Query 012561
Match_columns 461
No_of_seqs 34 out of 36
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 11:50:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012561.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012561hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4etp_A Kinesin-like protein KA 99.3 6.2E-12 2.1E-16 125.7 8.2 54 400-453 20-73 (403)
2 1c1g_A Tropomyosin; contractIl 99.1 2.3E-06 7.8E-11 73.6 34.5 11 141-151 23-33 (284)
3 3u06_A Protein claret segregat 99.1 6.3E-11 2.2E-15 119.2 6.8 68 372-453 6-73 (412)
4 1c1g_A Tropomyosin; contractIl 99.1 4.9E-06 1.7E-10 71.6 36.3 20 218-237 75-94 (284)
5 1i84_S Smooth muscle myosin he 98.7 5.9E-08 2E-12 107.3 13.1 133 163-295 864-996 (1184)
6 1i84_S Smooth muscle myosin he 98.7 7E-08 2.4E-12 106.7 11.4 42 402-443 1121-1162(1184)
7 3o0z_A RHO-associated protein 97.0 0.016 5.5E-07 53.3 14.6 70 310-379 62-153 (168)
8 2v71_A Nuclear distribution pr 97.0 0.059 2E-06 50.2 18.3 116 126-265 12-127 (189)
9 3oja_B Anopheles plasmodium-re 96.9 0.0055 1.9E-07 61.4 11.1 144 233-386 428-575 (597)
10 3na7_A HP0958; flagellar bioge 96.8 0.07 2.4E-06 49.9 17.4 81 258-341 94-174 (256)
11 3vkg_A Dynein heavy chain, cyt 96.5 1.7 5.8E-05 54.1 30.8 212 107-352 1859-2091(3245)
12 3na7_A HP0958; flagellar bioge 96.5 0.34 1.2E-05 45.3 19.9 176 269-447 19-206 (256)
13 2dfs_A Myosin-5A; myosin-V, in 96.4 0.13 4.3E-06 57.7 19.0 33 159-191 924-956 (1080)
14 2fxo_A Myosin heavy chain, car 95.4 0.27 9.1E-06 42.3 12.6 79 359-441 38-120 (129)
15 2heh_A KIF2C protein; kinesin, 95.0 0.0032 1.1E-07 63.4 -0.6 27 425-452 38-64 (387)
16 4gkw_A Spindle assembly abnorm 95.0 2 6.9E-05 39.0 20.6 107 216-333 57-163 (167)
17 3tnu_B Keratin, type II cytosk 94.8 0.22 7.5E-06 42.7 10.3 71 280-353 48-125 (129)
18 4etp_B Spindle POLE BODY-assoc 94.8 0.043 1.5E-06 55.1 6.6 24 427-450 47-70 (333)
19 3oja_B Anopheles plasmodium-re 94.7 0.17 5.9E-06 50.6 10.8 35 397-441 551-585 (597)
20 2dfs_A Myosin-5A; myosin-V, in 94.6 0.6 2E-05 52.4 15.8 20 268-287 1023-1042(1080)
21 1gk4_A Vimentin; intermediate 94.2 0.24 8.1E-06 40.1 8.6 67 284-353 3-76 (84)
22 1v8k_A Kinesin-like protein KI 94.2 0.0089 3.1E-07 60.6 0.2 26 426-452 59-84 (410)
23 2owm_A Nckin3-434, related to 93.8 0.012 4.2E-07 59.9 0.4 20 433-452 32-51 (443)
24 3o0z_A RHO-associated protein 93.8 4.1 0.00014 37.5 18.3 88 160-247 38-125 (168)
25 3tnu_A Keratin, type I cytoske 93.8 0.35 1.2E-05 41.6 9.3 68 283-353 53-127 (131)
26 3ol1_A Vimentin; structural ge 93.6 0.76 2.6E-05 39.3 11.0 84 262-352 21-104 (119)
27 3vkg_A Dynein heavy chain, cyt 93.5 16 0.00055 45.9 26.0 47 294-340 2061-2107(3245)
28 1x8y_A Lamin A/C; structural p 93.4 0.29 9.8E-06 39.9 7.8 66 284-352 5-77 (86)
29 2efr_A General control protein 93.2 4.7 0.00016 36.5 17.3 130 293-439 4-137 (155)
30 2eqb_B RAB guanine nucleotide 93.2 1.9 6.6E-05 36.7 12.6 64 171-234 6-70 (97)
31 1d7m_A Cortexillin I; coiled-c 92.4 2.7 9.3E-05 35.9 12.4 85 290-379 5-91 (101)
32 3mov_A Lamin-B1; LMNB1, B-type 91.7 0.66 2.3E-05 38.7 8.0 68 283-353 13-87 (95)
33 2efr_A General control protein 90.9 5.4 0.00019 36.1 13.6 106 324-439 7-112 (155)
34 2efl_A Formin-binding protein 89.1 13 0.00045 33.8 21.4 132 142-277 80-228 (305)
35 2v66_B Nuclear distribution pr 88.5 11 0.00037 32.7 13.0 98 285-386 6-107 (111)
36 2ocy_A RAB guanine nucleotide 88.1 15 0.00051 33.3 16.9 128 214-383 15-143 (154)
37 3tnu_B Keratin, type II cytosk 87.2 9.1 0.00031 32.6 11.8 85 170-266 36-120 (129)
38 2fxo_A Myosin heavy chain, car 87.1 13 0.00046 31.7 15.2 80 210-289 39-118 (129)
39 3ol1_A Vimentin; structural ge 86.9 11 0.00037 32.1 12.0 84 132-240 14-97 (119)
40 3ghg_A Fibrinogen alpha chain; 85.6 22 0.00074 38.1 15.8 117 168-301 62-188 (562)
41 3u1c_A Tropomyosin alpha-1 cha 84.6 16 0.00055 30.3 12.8 90 214-331 11-100 (101)
42 3swk_A Vimentin; cytoskeleton, 83.9 7.8 0.00027 31.6 9.3 76 269-351 8-83 (86)
43 3tnu_A Keratin, type I cytoske 83.4 10 0.00034 32.5 10.3 85 170-266 38-122 (131)
44 3oja_A Leucine-rich immune mol 83.3 14 0.00047 36.4 12.6 51 261-318 435-485 (487)
45 2e7s_A RAB guanine nucleotide 83.2 8.3 0.00028 34.5 9.9 63 162-228 21-83 (135)
46 3ghg_A Fibrinogen alpha chain; 82.4 8.9 0.00031 40.9 11.4 94 240-334 61-155 (562)
47 3mxz_A Tubulin-specific chaper 81.2 16 0.00055 31.5 10.7 86 182-275 16-109 (116)
48 2no2_A HIP-I, huntingtin-inter 80.8 25 0.00086 29.8 11.9 55 292-349 11-65 (107)
49 1hci_A Alpha-actinin 2; triple 80.3 44 0.0015 32.3 25.6 43 395-437 337-379 (476)
50 2i1j_A Moesin; FERM, coiled-co 78.6 2.8 9.5E-05 43.9 6.1 80 199-278 322-401 (575)
51 3swk_A Vimentin; cytoskeleton, 78.4 24 0.00082 28.7 10.4 42 199-240 36-77 (86)
52 2ocy_A RAB guanine nucleotide 78.1 40 0.0014 30.6 17.3 54 175-228 42-95 (154)
53 1qsd_A Protein (beta-tubulin b 78.1 23 0.00079 30.0 10.6 85 181-273 11-99 (106)
54 2v71_A Nuclear distribution pr 77.9 45 0.0015 31.1 19.1 133 230-379 18-154 (189)
55 2e7s_A RAB guanine nucleotide 77.2 15 0.0005 32.9 9.5 80 215-326 4-83 (135)
56 4gkw_A Spindle assembly abnorm 76.4 45 0.0016 30.3 18.6 92 317-415 60-158 (167)
57 4h1g_A Maltose binding protein 76.3 1.7 5.8E-05 45.8 3.8 32 417-448 348-383 (715)
58 2a01_A Apolipoprotein A-I; fou 76.2 35 0.0012 31.7 12.3 35 242-276 27-63 (243)
59 3u1c_A Tropomyosin alpha-1 cha 75.9 33 0.0011 28.4 12.8 30 372-401 61-90 (101)
60 1l8d_A DNA double-strand break 73.4 28 0.00095 28.2 9.6 39 313-351 6-44 (112)
61 3u59_A Tropomyosin beta chain; 72.9 38 0.0013 27.8 12.8 90 214-331 11-100 (101)
62 3hhm_B NISH2 P85alpha; PI3KCA, 72.0 73 0.0025 31.9 14.1 65 274-342 197-265 (373)
63 2y3a_B Phosphatidylinositol 3- 72.0 28 0.00096 34.0 10.9 110 215-337 35-152 (302)
64 2v4h_A NF-kappa-B essential mo 71.9 34 0.0012 29.8 10.1 51 291-352 26-76 (110)
65 3s4r_A Vimentin; alpha-helix, 71.6 34 0.0012 28.2 9.7 79 237-352 10-91 (93)
66 2xs1_A Programmed cell death 6 71.6 1.1E+02 0.0038 32.5 19.2 95 343-448 606-704 (704)
67 3u59_A Tropomyosin beta chain; 70.8 43 0.0015 27.5 12.7 85 326-413 11-95 (101)
68 1nfn_A Apolipoprotein E3; lipi 70.7 41 0.0014 30.5 11.1 109 239-352 27-142 (191)
69 3ter_A Mammalian stromal inter 70.1 18 0.0006 32.5 8.2 83 218-301 5-98 (136)
70 1x79_B RAB GTPase binding effe 70.0 54 0.0019 28.4 11.8 91 139-253 14-104 (112)
71 2jee_A YIIU; FTSZ, septum, coi 69.9 28 0.00097 28.7 8.8 72 219-290 6-77 (81)
72 3hnw_A Uncharacterized protein 69.9 29 0.001 30.4 9.5 66 200-265 70-135 (138)
73 3s4r_A Vimentin; alpha-helix, 69.2 44 0.0015 27.5 9.9 28 136-163 54-81 (93)
74 1ic2_A Tropomyosin alpha chain 67.5 43 0.0015 26.5 9.3 64 283-346 7-70 (81)
75 3i00_A HIP-I, huntingtin-inter 67.4 20 0.00067 31.1 7.8 59 262-330 23-81 (120)
76 1h7c_A Tubulin-specific chaper 66.3 39 0.0013 28.6 9.3 70 180-257 13-83 (108)
77 3l4q_C Phosphatidylinositol 3- 65.7 83 0.0028 28.9 13.0 62 275-340 89-154 (170)
78 1joc_A EEA1, early endosomal a 65.4 18 0.00062 30.9 7.1 52 273-324 2-53 (125)
79 3mq9_A Bone marrow stromal ant 65.3 86 0.0029 30.7 12.8 28 359-386 433-460 (471)
80 1gk6_A Vimentin; intermediate 65.3 12 0.00042 28.4 5.4 38 315-352 5-49 (59)
81 1wt6_A Myotonin-protein kinase 65.1 16 0.00056 30.3 6.5 56 275-337 24-79 (81)
82 3vmx_A Voltage-gated hydrogen 62.8 11 0.00036 28.7 4.5 32 347-378 6-41 (48)
83 3r2p_A Apolipoprotein A-I; amp 62.6 42 0.0014 29.8 9.3 73 280-352 47-125 (185)
84 3haj_A Human pacsin2 F-BAR; pa 62.0 1.4E+02 0.0046 30.1 23.5 60 218-281 184-244 (486)
85 3onj_A T-snare VTI1; helix, HA 61.8 15 0.00051 30.2 5.7 22 313-334 75-97 (97)
86 3gpv_A Transcriptional regulat 60.8 39 0.0013 29.1 8.5 80 83-191 51-130 (148)
87 3plt_A Sphingolipid long chain 60.1 1.2E+02 0.0041 29.2 12.4 85 283-392 70-154 (234)
88 4h22_A Leucine-rich repeat fli 59.8 42 0.0014 28.9 8.3 79 348-426 9-87 (103)
89 2xv5_A Lamin-A/C; structural p 58.6 21 0.00073 28.6 6.0 40 313-352 8-54 (74)
90 1m1j_C Fibrinogen gamma chain; 57.4 35 0.0012 34.8 8.8 73 306-381 44-117 (409)
91 3q8t_A Beclin-1; autophagy, AT 56.6 83 0.0029 26.0 11.2 47 306-352 28-74 (96)
92 1x8y_A Lamin A/C; structural p 56.6 32 0.0011 27.8 6.8 47 138-184 3-49 (86)
93 3hnw_A Uncharacterized protein 55.5 1.1E+02 0.0036 26.9 12.8 98 90-192 31-132 (138)
94 2xdj_A Uncharacterized protein 54.9 54 0.0019 26.8 7.9 41 290-330 7-47 (83)
95 1ic2_A Tropomyosin alpha chain 54.6 78 0.0027 25.0 8.7 58 216-273 10-67 (81)
96 1wt6_A Myotonin-protein kinase 53.7 51 0.0017 27.4 7.5 51 302-352 16-66 (81)
97 2v4h_A NF-kappa-B essential mo 53.0 1.1E+02 0.0039 26.5 11.3 52 277-328 57-108 (110)
98 3trt_A Vimentin; cytoskeleton, 52.1 35 0.0012 26.3 6.1 18 170-187 56-73 (77)
99 3a7p_A Autophagy protein 16; c 51.1 1.4E+02 0.0049 27.1 11.4 67 137-203 67-136 (152)
100 1m1j_B Fibrinogen beta chain; 50.5 1.5E+02 0.005 31.0 12.1 20 310-329 93-112 (464)
101 4dk0_A Putative MACA; alpha-ha 50.2 67 0.0023 30.0 8.8 22 369-390 136-157 (369)
102 2eqb_B RAB guanine nucleotide 50.1 1.2E+02 0.004 25.8 11.1 39 311-349 20-58 (97)
103 3jsv_C NF-kappa-B essential mo 49.5 1.2E+02 0.0041 25.7 9.6 33 140-176 4-36 (94)
104 1tu3_F RAB GTPase binding effe 49.1 22 0.00074 29.4 4.6 49 275-323 5-53 (79)
105 3abh_A Pacsin2, protein kinase 48.8 1.7E+02 0.0057 27.1 19.9 170 108-281 52-251 (312)
106 1jcd_A Major outer membrane li 48.5 67 0.0023 24.5 6.9 17 220-236 33-49 (52)
107 3ni0_A Bone marrow stromal ant 48.1 81 0.0028 27.0 8.1 67 257-330 21-87 (99)
108 3a2a_A Voltage-gated hydrogen 47.9 25 0.00086 27.6 4.5 32 347-378 13-48 (58)
109 3twe_A Alpha4H; unknown functi 47.7 14 0.00048 24.9 2.7 18 404-431 8-25 (27)
110 3viq_B Mating-type switching p 47.4 33 0.0011 28.6 5.5 43 215-257 4-52 (85)
111 2p22_C Protein SRN2; endosome, 47.1 81 0.0028 29.1 8.7 17 83-99 34-50 (192)
112 2lw1_A ABC transporter ATP-bin 46.8 1.1E+02 0.0037 24.4 8.6 24 139-162 23-46 (89)
113 3a7p_A Autophagy protein 16; c 46.4 1E+02 0.0034 28.1 8.9 27 221-247 98-124 (152)
114 4fla_A Regulation of nuclear P 45.6 1.4E+02 0.0049 26.5 9.8 25 239-263 71-95 (152)
115 1sjj_A Actinin; 3-helix bundle 45.4 2.9E+02 0.01 29.0 27.4 45 394-438 575-619 (863)
116 2no2_A HIP-I, huntingtin-inter 44.9 1.4E+02 0.0048 25.2 10.3 74 256-339 10-83 (107)
117 3gp4_A Transcriptional regulat 44.4 1.5E+02 0.0051 25.3 10.1 36 153-188 78-113 (142)
118 1gk4_A Vimentin; intermediate 44.3 1.2E+02 0.0041 24.2 9.2 47 139-185 2-48 (84)
119 2pms_C Pneumococcal surface pr 43.9 1.2E+02 0.004 26.9 8.7 59 166-231 64-122 (125)
120 2jee_A YIIU; FTSZ, septum, coi 43.2 1.4E+02 0.0048 24.6 9.4 61 269-329 7-67 (81)
121 1uix_A RHO-associated kinase; 42.6 83 0.0028 25.5 7.0 47 216-264 1-53 (71)
122 1s1c_X RHO-associated, coiled- 42.1 85 0.0029 25.4 7.0 47 216-264 3-53 (71)
123 3lay_A Zinc resistance-associa 41.8 43 0.0015 30.5 5.9 56 282-337 85-140 (175)
124 2l7b_A Apolipoprotein E, APO-E 40.9 56 0.0019 31.9 7.0 167 237-439 33-208 (307)
125 4h22_A Leucine-rich repeat fli 40.8 1.2E+02 0.0041 26.1 8.1 69 269-337 17-88 (103)
126 2xnx_M M protein, M1-BC1; cell 40.7 1.4E+02 0.0047 27.1 8.9 20 257-276 118-137 (146)
127 3q8t_A Beclin-1; autophagy, AT 40.0 1.6E+02 0.0054 24.3 11.8 86 263-348 6-91 (96)
128 2b9c_A Striated-muscle alpha t 39.9 1.6E+02 0.0055 26.0 9.1 72 354-432 37-108 (147)
129 1sjj_A Actinin; 3-helix bundle 39.2 3.7E+02 0.012 28.3 23.6 29 231-259 466-494 (863)
130 3bas_A Myosin heavy chain, str 39.0 1.5E+02 0.0052 23.9 10.5 30 317-346 21-50 (89)
131 3mq9_A Bone marrow stromal ant 39.0 2.8E+02 0.0097 27.0 14.6 20 311-330 444-463 (471)
132 1ci6_A Transcription factor AT 38.5 99 0.0034 23.6 6.6 40 316-355 22-61 (63)
133 1deb_A APC protein, adenomatou 38.4 1.1E+02 0.0039 23.6 6.8 43 303-352 3-45 (54)
134 1gd2_E Transcription factor PA 38.3 57 0.0019 26.0 5.4 41 224-264 27-67 (70)
135 4dci_A Uncharacterized protein 38.2 1.8E+02 0.0061 26.2 9.2 64 141-204 32-100 (150)
136 1lj2_A NSP3-C, nonstructural R 37.0 15 0.00051 32.0 2.0 30 236-265 2-31 (110)
137 1gd2_E Transcription factor PA 36.4 1E+02 0.0034 24.5 6.5 35 317-351 36-70 (70)
138 1a93_B MAX protein, coiled coi 35.8 46 0.0016 23.7 4.0 27 161-187 5-31 (34)
139 3fpp_A Macrolide-specific effl 35.8 86 0.0029 29.0 7.1 14 370-383 129-142 (341)
140 3m3w_A Pacsin3, protein kinase 35.2 2.9E+02 0.01 26.1 15.9 59 219-281 183-242 (320)
141 2xnx_M M protein, M1-BC1; cell 35.1 1.7E+02 0.0057 26.6 8.5 28 292-319 69-96 (146)
142 2k48_A Nucleoprotein; viral pr 34.5 97 0.0033 26.9 6.6 47 370-416 43-101 (107)
143 4fla_A Regulation of nuclear P 34.4 2.2E+02 0.0076 25.3 9.2 78 89-182 67-147 (152)
144 1q08_A Zn(II)-responsive regul 34.3 1.6E+02 0.0055 22.8 7.7 63 126-189 9-72 (99)
145 3si5_X Protein CASC5; BUBR1-bl 34.2 15 0.00052 24.4 1.2 11 114-124 12-22 (24)
146 1go4_E MAD1 (mitotic arrest de 34.2 1.2E+02 0.004 25.9 6.9 33 317-349 12-44 (100)
147 4emc_A Monopolin complex subun 33.5 1.1E+02 0.0036 28.9 7.2 42 340-391 22-63 (190)
148 1gs9_A Apolipoprotein E, APOE4 33.4 2.5E+02 0.0087 25.0 9.5 41 312-352 101-142 (165)
149 2k48_A Nucleoprotein; viral pr 32.9 2.4E+02 0.0083 24.4 8.9 68 281-381 34-101 (107)
150 4dyl_A Tyrosine-protein kinase 32.8 3.7E+02 0.013 26.4 32.6 39 293-331 306-344 (406)
151 3oja_A Leucine-rich immune mol 32.6 3.6E+02 0.012 26.3 17.8 24 161-184 365-388 (487)
152 3jsv_C NF-kappa-B essential mo 32.3 2.3E+02 0.0079 24.0 9.3 54 279-332 37-90 (94)
153 2f23_A Anti-cleavage anti-GREA 31.8 57 0.0019 28.5 4.9 56 319-381 12-72 (156)
154 3htk_A Structural maintenance 31.6 1.2E+02 0.004 22.2 5.9 41 287-327 10-50 (60)
155 4emc_A Monopolin complex subun 30.3 46 0.0016 31.3 4.2 51 253-303 5-55 (190)
156 4fi5_A Nucleoprotein; structur 29.7 1.3E+02 0.0043 26.4 6.6 48 369-416 29-88 (113)
157 1bg1_A Protein (transcription 29.6 5.6E+02 0.019 27.6 14.2 29 213-241 14-42 (596)
158 1cxz_B Protein (PKN); protein- 29.4 2.3E+02 0.0078 23.5 7.8 59 190-251 24-85 (86)
159 1vp7_A Exodeoxyribonuclease VI 28.9 91 0.0031 26.5 5.4 45 376-420 37-81 (100)
160 3mq7_A Bone marrow stromal ant 28.9 3E+02 0.01 24.3 9.2 13 262-274 33-45 (121)
161 3ni0_A Bone marrow stromal ant 28.9 2.8E+02 0.0095 23.8 8.7 36 291-326 20-55 (99)
162 1yke_B RNA polymerase II holoe 28.8 75 0.0026 28.3 5.2 42 400-441 88-133 (151)
163 3hhm_B NISH2 P85alpha; PI3KCA, 28.7 4.5E+02 0.015 26.2 13.9 120 161-299 159-278 (373)
164 3trt_A Vimentin; cytoskeleton, 28.5 2E+02 0.0068 22.0 9.0 64 167-239 6-69 (77)
165 3tl4_X Glutaminyl-tRNA synthet 28.4 22 0.00076 32.8 1.8 49 79-128 108-160 (187)
166 3iox_A AGI/II, PA; alpha helix 28.3 5.6E+02 0.019 27.2 14.1 45 133-177 4-48 (497)
167 4dk0_A Putative MACA; alpha-ha 28.2 1.2E+02 0.004 28.4 6.7 7 409-415 141-147 (369)
168 3cve_A Homer protein homolog 1 27.6 1.6E+02 0.0056 23.7 6.4 27 279-306 12-38 (72)
169 3cvf_A Homer-3, homer protein 27.5 1.6E+02 0.0054 24.1 6.4 55 279-348 18-72 (79)
170 3f1i_H Hepatocyte growth facto 27.5 1.7E+02 0.0059 25.0 6.8 74 115-190 2-75 (98)
171 2ic9_A Nucleocapsid protein; h 26.8 1.6E+02 0.0055 25.1 6.6 47 370-416 13-71 (96)
172 1lwu_C Fibrinogen gamma chain; 26.8 1.4E+02 0.0049 29.6 7.2 52 349-421 6-57 (323)
173 3ajw_A Flagellar FLIJ protein; 26.4 2.7E+02 0.0092 22.8 14.5 92 292-386 8-105 (150)
174 2w83_C C-JUN-amino-terminal ki 26.1 2.8E+02 0.0094 22.9 8.2 43 306-348 33-75 (77)
175 2lem_A Apolipoprotein A-I; lip 25.8 3.8E+02 0.013 24.3 12.5 100 253-352 15-123 (216)
176 3mq7_A Bone marrow stromal ant 25.5 3.5E+02 0.012 23.9 10.4 37 290-326 26-62 (121)
177 2ve7_A Kinetochore protein HEC 25.2 1.8E+02 0.0063 28.1 7.6 61 114-184 146-206 (315)
178 3vp9_A General transcriptional 23.7 92 0.0031 26.2 4.5 28 279-306 11-38 (92)
179 2p4v_A Transcription elongatio 23.6 1.3E+02 0.0044 26.5 5.7 56 319-381 11-72 (158)
180 2x3v_A Syndapin I, protein kin 23.5 4.5E+02 0.015 24.4 24.0 168 108-279 43-240 (337)
181 3htk_A Structural maintenance 23.5 2.2E+02 0.0074 20.8 7.4 23 356-378 34-56 (60)
182 2yy0_A C-MYC-binding protein; 23.4 72 0.0024 24.0 3.4 32 318-349 20-51 (53)
183 1ik9_A DNA repair protein XRCC 23.4 3E+02 0.01 25.6 8.4 40 243-282 135-174 (213)
184 3qne_A Seryl-tRNA synthetase, 23.0 3.4E+02 0.012 28.2 9.5 16 422-437 183-198 (485)
185 1q06_A Transcriptional regulat 23.0 2.3E+02 0.008 23.7 7.0 34 153-186 76-109 (135)
186 2dq0_A Seryl-tRNA synthetase; 22.9 3.1E+02 0.011 27.9 9.1 33 279-311 28-60 (455)
187 4e61_A Protein BIM1; EB1-like 22.7 2E+02 0.0068 24.8 6.4 47 289-342 4-50 (106)
188 1go4_E MAD1 (mitotic arrest de 22.6 2.3E+02 0.0078 24.1 6.7 65 349-413 13-84 (100)
189 1nkp_B MAX protein, MYC proto- 22.4 2E+02 0.0068 22.4 6.0 67 110-187 12-78 (83)
190 2xus_A Breast cancer metastasi 22.0 80 0.0027 24.0 3.4 32 274-305 5-36 (49)
191 2b9c_A Striated-muscle alpha t 22.0 4.1E+02 0.014 23.4 9.9 40 363-402 95-137 (147)
192 2fcw_A Alpha-2-macroglobulin r 21.7 4E+02 0.014 23.1 9.8 59 369-435 41-102 (109)
193 1nfn_A Apolipoprotein E3; lipi 21.3 4.5E+02 0.015 23.7 9.5 61 271-332 24-88 (191)
194 3w03_C DNA repair protein XRCC 20.8 71 0.0024 29.7 3.5 41 230-270 142-182 (184)
195 2ic6_A Nucleocapsid protein; h 20.6 2.7E+02 0.0093 22.9 6.6 49 368-416 11-71 (78)
196 1t6f_A Geminin; coiled-coil, c 20.5 72 0.0024 23.1 2.7 28 255-282 8-35 (37)
197 3efg_A Protein SLYX homolog; x 20.1 1.6E+02 0.0054 23.6 5.0 40 149-188 11-53 (78)
198 1nkp_B MAX protein, MYC proto- 20.1 1E+02 0.0035 24.1 3.9 7 291-297 70-76 (83)
No 1
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=99.26 E-value=6.2e-12 Score=125.75 Aligned_cols=54 Identities=28% Similarity=0.375 Sum_probs=49.5
Q ss_pred HHhHHHHHHHHHhHHHHhhhhhhhHHhHHhhhhhhhhhcccceeeeeeccCCCC
Q 012561 400 EGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILELEVNLSSSALFRRGLKD 453 (461)
Q Consensus 400 E~Qk~~i~eLq~RLadaE~kiiEGEkLRKKLHNTILELKGNIRv~crvrp~l~~ 453 (461)
++....|++++.++.+...++++.|.+||+|||+|.||||||||||||||+++.
T Consensus 20 ~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~vRvRP~~~~ 73 (403)
T 4etp_A 20 AALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVYLRIRPALKN 73 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEEEECCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCc
Confidence 456677888889999999999999999999999999999999999999999876
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.11 E-value=2.3e-06 Score=73.64 Aligned_cols=11 Identities=9% Similarity=0.133 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 012561 141 ERLRNALELSE 151 (461)
Q Consensus 141 ekL~~~Le~~e 151 (461)
..|...+...+
T Consensus 23 ~~l~~~l~~l~ 33 (284)
T 1c1g_A 23 DEAEADKKAAE 33 (284)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 3
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=99.11 E-value=6.3e-11 Score=119.19 Aligned_cols=68 Identities=24% Similarity=0.326 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhhhhHHhHHhhhhhhhhhcccceeeeeeccCC
Q 012561 372 RSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILELEVNLSSSALFRRGL 451 (461)
Q Consensus 372 ~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~kiiEGEkLRKKLHNTILELKGNIRv~crvrp~l 451 (461)
.+|+.+|....++. ++-.+.++.++..+++.+.++...+.+||+|||+|.||||||||||||||++
T Consensus 6 ~~l~~el~~~~~~~--------------~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnIrV~vRvRP~~ 71 (412)
T 3u06_A 6 AALSTEVVHLRQRT--------------EELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNIRVFCRIRPPL 71 (412)
T ss_dssp HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEECCCC
T ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEcCCCC
Confidence 45666665554443 4455667888888888899999999999999999999999999999999998
Q ss_pred CC
Q 012561 452 KD 453 (461)
Q Consensus 452 ~~ 453 (461)
+.
T Consensus 72 ~~ 73 (412)
T 3u06_A 72 ES 73 (412)
T ss_dssp GG
T ss_pred ch
Confidence 64
No 4
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.06 E-value=4.9e-06 Score=71.60 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHhHh
Q 012561 218 SEDLGKAQEELQSANQRIAS 237 (461)
Q Consensus 218 seeL~k~q~E~~~anqqi~s 237 (461)
..++.++..++..+..++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~ 94 (284)
T 1c1g_A 75 EKKATDAEADVASLNRRIQL 94 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 5
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.73 E-value=5.9e-08 Score=107.35 Aligned_cols=133 Identities=14% Similarity=0.154 Sum_probs=46.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHH
Q 012561 163 NKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMY 242 (461)
Q Consensus 163 ~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmy 242 (461)
.+++++...+..+...+..+++++..-+.++.++...+..+.+....++.....+..++.+++.++..+..++..+++..
T Consensus 864 ~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~elee~ee~l 943 (1184)
T 1i84_S 864 EELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERS 943 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555655556666666666666666666666666666666666666666666655555444
Q ss_pred HHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHH
Q 012561 243 KLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQ 295 (461)
Q Consensus 243 KRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq 295 (461)
..+++=...+++=-..|+.+++...+.+..+++++..+-..+..|.+....++
T Consensus 944 ~el~~e~~~le~el~~L~~eleele~~l~~l~~e~~~le~~l~~l~~el~~le 996 (1184)
T 1i84_S 944 QQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIME 996 (1184)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433333333333455555555555566666665555555444444333333
No 6
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.67 E-value=7e-08 Score=106.73 Aligned_cols=42 Identities=21% Similarity=0.329 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhHHHHhhhhhhhHHhHHhhhhhhhhhccccee
Q 012561 402 QKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILELEVNLSS 443 (461)
Q Consensus 402 Qk~~i~eLq~RLadaE~kiiEGEkLRKKLHNTILELKGNIRv 443 (461)
....|.+|++.|.+.+..+-.-+.-++.|...+-+|++-|.-
T Consensus 1121 Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~Iee 1162 (1184)
T 1i84_S 1121 LESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELED 1162 (1184)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555544443333344455566666666665543
No 7
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=97.04 E-value=0.016 Score=53.34 Aligned_cols=70 Identities=20% Similarity=0.244 Sum_probs=60.1
Q ss_pred HhhHHHHHHHHHHHHHHhhhhhhhhhhHH-------HHHHHHHHHHHhHH-----------hhhhhhHHHHHHhhHH---
Q 012561 310 RQKDALVHEVASMRVELQQVRDDRDHQLS-------QVQALTAEVIKHKE-----------LAVSSEDLEARCASQS--- 368 (461)
Q Consensus 310 kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~-------QvqsL~aE~~~ykE-----------l~~k~~~LEetCssQ~--- 368 (461)
.+|++|-.|+..|.+.|.+-|.+|.+-.. .|++|..|+...++ |.-+++.||-.|++..
T Consensus 62 ~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~ 141 (168)
T 3o0z_A 62 NSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDL 141 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 35788999999999999999999988766 78889999888887 8889999999999988
Q ss_pred -HHHHHHHHHHH
Q 012561 369 -NQIRSLSDQLA 379 (461)
Q Consensus 369 -eqI~~Lq~QLa 379 (461)
=.+++||+.+.
T Consensus 142 ~~eLKalQ~~~e 153 (168)
T 3o0z_A 142 NYKLKSLQQRLE 153 (168)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 66888887765
No 8
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.00 E-value=0.059 Score=50.25 Aligned_cols=116 Identities=16% Similarity=0.209 Sum_probs=76.1
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHH
Q 012561 126 IKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKE 205 (461)
Q Consensus 126 IrWfqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkE 205 (461)
|.||..+=..|..+...++..|+.-...--++|++|...++.++..+.+|+..+..|...+..-.
T Consensus 12 ~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k--------------- 76 (189)
T 2v71_A 12 TAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALK--------------- 76 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 56777777778888888999999999999999999999999999999999988888876654322
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHH
Q 012561 206 TRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDA 265 (461)
Q Consensus 206 aR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~ 265 (461)
.-...++...+..+.. +...|..+.+++..|+.|-..|=|=|--|-.-.-.
T Consensus 77 --~K~~~~~~e~~~~~~~-------Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~ 127 (189)
T 2v71_A 77 --EKLEHQYAQSYKQVSV-------LEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRA 127 (189)
T ss_dssp --HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 1112222222222222 23334455566666666666666655544433333
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.88 E-value=0.0055 Score=61.37 Aligned_cols=144 Identities=15% Similarity=0.262 Sum_probs=70.4
Q ss_pred HHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhh
Q 012561 233 QRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQK 312 (461)
Q Consensus 233 qqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK 312 (461)
+.+.+++++.++..+.+...-+-+..|+.++......+.+++.+...+...+..++... .+......+. +
T Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i---~~~~~~~~~~-------~ 497 (597)
T 3oja_B 428 DTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEI---DTNLRRYRLP-------K 497 (597)
T ss_dssp --------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHTTCC-------C
T ss_pred cchHHHHHHHHHHHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhhhcCcc-------c
Confidence 45566777777777777777777788888887777777777777766666555555432 2222222211 2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH----HHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhh
Q 012561 313 DALVHEVASMRVELQQVRDDRDHQLSQVQALTAEV----IKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLE 386 (461)
Q Consensus 313 ~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~----~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk 386 (461)
+.+......+..++++++++-.....+.+.+..++ ..|+.+-.+...||..|..+++++..|.++++..+.+++
T Consensus 498 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~ 575 (597)
T 3oja_B 498 DGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVK 575 (597)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 22222333444444444444444444445454444 444446668889999999999999999988887766554
No 10
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.82 E-value=0.07 Score=49.95 Aligned_cols=81 Identities=12% Similarity=0.178 Sum_probs=59.7
Q ss_pred hhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhH
Q 012561 258 KLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQL 337 (461)
Q Consensus 258 kLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~ 337 (461)
.|+.+++.+...+..++++-..+++.+..+......++..++..+....++... +-.++..++.++..++..|+...
T Consensus 94 aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~---~~~~~~e~~~e~~~l~~~r~~l~ 170 (256)
T 3na7_A 94 SLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESL---VENEVKNIKETQQIIFKKKEDLV 170 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888888888888888888888877776666555444 34445556677777778887776
Q ss_pred HHHH
Q 012561 338 SQVQ 341 (461)
Q Consensus 338 ~Qvq 341 (461)
..+.
T Consensus 171 ~~i~ 174 (256)
T 3na7_A 171 EKTE 174 (256)
T ss_dssp HTSC
T ss_pred hcCC
Confidence 6553
No 11
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.54 E-value=1.7 Score=54.11 Aligned_cols=212 Identities=14% Similarity=0.197 Sum_probs=123.9
Q ss_pred ChHHhhHhHHHHHHHH--HHHHHHHHHhhh-------hhHHHHHHHHHHHHHHHhhHHHHHHHHH------chHHHHHHH
Q 012561 107 NYKERCENMMDYIKRL--RLCIKWFQELEG-------DYAFEHERLRNALELSEQKCAEMELALR------NKEEELNLI 171 (461)
Q Consensus 107 dyKgr~EqM~dyIKrL--r~CIrWfqelE~-------~y~~EqekL~~~Le~~ek~~~e~E~~lk------~k~eEL~~~ 171 (461)
+++..+-+||-||-.- ..|.+.|+++=. +|+.=+.-.+.- ..+|..+++.+.. .|+.|....
T Consensus 1859 ~~~~~~~~~~~~iH~sv~~~s~~~~~~~~R~~yvTP~syLeli~~y~~l---l~~K~~el~~~~~rl~~GL~KL~et~~~ 1935 (3245)
T 3vkg_A 1859 SHRDAVVSSLVYIHQTIGEANIRLLKRQGRQNYVTPRHYLDFINQVVLL---INEKRDQLEEEQLHLNIGLKKLRDTEAQ 1935 (3245)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777643 567776665421 244323322222 2333334433332 477788888
Q ss_pred HHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhH
Q 012561 172 IVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSS 251 (461)
Q Consensus 172 i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTS 251 (461)
+.+|++.++.++..|..-..+--+++....++.+. ||+.++...++=.++. .+...++
T Consensus 1936 V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~---ae~~k~~v~~~~~~~~-------~~~~ei~------------ 1993 (3245)
T 3vkg_A 1936 VKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQA---AEIKQKDARELQVQLD-------VRNKEIA------------ 1993 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-------HHHHHHH------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-------HHHHHHH------------
Confidence 88899998888888876555444455555544332 3333322211111111 1111111
Q ss_pred HHhhhhhhhccHHHHH------HHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHH
Q 012561 252 LQHYNTKLQKDIDAAH------ESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVE 325 (461)
Q Consensus 252 LQQYNSkLQaDl~~~~------e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~E 325 (461)
.--..-++||+.|. +.+..++++-....+.|..++...+.|++.|+..++.-++++++|..|..|++....-
T Consensus 1994 --~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~k 2071 (3245)
T 3vkg_A 1994 --VQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNK 2071 (3245)
T ss_dssp --HHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112345655543 5677777777777778888888888888888888888889999999888888766555
Q ss_pred HhhhhhhhhhhHHHHHHHHHHHHHhHH
Q 012561 326 LQQVRDDRDHQLSQVQALTAEVIKHKE 352 (461)
Q Consensus 326 LqqvRdDRDr~~~QvqsL~aE~~~ykE 352 (461)
|++ .-.=+..|.+|-..+.+
T Consensus 2072 l~r-------A~~Li~gL~~Ek~RW~~ 2091 (3245)
T 3vkg_A 2072 VDR-------SIALLDNLNSERGRWEQ 2091 (3245)
T ss_dssp HHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHH-------HHHHHHhhhhccccHHH
Confidence 443 33446778888877777
No 12
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.54 E-value=0.34 Score=45.28 Aligned_cols=176 Identities=14% Similarity=0.110 Sum_probs=75.1
Q ss_pred HHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhh--hhHHHHHHHHHH
Q 012561 269 SIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRD--HQLSQVQALTAE 346 (461)
Q Consensus 269 ~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRD--r~~~QvqsL~aE 346 (461)
.+.++......+-..+..|......++.++...+...++.-++...+-.++..++.-+...+.-=+ +.--+.++|+.|
T Consensus 19 ~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kE 98 (256)
T 3na7_A 19 EIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIE 98 (256)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 444444444444444555555555555555555555544444444444444444433322221100 011235566666
Q ss_pred HHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhH----HHHHHHHHhHHHHhhh---
Q 012561 347 VIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQK----KLINELRNHLEDAEYK--- 419 (461)
Q Consensus 347 ~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk----~~i~eLq~RLadaE~k--- 419 (461)
+...+. +...||+.=.-.-++|..++..++.++..+.-..-...+.+.++...- ..+..|..+-+...-.
T Consensus 99 ie~~~~---~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i~~ 175 (256)
T 3na7_A 99 EDIAKE---RSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEP 175 (256)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 666555 333333333333334444444333333333322222222222222221 2222222222222111
Q ss_pred --hhhhHHhHHhhhhh-hhhhcccceeeeee
Q 012561 420 --LIEGEKLRKRLHNT-ILELEVNLSSSALF 447 (461)
Q Consensus 420 --iiEGEkLRKKLHNT-ILELKGNIRv~crv 447 (461)
|-.=+++|+..+++ |-.+.|+.=.-|++
T Consensus 176 ~lL~~Yerir~~~~g~avv~v~~~~C~GC~~ 206 (256)
T 3na7_A 176 KIYSFYERIRRWAKNTSIVTIKKQACGGCFI 206 (256)
T ss_dssp HHHHHHHHHHHHHGGGSEEECBTTBCTTTCC
T ss_pred HHHHHHHHHHHhCCCceEEEeeCCccCCCCe
Confidence 11236777755554 66777776656654
No 13
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.44 E-value=0.13 Score=57.74 Aligned_cols=33 Identities=36% Similarity=0.378 Sum_probs=2.6
Q ss_pred HHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 012561 159 LALRNKEEELNLIIVELRKSFASLQEKLAKEES 191 (461)
Q Consensus 159 ~~lk~k~eEL~~~i~ELr~~~~SLqe~L~kees 191 (461)
..|.++++||..-+.++.+....|++++...+.
T Consensus 924 ~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~ 956 (1080)
T 2dfs_A 924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEI 956 (1080)
T ss_dssp ---------------------------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 445555566666555555555556655544443
No 14
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.43 E-value=0.27 Score=42.33 Aligned_cols=79 Identities=22% Similarity=0.258 Sum_probs=51.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHH----hHHHHHHHHHhHHHHhhhhhhhHHhHHhhhhhh
Q 012561 359 DLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEG----QKKLINELRNHLEDAEYKLIEGEKLRKRLHNTI 434 (461)
Q Consensus 359 ~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~----Qk~~i~eLq~RLadaE~kiiEGEkLRKKLHNTI 434 (461)
.||+....-...+..|+.||.+..+-+.-+ .+.+..... --..|.++++||++-|-..-+-..-+|||...|
T Consensus 38 ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~----EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~ 113 (129)
T 2fxo_A 38 ELEEKMVSLLQEKNDLQLQVQAEQDNLADA----EERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDEC 113 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445556666666655444322 122222222 226789999999999999999999999999999
Q ss_pred hhhcccc
Q 012561 435 LELEVNL 441 (461)
Q Consensus 435 LELKGNI 441 (461)
-+|+-.|
T Consensus 114 ~~Lk~~l 120 (129)
T 2fxo_A 114 SELKRDI 120 (129)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988655
No 15
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=95.05 E-value=0.0032 Score=63.38 Aligned_cols=27 Identities=15% Similarity=-0.031 Sum_probs=24.4
Q ss_pred HhHHhhhhhhhhhcccceeeeeeccCCC
Q 012561 425 KLRKRLHNTILELEVNLSSSALFRRGLK 452 (461)
Q Consensus 425 kLRKKLHNTILELKGNIRv~crvrp~l~ 452 (461)
.+|+++||...| +|||||||||||+.+
T Consensus 38 ~~~~~~~~~~~~-~~~I~V~vRvRP~~~ 64 (387)
T 2heh_A 38 ECHPLTMTDPIE-EHRICVCVRKRPLNK 64 (387)
T ss_dssp CCBCCCTTSCCC-CCSEEEEEEECCCCH
T ss_pred ccCCCccCCCCC-CCCeEEEEECCCCCh
Confidence 368999999988 999999999999975
No 16
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=95.00 E-value=2 Score=39.01 Aligned_cols=107 Identities=25% Similarity=0.360 Sum_probs=63.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHH
Q 012561 216 SLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQ 295 (461)
Q Consensus 216 ~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq 295 (461)
....||+++..|...+...+.-.+-..|| .|+||--.+| |.-+.+|--. --|||.+|||+|+.-=| .|.
T Consensus 57 ~HQKEi~~Lrae~~~~QRn~~K~~~~Lkr-----n~~qQnQQSl--DiRKLrELEA-DLKEKDsMVe~LT~TiG---~Lr 125 (167)
T 4gkw_A 57 AHQKEIGKLRAELGTAQRNLEKADQLLKR-----NSQQQNQQSL--DMRKLGELEA-DLKEKDSMVESLTETIG---ILR 125 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH--HHHHTHHHHH-THHHHHHHHHHHHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHh-----hhHHHhHhhh--hHHHHHHHHh-HHhhhhHHHHHHHHHHH---HHH
Confidence 34567777777777776666666655555 2445543332 4444444322 34899999999876554 455
Q ss_pred HHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhh
Q 012561 296 EQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDR 333 (461)
Q Consensus 296 ~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDR 333 (461)
..|.-.|.--+|.|---+.|--|-+.+..-|+-.|..|
T Consensus 126 KELEdEklK~~E~MdSFE~LkvENE~vkerl~mYR~QR 163 (167)
T 4gkw_A 126 KELENEKLKAAENMDSFEKLSMENENLKEKIAHYRAQR 163 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhc
Confidence 56666666666666555556555555555555554433
No 17
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=94.82 E-value=0.22 Score=42.69 Aligned_cols=71 Identities=20% Similarity=0.346 Sum_probs=51.7
Q ss_pred HHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHH-------HHHHHHHHhHH
Q 012561 280 IVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQ-------ALTAEVIKHKE 352 (461)
Q Consensus 280 ivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~Qvq-------sL~aE~~~ykE 352 (461)
+---+.+|+|...||..+|+-+...-..++++. ..-|..|-.+|+++|.|=.+++.+-| +|..||++|+-
T Consensus 48 L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~---q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatYRk 124 (129)
T 3tnu_B 48 LRAEIDNVKKQCANLQNAIADAEQRGELALKDA---RNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATYRK 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333466778888888888888777766666554 44456788889999988887766654 67789999975
Q ss_pred h
Q 012561 353 L 353 (461)
Q Consensus 353 l 353 (461)
|
T Consensus 125 L 125 (129)
T 3tnu_B 125 L 125 (129)
T ss_dssp T
T ss_pred h
Confidence 3
No 18
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=94.80 E-value=0.043 Score=55.07 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.9
Q ss_pred HHhhhhhhhhhcccceeeeeeccC
Q 012561 427 RKRLHNTILELEVNLSSSALFRRG 450 (461)
Q Consensus 427 RKKLHNTILELKGNIRv~crvrp~ 450 (461)
||||-|+|-||||.||+|+-+-+=
T Consensus 47 RRkLENSIdElKG~IRcFAYi~~~ 70 (333)
T 4etp_B 47 SRRLENSIIEQKGTMRVYAYVMEQ 70 (333)
T ss_dssp HHHHHHHHHHHHTCCEEEEEECCS
T ss_pred HHHHhhhHHHhcCcEEEEEEECcc
Confidence 789999999999999999998763
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.72 E-value=0.17 Score=50.64 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=15.1
Q ss_pred hhhHHhHHHHHHHHHhHHHHhhhhhhhHHhHHhhhhhhhhhcccc
Q 012561 397 TEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILELEVNL 441 (461)
Q Consensus 397 te~E~Qk~~i~eLq~RLadaE~kiiEGEkLRKKLHNTILELKGNI 441 (461)
..++++++.+.+++.-++. ++.++-.-+-++.||-
T Consensus 551 ~~~~~~~~~~~~l~~e~~~----------~~~~~~~l~~~~~~~~ 585 (597)
T 3oja_B 551 KQLDNKRAKQAELRQETSL----------KRQKVKQLEAKKNRNP 585 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHTTC---
T ss_pred HHHhhhhhHHHHHHHHHHH----------HHHHHHHHHHHhcCCC
Confidence 3344444445444444433 4444444445566664
No 20
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.64 E-value=0.6 Score=52.40 Aligned_cols=20 Identities=5% Similarity=0.134 Sum_probs=9.3
Q ss_pred HHHhhhhhHHHHHHHhhhhh
Q 012561 268 ESIKRGEKEKSAIVENLSTL 287 (461)
Q Consensus 268 e~~~r~eKEK~tivEnls~L 287 (461)
+.++.+++|++-+-..+..|
T Consensus 1023 ~kv~~L~~e~~~L~qq~~~l 1042 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKEEL 1042 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555554444444333
No 21
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=94.19 E-value=0.24 Score=40.05 Aligned_cols=67 Identities=19% Similarity=0.347 Sum_probs=52.8
Q ss_pred hhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHH-------HHHHHHHHhHHh
Q 012561 284 LSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQ-------ALTAEVIKHKEL 353 (461)
Q Consensus 284 ls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~Qvq-------sL~aE~~~ykEl 353 (461)
+.+|+|...||..+|+-+...-.-++++ +..-+..|-.+|+++|.|-.+++.+-| +|..||++|+-|
T Consensus 3 l~~l~~~~~sLE~~l~e~e~~~~~~~~~---~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkL 76 (84)
T 1gk4_A 3 VDALKGTNESLERQMREMEENFAVEAAN---YQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKL 76 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 5678999999999999888776665544 555666777899999999888887766 567899999863
No 22
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=94.19 E-value=0.0089 Score=60.64 Aligned_cols=26 Identities=15% Similarity=-0.067 Sum_probs=23.5
Q ss_pred hHHhhhhhhhhhcccceeeeeeccCCC
Q 012561 426 LRKRLHNTILELEVNLSSSALFRRGLK 452 (461)
Q Consensus 426 LRKKLHNTILELKGNIRv~crvrp~l~ 452 (461)
+|+..||...| +|||||||||||+.+
T Consensus 59 ~~~~~~~~~~~-~~~I~V~vRvRPl~~ 84 (410)
T 1v8k_A 59 CSPLTVTDPIE-EHRICVCVRKRPLNK 84 (410)
T ss_dssp CCTTTTTCTTS-CCCEEEEEEECCCCH
T ss_pred cCCCccCCcCC-CCCeEEEEEeCCCCh
Confidence 48889999888 999999999999975
No 23
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=93.83 E-value=0.012 Score=59.94 Aligned_cols=20 Identities=15% Similarity=-0.006 Sum_probs=16.7
Q ss_pred hhhhhcccceeeeeeccCCC
Q 012561 433 TILELEVNLSSSALFRRGLK 452 (461)
Q Consensus 433 TILELKGNIRv~crvrp~l~ 452 (461)
+-.+++|||||||||||+++
T Consensus 32 ~~~~~~~~vrV~vRvRP~~~ 51 (443)
T 2owm_A 32 VSKDPGANVRVVVRVRAFLP 51 (443)
T ss_dssp --CCCCEECEEEEEEECCCH
T ss_pred ccCCCCCCeEEEEEeCCCCh
Confidence 44689999999999999975
No 24
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=93.78 E-value=4.1 Score=37.54 Aligned_cols=88 Identities=16% Similarity=0.186 Sum_probs=48.7
Q ss_pred HHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHH
Q 012561 160 ALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASIN 239 (461)
Q Consensus 160 ~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slq 239 (461)
++.-..-.+...+.||+..|..|+..-..-+-+.+..=..+.-|+..|.-.+...+.|..-+.-++.|+.+...+...+.
T Consensus 38 El~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~ 117 (168)
T 3o0z_A 38 EMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVE 117 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555555555555555555555555555555555566666666666666666655555666665555555555
Q ss_pred HHHHHHHH
Q 012561 240 DMYKLLQE 247 (461)
Q Consensus 240 DmyKRLQE 247 (461)
.-++.|||
T Consensus 118 ~e~r~L~E 125 (168)
T 3o0z_A 118 GERKEAQD 125 (168)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 25
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=93.75 E-value=0.35 Score=41.58 Aligned_cols=68 Identities=21% Similarity=0.246 Sum_probs=49.4
Q ss_pred hhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHH-------HHHHHHHHhHHh
Q 012561 283 NLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQ-------ALTAEVIKHKEL 353 (461)
Q Consensus 283 nls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~Qvq-------sL~aE~~~ykEl 353 (461)
-+..|+|...||..+|+-+...-..++++ +..-|..|-.+|+++|.|=.+++.+-| +|..||++|+-|
T Consensus 53 el~~l~~~~~sLE~~l~e~e~~~~~~l~~---~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYRkL 127 (131)
T 3tnu_A 53 ELQSQLSMKASLENSLEETKGRYCMQLAQ---IQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYRRL 127 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667777888888887777766666554 444556778888888888777766655 677899999863
No 26
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=93.56 E-value=0.76 Score=39.28 Aligned_cols=84 Identities=14% Similarity=0.216 Sum_probs=60.0
Q ss_pred cHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Q 012561 262 DIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQ 341 (461)
Q Consensus 262 Dl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~Qvq 341 (461)
.+......+.-+..+|+.++-.+.++++ .++--|.--++.+..+..+-+++..||.++....=-|-..-++|+
T Consensus 21 ~I~~LR~qid~~~~e~a~l~leldn~~~-------~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~ie 93 (119)
T 3ol1_A 21 EMRELRRQVDQLTNDKARVEVERDNLAE-------DIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVE 93 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHH
Confidence 3444555666667777777777777666 445555555667777888888888888888777777777778888
Q ss_pred HHHHHHHHhHH
Q 012561 342 ALTAEVIKHKE 352 (461)
Q Consensus 342 sL~aE~~~ykE 352 (461)
+|..|+.-.|-
T Consensus 94 sL~eEl~FLKk 104 (119)
T 3ol1_A 94 SLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888876654
No 27
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.49 E-value=16 Score=45.90 Aligned_cols=47 Identities=15% Similarity=0.169 Sum_probs=24.8
Q ss_pred HHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Q 012561 294 LQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQV 340 (461)
Q Consensus 294 Lq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~Qv 340 (461)
|+++.+......+-|.+=-..|..|=.+--..+.+.....+.-+..+
T Consensus 2061 L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD~ 2107 (3245)
T 3vkg_A 2061 IKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGDV 2107 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhccHHH
Confidence 33444444444555555555666665555555555555555554444
No 28
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=93.43 E-value=0.29 Score=39.88 Aligned_cols=66 Identities=24% Similarity=0.305 Sum_probs=46.0
Q ss_pred hhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHH-------HHHHHHHHhHH
Q 012561 284 LSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQ-------ALTAEVIKHKE 352 (461)
Q Consensus 284 ls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~Qvq-------sL~aE~~~ykE 352 (461)
+.+|++...||..+|+-....-.- +.+.+..-+..|-.+|+++|.|-.+++..-| +|..||++|+-
T Consensus 5 ie~L~~q~~~Le~~l~e~E~~~~~---~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRk 77 (86)
T 1x8y_A 5 LSQLQCQLAAKEAKLRDLEDSLAR---ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRK 77 (86)
T ss_dssp -------CTTHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 567889999999999888776544 4455666677778899999999888877766 56789999986
No 29
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=93.19 E-value=4.7 Score=36.47 Aligned_cols=130 Identities=17% Similarity=0.298 Sum_probs=81.3
Q ss_pred hHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHH
Q 012561 293 SLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIR 372 (461)
Q Consensus 293 SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~ 372 (461)
.|..||.-+ ...-+.--.||.++-++|.+.-+-=+-.-+.+..|..++..- .....+||-.+.--+++-.
T Consensus 4 ~lE~qlkea-------ae~ad~KyeEvaR~E~dLEraEERae~aE~k~~eLEeeL~~v---~~nlKsLE~seekasqrEd 73 (155)
T 2efr_A 4 QLEDKVEEL-------LSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTV---TNNLKSLEAQAEKYSQKED 73 (155)
T ss_dssp HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhccchhhhhHHHHHHH
Confidence 455566655 344444455787777777776655555556666666665443 3456668887777777778
Q ss_pred HHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhhhh----HHhHHhhhhhhhhhcc
Q 012561 373 SLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEG----EKLRKRLHNTILELEV 439 (461)
Q Consensus 373 ~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~kiiEG----EkLRKKLHNTILELKG 439 (461)
.++.|+.....||+-|+ +|.+|.+ +.+.-|+.-+.+.|-.|... ..+...|.+|+.||.|
T Consensus 74 ~yEeqIk~L~~kLKEAE-----~RAE~AE--Rsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~ 137 (155)
T 2efr_A 74 KYEEEIKVLSDKLKEAE-----TRAEFAE--RSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEE 137 (155)
T ss_dssp HHHHHHHHHHHHHHHHH-----HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888888765 4444443 33444444444444444333 2466778889999877
No 30
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=93.16 E-value=1.9 Score=36.67 Aligned_cols=64 Identities=19% Similarity=0.345 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHH
Q 012561 171 IIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEEL-QSANQR 234 (461)
Q Consensus 171 ~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~-~~anqq 234 (461)
.+..+|..+..|+..+...+.+.......+.+|+..|..+|+....+..||+-+..-+ ..||.-
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~M 70 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNM 70 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888899999999999999999999999999999999999999999999887655 234443
No 31
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=92.41 E-value=2.7 Score=35.88 Aligned_cols=85 Identities=29% Similarity=0.368 Sum_probs=58.7
Q ss_pred hhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH--hhhhhhHHHHHHhhH
Q 012561 290 QYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE--LAVSSEDLEARCASQ 367 (461)
Q Consensus 290 ~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE--l~~k~~~LEetCssQ 367 (461)
...||+.-|..-|.||++-+|||+.|.+=+.+||+|= ..|.+.+..+++--.|+-+-=+ -+++ -+||...|--
T Consensus 5 ~La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~----~~R~~~i~el~akidd~Lk~l~~EklAk-ldLE~RLsKt 79 (101)
T 1d7m_A 5 RLAGLENSLESEKVSREQLIKQKDQLNSLLASLESEG----AEREKRLRELEAKLDETLKNLELEKLAR-MELEARLAKT 79 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHcccHHHHHH-HHHHHHHhhh
Confidence 4567888999999999999999999999999999875 5688888888876655544333 1222 2455555444
Q ss_pred HHHHHHHHHHHH
Q 012561 368 SNQIRSLSDQLA 379 (461)
Q Consensus 368 ~eqI~~Lq~QLa 379 (461)
.+--..|+-.|+
T Consensus 80 EKDkAiLELkLa 91 (101)
T 1d7m_A 80 EKDRAILELKLA 91 (101)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 444444444444
No 32
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=91.73 E-value=0.66 Score=38.74 Aligned_cols=68 Identities=16% Similarity=0.177 Sum_probs=48.2
Q ss_pred hhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHH-------HHHHHHHHhHHh
Q 012561 283 NLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQ-------ALTAEVIKHKEL 353 (461)
Q Consensus 283 nls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~Qvq-------sL~aE~~~ykEl 353 (461)
.++.|++.+.+|..+|.-....-...+ ..+..-+..|-.+|+++|.|-.+++.+-+ +|..||++|.-|
T Consensus 13 ~~~~Lq~~~~~LE~~l~e~E~~~~~e~---~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYrkL 87 (95)
T 3mov_A 13 LYFQGQKESRACLERIQELEDLLAKEK---DNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRKL 87 (95)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999998887655544 44555667788899999998887766544 577888898763
No 33
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=90.88 E-value=5.4 Score=36.08 Aligned_cols=106 Identities=17% Similarity=0.206 Sum_probs=73.9
Q ss_pred HHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhH
Q 012561 324 VELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQK 403 (461)
Q Consensus 324 ~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk 403 (461)
..|+...+|=|+....|..+..++..-. +.......+|..|+.+|.++...||.-..+....-.--+...
T Consensus 7 ~qlkeaae~ad~KyeEvaR~E~dLEraE----------ERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yE 76 (155)
T 2efr_A 7 DKVEELLSKNYHLENEVARLKKLLERAE----------ERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYE 76 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHH
Confidence 3444446788888888777666665544 455555556677777777777777665554443333334445
Q ss_pred HHHHHHHHhHHHHhhhhhhhHHhHHhhhhhhhhhcc
Q 012561 404 KLINELRNHLEDAEYKLIEGEKLRKRLHNTILELEV 439 (461)
Q Consensus 404 ~~i~eLq~RLadaE~kiiEGEkLRKKLHNTILELKG 439 (461)
..|..|..+|.+||.+.=.+|.-=.||.-+|-.|..
T Consensus 77 eqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd 112 (155)
T 2efr_A 77 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLED 112 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999988899888877643
No 34
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=89.07 E-value=13 Score=33.81 Aligned_cols=132 Identities=17% Similarity=0.178 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHchH-HHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHH----------H-HHHHHH
Q 012561 142 RLRNALELSEQKCAEMELALRNKE-EELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAR----------E-KETRLN 209 (461)
Q Consensus 142 kL~~~Le~~ek~~~e~E~~lk~k~-eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~k----------E-kEaR~~ 209 (461)
.+.++++..-..|..+-..|.+.+ +.|...+.++++..-.+.+.+.+.+.+...+...+.| | ..|+..
T Consensus 80 ~~~~~~e~~a~~h~~~a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~~~e~e~a~~~ 159 (305)
T 2efl_A 80 SNLNEMNDYAGQHEVISENMASQIIVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQY 159 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555655555554443 5566655555443333333333333333333322221 1 122333
Q ss_pred HHHHHhhh---HHHHHHHHHHHHHHHHHhHhHHHHHHH-HHHHHhH-HHhhhhhhhccHHHHHHHHhhhhhHH
Q 012561 210 MERSHASL---SEDLGKAQEELQSANQRIASINDMYKL-LQEYNSS-LQHYNTKLQKDIDAAHESIKRGEKEK 277 (461)
Q Consensus 210 ~E~~~~~L---seeL~k~q~E~~~anqqi~slqDmyKR-LQEYNTS-LQQYNSkLQaDl~~~~e~~~r~eKEK 277 (461)
.+++.... ..+++|++.....+.+++....+-|+. ++.+|.. -+. ...++..+-+.+..++.+.
T Consensus 160 ~~~~~~~~~~s~~~~eK~~~k~~~~~~~~~~a~~~Y~~~v~~~n~~~~~~----~~~~~~~~~~~lQ~le~~r 228 (305)
T 2efl_A 160 FEKMDADINVTKADVEKARQQAQIRHQMAEDSKADYSSILQKFNHEQHEY----YHTHIPNIFQKIQEMEERR 228 (305)
T ss_dssp HHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHTHHHHHHHHHHHHHHHH
T ss_pred HHHHhccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 33322211 146788887777777766655544432 4444443 222 3455555555555555544
No 35
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=88.47 E-value=11 Score=32.65 Aligned_cols=98 Identities=20% Similarity=0.210 Sum_probs=71.1
Q ss_pred hhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH----hhhhhhHH
Q 012561 285 STLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE----LAVSSEDL 360 (461)
Q Consensus 285 s~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE----l~~k~~~L 360 (461)
..|+..++.|..-++..|.--.. .+......+..|..||.+.|+.++.....+..|.-.+--|.- ...-...|
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~---~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~ 82 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEH---QYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDF 82 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHH
Confidence 34556666666666665554322 445566778888889999999999999888888877766644 55666778
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhhhh
Q 012561 361 EARCASQSNQIRSLSDQLAAAEEKLE 386 (461)
Q Consensus 361 EetCssQ~eqI~~Lq~QLa~A~eKLk 386 (461)
|..+..-.|+.-.|+..|. .++.|+
T Consensus 83 E~k~n~aiErnalLE~El~-EKe~L~ 107 (111)
T 2v66_B 83 EQRLNQAIERNAFLESELD-EKESLL 107 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 8889999999999999987 444444
No 36
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=88.09 E-value=15 Score=33.33 Aligned_cols=128 Identities=19% Similarity=0.257 Sum_probs=80.5
Q ss_pred HhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhh
Q 012561 214 HASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYIS 293 (461)
Q Consensus 214 ~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~S 293 (461)
++.|-++|-.++.++.++..+|..++....++ ..+..+++. ....++.
T Consensus 15 qs~LeD~L~~~R~el~~~~~ri~~lE~~r~~~-------------------------~~l~~~~~~-------~~~e~~~ 62 (154)
T 2ocy_A 15 QSHLEEQLNKSLKTIASQKAAIENYNQLKEDY-------------------------NTLKRELSD-------RDDEVKR 62 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH-------------------------HHHHTHHHH-------HHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHhh-------hhHHHHH
Confidence 56677777777777777766666666543332 222223332 3334455
Q ss_pred HHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH-hhhhhhHHHHHHhhHHHHHH
Q 012561 294 LQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE-LAVSSEDLEARCASQSNQIR 372 (461)
Q Consensus 294 Lq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE-l~~k~~~LEetCssQ~eqI~ 372 (461)
|+..|.-.+....+|=+.+..+-.||+.|=+-|= .+.+..-++-.+-.. +-.|...|++..---...|.
T Consensus 63 L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLF----------eEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~ 132 (154)
T 2ocy_A 63 LREDIAKENELRTKAEEEADKLNKEVEDLTASLF----------DEANNMVADARKEKYAIEILNKRLTEQLREKDTLLD 132 (154)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678888888888888999999999988887662 223322222211111 44466777777777777888
Q ss_pred HHHHHHHHHHh
Q 012561 373 SLSDQLAAAEE 383 (461)
Q Consensus 373 ~Lq~QLa~A~e 383 (461)
+||.||..-+.
T Consensus 133 ~lq~ql~~LK~ 143 (154)
T 2ocy_A 133 TLTLQLKNLKK 143 (154)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888876543
No 37
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=87.17 E-value=9.1 Score=32.63 Aligned_cols=85 Identities=27% Similarity=0.376 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 012561 170 LIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYN 249 (461)
Q Consensus 170 ~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYN 249 (461)
.-|.|||+++.+|+-.|..-.+-|. +++.--.|.|+|-..+- ..+..-|..+..++..+ =+||-.-++||.
T Consensus 36 ~Ei~elrr~iq~L~~el~~l~~~~~-~LE~~l~e~e~~~~~~l--~~~q~~i~~lE~eL~~~------r~e~~~ql~EYq 106 (129)
T 3tnu_B 36 HEISEMNRMIQRLRAEIDNVKKQCA-NLQNAIADAEQRGELAL--KDARNKLAELEEALQKA------KQDMARLLREYQ 106 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhHHHH------HHHHHHHHHHHH
Confidence 3467777777777777766655543 33444445555543321 11222222233333222 146666788886
Q ss_pred hHHHhhhhhhhccHHHH
Q 012561 250 SSLQHYNTKLQKDIDAA 266 (461)
Q Consensus 250 TSLQQYNSkLQaDl~~~ 266 (461)
..-|-|+.=|++.+
T Consensus 107 ---~LlnvKl~Ld~EIa 120 (129)
T 3tnu_B 107 ---ELMNTKLALDVEIA 120 (129)
T ss_dssp ---HHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHH
Confidence 34577766666544
No 38
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=87.09 E-value=13 Score=31.69 Aligned_cols=80 Identities=16% Similarity=0.211 Sum_probs=39.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhh
Q 012561 210 MERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRG 289 (461)
Q Consensus 210 ~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG 289 (461)
.|.....|..+...++..+++-..-+...++++.||+.=..-|..==.-|+.+++...+....+..+|.-+-..++.|+.
T Consensus 39 le~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~ 118 (129)
T 2fxo_A 39 LEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKR 118 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555544443333333334444455555555555555555555554444
No 39
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=86.89 E-value=11 Score=32.14 Aligned_cols=84 Identities=23% Similarity=0.283 Sum_probs=51.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHH
Q 012561 132 LEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNME 211 (461)
Q Consensus 132 lE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E 211 (461)
+...|-.++..|+.+|+......+-++.++.|--. ...++|..|. .|.-.|.++|
T Consensus 14 ~~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~----~~edfk~KyE---------------------~E~~~r~~~E 68 (119)
T 3ol1_A 14 LGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAE----DIMRLREKLQ---------------------EEMLQREEAE 68 (119)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH---------------------HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhH---------------------HHHHHHHHHH
Confidence 45667888889999999988888888877766433 3344554432 2233455555
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHhHhHHH
Q 012561 212 RSHASLSEDLGKAQEELQSANQRIASIND 240 (461)
Q Consensus 212 ~~~~~LseeL~k~q~E~~~anqqi~slqD 240 (461)
..-..|..+++.+..-...+..+|.+|.|
T Consensus 69 ~di~~lrK~lD~~~l~r~dLE~~iesL~e 97 (119)
T 3ol1_A 69 NTLQSFRQDVDNASLARLDLERKVESLQE 97 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence 55556655555555444445555555544
No 40
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=85.56 E-value=22 Score=38.07 Aligned_cols=117 Identities=22% Similarity=0.210 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 012561 168 LNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQE 247 (461)
Q Consensus 168 L~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQE 247 (461)
+...|.+||.++..++..-+.-++--..-++.+++........+..-..+++||++-...++. +
T Consensus 62 ltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKe---k------------- 125 (562)
T 3ghg_A 62 FTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKR---K------------- 125 (562)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHH---H-------------
T ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHH---H-------------
Confidence 334444444444444332222222222333444444344445555566666676665444332 1
Q ss_pred HHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhh----------hhhhhhHHHHHHHh
Q 012561 248 YNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTL----------RGQYISLQEQLSTY 301 (461)
Q Consensus 248 YNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~L----------rG~~~SLq~QL~~s 301 (461)
-|+-|++- ..||+-+..-.-.|+|||.-=++-++.--+= .+.|..+|-||.-.
T Consensus 126 VdnQlsnI-rvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv 188 (562)
T 3ghg_A 126 VIEKVQHI-QLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQV 188 (562)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHH
Confidence 11222222 4678888888888888887766666553321 34577888888654
No 41
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=84.58 E-value=16 Score=30.29 Aligned_cols=90 Identities=20% Similarity=0.124 Sum_probs=70.0
Q ss_pred HhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhh
Q 012561 214 HASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYIS 293 (461)
Q Consensus 214 ~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~S 293 (461)
...|.-|.+.+......+..+++..++-+..+-+=.+|||.=|..|..|++.+
T Consensus 11 m~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~--------------------------- 63 (101)
T 3u1c_A 11 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQV--------------------------- 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---------------------------
Confidence 35566777778888888888888888888888888888888888888888875
Q ss_pred HHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhh
Q 012561 294 LQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRD 331 (461)
Q Consensus 294 Lq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRd 331 (461)
+.+|..++...+++-+.....-.||.+|-.-+|.+=+
T Consensus 64 -ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllEE 100 (101)
T 3u1c_A 64 -LEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVEE 100 (101)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4466666777777877788888888888777776644
No 42
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=83.87 E-value=7.8 Score=31.59 Aligned_cols=76 Identities=16% Similarity=0.212 Sum_probs=51.1
Q ss_pred HHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 012561 269 SIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVI 348 (461)
Q Consensus 269 ~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~ 348 (461)
.+..+..+|+.++--+.++++ .++--|.--++.+..+..+-+++..||.++..+.=-|=..-++|.+|..|+.
T Consensus 8 qi~~l~~e~~~l~~e~dn~~~-------~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~ 80 (86)
T 3swk_A 8 QVDQLTNDKARVEVERDNLAE-------DIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIA 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556665555555444 4555556667777778888888888888887777777777777777777776
Q ss_pred HhH
Q 012561 349 KHK 351 (461)
Q Consensus 349 ~yk 351 (461)
-.|
T Consensus 81 fLk 83 (86)
T 3swk_A 81 FLK 83 (86)
T ss_dssp HHT
T ss_pred HHh
Confidence 443
No 43
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=83.40 E-value=10 Score=32.49 Aligned_cols=85 Identities=27% Similarity=0.339 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 012561 170 LIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYN 249 (461)
Q Consensus 170 ~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYN 249 (461)
.-|.|||+++.+|+-.|..-.+-| ++++.--.|-|+|-..+-. .+..-|..+..++..+ =+||-..++||.
T Consensus 38 ~Ei~elrr~iq~L~~el~~l~~~~-~sLE~~l~e~e~~~~~~l~--~~q~~i~~lE~eL~~~------r~em~~ql~EYq 108 (131)
T 3tnu_A 38 SEISELRRTMQNLEIELQSQLSMK-ASLENSLEETKGRYCMQLA--QIQEMIGSVEEQLAQL------RCEMEQQNQEYK 108 (131)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 346777788888877776655544 3344444455555443221 1222222222222222 246667788886
Q ss_pred hHHHhhhhhhhccHHHH
Q 012561 250 SSLQHYNTKLQKDIDAA 266 (461)
Q Consensus 250 TSLQQYNSkLQaDl~~~ 266 (461)
..-|-|+.=|++.+
T Consensus 109 ---~Ll~vKl~Ld~EIa 122 (131)
T 3tnu_A 109 ---ILLDVKTRLEQEIA 122 (131)
T ss_dssp ---HHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHH
Confidence 34567766666544
No 44
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=83.35 E-value=14 Score=36.45 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=32.8
Q ss_pred ccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHH
Q 012561 261 KDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHE 318 (461)
Q Consensus 261 aDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~E 318 (461)
.|.+...+.+.++.+|++..-.-+. .+..+++.+++..++|+.++..|+.-
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (487)
T 3oja_A 435 RDWDMYQHKETQLAEENARLKKLNG-------EADLALASANATLQELVVREQNLASQ 485 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhhhhhhhhh-------hhhhhhHhcccHHHHHHHHHHHHHHh
Confidence 4444445555555555555444443 44458888999999999988877653
No 45
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=83.24 E-value=8.3 Score=34.45 Aligned_cols=63 Identities=19% Similarity=0.370 Sum_probs=50.4
Q ss_pred HchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 012561 162 RNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEEL 228 (461)
Q Consensus 162 k~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~ 228 (461)
+.++.+++. ++..+..|...|.....+.......+.+|+..|..+|+....+..||+-+..-+
T Consensus 21 ~~~~~~le~----l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasL 83 (135)
T 2e7s_A 21 KAAIENYNQ----LKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 83 (135)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555544 455666777777888888888999999999999999999999999999887654
No 46
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=82.42 E-value=8.9 Score=40.91 Aligned_cols=94 Identities=18% Similarity=0.212 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhh-hHHHHHHHhHhhHHHHHHhhHHHHHH
Q 012561 240 DMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYI-SLQEQLSTYKASQDEAMRQKDALVHE 318 (461)
Q Consensus 240 DmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~-SLq~QL~~skaSq~Ea~kQK~~L~~E 318 (461)
|+-+|+.+-...|-+| ++...|+...-..+...-+++.+-...+.+....|. .|..++...|.-.+.-+.+...|.+=
T Consensus 61 DltkrINELKnqLEdl-sKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsn 139 (562)
T 3ghg_A 61 DFTNRINKLKNSLFEY-QKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKN 139 (562)
T ss_dssp HHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH-HhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444 444444444433343333344444445555666676 88888888888888888888888888
Q ss_pred HHHHHHHHhhhhhhhh
Q 012561 319 VASMRVELQQVRDDRD 334 (461)
Q Consensus 319 v~~LR~ELqqvRdDRD 334 (461)
|..+|.++|++--|=|
T Consensus 140 Ledq~~kIQRLEvDId 155 (562)
T 3ghg_A 140 VRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888887765544
No 47
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=81.18 E-value=16 Score=31.52 Aligned_cols=86 Identities=19% Similarity=0.182 Sum_probs=61.1
Q ss_pred HHHHHhHHHhhHHHHHHhhHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhh
Q 012561 182 LQEKLAKEESDKLAALDSLAREKE-TRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQ 260 (461)
Q Consensus 182 Lqe~L~keeseKl~a~~s~~kEkE-aR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQ 260 (461)
.-.+|.||++ +|.+|.+ ...-+++..+. ..|--.++.....+..=..|+-|+++||+..-..|++|=....
T Consensus 16 ~vkRL~KE~~-------~Y~kE~~~q~~kiekmk~e-~~dey~iKkq~evL~Et~~mipd~~~RL~~a~~~L~~~l~~~~ 87 (116)
T 3mxz_A 16 TCKRIVKELH-------SYEKEVEREAAKTADMKDK-GADPYDLKQQENVLGESRMMIPDCHKRLESALADLKSTLAELE 87 (116)
T ss_dssp HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc
Confidence 3346666653 6777764 55556666653 3455677778888888899999999999999999999754432
Q ss_pred -------ccHHHHHHHHhhhhh
Q 012561 261 -------KDIDAAHESIKRGEK 275 (461)
Q Consensus 261 -------aDl~~~~e~~~r~eK 275 (461)
.++..|.++|+.+++
T Consensus 88 ~~~~~~~ee~~~Ak~~l~~ae~ 109 (116)
T 3mxz_A 88 ETDEKEGPEIEDAKKTVADVEK 109 (116)
T ss_dssp TC-CCCCHHHHHHHHHHHHHHT
T ss_pred ccCCCChHHHHHHHHHHHHHHH
Confidence 256677777766554
No 48
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=80.76 E-value=25 Score=29.79 Aligned_cols=55 Identities=22% Similarity=0.288 Sum_probs=43.2
Q ss_pred hhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 012561 292 ISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIK 349 (461)
Q Consensus 292 ~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ 349 (461)
.-..-||+.++.+|.++.+.|..|.++|..+. +++.++- ..+..+|.+|..|+..
T Consensus 11 aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~--~~~~~k~-~eq~~~le~lk~eL~~ 65 (107)
T 2no2_A 11 AEVTKQVSMARQAQVDLEREKKELEDSLERIS--DQGQRKT-QEQLEVLESLKQELAT 65 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHHHHH
Confidence 44567999999999999999999999998876 4444444 3456788888888776
No 49
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Probab=80.32 E-value=44 Score=32.29 Aligned_cols=43 Identities=16% Similarity=0.287 Sum_probs=29.6
Q ss_pred hhhhhHHhHHHHHHHHHhHHHHhhhhhhhHHhHHhhhhhhhhh
Q 012561 395 TKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILEL 437 (461)
Q Consensus 395 trte~E~Qk~~i~eLq~RLadaE~kiiEGEkLRKKLHNTILEL 437 (461)
-...++.-..++..-..+|.++-.+....|.|++.+|...-++
T Consensus 337 L~~~w~~L~~~~~~R~~~L~~~l~~~~~~~~L~~~F~~~a~~~ 379 (476)
T 1hci_A 337 LRTKWDKVKQLVPIRDQSLQEELARQHANERLRRQFAAQANAI 379 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3445666666777777788887777777777888777655443
No 50
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=78.60 E-value=2.8 Score=43.94 Aligned_cols=80 Identities=23% Similarity=0.294 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHH
Q 012561 199 SLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKS 278 (461)
Q Consensus 199 s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~ 278 (461)
.+.+|+.+|..+|+.+..|.+.|...+.+...++.-+.--+++-.+|.|=-.-.|.==-.|......+.+++.+++.++.
T Consensus 322 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~ 401 (575)
T 2i1j_A 322 KLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKN 401 (575)
T ss_dssp TCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34558999999999999999999999999999988888888877777765555555444555555555555555554433
No 51
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=78.43 E-value=24 Score=28.68 Aligned_cols=42 Identities=19% Similarity=0.272 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHH
Q 012561 199 SLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASIND 240 (461)
Q Consensus 199 s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqD 240 (461)
-|+.|.-.|.++|..-.+|..+++-+..-...+..||.+|.|
T Consensus 36 KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~e 77 (86)
T 3swk_A 36 KLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQE 77 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 467788889999999999999999988888888888888876
No 52
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=78.11 E-value=40 Score=30.58 Aligned_cols=54 Identities=19% Similarity=0.394 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 012561 175 LRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEEL 228 (461)
Q Consensus 175 Lr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~ 228 (461)
++..+..|...+.....+.......+.+|+..|..+|+....+..||+-+..-+
T Consensus 42 ~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasL 95 (154)
T 2ocy_A 42 LKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 95 (154)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566667777888888889999999999999999999999999887654
No 53
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=78.06 E-value=23 Score=30.00 Aligned_cols=85 Identities=15% Similarity=0.304 Sum_probs=58.8
Q ss_pred HHHHHHhHHHhhHHHHHHhhHHHH-HHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhh
Q 012561 181 SLQEKLAKEESDKLAALDSLAREK-ETRLNMERSHASLSE-DLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTK 258 (461)
Q Consensus 181 SLqe~L~keeseKl~a~~s~~kEk-EaR~~~E~~~~~Lse-eL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSk 258 (461)
+.-.+|.||++ +|.+|. +...-+++..+. .. |--.++.....+..=-.|+-|+.+||+..-..|++|=..
T Consensus 11 g~vkRL~KE~~-------~Y~kE~~~q~~riek~k~~-~~~dey~iKkq~evl~Et~~mipd~~~Rl~~a~~~L~~~l~~ 82 (106)
T 1qsd_A 11 KALKRLTKEEG-------YYQQELKDQEAHVAKLKED-KSVDPYDLKKQEEVLDDTKRLLPTLYEKIREFKEDLEQFLKT 82 (106)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 34456777753 677776 444556666654 23 556777778888888899999999999999999998754
Q ss_pred hh--ccHHHHHHHHhhh
Q 012561 259 LQ--KDIDAAHESIKRG 273 (461)
Q Consensus 259 LQ--aDl~~~~e~~~r~ 273 (461)
+. .++..|.+.+..+
T Consensus 83 ~~~~ee~~~Ake~l~~a 99 (106)
T 1qsd_A 83 YQGTEDVSDARSAITSA 99 (106)
T ss_dssp CCSSSCCHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHH
Confidence 44 3455555555443
No 54
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=77.89 E-value=45 Score=31.07 Aligned_cols=133 Identities=15% Similarity=0.158 Sum_probs=73.7
Q ss_pred HHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHH
Q 012561 230 SANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAM 309 (461)
Q Consensus 230 ~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~ 309 (461)
.+.+-...+.++=.=|.||=.|=+.|=.-|.+++..+.-.++.++. .+..|...++..|.-.+..
T Consensus 18 ~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~--------------~~~~L~~E~e~~k~K~~~~- 82 (189)
T 2v71_A 18 LSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQA--------------DNQRLKYEVEALKEKLEHQ- 82 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH-
Confidence 3444555666777778888888888877777777766555444433 3333344444443332211
Q ss_pred HhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH----hhhhhhHHHHHHhhHHHHHHHHHHHHH
Q 012561 310 RQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE----LAVSSEDLEARCASQSNQIRSLSDQLA 379 (461)
Q Consensus 310 kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE----l~~k~~~LEetCssQ~eqI~~Lq~QLa 379 (461)
+......+..|..||.+.|+.++.....+-.|.-.+--+.- .......||....---+++..|+..|.
T Consensus 83 --~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~ 154 (189)
T 2v71_A 83 --YAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD 154 (189)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12223345566666666666666666666655544433332 444444555555555555555555554
No 55
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=77.18 E-value=15 Score=32.87 Aligned_cols=80 Identities=23% Similarity=0.295 Sum_probs=50.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhH
Q 012561 215 ASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISL 294 (461)
Q Consensus 215 ~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SL 294 (461)
..|-++|-.++.++.+...++..++.+-..+.++++- ++.+...+..|
T Consensus 4 s~LEd~L~~~r~~l~~~~~~~~~le~l~~~l~~l~~~--------------------------------l~~~~~e~~~L 51 (135)
T 2e7s_A 4 GSLEEQLNKSLKTIASQKAAIENYNQLKEDYNTLKRE--------------------------------LSDRDDEVKRL 51 (135)
T ss_dssp --CCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------TTTHHHHHHTH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------HhhhHHHHHHH
Confidence 3455566666666666666666555554444443321 12333334556
Q ss_pred HHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHH
Q 012561 295 QEQLSTYKASQDEAMRQKDALVHEVASMRVEL 326 (461)
Q Consensus 295 q~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~EL 326 (461)
+..|.-.++...+|=..+..+-.||+.|=+-|
T Consensus 52 ~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasL 83 (135)
T 2e7s_A 52 REDIAKENELRTKAEEEADKLNKEVEDLTASL 83 (135)
T ss_dssp HHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888888888888888887766
No 56
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=76.37 E-value=45 Score=30.32 Aligned_cols=92 Identities=21% Similarity=0.277 Sum_probs=63.9
Q ss_pred HHHHHHHHHHh-------hhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhc
Q 012561 317 HEVASMRVELQ-------QVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSD 389 (461)
Q Consensus 317 ~Ev~~LR~ELq-------qvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aD 389 (461)
+|+..||+|+- .+-.+=.|...|-+.-+-++.+..||-+...+=..-.-+-.+.|-.|++.|. .+|||+.
T Consensus 60 KEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQSlDiRKLrELEADLKEKDsMVe~LT~TiG~LrKELE--dEklK~~- 136 (167)
T 4gkw_A 60 KEIGKLRAELGTAQRNLEKADQLLKRNSQQQNQQSLDMRKLGELEADLKEKDSMVESLTETIGILRKELE--NEKLKAA- 136 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHhHhhhhHHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHH--HHHHHHH-
Confidence 45666666543 2223333334455555668889998777666555556667788999999986 4666654
Q ss_pred hhhhhhhhhhHHhHHHHHHHHHhHHH
Q 012561 390 LSALETKTEFEGQKKLINELRNHLED 415 (461)
Q Consensus 390 lsa~etrte~E~Qk~~i~eLq~RLad 415 (461)
|+|+-||.-|.--+.+.+||+-
T Consensus 137 ----E~MdSFE~LkvENE~vkerl~m 158 (167)
T 4gkw_A 137 ----ENMDSFEKLSMENENLKEKIAH 158 (167)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHhhhhHhHHHHHHH
Confidence 7889999999988999999985
No 57
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=76.32 E-value=1.7 Score=45.81 Aligned_cols=32 Identities=13% Similarity=0.066 Sum_probs=21.8
Q ss_pred hhhhhhhH----HhHHhhhhhhhhhcccceeeeeec
Q 012561 417 EYKLIEGE----KLRKRLHNTILELEVNLSSSALFR 448 (461)
Q Consensus 417 E~kiiEGE----kLRKKLHNTILELKGNIRv~crvr 448 (461)
=.+++.|+ .-=++.-..|-.+.+++|||||||
T Consensus 348 l~~vl~G~~tpeeAL~~Aq~~~~~il~~~rV~~~~~ 383 (715)
T 4h1g_A 348 VINAASGRQTVDAALAAAQTNAAALKGNIRVFCRIR 383 (715)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHSSSSCSEEEEEEEC
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHhcCeEEEEEe
Confidence 33455553 233445556678999999999999
No 58
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=76.18 E-value=35 Score=31.74 Aligned_cols=35 Identities=17% Similarity=0.353 Sum_probs=24.5
Q ss_pred HHHHHHH-HhHH-HhhhhhhhccHHHHHHHHhhhhhH
Q 012561 242 YKLLQEY-NSSL-QHYNTKLQKDIDAAHESIKRGEKE 276 (461)
Q Consensus 242 yKRLQEY-NTSL-QQYNSkLQaDl~~~~e~~~r~eKE 276 (461)
...++.| ++.| ||||..++--++........++..
T Consensus 27 ~~~~~~~~~s~l~~ql~~~~~d~~~~l~~~~~~l~~~ 63 (243)
T 2a01_A 27 RDYVSQFEGSALGKQLNLKLLDNWDSVTSTFSKLREQ 63 (243)
T ss_dssp HHHHHHHHHHHHHCSSCCSSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4667777 7888 888888877777766665555443
No 59
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=75.89 E-value=33 Score=28.43 Aligned_cols=30 Identities=17% Similarity=0.305 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhhhhhhchhhhhhhhhhHH
Q 012561 372 RSLSDQLAAAEEKLEVSDLSALETKTEFEG 401 (461)
Q Consensus 372 ~~Lq~QLa~A~eKLk~aDlsa~etrte~E~ 401 (461)
..++.+|..|+.||.-++-.+.++=.+...
T Consensus 61 d~~ee~L~ea~~kLee~ek~~~~aE~ev~~ 90 (101)
T 3u1c_A 61 DQVLEELHKSEDSLLFAEENAAKAESEVAS 90 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555444444433333333
No 60
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=73.37 E-value=28 Score=28.22 Aligned_cols=39 Identities=10% Similarity=0.178 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhH
Q 012561 313 DALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHK 351 (461)
Q Consensus 313 ~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~yk 351 (461)
+.+.++...++.+|..+++++...-+++..+...+..|.
T Consensus 6 ~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~ 44 (112)
T 1l8d_A 6 EELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELK 44 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344456666677777777777776667776666665554
No 61
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=72.92 E-value=38 Score=27.81 Aligned_cols=90 Identities=20% Similarity=0.214 Sum_probs=64.6
Q ss_pred HhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhh
Q 012561 214 HASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYIS 293 (461)
Q Consensus 214 ~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~S 293 (461)
...|.-|.+.+......+..+++..++-+..+-+=.+|||.=+..|+.|++.+
T Consensus 11 m~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~--------------------------- 63 (101)
T 3u59_A 11 MQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKY--------------------------- 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---------------------------
Confidence 34566677777777777777788777777777777778887777777777764
Q ss_pred HHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhh
Q 012561 294 LQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRD 331 (461)
Q Consensus 294 Lq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRd 331 (461)
+++|..+....+++-+.....-.||.+|-.-||.|=+
T Consensus 64 -~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllEE 100 (101)
T 3u59_A 64 -SESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVEE 100 (101)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3455555566666777777777788888777777644
No 62
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=72.02 E-value=73 Score=31.93 Aligned_cols=65 Identities=22% Similarity=0.378 Sum_probs=43.5
Q ss_pred hhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhH----HHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Q 012561 274 EKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKD----ALVHEVASMRVELQQVRDDRDHQLSQVQA 342 (461)
Q Consensus 274 eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~----~L~~Ev~~LR~ELqqvRdDRDr~~~Qvqs 342 (461)
.+|+..|++|-..|+....++.+ ++.-+++.++++. .+-.++.+|+-||.|.|--||+++..+..
T Consensus 197 ~~e~~~~~~n~~~l~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~rd~~~~~L~~ 265 (373)
T 3hhm_B 197 EKEIQRIMHNYDKLKSRISEIID----SRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTRDQYLMWLTQ 265 (373)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------
T ss_pred hHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHH
Confidence 46888899999888887776544 3444445555433 46678889999999999999999866443
No 63
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=71.99 E-value=28 Score=34.04 Aligned_cols=110 Identities=24% Similarity=0.410 Sum_probs=67.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHH----HhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhh
Q 012561 215 ASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSL----QHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQ 290 (461)
Q Consensus 215 ~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSL----QQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~ 290 (461)
+.|.++..++..|++--.+-+.......|-..|=-... ..|+-+.+..+. ..|+..|.+|-..|+.+
T Consensus 35 ~~~~~~~~~~~~~~~~k~~a~~af~~~~~~f~~q~~~qe~~~~~~~~~~~~~~~---------~~e~~~~~~n~e~l~~r 105 (302)
T 2y3a_B 35 DQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKCSKEYLERFRREGN---------EKEMQRILLNSERLKSR 105 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC------CT---------TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCC---------HHHHHHHHHhHHHHHHH
Confidence 45666666666666644444444444444333322111 124444444333 37899999999999999
Q ss_pred hhhHHHHHHHhHhhHHHHHHhhHHHHHHH----HHHHHHHhhhhhhhhhhH
Q 012561 291 YISLQEQLSTYKASQDEAMRQKDALVHEV----ASMRVELQQVRDDRDHQL 337 (461)
Q Consensus 291 ~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev----~~LR~ELqqvRdDRDr~~ 337 (461)
+.+|-+. ++..++.+..++.-.-+| ..+..|+-++|.-||+..
T Consensus 106 l~aL~~~----~~~~~~eLsf~kgd~~~ier~ln~~~pdw~~l~k~rd~~~ 152 (302)
T 2y3a_B 106 IAEIHES----RTKLEQDLRAQASDNREIDKRMNSLKPDLMQLRKIRDQYL 152 (302)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCC
T ss_pred HHHHHhh----hhcchhhhhhhhhHHHhHHhhhccCChHHHHHhhcccchh
Confidence 8888774 456666666665544444 789999999999999764
No 64
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=71.94 E-value=34 Score=29.80 Aligned_cols=51 Identities=20% Similarity=0.172 Sum_probs=35.4
Q ss_pred hhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH
Q 012561 291 YISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE 352 (461)
Q Consensus 291 ~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE 352 (461)
++-|+.+|+.+--...+...+-+.|..|+..++.+| -+|+-|.+-+.-|++
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~l-----------E~I~vLkaQv~IY~~ 76 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM-----------ETVPVLKAQADIYKA 76 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 566777888777766666666666666665555544 457888888888887
No 65
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=71.58 E-value=34 Score=28.17 Aligned_cols=79 Identities=15% Similarity=0.290 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHh---HHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhH
Q 012561 237 SINDMYKLLQEYNS---SLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKD 313 (461)
Q Consensus 237 slqDmyKRLQEYNT---SLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~ 313 (461)
.++++|.||--|.- +|-|=|..|.+++..... +.. ++ -..
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~------~~~-------~~------------------------~~~ 52 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKILLAELEQLKG------QGK-------SR------------------------LGD 52 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH-------HH------------------------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------ccC-------CC------------------------cHH
Confidence 46778888888874 777888888766543321 000 11 122
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH
Q 012561 314 ALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE 352 (461)
Q Consensus 314 ~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE 352 (461)
..-.++..||..|..+.-|+.+...++..|.+++..||.
T Consensus 53 ~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 53 LYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667777777777777777777777777777777764
No 66
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=71.55 E-value=1.1e+02 Score=32.55 Aligned_cols=95 Identities=14% Similarity=0.141 Sum_probs=56.0
Q ss_pred HHHHHH-HhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhh---hchhhhhhhhhhHHhHHHHHHHHHhHHHHhh
Q 012561 343 LTAEVI-KHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEV---SDLSALETKTEFEGQKKLINELRNHLEDAEY 418 (461)
Q Consensus 343 L~aE~~-~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~---aDlsa~etrte~E~Qk~~i~eLq~RLadaE~ 418 (461)
+..|+. +|.. -.+.++.+...|..-|+.++. ++..+.. .+-+. .+-+..-..+..-=....|.--
T Consensus 606 f~~eL~k~~~~---~~~~i~~~~~~Q~~ll~~i~~----~~~~f~~~~~~~~~~----~~re~~~~~l~~ay~~y~el~~ 674 (704)
T 2xs1_A 606 SVTELDRVYGG---LTTKVQESLKKQEGLLKNIQV----SHQEFSKMKQSNNEA----NLREEVLKNLATAYDNFVELVA 674 (704)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHSCCCHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhccchhH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 445665 3666 455677888888877766654 4444321 12111 1111111112222233444455
Q ss_pred hhhhhHHhHHhhhhhhhhhcccceeeeeec
Q 012561 419 KLIEGEKLRKRLHNTILELEVNLSSSALFR 448 (461)
Q Consensus 419 kiiEGEkLRKKLHNTILELKGNIRv~crvr 448 (461)
.|-+|-+.=..|...+..++.+|.-||.-|
T Consensus 675 ~l~eG~~FY~~L~~~~~~~~~~~~df~~~R 704 (704)
T 2xs1_A 675 NLKEGTKFYNELTEILVRFQNKCSDIVFAR 704 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 677799999999999999999999988644
No 67
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=70.78 E-value=43 Score=27.50 Aligned_cols=85 Identities=9% Similarity=0.229 Sum_probs=41.3
Q ss_pred HhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHH
Q 012561 326 LQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKL 405 (461)
Q Consensus 326 LqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~ 405 (461)
+|..+.+-|.....+..+.+++-...+ +...+|+.-.+-+..|..|+.+|..+++.|.-+.-..-++......=-.-
T Consensus 11 m~~lk~e~e~a~d~ae~~e~~~k~~e~---~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~e 87 (101)
T 3u59_A 11 MQMLKLDKENAIDRAEQAEADKKQAED---RCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAE 87 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555444333 44445555555555666666666655555554433333322222222233
Q ss_pred HHHHHHhH
Q 012561 406 INELRNHL 413 (461)
Q Consensus 406 i~eLq~RL 413 (461)
+..|..|+
T Consensus 88 vasLnRri 95 (101)
T 3u59_A 88 VASLNRRI 95 (101)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44555554
No 68
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=70.70 E-value=41 Score=30.52 Aligned_cols=109 Identities=16% Similarity=0.177 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhh-hhHHHHHHHhhhhhhhhhhhHHHHHHHhH----h-hHHHHHHhh
Q 012561 239 NDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRG-EKEKSAIVENLSTLRGQYISLQEQLSTYK----A-SQDEAMRQK 312 (461)
Q Consensus 239 qDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~-eKEK~tivEnls~LrG~~~SLq~QL~~sk----a-Sq~Ea~kQK 312 (461)
+.+-.++-.|=+.+++|=.+++.-+.. +.+ +.-+..|-+++..|+.....|+.||.=.. + -..+.-.-+
T Consensus 27 e~v~~~~~~y~~~l~~~a~~~~eqL~~-----s~l~~el~~l~~e~~~~l~~~~~~l~~qL~P~~~e~~~~l~~~~e~lr 101 (191)
T 1nfn_A 27 ELALGRFWDYLRWVQTLSEQVQEELLS-----SQVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQ 101 (191)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHTS-----SHHHHHHHHHHHHHHHHHHHHHHHHTTC----------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-----ChHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 334445555555555544444433300 233 22244556666666665566666654221 1 112222334
Q ss_pred HHHHHHHHHHHHHHhhhhhh-hhhhHHHHHHHHHHHHHhHH
Q 012561 313 DALVHEVASMRVELQQVRDD-RDHQLSQVQALTAEVIKHKE 352 (461)
Q Consensus 313 ~~L~~Ev~~LR~ELqqvRdD-RDr~~~QvqsL~aE~~~ykE 352 (461)
..+..+++-||.-|...+++ |++--..+..+...+.-|-+
T Consensus 102 ~~l~kdlEelr~kL~P~~eEL~~~l~~~~Eelr~~L~Py~e 142 (191)
T 1nfn_A 102 ARLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLR 142 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 45667777777777777664 44444455666666666665
No 69
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=70.07 E-value=18 Score=32.50 Aligned_cols=83 Identities=17% Similarity=0.308 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHhHh-------HHHHHHHHH-HHHhHHHhhhhhhh---ccHHHHHHHHhhhhhHHHHHHHhhhh
Q 012561 218 SEDLGKAQEELQSANQRIAS-------INDMYKLLQ-EYNSSLQHYNTKLQ---KDIDAAHESIKRGEKEKSAIVENLST 286 (461)
Q Consensus 218 seeL~k~q~E~~~anqqi~s-------lqDmyKRLQ-EYNTSLQQYNSkLQ---aDl~~~~e~~~r~eKEK~tivEnls~ 286 (461)
.+||+.++..+..|.+.+.+ ..++-.-|| -|.--.|+||-+=| ..+..|.+.+.|+.|-.++++.++--
T Consensus 5 ~~Ele~lr~aL~~AE~eLe~~~~~w~~p~~Lq~wLq~T~E~E~q~~~~kk~~Aekql~~Ake~~eKlkKKrsSv~gs~~~ 84 (136)
T 3ter_A 5 HTEMENLRVQLEEAERRLEANSNGSQAPLALQPLLRRTCENEMAFLEKQRQDCFKEMKEAIEMVDRLQKKQGSVLSSLKL 84 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHC-----CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHhHHHHHHHHHccccHHHHHHHHHHHHHHHHHhhhchheeeee
Confidence 46888888888888887765 222333343 48888999998754 35788999999999999999998887
Q ss_pred hhhhhhhHHHHHHHh
Q 012561 287 LRGQYISLQEQLSTY 301 (461)
Q Consensus 287 LrG~~~SLq~QL~~s 301 (461)
.-|-..|| |++|..
T Consensus 85 aHs~~ssl-D~vD~~ 98 (136)
T 3ter_A 85 ATGAASTS-DQVDSK 98 (136)
T ss_dssp CCSSCCHH-HHHHHH
T ss_pred ecCCCCch-HHHHHH
Confidence 77744555 666654
No 70
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=70.00 E-value=54 Score=28.40 Aligned_cols=91 Identities=18% Similarity=0.200 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhH
Q 012561 139 EHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLS 218 (461)
Q Consensus 139 EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~Ls 218 (461)
+...|+.+|+....-..++|..+..+-|+-..-+.+|+.++.--+--| .+.+.++...+....
T Consensus 14 ~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L-----------------~~Lqq~fsq~q~~vq 76 (112)
T 1x79_B 14 MLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILL-----------------EELQQGLSQAKRDVQ 76 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHH
Confidence 456788888888888889988888888888877777776665444333 245667777788888
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHH
Q 012561 219 EDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQ 253 (461)
Q Consensus 219 eeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQ 253 (461)
+.|.++..+..+.+.++. |||.=|-+|+
T Consensus 77 ~qL~~Lt~~Re~V~~eL~-------rLQ~eNd~L~ 104 (112)
T 1x79_B 77 EQMAVLMQSREQVSEELV-------RLQKDNDSLQ 104 (112)
T ss_dssp HHHHHHHHHHHHHHTC-------------------
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHhhccchh
Confidence 888877777777666654 5555555554
No 71
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=69.95 E-value=28 Score=28.73 Aligned_cols=72 Identities=21% Similarity=0.212 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhh
Q 012561 219 EDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQ 290 (461)
Q Consensus 219 eeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~ 290 (461)
+=|+++..-++.|-+.|+.++-=+.-|.+=|++|.+=|.-+++.-+.-...+.++.-|.+..-+-|.+|=|.
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446777778888888888888888889999999999999988888888889999999999999999988885
No 72
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=69.90 E-value=29 Score=30.42 Aligned_cols=66 Identities=15% Similarity=0.142 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHH
Q 012561 200 LAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDA 265 (461)
Q Consensus 200 ~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~ 265 (461)
|-+-++.-...+.....+..++..+++++.++.-++..+..-+..|++=|..||.=+.+|++.+..
T Consensus 70 l~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 70 YFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455555556666777778888888888888888888888888888888888888766543
No 73
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=69.16 E-value=44 Score=27.47 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHc
Q 012561 136 YAFEHERLRNALELSEQKCAEMELALRN 163 (461)
Q Consensus 136 y~~EqekL~~~Le~~ek~~~e~E~~lk~ 163 (461)
|-.++..|+.+|+......+.++.++.+
T Consensus 54 ye~~i~~Lr~~i~~~~~ek~~l~~e~dn 81 (93)
T 3s4r_A 54 YEEEMRELRRQVDQLTNDKARVEVERDN 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444433
No 74
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=67.52 E-value=43 Score=26.49 Aligned_cols=64 Identities=13% Similarity=0.197 Sum_probs=35.7
Q ss_pred hhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH
Q 012561 283 NLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAE 346 (461)
Q Consensus 283 nls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE 346 (461)
-|..|+-.....++++..+..-..++-+....+-.||.+|---++++-+|-|+.-.++......
T Consensus 7 Km~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~k 70 (81)
T 1ic2_A 7 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEK 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555555555556666666666666666666655555544444433
No 75
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=67.44 E-value=20 Score=31.13 Aligned_cols=59 Identities=19% Similarity=0.365 Sum_probs=36.2
Q ss_pred cHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhh
Q 012561 262 DIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVR 330 (461)
Q Consensus 262 Dl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvR 330 (461)
+++.....+.++--|-..+| ..|+|+.+.|+.+|+-.+.. +..+..|.+.||.|+...+
T Consensus 23 eie~lk~ele~l~~E~q~~v---~ql~~~i~~Le~eL~e~r~~-------~q~a~~e~e~Lr~e~~~l~ 81 (120)
T 3i00_A 23 EISGLKAQLENMKTESQRVV---LQLKGHVSELEADLAEQQHL-------RQQAADDCEFLRAELDELR 81 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 33333444444434444444 45788888888888877644 5556667777777777543
No 76
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=66.27 E-value=39 Score=28.58 Aligned_cols=70 Identities=16% Similarity=0.165 Sum_probs=49.3
Q ss_pred HHHHHHHhHHHhhHHHHHHhhHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhh
Q 012561 180 ASLQEKLAKEESDKLAALDSLAREK-ETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNT 257 (461)
Q Consensus 180 ~SLqe~L~keeseKl~a~~s~~kEk-EaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNS 257 (461)
++.-.+|.||++ +|.+|. +...-+++..+. ..|--.++.....+..=-.|+-|+.+||+..-..|++|=.
T Consensus 13 t~~vkRL~KE~~-------~Y~kE~~~q~~riek~k~e-~~Dey~iKkq~evl~Et~~mipd~~~Rl~~a~~~L~~~l~ 83 (108)
T 1h7c_A 13 TGVVRRLVKERV-------MYEKEAKQQEEKIEKMRAE-DGENYDIKKQAEILQESRMMIPDCQRRLEAAYLDLQRILE 83 (108)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH-HCSCTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 344456777753 677776 344455665544 3344466677777778888999999999999999999864
No 77
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=65.71 E-value=83 Score=28.90 Aligned_cols=62 Identities=23% Similarity=0.367 Sum_probs=44.2
Q ss_pred hHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhH----HHHHHHHHHHHHHhhhhhhhhhhHHHH
Q 012561 275 KEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKD----ALVHEVASMRVELQQVRDDRDHQLSQV 340 (461)
Q Consensus 275 KEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~----~L~~Ev~~LR~ELqqvRdDRDr~~~Qv 340 (461)
+|+..|.+|---|+.+..+|.+ ++.-.++.++... .|-.++.+|+-||.|.+--||+++.-+
T Consensus 89 ~E~~~l~~N~e~LksRL~~l~~----sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl~wL 154 (170)
T 3l4q_C 89 KEMQRILLNSERLKSRIAEIHE----SRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLVWL 154 (170)
T ss_dssp SSTTTTTHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 3777788888888887766543 3333344444332 467888999999999999999998543
No 78
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=65.38 E-value=18 Score=30.88 Aligned_cols=52 Identities=19% Similarity=0.260 Sum_probs=40.6
Q ss_pred hhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHH
Q 012561 273 GEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRV 324 (461)
Q Consensus 273 ~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ 324 (461)
.++||.++++.....-+....|+.++...+...++...-..++..+..+|..
T Consensus 2 ~~~e~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~ 53 (125)
T 1joc_A 2 NQDERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQI 53 (125)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 3689999999999998888899999888888888777666666666555544
No 79
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=65.31 E-value=86 Score=30.67 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=17.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhh
Q 012561 359 DLEARCASQSNQIRSLSDQLAAAEEKLE 386 (461)
Q Consensus 359 ~LEetCssQ~eqI~~Lq~QLa~A~eKLk 386 (461)
+||..-|-+..+|+.|+-+...-+++|+
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (471)
T 3mq9_A 433 SLDAEKAQGQKKVEELEGEITTLNHKLQ 460 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666666655
No 80
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=65.27 E-value=12 Score=28.45 Aligned_cols=38 Identities=16% Similarity=0.182 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHH-------HHHHHHHHhHH
Q 012561 315 LVHEVASMRVELQQVRDDRDHQLSQVQ-------ALTAEVIKHKE 352 (461)
Q Consensus 315 L~~Ev~~LR~ELqqvRdDRDr~~~Qvq-------sL~aE~~~ykE 352 (461)
+..-+..|-.+|+++|.|-.+++.+-| +|..||++|+-
T Consensus 5 ~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRk 49 (59)
T 1gk6_A 5 LEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRK 49 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 445566777888888888887776666 67788999985
No 81
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=65.14 E-value=16 Score=30.27 Aligned_cols=56 Identities=13% Similarity=0.258 Sum_probs=40.7
Q ss_pred hHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhH
Q 012561 275 KEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQL 337 (461)
Q Consensus 275 KEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~ 337 (461)
+-|..|.|-|+-+|+-+.+++-+| .|+-++-.+|..|+..|+.++...|.+-++.+
T Consensus 24 qAKQ~i~EELs~vr~~ni~~eskL-------~eae~rn~eL~~e~~~l~~~~eelq~~~~~~~ 79 (81)
T 1wt6_A 24 LTRQSLSREMEAIRTDNQNFASQL-------REAEARNRDLEAHVRQLQERMELLQAEGATAV 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHccchhhc
Confidence 458889999999999777777544 46777888899999999999988877765543
No 82
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=62.78 E-value=11 Score=28.74 Aligned_cols=32 Identities=28% Similarity=0.547 Sum_probs=26.7
Q ss_pred HHHhHH----hhhhhhHHHHHHhhHHHHHHHHHHHH
Q 012561 347 VIKHKE----LAVSSEDLEARCASQSNQIRSLSDQL 378 (461)
Q Consensus 347 ~~~ykE----l~~k~~~LEetCssQ~eqI~~Lq~QL 378 (461)
+-+||+ |..|+.+||+.|+-....|..|+.=|
T Consensus 6 l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LL 41 (48)
T 3vmx_A 6 ILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLL 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 556777 89999999999999998888887543
No 83
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=62.60 E-value=42 Score=29.85 Aligned_cols=73 Identities=12% Similarity=0.272 Sum_probs=36.6
Q ss_pred HHHhhhhhhhhhhhHHHHHHHh----HhhHHH-HHHhhHHHHHHHHHHHHHHhhhhhh-hhhhHHHHHHHHHHHHHhHH
Q 012561 280 IVENLSTLRGQYISLQEQLSTY----KASQDE-AMRQKDALVHEVASMRVELQQVRDD-RDHQLSQVQALTAEVIKHKE 352 (461)
Q Consensus 280 ivEnls~LrG~~~SLq~QL~~s----kaSq~E-a~kQK~~L~~Ev~~LR~ELqqvRdD-RDr~~~QvqsL~aE~~~ykE 352 (461)
|-+++..|......|+.+|.-. +..... .-.-+..|..+++-+|..|.-.+++ +.+.-..+..|...+.-|-+
T Consensus 47 l~e~~~~l~~~~~~l~~~l~p~~~e~~~~l~~~~~~Lr~~l~kdlee~r~~l~P~~~e~~~~~~~~~e~lr~~l~Py~~ 125 (185)
T 3r2p_A 47 LLDNWDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRA 125 (185)
T ss_dssp CCTTCSCSSCHHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3355555555555666665432 111111 1123455666666666666554443 44444556666666666655
No 84
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=62.03 E-value=1.4e+02 Score=30.12 Aligned_cols=60 Identities=18% Similarity=0.381 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHH-HHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHH
Q 012561 218 SEDLGKAQEELQSANQRIASINDMYK-LLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIV 281 (461)
Q Consensus 218 seeL~k~q~E~~~anqqi~slqDmyK-RLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tiv 281 (461)
..+++|++.....+.+++....+-|+ -++.||..-+.|. .++..+-+.+..++.+....+
T Consensus 184 ~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~y~----~~~~~~~~~lQ~lEeeRi~~l 244 (486)
T 3haj_A 184 PEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYM----ENMEQVFEQCQQFEEKRLRFF 244 (486)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999988888876665 4677777655554 555666666777766654444
No 85
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=61.76 E-value=15 Score=30.15 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=18.6
Q ss_pred HHHHHHHHH-HHHHHhhhhhhhh
Q 012561 313 DALVHEVAS-MRVELQQVRDDRD 334 (461)
Q Consensus 313 ~~L~~Ev~~-LR~ELqqvRdDRD 334 (461)
..-..++.. |+.+|+++.||||
T Consensus 75 r~Yk~dl~~~lk~~lk~l~d~~d 97 (97)
T 3onj_A 75 REWKKTIQSDIKRPLQSLVDSGD 97 (97)
T ss_dssp HHHHHHHHHHTHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHhhhcCC
Confidence 345578999 9999999999997
No 86
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=60.77 E-value=39 Score=29.08 Aligned_cols=80 Identities=20% Similarity=0.249 Sum_probs=47.3
Q ss_pred CcccccHHHHHHHHhhhhhccCCCChHHhhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 012561 83 GTIEFTREDVEALLSEKMRYKNKFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALR 162 (461)
Q Consensus 83 ~~ieFtredVeALLnEKmk~k~KfdyKgr~EqM~dyIKrLr~CIrWfqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk 162 (461)
|-=.||.+||+.|..=+.-..--|..++ |+ ..+.++. .....|.+....+.
T Consensus 51 g~R~Y~~~dl~~l~~I~~lr~~G~sL~e--------Ik---~~l~~~~------------------~~~~~~~~~~~~l~ 101 (148)
T 3gpv_A 51 GDRIFNEEALKYLEMILCLKNTGMPIQK--------IK---QFIDWSM------------------EGDSTILHRLKLMK 101 (148)
T ss_dssp CCEEBCHHHHHHHHHHHHHHTTTCCHHH--------HH---HHHHHHH------------------HCGGGHHHHHHHHH
T ss_pred CCeecCHHHHHHHHHHHHHHHcCCCHHH--------HH---HHHHhhh------------------cCCCCHHHHHHHHH
Confidence 4456999999988655444344454332 11 1122221 11233555556677
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 012561 163 NKEEELNLIIVELRKSFASLQEKLAKEES 191 (461)
Q Consensus 163 ~k~eEL~~~i~ELr~~~~SLqe~L~kees 191 (461)
.+.++|...|.+|++..+.|+.++..-+.
T Consensus 102 ~~~~~l~~~i~~L~~~~~~L~~~i~~~~~ 130 (148)
T 3gpv_A 102 QQEANVLQLIQDTEKNLKKIQQKIAKYED 130 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888888888877765443
No 87
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=60.07 E-value=1.2e+02 Score=29.15 Aligned_cols=85 Identities=24% Similarity=0.291 Sum_probs=52.9
Q ss_pred hhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHH
Q 012561 283 NLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEA 362 (461)
Q Consensus 283 nls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEe 362 (461)
-++.|=++...++++++..= -+--.-.+.|-.--..||..|+.|+.-..+++.| +||+
T Consensus 70 klgvLl~e~ge~e~~~a~~~-------d~yR~~LK~IR~~E~svqp~R~~R~~l~~~I~kL-----k~k~---------- 127 (234)
T 3plt_A 70 KLGVLIYELGELQDQFIDKY-------DQYRVTLKSIRNIEASVQPSRDRKEKITDEIAHL-----KYKD---------- 127 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-----hccC----------
Confidence 34555555556666654321 1222233444444467899999999998888876 3554
Q ss_pred HHhhHHHHHHHHHHHHHHHHhhhhhhchhh
Q 012561 363 RCASQSNQIRSLSDQLAAAEEKLEVSDLSA 392 (461)
Q Consensus 363 tCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa 392 (461)
.++..|..|+++|..|+.-..|++...
T Consensus 128 ---P~s~kl~~LeqELvraEae~lvaEAqL 154 (234)
T 3plt_A 128 ---PQSTKIPVLEQELVRAEAESLVAEAQL 154 (234)
T ss_dssp ---TTCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCchHHHHHHHHHHHHHHhhHHHHHH
Confidence 234578889998888777666664433
No 88
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=59.78 E-value=42 Score=28.91 Aligned_cols=79 Identities=27% Similarity=0.277 Sum_probs=62.3
Q ss_pred HHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhhhhHHh
Q 012561 348 IKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKL 426 (461)
Q Consensus 348 ~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~kiiEGEkL 426 (461)
.+|+..|+-..-|---=|+..=||.+|.+.|.--++=+--.--..-|...+++-+|+.+..|+..++...-+|-+-+.|
T Consensus 9 EKyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD~L 87 (103)
T 4h22_A 9 EKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQREEM 87 (103)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677778877778777777777888888888877777666666677888899999999999999999877777665543
No 89
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=58.64 E-value=21 Score=28.59 Aligned_cols=40 Identities=25% Similarity=0.305 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHHH-------HHHHHHHHhHH
Q 012561 313 DALVHEVASMRVELQQVRDDRDHQLSQVQ-------ALTAEVIKHKE 352 (461)
Q Consensus 313 ~~L~~Ev~~LR~ELqqvRdDRDr~~~Qvq-------sL~aE~~~ykE 352 (461)
+.+..-|..|-.+|+++|.|-.+|+.+-| +|..||++|+-
T Consensus 8 ~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRk 54 (74)
T 2xv5_A 8 DTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRK 54 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556666777777777777766655 67789999986
No 90
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=57.44 E-value=35 Score=34.84 Aligned_cols=73 Identities=15% Similarity=0.215 Sum_probs=41.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHH-HHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHH
Q 012561 306 DEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQ-VQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAA 381 (461)
Q Consensus 306 ~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~Q-vqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A 381 (461)
+..+++-..+..+|..|..-||..--.+..+... .... ..+.+.+..+...||.....+..+|+.|+.+|...
T Consensus 44 E~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~---tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~ 117 (409)
T 1m1j_C 44 EGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQL---TQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMN 117 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHH---HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhH---HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhh
Confidence 3344455555555555555555542222111111 1111 22444566677788889999999999999988753
No 91
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=56.61 E-value=83 Score=25.96 Aligned_cols=47 Identities=2% Similarity=0.249 Sum_probs=31.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH
Q 012561 306 DEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE 352 (461)
Q Consensus 306 ~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE 352 (461)
.+.-+++..+..|+..++.|+.+....-.+....-+++.-.+.-+-+
T Consensus 28 ~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~d 74 (96)
T 3q8t_A 28 EDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDD 74 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677777777777777777777666666666666665555554
No 92
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=56.57 E-value=32 Score=27.77 Aligned_cols=47 Identities=17% Similarity=0.290 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHH
Q 012561 138 FEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQE 184 (461)
Q Consensus 138 ~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe 184 (461)
.|.+.|+++..+.+...+++|.......+.++.+|..|...++.+..
T Consensus 3 ~eie~L~~q~~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~ 49 (86)
T 1x8y_A 3 CQLSQLQCQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRA 49 (86)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888888887777777777776555554433
No 93
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=55.53 E-value=1.1e+02 Score=26.86 Aligned_cols=98 Identities=16% Similarity=0.273 Sum_probs=59.9
Q ss_pred HHHHHHHhhhhhc-cCCCChHHhhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHH---HHHHchH
Q 012561 90 EDVEALLSEKMRY-KNKFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEME---LALRNKE 165 (461)
Q Consensus 90 edVeALLnEKmk~-k~KfdyKgr~EqM~dyIKrLr~CIrWfqelE~~y~~EqekL~~~Le~~ek~~~e~E---~~lk~k~ 165 (461)
-.|-++|+.||+. +..=.|+.=.....-.+--|-+|=-+|+-.+. .+.|...++..++...++= ..+..++
T Consensus 31 ~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k~~~~-----~~~L~~~l~~~~kE~~~lK~el~~~~~k~ 105 (138)
T 3hnw_A 31 QRVASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYFKAKKM-----ADSLSLDIENKDKEIYDLKHELIAAQIKA 105 (138)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999984 22211232233444455566677777765543 3344444443333222221 2345577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhh
Q 012561 166 EELNLIIVELRKSFASLQEKLAKEESD 192 (461)
Q Consensus 166 eEL~~~i~ELr~~~~SLqe~L~keese 192 (461)
++++.-+.+|++.+..|++++.+-|++
T Consensus 106 e~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 106 ESSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888899999999999999888765
No 94
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=54.93 E-value=54 Score=26.75 Aligned_cols=41 Identities=12% Similarity=0.122 Sum_probs=30.4
Q ss_pred hhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhh
Q 012561 290 QYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVR 330 (461)
Q Consensus 290 ~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvR 330 (461)
....|...+.....++-+-..|-+.|..||..||+.+.+..
T Consensus 7 rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~ 47 (83)
T 2xdj_A 7 RVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQ 47 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34444445555556778888899999999999999887653
No 95
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=54.58 E-value=78 Score=25.00 Aligned_cols=58 Identities=21% Similarity=0.195 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhh
Q 012561 216 SLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRG 273 (461)
Q Consensus 216 ~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~ 273 (461)
.|-.|.+.+...+..++.++...++-+..+-+-..|||.=+.-|+.|++.+.+.+...
T Consensus 10 ~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 10 MLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555666666666666666665554443
No 96
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=53.70 E-value=51 Score=27.36 Aligned_cols=51 Identities=18% Similarity=0.272 Sum_probs=34.2
Q ss_pred HhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH
Q 012561 302 KASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE 352 (461)
Q Consensus 302 kaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE 352 (461)
.++.+..|+-|..+-.|+...|..++..--.=--.-..-+.|.+|+.+.++
T Consensus 16 QSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~ 66 (81)
T 1wt6_A 16 QEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQE 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888999999999999999998876542211223344555555555555
No 97
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=53.05 E-value=1.1e+02 Score=26.50 Aligned_cols=52 Identities=12% Similarity=0.300 Sum_probs=40.7
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhh
Q 012561 277 KSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQ 328 (461)
Q Consensus 277 K~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqq 328 (461)
+..-+|++..|+-++.--..-+.+-|+..+.+--.|+.|..++..|..++++
T Consensus 57 ~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~ 108 (110)
T 2v4h_A 57 HKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNK 108 (110)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 4455688888888887777888888888888888888888888888776654
No 98
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=52.05 E-value=35 Score=26.31 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 012561 170 LIIVELRKSFASLQEKLA 187 (461)
Q Consensus 170 ~~i~ELr~~~~SLqe~L~ 187 (461)
.-|.|||+++.+|+-.|.
T Consensus 56 ~Ei~elrr~iq~L~~el~ 73 (77)
T 3trt_A 56 QESTEYRRQVQSLTMEVD 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 347788888888887664
No 99
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=51.14 E-value=1.4e+02 Score=27.09 Aligned_cols=67 Identities=18% Similarity=0.178 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHchH---HHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHH
Q 012561 137 AFEHERLRNALELSEQKCAEMELALRNKE---EELNLIIVELRKSFASLQEKLAKEESDKLAALDSLARE 203 (461)
Q Consensus 137 ~~EqekL~~~Le~~ek~~~e~E~~lk~k~---eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kE 203 (461)
...+..|+..+...+.++.+.+..++.|- +.++.-+.-|+-++..+++++.+-+.|=-..|+.+-+-
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~r 136 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKK 136 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55888999999999999999998888776 66677777788889999999999888877777766443
No 100
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=50.54 E-value=1.5e+02 Score=30.98 Aligned_cols=20 Identities=5% Similarity=0.213 Sum_probs=9.1
Q ss_pred HhhHHHHHHHHHHHHHHhhh
Q 012561 310 RQKDALVHEVASMRVELQQV 329 (461)
Q Consensus 310 kQK~~L~~Ev~~LR~ELqqv 329 (461)
++.+.+...|.-|...|+++
T Consensus 93 k~q~~V~~~LqeLe~~l~~l 112 (464)
T 1m1j_B 93 KQEKTVKPVLRDLKDRVAKF 112 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhHhHHHHHHHHHHHH
Confidence 44444444444444444433
No 101
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=50.22 E-value=67 Score=30.03 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhch
Q 012561 369 NQIRSLSDQLAAAEEKLEVSDL 390 (461)
Q Consensus 369 eqI~~Lq~QLa~A~eKLk~aDl 390 (461)
.+|+.++.+|..|+..|....+
T Consensus 136 ~~l~~~~~~l~~a~~~l~~~~i 157 (369)
T 4dk0_A 136 ENIKQAEIEVNTAETNLGYTKI 157 (369)
T ss_dssp HHHHHHHHHHHHHHHTTCCSSC
T ss_pred HHHHHHHHHHHHHHHHhhcCEE
Confidence 3556666666666655544433
No 102
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=50.13 E-value=1.2e+02 Score=25.80 Aligned_cols=39 Identities=18% Similarity=0.213 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 012561 311 QKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIK 349 (461)
Q Consensus 311 QK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ 349 (461)
+....-.|+..|..+|..-+.-|-..-.+...+..|+..
T Consensus 20 ~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEe 58 (97)
T 2eqb_B 20 ELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVED 58 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666666666666665555555555555543
No 103
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=49.50 E-value=1.2e+02 Score=25.71 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHH
Q 012561 140 HERLRNALELSEQKCAEMELALRNKEEELNLIIVELR 176 (461)
Q Consensus 140 qekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr 176 (461)
.+.|...|.+++.-.+- +...|.+|...|.-++
T Consensus 4 ~~~L~~~L~~aEeaL~~----kq~~id~lke~~~q~~ 36 (94)
T 3jsv_C 4 LEDLRQQLQQAEEALVA----KQELIDKLKEEAEQHK 36 (94)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHH
Confidence 44566666666655443 3334445555554444
No 104
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=49.10 E-value=22 Score=29.42 Aligned_cols=49 Identities=14% Similarity=0.215 Sum_probs=23.8
Q ss_pred hHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHH
Q 012561 275 KEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMR 323 (461)
Q Consensus 275 KEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR 323 (461)
.+|+.+-..++.+|....+||.+|+.+.+-|.+-++=--.|--.++.+|
T Consensus 5 ~~k~~Le~~~~e~k~kv~~LQ~eLdtsE~VQrDFVkLSQsLQvqLE~IR 53 (79)
T 1tu3_F 5 SAKATVEQLMFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIR 53 (79)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777889999999999999999999988776665444444444444
No 105
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=48.82 E-value=1.7e+02 Score=27.10 Aligned_cols=170 Identities=22% Similarity=0.274 Sum_probs=83.6
Q ss_pred hHHhhHhHHHHHHHHH-HHHHHHHHhhh---hhHHH--HHHHHHHHHHHHhhHHHHHHHHHchH-HHHHHHHHH------
Q 012561 108 YKERCENMMDYIKRLR-LCIKWFQELEG---DYAFE--HERLRNALELSEQKCAEMELALRNKE-EELNLIIVE------ 174 (461)
Q Consensus 108 yKgr~EqM~dyIKrLr-~CIrWfqelE~---~y~~E--qekL~~~Le~~ek~~~e~E~~lk~k~-eEL~~~i~E------ 174 (461)
|++|.+-=-+|-|+|+ +|-+|+..+.. ...+. -..+.++++..-..|..+-..|.+.+ +.|...+.+
T Consensus 52 ~keRa~iE~eYak~L~kLakk~~~~~~~~~e~gtl~~aw~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~k~~ 131 (312)
T 3abh_A 52 LHERARIEKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQM 131 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455554457777764 55556543321 11111 23455556666666666666665444 555555444
Q ss_pred ---HH--HHHHHHHHHHhHHHhhHHHHHHhhHH--------HHHHHHHHHHHHh--hh-HHHHHHHHHHHHHHHHHhHhH
Q 012561 175 ---LR--KSFASLQEKLAKEESDKLAALDSLAR--------EKETRLNMERSHA--SL-SEDLGKAQEELQSANQRIASI 238 (461)
Q Consensus 175 ---Lr--~~~~SLqe~L~keeseKl~a~~s~~k--------EkEaR~~~E~~~~--~L-seeL~k~q~E~~~anqqi~sl 238 (461)
++ +.+..--+++.+.-......++...+ ...++...+.... ++ ..+++|++.-+..+.+.+...
T Consensus 132 ~~~~ke~k~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~e~e~a~~~~~~~~~d~~~~~k~~eK~~~k~~k~~~~~~~a 211 (312)
T 3abh_A 132 MGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKT 211 (312)
T ss_dssp TSSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCCSHHHHGGGTTTTSHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 12 22222222222222222222221111 1112221222211 11 266777777777776666666
Q ss_pred HHHH-HHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHH
Q 012561 239 NDMY-KLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIV 281 (461)
Q Consensus 239 qDmy-KRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tiv 281 (461)
.+-| .-++.||..-+.|. .|+...-+.+-.++.++-..+
T Consensus 212 ~~~Y~~~v~~~n~~~~~~~----~~~~~~~~~~Q~lee~Rl~~l 251 (312)
T 3abh_A 212 KEKYEKSLKELDQGTPQYM----ENMEQVFEQCQQFEEKRLRFF 251 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 5554 45778888777775 466666666667776665444
No 106
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=48.52 E-value=67 Score=24.45 Aligned_cols=17 Identities=35% Similarity=0.438 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHhH
Q 012561 220 DLGKAQEELQSANQRIA 236 (461)
Q Consensus 220 eL~k~q~E~~~anqqi~ 236 (461)
++..++.|..+||++|-
T Consensus 33 ~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 33 DAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 56688999999999874
No 107
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=48.05 E-value=81 Score=27.03 Aligned_cols=67 Identities=21% Similarity=0.288 Sum_probs=45.7
Q ss_pred hhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhh
Q 012561 257 TKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVR 330 (461)
Q Consensus 257 SkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvR 330 (461)
.-||..|+-+.+.+-+.+-+=+|-=.++-+|+. -|..-++-.++.-++-+.|..||+-|-..||..+
T Consensus 21 ~lLq~qLT~Aq~~l~~~eaQAaTCNqTV~tL~~-------SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 21 HLLQRQLTRTQDSLLQAETQANSCNLTVVTLQE-------SLEKKVSQALEQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777777777777666666566555555 5566666666666777788888888877777655
No 108
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=47.89 E-value=25 Score=27.59 Aligned_cols=32 Identities=28% Similarity=0.534 Sum_probs=25.3
Q ss_pred HHHhHH----hhhhhhHHHHHHhhHHHHHHHHHHHH
Q 012561 347 VIKHKE----LAVSSEDLEARCASQSNQIRSLSDQL 378 (461)
Q Consensus 347 ~~~ykE----l~~k~~~LEetCssQ~eqI~~Lq~QL 378 (461)
+.+.|+ |..|++.||..|+-+...|.-|..=|
T Consensus 13 ~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LL 48 (58)
T 3a2a_A 13 LLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLL 48 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555 88899999999999999888776543
No 109
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=47.68 E-value=14 Score=24.87 Aligned_cols=18 Identities=39% Similarity=0.702 Sum_probs=14.1
Q ss_pred HHHHHHHHhHHHHhhhhhhhHHhHHhhh
Q 012561 404 KLINELRNHLEDAEYKLIEGEKLRKRLH 431 (461)
Q Consensus 404 ~~i~eLq~RLadaE~kiiEGEkLRKKLH 431 (461)
+-+++||+||-. |||||.
T Consensus 8 keledlqerlrk----------lrkklr 25 (27)
T 3twe_A 8 KELEDLQERLRK----------LRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHH----------HHHHHH
T ss_pred HHHHHHHHHHHH----------HHHHhc
Confidence 457899999964 888875
No 110
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=47.43 E-value=33 Score=28.60 Aligned_cols=43 Identities=14% Similarity=0.188 Sum_probs=28.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHhHH------HHHHHHHHHHhHHHhhhh
Q 012561 215 ASLSEDLGKAQEELQSANQRIASIN------DMYKLLQEYNSSLQHYNT 257 (461)
Q Consensus 215 ~~LseeL~k~q~E~~~anqqi~slq------DmyKRLQEYNTSLQQYNS 257 (461)
++|..++..++.+...+.++|..+. |-.+-+++|..-|-.||-
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNe 52 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNE 52 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhH
Confidence 4455555555555566666665554 456678888888888884
No 111
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=47.12 E-value=81 Score=29.08 Aligned_cols=17 Identities=12% Similarity=0.300 Sum_probs=12.1
Q ss_pred CcccccHHHHHHHHhhh
Q 012561 83 GTIEFTREDVEALLSEK 99 (461)
Q Consensus 83 ~~ieFtredVeALLnEK 99 (461)
+.-..|-+|+..||+--
T Consensus 34 ~L~~LS~~eL~~LL~~~ 50 (192)
T 2p22_C 34 GINLLSSKEIIDLIQTH 50 (192)
T ss_dssp GGGSCTTHHHHHHHHHC
T ss_pred HHHhCCHHHHHHHHhCh
Confidence 33456778899998864
No 112
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=46.84 E-value=1.1e+02 Score=24.43 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHH
Q 012561 139 EHERLRNALELSEQKCAEMELALR 162 (461)
Q Consensus 139 EqekL~~~Le~~ek~~~e~E~~lk 162 (461)
|.+.|-..|+..+.+.++++..|-
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777888888888888888884
No 113
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=46.44 E-value=1e+02 Score=28.12 Aligned_cols=27 Identities=11% Similarity=0.071 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 012561 221 LGKAQEELQSANQRIASINDMYKLLQE 247 (461)
Q Consensus 221 L~k~q~E~~~anqqi~slqDmyKRLQE 247 (461)
++.++.|+.+++-+..++++=.++||+
T Consensus 98 ~e~l~DEl~aLqlq~n~lE~kl~kLq~ 124 (152)
T 3a7p_A 98 TERLNAALISGTIENNVLQQKLSDLKK 124 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555554444444
No 114
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=45.64 E-value=1.4e+02 Score=26.51 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhHHHhhhhhhhccH
Q 012561 239 NDMYKLLQEYNSSLQHYNTKLQKDI 263 (461)
Q Consensus 239 qDmyKRLQEYNTSLQQYNSkLQaDl 263 (461)
+++.+-..++=+.|..||+.|.+.+
T Consensus 71 e~l~~~veeA~~~L~eYn~rL~~E~ 95 (152)
T 4fla_A 71 ERLSKTVDEACLLLAEYNGRLAAEL 95 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555566666665443
No 115
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=45.40 E-value=2.9e+02 Score=29.01 Aligned_cols=45 Identities=18% Similarity=0.275 Sum_probs=28.3
Q ss_pred hhhhhhHHhHHHHHHHHHhHHHHhhhhhhhHHhHHhhhhhhhhhc
Q 012561 394 ETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILELE 438 (461)
Q Consensus 394 etrte~E~Qk~~i~eLq~RLadaE~kiiEGEkLRKKLHNTILELK 438 (461)
.-..-|+.-...+.+-+.+|.++-.+..+.+.|+..++...-++.
T Consensus 575 ~L~~rw~~L~~~~~~R~~~L~~~l~~~~~~~~l~~~F~~~a~~~~ 619 (863)
T 1sjj_A 575 EINGKWEHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIG 619 (863)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 344556666666677777777776666667777777655444433
No 116
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=44.93 E-value=1.4e+02 Score=25.18 Aligned_cols=74 Identities=19% Similarity=0.291 Sum_probs=47.2
Q ss_pred hhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhh
Q 012561 256 NTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDH 335 (461)
Q Consensus 256 NSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr 335 (461)
|+-.+..+++...+...++++|..+-..|..+.. -+-.-.++..-+-+.|.+|++.=+.||+.+..++++
T Consensus 10 ~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~----------~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~ 79 (107)
T 2no2_A 10 NAEVTKQVSMARQAQVDLEREKKELEDSLERISD----------QGQRKTQEQLEVLESLKQELATSQRELQVLQGSLET 79 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666666666666665555554441 112334567778888888998888898888887776
Q ss_pred hHHH
Q 012561 336 QLSQ 339 (461)
Q Consensus 336 ~~~Q 339 (461)
...-
T Consensus 80 ~~~~ 83 (107)
T 2no2_A 80 SAQS 83 (107)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 117
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=44.35 E-value=1.5e+02 Score=25.32 Aligned_cols=36 Identities=17% Similarity=0.163 Sum_probs=20.5
Q ss_pred hHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhH
Q 012561 153 KCAEMELALRNKEEELNLIIVELRKSFASLQEKLAK 188 (461)
Q Consensus 153 ~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~k 188 (461)
.+.+.-..+..+.+++...|.+|+...+.|..++..
T Consensus 78 ~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~ 113 (142)
T 3gp4_A 78 TLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDN 113 (142)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455666666666666666666666555443
No 118
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=44.33 E-value=1.2e+02 Score=24.18 Aligned_cols=47 Identities=21% Similarity=0.263 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHH
Q 012561 139 EHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEK 185 (461)
Q Consensus 139 EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~ 185 (461)
|.+-++++-.+.+...+++|.........++.+|..|...+..+...
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e 48 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEE 48 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777777777666666666666665555554443
No 119
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=43.92 E-value=1.2e+02 Score=26.90 Aligned_cols=59 Identities=27% Similarity=0.374 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 012561 166 EELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSA 231 (461)
Q Consensus 166 eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~a 231 (461)
++|+--|.+|...++-|+..+.+-++ ...+++|-. ..++.-++..-.||++.|.++..+
T Consensus 64 eeL~~ki~eL~~kvA~le~e~~~~e~--~~~~~~~~~-----e~le~~la~KkAEleKtqa~Ld~a 122 (125)
T 2pms_C 64 EELSDKIDELDAEIAKLEDQLKAAEE--NNNVEDYFK-----EGLEKTIAAKKAELEKTEADLKKA 122 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCC------CHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHh--cccchHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777788888877776554 455555443 344666777788899998888765
No 120
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=43.19 E-value=1.4e+02 Score=24.63 Aligned_cols=61 Identities=13% Similarity=0.199 Sum_probs=32.3
Q ss_pred HHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhh
Q 012561 269 SIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQV 329 (461)
Q Consensus 269 ~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqv 329 (461)
-+.+++--=...|++++-|+=-+..|+.+-.....-.+++-..++.|..|...|+.|....
T Consensus 7 lleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~w 67 (81)
T 2jee_A 7 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGW 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3444444444566666665555555555555554444445455555555555555554443
No 121
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=42.62 E-value=83 Score=25.45 Aligned_cols=47 Identities=11% Similarity=0.296 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHH------hhhhhhhccHH
Q 012561 216 SLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQ------HYNTKLQKDID 264 (461)
Q Consensus 216 ~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQ------QYNSkLQaDl~ 264 (461)
+|..+++-+..|...++++++..++-+.++. ....+ +|..+|+.+-.
T Consensus 1 ~~~k~v~~l~~E~eel~~klk~~~ee~~~~~--eee~~~~~~k~~lek~L~~E~~ 53 (71)
T 1uix_A 1 GSTSDVANLANEKEELNNKLKEAQEQLSRLK--DEEISAAAIKAQFEKQLLTERT 53 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888889999999999999999888887 45555 78777776543
No 122
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=42.11 E-value=85 Score=25.36 Aligned_cols=47 Identities=13% Similarity=0.340 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHH----hhhhhhhccHH
Q 012561 216 SLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQ----HYNTKLQKDID 264 (461)
Q Consensus 216 ~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQ----QYNSkLQaDl~ 264 (461)
.|..+++-+..|...++++++..++-+.++. ....+ +|..+|+.+-.
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~--eee~~~~~~~lek~L~~E~~ 53 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEK--EEEISNLKAAFEKNINTERT 53 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999998887 55566 78777776543
No 123
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=41.79 E-value=43 Score=30.55 Aligned_cols=56 Identities=23% Similarity=0.297 Sum_probs=31.0
Q ss_pred HhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhH
Q 012561 282 ENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQL 337 (461)
Q Consensus 282 Enls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~ 337 (461)
..+..||....+.+.+|....++-.=--.+-++|.+|+..||.+|...|-+-+.++
T Consensus 85 ~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~em 140 (175)
T 3lay_A 85 TQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAM 140 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555544433221112345778888888888777766655444
No 124
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=40.91 E-value=56 Score=31.94 Aligned_cols=167 Identities=16% Similarity=0.142 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhh----hhhhhhh----HHHHHHHhHhhHHHH
Q 012561 237 SINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLST----LRGQYIS----LQEQLSTYKASQDEA 308 (461)
Q Consensus 237 slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~----LrG~~~S----Lq~QL~~skaSq~Ea 308 (461)
.++-+-.++..|=+.+++|=..++..+... +--+.+..=+..++.+|++ |+....- +..+|.....
T Consensus 33 ~~e~v~~~fwdY~~~~~~~a~~~~eql~~s-~l~kel~~l~~~~~~el~~y~~~l~~qL~P~~~e~~~~l~~~~~----- 106 (307)
T 2l7b_A 33 RWELALGRFWDYLRWVQTLSEQVQEELLSS-QVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQ----- 106 (307)
T ss_dssp HHHHHHHHHHHHHHHTCCCSTHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCSSTHHHHHHHHH-----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHhHH-----
Confidence 456666788888888888877777655311 1112333334455555544 4443221 1333322221
Q ss_pred HHhhHHHHHHHHHHHHHHhhhhhhhhhhHH-HHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhh
Q 012561 309 MRQKDALVHEVASMRVELQQVRDDRDHQLS-QVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEV 387 (461)
Q Consensus 309 ~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~-QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~ 387 (461)
.-+..|..+++-+|..|...+++=...+. .+..|...+.-|-+ +-=..-+..+..|+.+|+---++|+-
T Consensus 107 -~Lr~~L~~dlEelR~~L~Py~~el~~~l~~~~eelr~kL~Py~~---------EL~~~~~~~~eeLr~~L~py~eeLr~ 176 (307)
T 2l7b_A 107 -AAQARLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLR---------KLRKRLLRDADDLQKRLAVYQAGARE 176 (307)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHTSCCSS
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhhHHHHHHHHhhHHHHHHH
Confidence 22334445555555555554443222222 44555555555555 22333445666777777665555531
Q ss_pred hchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhhhhHHhHHhhhhhhhhhcc
Q 012561 388 SDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILELEV 439 (461)
Q Consensus 388 aDlsa~etrte~E~Qk~~i~eLq~RLadaE~kiiEGEkLRKKLHNTILELKG 439 (461)
.=..-+++|+.+|+= -.+.+|.+++ .+-.+||
T Consensus 177 -------------kl~~~veelr~~L~P------y~e~~~~~~~-~v~~~k~ 208 (307)
T 2l7b_A 177 -------------GAERGLSAIRERLGP------LVEQGRVRAA-TVGSLAG 208 (307)
T ss_dssp -------------HHHHHHHHHHHHCSS------SCTTTTTHHH-HHHHHHC
T ss_pred -------------HHHHHHHHHHHHhhh------HHHHHHHHHh-hhhhhhh
Confidence 122345667776642 1224555555 3334444
No 125
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=40.81 E-value=1.2e+02 Score=26.09 Aligned_cols=69 Identities=20% Similarity=0.355 Sum_probs=50.9
Q ss_pred HHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhh---hhhhhH
Q 012561 269 SIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRD---DRDHQL 337 (461)
Q Consensus 269 ~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRd---DRDr~~ 337 (461)
..+.+--||++++=.+-+||+...-+.++++..+-.-.|..+.-+.+......|..++..+++ .||..+
T Consensus 17 snAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD~LI 88 (103)
T 4h22_A 17 SNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQREEML 88 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCC
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566788888888888999888888888888888888877777777766666666655552 455544
No 126
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=40.66 E-value=1.4e+02 Score=27.12 Aligned_cols=20 Identities=40% Similarity=0.635 Sum_probs=0.0
Q ss_pred hhhhccHHHHHHHHhhhhhH
Q 012561 257 TKLQKDIDAAHESIKRGEKE 276 (461)
Q Consensus 257 SkLQaDl~~~~e~~~r~eKE 276 (461)
-.|..||+.++++-+.+++.
T Consensus 118 qgLrRDLeASReAKKqlEad 137 (146)
T 2xnx_M 118 QSLRRDLDASREAKKQVEKD 137 (146)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45777899888888877653
No 127
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=40.03 E-value=1.6e+02 Score=24.30 Aligned_cols=86 Identities=10% Similarity=0.163 Sum_probs=43.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Q 012561 263 IDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQA 342 (461)
Q Consensus 263 l~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~Qvqs 342 (461)
..+....+..+..|.+.++..|..|--....|..+|....+-...-=.+=...-.|-..++-.+-..-|+||-.-+|..-
T Consensus 6 ~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~ 85 (96)
T 3q8t_A 6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRY 85 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666665555555555555554444333222333344455555555555555555555555444
Q ss_pred HHHHHH
Q 012561 343 LTAEVI 348 (461)
Q Consensus 343 L~aE~~ 348 (461)
...-+.
T Consensus 86 ~~~qLd 91 (96)
T 3q8t_A 86 AQMQLD 91 (96)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
No 128
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=39.93 E-value=1.6e+02 Score=26.03 Aligned_cols=72 Identities=19% Similarity=0.179 Sum_probs=47.2
Q ss_pred hhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhhhhHHhHHhhhh
Q 012561 354 AVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHN 432 (461)
Q Consensus 354 ~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~kiiEGEkLRKKLHN 432 (461)
--....||..-....++|..|+.||..|+.-.+-||-- |++=-+.+.-++..|+.||-+.-.+|.==+.|-+
T Consensus 37 eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrK-------yeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEe 108 (147)
T 2b9c_A 37 ERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRK-------YEEVARKLVIIESDLERAEERAELSEGKCAELEE 108 (147)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455688888888889999999999998777766654 5555555666666666555555555443333333
No 129
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=39.18 E-value=3.7e+02 Score=28.31 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=18.1
Q ss_pred HHHHhHhHHHHHHHHHHHHhHHHhhhhhh
Q 012561 231 ANQRIASINDMYKLLQEYNSSLQHYNTKL 259 (461)
Q Consensus 231 anqqi~slqDmyKRLQEYNTSLQQYNSkL 259 (461)
+.++-..|++..+++|++...+++|....
T Consensus 466 ~~~R~~~L~~~l~~~q~~~~l~~~f~~~a 494 (863)
T 1sjj_A 466 TQKRREALERTEKLLETIDQLYLEYAKRA 494 (863)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777777776666666666543
No 130
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=39.03 E-value=1.5e+02 Score=23.86 Aligned_cols=30 Identities=13% Similarity=0.185 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHHHH
Q 012561 317 HEVASMRVELQQVRDDRDHQLSQVQALTAE 346 (461)
Q Consensus 317 ~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE 346 (461)
.|+.-|+..|......|...-.+..+|..|
T Consensus 21 eel~~lke~l~k~e~~rkele~~~~~l~~e 50 (89)
T 3bas_A 21 KQMDKMKEDLAKTERIKKELEEQNVTLLEQ 50 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555554444444444444444333
No 131
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=38.96 E-value=2.8e+02 Score=26.98 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHHHHHHhhhh
Q 012561 311 QKDALVHEVASMRVELQQVR 330 (461)
Q Consensus 311 QK~~L~~Ev~~LR~ELqqvR 330 (461)
.-+.|-.||.-|-.+|+..|
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~ 463 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDAS 463 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555433
No 132
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=38.47 E-value=99 Score=23.62 Aligned_cols=40 Identities=15% Similarity=0.191 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhh
Q 012561 316 VHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAV 355 (461)
Q Consensus 316 ~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~ 355 (461)
..+..+|-.+++.+..+.+..-.+|..|..|+..+|.|+.
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677777777777888888888888888888887553
No 133
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=38.42 E-value=1.1e+02 Score=23.61 Aligned_cols=43 Identities=33% Similarity=0.424 Sum_probs=30.4
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH
Q 012561 303 ASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE 352 (461)
Q Consensus 303 aSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE 352 (461)
||-|.-++|-++|..|=.-||.||+ .-.+|+..|..|-...||
T Consensus 3 asYdQL~~QVe~Lk~ENshLrrEL~-------dNS~~lskLE~ets~mKe 45 (54)
T 1deb_A 3 ASYDQLLKQVEALKMENSNLRQELE-------DNSNHLTKLETEASNMKE 45 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHH-------hhHHHHHHHHhhhhhHHH
Confidence 3445556666667777777776664 346788889988888888
No 134
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=38.31 E-value=57 Score=25.97 Aligned_cols=41 Identities=10% Similarity=0.289 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHH
Q 012561 224 AQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDID 264 (461)
Q Consensus 224 ~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~ 264 (461)
-..-+..++.+|..+++.+..|+.=|-.|..++..|++.+.
T Consensus 27 K~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 27 KEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777777788888888888888887664
No 135
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=38.22 E-value=1.8e+02 Score=26.17 Aligned_cols=64 Identities=14% Similarity=0.228 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHchHHHHHHHH-----HHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHH
Q 012561 141 ERLRNALELSEQKCAEMELALRNKEEELNLII-----VELRKSFASLQEKLAKEESDKLAALDSLAREK 204 (461)
Q Consensus 141 ekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i-----~ELr~~~~SLqe~L~keeseKl~a~~s~~kEk 204 (461)
..|+.++...+..|..+|.+.+-.+.|..... -..+.++++++.++.++.++.++..+-+.-..
T Consensus 32 ~~l~~~i~q~d~elqQLefq~kr~~~e~~~q~~~~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql 100 (150)
T 4dci_A 32 REISNGIANADQQLAQLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQ 100 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777888888887777766665322 34556678999999999988888776655433
No 136
>1lj2_A NSP3-C, nonstructural RNA-binding protein 34, NS34, NCVP4; NSP3, homodimer, translation, mRNA, closed loop, coiled coil; 2.38A {Simian rotavirus A} SCOP: h.1.13.2
Probab=37.01 E-value=15 Score=31.97 Aligned_cols=30 Identities=30% Similarity=0.442 Sum_probs=26.2
Q ss_pred HhHHHHHHHHHHHHhHHHhhhhhhhccHHH
Q 012561 236 ASINDMYKLLQEYNSSLQHYNTKLQKDIDA 265 (461)
Q Consensus 236 ~slqDmyKRLQEYNTSLQQYNSkLQaDl~~ 265 (461)
.++|++--.=|-+..+||.||.+|-.|+-.
T Consensus 2 ~slQ~vIaqQQ~~In~lq~~~~klE~dlq~ 31 (110)
T 1lj2_A 2 HSLQNVIPQQQAHIAELQVYNNKLERDLQN 31 (110)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888899999999999999988854
No 137
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=36.36 E-value=1e+02 Score=24.54 Aligned_cols=35 Identities=17% Similarity=0.184 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhH
Q 012561 317 HEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHK 351 (461)
Q Consensus 317 ~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~yk 351 (461)
..|..|..+.+.+..+=...-.+|..|..|+..|+
T Consensus 36 ~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 36 TQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33333333333333333333345555555555553
No 138
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=35.82 E-value=46 Score=23.74 Aligned_cols=27 Identities=22% Similarity=0.355 Sum_probs=24.2
Q ss_pred HHchHHHHHHHHHHHHHHHHHHHHHHh
Q 012561 161 LRNKEEELNLIIVELRKSFASLQEKLA 187 (461)
Q Consensus 161 lk~k~eEL~~~i~ELr~~~~SLqe~L~ 187 (461)
|+.|.....+-|.+|+++.+.|++++.
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 778888999999999999999999864
No 139
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=35.80 E-value=86 Score=29.04 Aligned_cols=14 Identities=21% Similarity=0.385 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHh
Q 012561 370 QIRSLSDQLAAAEE 383 (461)
Q Consensus 370 qI~~Lq~QLa~A~e 383 (461)
++..++.+|..++.
T Consensus 129 ~l~~~~a~l~~a~a 142 (341)
T 3fpp_A 129 QIGTIDAQIKRNQA 142 (341)
T ss_dssp HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 140
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=35.24 E-value=2.9e+02 Score=26.08 Aligned_cols=59 Identities=25% Similarity=0.394 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHH-HHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHH
Q 012561 219 EDLGKAQEELQSANQRIASINDMY-KLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIV 281 (461)
Q Consensus 219 eeL~k~q~E~~~anqqi~slqDmy-KRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tiv 281 (461)
.+++|++.-+..+.+.+....+-| .-++.||..-+.|+. ++..+-+.+-.++.+....+
T Consensus 183 ke~~K~~~k~~k~~~~~~~a~~~Y~~~l~~~n~~~~~y~~----~~~~~~~~~Q~lEe~Ri~~l 242 (320)
T 3m3w_A 183 EQLRKLQERVGRCTKEAEKMKTQYEQTLAELNRYTPRYME----DMEQAFESCQAAERQRLLFF 242 (320)
T ss_dssp -CCSSSSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 455566555555555544444333 557777777777764 44566666666666665544
No 141
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=35.11 E-value=1.7e+02 Score=26.57 Aligned_cols=28 Identities=14% Similarity=0.088 Sum_probs=13.3
Q ss_pred hhHHHHHHHhHhhHHHHHHhhHHHHHHH
Q 012561 292 ISLQEQLSTYKASQDEAMRQKDALVHEV 319 (461)
Q Consensus 292 ~SLq~QL~~skaSq~Ea~kQK~~L~~Ev 319 (461)
.+|...|..++++....-.....+..+.
T Consensus 69 ~~l~rdleasr~akk~~ea~la~l~~~~ 96 (146)
T 2xnx_M 69 EAITREQEINRNLLGNAKLELDQLSSEK 96 (146)
T ss_dssp TTHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhH
Confidence 4555555555555444433333333333
No 142
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=34.52 E-value=97 Score=26.90 Aligned_cols=47 Identities=26% Similarity=0.389 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhhhhhhc-----------hhhhhhhh-hhHHhHHHHHHHHHhHHHH
Q 012561 370 QIRSLSDQLAAAEEKLEVSD-----------LSALETKT-EFEGQKKLINELRNHLEDA 416 (461)
Q Consensus 370 qI~~Lq~QLa~A~eKLk~aD-----------lsa~etrt-e~E~Qk~~i~eLq~RLada 416 (461)
.|...++||..|.-||+=|. .+++..|+ +...-+.+|.+|+..|||+
T Consensus 43 Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~ 101 (107)
T 2k48_A 43 NITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677778888888887653 34444443 4555566777777777774
No 143
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=34.37 E-value=2.2e+02 Score=25.31 Aligned_cols=78 Identities=22% Similarity=0.233 Sum_probs=47.1
Q ss_pred HHHHHHHHhhhhhccCCCChHHhhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHH---HHHHchH
Q 012561 89 REDVEALLSEKMRYKNKFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEME---LALRNKE 165 (461)
Q Consensus 89 redVeALLnEKmk~k~KfdyKgr~EqM~dyIKrLr~CIrWfqelE~~y~~EqekL~~~Le~~ek~~~e~E---~~lk~k~ 165 (461)
|+.++.|+.+ +.+-|....||++||...|+-=..|-. -|...+..-+...++.+ ..-++|.
T Consensus 67 k~~~e~l~~~---------veeA~~~L~eYn~rL~~E~~dR~~L~~-------~L~~~~~~~~~~l~e~e~~leeyK~Kl 130 (152)
T 4fla_A 67 KEAAERLSKT---------VDEACLLLAEYNGRLAAELEDRRQLAR-------MLVEYTQNQKDVLSEKEKKLEEYKQKL 130 (152)
T ss_dssp HHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888764 456688899999999988865444422 22222222222222222 2456777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012561 166 EELNLIIVELRKSFASL 182 (461)
Q Consensus 166 eEL~~~i~ELr~~~~SL 182 (461)
..+++...+|+.-+.+|
T Consensus 131 ~rv~~vkkeL~~hi~sL 147 (152)
T 4fla_A 131 ARVTQVRKELKSHIQSL 147 (152)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 77777777777766654
No 144
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=34.28 E-value=1.6e+02 Score=22.77 Aligned_cols=63 Identities=21% Similarity=0.123 Sum_probs=41.1
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHh-hHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHH
Q 012561 126 IKWFQELEGDYAFEHERLRNALELSEQ-KCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKE 189 (461)
Q Consensus 126 IrWfqelE~~y~~EqekL~~~Le~~ek-~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~ke 189 (461)
|++++.+- -=+.|+..+-...+.... .|.+....+..+.+++..-|.+|+...+.|+..+..-
T Consensus 9 I~~lr~lG-fsL~eIk~~l~~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~ 72 (99)
T 1q08_A 9 IRHARQLG-FSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQRLNDAC 72 (99)
T ss_dssp HHHHHHTT-CCHHHHHHHHHHHHCGGGCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCC-CCHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555552 223444444332221122 5778888999999999999999999999888877543
No 145
>3si5_X Protein CASC5; BUBR1-blinkin complex, mitotic checkpoint, BUBR1, blinkin/KN chromosome segregation, cell cycle; 2.20A {Homo sapiens}
Probab=34.24 E-value=15 Score=24.41 Aligned_cols=11 Identities=45% Similarity=0.869 Sum_probs=9.0
Q ss_pred hHHHHHHHHHH
Q 012561 114 NMMDYIKRLRL 124 (461)
Q Consensus 114 qM~dyIKrLr~ 124 (461)
+..||||||++
T Consensus 12 nfndFIKRLK~ 22 (24)
T 3si5_X 12 DFNDFIKRLKT 22 (26)
T ss_pred cHHHHHHHHhc
Confidence 56799999985
No 146
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=34.15 E-value=1.2e+02 Score=25.89 Aligned_cols=33 Identities=15% Similarity=0.387 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 012561 317 HEVASMRVELQQVRDDRDHQLSQVQALTAEVIK 349 (461)
Q Consensus 317 ~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ 349 (461)
.+|..||-++...+.+||+.-.++..|..+++.
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367778888888888888888888888888876
No 147
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=33.47 E-value=1.1e+02 Score=28.89 Aligned_cols=42 Identities=17% Similarity=0.270 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchh
Q 012561 340 VQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLS 391 (461)
Q Consensus 340 vqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDls 391 (461)
|+.|..|+....+ .-.+-...|+.|+.||+.+++..+..|-+
T Consensus 22 V~~L~~En~~L~~----------ql~~k~~ei~~L~~ql~sl~~~~~~~~~~ 63 (190)
T 4emc_A 22 VANLVNENFVLSE----------KLDTKATEIKQLQKQIDSLNAQVKELKTQ 63 (190)
T ss_dssp HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 4455555554443 22345567888888888888887654433
No 148
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=33.37 E-value=2.5e+02 Score=24.95 Aligned_cols=41 Identities=17% Similarity=0.213 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHhhhhhh-hhhhHHHHHHHHHHHHHhHH
Q 012561 312 KDALVHEVASMRVELQQVRDD-RDHQLSQVQALTAEVIKHKE 352 (461)
Q Consensus 312 K~~L~~Ev~~LR~ELqqvRdD-RDr~~~QvqsL~aE~~~ykE 352 (461)
+..|..+++-+|..|..-+++ |..---.+..+...+.-|-+
T Consensus 101 r~~L~~d~EelR~~l~p~~~el~~~l~~~~EelR~kl~P~~e 142 (165)
T 1gs9_A 101 QARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLR 142 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666665555432 22222233344444444433
No 149
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=32.88 E-value=2.4e+02 Score=24.42 Aligned_cols=68 Identities=22% Similarity=0.241 Sum_probs=40.3
Q ss_pred HHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHH
Q 012561 281 VENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDL 360 (461)
Q Consensus 281 vEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~L 360 (461)
|++|-.|-.-.+....||..|+--..+|.++-+.==+|| ...-+++=+++|..|..
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDev----------------NK~tl~~R~~~Vsalq~-------- 89 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDV----------------NKSTLQNRRAAVSTLET-------- 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH----------------HHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHH----------------HHHHHHHHHHHHHHHHH--------
Confidence 344444444444555699999888888888765433333 23334444556666666
Q ss_pred HHHHhhHHHHHHHHHHHHHHH
Q 012561 361 EARCASQSNQIRSLSDQLAAA 381 (461)
Q Consensus 361 EetCssQ~eqI~~Lq~QLa~A 381 (461)
-|..|+.|||.+
T Consensus 90 ---------KiaeLKrqLAd~ 101 (107)
T 2k48_A 90 ---------KLGELKRQLADL 101 (107)
T ss_dssp ---------HHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHH
Confidence 566666666654
No 150
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=32.82 E-value=3.7e+02 Score=26.44 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=27.5
Q ss_pred hHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhh
Q 012561 293 SLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRD 331 (461)
Q Consensus 293 SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRd 331 (461)
+||.-|..++....++-+..+.-..||..|+..++.++.
T Consensus 306 ~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~~~~~ 344 (406)
T 4dyl_A 306 SVQHTLTSVTDELAVATEMVFRRQEMVTQLQQELRNEEE 344 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 677777777777777777666666777777777766654
No 151
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=32.60 E-value=3.6e+02 Score=26.35 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=10.8
Q ss_pred HHchHHHHHHHHHHHHHHHHHHHH
Q 012561 161 LRNKEEELNLIIVELRKSFASLQE 184 (461)
Q Consensus 161 lk~k~eEL~~~i~ELr~~~~SLqe 184 (461)
+..|..++...++..++.......
T Consensus 365 l~~~~~~le~~~~~~~~~~~~~~~ 388 (487)
T 3oja_A 365 LEQKKKALDEQVSNGRRAHAELDG 388 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Confidence 444444444444444444444333
No 152
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=32.32 E-value=2.3e+02 Score=23.99 Aligned_cols=54 Identities=11% Similarity=0.295 Sum_probs=35.8
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhh
Q 012561 279 AIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDD 332 (461)
Q Consensus 279 tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdD 332 (461)
+.+|++..|+-++.--..-+.+-|+..+..--.|+.|...+..|+.++.+...+
T Consensus 37 ~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L~~~ 90 (94)
T 3jsv_C 37 IVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLKVG 90 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 345777777777777777777777777777777777777777777666655443
No 153
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=31.85 E-value=57 Score=28.48 Aligned_cols=56 Identities=21% Similarity=0.236 Sum_probs=31.6
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHHHH-----HHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHH
Q 012561 319 VASMRVELQQVRDDRDHQLSQVQALTA-----EVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAA 381 (461)
Q Consensus 319 v~~LR~ELqqvRdDRDr~~~QvqsL~a-----E~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A 381 (461)
...|+.||.+.+.+|..-+..++...+ |.+-|.........+|. +|+.|+..|..|
T Consensus 12 ~~~L~~el~~~~~~r~~~~~~i~~A~~~GDlsEnaey~aak~~q~~~e~-------ri~~L~~~L~~a 72 (156)
T 2f23_A 12 YERLMQQLERERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIEA-------RIDSLEDILSRA 72 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCSCSHHHHHHHHHHHHHHH-------HHHHHHHHHHHE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHH-------HHHHHHHHHHhC
Confidence 456788888866677766666665433 44555553323333332 566666666554
No 154
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=31.62 E-value=1.2e+02 Score=22.23 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=18.0
Q ss_pred hhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHh
Q 012561 287 LRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQ 327 (461)
Q Consensus 287 LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELq 327 (461)
|...+..+.......++..+++...-+.+..+|...|.+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~ 50 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVI 50 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444443
No 155
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=30.31 E-value=46 Score=31.30 Aligned_cols=51 Identities=24% Similarity=0.308 Sum_probs=22.0
Q ss_pred HhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHh
Q 012561 253 QHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKA 303 (461)
Q Consensus 253 QQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~ska 303 (461)
=+|-.++|.-++.++--+.+|+-|=..+-+.+.+.-....+|+.||++.+.
T Consensus 5 ~~YK~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~ 55 (190)
T 4emc_A 5 TVYKNSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNA 55 (190)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356666666677777777777766666666666555555555555555544
No 156
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=29.71 E-value=1.3e+02 Score=26.38 Aligned_cols=48 Identities=23% Similarity=0.313 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhc-----------hhhhhhhh-hhHHhHHHHHHHHHhHHHH
Q 012561 369 NQIRSLSDQLAAAEEKLEVSD-----------LSALETKT-EFEGQKKLINELRNHLEDA 416 (461)
Q Consensus 369 eqI~~Lq~QLa~A~eKLk~aD-----------lsa~etrt-e~E~Qk~~i~eLq~RLada 416 (461)
+.|...++||..|.-||+=+. .+++..|+ +...-+.+|.+|+..|||+
T Consensus 29 ~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~ 88 (113)
T 4fi5_A 29 REINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADR 88 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677778888888887653 34444443 4556667777888877773
No 157
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Probab=29.57 E-value=5.6e+02 Score=27.60 Aligned_cols=29 Identities=14% Similarity=0.380 Sum_probs=15.9
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHhHhHHHH
Q 012561 213 SHASLSEDLGKAQEELQSANQRIASINDM 241 (461)
Q Consensus 213 ~~~~LseeL~k~q~E~~~anqqi~slqDm 241 (461)
.+..+.-.++.++...+...+.|+.|+|+
T Consensus 14 k~~ei~~~v~~lr~~~q~~e~~ik~Le~~ 42 (596)
T 1bg1_A 14 KQQMLEQHLQDVRKRVQDLEQKMKVVENL 42 (596)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555665666666655555553
No 158
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=29.37 E-value=2.3e+02 Score=23.53 Aligned_cols=59 Identities=17% Similarity=0.250 Sum_probs=42.6
Q ss_pred HhhHHHHHHhhHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhH
Q 012561 190 ESDKLAALDSLAREKETRLNMERSHASLSE---DLGKAQEELQSANQRIASINDMYKLLQEYNSS 251 (461)
Q Consensus 190 eseKl~a~~s~~kEkEaR~~~E~~~~~Lse---eL~k~q~E~~~anqqi~slqDmyKRLQEYNTS 251 (461)
+..|-..-..+.||.-=+..+|.++-.++. ..+.|..++...|.+|. |+-..||++|++
T Consensus 24 e~~r~~ir~eI~KElKiKeGaENL~katt~~kk~~~~V~~eL~~sn~kl~---~L~~eL~eL~a~ 85 (86)
T 1cxz_B 24 ELERERLRREIRKELKLKEGAENLRRATTDLGRSLGPVELLLRGSSRRLD---LLHQQLQELHAH 85 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH---HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhcCC
Confidence 333444445567777778888888877744 57889999999998865 556688988875
No 159
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=28.90 E-value=91 Score=26.46 Aligned_cols=45 Identities=16% Similarity=0.229 Sum_probs=40.1
Q ss_pred HHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhh
Q 012561 376 DQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKL 420 (461)
Q Consensus 376 ~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~ki 420 (461)
.+|..-=.+|.--|++..+....|+.=..++...+.+|.+||.+|
T Consensus 37 ~eLEeIV~~LE~gel~LEesl~lyeeG~~L~k~C~~~L~~AE~kV 81 (100)
T 1vp7_A 37 AELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQV 81 (100)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556678889999999999999999999999999999999986
No 160
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=28.87 E-value=3e+02 Score=24.28 Aligned_cols=13 Identities=15% Similarity=0.340 Sum_probs=4.8
Q ss_pred cHHHHHHHHhhhh
Q 012561 262 DIDAAHESIKRGE 274 (461)
Q Consensus 262 Dl~~~~e~~~r~e 274 (461)
.|+-+.+.+-+.+
T Consensus 33 qLTqAQe~l~~~e 45 (121)
T 3mq7_A 33 ELTEAQKGFQDVE 45 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 161
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=28.86 E-value=2.8e+02 Score=23.80 Aligned_cols=36 Identities=25% Similarity=0.171 Sum_probs=19.1
Q ss_pred hhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHH
Q 012561 291 YISLQEQLSTYKASQDEAMRQKDALVHEVASMRVEL 326 (461)
Q Consensus 291 ~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~EL 326 (461)
+.-|+.||+.+..+..++--|--.-..=|..||+-|
T Consensus 20 T~lLq~qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL 55 (99)
T 3ni0_A 20 THLLQRQLTRTQDSLLQAETQANSCNLTVVTLQESL 55 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444666666666555554444444444455555444
No 162
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=28.83 E-value=75 Score=28.30 Aligned_cols=42 Identities=24% Similarity=0.325 Sum_probs=33.0
Q ss_pred HHhHHHHHHHHHhHHHHhhh----hhhhHHhHHhhhhhhhhhcccc
Q 012561 400 EGQKKLINELRNHLEDAEYK----LIEGEKLRKRLHNTILELEVNL 441 (461)
Q Consensus 400 E~Qk~~i~eLq~RLadaE~k----iiEGEkLRKKLHNTILELKGNI 441 (461)
++|-+.|.+|+.-+.+++.. |-+||.|.+++.+.|-.+..+|
T Consensus 88 eeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~ia~~~ 133 (151)
T 1yke_B 88 EEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDFVDGI 133 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788887777776654 5678999999998888888877
No 163
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=28.67 E-value=4.5e+02 Score=26.22 Aligned_cols=120 Identities=18% Similarity=0.184 Sum_probs=70.8
Q ss_pred HHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHH
Q 012561 161 LRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASIND 240 (461)
Q Consensus 161 lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqD 240 (461)
.+..++-.+.+|.=.+.+| .+||+..|+=.++-. +.+ --.|+.++..--..++.++.++.+
T Consensus 159 k~~a~~af~~~~~~f~~q~-~~~e~~~~~~~~~~~-----------~~~-------~~~e~~~~~~n~~~l~~~~~~~~~ 219 (373)
T 3hhm_B 159 KRTAIEAFNETIKIFEEQC-QTQERYSKEYIEKFK-----------REG-------NEKEIQRIMHNYDKLKSRISEIID 219 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHT-----------TTT-------CCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhhhh-----------hhc-------ChHHHHHHHHhHHHHHHHHHHHHH
Confidence 3456667777777777888 678888766543321 111 223666777777778888888888
Q ss_pred HHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHH
Q 012561 241 MYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLS 299 (461)
Q Consensus 241 myKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~ 299 (461)
--.+|+++=..-..+|--|..++....-.+-.+-|-|...++-|......-+-++..|.
T Consensus 220 ~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~rd~~~~~L~~~g~~~~~i~~~L~ 278 (373)
T 3hhm_B 220 SRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTRDQYLMWLTQKGVRQKKLNEWLG 278 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhc
Confidence 88888888777778888777777777777777777777766666555444344444443
No 164
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=28.50 E-value=2e+02 Score=22.00 Aligned_cols=64 Identities=14% Similarity=0.285 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHH
Q 012561 167 ELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASIN 239 (461)
Q Consensus 167 EL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slq 239 (461)
.|..++.|+|.+|..+-.+- +.++|.. |. -+=. .+-..-..-+++|..++.|+..++.+|.+|+
T Consensus 6 DL~~il~eiRaQYE~ia~kn-r~EaE~~-----y~-~k~e--el~~~~~~~~~~l~~~k~Ei~elrr~iq~L~ 69 (77)
T 3trt_A 6 DCTAAMRDVRQQYESVAAKN-LQEAEEW-----YK-SKFA--DLSEAANRNNDALRQAKQESTEYRRQVQSLT 69 (77)
T ss_dssp CCHHHHHHHHHHHHHHHHHH-HHHHHHH-----HH-HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHh-HHHHHHH-----HH-HHHH--HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999887654 3444432 11 1100 1122223344556666666655555554443
No 165
>3tl4_X Glutaminyl-tRNA synthetase; glutamine, appended domain, hinge, tRNA LIG amidotransferase, ligase; 2.30A {Saccharomyces cerevisiae}
Probab=28.37 E-value=22 Score=32.77 Aligned_cols=49 Identities=22% Similarity=0.382 Sum_probs=36.7
Q ss_pred CCCCCc-ccccHHHHHHHHhhhhhccCCC-ChHHhhHhHHHHHHHHHH--HHHH
Q 012561 79 GSECGT-IEFTREDVEALLSEKMRYKNKF-NYKERCENMMDYIKRLRL--CIKW 128 (461)
Q Consensus 79 gse~~~-ieFtredVeALLnEKmk~k~Kf-dyKgr~EqM~dyIKrLr~--CIrW 128 (461)
-.+||+ |+.|+|||++.+.+-+. .+|= -.+.|--+|-.++-.+|. =.+|
T Consensus 108 e~~cGVGV~VT~EqI~~~V~~~i~-~~k~~i~~~RY~~~g~ll~~vr~~p~LkW 160 (187)
T 3tl4_X 108 NENSGVGIEITEDQVRNYVMQYIQ-ENKERILTERYKLVPGIFADVKNLKELKW 160 (187)
T ss_dssp HHTTTTTCCCCHHHHHHHHHHHHH-HTHHHHHHHGGGGHHHHHHHHHTCGGGTT
T ss_pred HHHCCCCeEeCHHHHHHHHHHHHH-HhHHHHHHhccccHHHHHHHHhcccCCCC
Confidence 345665 88999999999999886 3332 234565589999999997 7888
No 166
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=28.29 E-value=5.6e+02 Score=27.18 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=22.7
Q ss_pred hhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHH
Q 012561 133 EGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRK 177 (461)
Q Consensus 133 E~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~ 177 (461)
|-.|-.+....+..|...++.-++..+.-..+..+..+...++..
T Consensus 4 ~a~yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~a 48 (497)
T 3iox_A 4 EADYQAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTA 48 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 334555555555555555555555555554455554444444333
No 167
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=28.25 E-value=1.2e+02 Score=28.35 Aligned_cols=7 Identities=0% Similarity=-0.021 Sum_probs=2.6
Q ss_pred HHHhHHH
Q 012561 409 LRNHLED 415 (461)
Q Consensus 409 Lq~RLad 415 (461)
++..|+.
T Consensus 141 ~~~~l~~ 147 (369)
T 4dk0_A 141 AEIEVNT 147 (369)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 168
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=27.58 E-value=1.6e+02 Score=23.70 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=19.3
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHhHhhHH
Q 012561 279 AIVENLSTLRGQYISLQEQLSTYKASQD 306 (461)
Q Consensus 279 tivEnls~LrG~~~SLq~QL~~skaSq~ 306 (461)
+=++| ..|.|...+|+.+|..++..|+
T Consensus 12 ~E~~N-~~Le~~v~~le~~Le~s~~~q~ 38 (72)
T 3cve_A 12 VEIRN-KDLEGQLSEMEQRLEKSQSEQD 38 (72)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh-hHHHHHHHHHHHHHHHHHHHHH
Confidence 33344 4578888888888888887765
No 169
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=27.53 E-value=1.6e+02 Score=24.13 Aligned_cols=55 Identities=18% Similarity=0.232 Sum_probs=31.2
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 012561 279 AIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVI 348 (461)
Q Consensus 279 tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~ 348 (461)
+=++| ..|.+.+.+|+.+|..++..|+ .++.||+++=+.=|-++-++..|.--++
T Consensus 18 ~E~rN-~~Le~~v~~le~~Le~s~~~q~--------------~~~~Elk~l~e~Ld~KI~eL~elRqgLa 72 (79)
T 3cvf_A 18 LETRN-AELEHQLRAMERSLEEARAERE--------------RARAEVGRAAQLLDVSLFELSELREGLA 72 (79)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhh-hHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33344 4577888888888888877764 3344444444444444444444444333
No 170
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=27.51 E-value=1.7e+02 Score=25.02 Aligned_cols=74 Identities=16% Similarity=0.089 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 012561 115 MMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEE 190 (461)
Q Consensus 115 M~dyIKrLr~CIrWfqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~kee 190 (461)
.++|++-||.-|--|...=-+++.==- --+-|++=+..=-.-..|-...-..-....|.|.-|..||++|....
T Consensus 2 ~~ef~~~l~~sv~if~NRmksn~~RGr--si~nDssVQsLF~~lt~MH~~Ll~~i~~~ee~R~~yE~LQDkL~qi~ 75 (98)
T 3f1i_H 2 HEQFLKALQNAVTTFVNRMKSNHMRGR--SITNDSAVLSLFQSINGMHPQLLELLNQLDERRLYYEGLQDKLAQIR 75 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC--CGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC--CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777777777777654332221000 00123333333333344444455555566788999999999998764
No 171
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=26.84 E-value=1.6e+02 Score=25.06 Aligned_cols=47 Identities=21% Similarity=0.358 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhhhhhhc-----------hhhhhhhh-hhHHhHHHHHHHHHhHHHH
Q 012561 370 QIRSLSDQLAAAEEKLEVSD-----------LSALETKT-EFEGQKKLINELRNHLEDA 416 (461)
Q Consensus 370 qI~~Lq~QLa~A~eKLk~aD-----------lsa~etrt-e~E~Qk~~i~eLq~RLada 416 (461)
.|...+.||..|.-||+=+. .+++..|+ +...-+.+|.+|+..|||+
T Consensus 13 e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~ 71 (96)
T 2ic9_A 13 NITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADL 71 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788888888887653 34455443 4556667778888888774
No 172
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=26.83 E-value=1.4e+02 Score=29.57 Aligned_cols=52 Identities=19% Similarity=0.237 Sum_probs=0.0
Q ss_pred HhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhh
Q 012561 349 KHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLI 421 (461)
Q Consensus 349 ~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~kii 421 (461)
+++-+..+...||.+...+..+|+.|+.+|.. ++..|.+|+..+.+.+.++.
T Consensus 6 ~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~---------------------~~~~i~~l~~~i~~l~~~~~ 57 (323)
T 1lwu_C 6 TVQKILEEVRILEQIGVSHDAQIQELSEMWRV---------------------NQQFVTRLQQQLVDIRQTCS 57 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHh
No 173
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=26.37 E-value=2.7e+02 Score=22.85 Aligned_cols=92 Identities=13% Similarity=0.106 Sum_probs=58.0
Q ss_pred hhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH------HHHHHHhHHhhhhhhHHHHHHh
Q 012561 292 ISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQAL------TAEVIKHKELAVSSEDLEARCA 365 (461)
Q Consensus 292 ~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL------~aE~~~ykEl~~k~~~LEetCs 365 (461)
.+|+.-|+...-.-+.|..+-.....++......|.+..+.|+.+..+.... ..++..|.. =...|+....
T Consensus 8 ~~L~~ll~l~~~~ed~a~~~l~~a~~~~~~~~~~L~~L~~~~~~y~~~~~~~~~~g~~~~~l~~~~~---fi~~L~~~I~ 84 (150)
T 3ajw_A 8 GALETLKDLAEKEVDDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRSNLNTDMGNGIASNRWINYQQ---FIQTLEKAIE 84 (150)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--CCSGGGHHHHHHHHH---HHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH---HHHHHHHHHH
Confidence 3566677777777777777777777777777777777776666654443321 223334443 3556777777
Q ss_pred hHHHHHHHHHHHHHHHHhhhh
Q 012561 366 SQSNQIRSLSDQLAAAEEKLE 386 (461)
Q Consensus 366 sQ~eqI~~Lq~QLa~A~eKLk 386 (461)
.|...+..++.++..+...+.
T Consensus 85 ~q~~~l~~~~~~~e~~r~~l~ 105 (150)
T 3ajw_A 85 QHRLQLTQWTQKVDLALKSWR 105 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777766654
No 174
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=26.06 E-value=2.8e+02 Score=22.87 Aligned_cols=43 Identities=19% Similarity=0.258 Sum_probs=28.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 012561 306 DEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVI 348 (461)
Q Consensus 306 ~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~ 348 (461)
++-|.+-|.|..|-..|+.||.-++.-|.+.-..+..|..|+.
T Consensus 33 ~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568888888888889999988888888887777776666653
No 175
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=25.77 E-value=3.8e+02 Score=24.33 Aligned_cols=100 Identities=12% Similarity=0.155 Sum_probs=53.7
Q ss_pred HhhhhhhhccHHHHHHHHhhhh--hH-HHHHHHhhhhhhhhhhhHHHHHHHhHhhHH----H-HHHhhHHHHHHHHHHHH
Q 012561 253 QHYNTKLQKDIDAAHESIKRGE--KE-KSAIVENLSTLRGQYISLQEQLSTYKASQD----E-AMRQKDALVHEVASMRV 324 (461)
Q Consensus 253 QQYNSkLQaDl~~~~e~~~r~e--KE-K~tivEnls~LrG~~~SLq~QL~~skaSq~----E-a~kQK~~L~~Ev~~LR~ 324 (461)
..|=+.|...+..+-+.+..-+ ++ +.-|-+++.+|-.....++.+|.-.-..-- . .-.-+..|..+++-+|.
T Consensus 15 w~Y~~~l~~~a~~~v~~l~~sel~qqL~~~l~e~~~~l~~~~~~l~~~l~p~~~e~~~~l~~~~~~lr~~l~kd~ee~r~ 94 (216)
T 2lem_A 15 NVYVDAVKDSGRDYVSQFESSSLGQQLNLNLLENWDTLGSTVSQLQERLGPLTRDFWDNLEKETDWVRQEMNKDLEEVKQ 94 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhccHHHHHH
Confidence 3444555555554444444322 33 355668888888888888888875322211 1 11235556666777776
Q ss_pred HHhhhhhh-hhhhHHHHHHHHHHHHHhHH
Q 012561 325 ELQQVRDD-RDHQLSQVQALTAEVIKHKE 352 (461)
Q Consensus 325 ELqqvRdD-RDr~~~QvqsL~aE~~~ykE 352 (461)
.|...+++ +.+.-..+..|...+.-|-+
T Consensus 95 ~l~py~~el~~~~~~~~e~lr~~L~Py~~ 123 (216)
T 2lem_A 95 KVQPYLDEFQKKWKEDVELYRQKASPQGA 123 (216)
T ss_dssp HTTTTCCHHHHHHHHHHHHHHHHTSCHHH
T ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 66665544 22233344445544444444
No 176
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=25.53 E-value=3.5e+02 Score=23.89 Aligned_cols=37 Identities=19% Similarity=0.181 Sum_probs=18.5
Q ss_pred hhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHH
Q 012561 290 QYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVEL 326 (461)
Q Consensus 290 ~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~EL 326 (461)
.+.=|+.||+.+.-+..++--|--.-..=|..|+.-|
T Consensus 26 ~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL 62 (121)
T 3mq7_A 26 VTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASL 62 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666665555444444444444444444444
No 177
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=25.21 E-value=1.8e+02 Score=28.12 Aligned_cols=61 Identities=20% Similarity=0.173 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHH
Q 012561 114 NMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQE 184 (461)
Q Consensus 114 qM~dyIKrLr~CIrWfqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe 184 (461)
-+++| +.-|-+-|.+-++.|-...+.+...++.... .....++.|.+.+.+|+..++.|+.
T Consensus 146 ~~~~y---~~~~Y~~fl~~~d~~~~~~~e~~~~~~~~~n-------~~~~eie~L~~~~~~L~eEi~~Le~ 206 (315)
T 2ve7_A 146 LFLDY---TIKCYESFMSGADSFDEMNAELQSKLKDLFN-------VDAFKLESLEAKNRALNEQIARLEQ 206 (315)
T ss_dssp HHHHH---HHHHHHHHHHTCSCCHHHHHHHHHHHHHHHT-------CCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH---HHHHHHHHHhCCcchhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666 5568887877778888777777766654321 1133456666666666666666644
No 178
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=23.73 E-value=92 Score=26.22 Aligned_cols=28 Identities=18% Similarity=0.488 Sum_probs=13.9
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHhHhhHH
Q 012561 279 AIVENLSTLRGQYISLQEQLSTYKASQD 306 (461)
Q Consensus 279 tivEnls~LrG~~~SLq~QL~~skaSq~ 306 (461)
.+.|-|..+|.-|.++-.+..+.+...+
T Consensus 11 Rl~ELLD~ir~Efe~~~~e~~~~k~q~~ 38 (92)
T 3vp9_A 11 KLNELLDAIRQEFLQVSQEANTYRLQNQ 38 (92)
T ss_dssp ------CCTTTTTTTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3456666777777776666665554443
No 179
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=23.63 E-value=1.3e+02 Score=26.49 Aligned_cols=56 Identities=14% Similarity=0.206 Sum_probs=28.3
Q ss_pred HHHHHHHHhhh-hhhhhhhHHHHHHHHH-----HHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHH
Q 012561 319 VASMRVELQQV-RDDRDHQLSQVQALTA-----EVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAA 381 (461)
Q Consensus 319 v~~LR~ELqqv-RdDRDr~~~QvqsL~a-----E~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A 381 (461)
...|+.||++. +..|..-+..+....+ |++-|.........+ ..+|+.|+..|..|
T Consensus 11 ~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDlsENaeY~aak~~q~~~-------e~rI~~L~~~L~~A 72 (158)
T 2p4v_A 11 YEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREI-------DRRVRYLTKCMENL 72 (158)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCHHHHHHHHHHHHH-------HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccchhHHHHHHHHHHH-------HHHHHHHHHHHhhC
Confidence 35677777777 4456655555544332 456665522222222 22555565555544
No 180
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=23.51 E-value=4.5e+02 Score=24.44 Aligned_cols=168 Identities=15% Similarity=0.206 Sum_probs=83.7
Q ss_pred hHHhhHhHHHHHHHHH-HHHHHHHHhhhh---hHHH--HHHHHHHHHHHHhhHHHHHHHHHch-HHHHHHHHHHHH----
Q 012561 108 YKERCENMMDYIKRLR-LCIKWFQELEGD---YAFE--HERLRNALELSEQKCAEMELALRNK-EEELNLIIVELR---- 176 (461)
Q Consensus 108 yKgr~EqM~dyIKrLr-~CIrWfqelE~~---y~~E--qekL~~~Le~~ek~~~e~E~~lk~k-~eEL~~~i~ELr---- 176 (461)
|++|.+-=.+|-|+|+ +|-+|...++.+ ..+. -..+.++++..-..|..+-..|.+. ++.|.....+.+
T Consensus 43 ~keRa~iE~eYak~L~kLakk~~~~~~~~~~~gtl~~aw~~~~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~e~~~k~~ 122 (337)
T 2x3v_A 43 VQERAKIEKAYAQQLTDWAKRWRQLIEKGPQYGSLERAWGAMMTEADKVSELHQEVKNSLLNEDLEKVKNWQKDAYHKQI 122 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555567777775 455565533211 1111 1244455555555665555555443 355555544431
Q ss_pred ----HHHHHHHHHHhHHHhhHHHHHHh-------h----HHHHHHHHHHHHHHh--hh-HHHHHHHHHHHHHHHHHhHhH
Q 012561 177 ----KSFASLQEKLAKEESDKLAALDS-------L----AREKETRLNMERSHA--SL-SEDLGKAQEELQSANQRIASI 238 (461)
Q Consensus 177 ----~~~~SLqe~L~keeseKl~a~~s-------~----~kEkEaR~~~E~~~~--~L-seeL~k~q~E~~~anqqi~sl 238 (461)
+..-.++..+.+...+...+... | ..+..|+...++... ++ ..+++|++.-...+.+++...
T Consensus 123 ~~~~ke~K~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~c~e~e~a~~~~~~~~~~~~~s~k~~eK~~~k~~k~~~~~~~a 202 (337)
T 2x3v_A 123 MGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEERLAMTREMNSKTEQSVTPEQQKKLVDKVDKCRQDVQKT 202 (337)
T ss_dssp SCSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccccCcccCHHHHHHHHHHHHHHHHHHHHH
Confidence 01111222222222222111111 1 112223333333321 12 378899998888888888887
Q ss_pred HHHHHH-HHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHH
Q 012561 239 NDMYKL-LQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSA 279 (461)
Q Consensus 239 qDmyKR-LQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~t 279 (461)
.+-|+. ++.+|..-+.|.. ++...-+.+-.++.+.-.
T Consensus 203 ~~~Y~~~v~~~n~~~~~~~~----~~~~~~~~~Q~le~~Rl~ 240 (337)
T 2x3v_A 203 QEKYEKVLEDVGKTTPQYME----GMEQVFEQCQQFEEKRLV 240 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 776654 7777777556654 555555566555555533
No 181
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=23.47 E-value=2.2e+02 Score=20.75 Aligned_cols=23 Identities=4% Similarity=0.085 Sum_probs=15.0
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHH
Q 012561 356 SSEDLEARCASQSNQIRSLSDQL 378 (461)
Q Consensus 356 k~~~LEetCssQ~eqI~~Lq~QL 378 (461)
+.+.+.++|++.++.|..++.|+
T Consensus 34 ~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 34 KINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666777766554
No 182
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=23.42 E-value=72 Score=24.04 Aligned_cols=32 Identities=19% Similarity=0.433 Sum_probs=14.2
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 012561 318 EVASMRVELQQVRDDRDHQLSQVQALTAEVIK 349 (461)
Q Consensus 318 Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ 349 (461)
||+.||.|+...|..-+....+++.|.+.+.+
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44445554444444333334444444444433
No 183
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=23.38 E-value=3e+02 Score=25.60 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=22.2
Q ss_pred HHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHH
Q 012561 243 KLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVE 282 (461)
Q Consensus 243 KRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivE 282 (461)
..+|.=|.+|+.=|..|+.+.....+.+.+.-++|..+=.
T Consensus 135 ~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~ 174 (213)
T 1ik9_A 135 AENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALET 174 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455444555555555555666666666665533
No 184
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=23.04 E-value=3.4e+02 Score=28.23 Aligned_cols=16 Identities=31% Similarity=0.196 Sum_probs=12.3
Q ss_pred hhHHhHHhhhhhhhhh
Q 012561 422 EGEKLRKRLHNTILEL 437 (461)
Q Consensus 422 EGEkLRKKLHNTILEL 437 (461)
.|-.|+.+|-|-+++.
T Consensus 183 ~GarL~~aL~~~~~d~ 198 (485)
T 3qne_A 183 YGVFLNQALINYGLSF 198 (485)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6777888888887764
No 185
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=22.98 E-value=2.3e+02 Score=23.74 Aligned_cols=34 Identities=21% Similarity=0.131 Sum_probs=24.1
Q ss_pred hHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHH
Q 012561 153 KCAEMELALRNKEEELNLIIVELRKSFASLQEKL 186 (461)
Q Consensus 153 ~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L 186 (461)
.+.+....+..+.+++..-|.+|+.....|+..+
T Consensus 76 ~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (135)
T 1q06_A 76 HSADVKRRTLEKVAEIERHIEELQSMRDQLLALA 109 (135)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666777777788888888777777776654
No 186
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=22.95 E-value=3.1e+02 Score=27.90 Aligned_cols=33 Identities=6% Similarity=0.214 Sum_probs=19.1
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHh
Q 012561 279 AIVENLSTLRGQYISLQEQLSTYKASQDEAMRQ 311 (461)
Q Consensus 279 tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQ 311 (461)
.+|..+-.|-....+++.+++..++.++..-|+
T Consensus 28 ~~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~ 60 (455)
T 2dq0_A 28 KWVDEILKLDTEWRTKLKEINRLRHERNKIAVE 60 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666666666666666555544443
No 187
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=22.66 E-value=2e+02 Score=24.78 Aligned_cols=47 Identities=13% Similarity=0.344 Sum_probs=33.8
Q ss_pred hhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Q 012561 289 GQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQA 342 (461)
Q Consensus 289 G~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~Qvqs 342 (461)
|..-++|.+|..++.. -.+|..++.-|+..+..+..+||-+..-+..
T Consensus 4 ~s~~al~~eL~~~~~e-------i~~L~~ei~eLk~~ve~lEkERDFYF~KLRd 50 (106)
T 4e61_A 4 GSLVAIQAELTKSQET-------IGSLNEEIEQYKGTVSTLEIEREFYFNKLRD 50 (106)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888866654 3457777888888888888889977664443
No 188
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=22.56 E-value=2.3e+02 Score=24.10 Aligned_cols=65 Identities=18% Similarity=0.206 Sum_probs=44.0
Q ss_pred HhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHH-------HhhhhhhchhhhhhhhhhHHhHHHHHHHHHhH
Q 012561 349 KHKELAVSSEDLEARCASQSNQIRSLSDQLAAA-------EEKLEVSDLSALETKTEFEGQKKLINELRNHL 413 (461)
Q Consensus 349 ~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A-------~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RL 413 (461)
.|..|..++..||--|..=+++|..|+-+|.-. -.+-||--++.--+..-|...+..|..||.-.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~ 84 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAEC 84 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHH
Confidence 455566688899999999999999999999652 12345555555555555666667777776533
No 189
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=22.40 E-value=2e+02 Score=22.42 Aligned_cols=67 Identities=24% Similarity=0.281 Sum_probs=34.7
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHh
Q 012561 110 ERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLA 187 (461)
Q Consensus 110 gr~EqM~dyIKrLr~CIrWfqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~ 187 (461)
.|.+.|-+.+..||.+|-++. ..-+---.=|..++ +.=..|.....+|..-+.+|+.....|+.+|.
T Consensus 12 ~RR~~in~~f~~Lr~lvP~~~---~~k~sK~~iL~~Ai--------~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 12 KRRDHIKDSFHSLRDSVPSLQ---GEKASRAQILDKAT--------EYIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHTTSGGGT---TSCCCHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCC---CCCCCHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888888876542 10011111122222 22233444555555666666666666666654
No 190
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=22.00 E-value=80 Score=23.98 Aligned_cols=32 Identities=31% Similarity=0.423 Sum_probs=27.0
Q ss_pred hhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhH
Q 012561 274 EKEKSAIVENLSTLRGQYISLQEQLSTYKASQ 305 (461)
Q Consensus 274 eKEK~tivEnls~LrG~~~SLq~QL~~skaSq 305 (461)
++-|.+-+++|+.|..++..|++||=--|-+|
T Consensus 5 errr~e~ld~l~~LEkqF~~LkEqlY~ERl~q 36 (49)
T 2xus_A 5 ERRRSECVSEMLDLEKQFSELKEKLFRERLSQ 36 (49)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46688999999999999999999997666543
No 191
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=21.97 E-value=4.1e+02 Score=23.40 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=20.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHhhhh---hhchhhhhhhhhhHHh
Q 012561 363 RCASQSNQIRSLSDQLAAAEEKLE---VSDLSALETKTEFEGQ 402 (461)
Q Consensus 363 tCssQ~eqI~~Lq~QLa~A~eKLk---~aDlsa~etrte~E~Q 402 (461)
.+-.....|..|+.+|......|+ +++--+++....|+++
T Consensus 95 Rae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~ 137 (147)
T 2b9c_A 95 RAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENE 137 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHH
Confidence 333334445555555555555444 4555555556666654
No 192
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Probab=21.71 E-value=4e+02 Score=23.12 Aligned_cols=59 Identities=20% Similarity=0.211 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhH---HHHHHHHHhHHHHhhhhhhhHHhHHhhhhhhh
Q 012561 369 NQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQK---KLINELRNHLEDAEYKLIEGEKLRKRLHNTIL 435 (461)
Q Consensus 369 eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk---~~i~eLq~RLadaE~kiiEGEkLRKKLHNTIL 435 (461)
+-++-++.||+.+.+|++... ....++... .....|.+++-+-.++| ++|+.-|..+|+
T Consensus 41 ~K~rH~~~el~l~~~k~~~~~-----~~g~~e~~s~~~ek~~~le~k~Kk~~~kV---~Kl~~dl~~rI~ 102 (109)
T 2fcw_A 41 EKHNHYQKQLEIAHEKLRHAE-----SVGDGERVSRSREKHALLEGRTKELGYTV---KKHLQDLSGRIS 102 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HHTCTTTHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhh-----cccchhhhhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 356678888888877774432 111121111 11455556666555555 577777887776
No 193
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=21.34 E-value=4.5e+02 Score=23.66 Aligned_cols=61 Identities=18% Similarity=0.204 Sum_probs=34.7
Q ss_pred hhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHH----HHHHHhhhhhh
Q 012561 271 KRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVAS----MRVELQQVRDD 332 (461)
Q Consensus 271 ~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~----LR~ELqqvRdD 332 (461)
..++--|+.+-..++.|.+....+++||..+.-+++-.. ...+...++.. ||..|.=++++
T Consensus 24 s~~e~v~~~~~~y~~~l~~~a~~~~eqL~~s~l~~el~~-l~~e~~~~l~~~~~~l~~qL~P~~~e 88 (191)
T 1nfn_A 24 QRWELALGRFWDYLRWVQTLSEQVQEELLSSQVTQELRA-LMDETMKELKAYKSELEEQLTPVAEE 88 (191)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCHHHHHHHTSSHHHHHHHH-HHHHHHHHHHHHHHHHTTC-------
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH-HHHHHHHHHHHHHHHHHHhcchhHHH
Confidence 345666788888899999999999999966666644322 23333333333 55555444443
No 194
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=20.77 E-value=71 Score=29.67 Aligned_cols=41 Identities=22% Similarity=0.167 Sum_probs=28.8
Q ss_pred HHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHH
Q 012561 230 SANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESI 270 (461)
Q Consensus 230 ~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~ 270 (461)
...+=|.=+=|.|.+|++=|.-||+=|-+|+.|...+.+.+
T Consensus 142 ~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~ql 182 (184)
T 3w03_C 142 VIRELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQGRF 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444557778888888888888888888888664443
No 195
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=20.60 E-value=2.7e+02 Score=22.85 Aligned_cols=49 Identities=16% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhc------------hhhhhhhhhhHHhHHHHHHHHHhHHHH
Q 012561 368 SNQIRSLSDQLAAAEEKLEVSD------------LSALETKTEFEGQKKLINELRNHLEDA 416 (461)
Q Consensus 368 ~eqI~~Lq~QLa~A~eKLk~aD------------lsa~etrte~E~Qk~~i~eLq~RLada 416 (461)
.+.|...+.||..|.-||+=+. -+..-.+.+...-+.+|.+|+.-|||+
T Consensus 11 q~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~ 71 (78)
T 2ic6_A 11 QDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADL 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 196
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=20.47 E-value=72 Score=23.14 Aligned_cols=28 Identities=36% Similarity=0.503 Sum_probs=22.5
Q ss_pred hhhhhhccHHHHHHHHhhhhhHHHHHHH
Q 012561 255 YNTKLQKDIDAAHESIKRGEKEKSAIVE 282 (461)
Q Consensus 255 YNSkLQaDl~~~~e~~~r~eKEK~tivE 282 (461)
=|-+||.|++.-.+.|.++..|-..+.|
T Consensus 8 ENekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 8 ENEKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 3779999999999999998887665544
No 197
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=20.12 E-value=1.6e+02 Score=23.60 Aligned_cols=40 Identities=20% Similarity=0.132 Sum_probs=28.3
Q ss_pred HHHhhHHHHHHH---HHchHHHHHHHHHHHHHHHHHHHHHHhH
Q 012561 149 LSEQKCAEMELA---LRNKEEELNLIIVELRKSFASLQEKLAK 188 (461)
Q Consensus 149 ~~ek~~~e~E~~---lk~k~eEL~~~i~ELr~~~~SLqe~L~k 188 (461)
..+.+..++|.. ...-+++||.++.+-.+.++.|+.++.-
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~ 53 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRH 53 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555543 3466889999999999999888887743
No 198
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=20.09 E-value=1e+02 Score=24.11 Aligned_cols=7 Identities=29% Similarity=0.278 Sum_probs=2.5
Q ss_pred hhhHHHH
Q 012561 291 YISLQEQ 297 (461)
Q Consensus 291 ~~SLq~Q 297 (461)
+..|+.+
T Consensus 70 ~~~L~~~ 76 (83)
T 1nkp_B 70 NALLEQQ 76 (83)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
Done!