Query 012562
Match_columns 461
No_of_seqs 203 out of 2392
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 03:56:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012562.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012562hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.7 1.2E-17 2.7E-22 147.6 0.3 167 18-209 98-272 (419)
2 KOG4341 F-box protein containi 99.5 7.2E-16 1.6E-20 142.6 -3.3 345 14-420 67-434 (483)
3 smart00579 FBD domain in FBox 99.4 1.6E-12 3.4E-17 94.6 7.9 71 380-450 1-72 (72)
4 PLN00113 leucine-rich repeat r 99.2 4.2E-12 9.1E-17 139.8 5.1 219 121-365 93-318 (968)
5 PLN00113 leucine-rich repeat r 99.2 1.9E-11 4.2E-16 134.6 5.8 142 121-273 118-267 (968)
6 PF08387 FBD: FBD; InterPro: 99.2 4.6E-11 1E-15 79.6 5.1 50 371-421 1-51 (51)
7 KOG4194 Membrane glycoprotein 99.0 1.3E-10 2.8E-15 112.4 0.6 128 141-276 98-231 (873)
8 KOG4194 Membrane glycoprotein 98.9 1.4E-10 3E-15 112.2 0.0 219 122-366 150-403 (873)
9 PF12937 F-box-like: F-box-lik 98.8 5.7E-09 1.2E-13 68.7 3.3 36 18-53 1-36 (47)
10 cd00116 LRR_RI Leucine-rich re 98.6 2.7E-09 5.9E-14 102.2 -3.2 15 351-365 217-231 (319)
11 cd00116 LRR_RI Leucine-rich re 98.5 8.6E-09 1.9E-13 98.7 -1.3 61 143-209 79-149 (319)
12 PLN03210 Resistant to P. syrin 98.5 9.7E-08 2.1E-12 106.3 6.6 122 122-255 590-714 (1153)
13 KOG3207 Beta-tubulin folding c 98.4 3E-08 6.5E-13 93.2 -0.6 110 143-260 170-286 (505)
14 PLN03210 Resistant to P. syrin 98.4 2.1E-07 4.6E-12 103.6 6.1 142 121-273 558-711 (1153)
15 KOG3207 Beta-tubulin folding c 98.4 1.3E-08 2.8E-13 95.6 -5.2 208 143-366 119-337 (505)
16 KOG1909 Ran GTPase-activating 98.3 1.8E-07 4E-12 85.6 2.2 183 168-367 89-282 (382)
17 PF00646 F-box: F-box domain; 98.3 1.5E-07 3.3E-12 62.2 1.2 37 18-54 3-39 (48)
18 smart00256 FBOX A Receptor for 98.3 1.1E-06 2.4E-11 55.9 4.0 34 21-54 1-34 (41)
19 KOG2982 Uncharacterized conser 98.3 7.5E-07 1.6E-11 80.0 3.8 245 141-409 41-307 (418)
20 KOG0444 Cytoskeletal regulator 98.2 5.1E-09 1.1E-13 102.4 -12.1 206 133-366 91-302 (1255)
21 KOG0444 Cytoskeletal regulator 98.2 3.3E-08 7.2E-13 96.8 -6.7 177 135-337 22-206 (1255)
22 KOG2120 SCF ubiquitin ligase, 98.0 1E-07 2.2E-12 85.4 -5.9 100 146-255 186-296 (419)
23 KOG1909 Ran GTPase-activating 98.0 1.3E-06 2.8E-11 80.2 0.3 202 144-366 29-252 (382)
24 KOG0618 Serine/threonine phosp 98.0 2.4E-07 5.3E-12 94.8 -6.0 154 111-276 256-417 (1081)
25 PF14580 LRR_9: Leucine-rich r 97.9 6.2E-07 1.3E-11 76.6 -2.8 124 122-254 20-149 (175)
26 PRK15387 E3 ubiquitin-protein 97.9 2.5E-05 5.5E-10 81.8 7.8 114 121-258 201-315 (788)
27 PF14580 LRR_9: Leucine-rich r 97.9 6.7E-06 1.4E-10 70.3 2.8 65 296-366 85-151 (175)
28 PRK15387 E3 ubiquitin-protein 97.8 2.3E-05 5E-10 82.1 5.7 51 122-183 223-274 (788)
29 PRK15370 E3 ubiquitin-protein 97.8 1.3E-05 2.7E-10 84.3 3.2 245 121-420 178-423 (754)
30 KOG4341 F-box protein containi 97.7 8E-07 1.7E-11 83.4 -6.6 257 145-420 138-409 (483)
31 PRK15370 E3 ubiquitin-protein 97.7 1.4E-05 3.1E-10 84.0 1.5 95 121-231 199-294 (754)
32 KOG3665 ZYG-1-like serine/thre 97.4 5.4E-05 1.2E-09 78.9 1.0 61 145-210 122-186 (699)
33 KOG0617 Ras suppressor protein 97.4 2.9E-06 6.3E-11 70.2 -6.8 78 122-208 34-113 (264)
34 KOG3665 ZYG-1-like serine/thre 97.3 6.8E-05 1.5E-09 78.2 0.7 119 290-420 164-283 (699)
35 KOG1259 Nischarin, modulator o 97.3 9.2E-05 2E-09 66.9 1.0 175 168-367 211-411 (490)
36 PF07723 LRR_2: Leucine Rich R 97.2 0.00052 1.1E-08 38.3 3.0 26 172-197 1-26 (26)
37 KOG0617 Ras suppressor protein 97.2 5.1E-06 1.1E-10 68.8 -7.4 155 141-313 29-187 (264)
38 PF13855 LRR_8: Leucine rich r 97.2 0.00012 2.6E-09 51.0 0.5 56 145-207 1-59 (61)
39 COG5238 RNA1 Ran GTPase-activa 97.0 0.00035 7.6E-09 62.4 1.9 114 243-365 155-282 (388)
40 KOG0618 Serine/threonine phosp 96.9 1.7E-05 3.6E-10 81.8 -7.8 20 136-155 301-320 (1081)
41 KOG4237 Extracellular matrix p 96.7 6.3E-05 1.4E-09 70.5 -4.9 81 244-338 273-356 (498)
42 KOG0472 Leucine-rich repeat pr 96.7 6.6E-06 1.4E-10 77.0 -11.8 177 135-338 104-285 (565)
43 PLN03150 hypothetical protein; 96.7 0.00092 2E-08 69.8 2.3 100 147-255 420-525 (623)
44 KOG1947 Leucine rich repeat pr 96.6 9.5E-05 2.1E-09 75.0 -5.4 40 15-54 42-81 (482)
45 KOG2123 Uncharacterized conser 96.5 0.00016 3.4E-09 64.8 -4.2 101 246-363 20-125 (388)
46 KOG4237 Extracellular matrix p 96.4 6.6E-05 1.4E-09 70.4 -7.1 57 122-184 68-129 (498)
47 KOG1644 U2-associated snRNP A' 96.4 0.0052 1.1E-07 52.8 4.8 15 240-254 135-149 (233)
48 PF13855 LRR_8: Leucine rich r 96.1 0.0046 9.9E-08 42.9 2.5 55 122-182 2-60 (61)
49 KOG1947 Leucine rich repeat pr 96.0 0.0025 5.5E-08 64.5 0.9 69 291-364 261-330 (482)
50 COG4886 Leucine-rich repeat (L 95.9 0.0014 3.1E-08 64.7 -1.0 169 143-339 114-288 (394)
51 PF12799 LRR_4: Leucine Rich r 95.9 0.0032 7E-08 40.3 0.8 34 172-208 2-35 (44)
52 KOG1259 Nischarin, modulator o 95.8 0.00038 8.2E-09 63.1 -4.9 132 169-315 282-415 (490)
53 PF12799 LRR_4: Leucine Rich r 95.8 0.006 1.3E-07 39.0 1.7 36 145-185 1-38 (44)
54 KOG4658 Apoptotic ATPase [Sign 95.7 0.0013 2.9E-08 70.6 -2.4 16 295-310 713-728 (889)
55 KOG2982 Uncharacterized conser 95.4 0.011 2.3E-07 53.9 2.7 87 265-365 70-156 (418)
56 KOG2739 Leucine-rich acidic nu 95.4 0.002 4.3E-08 57.5 -2.1 107 143-254 41-152 (260)
57 PLN03150 hypothetical protein; 95.3 0.01 2.2E-07 62.2 2.5 81 172-256 419-501 (623)
58 KOG1644 U2-associated snRNP A' 95.2 0.022 4.8E-07 49.0 3.6 83 143-231 62-151 (233)
59 COG4886 Leucine-rich repeat (L 95.0 0.0053 1.2E-07 60.6 -0.5 168 122-311 117-289 (394)
60 KOG2123 Uncharacterized conser 94.9 0.00074 1.6E-08 60.6 -6.1 35 220-254 63-97 (388)
61 KOG1859 Leucine-rich repeat pr 94.9 0.0018 3.9E-08 65.7 -4.1 61 93-155 55-119 (1096)
62 KOG0472 Leucine-rich repeat pr 94.9 0.0039 8.4E-08 59.0 -1.8 60 141-208 431-492 (565)
63 KOG4658 Apoptotic ATPase [Sign 94.8 0.079 1.7E-06 57.3 7.5 39 167-207 567-605 (889)
64 PLN03215 ascorbic acid mannose 93.1 0.077 1.7E-06 50.9 3.2 37 18-54 4-41 (373)
65 KOG0281 Beta-TrCP (transducin 93.0 0.065 1.4E-06 49.6 2.4 37 15-51 72-112 (499)
66 KOG2997 F-box protein FBX9 [Ge 92.2 0.13 2.8E-06 47.3 3.1 36 16-51 105-145 (366)
67 COG5238 RNA1 Ran GTPase-activa 90.2 0.21 4.6E-06 45.2 2.5 188 144-366 29-253 (388)
68 KOG2739 Leucine-rich acidic nu 89.8 0.13 2.8E-06 46.2 0.8 38 170-208 90-127 (260)
69 KOG1859 Leucine-rich repeat pr 89.5 0.0062 1.3E-07 62.0 -8.5 34 145-183 187-221 (1096)
70 KOG0531 Protein phosphatase 1, 88.7 0.05 1.1E-06 54.1 -2.9 103 141-254 91-195 (414)
71 PF13013 F-box-like_2: F-box-l 86.5 1.2 2.6E-05 34.7 4.2 30 17-46 21-50 (109)
72 PRK15386 type III secretion pr 85.6 1.5 3.3E-05 42.9 5.3 131 121-274 52-185 (426)
73 KOG0531 Protein phosphatase 1, 85.2 0.15 3.3E-06 50.6 -1.7 61 167-231 91-151 (414)
74 KOG0532 Leucine-rich repeat (L 84.2 0.043 9.2E-07 54.6 -5.8 65 136-208 112-177 (722)
75 KOG3864 Uncharacterized conser 83.5 0.6 1.3E-05 40.5 1.4 69 135-208 91-162 (221)
76 KOG0274 Cdc4 and related F-box 82.9 0.64 1.4E-05 47.5 1.6 38 14-51 104-141 (537)
77 PRK15386 type III secretion pr 82.5 1.6 3.5E-05 42.7 4.1 54 169-230 50-104 (426)
78 PF13516 LRR_6: Leucine Rich r 78.9 0.92 2E-05 24.4 0.7 20 171-191 2-21 (24)
79 KOG3864 Uncharacterized conser 69.9 0.23 4.9E-06 43.0 -4.8 78 175-254 105-185 (221)
80 smart00367 LRR_CC Leucine-rich 61.4 4.8 0.0001 22.0 1.0 11 171-181 2-12 (26)
81 KOG4579 Leucine-rich repeat (L 60.6 1.2 2.5E-05 36.3 -2.1 35 145-184 77-113 (177)
82 KOG4308 LRR-containing protein 58.1 0.09 1.9E-06 52.8 -11.0 41 299-340 262-302 (478)
83 smart00368 LRR_RI Leucine rich 54.7 6.5 0.00014 22.1 0.8 20 171-191 2-21 (28)
84 PF00560 LRR_1: Leucine Rich R 49.6 9.4 0.0002 19.9 0.9 9 147-155 2-10 (22)
85 PF09372 PRANC: PRANC domain; 49.6 13 0.00028 28.3 2.0 25 16-40 70-94 (97)
86 KOG4579 Leucine-rich repeat (L 48.1 4.7 0.0001 33.0 -0.6 56 145-208 53-111 (177)
87 KOG0532 Leucine-rich repeat (L 42.4 3.8 8.2E-05 41.4 -2.3 100 122-231 144-245 (722)
88 smart00370 LRR Leucine-rich re 40.1 15 0.00033 19.9 0.8 13 171-183 2-14 (26)
89 smart00369 LRR_TYP Leucine-ric 40.1 15 0.00033 19.9 0.8 13 171-183 2-14 (26)
90 KOG3926 F-box proteins [Amino 37.4 12 0.00025 34.0 0.2 48 16-63 200-254 (332)
91 PF13306 LRR_5: Leucine rich r 32.8 31 0.00067 27.3 2.0 63 138-206 4-67 (129)
92 KOG3763 mRNA export factor TAP 31.9 38 0.00083 34.3 2.7 67 290-361 235-307 (585)
93 KOG4408 Putative Mg2+ and Co2+ 25.1 24 0.00051 33.2 -0.0 39 18-56 8-46 (386)
94 smart00365 LRR_SD22 Leucine-ri 24.0 39 0.00084 18.7 0.7 13 171-183 2-14 (26)
95 KOG3763 mRNA export factor TAP 22.7 44 0.00095 33.9 1.3 12 170-181 243-254 (585)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.2e-17 Score=147.61 Aligned_cols=167 Identities=25% Similarity=0.289 Sum_probs=110.2
Q ss_pred CCCCChHHHHHHhcCCChhHHHHHHHHhHhHHHhhccC---CeeEeecCCcCCCccchhcHhHHHHHHHHHHhcCCCCCc
Q 012562 18 LCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSV---PYLSFDMSTISSNPQEIWSHEKFKDFVNWVLLSQSGSVS 94 (461)
Q Consensus 18 is~LPd~iL~~Ils~Lp~~d~~~~s~vskrWr~lw~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~ 94 (461)
+..|||||+..||+.|+.++..+++.|||||.++-..- ..++....... .+...+.+ ++ .
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~------------p~~l~~l~-~r----g 160 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIH------------PDVLGRLL-SR----G 160 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccC------------hhHHHHHH-hC----C
Confidence 67899999999999999999999999999999753221 11333333322 11222222 22 2
Q ss_pred ccEEEEEEeccCCchhHHHHHHHHHhcCCeEEEEEEcceeee-CCCCcccCCCccEEEeceeccccccccCC---Ccccc
Q 012562 95 IQRFRLYCLSYANDYTVYRWVCAVARRNVQVFDLTVYGEVTE-LPHCLVTCESLEALKLACRQLRMCVLKLP---FSVGF 170 (461)
Q Consensus 95 i~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~-lp~~l~~~~~L~~L~L~~~~~~~~~l~~~---~~~~l 170 (461)
|..|++.-... ++.++..-. ...+.+++++||+....... +--.+..|+.|+.|.|.+. .+.+| ....-
T Consensus 161 V~v~Rlar~~~-~~prlae~~-~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~-----~LdD~I~~~iAkN 233 (419)
T KOG2120|consen 161 VIVFRLARSFM-DQPRLAEHF-SPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGL-----RLDDPIVNTIAKN 233 (419)
T ss_pred eEEEEcchhhh-cCchhhhhh-hhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhcccccc-----ccCcHHHHHHhcc
Confidence 44444432211 112222211 22345799999966532222 2222335999999999999 88774 45567
Q ss_pred CcccEEEeeeEE-EcChhhHHHHhhcCccccceEEeeeec
Q 012562 171 SRLKSLDLHNVE-FLDHNLLHKFVSSRRLLEKLILKSCSF 209 (461)
Q Consensus 171 ~~L~~L~L~~~~-~~~~~~l~~l~~~cp~Le~L~L~~c~~ 209 (461)
.+|+.|+|+.+. ++.. +++-++++|..|..|.|+.|..
T Consensus 234 ~~L~~lnlsm~sG~t~n-~~~ll~~scs~L~~LNlsWc~l 272 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTEN-ALQLLLSSCSRLDELNLSWCFL 272 (419)
T ss_pred ccceeeccccccccchh-HHHHHHHhhhhHhhcCchHhhc
Confidence 899999999764 6666 8999999999999999999963
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.50 E-value=7.2e-16 Score=142.58 Aligned_cols=345 Identities=18% Similarity=0.182 Sum_probs=179.5
Q ss_pred CCCCCC-CCChHHHHHHhcCCChhHHHHHHHHhHhHHHh------hccCCeeEeecCCcCCCccchhcHhHHHHHHHHHH
Q 012562 14 DGDRLC-SLPEPVIHQIFSFMETIDVVRASAVSRKWRYL------WLSVPYLSFDMSTISSNPQEIWSHEKFKDFVNWVL 86 (461)
Q Consensus 14 ~~D~is-~LPd~iL~~Ils~Lp~~d~~~~s~vskrWr~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l 86 (461)
..+.++ .||+|++..|||+|.++...+++.+|+-|..+ |.++.-.+|-.+.- -..|..++
T Consensus 67 ~~~~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~-------------g~VV~~~~ 133 (483)
T KOG4341|consen 67 DNNSISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVD-------------GGVVENMI 133 (483)
T ss_pred hcccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCC-------------CcceehHh
Confidence 344444 69999999999999999999999999999975 44433222211110 12234444
Q ss_pred hcCCCCCcccEEEEEEeccCCchhHHHHHHHHHhcCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC--
Q 012562 87 LSQSGSVSIQRFRLYCLSYANDYTVYRWVCAVARRNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-- 164 (461)
Q Consensus 87 ~~~~~~~~i~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-- 164 (461)
.+..| .+++++++......+..+.... ..|+++++|.+.+|. .+.+
T Consensus 134 ~Rcgg--~lk~LSlrG~r~v~~sslrt~~--------------------------~~CpnIehL~l~gc~----~iTd~s 181 (483)
T KOG4341|consen 134 SRCGG--FLKELSLRGCRAVGDSSLRTFA--------------------------SNCPNIEHLALYGCK----KITDSS 181 (483)
T ss_pred hhhcc--ccccccccccccCCcchhhHHh--------------------------hhCCchhhhhhhcce----eccHHH
Confidence 44444 7888888877644332222111 135555555555551 2222
Q ss_pred --CCccccCcccEEEeeeE-EEcChhhHHHHhhcCccccceEEeeee-cC--CceEEEEecCCcCeEEEeccCCCCCCCe
Q 012562 165 --PFSVGFSRLKSLDLHNV-EFLDHNLLHKFVSSRRLLEKLILKSCS-FR--DFKILDISSTSLKSLTLDNFGGDESGNY 238 (461)
Q Consensus 165 --~~~~~l~~L~~L~L~~~-~~~~~~~l~~l~~~cp~Le~L~L~~c~-~~--~~~~~~i~~~~L~~L~l~~~~~~~~~~~ 238 (461)
.-...+++|+.|.|..+ .+++. .+..+..+||+|++|.++.|. +. +++...-.+..++.+...+|.-.+.+.+
T Consensus 182 ~~sla~~C~~l~~l~L~~c~~iT~~-~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l 260 (483)
T KOG4341|consen 182 LLSLARYCRKLRHLNLHSCSSITDV-SLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEAL 260 (483)
T ss_pred HHHHHHhcchhhhhhhcccchhHHH-HHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHH
Confidence 11224555555555552 33333 555555556666666665554 11 1111112223344443333321000000
Q ss_pred E-EEEecCCeeeEEEecCCC-Cceee----eCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhh
Q 012562 239 K-VKIACPNLVSFNFLASWA-PDFAF----EDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLR 312 (461)
Q Consensus 239 ~-~~~~~p~L~~L~l~~~~~-~~~~~----~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~ 312 (461)
. +.-.++.+..+++..+.. .+..+ ..+..|+.+..+-. .+.+ +..+..+..++++|+.|.+.++..
T Consensus 261 ~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~----t~~~---d~~l~aLg~~~~~L~~l~l~~c~~- 332 (483)
T KOG4341|consen 261 LKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSC----TDIT---DEVLWALGQHCHNLQVLELSGCQQ- 332 (483)
T ss_pred HHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCC----CCCc---hHHHHHHhcCCCceEEEeccccch-
Confidence 0 111222233333222100 00000 01222333333111 0111 456788888999999999998752
Q ss_pred hhccccccccCCcccCcccEEEEEEeCCCcc-hhhHhhhhccCCCcceEEEEeccCCCccccc-cCcCccccccceeEEE
Q 012562 313 FHFVLEERGFIPNSFNYLKSLVLSVSMADWV-VPSIISLLNCSPNLEALTIYFEGEDCDDWKI-SNKSIFCLTCHLKTVE 390 (461)
Q Consensus 313 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~l~~~~lL~~~p~L~~L~l~~~~~~~~~~~~-~~~~~~~~~~~Lk~v~ 390 (461)
+.... +..+....+.|+.|++..++...+ .+.. +-.+||.|++|.++.+......... ... ..|...+|..++
T Consensus 333 -fsd~~-ft~l~rn~~~Le~l~~e~~~~~~d~tL~s--ls~~C~~lr~lslshce~itD~gi~~l~~-~~c~~~~l~~lE 407 (483)
T KOG4341|consen 333 -FSDRG-FTMLGRNCPHLERLDLEECGLITDGTLAS--LSRNCPRLRVLSLSHCELITDEGIRHLSS-SSCSLEGLEVLE 407 (483)
T ss_pred -hhhhh-hhhhhcCChhhhhhcccccceehhhhHhh--hccCCchhccCChhhhhhhhhhhhhhhhh-ccccccccceee
Confidence 11111 233333567999999988876333 3444 7899999999999977632111111 111 346677888888
Q ss_pred EEeecCChhHHHHHHHHHhcCcCcceEEEE
Q 012562 391 LIHVAGDENELELVRFLLKNGHVLKKLSFS 420 (461)
Q Consensus 391 i~~~~g~~~e~~~~~~ll~~a~~Le~~~i~ 420 (461)
+.+-.+.. -+..+ .+.+++.||++.+.
T Consensus 408 L~n~p~i~--d~~Le-~l~~c~~Leri~l~ 434 (483)
T KOG4341|consen 408 LDNCPLIT--DATLE-HLSICRNLERIELI 434 (483)
T ss_pred ecCCCCch--HHHHH-HHhhCcccceeeee
Confidence 88765432 23333 35789999997777
No 3
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=99.39 E-value=1.6e-12 Score=94.58 Aligned_cols=71 Identities=37% Similarity=0.611 Sum_probs=62.9
Q ss_pred cccccceeEEEEEeecCChhHHHHHHHHHhcCcCcceEEEEccCChh-hHHHHHHHHhcCCCCCCcceEEEe
Q 012562 380 FCLTCHLKTVELIHVAGDENELELVRFLLKNGHVLKKLSFSWMEDVE-NRKEIISRIMKLPRSSSNVALEFL 450 (461)
Q Consensus 380 ~~~~~~Lk~v~i~~~~g~~~e~~~~~~ll~~a~~Le~~~i~~~~~~~-~~~~~~~~l~~~~r~s~~~~~~~~ 450 (461)
.|+.++||+|+|.+|.|...|++|++|+++||+.||+|+|..+.... +..++.++|..++|||++|++.|.
T Consensus 1 ~cl~~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~~~~~~~~i~~~L~~~~~aS~~c~i~~~ 72 (72)
T smart00579 1 ECLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDDEKLEILKELLSLPRASSSCQVQFL 72 (72)
T ss_pred CcchheEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeecCCccHHHHHHHHHHhCcCCCCceEEEeC
Confidence 47889999999999999999999999999999999999999875543 335688999999999999999873
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.25 E-value=4.2e-12 Score=139.82 Aligned_cols=219 Identities=21% Similarity=0.115 Sum_probs=125.3
Q ss_pred cCCeEEEEEEcceeeeCCCCcc-cCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCcc
Q 012562 121 RNVQVFDLTVYGEVTELPHCLV-TCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRL 198 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~ 198 (461)
+.++.|+|+.+.....+|..++ .+++|++|+|++| .+.. .....+++|++|+|.++.+++ .+...+.++++
T Consensus 93 ~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n-----~l~~~~p~~~l~~L~~L~Ls~n~~~~--~~p~~~~~l~~ 165 (968)
T PLN00113 93 PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN-----NFTGSIPRGSIPNLETLDLSNNMLSG--EIPNDIGSFSS 165 (968)
T ss_pred CCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC-----ccccccCccccCCCCEEECcCCcccc--cCChHHhcCCC
Confidence 5788888866654557887777 6888899988888 5543 223467888888888887764 34445677888
Q ss_pred ccceEEeeeecCCceEEEEe-cCCcCeEEEeccCCCCCCCeEEE-EecCCeeeEEEecCCCC---ceeeeCCCCceEEEE
Q 012562 199 LEKLILKSCSFRDFKILDIS-STSLKSLTLDNFGGDESGNYKVK-IACPNLVSFNFLASWAP---DFAFEDLDSLQNAFI 273 (461)
Q Consensus 199 Le~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~~~-~~~p~L~~L~l~~~~~~---~~~~~~~~~L~~l~l 273 (461)
|+.|+|++|.+.+..+-.+. .++|++|.+.+|.+ .+.+.-. -.+++|+.|.+.++... +..+..+++|+.+++
T Consensus 166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l--~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 243 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL--VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL 243 (968)
T ss_pred CCEEECccCcccccCChhhhhCcCCCeeeccCCCC--cCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEEC
Confidence 88888888764432222222 36788888877764 2222111 25667777777764332 223456677777777
Q ss_pred EEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhcc
Q 012562 274 FFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNC 353 (461)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~ 353 (461)
..+.. ...+...+..+++|+.|.+..|.+... .+..+. .+++|++|+++.+........ .+..
T Consensus 244 ~~n~l---------~~~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~-~l~~L~~L~Ls~n~l~~~~p~---~~~~ 306 (968)
T PLN00113 244 VYNNL---------TGPIPSSLGNLKNLQYLFLYQNKLSGP----IPPSIF-SLQKLISLDLSDNSLSGEIPE---LVIQ 306 (968)
T ss_pred cCcee---------ccccChhHhCCCCCCEEECcCCeeecc----CchhHh-hccCcCEEECcCCeeccCCCh---hHcC
Confidence 43322 111233455666677777766643311 111122 344556665554432222211 3344
Q ss_pred CCCcceEEEEec
Q 012562 354 SPNLEALTIYFE 365 (461)
Q Consensus 354 ~p~L~~L~l~~~ 365 (461)
+++|+.|++..+
T Consensus 307 l~~L~~L~l~~n 318 (968)
T PLN00113 307 LQNLEILHLFSN 318 (968)
T ss_pred CCCCcEEECCCC
Confidence 555555555443
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.18 E-value=1.9e-11 Score=134.61 Aligned_cols=142 Identities=22% Similarity=0.215 Sum_probs=69.8
Q ss_pred cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC--C-CccccCcccEEEeeeEEEcChhhHHHHhhcCc
Q 012562 121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL--P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR 197 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~--~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp 197 (461)
.++++|+++.+.....+|. ..+++|++|+|++| .+.. | .+..+++|++|+|.++.+.+ .+...+.+++
T Consensus 118 ~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n-----~~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~ 188 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNN-----MLSGEIPNDIGSFSSLKVLDLGGNVLVG--KIPNSLTNLT 188 (968)
T ss_pred CCCCEEECcCCccccccCc--cccCCCCEEECcCC-----cccccCChHHhcCCCCCEEECccCcccc--cCChhhhhCc
Confidence 4677777755433333443 23556677777666 4332 2 34556666666666665543 2333345566
Q ss_pred cccceEEeeeecCCceEEEEe-cCCcCeEEEeccCCCCCCCeEEE-EecCCeeeEEEecCCCC---ceeeeCCCCceEEE
Q 012562 198 LLEKLILKSCSFRDFKILDIS-STSLKSLTLDNFGGDESGNYKVK-IACPNLVSFNFLASWAP---DFAFEDLDSLQNAF 272 (461)
Q Consensus 198 ~Le~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~~~-~~~p~L~~L~l~~~~~~---~~~~~~~~~L~~l~ 272 (461)
.|+.|+|.+|...+..+-.+. .++|+.|.+..|.+ .+.+.-. -.+++|++|++.++... +..+.++++|+.++
T Consensus 189 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l--~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 266 (968)
T PLN00113 189 SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL--SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLF 266 (968)
T ss_pred CCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc--CCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEE
Confidence 666666666643322111111 24566666655543 1111111 24455555555553221 12234455555555
Q ss_pred E
Q 012562 273 I 273 (461)
Q Consensus 273 l 273 (461)
+
T Consensus 267 L 267 (968)
T PLN00113 267 L 267 (968)
T ss_pred C
Confidence 5
No 6
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=99.17 E-value=4.6e-11 Score=79.64 Aligned_cols=50 Identities=44% Similarity=0.699 Sum_probs=45.3
Q ss_pred cccc-cCcCccccccceeEEEEEeecCChhHHHHHHHHHhcCcCcceEEEEc
Q 012562 371 DWKI-SNKSIFCLTCHLKTVELIHVAGDENELELVRFLLKNGHVLKKLSFSW 421 (461)
Q Consensus 371 ~~~~-~~~~~~~~~~~Lk~v~i~~~~g~~~e~~~~~~ll~~a~~Le~~~i~~ 421 (461)
+|++ ... |+|+.+|||.|++.+|.|...|++|++|+++||+.||+|+|.+
T Consensus 1 ~W~~~~~~-p~Cl~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~~ 51 (51)
T PF08387_consen 1 FWIEPSSV-PECLLSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTISF 51 (51)
T ss_pred CCCCCCCC-ccchhheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEEC
Confidence 4744 445 9999999999999999999999999999999999999999973
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.96 E-value=1.3e-10 Score=112.35 Aligned_cols=128 Identities=16% Similarity=0.104 Sum_probs=59.9
Q ss_pred cccCCCccEEEeceeccccccccC-CCcccc-CcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEe
Q 012562 141 LVTCESLEALKLACRQLRMCVLKL-PFSVGF-SRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDIS 218 (461)
Q Consensus 141 l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l-~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~ 218 (461)
+.++++|+.++|..+ .+.. |.+... .+|+.|+|.++.++.- -..-++..|.||.|+|+.|.+..+.....+
T Consensus 98 f~nl~nLq~v~l~~N-----~Lt~IP~f~~~sghl~~L~L~~N~I~sv--~se~L~~l~alrslDLSrN~is~i~~~sfp 170 (873)
T KOG4194|consen 98 FYNLPNLQEVNLNKN-----ELTRIPRFGHESGHLEKLDLRHNLISSV--TSEELSALPALRSLDLSRNLISEIPKPSFP 170 (873)
T ss_pred HhcCCcceeeeeccc-----hhhhcccccccccceeEEeeeccccccc--cHHHHHhHhhhhhhhhhhchhhcccCCCCC
Confidence 344566666666666 5544 444433 3466666666655542 122244556666666666544433333333
Q ss_pred c-CCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCC---CceeeeCCCCceEEEEEEE
Q 012562 219 S-TSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWA---PDFAFEDLDSLQNAFIFFD 276 (461)
Q Consensus 219 ~-~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~---~~~~~~~~~~L~~l~l~~~ 276 (461)
. .++++|.+..+.+.+.+.-. .-...+|..|.++.+.+ +...|+++|.|+.+++..+
T Consensus 171 ~~~ni~~L~La~N~It~l~~~~-F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 171 AKVNIKKLNLASNRITTLETGH-FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred CCCCceEEeecccccccccccc-ccccchheeeecccCcccccCHHHhhhcchhhhhhcccc
Confidence 2 45666666655532111110 01222455555544322 2223444555555555433
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.94 E-value=1.4e-10 Score=112.22 Aligned_cols=219 Identities=16% Similarity=0.111 Sum_probs=125.3
Q ss_pred CCeEEEEEEcceeeeCCCCccc-CCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCc
Q 012562 122 NVQVFDLTVYGEVTELPHCLVT-CESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR 197 (461)
Q Consensus 122 ~l~~L~l~~~~~~~~lp~~l~~-~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp 197 (461)
-++.|||+-+. ...+|..-+. -.++++|+|+++ .+.. ..+.+|.+|.+|.|+.+.++. --...+...|
T Consensus 150 alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N-----~It~l~~~~F~~lnsL~tlkLsrNritt--Lp~r~Fk~L~ 221 (873)
T KOG4194|consen 150 ALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASN-----RITTLETGHFDSLNSLLTLKLSRNRITT--LPQRSFKRLP 221 (873)
T ss_pred hhhhhhhhhch-hhcccCCCCCCCCCceEEeeccc-----cccccccccccccchheeeecccCcccc--cCHHHhhhcc
Confidence 47778885543 2334433333 468999999999 4444 567788899999999998876 3456677799
Q ss_pred cccceEEeeeecCCceEEEEe-cCCcCeEEEeccCCCCCC--------CeE---------------EEEecCCeeeEEEe
Q 012562 198 LLEKLILKSCSFRDFKILDIS-STSLKSLTLDNFGGDESG--------NYK---------------VKIACPNLVSFNFL 253 (461)
Q Consensus 198 ~Le~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~~~~~~--------~~~---------------~~~~~p~L~~L~l~ 253 (461)
.||.|+|..|.+.-.+.+... -++|+.|.+.++++.... .++ .......|+.|+++
T Consensus 222 ~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS 301 (873)
T KOG4194|consen 222 KLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLS 301 (873)
T ss_pred hhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccc
Confidence 999999998764333222222 267777777777631100 000 11223445555555
Q ss_pred cCCCCceee---eCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcc
Q 012562 254 ASWAPDFAF---EDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYL 330 (461)
Q Consensus 254 ~~~~~~~~~---~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L 330 (461)
.+.+..+.+ .-++.|++++++.+....- -..-+..+..|+.|.|+.|.++.+.++. +. .+.+|
T Consensus 302 ~NaI~rih~d~WsftqkL~~LdLs~N~i~~l---------~~~sf~~L~~Le~LnLs~Nsi~~l~e~a-f~----~lssL 367 (873)
T KOG4194|consen 302 YNAIQRIHIDSWSFTQKLKELDLSSNRITRL---------DEGSFRVLSQLEELNLSHNSIDHLAEGA-FV----GLSSL 367 (873)
T ss_pred hhhhheeecchhhhcccceeEeccccccccC---------ChhHHHHHHHhhhhcccccchHHHHhhH-HH----Hhhhh
Confidence 544433332 2356777777755543111 0112334455667777777666555443 11 34466
Q ss_pred cEEEEEEeCC----CcchhhHhhhhccCCCcceEEEEecc
Q 012562 331 KSLVLSVSMA----DWVVPSIISLLNCSPNLEALTIYFEG 366 (461)
Q Consensus 331 ~~L~l~~~~~----~~~~l~~~~lL~~~p~L~~L~l~~~~ 366 (461)
+.|+++.+.. ++. .. .+...|.|++|.+.++.
T Consensus 368 ~~LdLr~N~ls~~IEDa--a~--~f~gl~~LrkL~l~gNq 403 (873)
T KOG4194|consen 368 HKLDLRSNELSWCIEDA--AV--AFNGLPSLRKLRLTGNQ 403 (873)
T ss_pred hhhcCcCCeEEEEEecc--hh--hhccchhhhheeecCce
Confidence 7777655432 111 11 34557777777776654
No 9
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.77 E-value=5.7e-09 Score=68.69 Aligned_cols=36 Identities=36% Similarity=0.769 Sum_probs=31.6
Q ss_pred CCCCChHHHHHHhcCCChhHHHHHHHHhHhHHHhhc
Q 012562 18 LCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWL 53 (461)
Q Consensus 18 is~LPd~iL~~Ils~Lp~~d~~~~s~vskrWr~lw~ 53 (461)
|+.||+||+.+||++||.+|.++++.|||+|+.+..
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHC
Confidence 678999999999999999999999999999998753
No 10
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.60 E-value=2.7e-09 Score=102.17 Aligned_cols=15 Identities=27% Similarity=0.211 Sum_probs=7.8
Q ss_pred hccCCCcceEEEEec
Q 012562 351 LNCSPNLEALTIYFE 365 (461)
Q Consensus 351 L~~~p~L~~L~l~~~ 365 (461)
+..+|+|+.|++..+
T Consensus 217 ~~~~~~L~~L~ls~n 231 (319)
T cd00116 217 LASLKSLEVLNLGDN 231 (319)
T ss_pred hcccCCCCEEecCCC
Confidence 344555555555544
No 11
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.55 E-value=8.6e-09 Score=98.71 Aligned_cols=61 Identities=26% Similarity=0.211 Sum_probs=30.8
Q ss_pred cCCCccEEEeceeccccccccC---CCcccc---CcccEEEeeeEEEcChhhHHH---HhhcC-ccccceEEeeeec
Q 012562 143 TCESLEALKLACRQLRMCVLKL---PFSVGF---SRLKSLDLHNVEFLDHNLLHK---FVSSR-RLLEKLILKSCSF 209 (461)
Q Consensus 143 ~~~~L~~L~L~~~~~~~~~l~~---~~~~~l---~~L~~L~L~~~~~~~~~~l~~---l~~~c-p~Le~L~L~~c~~ 209 (461)
.+++|+.|+|++| .+.. +.+..+ ++|++|++.++.+++. .... .+..+ +.|++|++.+|.+
T Consensus 79 ~~~~L~~L~l~~~-----~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~-~~~~l~~~l~~~~~~L~~L~L~~n~l 149 (319)
T cd00116 79 KGCGLQELDLSDN-----ALGPDGCGVLESLLRSSSLQELKLNNNGLGDR-GLRLLAKGLKDLPPALEKLVLGRNRL 149 (319)
T ss_pred hcCceeEEEccCC-----CCChhHHHHHHHHhccCcccEEEeeCCccchH-HHHHHHHHHHhCCCCceEEEcCCCcC
Confidence 3556666666666 3321 111122 3366666666665543 2222 23334 6666666666653
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.54 E-value=9.7e-08 Score=106.32 Aligned_cols=122 Identities=19% Similarity=0.202 Sum_probs=65.3
Q ss_pred CCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC--CCccccCcccEEEeeeEEEcChhhHHHHhhcCccc
Q 012562 122 NVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL--PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLL 199 (461)
Q Consensus 122 ~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~--~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~L 199 (461)
.++.|.+..+. ...+|..+ ...+|+.|+|.++ .+.. .....+++|+.|+|.++.... .++. ++.+++|
T Consensus 590 ~Lr~L~~~~~~-l~~lP~~f-~~~~L~~L~L~~s-----~l~~L~~~~~~l~~Lk~L~Ls~~~~l~--~ip~-ls~l~~L 659 (1153)
T PLN03210 590 KLRLLRWDKYP-LRCMPSNF-RPENLVKLQMQGS-----KLEKLWDGVHSLTGLRNIDLRGSKNLK--EIPD-LSMATNL 659 (1153)
T ss_pred ccEEEEecCCC-CCCCCCcC-CccCCcEEECcCc-----cccccccccccCCCCCEEECCCCCCcC--cCCc-cccCCcc
Confidence 46666653321 34455543 4567888888777 5444 234567777777777654222 2222 4567777
Q ss_pred cceEEeeeecCCceEEEEe-cCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecC
Q 012562 200 EKLILKSCSFRDFKILDIS-STSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLAS 255 (461)
Q Consensus 200 e~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~ 255 (461)
+.|+|.+|.....-+..+. .++|+.|.+.+|.. .+.+...++.++|++|.++|+
T Consensus 660 e~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~--L~~Lp~~i~l~sL~~L~Lsgc 714 (1153)
T PLN03210 660 ETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCEN--LEILPTGINLKSLYRLNLSGC 714 (1153)
T ss_pred cEEEecCCCCccccchhhhccCCCCEEeCCCCCC--cCccCCcCCCCCCCEEeCCCC
Confidence 7777777642111111111 25677777766542 222222235566666666664
No 13
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=3e-08 Score=93.24 Aligned_cols=110 Identities=22% Similarity=0.108 Sum_probs=83.0
Q ss_pred cCCCccEEEeceeccccccccCC----CccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEe
Q 012562 143 TCESLEALKLACRQLRMCVLKLP----FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDIS 218 (461)
Q Consensus 143 ~~~~L~~L~L~~~~~~~~~l~~~----~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~ 218 (461)
.+++|+.|+|+.+ .+..| ....++.|++|.|.+|.++.. ++..++..||.|+.|+|..|. +...-..+
T Consensus 170 qLp~Le~LNls~N-----rl~~~~~s~~~~~l~~lK~L~l~~CGls~k-~V~~~~~~fPsl~~L~L~~N~--~~~~~~~~ 241 (505)
T KOG3207|consen 170 QLPSLENLNLSSN-----RLSNFISSNTTLLLSHLKQLVLNSCGLSWK-DVQWILLTFPSLEVLYLEANE--IILIKATS 241 (505)
T ss_pred hcccchhcccccc-----cccCCccccchhhhhhhheEEeccCCCCHH-HHHHHHHhCCcHHHhhhhccc--ccceecch
Confidence 3678999999998 65543 233689999999999999976 999999999999999999974 21111111
Q ss_pred ---cCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCce
Q 012562 219 ---STSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDF 260 (461)
Q Consensus 219 ---~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~ 260 (461)
..+|+.|+++++.+++.......-..|+|+.|.++.+....+
T Consensus 242 ~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si 286 (505)
T KOG3207|consen 242 TKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASI 286 (505)
T ss_pred hhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchh
Confidence 257999999999876666555555789999998887655443
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.44 E-value=2.1e-07 Score=103.60 Aligned_cols=142 Identities=17% Similarity=0.112 Sum_probs=87.7
Q ss_pred cCCeEEEEEEc------ceeeeCCCCcccC-CCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHH
Q 012562 121 RNVQVFDLTVY------GEVTELPHCLVTC-ESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKF 192 (461)
Q Consensus 121 ~~l~~L~l~~~------~~~~~lp~~l~~~-~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l 192 (461)
++++.|.+... .....+|..+... .+|+.|.+.++ .+.. |....+.+|++|+|.++.+.. +..-
T Consensus 558 ~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-----~l~~lP~~f~~~~L~~L~L~~s~l~~---L~~~ 629 (1153)
T PLN03210 558 RNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-----PLRCMPSNFRPENLVKLQMQGSKLEK---LWDG 629 (1153)
T ss_pred ccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-----CCCCCCCcCCccCCcEEECcCccccc---cccc
Confidence 46777777432 1234566665554 46999998887 5544 544567899999998876643 2333
Q ss_pred hhcCccccceEEeeeec-CCceEEEEecCCcCeEEEeccCCCCCCCeEEEE-ecCCeeeEEEecCCCC-ceee-eCCCCc
Q 012562 193 VSSRRLLEKLILKSCSF-RDFKILDISSTSLKSLTLDNFGGDESGNYKVKI-ACPNLVSFNFLASWAP-DFAF-EDLDSL 268 (461)
Q Consensus 193 ~~~cp~Le~L~L~~c~~-~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~-~~p~L~~L~l~~~~~~-~~~~-~~~~~L 268 (461)
+..+++|+.|+|++|.. ..+.. --..++|+.|.+.+|.. ...+...+ .+++|+.|.++++... .... .++++|
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~--L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL 706 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSS--LVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSL 706 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCC--ccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCC
Confidence 56789999999988642 11111 11247899999987763 22333223 6788999998874321 1111 145667
Q ss_pred eEEEE
Q 012562 269 QNAFI 273 (461)
Q Consensus 269 ~~l~l 273 (461)
+.+.+
T Consensus 707 ~~L~L 711 (1153)
T PLN03210 707 YRLNL 711 (1153)
T ss_pred CEEeC
Confidence 77766
No 15
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1.3e-08 Score=95.62 Aligned_cols=208 Identities=19% Similarity=0.125 Sum_probs=134.5
Q ss_pred cCCCccEEEeceeccccccccCC----CccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceE--EE
Q 012562 143 TCESLEALKLACRQLRMCVLKLP----FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKI--LD 216 (461)
Q Consensus 143 ~~~~L~~L~L~~~~~~~~~l~~~----~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~--~~ 216 (461)
+.+.|+...|.++ .+..+ ....|++++.|+|+.+-+..-..+-+++...|+||.|.|+.|....... ..
T Consensus 119 n~kkL~~IsLdn~-----~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~ 193 (505)
T KOG3207|consen 119 NLKKLREISLDNY-----RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT 193 (505)
T ss_pred hHHhhhheeecCc-----cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch
Confidence 3567888888888 55442 3456999999999999887765777888899999999999986332211 11
Q ss_pred EecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCce---eeeCCCCceEEEEEEEeecCCCCchhhHHHHHH
Q 012562 217 ISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDF---AFEDLDSLQNAFIFFDIIDRDERDNESCHILSK 293 (461)
Q Consensus 217 i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~ 293 (461)
-..++|+.|.+..|++...+...+....|+|+.|.+.++..... ....+..|++++|.-+.. . ......
T Consensus 194 ~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l------i--~~~~~~ 265 (505)
T KOG3207|consen 194 LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL------I--DFDQGY 265 (505)
T ss_pred hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc------c--cccccc
Confidence 23478999999999862111122445789999999988642211 123356688888843211 0 111223
Q ss_pred HHhcCCCccEEEEecchhhhhccccc-cccCCcccCcccEEEEEEeCC-CcchhhHhhhhccCCCcceEEEEecc
Q 012562 294 LLNELCEVKALKLSTAFLRFHFVLEE-RGFIPNSFNYLKSLVLSVSMA-DWVVPSIISLLNCSPNLEALTIYFEG 366 (461)
Q Consensus 294 ~l~~l~~l~~L~l~~~~~~~~~~~~~-~~~l~~~~~~L~~L~l~~~~~-~~~~l~~~~lL~~~p~L~~L~l~~~~ 366 (461)
....+++|+.|+++.+.+..+..... .......|++|+.|.+..+.. ++..+.. ++..++|+.|.+....
T Consensus 266 ~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~---l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 266 KVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNH---LRTLENLKHLRITLNY 337 (505)
T ss_pred ccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccch---hhccchhhhhhccccc
Confidence 44578888888888887765544321 111122688999999977654 5665553 4566777777765543
No 16
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.35 E-value=1.8e-07 Score=85.65 Aligned_cols=183 Identities=20% Similarity=0.205 Sum_probs=104.1
Q ss_pred cccCcccEEEeeeEEEcCh--hhHHHHhhcCccccceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEEEecC
Q 012562 168 VGFSRLKSLDLHNVEFLDH--NLLHKFVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACP 245 (461)
Q Consensus 168 ~~l~~L~~L~L~~~~~~~~--~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p 245 (461)
..+|.|++|+|++|.+... ..+..++++|..|++|.|.+|-... ..-..-...|..|. . + +-.-+.|
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~-~ag~~l~~al~~l~-~-~--------kk~~~~~ 157 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGP-EAGGRLGRALFELA-V-N--------KKAASKP 157 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCCh-hHHHHHHHHHHHHH-H-H--------hccCCCc
Confidence 3566777777777777655 4677889999999999999985211 10000001111111 0 0 0011344
Q ss_pred CeeeEEEecCCCCce-------eeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhcccc
Q 012562 246 NLVSFNFLASWAPDF-------AFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLE 318 (461)
Q Consensus 246 ~L~~L~l~~~~~~~~-------~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~ 318 (461)
.|+++....+...+. .+...+.|+++.+..+...+.. ...+..-+..+++|+.|+|+.|++..-....
T Consensus 158 ~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG-----~~al~eal~~~~~LevLdl~DNtft~egs~~ 232 (382)
T KOG1909|consen 158 KLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEG-----VTALAEALEHCPHLEVLDLRDNTFTLEGSVA 232 (382)
T ss_pred ceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCch-----hHHHHHHHHhCCcceeeecccchhhhHHHHH
Confidence 455554443222111 1334556666666443221111 2234555677899999999999876433222
Q ss_pred ccccCCcccCcccEEEEEEeCC-CcchhhHhh-hhccCCCcceEEEEeccC
Q 012562 319 ERGFIPNSFNYLKSLVLSVSMA-DWVVPSIIS-LLNCSPNLEALTIYFEGE 367 (461)
Q Consensus 319 ~~~~l~~~~~~L~~L~l~~~~~-~~~~l~~~~-lL~~~p~L~~L~l~~~~~ 367 (461)
.-..+| .+++|+.|.++.|.. +......+. +-+..|+|+.|.+.++..
T Consensus 233 LakaL~-s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 233 LAKALS-SWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI 282 (382)
T ss_pred HHHHhc-ccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchh
Confidence 234566 778899999988865 333333333 446789999998888763
No 17
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.34 E-value=1.5e-07 Score=62.20 Aligned_cols=37 Identities=38% Similarity=0.760 Sum_probs=31.4
Q ss_pred CCCCChHHHHHHhcCCChhHHHHHHHHhHhHHHhhcc
Q 012562 18 LCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLS 54 (461)
Q Consensus 18 is~LPd~iL~~Ils~Lp~~d~~~~s~vskrWr~lw~~ 54 (461)
+++||+|++.+||++|+.+|.++.+.|||+|+.+...
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence 5689999999999999999999999999999987654
No 18
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.28 E-value=1.1e-06 Score=55.86 Aligned_cols=34 Identities=38% Similarity=0.673 Sum_probs=31.7
Q ss_pred CChHHHHHHhcCCChhHHHHHHHHhHhHHHhhcc
Q 012562 21 LPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLS 54 (461)
Q Consensus 21 LPd~iL~~Ils~Lp~~d~~~~s~vskrWr~lw~~ 54 (461)
||+|++.+||++|+.+|.++.+.|||+|+.+...
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999987644
No 19
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=7.5e-07 Score=79.98 Aligned_cols=245 Identities=18% Similarity=0.185 Sum_probs=149.6
Q ss_pred cccCCCccEEEeceeccccccccCC-----CccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecC-CceE
Q 012562 141 LVTCESLEALKLACRQLRMCVLKLP-----FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFR-DFKI 214 (461)
Q Consensus 141 l~~~~~L~~L~L~~~~~~~~~l~~~-----~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~-~~~~ 214 (461)
++...-+..|.+.+| .++.. -...+..++.|+|.+|.+++-..+..++.+.|.|+.|.|+.|... .+..
T Consensus 41 v~s~ra~ellvln~~-----~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~ 115 (418)
T KOG2982|consen 41 VSSLRALELLVLNGS-----IIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS 115 (418)
T ss_pred eccccchhhheecCC-----CCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc
Confidence 333445556777777 66551 123578899999999999987788899999999999999998732 2333
Q ss_pred EEEecCCcCeEEEeccCCCCCCCeE-EEEecCCeeeEEEecCCCCceee-----eC-CCCceEEEEEEEeecCCCCchhh
Q 012562 215 LDISSTSLKSLTLDNFGGDESGNYK-VKIACPNLVSFNFLASWAPDFAF-----ED-LDSLQNAFIFFDIIDRDERDNES 287 (461)
Q Consensus 215 ~~i~~~~L~~L~l~~~~~~~~~~~~-~~~~~p~L~~L~l~~~~~~~~~~-----~~-~~~L~~l~l~~~~~~~~~~~~~~ 287 (461)
...+..+|+.|.+.++... ..... ..-+.|.++.|.++.+....+.+ +. .+.+..+.. ..++.+.
T Consensus 116 lp~p~~nl~~lVLNgT~L~-w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~-------~~c~~~~ 187 (418)
T KOG2982|consen 116 LPLPLKNLRVLVLNGTGLS-WTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQ-------LPCLEQL 187 (418)
T ss_pred CcccccceEEEEEcCCCCC-hhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhc-------CCcHHHH
Confidence 3345567888888876631 11111 22367777777776642221111 10 112222222 0122222
Q ss_pred HHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCC-CcchhhHhhhhccCCCcceEEEEecc
Q 012562 288 CHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMA-DWVVPSIISLLNCSPNLEALTIYFEG 366 (461)
Q Consensus 288 ~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~-~~~~l~~~~lL~~~p~L~~L~l~~~~ 366 (461)
.....++.+.+||+..+.++.+.++....+.-.. .|+.+.-|.++.+.. +|+.+. -|..+|.|..|.+..++
T Consensus 188 w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se----~~p~~~~LnL~~~~idswasvD---~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 188 WLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSE----PFPSLSCLNLGANNIDSWASVD---ALNGFPQLVDLRVSENP 260 (418)
T ss_pred HHHHHhHHhhcccchheeeecCcccchhhcccCC----CCCcchhhhhcccccccHHHHH---HHcCCchhheeeccCCc
Confidence 4456667778999999999999888666554334 444666778866544 677666 57899999999887765
Q ss_pred CCC--ccccccCcCccccccceeEEEEEe---ec---CChhHHHHHHHHHh
Q 012562 367 EDC--DDWKISNKSIFCLTCHLKTVELIH---VA---GDENELELVRFLLK 409 (461)
Q Consensus 367 ~~~--~~~~~~~~~~~~~~~~Lk~v~i~~---~~---g~~~e~~~~~~ll~ 409 (461)
-.. ...++... +...|..|++.+ +. ....|..|++|.+.
T Consensus 261 l~d~l~~~err~l----lIaRL~~v~vLNGskIss~er~dSEr~fVRyym~ 307 (418)
T KOG2982|consen 261 LSDPLRGGERRFL----LIARLTKVQVLNGSKISSRERKDSERRFVRYYMS 307 (418)
T ss_pred ccccccCCcceEE----EEeeccceEEecCcccchhhhhhhHHHHHHHHhh
Confidence 210 11111222 234455555552 21 23577899998876
No 20
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.19 E-value=5.1e-09 Score=102.36 Aligned_cols=206 Identities=15% Similarity=0.063 Sum_probs=122.0
Q ss_pred eeeeCCCCcccCCCccEEEeceeccccccccC-C-CccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecC
Q 012562 133 EVTELPHCLVTCESLEALKLACRQLRMCVLKL-P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFR 210 (461)
Q Consensus 133 ~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~ 210 (461)
....+|..+|.+..|+.|+|+.+ .+.. | ....-+++-.|+|+++.+.+ --..++.+..-|-.|+|+.+...
T Consensus 91 KnsGiP~diF~l~dLt~lDLShN-----qL~EvP~~LE~AKn~iVLNLS~N~Iet--IPn~lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 91 KNSGIPTDIFRLKDLTILDLSHN-----QLREVPTNLEYAKNSIVLNLSYNNIET--IPNSLFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred ccCCCCchhcccccceeeecchh-----hhhhcchhhhhhcCcEEEEcccCcccc--CCchHHHhhHhHhhhccccchhh
Confidence 35678888999999999999998 6655 4 44566788899999888765 23445666777778888887543
Q ss_pred CceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCC----CceeeeCCCCceEEEEEEEeecCCCCchh
Q 012562 211 DFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWA----PDFAFEDLDSLQNAFIFFDIIDRDERDNE 286 (461)
Q Consensus 211 ~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 286 (461)
.+.+-.-.-..|++|.++++..- .-.+.-.-.+.+|..|.+++... .+.++.++.+|.+++++.+.. |.
T Consensus 164 ~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L-----p~- 236 (1255)
T KOG0444|consen 164 MLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL-----PI- 236 (1255)
T ss_pred hcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC-----Cc-
Confidence 33221112246778888876520 00111111345566666766321 123456677888888865432 11
Q ss_pred hHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEecc
Q 012562 287 SCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEG 366 (461)
Q Consensus 287 ~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~~ 366 (461)
+..-+-.+++|+.|+|++|.+.-+..+.. ...+|++|+++-+.... ++. -+-..|.|++|.+..+.
T Consensus 237 ----vPecly~l~~LrrLNLS~N~iteL~~~~~------~W~~lEtLNlSrNQLt~--LP~--avcKL~kL~kLy~n~Nk 302 (1255)
T KOG0444|consen 237 ----VPECLYKLRNLRRLNLSGNKITELNMTEG------EWENLETLNLSRNQLTV--LPD--AVCKLTKLTKLYANNNK 302 (1255)
T ss_pred ----chHHHhhhhhhheeccCcCceeeeeccHH------HHhhhhhhccccchhcc--chH--HHhhhHHHHHHHhccCc
Confidence 34444567788888888887654433321 34577777776554311 111 22334566666555543
No 21
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.18 E-value=3.3e-08 Score=96.81 Aligned_cols=177 Identities=19% Similarity=0.181 Sum_probs=92.3
Q ss_pred eeCCCCcccCCCccEEEeceeccccccccC-C-CccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCC-
Q 012562 135 TELPHCLVTCESLEALKLACRQLRMCVLKL-P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRD- 211 (461)
Q Consensus 135 ~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~- 211 (461)
..+|..+...+.++.|.|... .+.. | ....+.+|++|++.++... .+..-++..|.|+.+.+..+....
T Consensus 22 ~~FP~~v~qMt~~~WLkLnrt-----~L~~vPeEL~~lqkLEHLs~~HN~L~---~vhGELs~Lp~LRsv~~R~N~LKns 93 (1255)
T KOG0444|consen 22 DRFPHDVEQMTQMTWLKLNRT-----KLEQVPEELSRLQKLEHLSMAHNQLI---SVHGELSDLPRLRSVIVRDNNLKNS 93 (1255)
T ss_pred CcCchhHHHhhheeEEEechh-----hhhhChHHHHHHhhhhhhhhhhhhhH---hhhhhhccchhhHHHhhhccccccC
Confidence 446666666666666666665 4444 3 4456667777777666554 233335566677776666654221
Q ss_pred -ceEEEEecCCcCeEEEeccCCCCCCCeEE-EEecCCeeeEEEecCCCCcee---eeCCCCceEEEEEEEeecCCCCchh
Q 012562 212 -FKILDISSTSLKSLTLDNFGGDESGNYKV-KIACPNLVSFNFLASWAPDFA---FEDLDSLQNAFIFFDIIDRDERDNE 286 (461)
Q Consensus 212 -~~~~~i~~~~L~~L~l~~~~~~~~~~~~~-~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~l~l~~~~~~~~~~~~~ 286 (461)
+..--..-..|+.|+++.+.. ...+- .-.+.++-.|.++.+.+..+. +.++..|-.++++-+.
T Consensus 94 GiP~diF~l~dLt~lDLShNqL---~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr--------- 161 (1255)
T KOG0444|consen 94 GIPTDIFRLKDLTILDLSHNQL---REVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR--------- 161 (1255)
T ss_pred CCCchhcccccceeeecchhhh---hhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch---------
Confidence 111111124455666665542 11111 124566666776664443322 3334444444443221
Q ss_pred hHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEE
Q 012562 287 SCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSV 337 (461)
Q Consensus 287 ~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 337 (461)
...+..-.+.+.+|++|.|++|.+.... ...+| .+.+|+.|.++.
T Consensus 162 -Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQ----LrQLP-smtsL~vLhms~ 206 (1255)
T KOG0444|consen 162 -LEMLPPQIRRLSMLQTLKLSNNPLNHFQ----LRQLP-SMTSLSVLHMSN 206 (1255)
T ss_pred -hhhcCHHHHHHhhhhhhhcCCChhhHHH----HhcCc-cchhhhhhhccc
Confidence 1224444556677888888887765322 34455 556666666643
No 22
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=1e-07 Score=85.44 Aligned_cols=100 Identities=23% Similarity=0.245 Sum_probs=53.9
Q ss_pred CccEEEeceeccccccccC----CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEE-----E
Q 012562 146 SLEALKLACRQLRMCVLKL----PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKIL-----D 216 (461)
Q Consensus 146 ~L~~L~L~~~~~~~~~l~~----~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~-----~ 216 (461)
.|++|+|++. .+.. .-...|..|+.|+|.++...|. +..-++.-.+|+.|+|+.|. |+... -
T Consensus 186 Rlq~lDLS~s-----~it~stl~~iLs~C~kLk~lSlEg~~LdD~--I~~~iAkN~~L~~lnlsm~s--G~t~n~~~ll~ 256 (419)
T KOG2120|consen 186 RLQHLDLSNS-----VITVSTLHGILSQCSKLKNLSLEGLRLDDP--IVNTIAKNSNLVRLNLSMCS--GFTENALQLLL 256 (419)
T ss_pred hhHHhhcchh-----heeHHHHHHHHHHHHhhhhccccccccCcH--HHHHHhccccceeecccccc--ccchhHHHHHH
Confidence 4777777766 4333 1234566777777777766653 33335555667777777764 22211 1
Q ss_pred EecCCcCeEEEeccCCCCCCCeEEEE--ecCCeeeEEEecC
Q 012562 217 ISSTSLKSLTLDNFGGDESGNYKVKI--ACPNLVSFNFLAS 255 (461)
Q Consensus 217 i~~~~L~~L~l~~~~~~~~~~~~~~~--~~p~L~~L~l~~~ 255 (461)
-++++|..|+++-|... .+...+.+ -.++|+.|.++|+
T Consensus 257 ~scs~L~~LNlsWc~l~-~~~Vtv~V~hise~l~~LNlsG~ 296 (419)
T KOG2120|consen 257 SSCSRLDELNLSWCFLF-TEKVTVAVAHISETLTQLNLSGY 296 (419)
T ss_pred HhhhhHhhcCchHhhcc-chhhhHHHhhhchhhhhhhhhhh
Confidence 23466777777766531 11111111 3466777777763
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.01 E-value=1.3e-06 Score=80.21 Aligned_cols=202 Identities=17% Similarity=0.093 Sum_probs=97.6
Q ss_pred CCCccEEEeceeccccccccC-------CCccccCcccEEEeeeEEEcCh---------hhHHHHhhcCccccceEEeee
Q 012562 144 CESLEALKLACRQLRMCVLKL-------PFSVGFSRLKSLDLHNVEFLDH---------NLLHKFVSSRRLLEKLILKSC 207 (461)
Q Consensus 144 ~~~L~~L~L~~~~~~~~~l~~-------~~~~~l~~L~~L~L~~~~~~~~---------~~l~~l~~~cp~Le~L~L~~c 207 (461)
..+++.++|+++ ++.. +...+-++|+.-++++.- ++. ..+...+.+||.|++|+|++|
T Consensus 29 ~~s~~~l~lsgn-----t~G~EAa~~i~~~L~~~~~L~~v~~sd~f-tGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 29 MDSLTKLDLSGN-----TFGTEAARAIAKVLASKKELREVNLSDMF-TGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred cCceEEEeccCC-----chhHHHHHHHHHHHhhcccceeeehHhhh-cCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 457888888888 5544 233445566666665432 221 234455668999999999998
Q ss_pred ecCCc--eE---EEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCceeeeCCCCceEEEEEEEeecCCC
Q 012562 208 SFRDF--KI---LDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFFDIIDRDE 282 (461)
Q Consensus 208 ~~~~~--~~---~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~ 282 (461)
.+..- +. +--++.+|++|.+.+|++...+.-.+ ...|..|... --.++.+.|+.+..+-+.. ++
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l---~~al~~l~~~------kk~~~~~~Lrv~i~~rNrl--en 171 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRL---GRALFELAVN------KKAASKPKLRVFICGRNRL--EN 171 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHH---HHHHHHHHHH------hccCCCcceEEEEeecccc--cc
Confidence 64221 11 11135677777777776311110000 0111111110 0112345555555533322 11
Q ss_pred CchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCC-CcchhhHhhhhccCCCcceEE
Q 012562 283 RDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMA-DWVVPSIISLLNCSPNLEALT 361 (461)
Q Consensus 283 ~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~-~~~~l~~~~lL~~~p~L~~L~ 361 (461)
.+ ...+...++..+.++.+.+..|.+..-........+. .+++|+.|+|..|.. ..........|..+|+|+.|.
T Consensus 172 ~g---a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~-~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 172 GG---ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALE-HCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred cc---HHHHHHHHHhccccceEEEecccccCchhHHHHHHHH-hCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 11 2235556666677777777766544211101111222 445666666655543 222222222555566666666
Q ss_pred EEecc
Q 012562 362 IYFEG 366 (461)
Q Consensus 362 l~~~~ 366 (461)
+..|.
T Consensus 248 l~dcl 252 (382)
T KOG1909|consen 248 LGDCL 252 (382)
T ss_pred ccccc
Confidence 55554
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.95 E-value=2.4e-07 Score=94.81 Aligned_cols=154 Identities=19% Similarity=0.278 Sum_probs=77.4
Q ss_pred HHHHHHHHHhcCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC--CCccccCcccEEEeeeEEEcChhh
Q 012562 111 VYRWVCAVARRNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL--PFSVGFSRLKSLDLHNVEFLDHNL 188 (461)
Q Consensus 111 ~~~wi~~~~~~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~--~~~~~l~~L~~L~L~~~~~~~~~~ 188 (461)
+..|+..++ +++.+....+. ...+|..++...+|++|....| .+.. +....+++|++|+|..+.+.+-
T Consensus 256 lp~wi~~~~--nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~n-----el~yip~~le~~~sL~tLdL~~N~L~~l-- 325 (1081)
T KOG0618|consen 256 LPEWIGACA--NLEALNANHNR-LVALPLRISRITSLVSLSAAYN-----ELEYIPPFLEGLKSLRTLDLQSNNLPSL-- 325 (1081)
T ss_pred chHHHHhcc--cceEecccchh-HHhhHHHHhhhhhHHHHHhhhh-----hhhhCCCcccccceeeeeeehhcccccc--
Confidence 335554432 45555543332 2455555555556666666666 4444 3445688999999999887653
Q ss_pred HHHHhhcCcc-ccceEEeeeecCCceEEE-EecCCcCeEEEeccCCCCCCC-eEEEEecCCeeeEEEecCCCC---ceee
Q 012562 189 LHKFVSSRRL-LEKLILKSCSFRDFKILD-ISSTSLKSLTLDNFGGDESGN-YKVKIACPNLVSFNFLASWAP---DFAF 262 (461)
Q Consensus 189 l~~l~~~cp~-Le~L~L~~c~~~~~~~~~-i~~~~L~~L~l~~~~~~~~~~-~~~~~~~p~L~~L~l~~~~~~---~~~~ 262 (461)
-..++...+. |+.|..+.+......... -..+.|..|.+.++.+ .+. .++....++|+.|+++.+... ...+
T Consensus 326 p~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~L--td~c~p~l~~~~hLKVLhLsyNrL~~fpas~~ 403 (1081)
T KOG0618|consen 326 PDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHL--TDSCFPVLVNFKHLKVLHLSYNRLNSFPASKL 403 (1081)
T ss_pred chHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcc--cccchhhhccccceeeeeecccccccCCHHHH
Confidence 1122222222 444444443322111111 1124566666666654 222 223446667777777664322 2234
Q ss_pred eCCCCceEEEEEEE
Q 012562 263 EDLDSLQNAFIFFD 276 (461)
Q Consensus 263 ~~~~~L~~l~l~~~ 276 (461)
.+++.|++++++-+
T Consensus 404 ~kle~LeeL~LSGN 417 (1081)
T KOG0618|consen 404 RKLEELEELNLSGN 417 (1081)
T ss_pred hchHHhHHHhcccc
Confidence 45566666666433
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.95 E-value=6.2e-07 Score=76.65 Aligned_cols=124 Identities=24% Similarity=0.245 Sum_probs=45.1
Q ss_pred CCeEEEEEEcceeeeCCCCcc-cCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccc
Q 012562 122 NVQVFDLTVYGEVTELPHCLV-TCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLL 199 (461)
Q Consensus 122 ~l~~L~l~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~L 199 (461)
++++|+|...... .+ ..+. .+.+|+.|+|++| .+.. .+...+++|++|++++|.+++- -..+..+||+|
T Consensus 20 ~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N-----~I~~l~~l~~L~~L~~L~L~~N~I~~i--~~~l~~~lp~L 90 (175)
T PF14580_consen 20 KLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNN-----QITKLEGLPGLPRLKTLDLSNNRISSI--SEGLDKNLPNL 90 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS-------S--TT----TT--EEE--SS---S---CHHHHHH-TT-
T ss_pred ccccccccccccc-cc-cchhhhhcCCCEEECCCC-----CCccccCccChhhhhhcccCCCCCCcc--ccchHHhCCcC
Confidence 5677777554311 12 2333 3678999999999 6666 5677789999999999988753 12334578999
Q ss_pred cceEEeeeecCCceEEEE--ecCCcCeEEEeccCCCCCCCeE--EEEecCCeeeEEEec
Q 012562 200 EKLILKSCSFRDFKILDI--SSTSLKSLTLDNFGGDESGNYK--VKIACPNLVSFNFLA 254 (461)
Q Consensus 200 e~L~L~~c~~~~~~~~~i--~~~~L~~L~l~~~~~~~~~~~~--~~~~~p~L~~L~l~~ 254 (461)
++|.+.+|.+.++..+.- ..++|+.|.+.+|...+..... +...+|+|+.|+...
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 999999887655433211 2367777777766653333322 222567777775443
No 26
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.91 E-value=2.5e-05 Score=81.84 Aligned_cols=114 Identities=17% Similarity=0.159 Sum_probs=71.7
Q ss_pred cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccc
Q 012562 121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLL 199 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~L 199 (461)
.+-..|+++... ...+|..+. ++|+.|.+.+| .+.. |. ..++|++|+|.+|.++.- +. ..+.|
T Consensus 201 ~~~~~LdLs~~~-LtsLP~~l~--~~L~~L~L~~N-----~Lt~LP~--lp~~Lk~LdLs~N~LtsL---P~---lp~sL 264 (788)
T PRK15387 201 NGNAVLNVGESG-LTTLPDCLP--AHITTLVIPDN-----NLTSLPA--LPPELRTLEVSGNQLTSL---PV---LPPGL 264 (788)
T ss_pred CCCcEEEcCCCC-CCcCCcchh--cCCCEEEccCC-----cCCCCCC--CCCCCcEEEecCCccCcc---cC---ccccc
Confidence 456677775543 346777665 47899999988 5554 32 357899999988877642 22 24688
Q ss_pred cceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCC
Q 012562 200 EKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAP 258 (461)
Q Consensus 200 e~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~ 258 (461)
++|++.+|.+..+.. ..++|+.|.+..|.+ ..+. ...|+|++|+++++...
T Consensus 265 ~~L~Ls~N~L~~Lp~---lp~~L~~L~Ls~N~L---t~LP--~~p~~L~~LdLS~N~L~ 315 (788)
T PRK15387 265 LELSIFSNPLTHLPA---LPSGLCKLWIFGNQL---TSLP--VLPPGLQELSVSDNQLA 315 (788)
T ss_pred ceeeccCCchhhhhh---chhhcCEEECcCCcc---cccc--ccccccceeECCCCccc
Confidence 888888875443221 125677777777663 2221 13467888888775443
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.91 E-value=6.7e-06 Score=70.33 Aligned_cols=65 Identities=17% Similarity=0.017 Sum_probs=32.2
Q ss_pred hcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCC--CcchhhHhhhhccCCCcceEEEEecc
Q 012562 296 NELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMA--DWVVPSIISLLNCSPNLEALTIYFEG 366 (461)
Q Consensus 296 ~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~--~~~~l~~~~lL~~~p~L~~L~l~~~~ 366 (461)
..+++|+.|.+++|.+..+.. ...+. .+++|+.|++..+.. ....-.. ++..+|+|+.|+-....
T Consensus 85 ~~lp~L~~L~L~~N~I~~l~~---l~~L~-~l~~L~~L~L~~NPv~~~~~YR~~--vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 85 KNLPNLQELYLSNNKISDLNE---LEPLS-SLPKLRVLSLEGNPVCEKKNYRLF--VIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp HH-TT--EEE-TTS---SCCC---CGGGG-G-TT--EEE-TT-GGGGSTTHHHH--HHHH-TT-SEETTEETT
T ss_pred HhCCcCCEEECcCCcCCChHH---hHHHH-cCCCcceeeccCCcccchhhHHHH--HHHHcChhheeCCEEcc
Confidence 457888888888887764433 33344 566888888876653 3333333 77889999999655543
No 28
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.82 E-value=2.3e-05 Score=82.11 Aligned_cols=51 Identities=18% Similarity=0.219 Sum_probs=27.0
Q ss_pred CCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEE
Q 012562 122 NVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEF 183 (461)
Q Consensus 122 ~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~ 183 (461)
+++.|.+..+. ...+|. ..++|++|+|++| .+.. |. ..++|++|+|.++.+
T Consensus 223 ~L~~L~L~~N~-Lt~LP~---lp~~Lk~LdLs~N-----~LtsLP~--lp~sL~~L~Ls~N~L 274 (788)
T PRK15387 223 HITTLVIPDNN-LTSLPA---LPPELRTLEVSGN-----QLTSLPV--LPPGLLELSIFSNPL 274 (788)
T ss_pred CCCEEEccCCc-CCCCCC---CCCCCcEEEecCC-----ccCcccC--cccccceeeccCCch
Confidence 56667665432 334454 2457777777777 4433 21 134566666555543
No 29
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.79 E-value=1.3e-05 Score=84.34 Aligned_cols=245 Identities=14% Similarity=0.111 Sum_probs=135.9
Q ss_pred cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccc
Q 012562 121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLL 199 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~L 199 (461)
.+...|++.... ...+|..+. ++|+.|+|++| .+.. |. ..+++|++|+|.+|.++. +..-+ .+.|
T Consensus 178 ~~~~~L~L~~~~-LtsLP~~Ip--~~L~~L~Ls~N-----~LtsLP~-~l~~nL~~L~Ls~N~Lts---LP~~l--~~~L 243 (754)
T PRK15370 178 NNKTELRLKILG-LTTIPACIP--EQITTLILDNN-----ELKSLPE-NLQGNIKTLYANSNQLTS---IPATL--PDTI 243 (754)
T ss_pred cCceEEEeCCCC-cCcCCcccc--cCCcEEEecCC-----CCCcCCh-hhccCCCEEECCCCcccc---CChhh--hccc
Confidence 356677774432 345666543 47999999999 5555 32 234689999999887763 22211 2579
Q ss_pred cceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCceeeeCCCCceEEEEEEEeec
Q 012562 200 EKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFFDIID 279 (461)
Q Consensus 200 e~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~ 279 (461)
+.|+|++|.+..+.. .+ ..+|+.|.+++|.+ ..+.-.+ .++|++|.++++....+.-.-.++|+.+++..+..
T Consensus 244 ~~L~Ls~N~L~~LP~-~l-~s~L~~L~Ls~N~L---~~LP~~l-~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~L- 316 (754)
T PRK15370 244 QEMELSINRITELPE-RL-PSALQSLDLFHNKI---SCLPENL-PEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSL- 316 (754)
T ss_pred cEEECcCCccCcCCh-hH-hCCCCEEECcCCcc---Ccccccc-CCCCcEEECCCCccccCcccchhhHHHHHhcCCcc-
Confidence 999999986543211 11 25799999987774 2222112 35899999988654433211123466666643321
Q ss_pred CCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcce
Q 012562 280 RDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEA 359 (461)
Q Consensus 280 ~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~ 359 (461)
...|. ...++|+.|.+..|.+..+. ..+| ++|+.|+++.|.... ++. .+ .++|+.
T Consensus 317 -t~LP~----------~l~~sL~~L~Ls~N~Lt~LP-----~~l~---~sL~~L~Ls~N~L~~--LP~-~l---p~~L~~ 371 (754)
T PRK15370 317 -TALPE----------TLPPGLKTLEAGENALTSLP-----ASLP---PELQVLDVSKNQITV--LPE-TL---PPTITT 371 (754)
T ss_pred -ccCCc----------cccccceeccccCCccccCC-----hhhc---CcccEEECCCCCCCc--CCh-hh---cCCcCE
Confidence 00110 01257888888887655322 2222 488888887764321 111 02 367888
Q ss_pred EEEEeccCCCccccccCcCccccccceeEEEEEeecCChhHHHHHHHHHhcCcCcceEEEE
Q 012562 360 LTIYFEGEDCDDWKISNKSIFCLTCHLKTVELIHVAGDENELELVRFLLKNGHVLKKLSFS 420 (461)
Q Consensus 360 L~l~~~~~~~~~~~~~~~~~~~~~~~Lk~v~i~~~~g~~~e~~~~~~ll~~a~~Le~~~i~ 420 (461)
|+|..+.-. .. |..+...|+.+.+.+-.-.. --+-+..+...++.+..+.+.
T Consensus 372 LdLs~N~Lt-------~L-P~~l~~sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~ 423 (754)
T PRK15370 372 LDVSRNALT-------NL-PENLPAALQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVE 423 (754)
T ss_pred EECCCCcCC-------CC-CHhHHHHHHHHhhccCCccc-CchhHHHHhhcCCCccEEEee
Confidence 888876531 12 33333455655555311110 001233344566777777776
No 30
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.69 E-value=8e-07 Score=83.39 Aligned_cols=257 Identities=17% Similarity=0.104 Sum_probs=144.3
Q ss_pred CCccEEEeceeccccccccC----CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeec-CC--ceEEEE
Q 012562 145 ESLEALKLACRQLRMCVLKL----PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSF-RD--FKILDI 217 (461)
Q Consensus 145 ~~L~~L~L~~~~~~~~~l~~----~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~-~~--~~~~~i 217 (461)
..|+.|.|.+|+ ...+ .....+|++++|.+.++...++..+.++...|+.|+.|.+..|.. .. ++.+.-
T Consensus 138 g~lk~LSlrG~r----~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 138 GFLKELSLRGCR----AVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE 213 (483)
T ss_pred cccccccccccc----cCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence 378999999993 3333 134579999999999987666658999999999999999999862 21 222333
Q ss_pred ecCCcCeEEEeccCCCCCCCeE-EEEecCCeeeEEEecCCCCcee-e----eCCCCceEEEEEEEeecCCCCchhhHHHH
Q 012562 218 SSTSLKSLTLDNFGGDESGNYK-VKIACPNLVSFNFLASWAPDFA-F----EDLDSLQNAFIFFDIIDRDERDNESCHIL 291 (461)
Q Consensus 218 ~~~~L~~L~l~~~~~~~~~~~~-~~~~~p~L~~L~l~~~~~~~~~-~----~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 291 (461)
.+++|++|.++.|.-.....++ ..-.+.+++.+...|+...... + ..++.+.++++.-+ ....+..+
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c-------~~lTD~~~ 286 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHC-------NQLTDEDL 286 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhh-------ccccchHH
Confidence 4799999999988632222333 2335566777776764322211 1 12333444443111 00012335
Q ss_pred HHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCC-CcchhhHhhhhccCCCcceEEEEeccCCCc
Q 012562 292 SKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMA-DWVVPSIISLLNCSPNLEALTIYFEGEDCD 370 (461)
Q Consensus 292 ~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~-~~~~l~~~~lL~~~p~L~~L~l~~~~~~~~ 370 (461)
..+-.++..++.|..+++... .... ...+....++|+.|.+..+.. +...... +-++||.|+.|.+..+.-...
T Consensus 287 ~~i~~~c~~lq~l~~s~~t~~--~d~~-l~aLg~~~~~L~~l~l~~c~~fsd~~ft~--l~rn~~~Le~l~~e~~~~~~d 361 (483)
T KOG4341|consen 287 WLIACGCHALQVLCYSSCTDI--TDEV-LWALGQHCHNLQVLELSGCQQFSDRGFTM--LGRNCPHLERLDLEECGLITD 361 (483)
T ss_pred HHHhhhhhHhhhhcccCCCCC--chHH-HHHHhcCCCceEEEeccccchhhhhhhhh--hhcCChhhhhhcccccceehh
Confidence 555566667777777665421 1111 111111456888888877754 4444444 667888888887776542100
Q ss_pred cccccCcCccccccceeEEEEEeec-CChhHHHHHHHHHhcCcCcceEEEE
Q 012562 371 DWKISNKSIFCLTCHLKTVELIHVA-GDENELELVRFLLKNGHVLKKLSFS 420 (461)
Q Consensus 371 ~~~~~~~~~~~~~~~Lk~v~i~~~~-g~~~e~~~~~~ll~~a~~Le~~~i~ 420 (461)
. .-.+..+.| +.|+++.+.... -....+..+.-.-..+..|+.+++.
T Consensus 362 ~-tL~sls~~C--~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~ 409 (483)
T KOG4341|consen 362 G-TLASLSRNC--PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELD 409 (483)
T ss_pred h-hHhhhccCC--chhccCChhhhhhhhhhhhhhhhhccccccccceeeec
Confidence 0 001111344 566666666322 1122223333333455566666665
No 31
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.68 E-value=1.4e-05 Score=83.98 Aligned_cols=95 Identities=15% Similarity=0.169 Sum_probs=44.5
Q ss_pred cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccc
Q 012562 121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLL 199 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~L 199 (461)
.+++.|++..+. ...+|..++ ++|+.|+|++| .+.. |. .-.++|+.|+|++|.+.. ++.-+ ...|
T Consensus 199 ~~L~~L~Ls~N~-LtsLP~~l~--~nL~~L~Ls~N-----~LtsLP~-~l~~~L~~L~Ls~N~L~~---LP~~l--~s~L 264 (754)
T PRK15370 199 EQITTLILDNNE-LKSLPENLQ--GNIKTLYANSN-----QLTSIPA-TLPDTIQEMELSINRITE---LPERL--PSAL 264 (754)
T ss_pred cCCcEEEecCCC-CCcCChhhc--cCCCEEECCCC-----ccccCCh-hhhccccEEECcCCccCc---CChhH--hCCC
Confidence 356667765443 234555443 46777777776 4433 21 112356666666655442 11111 1345
Q ss_pred cceEEeeeecCCceEEEEecCCcCeEEEeccC
Q 012562 200 EKLILKSCSFRDFKILDISSTSLKSLTLDNFG 231 (461)
Q Consensus 200 e~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~ 231 (461)
+.|++++|.+..+.. .+ .++|+.|.+++|.
T Consensus 265 ~~L~Ls~N~L~~LP~-~l-~~sL~~L~Ls~N~ 294 (754)
T PRK15370 265 QSLDLFHNKISCLPE-NL-PEELRYLSVYDNS 294 (754)
T ss_pred CEEECcCCccCcccc-cc-CCCCcEEECCCCc
Confidence 666665544322110 01 1345555555554
No 32
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.38 E-value=5.4e-05 Score=78.91 Aligned_cols=61 Identities=16% Similarity=0.269 Sum_probs=48.3
Q ss_pred CCccEEEeceeccccccccC--C--CccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecC
Q 012562 145 ESLEALKLACRQLRMCVLKL--P--FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFR 210 (461)
Q Consensus 145 ~~L~~L~L~~~~~~~~~l~~--~--~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~ 210 (461)
.+|++|+++|.. .+.. + ....||+|++|.+.+..+..+ ++..+..++|+|..|+++++.+.
T Consensus 122 ~nL~~LdI~G~~----~~s~~W~~kig~~LPsL~sL~i~~~~~~~~-dF~~lc~sFpNL~sLDIS~TnI~ 186 (699)
T KOG3665|consen 122 QNLQHLDISGSE----LFSNGWPKKIGTMLPSLRSLVISGRQFDND-DFSQLCASFPNLRSLDISGTNIS 186 (699)
T ss_pred HhhhhcCccccc----hhhccHHHHHhhhCcccceEEecCceecch-hHHHHhhccCccceeecCCCCcc
Confidence 578888888862 2222 2 234699999999999999888 79999999999999999997544
No 33
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.36 E-value=2.9e-06 Score=70.17 Aligned_cols=78 Identities=21% Similarity=0.218 Sum_probs=52.4
Q ss_pred CCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC--CCccccCcccEEEeeeEEEcChhhHHHHhhcCccc
Q 012562 122 NVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL--PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLL 199 (461)
Q Consensus 122 ~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~--~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~L 199 (461)
++..|.++.+. ...+|+.+..+.+|+.|++.++ .+.. +...+++.|+.|++.-+... .+.+-+.++|.|
T Consensus 34 ~ITrLtLSHNK-l~~vppnia~l~nlevln~~nn-----qie~lp~~issl~klr~lnvgmnrl~---~lprgfgs~p~l 104 (264)
T KOG0617|consen 34 NITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNN-----QIEELPTSISSLPKLRILNVGMNRLN---ILPRGFGSFPAL 104 (264)
T ss_pred hhhhhhcccCc-eeecCCcHHHhhhhhhhhcccc-----hhhhcChhhhhchhhhheecchhhhh---cCccccCCCchh
Confidence 34445554332 4567777777888888888888 6555 35667888888888765543 234446677888
Q ss_pred cceEEeeee
Q 012562 200 EKLILKSCS 208 (461)
Q Consensus 200 e~L~L~~c~ 208 (461)
|.|+|.++.
T Consensus 105 evldltynn 113 (264)
T KOG0617|consen 105 EVLDLTYNN 113 (264)
T ss_pred hhhhccccc
Confidence 888888764
No 34
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.30 E-value=6.8e-05 Score=78.15 Aligned_cols=119 Identities=17% Similarity=0.144 Sum_probs=78.5
Q ss_pred HHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeC-CCcchhhHhhhhccCCCcceEEEEeccCC
Q 012562 290 ILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSM-ADWVVPSIISLLNCSPNLEALTIYFEGED 368 (461)
Q Consensus 290 ~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-~~~~~l~~~~lL~~~p~L~~L~l~~~~~~ 368 (461)
.+..+..++|||.+|++++..+..++ .+. .+.||+.|.+..-. ...+-+. -|-+..+|+.|+|+.....
T Consensus 164 dF~~lc~sFpNL~sLDIS~TnI~nl~------GIS-~LknLq~L~mrnLe~e~~~~l~---~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 164 DFSQLCASFPNLRSLDISGTNISNLS------GIS-RLKNLQVLSMRNLEFESYQDLI---DLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred hHHHHhhccCccceeecCCCCccCcH------HHh-ccccHHHHhccCCCCCchhhHH---HHhcccCCCeeeccccccc
Confidence 47888899999999999998876442 233 56688888774433 2333333 3456889999999887532
Q ss_pred CccccccCcCccccccceeEEEEEeecCChhHHHHHHHHHhcCcCcceEEEE
Q 012562 369 CDDWKISNKSIFCLTCHLKTVELIHVAGDENELELVRFLLKNGHVLKKLSFS 420 (461)
Q Consensus 369 ~~~~~~~~~~~~~~~~~Lk~v~i~~~~g~~~e~~~~~~ll~~a~~Le~~~i~ 420 (461)
....--..+ .+|.. -|..+++.+..|..-..++++.+++.-++|+.+.+.
T Consensus 234 ~~~~ii~qY-lec~~-~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 234 DDTKIIEQY-LECGM-VLPELRFLDCSGTDINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred cchHHHHHH-HHhcc-cCccccEEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence 111000122 45532 255666666678877789999999999988888744
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.26 E-value=9.2e-05 Score=66.94 Aligned_cols=175 Identities=15% Similarity=0.102 Sum_probs=106.5
Q ss_pred cccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecC-----------------------CceEEEEec-CCcC
Q 012562 168 VGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFR-----------------------DFKILDISS-TSLK 223 (461)
Q Consensus 168 ~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~-----------------------~~~~~~i~~-~~L~ 223 (461)
..|.+|+++.++++.-. .+..+...=|.|+++.+.+.... |.....++. ..|+
T Consensus 211 ~~f~~l~~~~~s~~~~~---~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Lt 287 (490)
T KOG1259|consen 211 NAFRNLKTLKFSALSTE---NIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELT 287 (490)
T ss_pred HHhhhhheeeeeccchh---heeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhh
Confidence 34566666666655322 33444445566666666553211 111112222 4577
Q ss_pred eEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCce-eeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCcc
Q 012562 224 SLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDF-AFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVK 302 (461)
Q Consensus 224 ~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~ 302 (461)
.|+++.|.+...+.. .--+|.++.|.++.+....+ .+..+++|++++++.+.. .....+=..+-|++
T Consensus 288 elDLS~N~I~~iDES--vKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~L----------s~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 288 ELDLSGNLITQIDES--VKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLL----------AECVGWHLKLGNIK 355 (490)
T ss_pred hccccccchhhhhhh--hhhccceeEEeccccceeeehhhhhcccceEeecccchh----------HhhhhhHhhhcCEe
Confidence 888887664222111 12378999999987544322 255678899999965432 22334445678999
Q ss_pred EEEEecchhhhhccccccccCCcccCcccEEEEEEeCC-CcchhhHhhhhccCCCcceEEEEeccC
Q 012562 303 ALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMA-DWVVPSIISLLNCSPNLEALTIYFEGE 367 (461)
Q Consensus 303 ~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~-~~~~l~~~~lL~~~p~L~~L~l~~~~~ 367 (461)
+|.+.+|.++.++. +. ++.+|..|+++.+.. ..+.+. -+++.|.|+.|.+.+++-
T Consensus 356 tL~La~N~iE~LSG------L~-KLYSLvnLDl~~N~Ie~ldeV~---~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 356 TLKLAQNKIETLSG------LR-KLYSLVNLDLSSNQIEELDEVN---HIGNLPCLETLRLTGNPL 411 (490)
T ss_pred eeehhhhhHhhhhh------hH-hhhhheeccccccchhhHHHhc---ccccccHHHHHhhcCCCc
Confidence 99999998775443 33 777899999977754 444433 468899999999888763
No 36
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=97.17 E-value=0.00052 Score=38.26 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=24.0
Q ss_pred cccEEEeeeEEEcChhhHHHHhhcCc
Q 012562 172 RLKSLDLHNVEFLDHNLLHKFVSSRR 197 (461)
Q Consensus 172 ~L~~L~L~~~~~~~~~~l~~l~~~cp 197 (461)
+||+|+|..+.+.+++.++.++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 58999999999988778999999998
No 37
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.16 E-value=5.1e-06 Score=68.79 Aligned_cols=155 Identities=19% Similarity=0.083 Sum_probs=69.3
Q ss_pred cccCCCccEEEeceeccccccccC--CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEe
Q 012562 141 LVTCESLEALKLACRQLRMCVLKL--PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDIS 218 (461)
Q Consensus 141 l~~~~~L~~L~L~~~~~~~~~l~~--~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~ 218 (461)
++..++.+.|.|+.+ .+.. |....+.+|+.|++.++.+. .+..-+++.|.|+.|.+..+....+..-.-+
T Consensus 29 Lf~~s~ITrLtLSHN-----Kl~~vppnia~l~nlevln~~nnqie---~lp~~issl~klr~lnvgmnrl~~lprgfgs 100 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHN-----KLTVVPPNIAELKNLEVLNLSNNQIE---ELPTSISSLPKLRILNVGMNRLNILPRGFGS 100 (264)
T ss_pred ccchhhhhhhhcccC-----ceeecCCcHHHhhhhhhhhcccchhh---hcChhhhhchhhhheecchhhhhcCccccCC
Confidence 444555566666665 3333 45555666666666555543 2333355556666666555432111111111
Q ss_pred cCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCC--ceeeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHh
Q 012562 219 STSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAP--DFAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLN 296 (461)
Q Consensus 219 ~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~ 296 (461)
.|.|+.|++..+...+..-..-.+.+..|+-|.++++.+. +..++.+.+|+-+.+.-+ | .-.+.+-++
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn--d--------ll~lpkeig 170 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN--D--------LLSLPKEIG 170 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC--c--------hhhCcHHHH
Confidence 2455555555444311110111123334444444442221 112233333333333111 0 112444555
Q ss_pred cCCCccEEEEecchhhh
Q 012562 297 ELCEVKALKLSTAFLRF 313 (461)
Q Consensus 297 ~l~~l~~L~l~~~~~~~ 313 (461)
.+..++.|.+++|.+.+
T Consensus 171 ~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 171 DLTRLRELHIQGNRLTV 187 (264)
T ss_pred HHHHHHHHhcccceeee
Confidence 66778888888876553
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.16 E-value=0.00012 Score=50.97 Aligned_cols=56 Identities=25% Similarity=0.186 Sum_probs=36.8
Q ss_pred CCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeee
Q 012562 145 ESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSC 207 (461)
Q Consensus 145 ~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c 207 (461)
++|++|++++| .+.. ..+..+++|++|++.++.+..- -...+.++|.|+.|++++|
T Consensus 1 p~L~~L~l~~n-----~l~~i~~~~f~~l~~L~~L~l~~N~l~~i--~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-----KLTEIPPDSFSNLPNLETLDLSNNNLTSI--PPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-----TESEECTTTTTTGTTESEEEETSSSESEE--ETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-----CCCccCHHHHcCCCCCCEeEccCCccCcc--CHHHHcCCCCCCEEeCcCC
Confidence 36777777777 4433 2455677777777777766532 2234677788888887775
No 39
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.99 E-value=0.00035 Score=62.43 Aligned_cols=114 Identities=16% Similarity=0.079 Sum_probs=60.9
Q ss_pred ecCCeeeEEEecCCCCcee-------eeCCCCceEEEEEEEeecCCCCchhhHHHHHHH--HhcCCCccEEEEecchhhh
Q 012562 243 ACPNLVSFNFLASWAPDFA-------FEDLDSLQNAFIFFDIIDRDERDNESCHILSKL--LNELCEVKALKLSTAFLRF 313 (461)
Q Consensus 243 ~~p~L~~L~l~~~~~~~~~-------~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~--l~~l~~l~~L~l~~~~~~~ 313 (461)
+.|.|+++....+.....+ +....+|..+.+.-+...|.+. ....+ +..+.+|+.|+|+.|++..
T Consensus 155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv------~~L~~~gl~y~~~LevLDlqDNtft~ 228 (388)
T COG5238 155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGV------TMLAFLGLFYSHSLEVLDLQDNTFTL 228 (388)
T ss_pred cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchh------HHHHHHHHHHhCcceeeeccccchhh
Confidence 5677777766554333221 2334567777775443322221 11111 2356788888888887654
Q ss_pred hccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhc-----cCCCcceEEEEec
Q 012562 314 HFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLN-----CSPNLEALTIYFE 365 (461)
Q Consensus 314 ~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~-----~~p~L~~L~l~~~ 365 (461)
.........++ ..+.|+.|.+..|.....+... +++ ..|+|..|-.+.+
T Consensus 229 ~gS~~La~al~-~W~~lrEL~lnDClls~~G~~~--v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 229 EGSRYLADALC-EWNLLRELRLNDCLLSNEGVKS--VLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred hhHHHHHHHhc-ccchhhhccccchhhccccHHH--HHHHhhhhcCCCccccccchh
Confidence 33222223345 6667888888777543332222 333 3567776655544
No 40
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.93 E-value=1.7e-05 Score=81.78 Aligned_cols=20 Identities=30% Similarity=0.375 Sum_probs=12.3
Q ss_pred eCCCCcccCCCccEEEecee
Q 012562 136 ELPHCLVTCESLEALKLACR 155 (461)
Q Consensus 136 ~lp~~l~~~~~L~~L~L~~~ 155 (461)
.+|+.....++|++|+|..+
T Consensus 301 yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 301 YIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred hCCCcccccceeeeeeehhc
Confidence 34555555666777777666
No 41
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.75 E-value=6.3e-05 Score=70.49 Aligned_cols=81 Identities=23% Similarity=0.249 Sum_probs=44.1
Q ss_pred cCCeeeEEEecCCCC---ceeeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhcccccc
Q 012562 244 CPNLVSFNFLASWAP---DFAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEER 320 (461)
Q Consensus 244 ~p~L~~L~l~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~ 320 (461)
.|+|+.|+++++... .-.|+++..++++.+.-+.. -..-...+.++.+|+.|+|.+|.+.++..
T Consensus 273 L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l---------~~v~~~~f~~ls~L~tL~L~~N~it~~~~---- 339 (498)
T KOG4237|consen 273 LPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKL---------EFVSSGMFQGLSGLKTLSLYDNQITTVAP---- 339 (498)
T ss_pred cccceEeccCCCccchhhhhhhcchhhhhhhhcCcchH---------HHHHHHhhhccccceeeeecCCeeEEEec----
Confidence 466666666664332 22455566666666633221 11233456677777777777777665442
Q ss_pred ccCCcccCcccEEEEEEe
Q 012562 321 GFIPNSFNYLKSLVLSVS 338 (461)
Q Consensus 321 ~~l~~~~~~L~~L~l~~~ 338 (461)
..+. ....|.+|.+-.+
T Consensus 340 ~aF~-~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 340 GAFQ-TLFSLSTLNLLSN 356 (498)
T ss_pred cccc-ccceeeeeehccC
Confidence 2233 4446666766443
No 42
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.67 E-value=6.6e-06 Score=77.02 Aligned_cols=177 Identities=20% Similarity=0.099 Sum_probs=80.5
Q ss_pred eeCCCCcccCCCccEEEeceeccccccccC--CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCc
Q 012562 135 TELPHCLVTCESLEALKLACRQLRMCVLKL--PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDF 212 (461)
Q Consensus 135 ~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~--~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~ 212 (461)
.++|..+++..+|+.|+.+.+ .+.. +....+-.|..|+..++.+.. +..-+.+|..|..|.+.++.....
T Consensus 104 s~lp~~i~s~~~l~~l~~s~n-----~~~el~~~i~~~~~l~dl~~~~N~i~s---lp~~~~~~~~l~~l~~~~n~l~~l 175 (565)
T KOG0472|consen 104 SELPEQIGSLISLVKLDCSSN-----ELKELPDSIGRLLDLEDLDATNNQISS---LPEDMVNLSKLSKLDLEGNKLKAL 175 (565)
T ss_pred hhccHHHhhhhhhhhhhcccc-----ceeecCchHHHHhhhhhhhcccccccc---CchHHHHHHHHHHhhccccchhhC
Confidence 445555555555555555555 3322 334445555555555544432 222233445555555555543332
Q ss_pred eEEEEecCCcCeEEEeccCCCCCCCeEEEE-ecCCeeeEEEecCCCCc-eeeeCCCCceEEEEEEEeecCCCCchhhHHH
Q 012562 213 KILDISSTSLKSLTLDNFGGDESGNYKVKI-ACPNLVSFNFLASWAPD-FAFEDLDSLQNAFIFFDIIDRDERDNESCHI 290 (461)
Q Consensus 213 ~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~-~~p~L~~L~l~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 290 (461)
..-.+..++|++|+...+. .+.++-.+ .+.+|+.|.+..+.... ..|+++..|.++.++.+.. ..
T Consensus 176 ~~~~i~m~~L~~ld~~~N~---L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i----------~~ 242 (565)
T KOG0472|consen 176 PENHIAMKRLKHLDCNSNL---LETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQI----------EM 242 (565)
T ss_pred CHHHHHHHHHHhcccchhh---hhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHH----------Hh
Confidence 2222333455555544443 22222112 23344444444322211 1345566666666643321 11
Q ss_pred HH-HHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEe
Q 012562 291 LS-KLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVS 338 (461)
Q Consensus 291 ~~-~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 338 (461)
+. ..++.++++..|++..|.++..+.+. - .+.+|..|+++.+
T Consensus 243 lpae~~~~L~~l~vLDLRdNklke~Pde~-----c-lLrsL~rLDlSNN 285 (565)
T KOG0472|consen 243 LPAEHLKHLNSLLVLDLRDNKLKEVPDEI-----C-LLRSLERLDLSNN 285 (565)
T ss_pred hHHHHhcccccceeeeccccccccCchHH-----H-HhhhhhhhcccCC
Confidence 22 23445666777777776655333221 1 3445666666544
No 43
>PLN03150 hypothetical protein; Provisional
Probab=96.65 E-value=0.00092 Score=69.78 Aligned_cols=100 Identities=24% Similarity=0.196 Sum_probs=66.3
Q ss_pred ccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEe-cCCc
Q 012562 147 LEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDIS-STSL 222 (461)
Q Consensus 147 L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~-~~~L 222 (461)
++.|+|+++ .+.. +.+..+++|+.|+|.++.+.+ .+...+..++.|+.|+|++|.+.+..+-.+. .++|
T Consensus 420 v~~L~L~~n-----~L~g~ip~~i~~L~~L~~L~Ls~N~l~g--~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L 492 (623)
T PLN03150 420 IDGLGLDNQ-----GLRGFIPNDISKLRHLQSINLSGNSIRG--NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492 (623)
T ss_pred EEEEECCCC-----CccccCCHHHhCCCCCCEEECCCCcccC--cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCC
Confidence 778888888 5544 245678889999998888765 4555577888999999988876554333332 3788
Q ss_pred CeEEEeccCCCCCCCeEEEE--ecCCeeeEEEecC
Q 012562 223 KSLTLDNFGGDESGNYKVKI--ACPNLVSFNFLAS 255 (461)
Q Consensus 223 ~~L~l~~~~~~~~~~~~~~~--~~p~L~~L~l~~~ 255 (461)
+.|.+.+|.+ .+.+...+ ...++..+.+.++
T Consensus 493 ~~L~Ls~N~l--~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 493 RILNLNGNSL--SGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CEEECcCCcc--cccCChHHhhccccCceEEecCC
Confidence 8888888775 22222111 1235566777663
No 44
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.61 E-value=9.5e-05 Score=74.99 Aligned_cols=40 Identities=23% Similarity=0.245 Sum_probs=32.4
Q ss_pred CCCCCCCChHHHHHHhcCCChhHHHHHHHHhHhHHHhhcc
Q 012562 15 GDRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLS 54 (461)
Q Consensus 15 ~D~is~LPd~iL~~Ils~Lp~~d~~~~s~vskrWr~lw~~ 54 (461)
.+-....|++....+....+..+...+..++++|......
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (482)
T KOG1947|consen 42 LRFTLLLPDELLADLLLKLVVLDRESVSLVTRLWLTLLGS 81 (482)
T ss_pred eeeeeccccchhhhcccccccccccccchhhhhhhhhhhh
Confidence 3456678899999999999988888888899998876544
No 45
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.00016 Score=64.84 Aligned_cols=101 Identities=20% Similarity=0.132 Sum_probs=63.9
Q ss_pred CeeeEEEecCCCCceee-eCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCC
Q 012562 246 NLVSFNFLASWAPDFAF-EDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIP 324 (461)
Q Consensus 246 ~L~~L~l~~~~~~~~~~-~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~ 324 (461)
+.+.|+++|+...++.+ ..+|.|+-+.++++.. .-..-+..|++|+.|.|..|.+..+.+..-+.
T Consensus 20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkI-----------ssL~pl~rCtrLkElYLRkN~I~sldEL~YLk--- 85 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKI-----------SSLAPLQRCTRLKELYLRKNCIESLDELEYLK--- 85 (388)
T ss_pred HhhhhcccCCCccHHHHHHhcccceeEEeecccc-----------ccchhHHHHHHHHHHHHHhcccccHHHHHHHh---
Confidence 44556666655555543 4566677666665543 11233456888888888888877655433334
Q ss_pred cccCcccEEEEEEeCC----CcchhhHhhhhccCCCcceEEEE
Q 012562 325 NSFNYLKSLVLSVSMA----DWVVPSIISLLNCSPNLEALTIY 363 (461)
Q Consensus 325 ~~~~~L~~L~l~~~~~----~~~~l~~~~lL~~~p~L~~L~l~ 363 (461)
.+++|+.|+|..|.+ ..+.-.. +|+..|+|++|+=.
T Consensus 86 -nlpsLr~LWL~ENPCc~~ag~nYR~~--VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 86 -NLPSLRTLWLDENPCCGEAGQNYRRK--VLRVLPNLKKLDNV 125 (388)
T ss_pred -cCchhhhHhhccCCcccccchhHHHH--HHHHcccchhccCc
Confidence 455999999976654 2333334 88999999999543
No 46
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.41 E-value=6.6e-05 Score=70.37 Aligned_cols=57 Identities=19% Similarity=0.225 Sum_probs=36.6
Q ss_pred CCeEEEEEEcceeeeCCCCccc-CCCccEEEeceeccccccccC--C-CccccCcccEEEeee-EEEc
Q 012562 122 NVQVFDLTVYGEVTELPHCLVT-CESLEALKLACRQLRMCVLKL--P-FSVGFSRLKSLDLHN-VEFL 184 (461)
Q Consensus 122 ~l~~L~l~~~~~~~~lp~~l~~-~~~L~~L~L~~~~~~~~~l~~--~-~~~~l~~L~~L~L~~-~~~~ 184 (461)
...+|+|.-+. ...+|+..|. .++|+.|+|+.| .+.. | .+.++++|.+|.+.+ +.++
T Consensus 68 ~tveirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N-----~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 68 ETVEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKN-----NISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred cceEEEeccCC-cccCChhhccchhhhceeccccc-----chhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 44555554443 5567777765 888888888888 4443 2 455677777776666 5544
No 47
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.40 E-value=0.0052 Score=52.79 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=10.8
Q ss_pred EEEecCCeeeEEEec
Q 012562 240 VKIACPNLVSFNFLA 254 (461)
Q Consensus 240 ~~~~~p~L~~L~l~~ 254 (461)
+....|+|+.|++.+
T Consensus 135 vl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 135 VLYKLPSLRTLDFQK 149 (233)
T ss_pred EEEecCcceEeehhh
Confidence 334778888888776
No 48
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.09 E-value=0.0046 Score=42.88 Aligned_cols=55 Identities=29% Similarity=0.349 Sum_probs=42.6
Q ss_pred CCeEEEEEEcceeeeCCCCcc-cCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEE
Q 012562 122 NVQVFDLTVYGEVTELPHCLV-TCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVE 182 (461)
Q Consensus 122 ~l~~L~l~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~ 182 (461)
++++|++..+. ...+|...+ .+++|++|++++| .+.. ..+..+++|++|++.++.
T Consensus 2 ~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N-----~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNN-----NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSST-ESEECTTTTTTGTTESEEEETSS-----SESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCC-----ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 57788886553 557777665 4999999999999 5544 367899999999998764
No 49
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.95 E-value=0.0025 Score=64.54 Aligned_cols=69 Identities=25% Similarity=0.111 Sum_probs=31.6
Q ss_pred HHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCC-CcchhhHhhhhccCCCcceEEEEe
Q 012562 291 LSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMA-DWVVPSIISLLNCSPNLEALTIYF 364 (461)
Q Consensus 291 ~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~-~~~~l~~~~lL~~~p~L~~L~l~~ 364 (461)
+..+...+++++.|.+..+.. +.... ...+...+++|++|++..+.. ....+.. ++.+||+|+.|.+..
T Consensus 261 l~~l~~~c~~L~~L~l~~c~~--lt~~g-l~~i~~~~~~L~~L~l~~c~~~~d~~l~~--~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 261 LSALASRCPNLETLSLSNCSN--LTDEG-LVSIAERCPSLRELDLSGCHGLTDSGLEA--LLKNCPNLRELKLLS 330 (482)
T ss_pred HHHHHhhCCCcceEccCCCCc--cchhH-HHHHHHhcCcccEEeeecCccchHHHHHH--HHHhCcchhhhhhhh
Confidence 444455566666666444331 00000 111111344566666665544 3333333 455566666655443
No 50
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.93 E-value=0.0014 Score=64.67 Aligned_cols=169 Identities=20% Similarity=0.146 Sum_probs=98.8
Q ss_pred cCCCccEEEeceeccccccccC-CC-cccc-CcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEec
Q 012562 143 TCESLEALKLACRQLRMCVLKL-PF-SVGF-SRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDISS 219 (461)
Q Consensus 143 ~~~~L~~L~L~~~~~~~~~l~~-~~-~~~l-~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~ 219 (461)
..+.++.|.+.++ .+.. +. ...+ ++|+.|++.++.+.. +..-+..+|.|+.|++.+|....+.......
T Consensus 114 ~~~~l~~L~l~~n-----~i~~i~~~~~~~~~nL~~L~l~~N~i~~---l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~ 185 (394)
T COG4886 114 ELTNLTSLDLDNN-----NITDIPPLIGLLKSNLKELDLSDNKIES---LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNL 185 (394)
T ss_pred cccceeEEecCCc-----ccccCccccccchhhcccccccccchhh---hhhhhhccccccccccCCchhhhhhhhhhhh
Confidence 3466888888888 5555 33 3334 388888888887653 2234677888888888888755544433355
Q ss_pred CCcCeEEEeccCCCCCCCeEEEEecCC-eeeEEEecCC-CCc-eeeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHh
Q 012562 220 TSLKSLTLDNFGGDESGNYKVKIACPN-LVSFNFLASW-APD-FAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLN 296 (461)
Q Consensus 220 ~~L~~L~l~~~~~~~~~~~~~~~~~p~-L~~L~l~~~~-~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~ 296 (461)
+.|+.|.++++.+ ..++..+..++ |++|.+.++. ... ..+....++..+.+..+. ...+...+.
T Consensus 186 ~~L~~L~ls~N~i---~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~----------~~~~~~~~~ 252 (394)
T COG4886 186 SNLNNLDLSGNKI---SDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK----------LEDLPESIG 252 (394)
T ss_pred hhhhheeccCCcc---ccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce----------eeeccchhc
Confidence 7788888887763 23332223444 7888777752 111 122334444444431111 001234556
Q ss_pred cCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeC
Q 012562 297 ELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSM 339 (461)
Q Consensus 297 ~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 339 (461)
.+++++.|.+..+.+..+.. +. .+.+++.|++..+.
T Consensus 253 ~l~~l~~L~~s~n~i~~i~~------~~-~~~~l~~L~~s~n~ 288 (394)
T COG4886 253 NLSNLETLDLSNNQISSISS------LG-SLTNLRELDLSGNS 288 (394)
T ss_pred cccccceecccccccccccc------cc-ccCccCEEeccCcc
Confidence 67778888888877653322 33 55678888886553
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.88 E-value=0.0032 Score=40.30 Aligned_cols=34 Identities=35% Similarity=0.350 Sum_probs=15.9
Q ss_pred cccEEEeeeEEEcChhhHHHHhhcCccccceEEeeee
Q 012562 172 RLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCS 208 (461)
Q Consensus 172 ~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~ 208 (461)
+|++|+|.++.+++ +...+++||+|+.|++++|.
T Consensus 2 ~L~~L~l~~N~i~~---l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITD---LPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SS---HGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcc---cCchHhCCCCCCEEEecCCC
Confidence 45555555554442 23334555555555555553
No 52
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.85 E-value=0.00038 Score=63.06 Aligned_cols=132 Identities=19% Similarity=0.164 Sum_probs=71.0
Q ss_pred ccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeE-EEEecCCe
Q 012562 169 GFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYK-VKIACPNL 247 (461)
Q Consensus 169 ~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~-~~~~~p~L 247 (461)
..+.|++|+|++|.++. +..-+.-.|.++.|+++.|.+.....+ ..-++|..|++++|.. ..+. +....-|+
T Consensus 282 TWq~LtelDLS~N~I~~---iDESvKL~Pkir~L~lS~N~i~~v~nL-a~L~~L~~LDLS~N~L---s~~~Gwh~KLGNI 354 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQ---IDESVKLAPKLRRLILSQNRIRTVQNL-AELPQLQLLDLSGNLL---AECVGWHLKLGNI 354 (490)
T ss_pred hHhhhhhccccccchhh---hhhhhhhccceeEEeccccceeeehhh-hhcccceEeecccchh---HhhhhhHhhhcCE
Confidence 35567777777776653 233344457777777777542211110 0125677777776652 1221 33456677
Q ss_pred eeEEEecCCCCcee-eeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhc
Q 012562 248 VSFNFLASWAPDFA-FEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHF 315 (461)
Q Consensus 248 ~~L~l~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~ 315 (461)
+.|.+.++...+.+ +..+=+|+.+++.-+... . .. -.+-++++|.++.|.+.+|.+..+.
T Consensus 355 KtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie--~-----ld-eV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 355 KTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIE--E-----LD-EVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred eeeehhhhhHhhhhhhHhhhhheeccccccchh--h-----HH-HhcccccccHHHHHhhcCCCccccc
Confidence 78877775443322 233445666666322110 0 11 1233567899999999988765443
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.75 E-value=0.006 Score=39.03 Aligned_cols=36 Identities=28% Similarity=0.375 Sum_probs=26.9
Q ss_pred CCccEEEeceeccccccccC-CC-ccccCcccEEEeeeEEEcC
Q 012562 145 ESLEALKLACRQLRMCVLKL-PF-SVGFSRLKSLDLHNVEFLD 185 (461)
Q Consensus 145 ~~L~~L~L~~~~~~~~~l~~-~~-~~~l~~L~~L~L~~~~~~~ 185 (461)
++|++|+|+++ .+.. |. +..|++|++|+++++.+++
T Consensus 1 ~~L~~L~l~~N-----~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNN-----QITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSS-----S-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCC-----CCcccCchHhCCCCCCEEEecCCCCCC
Confidence 46888888888 6666 44 7788999999998887764
No 54
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=95.70 E-value=0.0013 Score=70.58 Aligned_cols=16 Identities=19% Similarity=0.223 Sum_probs=8.9
Q ss_pred HhcCCCccEEEEecch
Q 012562 295 LNELCEVKALKLSTAF 310 (461)
Q Consensus 295 l~~l~~l~~L~l~~~~ 310 (461)
+.++.+++.|.+..+.
T Consensus 713 ~~~l~~L~~L~i~~~~ 728 (889)
T KOG4658|consen 713 LGSLGNLEELSILDCG 728 (889)
T ss_pred cccccCcceEEEEcCC
Confidence 3445566666665544
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.44 E-value=0.011 Score=53.91 Aligned_cols=87 Identities=18% Similarity=0.262 Sum_probs=61.1
Q ss_pred CCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcch
Q 012562 265 LDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVV 344 (461)
Q Consensus 265 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 344 (461)
+..+.++++..+.. ++ ...+..++..+|+++.|+|+.|.+.. ..+.+|....+|+.|-+......|..
T Consensus 70 ~~~v~elDL~~N~i-----Sd--WseI~~ile~lP~l~~LNls~N~L~s-----~I~~lp~p~~nl~~lVLNgT~L~w~~ 137 (418)
T KOG2982|consen 70 VTDVKELDLTGNLI-----SD--WSEIGAILEQLPALTTLNLSCNSLSS-----DIKSLPLPLKNLRVLVLNGTGLSWTQ 137 (418)
T ss_pred hhhhhhhhcccchh-----cc--HHHHHHHHhcCccceEeeccCCcCCC-----ccccCcccccceEEEEEcCCCCChhh
Confidence 44555555543322 11 56688889999999999999887542 13444435668898888766667777
Q ss_pred hhHhhhhccCCCcceEEEEec
Q 012562 345 PSIISLLNCSPNLEALTIYFE 365 (461)
Q Consensus 345 l~~~~lL~~~p~L~~L~l~~~ 365 (461)
... ++...|.++.|+++.+
T Consensus 138 ~~s--~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 138 STS--SLDDLPKVTELHMSDN 156 (418)
T ss_pred hhh--hhhcchhhhhhhhccc
Confidence 777 8888999998888775
No 56
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.36 E-value=0.002 Score=57.53 Aligned_cols=107 Identities=22% Similarity=0.158 Sum_probs=67.1
Q ss_pred cCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEe--c
Q 012562 143 TCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDIS--S 219 (461)
Q Consensus 143 ~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~--~ 219 (461)
....|..|++.++ .+.. ..+-.+|+|++|.++.+.+.....+..++..||+|.+|.+++|+++.+..+.-. -
T Consensus 41 ~~~~le~ls~~n~-----gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l 115 (260)
T KOG2739|consen 41 EFVELELLSVINV-----GLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKEL 115 (260)
T ss_pred cccchhhhhhhcc-----ceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhh
Confidence 3556777777776 5544 355578899999999884433336777788889999999999876543322211 1
Q ss_pred CCcCeEEEeccCCCCCCCeE--EEEecCCeeeEEEec
Q 012562 220 TSLKSLTLDNFGGDESGNYK--VKIACPNLVSFNFLA 254 (461)
Q Consensus 220 ~~L~~L~l~~~~~~~~~~~~--~~~~~p~L~~L~l~~ 254 (461)
++|..|.+.+|......... +..-+|+|++|+-.+
T Consensus 116 ~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred cchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 56777777777631111111 122367777776554
No 57
>PLN03150 hypothetical protein; Provisional
Probab=95.33 E-value=0.01 Score=62.16 Aligned_cols=81 Identities=21% Similarity=0.141 Sum_probs=47.5
Q ss_pred cccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEe-cCCcCeEEEeccCCCCCCCeEE-EEecCCeee
Q 012562 172 RLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDIS-STSLKSLTLDNFGGDESGNYKV-KIACPNLVS 249 (461)
Q Consensus 172 ~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~~-~~~~p~L~~ 249 (461)
.++.|+|.++.+.+ .+..-+..++.|+.|+|++|.+.+.....+. .++|+.|++.+|.+ .+.+.- .-.+++|++
T Consensus 419 ~v~~L~L~~n~L~g--~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~l--sg~iP~~l~~L~~L~~ 494 (623)
T PLN03150 419 FIDGLGLDNQGLRG--FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF--NGSIPESLGQLTSLRI 494 (623)
T ss_pred EEEEEECCCCCccc--cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCC--CCCCchHHhcCCCCCE
Confidence 36667777766654 3444466777777777777765443222222 36777777777764 223321 125677777
Q ss_pred EEEecCC
Q 012562 250 FNFLASW 256 (461)
Q Consensus 250 L~l~~~~ 256 (461)
|+++++.
T Consensus 495 L~Ls~N~ 501 (623)
T PLN03150 495 LNLNGNS 501 (623)
T ss_pred EECcCCc
Confidence 7777644
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.16 E-value=0.022 Score=49.01 Aligned_cols=83 Identities=22% Similarity=0.181 Sum_probs=58.8
Q ss_pred cCCCccEEEeceeccccccccC--CCc-cccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCc---eEEE
Q 012562 143 TCESLEALKLACRQLRMCVLKL--PFS-VGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDF---KILD 216 (461)
Q Consensus 143 ~~~~L~~L~L~~~~~~~~~l~~--~~~-~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~---~~~~ 216 (461)
..++|..|.|+++ .+.. |.. ..+|+|++|.|.+|.+-.-.++.. +..||.|++|++.++..... +.-.
T Consensus 62 ~l~rL~tLll~nN-----rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Npv~~k~~YR~yv 135 (233)
T KOG1644|consen 62 HLPRLHTLLLNNN-----RITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNPVEHKKNYRLYV 135 (233)
T ss_pred CccccceEEecCC-----cceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCchhcccCceeEE
Confidence 3678999999999 4444 433 358899999999987754434444 56899999999999874332 2222
Q ss_pred Ee-cCCcCeEEEeccC
Q 012562 217 IS-STSLKSLTLDNFG 231 (461)
Q Consensus 217 i~-~~~L~~L~l~~~~ 231 (461)
+. -|+|+.|++..-.
T Consensus 136 l~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 136 LYKLPSLRTLDFQKVT 151 (233)
T ss_pred EEecCcceEeehhhhh
Confidence 22 3889999887543
No 59
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.02 E-value=0.0053 Score=60.60 Aligned_cols=168 Identities=23% Similarity=0.232 Sum_probs=107.9
Q ss_pred CCeEEEEEEcceeeeCCCCcccCC-CccEEEeceeccccccccC-C-CccccCcccEEEeeeEEEcChhhHHHHhhcCcc
Q 012562 122 NVQVFDLTVYGEVTELPHCLVTCE-SLEALKLACRQLRMCVLKL-P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRL 198 (461)
Q Consensus 122 ~l~~L~l~~~~~~~~lp~~l~~~~-~L~~L~L~~~~~~~~~l~~-~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~ 198 (461)
.+..+++.... ...+|....... +|+.|+++++ .+.. + ....+++|+.|.+..+.+.+ +.......+.
T Consensus 117 ~l~~L~l~~n~-i~~i~~~~~~~~~nL~~L~l~~N-----~i~~l~~~~~~l~~L~~L~l~~N~l~~---l~~~~~~~~~ 187 (394)
T COG4886 117 NLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSDN-----KIESLPSPLRNLPNLKNLDLSFNDLSD---LPKLLSNLSN 187 (394)
T ss_pred ceeEEecCCcc-cccCccccccchhhccccccccc-----chhhhhhhhhccccccccccCCchhhh---hhhhhhhhhh
Confidence 46666664332 567777777774 9999999999 6665 3 56789999999999998774 4444447899
Q ss_pred ccceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCc--eeeeCCCCceEEEEEEE
Q 012562 199 LEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPD--FAFEDLDSLQNAFIFFD 276 (461)
Q Consensus 199 Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~--~~~~~~~~L~~l~l~~~ 276 (461)
|+.|+++++.+..+....-....|++|.+.++.. ...+...-...++..+.+.+..... ..+..+++++.+++.-+
T Consensus 188 L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~--~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n 265 (394)
T COG4886 188 LNNLDLSGNKISDLPPEIELLSALEELDLSNNSI--IELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN 265 (394)
T ss_pred hhheeccCCccccCchhhhhhhhhhhhhhcCCcc--eecchhhhhcccccccccCCceeeeccchhccccccceeccccc
Confidence 9999999986443332111223488888887741 1111112245566666655543333 34566777888888443
Q ss_pred eecCCCCchhhHHHHHHHHhcCCCccEEEEecchh
Q 012562 277 IIDRDERDNESCHILSKLLNELCEVKALKLSTAFL 311 (461)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~ 311 (461)
.. ..+.. +..+.+++.|.++++.+
T Consensus 266 ~i----------~~i~~-~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 266 QI----------SSISS-LGSLTNLRELDLSGNSL 289 (394)
T ss_pred cc----------ccccc-ccccCccCEEeccCccc
Confidence 22 11222 56778899999988754
No 60
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.93 E-value=0.00074 Score=60.65 Aligned_cols=35 Identities=20% Similarity=0.107 Sum_probs=16.7
Q ss_pred CCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEec
Q 012562 220 TSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLA 254 (461)
Q Consensus 220 ~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~ 254 (461)
++|+.|.+..|++.+...+....++|+|+.|.+..
T Consensus 63 trLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 63 TRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 33444444434332233333334677777776655
No 61
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=94.92 E-value=0.0018 Score=65.66 Aligned_cols=61 Identities=20% Similarity=0.248 Sum_probs=38.1
Q ss_pred CcccEEEEEEeccCCchh---HHHHHHHHHhcCCeEEEEE-EcceeeeCCCCcccCCCccEEEecee
Q 012562 93 VSIQRFRLYCLSYANDYT---VYRWVCAVARRNVQVFDLT-VYGEVTELPHCLVTCESLEALKLACR 155 (461)
Q Consensus 93 ~~i~~l~l~~~~~~~~~~---~~~wi~~~~~~~l~~L~l~-~~~~~~~lp~~l~~~~~L~~L~L~~~ 155 (461)
++++.|+.......+... +.+.++.. ...+.|.+. .+.....-|-.++...+|++|.|.+|
T Consensus 55 ~~~~~f~a~~s~~ads~vl~qLq~i~d~l--qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~ 119 (1096)
T KOG1859|consen 55 APVDYFRAYVSDNADSRVLEQLQRILDFL--QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGC 119 (1096)
T ss_pred CCCceeEEecCCcccchHHHHHHHHHHHH--hhheeeeecccCCCCCCCCceeccccceeeEEecCc
Confidence 678888887766444333 33333332 235556663 33322222888999999999999999
No 62
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.87 E-value=0.0039 Score=59.03 Aligned_cols=60 Identities=25% Similarity=0.304 Sum_probs=33.4
Q ss_pred cccCCCccEEEeceeccccccccC-C-CccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeee
Q 012562 141 LVTCESLEALKLACRQLRMCVLKL-P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCS 208 (461)
Q Consensus 141 l~~~~~L~~L~L~~~~~~~~~l~~-~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~ 208 (461)
+...++|+.|+|+++ .+.+ | ....+..|++|+++.+.|. .++..+--...||.+..+.++
T Consensus 431 l~~l~kLt~L~L~NN-----~Ln~LP~e~~~lv~Lq~LnlS~NrFr---~lP~~~y~lq~lEtllas~nq 492 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNN-----LLNDLPEEMGSLVRLQTLNLSFNRFR---MLPECLYELQTLETLLASNNQ 492 (565)
T ss_pred HHhhhcceeeecccc-----hhhhcchhhhhhhhhheecccccccc---cchHHHhhHHHHHHHHhcccc
Confidence 334666777777776 5555 4 3445566777777666654 334444334445555555544
No 63
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=94.81 E-value=0.079 Score=57.32 Aligned_cols=39 Identities=23% Similarity=0.142 Sum_probs=18.1
Q ss_pred ccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeee
Q 012562 167 SVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSC 207 (461)
Q Consensus 167 ~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c 207 (461)
+..+|.|+.|+|++|.-.. .++..++.+-+|+.|+++++
T Consensus 567 f~~m~~LrVLDLs~~~~l~--~LP~~I~~Li~LryL~L~~t 605 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLS--KLPSSIGELVHLRYLDLSDT 605 (889)
T ss_pred HhhCcceEEEECCCCCccC--cCChHHhhhhhhhcccccCC
Confidence 3345555555555432211 34444444555555555553
No 64
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=93.14 E-value=0.077 Score=50.91 Aligned_cols=37 Identities=24% Similarity=0.463 Sum_probs=33.2
Q ss_pred CCCCChHHHHHHhcCCC-hhHHHHHHHHhHhHHHhhcc
Q 012562 18 LCSLPEPVIHQIFSFME-TIDVVRASAVSRKWRYLWLS 54 (461)
Q Consensus 18 is~LPd~iL~~Ils~Lp-~~d~~~~s~vskrWr~lw~~ 54 (461)
.++||+|+|..|..+|| .-|.+|-+.||+.||.....
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 57899999999999997 57999999999999986554
No 65
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=93.02 E-value=0.065 Score=49.56 Aligned_cols=37 Identities=19% Similarity=0.615 Sum_probs=34.3
Q ss_pred CCCCCCCC----hHHHHHHhcCCChhHHHHHHHHhHhHHHh
Q 012562 15 GDRLCSLP----EPVIHQIFSFMETIDVVRASAVSRKWRYL 51 (461)
Q Consensus 15 ~D~is~LP----d~iL~~Ils~Lp~~d~~~~s~vskrWr~l 51 (461)
.|-|..|| |+|-..||++|...+...+-+|||+|+++
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~ 112 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV 112 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 56788999 99999999999999999999999999964
No 66
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=92.19 E-value=0.13 Score=47.35 Aligned_cols=36 Identities=22% Similarity=0.369 Sum_probs=30.9
Q ss_pred CCCCCCChHHHHHHhc-----CCChhHHHHHHHHhHhHHHh
Q 012562 16 DRLCSLPEPVIHQIFS-----FMETIDVVRASAVSRKWRYL 51 (461)
Q Consensus 16 D~is~LPd~iL~~Ils-----~Lp~~d~~~~s~vskrWr~l 51 (461)
+.|+.||||||..||. .|+.++..++|+|||.|+..
T Consensus 105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~ 145 (366)
T KOG2997|consen 105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC 145 (366)
T ss_pred hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH
Confidence 4578999999999997 45679999999999999853
No 67
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=90.25 E-value=0.21 Score=45.17 Aligned_cols=188 Identities=14% Similarity=0.049 Sum_probs=98.1
Q ss_pred CCCccEEEeceeccccccccC-------CCccccCcccEEEeeeEEEcCh---------hhHHHHhhcCccccceEEeee
Q 012562 144 CESLEALKLACRQLRMCVLKL-------PFSVGFSRLKSLDLHNVEFLDH---------NLLHKFVSSRRLLEKLILKSC 207 (461)
Q Consensus 144 ~~~L~~L~L~~~~~~~~~l~~-------~~~~~l~~L~~L~L~~~~~~~~---------~~l~~l~~~cp~Le~L~L~~c 207 (461)
..+++.++|+++ .+.. .....-.+|+.-++++. |++. ..+...+.+||.|+..+|++|
T Consensus 29 ~d~~~evdLSGN-----tigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 29 MDELVEVDLSGN-----TIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred hcceeEEeccCC-----cccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 557888888888 5544 12223345555555432 1211 122334557888888888886
Q ss_pred ecCCceEEEEecCCcCeEEEeccCCCCCCCeE-EEEecCCeeeEEEecCCCCcee----------------eeCCCCceE
Q 012562 208 SFRDFKILDISSTSLKSLTLDNFGGDESGNYK-VKIACPNLVSFNFLASWAPDFA----------------FEDLDSLQN 270 (461)
Q Consensus 208 ~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~-~~~~~p~L~~L~l~~~~~~~~~----------------~~~~~~L~~ 270 (461)
.+.. .. .+.+. ..-....|+.|.++.+...++. ..+.|.|+.
T Consensus 103 Afg~-~~--------------------~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~ 161 (388)
T COG5238 103 AFGS-EF--------------------PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEV 161 (388)
T ss_pred ccCc-cc--------------------chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceE
Confidence 4321 00 01111 1225667888888875544331 123466666
Q ss_pred EEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhcccc-ccccCCcccCcccEEEEEEeCC---Ccchhh
Q 012562 271 AFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLE-ERGFIPNSFNYLKSLVLSVSMA---DWVVPS 346 (461)
Q Consensus 271 l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~---~~~~l~ 346 (461)
+..+-+.. .+.+ .......+..=.+++.+.+..|.+..-.... ....+. ...+|+.|++..+.. ..-.+.
T Consensus 162 vicgrNRl--engs---~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~-y~~~LevLDlqDNtft~~gS~~La 235 (388)
T COG5238 162 VICGRNRL--ENGS---KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLF-YSHSLEVLDLQDNTFTLEGSRYLA 235 (388)
T ss_pred EEeccchh--ccCc---HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHH-HhCcceeeeccccchhhhhHHHHH
Confidence 66533221 1222 1223334444457888888887755210000 011122 456788888876654 233334
Q ss_pred HhhhhccCCCcceEEEEecc
Q 012562 347 IISLLNCSPNLEALTIYFEG 366 (461)
Q Consensus 347 ~~~lL~~~p~L~~L~l~~~~ 366 (461)
. .+..+|.|+.|.+..|.
T Consensus 236 ~--al~~W~~lrEL~lnDCl 253 (388)
T COG5238 236 D--ALCEWNLLRELRLNDCL 253 (388)
T ss_pred H--Hhcccchhhhccccchh
Confidence 3 66778888888887775
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=89.76 E-value=0.13 Score=46.21 Aligned_cols=38 Identities=29% Similarity=0.329 Sum_probs=16.9
Q ss_pred cCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeee
Q 012562 170 FSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCS 208 (461)
Q Consensus 170 l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~ 208 (461)
+|+|++|.|++|.+.+-..+.. +...++|..|++.+|.
T Consensus 90 ~P~l~~l~ls~Nki~~lstl~p-l~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 90 APNLKVLNLSGNKIKDLSTLRP-LKELENLKSLDLFNCS 127 (260)
T ss_pred CCceeEEeecCCccccccccch-hhhhcchhhhhcccCC
Confidence 3555555555555443211111 2334445555555554
No 69
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=89.52 E-value=0.0062 Score=61.97 Aligned_cols=34 Identities=26% Similarity=0.272 Sum_probs=15.3
Q ss_pred CCccEEEeceeccccccccC-CCccccCcccEEEeeeEEE
Q 012562 145 ESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEF 183 (461)
Q Consensus 145 ~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~ 183 (461)
+.|++|+|+.| .+.. .....|+.|++|+|+.|..
T Consensus 187 ~ale~LnLshN-----k~~~v~~Lr~l~~LkhLDlsyN~L 221 (1096)
T KOG1859|consen 187 PALESLNLSHN-----KFTKVDNLRRLPKLKHLDLSYNCL 221 (1096)
T ss_pred HHhhhhccchh-----hhhhhHHHHhcccccccccccchh
Confidence 34445555555 3333 2333445555555554443
No 70
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=88.70 E-value=0.05 Score=54.05 Aligned_cols=103 Identities=25% Similarity=0.153 Sum_probs=55.7
Q ss_pred cccCCCccEEEeceeccccccccC-CC-ccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEe
Q 012562 141 LVTCESLEALKLACRQLRMCVLKL-PF-SVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDIS 218 (461)
Q Consensus 141 l~~~~~L~~L~L~~~~~~~~~l~~-~~-~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~ 218 (461)
+..+.+|..|++..+ .+.. .. ...+++|++|+|+++.+++-..+ ..++.|+.|++.+|.+..+.....
T Consensus 91 l~~~~~l~~l~l~~n-----~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l----~~l~~L~~L~l~~N~i~~~~~~~~- 160 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDN-----KIEKIENLLSSLVNLQVLDLSFNKITKLEGL----STLTLLKELNLSGNLISDISGLES- 160 (414)
T ss_pred cccccceeeeecccc-----chhhcccchhhhhcchheeccccccccccch----hhccchhhheeccCcchhccCCcc-
Confidence 445677777887777 5555 33 56677788888877777654222 334557777777765333221111
Q ss_pred cCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEec
Q 012562 219 STSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLA 254 (461)
Q Consensus 219 ~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~ 254 (461)
.++|+.+.+..+.+...+... ....++|+.+.+.+
T Consensus 161 l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~ 195 (414)
T KOG0531|consen 161 LKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGG 195 (414)
T ss_pred chhhhcccCCcchhhhhhhhh-hhhccchHHHhccC
Confidence 345555555555431111100 12344555555555
No 71
>PF13013 F-box-like_2: F-box-like domain
Probab=86.50 E-value=1.2 Score=34.70 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=26.9
Q ss_pred CCCCCChHHHHHHhcCCChhHHHHHHHHhH
Q 012562 17 RLCSLPEPVIHQIFSFMETIDVVRASAVSR 46 (461)
Q Consensus 17 ~is~LPd~iL~~Ils~Lp~~d~~~~s~vsk 46 (461)
.+.+||+||+..|+.+-...+...+...++
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 588999999999999999999988887776
No 72
>PRK15386 type III secretion protein GogB; Provisional
Probab=85.57 E-value=1.5 Score=42.86 Aligned_cols=131 Identities=17% Similarity=0.222 Sum_probs=64.1
Q ss_pred cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccc
Q 012562 121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLL 199 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~L 199 (461)
+++++|+++.. ....+|. --++|++|.+++|. .+.. |.. -.++|++|++.+|.... .+ -+.|
T Consensus 52 ~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~----nLtsLP~~-LP~nLe~L~Ls~Cs~L~--sL------P~sL 114 (426)
T PRK15386 52 RASGRLYIKDC-DIESLPV---LPNELTEITIENCN----NLTTLPGS-IPEGLEKLTVCHCPEIS--GL------PESV 114 (426)
T ss_pred cCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCC----CcccCCch-hhhhhhheEccCccccc--cc------cccc
Confidence 67888888543 2333441 12368888888872 2322 221 13578888888763211 11 2457
Q ss_pred cceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEE-EecCCeeeEEEecCCCCceeeeCC-CCceEEEEE
Q 012562 200 EKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVK-IACPNLVSFNFLASWAPDFAFEDL-DSLQNAFIF 274 (461)
Q Consensus 200 e~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~-~~~p~L~~L~l~~~~~~~~~~~~~-~~L~~l~l~ 274 (461)
+.|.+..+... .+..-.++|+.|.+..+.. ....... .--++|++|.+.++...... ..+ .+|+.+.++
T Consensus 115 e~L~L~~n~~~---~L~~LPssLk~L~I~~~n~--~~~~~lp~~LPsSLk~L~Is~c~~i~LP-~~LP~SLk~L~ls 185 (426)
T PRK15386 115 RSLEIKGSATD---SIKNVPNGLTSLSINSYNP--ENQARIDNLISPSLKTLSLTGCSNIILP-EKLPESLQSITLH 185 (426)
T ss_pred ceEEeCCCCCc---ccccCcchHhheecccccc--ccccccccccCCcccEEEecCCCcccCc-ccccccCcEEEec
Confidence 77777643211 1122224677777643221 0000000 11246788888764432211 112 356666663
No 73
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=85.22 E-value=0.15 Score=50.61 Aligned_cols=61 Identities=25% Similarity=0.191 Sum_probs=28.6
Q ss_pred ccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEecCCcCeEEEeccC
Q 012562 167 SVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFG 231 (461)
Q Consensus 167 ~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~ 231 (461)
...+.+|+.|+|..+.+.. +..++.++++|+.|+|+++.+..+..+.- .+.|+.|.+.+|.
T Consensus 91 l~~~~~l~~l~l~~n~i~~---i~~~l~~~~~L~~L~ls~N~I~~i~~l~~-l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEK---IENLLSSLVNLQVLDLSFNKITKLEGLST-LTLLKELNLSGNL 151 (414)
T ss_pred cccccceeeeeccccchhh---cccchhhhhcchheeccccccccccchhh-ccchhhheeccCc
Confidence 3445555555555555442 22224455566666666554333222111 1225555555555
No 74
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=84.22 E-value=0.043 Score=54.57 Aligned_cols=65 Identities=20% Similarity=0.178 Sum_probs=33.5
Q ss_pred eCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeee
Q 012562 136 ELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCS 208 (461)
Q Consensus 136 ~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~ 208 (461)
.+|..+.++..|+.|+|+.+ .+.. |....+=-|+.|-+.++.++.- ..-+...+.|..|+.+.|.
T Consensus 112 ~ip~~i~~L~~lt~l~ls~N-----qlS~lp~~lC~lpLkvli~sNNkl~~l---p~~ig~~~tl~~ld~s~ne 177 (722)
T KOG0532|consen 112 TIPEAICNLEALTFLDLSSN-----QLSHLPDGLCDLPLKVLIVSNNKLTSL---PEEIGLLPTLAHLDVSKNE 177 (722)
T ss_pred ecchhhhhhhHHHHhhhccc-----hhhcCChhhhcCcceeEEEecCccccC---CcccccchhHHHhhhhhhh
Confidence 45555555666666666666 4433 3222333456666665554421 2123345666666666654
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.52 E-value=0.6 Score=40.48 Aligned_cols=69 Identities=22% Similarity=0.267 Sum_probs=46.8
Q ss_pred eeCCCCcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeee
Q 012562 135 TELPHCLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCS 208 (461)
Q Consensus 135 ~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~ 208 (461)
+.+|..-..--.++.++=+++ .+.. .....+++++.|.+..+...++..+..+-...|+||.|+|++|+
T Consensus 91 ~~lp~~~~~~~~IeaVDAsds-----~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~ 162 (221)
T KOG3864|consen 91 FSLPGPNADNVKIEAVDASDS-----SIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCP 162 (221)
T ss_pred ecCCCCCCCcceEEEEecCCc-----hHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCC
Confidence 344543222224555555555 3322 24557788889999999887776888877788999999999985
No 76
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=82.87 E-value=0.64 Score=47.53 Aligned_cols=38 Identities=32% Similarity=0.562 Sum_probs=35.6
Q ss_pred CCCCCCCCChHHHHHHhcCCChhHHHHHHHHhHhHHHh
Q 012562 14 DGDRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYL 51 (461)
Q Consensus 14 ~~D~is~LPd~iL~~Ils~Lp~~d~~~~s~vskrWr~l 51 (461)
..|.|+.||-|+-.+||++|+.++.++++.+|+.|+.+
T Consensus 104 ~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 104 QRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred ccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 46889999999999999999999999999999999965
No 77
>PRK15386 type III secretion protein GogB; Provisional
Probab=82.54 E-value=1.6 Score=42.69 Aligned_cols=54 Identities=13% Similarity=0.109 Sum_probs=27.5
Q ss_pred ccCcccEEEeeeEEEcChhhHHHHhhcCc-cccceEEeeeecCCceEEEEecCCcCeEEEecc
Q 012562 169 GFSRLKSLDLHNVEFLDHNLLHKFVSSRR-LLEKLILKSCSFRDFKILDISSTSLKSLTLDNF 230 (461)
Q Consensus 169 ~l~~L~~L~L~~~~~~~~~~l~~l~~~cp-~Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~ 230 (461)
.++++++|+++++.++. ++ ..| +|+.|.+.+|......+ ..-.++|++|.+..|
T Consensus 50 ~~~~l~~L~Is~c~L~s---LP----~LP~sLtsL~Lsnc~nLtsLP-~~LP~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDCDIES---LP----VLPNELTEITIENCNNLTTLP-GSIPEGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCCCCcc---cC----CCCCCCcEEEccCCCCcccCC-chhhhhhhheEccCc
Confidence 35677777777664432 22 223 47777777664211000 011246777777765
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=78.87 E-value=0.92 Score=24.38 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=10.5
Q ss_pred CcccEEEeeeEEEcChhhHHH
Q 012562 171 SRLKSLDLHNVEFLDHNLLHK 191 (461)
Q Consensus 171 ~~L~~L~L~~~~~~~~~~l~~ 191 (461)
++|++|+|.++.++++ .+..
T Consensus 2 ~~L~~L~l~~n~i~~~-g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE-GASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHH-HHHH
T ss_pred CCCCEEEccCCcCCHH-HHHH
Confidence 5666666666666655 4433
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.89 E-value=0.23 Score=43.00 Aligned_cols=78 Identities=18% Similarity=0.251 Sum_probs=44.4
Q ss_pred EEEeeeEEEcChhhHHHHhhcCccccceEEeeeecC---CceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEE
Q 012562 175 SLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFR---DFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFN 251 (461)
Q Consensus 175 ~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~---~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~ 251 (461)
.++=++..+... ++.+ +.+++.++.|.+.+|... ++..+.-..++|+.|.++.|.-++...+......++|+.|.
T Consensus 105 aVDAsds~I~~e-Gle~-L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 105 AVDASDSSIMYE-GLEH-LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEecCCchHHHH-HHHH-HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 333344444444 5555 568999999999998732 23333335577888877766532222222222456666666
Q ss_pred Eec
Q 012562 252 FLA 254 (461)
Q Consensus 252 l~~ 254 (461)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 655
No 80
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=61.43 E-value=4.8 Score=22.05 Aligned_cols=11 Identities=36% Similarity=0.622 Sum_probs=5.0
Q ss_pred CcccEEEeeeE
Q 012562 171 SRLKSLDLHNV 181 (461)
Q Consensus 171 ~~L~~L~L~~~ 181 (461)
++|++|+|.++
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34444444444
No 81
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=60.58 E-value=1.2 Score=36.33 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=15.5
Q ss_pred CCccEEEeceeccccccccC-C-CccccCcccEEEeeeEEEc
Q 012562 145 ESLEALKLACRQLRMCVLKL-P-FSVGFSRLKSLDLHNVEFL 184 (461)
Q Consensus 145 ~~L~~L~L~~~~~~~~~l~~-~-~~~~l~~L~~L~L~~~~~~ 184 (461)
++++.|+|.++ .+.+ | .+..++.|+.|++..|.+.
T Consensus 77 ~t~t~lNl~~n-----eisdvPeE~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 77 PTATTLNLANN-----EISDVPEELAAMPALRSLNLRFNPLN 113 (177)
T ss_pred chhhhhhcchh-----hhhhchHHHhhhHHhhhcccccCccc
Confidence 34455555554 3333 2 2334444555544444443
No 82
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=58.08 E-value=0.09 Score=52.82 Aligned_cols=41 Identities=22% Similarity=0.112 Sum_probs=20.0
Q ss_pred CCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCC
Q 012562 299 CEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMA 340 (461)
Q Consensus 299 ~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 340 (461)
..++.+++..|.+...........++ ..++++.|.+..+..
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~-~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLV-SCRQLEELSLSNNPL 302 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHh-hhHHHHHhhcccCcc
Confidence 34566666666544322222223333 444666666655543
No 83
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=54.69 E-value=6.5 Score=22.06 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=12.7
Q ss_pred CcccEEEeeeEEEcChhhHHH
Q 012562 171 SRLKSLDLHNVEFLDHNLLHK 191 (461)
Q Consensus 171 ~~L~~L~L~~~~~~~~~~l~~ 191 (461)
++|++|+|++|.+.++ ....
T Consensus 2 ~~L~~LdL~~N~i~~~-G~~~ 21 (28)
T smart00368 2 PSLRELDLSNNKLGDE-GARA 21 (28)
T ss_pred CccCEEECCCCCCCHH-HHHH
Confidence 4577777777777665 4443
No 84
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=49.65 E-value=9.4 Score=19.91 Aligned_cols=9 Identities=44% Similarity=0.494 Sum_probs=5.0
Q ss_pred ccEEEecee
Q 012562 147 LEALKLACR 155 (461)
Q Consensus 147 L~~L~L~~~ 155 (461)
|++|+|++|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 455555555
No 85
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=49.63 E-value=13 Score=28.32 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=22.2
Q ss_pred CCCCCCChHHHHHHhcCCChhHHHH
Q 012562 16 DRLCSLPEPVIHQIFSFMETIDVVR 40 (461)
Q Consensus 16 D~is~LPd~iL~~Ils~Lp~~d~~~ 40 (461)
..++.||.||-..||++|+-+|...
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 5788999999999999999988654
No 86
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=48.08 E-value=4.7 Score=32.98 Aligned_cols=56 Identities=23% Similarity=0.231 Sum_probs=38.8
Q ss_pred CCccEEEeceeccccccccC-C-Ccc-ccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeee
Q 012562 145 ESLEALKLACRQLRMCVLKL-P-FSV-GFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCS 208 (461)
Q Consensus 145 ~~L~~L~L~~~~~~~~~l~~-~-~~~-~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~ 208 (461)
..|+..+|+++ .+.. | .+. .+|-+++|+|.++.+.+ ++.-++..|.|+.|.+.+|.
T Consensus 53 ~el~~i~ls~N-----~fk~fp~kft~kf~t~t~lNl~~neisd---vPeE~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 53 YELTKISLSDN-----GFKKFPKKFTIKFPTATTLNLANNEISD---VPEELAAMPALRSLNLRFNP 111 (177)
T ss_pred ceEEEEecccc-----hhhhCCHHHhhccchhhhhhcchhhhhh---chHHHhhhHHhhhcccccCc
Confidence 35666777777 6665 3 333 46788888888887764 23337778888888888864
No 87
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=42.42 E-value=3.8 Score=41.40 Aligned_cols=100 Identities=16% Similarity=0.148 Sum_probs=46.2
Q ss_pred CCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC--CCccccCcccEEEeeeEEEcChhhHHHHhhcCccc
Q 012562 122 NVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL--PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLL 199 (461)
Q Consensus 122 ~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~--~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~L 199 (461)
.++.|-++.+ ....+|..++...+|..|+.+.| .+.. +....+.+|+.|.+..+.+.+ .... +. +=-|
T Consensus 144 pLkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~n-----ei~slpsql~~l~slr~l~vrRn~l~~--lp~E-l~-~LpL 213 (722)
T KOG0532|consen 144 PLKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKN-----EIQSLPSQLGYLTSLRDLNVRRNHLED--LPEE-LC-SLPL 213 (722)
T ss_pred cceeEEEecC-ccccCCcccccchhHHHhhhhhh-----hhhhchHHhhhHHHHHHHHHhhhhhhh--CCHH-Hh-CCce
Confidence 3444443322 24455666665566666666666 4433 244455566666655554432 1122 22 2335
Q ss_pred cceEEeeeecCCceEEEEecCCcCeEEEeccC
Q 012562 200 EKLILKSCSFRDFKILDISSTSLKSLTLDNFG 231 (461)
Q Consensus 200 e~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~ 231 (461)
..|+++.|.+.-+-.-......|++|.+.+|.
T Consensus 214 i~lDfScNkis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 214 IRLDFSCNKISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred eeeecccCceeecchhhhhhhhheeeeeccCC
Confidence 55555554321111001112456666666554
No 88
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=40.09 E-value=15 Score=19.88 Aligned_cols=13 Identities=38% Similarity=0.652 Sum_probs=6.8
Q ss_pred CcccEEEeeeEEE
Q 012562 171 SRLKSLDLHNVEF 183 (461)
Q Consensus 171 ~~L~~L~L~~~~~ 183 (461)
++|++|+|.+|.+
T Consensus 2 ~~L~~L~L~~N~l 14 (26)
T smart00370 2 PNLRELDLSNNQL 14 (26)
T ss_pred CCCCEEECCCCcC
Confidence 4555555555544
No 89
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=40.09 E-value=15 Score=19.88 Aligned_cols=13 Identities=38% Similarity=0.652 Sum_probs=6.8
Q ss_pred CcccEEEeeeEEE
Q 012562 171 SRLKSLDLHNVEF 183 (461)
Q Consensus 171 ~~L~~L~L~~~~~ 183 (461)
++|++|+|.+|.+
T Consensus 2 ~~L~~L~L~~N~l 14 (26)
T smart00369 2 PNLRELDLSNNQL 14 (26)
T ss_pred CCCCEEECCCCcC
Confidence 4555555555544
No 90
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=37.38 E-value=12 Score=34.01 Aligned_cols=48 Identities=17% Similarity=0.217 Sum_probs=33.5
Q ss_pred CCCCCCChHHHHHHhcCCC-hhHHHHHHHHhHh------HHHhhccCCeeEeecC
Q 012562 16 DRLCSLPEPVIHQIFSFME-TIDVVRASAVSRK------WRYLWLSVPYLSFDMS 63 (461)
Q Consensus 16 D~is~LPd~iL~~Ils~Lp-~~d~~~~s~vskr------Wr~lw~~~~~l~~~~~ 63 (461)
--+.+||.|++..|+.+|| -+|.+.++.+-.. =+.+|+....++|...
T Consensus 200 ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~er 254 (332)
T KOG3926|consen 200 LTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNER 254 (332)
T ss_pred CCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3588999999999999998 5788777755322 2355666555555443
No 91
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=32.82 E-value=31 Score=27.26 Aligned_cols=63 Identities=16% Similarity=0.222 Sum_probs=28.0
Q ss_pred CCCcc-cCCCccEEEeceeccccccccCCCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEee
Q 012562 138 PHCLV-TCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKS 206 (461)
Q Consensus 138 p~~l~-~~~~L~~L~L~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~ 206 (461)
+...+ .|.+|+.+.+... ...+....+..+++|+++.+... +.. --...+.+|+.|+.+.+..
T Consensus 4 ~~~~F~~~~~l~~i~~~~~---~~~I~~~~F~~~~~l~~i~~~~~-~~~--i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPNT---IKKIGENAFSNCTSLKSINFPNN-LTS--IGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp -TTTTTT-TT--EEEETST-----EE-TTTTTT-TT-SEEEESST-TSC--E-TTTTTT-TT-EEEEETS
T ss_pred CHHHHhCCCCCCEEEECCC---eeEeChhhccccccccccccccc-ccc--cceeeeecccccccccccc
Confidence 34444 3677888777643 11233345566767777777653 221 1123356677777777743
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=31.94 E-value=38 Score=34.33 Aligned_cols=67 Identities=24% Similarity=0.087 Sum_probs=42.3
Q ss_pred HHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCC------CcchhhHhhhhccCCCcceEE
Q 012562 290 ILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMA------DWVVPSIISLLNCSPNLEALT 361 (461)
Q Consensus 290 ~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~------~~~~l~~~~lL~~~p~L~~L~ 361 (461)
.+..+....|+|+.|.|++|.... ....+...+ ....|++|.+..+.. ..+.+.. +-..+|+|..|+
T Consensus 235 ~~sslsq~apklk~L~LS~N~~~~-~~~~el~K~--k~l~Leel~l~GNPlc~tf~~~s~yv~~--i~~~FPKL~~LD 307 (585)
T KOG3763|consen 235 ALSSLSQIAPKLKTLDLSHNHSKI-SSESELDKL--KGLPLEELVLEGNPLCTTFSDRSEYVSA--IRELFPKLLRLD 307 (585)
T ss_pred hhhHHHHhcchhheeecccchhhh-cchhhhhhh--cCCCHHHeeecCCccccchhhhHHHHHH--HHHhcchheeec
Confidence 467777889999999999983321 111112211 344688999877642 3344444 567899988774
No 93
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=25.08 E-value=24 Score=33.23 Aligned_cols=39 Identities=31% Similarity=0.455 Sum_probs=33.7
Q ss_pred CCCCChHHHHHHhcCCChhHHHHHHHHhHhHHHhhccCC
Q 012562 18 LCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLSVP 56 (461)
Q Consensus 18 is~LPd~iL~~Ils~Lp~~d~~~~s~vskrWr~lw~~~~ 56 (461)
+..+|+++++.|++++.-+++++.+.+|+|-..+-...|
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~ 46 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLP 46 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhhhhccc
Confidence 457999999999999999999999999999987644443
No 94
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=23.97 E-value=39 Score=18.69 Aligned_cols=13 Identities=31% Similarity=0.524 Sum_probs=6.2
Q ss_pred CcccEEEeeeEEE
Q 012562 171 SRLKSLDLHNVEF 183 (461)
Q Consensus 171 ~~L~~L~L~~~~~ 183 (461)
.+|+.|+|..|.+
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 3445555554444
No 95
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=22.67 E-value=44 Score=33.94 Aligned_cols=12 Identities=42% Similarity=0.584 Sum_probs=6.0
Q ss_pred cCcccEEEeeeE
Q 012562 170 FSRLKSLDLHNV 181 (461)
Q Consensus 170 l~~L~~L~L~~~ 181 (461)
.|+|++|+|+++
T Consensus 243 apklk~L~LS~N 254 (585)
T KOG3763|consen 243 APKLKTLDLSHN 254 (585)
T ss_pred cchhheeecccc
Confidence 445555555544
Done!