++++-. -+.|+..+-...+.....|.++...+..+
T Consensus 37 R~Y~~~~~~~l----------------------------~~I~~lr~~G~-sL~eI~~~l~~~~~~~~~~~~~~~~l~~~ 87 (133)
T cd04787 37 RLYSEKDLSRL----------------------------RFILSARQLGF-SLKDIKEILSHADQGESPCPMVRRLIEQR 87 (133)
T ss_pred eeCCHHHHHHH----------------------------HHHHHHHHcCC-CHHHHHHHHhhhccCCCcHHHHHHHHHHH
Confidence 45999999988 34555554322 23334443332222233456666778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 012561 165 EEELNLIIVELRKSFASLQEKLA 187 (461)
Q Consensus 165 ~eEL~~~i~ELr~~~~SLqe~L~ 187 (461)
.++++.-|.+|....+.|+..+.
T Consensus 88 ~~~l~~~i~~l~~~~~~l~~~~~ 110 (133)
T cd04787 88 LAETERRIKELLKLRDRMQQAVS 110 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888887777776653
No 284
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=55.48 E-value=3.1e+02 Score=30.44 Aligned_cols=70 Identities=30% Similarity=0.341 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhHHHHHH-HHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Q 012561 143 LRNALELSEQKCAEMEL-ALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDL 221 (461)
Q Consensus 143 L~~~Le~~ek~~~e~E~-~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL 221 (461)
|.++...-++.+.+++. +++|..+.++. +...+.+|+..+.-.+++|. .+|+-...+..-+
T Consensus 330 leSqr~y~e~~~~e~~qsqlen~k~~~e~----~~~e~~~l~~~~~~~e~~kk--------------~~e~k~~q~q~k~ 391 (493)
T KOG0804|consen 330 LESQRKYYEQIMSEYEQSQLENQKQYYEL----LITEADSLKQESSDLEAEKK--------------IVERKLQQLQTKL 391 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHhhhhhhhHHHHHHH--------------HHHHHHHHHHHHH
Confidence 33333444456666666 55554444444 44445566666665555543 3445555666666
Q ss_pred HHHHHHHHH
Q 012561 222 GKAQEELQS 230 (461)
Q Consensus 222 ~k~q~E~~~ 230 (461)
.|++.|++.
T Consensus 392 ~k~~kel~~ 400 (493)
T KOG0804|consen 392 KKCQKELKE 400 (493)
T ss_pred HHHHHHHHH
Confidence 666666554
No 285
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=55.17 E-value=66 Score=26.26 Aligned_cols=32 Identities=13% Similarity=0.325 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 012561 217 LSEDLGKAQEELQSANQRIASINDMYKLLQEY 248 (461)
Q Consensus 217 LseeL~k~q~E~~~anqqi~slqDmyKRLQEY 248 (461)
|..++..+...+..++.++..++++-+-|...
T Consensus 10 l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l 41 (106)
T PF01920_consen 10 LNQQLQQLEQQIQQLERQLRELELTLEELEKL 41 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44445555555555555555555555544443
No 286
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=55.09 E-value=1.9e+02 Score=28.78 Aligned_cols=87 Identities=22% Similarity=0.242 Sum_probs=57.4
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH----
Q 012561 277 KSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE---- 352 (461)
Q Consensus 277 K~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE---- 352 (461)
+-.+...|.+.+-....|.++..-++++..+-=.--+.|.+++.+|+.++++ +..|+++|++
T Consensus 83 ~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~--------------lr~el~k~~e~dpq 148 (203)
T KOG3433|consen 83 LQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILES--------------LRWELAKIQETDPQ 148 (203)
T ss_pred HHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHhhcCHH
Confidence 3456677777777778888888888888766555555888888888765544 4466777777
Q ss_pred hhhhhhHH----HHHHhhHHHHHHHHHHH
Q 012561 353 LAVSSEDL----EARCASQSNQIRSLSDQ 377 (461)
Q Consensus 353 l~~k~~~L----EetCssQ~eqI~~Lq~Q 377 (461)
...+...+ -+-|..=..+|.+|+.=
T Consensus 149 v~~k~~~~~K~~~eaanrwtDnI~il~dy 177 (203)
T KOG3433|consen 149 VFEKKVHLEKTMAEAANRWTDNIFILIDY 177 (203)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 22233333 34466666677777653
No 287
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=54.89 E-value=98 Score=27.96 Aligned_cols=67 Identities=21% Similarity=0.277 Sum_probs=40.4
Q ss_pred HHHHHHHHHhHHhhhhhhHHHHH--HhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHH
Q 012561 341 QALTAEVIKHKELAVSSEDLEAR--CASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDA 416 (461)
Q Consensus 341 qsL~aE~~~ykEl~~k~~~LEet--CssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLada 416 (461)
-+|..|+..++. .+..|+.. |.--...+..|+.+|.++...+ +.++-..=+..-..|.++..|+|+-
T Consensus 70 LALLDElE~~~~---~i~~~~~~~e~~~~a~~~~~l~~~Le~ae~~~------~~~~~~~~~~~e~~~~~~~~riaEl 138 (139)
T PF13935_consen 70 LALLDELERAQQ---RIAELEQECENEDIALDVQKLRVELEAAEKRI------AAELAEQAEAYEGEIADYAKRIAEL 138 (139)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 356666666555 45555555 5555567788888888888877 2222222233445666676777764
No 288
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=54.01 E-value=1.9e+02 Score=26.91 Aligned_cols=85 Identities=26% Similarity=0.290 Sum_probs=41.6
Q ss_pred HhhHHHHHHHHHHHHHHhhhhhh-hhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHH--HHHHHHhhhh
Q 012561 310 RQKDALVHEVASMRVELQQVRDD-RDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSD--QLAAAEEKLE 386 (461)
Q Consensus 310 kQK~~L~~Ev~~LR~ELqqvRdD-RDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~--QLa~A~eKLk 386 (461)
++.-.+...+..||.|++..+.. ....-++...|..|+.+.+. .=++.|..++. +|....+|-
T Consensus 51 ~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~-------------~L~~ei~~l~a~~klD~n~eK~- 116 (177)
T PF07798_consen 51 NQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQ-------------ELREEINKLRAEVKLDLNLEKG- 116 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHhHH-
Confidence 34444555666778888765432 22222333344444444333 11122333333 333333333
Q ss_pred hhchhhhhhhhhhHHhHHHHHHHHHhHHH
Q 012561 387 VSDLSALETKTEFEGQKKLINELRNHLED 415 (461)
Q Consensus 387 ~aDlsa~etrte~E~Qk~~i~eLq~RLad 415 (461)
+.+.++..+...|.++..|+.-
T Consensus 117 -------~~r~e~~~~~~ki~e~~~ki~~ 138 (177)
T PF07798_consen 117 -------RIREEQAKQELKIQELNNKIDT 138 (177)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666667777777777754
No 289
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=54.01 E-value=3.1e+02 Score=30.48 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=16.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHH
Q 012561 359 DLEARCASQSNQIRSLSDQLA 379 (461)
Q Consensus 359 ~LEetCssQ~eqI~~Lq~QLa 379 (461)
.+.+.|.+-.++|.-||+||.
T Consensus 425 ~~~~~~~s~d~~I~dLqEQlr 445 (493)
T KOG0804|consen 425 REKEALGSKDEKITDLQEQLR 445 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344577788889999999985
No 290
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=53.95 E-value=81 Score=34.63 Aligned_cols=78 Identities=21% Similarity=0.247 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHH-HHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHH
Q 012561 223 KAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAH-ESIKRGEKEKSAIVENLSTLRGQYISLQEQLST 300 (461)
Q Consensus 223 k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~-e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~ 300 (461)
-+-...+....++..+..=|++|++=|..|++-++++-.-...+- ....+++++...+-+....|.|....|+.||+.
T Consensus 63 Tlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 63 TLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445555666666666677777777777664444433333322 124566667777777777788888888888854
No 291
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=53.95 E-value=1.8e+02 Score=30.83 Aligned_cols=69 Identities=17% Similarity=0.343 Sum_probs=45.2
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHHHhHhhH----HHHHHhhHHHHHHHHHHHHHHhh----------hhhhhhhhHHHHH
Q 012561 276 EKSAIVENLSTLRGQYISLQEQLSTYKASQ----DEAMRQKDALVHEVASMRVELQQ----------VRDDRDHQLSQVQ 341 (461)
Q Consensus 276 EK~tivEnls~LrG~~~SLq~QL~~skaSq----~Ea~kQK~~L~~Ev~~LR~ELqq----------vRdDRDr~~~Qvq 341 (461)
.+..+++....|=.+++.+-.+|...+..- ...+.+-..|..++..|=.++.. .+|.||+.+.++.
T Consensus 128 ~r~~vl~~a~~la~~~n~~~~~l~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I~~~~~~g~~~ndL~DqRD~ll~eLS 207 (456)
T PRK07191 128 MRQQVIESANAMALRFNNVNNFIVQQKKSIGQQRDATVKQINSLTRSIADYNQKILKNRSDGNNISDLLDQRDLQIKKLS 207 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHH
Confidence 355666666666666666655555554444 44567777788888888877754 5788888777766
Q ss_pred HHH
Q 012561 342 ALT 344 (461)
Q Consensus 342 sL~ 344 (461)
.+.
T Consensus 208 ~~v 210 (456)
T PRK07191 208 GLI 210 (456)
T ss_pred hhc
Confidence 554
No 292
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=53.24 E-value=1.5e+02 Score=28.30 Aligned_cols=103 Identities=19% Similarity=0.233 Sum_probs=63.4
Q ss_pred CcccccHHHHHHHHhhhhhccCCCChHHhhHhHHH--HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHH
Q 012561 83 GTIEFTREDVEALLSEKMRYKNKFNYKERCENMMD--YIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELA 160 (461)
Q Consensus 83 ~~ieFtredVeALLnEKmk~k~KfdyKgr~EqM~d--yIKrLr~CIrWfqelE~~y~~EqekL~~~Le~~ek~~~e~E~~ 160 (461)
|.-.|+.+||+.|-.-+--...-|.- ..|-. |+ .|+. +.|+..=+.....=.+-|...++....+.++++..
T Consensus 34 G~R~y~~~dl~~L~~I~~l~~~Gm~i----~~i~~~~~~-~l~~-~~l~~~G~~t~~~R~~lLe~~~~~l~~ri~eLe~~ 107 (175)
T PRK13182 34 GHYIFTEEDLQLLEYVKSQIEEGQNM----QDTQKPSSN-DVEE-TQVNTIVQNISSVDFEQLEAQLNTITRRLDELERQ 107 (175)
T ss_pred CCEEECHHHHHHHHHHHHHHHcCCCH----HHHHHHhhh-hhhH-HHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55679999997654333212333322 12211 11 0110 33455555555555566777777888888888888
Q ss_pred HHchHHHHH--------HHHHHHHHHHHHHHHHHhHHHh
Q 012561 161 LRNKEEELN--------LIIVELRKSFASLQEKLAKEES 191 (461)
Q Consensus 161 lk~k~eEL~--------~~i~ELr~~~~SLqe~L~kees 191 (461)
+..+-.... .-|+||...+.+|+.+++++|.
T Consensus 108 l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e~ 146 (175)
T PRK13182 108 LQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKKLEP 146 (175)
T ss_pred HHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777665543 4688999999999999998763
No 293
>PTZ00464 SNF-7-like protein; Provisional
Probab=53.21 E-value=2.3e+02 Score=27.75 Aligned_cols=73 Identities=11% Similarity=0.129 Sum_probs=42.7
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHh
Q 012561 192 DKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIK 271 (461)
Q Consensus 192 eKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~ 271 (461)
-|..|+.++++=|-.....++..+.+. -|+.+..-+ +.+..-.+++.-|+.=|..|...|..+ +++.+...+.
T Consensus 59 ~K~~Al~~LK~KK~~E~ql~~l~~q~~-nleq~~~~i----e~a~~~~~vv~amk~g~kaLK~~~k~i--~id~Vd~l~D 131 (211)
T PTZ00464 59 HKQRAMQLLQQKRMYQNQQDMMMQQQF-NMDQLQFTT----ESVKDTKVQVDAMKQAAKTLKKQFKKL--NVDKVEDLQD 131 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHH
Confidence 477788888765544333333332221 122222222 233344688889999999999999887 6776654433
No 294
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=52.94 E-value=90 Score=31.97 Aligned_cols=131 Identities=23% Similarity=0.266 Sum_probs=64.1
Q ss_pred CCCCCCCcccccHHHHHHHHhhhhhccCCCChHHhhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHH
Q 012561 77 NAGSECGTIEFTREDVEALLSEKMRYKNKFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAE 156 (461)
Q Consensus 77 ~agse~~~ieFtredVeALLnEKmk~k~KfdyKgr~EqM~dyIKrLr~CIrWfqelE~~y~~EqekL~~~Le~~ek~~~e 156 (461)
++|.+---|-..-|-|-+=|.+|. .+-.--|...|-|.+.-|-.=.+.=+--+.++ .|+|+|=-+--+.
T Consensus 55 aeGADlvlIATDaD~~GReLA~kf--------~eeLrg~VGhiERmK~PiGHDvEhiD~elvrk-El~nAlvRAGLkt-- 123 (290)
T COG4026 55 AEGADLVLIATDADRVGRELAEKF--------FEELRGMVGHIERMKIPIGHDVEHIDVELVRK-ELKNALVRAGLKT-- 123 (290)
T ss_pred hccCCEEEEeecCcchhHHHHHHH--------HHHHHHhhhhhheeccCCCCCccccCHHHHHH-HHHHHHHHHHHHH--
Confidence 335444444222555666666663 34455677778887776643222222222322 3455543222111
Q ss_pred HHHHHHchHHHHH--HHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 012561 157 MELALRNKEEELN--LIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQR 234 (461)
Q Consensus 157 ~E~~lk~k~eEL~--~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqq 234 (461)
|. --+++|+..+..+.++|.....+|-+.++-+.. .+..-..+.+.|.++..|..+++..
T Consensus 124 -----------L~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~elee-------le~e~ee~~erlk~le~E~s~LeE~ 185 (290)
T COG4026 124 -----------LQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEE-------LEAEYEEVQERLKRLEVENSRLEEM 185 (290)
T ss_pred -----------HhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 124567777777777777777777665543321 1222233444444455554444444
Q ss_pred hH
Q 012561 235 IA 236 (461)
Q Consensus 235 i~ 236 (461)
..
T Consensus 186 ~~ 187 (290)
T COG4026 186 LK 187 (290)
T ss_pred HH
Confidence 33
No 295
>PF12614 RRF_GI: Ribosome recycling factor ; InterPro: IPR022253 This family of proteins is found in bacteria and viruses. Proteins in this family are approximately 130 amino acids in length. There are two conserved sequence motifs: LPS and LKR. Overproduction of ribosome recycling factor (RRF) reduces tna operon expression and increases the rate of cleavage of TnaC-tRNA(2)(Pro), relieving the growth inhibition associated with plasmid-mediated tnaC overexpression.
Probab=52.84 E-value=37 Score=31.42 Aligned_cols=70 Identities=31% Similarity=0.467 Sum_probs=46.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHH----HHHHHHHHHH--HhHHhhhhhhHHHHHHhhHHHHHHHHHHHH
Q 012561 306 DEAMRQKDALVHEVASMRVELQQVRDDRDHQLS----QVQALTAEVI--KHKELAVSSEDLEARCASQSNQIRSLSDQL 378 (461)
Q Consensus 306 ~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~----QvqsL~aE~~--~ykEl~~k~~~LEetCssQ~eqI~~Lq~QL 378 (461)
++++||-.+++.+..| ||++||-.|+-+++ ++++|..++. .|++..=-+..+|.....-.+.+..|..+|
T Consensus 18 ~~~~k~~ka~A~q~~C---eLKRVRRSRnWql~Ge~~~l~~~~~~lk~~~~~~~~~li~kie~~L~~~~dkle~l~~~L 93 (128)
T PF12614_consen 18 REAVKQAKALARQHGC---ELKRVRRSRNWQLSGEADQLQSFLDQLKAEDYEEFQFLIKKIEAALLQHSDKLEPLEDKL 93 (128)
T ss_pred HHHHHHHHHHHHHhCc---hHHHHHHhhhhHHhhhHHHHHHHHHHHHhcchHHHHHHHHHHHHHhcccccccchHHHHH
Confidence 4678888999999888 89999999999875 6777777762 344433333444444444444444444444
No 296
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=52.76 E-value=1.6e+02 Score=27.41 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHH
Q 012561 218 SEDLGKAQEELQSANQRIASIND 240 (461)
Q Consensus 218 seeL~k~q~E~~~anqqi~slqD 240 (461)
.+++..++.++..++.+|..|.+
T Consensus 26 ~~e~~~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 26 KEERDNLKTQLKEADKQIKDLKK 48 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555566666666665555
No 297
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=52.57 E-value=68 Score=26.47 Aligned_cols=36 Identities=22% Similarity=0.388 Sum_probs=26.7
Q ss_pred hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhh
Q 012561 353 LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVS 388 (461)
Q Consensus 353 l~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~a 388 (461)
|..+..++|.+......+|..+...+...+.++.-+
T Consensus 38 Lr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~~ 73 (74)
T PF12329_consen 38 LRAKIKELEKQIKELKKKLEELEKELESLEERLKRA 73 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 666777788888888888888877777777776543
No 298
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=52.53 E-value=1.3e+02 Score=31.68 Aligned_cols=98 Identities=17% Similarity=0.280 Sum_probs=56.0
Q ss_pred hhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhH----HHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHH
Q 012561 334 DHQLSQVQALTAEVIKHKELAVSSEDLEARCASQ----SNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINEL 409 (461)
Q Consensus 334 Dr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ----~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eL 409 (461)
+....+.+.|.+-...|+.-......+...|++. +.+++.|.+-|...+.. .-.+....+.+|
T Consensus 7 ~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~-------------~~~e~~~~i~~L 73 (330)
T PF07851_consen 7 EELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKS-------------LSAEERELIEKL 73 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------------CChhHHHHHHHH
Confidence 3333444555555566666555555666677654 44444444443333222 122456677777
Q ss_pred HHhHHHHhhhhhhhHHhHHhhhhhhhhh-cccceee
Q 012561 410 RNHLEDAEYKLIEGEKLRKRLHNTILEL-EVNLSSS 444 (461)
Q Consensus 410 q~RLadaE~kiiEGEkLRKKLHNTILEL-KGNIRv~ 444 (461)
++-+.++...+.+||..=.+=+-.+|-| =||+-|.
T Consensus 74 ~~~Ik~r~~~l~DmEa~LPkkNGlyL~liLGnVNVs 109 (330)
T PF07851_consen 74 EEDIKERRCQLFDMEAFLPKKNGLYLRLILGNVNVS 109 (330)
T ss_pred HHHHHHHHhhHHHHHhhCCCCCCcccceecccccce
Confidence 8778888888888876533337777763 4777664
No 299
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=52.32 E-value=2.3e+02 Score=27.37 Aligned_cols=170 Identities=14% Similarity=0.171 Sum_probs=93.1
Q ss_pred HHhhHhHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHH
Q 012561 109 KERCENMMDYIKRLRLCIKWFQELEG--DYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKL 186 (461)
Q Consensus 109 Kgr~EqM~dyIKrLr~CIrWfqelE~--~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L 186 (461)
|+|..-=-+|-|+|+-..+=+..-.+ +...=-..+....+..=..|..+-..|..-++++.....++++.--.++..+
T Consensus 29 keRa~iE~eYak~L~kLak~~~~~~e~gsl~~aw~~i~~e~e~~a~~H~~la~~L~~~v~~l~~~~~~~~~~~K~~~~~~ 108 (239)
T cd07647 29 KQRAKAEEDYGKALLKLSKSAGPGDEIGTLKSSWDSLRKETENVANAHIQLAQSLREEAEKLEEFREKQKEERKKTEDIM 108 (239)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445788888654432221111 1111123344455555566666666666666666555555555544444444
Q ss_pred hHHHhhHHHHHHhhHH-----------HHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHh
Q 012561 187 AKEESDKLAALDSLAR-----------EKETRLNMERSHASL-SEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQH 254 (461)
Q Consensus 187 ~keeseKl~a~~s~~k-----------EkEaR~~~E~~~~~L-seeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQ 254 (461)
.+....+...+..+.| ...|+...+++.... ..|++|++.-+..+.+.+....+-|+- ...-|+.
T Consensus 109 ~k~qk~~~~~~~~l~KaKk~Y~~~C~e~e~a~~~~~~~~~~~~~ke~eK~~~K~~k~~~~~~~a~~~Y~~---~v~~l~~ 185 (239)
T cd07647 109 KRSQKNKKELYKKTMKAKKSYEQKCREKDKAEQAYEKSSSGAQPKEAEKLKKKAAQCKTSAEEADSAYKS---SIGCLED 185 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 4444444333332222 122333344444333 368899988888887777666655542 2233555
Q ss_pred hhhhhhccHHHHHHHHhhhhhHHHHHH
Q 012561 255 YNTKLQKDIDAAHESIKRGEKEKSAIV 281 (461)
Q Consensus 255 YNSkLQaDl~~~~e~~~r~eKEK~tiv 281 (461)
+|-+-+.|...+-+.+-.++-+.-.++
T Consensus 186 ~~~~~~~~~~~~~~~~Q~lEe~Ri~~l 212 (239)
T cd07647 186 ARVEWESEHATACQVFQNMEEERIKFL 212 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666667788888888888888887777
No 300
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=52.13 E-value=3.7e+02 Score=29.85 Aligned_cols=106 Identities=16% Similarity=0.201 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--------HHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHh
Q 012561 200 LAREKETRLNMERSHASLSEDLGKAQEELQSAN--------QRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIK 271 (461)
Q Consensus 200 ~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~an--------qqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~ 271 (461)
+++-.+.+.+.....-.|..+|+.+|.....+- -+...+.--.|||.-=|.-|---|-.||+-..+..
T Consensus 362 Lrrfq~ekeatqELieelrkelehlr~~kl~~a~p~rgrsSaRe~eleqevkrLrq~nr~l~eqneelngtilTls---- 437 (502)
T KOG0982|consen 362 LRRFQEEKEATQELIEELRKELEHLRRRKLVLANPVRGRSSAREIELEQEVKRLRQPNRILSEQNEELNGTILTLS---- 437 (502)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHhccccchhhhhhhhhhhhhhhHH----
Confidence 333344444556667778888888888876655 45666777788888878777777888877666553
Q ss_pred hhhhHHHHHHHhhhhhhhhhhhHHHHHH-HhHhhHHHHHHhhHHH
Q 012561 272 RGEKEKSAIVENLSTLRGQYISLQEQLS-TYKASQDEAMRQKDAL 315 (461)
Q Consensus 272 r~eKEK~tivEnls~LrG~~~SLq~QL~-~skaSq~Ea~kQK~~L 315 (461)
..+.-|.-.+-|.+.||-.-++ .+++...+|++.+++.
T Consensus 438 ------~q~lkn~ha~~~~~~Slaaeid~~sqdeLmqafqeqeei 476 (502)
T KOG0982|consen 438 ------TQFLKNWHATFSLFFSLAAEIDEMSQDELMQAFQEQEEI 476 (502)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 2333444455566677766666 3455555566555543
No 301
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=52.05 E-value=2.3e+02 Score=27.43 Aligned_cols=149 Identities=28% Similarity=0.316 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhccCCCChHHhhHhHHHHHHHHHHHHH-----HHHHhhh---hhHHHHHHHHHHHHHHHhhHHHHHHHH
Q 012561 90 EDVEALLSEKMRYKNKFNYKERCENMMDYIKRLRLCIK-----WFQELEG---DYAFEHERLRNALELSEQKCAEMELAL 161 (461)
Q Consensus 90 edVeALLnEKmk~k~KfdyKgr~EqM~dyIKrLr~CIr-----WfqelE~---~y~~EqekL~~~Le~~ek~~~e~E~~l 161 (461)
+-|++.++++.. .++.+++.+.+-|..|..+|. |-..+|. ....+...|...++.......+.|..+
T Consensus 77 ~~v~~~~~~~~~-----~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i 151 (247)
T PF06705_consen 77 ERVENQISEKQE-----QLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENI 151 (247)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHH-----HHHhhhHHHHHHHHHHHHHHHH-Hh
Q 012561 162 RNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNME-----RSHASLSEDLGKAQEELQSANQ-RI 235 (461)
Q Consensus 162 k~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E-----~~~~~LseeL~k~q~E~~~anq-qi 235 (461)
-.+.++. ...+.+++..|...+-.++..+..+-+.-.... ..++.+.+||.-++..+....+ +.
T Consensus 152 ~krl~e~----------~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~~e~~~R~ 221 (247)
T PF06705_consen 152 LKRLEEE----------ENRLQEKIEKEKNTRESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNALALESQERE 221 (247)
T ss_pred HHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHHHHHHHHHHHHhHHH
Q 012561 236 ASINDMYKLLQEYNSSLQ 253 (461)
Q Consensus 236 ~slqDmyKRLQEYNTSLQ 253 (461)
.+=+|+.--|-.|=..||
T Consensus 222 ~~Dd~Iv~aln~yt~~lQ 239 (247)
T PF06705_consen 222 QSDDDIVQALNHYTKALQ 239 (247)
T ss_pred hhhhHHHHHHHHHHHHHH
No 302
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=52.00 E-value=3.6e+02 Score=29.58 Aligned_cols=129 Identities=22% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHH
Q 012561 143 LRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLG 222 (461)
Q Consensus 143 L~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~ 222 (461)
|-..|.+....|..+=..|.+|.||| .-.||--+.+.--.=..-+--|+++=.++.--.||...+++.-..--.
T Consensus 261 l~~el~siRr~Cd~lP~~m~tKveel---ar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqarea--- 334 (442)
T PF06637_consen 261 LGPELESIRRTCDHLPKIMTTKVEEL---ARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREA--- 334 (442)
T ss_pred CcchHHHHHHHHhhchHHHHHHHHHH---HHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhcc----HHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHH
Q 012561 223 KAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKD----IDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQL 298 (461)
Q Consensus 223 k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaD----l~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL 298 (461)
+||+| ...|-|.-..+.|||..+.--|...+-....|+.|+
T Consensus 335 -----------------------------------klqaec~rQ~qlaLEEKaaLrkerd~L~keLeekkreleql~~q~ 379 (442)
T PF06637_consen 335 -----------------------------------KLQAECARQTQLALEEKAALRKERDSLAKELEEKKRELEQLKMQL 379 (442)
T ss_pred -----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHhhHHHHHHhh
Q 012561 299 STYKASQDEAMRQK 312 (461)
Q Consensus 299 ~~skaSq~Ea~kQK 312 (461)
+..-++.|--||-|
T Consensus 380 ~v~~saLdtCikaK 393 (442)
T PF06637_consen 380 AVKTSALDTCIKAK 393 (442)
T ss_pred HhhhhHHHHHHHhc
No 303
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=51.86 E-value=5.6e+02 Score=31.80 Aligned_cols=69 Identities=20% Similarity=0.168 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHH--------HHHHHhhhhhhchhhhhhhhhhHHhHHH
Q 012561 337 LSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQ--------LAAAEEKLEVSDLSALETKTEFEGQKKL 405 (461)
Q Consensus 337 ~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~Q--------La~A~eKLk~aDlsa~etrte~E~Qk~~ 405 (461)
..+...+..++..|..+..+...++..|+.-..||-...-- |..-..++..--.-....+.+|+.|...
T Consensus 997 ~~~~er~l~dnl~~~~l~~q~~e~~re~~~ld~Qi~~~~~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~ 1073 (1294)
T KOG0962|consen 997 QYQRERNLKDNLTLRNLERKLKELERELSELDKQILEADIKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKK 1073 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHH
Confidence 35677788888999999999999999999988888766621 2222233333344456778888887544
No 304
>PRK09630 DNA topoisomerase IV subunit A; Provisional
Probab=51.60 E-value=28 Score=38.13 Aligned_cols=55 Identities=15% Similarity=0.165 Sum_probs=42.4
Q ss_pred cccHHHHHHHHhhhhhccCCCChHHhhHhHHHHHHHH-----------HHHHHHHHHhhhhhHHHH
Q 012561 86 EFTREDVEALLSEKMRYKNKFNYKERCENMMDYIKRL-----------RLCIKWFQELEGDYAFEH 140 (461)
Q Consensus 86 eFtredVeALLnEKmk~k~KfdyKgr~EqM~dyIKrL-----------r~CIrWfqelE~~y~~Eq 140 (461)
+.|+||+..|+.=+||.=+|||-..--+.|-.+-+.+ ..+|.||..|=..|-...
T Consensus 391 ~v~~~d~~~l~~i~i~ri~~fd~~k~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~l~~kyg~~~ 456 (479)
T PRK09630 391 PVDKQATAQLASLTIKKILCFNENSYTKELACIEKKQAAVQKDLSQLKKYTVKYLKGLLETYGQLG 456 (479)
T ss_pred CCCHHHHHHHhhhhHHHhhhcCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3589999999999999999999766655555444443 368999999988885443
No 305
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=51.48 E-value=1.3e+02 Score=27.09 Aligned_cols=75 Identities=31% Similarity=0.326 Sum_probs=46.2
Q ss_pred cHHHHHHHHhhhhhccCCCChHHhhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHH
Q 012561 88 TREDVEALLSEKMRYKNKFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEE 167 (461)
Q Consensus 88 tredVeALLnEKmk~k~KfdyKgr~EqM~dyIKrLr~CIrWfqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eE 167 (461)
.+.-|-|||.|.-. -..||+.|... .+.+ .......+|+..|+.++++. +...-.+-+.
T Consensus 65 nP~tvLALLDElE~-------------~~~~i~~~~~~----~e~~-~~a~~~~~l~~~Le~ae~~~---~~~~~~~~~~ 123 (139)
T PF13935_consen 65 NPATVLALLDELER-------------AQQRIAELEQE----CENE-DIALDVQKLRVELEAAEKRI---AAELAEQAEA 123 (139)
T ss_pred cchHHHHHHHHHHH-------------HHHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHHHHH---HHHHhHHHHH
Confidence 47789999998744 55788887755 1111 12334566777888887776 2222333344
Q ss_pred HHHHHHHHHHHHHHHH
Q 012561 168 LNLIIVELRKSFASLQ 183 (461)
Q Consensus 168 L~~~i~ELr~~~~SLq 183 (461)
...+|.++++.++-|+
T Consensus 124 ~e~~~~~~~~riaEle 139 (139)
T PF13935_consen 124 YEGEIADYAKRIAELE 139 (139)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 5667777777766653
No 306
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=51.27 E-value=4.2e+02 Score=30.18 Aligned_cols=72 Identities=21% Similarity=0.288 Sum_probs=46.0
Q ss_pred HHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHH--HHH-----HHHHHHHhhhHHHHHHHHHHHHHH
Q 012561 160 ALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREK--ETR-----LNMERSHASLSEDLGKAQEELQSA 231 (461)
Q Consensus 160 ~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEk--EaR-----~~~E~~~~~LseeL~k~q~E~~~a 231 (461)
++..++++|.+.|.+|++.+.+++..+..+|++..-+.+....=+ ..- ...+..+..|.+..-|++.-...+
T Consensus 83 ~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~~~~~~ 161 (632)
T PF14817_consen 83 ELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQGQVEQL 161 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455688899999999999999999999888887766654333221 111 123444555666655555544443
No 307
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=51.09 E-value=1.1e+02 Score=24.84 Aligned_cols=53 Identities=30% Similarity=0.411 Sum_probs=33.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHH
Q 012561 163 NKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMY 242 (461)
Q Consensus 163 ~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmy 242 (461)
.|+++|.+-+..|...++.|...+.. |..++.-++.|..+||++|--.---|
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~----------------------------lr~~v~~ak~EAaRAN~RlDN~a~sY 54 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNA----------------------------LRADVQAAKEEAARANQRLDNIAQSY 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHhhHhhc
Confidence 45666666666666666666554432 22345578889999999987665544
Q ss_pred H
Q 012561 243 K 243 (461)
Q Consensus 243 K 243 (461)
|
T Consensus 55 ~ 55 (56)
T PF04728_consen 55 K 55 (56)
T ss_dssp -
T ss_pred c
Confidence 4
No 308
>PF04870 Moulting_cycle: Moulting cycle; InterPro: IPR006954 This family contains a conserved region found in a number of uncharacterised Caenorhabditis elegans proteins.
Probab=51.03 E-value=18 Score=37.63 Aligned_cols=47 Identities=28% Similarity=0.533 Sum_probs=32.4
Q ss_pred CCCCCCCcccccHHHHHHHHhhhhhccCCCChHHhhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 012561 77 NAGSECGTIEFTREDVEALLSEKMRYKNKFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRN 145 (461)
Q Consensus 77 ~agse~~~ieFtredVeALLnEKmk~k~KfdyKgr~EqM~dyIKrLr~CIrWfqelE~~y~~EqekL~~ 145 (461)
+-|++..++.||+|.|-.+..+=- +.-|.||..|+.+|..||-+=-+
T Consensus 221 ~~g~dG~plyftken~t~~~~~~~----------------------~~~~e~fe~L~ks~s~eQ~~emn 267 (325)
T PF04870_consen 221 GRGPDGQPLYFTKENVTEIYGEYE----------------------AKKIEWFEDLDKSYSEEQKKEMN 267 (325)
T ss_pred hcCCCCccceehhhhHHHHhhHHH----------------------HHHHHHHHHHHhhcCHHHHHHHH
Confidence 446666778888888766652211 12278999999999999865443
No 309
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=50.46 E-value=6.1e+02 Score=31.80 Aligned_cols=230 Identities=17% Similarity=0.150 Sum_probs=105.9
Q ss_pred Hhhhhh-HHHHHHHHHHHHHHHhhHHHHHHHHHch------HHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHH
Q 012561 131 ELEGDY-AFEHERLRNALELSEQKCAEMELALRNK------EEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLARE 203 (461)
Q Consensus 131 elE~~y-~~EqekL~~~Le~~ek~~~e~E~~lk~k------~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kE 203 (461)
.+|..- ..++..|-++|...-.+...+++-|.-- -+-|.+.-..-++.-.-++.+...+...=.+|=.++..=
T Consensus 1503 ~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a 1582 (1758)
T KOG0994|consen 1503 ALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEA 1582 (1758)
T ss_pred hccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344333 3445667776665555555555444211 122222222222222222222222222222344455555
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhh-hhhhhccHHHHHHHHhhhhhHHHHHHH
Q 012561 204 KETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHY-NTKLQKDIDAAHESIKRGEKEKSAIVE 282 (461)
Q Consensus 204 kEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQY-NSkLQaDl~~~~e~~~r~eKEK~tivE 282 (461)
..|...+-..+..-...|.+|+.+...+...+.+ +.+||-|.-+-++-- +-.+|.+++ -+..+|.=-+..+
T Consensus 1583 ~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~---a~q~~~eL~~~~e~lk~~~~qns~~-----A~~a~~~a~sa~~ 1654 (1758)
T KOG0994|consen 1583 QDAIQGADRDIRLAQQLLAKVQEETAAAEKLATS---ATQQLGELETRMEELKHKAAQNSAE-----AKQAEKTAGSAKE 1654 (1758)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhccHH-----HHHHHHHHHHHHH
Confidence 5566666666666667777887776666554433 334444443333311 222333332 2233333333333
Q ss_pred hhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHH
Q 012561 283 NLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEA 362 (461)
Q Consensus 283 nls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEe 362 (461)
....-++.++-||.++.... .+-+|.+.-++-..-| .+|+|+.=...+.|.+.-. -..+.||-
T Consensus 1655 ~A~~a~q~~~~lq~~~~~~~-----~l~~~r~~g~~~ar~r--Ae~L~~eA~~Ll~~a~~kl----------~~l~dLe~ 1717 (1758)
T KOG0994|consen 1655 QALSAEQGLEILQKYYELVD-----RLLEKRMEGSQAARER--AEQLRTEAEKLLGQANEKL----------DRLKDLEL 1717 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHhhcchhHHHH--HHHHHHHHHHHHHHHHHHH----------HHHHHHHH
Confidence 33334444444555443332 2333333333333333 3345544444444444322 23456777
Q ss_pred HHhhHHHHHHHHHHHHHHHHhhh
Q 012561 363 RCASQSNQIRSLSDQLAAAEEKL 385 (461)
Q Consensus 363 tCssQ~eqI~~Lq~QLa~A~eKL 385 (461)
++-.-..+|...+.+|+.-+..+
T Consensus 1718 ~y~~~~~~L~~~~aeL~~Le~r~ 1740 (1758)
T KOG0994|consen 1718 EYLRNEQALEDKAAELAGLEKRV 1740 (1758)
T ss_pred HHhhhhHHHHHHHHHhhhHHHHH
Confidence 77777777777777777665544
No 310
>PRK11519 tyrosine kinase; Provisional
Probab=50.38 E-value=2.5e+02 Score=31.53 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=13.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHh
Q 012561 211 ERSHASLSEDLGKAQEELQSANQRI 235 (461)
Q Consensus 211 E~~~~~LseeL~k~q~E~~~anqqi 235 (461)
.+...-|.++|..++.++..+..++
T Consensus 266 ~~a~~fL~~ql~~l~~~L~~aE~~l 290 (719)
T PRK11519 266 SKSLAFLAQQLPEVRSRLDVAENKL 290 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666666666555555443
No 311
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=50.37 E-value=4.7e+02 Score=30.47 Aligned_cols=224 Identities=18% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHH
Q 012561 203 EKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVE 282 (461)
Q Consensus 203 EkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivE 282 (461)
++-+++..++.+..+---.+.--.....+--.+..++ +++-.--++||--+-..+.+....--.+-.+-.||.-=.-
T Consensus 78 ~kr~el~~~k~~~i~~r~~~~~~dr~~~~~~~l~~~q---~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~a 154 (716)
T KOG4593|consen 78 HKRAELELTKAQSILARNYEAEVDRKHKLLTRLRQLQ---EALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLA 154 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhhhhHHHHHHHhHhh-HHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH----hhhhh
Q 012561 283 NLSTLRGQYISLQEQLSTYKAS-QDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE----LAVSS 357 (461)
Q Consensus 283 nls~LrG~~~SLq~QL~~skaS-q~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE----l~~k~ 357 (461)
.|.+||- +++++-+- |.+++-|+.++..==.|+-.+..++++++-+.--..+...+..+...+ .++-.
T Consensus 155 e~~~lr~-------k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a 227 (716)
T KOG4593|consen 155 ELGTLRN-------KLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQNA 227 (716)
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred hHHHHHHhh-HHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhhhhHHhHHhhhhhhhh
Q 012561 358 EDLEARCAS-QSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILE 436 (461)
Q Consensus 358 ~~LEetCss-Q~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~kiiEGEkLRKKLHNTILE 436 (461)
....-.-.+ |-+.|....+-=-.-.++|..+-.+..|.-.-.-+-...+..|++-+..-+.++-.-++|+-++-+-=||
T Consensus 228 ~~~~ql~~~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~~~l~~~~~~LELe 307 (716)
T KOG4593|consen 228 ELEQQLSLSEELEAINKNMKDQLQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGRLEKLQSTLLGLELE 307 (716)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
No 312
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=50.26 E-value=67 Score=35.63 Aligned_cols=68 Identities=12% Similarity=0.276 Sum_probs=40.6
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHhHhhHH----HHHHhhHHHHHHHHHHHHHHhh----------hhhhhhhhHHHHHH
Q 012561 277 KSAIVENLSTLRGQYISLQEQLSTYKASQD----EAMRQKDALVHEVASMRVELQQ----------VRDDRDHQLSQVQA 342 (461)
Q Consensus 277 K~tivEnls~LrG~~~SLq~QL~~skaSq~----Ea~kQK~~L~~Ev~~LR~ELqq----------vRdDRDr~~~Qvqs 342 (461)
+..+++....|=.+++.+-.+|...+...+ ..+.+-..|+.++..|=.++.+ .+|.||+.+.++..
T Consensus 141 R~~vl~~A~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~qIa~LN~qI~~~~~~g~~~ndLlDqRD~ll~eLS~ 220 (627)
T PRK06665 141 RQVVLERAQSLGERIHDRYRSLERIRDMANDEIEITVEEINNILRNIADLNEQIVKSQAMGDNPNDLLDRRDLLVDKLSS 220 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHh
Confidence 344455555554444444444444443333 3446667777777777777765 67888888877766
Q ss_pred HH
Q 012561 343 LT 344 (461)
Q Consensus 343 L~ 344 (461)
+.
T Consensus 221 ~v 222 (627)
T PRK06665 221 LI 222 (627)
T ss_pred hc
Confidence 54
No 313
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=50.08 E-value=1e+02 Score=26.93 Aligned_cols=35 Identities=20% Similarity=0.171 Sum_probs=25.0
Q ss_pred hHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHh
Q 012561 153 KCAEMELALRNKEEELNLIIVELRKSFASLQEKLA 187 (461)
Q Consensus 153 ~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~ 187 (461)
.+.+....+..+.++++.-|.+|......|+..+.
T Consensus 76 ~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 110 (127)
T TIGR02044 76 TSADVKARTLEKVAEIERKISELQSMRDQLEALAQ 110 (127)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566777788888888888888777776653
No 314
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=50.03 E-value=47 Score=28.42 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhh
Q 012561 315 LVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVS 356 (461)
Q Consensus 315 L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k 356 (461)
|+.+...|...|..-+++=|+.-..|.+|.+.+.+|.+|+.+
T Consensus 3 Li~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~Lnkk 44 (76)
T PF11544_consen 3 LIKQNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKK 44 (76)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666667788889999999999999996655
No 315
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=49.93 E-value=49 Score=29.06 Aligned_cols=37 Identities=24% Similarity=0.423 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHh
Q 012561 199 SLAREKETRLNMERSHASLSEDLGKAQEEL-QSANQRI 235 (461)
Q Consensus 199 s~~kEkEaR~~~E~~~~~LseeL~k~q~E~-~~anqqi 235 (461)
.+..|++.|..+|+....+..||+.+...+ ..||.-|
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MV 39 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEELTASLFEEANKMV 39 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999998887776 5555433
No 316
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=49.74 E-value=33 Score=40.10 Aligned_cols=55 Identities=13% Similarity=0.278 Sum_probs=26.0
Q ss_pred HHHHhhhhhhhhhhHHHHHHHHHHHHHhHH-------hhhhhhHHHHHHhhHHHHHHHHHHH
Q 012561 323 RVELQQVRDDRDHQLSQVQALTAEVIKHKE-------LAVSSEDLEARCASQSNQIRSLSDQ 377 (461)
Q Consensus 323 R~ELqqvRdDRDr~~~QvqsL~aE~~~ykE-------l~~k~~~LEetCssQ~eqI~~Lq~Q 377 (461)
|+-.+-++--=++--.||..|..++-.|+- +..|...+=++|--|-+-+.+++-+
T Consensus 893 rvnad~ikK~~~~m~~~ik~Le~dlk~~~~~~~e~dkF~ekM~~F~e~a~eq~~~ls~M~~~ 954 (1102)
T KOG1924|consen 893 RVNADEIKKNLQQMENQIKKLERDLKNFKIAGNEHDKFVEKMTSFHEKAREQYSKLSSMHGN 954 (1102)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444455555555555543 3444555555555555544444443
No 317
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=49.63 E-value=1.8e+02 Score=25.35 Aligned_cols=71 Identities=32% Similarity=0.466 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhHHHH----------HHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHH
Q 012561 170 LIIVELRKSFASLQEKLAKEESDKLAA----------LDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASIN 239 (461)
Q Consensus 170 ~~i~ELr~~~~SLqe~L~keeseKl~a----------~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slq 239 (461)
..|..+.....+++++|...+.+-+.+ +..+.++.++... ...++..|++++.+++..-++.+.++
T Consensus 3 ~~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~----~~~~~~~l~~~~~~lk~~r~~~~v~k 78 (106)
T PF05837_consen 3 LEILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE----DEELSEKLEKLEKELKKSRQRWRVMK 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc----chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666555544433 2223333332222 34588899999999999999999888
Q ss_pred HHHHH
Q 012561 240 DMYKL 244 (461)
Q Consensus 240 DmyKR 244 (461)
-++-.
T Consensus 79 ~v~q~ 83 (106)
T PF05837_consen 79 NVFQA 83 (106)
T ss_pred HHHHH
Confidence 77643
No 318
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=49.43 E-value=86 Score=33.41 Aligned_cols=33 Identities=15% Similarity=0.153 Sum_probs=15.8
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 012561 318 EVASMRVELQQVRDDRDHQLSQVQALTAEVIKH 350 (461)
Q Consensus 318 Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~y 350 (461)
+|..|+.+|+++++...+.-++..++.+.+.-.
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l 104 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAKFL 104 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455554444444444455555444333
No 319
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=49.14 E-value=21 Score=29.68 Aligned_cols=45 Identities=31% Similarity=0.514 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhhh
Q 012561 372 RSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIE 422 (461)
Q Consensus 372 ~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~kiiE 422 (461)
+.++..+..+=.||.+ =||.||+-|+..+..+..||+..|-+|-+
T Consensus 31 ~~~r~~l~~~l~kldl------VtREEFd~q~~~L~~~r~kl~~LEarl~~ 75 (79)
T PF04380_consen 31 KNIRARLQSALSKLDL------VTREEFDAQKAVLARTREKLEALEARLAA 75 (79)
T ss_pred HHHHHHHHHHHHHCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555544 37999999999999999999998888754
No 320
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=48.57 E-value=1.6e+02 Score=24.69 Aligned_cols=15 Identities=40% Similarity=0.645 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHhh
Q 012561 370 QIRSLSDQLAAAEEK 384 (461)
Q Consensus 370 qI~~Lq~QLa~A~eK 384 (461)
+|..++.++....++
T Consensus 82 ~i~~le~~~~~~e~~ 96 (108)
T PF02403_consen 82 EIKELEEQLKELEEE 96 (108)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 321
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=48.50 E-value=1.7e+02 Score=28.25 Aligned_cols=74 Identities=22% Similarity=0.351 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhHHHH-HHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhh
Q 012561 312 KDALVHEVASMRVELQQVRDDRDHQLSQV-QALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKL 385 (461)
Q Consensus 312 K~~L~~Ev~~LR~ELqqvRdDRDr~~~Qv-qsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKL 385 (461)
...|.+++..+|.+++.|--.|-++..++ ..|..=-.+++++..|.-++|..|..-..+|..|+.+....+.+.
T Consensus 145 ~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~~~ 219 (221)
T PF05700_consen 145 LKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKENQ 219 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44566777778888888766555443333 334444456777999999999999999999999999988777654
No 322
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=48.25 E-value=3.5e+02 Score=30.78 Aligned_cols=91 Identities=21% Similarity=0.300 Sum_probs=54.3
Q ss_pred HHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHH----HHhhHHHHH
Q 012561 242 YKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEA----MRQKDALVH 317 (461)
Q Consensus 242 yKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea----~kQK~~L~~ 317 (461)
-..|+.|=.+||.+.++=-.. -.+..+++....|=.+++++-.+|...+...+.. +.+-..|..
T Consensus 106 s~~L~~Ff~alq~la~~P~s~------------aaRq~vl~~A~~La~~fn~~~~~L~~l~~~vn~qI~~~V~~IN~l~~ 173 (676)
T PRK05683 106 SPALQRFFTALQTAAANPTDT------------AARQLLLTQAQGLSKRFNSLSSQLNQQNSNINSQLSAMTDQVNNLTT 173 (676)
T ss_pred HHHHHHHHHHHHHHHHCCCCH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666555433211 2345666666666666666666666655554443 345566666
Q ss_pred HHHHHHHHHhh----------hhhhhhhhHHHHHHHH
Q 012561 318 EVASMRVELQQ----------VRDDRDHQLSQVQALT 344 (461)
Q Consensus 318 Ev~~LR~ELqq----------vRdDRDr~~~QvqsL~ 344 (461)
++..|=.++.+ .+|.||+.+.++..+.
T Consensus 174 qIA~LN~qI~~~~~~G~~~NdLlDqRD~Ll~eLS~~v 210 (676)
T PRK05683 174 SIASYNKQIAQASASGATPNDLLDARDEAVRQLNELV 210 (676)
T ss_pred HHHHHHHHHHHhhcCCCCchHhHHHHHHHHHHHHhhc
Confidence 77777666653 5788888887776654
No 323
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=48.19 E-value=4.3e+02 Score=29.40 Aligned_cols=140 Identities=17% Similarity=0.228 Sum_probs=98.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhH
Q 012561 215 ASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISL 294 (461)
Q Consensus 215 ~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SL 294 (461)
+.|-++.-|.-..+..+..|+.-.|+.|+|. +..+.|.|++|-++.|-+-.||-..--|
T Consensus 328 dklaee~qr~sd~LE~lrlql~~eq~l~~rm---------------------~d~Lrrfq~ekeatqELieelrkelehl 386 (502)
T KOG0982|consen 328 DKLAEEDQRSSDLLEALRLQLICEQKLRVRM---------------------NDILRRFQEEKEATQELIEELRKELEHL 386 (502)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3455566666667777777777788877774 3456678888888888887777643333
Q ss_pred HHH-HHHh-----HhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh-HHhhhhhhHHHHHHh--
Q 012561 295 QEQ-LSTY-----KASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKH-KELAVSSEDLEARCA-- 365 (461)
Q Consensus 295 q~Q-L~~s-----kaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~y-kEl~~k~~~LEetCs-- 365 (461)
+.- |+.+ +.| .--..|-.||+.||-+=--+++-=+-.-+|+-+|.+-..+- --+..+.+.|=.-|.
T Consensus 387 r~~kl~~a~p~rgrsS-----aRe~eleqevkrLrq~nr~l~eqneelngtilTls~q~lkn~ha~~~~~~Slaaeid~~ 461 (502)
T KOG0982|consen 387 RRRKLVLANPVRGRSS-----AREIELEQEVKRLRQPNRILSEQNEELNGTILTLSTQFLKNWHATFSLFFSLAAEIDEM 461 (502)
T ss_pred HHHHHHhhccccCchh-----HHHHHHHHHHHHhccccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 321 1221 222 23346778999999888888888888888888888766554 447778888888898
Q ss_pred hHHHHHHHHHHHHHH
Q 012561 366 SQSNQIRSLSDQLAA 380 (461)
Q Consensus 366 sQ~eqI~~Lq~QLa~ 380 (461)
||.+-..++|.|-..
T Consensus 462 sqdeLmqafqeqeei 476 (502)
T KOG0982|consen 462 SQDELMQAFQEQEEI 476 (502)
T ss_pred hHHHHHHHHHHHHHh
Confidence 899988888887543
No 324
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=48.12 E-value=2.8e+02 Score=27.32 Aligned_cols=30 Identities=10% Similarity=0.233 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q 012561 216 SLSEDLGKAQEELQSANQRIASINDMYKLL 245 (461)
Q Consensus 216 ~LseeL~k~q~E~~~anqqi~slqDmyKRL 245 (461)
....++.....++..+..++..+++-+.++
T Consensus 132 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~ 161 (301)
T PF14362_consen 132 SFDAQIARLDAEIAALQAEIDQLEKEIDRA 161 (301)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666666655544
No 325
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=47.94 E-value=1.5e+02 Score=24.21 Aligned_cols=69 Identities=23% Similarity=0.233 Sum_probs=43.9
Q ss_pred hhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhh-hhhhhhhHHHHHHHHHHHHHhHH
Q 012561 284 LSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQV-RDDRDHQLSQVQALTAEVIKHKE 352 (461)
Q Consensus 284 ls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqv-RdDRDr~~~QvqsL~aE~~~ykE 352 (461)
++.|......+..++...+.||.+-+.+-+.+..++..+..-.+.. ==|.+.+..-+..+..++....+
T Consensus 9 ~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~ 78 (92)
T PF14712_consen 9 LSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHE 78 (92)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHH
Confidence 5667888888999999999999887777776666665555433222 11333455555555555555444
No 326
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=47.58 E-value=1.1e+02 Score=28.88 Aligned_cols=56 Identities=11% Similarity=0.188 Sum_probs=47.7
Q ss_pred hhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhh-hhhhHHHHH
Q 012561 286 TLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDD-RDHQLSQVQ 341 (461)
Q Consensus 286 ~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdD-RDr~~~Qvq 341 (461)
.|........+.|+.+.....+|-..+.....++..-|.|.++++.+ ||+..++..
T Consensus 38 iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~ 94 (155)
T PRK06569 38 IFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFL 94 (155)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667788999999999999999999999999999999999999 998766543
No 327
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=47.56 E-value=64 Score=24.70 Aligned_cols=46 Identities=35% Similarity=0.432 Sum_probs=38.7
Q ss_pred HHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhh
Q 012561 376 DQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLI 421 (461)
Q Consensus 376 ~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~kii 421 (461)
.+|...=.+|.--|+|..+....|++=..++...+.+|.+||.+|-
T Consensus 6 ~~Le~Iv~~Le~~~~sLdes~~lyeeg~~l~~~c~~~L~~~e~~i~ 51 (53)
T PF02609_consen 6 ERLEEIVEKLESGELSLDESLKLYEEGMELIKKCQERLEEAEQKIE 51 (53)
T ss_dssp HHHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566788899999999999999999999999999999999874
No 328
>PRK06799 flgK flagellar hook-associated protein FlgK; Validated
Probab=47.48 E-value=1.8e+02 Score=30.80 Aligned_cols=92 Identities=13% Similarity=0.251 Sum_probs=51.1
Q ss_pred HHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhh----HHHHHHhhHHHH
Q 012561 241 MYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKAS----QDEAMRQKDALV 316 (461)
Q Consensus 241 myKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaS----q~Ea~kQK~~L~ 316 (461)
+..+|..|=.|+|.+.+.=.... .+..+++....|=.+++.+-.+|...+.. .+..+.+-..+.
T Consensus 110 l~~~l~~ff~a~~~ls~~P~~~~------------~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll 177 (431)
T PRK06799 110 LSSLMDGFFNAFREVAKNPEQAN------------YYDTLISETGKFTSQLNRLAKGLDELEAQTTEDIEAHVNEFNRLA 177 (431)
T ss_pred hHHHHHHHHHHHHHHHhCcCCHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556665544332221 24455555555555555555555444433 333455666677
Q ss_pred HHHHHHHHHHh--------hhhhhhhhhHHHHHHHH
Q 012561 317 HEVASMRVELQ--------QVRDDRDHQLSQVQALT 344 (461)
Q Consensus 317 ~Ev~~LR~ELq--------qvRdDRDr~~~QvqsL~ 344 (461)
.++..|=.++. ..+|.||+.+.++..+.
T Consensus 178 ~~Ia~LN~~I~~~~~~~~ndL~DqRD~ll~eLS~~i 213 (431)
T PRK06799 178 KSLAEANKKIGQAGTQVPNQLLDERDRILTEMSKYA 213 (431)
T ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHhhc
Confidence 77777766664 46788888877776653
No 329
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=47.44 E-value=31 Score=37.82 Aligned_cols=180 Identities=18% Similarity=0.270 Sum_probs=25.5
Q ss_pred hccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHH-HHHHHHHHHHHhhhhhhhhhhHH
Q 012561 260 QKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDAL-VHEVASMRVELQQVRDDRDHQLS 338 (461)
Q Consensus 260 QaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L-~~Ev~~LR~ELqqvRdDRDr~~~ 338 (461)
...++.....+..++.+|..-.+.+..|+.....|=+.|+.....++.-+..-..+ ..=+..++.||++...-|...+.
T Consensus 206 ~~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~~LW~~L~~~~ee~~~F~~~~~~ls~~~i~~l~~El~RL~~lK~~~lk 285 (619)
T PF03999_consen 206 DENLEKLQELLQELEEEKEEREEKLQELREKIEELWNRLDVPEEEREAFLEENSGLSLDTIEALEEELERLEELKKQNLK 285 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45666777788888999999999999999999999999987766666444433332 34467788888888888888777
Q ss_pred HH-HHHHHHHHHhHH--------hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHH
Q 012561 339 QV-QALTAEVIKHKE--------LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINEL 409 (461)
Q Consensus 339 Qv-qsL~aE~~~ykE--------l~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eL 409 (461)
.+ ..+-.||..|-+ -..-+..+.+.++ .+-+..++.+++..++.... --..++-...|++--....+|
T Consensus 286 ~~I~~~R~ei~elWd~~~~s~eer~~F~~~~~d~~~--E~lL~~hE~Ei~~Lk~~~~~-~k~Il~~v~k~~~l~~~~~~L 362 (619)
T PF03999_consen 286 EFIEKKRQEIEELWDKCHYSEEERQAFTPFYIDSYT--EELLELHEEEIERLKEEYES-RKPILELVEKWESLWEEMEEL 362 (619)
T ss_dssp ---------------------------------------------------HHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccch--HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 64 777888887777 1122333444444 22234444444444333221 112223333333333333333
Q ss_pred HH------hHHHHhhhhhhhHHhHHhhhhhh----hhhcccce
Q 012561 410 RN------HLEDAEYKLIEGEKLRKRLHNTI----LELEVNLS 442 (461)
Q Consensus 410 q~------RLadaE~kiiEGEkLRKKLHNTI----LELKGNIR 442 (461)
+. ||---=-.|+.-|+.||++.+.+ -+|+.-|.
T Consensus 363 e~~~~D~~Rl~~RGg~LLkEEk~rk~i~k~lPkle~~L~~~l~ 405 (619)
T PF03999_consen 363 EESSKDPSRLNNRGGHLLKEEKERKRIQKKLPKLEEELKKKLE 405 (619)
T ss_dssp HHHHH-CCGG------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcChhhhcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 32 22221234677789999888764 44444443
No 330
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=47.43 E-value=2.9e+02 Score=27.16 Aligned_cols=176 Identities=20% Similarity=0.262 Sum_probs=89.1
Q ss_pred HHHHHHHhhhhhccCCCChHHhhHhHHHHHHHHH-HHHHHHHHhhhhh---HHH--HHHHHHHHHHHHhhHHHHHHHHHc
Q 012561 90 EDVEALLSEKMRYKNKFNYKERCENMMDYIKRLR-LCIKWFQELEGDY---AFE--HERLRNALELSEQKCAEMELALRN 163 (461)
Q Consensus 90 edVeALLnEKmk~k~KfdyKgr~EqM~dyIKrLr-~CIrWfqelE~~y---~~E--qekL~~~Le~~ek~~~e~E~~lk~ 163 (461)
+||...+.||+ +==-+|-|+|+ +|=+||.-++.+. .+. -..+.++.+..=..|..+-..|..
T Consensus 22 ~el~~f~kERa------------~IE~~Yak~L~kLakk~~~~~~~~~e~gsl~~aw~~~~~e~e~~a~~H~~l~~~L~~ 89 (258)
T cd07655 22 DDLMKMVQERA------------EIEKAYAKKLKEWAKKWRDLIEKGPEYGTLETAWKGLLSEAERLSELHLSIRDKLLN 89 (258)
T ss_pred HHHHHHHHHHH------------HHHHHHHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55655555554 44457888885 5667887664322 121 134455555555566666666655
Q ss_pred hHHH-HHHHHHHH--------HHHHHHHHHHHhHHH-----------hhHHHHHHhhHHHHHHHHHHHHHH--hhh-HHH
Q 012561 164 KEEE-LNLIIVEL--------RKSFASLQEKLAKEE-----------SDKLAALDSLAREKETRLNMERSH--ASL-SED 220 (461)
Q Consensus 164 k~eE-L~~~i~EL--------r~~~~SLqe~L~kee-----------seKl~a~~s~~kEkEaR~~~E~~~--~~L-see 220 (461)
.+.+ +.....+. -+..-.+++.+.+.. -.|-.=-..-..+..|+.....+. .++ ..+
T Consensus 90 ~v~~~i~~~~~e~~~k~~~~~~ke~K~~e~~~~kaqk~~~~~~~~l~kaKk~Y~~~cke~e~a~~~~~~~~~d~~~~~~e 169 (258)
T cd07655 90 DVVEEVKTWQKENYHKSMMGGFKETKEAEDGFAKAQKPWAKLLKKVEKAKKAYHAACKAEKSAQKQENNAKSDTSLSPDQ 169 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCCHHH
Confidence 5442 33332221 111222333333322 222211111122233344333333 233 378
Q ss_pred HHHHHHHHHHHHHHhHhHHHHH-HHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHH
Q 012561 221 LGKAQEELQSANQRIASINDMY-KLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIV 281 (461)
Q Consensus 221 L~k~q~E~~~anqqi~slqDmy-KRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tiv 281 (461)
|+|++..+..+.+.+....+-| ..|+.+|..-+ .-..|...+=+.+-.++.+.-.++
T Consensus 170 leK~~~k~~k~~~~~~~~~~~Y~~~l~~~n~~~~----~y~~~m~~~~~~~Q~lEe~Ri~~l 227 (258)
T cd07655 170 VKKLQDKVEKCKQEVSKTKDKYEKALEDLNKYNP----RYMEDMEQVFDKCQEFEEKRLDFF 227 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888877765544333 23444444333 445567777777777777765544
No 331
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=46.97 E-value=2.3e+02 Score=30.30 Aligned_cols=41 Identities=15% Similarity=0.153 Sum_probs=27.1
Q ss_pred hhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhh
Q 012561 292 ISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDD 332 (461)
Q Consensus 292 ~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdD 332 (461)
..+..|+........+...+...+..++..|+.+|..+...
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~ 174 (525)
T TIGR02231 134 DFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLTG 174 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 33444555555555666777777788888888888777654
No 332
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=46.71 E-value=93 Score=28.35 Aligned_cols=62 Identities=21% Similarity=0.341 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHH
Q 012561 313 DALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLS 375 (461)
Q Consensus 313 ~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq 375 (461)
.++-.|+..|+.+|..++.+-...-+++.+|.+.... .||...+..|+..|..-..++..|+
T Consensus 75 ~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~-~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 75 AELDAEIKELREELAELKKEVKSLEAELASLSSEPTN-EELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667788888887776655555555555544432 1256666666665444444444333
No 333
>PRK12765 flagellar capping protein; Provisional
Probab=46.64 E-value=79 Score=35.05 Aligned_cols=81 Identities=15% Similarity=0.157 Sum_probs=69.7
Q ss_pred HHhhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhH
Q 012561 109 KERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAK 188 (461)
Q Consensus 109 Kgr~EqM~dyIKrLr~CIrWfqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~k 188 (461)
.|...+|.++++.+=--=--+.-++++|-.++.+|..+++..+.+....+..|+.+.--|..++..|....++|...|.-
T Consensus 510 ~G~~~~l~~~l~~~~~~~G~l~~~~~~l~~~~~~l~~~~~~~~~rl~~~~~r~~~qf~alD~~i~~l~~t~s~l~~~~~~ 589 (595)
T PRK12765 510 KGIFSKLKDTLQEMTGKDGSLTKYDESLTNEIKSLTTSKESTQELIDTKYETMANKWLQYDSIIAKLEQQFSTLKNMINA 589 (595)
T ss_pred ccHHHHHHHHHHHHhCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 47888888888765432234567889999999999999999999999999999999999999999999999999988865
Q ss_pred H
Q 012561 189 E 189 (461)
Q Consensus 189 e 189 (461)
+
T Consensus 590 ~ 590 (595)
T PRK12765 590 A 590 (595)
T ss_pred H
Confidence 3
No 334
>PRK08453 fliD flagellar capping protein; Validated
Probab=46.50 E-value=74 Score=36.16 Aligned_cols=103 Identities=7% Similarity=0.079 Sum_probs=45.3
Q ss_pred CCCcccccHHHHHHHHhhhhhc-------cCCCChHHhhHhHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHh
Q 012561 81 ECGTIEFTREDVEALLSEKMRY-------KNKFNYKERCENMMDYIKRLRLCIKWFQE-LEGDYAFEHERLRNALELSEQ 152 (461)
Q Consensus 81 e~~~ieFtredVeALLnEKmk~-------k~KfdyKgr~EqM~dyIKrLr~CIrWfqe-lE~~y~~EqekL~~~Le~~ek 152 (461)
..|.++|-.+-.++-|.+...+ .+.++-.|+-...-.|..||.-.|.=|.. -......-++-|..++...+.
T Consensus 556 ~dG~L~iDe~kL~~AL~~npd~V~~lF~g~~~~~~~g~~~~~~Gi~~rl~~~L~~~i~g~~G~l~~~~~sL~~q~k~L~~ 635 (673)
T PRK08453 556 EKGVMTLDEAKLSSALNSDPKATQDFFYGSDSKDMGGREIHQEGIFSKFNQVIANLIDGGNAKLKIYEDSLTRDAKSLTK 635 (673)
T ss_pred CCCcEEEcHHHHHHHHHHCHHHHHHHhcCCCcccccccccccCcHHHHHHHHHHHHhcCCCceehhHHHHHHHHHHHHHH
Confidence 4577777654444444443332 11111123333344566666666655432 122222233344555544444
Q ss_pred hHHHHHHHHHchHHHHHHHHHHHHHHHHHHH
Q 012561 153 KCAEMELALRNKEEELNLIIVELRKSFASLQ 183 (461)
Q Consensus 153 ~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLq 183 (461)
+...++..|..+++-+.+...-|-..++.|.
T Consensus 636 q~~~~e~rL~~ry~rl~~qFsAmDs~IsqmN 666 (673)
T PRK08453 636 DKENAQELLKTRYDIMAERFAAYDSQISKAN 666 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433333333333333
No 335
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.50 E-value=1.7e+02 Score=25.18 Aligned_cols=71 Identities=23% Similarity=0.222 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhh
Q 012561 220 DLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQ 290 (461)
Q Consensus 220 eL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~ 290 (461)
=++++..-++.|-+-|+-||=-..-|.|-|.||+|--+.+|..-+...-....+..|-+.-.|-|..|=|.
T Consensus 5 v~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGk 75 (79)
T COG3074 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGK 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46777778888888898888888889999999999888777766666666666777777777777777764
No 336
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=46.48 E-value=74 Score=30.49 Aligned_cols=56 Identities=27% Similarity=0.305 Sum_probs=26.3
Q ss_pred HHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhh
Q 012561 233 QRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLR 288 (461)
Q Consensus 233 qqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~Lr 288 (461)
|++.+.....+.++..|..|+..+..||.-.......+.+++++..+|-|--.+|-
T Consensus 90 q~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~ 145 (161)
T TIGR02894 90 QNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLI 145 (161)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444333344444444444444444444444444445555555555555444443
No 337
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=46.47 E-value=4.6e+02 Score=29.32 Aligned_cols=129 Identities=22% Similarity=0.283 Sum_probs=76.8
Q ss_pred HHHHchHHHHHH---HHHHHHHHHHHHHHHHhHHHhhHHHHHHhhH---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 012561 159 LALRNKEEELNL---IIVELRKSFASLQEKLAKEESDKLAALDSLA---REKETRLNMERSHASLSEDLGKAQEELQSAN 232 (461)
Q Consensus 159 ~~lk~k~eEL~~---~i~ELr~~~~SLqe~L~keeseKl~a~~s~~---kEkEaR~~~E~~~~~LseeL~k~q~E~~~an 232 (461)
..|-++.|.|.- .+.+|++.+..-+++-..+..||++.=+-+. +=+|-|..+|-.+.. .||+-++.++..|.
T Consensus 245 ~km~kdle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~r--kelE~lR~~L~kAE 322 (575)
T KOG4403|consen 245 NKMMKDLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSR--KELEQLRVALEKAE 322 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHH--HHHHHHHHHHHHHH
Confidence 344444554432 2344555555555555555666776543332 112334444433322 46777777777776
Q ss_pred HHhHhH------HHHHHHHHH-HHhHHHhhhhhhhc---cHHHHHHHHhhhhhHHHHHHHhhhhhhh
Q 012561 233 QRIASI------NDMYKLLQE-YNSSLQHYNTKLQK---DIDAAHESIKRGEKEKSAIVENLSTLRG 289 (461)
Q Consensus 233 qqi~sl------qDmyKRLQE-YNTSLQQYNSkLQa---Dl~~~~e~~~r~eKEK~tivEnls~LrG 289 (461)
..+... .-+-|-||- |---.|-||-|=|. .+-.|.|...|++|-.++++.++----|
T Consensus 323 kele~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkKKrssv~gtl~vahg 389 (575)
T KOG4403|consen 323 KELEANSSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKRSSVFGTLHVAHG 389 (575)
T ss_pred HHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcchheeeeeccc
Confidence 666543 234455552 44567888887774 5778999999999999999988776655
No 338
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=45.20 E-value=1.8e+02 Score=25.29 Aligned_cols=70 Identities=20% Similarity=0.279 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhh
Q 012561 314 ALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEV 387 (461)
Q Consensus 314 ~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~ 387 (461)
.+..+...++.+|..|+.+|.+.-.+-+.|..|+-...+ +...-.+ ....+.+|..++..|-.+..+-.+
T Consensus 7 ~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~---~~~~~~~-~~~~~~~l~~~~~~lk~~r~~~~v 76 (106)
T PF05837_consen 7 NLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAE---KQKSQRE-DEELSEKLEKLEKELKKSRQRWRV 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhhhhcc-chHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677778888888888888888888888877776555 1111111 445556677777777666655443
No 339
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=43.52 E-value=23 Score=30.19 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=15.4
Q ss_pred hHhHHHHHHHHHHHHhHHHhhhhhhhccHHHH
Q 012561 235 IASINDMYKLLQEYNSSLQHYNTKLQKDIDAA 266 (461)
Q Consensus 235 i~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~ 266 (461)
|..|.+.|.+|+.-|..|+.-+..|+..+...
T Consensus 27 l~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~ 58 (131)
T PF05103_consen 27 LDELAEELERLQRENAELKEEIEELQAQLEEL 58 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 34445555555555555555555555555444
No 340
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=43.48 E-value=3.2e+02 Score=26.54 Aligned_cols=102 Identities=20% Similarity=0.285 Sum_probs=75.1
Q ss_pred HHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhh
Q 012561 308 AMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEV 387 (461)
Q Consensus 308 a~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~ 387 (461)
++.=|..++..+..==.|.+.|=++-...+.+.+.=- +.-......-..++.+|..-|..++..+..
T Consensus 61 aL~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na-------------~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~ 127 (188)
T PF05335_consen 61 ALAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANA-------------QAAQRAAQQAQQQLETLKAALKAAQANLAN 127 (188)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777666555555555555445554443321 122233444556899999999999999999
Q ss_pred hchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhhh
Q 012561 388 SDLSALETKTEFEGQKKLINELRNHLEDAEYKLIE 422 (461)
Q Consensus 388 aDlsa~etrte~E~Qk~~i~eLq~RLadaE~kiiE 422 (461)
++-.+.....++.++..+++.-+.|+.....+|.+
T Consensus 128 a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~ 162 (188)
T PF05335_consen 128 AEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQA 162 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999997777765
No 341
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=43.24 E-value=2.7e+02 Score=26.52 Aligned_cols=89 Identities=21% Similarity=0.302 Sum_probs=39.4
Q ss_pred hHhHHHHHHHHHHHHhHHHhhhhh-hhcc--HHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHh
Q 012561 235 IASINDMYKLLQEYNSSLQHYNTK-LQKD--IDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQ 311 (461)
Q Consensus 235 i~slqDmyKRLQEYNTSLQQYNSk-LQaD--l~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQ 311 (461)
+.++-+-|..| |.+|......+ |++. ...-...++.+++++..+-.-+..|+-+...++...+-.+.. .
T Consensus 93 ~~~~l~~y~~l--~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~------~ 164 (189)
T PF10211_consen 93 YRMTLDAYQTL--YESSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQE------E 164 (189)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H
Confidence 44444556555 44444432222 2221 122334455555555555555444444443333322222221 1
Q ss_pred hHHHHHHHHHHHHHHhhhhh
Q 012561 312 KDALVHEVASMRVELQQVRD 331 (461)
Q Consensus 312 K~~L~~Ev~~LR~ELqqvRd 331 (461)
.+...+||..|+..-+|+++
T Consensus 165 ~k~~~~ei~~lk~~~~ql~~ 184 (189)
T PF10211_consen 165 EKKHQEEIDFLKKQNQQLKA 184 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 23345666666666666554
No 342
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=43.21 E-value=65 Score=24.63 Aligned_cols=16 Identities=19% Similarity=0.428 Sum_probs=6.4
Q ss_pred HhhHHHHHHHHHHHHH
Q 012561 310 RQKDALVHEVASMRVE 325 (461)
Q Consensus 310 kQK~~L~~Ev~~LR~E 325 (461)
++++.|..||..|.+.
T Consensus 26 ~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 26 KENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3334444444444433
No 343
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=43.14 E-value=92 Score=26.61 Aligned_cols=47 Identities=21% Similarity=0.356 Sum_probs=39.7
Q ss_pred HhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhh
Q 012561 214 HASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQ 260 (461)
Q Consensus 214 ~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQ 260 (461)
++.|-.+.--+|..+..+-++|..+.+-+..|..=|.-||+|=.+|=
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm 64 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLM 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555677778888889999999999999999999999999988873
No 344
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=42.81 E-value=3.5e+02 Score=26.79 Aligned_cols=164 Identities=18% Similarity=0.282 Sum_probs=83.5
Q ss_pred HHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHH-HHHHHHHHHhhhHH------------HH
Q 012561 155 AEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKE-TRLNMERSHASLSE------------DL 221 (461)
Q Consensus 155 ~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkE-aR~~~E~~~~~Lse------------eL 221 (461)
.+....|..|+.|-..-..+.+.-+..|+..|.+-- ...+.|-.+++|-= +-..+-++.+.|+. .|
T Consensus 7 ~~~~~~~~~k~~E~D~~F~~~k~yi~~Le~~Lk~l~-k~~~~lv~~rkela~~~~efa~s~~~L~~~E~~~~ls~~l~~l 85 (234)
T cd07664 7 ADAVNKMTIKMNESDAWFEEKQQQFENLDQQLRKLH-ASVESLVCHRKELSANTAAFAKSAAMLGNSEDHTALSRALSQL 85 (234)
T ss_pred HHHHHhccccccCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccchHHHHHHHH
Confidence 344445566666666666666666666666665432 23444444444431 22233333344433 33
Q ss_pred HHHHHHHHHHHHHhHhHHHHHH---HHHHHHh--------------HHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhh
Q 012561 222 GKAQEELQSANQRIASINDMYK---LLQEYNS--------------SLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENL 284 (461)
Q Consensus 222 ~k~q~E~~~anqqi~slqDmyK---RLQEYNT--------------SLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnl 284 (461)
+.++.-+....+ -.+.+|++. -|-||.. .+|+|+ +.+.+|.+..+...|+..
T Consensus 86 aev~~ki~~~~~-~qa~~d~~~l~e~L~eYiR~i~svK~~f~~R~k~~~~~~-~a~~~L~kkr~~~~Kl~~--------- 154 (234)
T cd07664 86 AEVEEKIDQLHQ-DQAFADFYLFSELLGDYIRLIAAVKGVFDQRMKCWQKWQ-DAQVTLQKKREAEAKLQY--------- 154 (234)
T ss_pred HHHHHHHHHHHH-HHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhh---------
Confidence 333333333322 222333322 3455544 345555 566666666655555421
Q ss_pred hhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhh
Q 012561 285 STLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDR 333 (461)
Q Consensus 285 s~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDR 333 (461)
++=-++...++..+..+.....+|.+.-+.+. ...|.||.+...+|
T Consensus 155 ~~k~dK~~~~~~ev~~~e~~~~~a~~~fe~Is---~~~k~El~rFe~er 200 (234)
T cd07664 155 ANKPDKLQQAKDEIKEWEAKVQQGERDFEQIS---KTIRKEVGRFEKER 200 (234)
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 11024566677777777777777776555543 45677777665444
No 345
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=42.16 E-value=6.3e+02 Score=29.64 Aligned_cols=189 Identities=22% Similarity=0.330 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHHHhH--------hHHHHHHHHHHHHhHHHhh---hhhhhccHHH-------HHHHHhhhhhHHHHHH
Q 012561 220 DLGKAQEELQSANQRIA--------SINDMYKLLQEYNSSLQHY---NTKLQKDIDA-------AHESIKRGEKEKSAIV 281 (461)
Q Consensus 220 eL~k~q~E~~~anqqi~--------slqDmyKRLQEYNTSLQQY---NSkLQaDl~~-------~~e~~~r~eKEK~tiv 281 (461)
.++++..+++..++.+. .+.|+---|----+|=|.| +-.|-+|++. -...+.+++-||.+|.
T Consensus 426 ~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~la 505 (786)
T PF05483_consen 426 QFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLA 505 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667776666654 2344443333223333333 3345666664 1235667778888888
Q ss_pred HhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH---HHHHHHhHH-----h
Q 012561 282 ENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQAL---TAEVIKHKE-----L 353 (461)
Q Consensus 282 Enls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL---~aE~~~ykE-----l 353 (461)
---+.+--..+.+|.++.-++.--.-.++|-+.|-.+=..||.+|-.||++=-+...+|... +.+++...+ .
T Consensus 506 QE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k 585 (786)
T PF05483_consen 506 QETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKK 585 (786)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhh
Confidence 77776666677789999999888777788877665555555555555555555555555542 123333222 1
Q ss_pred hhhhhHHHHHHhhHHHH-------H-------HHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHH
Q 012561 354 AVSSEDLEARCASQSNQ-------I-------RSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINE 408 (461)
Q Consensus 354 ~~k~~~LEetCssQ~eq-------I-------~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~e 408 (461)
--....||..|..-+.| | +.|..|.++...++.+.++-..--.-|.+.-++...+
T Consensus 586 ~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE 654 (786)
T PF05483_consen 586 EKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEE 654 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 12233444455433332 3 3455566666666666665555555555555554333
No 346
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=42.13 E-value=1.5e+02 Score=24.86 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=12.1
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHhHhhHH
Q 012561 279 AIVENLSTLRGQYISLQEQLSTYKASQD 306 (461)
Q Consensus 279 tivEnls~LrG~~~SLq~QL~~skaSq~ 306 (461)
..|+.+-.|-....+++.+++..++-++
T Consensus 26 ~~vd~i~~ld~~~r~l~~~~e~lr~~rN 53 (108)
T PF02403_consen 26 EDVDEIIELDQERRELQQELEELRAERN 53 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444333
No 347
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=42.00 E-value=3.1e+02 Score=25.99 Aligned_cols=95 Identities=23% Similarity=0.312 Sum_probs=75.6
Q ss_pred HHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhh--------HH
Q 012561 267 HESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQ--------LS 338 (461)
Q Consensus 267 ~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~--------~~ 338 (461)
..+++-++.=|..|.+-.-+-|..+..|+..|.--|.--.+.|.+-|.|...-...|..|-.|.-+=+++ +.
T Consensus 5 ~~ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe 84 (159)
T PF05384_consen 5 KKTIDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYE 84 (159)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHH
Confidence 4577888899999999999999999999999999999999999999999999999999998887766654 34
Q ss_pred HHHHHHHHHHHhHH----hhhhhhHHH
Q 012561 339 QVQALTAEVIKHKE----LAVSSEDLE 361 (461)
Q Consensus 339 QvqsL~aE~~~ykE----l~~k~~~LE 361 (461)
+++.+.-++..+++ |..+-+.||
T Consensus 85 ~A~~lQ~~L~~~re~E~qLr~rRD~LE 111 (159)
T PF05384_consen 85 EAHELQVRLAMLREREKQLRERRDELE 111 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666665 444444444
No 348
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=41.95 E-value=2.3e+02 Score=24.43 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHH
Q 012561 204 KETRLNMERSHASLSEDLGKAQEELQSANQRIASINDM 241 (461)
Q Consensus 204 kEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDm 241 (461)
.||..-.++-...|.+.+++++..+...++++..+.+.
T Consensus 85 ~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~ 122 (126)
T TIGR00293 85 EEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQE 122 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666677777777777777777777777777776654
No 349
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=41.65 E-value=3.4e+02 Score=26.43 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHhhhh
Q 012561 371 IRSLSDQLAAAEEKLE 386 (461)
Q Consensus 371 I~~Lq~QLa~A~eKLk 386 (461)
|..++.++..++..|.
T Consensus 188 i~~~~~~l~~a~~~l~ 203 (334)
T TIGR00998 188 VQEAKERLKTAWLALK 203 (334)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3444444444444443
No 350
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=41.45 E-value=5.2e+02 Score=28.43 Aligned_cols=145 Identities=20% Similarity=0.257 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 012561 167 ELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQ 246 (461)
Q Consensus 167 EL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQ 246 (461)
-+++.=-+++.-|..||++- -+.+... .+-+..++||...+.-...+|+-|+-.+.-
T Consensus 133 ~~~~~~~~~~~~~q~lq~~~--------~~~er~~----------~~y~~~~qElq~k~t~~~afn~tikife~q----- 189 (464)
T KOG4637|consen 133 NINAVGKKLREYHQQLQEKS--------LEYERLY----------EEYTRTSQELQMKRTAIEAFNETIKIFEEQ----- 189 (464)
T ss_pred chhhhhHHHHHHHHHHHHHH--------HHHHHHH----------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-----
Confidence 34555556677777776531 1111111 223455667777766666777666554432
Q ss_pred HHHhHHHhhhhhhhccHHHHHHH---HhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhh---------H-
Q 012561 247 EYNSSLQHYNTKLQKDIDAAHES---IKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQK---------D- 313 (461)
Q Consensus 247 EYNTSLQQYNSkLQaDl~~~~e~---~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK---------~- 313 (461)
++--|+-+-+.++...-. ..-.+|++.+|+-|-.-|+.......+-|..++....--+..+ +
T Consensus 190 -----~~~~e~~~ka~~d~~~~eqG~qg~~e~~~~~~a~N~~~~ks~i~ei~~sl~~l~d~lk~~~q~~~~~~enr~~e~ 264 (464)
T KOG4637|consen 190 -----CGTQENLSKAYIDRFRREQGSQGNSEKEIGRIANNYDKLKSRIREIHDSLTRLEDDLKALIQALRSNSENRLCEL 264 (464)
T ss_pred -----HHHHHHHHHHHHhHHHHHhccCCchHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHH
Confidence 222233333333333211 1334788888888877776654444444443333333211111 2
Q ss_pred -HHHHHHHHHHHHHhhhhhhhhhhHHH
Q 012561 314 -ALVHEVASMRVELQQVRDDRDHQLSQ 339 (461)
Q Consensus 314 -~L~~Ev~~LR~ELqqvRdDRDr~~~Q 339 (461)
.|.+-+.+|.-+|+|.|--||+++.-
T Consensus 265 m~l~k~~nslkp~l~~lr~~~d~y~~~ 291 (464)
T KOG4637|consen 265 MELDKAMNSLKPDLIQLRKIRDQYLVW 291 (464)
T ss_pred HHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence 36667889999999999999998753
No 351
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=41.11 E-value=1.2e+02 Score=31.52 Aligned_cols=85 Identities=25% Similarity=0.350 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHhHHHhhhhhhh------------ccHHHHHHHHhhhhhH-HHHHHHhhhhhhhhhhhHHHHHHHhH
Q 012561 236 ASINDMYKLLQEYNSSLQHYNTKLQ------------KDIDAAHESIKRGEKE-KSAIVENLSTLRGQYISLQEQLSTYK 302 (461)
Q Consensus 236 ~slqDmyKRLQEYNTSLQQYNSkLQ------------aDl~~~~e~~~r~eKE-K~tivEnls~LrG~~~SLq~QL~~sk 302 (461)
..+..+|||-.++. ||..||-=|. .|.....+.+.+-+++ |..|.+|-....-...++..++...+
T Consensus 77 rv~~i~Nk~e~dF~-~l~~yNdYLE~vEdii~nL~~~~d~~~te~~l~~y~~~n~~~I~~n~~~~~~e~~~~~~~~~~E~ 155 (309)
T TIGR00570 77 RVLKIYNKREEDFP-SLREYNDYLEEVEDIVYNLTNNIDLENTKKKIETYQKENKDVIQKNKEKSTREQEELEEALEFEK 155 (309)
T ss_pred HHHHHHccchhccC-CHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q ss_pred hhHHH---------------HHHhhHHHHHHHHH
Q 012561 303 ASQDE---------------AMRQKDALVHEVAS 321 (461)
Q Consensus 303 aSq~E---------------a~kQK~~L~~Ev~~ 321 (461)
..-.. ..+.|.+++++++.
T Consensus 156 ~~~~~rr~~~~~~e~ee~~~~~~~~~~~ld~L~~ 189 (309)
T TIGR00570 156 EEEEQRRLLLQKEEEEQQMNKRKNKQALLDELET 189 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 352
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=40.86 E-value=2.3e+02 Score=24.82 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHh
Q 012561 152 QKCAEMELALRNKEEELNLIIVELRKSFASLQEKLA 187 (461)
Q Consensus 152 k~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~ 187 (461)
..|.+.-..+..++++++.-|.+|......|++.+.
T Consensus 72 ~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 107 (124)
T TIGR02051 72 THCREMYELASRKLKSVQAKMADLLRIERLLEELLE 107 (124)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777888888888888888888777776554
No 353
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=40.71 E-value=54 Score=34.37 Aligned_cols=130 Identities=18% Similarity=0.289 Sum_probs=20.9
Q ss_pred hccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q 012561 260 QKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQ 339 (461)
Q Consensus 260 QaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~Q 339 (461)
.+||+...|.+..+|.-=+.+=+.++.|-+....|...|...-.+..+ +..++..|...+++++..=+....-
T Consensus 27 ~GDLs~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~-------~~s~L~sLsstV~~lq~Sl~~lsss 99 (326)
T PF04582_consen 27 PGDLSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLAD-------MTSELNSLSSTVTSLQSSLSSLSSS 99 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 578888888888888877777777777777666666666655555443 4455555555555555444444444
Q ss_pred HHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhh
Q 012561 340 VQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYK 419 (461)
Q Consensus 340 vqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~k 419 (461)
|..|+.-+..... .|-.||....+-. =.++++- .-...|.-.|.+|+.|++..|.-
T Consensus 100 Vs~lS~~ls~h~s-----------------sIS~Lqs~v~~ls--TdvsNLk-----sdVSt~aL~ItdLe~RV~~LEs~ 155 (326)
T PF04582_consen 100 VSSLSSTLSDHSS-----------------SISDLQSSVSALS--TDVSNLK-----SDVSTQALNITDLESRVKALESG 155 (326)
T ss_dssp -----------------------------------HHHHHHHH--HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhhhhhhhhhhh-----------------hHHHHHHhhhhhh--hhhhhhh-----hhhhhhcchHhhHHHHHHHHhcC
Confidence 4444444444433 4444444443321 1122221 12245667788999999987765
Q ss_pred h
Q 012561 420 L 420 (461)
Q Consensus 420 i 420 (461)
.
T Consensus 156 ~ 156 (326)
T PF04582_consen 156 S 156 (326)
T ss_dssp T
T ss_pred C
Confidence 3
No 354
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=40.68 E-value=3.6e+02 Score=26.31 Aligned_cols=164 Identities=19% Similarity=0.234 Sum_probs=83.7
Q ss_pred HHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHH
Q 012561 230 SANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAM 309 (461)
Q Consensus 230 ~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~ 309 (461)
++.+-...++++...+++-+.-+..||. .+-....+.+.+..+|=..|++-| |++. +..|...+-.-..+|-
T Consensus 88 ~a~~L~~~i~~l~~~i~~l~~~~~~l~~---~~~~~~~~~l~~~l~ea~~mL~em---r~r~--f~~~~~~Ae~El~~A~ 159 (264)
T PF06008_consen 88 RAQDLEQFIQNLQDNIQELIEQVESLNE---NGDQLPSEDLQRALAEAQRMLEEM---RKRD--FTPQRQNAEDELKEAE 159 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCc---ccCCCCHHHHHHHHHHHHHHHHHH---Hhcc--chhHHHHHHHHHHHHH
Confidence 3344444455556666666666777776 333334456666666666676665 3331 3334443333333332
Q ss_pred HhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhc
Q 012561 310 RQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSD 389 (461)
Q Consensus 310 kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aD 389 (461)
.|.+.|... ++...++ .-+-+..+...+..|.. .+.-|+..|.-|..+.+-|+
T Consensus 160 ----~LL~~v~~~---~~~~~~~---~~~l~~~i~~~L~~~~~-----------------kL~Dl~~~l~eA~~~~~ea~ 212 (264)
T PF06008_consen 160 ----DLLSRVQKW---FQKPQQE---NESLAEAIRDDLNDYNA-----------------KLQDLRDLLNEAQNKTREAE 212 (264)
T ss_pred ----HHHHHHHHH---HhhHHHh---hHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHH
Confidence 333332221 1110000 00112334445566665 66667777777777777766
Q ss_pred hhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhhhhHHhHH
Q 012561 390 LSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRK 428 (461)
Q Consensus 390 lsa~etrte~E~Qk~~i~eLq~RLadaE~kiiEGEkLRK 428 (461)
--...-..-+++=+..+.++++--.++.-.|-+|+.+-.
T Consensus 213 ~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~~a~~~L~ 251 (264)
T PF06008_consen 213 DLNRANQKNLEDLEKKKQELSEQQNEVSETLKEAEDLLD 251 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555554455555555555556666666665543
No 355
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=40.67 E-value=1.3e+02 Score=27.89 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH
Q 012561 313 DALVHEVASMRVELQQVRDDRDHQLSQVQALTAE 346 (461)
Q Consensus 313 ~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE 346 (461)
+.+..|++.|+.||.....|.+..-.|+..|+.|
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566788888888888777777777777666655
No 356
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=40.33 E-value=2.3e+02 Score=24.61 Aligned_cols=72 Identities=19% Similarity=0.194 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhh
Q 012561 220 DLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQY 291 (461)
Q Consensus 220 eL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~ 291 (461)
=|+++..-++.|-+-|.-|+==..-|.|-|.+|.+-+-.+.+.-+.......++.-|...--+-|.+|=|..
T Consensus 5 vleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467777888888899999988888899999999998888877777778888888899999999888888854
No 357
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=40.27 E-value=2.4e+02 Score=24.15 Aligned_cols=93 Identities=18% Similarity=0.213 Sum_probs=48.8
Q ss_pred HHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH---HHHHhHHhhhhhhHHHHHHhhHHHH
Q 012561 294 LQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTA---EVIKHKELAVSSEDLEARCASQSNQ 370 (461)
Q Consensus 294 Lq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~a---E~~~ykEl~~k~~~LEetCssQ~eq 370 (461)
|+.=|...+..-+.|-.+--....++......|.+..+.++....+...... -+..+.-...=...|...+..|...
T Consensus 4 L~~vl~lr~~~ed~a~~~la~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~~~~~l~~~~~f~~~l~~~i~~q~~~ 83 (141)
T TIGR02473 4 LQKLLDLREKEEEQAKLELAKAQAEFERLETQLQQLIKYREEYEQQALEKVGAGTSALELSNYQRFIRQLDQRIQQQQQE 83 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444454455555555555555555555555555444332111 1111122222345667777777777
Q ss_pred HHHHHHHHHHHHhhhh
Q 012561 371 IRSLSDQLAAAEEKLE 386 (461)
Q Consensus 371 I~~Lq~QLa~A~eKLk 386 (461)
+..++.++..+...|.
T Consensus 84 l~~~~~~~e~~r~~l~ 99 (141)
T TIGR02473 84 LALLQQEVEAKRERLL 99 (141)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777766664
No 358
>PF14992 TMCO5: TMCO5 family
Probab=40.23 E-value=2.1e+02 Score=29.66 Aligned_cols=77 Identities=14% Similarity=0.138 Sum_probs=58.4
Q ss_pred HHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHH
Q 012561 160 ALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASIN 239 (461)
Q Consensus 160 ~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slq 239 (461)
+++....+++.++.-+...|++++..+.|.+++-.. .+.-+..+...+.+.+..| ..++. +.|..-+|.++.+.+
T Consensus 106 ~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~---v~~l~eDq~~~i~klkE~L-~rmE~-ekE~~lLe~el~k~q 180 (280)
T PF14992_consen 106 QLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDYQQ---VHQLCEDQANEIKKLKEKL-RRMEE-EKEMLLLEKELSKYQ 180 (280)
T ss_pred chhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHh
Confidence 466777888999999999999999999999985443 3444556777777777777 66777 777777777777666
Q ss_pred HH
Q 012561 240 DM 241 (461)
Q Consensus 240 Dm 241 (461)
-+
T Consensus 181 ~~ 182 (280)
T PF14992_consen 181 MQ 182 (280)
T ss_pred ch
Confidence 55
No 359
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=40.22 E-value=5.4e+02 Score=28.25 Aligned_cols=19 Identities=26% Similarity=0.240 Sum_probs=9.5
Q ss_pred HhHHHHHHHHHHHHhHHHh
Q 012561 236 ASINDMYKLLQEYNSSLQH 254 (461)
Q Consensus 236 ~slqDmyKRLQEYNTSLQQ 254 (461)
......-|-|.|-|-||--
T Consensus 262 ~ree~r~K~lKeEmeSLke 280 (561)
T KOG1103|consen 262 EREEKRQKMLKEEMESLKE 280 (561)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444555555666543
No 360
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=40.17 E-value=1.3e+02 Score=29.90 Aligned_cols=43 Identities=12% Similarity=0.121 Sum_probs=32.4
Q ss_pred hhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhh
Q 012561 288 RGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVR 330 (461)
Q Consensus 288 rG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvR 330 (461)
......|..++...-.++-+-..|-++|..||..||+.+++..
T Consensus 39 ~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~ 81 (263)
T PRK10803 39 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQ 81 (263)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444555556666666777888999999999999999987654
No 361
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=40.11 E-value=3.8e+02 Score=26.42 Aligned_cols=77 Identities=22% Similarity=0.274 Sum_probs=37.7
Q ss_pred HHHHHHHhHHHhhhhhhhccH-------HHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHH
Q 012561 243 KLLQEYNSSLQHYNTKLQKDI-------DAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDAL 315 (461)
Q Consensus 243 KRLQEYNTSLQQYNSkLQaDl-------~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L 315 (461)
+-+++|-..|.++.-+.|+=- ..|++.|.++.+.=. ..+..|+...+-.+.+ ..|.++.+.||.-=
T Consensus 118 k~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~---~e~~aLqa~lkk~e~~----~~SLe~~LeQK~kE 190 (207)
T PF05010_consen 118 KCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQ---AELLALQASLKKEEMK----VQSLEESLEQKTKE 190 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 345555555555555544433 334444444332211 1222333333333333 35667777777777
Q ss_pred HHHHHHHHHHH
Q 012561 316 VHEVASMRVEL 326 (461)
Q Consensus 316 ~~Ev~~LR~EL 326 (461)
..|+..+=.||
T Consensus 191 n~ELtkICDeL 201 (207)
T PF05010_consen 191 NEELTKICDEL 201 (207)
T ss_pred HHHHHHHHHHH
Confidence 77776665554
No 362
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=40.00 E-value=4.4e+02 Score=27.22 Aligned_cols=15 Identities=7% Similarity=0.125 Sum_probs=7.5
Q ss_pred HHHHHHHhHHHHhhh
Q 012561 405 LINELRNHLEDAEYK 419 (461)
Q Consensus 405 ~i~eLq~RLadaE~k 419 (461)
.+...+..|+.|+..
T Consensus 198 ~v~~a~a~l~~a~~~ 212 (390)
T PRK15136 198 AVQQAATEVRNAWLA 212 (390)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555555543
No 363
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=39.92 E-value=4.7e+02 Score=27.55 Aligned_cols=233 Identities=23% Similarity=0.266 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHH----HHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 012561 116 MDYIKRLRLCIK----WFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEES 191 (461)
Q Consensus 116 ~dyIKrLr~CIr----WfqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~kees 191 (461)
-|=|-.||+=|- |-|+-|..|+.+++-++ .+..++...+|-.+|-|.-+|..-..++..|--
T Consensus 5 q~eia~LrlEidtik~q~qekE~ky~ediei~K-------ekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~a------- 70 (305)
T PF14915_consen 5 QDEIAMLRLEIDTIKNQNQEKEKKYLEDIEILK-------EKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKA------- 70 (305)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH-------
Confidence 355667776553 55666777777665544 455556666666666666666655555544432
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHH---HHHHHHHhHHHhhhhhhhccHHHHHH
Q 012561 192 DKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMY---KLLQEYNSSLQHYNTKLQKDIDAAHE 268 (461)
Q Consensus 192 eKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmy---KRLQEYNTSLQQYNSkLQaDl~~~~e 268 (461)
|=--.---+.+||+-+...|....|..--|.-+-.+ ..+-.+|=.|.- .|-.+==-+|| .++-.|++...+
T Consensus 71 ENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d---~dqsq~skrdlelafqr~rdEw~~lq---dkmn~d~S~lkd 144 (305)
T PF14915_consen 71 ENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQD---HDQSQTSKRDLELAFQRARDEWVRLQ---DKMNSDVSNLKD 144 (305)
T ss_pred HHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHhhHHHHHHHHHHHhhHHHHHH---HHhcchHHhHHH
Confidence 222222334555555555444444333333222222 122222222211 11111001111 122223322221
Q ss_pred HHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH----HH
Q 012561 269 SIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQA----LT 344 (461)
Q Consensus 269 ~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~Qvqs----L~ 344 (461)
.. ..+-..||.-...++||+..|-..+.+.-|.+--- +++..+|.| ...|+.. ..
T Consensus 145 ~n-------e~LsQqLskaesK~nsLe~elh~trdaLrEKtL~l-------E~~QrdL~Q-------tq~q~KE~e~m~q 203 (305)
T PF14915_consen 145 NN-------EILSQQLSKAESKFNSLEIELHHTRDALREKTLAL-------ESVQRDLSQ-------TQCQIKEIEHMYQ 203 (305)
T ss_pred Hh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH-------HHHHHHHHHHHHH
Confidence 11 12234455555556666666655554433322111 122222222 2222222 22
Q ss_pred HHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhc
Q 012561 345 AEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSD 389 (461)
Q Consensus 345 aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aD 389 (461)
.|-++....+.|-+++||.-+--.-.=-.|++||..|..|--.-+
T Consensus 204 ne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~ke 248 (305)
T PF14915_consen 204 NEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKE 248 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444448889999999955433344579999999998864433
No 364
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=39.77 E-value=4e+02 Score=26.72 Aligned_cols=58 Identities=17% Similarity=0.214 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhh
Q 012561 217 LSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGE 274 (461)
Q Consensus 217 LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~e 274 (461)
|.++..+...++..+..++.+.+.=++.+|+=+.-|+-|=..++-+-+...|...++|
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq 206 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQ 206 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 4444444444444444555555555555566566666555555555555555544444
No 365
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=39.66 E-value=4e+02 Score=28.80 Aligned_cols=93 Identities=15% Similarity=0.320 Sum_probs=57.6
Q ss_pred HHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHH----HHHHhhHHHH
Q 012561 241 MYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQD----EAMRQKDALV 316 (461)
Q Consensus 241 myKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~----Ea~kQK~~L~ 316 (461)
+...|..|=.+||.+.++=-.. -.+..+++....|=.+++++-.+|...+...+ ..+.+-..|+
T Consensus 117 l~~~l~~ff~a~~~la~~P~~~------------~~r~~vl~~a~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll 184 (507)
T PRK07739 117 LNKVLDQFWNSLQELSKNPENL------------GARSVVRQRAQALAETFNYLSQSLTDIQNDLKSEIDVTVKEINSLA 184 (507)
T ss_pred HHHHHHHHHHHHHHHHhCcCCH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666555433221 12455666666665666665555555554443 4556677788
Q ss_pred HHHHHHHHHHhh----------hhhhhhhhHHHHHHHHH
Q 012561 317 HEVASMRVELQQ----------VRDDRDHQLSQVQALTA 345 (461)
Q Consensus 317 ~Ev~~LR~ELqq----------vRdDRDr~~~QvqsL~a 345 (461)
.++..|=.++.. .+|.||+.+.++..+..
T Consensus 185 ~~Ia~LN~~I~~~~~~g~~~ndLlDqRD~ll~~LS~~v~ 223 (507)
T PRK07739 185 SQISDLNKQIAKVEPNGYLPNDLYDQRDLLLDELSKIVN 223 (507)
T ss_pred HHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhhcC
Confidence 888888777764 68889998888776654
No 366
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=39.52 E-value=4.3e+02 Score=28.37 Aligned_cols=68 Identities=16% Similarity=0.255 Sum_probs=45.5
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHH----HHhhHHHHHHHHHHHHHHhh----------hhhhhhhhHHHHHH
Q 012561 277 KSAIVENLSTLRGQYISLQEQLSTYKASQDEA----MRQKDALVHEVASMRVELQQ----------VRDDRDHQLSQVQA 342 (461)
Q Consensus 277 K~tivEnls~LrG~~~SLq~QL~~skaSq~Ea----~kQK~~L~~Ev~~LR~ELqq----------vRdDRDr~~~Qvqs 342 (461)
+..+++...+|=.+++.+-.+|...+...++. +.+-..+..++..|=.++.. .+|.||+.+.++..
T Consensus 124 R~~vl~~a~~L~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~l~~~Ia~LN~~I~~~~~~g~~~ndL~DqRD~ll~~LS~ 203 (483)
T PRK07521 124 AQAAVDAAQDLANSLNDASDAVQSARADADAEIADSVDTLNDLLAQFEDANNAVVSGTATGRDASDALDQRDKLLKQISQ 203 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHHh
Confidence 55666666666666666666666665555444 55666777777777777754 57888888877665
Q ss_pred HH
Q 012561 343 LT 344 (461)
Q Consensus 343 L~ 344 (461)
+.
T Consensus 204 ~v 205 (483)
T PRK07521 204 IV 205 (483)
T ss_pred hc
Confidence 54
No 367
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=39.51 E-value=4e+02 Score=26.58 Aligned_cols=20 Identities=35% Similarity=0.233 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHhhhhhhc
Q 012561 370 QIRSLSDQLAAAEEKLEVSD 389 (461)
Q Consensus 370 qI~~Lq~QLa~A~eKLk~aD 389 (461)
++..++.+|+.|+..|..+.
T Consensus 191 ~~~~~~a~l~~a~~~l~~~~ 210 (346)
T PRK10476 191 QRAAREAALAIAELHLEDTT 210 (346)
T ss_pred HHHHHHHHHHHHHHHhhcCE
Confidence 44455555555555444333
No 368
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=39.29 E-value=3.8e+02 Score=26.19 Aligned_cols=57 Identities=5% Similarity=0.102 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhHH------HHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhh
Q 012561 216 SLSEDLGKAQEELQSANQRIASIN------DMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGE 274 (461)
Q Consensus 216 ~LseeL~k~q~E~~~anqqi~slq------DmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~e 274 (461)
.+...|+++..-+....+++..++ +++.-|+.=|.-|...|..+ |++.+...+..++
T Consensus 78 ~~E~ql~q~~~ql~nLEq~~~~iE~a~~~~ev~~aLk~g~~aLK~~~k~~--~idkVd~lmDei~ 140 (191)
T PTZ00446 78 LYEQEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAANTHKKLNNEI--NTQKVEKIIDTIQ 140 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHH
Confidence 344455555555555555555544 57788888888999999887 6777765554444
No 369
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=39.25 E-value=1.5e+02 Score=31.18 Aligned_cols=70 Identities=21% Similarity=0.217 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHh--------hhhhhhhhhhHHHHHHHhHhhHH
Q 012561 237 SINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVEN--------LSTLRGQYISLQEQLSTYKASQD 306 (461)
Q Consensus 237 slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEn--------ls~LrG~~~SLq~QL~~skaSq~ 306 (461)
-+=|.+.+|++=|..|++=|-+|+.++......+.+.-.+|..+=.. |+.=|-+..+||.+|+.++....
T Consensus 134 ~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~~~~ 211 (342)
T PF06632_consen 134 WCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAKEEEK 211 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcccc
Confidence 34566778888888888888888888888888888888888876544 34457778888888887775433
No 370
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=39.23 E-value=2e+02 Score=22.99 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=5.9
Q ss_pred hhhHHHHHHHHHHHHH
Q 012561 334 DHQLSQVQALTAEVIK 349 (461)
Q Consensus 334 Dr~~~QvqsL~aE~~~ 349 (461)
+.+-.++..+..++..
T Consensus 62 ~~~~~~~~~~~~~~~~ 77 (123)
T PF02050_consen 62 QQQQQELERLEQEVEQ 77 (123)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 371
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=39.22 E-value=3.1e+02 Score=25.20 Aligned_cols=72 Identities=21% Similarity=0.329 Sum_probs=48.0
Q ss_pred hhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Q 012561 273 GEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEV 347 (461)
Q Consensus 273 ~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~ 347 (461)
+-|.=..+-+.|+.-|.|. ...|+.--.++|+...--+...+||.-+|.++.++++|=+.--.-|..|..-+
T Consensus 48 v~kql~~vs~~l~~tKkhL---sqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki 119 (126)
T PF07889_consen 48 VSKQLEQVSESLSSTKKHL---SQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKI 119 (126)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334455555555553 34555556677777777778889999999999999998776666666665544
No 372
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=39.01 E-value=1.4e+02 Score=26.05 Aligned_cols=40 Identities=28% Similarity=0.309 Sum_probs=34.9
Q ss_pred HHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhh
Q 012561 161 LRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSL 200 (461)
Q Consensus 161 lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~ 200 (461)
-..++.+|..-+..|.+.+.+|.-+|..+-.||...+..+
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ll 86 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLDTEREEKQELLKLL 86 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4478889999999999999999999999999998887643
No 373
>PF10653 Phage-A118_gp45: Protein gp45 of Bacteriophage A118; InterPro: IPR018915 The proteins in this entry represents Gp45 in Listeria phage A118 (Bacteriophage A118) and related proteins; Gp45 is thought to have a function in the phage tail-fibre system.
Probab=38.57 E-value=22 Score=28.98 Aligned_cols=14 Identities=57% Similarity=1.127 Sum_probs=12.4
Q ss_pred hhHhHHHHHHHHHH
Q 012561 111 RCENMMDYIKRLRL 124 (461)
Q Consensus 111 r~EqM~dyIKrLr~ 124 (461)
-||.|.|||..|++
T Consensus 41 gcekm~dyieelkl 54 (62)
T PF10653_consen 41 GCEKMTDYIEELKL 54 (62)
T ss_pred hhHHHHHHHHHHhh
Confidence 49999999999885
No 374
>PRK10807 paraquat-inducible protein B; Provisional
Probab=37.85 E-value=4.6e+02 Score=28.98 Aligned_cols=46 Identities=24% Similarity=0.353 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhHHHhh--hhhhhccHHHHHHHHhhhhhHHHHHHHhh
Q 012561 239 NDMYKLLQEYNSSLQHY--NTKLQKDIDAAHESIKRGEKEKSAIVENL 284 (461)
Q Consensus 239 qDmyKRLQEYNTSLQQY--NSkLQaDl~~~~e~~~r~eKEK~tivEnl 284 (461)
.|+.+-|++.++.|+.| +|.++.|+..+-..+.++-.+=..++..|
T Consensus 476 ~~L~~TL~~l~~~l~~~~~~s~~~~~l~~tl~~l~~~~r~lr~l~~~L 523 (547)
T PRK10807 476 ADMQKTLRELNRSMQGFQPGSPAYNKMVADMQRLDQVLRELQPVLKTL 523 (547)
T ss_pred HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888999999987 56777787777666666665555555443
No 375
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=37.69 E-value=90 Score=25.41 Aligned_cols=46 Identities=28% Similarity=0.314 Sum_probs=40.5
Q ss_pred HHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhh
Q 012561 376 DQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLI 421 (461)
Q Consensus 376 ~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~kii 421 (461)
.+|..-=++|.--|++..+...-|++=..++...+.+|.+||.+|-
T Consensus 8 ~~Le~Iv~~LE~~~l~Leesl~lyeeG~~L~k~c~~~L~~ae~kv~ 53 (67)
T TIGR01280 8 SELEQIVQKLESGDLALEEALNLFERGMALARRCEKKLAQAEQRVR 53 (67)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566788999999999999999999999999999999998863
No 376
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=37.53 E-value=4.4e+02 Score=26.53 Aligned_cols=183 Identities=18% Similarity=0.214 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHh----hHHHHHHhhHH
Q 012561 239 NDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKA----SQDEAMRQKDA 314 (461)
Q Consensus 239 qDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~ska----Sq~Ea~kQK~~ 314 (461)
.+++..+..|-.+|++ |...=..+..-=..+..+|..|.|...+|...+-+... +....+..-..
T Consensus 129 ~~l~~~~~k~~~~L~~-----------A~~sD~~l~~~~~~~~~~l~lL~~~~~~l~~~~Ps~~~~~~~~~~~~v~~Lr~ 197 (342)
T cd08915 129 KELYEKVTKLRGYLEQ-----------ASNSDNEVLQCYESIDPNLVLLCGGYKELKAFIPSPYPALDPEVSEVVSSLRP 197 (342)
T ss_pred HHHHHHHHHHHHHHHH-----------HHhhhHHHHHHHHHHHHHHHHhcCChHHHHHhCCCccccCCchhhHHHHHHHH
Confidence 3777788888777764 22222223333345567888888877777776651111 12234444444
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHH----------HHHH----------------HHHHhHHhhhhhhHHHHHHhhHH
Q 012561 315 LVHEVASMRVELQQVRDDRDHQLSQVQ----------ALTA----------------EVIKHKELAVSSEDLEARCASQS 368 (461)
Q Consensus 315 L~~Ev~~LR~ELqqvRdDRDr~~~Qvq----------sL~a----------------E~~~ykEl~~k~~~LEetCssQ~ 368 (461)
++++|. .++..|++.+.++. .|.. |+.+|.. -.+.++.+-..|.
T Consensus 198 ~l~~l~-------~lk~eR~~~~~~lk~~~~~ddI~~~ll~~~~~~~~~~~e~lf~~eL~kf~~---~~~~i~~~~~~Q~ 267 (342)
T cd08915 198 LLNEVS-------ELEKERERFISELEIKSRNNDILPKLITEYKKNGTTEFEDLFEEHLKKFDK---DLTYVEKTKKKQI 267 (342)
T ss_pred HHHHHH-------HHHHHHHHHHHHHHHHhhhcCCcHHHHHHhhccccchhHHHHHHHHHHHhH---HHHHHHHHHHHHH
Confidence 444444 44455555554441 1211 2222322 3344445555555
Q ss_pred HHHHHHHHHHHHHHhhhh-hhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhhhhHHhHHhhhhhhhhhcccceeeeee
Q 012561 369 NQIRSLSDQLAAAEEKLE-VSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILELEVNLSSSALF 447 (461)
Q Consensus 369 eqI~~Lq~QLa~A~eKLk-~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~kiiEGEkLRKKLHNTILELKGNIRv~crv 447 (461)
.-|+.|+ .++.++- +... ..+...-+..-..+..-=....+---.|-+|-+.=..|...+..|..+|..||.-
T Consensus 268 ~ll~~i~----~~~~~f~~~~~~--~~~~~~r~~~l~~L~~ay~~y~el~~~l~eG~~FY~dL~~~~~~l~~~~~~f~~~ 341 (342)
T cd08915 268 ELIKEID----AANQEFSQVKNS--NDSLDPREEALQDLEASYKKYLELKENLNEGSKFYNDLIEKVNRLLEECEDFVNA 341 (342)
T ss_pred HHHHHHH----HHHHHHHHHhcc--chhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444433 3333331 0110 0111111111111222222233334456679999999999999999999999965
Q ss_pred c
Q 012561 448 R 448 (461)
Q Consensus 448 r 448 (461)
|
T Consensus 342 R 342 (342)
T cd08915 342 R 342 (342)
T ss_pred C
Confidence 5
No 377
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=37.26 E-value=4.2e+02 Score=26.16 Aligned_cols=34 Identities=12% Similarity=0.313 Sum_probs=21.6
Q ss_pred HHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhH
Q 012561 160 ALRNKEEELNLIIVELRKSFASLQEKLAKEESDK 193 (461)
Q Consensus 160 ~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseK 193 (461)
....++.++...+..|+..++.++..+.+.....
T Consensus 132 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~ 165 (301)
T PF14362_consen 132 SFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEA 165 (301)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677777777777777766666555443
No 378
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=36.67 E-value=61 Score=33.68 Aligned_cols=31 Identities=39% Similarity=0.478 Sum_probs=16.5
Q ss_pred HHHHHhhhhh----------hchhhh--hhhhhhHHhHHHHHH
Q 012561 378 LAAAEEKLEV----------SDLSAL--ETKTEFEGQKKLINE 408 (461)
Q Consensus 378 La~A~eKLk~----------aDlsa~--etrte~E~Qk~~i~e 408 (461)
|-+|.+|-.+ .|+|+. ..|-.|-.-++.+.+
T Consensus 266 L~aAR~~~~~~~~g~~I~if~DlS~~~l~kRr~~~~i~~~Lr~ 308 (370)
T PF02994_consen 266 LKAAREKGQLTYKGKRIRIFPDLSPETLQKRRKFNPIKKKLRE 308 (370)
T ss_dssp HHHHHHHS-EEETTEEEEEECTSTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCceeeCCCceEEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5556665443 677663 555566555554443
No 379
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=36.52 E-value=2.2e+02 Score=24.22 Aligned_cols=65 Identities=23% Similarity=0.288 Sum_probs=48.2
Q ss_pred HHHHhHHHhhHHHHHHhhHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhh
Q 012561 183 QEKLAKEESDKLAALDSLAREKE-TRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHY 255 (461)
Q Consensus 183 qe~L~keeseKl~a~~s~~kEkE-aR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQY 255 (461)
-.+|.||. .+|.+|.+ ....+++..+. ..|--.++.....+..=..|+-|+.+||+..-..|+.|
T Consensus 9 vkRL~KE~-------~~Y~kE~~~q~~rle~~k~~-~~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~ 74 (90)
T PF02970_consen 9 VKRLLKEE-------ASYEKEVEEQEARLEKMKAE-GEDEYDIKKQEEVLEETKMMIPDCQQRLEKAVEDLEEF 74 (90)
T ss_dssp HHHHHHHH-------HHHHHHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34555554 36777655 33445556555 33677888888889999999999999999999999988
No 380
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=36.40 E-value=2.7e+02 Score=23.67 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhh
Q 012561 313 DALVHEVASMRVELQQVRDDRD 334 (461)
Q Consensus 313 ~~L~~Ev~~LR~ELqqvRdDRD 334 (461)
+.-.+|....-.||..+-+|+.
T Consensus 26 ~~~~~E~~~v~~EL~~l~~d~~ 47 (105)
T cd00632 26 EAQLNENKKALEELEKLADDAE 47 (105)
T ss_pred HHHHHHHHHHHHHHHcCCCcch
Confidence 3344455555555555555555
No 381
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=36.30 E-value=5.8e+02 Score=27.52 Aligned_cols=89 Identities=21% Similarity=0.288 Sum_probs=55.4
Q ss_pred HHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHH-
Q 012561 161 LRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASIN- 239 (461)
Q Consensus 161 lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slq- 239 (461)
+.....|+......|...+..|++.+.++-. -...++. |.|--.+++-..+++-++--|.|+..+.|.+.+++
T Consensus 217 ~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~---~~~~~Lq---EEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EE 290 (395)
T PF10267_consen 217 ILEELREIKESQSRLEESIEKLKEQYQREYQ---FILEALQ---EERYRYERLEEQLNDLTELHQNEIYNLKQELASMEE 290 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3344445555555556666666665554432 3334443 44455566667777888888999999999987777
Q ss_pred ----HHHHHHHHHHhHHHhh
Q 012561 240 ----DMYKLLQEYNSSLQHY 255 (461)
Q Consensus 240 ----DmyKRLQEYNTSLQQY 255 (461)
..|-|..+.+-.+=.+
T Consensus 291 K~~Yqs~eRaRdi~E~~Es~ 310 (395)
T PF10267_consen 291 KMAYQSYERARDIWEVMESC 310 (395)
T ss_pred HHHHHHHHHHhHHHHHHHHH
Confidence 4677777666555433
No 382
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=36.22 E-value=2.8e+02 Score=23.83 Aligned_cols=20 Identities=15% Similarity=0.414 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 012561 115 MMDYIKRLRLCIKWFQELEG 134 (461)
Q Consensus 115 M~dyIKrLr~CIrWfqelE~ 134 (461)
..+|...+.-.+.|+.+.|.
T Consensus 2 ~~~f~~~~~~l~~Wl~~~e~ 21 (213)
T cd00176 2 LQQFLRDADELEAWLSEKEE 21 (213)
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 45788888999999988875
No 383
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.09 E-value=4.9e+02 Score=28.95 Aligned_cols=58 Identities=28% Similarity=0.240 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHH
Q 012561 168 LNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQ 225 (461)
Q Consensus 168 L~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q 225 (461)
-.-.-..|++.+-+|++.|.++.-.+...=.-+..++|.=..-+.|.++|..+++++.
T Consensus 432 ~ehv~e~l~~ei~~L~eqle~e~~~~~~le~ql~~~ve~c~~~~aS~~slk~e~erl~ 489 (542)
T KOG0993|consen 432 SEHVQEDLVKEIQSLQEQLEKERQSEQELEWQLDDDVEQCSNCDASFASLKVEPERLH 489 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 3445678999999999999999999999999999999999999999999999999995
No 384
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=35.88 E-value=12 Score=40.89 Aligned_cols=142 Identities=20% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHH-HH-------HHHhHHHhhhh-hhhccHHHHHHHHhhhhhHHHHHH
Q 012561 211 ERSHASLSEDLGKAQEELQSANQRIASINDMYKL-LQ-------EYNSSLQHYNT-KLQKDIDAAHESIKRGEKEKSAIV 281 (461)
Q Consensus 211 E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKR-LQ-------EYNTSLQQYNS-kLQaDl~~~~e~~~r~eKEK~tiv 281 (461)
...++.|...+..++.|+..+......-++.-.+ |. +--+.+|.+.+ -|..-+......+..+.++|..=+
T Consensus 25 ~~~~~~l~~~i~~~~~E~~~L~~~lg~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~L~~~~~~L~~~le~l~~~~~eR~ 104 (619)
T PF03999_consen 25 NELKARLLQSIADAEAELADLSSELGEEQEHLCRELEKEPLSLEEEKDILQLEKSMPLKEQLPKLRPQLEELRKEKEERM 104 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHhcccccccccccchhhhcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666662222222222111 11 12223333332 233334444455555677777777
Q ss_pred HhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHH--HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH
Q 012561 282 ENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALV--HEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE 352 (461)
Q Consensus 282 Enls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~--~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE 352 (461)
..+..|......|.+.|...-.......-...++- .++..|+..|+.+++.+++-+.+|..+..+|..+-+
T Consensus 105 ~~~~~L~~~~~~l~~~Lg~~~~~~~~~~~~~~~l~S~~~l~~l~~~l~~L~~e~~~R~~~v~~l~~~I~~l~~ 177 (619)
T PF03999_consen 105 QEFKELQEQLEQLCEELGELPLCLNPFDIDESDLPSLEELEELRQHLQRLQEEKERRLEEVRELREEIISLME 177 (619)
T ss_dssp -------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhccccccccCCccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766666666655432222211111223444 788899999999999999988888888887776655
No 385
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=35.76 E-value=7.4e+02 Score=28.54 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=16.6
Q ss_pred HHHHhHhhHHHHHHhhHHHHHHHHHHHHHH
Q 012561 297 QLSTYKASQDEAMRQKDALVHEVASMRVEL 326 (461)
Q Consensus 297 QL~~skaSq~Ea~kQK~~L~~Ev~~LR~EL 326 (461)
|...-+....+-..+-+.++++|+.++..+
T Consensus 686 Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~~ 715 (717)
T PF10168_consen 686 QKRTIKEILKQQGEEIDELVKQIKNIKKIV 715 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444444445555566666666665543
No 386
>PF01665 Rota_NSP3: Rotavirus non-structural protein NSP3; InterPro: IPR002873 This family consists of rotaviral non-structural RNA binding protein 34 (NS34 or NSP3). The NSP3 protein has been shown to bind viral RNA. The NSP3 protein consists of 3 conserved functional domains; a basic region which binds ssRNA, a region containing heptapeptide repeats mediating oligomerisation and a leucine zipper motif []. NSP3 may play a central role in replication and assembly of genomic RNA structures []. Rotaviruses have a dsRNA genome and are a major cause cause of acute gastroenteritis in the young of many species [].; GO: 0003723 RNA binding; PDB: 1KNZ_B 1LJ2_A.
Probab=35.67 E-value=45 Score=34.23 Aligned_cols=40 Identities=25% Similarity=0.366 Sum_probs=26.0
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhh-ccHHHH
Q 012561 227 ELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQ-KDIDAA 266 (461)
Q Consensus 227 E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQ-aDl~~~ 266 (461)
-.+..+....++|.+--+-|.||.+||+||-+|- .|+...
T Consensus 195 kakkv~e~m~~lq~~I~~qq~~ine~q~~n~k~~~k~~~~k 235 (280)
T PF01665_consen 195 KAKKVNENMYSLQNVIFQQQYRINEFQQYNEKLELKDLQNK 235 (280)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhh
Confidence 3455678889999999999999999999999997 776654
No 387
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=35.67 E-value=2.8e+02 Score=23.66 Aligned_cols=55 Identities=27% Similarity=0.293 Sum_probs=35.2
Q ss_pred hhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhh
Q 012561 256 NTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRD 331 (461)
Q Consensus 256 NSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRd 331 (461)
..++..|++...+.+.|+.-||+- +.--.-++++.+|+|.+|+..|+.-+..-++
T Consensus 19 ~~~k~~~~~~lE~k~~rl~~Ek~k---------------------adqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~ 73 (96)
T PF08647_consen 19 ADKKVKELTILEQKKLRLEAEKAK---------------------ADQKYFAAMRSKDALDNEMKKLNTQLSKSSE 73 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHH
Confidence 445566666666666666666532 2233446788888888888888876655443
No 388
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=35.61 E-value=98 Score=25.86 Aligned_cols=45 Identities=20% Similarity=0.246 Sum_probs=39.9
Q ss_pred HHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhh
Q 012561 377 QLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLI 421 (461)
Q Consensus 377 QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~kii 421 (461)
+|..--.+|.-.|++..+...-|+.=-.++...+.+|.+||.+|.
T Consensus 14 ~LE~IV~~LE~~~l~Leesl~~ye~G~~L~k~c~~~L~~ae~kv~ 58 (75)
T PRK14064 14 ELETIVEALENGSASLEDSLDMYQKGIELTKLCQDKLQSAEKRMA 58 (75)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555688889999999999999999999999999999999864
No 389
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=35.47 E-value=2.1e+02 Score=24.39 Aligned_cols=61 Identities=21% Similarity=0.269 Sum_probs=42.1
Q ss_pred HhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhh
Q 012561 326 LQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLE 386 (461)
Q Consensus 326 LqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk 386 (461)
|.++|+|=-.--.+|.+|...+...+.-.-.+.+|++.--.|..++.+|+-+++.-+..|.
T Consensus 6 Ll~Ir~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL~ 66 (75)
T PF05531_consen 6 LLVIRQDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDILN 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3445555444455666777777777775666677788888888888888887777666654
No 390
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=35.13 E-value=3.6e+02 Score=24.76 Aligned_cols=127 Identities=21% Similarity=0.289 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHhHhHH-HHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHH
Q 012561 219 EDLGKAQEELQSANQRIASIN-DMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQ 297 (461)
Q Consensus 219 eeL~k~q~E~~~anqqi~slq-DmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~Q 297 (461)
.|-+-++-|-..++.+|..=+ ++.+.-.-|..++|.- +...+.+. .+...+..++......+.+
T Consensus 42 iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L--------~h~keKl~-------~~~~~~~~l~~~l~~~~~~ 106 (177)
T PF13870_consen 42 IDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQIL--------THVKEKLH-------FLSEELERLKQELKDREEE 106 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 567777777777777775433 3333334455555432 22222222 2333444555555555566
Q ss_pred HHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhh-----hhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHH
Q 012561 298 LSTYKASQDEAMRQKDALVHEVASMRVELQQV-----RDDRDHQLSQVQALTAEVIKHKELAVSSEDLEAR 363 (461)
Q Consensus 298 L~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqv-----RdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEet 363 (461)
++..+.-...+-.+++.+.+....||...--+ =.|=|+.+..+..|..+|..++. +...|+.+
T Consensus 107 ~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~r---k~~~l~~~ 174 (177)
T PF13870_consen 107 LAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELER---KVEILEMR 174 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHh
Confidence 66666666666667777777777777655443 35778888888888888888877 44444443
No 391
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=34.97 E-value=4.1e+02 Score=25.43 Aligned_cols=31 Identities=10% Similarity=0.277 Sum_probs=15.0
Q ss_pred HHHHHHHHhHHHhhhhhhhccHHHHHHHHhh
Q 012561 242 YKLLQEYNSSLQHYNTKLQKDIDAAHESIKR 272 (461)
Q Consensus 242 yKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r 272 (461)
-+.+.+|....+.|..+-+.=+....|.+.|
T Consensus 58 e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr 88 (219)
T TIGR02977 58 ERRVSRLEAQVADWQEKAELALSKGREDLAR 88 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 3344455555555555544444444444443
No 392
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=34.81 E-value=2.6e+02 Score=23.04 Aligned_cols=72 Identities=18% Similarity=0.209 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhh
Q 012561 313 DALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEK 384 (461)
Q Consensus 313 ~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eK 384 (461)
.+..++|..++..|++++.+-++--.....+.+....-.++..+.+.+-..+......|+.+=+.|.....+
T Consensus 4 ~~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~ 75 (117)
T smart00503 4 DEFFEKVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENLE 75 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 355677777777777777664433333333332221112355566666666666666666666666554443
No 393
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=34.73 E-value=5.7e+02 Score=26.97 Aligned_cols=33 Identities=27% Similarity=0.333 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhh
Q 012561 168 LNLIIVELRKSFASLQEKLAKEESDKLAALDSL 200 (461)
Q Consensus 168 L~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~ 200 (461)
=..-|.|||.+++..+|--..||--..+|=-++
T Consensus 87 RetEI~eLksQL~RMrEDWIEEECHRVEAQLAL 119 (305)
T PF15290_consen 87 RETEIDELKSQLARMREDWIEEECHRVEAQLAL 119 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445688999999999999988886555554443
No 394
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=34.71 E-value=5.5e+02 Score=26.76 Aligned_cols=20 Identities=15% Similarity=0.302 Sum_probs=8.6
Q ss_pred hhHHHHHHHHHHHHHHHHHh
Q 012561 216 SLSEDLGKAQEELQSANQRI 235 (461)
Q Consensus 216 ~LseeL~k~q~E~~~anqqi 235 (461)
....+|+..+.++.++..+|
T Consensus 85 ~q~~~i~~l~~~i~~l~~~i 104 (301)
T PF06120_consen 85 AQKRAIEDLQKKIDSLKDQI 104 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 395
>PF07956 DUF1690: Protein of Unknown function (DUF1690) ; InterPro: IPR012471 Family of uncharacterised fungal proteins.
Probab=34.45 E-value=1.5e+02 Score=27.42 Aligned_cols=77 Identities=19% Similarity=0.289 Sum_probs=45.7
Q ss_pred HHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHh---hhhhhhhhh-HHHH
Q 012561 265 AAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQ---QVRDDRDHQ-LSQV 340 (461)
Q Consensus 265 ~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELq---qvRdDRDr~-~~Qv 340 (461)
.+++.+++++.+-...++.+ | ..+ +.......++...-...+..+|..||..|+ ++++..... ...|
T Consensus 39 Rva~eL~~L~~~~~~~~~~~--l---~~~----~~~ed~~~~~~~lSs~~v~~~i~~L~~kLe~~~kl~~~~~~~~~~~v 109 (142)
T PF07956_consen 39 RVAEELKRLEEEELKKFEEA--L---EKS----LLSEDEKDQDPGLSSKSVNEEIEKLREKLEERKKLRELKEEKNSEEV 109 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHH--H---HHh----hcccccccccccccHHHHHHHHHHHHHHHHHHHHHHhccccccchhh
Confidence 45678888888876655543 1 111 111011122233356788999999999999 555555432 4566
Q ss_pred HHHHHHHHHh
Q 012561 341 QALTAEVIKH 350 (461)
Q Consensus 341 qsL~aE~~~y 350 (461)
.....+|..+
T Consensus 110 ~~aR~~vv~C 119 (142)
T PF07956_consen 110 EKARSAVVRC 119 (142)
T ss_pred HHHHHHHHHH
Confidence 7777777654
No 396
>PRK11519 tyrosine kinase; Provisional
Probab=34.38 E-value=5.9e+02 Score=28.63 Aligned_cols=31 Identities=10% Similarity=0.037 Sum_probs=15.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHhhH
Q 012561 124 LCIKWFQELEGDYAFEHERLRNALELSEQKC 154 (461)
Q Consensus 124 ~CIrWfqelE~~y~~EqekL~~~Le~~ek~~ 154 (461)
--+.|+.+.=...-.+.+....+|..-++++
T Consensus 267 ~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~ 297 (719)
T PRK11519 267 KSLAFLAQQLPEVRSRLDVAENKLNAFRQDK 297 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566766554444444444444444444433
No 397
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=34.25 E-value=7.6e+02 Score=28.23 Aligned_cols=100 Identities=21% Similarity=0.267 Sum_probs=55.4
Q ss_pred HHHHHHHHHchHHHHHH----HHHHHHHHHHHHHHHHhHHHhhHHH-HHHhhHHHHHHH-HHHHHHHhh----------h
Q 012561 154 CAEMELALRNKEEELNL----IIVELRKSFASLQEKLAKEESDKLA-ALDSLAREKETR-LNMERSHAS----------L 217 (461)
Q Consensus 154 ~~e~E~~lk~k~eEL~~----~i~ELr~~~~SLqe~L~keeseKl~-a~~s~~kEkEaR-~~~E~~~~~----------L 217 (461)
..+++.+++.+.+...- .|+.|.+...+|.|+++ +.+|.. .++++++.+.+. -++-+.++. .
T Consensus 215 ~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~--e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~ 292 (581)
T KOG0995|consen 215 SSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMIN--EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHM 292 (581)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHH
Confidence 56788888888877665 56778888889999888 444433 455555555422 122222222 2
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhh
Q 012561 218 SEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYN 256 (461)
Q Consensus 218 seeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYN 256 (461)
...|++++.|+..-..++..++-++.+|+ |---+|-|+
T Consensus 293 ~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk-~~Ie~Q~iS 330 (581)
T KOG0995|consen 293 EKKLEMLKSEIEEKEEEIEKLQKENDELK-KQIELQGIS 330 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCC
Confidence 23344444444444444445555555554 333345443
No 398
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=33.96 E-value=2.5e+02 Score=24.01 Aligned_cols=55 Identities=24% Similarity=0.367 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 012561 195 AALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYN 249 (461)
Q Consensus 195 ~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYN 249 (461)
.|++++++-.+.|.......+.+-+++.++..+..++.+++--...=-.+|.+=|
T Consensus 15 ~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~ 69 (89)
T PF13747_consen 15 AAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEAN 69 (89)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHH
No 399
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=33.88 E-value=7.4e+02 Score=28.23 Aligned_cols=47 Identities=13% Similarity=0.181 Sum_probs=34.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH
Q 012561 306 DEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE 352 (461)
Q Consensus 306 ~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE 352 (461)
..-+|+-+++..-+.++-.||++-.++=-|+.-..-+|.++++-.++
T Consensus 201 ~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qk 247 (596)
T KOG4360|consen 201 GDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQK 247 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 45677777777777888888887777777777777777777766555
No 400
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=33.83 E-value=5.9e+02 Score=26.86 Aligned_cols=87 Identities=22% Similarity=0.333 Sum_probs=45.2
Q ss_pred hHHhhHhHHHHHHHHHHH-HHHHHHh--hhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHH
Q 012561 108 YKERCENMMDYIKRLRLC-IKWFQEL--EGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQE 184 (461)
Q Consensus 108 yKgr~EqM~dyIKrLr~C-IrWfqel--E~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe 184 (461)
||.||--.-+-|+.||-- ++-++.. |+-|+. -.|-.-|+..++.-..+-..+...+|-|- .+|+-
T Consensus 46 ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~is--N~LlKkl~~l~keKe~L~~~~e~EEE~lt----------n~L~r 113 (310)
T PF09755_consen 46 EKARCKHLQEENRALREASVRIQAKAEQEEEFIS--NTLLKKLQQLKKEKETLALKYEQEEEFLT----------NDLSR 113 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH
Confidence 788888888888888743 3333332 333322 12333444444444444333333222221 34555
Q ss_pred HHhHHHhhHHHHHHhhHHHHHH
Q 012561 185 KLAKEESDKLAALDSLAREKET 206 (461)
Q Consensus 185 ~L~keeseKl~a~~s~~kEkEa 206 (461)
+|.+...+|.+.=..++.|.|.
T Consensus 114 kl~qLr~EK~~lE~~Le~EqE~ 135 (310)
T PF09755_consen 114 KLNQLRQEKVELENQLEQEQEY 135 (310)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH
Confidence 6666666666666666666655
No 401
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=33.78 E-value=3.6e+02 Score=30.97 Aligned_cols=51 Identities=22% Similarity=0.358 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhh
Q 012561 224 AQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGE 274 (461)
Q Consensus 224 ~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~e 274 (461)
...+....-..+.-+..+.+||++=|.+|+-|+--|+..++.....+.+..
T Consensus 413 e~~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~ 463 (652)
T COG2433 413 ERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFR 463 (652)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777778888888888888888888777766655555444443
No 402
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=33.71 E-value=87 Score=32.60 Aligned_cols=16 Identities=38% Similarity=0.611 Sum_probs=8.7
Q ss_pred HHHHHHHHhHHHHhhh
Q 012561 404 KLINELRNHLEDAEYK 419 (461)
Q Consensus 404 ~~i~eLq~RLadaE~k 419 (461)
+.|..|.++|.|.|-.
T Consensus 172 k~i~~l~~kl~DlEnr 187 (370)
T PF02994_consen 172 KRIKKLEDKLDDLENR 187 (370)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4455555666665543
No 403
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=33.66 E-value=14 Score=40.38 Aligned_cols=62 Identities=21% Similarity=0.402 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHH
Q 012561 136 YAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAAL 197 (461)
Q Consensus 136 y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~ 197 (461)
|-.|+-.|+--|++..++..|.|..|..++++++.++.+-+..++.=+++|..-.-||-.=|
T Consensus 374 YEqEI~~LkErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~RLedSE~RLr~QQ~eKd~qm 435 (495)
T PF12004_consen 374 YEQEIQSLKERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQARLEDSEERLRRQQEEKDSQM 435 (495)
T ss_dssp --------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhHHHH
Confidence 78899999999999999999999999999999888888887777777776666555553333
No 404
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=33.44 E-value=5.4e+02 Score=26.30 Aligned_cols=94 Identities=15% Similarity=0.183 Sum_probs=51.8
Q ss_pred HHHHHH-hHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhh---hhhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhh
Q 012561 344 TAEVIK-HKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKL---EVSDLSALETKTEFEGQKKLINELRNHLEDAEYK 419 (461)
Q Consensus 344 ~aE~~~-ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKL---k~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~k 419 (461)
..|+.+ |.- -.+.++++..-|..-|..|+ .|+.++ +.++. .....+..-..+..-=....+---.
T Consensus 242 ~~eL~k~f~~---~~~~i~~~~~~Q~~ll~~i~----~~n~~f~~~~~~~~----~~~~re~~lq~L~~Ay~~y~el~~n 310 (339)
T cd09235 242 VEELDRVYGP---LQKQVQESLSRQESLLANIQ----VAHQEFSKEKQSNS----GANEREEVLKDLAAAYDAFMELTAN 310 (339)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhcccc----hhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 445544 665 34566777777766555444 455554 22221 1223333333333323333444445
Q ss_pred hhhhHHhHHhhhhhhhhhcccceeeeeec
Q 012561 420 LIEGEKLRKRLHNTILELEVNLSSSALFR 448 (461)
Q Consensus 420 iiEGEkLRKKLHNTILELKGNIRv~crvr 448 (461)
|-+|-+.=..|...+.-+..++.-||.-|
T Consensus 311 l~eG~kFY~dL~~~~~~~~~~~~~fv~~R 339 (339)
T cd09235 311 LKEGTKFYNDLTEILVKFQNKCSDFVFAR 339 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 66788888888888888888888887544
No 405
>cd04784 HTH_CadR-PbrR Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators. Helix-turn-helix (HTH) CadR and PbrR transcription regulators including Pseudomonas aeruginosa CadR and Ralstonia metallidurans PbrR that regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which form a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=33.33 E-value=2.9e+02 Score=23.97 Aligned_cols=34 Identities=24% Similarity=0.263 Sum_probs=22.5
Q ss_pred HHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHh
Q 012561 154 CAEMELALRNKEEELNLIIVELRKSFASLQEKLA 187 (461)
Q Consensus 154 ~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~ 187 (461)
|.+....+..++++++..|.+|+.....|+..+.
T Consensus 77 ~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 110 (127)
T cd04784 77 CAEVNALIDEHLAHVRARIAELQALEKQLQALRE 110 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566777777777777777776666665443
No 406
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=33.32 E-value=7.8e+02 Score=28.12 Aligned_cols=48 Identities=17% Similarity=0.261 Sum_probs=31.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHH-HHHHHhHHHhhhhhhh
Q 012561 213 SHASLSEDLGKAQEELQSANQRIASINDMYKL-LQEYNSSLQHYNTKLQ 260 (461)
Q Consensus 213 ~~~~LseeL~k~q~E~~~anqqi~slqDmyKR-LQEYNTSLQQYNSkLQ 260 (461)
.+..|..+|++++.++.++.+.+-.+++-+.+ .-+-=+-+++||+-++
T Consensus 340 Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~ 388 (581)
T KOG0995|consen 340 ERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIR 388 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888888888887774432 2223344555555443
No 407
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=33.23 E-value=3.3e+02 Score=23.87 Aligned_cols=60 Identities=17% Similarity=0.309 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHH
Q 012561 115 MMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVE 174 (461)
Q Consensus 115 M~dyIKrLr~CIrWfqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~E 174 (461)
..-+++=+-++|-|+...=+......+.|+..+......+......++...++++..-.|
T Consensus 57 ~~klfrLaQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 57 FLKLFRLAQLSIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666667778888777666666777777777777777776666666665555554443
No 408
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=32.89 E-value=1.2e+02 Score=25.47 Aligned_cols=44 Identities=23% Similarity=0.255 Sum_probs=39.1
Q ss_pred HHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhh
Q 012561 377 QLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKL 420 (461)
Q Consensus 377 QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~ki 420 (461)
+|..--.+|.-.|++.-+...-|++=-.++...+.+|.+||.+|
T Consensus 13 ~LE~Iv~~LE~~~l~Leesl~lyeeG~~L~k~C~~~L~~aE~ki 56 (76)
T PRK14063 13 QLEHLVSKLEQGDVPLEEAISYFKEGMELSKLCDEKLKNVQEQM 56 (76)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444568889999999999999999999999999999999987
No 409
>PRK12715 flgK flagellar hook-associated protein FlgK; Provisional
Probab=32.80 E-value=7.8e+02 Score=27.94 Aligned_cols=92 Identities=22% Similarity=0.317 Sum_probs=59.4
Q ss_pred HHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHH----HHHhhHHHH
Q 012561 241 MYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDE----AMRQKDALV 316 (461)
Q Consensus 241 myKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~E----a~kQK~~L~ 316 (461)
+-..|+.|=.+||.+.++=-.. -.+..+++....|=.+++++-.+|...+..-+. .+.+-..|.
T Consensus 105 ls~~l~~ff~a~q~la~~P~~~------------~~Rq~vl~~A~~L~~~fn~~~~~L~~~~~~~n~~I~~~V~~iN~l~ 172 (649)
T PRK12715 105 ISVPLQTFFDSIGQLNSTPDNI------------ATRGVVLKQSQLLAQQFNSLQTKLEEYERNSTLQVTESVKIINRIT 172 (649)
T ss_pred HHHHHHHHHHHHHHHHHCCCCH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777766543222 234556666666666666666666665554443 345667777
Q ss_pred HHHHHHHHHHhh------hhhhhhhhHHHHHHHH
Q 012561 317 HEVASMRVELQQ------VRDDRDHQLSQVQALT 344 (461)
Q Consensus 317 ~Ev~~LR~ELqq------vRdDRDr~~~QvqsL~ 344 (461)
+++..|=.++.. .+|.||+.+.++..+.
T Consensus 173 ~qIA~LN~qI~~~~~~ndLlDqRD~ll~eLS~~v 206 (649)
T PRK12715 173 KELAEVNGKLLGNNNIPELLDHRDELLKQLSGYT 206 (649)
T ss_pred HHHHHHHHHHhcCCCchHhHHHHHHHHHHHHhhc
Confidence 777777776654 7888998888777665
No 410
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=32.70 E-value=2e+02 Score=25.15 Aligned_cols=35 Identities=23% Similarity=0.180 Sum_probs=25.9
Q ss_pred hHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHh
Q 012561 153 KCAEMELALRNKEEELNLIIVELRKSFASLQEKLA 187 (461)
Q Consensus 153 ~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~ 187 (461)
.|.+.-..+..+.++++.-|.+|......|+..+.
T Consensus 76 ~~~~~~~~l~~~~~~l~~~i~~L~~~~~~l~~~~~ 110 (127)
T cd01108 76 ASADVKALALEHIAELERKIAELQAMRRTLQQLAD 110 (127)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667888888888888888888777776654
No 411
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=32.65 E-value=6.1e+02 Score=26.68 Aligned_cols=105 Identities=24% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH---------------hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhh
Q 012561 320 ASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE---------------LAVSSEDLEARCASQSNQIRSLSDQLAAAEEK 384 (461)
Q Consensus 320 ~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE---------------l~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eK 384 (461)
+.|-.+|+|+----....+.+|-|+.|+...|| |.-...-+-+.|-++++.|+.|++ ||--
T Consensus 48 aelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQ----aNDd 123 (333)
T KOG1853|consen 48 AELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQ----ANDD 123 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccH
Q ss_pred hhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhhhhHHhHHhhh
Q 012561 385 LEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLH 431 (461)
Q Consensus 385 Lk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~kiiEGEkLRKKLH 431 (461)
|..|.--.+-.-..|+ ..+...-+|-|=.|-.|.|-|.|=--.|
T Consensus 124 LErakRati~sleDfe---qrLnqAIErnAfLESELdEke~llesvq 167 (333)
T KOG1853|consen 124 LERAKRATIYSLEDFE---QRLNQAIERNAFLESELDEKEVLLESVQ 167 (333)
T ss_pred HHHhhhhhhhhHHHHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHH
No 412
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=32.62 E-value=4.8e+02 Score=25.48 Aligned_cols=31 Identities=23% Similarity=0.403 Sum_probs=24.8
Q ss_pred HhhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Q 012561 352 ELAVSSEDLEARCASQSNQIRSLSDQLAAAE 382 (461)
Q Consensus 352 El~~k~~~LEetCssQ~eqI~~Lq~QLa~A~ 382 (461)
++..+.++-|..|+...+|+.-++.=+..|+
T Consensus 61 dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae 91 (178)
T PF14073_consen 61 DLSSQLSAAETRCSLLEKQLEYMRKMVESAE 91 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778888999999998888888777666655
No 413
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=32.57 E-value=75 Score=32.23 Aligned_cols=52 Identities=33% Similarity=0.535 Sum_probs=40.4
Q ss_pred ccccHHHHHHHHhhhhhccCCCC---hHHhhHhHHHHHHHHHHHHHHHHHhhhhhHH
Q 012561 85 IEFTREDVEALLSEKMRYKNKFN---YKERCENMMDYIKRLRLCIKWFQELEGDYAF 138 (461)
Q Consensus 85 ieFtredVeALLnEKmk~k~Kfd---yKgr~EqM~dyIKrLr~CIrWfqelE~~y~~ 138 (461)
|+|--||| .|-+=|+-.|+|. .|+||++=.--.=..+.|||+|+--|.-.+-
T Consensus 130 idfk~dD~--~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~NCIk~Ye~AEe~n~~ 184 (280)
T KOG4591|consen 130 IDFKEDDE--FLLELCELANRFQLELLKERCEKGLGALLHVDNCIKFYEFAEELNAR 184 (280)
T ss_pred cccccchH--HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHhhHH
Confidence 67776665 4567788889996 5899999877778899999999977765443
No 414
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=32.57 E-value=2.4e+02 Score=27.94 Aligned_cols=39 Identities=23% Similarity=0.473 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHH
Q 012561 338 SQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLA 379 (461)
Q Consensus 338 ~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa 379 (461)
...+.|..++++|-| |..+|-.|||+=.-.|+.|+.-|.
T Consensus 79 eel~~ld~~i~~l~e---k~q~l~~t~s~veaEik~L~s~Lt 117 (201)
T KOG4603|consen 79 EELQVLDGKIVALTE---KVQSLQQTCSYVEAEIKELSSALT 117 (201)
T ss_pred HHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345667778888777 888888999998888888876543
No 415
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=32.56 E-value=1.4e+02 Score=32.84 Aligned_cols=95 Identities=24% Similarity=0.278 Sum_probs=52.0
Q ss_pred HHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHH-HHHHHHHH
Q 012561 269 SIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQ-VQALTAEV 347 (461)
Q Consensus 269 ~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~Q-vqsL~aE~ 347 (461)
.++-+-=|=+|=-+||.+|=|.++.+..+ ++..+++-+.|..|-+.||...+.|. .++.+ |++-..
T Consensus 46 e~kalGiegDTP~DTlrTlva~~k~~r~~-------~~~l~~~N~~l~~eN~~L~~r~~~id----~~i~~av~~~~~-- 112 (472)
T TIGR03752 46 ELKALGIEGDTPADTLRTLVAEVKELRKR-------LAKLISENEALKAENERLQKREQSID----QQIQQAVQSETQ-- 112 (472)
T ss_pred hhHhcCCCCCCccchHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhhHH----HHHHHHHHhhhH--
Confidence 34444445556677888888855555544 55567777788888887776555442 22222 111111
Q ss_pred HHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHH
Q 012561 348 IKHKELAVSSEDLEARCASQSNQIRSLSDQLAA 380 (461)
Q Consensus 348 ~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~ 380 (461)
++......|.+.-..-..+|..|+.||..
T Consensus 113 ----~~~~~~~ql~~~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 113 ----ELTKEIEQLKSERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 12223333333333344477778888754
No 416
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=32.48 E-value=73 Score=27.31 Aligned_cols=31 Identities=35% Similarity=0.487 Sum_probs=27.6
Q ss_pred hhhhHHhHHHHHHHHHhHHHHhhhhhhhHHh
Q 012561 396 KTEFEGQKKLINELRNHLEDAEYKLIEGEKL 426 (461)
Q Consensus 396 rte~E~Qk~~i~eLq~RLadaE~kiiEGEkL 426 (461)
+.+++.-+..|.++|.||-+.|.+.-|-|++
T Consensus 7 ~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN~ 37 (83)
T PF14193_consen 7 RAEIEKTKEKIAELQARLKELEAQKTEAENL 37 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888999999999999999999999876
No 417
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=32.32 E-value=6.9e+02 Score=27.19 Aligned_cols=16 Identities=0% Similarity=-0.089 Sum_probs=9.1
Q ss_pred ccCCCChHHhhHhHHH
Q 012561 102 YKNKFNYKERCENMMD 117 (461)
Q Consensus 102 ~k~KfdyKgr~EqM~d 117 (461)
|+++|---|+.=...+
T Consensus 105 grs~~~iNg~~v~~~~ 120 (563)
T TIGR00634 105 GRSRAYLNGKPVSASS 120 (563)
T ss_pred CceEEEECCEEccHHH
Confidence 5677666666554433
No 418
>PF08738 Gon7: Gon7 family; InterPro: IPR014849 In Saccharomyces cerevisiae Gon7 is a member of the KEOPS protein complex. A protein complex proposed to be involved in transcription and promoting telomere uncapping and telomere elongation [].
Probab=32.21 E-value=64 Score=28.72 Aligned_cols=28 Identities=18% Similarity=0.342 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhHHHHH
Q 012561 170 LIIVELRKSFASLQEKLAKEESDKLAAL 197 (461)
Q Consensus 170 ~~i~ELr~~~~SLqe~L~keeseKl~a~ 197 (461)
.-+++||.++..||..++..-+++|+.-
T Consensus 54 t~L~~LR~~lt~lQddIN~fLTeRMe~d 81 (103)
T PF08738_consen 54 TYLSELRAQLTTLQDDINEFLTERMEED 81 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999753
No 419
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=32.01 E-value=3.4e+02 Score=23.47 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=10.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHchH
Q 012561 143 LRNALELSEQKCAEMELALRNKE 165 (461)
Q Consensus 143 L~~~Le~~ek~~~e~E~~lk~k~ 165 (461)
|...++....+..+++..+..-.
T Consensus 3 l~~~~~~l~~~~~~l~~~l~~~~ 25 (202)
T PF01442_consen 3 LDDRLDSLSSRTEELEERLEELS 25 (202)
T ss_dssp HHHHHHHHHHHHHHHHHCHCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455544444444
No 420
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=31.91 E-value=4.9e+02 Score=25.37 Aligned_cols=35 Identities=26% Similarity=0.234 Sum_probs=19.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 012561 111 RCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRN 145 (461)
Q Consensus 111 r~EqM~dyIKrLr~CIrWfqelE~~y~~EqekL~~ 145 (461)
|+.+..++.+.|..|++==-.+|..|+...-+|-.
T Consensus 13 ~~~~G~~~ckel~~f~kERa~IE~~YAK~L~kLa~ 47 (239)
T cd07658 13 YVKQGGDFCKELATVLQERAELELNYAKGLSKLSG 47 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554445556666666555543
No 421
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=31.47 E-value=4.3e+02 Score=24.55 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=13.2
Q ss_pred HHHHHHHHHhHHHhhhhhhhccHHHHH
Q 012561 241 MYKLLQEYNSSLQHYNTKLQKDIDAAH 267 (461)
Q Consensus 241 myKRLQEYNTSLQQYNSkLQaDl~~~~ 267 (461)
+..++++-|+-+-.==+.|-++++.+.
T Consensus 125 ~~~ki~e~~~ki~~ei~~lr~~iE~~K 151 (177)
T PF07798_consen 125 QELKIQELNNKIDTEIANLRTEIESLK 151 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444433345666666543
No 422
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=30.92 E-value=4.7e+02 Score=24.85 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH
Q 012561 313 DALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE 352 (461)
Q Consensus 313 ~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE 352 (461)
..|..++..+|.+|++.=...|.+..+|......+..|-+
T Consensus 18 ~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ 57 (158)
T PF09486_consen 18 RRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDA 57 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3344444444444444444444444444444444444444
No 423
>PF14282 FlxA: FlxA-like protein
Probab=30.59 E-value=2.1e+02 Score=24.86 Aligned_cols=55 Identities=24% Similarity=0.354 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHhhhh---h-hchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhhh
Q 012561 368 SNQIRSLSDQLAAAEEKLE---V-SDLSALETKTEFEGQKKLINELRNHLEDAEYKLIE 422 (461)
Q Consensus 368 ~eqI~~Lq~QLa~A~eKLk---~-aDlsa~etrte~E~Qk~~i~eLq~RLadaE~kiiE 422 (461)
..+|+.|++|+....++|+ - .++++.+.......-...|..|+..|+....+..+
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~ 76 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAE 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666665555553 1 34566666666666666777777777765555443
No 424
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=30.44 E-value=3.5e+02 Score=23.18 Aligned_cols=34 Identities=35% Similarity=0.395 Sum_probs=23.0
Q ss_pred hHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHH
Q 012561 153 KCAEMELALRNKEEELNLIIVELRKSFASLQEKL 186 (461)
Q Consensus 153 ~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L 186 (461)
.+.+....+..+.+++..-|.+|+.....|...+
T Consensus 76 ~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (123)
T cd04770 76 PCAEVRALLEEKLAEVEAKIAELQALRAELAGLL 109 (123)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777777777766666544
No 425
>PRK06798 fliD flagellar capping protein; Validated
Probab=30.11 E-value=2.5e+02 Score=30.03 Aligned_cols=98 Identities=16% Similarity=0.231 Sum_probs=58.5
Q ss_pred CCcccccHHHHHHHHhhhhhccCC-C-ChHHhhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHH
Q 012561 82 CGTIEFTREDVEALLSEKMRYKNK-F-NYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMEL 159 (461)
Q Consensus 82 ~~~ieFtredVeALLnEKmk~k~K-f-dyKgr~EqM~dyIKrLr~CIrWfqelE~~y~~EqekL~~~Le~~ek~~~e~E~ 159 (461)
.|.++|..+-.++-|.+....=.. | ...|=..+|-+|++. |..-.+.+-..+.-|..+++..+.+...+|.
T Consensus 328 ~G~L~lD~~kL~~al~~np~~V~~lF~g~~Gia~~l~~~l~~-------~~~~~G~i~~r~~~l~~~i~~l~~~~~~~e~ 400 (440)
T PRK06798 328 EGTMKVDEEALKKALKENPDAAKQFFFGINGLGKEMEKSLDK-------IFGDEGIIGERSKSIDNRVSKLDLKITDIDT 400 (440)
T ss_pred CCCEEEcHHHHHHHHHHCHHHHHHHhcCCCcHHHHHHHHHHh-------hhCCCceeehhhhHHHHHHHHHHHHHHHHHH
Confidence 577877665555555555443111 1 123444555556554 3345566666777778888888888777777
Q ss_pred HHHchHHHHHHHHHHHHHHHHHHHHHH
Q 012561 160 ALRNKEEELNLIIVELRKSFASLQEKL 186 (461)
Q Consensus 160 ~lk~k~eEL~~~i~ELr~~~~SLqe~L 186 (461)
.|...++.|..-..-|-..++.|+.+.
T Consensus 401 rl~~~e~~l~~qf~ale~~ms~lnsQ~ 427 (440)
T PRK06798 401 QNKQKQDNIVDKYQKLESTLAALDSQL 427 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777766666555555555555555443
No 426
>PRK08724 fliD flagellar capping protein; Validated
Probab=29.97 E-value=3.5e+02 Score=31.15 Aligned_cols=56 Identities=11% Similarity=0.105 Sum_probs=37.5
Q ss_pred HhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHH
Q 012561 131 ELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKL 186 (461)
Q Consensus 131 elE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L 186 (461)
....++-..+..|..+++..+.+...+|..+..+.--|+..+..|..+-++|.-.|
T Consensus 617 ~R~~sL~~~i~~l~dqi~~Le~Rle~~E~Ry~~QFtAMD~~msqMnsQ~s~L~s~l 672 (673)
T PRK08724 617 TREKSLREQNYRLNDDQVALDRRMESLEKRTHAKFAAMQDATGKMQGQLGGMMNAL 672 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555556666667777777777777777777777777777777777665443
No 427
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=29.81 E-value=2.5e+02 Score=25.77 Aligned_cols=56 Identities=18% Similarity=0.395 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHH----HHHHHHHHHHhHHHhhHHHHHHhhHHHH
Q 012561 142 RLRNALELSEQKCAEMELALRNKEEELNLIIVELR----KSFASLQEKLAKEESDKLAALDSLAREK 204 (461)
Q Consensus 142 kL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr----~~~~SLqe~L~keeseKl~a~~s~~kEk 204 (461)
.|..++...+..|..+|-+.+-. +.|.+ .+..+++.++.++.++.++..+.+.--.
T Consensus 24 ~l~~~i~~~d~el~QLefq~kr~-------~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql 83 (131)
T PF11068_consen 24 ELQEQIQQLDQELQQLEFQGKRM-------IKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQL 83 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666655544 44444 6788888888888888887776654433
No 428
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=29.38 E-value=66 Score=27.08 Aligned_cols=39 Identities=33% Similarity=0.607 Sum_probs=31.8
Q ss_pred ccHHHHHHHHhhhhhccCCCChHHhhHhHHHHHHHHHHH--HHHHHHh
Q 012561 87 FTREDVEALLSEKMRYKNKFNYKERCENMMDYIKRLRLC--IKWFQEL 132 (461)
Q Consensus 87 FtredVeALLnEKmk~k~KfdyKgr~EqM~dyIKrLr~C--IrWfqel 132 (461)
||.+|+|.+..+. +.||+++++..++.+|.-| -.||+.+
T Consensus 32 L~~~~~e~I~a~~-------~~~g~~~aa~~Ll~~L~~~r~~~wf~~F 72 (88)
T cd08812 32 LTDEDKEQILAEE-------RNKGNIAAAEELLDRLERCDKPGWFQAF 72 (88)
T ss_pred cCHHHHHHHHHHH-------hccChHHHHHHHHHHHHHhccCCcHHHH
Confidence 9999999887743 5678999999999999876 5698764
No 429
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=29.28 E-value=3.6e+02 Score=26.79 Aligned_cols=70 Identities=24% Similarity=0.342 Sum_probs=49.4
Q ss_pred HHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhh
Q 012561 178 SFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNT 257 (461)
Q Consensus 178 ~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNS 257 (461)
...-|-.+|.++|+||+.+|--++. |-.|.+ .-++..-..|.+|-|+|.|||+=|--|---++
T Consensus 17 skeel~~rLR~~E~ek~~~m~~~g~--------------lm~evN---rrlQ~hl~EIR~LKe~NqkLqedNqELRdLCC 79 (195)
T PF10226_consen 17 SKEELVRRLRRAEAEKMSLMVEHGR--------------LMKEVN---RRLQQHLNEIRGLKEVNQKLQEDNQELRDLCC 79 (195)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh--------------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445667888899999988865542 333333 23444556788999999999999999988888
Q ss_pred hhhccHH
Q 012561 258 KLQKDID 264 (461)
Q Consensus 258 kLQaDl~ 264 (461)
-|-.|--
T Consensus 80 FLDddRq 86 (195)
T PF10226_consen 80 FLDDDRQ 86 (195)
T ss_pred ccchhHH
Confidence 8766543
No 430
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=29.26 E-value=3.8e+02 Score=23.98 Aligned_cols=54 Identities=17% Similarity=0.273 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHH
Q 012561 136 YAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKE 189 (461)
Q Consensus 136 y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~ke 189 (461)
....+.+|+.+|+.++.+...-..++..-....-....+|..+|..|.+-|++-
T Consensus 23 ~~~~q~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y~~l~~Hla~~ 76 (128)
T PF06295_consen 23 NQQKQAKLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDYQKLYQHLAKG 76 (128)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457789999999999999999999999999999999999999999999998864
No 431
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=28.98 E-value=8.8e+02 Score=27.36 Aligned_cols=34 Identities=12% Similarity=0.134 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhH
Q 012561 121 RLRLCIKWFQELEGDYAFEHERLRNALELSEQKC 154 (461)
Q Consensus 121 rLr~CIrWfqelE~~y~~EqekL~~~Le~~ek~~ 154 (461)
.-.--+.|+.+.=...-.+.+....+|+.-++++
T Consensus 264 ~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 264 QDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445577887776666666666666666666655
No 432
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=28.96 E-value=3.8e+02 Score=23.09 Aligned_cols=28 Identities=25% Similarity=0.270 Sum_probs=18.2
Q ss_pred HHhhHHHHHHHHHHHHHHhhhhhhhhhh
Q 012561 309 MRQKDALVHEVASMRVELQQVRDDRDHQ 336 (461)
Q Consensus 309 ~kQK~~L~~Ev~~LR~ELqqvRdDRDr~ 336 (461)
+.+.+.=.+|...-..||..+-+|+.-+
T Consensus 26 ~~~le~~~~E~~~v~~eL~~l~~d~~vy 53 (110)
T TIGR02338 26 KQQVEAQLKEAEKALEELERLPDDTPVY 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcchhH
Confidence 4455555666777777777777776644
No 433
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=28.77 E-value=1.5e+02 Score=25.22 Aligned_cols=45 Identities=22% Similarity=0.250 Sum_probs=39.4
Q ss_pred HHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhh
Q 012561 377 QLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLI 421 (461)
Q Consensus 377 QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~kii 421 (461)
+|..--.+|.-.|++..+....|++=-.++...+.+|..||.+|-
T Consensus 15 ~LEeIV~~LE~~~l~Lees~~lyeeG~~L~k~C~~~L~~ae~kI~ 59 (80)
T PRK14067 15 RLQEIVDALEGGDLPLEESVALYKEGLGLARACREQLAKARNEIR 59 (80)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455678889999999999999999999999999999998873
No 434
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=28.66 E-value=4.1e+02 Score=23.41 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH
Q 012561 314 ALVHEVASMRVELQQVRDDRDHQLSQVQALTAE 346 (461)
Q Consensus 314 ~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE 346 (461)
.|..-+..|..+|..+++.-+....+++.+.++
T Consensus 105 ~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 105 ELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444455544443
No 435
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=28.56 E-value=3.7e+02 Score=22.88 Aligned_cols=33 Identities=33% Similarity=0.444 Sum_probs=24.1
Q ss_pred HHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHh
Q 012561 155 AEMELALRNKEEELNLIIVELRKSFASLQEKLA 187 (461)
Q Consensus 155 ~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~ 187 (461)
.+.-..+..++++|..-+.+|......|+..+.
T Consensus 74 ~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~l~ 106 (108)
T cd01107 74 DELRKLLREKLAELEAEIEELQRILRLLEDRLK 106 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566667777888888888888777777776553
No 436
>PRK07737 fliD flagellar capping protein; Validated
Probab=28.54 E-value=4.9e+02 Score=28.29 Aligned_cols=107 Identities=12% Similarity=0.145 Sum_probs=63.9
Q ss_pred CCCcccccHHHHHHHHhhhhhc----------cCCCChHHhhHhHHHHHHHHHHHH------HHHHHhhhhhHHHHHHHH
Q 012561 81 ECGTIEFTREDVEALLSEKMRY----------KNKFNYKERCENMMDYIKRLRLCI------KWFQELEGDYAFEHERLR 144 (461)
Q Consensus 81 e~~~ieFtredVeALLnEKmk~----------k~KfdyKgr~EqM~dyIKrLr~CI------rWfqelE~~y~~EqekL~ 144 (461)
..|.++|..+-.++-|.+-+.+ ...++..|=..+|-+|++.+=--+ --+...+..+-.++..+.
T Consensus 375 ~~G~L~iD~~kl~~Al~~n~~~V~~lF~~~~~~~~~~~~Gia~~l~~~l~~~~~~~~~~~g~g~~~~~~~~l~~~i~~l~ 454 (501)
T PRK07737 375 DGGKLEIDETKLRQKIKENPDAVYQLFNSGGSSSNYNEKGIARRLRDTLKETIKSIEQKAGNTTMTNQQFAIGKDLNQIE 454 (501)
T ss_pred cCCeEEEcHHHHHHHHHHCHHHHHHHhcCCCCCcccccCcHHHHHHHHHHHHHhhhhhhcCCccccchhHHHHHHHHHHH
Confidence 4577877654444444443332 112334566677777777642110 011223344455666777
Q ss_pred HHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHh
Q 012561 145 NALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLA 187 (461)
Q Consensus 145 ~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~ 187 (461)
.+++..+.+....|..+..|.--|+..+..|..+-+.|...|.
T Consensus 455 ~~i~~~~~rl~~~e~ry~~qf~ale~~~s~mnsq~s~L~~~l~ 497 (501)
T PRK07737 455 TQIDRFQDRLKQIEDRYYKKFSAMEKAIQKANEQSMYLMNALG 497 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7777777777777777777777777777777777777776664
No 437
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=28.36 E-value=7.1e+02 Score=26.11 Aligned_cols=31 Identities=26% Similarity=0.210 Sum_probs=18.0
Q ss_pred HHHHHhhhhhhh----hhhHHHHHHHHHHHHHhHH
Q 012561 322 MRVELQQVRDDR----DHQLSQVQALTAEVIKHKE 352 (461)
Q Consensus 322 LR~ELqqvRdDR----Dr~~~QvqsL~aE~~~ykE 352 (461)
+..|++|+..-+ +....+.++|..++..++-
T Consensus 329 ~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~ 363 (458)
T COG3206 329 IAAELRQILASLPNELALLEQQEAALEKELAQLKG 363 (458)
T ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 444555544433 3346666777777777666
No 438
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=28.36 E-value=1.2e+03 Score=28.94 Aligned_cols=169 Identities=25% Similarity=0.371 Sum_probs=87.3
Q ss_pred HHHHHHHHhhhhh---ccCCCChHHhhHhHHHHHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHch
Q 012561 89 REDVEALLSEKMR---YKNKFNYKERCENMMDYIKRLRLCIKWF-QELEGDYAFEHERLRNALELSEQKCAEMELALRNK 164 (461)
Q Consensus 89 redVeALLnEKmk---~k~KfdyKgr~EqM~dyIKrLr~CIrWf-qelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k 164 (461)
+++|.=|=|||++ |+.|.||-- |-+|--=++-. -.|=+.|+.|.-|--++|+..
T Consensus 1137 qqElklLRnEK~Rmh~~~dkVDFSD--------IEkLE~qLq~~~~kL~dAyl~eitKqIsaLe~e-------------- 1194 (1439)
T PF12252_consen 1137 QQELKLLRNEKIRMHSGTDKVDFSD--------IEKLEKQLQVIHTKLYDAYLVEITKQISALEKE-------------- 1194 (1439)
T ss_pred HHHHHHHHhHHHhhccCCCcccHHH--------HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh--------------
Confidence 7788878888776 566777642 11111111111 123455666665533333310
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q 012561 165 EEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKL 244 (461)
Q Consensus 165 ~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKR 244 (461)
.=--+.++...++++-+.+.-.|-=+.+-|.-|+-.+| ---+ -||++++..++..||-+... .
T Consensus 1195 ---~PKnltdvK~missf~d~laeiE~LrnErIKkHGaSke--------PLDl-SDlDkLk~~LQ~iNQ~LV~~-----L 1257 (1439)
T PF12252_consen 1195 ---KPKNLTDVKSMISSFNDRLAEIEFLRNERIKKHGASKE--------PLDL-SDLDKLKGQLQKINQNLVKA-----L 1257 (1439)
T ss_pred ---CCCchhhHHHHHHHHHhhhhHHHHHHHHHhhccCCCCC--------ccch-hhHHHHHHHHHHHHHHHHHH-----H
Confidence 00112244445555554444444333333333433333 2334 58899999999998876431 1
Q ss_pred HHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHH
Q 012561 245 LQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVH 317 (461)
Q Consensus 245 LQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~ 317 (461)
++--=+||=|- ..+-.++++..|-.|+.-|-. |..-|+.| +-|.|||+++.+
T Consensus 1258 In~iR~slnqm-------------e~~tf~~q~~eiq~n~~ll~~----L~~tlD~S----~~a~Kqk~di~k 1309 (1439)
T PF12252_consen 1258 INTIRVSLNQM-------------EVKTFEEQEKEIQQNLQLLDK----LEKTLDDS----DTAQKQKEDIVK 1309 (1439)
T ss_pred HHHHHHHHHHh-------------hhhhhhhhhHHHHHHHHHHHH----HHHHhcch----HHHHHHHHHHHH
Confidence 12222344332 245667788888888765543 44444444 446788887765
No 439
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=28.23 E-value=4.6e+02 Score=23.90 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=12.7
Q ss_pred hhhhhHHHHHHHhhhhhhhhhhhHHH
Q 012561 271 KRGEKEKSAIVENLSTLRGQYISLQE 296 (461)
Q Consensus 271 ~r~eKEK~tivEnls~LrG~~~SLq~ 296 (461)
+.+++|=.-++--|+-|-.+++..+.
T Consensus 80 ~~~q~EldDLL~ll~Dle~K~~kyk~ 105 (136)
T PF04871_consen 80 KEAQSELDDLLVLLGDLEEKRKKYKE 105 (136)
T ss_pred HhhhhhHHHHHHHHHhHHHHHHHHHH
Confidence 34555555555555555444443333
No 440
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=28.06 E-value=20 Score=39.25 Aligned_cols=83 Identities=19% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHH----HHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhH
Q 012561 118 YIKRLR----LCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDK 193 (461)
Q Consensus 118 yIKrLr----~CIrWfqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseK 193 (461)
=|.+|+ ..-|=+.|-|.-.+..-+..+.-|-.-..+..|.|-.|+..-+|-...+-.+.-.+-.+||.|.+|.++.
T Consensus 377 EI~~LkErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~RLedSE~RLr~QQ~eKd~qmksII~RL~~vEeELrre~~~m 456 (495)
T PF12004_consen 377 EIQSLKERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQARLEDSEERLRRQQEEKDSQMKSIISRLMAVEEELRREHAEM 456 (495)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhHHHHHHHHhhhhhhhhhhhhhHHHH
Confidence 455554 4455555555555444445555556667777888888888888887777777788889999999999988
Q ss_pred HHHHHhh
Q 012561 194 LAALDSL 200 (461)
Q Consensus 194 l~a~~s~ 200 (461)
.++|++-
T Consensus 457 ~~~~~~k 463 (495)
T PF12004_consen 457 QAVLDHK 463 (495)
T ss_dssp -------
T ss_pred hcccccc
Confidence 8888653
No 441
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=28.05 E-value=2.8e+02 Score=27.49 Aligned_cols=52 Identities=25% Similarity=0.385 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHc-----hHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 012561 139 EHERLRNALELSEQKCAEMELALRN-----KEEELNLIIVELRKSFASLQEKLAKEE 190 (461)
Q Consensus 139 EqekL~~~Le~~ek~~~e~E~~lk~-----k~eEL~~~i~ELr~~~~SLqe~L~kee 190 (461)
++-+|...+.+..+-|..+|++++. -++|+..-|.+|++.|+--.++|.+-.
T Consensus 87 ~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k 143 (201)
T KOG4603|consen 87 KIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIK 143 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666667788889999988875 356777777777777777777776543
No 442
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=27.97 E-value=2.5e+02 Score=22.91 Aligned_cols=48 Identities=25% Similarity=0.518 Sum_probs=34.4
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhh
Q 012561 276 EKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVR 330 (461)
Q Consensus 276 EK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvR 330 (461)
-|-.|-|-|+.+++.+.+++-+| +|+=++-.+|..||..|+.++...|
T Consensus 12 akQ~~~eEL~kvk~~n~~~e~kL-------qeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 12 AKQAIQEELTKVKSANLAFESKL-------QEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46777788888777666655554 5566677788888888888876655
No 443
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=27.89 E-value=3e+02 Score=25.93 Aligned_cols=54 Identities=19% Similarity=0.305 Sum_probs=46.8
Q ss_pred HHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 012561 196 ALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYN 249 (461)
Q Consensus 196 a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYN 249 (461)
|..|-.|=...+...|+..+.|..+++++..|..++-..+.-+---|.+|+-+-
T Consensus 65 A~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~ 118 (135)
T KOG4196|consen 65 AQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNSA 118 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 556777888889999999999999999999999999999988888888887653
No 444
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=27.86 E-value=1.8e+02 Score=22.32 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=8.2
Q ss_pred hhHHHHHHHHHHHHHHh
Q 012561 311 QKDALVHEVASMRVELQ 327 (461)
Q Consensus 311 QK~~L~~Ev~~LR~ELq 327 (461)
.-+.|..|..+|++|++
T Consensus 20 ~~~~L~~E~~~L~aev~ 36 (45)
T PF02183_consen 20 EYDSLKKENEKLRAEVQ 36 (45)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555554444
No 445
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=27.82 E-value=2.8e+02 Score=25.14 Aligned_cols=55 Identities=24% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhc
Q 012561 319 VASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSD 389 (461)
Q Consensus 319 v~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aD 389 (461)
+..|..||-.++ -+|-..=.+|+.+||+ .|.---+--++|-.+|..++++|..+.
T Consensus 9 IkdLeselsk~K------tsq~d~~~~eLEkYkq----------ly~eElk~r~SLs~kL~ktnerLaevs 63 (111)
T PF12001_consen 9 IKDLESELSKMK------TSQEDSNKTELEKYKQ----------LYLEELKLRKSLSNKLNKTNERLAEVS 63 (111)
T ss_pred HHHHHHHHHHhH------hHhhhhhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHh
No 446
>PRK10722 hypothetical protein; Provisional
Probab=27.75 E-value=1.7e+02 Score=29.94 Aligned_cols=51 Identities=33% Similarity=0.305 Sum_probs=38.3
Q ss_pred hhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhh
Q 012561 332 DRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLE 386 (461)
Q Consensus 332 DRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk 386 (461)
=||+|+.++ +|.+|-..|+-|...+ +..--.+++|-..||.+|...++||+
T Consensus 150 wr~~Q~l~l-~LaeEr~Ry~rLQq~s---D~qlD~lrqq~~~Lq~~L~~t~rKLE 200 (247)
T PRK10722 150 WRDGQALQL-ALAEERQRYQKLQQSS---DSELDALRQQQQRLQYQLELTTRKLE 200 (247)
T ss_pred HHHhhHHHH-hHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777766 4888999998854443 35555678888999999999999985
No 447
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=27.67 E-value=5.2e+02 Score=24.28 Aligned_cols=73 Identities=18% Similarity=0.190 Sum_probs=37.4
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHH
Q 012561 124 LCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAA 196 (461)
Q Consensus 124 ~CIrWfqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a 196 (461)
.+-+|....+..--.-.+.|=...=.....|.+.-..++..++.+...+..|+.++..|+.+|..-++.+..+
T Consensus 66 ~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l 138 (221)
T PF04012_consen 66 EAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREEL 138 (221)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555544443333333322222233444444455555666666666666666666666666655555443
No 448
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=27.50 E-value=1.6e+02 Score=24.77 Aligned_cols=46 Identities=26% Similarity=0.341 Sum_probs=40.4
Q ss_pred HHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhh
Q 012561 376 DQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLI 421 (461)
Q Consensus 376 ~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~kii 421 (461)
.+|..-=.+|.-.|++..+...-|++=..++...+.+|.+||.+|-
T Consensus 17 ~~LEeIv~~LE~~~l~Lees~~lyeeg~~L~k~C~~~L~~ae~ki~ 62 (80)
T PRK00977 17 AELEEIVTRLESGDLPLEESLAAFERGVALARQCQKKLQQAEQRVE 62 (80)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556788999999999999999999999999999999998864
No 449
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=27.28 E-value=4.3e+02 Score=23.25 Aligned_cols=43 Identities=28% Similarity=0.357 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 012561 204 KETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQ 246 (461)
Q Consensus 204 kEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQ 246 (461)
.||+.-.++-...|...+++++.++....+++..+++.-.+++
T Consensus 93 ~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 93 DEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666677777777777766666666665555443
No 450
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=27.09 E-value=7.2e+02 Score=25.76 Aligned_cols=128 Identities=22% Similarity=0.251 Sum_probs=80.2
Q ss_pred hhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhH
Q 012561 272 RGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHK 351 (461)
Q Consensus 272 r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~yk 351 (461)
.++|-.+.+-..|+.+...+..|+..|.-.+--.+|.-.-.++|..-...|..+.-... +..+ ++.|...+.+++
T Consensus 93 elqkl~~eLe~vLs~~q~KnekLke~LerEq~wL~Eqqql~~sL~~r~~elk~~~~~~s---e~rv--~~el~~K~~~~k 167 (268)
T PF11802_consen 93 ELQKLISELEMVLSTVQSKNEKLKEDLEREQQWLDEQQQLLESLNKRHEELKNQVETFS---ESRV--FQELKTKIEKIK 167 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc---hHHH--HHHHHHHHHHHH
Confidence 46777888888999999999999999998888888777777777766666665333333 3222 145555555555
Q ss_pred H----hhhhhhH-HHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHH
Q 012561 352 E----LAVSSED-LEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDA 416 (461)
Q Consensus 352 E----l~~k~~~-LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLada 416 (461)
+ |+...+. |++-... .+.=..+..|-+-.+ +.-..|.+-..+|+.|=+|+-++
T Consensus 168 ~~~e~Ll~~LgeFLeeHfPl--------p~~~~~~~Kkk~~~~----e~~~~~~~l~eilE~LmN~l~~~ 225 (268)
T PF11802_consen 168 EYKEKLLSFLGEFLEEHFPL--------PDEQGNAKKKKKGED----EPSAQLITLREILEILMNKLLDS 225 (268)
T ss_pred HHHHHHHHHHHHHHHhcCCC--------Ccccchhhhhhcccc----ccchhhhHHHHHHHHHHHHhcCC
Confidence 4 4444443 3444332 222223333333333 44455777778999999998864
No 451
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=26.92 E-value=4.3e+02 Score=23.11 Aligned_cols=77 Identities=21% Similarity=0.263 Sum_probs=37.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhh
Q 012561 194 LAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRG 273 (461)
Q Consensus 194 l~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~ 273 (461)
-.|.-.+.+=+..+...++....+. -|+.+...+..+ .+..++++-|..-|.-|+..|+.+ +++.+...+..+
T Consensus 41 ~~A~~~lk~~k~~~k~~~~~~~~~~-~l~~~~~~ie~a----~~~~~v~~al~~~~~~Lk~~~~~i--~~~~v~~~~d~~ 113 (171)
T PF03357_consen 41 ERAKIYLKRKKRLEKQLEKLLNQLS-NLESVLLQIETA----QSNQQVVKALKQSSKALKKINKQI--NLDKVEKLMDDF 113 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH----HHHHHHSSS----SHHHHHHHHST--TSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhh--hhhhHHHHHHHH
Confidence 3343333333333333433333322 444444444433 345566777777777788777766 455555555555
Q ss_pred hhHH
Q 012561 274 EKEK 277 (461)
Q Consensus 274 eKEK 277 (461)
+.+-
T Consensus 114 ~e~~ 117 (171)
T PF03357_consen 114 QEEM 117 (171)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 452
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=26.90 E-value=3.8e+02 Score=30.44 Aligned_cols=78 Identities=10% Similarity=0.062 Sum_probs=42.3
Q ss_pred HHhhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHH
Q 012561 109 KERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKL 186 (461)
Q Consensus 109 Kgr~EqM~dyIKrLr~CIrWfqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L 186 (461)
.|=..+|-+|++.+=--=--|.....++-..+..+..+++..+.+....|..+..++--|+..+..|..+-+.|...+
T Consensus 578 ~Gla~~l~~~l~~~t~~~G~i~~r~~~l~~~i~~l~~~i~~~e~rl~~~e~rl~~QFtaME~~msqmnsqss~L~~~~ 655 (661)
T PRK06664 578 NGVAKMLLEYLSPYTQAGGIIYNKVKGLDERIADNNKKIEEYEKKLESKERKLKGKYLTMDQTVKKMKEQSNYLKNFN 655 (661)
T ss_pred CcHHHHHHHHHHHHHcCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777776521000012233444445555555555555666666666666666666666666666666665544
No 453
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=26.85 E-value=2.1e+02 Score=24.98 Aligned_cols=15 Identities=13% Similarity=0.014 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 012561 169 NLIIVELRKSFASLQ 183 (461)
Q Consensus 169 ~~~i~ELr~~~~SLq 183 (461)
+..+..|+..+..|+
T Consensus 47 ~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 47 KARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHhh
Confidence 333334444444333
No 454
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=26.83 E-value=2.5e+02 Score=29.99 Aligned_cols=70 Identities=24% Similarity=0.294 Sum_probs=51.1
Q ss_pred HHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHH--HHHHHHHHHHHhHHh
Q 012561 281 VENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLS--QVQALTAEVIKHKEL 353 (461)
Q Consensus 281 vEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~--QvqsL~aE~~~ykEl 353 (461)
|--++.|-|...-+|.||+..|+--+++.-|--.|.-++++||-+|+|-+. +-.+ .-++|..-.+.|.+|
T Consensus 222 ~~Lvs~Le~eL~~iqaqL~tvks~m~~~nPqi~~LkarieSlrkql~qe~q---~isag~~~~sl~~qaAefq~l 293 (372)
T COG3524 222 MSLVSKLEDELIVIQAQLDTVKSVMNPENPQIPGLKARIESLRKQLLQEKQ---AISAGGSSQSLSNQAAEFQRL 293 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHH---HhcCCCCccchhHHHHHHHHH
Confidence 344566777777888999999998888888999999999999999987432 1111 123666667777773
No 455
>PHA02414 hypothetical protein
Probab=26.68 E-value=1.6e+02 Score=26.70 Aligned_cols=58 Identities=31% Similarity=0.399 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHH
Q 012561 139 EHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAAL 197 (461)
Q Consensus 139 EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~ 197 (461)
|+-.|-.+++..+.+..+=|.--+..-.||+..+.|||.-+-||--.++ ..+||+.++
T Consensus 5 ~in~Lv~~v~~ledKiQ~Gelt~kgdn~eL~~av~ELRdivvslDKd~A-v~sEKqshi 62 (111)
T PHA02414 5 EINNLVSQVETLEDKIQEGELTDKGDNKELEVAVAELRDIVVSLDKDVA-VNSEKQSHI 62 (111)
T ss_pred HHHHHHHHHHHHHHHHhcCccccCCchHHHHHHHHHHHHHHHHhhhHhh-hhHHHhhHH
Confidence 4556777788888888888888888899999999999999999876554 566777665
No 456
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated
Probab=26.60 E-value=8.9e+02 Score=27.43 Aligned_cols=91 Identities=18% Similarity=0.333 Sum_probs=52.6
Q ss_pred HHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHH----HHHhhHHHHHH
Q 012561 243 KLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDE----AMRQKDALVHE 318 (461)
Q Consensus 243 KRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~E----a~kQK~~L~~E 318 (461)
..|+.|=.+||.+.+.=-. . -.+..+++....|=.+++++-.+|...+..-+. .+.+-..|..+
T Consensus 108 ~~L~~Ff~alq~la~~P~~-~-----------~~Rq~vl~~a~~La~~fn~~~~~L~~~~~~~n~~I~~~V~~IN~l~~q 175 (651)
T PRK06945 108 PAITSFFTGLQNVANNPSD-P-----------SARQTMLSNAQTLASQFNAAGQQLDQLRQSVNTQLTSSVTQINSYTKQ 175 (651)
T ss_pred HHHHHHHHHHHHHHhCCCC-H-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666666665543211 1 223455666666666666665555555544443 34455666667
Q ss_pred HHHHHHHHhh-----------hhhhhhhhHHHHHHHHH
Q 012561 319 VASMRVELQQ-----------VRDDRDHQLSQVQALTA 345 (461)
Q Consensus 319 v~~LR~ELqq-----------vRdDRDr~~~QvqsL~a 345 (461)
+..|=.++.. .+|.||+.+.++..+..
T Consensus 176 IA~LN~~I~~~~~~~g~~~ndLlDqRD~ll~eLS~~v~ 213 (651)
T PRK06945 176 IAQLNDQIAKAESSQGQPPNDLLDQRDQLVSELSKLVG 213 (651)
T ss_pred HHHHHHHHHHhhccCCCCcchhHHHHHHHHHHHHhhcC
Confidence 7777666654 57888888877766543
No 457
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=26.57 E-value=4.9e+02 Score=23.60 Aligned_cols=75 Identities=21% Similarity=0.356 Sum_probs=43.3
Q ss_pred HhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhh------HHHHHHHH-HHHHHHhhhHHHHHH
Q 012561 151 EQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSL------AREKETRL-NMERSHASLSEDLGK 223 (461)
Q Consensus 151 ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~------~kEkEaR~-~~E~~~~~LseeL~k 223 (461)
...|.++ -+|+.+++.++..+-.....+ =...|.+||-||-+- .+.+++.. ......+....+|+|
T Consensus 26 k~ec~~F----~~ki~~F~~iv~~~~~~~~~~---A~~VE~eKlkAIG~RN~l~s~~k~R~~~~q~lq~~I~Ek~~eLER 98 (120)
T PF14931_consen 26 KEECKEF----VEKISEFQKIVKGFIEILDEL---AKRVENEKLKAIGARNLLKSEAKQREAQQQQLQALIAEKKMELER 98 (120)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445544 356778888888776555444 345789999998543 33333222 223334455566666
Q ss_pred HHHHHHHHH
Q 012561 224 AQEELQSAN 232 (461)
Q Consensus 224 ~q~E~~~an 232 (461)
++.|..++-
T Consensus 99 l~~E~~sL~ 107 (120)
T PF14931_consen 99 LRSEYESLQ 107 (120)
T ss_pred HHHHHHHHH
Confidence 666665553
No 458
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=26.47 E-value=70 Score=27.28 Aligned_cols=30 Identities=20% Similarity=0.317 Sum_probs=15.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHhHhHH
Q 012561 210 MERSHASLSEDLGKAQEELQSANQRIASIN 239 (461)
Q Consensus 210 ~E~~~~~LseeL~k~q~E~~~anqqi~slq 239 (461)
|..-.+.|..+++.+..+...+..++..++
T Consensus 23 VD~fl~~l~~~~~~l~~e~~~L~~~~~~l~ 52 (131)
T PF05103_consen 23 VDDFLDELAEELERLQRENAELKEEIEELQ 52 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555566666555555555554433
No 459
>PRK02119 hypothetical protein; Provisional
Probab=26.31 E-value=2.2e+02 Score=23.54 Aligned_cols=39 Identities=31% Similarity=0.354 Sum_probs=27.3
Q ss_pred HHhhHHHHHHH---HHchHHHHHHHHHHHHHHHHHHHHHHhH
Q 012561 150 SEQKCAEMELA---LRNKEEELNLIIVELRKSFASLQEKLAK 188 (461)
Q Consensus 150 ~ek~~~e~E~~---lk~k~eEL~~~i~ELr~~~~SLqe~L~k 188 (461)
.+.+..++|.. ...-+++||.++.+-++.++.|+..|..
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~ 48 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRY 48 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444433 3467889999999999988888877654
No 460
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=26.16 E-value=3.4e+02 Score=24.50 Aligned_cols=13 Identities=15% Similarity=0.322 Sum_probs=8.1
Q ss_pred HhHhHHHHHHHHH
Q 012561 234 RIASINDMYKLLQ 246 (461)
Q Consensus 234 qi~slqDmyKRLQ 246 (461)
-...|++|+|||-
T Consensus 86 I~~~L~~inkRLD 98 (102)
T PF01519_consen 86 ILKTLQSINKRLD 98 (102)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3445677777764
No 461
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=26.10 E-value=5.9e+02 Score=25.68 Aligned_cols=7 Identities=14% Similarity=0.335 Sum_probs=2.7
Q ss_pred HHHHHHh
Q 012561 295 QEQLSTY 301 (461)
Q Consensus 295 q~QL~~s 301 (461)
+.++..+
T Consensus 98 ~~~~~~~ 104 (370)
T PRK11578 98 ENQIKEV 104 (370)
T ss_pred HHHHHHH
Confidence 3333333
No 462
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=26.08 E-value=4e+02 Score=24.77 Aligned_cols=22 Identities=14% Similarity=0.241 Sum_probs=15.9
Q ss_pred HhhhhhhhccHHHHHHHHhhhh
Q 012561 253 QHYNTKLQKDIDAAHESIKRGE 274 (461)
Q Consensus 253 QQYNSkLQaDl~~~~e~~~r~e 274 (461)
.+.|+.|+++++.+...++...
T Consensus 18 ~~~~~~l~~~~~~a~~~~~~~~ 39 (135)
T TIGR03495 18 SQRLRNARADLERANRVLKAQQ 39 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888988888877665443
No 463
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=26.04 E-value=5e+02 Score=23.54 Aligned_cols=89 Identities=26% Similarity=0.393 Sum_probs=62.1
Q ss_pred CCChHHhhHhHHHHHHHHHHHHHHHHHhhhhhH--HHHHHH-----HHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHH
Q 012561 105 KFNYKERCENMMDYIKRLRLCIKWFQELEGDYA--FEHERL-----RNALELSEQKCAEMELALRNKEEELNLIIVELRK 177 (461)
Q Consensus 105 KfdyKgr~EqM~dyIKrLr~CIrWfqelE~~y~--~EqekL-----~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~ 177 (461)
.-+.|.-|....+=|..+..=|.-|.+.=+.+. .|.+|| +|.+++..+.+.--..++...|.|.+.-++-|+-
T Consensus 22 t~~Lk~ec~~F~~ki~~F~~iv~~~~~~~~~~A~~VE~eKlkAIG~RN~l~s~~k~R~~~~q~lq~~I~Ek~~eLERl~~ 101 (120)
T PF14931_consen 22 TQELKEECKEFVEKISEFQKIVKGFIEILDELAKRVENEKLKAIGARNLLKSEAKQREAQQQQLQALIAEKKMELERLRS 101 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777777777655544 455665 5788888888888888888888888888887777
Q ss_pred HHHHHHHHHhHHHhhHHHHH
Q 012561 178 SFASLQEKLAKEESDKLAAL 197 (461)
Q Consensus 178 ~~~SLqe~L~keeseKl~a~ 197 (461)
.+.||+ +.|++-.+-|
T Consensus 102 E~~sL~----kve~eQ~~~i 117 (120)
T PF14931_consen 102 EYESLQ----KVEQEQNELI 117 (120)
T ss_pred HHHHHH----HHHHHHHHHH
Confidence 777664 5565555444
No 464
>PRK11677 hypothetical protein; Provisional
Probab=26.02 E-value=3.6e+02 Score=24.97 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhH
Q 012561 136 YAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAK 188 (461)
Q Consensus 136 y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~k 188 (461)
...++.+|+.+||.++....+-..++..--.+.-.....|.++|..|.+-|++
T Consensus 27 ~~~~q~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y~~Ly~HlA~ 79 (134)
T PRK11677 27 KLRQQQALQYELEKNKAELEEYRQELVSHFARSAELLDTMAKDYRQLYQHMAK 79 (134)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34799999999999999999999999999999999999999999999999977
No 465
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=26.01 E-value=5.7e+02 Score=24.24 Aligned_cols=50 Identities=18% Similarity=0.371 Sum_probs=37.0
Q ss_pred HHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH
Q 012561 297 QLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAE 346 (461)
Q Consensus 297 QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE 346 (461)
=+++--.|.++...=-+....|...|+.||..|+..=-.-+.+|..|...
T Consensus 7 ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~ 56 (159)
T PF05384_consen 7 TIDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKR 56 (159)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566777777778888888888888888888777777777777543
No 466
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=25.97 E-value=3.6e+02 Score=26.12 Aligned_cols=32 Identities=19% Similarity=0.390 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 012561 204 KETRLNMERSHASLSEDLGKAQEELQSANQRI 235 (461)
Q Consensus 204 kEaR~~~E~~~~~LseeL~k~q~E~~~anqqi 235 (461)
.+..+.+|...+....||+..+..+..+++++
T Consensus 161 ~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v 192 (262)
T PF14257_consen 161 VEDLLEIERELSRVRSEIEQLEGQLKYLDDRV 192 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555555555555555555555554
No 467
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=25.82 E-value=2.9e+02 Score=24.72 Aligned_cols=61 Identities=5% Similarity=0.093 Sum_probs=35.1
Q ss_pred cccccccccccCcccCCCCCCCCCCCCCCCCcccccHHHHHHHHhhhhhccCCCChHHhhHhHHHHHHHHHHHHHHHH
Q 012561 53 ARIRQAFSVVNGIQDLGLSSNPASNAGSECGTIEFTREDVEALLSEKMRYKNKFNYKERCENMMDYIKRLRLCIKWFQ 130 (461)
Q Consensus 53 gr~r~~~~~vn~~~d~~~~s~~~~~agse~~~ieFtredVeALLnEKmk~k~KfdyKgr~EqM~dyIKrLr~CIrWfq 130 (461)
|+.|--+.+..+. .++++++++..+.|.+++|.+....++.-+- -+-.-++.|+.|.-|.-
T Consensus 61 G~~RL~v~a~C~~----~~~~~~a~~~~d~~~a~L~~~a~~~~~~lr~-------------~i~~~~~ql~~LQ~YIr 121 (125)
T PF03245_consen 61 GNKRLRVKATCPA----VPETTSAGGVGDAARARLDPAAARNYFRLRE-------------RIDRAIRQLNALQDYIR 121 (125)
T ss_pred CCceEEEeccCCC----CCCCCCCCCCCCcccccCCHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHH
Confidence 5555554443321 2333333444456788999998888876552 24445666777766543
No 468
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.60 E-value=3.9e+02 Score=23.97 Aligned_cols=43 Identities=16% Similarity=0.345 Sum_probs=37.5
Q ss_pred HhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH-hHH
Q 012561 310 RQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIK-HKE 352 (461)
Q Consensus 310 kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~-ykE 352 (461)
+....|-.|++..+.||.+.|.+=..|.++-..|...++. |++
T Consensus 25 ~~q~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y~~ 68 (128)
T PF06295_consen 25 QKQAKLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDYQK 68 (128)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446788999999999999999999999999999999887 777
No 469
>PF14282 FlxA: FlxA-like protein
Probab=25.38 E-value=4.5e+02 Score=22.85 Aligned_cols=32 Identities=25% Similarity=0.342 Sum_probs=22.2
Q ss_pred HchHHHHHHHHHHHHHHHHHHHHHHhHHHhhH
Q 012561 162 RNKEEELNLIIVELRKSFASLQEKLAKEESDK 193 (461)
Q Consensus 162 k~k~eEL~~~i~ELr~~~~SLqe~L~keeseK 193 (461)
..++..|.+-|..|..+++.|+....+....+
T Consensus 50 ~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~~~ 81 (106)
T PF14282_consen 50 QQQIQLLQAQIQQLQAQIAQLQSQQAEQQQQK 81 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677777777777777777777766655443
No 470
>PRK14070 exodeoxyribonuclease VII small subunit; Provisional
Probab=25.33 E-value=1.9e+02 Score=24.08 Aligned_cols=45 Identities=27% Similarity=0.350 Sum_probs=39.9
Q ss_pred HHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhh
Q 012561 377 QLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLI 421 (461)
Q Consensus 377 QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~kii 421 (461)
+|..-=++|.-.|++.-++..-|++=..++...+..|.+||.+|.
T Consensus 3 ~LEeIV~~LE~gel~Leesl~lyeeG~~L~k~C~~~L~~aE~kI~ 47 (69)
T PRK14070 3 ELEEIVNRLENEDLPLEESIKLFERGVELYRKCKEILQQNRLKII 47 (69)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555788899999999999999999999999999999999875
No 471
>PHA03011 hypothetical protein; Provisional
Probab=25.19 E-value=4.2e+02 Score=24.34 Aligned_cols=58 Identities=26% Similarity=0.383 Sum_probs=41.6
Q ss_pred hhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH
Q 012561 288 RGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE 352 (461)
Q Consensus 288 rG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE 352 (461)
-|.++++.+||+-.++.-++-...-.-+.+|.. .+.++=.|-|. +++-|.+|+.+.||
T Consensus 56 ~GD~Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k----~~~~iIQdn~d---~I~~LraeIDkLK~ 113 (120)
T PHA03011 56 EGDINAIIEILDELIAQYNELLDEYNLIENEIK----DLEIIIQDNDD---EIHFLRAEIDKLKE 113 (120)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhchH---HHHHHHHHHHHHHH
Confidence 388888999988877776666666666666654 44555555544 46788999999988
No 472
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=24.84 E-value=6.3e+02 Score=24.29 Aligned_cols=61 Identities=11% Similarity=0.070 Sum_probs=41.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHh
Q 012561 127 KWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLA 187 (461)
Q Consensus 127 rWfqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~ 187 (461)
+++.++...-...........+.++....+.+..+.+...+-..++.+.+.......+.+.
T Consensus 75 ~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~ 135 (205)
T PRK06231 75 RFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANYEALQLKSELE 135 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666667777777777777777777777777777777665544443
No 473
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=24.79 E-value=5.7e+02 Score=23.74 Aligned_cols=43 Identities=19% Similarity=0.199 Sum_probs=28.1
Q ss_pred hHHhhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhH
Q 012561 108 YKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKC 154 (461)
Q Consensus 108 yKgr~EqM~dyIKrLr~CIrWfqelE~~y~~EqekL~~~Le~~ek~~ 154 (461)
|-.|+==++-++==|=+||+.+- .++.+.-+++..++...++.
T Consensus 99 raQRN~YIsGf~LfL~l~I~r~~----~li~~l~~~~~~~~~~~kq~ 141 (192)
T PF05529_consen 99 RAQRNMYISGFALFLSLVIRRVH----SLIKELIKLEEKLEALKKQA 141 (192)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 45565556677666777777665 66777777777666665544
No 474
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=24.69 E-value=2.6e+02 Score=26.25 Aligned_cols=48 Identities=25% Similarity=0.342 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhh
Q 012561 340 VQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEV 387 (461)
Q Consensus 340 vqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~ 387 (461)
+.++..++..|.++..++..|.....+-.++|+.+..+|..+...|.-
T Consensus 14 L~~~L~~l~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~ 61 (188)
T PF10018_consen 14 LSSALEELQEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRT 61 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666777778888888888888999999999999887753
No 475
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=24.69 E-value=6.5e+02 Score=24.44 Aligned_cols=89 Identities=17% Similarity=0.228 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHH
Q 012561 240 DMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEV 319 (461)
Q Consensus 240 DmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev 319 (461)
+...-++|-..|||+=.+++++ +.......+..-.+|-..|...+++......-...+..+..|...--+...+=|
T Consensus 78 EAe~vV~ee~~sL~~aq~na~a----A~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rv 153 (188)
T PF05335_consen 78 EAEAVVQEEKASLQQAQANAQA----AQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRV 153 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567778888877666554 444445555555566666666666555555444444444444444444444444
Q ss_pred HHHHHHHhhhhhh
Q 012561 320 ASMRVELQQVRDD 332 (461)
Q Consensus 320 ~~LR~ELqqvRdD 332 (461)
..|..-|+..|.|
T Consensus 154 e~L~~QL~~Ar~D 166 (188)
T PF05335_consen 154 EELQRQLQAARAD 166 (188)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444444
No 476
>PRK14069 exodeoxyribonuclease VII small subunit; Provisional
Probab=24.64 E-value=1.8e+02 Score=25.67 Aligned_cols=46 Identities=33% Similarity=0.325 Sum_probs=40.1
Q ss_pred HHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhh
Q 012561 376 DQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLI 421 (461)
Q Consensus 376 ~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~kii 421 (461)
.+|..-=.+|.--|++..+...-|++=-.++...+.+|.+||.+|.
T Consensus 15 ~~LEeIV~~LEsgdl~LEesl~lyeeGv~L~k~C~~~L~~AE~kV~ 60 (95)
T PRK14069 15 RELEQIAEKLERQDFSLEESLKAYERGMELKKICSGILDDAEGKIE 60 (95)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556788889999999999999999999999999999998863
No 477
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=24.64 E-value=1e+03 Score=26.54 Aligned_cols=108 Identities=19% Similarity=0.278 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHH
Q 012561 174 ELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQ 253 (461)
Q Consensus 174 ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQ 253 (461)
+++.++.-+-+.|.-.+-+|-++ + -|+| .+-+....-.+|-+-|+.+...+++-..+.+..-.|+++-
T Consensus 78 di~~qlr~~rtel~~a~~~k~~~-e---~er~---~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q----- 145 (499)
T COG4372 78 DIRPQLRALRTELGTAQGEKRAA-E---TERE---AARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQ----- 145 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-H---HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 44555555555665555555332 1 1111 1222222223444445555555555555555445555442
Q ss_pred hhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHH
Q 012561 254 HYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQ 295 (461)
Q Consensus 254 QYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq 295 (461)
| -+||+.+-+..+....++-++.++.-.=+.|-|...-|+
T Consensus 146 -~-q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk 185 (499)
T COG4372 146 -A-QDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLK 185 (499)
T ss_pred -H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 356777777777777777777776655555555444443
No 478
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=24.48 E-value=9.5e+02 Score=26.24 Aligned_cols=58 Identities=21% Similarity=0.274 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHhHhHH---HHHHHHHHHHhHHHhhhhhhh-ccHHHHHHHHhhhhh
Q 012561 218 SEDLGKAQEELQSANQRIASIN---DMYKLLQEYNSSLQHYNTKLQ-KDIDAAHESIKRGEK 275 (461)
Q Consensus 218 seeL~k~q~E~~~anqqi~slq---DmyKRLQEYNTSLQQYNSkLQ-aDl~~~~e~~~r~eK 275 (461)
..+|..+..+...+.+++...+ .+-+.|+++++-|+.||.-+. .++-.|.+.+.+++.
T Consensus 75 ~~~l~~a~~e~~~L~~eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~ 136 (593)
T PF06248_consen 75 QPQLRDAAEELQELKRELEENEQLLEVLEQLQEIDELLEEVEEALKEGNYLDAADLLEELKS 136 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3334444444444444444333 334567788888888876554 456666666666553
No 479
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=24.38 E-value=1.1e+03 Score=27.14 Aligned_cols=109 Identities=17% Similarity=0.182 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHH
Q 012561 133 EGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMER 212 (461)
Q Consensus 133 E~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~ 212 (461)
..-+..+..++..-|+..+....+.|. +.+++.....++.+....|++++.+-+.+|-..++...+| |...++.
T Consensus 508 ~~~~~~~~~~~~~li~~l~~~~~~~e~----~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~--a~~~l~~ 581 (782)
T PRK00409 508 KKLIGEDKEKLNELIASLEELERELEQ----KAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKE--AQQAIKE 581 (782)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Q ss_pred HHhhhHHHHHHHHH---------HHHHHHHHhHhHHHHHHHHHH
Q 012561 213 SHASLSEDLGKAQE---------ELQSANQRIASINDMYKLLQE 247 (461)
Q Consensus 213 ~~~~LseeL~k~q~---------E~~~anqqi~slqDmyKRLQE 247 (461)
++....+=+.+++. ......+....++.+.+.+++
T Consensus 582 a~~~~~~~i~~lk~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 625 (782)
T PRK00409 582 AKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEK 625 (782)
T ss_pred HHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhhhhhh
No 480
>PRK00295 hypothetical protein; Provisional
Probab=24.23 E-value=3.4e+02 Score=22.16 Aligned_cols=21 Identities=38% Similarity=0.514 Sum_probs=9.4
Q ss_pred hhHHHHHHhhHHHHHHHHHHH
Q 012561 357 SEDLEARCASQSNQIRSLSDQ 377 (461)
Q Consensus 357 ~~~LEetCssQ~eqI~~Lq~Q 377 (461)
+..||..-+-|...|..|-+.
T Consensus 7 i~~LE~kla~qE~tie~Ln~~ 27 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDV 27 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 481
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=24.05 E-value=1.5e+03 Score=28.35 Aligned_cols=213 Identities=22% Similarity=0.358 Sum_probs=122.7
Q ss_pred CCCChHH--hhHhHHHHHHHH---HHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHH
Q 012561 104 NKFNYKE--RCENMMDYIKRL---RLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKS 178 (461)
Q Consensus 104 ~KfdyKg--r~EqM~dyIKrL---r~CIrWfqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~ 178 (461)
+.|++-+ ..--=||-||.+ |+-+.-+-+ -....|+-.+-++|++.+.=-.|.|. ..=--+|..-|..+++.
T Consensus 1003 SaFNs~EA~~AK~QMDaIKqmIekKv~L~~L~q--CqdALeKqnIa~AL~ALn~IPSdKEm--s~Is~eLReQIq~~KQ~ 1078 (1439)
T PF12252_consen 1003 SAFNSEEARQAKAQMDAIKQMIEKKVVLQALTQ--CQDALEKQNIAGALQALNNIPSDKEM--SKISSELREQIQSVKQD 1078 (1439)
T ss_pred hhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhHHHHHHHHhcCCchhhh--hhhhHHHHHHHHHHHHH
Confidence 4455533 233347889887 344442222 22456777888888888766555443 22334566666666666
Q ss_pred HHHHHHHHhH-----HHhhHHHHHHhhHHH---------HHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHhH-------
Q 012561 179 FASLQEKLAK-----EESDKLAALDSLARE---------KETRLNMERSHASLSEDLGKAQEELQSA-NQRIA------- 236 (461)
Q Consensus 179 ~~SLqe~L~k-----eeseKl~a~~s~~kE---------kEaR~~~E~~~~~LseeL~k~q~E~~~a-nqqi~------- 236 (461)
++|||-.+.- ++..| .-.+.+-.+ +............ -..|+.+|+|++-+ |.++.
T Consensus 1079 LesLQRAV~TPVvtd~eKvr-~rYe~LI~~iTKrIt~LEk~k~~~l~~ikK~-ia~lnnlqqElklLRnEK~Rmh~~~dk 1156 (1439)
T PF12252_consen 1079 LESLQRAVVTPVVTDAEKVR-VRYETLITDITKRITDLEKAKLDNLDSIKKA-IANLNNLQQELKLLRNEKIRMHSGTDK 1156 (1439)
T ss_pred HHHHHHhhcccccccHHHHH-HHHHHHHHHHHHHHHHHhccccccHHHHHHH-HHHHHHHHHHHHHHHhHHHhhccCCCc
Confidence 7777632210 00000 000111111 1111111111111 12455555555544 33333
Q ss_pred ----hHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhh
Q 012561 237 ----SINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQK 312 (461)
Q Consensus 237 ----slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK 312 (461)
.++.+-+|||+--+-| |+. -+......|+-|++|| =.|++.++-..+++.++|+.-.---+|.||++
T Consensus 1157 VDFSDIEkLE~qLq~~~~kL--~dA----yl~eitKqIsaLe~e~---PKnltdvK~missf~d~laeiE~LrnErIKkH 1227 (1439)
T PF12252_consen 1157 VDFSDIEKLEKQLQVIHTKL--YDA----YLVEITKQISALEKEK---PKNLTDVKSMISSFNDRLAEIEFLRNERIKKH 1227 (1439)
T ss_pred ccHHHHHHHHHHHHHhhhhh--HHH----HHHHHHHHHHHHHhhC---CCchhhHHHHHHHHHhhhhHHHHHHHHHhhcc
Confidence 3567778888876655 322 2344455777777554 46899999999999999999999999999998
Q ss_pred HHH-----HHHHHHHHHHHhhhhh
Q 012561 313 DAL-----VHEVASMRVELQQVRD 331 (461)
Q Consensus 313 ~~L-----~~Ev~~LR~ELqqvRd 331 (461)
.+- ...|..|.+.||.+-+
T Consensus 1228 GaSkePLDlSDlDkLk~~LQ~iNQ 1251 (1439)
T PF12252_consen 1228 GASKEPLDLSDLDKLKGQLQKINQ 1251 (1439)
T ss_pred CCCCCccchhhHHHHHHHHHHHHH
Confidence 632 2788999999998864
No 482
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=24.01 E-value=5.1e+02 Score=22.92 Aligned_cols=94 Identities=11% Similarity=0.144 Sum_probs=60.5
Q ss_pred hhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH---HHHHHhHHhhhhhhHHHHHHhhHH
Q 012561 292 ISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALT---AEVIKHKELAVSSEDLEARCASQS 368 (461)
Q Consensus 292 ~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~---aE~~~ykEl~~k~~~LEetCssQ~ 368 (461)
.+|+.=|+.....-+.|...--.+..++......|.+..+.|+....+...-. -.+..|.-...=...|.+....|.
T Consensus 5 frL~~vL~l~~~~ee~a~~~L~~a~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~g~~~~~l~~~~~fl~~L~~~i~~q~ 84 (146)
T PRK07720 5 FRLQKVLELKENEKEKALGEYEEAVSRFEQVAEKLYELLKQKEDLEQAKEEKLQSGLSIQEIRHYQQFVTNLERTIDHYQ 84 (146)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666777777777777777777777777777776666544422 112222223334556777888888
Q ss_pred HHHHHHHHHHHHHHhhh
Q 012561 369 NQIRSLSDQLAAAEEKL 385 (461)
Q Consensus 369 eqI~~Lq~QLa~A~eKL 385 (461)
..+..++..+..+...+
T Consensus 85 ~~v~~~~~~ve~~r~~~ 101 (146)
T PRK07720 85 LLVMQAREQMNRKQQDL 101 (146)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888877776665
No 483
>PRK04098 sec-independent translocase; Provisional
Probab=23.98 E-value=3.3e+02 Score=26.06 Aligned_cols=52 Identities=15% Similarity=0.237 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhHHHhhhhhhhc--cHHHHHHHHhhhhhHHHHHHHhhhhhhh
Q 012561 238 INDMYKLLQEYNSSLQHYNTKLQK--DIDAAHESIKRGEKEKSAIVENLSTLRG 289 (461)
Q Consensus 238 lqDmyKRLQEYNTSLQQYNSkLQa--Dl~~~~e~~~r~eKEK~tivEnls~LrG 289 (461)
+.|+-+-++.|-.+|++-+..|++ +++...+..+-.+.++..+...++.++.
T Consensus 56 ~~elk~e~~k~k~~l~~~~~~l~~~~~~eel~~~~~~~~~~~~~~~~~~~~~~~ 109 (158)
T PRK04098 56 IEEIKEEALKYKKEFESAVESLKKKLKFEELDDLKITAENEIKSIQDLLQDYKK 109 (158)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhhhhcchhHHHHHhhhhh
Confidence 567777788898999999999998 5556666666666666666666555554
No 484
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=23.89 E-value=2.1e+02 Score=24.13 Aligned_cols=46 Identities=24% Similarity=0.247 Sum_probs=40.3
Q ss_pred HHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhh
Q 012561 376 DQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLI 421 (461)
Q Consensus 376 ~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~kii 421 (461)
.+|..-=++|.--|++.-+...-|+.=..++...+.+|.+||.+|.
T Consensus 13 ~~Le~IV~~LE~gdl~Leesl~lyeeG~~L~k~C~~~L~~ae~kv~ 58 (76)
T PRK14068 13 QELEQIVQKLDNETVSLEESLDLYQRGMKLSAACDTTLKNAEKKVN 58 (76)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555788899999999999999999999999999999999874
No 485
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=23.69 E-value=1.7e+02 Score=24.49 Aligned_cols=29 Identities=17% Similarity=0.301 Sum_probs=21.6
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHHhh
Q 012561 356 SSEDLEARCASQSNQIRSLSDQLAAAEEK 384 (461)
Q Consensus 356 k~~~LEetCssQ~eqI~~Lq~QLa~A~eK 384 (461)
..-.++.++..|..+|+.|++++..=++-
T Consensus 46 ~lpgi~~s~eeq~~~i~~Le~~i~~k~~~ 74 (83)
T PF07544_consen 46 ELPGIDRSVEEQEEEIEELEEQIRKKREV 74 (83)
T ss_pred hCCCccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33447788889999999999988764443
No 486
>PF01806 Paramyxo_P: Paramyxovirinae P phosphoprotein C-terminal region; InterPro: IPR002693 Sendai virus is a member of the Paramyxovirinae family. Its negative-sense ssRNA genome is packaged by the viral nucleoprotein (N) within a helical nucleocapsid. Paramyxovirinae use this N-RNA (nucleoprotein-RNA) complex as a template for both transcription and replication. During viral genome replication, the synthesis of viral RNA and its encapsidation by N are concomitant. Viral transcription and replication are carried out by viral RNA-dependent RNA polymerase, which consists of two proteins: L polymerase and phosphoprotein P. The L polymerase carries the enzyme activity. Phosphoprotein P binds the viral nucleocapsid, and positions the L polymerase on the template for transcription and replication formed by nucleoprotein-RNA (N-RNA) []. This entry represents phosphoprotein P from Sendai virus as well as from close family members. Phosphoprotein P, an indispensable subunit of the viral polymerase complex, is a modular protein organised into two moieties that are both functionally and structurally distinct: a well-conserved C-terminal moiety that contains all the regions required for transcription, and a poorly conserved, intrinsically unstructured N-terminal moiety that provides several additional functions required for replication. The N-terminal moiety is responsible for binding to newly synthesized free N(0) (nucleoprotein that has not yet bound RNA), in order to prevent the binding of N(0) to cellular RNA. The C-terminal moiety consists of an oligomerisation domain, an N-RNA (nucleoprotein-RNA)-binding domain and an L polymerase-binding domain [, ]. ; GO: 0003723 RNA binding, 0003968 RNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent, 0019079 viral genome replication; PDB: 1R4G_A 1EZJ_A.
Probab=23.69 E-value=1.2e+02 Score=30.55 Aligned_cols=38 Identities=16% Similarity=0.358 Sum_probs=31.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 012561 208 LNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEY 248 (461)
Q Consensus 208 ~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEY 248 (461)
++++.+++. -|+..|.++.....-+.+..|.||||-||
T Consensus 58 i~v~~~~~n---k~~q~q~~l~~ik~~~~~~~e~hrR~~E~ 95 (248)
T PF01806_consen 58 ISVSMDHDN---KLNQIQQELKQIKEDLKKMDESHRRFIEN 95 (248)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555543 46677899999999999999999999998
No 487
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=23.57 E-value=9.4e+02 Score=26.16 Aligned_cols=105 Identities=21% Similarity=0.346 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHhHhh------------------HHHHHHhhHHHHHHHHHHHHH------------H
Q 012561 277 KSAIVENLSTLRGQYISLQEQLSTYKAS------------------QDEAMRQKDALVHEVASMRVE------------L 326 (461)
Q Consensus 277 K~tivEnls~LrG~~~SLq~QL~~skaS------------------q~Ea~kQK~~L~~Ev~~LR~E------------L 326 (461)
+..|-++|+++|....+++. .+..++ -+..+..-++|-.=|+.||.+ |
T Consensus 171 ~~~~~~~i~~i~~ki~~~k~--~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~ql 248 (424)
T PF03915_consen 171 QSEVKESISSIREKIKKVKS--ASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQL 248 (424)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--hhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHH
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhHHhhhhh--hHHHHHH------hhHHHHHHHHHHHHHHHHh
Q 012561 327 QQVRDDRDHQLSQVQALTAEVIKHKELAVSS--EDLEARC------ASQSNQIRSLSDQLAAAEE 383 (461)
Q Consensus 327 qqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~--~~LEetC------ssQ~eqI~~Lq~QLa~A~e 383 (461)
..|..|-++.-..+..+..-+...|-...|+ .+|+--| ..|.+.|.-|++.|..+.+
T Consensus 249 e~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eEQqfL~~QedL~~DL~eDl~k~~e 313 (424)
T PF03915_consen 249 ETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVCEEQQFLKLQEDLLSDLKEDLKKASE 313 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=23.12 E-value=6e+02 Score=23.47 Aligned_cols=46 Identities=20% Similarity=0.341 Sum_probs=30.5
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 012561 191 SDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYN 249 (461)
Q Consensus 191 seKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYN 249 (461)
.+|.+++-.+-+.. ..+.+-...|++++..+.++.+.-.+||.+|=
T Consensus 39 ~~K~~~~~~~Ik~~-------------ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL 84 (162)
T PF05565_consen 39 EEKADNIAKVIKNL-------------EADIEAIKAEIKRLQERKKSIENRIDRLKEYL 84 (162)
T ss_pred HHHHHHHHHHHHHh-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555544 44556667777777777777777777888773
No 489
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=23.11 E-value=6.9e+02 Score=24.13 Aligned_cols=56 Identities=18% Similarity=0.300 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhh
Q 012561 219 EDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGE 274 (461)
Q Consensus 219 eeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~e 274 (461)
.++.+...++..+.++|..+++.-.-+-+=+..-.-=.+.|++++....+.+..++
T Consensus 124 ~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 124 AELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAE 179 (190)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555554443222222222222334455555555555554444
No 490
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=23.04 E-value=5.2e+02 Score=22.71 Aligned_cols=72 Identities=24% Similarity=0.335 Sum_probs=33.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHhHh---------HHHHHHHHHHHHhHHHhhhhhhhccHHHHH-HHHhhhhhHHHHHH
Q 012561 212 RSHASLSEDLGKAQEELQSANQRIAS---------INDMYKLLQEYNSSLQHYNTKLQKDIDAAH-ESIKRGEKEKSAIV 281 (461)
Q Consensus 212 ~~~~~LseeL~k~q~E~~~anqqi~s---------lqDmyKRLQEYNTSLQQYNSkLQaDl~~~~-e~~~r~eKEK~tiv 281 (461)
........+|+..+.+++...+++.+ .+...+.+|.-...||+|-..++.++.... +.+..+.+.=..++
T Consensus 43 ~~~~~~~~~l~~~~~el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~i~~~i~~~v 122 (158)
T PF03938_consen 43 EKFKALQKELQAKQKELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQQFQQQAQQQLQQEEQELLQPIQKKINKAV 122 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444443333 234444555555566666666666554433 23333333333333
Q ss_pred Hh
Q 012561 282 EN 283 (461)
Q Consensus 282 En 283 (461)
+.
T Consensus 123 ~~ 124 (158)
T PF03938_consen 123 EE 124 (158)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 491
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=22.97 E-value=2.7e+02 Score=27.93 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=25.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 012561 212 RSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEY 248 (461)
Q Consensus 212 ~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEY 248 (461)
.....+..=++.+..++..+......+...|+++-+|
T Consensus 309 ~f~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~y 345 (370)
T PF02181_consen 309 KFKEKMKEFLEEAETKLDELQELYEELEEAFKQLLQY 345 (370)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777777777777777777777777666
No 492
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=22.96 E-value=3.2e+02 Score=24.56 Aligned_cols=54 Identities=24% Similarity=0.335 Sum_probs=41.6
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhh
Q 012561 276 EKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQV 329 (461)
Q Consensus 276 EK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqv 329 (461)
.|..|...++.|-.+...|..++...|.-..+.+..-..|.-|-.-||.-|.++
T Consensus 2 dk~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 2 DKKEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367788888888888888888888888877777777777777777777666654
No 493
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=22.93 E-value=1.1e+03 Score=26.52 Aligned_cols=83 Identities=17% Similarity=0.199 Sum_probs=44.6
Q ss_pred HHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 012561 155 AEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQR 234 (461)
Q Consensus 155 ~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqq 234 (461)
.++..++..+...|+.-+.+++.+..+||+.+..-.... -+-.--|-|--+..-.-+-.|..|..-+..=+++|.++
T Consensus 377 ~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~~r---~dW~laEae~Ll~lA~q~L~l~~dv~~A~~~L~~AD~~ 453 (656)
T PRK06975 377 QASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDLSRNR---DDWMIAEVEQMLSSASQQLQLTGNVQLALIALQNADAR 453 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh---hhhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344555666666677777777777777777664322111 11122244444444444455555666666666666666
Q ss_pred hHhHHH
Q 012561 235 IASIND 240 (461)
Q Consensus 235 i~slqD 240 (461)
+..++|
T Consensus 454 La~~~~ 459 (656)
T PRK06975 454 LATSDS 459 (656)
T ss_pred HHhcCC
Confidence 655443
No 494
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=22.83 E-value=5.4e+02 Score=22.77 Aligned_cols=79 Identities=19% Similarity=0.335 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q 012561 165 EEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKL 244 (461)
Q Consensus 165 ~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKR 244 (461)
.++.......+...++.++-.+.|-.. .+++- +..+...+.....+..+++.++.++..+..++...+.+++.
T Consensus 41 ~e~~~~~~e~~l~~l~~~e~~~~k~q~----~~~~n---~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~ 113 (139)
T PF05615_consen 41 SEESQFLYERLLKELAQFEFSILKSQL----ILEMN---KRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQN 113 (139)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666655432 12222 22344556666777778888888888888888888888888
Q ss_pred HHHHHh
Q 012561 245 LQEYNS 250 (461)
Q Consensus 245 LQEYNT 250 (461)
=+||+.
T Consensus 114 k~eyd~ 119 (139)
T PF05615_consen 114 KEEYDA 119 (139)
T ss_pred HHHHHH
Confidence 888874
No 495
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=22.83 E-value=4.4e+02 Score=21.81 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q 012561 217 LSEDLGKAQEELQSANQRIASINDMYKLL 245 (461)
Q Consensus 217 LseeL~k~q~E~~~anqqi~slqDmyKRL 245 (461)
...+|-....++...-.++..++++|..|
T Consensus 82 ~~~~l~~~~~~l~~~~~~~~~~n~~N~~l 110 (143)
T PF05130_consen 82 EREELQALWRELRELLEELQELNERNQQL 110 (143)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555544
No 496
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=22.79 E-value=7.3e+02 Score=24.31 Aligned_cols=32 Identities=13% Similarity=0.176 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 012561 216 SLSEDLGKAQEELQSANQRIASINDMYKLLQE 247 (461)
Q Consensus 216 ~LseeL~k~q~E~~~anqqi~slqDmyKRLQE 247 (461)
.+..+|..++..+..+..++...+.-|.|.+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~ 125 (327)
T TIGR02971 94 KLFKDVAAQQATLNRLEAELETAQREVDRYRS 125 (327)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555543
No 497
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=22.78 E-value=1.8e+02 Score=26.96 Aligned_cols=57 Identities=19% Similarity=0.308 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhh
Q 012561 316 VHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEK 384 (461)
Q Consensus 316 ~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eK 384 (461)
..+...||.|+++++.+...-.+ ..|.++|--|.-|.+.|++ +++.+.+++...+.+
T Consensus 39 ~~~~~~l~~Ei~~l~~E~~~iS~-----qDeFAkwaKl~Rk~~kl~~-------el~~~~~~~~~~~~~ 95 (161)
T PF04420_consen 39 SKEQRQLRKEILQLKRELNAISA-----QDEFAKWAKLNRKLDKLEE-------ELEKLNKSLSSEKSS 95 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS-T-----TTSHHHHHHHHHHHHHHHH-------HHHHHHHHHHHTCHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCc-----HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 34445555555555554443322 2366666665555555554 455555555544443
No 498
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=22.76 E-value=9.4e+02 Score=25.60 Aligned_cols=115 Identities=22% Similarity=0.287 Sum_probs=63.0
Q ss_pred HHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHH---HHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHH
Q 012561 297 QLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLS---QVQALTAEVIKHKELAVSSEDLEARCASQSNQIRS 373 (461)
Q Consensus 297 QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~---QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~ 373 (461)
.+...+....||.|-| +.|+.-=+.=|+|+|.-|--.-. -+..+.. ..+.=|..|..+||+ +|..
T Consensus 126 ~~lk~RI~rSEAFKRK---llE~kYD~~mL~qLr~g~~~~~~~~~~~~~~~~--D~v~LLqkk~~~l~~-------~l~~ 193 (323)
T PF08537_consen 126 RLLKDRILRSEAFKRK---LLEKKYDKRMLEQLRRGRSKNRHNRPRNPSSNS--DRVILLQKKIDELEE-------RLND 193 (323)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHhcCCCCCCcccccCCCcch--hHHHHHHHHHHHHHH-------HHHH
Confidence 4667777888888877 66766556666776643211110 0001100 111224445555554 5566
Q ss_pred HHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhhhhHHhHHhhhhhhhhhcccc
Q 012561 374 LSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILELEVNL 441 (461)
Q Consensus 374 Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~kiiEGEkLRKKLHNTILELKGNI 441 (461)
++.+|...+.+|+.| +....=||+.|.||. |+++-+..+=+=+=|+ ++|+
T Consensus 194 ~~~eL~~~~k~L~fa--------------qekn~LlqslLddan---iD~~y~ksRR~i~Nl~-~~n~ 243 (323)
T PF08537_consen 194 LEKELEITKKDLKFA--------------QEKNALLQSLLDDAN---IDSEYVKSRRDIKNLQ-KENL 243 (323)
T ss_pred HHHHHHHHHHHHHHH--------------HHHHHHHHHHHhhhc---ccHHHHHhhhhccccc-ccCC
Confidence 666666666666544 344566899999986 5666554444444344 6663
No 499
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=22.75 E-value=2.2e+02 Score=23.81 Aligned_cols=45 Identities=27% Similarity=0.301 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhh
Q 012561 376 DQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKL 420 (461)
Q Consensus 376 ~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~ki 420 (461)
.+|..-=++|.--|++.-+...-|++=-.++...+.+|.+||.+|
T Consensus 11 ~~LE~IV~~LE~g~l~Leesl~lyeeG~~L~k~C~~~L~~ae~kv 55 (75)
T PRK14066 11 KKLEEVVKKLEGGELSLDDSLKAFEEGVKHAAFCSKKLDEAERRV 55 (75)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PRK08871 flgK flagellar hook-associated protein FlgK; Validated
Probab=22.70 E-value=6.4e+02 Score=28.47 Aligned_cols=102 Identities=9% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHH
Q 012561 241 MYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVA 320 (461)
Q Consensus 241 myKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~ 320 (461)
+...|+.|=.+||.+.++= +|...-...+.+.+-==..+-..-..|.+.-..+..|+..+-..-+.-++|--+|..++.
T Consensus 108 ls~~L~~Ff~alq~la~~P-~~~aaRq~vl~~A~~La~~fn~~~~~L~~~~~~vn~qi~~~V~~IN~l~~qIA~LN~qI~ 186 (626)
T PRK08871 108 IPENLNEWFDAVKTLADSP-NDLGARKVVLEKAKLISQTLNDFHETVRQQKDVTNKKLDLGVERINQIALEIRDIHRLMM 186 (626)
T ss_pred HHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHH
Q 012561 321 SMRVELQQVRDDRDHQLSQVQAL 343 (461)
Q Consensus 321 ~LR~ELqqvRdDRDr~~~QvqsL 343 (461)
...+.=-..+|.||+.+.++..+
T Consensus 187 ~~~g~pNdLlDqRD~ll~eLS~~ 209 (626)
T PRK08871 187 RTPGPHNDLMDQHEKLVKELSQY 209 (626)
T ss_pred hcCCCchhhHHHHHHHHHHHHhh
Done!