Query 012562
Match_columns 461
No_of_seqs 203 out of 2392
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 11:51:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012562.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012562hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogk_B Coronatine-insensitive 99.9 1.5E-21 5.1E-26 201.8 11.9 274 14-307 5-350 (592)
2 2p1m_B Transport inhibitor res 99.8 2E-21 6.8E-26 200.9 7.6 38 14-51 2-40 (594)
3 2ast_B S-phase kinase-associat 99.8 2.5E-21 8.5E-26 185.6 2.1 141 14-207 5-152 (336)
4 4fcg_A Uncharacterized protein 99.4 1.1E-13 3.7E-18 131.8 3.3 201 115-366 75-288 (328)
5 2z80_A TOLL-like receptor 2, v 99.3 3E-12 1E-16 123.2 8.4 264 121-412 52-331 (353)
6 4fmz_A Internalin; leucine ric 99.2 3.1E-12 1.1E-16 122.6 2.3 251 121-420 66-319 (347)
7 1ogq_A PGIP-2, polygalacturona 99.2 5.8E-13 2E-17 125.9 -3.4 80 122-208 77-160 (313)
8 2z66_A Variable lymphocyte rec 99.2 1.6E-12 5.6E-17 122.3 -0.7 247 134-407 19-273 (306)
9 2id5_A Lingo-1, leucine rich r 99.2 2.6E-12 9E-17 128.8 0.6 220 121-366 80-307 (477)
10 3zyi_A Leucine-rich repeat-con 99.2 5.2E-13 1.8E-17 133.0 -4.6 220 121-366 75-301 (452)
11 2p1m_B Transport inhibitor res 99.2 5.8E-12 2E-16 129.8 2.7 105 94-207 106-221 (594)
12 3zyj_A Leucine-rich repeat-con 99.1 6E-13 2.1E-17 132.1 -5.8 221 121-367 64-291 (440)
13 3rgz_A Protein brassinosteroid 99.1 4.8E-12 1.7E-16 134.4 0.6 219 121-366 100-329 (768)
14 3v47_A TOLL-like receptor 5B a 99.1 4E-13 1.4E-17 133.8 -7.3 127 94-232 31-166 (455)
15 1o6v_A Internalin A; bacterial 99.1 2.4E-11 8.3E-16 121.4 5.6 247 121-421 90-340 (466)
16 2ast_B S-phase kinase-associat 99.1 1.2E-12 4.2E-17 124.9 -4.1 212 112-366 37-258 (336)
17 2id5_A Lingo-1, leucine rich r 99.1 7.6E-12 2.6E-16 125.4 1.4 219 121-366 56-283 (477)
18 4fmz_A Internalin; leucine ric 99.1 5.1E-12 1.7E-16 121.1 -0.1 270 93-420 66-341 (347)
19 1ogq_A PGIP-2, polygalacturona 99.1 5.1E-13 1.7E-17 126.3 -7.1 218 121-366 50-279 (313)
20 3v47_A TOLL-like receptor 5B a 99.1 5.1E-12 1.7E-16 125.8 -0.4 259 121-409 79-422 (455)
21 3t6q_A CD180 antigen; protein- 99.1 3.1E-13 1.1E-17 139.7 -9.6 210 136-366 292-511 (606)
22 1o6v_A Internalin A; bacterial 99.1 1.9E-11 6.6E-16 122.1 3.4 248 121-422 68-319 (466)
23 2ca6_A RAN GTPase-activating p 99.1 1E-12 3.4E-17 128.1 -6.4 234 121-366 32-314 (386)
24 4fcg_A Uncharacterized protein 99.1 1.1E-11 3.8E-16 117.8 0.7 223 144-420 80-309 (328)
25 2z81_A CD282 antigen, TOLL-lik 99.1 1.1E-10 3.7E-15 119.1 7.3 226 121-366 26-262 (549)
26 3oja_B Anopheles plasmodium-re 99.1 7.9E-12 2.7E-16 128.9 -1.8 81 121-208 75-158 (597)
27 2z63_A TOLL-like receptor 4, v 99.1 5.7E-11 1.9E-15 121.7 3.9 215 122-366 283-505 (570)
28 3rgz_A Protein brassinosteroid 99.0 5.6E-12 1.9E-16 133.9 -4.4 228 121-366 394-691 (768)
29 3ogk_B Coronatine-insensitive 99.0 5.2E-10 1.8E-14 115.1 10.4 261 140-420 265-546 (592)
30 3vq2_A TLR4, TOLL-like recepto 99.0 7.9E-12 2.7E-16 129.2 -3.3 138 121-273 285-431 (606)
31 3t6q_A CD180 antigen; protein- 99.0 8.6E-12 3E-16 128.9 -3.5 266 121-413 301-578 (606)
32 2z80_A TOLL-like receptor 2, v 99.0 2.5E-10 8.6E-15 109.6 6.7 132 134-274 43-182 (353)
33 2z7x_B TOLL-like receptor 1, v 99.0 4.5E-11 1.5E-15 121.2 1.4 96 94-208 46-149 (520)
34 1xku_A Decorin; proteoglycan, 99.0 2.7E-11 9.1E-16 115.3 -0.6 142 121-273 76-223 (330)
35 3o6n_A APL1; leucine-rich repe 99.0 9.4E-11 3.2E-15 114.3 3.0 258 121-420 69-347 (390)
36 3vq2_A TLR4, TOLL-like recepto 99.0 4.3E-11 1.5E-15 123.7 0.2 108 243-365 326-434 (606)
37 1ozn_A Reticulon 4 receptor; N 99.0 3.7E-11 1.2E-15 111.8 -0.5 197 145-366 32-236 (285)
38 3o6n_A APL1; leucine-rich repe 99.0 1.9E-11 6.6E-16 119.2 -2.8 269 121-421 45-327 (390)
39 2z63_A TOLL-like receptor 4, v 99.0 3.6E-11 1.2E-15 123.2 -1.0 222 122-367 305-530 (570)
40 3oja_A Leucine-rich immune mol 99.0 5.2E-11 1.8E-15 119.4 0.2 209 122-367 35-249 (487)
41 4eco_A Uncharacterized protein 99.0 3.1E-11 1.1E-15 125.3 -1.6 146 121-274 206-385 (636)
42 1xku_A Decorin; proteoglycan, 99.0 1.1E-11 3.7E-16 118.0 -4.8 216 122-366 53-274 (330)
43 3j0a_A TOLL-like receptor 5; m 99.0 1E-10 3.6E-15 125.4 2.1 83 121-209 73-160 (844)
44 1z7x_W Ribonuclease inhibitor; 99.0 1.7E-12 6E-17 129.4 -11.0 313 94-420 57-406 (461)
45 3bz5_A Internalin-J, INLJ; leu 99.0 1.5E-10 5.3E-15 115.0 3.1 134 121-273 42-177 (457)
46 1h6u_A Internalin H; cell adhe 99.0 7.3E-11 2.5E-15 111.1 0.7 137 121-273 41-180 (308)
47 4ecn_A Leucine-rich repeat pro 99.0 5.3E-11 1.8E-15 126.5 -0.6 147 121-275 448-628 (876)
48 3oja_A Leucine-rich immune mol 99.0 4E-11 1.4E-15 120.3 -1.5 189 143-367 32-226 (487)
49 3o53_A Protein LRIM1, AGAP0063 99.0 2.9E-11 9.8E-16 114.4 -2.5 103 296-420 166-270 (317)
50 3j0a_A TOLL-like receptor 5; m 99.0 9.6E-10 3.3E-14 117.9 9.0 104 121-231 266-373 (844)
51 4eco_A Uncharacterized protein 99.0 5.2E-12 1.8E-16 131.1 -8.4 178 167-366 202-413 (636)
52 1z7x_W Ribonuclease inhibitor; 98.9 1.4E-12 4.6E-17 130.2 -13.3 310 94-420 86-435 (461)
53 2ft3_A Biglycan; proteoglycan, 98.9 2.1E-11 7E-16 116.2 -4.6 14 352-365 261-274 (332)
54 3o53_A Protein LRIM1, AGAP0063 98.9 4.2E-11 1.4E-15 113.3 -2.6 222 109-367 20-249 (317)
55 2z66_A Variable lymphocyte rec 98.9 2.1E-12 7.3E-17 121.6 -11.7 223 122-367 29-260 (306)
56 2ca6_A RAN GTPase-activating p 98.9 2.7E-11 9.2E-16 117.9 -4.6 92 136-232 23-134 (386)
57 2z81_A CD282 antigen, TOLL-lik 98.9 9.4E-10 3.2E-14 112.1 6.3 113 134-255 17-133 (549)
58 3oja_B Anopheles plasmodium-re 98.9 3.8E-11 1.3E-15 123.8 -4.1 145 121-274 51-200 (597)
59 2z62_A TOLL-like receptor 4, v 98.9 2.2E-10 7.4E-15 106.0 1.2 199 146-367 29-236 (276)
60 3g06_A SSPH2 (leucine-rich rep 98.9 3.4E-09 1.2E-13 108.9 9.7 111 298-438 200-310 (622)
61 3a79_B TLR6, VLRB.59, TOLL-lik 98.9 7.7E-09 2.6E-13 105.7 12.1 82 121-209 76-158 (562)
62 1h6u_A Internalin H; cell adhe 98.9 2.8E-10 9.5E-15 107.1 0.5 187 143-366 39-228 (308)
63 4ecn_A Leucine-rich repeat pro 98.9 1.2E-10 4.1E-15 123.8 -2.4 226 121-366 548-787 (876)
64 2z7x_B TOLL-like receptor 1, v 98.9 8.2E-10 2.8E-14 111.8 3.8 242 144-420 189-476 (520)
65 3bz5_A Internalin-J, INLJ; leu 98.9 3.1E-10 1.1E-14 112.8 0.4 184 140-365 37-222 (457)
66 2ft3_A Biglycan; proteoglycan, 98.8 1.7E-11 5.9E-16 116.8 -8.6 219 121-366 78-305 (332)
67 3goz_A Leucine-rich repeat-con 98.8 4.9E-11 1.7E-15 115.0 -6.1 74 290-366 186-264 (362)
68 3zyi_A Leucine-rich repeat-con 98.8 2.3E-10 7.9E-15 113.8 -1.6 193 121-339 99-301 (452)
69 1wwl_A Monocyte differentiatio 98.8 5.3E-10 1.8E-14 105.4 0.2 64 293-366 222-285 (312)
70 3zyj_A Leucine-rich repeat-con 98.8 2.4E-10 8.3E-15 113.2 -2.3 193 121-339 88-290 (440)
71 2o6q_A Variable lymphocyte rec 98.8 7E-10 2.4E-14 102.2 0.7 65 136-209 30-97 (270)
72 3rfs_A Internalin B, repeat mo 98.8 1.6E-10 5.4E-15 106.8 -3.9 61 141-208 59-120 (272)
73 1fs1_A SKP2 F-BOX, cyclin A/CD 98.8 3.9E-09 1.3E-13 70.6 4.0 40 14-53 5-44 (53)
74 4glp_A Monocyte differentiatio 98.8 3.2E-10 1.1E-14 106.8 -2.5 107 94-208 65-180 (310)
75 1ziw_A TOLL-like receptor 3; i 98.8 3.7E-10 1.3E-14 118.3 -2.4 180 171-366 381-571 (680)
76 1h6t_A Internalin B; cell adhe 98.8 2.2E-09 7.7E-14 100.0 3.1 77 122-209 47-124 (291)
77 1p9a_G Platelet glycoprotein I 98.8 3.8E-10 1.3E-14 105.2 -2.4 104 142-256 7-111 (290)
78 3g06_A SSPH2 (leucine-rich rep 98.7 1.3E-08 4.6E-13 104.5 8.4 229 120-421 39-270 (622)
79 3a79_B TLR6, VLRB.59, TOLL-lik 98.7 1.2E-09 4.2E-14 111.7 -0.0 75 121-208 100-180 (562)
80 1ziw_A TOLL-like receptor 3; i 98.7 3E-10 1E-14 119.0 -4.8 228 121-366 353-595 (680)
81 1ozn_A Reticulon 4 receptor; N 98.7 8E-10 2.7E-14 102.7 -2.1 197 121-339 32-236 (285)
82 1m9s_A Internalin B; cell inva 98.7 3.7E-09 1.3E-13 108.4 1.3 147 141-340 61-209 (605)
83 4ezg_A Putative uncharacterize 98.7 2.2E-09 7.6E-14 93.9 -0.4 80 121-209 44-124 (197)
84 3goz_A Leucine-rich repeat-con 98.7 6.6E-10 2.3E-14 107.1 -4.5 225 137-394 14-263 (362)
85 2o6q_A Variable lymphocyte rec 98.6 8.3E-10 2.8E-14 101.8 -3.8 175 121-339 37-216 (270)
86 1h6t_A Internalin B; cell adhe 98.6 9.4E-09 3.2E-13 95.8 2.8 165 143-339 44-211 (291)
87 2xwt_C Thyrotropin receptor; s 98.6 2.9E-09 1E-13 96.1 -1.0 55 299-364 179-235 (239)
88 2z62_A TOLL-like receptor 4, v 98.6 5E-09 1.7E-13 96.8 0.5 211 171-410 28-252 (276)
89 2xwt_C Thyrotropin receptor; s 98.6 8.9E-09 3E-13 92.9 2.0 190 146-392 32-234 (239)
90 3rfs_A Internalin B, repeat mo 98.6 1.1E-09 3.7E-14 101.1 -4.3 189 143-365 39-232 (272)
91 1xeu_A Internalin C; cellular 98.6 1.7E-08 5.7E-13 92.5 2.7 146 141-339 37-183 (263)
92 1wwl_A Monocyte differentiatio 98.5 3.3E-09 1.1E-13 100.0 -3.4 195 119-339 93-307 (312)
93 1m9s_A Internalin B; cell inva 98.5 5.5E-09 1.9E-13 107.1 -2.7 146 120-312 64-210 (605)
94 1p9a_G Platelet glycoprotein I 98.5 3.5E-09 1.2E-13 98.6 -4.1 189 122-338 11-205 (290)
95 1xeu_A Internalin C; cellular 98.4 2.6E-08 8.9E-13 91.3 0.1 164 144-366 18-183 (263)
96 1jl5_A Outer protein YOPM; leu 98.4 5.5E-08 1.9E-12 96.5 2.5 133 121-273 131-264 (454)
97 4g8a_A TOLL-like receptor 4; l 98.4 9.3E-08 3.2E-12 98.9 4.3 127 122-256 53-184 (635)
98 2ell_A Acidic leucine-rich nuc 98.4 1.6E-08 5.6E-13 85.8 -1.5 128 121-255 24-157 (168)
99 4glp_A Monocyte differentiatio 98.4 7E-08 2.4E-12 90.7 2.6 154 143-312 143-307 (310)
100 4ezg_A Putative uncharacterize 98.4 2E-07 6.7E-12 81.3 5.1 142 94-255 45-191 (197)
101 3m19_A Variable lymphocyte rec 98.4 6.3E-09 2.2E-13 94.7 -4.7 160 135-339 27-190 (251)
102 2je0_A Acidic leucine-rich nuc 98.4 1E-08 3.6E-13 85.1 -3.7 104 121-231 17-124 (149)
103 3m19_A Variable lymphocyte rec 98.4 3.5E-08 1.2E-12 89.7 -0.8 130 121-258 35-168 (251)
104 3cvr_A Invasion plasmid antige 98.4 1.2E-07 4.1E-12 96.2 2.8 191 120-347 58-249 (571)
105 3cvr_A Invasion plasmid antige 98.3 8.8E-08 3E-12 97.2 1.4 177 144-367 58-242 (571)
106 1jl5_A Outer protein YOPM; leu 98.3 2.2E-08 7.5E-13 99.4 -3.2 138 197-366 111-248 (454)
107 2ell_A Acidic leucine-rich nuc 98.3 9.8E-08 3.4E-12 80.9 -0.5 58 144-210 23-84 (168)
108 2ra8_A Uncharacterized protein 98.2 3.1E-07 1.1E-11 87.8 1.6 83 168-253 136-227 (362)
109 4g8a_A TOLL-like receptor 4; l 98.2 1.4E-07 4.9E-12 97.5 -0.8 103 295-412 490-597 (635)
110 3e6j_A Variable lymphocyte rec 98.1 2.9E-07 1E-11 82.3 -0.6 119 145-273 40-166 (229)
111 4ay9_X Follicle-stimulating ho 98.1 1.1E-06 3.9E-11 83.8 3.5 217 121-364 30-255 (350)
112 3un9_A NLR family member X1; l 98.1 5.5E-08 1.9E-12 93.7 -5.8 75 291-366 175-250 (372)
113 1ds9_A Outer arm dynein; leuci 98.1 1.9E-08 6.6E-13 87.9 -8.3 105 140-254 43-149 (198)
114 3e6j_A Variable lymphocyte rec 98.1 4.8E-07 1.6E-11 80.9 0.1 127 121-255 40-169 (229)
115 2v9t_B SLIT homolog 2 protein 98.1 3.6E-07 1.2E-11 81.2 -0.8 104 167-273 52-159 (220)
116 1a9n_A U2A', U2A'; complex (nu 98.1 1.7E-07 6E-12 80.0 -2.8 58 143-209 17-76 (176)
117 2v70_A SLIT-2, SLIT homolog 2 98.0 5.7E-07 1.9E-11 79.9 -0.6 105 167-274 53-161 (220)
118 2o6s_A Variable lymphocyte rec 98.0 6.8E-07 2.3E-11 78.5 -0.5 32 243-274 122-156 (208)
119 2je0_A Acidic leucine-rich nuc 98.0 1.5E-07 5.3E-12 77.9 -5.0 79 144-231 16-99 (149)
120 2v9t_B SLIT homolog 2 protein 98.0 7.6E-07 2.6E-11 79.0 -1.0 125 122-255 33-162 (220)
121 4ay9_X Follicle-stimulating ho 97.9 2.2E-06 7.5E-11 81.9 1.4 112 134-254 21-137 (350)
122 3e4g_A ATP synthase subunit S, 97.9 1.6E-06 5.4E-11 73.1 0.4 68 135-208 51-125 (176)
123 2e31_A FBS1, F-box only protei 97.9 5.2E-06 1.8E-10 75.8 3.7 38 15-52 48-86 (297)
124 2o6s_A Variable lymphocyte rec 97.9 1.8E-06 6E-11 75.8 -0.2 126 145-310 28-159 (208)
125 2ra8_A Uncharacterized protein 97.8 4.3E-06 1.5E-10 79.9 2.0 216 76-346 91-325 (362)
126 2xot_A Amphoterin-induced prot 97.8 2.8E-06 9.7E-11 81.4 0.1 79 122-208 40-123 (361)
127 3l2o_B F-box only protein 4; s 97.8 5.2E-06 1.8E-10 74.9 1.6 35 17-51 4-38 (312)
128 1a9n_A U2A', U2A'; complex (nu 97.8 3E-06 1E-10 72.2 -0.7 139 165-366 13-151 (176)
129 3un9_A NLR family member X1; l 97.7 2E-07 6.9E-12 89.7 -9.4 58 145-208 101-166 (372)
130 1w8a_A SLIT protein; signaling 97.7 3.9E-06 1.3E-10 72.7 -1.3 88 135-231 21-113 (192)
131 2wfh_A SLIT homolog 2 protein 97.6 6.8E-06 2.3E-10 71.2 -0.0 102 146-255 32-136 (193)
132 2v70_A SLIT-2, SLIT homolog 2 97.6 8.1E-06 2.8E-10 72.3 -0.2 127 122-256 33-164 (220)
133 2o6r_A Variable lymphocyte rec 97.5 1.5E-05 5.3E-10 67.8 0.5 105 145-257 28-136 (177)
134 1w8a_A SLIT protein; signaling 97.5 9.6E-06 3.3E-10 70.1 -1.0 81 122-210 30-115 (192)
135 1dce_A Protein (RAB geranylger 97.5 8.8E-06 3E-10 82.8 -1.8 79 122-211 442-522 (567)
136 2wfh_A SLIT homolog 2 protein 97.5 8.1E-06 2.8E-10 70.7 -2.0 100 170-273 30-133 (193)
137 3v7d_B Cell division control p 97.5 3.2E-05 1.1E-09 76.3 1.9 41 14-54 11-51 (464)
138 3e4g_A ATP synthase subunit S, 97.4 3.8E-05 1.3E-09 64.7 1.5 81 122-208 62-150 (176)
139 2o6r_A Variable lymphocyte rec 97.4 1.6E-05 5.6E-10 67.6 -0.8 120 147-274 9-132 (177)
140 2xot_A Amphoterin-induced prot 97.3 5.4E-05 1.9E-09 72.4 1.4 84 121-211 64-150 (361)
141 3g39_A Variable lymphocyte rec 97.3 9.4E-05 3.2E-09 62.5 2.6 87 136-231 23-113 (170)
142 1dce_A Protein (RAB geranylger 97.3 3.8E-05 1.3E-09 78.0 -0.1 84 121-211 463-547 (567)
143 2r9u_A Variable lymphocyte rec 97.3 0.00011 3.7E-09 62.3 2.7 88 135-231 25-116 (174)
144 2ovr_B FBW7, F-BOX/WD repeat p 97.2 0.00016 5.6E-09 70.9 3.7 38 14-51 15-52 (445)
145 1p22_A F-BOX/WD-repeat protein 97.2 0.00011 3.7E-09 72.1 1.8 38 14-51 7-48 (435)
146 2r9u_A Variable lymphocyte rec 97.1 6.9E-05 2.4E-09 63.5 0.2 101 147-256 14-116 (174)
147 3g39_A Variable lymphocyte rec 97.1 7.4E-05 2.5E-09 63.1 0.2 102 146-256 10-113 (170)
148 1ds9_A Outer arm dynein; leuci 97.1 0.00017 5.8E-09 62.5 2.4 101 120-231 47-151 (198)
149 3sb4_A Hypothetical leucine ri 97.1 0.0016 5.6E-08 61.1 9.3 61 295-365 246-307 (329)
150 4b8c_D Glucose-repressible alc 97.1 3.4E-05 1.2E-09 81.0 -2.8 104 141-256 220-327 (727)
151 4b8c_D Glucose-repressible alc 97.0 3.6E-05 1.2E-09 80.7 -3.1 102 121-232 224-328 (727)
152 2ifg_A High affinity nerve gro 97.0 9.8E-05 3.3E-09 70.1 -0.1 91 134-232 21-115 (347)
153 1io0_A Tropomodulin; LRR prote 97.0 0.00021 7.3E-09 61.2 1.8 74 291-365 85-161 (185)
154 3sb4_A Hypothetical leucine ri 96.8 0.0006 2.1E-08 64.1 3.4 66 290-364 217-283 (329)
155 4fdw_A Leucine rich hypothetic 96.1 0.00068 2.3E-08 65.6 -1.0 14 193-206 222-235 (401)
156 2ifg_A High affinity nerve gro 95.7 0.0028 9.7E-08 59.9 1.4 80 122-210 32-116 (347)
157 1io0_A Tropomodulin; LRR prote 95.5 0.0046 1.6E-07 52.7 2.0 130 288-422 25-161 (185)
158 3rw6_A Nuclear RNA export fact 95.3 0.0032 1.1E-07 56.9 0.4 78 121-203 170-257 (267)
159 4fdw_A Leucine rich hypothetic 95.2 0.0011 3.8E-08 64.2 -3.4 63 136-207 126-190 (401)
160 3rw6_A Nuclear RNA export fact 93.8 0.017 5.8E-07 52.2 1.2 62 293-361 190-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 86.7 0.04 1.4E-06 47.1 -3.2 37 172-208 71-109 (197)
162 1pgv_A TMD-1, tropomodulin TMD 80.8 0.82 2.8E-05 38.9 2.5 130 288-422 30-167 (197)
163 4gt6_A Cell surface protein; l 77.2 1.1 3.7E-05 42.8 2.5 15 296-310 354-368 (394)
164 4gt6_A Cell surface protein; l 65.7 4.2 0.00014 38.6 3.7 98 122-230 266-367 (394)
165 4fs7_A Uncharacterized protein 58.4 5.3 0.00018 37.8 2.9 76 121-206 230-306 (394)
166 3rfe_A Platelet glycoprotein I 58.3 6.9 0.00024 30.5 3.1 44 136-186 24-70 (130)
167 3rfe_A Platelet glycoprotein I 55.0 3.8 0.00013 32.0 1.0 37 171-209 31-67 (130)
168 4fs7_A Uncharacterized protein 51.0 6 0.00021 37.4 1.9 81 137-229 288-375 (394)
169 4h09_A Hypothetical leucine ri 47.8 7.9 0.00027 36.2 2.2 78 122-206 241-319 (379)
170 4h09_A Hypothetical leucine ri 33.9 21 0.00073 33.2 2.8 78 122-207 218-296 (379)
171 2agh_C Zinc finger protein HRX 21.3 43 0.0015 17.8 1.3 22 396-417 4-25 (31)
No 1
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.85 E-value=1.5e-21 Score=201.77 Aligned_cols=274 Identities=12% Similarity=0.116 Sum_probs=140.6
Q ss_pred CCCCCC----CCChHHHHHHhcCC-ChhHHHHHHHHhHhHHHhhccCCe-eEeecCCcCCCcc-----------------
Q 012562 14 DGDRLC----SLPEPVIHQIFSFM-ETIDVVRASAVSRKWRYLWLSVPY-LSFDMSTISSNPQ----------------- 70 (461)
Q Consensus 14 ~~D~is----~LPd~iL~~Ils~L-p~~d~~~~s~vskrWr~lw~~~~~-l~~~~~~~~~~~~----------------- 70 (461)
+.|+++ +||||||.+||+|| |.+|++++++|||||++++...+. +.+.. .+.....
T Consensus 5 ~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~L~~L~L~~~ 83 (592)
T 3ogk_B 5 DIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMAL-CYTATPDRLSRRFPNLRSLKLKGK 83 (592)
T ss_dssp -------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESC-GGGSCHHHHHHHCTTCSEEEEECS
T ss_pred hhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEee-ccccChHHHHHhCCCCeEEEecCC
Confidence 345655 89999999999999 899999999999999988643321 22111 1110000
Q ss_pred -chh-------cHhH-HHHHHHHHHhcCCCCCcccEEEEEEeccCCchhHHHHHHHHHhcCCeEEEEEEcce--eeeCCC
Q 012562 71 -EIW-------SHEK-FKDFVNWVLLSQSGSVSIQRFRLYCLSYANDYTVYRWVCAVARRNVQVFDLTVYGE--VTELPH 139 (461)
Q Consensus 71 -~~~-------~~~~-~~~~v~~~l~~~~~~~~i~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~--~~~lp~ 139 (461)
... .... ....+..+.... +.++.+.++.... .+..-.|+......++++|++..... ...++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~L~~L~L~~~~i--~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~ 158 (592)
T 3ogk_B 84 PRAAMFNLIPENWGGYVTPWVTEISNNL---RQLKSVHFRRMIV--SDLDLDRLAKARADDLETLKLDKCSGFTTDGLLS 158 (592)
T ss_dssp CGGGGGTCSCTTSCCBCHHHHHHHHHHC---TTCCEEEEESCBC--CHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHH
T ss_pred cchhhcccccccccccchHHHHHHHhhC---CCCCeEEeeccEe--cHHHHHHHHHhccccCcEEECcCCCCcCHHHHHH
Confidence 000 0000 000111111111 2355555554321 12223344443334477777743221 112222
Q ss_pred CcccCCCccEEEeceeccccccccCC-------CccccCcccEEEeeeEEEc--ChhhHHHHhhcCccccceEEeeeecC
Q 012562 140 CLVTCESLEALKLACRQLRMCVLKLP-------FSVGFSRLKSLDLHNVEFL--DHNLLHKFVSSRRLLEKLILKSCSFR 210 (461)
Q Consensus 140 ~l~~~~~L~~L~L~~~~~~~~~l~~~-------~~~~l~~L~~L~L~~~~~~--~~~~l~~l~~~cp~Le~L~L~~c~~~ 210 (461)
.+..|++|++|+|++| .+.+. ....+++|++|+|.++.++ +...+..++.+||+|+.|+|.+|...
T Consensus 159 ~~~~~~~L~~L~L~~~-----~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~ 233 (592)
T 3ogk_B 159 IVTHCRKIKTLLMEES-----SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL 233 (592)
T ss_dssp HHHHCTTCSEEECTTC-----EEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG
T ss_pred HHhhCCCCCEEECccc-----cccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH
Confidence 2335778888888877 44331 1235778888888777765 22367777788888888888887643
Q ss_pred CceEEEEecCCcCeEEEeccCCC------------------------CCCCeE-EEEecCCeeeEEEecCCCCcee----
Q 012562 211 DFKILDISSTSLKSLTLDNFGGD------------------------ESGNYK-VKIACPNLVSFNFLASWAPDFA---- 261 (461)
Q Consensus 211 ~~~~~~i~~~~L~~L~l~~~~~~------------------------~~~~~~-~~~~~p~L~~L~l~~~~~~~~~---- 261 (461)
++.......++|++|.+..+... ....+. +.-.+++|++|.++++......
T Consensus 234 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~ 313 (592)
T 3ogk_B 234 ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTL 313 (592)
T ss_dssp GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHH
T ss_pred HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHH
Confidence 32211111245555555422100 011111 1113567777777775432221
Q ss_pred eeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEe
Q 012562 262 FEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLS 307 (461)
Q Consensus 262 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~ 307 (461)
+..+++|+.+++.-+ .. ...+..++..+++|+.|++.
T Consensus 314 ~~~~~~L~~L~L~~~-------~~--~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 314 IQKCPNLEVLETRNV-------IG--DRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp HTTCTTCCEEEEEGG-------GH--HHHHHHHHHHCTTCCEEEEE
T ss_pred HHhCcCCCEEeccCc-------cC--HHHHHHHHHhCCCCCEEEee
Confidence 356777777777511 01 33455666677777777777
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.83 E-value=2e-21 Score=200.89 Aligned_cols=38 Identities=29% Similarity=0.516 Sum_probs=29.4
Q ss_pred CCCCCCCCChHHHHHHhcCCC-hhHHHHHHHHhHhHHHh
Q 012562 14 DGDRLCSLPEPVIHQIFSFME-TIDVVRASAVSRKWRYL 51 (461)
Q Consensus 14 ~~D~is~LPd~iL~~Ils~Lp-~~d~~~~s~vskrWr~l 51 (461)
..|++++||||||.+||+||| .+|++++++|||||+++
T Consensus 2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 358999999999999999999 99999999999999987
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.81 E-value=2.5e-21 Score=185.62 Aligned_cols=141 Identities=18% Similarity=0.230 Sum_probs=90.9
Q ss_pred CCCCCCCCChHHHHHHhcCCChhHHHHHHHHhHhHHHhhcc---CCeeEeecCCcCCCccchhcHhHHHHHHHHHHhcCC
Q 012562 14 DGDRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLS---VPYLSFDMSTISSNPQEIWSHEKFKDFVNWVLLSQS 90 (461)
Q Consensus 14 ~~D~is~LPd~iL~~Ils~Lp~~d~~~~s~vskrWr~lw~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~ 90 (461)
+...+++||||++.+||++|+.+|+++++.|||+|+.+... ...+++....+.
T Consensus 5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~------------------------ 60 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLH------------------------ 60 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCC------------------------
T ss_pred ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCC------------------------
Confidence 35668999999999999999999999999999999998532 112222211110
Q ss_pred CCCcccEEEEEEeccCCchhHHHHHHHHHhcCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC---C-C
Q 012562 91 GSVSIQRFRLYCLSYANDYTVYRWVCAVARRNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL---P-F 166 (461)
Q Consensus 91 ~~~~i~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~-~ 166 (461)
...+.....++++.+++.... ....+..++.+++|++|+|++| .+.. + .
T Consensus 61 ---------------------~~~~~~~~~~~l~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~~-----~l~~~~~~~~ 113 (336)
T 2ast_B 61 ---------------------PDVTGRLLSQGVIAFRCPRSF-MDQPLAEHFSPFRVQHMDLSNS-----VIEVSTLHGI 113 (336)
T ss_dssp ---------------------HHHHHHHHHTTCSEEECTTCE-ECSCCCSCCCCBCCCEEECTTC-----EECHHHHHHH
T ss_pred ---------------------HHHHHhhhhccceEEEcCCcc-ccccchhhccCCCCCEEEccCC-----CcCHHHHHHH
Confidence 112333334566667663332 1223334566788888888888 4332 1 3
Q ss_pred ccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeee
Q 012562 167 SVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSC 207 (461)
Q Consensus 167 ~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c 207 (461)
...+++|++|+|.++.+++. ....+..||+|++|+|++|
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~--~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDP--IVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHH--HHHHHTTCTTCSEEECTTC
T ss_pred HhhCCCCCEEeCcCcccCHH--HHHHHhcCCCCCEEECCCC
Confidence 45677888888887776553 3344566888888888877
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.38 E-value=1.1e-13 Score=131.80 Aligned_cols=201 Identities=17% Similarity=0.119 Sum_probs=116.9
Q ss_pred HHHHHhcCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-C-CccccCcccEEEeeeEEEcChhhHHHH
Q 012562 115 VCAVARRNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-P-FSVGFSRLKSLDLHNVEFLDHNLLHKF 192 (461)
Q Consensus 115 i~~~~~~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~-~~~~l~~L~~L~L~~~~~~~~~~l~~l 192 (461)
+......++++|++..... ..+|..++.+++|++|+|++| .+.. | .+..+++|++|+|.++.+.. +...
T Consensus 75 l~~~~~~~l~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~n-----~l~~lp~~~~~l~~L~~L~Ls~n~l~~---lp~~ 145 (328)
T 4fcg_A 75 LEDATQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAA-----GLMELPDTMQQFAGLETLTLARNPLRA---LPAS 145 (328)
T ss_dssp HHHHTSTTCCEEEEESSCC-SSCCSCGGGGTTCSEEEEESS-----CCCCCCSCGGGGTTCSEEEEESCCCCC---CCGG
T ss_pred HhcccccceeEEEccCCCc-hhcChhhhhCCCCCEEECCCC-----CccchhHHHhccCCCCEEECCCCcccc---CcHH
Confidence 3334446889999876553 388998999999999999999 5544 4 56789999999999998762 3445
Q ss_pred hhcCccccceEEeeeecCCceEEEE----------ecCCcCeEEEeccCCCCCCCeE-EEEecCCeeeEEEecCCCCcee
Q 012562 193 VSSRRLLEKLILKSCSFRDFKILDI----------SSTSLKSLTLDNFGGDESGNYK-VKIACPNLVSFNFLASWAPDFA 261 (461)
Q Consensus 193 ~~~cp~Le~L~L~~c~~~~~~~~~i----------~~~~L~~L~l~~~~~~~~~~~~-~~~~~p~L~~L~l~~~~~~~~~ 261 (461)
+.+++.|+.|+|++|...+.....+ ..++|+.|.+..|.+. .+. ..-.+++|++|.++++.....
T Consensus 146 l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~---~lp~~l~~l~~L~~L~L~~N~l~~l- 221 (328)
T 4fcg_A 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR---SLPASIANLQNLKSLKIRNSPLSAL- 221 (328)
T ss_dssp GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC---CCCGGGGGCTTCCEEEEESSCCCCC-
T ss_pred HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC---cchHhhcCCCCCCEEEccCCCCCcC-
Confidence 7889999999999986433211110 1355555555555431 111 011344555555554322211
Q ss_pred eeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCC
Q 012562 262 FEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMAD 341 (461)
Q Consensus 262 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~ 341 (461)
...+..+++|+.|++++|.+.. ..+..+. .+++|++|++..|...
T Consensus 222 ------------------------------~~~l~~l~~L~~L~Ls~n~~~~----~~p~~~~-~l~~L~~L~L~~n~~~ 266 (328)
T 4fcg_A 222 ------------------------------GPAIHHLPKLEELDLRGCTALR----NYPPIFG-GRAPLKRLILKDCSNL 266 (328)
T ss_dssp ------------------------------CGGGGGCTTCCEEECTTCTTCC----BCCCCTT-CCCCCCEEECTTCTTC
T ss_pred ------------------------------chhhccCCCCCEEECcCCcchh----hhHHHhc-CCCCCCEEECCCCCch
Confidence 1113456666666666654321 1122233 4556666666554332
Q ss_pred cchhhHhhhhccCCCcceEEEEecc
Q 012562 342 WVVPSIISLLNCSPNLEALTIYFEG 366 (461)
Q Consensus 342 ~~~l~~~~lL~~~p~L~~L~l~~~~ 366 (461)
..... -+..+++|+.|+|..+.
T Consensus 267 ~~~p~---~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 267 LTLPL---DIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp CBCCT---TGGGCTTCCEEECTTCT
T ss_pred hhcch---hhhcCCCCCEEeCCCCC
Confidence 22211 24556666666666654
No 5
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.31 E-value=3e-12 Score=123.19 Aligned_cols=264 Identities=15% Similarity=0.100 Sum_probs=171.6
Q ss_pred cCCeEEEEEEcceeeeCCC-CcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcC
Q 012562 121 RNVQVFDLTVYGEVTELPH-CLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSR 196 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~c 196 (461)
+++++|+++.... ..+|. .+..+++|++|+|+++ .+.. ..+..+++|++|+|.++.+++ .....+.++
T Consensus 52 ~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~L~~n-----~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l 123 (353)
T 2z80_A 52 EAVKSLDLSNNRI-TYISNSDLQRCVNLQALVLTSN-----GINTIEEDSFSSLGSLEHLDLSYNYLSN--LSSSWFKPL 123 (353)
T ss_dssp TTCCEEECTTSCC-CEECTTTTTTCTTCCEEECTTS-----CCCEECTTTTTTCTTCCEEECCSSCCSS--CCHHHHTTC
T ss_pred ccCcEEECCCCcC-cccCHHHhccCCCCCEEECCCC-----ccCccCHhhcCCCCCCCEEECCCCcCCc--CCHhHhCCC
Confidence 4789999865542 34555 5667999999999999 5544 346789999999999998875 334557889
Q ss_pred ccccceEEeeeecCCceE-EEE-ecCCcCeEEEeccCCCCCCCeE-EE-EecCCeeeEEEecCCCCce---eeeCCCCce
Q 012562 197 RLLEKLILKSCSFRDFKI-LDI-SSTSLKSLTLDNFGGDESGNYK-VK-IACPNLVSFNFLASWAPDF---AFEDLDSLQ 269 (461)
Q Consensus 197 p~Le~L~L~~c~~~~~~~-~~i-~~~~L~~L~l~~~~~~~~~~~~-~~-~~~p~L~~L~l~~~~~~~~---~~~~~~~L~ 269 (461)
++|++|++++|.+..+.. -.+ ..++|++|.+.+|.. .+.+. .. -.+++|++|.++++..... .+..+++|+
T Consensus 124 ~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~--~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 201 (353)
T 2z80_A 124 SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT--FTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVS 201 (353)
T ss_dssp TTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSS--CCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred ccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcc--ccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCC
Confidence 999999999987654433 112 248899999998742 11111 01 1468999999998655443 356678888
Q ss_pred EEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhh-Hh
Q 012562 270 NAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPS-II 348 (461)
Q Consensus 270 ~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~-~~ 348 (461)
++++..+.. ......++..+++++.|++++|.+....... ..... ....++.+++..+......+. ..
T Consensus 202 ~L~l~~n~l---------~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-l~~~~-~~~~l~~l~L~~~~l~~~~l~~l~ 270 (353)
T 2z80_A 202 HLILHMKQH---------ILLLEIFVDVTSSVECLELRDTDLDTFHFSE-LSTGE-TNSLIKKFTFRNVKITDESLFQVM 270 (353)
T ss_dssp EEEEECSCS---------TTHHHHHHHHTTTEEEEEEESCBCTTCCCC--------CCCCCCEEEEESCBCCHHHHHHHH
T ss_pred eecCCCCcc---------ccchhhhhhhcccccEEECCCCccccccccc-ccccc-ccchhhccccccccccCcchhhhH
Confidence 888854422 1112334566899999999999876432211 11112 356788888877654332221 11
Q ss_pred hhhccCCCcceEEEEeccCCCccccccCcCcc--ccccceeEEEEE--eecCChhHHHHHHHHHhcCc
Q 012562 349 SLLNCSPNLEALTIYFEGEDCDDWKISNKSIF--CLTCHLKTVELI--HVAGDENELELVRFLLKNGH 412 (461)
Q Consensus 349 ~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~--~~~~~Lk~v~i~--~~~g~~~e~~~~~~ll~~a~ 412 (461)
..+..+++|+.|++..+.-. .++.. ..+++|+++.+. .+.+....+..+...+++..
T Consensus 271 ~~l~~l~~L~~L~Ls~N~l~-------~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~~~ 331 (353)
T 2z80_A 271 KLLNQISGLLELEFSRNQLK-------SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNS 331 (353)
T ss_dssp HHHHTCTTCCEEECCSSCCC-------CCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTT
T ss_pred HHHhcccCCCEEECCCCCCC-------ccCHHHHhcCCCCCEEEeeCCCccCcCCCcHHHHHHHHhcc
Confidence 25788999999999887531 12111 235778888887 55566655666555555443
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.20 E-value=3.1e-12 Score=122.64 Aligned_cols=251 Identities=14% Similarity=0.109 Sum_probs=123.1
Q ss_pred cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccc
Q 012562 121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLL 199 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~L 199 (461)
+++++|++.... ...+|. +..+++|++|+|++| .+.. +.+..+++|++|+|.++.+.+. .. +..++.|
T Consensus 66 ~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~L~~n-----~i~~~~~~~~l~~L~~L~l~~n~i~~~---~~-~~~l~~L 134 (347)
T 4fmz_A 66 TNLEYLNLNGNQ-ITDISP-LSNLVKLTNLYIGTN-----KITDISALQNLTNLRELYLNEDNISDI---SP-LANLTKM 134 (347)
T ss_dssp TTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-----CCCCCGGGTTCTTCSEEECTTSCCCCC---GG-GTTCTTC
T ss_pred CCccEEEccCCc-cccchh-hhcCCcCCEEEccCC-----cccCchHHcCCCcCCEEECcCCcccCc---hh-hccCCce
Confidence 456666664332 222333 445666666666666 4433 3455566666666666655543 11 5566666
Q ss_pred cceEEeeeecC-CceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCcee-eeCCCCceEEEEEEEe
Q 012562 200 EKLILKSCSFR-DFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFA-FEDLDSLQNAFIFFDI 277 (461)
Q Consensus 200 e~L~L~~c~~~-~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~-~~~~~~L~~l~l~~~~ 277 (461)
+.|++++|... .... -...++|++|.+.++...+... .-.+++|++|.++++...... +..+++|+.+++..+.
T Consensus 135 ~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~ 210 (347)
T 4fmz_A 135 YSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP---IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQ 210 (347)
T ss_dssp CEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG---GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSC
T ss_pred eEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh---hccCCCCCEEEccCCcccccccccCCCccceeecccCC
Confidence 66666665311 1111 0112556666666555311111 114566666666664433222 4455666666663221
Q ss_pred ecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCc
Q 012562 278 IDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNL 357 (461)
Q Consensus 278 ~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L 357 (461)
. .. ... +..+++++.|+++++.+..+.. +. .+++|++|+++.+....- . .+..+|+|
T Consensus 211 l--~~--------~~~-~~~~~~L~~L~l~~n~l~~~~~------~~-~l~~L~~L~l~~n~l~~~--~---~~~~l~~L 267 (347)
T 4fmz_A 211 I--TD--------ITP-VANMTRLNSLKIGNNKITDLSP------LA-NLSQLTWLEIGTNQISDI--N---AVKDLTKL 267 (347)
T ss_dssp C--CC--------CGG-GGGCTTCCEEECCSSCCCCCGG------GT-TCTTCCEEECCSSCCCCC--G---GGTTCTTC
T ss_pred C--CC--------Cch-hhcCCcCCEEEccCCccCCCcc------hh-cCCCCCEEECCCCccCCC--h---hHhcCCCc
Confidence 1 00 001 4556677777777765442211 22 455777777765543221 1 34566777
Q ss_pred ceEEEEeccCCCccccccCcCccccccceeEEEEEeecCChhHHHHHHHHHhcCcCcceEEEE
Q 012562 358 EALTIYFEGEDCDDWKISNKSIFCLTCHLKTVELIHVAGDENELELVRFLLKNGHVLKKLSFS 420 (461)
Q Consensus 358 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~Lk~v~i~~~~g~~~e~~~~~~ll~~a~~Le~~~i~ 420 (461)
+.|++..+.-.. .+.....++|+.+.+.+-.-.. .....+.+.+.|+.+.+.
T Consensus 268 ~~L~l~~n~l~~-------~~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~ 319 (347)
T 4fmz_A 268 KMLNVGSNQISD-------ISVLNNLSQLNSLFLNNNQLGN----EDMEVIGGLTNLTTLFLS 319 (347)
T ss_dssp CEEECCSSCCCC-------CGGGGGCTTCSEEECCSSCCCG----GGHHHHHTCTTCSEEECC
T ss_pred CEEEccCCccCC-------ChhhcCCCCCCEEECcCCcCCC----cChhHhhccccCCEEEcc
Confidence 777776654210 1011233556666665322111 111233566777777666
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.19 E-value=5.8e-13 Score=125.92 Aligned_cols=80 Identities=16% Similarity=0.176 Sum_probs=38.2
Q ss_pred CCeEEEEE-EcceeeeCCCCcccCCCccEEEeceeccccccccC--C-CccccCcccEEEeeeEEEcChhhHHHHhhcCc
Q 012562 122 NVQVFDLT-VYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL--P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR 197 (461)
Q Consensus 122 ~l~~L~l~-~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~--~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp 197 (461)
.+++|+++ .+.....+|..+..+++|++|+|+++ .+.. | .+..+++|++|+|.++.+.+ .+...+..++
T Consensus 77 ~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n-----~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~ 149 (313)
T 1ogq_A 77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT-----NVSGAIPDFLSQIKTLVTLDFSYNALSG--TLPPSISSLP 149 (313)
T ss_dssp TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE-----CCEEECCGGGGGCTTCCEEECCSSEEES--CCCGGGGGCT
T ss_pred CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCC-----eeCCcCCHHHhCCCCCCEEeCCCCccCC--cCChHHhcCC
Confidence 45555554 24333445555555555555555555 3321 2 23445555555555555543 1222344455
Q ss_pred cccceEEeeee
Q 012562 198 LLEKLILKSCS 208 (461)
Q Consensus 198 ~Le~L~L~~c~ 208 (461)
.|++|++++|.
T Consensus 150 ~L~~L~L~~N~ 160 (313)
T 1ogq_A 150 NLVGITFDGNR 160 (313)
T ss_dssp TCCEEECCSSC
T ss_pred CCCeEECcCCc
Confidence 55555555543
No 8
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.18 E-value=1.6e-12 Score=122.34 Aligned_cols=247 Identities=16% Similarity=0.134 Sum_probs=150.8
Q ss_pred eeeCCCCcccCCCccEEEeceeccccccccC-C--CccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecC
Q 012562 134 VTELPHCLVTCESLEALKLACRQLRMCVLKL-P--FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFR 210 (461)
Q Consensus 134 ~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~--~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~ 210 (461)
...+|..+. ++|++|+|+++ .+.. | .+..+++|++|+|.++.++........+.+++.|+.|++++|.+.
T Consensus 19 l~~ip~~~~--~~l~~L~L~~n-----~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~ 91 (306)
T 2z66_A 19 LTSVPTGIP--SSATRLELESN-----KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 91 (306)
T ss_dssp CSSCCSCCC--TTCCEEECCSS-----CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE
T ss_pred cccCCCCCC--CCCCEEECCCC-----ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc
Confidence 345565443 58999999999 5555 3 356899999999998877643112233457899999999998644
Q ss_pred CceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCc---eeeeCCCCceEEEEEEEeecCCCCchhh
Q 012562 211 DFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPD---FAFEDLDSLQNAFIFFDIIDRDERDNES 287 (461)
Q Consensus 211 ~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~ 287 (461)
.+.......++|++|.+..+.+.+.........+++|++|.++++.... ..+..+++|+.+++..+...
T Consensus 92 ~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------- 163 (306)
T 2z66_A 92 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ-------- 163 (306)
T ss_dssp EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG--------
T ss_pred cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc--------
Confidence 3322222348899999987764211110111256899999998854322 23556788999888332210
Q ss_pred HHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEeccC
Q 012562 288 CHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEGE 367 (461)
Q Consensus 288 ~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~~~ 367 (461)
.......+..+++|+.|++++|.+..+. +..+. .+++|++|+++.+...... .. .+..+++|+.|++..+.-
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~-~l~~L~~L~L~~N~l~~~~-~~--~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLS----PTAFN-SLSSLQVLNMSHNNFFSLD-TF--PYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEEC----TTTTT-TCTTCCEEECTTSCCSBCC-SG--GGTTCTTCCEEECTTSCC
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcC----HHHhc-CCCCCCEEECCCCccCccC-hh--hccCcccCCEeECCCCCC
Confidence 0001223456889999999998765322 23344 6679999999776542211 11 356789999999987653
Q ss_pred CCccccccCcCccccccceeEEEEE--eecCChhHHHHHHHH
Q 012562 368 DCDDWKISNKSIFCLTCHLKTVELI--HVAGDENELELVRFL 407 (461)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~Lk~v~i~--~~~g~~~e~~~~~~l 407 (461)
.. .. ... .....++|+.+.+. .+.+......|.+++
T Consensus 236 ~~--~~-~~~-~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l 273 (306)
T 2z66_A 236 MT--SK-KQE-LQHFPSSLAFLNLTQNDFACTCEHQSFLQWI 273 (306)
T ss_dssp CB--CS-SSS-CCCCCTTCCEEECTTCCEECSGGGHHHHHHH
T ss_pred cc--cC-HHH-HHhhhccCCEEEccCCCeecccChHHHHHHH
Confidence 10 00 000 11122478888877 555666556666664
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.18 E-value=2.6e-12 Score=128.80 Aligned_cols=220 Identities=15% Similarity=0.081 Sum_probs=100.1
Q ss_pred cCCeEEEEEEcceeeeCCCCc-ccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcC
Q 012562 121 RNVQVFDLTVYGEVTELPHCL-VTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSR 196 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~~l-~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~c 196 (461)
+++++|+|+.+. ...+|... ..+++|++|+|++| .+.. ..+..+++|++|+|.++.+... ....+.++
T Consensus 80 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-----~i~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l 151 (477)
T 2id5_A 80 FNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISEN-----KIVILLDYMFQDLYNLKSLEVGDNDLVYI--SHRAFSGL 151 (477)
T ss_dssp TTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTS-----CCCEECTTTTTTCTTCCEEEECCTTCCEE--CTTSSTTC
T ss_pred ccCCEEECCCCc-CCccCcccccCCCCCCEEECCCC-----ccccCChhHccccccCCEEECCCCcccee--ChhhccCC
Confidence 356666664432 23444443 34667777777666 3322 2345566666666666544331 11234556
Q ss_pred ccccceEEeeeecCCceEEEE-ecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCcee---eeCCCCceEEE
Q 012562 197 RLLEKLILKSCSFRDFKILDI-SSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFA---FEDLDSLQNAF 272 (461)
Q Consensus 197 p~Le~L~L~~c~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~l~ 272 (461)
+.|+.|+|.+|.+.+.....+ ..++|+.|.+..+.+...... ..-.+++|++|.++++...... .....+|+.++
T Consensus 152 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 230 (477)
T 2id5_A 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY-SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS 230 (477)
T ss_dssp TTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTT-CSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEE
T ss_pred CCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChh-hcccCcccceeeCCCCccccccCcccccCccccEEE
Confidence 666666666665433211111 125566666665553110000 0113456666666653222111 11123555555
Q ss_pred EEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhc
Q 012562 273 IFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLN 352 (461)
Q Consensus 273 l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~ 352 (461)
+.-+.. ...+ ...+..+++|+.|++++|.+..+. ...+. .+++|+.|++..+...... +. .+.
T Consensus 231 l~~n~l--~~~~-------~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~-~l~~L~~L~L~~n~l~~~~-~~--~~~ 293 (477)
T 2id5_A 231 ITHCNL--TAVP-------YLAVRHLVYLRFLNLSYNPISTIE----GSMLH-ELLRLQEIQLVGGQLAVVE-PY--AFR 293 (477)
T ss_dssp EESSCC--CSCC-------HHHHTTCTTCCEEECCSSCCCEEC----TTSCT-TCTTCCEEECCSSCCSEEC-TT--TBT
T ss_pred CcCCcc--cccC-------HHHhcCccccCeeECCCCcCCccC----hhhcc-ccccCCEEECCCCccceEC-HH--Hhc
Confidence 532211 0111 123445566666666665543221 11222 3445666665444322111 11 234
Q ss_pred cCCCcceEEEEecc
Q 012562 353 CSPNLEALTIYFEG 366 (461)
Q Consensus 353 ~~p~L~~L~l~~~~ 366 (461)
.+++|+.|++..+.
T Consensus 294 ~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 294 GLNYLRVLNVSGNQ 307 (477)
T ss_dssp TCTTCCEEECCSSC
T ss_pred CcccCCEEECCCCc
Confidence 55566666555543
No 10
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.18 E-value=5.2e-13 Score=133.01 Aligned_cols=220 Identities=15% Similarity=0.068 Sum_probs=118.7
Q ss_pred cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCc
Q 012562 121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR 197 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp 197 (461)
.++++|+|+.+....-.|..+..+++|++|+|++| .+.. ..+..+++|++|+|.++.++.- ....+.+++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-----~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~ 147 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-----SIRQIEVGAFNGLASLNTLELFDNWLTVI--PSGAFEYLS 147 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-----CCCEECTTTTTTCTTCCEEECCSSCCSBC--CTTTSSSCT
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-----ccCCcChhhccCcccCCEEECCCCcCCcc--ChhhhcccC
Confidence 46777777655434444555666788888888877 4433 2456677888888887766542 233456678
Q ss_pred cccceEEeeeecCCceEEEE-ecCCcCeEEEeccCCCCCCCeE--EEEecCCeeeEEEecCCCCce-eeeCCCCceEEEE
Q 012562 198 LLEKLILKSCSFRDFKILDI-SSTSLKSLTLDNFGGDESGNYK--VKIACPNLVSFNFLASWAPDF-AFEDLDSLQNAFI 273 (461)
Q Consensus 198 ~Le~L~L~~c~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~--~~~~~p~L~~L~l~~~~~~~~-~~~~~~~L~~l~l 273 (461)
+|+.|+|++|.+..+....+ ..++|+.|.+.++.. .+.+. ..-.+++|++|.++++..... .+..+++|+.+++
T Consensus 148 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~--l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L 225 (452)
T 3zyi_A 148 KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKK--LEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEM 225 (452)
T ss_dssp TCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTT--CCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEEC
T ss_pred CCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCC--ccccChhhccCCCCCCEEECCCCcccccccccccccccEEEC
Confidence 88888887765332111001 126677777776432 11111 001356777777776544332 2445566666666
Q ss_pred EEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhcc
Q 012562 274 FFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNC 353 (461)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~ 353 (461)
+.+.. ... ....+.++++|+.|.+.+|.+..+. +..+. .+++|++|+++.+....-. .. .+..
T Consensus 226 s~N~l--~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~-~l~~L~~L~L~~N~l~~~~-~~--~~~~ 288 (452)
T 3zyi_A 226 SGNHF--PEI-------RPGSFHGLSSLKKLWVMNSQVSLIE----RNAFD-GLASLVELNLAHNNLSSLP-HD--LFTP 288 (452)
T ss_dssp TTSCC--SEE-------CGGGGTTCTTCCEEECTTSCCCEEC----TTTTT-TCTTCCEEECCSSCCSCCC-TT--SSTT
T ss_pred cCCcC--ccc-------CcccccCccCCCEEEeCCCcCceEC----HHHhc-CCCCCCEEECCCCcCCccC-hH--Hhcc
Confidence 32211 000 1123445667777777766554222 12233 4556777777655432111 11 3455
Q ss_pred CCCcceEEEEecc
Q 012562 354 SPNLEALTIYFEG 366 (461)
Q Consensus 354 ~p~L~~L~l~~~~ 366 (461)
+++|+.|++..++
T Consensus 289 l~~L~~L~L~~Np 301 (452)
T 3zyi_A 289 LRYLVELHLHHNP 301 (452)
T ss_dssp CTTCCEEECCSSC
T ss_pred ccCCCEEEccCCC
Confidence 6677777766654
No 11
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.17 E-value=5.8e-12 Score=129.79 Aligned_cols=105 Identities=20% Similarity=0.221 Sum_probs=64.7
Q ss_pred cccEEEEEEeccCCchhHHHHHHHHHhcCCeEEEEEEcceee--eCCCCcccCCCccEEEeceeccccccccCC------
Q 012562 94 SIQRFRLYCLSYANDYTVYRWVCAVARRNVQVFDLTVYGEVT--ELPHCLVTCESLEALKLACRQLRMCVLKLP------ 165 (461)
Q Consensus 94 ~i~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~--~lp~~l~~~~~L~~L~L~~~~~~~~~l~~~------ 165 (461)
.++.+.++.... .+..+..... ..+++++|++....... .++..+..|++|++|+|++| .+.+.
T Consensus 106 ~L~~L~L~~~~~-~~~~~~~l~~--~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~-----~i~~~~~~~l~ 177 (594)
T 2p1m_B 106 WLEEIRLKRMVV-TDDCLELIAK--SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRES-----DVDDVSGHWLS 177 (594)
T ss_dssp TCCEEEEESCBC-CHHHHHHHHH--HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTC-----EEECCCGGGGG
T ss_pred CCCeEEeeCcEE-cHHHHHHHHH--hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCC-----ccCCcchHHHH
Confidence 577777776542 2222221111 23578888885432111 13443446888999999888 44331
Q ss_pred -CccccCcccEEEeeeEE--EcChhhHHHHhhcCccccceEEeee
Q 012562 166 -FSVGFSRLKSLDLHNVE--FLDHNLLHKFVSSRRLLEKLILKSC 207 (461)
Q Consensus 166 -~~~~l~~L~~L~L~~~~--~~~~~~l~~l~~~cp~Le~L~L~~c 207 (461)
....+++|++|+|.++. +++. .+..++.+||+|+.|+|.+|
T Consensus 178 ~~~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 178 HFPDTYTSLVSLNISCLASEVSFS-ALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp GSCTTCCCCCEEECTTCCSCCCHH-HHHHHHHHCTTCCEEECCTT
T ss_pred HHhhcCCcCcEEEecccCCcCCHH-HHHHHHHhCCCCcEEecCCC
Confidence 12256788888888775 4444 77777788888888888877
No 12
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.14 E-value=6e-13 Score=132.06 Aligned_cols=221 Identities=14% Similarity=0.093 Sum_probs=122.7
Q ss_pred cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCc
Q 012562 121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR 197 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp 197 (461)
.+++.|+|..+....-.+..+..+++|++|+|++| .+.. ..+..+++|++|+|.++.++.- ....+.+++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-----~i~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~ 136 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-----HIRTIEIGAFNGLANLNTLELFDNRLTTI--PNGAFVYLS 136 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-----CCCEECGGGGTTCSSCCEEECCSSCCSSC--CTTTSCSCS
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-----cCCccChhhccCCccCCEEECCCCcCCee--CHhHhhccc
Confidence 45777777555433333445556778888888877 4433 2455677888888887766542 223456777
Q ss_pred cccceEEeeeecCCceEEEE-ecCCcCeEEEeccCCCCCCCeE--EEEecCCeeeEEEecCCCCce-eeeCCCCceEEEE
Q 012562 198 LLEKLILKSCSFRDFKILDI-SSTSLKSLTLDNFGGDESGNYK--VKIACPNLVSFNFLASWAPDF-AFEDLDSLQNAFI 273 (461)
Q Consensus 198 ~Le~L~L~~c~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~--~~~~~p~L~~L~l~~~~~~~~-~~~~~~~L~~l~l 273 (461)
+|+.|+|++|.+..+....+ ..++|+.|.+.++.. .+.+. ..-.+++|++|.++++....+ .+..+++|+.+++
T Consensus 137 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~--l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L 214 (440)
T 3zyj_A 137 KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKR--LSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDL 214 (440)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTT--CCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEEC
T ss_pred cCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCC--cceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEEC
Confidence 88888887765332111001 126777777776432 11111 011356777777777544332 2445667777777
Q ss_pred EEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhcc
Q 012562 274 FFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNC 353 (461)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~ 353 (461)
..+.. ... ....+.++++|+.|.+.+|.+..+. ...+. .+++|++|+++.+....-. .. .+..
T Consensus 215 s~N~l--~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~-~l~~L~~L~L~~N~l~~~~-~~--~~~~ 277 (440)
T 3zyj_A 215 SGNHL--SAI-------RPGSFQGLMHLQKLWMIQSQIQVIE----RNAFD-NLQSLVEINLAHNNLTLLP-HD--LFTP 277 (440)
T ss_dssp TTSCC--CEE-------CTTTTTTCTTCCEEECTTCCCCEEC----TTSST-TCTTCCEEECTTSCCCCCC-TT--TTSS
T ss_pred CCCcc--Ccc-------ChhhhccCccCCEEECCCCceeEEC----hhhhc-CCCCCCEEECCCCCCCccC-hh--Hhcc
Confidence 32211 000 1123446777788887777655322 22233 4567777777665432211 11 4566
Q ss_pred CCCcceEEEEeccC
Q 012562 354 SPNLEALTIYFEGE 367 (461)
Q Consensus 354 ~p~L~~L~l~~~~~ 367 (461)
+++|+.|++..++-
T Consensus 278 l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 278 LHHLERIHLHHNPW 291 (440)
T ss_dssp CTTCCEEECCSSCE
T ss_pred ccCCCEEEcCCCCc
Confidence 77788887777654
No 13
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.14 E-value=4.8e-12 Score=134.37 Aligned_cols=219 Identities=16% Similarity=0.107 Sum_probs=113.0
Q ss_pred cCCeEEEEEEcceeeeCCC--CcccCCCccEEEeceeccccccccC--C--CccccCcccEEEeeeEEEcChhhHH--HH
Q 012562 121 RNVQVFDLTVYGEVTELPH--CLVTCESLEALKLACRQLRMCVLKL--P--FSVGFSRLKSLDLHNVEFLDHNLLH--KF 192 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~--~l~~~~~L~~L~L~~~~~~~~~l~~--~--~~~~l~~L~~L~L~~~~~~~~~~l~--~l 192 (461)
+++++|+|+.+.....+|. .+..+++|++|+|++| .+.. | ....+++|++|+|.++.+++. ... ..
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n-----~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~ 173 (768)
T 3rgz_A 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSN-----TLDFPGKVSGGLKLNSLEVLDLSANSISGA-NVVGWVL 173 (768)
T ss_dssp TTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSS-----EEECCSSCCSCCCCTTCSEEECCSSCCEEE-THHHHHH
T ss_pred CCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCC-----ccCCcCCHHHhccCCCCCEEECCCCccCCc-CChhhhh
Confidence 3566666655544445555 5666777777777766 4432 2 124567777777776666543 211 12
Q ss_pred hhcCccccceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCc---eeeeCCCCce
Q 012562 193 VSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPD---FAFEDLDSLQ 269 (461)
Q Consensus 193 ~~~cp~Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~---~~~~~~~~L~ 269 (461)
+.+|+.|+.|++++|.+.+.... ...++|++|.+..|.+ .+.....-.+++|++|+++++.... ..+..+++|+
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~~-~~l~~L~~L~Ls~n~l--~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 250 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVDV-SRCVNLEFLDVSSNNF--STGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELK 250 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCBC-TTCTTCCEEECCSSCC--CSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCC
T ss_pred hccCCCCCEEECCCCcccccCCc-ccCCcCCEEECcCCcC--CCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCC
Confidence 56677777777777654332211 1236677777776664 1212221245677777776654432 1245566666
Q ss_pred EEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhh
Q 012562 270 NAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIIS 349 (461)
Q Consensus 270 ~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~ 349 (461)
.+++..+... +..+. ..+++|+.|++.+|.+.. ..+..+...+++|++|++..+...... +.
T Consensus 251 ~L~Ls~n~l~-~~~~~----------~~l~~L~~L~L~~n~l~~----~ip~~~~~~~~~L~~L~Ls~n~l~~~~-p~-- 312 (768)
T 3rgz_A 251 LLNISSNQFV-GPIPP----------LPLKSLQYLSLAENKFTG----EIPDFLSGACDTLTGLDLSGNHFYGAV-PP-- 312 (768)
T ss_dssp EEECCSSCCE-ESCCC----------CCCTTCCEEECCSSEEEE----SCCCCSCTTCTTCSEEECCSSEEEECC-CG--
T ss_pred EEECCCCccc-CccCc----------cccCCCCEEECcCCccCC----ccCHHHHhhcCcCCEEECcCCcCCCcc-ch--
Confidence 6666322110 00010 045666667666665431 111222212357777777554332111 11
Q ss_pred hhccCCCcceEEEEecc
Q 012562 350 LLNCSPNLEALTIYFEG 366 (461)
Q Consensus 350 lL~~~p~L~~L~l~~~~ 366 (461)
.+..+++|+.|++..+.
T Consensus 313 ~~~~l~~L~~L~L~~n~ 329 (768)
T 3rgz_A 313 FFGSCSLLESLALSSNN 329 (768)
T ss_dssp GGGGCTTCCEEECCSSE
T ss_pred HHhcCCCccEEECCCCc
Confidence 34667777777776653
No 14
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.14 E-value=4e-13 Score=133.85 Aligned_cols=127 Identities=17% Similarity=0.134 Sum_probs=84.1
Q ss_pred cccEEEEEEeccCCc--hhHHHHHHHHHhcCCeEEEEEEcceeeeCCC-CcccCCCccEEEeceeccccccccC---CCc
Q 012562 94 SIQRFRLYCLSYAND--YTVYRWVCAVARRNVQVFDLTVYGEVTELPH-CLVTCESLEALKLACRQLRMCVLKL---PFS 167 (461)
Q Consensus 94 ~i~~l~l~~~~~~~~--~~~~~wi~~~~~~~l~~L~l~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~~~~l~~---~~~ 167 (461)
.++.+.++....... ..+. ..+++++|++........++. .+..+++|++|+|++| .+.. ..+
T Consensus 31 ~l~~L~Ls~n~i~~~~~~~~~------~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-----~l~~~~~~~~ 99 (455)
T 3v47_A 31 HVNYVDLSLNSIAELNETSFS------RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-----QFLQLETGAF 99 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTS------SCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-----TTCEECTTTT
T ss_pred ccCEEEecCCccCcCChhHhc------cCccccEEECcCCcccceECcccccccccCCEEeCCCC-----ccCccChhhc
Confidence 577777765442211 1111 124788888866543334544 4556899999999998 4433 356
Q ss_pred cccCcccEEEeeeEEEcChhhHH-HHhhcCccccceEEeeeecCCceEEE-E-ecCCcCeEEEeccCC
Q 012562 168 VGFSRLKSLDLHNVEFLDHNLLH-KFVSSRRLLEKLILKSCSFRDFKILD-I-SSTSLKSLTLDNFGG 232 (461)
Q Consensus 168 ~~l~~L~~L~L~~~~~~~~~~l~-~l~~~cp~Le~L~L~~c~~~~~~~~~-i-~~~~L~~L~l~~~~~ 232 (461)
..+++|++|+|.++.+++. ... ..+.++++|++|+|++|.+.+..... + ..++|++|.+..+.+
T Consensus 100 ~~l~~L~~L~L~~n~l~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 100 NGLANLEVLTLTQCNLDGA-VLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TTCTTCCEEECTTSCCBTH-HHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred cCcccCCEEeCCCCCCCcc-ccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 7789999999999888763 222 23678899999999998765543322 2 247899999988764
No 15
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.14 E-value=2.4e-11 Score=121.36 Aligned_cols=247 Identities=16% Similarity=0.122 Sum_probs=127.9
Q ss_pred cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccc
Q 012562 121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLL 199 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~L 199 (461)
+++++|++.... ...++. +..+++|++|+|++| .+.. +.+..+++|++|+|.++.+.+- . .+.+++.|
T Consensus 90 ~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n-----~l~~~~~~~~l~~L~~L~l~~n~l~~~---~-~~~~l~~L 158 (466)
T 1o6v_A 90 TKLVDILMNNNQ-IADITP-LANLTNLTGLTLFNN-----QITDIDPLKNLTNLNRLELSSNTISDI---S-ALSGLTSL 158 (466)
T ss_dssp TTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-----CCCCCGGGTTCTTCSEEEEEEEEECCC---G-GGTTCTTC
T ss_pred ccCCEEECCCCc-cccChh-hcCCCCCCEEECCCC-----CCCCChHHcCCCCCCEEECCCCccCCC---h-hhccCCcc
Confidence 345555553332 112222 444556666666665 4333 2345556666666666655543 1 14556666
Q ss_pred cceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCce-eeeCCCCceEEEEEEEee
Q 012562 200 EKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDF-AFEDLDSLQNAFIFFDII 278 (461)
Q Consensus 200 e~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~L~~l~l~~~~~ 278 (461)
+.|.+..+ ..+... -...++|+.|.+..+.+.+ +.....+++|++|.++++..... .+..+++|+.+++..+..
T Consensus 159 ~~L~l~~~-~~~~~~-~~~l~~L~~L~l~~n~l~~---~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l 233 (466)
T 1o6v_A 159 QQLSFGNQ-VTDLKP-LANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQL 233 (466)
T ss_dssp SEEEEEES-CCCCGG-GTTCTTCCEEECCSSCCCC---CGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred cEeecCCc-ccCchh-hccCCCCCEEECcCCcCCC---ChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCc
Confidence 66666432 111111 0012566777776665321 11112456777777776443322 245566777777732211
Q ss_pred cCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcc
Q 012562 279 DRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLE 358 (461)
Q Consensus 279 ~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~ 358 (461)
. . + ..+..+++|+.|+++++.+..... +. .+++|++|++..+...... -+..+++|+
T Consensus 234 ~--~--------~-~~l~~l~~L~~L~l~~n~l~~~~~------~~-~l~~L~~L~l~~n~l~~~~-----~~~~l~~L~ 290 (466)
T 1o6v_A 234 K--D--------I-GTLASLTNLTDLDLANNQISNLAP------LS-GLTKLTELKLGANQISNIS-----PLAGLTALT 290 (466)
T ss_dssp C--C--------C-GGGGGCTTCSEEECCSSCCCCCGG------GT-TCTTCSEEECCSSCCCCCG-----GGTTCTTCS
T ss_pred c--c--------c-hhhhcCCCCCEEECCCCccccchh------hh-cCCCCCEEECCCCccCccc-----cccCCCccC
Confidence 0 0 0 124466777777777776542211 23 5567788877665432211 145678888
Q ss_pred eEEEEeccCCCccccccCcCccccccceeEEEEEe--ecCChhHHHHHHHHHhcCcCcceEEEEc
Q 012562 359 ALTIYFEGEDCDDWKISNKSIFCLTCHLKTVELIH--VAGDENELELVRFLLKNGHVLKKLSFSW 421 (461)
Q Consensus 359 ~L~l~~~~~~~~~~~~~~~~~~~~~~~Lk~v~i~~--~~g~~~e~~~~~~ll~~a~~Le~~~i~~ 421 (461)
.|++..+.-. ..++...+++|+.+.+.+ +.+... +.+.+.|+.+.+..
T Consensus 291 ~L~L~~n~l~-------~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~~l~~L~~L~l~~ 340 (466)
T 1o6v_A 291 NLELNENQLE-------DISPISNLKNLTYLTLYFNNISDISP--------VSSLTKLQRLFFYN 340 (466)
T ss_dssp EEECCSSCCS-------CCGGGGGCTTCSEEECCSSCCSCCGG--------GGGCTTCCEEECCS
T ss_pred eEEcCCCccc-------CchhhcCCCCCCEEECcCCcCCCchh--------hccCccCCEeECCC
Confidence 8877765421 111223456788887773 333221 46889999988873
No 16
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.13 E-value=1.2e-12 Score=124.88 Aligned_cols=212 Identities=17% Similarity=0.100 Sum_probs=119.5
Q ss_pred HHHHHHHHhc-CCeEEEEEEcceeeeCCCCcccC--CCccEEEeceeccccccccC--CCccccCcccEEEeeeEEEcCh
Q 012562 112 YRWVCAVARR-NVQVFDLTVYGEVTELPHCLVTC--ESLEALKLACRQLRMCVLKL--PFSVGFSRLKSLDLHNVEFLDH 186 (461)
Q Consensus 112 ~~wi~~~~~~-~l~~L~l~~~~~~~~lp~~l~~~--~~L~~L~L~~~~~~~~~l~~--~~~~~l~~L~~L~L~~~~~~~~ 186 (461)
.+|-..+..+ ..+.+++...... |..+... ++++.|+++++ .+.. +....+++|++|+|.++.+++.
T Consensus 37 ~~W~~~~~~~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n-----~l~~~~~~~~~~~~L~~L~L~~~~l~~~ 108 (336)
T 2ast_B 37 KRWYRLASDESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRS-----FMDQPLAEHFSPFRVQHMDLSNSVIEVS 108 (336)
T ss_dssp HHHHHHHTCSTTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTC-----EECSCCCSCCCCBCCCEEECTTCEECHH
T ss_pred HHHHHHhcCchhheeeccccccCC---HHHHHhhhhccceEEEcCCc-----cccccchhhccCCCCCEEEccCCCcCHH
Confidence 3566655433 3777877432211 2223344 79999999999 6555 4566799999999999998765
Q ss_pred hhHHHHhhcCccccceEEeeeecCCceEEEEe-cCCcCeEEEeccCCCCCCCeE-EEEecCCeeeEEEecC-CCCceeee
Q 012562 187 NLLHKFVSSRRLLEKLILKSCSFRDFKILDIS-STSLKSLTLDNFGGDESGNYK-VKIACPNLVSFNFLAS-WAPDFAFE 263 (461)
Q Consensus 187 ~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~-~~~~~p~L~~L~l~~~-~~~~~~~~ 263 (461)
.+..++.+||+|++|+|++|.+.+.....+. .++|++|.+.+|.......+. ..-.+|+|++|.++++ ...
T Consensus 109 -~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~----- 182 (336)
T 2ast_B 109 -TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT----- 182 (336)
T ss_dssp -HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC-----
T ss_pred -HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcC-----
Confidence 6888899999999999999864321111111 366777777766210000111 1124566666666654 222
Q ss_pred CCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCC-CccEEEEecchhhhhccccccccCCcccCcccEEEEEEeC-CC
Q 012562 264 DLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELC-EVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSM-AD 341 (461)
Q Consensus 264 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~-~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-~~ 341 (461)
...+...+..++ +|+.|+++++.... .....+..+. .+++|++|++..+. .+
T Consensus 183 ------------------------~~~~~~~~~~l~~~L~~L~l~~~~~~~-~~~~l~~~~~-~~~~L~~L~l~~~~~l~ 236 (336)
T 2ast_B 183 ------------------------EKHVQVAVAHVSETITQLNLSGYRKNL-QKSDLSTLVR-RCPNLVHLDLSDSVMLK 236 (336)
T ss_dssp ------------------------HHHHHHHHHHSCTTCCEEECCSCGGGS-CHHHHHHHHH-HCTTCSEEECTTCTTCC
T ss_pred ------------------------hHHHHHHHHhcccCCCEEEeCCCcccC-CHHHHHHHHh-hCCCCCEEeCCCCCcCC
Confidence 222445555666 66666666653210 0000011111 34466666665554 23
Q ss_pred cchhhHhhhhccCCCcceEEEEecc
Q 012562 342 WVVPSIISLLNCSPNLEALTIYFEG 366 (461)
Q Consensus 342 ~~~l~~~~lL~~~p~L~~L~l~~~~ 366 (461)
...+. .+..+|+|+.|++..+.
T Consensus 237 ~~~~~---~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 237 NDCFQ---EFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp GGGGG---GGGGCTTCCEEECTTCT
T ss_pred HHHHH---HHhCCCCCCEeeCCCCC
Confidence 33333 23455666666666553
No 17
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.13 E-value=7.6e-12 Score=125.44 Aligned_cols=219 Identities=17% Similarity=0.088 Sum_probs=145.7
Q ss_pred cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-C--CccccCcccEEEeeeEEEcChhhHHHHhhcCc
Q 012562 121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-P--FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR 197 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~--~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp 197 (461)
+++++|+|+.+......|..+..+++|++|+|+++ .+.. + .+..+++|++|+|.++.+... ....+.+++
T Consensus 56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-----~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~--~~~~~~~l~ 128 (477)
T 2id5_A 56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-----RLKLIPLGVFTGLSNLTKLDISENKIVIL--LDYMFQDLY 128 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-----CCCSCCTTSSTTCTTCCEEECTTSCCCEE--CTTTTTTCT
T ss_pred CCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-----cCCccCcccccCCCCCCEEECCCCccccC--ChhHccccc
Confidence 57888888655444445666777999999999998 5554 2 356789999999998877642 334467899
Q ss_pred cccceEEeeeecCCceEEEE-ecCCcCeEEEeccCCCCCCCeE--EEEecCCeeeEEEecCCCCce---eeeCCCCceEE
Q 012562 198 LLEKLILKSCSFRDFKILDI-SSTSLKSLTLDNFGGDESGNYK--VKIACPNLVSFNFLASWAPDF---AFEDLDSLQNA 271 (461)
Q Consensus 198 ~Le~L~L~~c~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~--~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~l 271 (461)
+|+.|++.+|.+.+...-.+ ..++|+.|.+..|.+ ..+. ..-.+++|+.|.+.++..... .+..+++|+.+
T Consensus 129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 205 (477)
T 2id5_A 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL---TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL 205 (477)
T ss_dssp TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC---SSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEE
T ss_pred cCCEEECCCCccceeChhhccCCCCCCEEECCCCcC---cccChhHhcccCCCcEEeCCCCcCcEeChhhcccCccccee
Confidence 99999999875432211111 137899999998874 2221 112578999999998654433 46678899999
Q ss_pred EEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhh
Q 012562 272 FIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLL 351 (461)
Q Consensus 272 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL 351 (461)
++.-+.. ....+ .......+|+.|+++++.+..+.. ..+. .+++|+.|+++.+...... .. .+
T Consensus 206 ~l~~~~~-~~~~~--------~~~~~~~~L~~L~l~~n~l~~~~~----~~~~-~l~~L~~L~Ls~n~l~~~~-~~--~~ 268 (477)
T 2id5_A 206 EISHWPY-LDTMT--------PNCLYGLNLTSLSITHCNLTAVPY----LAVR-HLVYLRFLNLSYNPISTIE-GS--ML 268 (477)
T ss_dssp EEECCTT-CCEEC--------TTTTTTCCCSEEEEESSCCCSCCH----HHHT-TCTTCCEEECCSSCCCEEC-TT--SC
T ss_pred eCCCCcc-ccccC--------cccccCccccEEECcCCcccccCH----HHhc-CccccCeeECCCCcCCccC-hh--hc
Confidence 9954311 00011 111123489999999997653321 1223 5679999999877543222 22 46
Q ss_pred ccCCCcceEEEEecc
Q 012562 352 NCSPNLEALTIYFEG 366 (461)
Q Consensus 352 ~~~p~L~~L~l~~~~ 366 (461)
..+++|+.|++..+.
T Consensus 269 ~~l~~L~~L~L~~n~ 283 (477)
T 2id5_A 269 HELLRLQEIQLVGGQ 283 (477)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred cccccCCEEECCCCc
Confidence 789999999998765
No 18
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.13 E-value=5.1e-12 Score=121.14 Aligned_cols=270 Identities=17% Similarity=0.132 Sum_probs=167.0
Q ss_pred CcccEEEEEEeccCCchhHHHHHHHHHhcCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccC
Q 012562 93 VSIQRFRLYCLSYANDYTVYRWVCAVARRNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFS 171 (461)
Q Consensus 93 ~~i~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~ 171 (461)
+.++.+.++......... ....+++++|+++... ...+| .+..+++|++|+|++| .+.. +....++
T Consensus 66 ~~L~~L~l~~n~i~~~~~------~~~l~~L~~L~L~~n~-i~~~~-~~~~l~~L~~L~l~~n-----~i~~~~~~~~l~ 132 (347)
T 4fmz_A 66 TNLEYLNLNGNQITDISP------LSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLRELYLNED-----NISDISPLANLT 132 (347)
T ss_dssp TTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEEECTTS-----CCCCCGGGTTCT
T ss_pred CCccEEEccCCccccchh------hhcCCcCCEEEccCCc-ccCch-HHcCCCcCCEEECcCC-----cccCchhhccCC
Confidence 358888887654322111 1223578999986543 22333 4667899999999999 6555 4467889
Q ss_pred cccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEE
Q 012562 172 RLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFN 251 (461)
Q Consensus 172 ~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~ 251 (461)
+|++|++.++..... +.. +..++.|+.|++.+|...+... ....++|+.|.+..|.+.+... ....++|++|.
T Consensus 133 ~L~~L~l~~n~~~~~--~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~ 205 (347)
T 4fmz_A 133 KMYSLNLGANHNLSD--LSP-LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP---LASLTSLHYFT 205 (347)
T ss_dssp TCCEEECTTCTTCCC--CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG---GGGCTTCCEEE
T ss_pred ceeEEECCCCCCccc--ccc-hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccc---ccCCCccceee
Confidence 999999988744332 222 6788999999998887554333 1123788889888887522211 12567888888
Q ss_pred EecCCCCcee-eeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcc
Q 012562 252 FLASWAPDFA-FEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYL 330 (461)
Q Consensus 252 l~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L 330 (461)
+.++...... +..+++|+.+++.-+.. .. +.. +..+++++.|+++++.+..+ ..+. .+++|
T Consensus 206 l~~n~l~~~~~~~~~~~L~~L~l~~n~l--~~--------~~~-~~~l~~L~~L~l~~n~l~~~------~~~~-~l~~L 267 (347)
T 4fmz_A 206 AYVNQITDITPVANMTRLNSLKIGNNKI--TD--------LSP-LANLSQLTWLEIGTNQISDI------NAVK-DLTKL 267 (347)
T ss_dssp CCSSCCCCCGGGGGCTTCCEEECCSSCC--CC--------CGG-GTTCTTCCEEECCSSCCCCC------GGGT-TCTTC
T ss_pred cccCCCCCCchhhcCCcCCEEEccCCcc--CC--------Ccc-hhcCCCCCEEECCCCccCCC------hhHh-cCCCc
Confidence 8875544332 56778888888843221 00 111 56788888888888865532 1233 56688
Q ss_pred cEEEEEEeCCCcchhhHhhhhccCCCcceEEEEeccCCCccccccCcCcc--ccccceeEEEEEe--ecCChhHHHHHHH
Q 012562 331 KSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEGEDCDDWKISNKSIF--CLTCHLKTVELIH--VAGDENELELVRF 406 (461)
Q Consensus 331 ~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~--~~~~~Lk~v~i~~--~~g~~~e~~~~~~ 406 (461)
++|+++.+....- + .+..+|+|+.|++..+.... .. +. ..+++|+.+.+.+ +.+...
T Consensus 268 ~~L~l~~n~l~~~--~---~~~~l~~L~~L~L~~n~l~~------~~-~~~l~~l~~L~~L~L~~n~l~~~~~------- 328 (347)
T 4fmz_A 268 KMLNVGSNQISDI--S---VLNNLSQLNSLFLNNNQLGN------ED-MEVIGGLTNLTTLFLSQNHITDIRP------- 328 (347)
T ss_dssp CEEECCSSCCCCC--G---GGGGCTTCSEEECCSSCCCG------GG-HHHHHTCTTCSEEECCSSSCCCCGG-------
T ss_pred CEEEccCCccCCC--h---hhcCCCCCCEEECcCCcCCC------cC-hhHhhccccCCEEEccCCccccccC-------
Confidence 8888876644221 2 45678888888888765310 00 11 1346677777763 222211
Q ss_pred HHhcCcCcceEEEE
Q 012562 407 LLKNGHVLKKLSFS 420 (461)
Q Consensus 407 ll~~a~~Le~~~i~ 420 (461)
+.+.+.|+.+.+.
T Consensus 329 -~~~l~~L~~L~l~ 341 (347)
T 4fmz_A 329 -LASLSKMDSADFA 341 (347)
T ss_dssp -GGGCTTCSEESSS
T ss_pred -hhhhhccceeehh
Confidence 5677778877665
No 19
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.12 E-value=5.1e-13 Score=126.30 Aligned_cols=218 Identities=18% Similarity=0.145 Sum_probs=148.1
Q ss_pred cCCeEEEEEEcceee--eCCCCcccCCCccEEEece-eccccccccC--C-CccccCcccEEEeeeEEEcChhhHHHHhh
Q 012562 121 RNVQVFDLTVYGEVT--ELPHCLVTCESLEALKLAC-RQLRMCVLKL--P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVS 194 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~--~lp~~l~~~~~L~~L~L~~-~~~~~~~l~~--~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~ 194 (461)
.++++|++....... .+|..+..+++|++|+|++ + .+.. | .+..+++|++|+|.++.+++ .+...+.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n-----~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~ 122 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN-----NLVGPIPPAIAKLTQLHYLYITHTNVSG--AIPDFLS 122 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEET-----TEESCCCGGGGGCTTCSEEEEEEECCEE--ECCGGGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCC-----cccccCChhHhcCCCCCEEECcCCeeCC--cCCHHHh
Confidence 468889987665444 7899999999999999995 6 4443 3 56789999999999998874 3444578
Q ss_pred cCccccceEEeeeecCCceEEEEe-cCCcCeEEEeccCCCCCCCeEEEE-ecC-CeeeEEEecCCCC---ceeeeCCCCc
Q 012562 195 SRRLLEKLILKSCSFRDFKILDIS-STSLKSLTLDNFGGDESGNYKVKI-ACP-NLVSFNFLASWAP---DFAFEDLDSL 268 (461)
Q Consensus 195 ~cp~Le~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~~~~-~~p-~L~~L~l~~~~~~---~~~~~~~~~L 268 (461)
++++|++|++++|.+.+.....+. .++|++|.+..|.+ .+.+...+ ..+ +|++|.++++... ...+..++ |
T Consensus 123 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l--~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L 199 (313)
T 1ogq_A 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI--SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L 199 (313)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC--EEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C
T ss_pred CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcc--cCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c
Confidence 899999999999875432211122 37899999998874 11111111 344 8999999885432 22244454 8
Q ss_pred eEEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHh
Q 012562 269 QNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSII 348 (461)
Q Consensus 269 ~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~ 348 (461)
+.+++..+... ......+..+++|+.|++++|.+.... ..+. .+++|++|+++.+...... +.
T Consensus 200 ~~L~Ls~N~l~---------~~~~~~~~~l~~L~~L~L~~N~l~~~~-----~~~~-~l~~L~~L~Ls~N~l~~~~-p~- 262 (313)
T 1ogq_A 200 AFVDLSRNMLE---------GDASVLFGSDKNTQKIHLAKNSLAFDL-----GKVG-LSKNLNGLDLRNNRIYGTL-PQ- 262 (313)
T ss_dssp SEEECCSSEEE---------ECCGGGCCTTSCCSEEECCSSEECCBG-----GGCC-CCTTCCEEECCSSCCEECC-CG-
T ss_pred cEEECcCCccc---------CcCCHHHhcCCCCCEEECCCCceeeec-----Cccc-ccCCCCEEECcCCcccCcC-Ch-
Confidence 88888432220 012234557899999999998765211 1233 5679999999877653332 22
Q ss_pred hhhccCCCcceEEEEecc
Q 012562 349 SLLNCSPNLEALTIYFEG 366 (461)
Q Consensus 349 ~lL~~~p~L~~L~l~~~~ 366 (461)
.+..+++|+.|++..+.
T Consensus 263 -~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 263 -GLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp -GGGGCTTCCEEECCSSE
T ss_pred -HHhcCcCCCEEECcCCc
Confidence 46788999999998765
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.12 E-value=5.1e-12 Score=125.85 Aligned_cols=259 Identities=16% Similarity=0.102 Sum_probs=164.4
Q ss_pred cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-----CCccccCcccEEEeeeEEEcChhhHHHHhhc
Q 012562 121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-----PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSS 195 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-----~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~ 195 (461)
+++++|+++.+......|..+..+++|++|+|++| .+.. ..+..+++|++|+|.++.+++. ....++.+
T Consensus 79 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-----~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~ 152 (455)
T 3v47_A 79 SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQC-----NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI-QPASFFLN 152 (455)
T ss_dssp TTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTS-----CCBTHHHHSSTTTTCTTCCEEECCSSBCCSC-CCCGGGGG
T ss_pred ccCCEEeCCCCccCccChhhccCcccCCEEeCCCC-----CCCccccCcccccCcccCCEEECCCCccCcc-CcccccCC
Confidence 57899998666544455777778999999999999 5543 2366789999999999887764 23344778
Q ss_pred CccccceEEeeeecCCceE-------------EEE----------------------ecCCcCeEEEeccCCCC------
Q 012562 196 RRLLEKLILKSCSFRDFKI-------------LDI----------------------SSTSLKSLTLDNFGGDE------ 234 (461)
Q Consensus 196 cp~Le~L~L~~c~~~~~~~-------------~~i----------------------~~~~L~~L~l~~~~~~~------ 234 (461)
++.|++|++++|.+.+... +.+ ..++|++|++.+|.+.+
T Consensus 153 l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 232 (455)
T 3v47_A 153 MRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF 232 (455)
T ss_dssp CTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHH
T ss_pred CCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhh
Confidence 8999999998886433211 000 01457777777665311
Q ss_pred -----CCCeE-EEE--------------------------ecCCeeeEEEecCCCCce---eeeCCCCceEEEEEEEeec
Q 012562 235 -----SGNYK-VKI--------------------------ACPNLVSFNFLASWAPDF---AFEDLDSLQNAFIFFDIID 279 (461)
Q Consensus 235 -----~~~~~-~~~--------------------------~~p~L~~L~l~~~~~~~~---~~~~~~~L~~l~l~~~~~~ 279 (461)
...+. +.+ ..++|++|+++++..... .+..+++|+.+++..+..
T Consensus 233 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l- 311 (455)
T 3v47_A 233 FDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI- 311 (455)
T ss_dssp HHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC-
T ss_pred hccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcc-
Confidence 01111 111 125788888888654433 356788999999943221
Q ss_pred CCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcce
Q 012562 280 RDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEA 359 (461)
Q Consensus 280 ~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~ 359 (461)
... ....+..+++|+.|++++|.+..+. +..+. .+++|++|+++.+........ .+..+|+|+.
T Consensus 312 -~~~-------~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~-~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~ 375 (455)
T 3v47_A 312 -NKI-------DDNAFWGLTHLLKLNLSQNFLGSID----SRMFE-NLDKLEVLDLSYNHIRALGDQ---SFLGLPNLKE 375 (455)
T ss_dssp -CEE-------CTTTTTTCTTCCEEECCSSCCCEEC----GGGGT-TCTTCCEEECCSSCCCEECTT---TTTTCTTCCE
T ss_pred -ccc-------ChhHhcCcccCCEEECCCCccCCcC----hhHhc-CcccCCEEECCCCcccccChh---hccccccccE
Confidence 000 1123457899999999999765322 23334 567999999987755332222 4578999999
Q ss_pred EEEEeccCCCccccccCcCcc--ccccceeEEEEE--eecCChhHHHHHHHHHh
Q 012562 360 LTIYFEGEDCDDWKISNKSIF--CLTCHLKTVELI--HVAGDENELELVRFLLK 409 (461)
Q Consensus 360 L~l~~~~~~~~~~~~~~~~~~--~~~~~Lk~v~i~--~~~g~~~e~~~~~~ll~ 409 (461)
|++..+.-. ..++. ..+++|+.+.+. .+.+....+..+...++
T Consensus 376 L~L~~N~l~-------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~ 422 (455)
T 3v47_A 376 LALDTNQLK-------SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 422 (455)
T ss_dssp EECCSSCCS-------CCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHH
T ss_pred EECCCCccc-------cCCHhHhccCCcccEEEccCCCcccCCCcchHHHHHHH
Confidence 999886531 12111 235788888888 55666665665544444
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.12 E-value=3.1e-13 Score=139.74 Aligned_cols=210 Identities=17% Similarity=0.169 Sum_probs=90.8
Q ss_pred eCCCCcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCc
Q 012562 136 ELPHCLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDF 212 (461)
Q Consensus 136 ~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~ 212 (461)
.+|..+..+++|++|++++| .+.. ..+..+++|++|++.++.+... .....+.++++|++|++++|.+.+.
T Consensus 292 ~lp~~l~~l~~L~~L~l~~n-----~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~ 365 (606)
T 3t6q_A 292 ELPSGLVGLSTLKKLVLSAN-----KFENLCQISASNFPSLTHLSIKGNTKRLE-LGTGCLENLENLRELDLSHDDIETS 365 (606)
T ss_dssp CCCSSCCSCTTCCEEECTTC-----CCSBGGGGCGGGCTTCSEEECCSCSSCCB-CCSSTTTTCTTCCEEECCSSCCCEE
T ss_pred CCChhhcccccCCEEECccC-----CcCcCchhhhhccCcCCEEECCCCCcccc-cchhhhhccCcCCEEECCCCccccc
Confidence 44444444555555555555 2222 1334455555555555433321 1112234455555555555432221
Q ss_pred eE--EEE-ecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCc----eeeeCCCCceEEEEEEEeecCCCCch
Q 012562 213 KI--LDI-SSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPD----FAFEDLDSLQNAFIFFDIIDRDERDN 285 (461)
Q Consensus 213 ~~--~~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~ 285 (461)
.. ..+ ..++|+.|.+..|.+.+... ...-.+++|++|.++++.... ..+..+++|+.+++..+...
T Consensus 366 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~------ 438 (606)
T 3t6q_A 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKT-EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD------ 438 (606)
T ss_dssp EESTTTTTTCTTCCEEECCSCSCEEECT-TTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCB------
T ss_pred cCcchhcccCCCCCEEECCCCcCCcCCH-HHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccC------
Confidence 10 000 12455555555544200000 000134556666665532211 11345556666666322110
Q ss_pred hhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEec
Q 012562 286 ESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFE 365 (461)
Q Consensus 286 ~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~ 365 (461)
......+..+++|+.|++++|.+..... .....+. .+++|+.|+++.+...... +. .+..+++|+.|++..+
T Consensus 439 ---~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~-~l~~L~~L~Ls~n~l~~~~-~~--~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 439 ---ISSEQLFDGLPALQHLNLQGNHFPKGNI-QKTNSLQ-TLGRLEILVLSFCDLSSID-QH--AFTSLKMMNHVDLSHN 510 (606)
T ss_dssp ---TTCTTTTTTCTTCCEEECTTCBCGGGEE-CSSCGGG-GCTTCCEEECTTSCCCEEC-TT--TTTTCTTCCEEECCSS
T ss_pred ---CcCHHHHhCCCCCCEEECCCCCCCcccc-ccchhhc-cCCCccEEECCCCccCccC-hh--hhccccCCCEEECCCC
Confidence 0011223456667777777665432110 0012233 4556777776555432221 11 3456677777777665
Q ss_pred c
Q 012562 366 G 366 (461)
Q Consensus 366 ~ 366 (461)
.
T Consensus 511 ~ 511 (606)
T 3t6q_A 511 R 511 (606)
T ss_dssp C
T ss_pred c
Confidence 4
No 22
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.11 E-value=1.9e-11 Score=122.08 Aligned_cols=248 Identities=19% Similarity=0.178 Sum_probs=153.3
Q ss_pred cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccc
Q 012562 121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLL 199 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~L 199 (461)
+++++|+++... ...+|. +..+++|++|++++| .+.. +.+..+++|++|+|.++.+++- . . +.++++|
T Consensus 68 ~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~l~~n-----~l~~~~~~~~l~~L~~L~L~~n~l~~~-~--~-~~~l~~L 136 (466)
T 1o6v_A 68 NNLTQINFSNNQ-LTDITP-LKNLTKLVDILMNNN-----QIADITPLANLTNLTGLTLFNNQITDI-D--P-LKNLTNL 136 (466)
T ss_dssp TTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-----CCCCCGGGTTCTTCCEEECCSSCCCCC-G--G-GTTCTTC
T ss_pred cCCCEEECCCCc-cCCchh-hhccccCCEEECCCC-----ccccChhhcCCCCCCEEECCCCCCCCC-h--H-HcCCCCC
Confidence 577888875543 223343 566788888888888 5544 3366788888888888777654 1 1 6778888
Q ss_pred cceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCce-eeeCCCCceEEEEEEEee
Q 012562 200 EKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDF-AFEDLDSLQNAFIFFDII 278 (461)
Q Consensus 200 e~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~L~~l~l~~~~~ 278 (461)
+.|++++|.+.+... --..++|+.|.+.++. .+ ....-.+++|++|+++++..... .+..+++|+.+++..+..
T Consensus 137 ~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~~---~~-~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l 211 (466)
T 1o6v_A 137 NRLELSSNTISDISA-LSGLTSLQQLSFGNQV---TD-LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI 211 (466)
T ss_dssp SEEEEEEEEECCCGG-GTTCTTCSEEEEEESC---CC-CGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC
T ss_pred CEEECCCCccCCChh-hccCCcccEeecCCcc---cC-chhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCcc
Confidence 888888886554321 0113678888876332 11 11112567888888887554333 255678888888843221
Q ss_pred cCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcc
Q 012562 279 DRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLE 358 (461)
Q Consensus 279 ~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~ 358 (461)
.. ... +..+++|+.|+++++.+..+ ..+. .+++|++|++..+...... -+..+++|+
T Consensus 212 --~~--------~~~-~~~l~~L~~L~l~~n~l~~~------~~l~-~l~~L~~L~l~~n~l~~~~-----~~~~l~~L~ 268 (466)
T 1o6v_A 212 --SD--------ITP-LGILTNLDELSLNGNQLKDI------GTLA-SLTNLTDLDLANNQISNLA-----PLSGLTKLT 268 (466)
T ss_dssp --CC--------CGG-GGGCTTCCEEECCSSCCCCC------GGGG-GCTTCSEEECCSSCCCCCG-----GGTTCTTCS
T ss_pred --cc--------ccc-ccccCCCCEEECCCCCcccc------hhhh-cCCCCCEEECCCCccccch-----hhhcCCCCC
Confidence 00 111 45678888888888765532 2233 5668888888766542221 146788999
Q ss_pred eEEEEeccCCCccccccCcCccccccceeEEEEEe--ecCChhHHHHHHHHHhcCcCcceEEEEcc
Q 012562 359 ALTIYFEGEDCDDWKISNKSIFCLTCHLKTVELIH--VAGDENELELVRFLLKNGHVLKKLSFSWM 422 (461)
Q Consensus 359 ~L~l~~~~~~~~~~~~~~~~~~~~~~~Lk~v~i~~--~~g~~~e~~~~~~ll~~a~~Le~~~i~~~ 422 (461)
.|++..+... ..++...+++|+.+.+.+ +.+... +.+.+.|+.+.+...
T Consensus 269 ~L~l~~n~l~-------~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 269 ELKLGANQIS-------NISPLAGLTALTNLELNENQLEDISP--------ISNLKNLTYLTLYFN 319 (466)
T ss_dssp EEECCSSCCC-------CCGGGTTCTTCSEEECCSSCCSCCGG--------GGGCTTCSEEECCSS
T ss_pred EEECCCCccC-------ccccccCCCccCeEEcCCCcccCchh--------hcCCCCCCEEECcCC
Confidence 9988876531 111223457788888773 222221 578999999998843
No 23
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.10 E-value=1e-12 Score=128.11 Aligned_cols=234 Identities=15% Similarity=0.067 Sum_probs=113.2
Q ss_pred cCCeEEEEEEccee----eeCCCCcccCCCccEEEeceeccccccccC-----C--------CccccCcccEEEeeeEEE
Q 012562 121 RNVQVFDLTVYGEV----TELPHCLVTCESLEALKLACRQLRMCVLKL-----P--------FSVGFSRLKSLDLHNVEF 183 (461)
Q Consensus 121 ~~l~~L~l~~~~~~----~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-----~--------~~~~l~~L~~L~L~~~~~ 183 (461)
+++++|+|+.+... ..++..+..+++|++|+|++| .+.. | .+..+++|++|+|+++.+
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-----~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-----FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-----CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-----ccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 46777777433211 123334456778888888776 2221 1 124567888888888877
Q ss_pred cCh--hhHHHHhhcCccccceEEeeeecCCceEEEEe-----c---------CCcCeEEEeccCCCCCCCeE-E--EE-e
Q 012562 184 LDH--NLLHKFVSSRRLLEKLILKSCSFRDFKILDIS-----S---------TSLKSLTLDNFGGDESGNYK-V--KI-A 243 (461)
Q Consensus 184 ~~~--~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~-----~---------~~L~~L~l~~~~~~~~~~~~-~--~~-~ 243 (461)
++. ..+...+..+++|+.|+|++|.+.+.....+. . ++|++|.+.+|.+.+ ..+. + .+ .
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~~l~~ 185 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN-GSMKEWAKTFQS 185 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG-GGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc-HHHHHHHHHHHh
Confidence 664 12444566788888888888753211111111 1 577777777666411 1111 0 11 4
Q ss_pred cCCeeeEEEecCCCCce--------eeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhc
Q 012562 244 CPNLVSFNFLASWAPDF--------AFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHF 315 (461)
Q Consensus 244 ~p~L~~L~l~~~~~~~~--------~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~ 315 (461)
+++|++|.++++..... .+..+++|+.+++..+.. .......+...+..+++|+.|+|++|.+....
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l-----~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 260 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF-----THLGSSALAIALKSWPNLRELGLNDCLLSARG 260 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC-----HHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCC-----CcHHHHHHHHHHccCCCcCEEECCCCCCchhh
Confidence 56777777776543311 233455555555532211 00001223444555666666666665543221
Q ss_pred cccccccCC-cccCcccEEEEEEeCCCcc---hhhHhhhhccCCCcceEEEEecc
Q 012562 316 VLEERGFIP-NSFNYLKSLVLSVSMADWV---VPSIISLLNCSPNLEALTIYFEG 366 (461)
Q Consensus 316 ~~~~~~~l~-~~~~~L~~L~l~~~~~~~~---~l~~~~lL~~~p~L~~L~l~~~~ 366 (461)
....+..+. ..+++|++|+++.|..... .++. .+..++|+|+.|++..+.
T Consensus 261 ~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~-~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT-VIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH-HHHHHCTTCCEEECTTSB
T ss_pred HHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH-HHHhcCCCceEEEccCCc
Confidence 111111111 0144566666655543221 1111 022445666666655543
No 24
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.10 E-value=1.1e-11 Score=117.83 Aligned_cols=223 Identities=17% Similarity=0.098 Sum_probs=137.9
Q ss_pred CCCccEEEeceeccccccccC--CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEE-ecC
Q 012562 144 CESLEALKLACRQLRMCVLKL--PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDI-SST 220 (461)
Q Consensus 144 ~~~L~~L~L~~~~~~~~~l~~--~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i-~~~ 220 (461)
..+++.|+|+++ .+.. +....+++|++|+|.++.+.. +...+.++++|+.|+|++|.+..+.. .+ ..+
T Consensus 80 ~~~l~~L~L~~n-----~l~~lp~~l~~l~~L~~L~L~~n~l~~---lp~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~ 150 (328)
T 4fcg_A 80 QPGRVALELRSV-----PLPQFPDQAFRLSHLQHMTIDAAGLME---LPDTMQQFAGLETLTLARNPLRALPA-SIASLN 150 (328)
T ss_dssp STTCCEEEEESS-----CCSSCCSCGGGGTTCSEEEEESSCCCC---CCSCGGGGTTCSEEEEESCCCCCCCG-GGGGCT
T ss_pred ccceeEEEccCC-----CchhcChhhhhCCCCCEEECCCCCccc---hhHHHhccCCCCEEECCCCccccCcH-HHhcCc
Confidence 468999999999 5555 356779999999999998762 34446789999999999986543211 11 136
Q ss_pred CcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCceeeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCC
Q 012562 221 SLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCE 300 (461)
Q Consensus 221 ~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~ 300 (461)
+|++|.+.+|.. .+.+.. .+....+.+ .+..+++|+.+++..+... .. ...+..+++
T Consensus 151 ~L~~L~L~~n~~--~~~~p~-----~~~~~~~~~------~~~~l~~L~~L~L~~n~l~--~l--------p~~l~~l~~ 207 (328)
T 4fcg_A 151 RLRELSIRACPE--LTELPE-----PLASTDASG------EHQGLVNLQSLRLEWTGIR--SL--------PASIANLQN 207 (328)
T ss_dssp TCCEEEEEEETT--CCCCCS-----CSEEEC-CC------CEEESTTCCEEEEEEECCC--CC--------CGGGGGCTT
T ss_pred CCCEEECCCCCC--ccccCh-----hHhhccchh------hhccCCCCCEEECcCCCcC--cc--------hHhhcCCCC
Confidence 788888887653 111110 011111111 1334666666666544321 11 123567899
Q ss_pred ccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEeccCCCccccccCcCcc
Q 012562 301 VKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEGEDCDDWKISNKSIF 380 (461)
Q Consensus 301 l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~ 380 (461)
|+.|++++|.+..+. ..+. .+++|++|+++.|........ .+..+++|+.|++..+... ... |.
T Consensus 208 L~~L~L~~N~l~~l~-----~~l~-~l~~L~~L~Ls~n~~~~~~p~---~~~~l~~L~~L~L~~n~~~------~~~-p~ 271 (328)
T 4fcg_A 208 LKSLKIRNSPLSALG-----PAIH-HLPKLEELDLRGCTALRNYPP---IFGGRAPLKRLILKDCSNL------LTL-PL 271 (328)
T ss_dssp CCEEEEESSCCCCCC-----GGGG-GCTTCCEEECTTCTTCCBCCC---CTTCCCCCCEEECTTCTTC------CBC-CT
T ss_pred CCEEEccCCCCCcCc-----hhhc-cCCCCCEEECcCCcchhhhHH---HhcCCCCCCEEECCCCCch------hhc-ch
Confidence 999999999866332 2233 667999999987654333222 4678999999999886531 112 22
Q ss_pred --ccccceeEEEEEee--cCChhHHHHHHHHHhcCcCcceEEEE
Q 012562 381 --CLTCHLKTVELIHV--AGDENELELVRFLLKNGHVLKKLSFS 420 (461)
Q Consensus 381 --~~~~~Lk~v~i~~~--~g~~~e~~~~~~ll~~a~~Le~~~i~ 420 (461)
..+++|+.+.+.+- .|... --+.+.+.|+.+.+.
T Consensus 272 ~~~~l~~L~~L~L~~n~~~~~iP------~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 272 DIHRLTQLEKLDLRGCVNLSRLP------SLIAQLPANCIILVP 309 (328)
T ss_dssp TGGGCTTCCEEECTTCTTCCCCC------GGGGGSCTTCEEECC
T ss_pred hhhcCCCCCEEeCCCCCchhhcc------HHHhhccCceEEeCC
Confidence 23467777777632 22211 124678888888766
No 25
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.08 E-value=1.1e-10 Score=119.13 Aligned_cols=226 Identities=15% Similarity=0.146 Sum_probs=148.1
Q ss_pred cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCc
Q 012562 121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR 197 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp 197 (461)
+.+++|+++........|..+..+++|++|+|++| .+.. ..+..+++|++|+|+++.+.+ .....+.+++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-----~i~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~ 98 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-----RINTIEGDAFYSLGSLEHLDLSDNHLSS--LSSSWFGPLS 98 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-----CCCEECTTTTTTCTTCCEEECTTSCCCS--CCHHHHTTCT
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCC-----CcCccChhhccccccCCEEECCCCccCc--cCHHHhccCC
Confidence 47899999776544445666778999999999999 5444 357789999999999998876 3455578999
Q ss_pred cccceEEeeeecCCceEE-EE-ecCCcCeEEEeccCCCCCCCeE-EE-EecCCeeeEEEecCCCCce---eeeCCCCceE
Q 012562 198 LLEKLILKSCSFRDFKIL-DI-SSTSLKSLTLDNFGGDESGNYK-VK-IACPNLVSFNFLASWAPDF---AFEDLDSLQN 270 (461)
Q Consensus 198 ~Le~L~L~~c~~~~~~~~-~i-~~~~L~~L~l~~~~~~~~~~~~-~~-~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~ 270 (461)
+|++|++++|.+.+.... .+ ..++|++|.+..+.. .+.+. .. -.+++|++|.++++..... .+..+++|++
T Consensus 99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~--~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 176 (549)
T 2z81_A 99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET--FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176 (549)
T ss_dssp TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSS--CCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred CCcEEECCCCcccccchhhhhhccCCccEEECCCCcc--ccccCHhhhhcccccCeeeccCCcccccChhhhhccccCce
Confidence 999999999876543211 12 247899999998863 11111 01 2478999999998655433 3556778888
Q ss_pred EEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcch-hhHhh
Q 012562 271 AFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVV-PSIIS 349 (461)
Q Consensus 271 l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~-l~~~~ 349 (461)
+++..+.. ......++..+++++.|+++++.+...... +..+...+++|+.|++..+...... .....
T Consensus 177 L~l~~n~~---------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 245 (549)
T 2z81_A 177 LTLHLSES---------AFLLEIFADILSSVRYLELRDTNLARFQFS--PLPVDEVSSPMKKLAFRGSVLTDESFNELLK 245 (549)
T ss_dssp EEEECSBS---------TTHHHHHHHSTTTBSEEEEESCBCTTCCCC--CCSSCCCCCCCCEEEEESCEEEHHHHHHHHG
T ss_pred EecccCcc---------cccchhhHhhcccccEEEccCCcccccccc--ccchhhhhhcccceeccccccchhHHHHHHH
Confidence 88754322 111223456789999999999876543211 1111114568888888665432211 11222
Q ss_pred hhccCCCcceEEEEecc
Q 012562 350 LLNCSPNLEALTIYFEG 366 (461)
Q Consensus 350 lL~~~p~L~~L~l~~~~ 366 (461)
.+..+++|+.|++..+.
T Consensus 246 ~~~~~~~L~~l~l~~~~ 262 (549)
T 2z81_A 246 LLRYILELSEVEFDDCT 262 (549)
T ss_dssp GGGGCTTCCEEEEESCE
T ss_pred Hhhhhcccccccccccc
Confidence 45667777777776653
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.07 E-value=7.9e-12 Score=128.90 Aligned_cols=81 Identities=14% Similarity=0.174 Sum_probs=35.4
Q ss_pred cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC--C-CccccCcccEEEeeeEEEcChhhHHHHhhcCc
Q 012562 121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL--P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR 197 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~--~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp 197 (461)
++++.|++..+......|..+..+++|++|+|++| .+.. + .+..+++|++|+|.++.++. ....++.+++
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-----~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~ 147 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-----AIRYLPPHVFQNVPLLTVLVLERNDLSS--LPRGIFHNTP 147 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-----CCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCT
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-----cCCCCCHHHHcCCCCCCEEEeeCCCCCC--CCHHHhccCC
Confidence 34555555333222222223444555555555555 3322 1 23445555555555554432 1122234455
Q ss_pred cccceEEeeee
Q 012562 198 LLEKLILKSCS 208 (461)
Q Consensus 198 ~Le~L~L~~c~ 208 (461)
+|+.|+|++|.
T Consensus 148 ~L~~L~Ls~N~ 158 (597)
T 3oja_B 148 KLTTLSMSNNN 158 (597)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEeeCCc
Confidence 55555555543
No 27
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.05 E-value=5.7e-11 Score=121.73 Aligned_cols=215 Identities=18% Similarity=0.087 Sum_probs=88.7
Q ss_pred CCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccCCCccccCcccEEEeeeEEEcChhhHHHHhhcCccccc
Q 012562 122 NVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEK 201 (461)
Q Consensus 122 ~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~ 201 (461)
++++|++.... ...+|..+..+ +|++|++++| .+..-....+++|++|++.++..... +. ...+|.|+.
T Consensus 283 ~L~~L~l~~~~-l~~l~~~~~~~-~L~~L~l~~n-----~~~~l~~~~l~~L~~L~l~~n~~~~~--~~--~~~~~~L~~ 351 (570)
T 2z63_A 283 NVSSFSLVSVT-IERVKDFSYNF-GWQHLELVNC-----KFGQFPTLKLKSLKRLTFTSNKGGNA--FS--EVDLPSLEF 351 (570)
T ss_dssp TCSEEEEESCE-ECSCCBCCSCC-CCSEEEEESC-----BCSSCCBCBCSSCCEEEEESCBSCCB--CC--CCBCTTCCE
T ss_pred cccEEEecCcc-chhhhhhhccC-CccEEeeccC-----cccccCcccccccCEEeCcCCccccc--cc--cccCCCCCE
Confidence 44444443322 12344444444 5555555555 33221113455555555555443332 11 134555555
Q ss_pred eEEeeeecCCceEEE--E-ecCCcCeEEEeccCCCCCCCeE-EEEecCCeeeEEEecCCCCc----eeeeCCCCceEEEE
Q 012562 202 LILKSCSFRDFKILD--I-SSTSLKSLTLDNFGGDESGNYK-VKIACPNLVSFNFLASWAPD----FAFEDLDSLQNAFI 273 (461)
Q Consensus 202 L~L~~c~~~~~~~~~--i-~~~~L~~L~l~~~~~~~~~~~~-~~~~~p~L~~L~l~~~~~~~----~~~~~~~~L~~l~l 273 (461)
|++++|.+.+..... + ..++|++|.+..|.+ .... ....+++|++|.+.++.... ..+..+++|+.+++
T Consensus 352 L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 428 (570)
T 2z63_A 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV---ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428 (570)
T ss_dssp EECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSE---EEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEEC
T ss_pred EeCcCCccCccccccccccccCccCEEECCCCcc---ccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeC
Confidence 555554322211100 0 125555555555442 1111 11245556666555532111 12344555555555
Q ss_pred EEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhcc
Q 012562 274 FFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNC 353 (461)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~ 353 (461)
..+.. .......+.++++|+.|++.+|.+.. ...+..+. .+++|+.|+++.+...... +. .+..
T Consensus 429 ~~n~l---------~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~p~~~~-~l~~L~~L~l~~n~l~~~~-~~--~~~~ 492 (570)
T 2z63_A 429 SHTHT---------RVAFNGIFNGLSSLEVLKMAGNSFQE---NFLPDIFT-ELRNLTFLDLSQCQLEQLS-PT--AFNS 492 (570)
T ss_dssp TTSCC---------EECCTTTTTTCTTCCEEECTTCEEGG---GEECSCCT-TCTTCCEEECTTSCCCEEC-TT--TTTT
T ss_pred cCCcc---------cccchhhhhcCCcCcEEECcCCcCcc---ccchhhhh-cccCCCEEECCCCccccCC-hh--hhhc
Confidence 21110 00011223345566666666554321 00112222 4446666666444332111 11 3345
Q ss_pred CCCcceEEEEecc
Q 012562 354 SPNLEALTIYFEG 366 (461)
Q Consensus 354 ~p~L~~L~l~~~~ 366 (461)
+++|+.|++..+.
T Consensus 493 l~~L~~L~l~~n~ 505 (570)
T 2z63_A 493 LSSLQVLNMASNQ 505 (570)
T ss_dssp CTTCCEEECCSSC
T ss_pred ccCCCEEeCCCCc
Confidence 5666666665543
No 28
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.04 E-value=5.6e-12 Score=133.87 Aligned_cols=228 Identities=19% Similarity=0.112 Sum_probs=145.5
Q ss_pred cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC--C-CccccCcccEEEeeeEEEcChhhHHHHhhcCc
Q 012562 121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL--P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR 197 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~--~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp 197 (461)
.++++|++..+.....+|..+..+++|++|+|++| .+.. | .+..+++|++|+|.++.+.+ .+...+..++
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N-----~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~~~~l~ 466 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN-----YLSGTIPSSLGSLSKLRDLKLWLNMLEG--EIPQELMYVK 466 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSS-----EEESCCCGGGGGCTTCCEEECCSSCCCS--CCCGGGGGCT
T ss_pred CCccEEECCCCccccccCHHHhcCCCCCEEECcCC-----cccCcccHHHhcCCCCCEEECCCCcccC--cCCHHHcCCC
Confidence 46888888766656678888888999999999998 5543 3 46678889999988887765 3444567788
Q ss_pred cccceEEeeeecCCceEEEEe-cCCcCeEEEeccCCCCCCCeEEE-EecCCeeeEEEecCCCC---ceeeeCCCCceEEE
Q 012562 198 LLEKLILKSCSFRDFKILDIS-STSLKSLTLDNFGGDESGNYKVK-IACPNLVSFNFLASWAP---DFAFEDLDSLQNAF 272 (461)
Q Consensus 198 ~Le~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~~~-~~~p~L~~L~l~~~~~~---~~~~~~~~~L~~l~ 272 (461)
.|+.|++++|.+.+.....+. .++|+.|.+.+|.+ .+.+.-. -.+++|++|+++++... +..+..+++|+.++
T Consensus 467 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l--~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 544 (768)
T 3rgz_A 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL--TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC--CSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEE
T ss_pred CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCcc--CCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEE
Confidence 888888888875543222222 37788888888775 2222211 25678888888875443 22355677788877
Q ss_pred EEEEeecCCCCchhh---------------------------------------------H-----------------HH
Q 012562 273 IFFDIIDRDERDNES---------------------------------------------C-----------------HI 290 (461)
Q Consensus 273 l~~~~~~~~~~~~~~---------------------------------------------~-----------------~~ 290 (461)
+..+... +..|... . ..
T Consensus 545 Ls~N~l~-g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~ 623 (768)
T 3rgz_A 545 LNTNLFN-GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 623 (768)
T ss_dssp CCSSEEE-SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEE
T ss_pred CCCCccC-CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceeccc
Confidence 7322110 0000000 0 00
Q ss_pred HHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEecc
Q 012562 291 LSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEG 366 (461)
Q Consensus 291 ~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~~ 366 (461)
....+..+++++.|++++|.+.. ..+..+. .+++|+.|+++.+........ -+..+++|+.|++..+.
T Consensus 624 ~~~~~~~l~~L~~LdLs~N~l~g----~ip~~l~-~l~~L~~L~Ls~N~l~g~ip~---~l~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 624 TSPTFDNNGSMMFLDMSYNMLSG----YIPKEIG-SMPYLFILNLGHNDISGSIPD---EVGDLRGLNILDLSSNK 691 (768)
T ss_dssp CCCSCSSSBCCCEEECCSSCCBS----CCCGGGG-GCTTCCEEECCSSCCCSCCCG---GGGGCTTCCEEECCSSC
T ss_pred CchhhhccccccEEECcCCcccc----cCCHHHh-ccccCCEEeCcCCccCCCCCh---HHhCCCCCCEEECCCCc
Confidence 00113346789999999987652 1233344 667889999887765444433 45778899999988765
No 29
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.04 E-value=5.2e-10 Score=115.12 Aligned_cols=261 Identities=12% Similarity=-0.021 Sum_probs=155.2
Q ss_pred CcccCCCccEEEeceeccccccccC-C-CccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecC-CceEEE
Q 012562 140 CLVTCESLEALKLACRQLRMCVLKL-P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFR-DFKILD 216 (461)
Q Consensus 140 ~l~~~~~L~~L~L~~~~~~~~~l~~-~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~-~~~~~~ 216 (461)
.+..+++|+.|.+..+ .... + ....+++|++|+|.++.+++. .+..++.+||+|+.|++..+... ++..+.
T Consensus 265 ~l~~~~~L~~L~l~~~-----~~~~l~~~~~~~~~L~~L~Ls~~~l~~~-~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~ 338 (592)
T 3ogk_B 265 NLVFPRKLCRLGLSYM-----GPNEMPILFPFAAQIRKLDLLYALLETE-DHCTLIQKCPNLEVLETRNVIGDRGLEVLA 338 (592)
T ss_dssp CCCCCTTCCEEEETTC-----CTTTGGGGGGGGGGCCEEEETTCCCCHH-HHHHHHTTCTTCCEEEEEGGGHHHHHHHHH
T ss_pred HhhccccccccCcccc-----chhHHHHHHhhcCCCcEEecCCCcCCHH-HHHHHHHhCcCCCEEeccCccCHHHHHHHH
Confidence 3344556666655544 2222 2 344688999999999887666 77777889999999999854211 111111
Q ss_pred EecCCcCeEEEec----------cCCCCCCCeE-EEEecCCeeeEEEecCCCCcee---ee-CCCCceEEEEEEEe--ec
Q 012562 217 ISSTSLKSLTLDN----------FGGDESGNYK-VKIACPNLVSFNFLASWAPDFA---FE-DLDSLQNAFIFFDI--ID 279 (461)
Q Consensus 217 i~~~~L~~L~l~~----------~~~~~~~~~~-~~~~~p~L~~L~l~~~~~~~~~---~~-~~~~L~~l~l~~~~--~~ 279 (461)
-.+++|++|.+.+ |.......+. +.-.+|+|++|.+..+...... +. .+++|+++++.... ..
T Consensus 339 ~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~ 418 (592)
T 3ogk_B 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREER 418 (592)
T ss_dssp HHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSC
T ss_pred HhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcc
Confidence 1257899999994 3321111111 1124799999999664443322 22 38899999995321 01
Q ss_pred CCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcce
Q 012562 280 RDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEA 359 (461)
Q Consensus 280 ~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~ 359 (461)
..+.|. ...+..++.++++|+.|+++.+.-. +.... +..+...+++|++|+++.+..+...+.. +++.||+|+.
T Consensus 419 l~~~p~--~~~~~~~~~~~~~L~~L~L~~~~~~-l~~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~--~~~~~~~L~~ 492 (592)
T 3ogk_B 419 ITDLPL--DNGVRSLLIGCKKLRRFAFYLRQGG-LTDLG-LSYIGQYSPNVRWMLLGYVGESDEGLME--FSRGCPNLQK 492 (592)
T ss_dssp CSSCCC--HHHHHHHHHHCTTCCEEEEECCGGG-CCHHH-HHHHHHSCTTCCEEEECSCCSSHHHHHH--HHTCCTTCCE
T ss_pred ccCchH--HHHHHHHHHhCCCCCEEEEecCCCC-ccHHH-HHHHHHhCccceEeeccCCCCCHHHHHH--HHhcCcccCe
Confidence 122222 3457778889999999999653211 11110 1222214668999999877655555555 7899999999
Q ss_pred EEEEeccCCCccccccCcC-ccccccceeEEEEEeecCChhHHHHHHHHHhcCcCcceEEEE
Q 012562 360 LTIYFEGEDCDDWKISNKS-IFCLTCHLKTVELIHVAGDENELELVRFLLKNGHVLKKLSFS 420 (461)
Q Consensus 360 L~l~~~~~~~~~~~~~~~~-~~~~~~~Lk~v~i~~~~g~~~e~~~~~~ll~~a~~Le~~~i~ 420 (461)
|+|..+... .. ..+ ....+++|+.+.+.+..-.... ++.+.+..+.|....+.
T Consensus 493 L~l~~n~l~----~~-~~~~~~~~l~~L~~L~ls~n~it~~~---~~~l~~~~p~l~~~~~~ 546 (592)
T 3ogk_B 493 LEMRGCCFS----ER-AIAAAVTKLPSLRYLWVQGYRASMTG---QDLMQMARPYWNIELIP 546 (592)
T ss_dssp EEEESCCCB----HH-HHHHHHHHCSSCCEEEEESCBCCTTC---TTGGGGCCTTEEEEEEC
T ss_pred eeccCCCCc----HH-HHHHHHHhcCccCeeECcCCcCCHHH---HHHHHHhCCCcEEEEec
Confidence 999998621 00 010 0113478999988855432221 23344566766665555
No 30
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.04 E-value=7.9e-12 Score=129.19 Aligned_cols=138 Identities=21% Similarity=0.105 Sum_probs=73.1
Q ss_pred cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccc
Q 012562 121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLL 199 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~L 199 (461)
.+++.|++.... ...+| .+..+++|++|++++| .+.. |.. .+++|++|++.++..... + -+..+|.|
T Consensus 285 ~~L~~L~l~~~~-~~~l~-~l~~~~~L~~L~l~~n-----~l~~lp~~-~l~~L~~L~l~~n~~~~~--~--~~~~l~~L 352 (606)
T 3vq2_A 285 ANVSAMSLAGVS-IKYLE-DVPKHFKWQSLSIIRC-----QLKQFPTL-DLPFLKSLTLTMNKGSIS--F--KKVALPSL 352 (606)
T ss_dssp TTCSEEEEESCC-CCCCC-CCCTTCCCSEEEEESC-----CCSSCCCC-CCSSCCEEEEESCSSCEE--C--CCCCCTTC
T ss_pred CCCCEEEecCcc-chhhh-hccccccCCEEEcccc-----cCcccccC-CCCccceeeccCCcCccc--h--hhccCCCC
Confidence 578888886543 23455 5666778888888888 5433 444 677777777776633222 1 23456777
Q ss_pred cceEEeeeecCCceEEE---EecCCcCeEEEeccCCCCCCCeEEEE-ecCCeeeEEEecCCCCc----eeeeCCCCceEE
Q 012562 200 EKLILKSCSFRDFKILD---ISSTSLKSLTLDNFGGDESGNYKVKI-ACPNLVSFNFLASWAPD----FAFEDLDSLQNA 271 (461)
Q Consensus 200 e~L~L~~c~~~~~~~~~---i~~~~L~~L~l~~~~~~~~~~~~~~~-~~p~L~~L~l~~~~~~~----~~~~~~~~L~~l 271 (461)
+.|++++|.+.+..... ...++|+.|.+..|.+ ..+.-.+ .+++|++|.++++.... ..+..+++|+.+
T Consensus 353 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 429 (606)
T 3vq2_A 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA---IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429 (606)
T ss_dssp CEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSE---EEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEE
T ss_pred CEEECcCCccCCCcchhhhhccCCcccEeECCCCcc---ccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEE
Confidence 77777665432211000 0125666666665542 1111011 34566666665532211 123445566666
Q ss_pred EE
Q 012562 272 FI 273 (461)
Q Consensus 272 ~l 273 (461)
++
T Consensus 430 ~l 431 (606)
T 3vq2_A 430 DI 431 (606)
T ss_dssp EC
T ss_pred EC
Confidence 65
No 31
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.03 E-value=8.6e-12 Score=128.91 Aligned_cols=266 Identities=14% Similarity=0.028 Sum_probs=169.7
Q ss_pred cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC----CCccccCcccEEEeeeEEEcChhhHHHHhhcC
Q 012562 121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL----PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSR 196 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~----~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~c 196 (461)
+++++|++..+......|..+..+++|++|++++| .+.. ..+..+++|++|+|.++.+.+.......+.++
T Consensus 301 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-----~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 375 (606)
T 3t6q_A 301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGN-----TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375 (606)
T ss_dssp TTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSC-----SSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTC
T ss_pred ccCCEEECccCCcCcCchhhhhccCcCCEEECCCC-----CcccccchhhhhccCcCCEEECCCCccccccCcchhcccC
Confidence 35666666443322333456677999999999999 4432 24678999999999998876541123447789
Q ss_pred ccccceEEeeeecCCceEEEE-ecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCc---eeeeCCCCceEEE
Q 012562 197 RLLEKLILKSCSFRDFKILDI-SSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPD---FAFEDLDSLQNAF 272 (461)
Q Consensus 197 p~Le~L~L~~c~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~---~~~~~~~~L~~l~ 272 (461)
+.|+.|++++|...+.....+ ..++|+.|.+..|.+.........-.+++|++|+++++.... ..+..+++|+.++
T Consensus 376 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 455 (606)
T 3t6q_A 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN 455 (606)
T ss_dssp TTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEE
Confidence 999999999985322111111 137899999998774211111111257899999999865432 2356789999999
Q ss_pred EEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhc
Q 012562 273 IFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLN 352 (461)
Q Consensus 273 l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~ 352 (461)
+.-+.......+ ....+..+++|+.|++++|.+..+. +..+. .+++|++|+++.+........ .+.
T Consensus 456 L~~n~l~~~~~~------~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~-~l~~L~~L~Ls~N~l~~~~~~---~l~ 521 (606)
T 3t6q_A 456 LQGNHFPKGNIQ------KTNSLQTLGRLEILVLSFCDLSSID----QHAFT-SLKMMNHVDLSHNRLTSSSIE---ALS 521 (606)
T ss_dssp CTTCBCGGGEEC------SSCGGGGCTTCCEEECTTSCCCEEC----TTTTT-TCTTCCEEECCSSCCCGGGGG---GGT
T ss_pred CCCCCCCccccc------cchhhccCCCccEEECCCCccCccC----hhhhc-cccCCCEEECCCCccCcCChh---HhC
Confidence 943321000000 0123567899999999999765322 23344 677999999987765443322 457
Q ss_pred cCCCcceEEEEeccCCCccccccCcCcc--ccccceeEEEEE--eecCChhHHHHHHHHHhcCcC
Q 012562 353 CSPNLEALTIYFEGEDCDDWKISNKSIF--CLTCHLKTVELI--HVAGDENELELVRFLLKNGHV 413 (461)
Q Consensus 353 ~~p~L~~L~l~~~~~~~~~~~~~~~~~~--~~~~~Lk~v~i~--~~~g~~~e~~~~~~ll~~a~~ 413 (461)
.+++| .|++..+.-. ..++. ..+++|+.+.+. .+.+.+....|+.++-++...
T Consensus 522 ~l~~L-~L~L~~N~l~-------~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~~~~~~~ 578 (606)
T 3t6q_A 522 HLKGI-YLNLASNHIS-------IILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQK 578 (606)
T ss_dssp TCCSC-EEECCSSCCC-------CCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHHHHCGGG
T ss_pred ccccc-EEECcCCccc-------ccCHhhcccCCCCCEEeCCCCCccccCCcHHHHHHHHhCccc
Confidence 78888 8887776531 12122 235678888887 566677778888888766443
No 32
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.02 E-value=2.5e-10 Score=109.62 Aligned_cols=132 Identities=18% Similarity=0.066 Sum_probs=80.0
Q ss_pred eeeCCCCcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecC
Q 012562 134 VTELPHCLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFR 210 (461)
Q Consensus 134 ~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~ 210 (461)
...+|..+. ++|++|+|+++ .+.. ..+..+++|++|+|.++.+++. ....+.+++.|++|++++|.+.
T Consensus 43 l~~iP~~~~--~~L~~L~l~~n-----~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 43 LNSIPSGLT--EAVKSLDLSNN-----RITYISNSDLQRCVNLQALVLTSNGINTI--EEDSFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp CSSCCTTCC--TTCCEEECTTS-----CCCEECTTTTTTCTTCCEEECTTSCCCEE--CTTTTTTCTTCCEEECCSSCCS
T ss_pred ccccccccc--ccCcEEECCCC-----cCcccCHHHhccCCCCCEEECCCCccCcc--CHhhcCCCCCCCEEECCCCcCC
Confidence 345666554 48999999999 5444 2567899999999998877642 2334678899999999998655
Q ss_pred CceEEEEe-cCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCC-CCce---eeeCCCCceEEEEE
Q 012562 211 DFKILDIS-STSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASW-APDF---AFEDLDSLQNAFIF 274 (461)
Q Consensus 211 ~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~-~~~~---~~~~~~~L~~l~l~ 274 (461)
++..-.+. .++|++|.+.++.+.........-.+++|++|.++++. .... .+..+++|+++++.
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 182 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC
Confidence 43221111 36778888777764211110011246677777777642 2221 23345555555553
No 33
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.02 E-value=4.5e-11 Score=121.16 Aligned_cols=96 Identities=15% Similarity=0.076 Sum_probs=59.7
Q ss_pred cccEEEEEEeccCCc--hhHHHHHHHHHhcCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC---C-Cc
Q 012562 94 SIQRFRLYCLSYAND--YTVYRWVCAVARRNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL---P-FS 167 (461)
Q Consensus 94 ~i~~l~l~~~~~~~~--~~~~~wi~~~~~~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~-~~ 167 (461)
.++.+.++....... ..+. ..+++++|+++.+.. ..+|.. .+++|++|+|++| .+.. | .+
T Consensus 46 ~L~~L~Ls~n~l~~~~~~~~~------~l~~L~~L~Ls~N~l-~~lp~~--~l~~L~~L~L~~N-----~l~~~~~p~~~ 111 (520)
T 2z7x_B 46 KLRILIISHNRIQYLDISVFK------FNQELEYLDLSHNKL-VKISCH--PTVNLKHLDLSFN-----AFDALPICKEF 111 (520)
T ss_dssp TCCEEECCSSCCCEEEGGGGT------TCTTCCEEECCSSCC-CEEECC--CCCCCSEEECCSS-----CCSSCCCCGGG
T ss_pred cccEEecCCCccCCcChHHhh------cccCCCEEecCCCce-eecCcc--ccCCccEEeccCC-----ccccccchhhh
Confidence 577777775542211 1111 125788888866542 256665 7888999999988 5433 3 56
Q ss_pred cccCcccEEEeeeEEEcChhhHHHHhhcCccc--cceEEeeee
Q 012562 168 VGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLL--EKLILKSCS 208 (461)
Q Consensus 168 ~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~L--e~L~L~~c~ 208 (461)
..+++|++|+|.++.+.+. . +.+++.| +.|++.+|.
T Consensus 112 ~~l~~L~~L~L~~n~l~~~-~----~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 112 GNMSQLKFLGLSTTHLEKS-S----VLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp GGCTTCCEEEEEESSCCGG-G----GGGGTTSCEEEEEEEECT
T ss_pred ccCCcceEEEecCcccchh-h----ccccccceeeEEEeeccc
Confidence 6788999999988877643 2 3344555 666665553
No 34
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.01 E-value=2.7e-11 Score=115.32 Aligned_cols=142 Identities=14% Similarity=0.100 Sum_probs=66.4
Q ss_pred cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccCCCccccCcccEEEeeeEEEcChhhHHHHhhcCcccc
Q 012562 121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLE 200 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le 200 (461)
+++++|++..+......|..+..+++|++|+|+++ .+..-....+++|++|++.++.+.+ .....+.+++.|+
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-----~l~~l~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~ 148 (330)
T 1xku_A 76 KNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-----QLKELPEKMPKTLQELRVHENEITK--VRKSVFNGLNQMI 148 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-----CCSBCCSSCCTTCCEEECCSSCCCB--BCHHHHTTCTTCC
T ss_pred CCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-----cCCccChhhcccccEEECCCCcccc--cCHhHhcCCcccc
Confidence 35666666444322223444555666666666666 3333111122566666666665554 2233455666666
Q ss_pred ceEEeeeecCCceE--EEEe-cCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCce---eeeCCCCceEEEE
Q 012562 201 KLILKSCSFRDFKI--LDIS-STSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDF---AFEDLDSLQNAFI 273 (461)
Q Consensus 201 ~L~L~~c~~~~~~~--~~i~-~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~l~l 273 (461)
.|++++|....... ..+. .++|+.|.+..+.+. .+... ..++|++|.++++..... .+..+++|+.+++
T Consensus 149 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~---~l~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 223 (330)
T 1xku_A 149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT---TIPQG-LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 223 (330)
T ss_dssp EEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC---SCCSS-CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEEC
T ss_pred EEECCCCcCCccCcChhhccCCCCcCEEECCCCccc---cCCcc-ccccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 66666654321100 0011 255666666655531 11100 115666666655433322 2334455555555
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.00 E-value=9.4e-11 Score=114.26 Aligned_cols=258 Identities=14% Similarity=0.040 Sum_probs=131.9
Q ss_pred cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC--C-CccccCcccEEEeeeEEEcChhhHHHHhhcCc
Q 012562 121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL--P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR 197 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~--~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp 197 (461)
+++++|++.........|..+..+++|++|+|+++ .+.. + .+..+++|++|+|.++.++.- ...++.+++
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-----~l~~~~~~~~~~l~~L~~L~L~~n~l~~l--~~~~~~~l~ 141 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-----AIRYLPPHVFQNVPLLTVLVLERNDLSSL--PRGIFHNTP 141 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-----CCCCCCTTTTTTCTTCCEEECCSSCCCCC--CTTTTTTCT
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCC-----CCCcCCHHHhcCCCCCCEEECCCCccCcC--CHHHhcCCC
Confidence 46777776443322222234445667777777766 4333 2 245566666776666655531 222345566
Q ss_pred cccceEEeeeecCCceEEEEe-cCCcCeEEEeccCCCCCC---------------CeEEEEecCCeeeEEEecCCCCcee
Q 012562 198 LLEKLILKSCSFRDFKILDIS-STSLKSLTLDNFGGDESG---------------NYKVKIACPNLVSFNFLASWAPDFA 261 (461)
Q Consensus 198 ~Le~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~~~~~~---------------~~~~~~~~p~L~~L~l~~~~~~~~~ 261 (461)
.|++|++++|.+.+...-.+. .++|+.|.+..+.+.... .+...-..++|++|.++++......
T Consensus 142 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~ 221 (390)
T 3o6n_A 142 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR 221 (390)
T ss_dssp TCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEE
T ss_pred CCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecc
Confidence 666666666643322111111 255666666655431110 0000012345566666554444433
Q ss_pred eeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCC
Q 012562 262 FEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMAD 341 (461)
Q Consensus 262 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~ 341 (461)
....++|+.+++.-+... . . ..+..+++|+.|++++|.+..+. +..+. .+++|++|+++.+...
T Consensus 222 ~~~~~~L~~L~l~~n~l~--~--------~-~~l~~l~~L~~L~Ls~n~l~~~~----~~~~~-~l~~L~~L~L~~n~l~ 285 (390)
T 3o6n_A 222 GPVNVELTILKLQHNNLT--D--------T-AWLLNYPGLVEVDLSYNELEKIM----YHPFV-KMQRLERLYISNNRLV 285 (390)
T ss_dssp CCCCSSCCEEECCSSCCC--C--------C-GGGGGCTTCSEEECCSSCCCEEE----SGGGT-TCSSCCEEECCSSCCC
T ss_pred ccccccccEEECCCCCCc--c--------c-HHHcCCCCccEEECCCCcCCCcC----hhHcc-ccccCCEEECCCCcCc
Confidence 333456666666322110 0 1 23556788888888887655321 22233 5568888888666432
Q ss_pred cchhhHhhhhccCCCcceEEEEeccCCCccccccCcCcc--ccccceeEEEEEeecCChhHHHHHHHHHhcCcCcceEEE
Q 012562 342 WVVPSIISLLNCSPNLEALTIYFEGEDCDDWKISNKSIF--CLTCHLKTVELIHVAGDENELELVRFLLKNGHVLKKLSF 419 (461)
Q Consensus 342 ~~~l~~~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~--~~~~~Lk~v~i~~~~g~~~e~~~~~~ll~~a~~Le~~~i 419 (461)
. ++. ....+|+|+.|++..+.-. .+ +. ..+++|+.+.+.+-.-. .+. +...+.|+.+.+
T Consensus 286 ~--~~~--~~~~l~~L~~L~L~~n~l~-------~~-~~~~~~l~~L~~L~L~~N~i~--~~~-----~~~~~~L~~L~l 346 (390)
T 3o6n_A 286 A--LNL--YGQPIPTLKVLDLSHNHLL-------HV-ERNQPQFDRLENLYLDHNSIV--TLK-----LSTHHTLKNLTL 346 (390)
T ss_dssp E--EEC--SSSCCTTCCEEECCSSCCC-------CC-GGGHHHHTTCSEEECCSSCCC--CCC-----CCTTCCCSEEEC
T ss_pred c--cCc--ccCCCCCCCEEECCCCcce-------ec-CccccccCcCCEEECCCCccc--eeC-----chhhccCCEEEc
Confidence 2 122 3356788888888776531 11 11 13466777776632111 111 466788888887
Q ss_pred E
Q 012562 420 S 420 (461)
Q Consensus 420 ~ 420 (461)
.
T Consensus 347 ~ 347 (390)
T 3o6n_A 347 S 347 (390)
T ss_dssp C
T ss_pred C
Confidence 7
No 36
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.99 E-value=4.3e-11 Score=123.68 Aligned_cols=108 Identities=17% Similarity=-0.007 Sum_probs=49.6
Q ss_pred ecCCeeeEEEecC-CCCceeeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccc
Q 012562 243 ACPNLVSFNFLAS-WAPDFAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERG 321 (461)
Q Consensus 243 ~~p~L~~L~l~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~ 321 (461)
.+++|++|.++++ ......+..+++|+.+++.-+... .. ......+..+++|+.|++++|.+..+. .
T Consensus 326 ~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~--~~-----~~~~~~~~~~~~L~~L~L~~n~l~~~~-----~ 393 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALS--FS-----GCCSYSDLGTNSLRHLDLSFNGAIIMS-----A 393 (606)
T ss_dssp CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEE--EE-----EECCHHHHCCSCCCEEECCSCSEEEEC-----C
T ss_pred CCCccceeeccCCcCccchhhccCCCCCEEECcCCccC--CC-----cchhhhhccCCcccEeECCCCccccch-----h
Confidence 4455555555553 112223445566666666211110 00 001233456777777777776644221 2
Q ss_pred cCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEec
Q 012562 322 FIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFE 365 (461)
Q Consensus 322 ~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~ 365 (461)
.+. .+++|++|++..+......... .+..+++|+.|++..+
T Consensus 394 ~~~-~l~~L~~L~l~~n~l~~~~~~~--~~~~l~~L~~L~l~~n 434 (606)
T 3vq2_A 394 NFM-GLEELQHLDFQHSTLKRVTEFS--AFLSLEKLLYLDISYT 434 (606)
T ss_dssp CCT-TCTTCCEEECTTSEEESTTTTT--TTTTCTTCCEEECTTS
T ss_pred hcc-CCCCCCeeECCCCccCCccChh--hhhccccCCEEECcCC
Confidence 222 4456666666444321111101 3445566666666554
No 37
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.99 E-value=3.7e-11 Score=111.84 Aligned_cols=197 Identities=17% Similarity=0.112 Sum_probs=94.7
Q ss_pred CCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeee-cCCceEEEEe-c
Q 012562 145 ESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCS-FRDFKILDIS-S 219 (461)
Q Consensus 145 ~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~-~~~~~~~~i~-~ 219 (461)
++|++|+|+++ .+.. ..+..+++|++|+|.++.+++. ....+.+++.|+.|++++|. ......-.+. .
T Consensus 32 ~~l~~L~l~~n-----~i~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l 104 (285)
T 1ozn_A 32 AASQRIFLHGN-----RISHVPAASFRACRNLTILWLHSNVLARI--DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL 104 (285)
T ss_dssp TTCSEEECTTS-----CCCEECTTTTTTCTTCCEEECCSSCCCEE--CTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTC
T ss_pred CCceEEEeeCC-----cCCccCHHHcccCCCCCEEECCCCcccee--CHhhcCCccCCCEEeCCCCCCccccCHHHhcCC
Confidence 45666666666 3332 1344566666666665554431 12234556666666666653 2222110111 2
Q ss_pred CCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCcee---eeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHh
Q 012562 220 TSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFA---FEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLN 296 (461)
Q Consensus 220 ~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~ 296 (461)
++|++|.+.++.+..... ...-.+++|++|.++++...... +..+++|+.+++..+.. ...+ ...+.
T Consensus 105 ~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~~~-------~~~~~ 174 (285)
T 1ozn_A 105 GRLHTLHLDRCGLQELGP-GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI--SSVP-------ERAFR 174 (285)
T ss_dssp TTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC--CEEC-------TTTTT
T ss_pred cCCCEEECCCCcCCEECH-hHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc--cccC-------HHHhc
Confidence 556666666555311100 00113567777777764433221 34455566555532211 0000 01234
Q ss_pred cCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEecc
Q 012562 297 ELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEG 366 (461)
Q Consensus 297 ~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~~ 366 (461)
.+++|+.|++++|.+..+. +..+. .+++|++|++..+...... .. .+..+++|+.|++..+.
T Consensus 175 ~l~~L~~L~l~~n~l~~~~----~~~~~-~l~~L~~L~l~~n~l~~~~-~~--~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 175 GLHSLDRLLLHQNRVAHVH----PHAFR-DLGRLMTLYLFANNLSALP-TE--ALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TCTTCCEEECCSSCCCEEC----TTTTT-TCTTCCEEECCSSCCSCCC-HH--HHTTCTTCCEEECCSSC
T ss_pred CccccCEEECCCCcccccC----HhHcc-CcccccEeeCCCCcCCcCC-HH--HcccCcccCEEeccCCC
Confidence 5667777777776544221 22333 4557777777665432211 11 35667777777776654
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.98 E-value=1.9e-11 Score=119.16 Aligned_cols=269 Identities=15% Similarity=0.081 Sum_probs=154.1
Q ss_pred cCCeEEEEEEcceeeeCCCCcc-cCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcC
Q 012562 121 RNVQVFDLTVYGEVTELPHCLV-TCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSR 196 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~c 196 (461)
.+++.|++.... ...+|..++ .+++|++|+|+++ .+.. ..+..+++|++|+|.++.+++. ....+.++
T Consensus 45 ~~l~~l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n-----~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l 116 (390)
T 3o6n_A 45 NNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDL-----QIEEIDTYAFAYAHTIQKLYMGFNAIRYL--PPHVFQNV 116 (390)
T ss_dssp CCCSEEEEESCE-ESEECTHHHHHCCCCSEEECTTS-----CCCEECTTTTTTCTTCCEEECCSSCCCCC--CTTTTTTC
T ss_pred CCceEEEecCCc-hhhCChhHhcccccCcEEECCCC-----cccccChhhccCCCCcCEEECCCCCCCcC--CHHHhcCC
Confidence 578889986543 556787754 5899999999999 5544 3567899999999999987753 34457889
Q ss_pred ccccceEEeeeecCCceEEEE-ecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCceeeeCCCCceEEEEEE
Q 012562 197 RLLEKLILKSCSFRDFKILDI-SSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFF 275 (461)
Q Consensus 197 p~Le~L~L~~c~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~ 275 (461)
+.|+.|++++|.+..+..-.. ..++|++|.+.++.+...... ..-.+++|++|.++++......+..+++|+.+++..
T Consensus 117 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 117 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSY 195 (390)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT-TTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCS
T ss_pred CCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChh-hccCCCCCCEEECCCCcCCccccccccccceeeccc
Confidence 999999999987553322111 247899999998875211110 112578999999998776666667778888777732
Q ss_pred EeecCCCCch-----h-hHHHHHHH-HhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHh
Q 012562 276 DIIDRDERDN-----E-SCHILSKL-LNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSII 348 (461)
Q Consensus 276 ~~~~~~~~~~-----~-~~~~~~~~-l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~ 348 (461)
+....-..+. + ....+..+ ....++++.|+++++.+... ..+. .+++|++|+++.+...... +.
T Consensus 196 n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~------~~l~-~l~~L~~L~Ls~n~l~~~~-~~- 266 (390)
T 3o6n_A 196 NLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT------AWLL-NYPGLVEVDLSYNELEKIM-YH- 266 (390)
T ss_dssp SCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC------GGGG-GCTTCSEEECCSSCCCEEE-SG-
T ss_pred ccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc------HHHc-CCCCccEEECCCCcCCCcC-hh-
Confidence 2110000000 0 00000000 00123455555555443311 1222 4456666666555432221 11
Q ss_pred hhhccCCCcceEEEEeccCCCccccccCcCccccccceeEEEEEe--ecCChhHHHHHHHHHhcCcCcceEEEEc
Q 012562 349 SLLNCSPNLEALTIYFEGEDCDDWKISNKSIFCLTCHLKTVELIH--VAGDENELELVRFLLKNGHVLKKLSFSW 421 (461)
Q Consensus 349 ~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~Lk~v~i~~--~~g~~~e~~~~~~ll~~a~~Le~~~i~~ 421 (461)
.+..+++|+.|++..+.-. ... . ....+++|+.+.+.+ +.+.... +.+.+.|+.+.+..
T Consensus 267 -~~~~l~~L~~L~L~~n~l~--~~~---~-~~~~l~~L~~L~L~~n~l~~~~~~-------~~~l~~L~~L~L~~ 327 (390)
T 3o6n_A 267 -PFVKMQRLERLYISNNRLV--ALN---L-YGQPIPTLKVLDLSHNHLLHVERN-------QPQFDRLENLYLDH 327 (390)
T ss_dssp -GGTTCSSCCEEECCSSCCC--EEE---C-SSSCCTTCCEEECCSSCCCCCGGG-------HHHHTTCSEEECCS
T ss_pred -HccccccCCEEECCCCcCc--ccC---c-ccCCCCCCCEEECCCCcceecCcc-------ccccCcCCEEECCC
Confidence 3455667777766665421 000 0 111346788777763 2222222 23457788888763
No 39
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.98 E-value=3.6e-11 Score=123.18 Aligned_cols=222 Identities=16% Similarity=0.090 Sum_probs=150.9
Q ss_pred CCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCcccc
Q 012562 122 NVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLE 200 (461)
Q Consensus 122 ~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le 200 (461)
++++|++..... ..+|. ..+++|++|+++++ .... .....+++|++|+|.++.++........+.+++.|+
T Consensus 305 ~L~~L~l~~n~~-~~l~~--~~l~~L~~L~l~~n-----~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~ 376 (570)
T 2z63_A 305 GWQHLELVNCKF-GQFPT--LKLKSLKRLTFTSN-----KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376 (570)
T ss_dssp CCSEEEEESCBC-SSCCB--CBCSSCCEEEEESC-----BSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCC
T ss_pred CccEEeeccCcc-cccCc--ccccccCEEeCcCC-----ccccccccccCCCCCEEeCcCCccCccccccccccccCccC
Confidence 788999965542 25665 46889999999999 5544 233789999999999988765322234577899999
Q ss_pred ceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCc---eeeeCCCCceEEEEEEEe
Q 012562 201 KLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPD---FAFEDLDSLQNAFIFFDI 277 (461)
Q Consensus 201 ~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~---~~~~~~~~L~~l~l~~~~ 277 (461)
.|++++|...+........++|++|.+.+|.+.........-.+++|++|.++++.... ..+..+++|+.+++.-+.
T Consensus 377 ~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 456 (570)
T 2z63_A 377 YLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456 (570)
T ss_dssp EEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred EEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCc
Confidence 99999986554433322358999999998764211111111257899999999864432 235678999999994322
Q ss_pred ecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCc
Q 012562 278 IDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNL 357 (461)
Q Consensus 278 ~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L 357 (461)
.. ...+...+..+++|+.|++++|.+..+. +..+. .+++|++|++..+...... +. .+..+++|
T Consensus 457 l~--------~~~~p~~~~~l~~L~~L~l~~n~l~~~~----~~~~~-~l~~L~~L~l~~n~l~~~~-~~--~~~~l~~L 520 (570)
T 2z63_A 457 FQ--------ENFLPDIFTELRNLTFLDLSQCQLEQLS----PTAFN-SLSSLQVLNMASNQLKSVP-DG--IFDRLTSL 520 (570)
T ss_dssp EG--------GGEECSCCTTCTTCCEEECTTSCCCEEC----TTTTT-TCTTCCEEECCSSCCSCCC-TT--TTTTCTTC
T ss_pred Cc--------cccchhhhhcccCCCEEECCCCccccCC----hhhhh-cccCCCEEeCCCCcCCCCC-HH--HhhcccCC
Confidence 10 0012233567899999999999765321 23344 6779999999877543322 22 56789999
Q ss_pred ceEEEEeccC
Q 012562 358 EALTIYFEGE 367 (461)
Q Consensus 358 ~~L~l~~~~~ 367 (461)
+.|++..+..
T Consensus 521 ~~L~l~~N~~ 530 (570)
T 2z63_A 521 QKIWLHTNPW 530 (570)
T ss_dssp CEEECCSSCB
T ss_pred cEEEecCCcc
Confidence 9999988764
No 40
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.98 E-value=5.2e-11 Score=119.44 Aligned_cols=209 Identities=19% Similarity=0.089 Sum_probs=122.5
Q ss_pred CCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCcccc
Q 012562 122 NVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLE 200 (461)
Q Consensus 122 ~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le 200 (461)
++++|+|+.+......|..+..+++|++|+|++| .+.. +.+..+++|++|+|++|.+++- ...|.|+
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-----~l~~~~~l~~l~~L~~L~Ls~N~l~~l-------~~~~~L~ 102 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-----VLYETLDLESLSTLRTLDLNNNYVQEL-------LVGPSIE 102 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-----CCEEEEECTTCTTCCEEECCSSEEEEE-------EECTTCC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-----CCCCCcccccCCCCCEEEecCCcCCCC-------CCCCCcC
Confidence 6888888665433333445666888888888888 5443 3366788888888888877652 2347888
Q ss_pred ceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEEE-ecCCeeeEEEecCCCCcee---e-eCCCCceEEEEEE
Q 012562 201 KLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKI-ACPNLVSFNFLASWAPDFA---F-EDLDSLQNAFIFF 275 (461)
Q Consensus 201 ~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~-~~p~L~~L~l~~~~~~~~~---~-~~~~~L~~l~l~~ 275 (461)
.|++++|.+.+... ...++|+.|.+.+|.+. +.....+ .+++|++|+++++...... + ..+++|+.++++.
T Consensus 103 ~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 103 TLHAANNNISRVSC--SRGQGKKNIYLANNKIT--MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (487)
T ss_dssp EEECCSSCCCCEEE--CCCSSCEEEECCSSCCC--SGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred EEECcCCcCCCCCc--cccCCCCEEECCCCCCC--CCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence 88888876554332 12367888888877742 1111122 4677888888776554432 2 2467777777732
Q ss_pred EeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCC
Q 012562 276 DIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSP 355 (461)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p 355 (461)
+... ..+ ....+++|+.|++++|.+..+.. .+. .+++|+.|+++.+.... ++. .+..+|
T Consensus 179 N~l~--~~~---------~~~~l~~L~~L~Ls~N~l~~~~~-----~~~-~l~~L~~L~Ls~N~l~~--lp~--~l~~l~ 237 (487)
T 3oja_A 179 NFIY--DVK---------GQVVFAKLKTLDLSSNKLAFMGP-----EFQ-SAAGVTWISLRNNKLVL--IEK--ALRFSQ 237 (487)
T ss_dssp SCCC--EEE---------CCCCCTTCCEEECCSSCCCEECG-----GGG-GGTTCSEEECTTSCCCE--ECT--TCCCCT
T ss_pred Cccc--ccc---------ccccCCCCCEEECCCCCCCCCCH-----hHc-CCCCccEEEecCCcCcc--cch--hhccCC
Confidence 2110 000 01136677777777776543221 122 45577777775554321 222 345667
Q ss_pred CcceEEEEeccC
Q 012562 356 NLEALTIYFEGE 367 (461)
Q Consensus 356 ~L~~L~l~~~~~ 367 (461)
+|+.|++.++..
T Consensus 238 ~L~~L~l~~N~l 249 (487)
T 3oja_A 238 NLEHFDLRGNGF 249 (487)
T ss_dssp TCCEEECTTCCB
T ss_pred CCCEEEcCCCCC
Confidence 777777766543
No 41
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.98 E-value=3.1e-11 Score=125.27 Aligned_cols=146 Identities=12% Similarity=0.076 Sum_probs=95.0
Q ss_pred cCCeEEEEEEcceeee-----------------CCCCcc--cCCCccEEEeceeccccccccC--C-CccccCcccEEEe
Q 012562 121 RNVQVFDLTVYGEVTE-----------------LPHCLV--TCESLEALKLACRQLRMCVLKL--P-FSVGFSRLKSLDL 178 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~-----------------lp~~l~--~~~~L~~L~L~~~~~~~~~l~~--~-~~~~l~~L~~L~L 178 (461)
+++++|+++.+..... +|..+. .+++|++|+|++| .+.. | .+..+++|++|+|
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n-----~l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC-----PNLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC-----TTCSSCCTTTTTCSSCCEEEC
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCC-----cCCccChHHHhcCCCCCEEEC
Confidence 5799999977654443 899998 8999999999999 5433 3 5678999999999
Q ss_pred eeEE-EcChhhHHHHh------hcCccccceEEeeeecCCceEE-EE-ecCCcCeEEEeccCCCCCCCeEEEEecCCeee
Q 012562 179 HNVE-FLDHNLLHKFV------SSRRLLEKLILKSCSFRDFKIL-DI-SSTSLKSLTLDNFGGDESGNYKVKIACPNLVS 249 (461)
Q Consensus 179 ~~~~-~~~~~~l~~l~------~~cp~Le~L~L~~c~~~~~~~~-~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~ 249 (461)
.++. +++. .+..-+ ..+++|+.|++.+|.+..+... .+ ..++|+.|.+..|.+ .+.+...-..++|++
T Consensus 281 s~n~~l~~~-~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l--~g~ip~~~~l~~L~~ 357 (636)
T 4eco_A 281 ACNRGISGE-QLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQL--EGKLPAFGSEIKLAS 357 (636)
T ss_dssp TTCTTSCHH-HHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCC--EEECCCCEEEEEESE
T ss_pred cCCCCCccc-cchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcC--ccchhhhCCCCCCCE
Confidence 9987 6652 233323 3458899999988865432210 11 236788888887764 112221125567777
Q ss_pred EEEecCCCCce--eeeCCCC-ceEEEEE
Q 012562 250 FNFLASWAPDF--AFEDLDS-LQNAFIF 274 (461)
Q Consensus 250 L~l~~~~~~~~--~~~~~~~-L~~l~l~ 274 (461)
|.++++....+ .+..+++ |+.+++.
T Consensus 358 L~L~~N~l~~lp~~l~~l~~~L~~L~Ls 385 (636)
T 4eco_A 358 LNLAYNQITEIPANFCGFTEQVENLSFA 385 (636)
T ss_dssp EECCSSEEEECCTTSEEECTTCCEEECC
T ss_pred EECCCCccccccHhhhhhcccCcEEEcc
Confidence 77776433211 2445566 7777774
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.98 E-value=1.1e-11 Score=118.05 Aligned_cols=216 Identities=13% Similarity=0.046 Sum_probs=105.8
Q ss_pred CCeEEEEEEcceeeeCCC-CcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCc
Q 012562 122 NVQVFDLTVYGEVTELPH-CLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR 197 (461)
Q Consensus 122 ~l~~L~l~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp 197 (461)
.++.|+++... ...+|. .+..+++|++|+|++| .+.. ..+..+++|++|+|.++.++.- .. ...+
T Consensus 53 ~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n-----~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l---~~--~~~~ 121 (330)
T 1xku_A 53 DTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINN-----KISKISPGAFAPLVKLERLYLSKNQLKEL---PE--KMPK 121 (330)
T ss_dssp TCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSS-----CCCCBCTTTTTTCTTCCEEECCSSCCSBC---CS--SCCT
T ss_pred CCeEEECCCCc-CCEeChhhhccCCCCCEEECCCC-----cCCeeCHHHhcCCCCCCEEECCCCcCCcc---Ch--hhcc
Confidence 45666664433 222333 3445666666666666 3333 2345566666666666655421 10 1125
Q ss_pred cccceEEeeeecCCceEEEEe-cCCcCeEEEeccCCCCCCCeE-EEEecCCeeeEEEecCCCCceeeeCCCCceEEEEEE
Q 012562 198 LLEKLILKSCSFRDFKILDIS-STSLKSLTLDNFGGDESGNYK-VKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFF 275 (461)
Q Consensus 198 ~Le~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~ 275 (461)
.|++|++++|.+.+.....+. .++|+.|.+..+.+...+... ..-.+++|++|.++++........-.++|+.+++..
T Consensus 122 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~ 201 (330)
T 1xku_A 122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDG 201 (330)
T ss_dssp TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTT
T ss_pred cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCC
Confidence 666666666543322111111 256666666665531100000 011356677777766444333222235666666622
Q ss_pred EeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCC
Q 012562 276 DIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSP 355 (461)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p 355 (461)
+.. ... ....+..+++|+.|++++|.+..+. ...+. .+++|++|+++.+... .++. .+..++
T Consensus 202 n~l--~~~-------~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~-~l~~L~~L~L~~N~l~--~lp~--~l~~l~ 263 (330)
T 1xku_A 202 NKI--TKV-------DAASLKGLNNLAKLGLSFNSISAVD----NGSLA-NTPHLRELHLNNNKLV--KVPG--GLADHK 263 (330)
T ss_dssp SCC--CEE-------CTGGGTTCTTCCEEECCSSCCCEEC----TTTGG-GSTTCCEEECCSSCCS--SCCT--TTTTCS
T ss_pred CcC--Ccc-------CHHHhcCCCCCCEEECCCCcCceeC----hhhcc-CCCCCCEEECCCCcCc--cCCh--hhccCC
Confidence 111 000 1123445677777777777654322 11233 4557777777665432 1121 345677
Q ss_pred CcceEEEEecc
Q 012562 356 NLEALTIYFEG 366 (461)
Q Consensus 356 ~L~~L~l~~~~ 366 (461)
+|+.|++..+.
T Consensus 264 ~L~~L~l~~N~ 274 (330)
T 1xku_A 264 YIQVVYLHNNN 274 (330)
T ss_dssp SCCEEECCSSC
T ss_pred CcCEEECCCCc
Confidence 77777777654
No 43
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.97 E-value=1e-10 Score=125.42 Aligned_cols=83 Identities=19% Similarity=0.139 Sum_probs=51.3
Q ss_pred cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC--C---CccccCcccEEEeeeEEEcChhhHHHHhhc
Q 012562 121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL--P---FSVGFSRLKSLDLHNVEFLDHNLLHKFVSS 195 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~--~---~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~ 195 (461)
+++++|+|+.+......|..+..+++|++|+|++| .+.. + .+..+++|++|+|+++.+.+. .....+.+
T Consensus 73 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n-----~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~-~~~~~~~~ 146 (844)
T 3j0a_A 73 PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC-----GLSDAVLKDGYFRNLKALTRLDLSKNQIRSL-YLHPSFGK 146 (844)
T ss_dssp TTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC-----CCSSCCSTTCCCSSCSSCCEEEEESCCCCCC-CCCGGGGT
T ss_pred CCCCEEECCCCcCcccCHhHccCCcccCEeeCcCC-----CCCcccccCccccccCCCCEEECCCCccccc-ccchhHhh
Confidence 35677777554434444666666777777777777 4432 1 255677777777777766543 23334666
Q ss_pred CccccceEEeeeec
Q 012562 196 RRLLEKLILKSCSF 209 (461)
Q Consensus 196 cp~Le~L~L~~c~~ 209 (461)
+++|+.|+|++|.+
T Consensus 147 L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 147 LNSLKSIDFSSNQI 160 (844)
T ss_dssp CSSCCEEEEESSCC
T ss_pred CCCCCEEECCCCcC
Confidence 77777777777654
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.97 E-value=1.7e-12 Score=129.43 Aligned_cols=313 Identities=16% Similarity=0.100 Sum_probs=175.3
Q ss_pred cccEEEEEEeccCCchhHHHHHHHHHh--cCCeEEEEEEccee----eeCCCCcccCCCccEEEeceeccccccccC--C
Q 012562 94 SIQRFRLYCLSYANDYTVYRWVCAVAR--RNVQVFDLTVYGEV----TELPHCLVTCESLEALKLACRQLRMCVLKL--P 165 (461)
Q Consensus 94 ~i~~l~l~~~~~~~~~~~~~wi~~~~~--~~l~~L~l~~~~~~----~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~--~ 165 (461)
.++.+.++.... .+..+..+...... .++++|+++..... ..+|..+..+++|++|+|++| .+.. +
T Consensus 57 ~L~~L~Ls~n~l-~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-----~i~~~~~ 130 (461)
T 1z7x_W 57 ALAELNLRSNEL-GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN-----LLGDAGL 130 (461)
T ss_dssp TCCEEECTTCCC-HHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS-----BCHHHHH
T ss_pred CcCEEeCCCCcC-ChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCC-----cCchHHH
Confidence 588777765431 11122222221111 15889988544322 245666777899999999999 4433 1
Q ss_pred -C-----ccccCcccEEEeeeEEEcCh--hhHHHHhhcCccccceEEeeeecCCceEEEE------ecCCcCeEEEeccC
Q 012562 166 -F-----SVGFSRLKSLDLHNVEFLDH--NLLHKFVSSRRLLEKLILKSCSFRDFKILDI------SSTSLKSLTLDNFG 231 (461)
Q Consensus 166 -~-----~~~l~~L~~L~L~~~~~~~~--~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i------~~~~L~~L~l~~~~ 231 (461)
. ....++|++|+|.++.+++. ..+...+..++.|++|++++|.+.+.....+ ..++|++|.+.+|.
T Consensus 131 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 210 (461)
T 1z7x_W 131 QLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG 210 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC
Confidence 0 12356799999999988775 2345667789999999999986432211111 12489999999887
Q ss_pred CCCCCC--eE-EEEecCCeeeEEEecCCCCcee--------eeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCC
Q 012562 232 GDESGN--YK-VKIACPNLVSFNFLASWAPDFA--------FEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCE 300 (461)
Q Consensus 232 ~~~~~~--~~-~~~~~p~L~~L~l~~~~~~~~~--------~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~ 300 (461)
+.+.+. +. ..-.+++|++|+++++...... ...+++|+.+++..+.. .......+...+..+++
T Consensus 211 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l-----~~~~~~~l~~~l~~~~~ 285 (461)
T 1z7x_W 211 VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI-----TAKGCGDLCRVLRAKES 285 (461)
T ss_dssp CBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC-----CHHHHHHHHHHHHHCTT
T ss_pred CcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCC-----CHHHHHHHHHHHhhCCC
Confidence 521110 11 1115689999999886443221 12478899888843211 11112235666777899
Q ss_pred ccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcch-hhHhhhhccCCCcceEEEEeccCCCccccccCcCc
Q 012562 301 VKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVV-PSIISLLNCSPNLEALTIYFEGEDCDDWKISNKSI 379 (461)
Q Consensus 301 l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~-l~~~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~ 379 (461)
|+.|++++|.+...........+....++|++|++..|...... ......+..+++|+.|++..+.-..... ... .
T Consensus 286 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~--~~l-~ 362 (461)
T 1z7x_W 286 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV--REL-C 362 (461)
T ss_dssp CCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH--HHH-H
T ss_pred cceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccH--HHH-H
Confidence 99999998875432111111111112358888888777553222 1122266788899988887764210000 000 0
Q ss_pred cc---cccceeEEEEEeecCChhHHHHHHHHHhcCcCcceEEEE
Q 012562 380 FC---LTCHLKTVELIHVAGDENELELVRFLLKNGHVLKKLSFS 420 (461)
Q Consensus 380 ~~---~~~~Lk~v~i~~~~g~~~e~~~~~~ll~~a~~Le~~~i~ 420 (461)
.. ..++|+++.+.+-.-.......+...+.+.+.|+.+.+.
T Consensus 363 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~ 406 (461)
T 1z7x_W 363 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLS 406 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECC
T ss_pred HHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECC
Confidence 10 124666666653322322333333445667777777666
No 45
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.97 E-value=1.5e-10 Score=115.00 Aligned_cols=134 Identities=11% Similarity=0.027 Sum_probs=61.8
Q ss_pred cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccCCCccccCcccEEEeeeEEEcChhhHHHHhhcCcccc
Q 012562 121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLE 200 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le 200 (461)
+++++|+++... ...+| .+..+++|++|+|++| .+....+..+++|++|+|.++.+++- . +.+++.|+
T Consensus 42 ~~L~~L~Ls~n~-l~~~~-~l~~l~~L~~L~Ls~n-----~l~~~~~~~l~~L~~L~Ls~N~l~~~-~----~~~l~~L~ 109 (457)
T 3bz5_A 42 ATLTSLDCHNSS-ITDMT-GIEKLTGLTKLICTSN-----NITTLDLSQNTNLTYLACDSNKLTNL-D----VTPLTKLT 109 (457)
T ss_dssp TTCCEEECCSSC-CCCCT-TGGGCTTCSEEECCSS-----CCSCCCCTTCTTCSEEECCSSCCSCC-C----CTTCTTCC
T ss_pred CCCCEEEccCCC-cccCh-hhcccCCCCEEEccCC-----cCCeEccccCCCCCEEECcCCCCcee-e----cCCCCcCC
Confidence 355556554332 11233 3445566666666666 43332244555666666665555442 1 44556666
Q ss_pred ceEEeeeecCCceEEEEe-cCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecC-CCCceeeeCCCCceEEEE
Q 012562 201 KLILKSCSFRDFKILDIS-STSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLAS-WAPDFAFEDLDSLQNAFI 273 (461)
Q Consensus 201 ~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~-~~~~~~~~~~~~L~~l~l 273 (461)
.|++++|.+.++. +. .++|++|.+..|.+.+ +. .-.+++|++|.++++ ......+..+++|+.+++
T Consensus 110 ~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~---l~-l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l 177 (457)
T 3bz5_A 110 YLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTE---ID-VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDC 177 (457)
T ss_dssp EEECCSSCCSCCC---CTTCTTCCEEECTTSCCSC---CC-CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEEC
T ss_pred EEECCCCcCCeec---CCCCCcCCEEECCCCccce---ec-cccCCcCCEEECCCCCcccccccccCCcCCEEEC
Confidence 6666655443321 21 2455555555554311 11 013444555555443 122223344444554444
No 46
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.97 E-value=7.3e-11 Score=111.10 Aligned_cols=137 Identities=15% Similarity=0.142 Sum_probs=84.3
Q ss_pred cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccc
Q 012562 121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLL 199 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~L 199 (461)
+++++|++.... ...+| .+..+++|++|+|++| .+.. +.+..+++|++|+|.++.+.+- . .+..++.|
T Consensus 41 ~~L~~L~l~~~~-i~~l~-~~~~l~~L~~L~L~~n-----~i~~~~~~~~l~~L~~L~L~~n~l~~~---~-~~~~l~~L 109 (308)
T 1h6u_A 41 DGITTLSAFGTG-VTTIE-GVQYLNNLIGLELKDN-----QITDLAPLKNLTKITELELSGNPLKNV---S-AIAGLQSI 109 (308)
T ss_dssp HTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSS-----CCCCCGGGTTCCSCCEEECCSCCCSCC---G-GGTTCTTC
T ss_pred CCcCEEEeeCCC-ccCch-hhhccCCCCEEEccCC-----cCCCChhHccCCCCCEEEccCCcCCCc---h-hhcCCCCC
Confidence 478888874432 22344 4666888888888888 5555 3367788888888888887654 2 36678888
Q ss_pred cceEEeeeecCCceEEEEe-cCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCcee-eeCCCCceEEEE
Q 012562 200 EKLILKSCSFRDFKILDIS-STSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFA-FEDLDSLQNAFI 273 (461)
Q Consensus 200 e~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~-~~~~~~L~~l~l 273 (461)
+.|++++|.+.+... +. .++|++|.+.+|.+.+... .-.+++|++|.++++...... +..+++|+.+++
T Consensus 110 ~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l 180 (308)
T 1h6u_A 110 KTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKA 180 (308)
T ss_dssp CEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred CEEECCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc---ccCCCCccEEEccCCcCCCChhhcCCCCCCEEEC
Confidence 888888887554332 11 3677777777766421111 114567777777664433221 334444444444
No 47
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.96 E-value=5.3e-11 Score=126.53 Aligned_cols=147 Identities=10% Similarity=0.034 Sum_probs=97.7
Q ss_pred cCCeEEEEEEcceee-----------------eCCCCcc--cCCCccEEEeceeccccccccC--C-CccccCcccEEEe
Q 012562 121 RNVQVFDLTVYGEVT-----------------ELPHCLV--TCESLEALKLACRQLRMCVLKL--P-FSVGFSRLKSLDL 178 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~-----------------~lp~~l~--~~~~L~~L~L~~~~~~~~~l~~--~-~~~~l~~L~~L~L 178 (461)
+++++|+|+.+.... .+|..+. .+++|++|+|++| .+.. | .+..+++|++|+|
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N-----~l~~~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC-----PNMTQLPDFLYDLPELQSLNI 522 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESC-----TTCCSCCGGGGGCSSCCEEEC
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCC-----CCCccChHHHhCCCCCCEEEC
Confidence 578999997665443 3899887 8999999999999 5433 4 5678999999999
Q ss_pred eeEE-EcCh---hhHHHH---hhcCccccceEEeeeecCCceEE-EE-ecCCcCeEEEeccCCCCCCCeEEEEecCCeee
Q 012562 179 HNVE-FLDH---NLLHKF---VSSRRLLEKLILKSCSFRDFKIL-DI-SSTSLKSLTLDNFGGDESGNYKVKIACPNLVS 249 (461)
Q Consensus 179 ~~~~-~~~~---~~l~~l---~~~cp~Le~L~L~~c~~~~~~~~-~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~ 249 (461)
.++. +++. ..+..+ +..+|+|+.|+|++|.+..+... .+ ..++|+.|.+.+|.+. .+...-.+++|+.
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~---~lp~~~~L~~L~~ 599 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR---HLEAFGTNVKLTD 599 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC---BCCCCCTTSEESE
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc---cchhhcCCCcceE
Confidence 9987 6541 123222 24567999999999865422110 12 2377888888888752 3331125678888
Q ss_pred EEEecCCCCce--eeeCCCC-ceEEEEEE
Q 012562 250 FNFLASWAPDF--AFEDLDS-LQNAFIFF 275 (461)
Q Consensus 250 L~l~~~~~~~~--~~~~~~~-L~~l~l~~ 275 (461)
|.++++....+ .+..+++ |+.+++..
T Consensus 600 L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~ 628 (876)
T 4ecn_A 600 LKLDYNQIEEIPEDFCAFTDQVEGLGFSH 628 (876)
T ss_dssp EECCSSCCSCCCTTSCEECTTCCEEECCS
T ss_pred EECcCCccccchHHHhhccccCCEEECcC
Confidence 88887554322 2455666 88777743
No 48
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.96 E-value=4e-11 Score=120.27 Aligned_cols=189 Identities=15% Similarity=0.087 Sum_probs=134.4
Q ss_pred cCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEec
Q 012562 143 TCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDISS 219 (461)
Q Consensus 143 ~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~ 219 (461)
.+++|++|+|++| .+.. ..+..+++|++|+|++|.+++. .. +.++++|+.|+|++|.+.++. ..
T Consensus 32 ~~~~L~~L~Ls~n-----~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~--l~~l~~L~~L~Ls~N~l~~l~----~~ 98 (487)
T 3oja_A 32 SAWNVKELDLSGN-----PLSQISAADLAPFTKLELLNLSSNVLYET--LD--LESLSTLRTLDLNNNYVQELL----VG 98 (487)
T ss_dssp TGGGCCEEECCSS-----CCCCCCGGGGTTCTTCCEEECTTSCCEEE--EE--CTTCTTCCEEECCSSEEEEEE----EC
T ss_pred cCCCccEEEeeCC-----cCCCCCHHHHhCCCCCCEEEeeCCCCCCC--cc--cccCCCCCEEEecCCcCCCCC----CC
Confidence 3558999999999 6655 2567899999999999988754 12 788999999999998654322 24
Q ss_pred CCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCce---eeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHh
Q 012562 220 TSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDF---AFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLN 296 (461)
Q Consensus 220 ~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~ 296 (461)
++|+.|.+.+|.+ .... ....++|++|.++++..... .+..+++|+.++++.+... .. ....+..
T Consensus 99 ~~L~~L~L~~N~l---~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~------~~~~l~~ 166 (487)
T 3oja_A 99 PSIETLHAANNNI---SRVS-CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID--TV------NFAELAA 166 (487)
T ss_dssp TTCCEEECCSSCC---CCEE-ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCC--EE------EGGGGGG
T ss_pred CCcCEEECcCCcC---CCCC-ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCC--Cc------ChHHHhh
Confidence 8999999999885 2222 22568999999999665433 4567899999998433210 00 0122334
Q ss_pred cCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEeccC
Q 012562 297 ELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEGE 367 (461)
Q Consensus 297 ~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~~~ 367 (461)
.+++|+.|++++|.+..+.. .. .+++|+.|+++.+....- +. -+..+++|+.|++..+.-
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~~------~~-~l~~L~~L~Ls~N~l~~~--~~--~~~~l~~L~~L~Ls~N~l 226 (487)
T 3oja_A 167 SSDTLEHLNLQYNFIYDVKG------QV-VFAKLKTLDLSSNKLAFM--GP--EFQSAAGVTWISLRNNKL 226 (487)
T ss_dssp GTTTCCEEECTTSCCCEEEC------CC-CCTTCCEEECCSSCCCEE--CG--GGGGGTTCSEEECTTSCC
T ss_pred hCCcccEEecCCCccccccc------cc-cCCCCCEEECCCCCCCCC--CH--hHcCCCCccEEEecCCcC
Confidence 68999999999998664321 22 466999999987765321 11 246789999999988653
No 49
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.96 E-value=2.9e-11 Score=114.43 Aligned_cols=103 Identities=12% Similarity=0.020 Sum_probs=56.6
Q ss_pred hcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEeccCCCcccccc
Q 012562 296 NELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEGEDCDDWKIS 375 (461)
Q Consensus 296 ~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~~~~~~~~~~~ 375 (461)
..+++++.|++++|.+..+.. .. .+++|++|+++.+....- +. -+..+++|+.|++..+.-.
T Consensus 166 ~~l~~L~~L~L~~N~l~~~~~------~~-~l~~L~~L~Ls~N~l~~l--~~--~~~~l~~L~~L~L~~N~l~------- 227 (317)
T 3o53_A 166 ASSDTLEHLNLQYNFIYDVKG------QV-VFAKLKTLDLSSNKLAFM--GP--EFQSAAGVTWISLRNNKLV------- 227 (317)
T ss_dssp GGTTTCCEEECTTSCCCEEEC------CC-CCTTCCEEECCSSCCCEE--CG--GGGGGTTCSEEECTTSCCC-------
T ss_pred hccCcCCEEECCCCcCccccc------cc-ccccCCEEECCCCcCCcc--hh--hhcccCcccEEECcCCccc-------
Confidence 457888888888887654321 11 356888888877654221 11 2456788888888776531
Q ss_pred CcCcc--ccccceeEEEEEeecCChhHHHHHHHHHhcCcCcceEEEE
Q 012562 376 NKSIF--CLTCHLKTVELIHVAGDENELELVRFLLKNGHVLKKLSFS 420 (461)
Q Consensus 376 ~~~~~--~~~~~Lk~v~i~~~~g~~~e~~~~~~ll~~a~~Le~~~i~ 420 (461)
.+ +. ...++|+.+.+.+-.-.. ..+...+...+.|+.+.+.
T Consensus 228 ~l-~~~~~~l~~L~~L~l~~N~~~~---~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 228 LI-EKALRFSQNLEHFDLRGNGFHC---GTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp EE-CTTCCCCTTCCEEECTTCCCBH---HHHHHHHHTCHHHHHHHHH
T ss_pred ch-hhHhhcCCCCCEEEccCCCccC---cCHHHHHhccccceEEECC
Confidence 11 11 123556666555322221 1223344556666655444
No 50
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.96 E-value=9.6e-10 Score=117.93 Aligned_cols=104 Identities=15% Similarity=0.089 Sum_probs=54.4
Q ss_pred cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCc
Q 012562 121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR 197 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp 197 (461)
.++++|+++.+......|..+..+++|+.|+|++| .+.. ..+..+++|++|+|.++.+++. ....+.++|
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-----~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~ 338 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN-----KINKIADEAFYGLDNLQVLNLSYNLLGEL--YSSNFYGLP 338 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESC-----CCCEECTTTTTTCSSCCEEEEESCCCSCC--CSCSCSSCT
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCC-----cCCCCChHHhcCCCCCCEEECCCCCCCcc--CHHHhcCCC
Confidence 35666666443322333444445667777777766 3322 2345566677777766655431 222345666
Q ss_pred cccceEEeeeecCCceEEEEe-cCCcCeEEEeccC
Q 012562 198 LLEKLILKSCSFRDFKILDIS-STSLKSLTLDNFG 231 (461)
Q Consensus 198 ~Le~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~ 231 (461)
.|+.|++++|.+..+..-.+. .++|+.|.+.+|.
T Consensus 339 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp TCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred CCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC
Confidence 666666666654332211111 2556666666555
No 51
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.96 E-value=5.2e-12 Score=131.14 Aligned_cols=178 Identities=10% Similarity=0.107 Sum_probs=86.0
Q ss_pred ccccCcccEEEeeeEEEcCh---------------hhHHHHhh--cCccccceEEeeeecCCceEEEEe-cCCcCeEEEe
Q 012562 167 SVGFSRLKSLDLHNVEFLDH---------------NLLHKFVS--SRRLLEKLILKSCSFRDFKILDIS-STSLKSLTLD 228 (461)
Q Consensus 167 ~~~l~~L~~L~L~~~~~~~~---------------~~l~~l~~--~cp~Le~L~L~~c~~~~~~~~~i~-~~~L~~L~l~ 228 (461)
+..+++|++|+|.++.+++. +.+...+. ++++|+.|+|++|.+.+..+-.+. .++|+.|.+.
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 44567777777777766541 00344444 677777777777654332221111 2567777777
Q ss_pred ccC-CCCCC-CeEEEE-e------cCCeeeEEEecCCCCce----eeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHH
Q 012562 229 NFG-GDESG-NYKVKI-A------CPNLVSFNFLASWAPDF----AFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLL 295 (461)
Q Consensus 229 ~~~-~~~~~-~~~~~~-~------~p~L~~L~l~~~~~~~~----~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l 295 (461)
.|. + .+ .+...+ . +++|++|.++++....+ .+..+++|+.+++..+... ..+. .+
T Consensus 282 ~n~~l--~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~---------g~ip-~~ 349 (636)
T 4eco_A 282 CNRGI--SGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE---------GKLP-AF 349 (636)
T ss_dssp TCTTS--CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCE---------EECC-CC
T ss_pred CCCCC--ccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCc---------cchh-hh
Confidence 665 3 11 111111 1 26677777766443322 3455666666666322110 0011 22
Q ss_pred hcCCCccEEEEecchhhhhccccccccCCcccCc-ccEEEEEEeCCCcchhhHhhhhcc--CCCcceEEEEecc
Q 012562 296 NELCEVKALKLSTAFLRFHFVLEERGFIPNSFNY-LKSLVLSVSMADWVVPSIISLLNC--SPNLEALTIYFEG 366 (461)
Q Consensus 296 ~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~-L~~L~l~~~~~~~~~l~~~~lL~~--~p~L~~L~l~~~~ 366 (461)
..+++|+.|++++|.+..+ +..+. .+++ |++|+++.+... . ++. .+.. +++|+.|++..+.
T Consensus 350 ~~l~~L~~L~L~~N~l~~l-----p~~l~-~l~~~L~~L~Ls~N~l~-~-lp~--~~~~~~l~~L~~L~Ls~N~ 413 (636)
T 4eco_A 350 GSEIKLASLNLAYNQITEI-----PANFC-GFTEQVENLSFAHNKLK-Y-IPN--IFDAKSVSVMSAIDFSYNE 413 (636)
T ss_dssp EEEEEESEEECCSSEEEEC-----CTTSE-EECTTCCEEECCSSCCS-S-CCS--CCCTTCSSCEEEEECCSSC
T ss_pred CCCCCCCEEECCCCccccc-----cHhhh-hhcccCcEEEccCCcCc-c-cch--hhhhcccCccCEEECcCCc
Confidence 3455666666666654411 12222 4445 666666555432 1 111 1222 2356666665543
No 52
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.94 E-value=1.4e-12 Score=130.23 Aligned_cols=310 Identities=17% Similarity=0.110 Sum_probs=142.1
Q ss_pred cccEEEEEEeccCCchhHHHHHHHHH--hcCCeEEEEEEcceee----eCCCCcc-cCCCccEEEeceeccccccccC--
Q 012562 94 SIQRFRLYCLSYANDYTVYRWVCAVA--RRNVQVFDLTVYGEVT----ELPHCLV-TCESLEALKLACRQLRMCVLKL-- 164 (461)
Q Consensus 94 ~i~~l~l~~~~~~~~~~~~~wi~~~~--~~~l~~L~l~~~~~~~----~lp~~l~-~~~~L~~L~L~~~~~~~~~l~~-- 164 (461)
.++.+.++.....+ ..+.. +..+. .+++++|+++.+.... .+...+. ..++|++|+|++| .+..
T Consensus 86 ~L~~L~L~~n~i~~-~~~~~-l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-----~l~~~~ 158 (461)
T 1z7x_W 86 KIQKLSLQNCCLTG-AGCGV-LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-----SLSAAS 158 (461)
T ss_dssp CCCEEECTTSCCBG-GGHHH-HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-----CCBGGG
T ss_pred ceeEEEccCCCCCH-HHHHH-HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-----CCCHHH
Confidence 47777776554221 11111 11111 2467777775432111 1111111 1346777777777 3332
Q ss_pred -----CCccccCcccEEEeeeEEEcChhhHHHHhh----cCccccceEEeeeecCCceEEEE-----ecCCcCeEEEecc
Q 012562 165 -----PFSVGFSRLKSLDLHNVEFLDHNLLHKFVS----SRRLLEKLILKSCSFRDFKILDI-----SSTSLKSLTLDNF 230 (461)
Q Consensus 165 -----~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~----~cp~Le~L~L~~c~~~~~~~~~i-----~~~~L~~L~l~~~ 230 (461)
..+..+++|++|+|.++.+++. ....+.. ..+.|+.|++++|.+.+.....+ ..++|++|.+..|
T Consensus 159 ~~~l~~~l~~~~~L~~L~L~~n~i~~~-~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 159 CEPLASVLRAKPDFKELTVSNNDINEA-GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHH-HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHHHhhCCCCCEEECcCCCcchH-HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC
Confidence 1233467777777777776654 3443333 34577777777775433210001 2367777777766
Q ss_pred CCCCCCC--e-E-EEEecCCeeeEEEecCCCCce-------eeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHh-cC
Q 012562 231 GGDESGN--Y-K-VKIACPNLVSFNFLASWAPDF-------AFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLN-EL 298 (461)
Q Consensus 231 ~~~~~~~--~-~-~~~~~p~L~~L~l~~~~~~~~-------~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~-~l 298 (461)
.+.+.+. + . +.-..++|++|.++++..... .+..+++|++++++.+.. .......+...+. ..
T Consensus 238 ~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i-----~~~~~~~l~~~l~~~~ 312 (461)
T 1z7x_W 238 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL-----GDEGARLLCETLLEPG 312 (461)
T ss_dssp BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC-----HHHHHHHHHHHHTSTT
T ss_pred cCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC-----chHHHHHHHHHhccCC
Confidence 5311000 0 0 001256777777776544331 133467777777732211 0000111222221 22
Q ss_pred CCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhH-hhhhc-cCCCcceEEEEeccCCCccccccC
Q 012562 299 CEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSI-ISLLN-CSPNLEALTIYFEGEDCDDWKISN 376 (461)
Q Consensus 299 ~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~-~~lL~-~~p~L~~L~l~~~~~~~~~~~~~~ 376 (461)
++++.|++++|.+...........+. .+++|++|+++.+......... ...+. .+++|+.|++..+.-..... ..
T Consensus 313 ~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~--~~ 389 (461)
T 1z7x_W 313 CQLESLWVKSCSFTAACCSHFSSVLA-QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSC--SS 389 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHH-HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH--HH
T ss_pred ccceeeEcCCCCCchHHHHHHHHHHh-hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhH--HH
Confidence 57777777777644221111112222 3457777777666443222221 11222 26677777776654210000 01
Q ss_pred cCccc--cccceeEEEEEeecCC-hhHHHHHHHHHhcCcCcceEEEE
Q 012562 377 KSIFC--LTCHLKTVELIHVAGD-ENELELVRFLLKNGHVLKKLSFS 420 (461)
Q Consensus 377 ~~~~~--~~~~Lk~v~i~~~~g~-~~e~~~~~~ll~~a~~Le~~~i~ 420 (461)
. +.. ..++|+++.+.+-.-. .+...+++.+-+....|+++.+.
T Consensus 390 l-~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~ 435 (461)
T 1z7x_W 390 L-AATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLY 435 (461)
T ss_dssp H-HHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred H-HHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeec
Confidence 1 111 2356666666532211 22234444443445567777665
No 53
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.93 E-value=2.1e-11 Score=116.21 Aligned_cols=14 Identities=7% Similarity=-0.112 Sum_probs=7.3
Q ss_pred ccCCCcceEEEEec
Q 012562 352 NCSPNLEALTIYFE 365 (461)
Q Consensus 352 ~~~p~L~~L~l~~~ 365 (461)
..+++|+.|++..+
T Consensus 261 ~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 261 PDLKLLQVVYLHTN 274 (332)
T ss_dssp GGCTTCCEEECCSS
T ss_pred hcCccCCEEECCCC
Confidence 44555555555544
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.93 E-value=4.2e-11 Score=113.27 Aligned_cols=222 Identities=18% Similarity=0.102 Sum_probs=131.7
Q ss_pred hhHHHHHHHHH--hcCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcC
Q 012562 109 YTVYRWVCAVA--RRNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLD 185 (461)
Q Consensus 109 ~~~~~wi~~~~--~~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~ 185 (461)
..+...+.... .+++++|+++.+......|..+..+++|++|+|++| .+.. +.+..+++|++|+|.++.+++
T Consensus 20 ~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-----~l~~~~~~~~l~~L~~L~Ls~n~l~~ 94 (317)
T 3o53_A 20 SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-----VLYETLDLESLSTLRTLDLNNNYVQE 94 (317)
T ss_dssp TTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-----CCEEEEEETTCTTCCEEECCSSEEEE
T ss_pred cchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-----cCCcchhhhhcCCCCEEECcCCcccc
Confidence 34444444333 246888888655422222344556888999999888 5443 336778889999998888765
Q ss_pred hhhHHHHhhcCccccceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEEE-ecCCeeeEEEecCCCCceee--
Q 012562 186 HNLLHKFVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKI-ACPNLVSFNFLASWAPDFAF-- 262 (461)
Q Consensus 186 ~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~-~~p~L~~L~l~~~~~~~~~~-- 262 (461)
- ..++.|+.|++++|.+.+... ...++|++|.+.+|.+... ....+ ..++|++|+++++.......
T Consensus 95 l-------~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (317)
T 3o53_A 95 L-------LVGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITML--RDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (317)
T ss_dssp E-------EECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSG--GGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred c-------cCCCCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCc--cchhhhccCCCCEEECCCCCCCcccHHH
Confidence 2 245888888888876443221 1246788888887774211 11112 46788888888765544332
Q ss_pred --eCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCC
Q 012562 263 --EDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMA 340 (461)
Q Consensus 263 --~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 340 (461)
..+++|+.++++.+.. ...+. ...+++++.|++++|.+..+.. .+. .+++|++|+++.+..
T Consensus 164 ~~~~l~~L~~L~L~~N~l--~~~~~---------~~~l~~L~~L~Ls~N~l~~l~~-----~~~-~l~~L~~L~L~~N~l 226 (317)
T 3o53_A 164 LAASSDTLEHLNLQYNFI--YDVKG---------QVVFAKLKTLDLSSNKLAFMGP-----EFQ-SAAGVTWISLRNNKL 226 (317)
T ss_dssp GGGGTTTCCEEECTTSCC--CEEEC---------CCCCTTCCEEECCSSCCCEECG-----GGG-GGTTCSEEECTTSCC
T ss_pred HhhccCcCCEEECCCCcC--ccccc---------ccccccCCEEECCCCcCCcchh-----hhc-ccCcccEEECcCCcc
Confidence 3467788887732211 00000 1136778888888776653321 122 456788887766543
Q ss_pred CcchhhHhhhhccCCCcceEEEEeccC
Q 012562 341 DWVVPSIISLLNCSPNLEALTIYFEGE 367 (461)
Q Consensus 341 ~~~~l~~~~lL~~~p~L~~L~l~~~~~ 367 (461)
.. ++. .+..+++|+.|++..+..
T Consensus 227 ~~--l~~--~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 227 VL--IEK--ALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp CE--ECT--TCCCCTTCCEEECTTCCC
T ss_pred cc--hhh--HhhcCCCCCEEEccCCCc
Confidence 21 222 346677888887776653
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.93 E-value=2.1e-12 Score=121.56 Aligned_cols=223 Identities=16% Similarity=0.099 Sum_probs=116.3
Q ss_pred CCeEEEEEEcceeeeCCCCc-ccCCCccEEEeceeccccccccCCCccccCcccEEEeeeEEEcChhhHHHHhhcCcccc
Q 012562 122 NVQVFDLTVYGEVTELPHCL-VTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLE 200 (461)
Q Consensus 122 ~l~~L~l~~~~~~~~lp~~l-~~~~~L~~L~L~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le 200 (461)
++++|++.... ...+|..+ ..+++|++|+|+++.+............+++|++|+|.++.+..- ...+.++++|+
T Consensus 29 ~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l---~~~~~~l~~L~ 104 (306)
T 2z66_A 29 SATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM---SSNFLGLEQLE 104 (306)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEE---EEEEETCTTCC
T ss_pred CCCEEECCCCc-cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccC---hhhcCCCCCCC
Confidence 56666664443 23555553 346777777777772211000012233567777777776655421 12245667777
Q ss_pred ceEEeeeecCCceEE-EE-ecCCcCeEEEeccCCCCCCCeE-EEEecCCeeeEEEecCCCCc----eeeeCCCCceEEEE
Q 012562 201 KLILKSCSFRDFKIL-DI-SSTSLKSLTLDNFGGDESGNYK-VKIACPNLVSFNFLASWAPD----FAFEDLDSLQNAFI 273 (461)
Q Consensus 201 ~L~L~~c~~~~~~~~-~i-~~~~L~~L~l~~~~~~~~~~~~-~~~~~p~L~~L~l~~~~~~~----~~~~~~~~L~~l~l 273 (461)
.|++++|.+.+.... .+ ..++|+.|.+.++.+. +... ..-.+++|++|.++++.... ..+..+++|+.+++
T Consensus 105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L 182 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR--VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182 (306)
T ss_dssp EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE--ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred EEECCCCcccccccchhhhhccCCCEEECCCCcCC--ccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEEC
Confidence 777776653222110 01 1256777777665531 0000 00135677777777643322 23456677777777
Q ss_pred EEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhcc
Q 012562 274 FFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNC 353 (461)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~ 353 (461)
+.+.. ... ....+..+++|+.|++++|.+..+.. ..+. .+++|++|+++.+........ .+..
T Consensus 183 s~n~l--~~~-------~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~-~l~~L~~L~L~~N~l~~~~~~---~~~~ 245 (306)
T 2z66_A 183 SQCQL--EQL-------SPTAFNSLSSLQVLNMSHNNFFSLDT----FPYK-CLNSLQVLDYSLNHIMTSKKQ---ELQH 245 (306)
T ss_dssp TTSCC--CEE-------CTTTTTTCTTCCEEECTTSCCSBCCS----GGGT-TCTTCCEEECTTSCCCBCSSS---SCCC
T ss_pred CCCCc--CCc-------CHHHhcCCCCCCEEECCCCccCccCh----hhcc-CcccCCEeECCCCCCcccCHH---HHHh
Confidence 32211 000 11234467788888888876553221 1223 556888888876654332222 3345
Q ss_pred CC-CcceEEEEeccC
Q 012562 354 SP-NLEALTIYFEGE 367 (461)
Q Consensus 354 ~p-~L~~L~l~~~~~ 367 (461)
+| +|+.|++.++..
T Consensus 246 ~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 246 FPSSLAFLNLTQNDF 260 (306)
T ss_dssp CCTTCCEEECTTCCE
T ss_pred hhccCCEEEccCCCe
Confidence 54 788888877654
No 56
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.92 E-value=2.7e-11 Score=117.94 Aligned_cols=92 Identities=17% Similarity=0.103 Sum_probs=59.5
Q ss_pred eCCCCcccCCCccEEEeceeccccccccC-------CCccccCcccEEEeeeEEEc---Ch-----hhHHHHhhcCcccc
Q 012562 136 ELPHCLVTCESLEALKLACRQLRMCVLKL-------PFSVGFSRLKSLDLHNVEFL---DH-----NLLHKFVSSRRLLE 200 (461)
Q Consensus 136 ~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-------~~~~~l~~L~~L~L~~~~~~---~~-----~~l~~l~~~cp~Le 200 (461)
.++..+..+++|++|+|++| .+.. ..+..+++|++|+|.++.+. +. ..+...+..+++|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n-----~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~ 97 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGN-----TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH 97 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTS-----EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCC
T ss_pred HHHHHHhcCCCccEEECCCC-----CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCccc
Confidence 34555556888999999998 4443 13456889999999886432 11 12333356889999
Q ss_pred ceEEeeeecCCceEE----E-EecCCcCeEEEeccCC
Q 012562 201 KLILKSCSFRDFKIL----D-ISSTSLKSLTLDNFGG 232 (461)
Q Consensus 201 ~L~L~~c~~~~~~~~----~-i~~~~L~~L~l~~~~~ 232 (461)
.|+|++|.+.+.... . ...++|++|.+.+|.+
T Consensus 98 ~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 98 TVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp EEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred EEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence 999999875442111 1 1247788888887764
No 57
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.91 E-value=9.4e-10 Score=112.13 Aligned_cols=113 Identities=19% Similarity=0.090 Sum_probs=72.9
Q ss_pred eeeCCCCcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecC
Q 012562 134 VTELPHCLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFR 210 (461)
Q Consensus 134 ~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~ 210 (461)
...+|..+. ++|++|+|+++ .+.. ..+..+++|++|+|.++.+++. ....+.++++|++|++++|.+.
T Consensus 17 l~~ip~~~~--~~L~~L~Ls~n-----~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~Ls~n~l~ 87 (549)
T 2z81_A 17 FTSIPSGLT--AAMKSLDLSFN-----KITYIGHGDLRACANLQVLILKSSRINTI--EGDAFYSLGSLEHLDLSDNHLS 87 (549)
T ss_dssp CSSCCSCCC--TTCCEEECCSS-----CCCEECSSTTSSCTTCCEEECTTSCCCEE--CTTTTTTCTTCCEEECTTSCCC
T ss_pred cccccccCC--CCccEEECcCC-----ccCccChhhhhcCCcccEEECCCCCcCcc--ChhhccccccCCEEECCCCccC
Confidence 345676554 68999999999 5443 3567899999999999887652 2344678999999999998755
Q ss_pred CceEEEEe-cCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecC
Q 012562 211 DFKILDIS-STSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLAS 255 (461)
Q Consensus 211 ~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~ 255 (461)
+...-.+. .++|++|.+.+|.+...+.....-.+++|++|+++++
T Consensus 88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n 133 (549)
T 2z81_A 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV 133 (549)
T ss_dssp SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEES
T ss_pred ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCC
Confidence 43221121 2667777777666421111111124566666666664
No 58
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.91 E-value=3.8e-11 Score=123.82 Aligned_cols=145 Identities=14% Similarity=0.097 Sum_probs=103.5
Q ss_pred cCCeEEEEEEcceeeeCCCCcc-cCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcC
Q 012562 121 RNVQVFDLTVYGEVTELPHCLV-TCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSR 196 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~c 196 (461)
.+++.+++.... ...+|..++ .+++|++|+|+++ .+.. ..+..+++|++|+|.++.+++- ....+.++
T Consensus 51 ~~l~~l~l~~~~-l~~lp~~~~~~l~~L~~L~L~~n-----~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l 122 (597)
T 3oja_B 51 NNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDL-----QIEEIDTYAFAYAHTIQKLYMGFNAIRYL--PPHVFQNV 122 (597)
T ss_dssp CCCSEEEESSCE-ESEECTHHHHHCCCCSEEECTTS-----CCCEECTTTTTTCTTCCEEECCSSCCCCC--CTTTTTTC
T ss_pred CCceEEEeeCCC-CCCcCHHHHccCCCCcEEECCCC-----CCCCCChHHhcCCCCCCEEECCCCcCCCC--CHHHHcCC
Confidence 567888874432 456777655 4899999999999 5544 3677899999999999988763 34457889
Q ss_pred ccccceEEeeeecCCceEEEE-ecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCceeeeCCCCceEEEEE
Q 012562 197 RLLEKLILKSCSFRDFKILDI-SSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIF 274 (461)
Q Consensus 197 p~Le~L~L~~c~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~l~l~ 274 (461)
++|+.|+|++|.+.++..-.+ ..++|++|.+.+|.+...... ..-.+++|++|.++++......+..+++|+.+++.
T Consensus 123 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~ 200 (597)
T 3oja_B 123 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVS 200 (597)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT-TTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECC
T ss_pred CCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChh-hhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcc
Confidence 999999999987554322111 237899999998875211110 11257899999999877666666777888887773
No 59
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.90 E-value=2.2e-10 Score=106.05 Aligned_cols=199 Identities=18% Similarity=0.107 Sum_probs=92.1
Q ss_pred CccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEE-ecCC
Q 012562 146 SLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDI-SSTS 221 (461)
Q Consensus 146 ~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i-~~~~ 221 (461)
+|++|+|+++ .+.. ..+..+++|++|+|.++.+.+- ....+.+++.|+.|++++|.+.+...-.+ ..++
T Consensus 29 ~l~~L~ls~n-----~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (276)
T 2z62_A 29 STKNLDLSFN-----PLRHLGSYSFFSFPELQVLDLSRCEIQTI--EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (276)
T ss_dssp TCCEEECTTC-----CCCEECTTTTTTCTTCSEEECTTCCCCEE--CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred CccEEECCCC-----cccccCHhHhccccCCcEEECCCCcCCcc--CHHHccCCcCCCEEECCCCccCccChhhhcCCcc
Confidence 4555665555 3322 1344555566666555544321 11224455556666655553221110000 1245
Q ss_pred cCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCc----eeeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhc
Q 012562 222 LKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPD----FAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNE 297 (461)
Q Consensus 222 L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~ 297 (461)
|++|.+..+.+....... .-.+++|++|.++++.... ..+..+++|+.+++..+.. ...+. . ...-+..
T Consensus 102 L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l--~~~~~---~-~~~~l~~ 174 (276)
T 2z62_A 102 LQKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI--QSIYC---T-DLRVLHQ 174 (276)
T ss_dssp CCEEECTTSCCCCSTTCC-CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC--CEECG---G-GGHHHHT
T ss_pred ccEEECCCCCccccCchh-cccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC--CcCCH---H-Hhhhhhh
Confidence 555555555431111110 1145667777776644332 1244556666666632211 00000 0 1112233
Q ss_pred CCCcc-EEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEeccC
Q 012562 298 LCEVK-ALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEGE 367 (461)
Q Consensus 298 l~~l~-~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~~~ 367 (461)
++.+. .|++++|.+..+... .+ ...+|++|+++.+....-. .. .+..+++|+.|++..+..
T Consensus 175 L~~l~l~L~ls~n~l~~~~~~----~~--~~~~L~~L~L~~n~l~~~~-~~--~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 175 MPLLNLSLDLSLNPMNFIQPG----AF--KEIRLKELALDTNQLKSVP-DG--IFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp CTTCCEEEECCSSCCCEECTT----SS--CSCCEEEEECCSSCCSCCC-TT--TTTTCCSCCEEECCSSCB
T ss_pred ccccceeeecCCCcccccCcc----cc--CCCcccEEECCCCceeecC-Hh--HhcccccccEEEccCCcc
Confidence 44444 677777765532211 11 2337888888666542211 22 456778888888877653
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.89 E-value=3.4e-09 Score=108.90 Aligned_cols=111 Identities=14% Similarity=0.015 Sum_probs=56.3
Q ss_pred CCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEeccCCCccccccCc
Q 012562 298 LCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEGEDCDDWKISNK 377 (461)
Q Consensus 298 l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~ 377 (461)
+++|+.|.+.+|.+.. +|..+++|+.|+++.|.... ++ ..+++|+.|++..+.- ..+
T Consensus 200 ~~~L~~L~L~~N~l~~---------l~~~~~~L~~L~Ls~N~L~~--lp-----~~l~~L~~L~Ls~N~L-------~~l 256 (622)
T 3g06_A 200 PSELYKLWAYNNRLTS---------LPALPSGLKELIVSGNRLTS--LP-----VLPSELKELMVSGNRL-------TSL 256 (622)
T ss_dssp CTTCCEEECCSSCCSS---------CCCCCTTCCEEECCSSCCSC--CC-----CCCTTCCEEECCSSCC-------SCC
T ss_pred cchhhEEECcCCcccc---------cCCCCCCCCEEEccCCccCc--CC-----CCCCcCcEEECCCCCC-------CcC
Confidence 3456666666554332 22133577777776553321 11 3457788887777543 123
Q ss_pred CccccccceeEEEEEeecCChhHHHHHHHHHhcCcCcceEEEEccCChhhHHHHHHHHhcC
Q 012562 378 SIFCLTCHLKTVELIHVAGDENELELVRFLLKNGHVLKKLSFSWMEDVENRKEIISRIMKL 438 (461)
Q Consensus 378 ~~~~~~~~Lk~v~i~~~~g~~~e~~~~~~ll~~a~~Le~~~i~~~~~~~~~~~~~~~l~~~ 438 (461)
+. ..++|+.+.+.+-.-. .+.. -+.+.+.|+.+.+....-.....+.+.++...
T Consensus 257 -p~-~~~~L~~L~Ls~N~L~----~lp~-~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~~ 310 (622)
T 3g06_A 257 -PM-LPSGLLSLSVYRNQLT----RLPE-SLIHLSSETTVNLEGNPLSERTLQALREITSA 310 (622)
T ss_dssp -CC-CCTTCCEEECCSSCCC----SCCG-GGGGSCTTCEEECCSCCCCHHHHHHHHHHHHS
T ss_pred -Cc-ccccCcEEeCCCCCCC----cCCH-HHhhccccCEEEecCCCCCCcCHHHHHhcccc
Confidence 22 4466777766532111 1111 24678888888877332112223345555443
No 61
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.88 E-value=7.7e-09 Score=105.74 Aligned_cols=82 Identities=21% Similarity=0.161 Sum_probs=46.1
Q ss_pred cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccc
Q 012562 121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLL 199 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~L 199 (461)
+++++|+++.+....-.|..+..+++|++|+|++| .+.. |.. .+++|++|+|.++.+.+- .+...+.+++.|
T Consensus 76 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-----~l~~lp~~-~l~~L~~L~Ls~N~l~~l-~~p~~~~~l~~L 148 (562)
T 3a79_B 76 SELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-----RLQNISCC-PMASLRHLDLSFNDFDVL-PVCKEFGNLTKL 148 (562)
T ss_dssp TTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-----CCCEECSC-CCTTCSEEECCSSCCSBC-CCCGGGGGCTTC
T ss_pred CCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-----cCCccCcc-ccccCCEEECCCCCcccc-CchHhhcccCcc
Confidence 45666666554433333444555667777777766 4333 322 566677777766665542 222335566666
Q ss_pred cceEEeeeec
Q 012562 200 EKLILKSCSF 209 (461)
Q Consensus 200 e~L~L~~c~~ 209 (461)
+.|++++|.+
T Consensus 149 ~~L~L~~n~l 158 (562)
T 3a79_B 149 TFLGLSAAKF 158 (562)
T ss_dssp CEEEEECSBC
T ss_pred cEEecCCCcc
Confidence 6666666653
No 62
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.87 E-value=2.8e-10 Score=107.13 Aligned_cols=187 Identities=17% Similarity=0.124 Sum_probs=114.7
Q ss_pred cCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEe-cC
Q 012562 143 TCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDIS-ST 220 (461)
Q Consensus 143 ~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~-~~ 220 (461)
.+++|++|+++++ .+.. +....+++|++|+|.++.+.+- .. +.+++.|+.|++++|.+.++. .+. .+
T Consensus 39 ~l~~L~~L~l~~~-----~i~~l~~~~~l~~L~~L~L~~n~i~~~---~~-~~~l~~L~~L~L~~n~l~~~~--~~~~l~ 107 (308)
T 1h6u_A 39 DLDGITTLSAFGT-----GVTTIEGVQYLNNLIGLELKDNQITDL---AP-LKNLTKITELELSGNPLKNVS--AIAGLQ 107 (308)
T ss_dssp HHHTCCEEECTTS-----CCCCCTTGGGCTTCCEEECCSSCCCCC---GG-GTTCCSCCEEECCSCCCSCCG--GGTTCT
T ss_pred HcCCcCEEEeeCC-----CccCchhhhccCCCCEEEccCCcCCCC---hh-HccCCCCCEEEccCCcCCCch--hhcCCC
Confidence 3567888888877 5544 5566778888888887777653 22 677788888888887655432 111 36
Q ss_pred CcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCcee-eeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCC
Q 012562 221 SLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFA-FEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELC 299 (461)
Q Consensus 221 ~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~ 299 (461)
+|++|.+.+|.+.+... .-.+++|++|.++++...... +..+++|+.+++.-+.. .+ +.. +..++
T Consensus 108 ~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l--~~--------~~~-l~~l~ 173 (308)
T 1h6u_A 108 SIKTLDLTSTQITDVTP---LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQV--SD--------LTP-LANLS 173 (308)
T ss_dssp TCCEEECTTSCCCCCGG---GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCC--CC--------CGG-GTTCT
T ss_pred CCCEEECCCCCCCCchh---hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcC--CC--------Chh-hcCCC
Confidence 78888887776422111 125677888888775443332 55677788777743211 00 111 55677
Q ss_pred CccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEecc
Q 012562 300 EVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEG 366 (461)
Q Consensus 300 ~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~~ 366 (461)
+|+.|++++|.+..+.. +. .+++|++|+++.+...... -+..+|+|+.|++..+.
T Consensus 174 ~L~~L~l~~n~l~~~~~------l~-~l~~L~~L~L~~N~l~~~~-----~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 174 KLTTLKADDNKISDISP------LA-SLPNLIEVHLKNNQISDVS-----PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp TCCEEECCSSCCCCCGG------GG-GCTTCCEEECTTSCCCBCG-----GGTTCTTCCEEEEEEEE
T ss_pred CCCEEECCCCccCcChh------hc-CCCCCCEEEccCCccCccc-----cccCCCCCCEEEccCCe
Confidence 88888888776543221 23 5567888877666442211 14667888888887764
No 63
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.86 E-value=1.2e-10 Score=123.85 Aligned_cols=226 Identities=12% Similarity=0.035 Sum_probs=140.3
Q ss_pred cCCeEEEEEEcceeeeCCC--CcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCc
Q 012562 121 RNVQVFDLTVYGEVTELPH--CLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR 197 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~--~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp 197 (461)
+++++|+++.+... .+|. .+..+++|+.|+|++| .+.. |.+..+++|++|+|.++.+.. +..-+.+++
T Consensus 548 ~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N-----~l~~lp~~~~L~~L~~L~Ls~N~l~~---lp~~l~~l~ 618 (876)
T 4ecn_A 548 PKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHN-----KVRHLEAFGTNVKLTDLKLDYNQIEE---IPEDFCAFT 618 (876)
T ss_dssp TTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTS-----CCCBCCCCCTTSEESEEECCSSCCSC---CCTTSCEEC
T ss_pred CCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCC-----CcccchhhcCCCcceEEECcCCcccc---chHHHhhcc
Confidence 37888888766544 7888 7888999999999998 4433 567788899999999888762 333467788
Q ss_pred c-ccceEEeeeecCCceEEEEe---cCCcCeEEEeccCCCCCCC-eE---EEEecCCeeeEEEecCCCCcee---eeCCC
Q 012562 198 L-LEKLILKSCSFRDFKILDIS---STSLKSLTLDNFGGDESGN-YK---VKIACPNLVSFNFLASWAPDFA---FEDLD 266 (461)
Q Consensus 198 ~-Le~L~L~~c~~~~~~~~~i~---~~~L~~L~l~~~~~~~~~~-~~---~~~~~p~L~~L~l~~~~~~~~~---~~~~~ 266 (461)
. |+.|+|++|.+..+.. .+. .++|+.|.+..|.+..... +. -....++|++|.++++....+. +..++
T Consensus 619 ~~L~~L~Ls~N~L~~lp~-~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~ 697 (876)
T 4ecn_A 619 DQVEGLGFSHNKLKYIPN-IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGS 697 (876)
T ss_dssp TTCCEEECCSSCCCSCCS-CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTC
T ss_pred ccCCEEECcCCCCCcCch-hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCC
Confidence 8 9999999987543321 111 1348888888887522100 00 0123468999999886554332 34678
Q ss_pred CceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhh
Q 012562 267 SLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPS 346 (461)
Q Consensus 267 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~ 346 (461)
+|+.+++.-+... ..|..........+..+++|+.|+|++|.+..+... .. . ..+++|+.|+++.+.... ++
T Consensus 698 ~L~~L~Ls~N~L~--~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~--l~-~-~~l~~L~~L~Ls~N~L~~--lp 769 (876)
T 4ecn_A 698 PISTIILSNNLMT--SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD--FR-A-TTLPYLSNMDVSYNCFSS--FP 769 (876)
T ss_dssp CCSEEECCSCCCS--CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGG--GS-T-TTCTTCCEEECCSSCCSS--CC
T ss_pred CCCEEECCCCcCC--ccChHHhccccccccccCCccEEECCCCCCccchHH--hh-h-ccCCCcCEEEeCCCCCCc--cc
Confidence 8999888543221 111100000000012234889999998876533221 11 0 145688999987775533 23
Q ss_pred HhhhhccCCCcceEEEEecc
Q 012562 347 IISLLNCSPNLEALTIYFEG 366 (461)
Q Consensus 347 ~~~lL~~~p~L~~L~l~~~~ 366 (461)
. -+..+++|+.|++..+.
T Consensus 770 ~--~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 770 T--QPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp C--GGGGCTTCCEEECCCCB
T ss_pred h--hhhcCCCCCEEECCCCC
Confidence 2 45678899999887643
No 64
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.86 E-value=8.2e-10 Score=111.83 Aligned_cols=242 Identities=12% Similarity=0.131 Sum_probs=142.2
Q ss_pred CCCccEEEeceecc--ccccccC--CCccccCcccEEEeeeEEEcChhhHHHHhh--cCccccceEEeeeecCCc-----
Q 012562 144 CESLEALKLACRQL--RMCVLKL--PFSVGFSRLKSLDLHNVEFLDHNLLHKFVS--SRRLLEKLILKSCSFRDF----- 212 (461)
Q Consensus 144 ~~~L~~L~L~~~~~--~~~~l~~--~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~--~cp~Le~L~L~~c~~~~~----- 212 (461)
+++|+.|++++|.. ....+.. +.+..+++|++|+|.++.+.+. .+..+.. .++.|+.|++++|.+.+.
T Consensus 189 l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~ 267 (520)
T 2z7x_B 189 VANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN-SFIRILQLVWHTTVWYFSISNVKLQGQLDFRD 267 (520)
T ss_dssp CSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHH-HHHHHHHHHHTSSCSEEEEEEEEEESCCCCCC
T ss_pred ccceeeccccccccccccceeecchhhhccccchhhccccccccCHH-HHHHHHHHhhhCcccEEEeecccccCccccch
Confidence 67788888887610 0000222 4566788999999999888776 5554443 357899999998874321
Q ss_pred --------eEEE---Ee----------------cCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCc---eee
Q 012562 213 --------KILD---IS----------------STSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPD---FAF 262 (461)
Q Consensus 213 --------~~~~---i~----------------~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~---~~~ 262 (461)
..+. +. .++|+.|.+.++.+.. ....-.+++|++|+++++.... ..+
T Consensus 268 ~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~---~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 344 (520)
T 2z7x_B 268 FDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVH---MLCPSKISPFLHLDFSNNLLTDTVFENC 344 (520)
T ss_dssp CCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCC---CCCCSSCCCCCEEECCSSCCCTTTTTTC
T ss_pred hhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccc---ccchhhCCcccEEEeECCccChhhhhhh
Confidence 1111 10 0346777777665311 1111257889999998865433 345
Q ss_pred eCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhh-hccccccccCCcccCcccEEEEEEeCCC
Q 012562 263 EDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRF-HFVLEERGFIPNSFNYLKSLVLSVSMAD 341 (461)
Q Consensus 263 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~ 341 (461)
..+++|+.+++.-+.. .. ...+...+..+++|+.|++++|.+.. +.. ..+. .+++|++|+++.+...
T Consensus 345 ~~l~~L~~L~L~~N~l-----~~--l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~----~~~~-~l~~L~~L~Ls~N~l~ 412 (520)
T 2z7x_B 345 GHLTELETLILQMNQL-----KE--LSKIAEMTTQMKSLQQLDISQNSVSYDEKK----GDCS-WTKSLLSLNMSSNILT 412 (520)
T ss_dssp CCCSSCCEEECCSSCC-----CB--HHHHHHHHTTCTTCCEEECCSSCCBCCGGG----CSCC-CCTTCCEEECCSSCCC
T ss_pred ccCCCCCEEEccCCcc-----Cc--cccchHHHhhCCCCCEEECCCCcCCccccc----chhc-cCccCCEEECcCCCCC
Confidence 6788899888843321 00 22355667889999999999987653 221 1122 4568888888766543
Q ss_pred cchhhHhhhhccCCCcceEEEEeccCCCccccccCcCcc--ccccceeEEEEEe--ecCChhHHHHHHHHHhcCcCcceE
Q 012562 342 WVVPSIISLLNCSPNLEALTIYFEGEDCDDWKISNKSIF--CLTCHLKTVELIH--VAGDENELELVRFLLKNGHVLKKL 417 (461)
Q Consensus 342 ~~~l~~~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~--~~~~~Lk~v~i~~--~~g~~~e~~~~~~ll~~a~~Le~~ 417 (461)
...... + .++|+.|++..+.-. .+ |. ..+++|+.+.+.+ +..-..+ .+.+.+.|+.+
T Consensus 413 ~~~~~~--l---~~~L~~L~Ls~N~l~-------~i-p~~~~~l~~L~~L~L~~N~l~~l~~~------~~~~l~~L~~L 473 (520)
T 2z7x_B 413 DTIFRC--L---PPRIKVLDLHSNKIK-------SI-PKQVVKLEALQELNVASNQLKSVPDG------IFDRLTSLQKI 473 (520)
T ss_dssp GGGGGS--C---CTTCCEEECCSSCCC-------CC-CGGGGGCTTCCEEECCSSCCCCCCTT------TTTTCTTCCEE
T ss_pred cchhhh--h---cccCCEEECCCCccc-------cc-chhhhcCCCCCEEECCCCcCCccCHH------HhccCCcccEE
Confidence 322221 1 168888888776531 12 21 1345666666652 2211111 34667778887
Q ss_pred EEE
Q 012562 418 SFS 420 (461)
Q Consensus 418 ~i~ 420 (461)
.+.
T Consensus 474 ~l~ 476 (520)
T 2z7x_B 474 WLH 476 (520)
T ss_dssp ECC
T ss_pred ECc
Confidence 776
No 65
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.85 E-value=3.1e-10 Score=112.83 Aligned_cols=184 Identities=14% Similarity=0.030 Sum_probs=125.9
Q ss_pred CcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEe
Q 012562 140 CLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDIS 218 (461)
Q Consensus 140 ~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~ 218 (461)
.+..+++|++|+++++ .+.. |.+..+++|++|+|.++.+++- . +..++.|++|++++|.+.+.. +.
T Consensus 37 ~~~~l~~L~~L~Ls~n-----~l~~~~~l~~l~~L~~L~Ls~n~l~~~---~--~~~l~~L~~L~Ls~N~l~~~~---~~ 103 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNS-----SITDMTGIEKLTGLTKLICTSNNITTL---D--LSQNTNLTYLACDSNKLTNLD---VT 103 (457)
T ss_dssp EHHHHTTCCEEECCSS-----CCCCCTTGGGCTTCSEEECCSSCCSCC---C--CTTCTTCSEEECCSSCCSCCC---CT
T ss_pred ChhHcCCCCEEEccCC-----CcccChhhcccCCCCEEEccCCcCCeE---c--cccCCCCCEEECcCCCCceee---cC
Confidence 4456899999999999 6655 6778899999999999988764 2 778999999999999876652 33
Q ss_pred -cCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCceeeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhc
Q 012562 219 -STSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNE 297 (461)
Q Consensus 219 -~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~ 297 (461)
.++|++|.+..+.+. .+. .-..++|++|.++++......+..+++|+.+++..+.. .+. + -+..
T Consensus 104 ~l~~L~~L~L~~N~l~---~l~-~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~-~~~--------~--~~~~ 168 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLT---KLD-VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKK-ITK--------L--DVTP 168 (457)
T ss_dssp TCTTCCEEECCSSCCS---CCC-CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSC-CCC--------C--CCTT
T ss_pred CCCcCCEEECCCCcCC---eec-CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCc-ccc--------c--cccc
Confidence 488999999998852 222 12678999999999777777788899999999843311 000 1 1345
Q ss_pred CCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEec
Q 012562 298 LCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFE 365 (461)
Q Consensus 298 l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~ 365 (461)
+++++.|+++++.+..+. +. .+++|+.|.+..+..... . +..+++|+.|++..+
T Consensus 169 l~~L~~L~ls~n~l~~l~-------l~-~l~~L~~L~l~~N~l~~~--~----l~~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 169 QTQLTTLDCSFNKITELD-------VS-QNKLLNRLNCDTNNITKL--D----LNQNIQLTFLDCSSN 222 (457)
T ss_dssp CTTCCEEECCSSCCCCCC-------CT-TCTTCCEEECCSSCCSCC--C----CTTCTTCSEEECCSS
T ss_pred CCcCCEEECCCCccceec-------cc-cCCCCCEEECcCCcCCee--c----cccCCCCCEEECcCC
Confidence 677888888877655321 22 344566666544432111 1 234455555555444
No 66
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.85 E-value=1.7e-11 Score=116.76 Aligned_cols=219 Identities=12% Similarity=0.039 Sum_probs=104.7
Q ss_pred cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccc
Q 012562 121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLL 199 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~L 199 (461)
+++++|++..+......|..+..+++|++|+|+++ .+.. |. ..+++|++|+|.++.+..- ....+.+++.|
T Consensus 78 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-----~l~~l~~-~~~~~L~~L~l~~n~i~~~--~~~~~~~l~~L 149 (332)
T 2ft3_A 78 QHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-----HLVEIPP-NLPSSLVELRIHDNRIRKV--PKGVFSGLRNM 149 (332)
T ss_dssp TTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-----CCCSCCS-SCCTTCCEEECCSSCCCCC--CSGGGSSCSSC
T ss_pred CCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-----cCCccCc-cccccCCEEECCCCccCcc--CHhHhCCCccC
Confidence 35666666444322223444445666666666666 3333 21 1125666666666655432 22235566666
Q ss_pred cceEEeeeecCC--ceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCce---eeeCCCCceEEEEE
Q 012562 200 EKLILKSCSFRD--FKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDF---AFEDLDSLQNAFIF 274 (461)
Q Consensus 200 e~L~L~~c~~~~--~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~l~l~ 274 (461)
+.|++.+|.... .....+...+|+.|.+..+.+. .+... -.++|++|.++++..... .+..+++|+.+++.
T Consensus 150 ~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~---~l~~~-~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~ 225 (332)
T 2ft3_A 150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT---GIPKD-LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLG 225 (332)
T ss_dssp CEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCS---SCCSS-SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCC
T ss_pred CEEECCCCccccCCCCcccccCCccCEEECcCCCCC---ccCcc-ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence 666666654321 1100111125666666665531 11100 125677777766443332 24556677777663
Q ss_pred EEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhH---hhhh
Q 012562 275 FDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSI---ISLL 351 (461)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~---~~lL 351 (461)
.+.. ...+ ...+..+++|+.|++++|.+..+. ..+. .+++|+.|++..+......... ....
T Consensus 226 ~N~l--~~~~-------~~~~~~l~~L~~L~L~~N~l~~lp-----~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~~ 290 (332)
T 2ft3_A 226 HNQI--RMIE-------NGSLSFLPTLRELHLDNNKLSRVP-----AGLP-DLKLLQVVYLHTNNITKVGVNDFCPVGFG 290 (332)
T ss_dssp SSCC--CCCC-------TTGGGGCTTCCEEECCSSCCCBCC-----TTGG-GCTTCCEEECCSSCCCBCCTTSSSCSSCC
T ss_pred CCcC--CcCC-------hhHhhCCCCCCEEECCCCcCeecC-----hhhh-cCccCCEEECCCCCCCccChhHccccccc
Confidence 3211 0000 112346677777777777654222 2233 5567777777655432111111 0011
Q ss_pred ccCCCcceEEEEecc
Q 012562 352 NCSPNLEALTIYFEG 366 (461)
Q Consensus 352 ~~~p~L~~L~l~~~~ 366 (461)
...+.|+.|++.+++
T Consensus 291 ~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 291 VKRAYYNGISLFNNP 305 (332)
T ss_dssp SSSCCBSEEECCSSS
T ss_pred cccccccceEeecCc
Confidence 124567777776654
No 67
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.83 E-value=4.9e-11 Score=115.02 Aligned_cols=74 Identities=22% Similarity=0.191 Sum_probs=45.7
Q ss_pred HHHHHHhcCC-CccEEEEecchhhhhccccccccCCcc-cCcccEEEEEEeCCCc---chhhHhhhhccCCCcceEEEEe
Q 012562 290 ILSKLLNELC-EVKALKLSTAFLRFHFVLEERGFIPNS-FNYLKSLVLSVSMADW---VVPSIISLLNCSPNLEALTIYF 364 (461)
Q Consensus 290 ~~~~~l~~l~-~l~~L~l~~~~~~~~~~~~~~~~l~~~-~~~L~~L~l~~~~~~~---~~l~~~~lL~~~p~L~~L~l~~ 364 (461)
.+...+..++ +|+.|++++|.+...........+. . .++|++|+++.+.... ..+.. ++..+++|+.|++..
T Consensus 186 ~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~-~~~~~L~~L~Ls~N~l~~~~~~~l~~--~~~~l~~L~~L~L~~ 262 (362)
T 3goz_A 186 ELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS-SIPNHVVSLNLCLNCLHGPSLENLKL--LKDSLKHLQTVYLDY 262 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH-HSCTTCCEEECCSSCCCCCCHHHHHH--TTTTTTTCSEEEEEH
T ss_pred HHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh-cCCCCceEEECcCCCCCcHHHHHHHH--HHhcCCCccEEEecc
Confidence 4566667774 8888888888765321111111121 2 2488888887776533 22233 667888888888888
Q ss_pred cc
Q 012562 365 EG 366 (461)
Q Consensus 365 ~~ 366 (461)
+.
T Consensus 263 n~ 264 (362)
T 3goz_A 263 DI 264 (362)
T ss_dssp HH
T ss_pred CC
Confidence 75
No 68
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.83 E-value=2.3e-10 Score=113.76 Aligned_cols=193 Identities=17% Similarity=0.124 Sum_probs=134.0
Q ss_pred cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCc
Q 012562 121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR 197 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp 197 (461)
+++++|+|+.+....-.|..+..+++|++|+|++| .+.. ..+..+++|++|+|.++.+..- ....+.+++
T Consensus 99 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-----~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~ 171 (452)
T 3zyi_A 99 HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-----WLTVIPSGAFEYLSKLRELWLRNNPIESI--PSYAFNRVP 171 (452)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-----CCSBCCTTTSSSCTTCCEEECCSCCCCEE--CTTTTTTCT
T ss_pred CCCCEEECCCCccCCcChhhccCcccCCEEECCCC-----cCCccChhhhcccCCCCEEECCCCCccee--CHhHHhcCC
Confidence 57999999766544444456667999999999999 5544 2466799999999999987642 234577899
Q ss_pred cccceEEeeeecCCceEEEE----ecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCce---eeeCCCCceE
Q 012562 198 LLEKLILKSCSFRDFKILDI----SSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDF---AFEDLDSLQN 270 (461)
Q Consensus 198 ~Le~L~L~~c~~~~~~~~~i----~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~ 270 (461)
+|+.|++.+|. .+..+.. ..++|+.|.+..|.+.+ +......++|++|+++++..... .+.++++|+.
T Consensus 172 ~L~~L~l~~~~--~l~~i~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 246 (452)
T 3zyi_A 172 SLMRLDLGELK--KLEYISEGAFEGLFNLKYLNLGMCNIKD---MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKK 246 (452)
T ss_dssp TCCEEECCCCT--TCCEECTTTTTTCTTCCEEECTTSCCSS---CCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCE
T ss_pred cccEEeCCCCC--CccccChhhccCCCCCCEEECCCCcccc---cccccccccccEEECcCCcCcccCcccccCccCCCE
Confidence 99999999864 2222211 13789999999888532 22122678999999999765443 4677899999
Q ss_pred EEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeC
Q 012562 271 AFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSM 339 (461)
Q Consensus 271 l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 339 (461)
+++.-+.. ... ....+.++++|+.|+|++|.+..+.. ..+. .+++|+.|++..+.
T Consensus 247 L~L~~n~l--~~~-------~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~-~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 247 LWVMNSQV--SLI-------ERNAFDGLASLVELNLAHNNLSSLPH----DLFT-PLRYLVELHLHHNP 301 (452)
T ss_dssp EECTTSCC--CEE-------CTTTTTTCTTCCEEECCSSCCSCCCT----TSST-TCTTCCEEECCSSC
T ss_pred EEeCCCcC--ceE-------CHHHhcCCCCCCEEECCCCcCCccCh----HHhc-cccCCCEEEccCCC
Confidence 99832211 000 11234578999999999997664332 2233 56799999997764
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.81 E-value=5.3e-10 Score=105.41 Aligned_cols=64 Identities=25% Similarity=0.167 Sum_probs=34.9
Q ss_pred HHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEecc
Q 012562 293 KLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEG 366 (461)
Q Consensus 293 ~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~~ 366 (461)
.++..+++|+.|++++|.+..... ...+. .+++|++|+++.+... ..... + . ++|+.|++..+.
T Consensus 222 ~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~-~l~~L~~L~Ls~N~l~-~ip~~--~-~--~~L~~L~Ls~N~ 285 (312)
T 1wwl_A 222 ALAAARVQLQGLDLSHNSLRDAAG---APSCD-WPSQLNSLNLSFTGLK-QVPKG--L-P--AKLSVLDLSYNR 285 (312)
T ss_dssp HHHHTTCCCSEEECTTSCCCSSCC---CSCCC-CCTTCCEEECTTSCCS-SCCSS--C-C--SEEEEEECCSSC
T ss_pred HHHhcCCCCCEEECCCCcCCcccc---hhhhh-hcCCCCEEECCCCccC-hhhhh--c-c--CCceEEECCCCC
Confidence 445567788888888776553221 01111 3457777777665433 11111 1 1 677777777654
No 70
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.80 E-value=2.4e-10 Score=113.22 Aligned_cols=193 Identities=16% Similarity=0.105 Sum_probs=131.7
Q ss_pred cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCc
Q 012562 121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR 197 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp 197 (461)
+++++|+|+.+....-.+..+..+++|++|+|++| .+.. ..+..+++|++|+|.++.+..- ....+.+++
T Consensus 88 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-----~l~~~~~~~~~~l~~L~~L~L~~N~i~~~--~~~~~~~l~ 160 (440)
T 3zyj_A 88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-----RLTTIPNGAFVYLSKLKELWLRNNPIESI--PSYAFNRIP 160 (440)
T ss_dssp SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-----CCSSCCTTTSCSCSSCCEEECCSCCCCEE--CTTTTTTCT
T ss_pred CCCCEEECCCCcCCccChhhccCCccCCEEECCCC-----cCCeeCHhHhhccccCceeeCCCCccccc--CHHHhhhCc
Confidence 57999999765433333345556999999999999 5555 2467899999999999877642 233577899
Q ss_pred cccceEEeeeecCCceEEEE----ecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCce---eeeCCCCceE
Q 012562 198 LLEKLILKSCSFRDFKILDI----SSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDF---AFEDLDSLQN 270 (461)
Q Consensus 198 ~Le~L~L~~c~~~~~~~~~i----~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~ 270 (461)
+|+.|+|.+|.. +..+.. ..++|+.|.+.+|.+. .+......++|++|+++++..... .+.++++|+.
T Consensus 161 ~L~~L~l~~~~~--l~~i~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 235 (440)
T 3zyj_A 161 SLRRLDLGELKR--LSYISEGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK 235 (440)
T ss_dssp TCCEEECCCCTT--CCEECTTTTTTCSSCCEEECTTSCCS---SCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccCEeCCCCCCC--cceeCcchhhcccccCeecCCCCcCc---cccccCCCcccCEEECCCCccCccChhhhccCccCCE
Confidence 999999998642 222111 1378999999988852 222123678999999998755443 4567889999
Q ss_pred EEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeC
Q 012562 271 AFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSM 339 (461)
Q Consensus 271 l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 339 (461)
+++.-+... .. ....+..+++|+.|+|++|.+..+.. ..+. .+++|+.|++..+.
T Consensus 236 L~L~~n~l~--~~-------~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~-~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 236 LWMIQSQIQ--VI-------ERNAFDNLQSLVEINLAHNNLTLLPH----DLFT-PLHHLERIHLHHNP 290 (440)
T ss_dssp EECTTCCCC--EE-------CTTSSTTCTTCCEEECTTSCCCCCCT----TTTS-SCTTCCEEECCSSC
T ss_pred EECCCCcee--EE-------ChhhhcCCCCCCEEECCCCCCCccCh----hHhc-cccCCCEEEcCCCC
Confidence 998432210 00 11234578999999999998764332 2233 56799999997664
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.80 E-value=7e-10 Score=102.25 Aligned_cols=65 Identities=15% Similarity=0.176 Sum_probs=41.4
Q ss_pred eCCCCcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeec
Q 012562 136 ELPHCLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSF 209 (461)
Q Consensus 136 ~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~ 209 (461)
.+|..+. ++|++|+|+++ .+.. ..+..+++|++|+|.++.++.- ...++.+++.|++|+|++|.+
T Consensus 30 ~ip~~~~--~~l~~L~l~~n-----~l~~~~~~~~~~l~~L~~L~l~~n~l~~i--~~~~~~~l~~L~~L~l~~n~l 97 (270)
T 2o6q_A 30 AIPSNIP--ADTKKLDLQSN-----KLSSLPSKAFHRLTKLRLLYLNDNKLQTL--PAGIFKELKNLETLWVTDNKL 97 (270)
T ss_dssp SCCSCCC--TTCSEEECCSS-----CCSCCCTTSSSSCTTCCEEECCSSCCSCC--CTTTTSSCTTCCEEECCSSCC
T ss_pred ccCCCCC--CCCCEEECcCC-----CCCeeCHHHhcCCCCCCEEECCCCccCee--ChhhhcCCCCCCEEECCCCcC
Confidence 4554433 46788888877 4444 2456677888888877766532 233456677888888877653
No 72
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.79 E-value=1.6e-10 Score=106.77 Aligned_cols=61 Identities=15% Similarity=0.076 Sum_probs=32.6
Q ss_pred cccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeee
Q 012562 141 LVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCS 208 (461)
Q Consensus 141 l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~ 208 (461)
+..+++|++|+|++| .+.. +....+++|++|+|.++.+++- ....+.+++.|++|++.+|.
T Consensus 59 l~~l~~L~~L~l~~n-----~l~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~ 120 (272)
T 3rfs_A 59 IQYLPNVRYLALGGN-----KLHDISALKELTNLTYLILTGNQLQSL--PNGVFDKLTNLKELVLVENQ 120 (272)
T ss_dssp GGGCTTCCEEECTTS-----CCCCCGGGTTCTTCCEEECTTSCCCCC--CTTTTTTCTTCCEEECTTSC
T ss_pred cccCCCCcEEECCCC-----CCCCchhhcCCCCCCEEECCCCccCcc--ChhHhcCCcCCCEEECCCCc
Confidence 445566666666666 4333 3344556666666666555431 22234555666666666554
No 73
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.79 E-value=3.9e-09 Score=70.59 Aligned_cols=40 Identities=28% Similarity=0.455 Sum_probs=34.0
Q ss_pred CCCCCCCCChHHHHHHhcCCChhHHHHHHHHhHhHHHhhc
Q 012562 14 DGDRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWL 53 (461)
Q Consensus 14 ~~D~is~LPd~iL~~Ils~Lp~~d~~~~s~vskrWr~lw~ 53 (461)
..+.++.||+||+.+||++||.+|.++++.|||+|+.+..
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 4567999999999999999999999999999999998643
No 74
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.77 E-value=3.2e-10 Score=106.84 Aligned_cols=107 Identities=14% Similarity=0.041 Sum_probs=66.9
Q ss_pred cccEEEEEEeccCCchhHHHHHHHHHhcCCeEEEEEEcceeeeCCCCc--ccCCCccEEEeceeccccccccC--C----
Q 012562 94 SIQRFRLYCLSYANDYTVYRWVCAVARRNVQVFDLTVYGEVTELPHCL--VTCESLEALKLACRQLRMCVLKL--P---- 165 (461)
Q Consensus 94 ~i~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~lp~~l--~~~~~L~~L~L~~~~~~~~~l~~--~---- 165 (461)
.++.+.+..... ....+..........++++|++.........|..+ ..+++|++|+|++| .+.. +
T Consensus 65 ~l~~l~l~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-----~i~~~~~~~~~ 138 (310)
T 4glp_A 65 RVRRLTVGAAQV-PAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNV-----SWATGRSWLAE 138 (310)
T ss_dssp CCCEEEECSCCC-BHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESC-----CCSSTTSSHHH
T ss_pred ceeEEEEeCCcC-CHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecc-----cccchhhhhHH
Confidence 456665553321 22344555555555678888887665455566665 56778888888888 4433 1
Q ss_pred -CccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeee
Q 012562 166 -FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCS 208 (461)
Q Consensus 166 -~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~ 208 (461)
....+++|++|+|.++.+.. .....+.+++.|+.|+|++|.
T Consensus 139 ~~~~~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~ 180 (310)
T 4glp_A 139 LQQWLKPGLKVLSIAQAHSPA--FSCEQVRAFPALTSLDLSDNP 180 (310)
T ss_dssp HHTTBCSCCCEEEEECCSSCC--CCTTSCCCCTTCCEEECCSCT
T ss_pred HHhhhccCCCEEEeeCCCcch--hhHHHhccCCCCCEEECCCCC
Confidence 12357788888888777654 223345677888888888775
No 75
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.77 E-value=3.7e-10 Score=118.27 Aligned_cols=180 Identities=16% Similarity=0.058 Sum_probs=102.3
Q ss_pred CcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceE-EEE-ecCCcCeEEEeccCCCCCCCeEEEEecCCee
Q 012562 171 SRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKI-LDI-SSTSLKSLTLDNFGGDESGNYKVKIACPNLV 248 (461)
Q Consensus 171 ~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~-~~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~ 248 (461)
++|+.|+|.++.+++. ....+.+++.|+.|++++|.+.+... ..+ ..++|+.|.+..|.+...... ....+|+|+
T Consensus 381 ~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~L~ 457 (680)
T 1ziw_A 381 SPLHILNLTKNKISKI--ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRN-SFALVPSLQ 457 (680)
T ss_dssp SCCCEEECTTSCCCEE--CTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTT-TTTTCTTCC
T ss_pred CcCceEECCCCCCCeE--ChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChh-hhhcCcccc
Confidence 3555555555544431 22346678999999998875322100 001 136788888887763100000 011468888
Q ss_pred eEEEecCCCC-----ceeeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhcccccc---
Q 012562 249 SFNFLASWAP-----DFAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEER--- 320 (461)
Q Consensus 249 ~L~l~~~~~~-----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~--- 320 (461)
+|.+.++... +..+..+++|+.+++.-+.. ...+ ...+.++++|+.|++++|.+..+.....+
T Consensus 458 ~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l--~~i~-------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 528 (680)
T 1ziw_A 458 RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI--ANIN-------DDMLEGLEKLEILDLQHNNLARLWKHANPGGP 528 (680)
T ss_dssp EEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCC--CCCC-------TTTTTTCTTCCEEECCSSCCGGGGSTTSTTSC
T ss_pred cchhccccccccccCCcccccCCCCCEEECCCCCC--CcCC-------hhhhccccccCEEeCCCCCccccchhhccCCc
Confidence 8888774321 23356778888888843322 1111 12345678888999888876654332211
Q ss_pred -ccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEecc
Q 012562 321 -GFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEG 366 (461)
Q Consensus 321 -~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~~ 366 (461)
..+. .+++|+.|+++.+... ..... .+..+++|+.|++..+.
T Consensus 529 ~~~~~-~l~~L~~L~L~~N~l~-~i~~~--~~~~l~~L~~L~Ls~N~ 571 (680)
T 1ziw_A 529 IYFLK-GLSHLHILNLESNGFD-EIPVE--VFKDLFELKIIDLGLNN 571 (680)
T ss_dssp CCTTT-TCTTCCEEECCSSCCC-CCCTT--TTTTCTTCCEEECCSSC
T ss_pred chhhc-CCCCCCEEECCCCCCC-CCCHH--HcccccCcceeECCCCC
Confidence 1123 5668888888766443 11122 45778888888887654
No 76
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.77 E-value=2.2e-09 Score=100.00 Aligned_cols=77 Identities=13% Similarity=0.059 Sum_probs=39.2
Q ss_pred CCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCcccc
Q 012562 122 NVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLE 200 (461)
Q Consensus 122 ~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le 200 (461)
++++|++.... ...+| .+..+++|++|+|++| .+.. +....+++|++|+|.++.+++- .. +..++.|+
T Consensus 47 ~L~~L~l~~~~-i~~~~-~~~~l~~L~~L~L~~n-----~l~~~~~l~~l~~L~~L~l~~n~l~~~---~~-l~~l~~L~ 115 (291)
T 1h6t_A 47 SIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGN-----KLTDIKPLANLKNLGWLFLDENKVKDL---SS-LKDLKKLK 115 (291)
T ss_dssp TCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSS-----CCCCCGGGTTCTTCCEEECCSSCCCCG---GG-GTTCTTCC
T ss_pred cccEEEccCCC-cccCh-hHhcCCCCCEEEccCC-----ccCCCcccccCCCCCEEECCCCcCCCC---hh-hccCCCCC
Confidence 45555553321 11222 2444566666666666 4433 2245566666666666655432 11 45566666
Q ss_pred ceEEeeeec
Q 012562 201 KLILKSCSF 209 (461)
Q Consensus 201 ~L~L~~c~~ 209 (461)
.|++++|.+
T Consensus 116 ~L~L~~n~i 124 (291)
T 1h6t_A 116 SLSLEHNGI 124 (291)
T ss_dssp EEECTTSCC
T ss_pred EEECCCCcC
Confidence 666666543
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.76 E-value=3.8e-10 Score=105.18 Aligned_cols=104 Identities=13% Similarity=-0.001 Sum_probs=53.7
Q ss_pred ccCCCccEEEeceeccccccccCCCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEecCC
Q 012562 142 VTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDISSTS 221 (461)
Q Consensus 142 ~~~~~L~~L~L~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~~~ 221 (461)
..+++|+.++++++ .+......-.++|++|+|.++.++.- ....+.+++.|+.|+|++|.+.++... ...++
T Consensus 7 ~~l~~l~~l~~~~~-----~l~~ip~~~~~~l~~L~L~~N~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~ 78 (290)
T 1p9a_G 7 SKVASHLEVNCDKR-----NLTALPPDLPKDTTILHLSENLLYTF--SLATLMPYTRLTQLNLDRAELTKLQVD-GTLPV 78 (290)
T ss_dssp ECSTTCCEEECTTS-----CCSSCCSCCCTTCCEEECTTSCCSEE--EGGGGTTCTTCCEEECTTSCCCEEECC-SCCTT
T ss_pred cccCCccEEECCCC-----CCCcCCCCCCCCCCEEEcCCCcCCcc--CHHHhhcCCCCCEEECCCCccCcccCC-CCCCc
Confidence 34566777777666 44441111235677777776665432 223355667777777777654332211 12255
Q ss_pred cCeEEEeccCCCCCCCeE-EEEecCCeeeEEEecCC
Q 012562 222 LKSLTLDNFGGDESGNYK-VKIACPNLVSFNFLASW 256 (461)
Q Consensus 222 L~~L~l~~~~~~~~~~~~-~~~~~p~L~~L~l~~~~ 256 (461)
|+.|.+..+.+ ..+. .....++|++|.++++.
T Consensus 79 L~~L~Ls~N~l---~~l~~~~~~l~~L~~L~l~~N~ 111 (290)
T 1p9a_G 79 LGTLDLSHNQL---QSLPLLGQTLPALTVLDVSFNR 111 (290)
T ss_dssp CCEEECCSSCC---SSCCCCTTTCTTCCEEECCSSC
T ss_pred CCEEECCCCcC---CcCchhhccCCCCCEEECCCCc
Confidence 66666665553 1111 11145566666666643
No 78
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.75 E-value=1.3e-08 Score=104.47 Aligned_cols=229 Identities=16% Similarity=0.095 Sum_probs=153.2
Q ss_pred hcCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCcc
Q 012562 120 RRNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRL 198 (461)
Q Consensus 120 ~~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~ 198 (461)
..+++.|+++... ...+|..+. ++|++|+|++| .+.. |. .+++|++|+|++|.++.- .. .+++
T Consensus 39 ~~~l~~L~ls~n~-L~~lp~~l~--~~L~~L~L~~N-----~l~~lp~--~l~~L~~L~Ls~N~l~~l---p~---~l~~ 102 (622)
T 3g06_A 39 NNGNAVLNVGESG-LTTLPDCLP--AHITTLVIPDN-----NLTSLPA--LPPELRTLEVSGNQLTSL---PV---LPPG 102 (622)
T ss_dssp HHCCCEEECCSSC-CSCCCSCCC--TTCSEEEECSC-----CCSCCCC--CCTTCCEEEECSCCCSCC---CC---CCTT
T ss_pred CCCCcEEEecCCC-cCccChhhC--CCCcEEEecCC-----CCCCCCC--cCCCCCEEEcCCCcCCcC---CC---CCCC
Confidence 3468888886554 337777665 79999999999 6655 43 688999999999987642 22 6799
Q ss_pred ccceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCceeeeCCCCceEEEEEEEee
Q 012562 199 LEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFFDII 278 (461)
Q Consensus 199 Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~ 278 (461)
|+.|+|++|.+.++.. ..++|+.|.+.+|.+. .+. ...++|++|.++++....+. ...++|+.+++..+..
T Consensus 103 L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~---~lp--~~l~~L~~L~Ls~N~l~~l~-~~~~~L~~L~L~~N~l 173 (622)
T 3g06_A 103 LLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLT---SLP--VLPPGLQELSVSDNQLASLP-ALPSELCKLWAYNNQL 173 (622)
T ss_dssp CCEEEECSCCCCCCCC---CCTTCCEEECCSSCCS---CCC--CCCTTCCEEECCSSCCSCCC-CCCTTCCEEECCSSCC
T ss_pred CCEEECcCCcCCCCCC---CCCCcCEEECCCCCCC---cCC--CCCCCCCEEECcCCcCCCcC-CccCCCCEEECCCCCC
Confidence 9999999987665433 4578999999988752 222 13589999999986554422 2456788887743221
Q ss_pred cCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcc
Q 012562 279 DRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLE 358 (461)
Q Consensus 279 ~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~ 358 (461)
..+-..+++|+.|++++|.+.. +|..+++|+.|.+..+.... +-...++|+
T Consensus 174 -------------~~l~~~~~~L~~L~Ls~N~l~~---------l~~~~~~L~~L~L~~N~l~~-------l~~~~~~L~ 224 (622)
T 3g06_A 174 -------------TSLPMLPSGLQELSVSDNQLAS---------LPTLPSELYKLWAYNNRLTS-------LPALPSGLK 224 (622)
T ss_dssp -------------SCCCCCCTTCCEEECCSSCCSC---------CCCCCTTCCEEECCSSCCSS-------CCCCCTTCC
T ss_pred -------------CCCcccCCCCcEEECCCCCCCC---------CCCccchhhEEECcCCcccc-------cCCCCCCCC
Confidence 1111356889999999987553 22244689999987664321 122358899
Q ss_pred eEEEEeccCCCccccccCcCccccccceeEEEEEe--ecCChhHHHHHHHHHhcCcCcceEEEEc
Q 012562 359 ALTIYFEGEDCDDWKISNKSIFCLTCHLKTVELIH--VAGDENELELVRFLLKNGHVLKKLSFSW 421 (461)
Q Consensus 359 ~L~l~~~~~~~~~~~~~~~~~~~~~~~Lk~v~i~~--~~g~~~e~~~~~~ll~~a~~Le~~~i~~ 421 (461)
.|++..+.-. .+ + ...++|+.+.+.+ +..-.. ..+.|+.+.+..
T Consensus 225 ~L~Ls~N~L~-------~l-p-~~l~~L~~L~Ls~N~L~~lp~----------~~~~L~~L~Ls~ 270 (622)
T 3g06_A 225 ELIVSGNRLT-------SL-P-VLPSELKELMVSGNRLTSLPM----------LPSGLLSLSVYR 270 (622)
T ss_dssp EEECCSSCCS-------CC-C-CCCTTCCEEECCSSCCSCCCC----------CCTTCCEEECCS
T ss_pred EEEccCCccC-------cC-C-CCCCcCcEEECCCCCCCcCCc----------ccccCcEEeCCC
Confidence 9999876531 13 2 2447788887763 221111 567888888763
No 79
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.73 E-value=1.2e-09 Score=111.68 Aligned_cols=75 Identities=19% Similarity=0.251 Sum_probs=43.3
Q ss_pred cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC---C-CccccCcccEEEeeeEEEcChhhHHHHhhcC
Q 012562 121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL---P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSR 196 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~c 196 (461)
+++++|+++.+. ...+|.. .+++|++|+|++| .+.. | .+..+++|++|+|.++.+... .+ .++
T Consensus 100 ~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~Ls~N-----~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-~~----~~l 166 (562)
T 3a79_B 100 QDLEYLDVSHNR-LQNISCC--PMASLRHLDLSFN-----DFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-DL----LPV 166 (562)
T ss_dssp TTCCEEECTTSC-CCEECSC--CCTTCSEEECCSS-----CCSBCCCCGGGGGCTTCCEEEEECSBCCTT-TT----GGG
T ss_pred CCCCEEECCCCc-CCccCcc--ccccCCEEECCCC-----CccccCchHhhcccCcccEEecCCCccccC-ch----hhh
Confidence 467777775443 2255655 5677777777777 4332 2 355677777777777666543 22 233
Q ss_pred ccc--cceEEeeee
Q 012562 197 RLL--EKLILKSCS 208 (461)
Q Consensus 197 p~L--e~L~L~~c~ 208 (461)
+.| +.|++++|.
T Consensus 167 ~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 167 AHLHLSCILLDLVS 180 (562)
T ss_dssp TTSCEEEEEEEESS
T ss_pred hhceeeEEEeeccc
Confidence 344 666666554
No 80
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.73 E-value=3e-10 Score=118.96 Aligned_cols=228 Identities=15% Similarity=0.099 Sum_probs=115.4
Q ss_pred cCCeEEEEEEcc-eeeeCCCCccc---CCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHh
Q 012562 121 RNVQVFDLTVYG-EVTELPHCLVT---CESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFV 193 (461)
Q Consensus 121 ~~l~~L~l~~~~-~~~~lp~~l~~---~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~ 193 (461)
+++++|+++.+. ....++...+. .++|+.|++++| .+.. ..+..+++|+.|+|.++.+.+. .....+
T Consensus 353 ~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n-----~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~ 426 (680)
T 1ziw_A 353 INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN-----KISKIESDAFSWLGHLEVLDLGLNEIGQE-LTGQEW 426 (680)
T ss_dssp TTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTS-----CCCEECTTTTTTCTTCCEEECCSSCCEEE-CCSGGG
T ss_pred cCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCC-----CCCeEChhhhhCCCCCCEEeCCCCcCccc-cCcccc
Confidence 468888874321 12223332221 357888888877 4333 2455677888888887766542 112345
Q ss_pred hcCccccceEEeeeecCCceEEEE-ecCCcCeEEEeccCCCCCCCeEEE-EecCCeeeEEEecCCCCce---eeeCCCCc
Q 012562 194 SSRRLLEKLILKSCSFRDFKILDI-SSTSLKSLTLDNFGGDESGNYKVK-IACPNLVSFNFLASWAPDF---AFEDLDSL 268 (461)
Q Consensus 194 ~~cp~Le~L~L~~c~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~~~-~~~p~L~~L~l~~~~~~~~---~~~~~~~L 268 (461)
.+++.|++|++++|...+...-.+ ..++|+.|.+.++.....+..... -.+++|++|+++++..... .+..+++|
T Consensus 427 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L 506 (680)
T 1ziw_A 427 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL 506 (680)
T ss_dssp TTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccccc
Confidence 677888888887765211110000 136677777776653111111111 1456777777776543332 24556677
Q ss_pred eEEEEEEEeecC---CCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchh
Q 012562 269 QNAFIFFDIIDR---DERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVP 345 (461)
Q Consensus 269 ~~l~l~~~~~~~---~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l 345 (461)
+.+++.-+.... ...|. .....+.++++|+.|++++|.+..+.. ..+. .+++|+.|+++.+.... ..
T Consensus 507 ~~L~Ls~N~l~~~~~~~~~~----~~~~~~~~l~~L~~L~L~~N~l~~i~~----~~~~-~l~~L~~L~Ls~N~l~~-l~ 576 (680)
T 1ziw_A 507 EILDLQHNNLARLWKHANPG----GPIYFLKGLSHLHILNLESNGFDEIPV----EVFK-DLFELKIIDLGLNNLNT-LP 576 (680)
T ss_dssp CEEECCSSCCGGGGSTTSTT----SCCCTTTTCTTCCEEECCSSCCCCCCT----TTTT-TCTTCCEEECCSSCCCC-CC
T ss_pred CEEeCCCCCccccchhhccC----CcchhhcCCCCCCEEECCCCCCCCCCH----HHcc-cccCcceeECCCCCCCc-CC
Confidence 777763321100 00000 000124556777777777766543221 1222 44567777775553321 11
Q ss_pred hHhhhhccCCCcceEEEEecc
Q 012562 346 SIISLLNCSPNLEALTIYFEG 366 (461)
Q Consensus 346 ~~~~lL~~~p~L~~L~l~~~~ 366 (461)
.. .+..+++|+.|++..+.
T Consensus 577 ~~--~~~~l~~L~~L~L~~N~ 595 (680)
T 1ziw_A 577 AS--VFNNQVSLKSLNLQKNL 595 (680)
T ss_dssp TT--TTTTCTTCCEEECTTSC
T ss_pred Hh--HhCCCCCCCEEECCCCc
Confidence 11 34566677777666553
No 81
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.70 E-value=8e-10 Score=102.70 Aligned_cols=197 Identities=17% Similarity=0.125 Sum_probs=113.0
Q ss_pred cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEE-EcChhhHHHHhhcC
Q 012562 121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVE-FLDHNLLHKFVSSR 196 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~-~~~~~~l~~l~~~c 196 (461)
+++++|+++......-.+..+..+++|++|+|+++ .+.. ..+..+++|++|+|.++. +.. .....+.++
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-----~l~~~~~~~~~~l~~L~~L~l~~n~~l~~--~~~~~~~~l 104 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-----VLARIDAAAFTGLALLEQLDLSDNAQLRS--VDPATFHGL 104 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-----CCCEECTTTTTTCTTCCEEECCSCTTCCC--CCTTTTTTC
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-----ccceeCHhhcCCccCCCEEeCCCCCCccc--cCHHHhcCC
Confidence 35677777444322222234555777888887777 4333 245567777888777765 432 112335667
Q ss_pred ccccceEEeeeecCCceEEEEe-cCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCcee---eeCCCCceEEE
Q 012562 197 RLLEKLILKSCSFRDFKILDIS-STSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFA---FEDLDSLQNAF 272 (461)
Q Consensus 197 p~Le~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~l~ 272 (461)
+.|++|++.+|.+.+...-.+. .++|++|.+..+.+..... ...-.+++|++|.++++...... +..+++|+.++
T Consensus 105 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 183 (285)
T 1ozn_A 105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD-DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183 (285)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH-hHhccCCCccEEECCCCcccccCHHHhcCccccCEEE
Confidence 7788887777754432211111 3677777777766421110 00114678888888875544332 45677888888
Q ss_pred EEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeC
Q 012562 273 IFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSM 339 (461)
Q Consensus 273 l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 339 (461)
+.-+.. ... ....+..+++|+.|++++|.+..+.. ..+. .+++|+.|++..+.
T Consensus 184 l~~n~l--~~~-------~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~-~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 184 LHQNRV--AHV-------HPHAFRDLGRLMTLYLFANNLSALPT----EALA-PLRALQYLRLNDNP 236 (285)
T ss_dssp CCSSCC--CEE-------CTTTTTTCTTCCEEECCSSCCSCCCH----HHHT-TCTTCCEEECCSSC
T ss_pred CCCCcc--ccc-------CHhHccCcccccEeeCCCCcCCcCCH----HHcc-cCcccCEEeccCCC
Confidence 743211 000 12234567899999999987664322 1233 56689999997664
No 82
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.66 E-value=3.7e-09 Score=108.39 Aligned_cols=147 Identities=18% Similarity=0.131 Sum_probs=76.1
Q ss_pred cccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEec
Q 012562 141 LVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDISS 219 (461)
Q Consensus 141 l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~ 219 (461)
+..+++|+.|+|++| .+.. +.+..+++|+.|+|.++.+.+- . .+..++.|+.|+|++|.+.++..
T Consensus 61 l~~l~~L~~L~Ls~N-----~l~~~~~l~~l~~L~~L~Ls~N~l~~l---~-~l~~l~~L~~L~Ls~N~l~~l~~----- 126 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGN-----KLTDIKPLTNLKNLGWLFLDENKIKDL---S-SLKDLKKLKSLSLEHNGISDING----- 126 (605)
T ss_dssp GGGCTTCCEEECTTS-----CCCCCGGGGGCTTCCEEECCSSCCCCC---T-TSTTCTTCCEEECTTSCCCCCGG-----
T ss_pred HccCCCCCEEEeeCC-----CCCCChhhccCCCCCEEECcCCCCCCC---h-hhccCCCCCEEEecCCCCCCCcc-----
Confidence 444556666666655 4333 2244555666666655555432 1 24455555555555554332210
Q ss_pred CCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCce-eeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcC
Q 012562 220 TSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDF-AFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNEL 298 (461)
Q Consensus 220 ~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l 298 (461)
...+++|+.|.++++..... .+..+++|+.++++-+.. .. +.. +..+
T Consensus 127 ---------------------l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l--~~--------~~~-l~~l 174 (605)
T 1m9s_A 127 ---------------------LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQI--SD--------IVP-LAGL 174 (605)
T ss_dssp ---------------------GGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCC--CC--------CGG-GTTC
T ss_pred ---------------------ccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcC--CC--------chh-hccC
Confidence 11345555555555333222 234455555555532211 00 111 5678
Q ss_pred CCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCC
Q 012562 299 CEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMA 340 (461)
Q Consensus 299 ~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 340 (461)
++|+.|+|++|.+..+ ..+. .+++|+.|++..+..
T Consensus 175 ~~L~~L~Ls~N~i~~l------~~l~-~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 175 TKLQNLYLSKNHISDL------RALA-GLKNLDVLELFSQEC 209 (605)
T ss_dssp TTCCEEECCSSCCCBC------GGGT-TCTTCSEEECCSEEE
T ss_pred CCCCEEECcCCCCCCC------hHHc-cCCCCCEEEccCCcC
Confidence 8899999998876543 1233 566899999876643
No 83
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.66 E-value=2.2e-09 Score=93.87 Aligned_cols=80 Identities=15% Similarity=0.123 Sum_probs=46.9
Q ss_pred cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccc
Q 012562 121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLL 199 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~L 199 (461)
+++++|++.... ...+| .+..+++|++|++++| .+.. +.+..+++|++|+|.++.+++. ....+.++|.|
T Consensus 44 ~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~n-----~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L 114 (197)
T 4ezg_A 44 NSLTYITLANIN-VTDLT-GIEYAHNIKDLTINNI-----HATNYNPISGLSNLERLRIMGKDVTSD--KIPNLSGLTSL 114 (197)
T ss_dssp HTCCEEEEESSC-CSCCT-TGGGCTTCSEEEEESC-----CCSCCGGGTTCTTCCEEEEECTTCBGG--GSCCCTTCTTC
T ss_pred CCccEEeccCCC-ccChH-HHhcCCCCCEEEccCC-----CCCcchhhhcCCCCCEEEeECCccCcc--cChhhcCCCCC
Confidence 356667665443 22445 4556677777777776 4444 3455667777777776666542 12224566777
Q ss_pred cceEEeeeec
Q 012562 200 EKLILKSCSF 209 (461)
Q Consensus 200 e~L~L~~c~~ 209 (461)
+.|++++|.+
T Consensus 115 ~~L~Ls~n~i 124 (197)
T 4ezg_A 115 TLLDISHSAH 124 (197)
T ss_dssp CEEECCSSBC
T ss_pred CEEEecCCcc
Confidence 7777776654
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.65 E-value=6.6e-10 Score=107.06 Aligned_cols=225 Identities=15% Similarity=0.066 Sum_probs=126.0
Q ss_pred CCCCcccCCCccEEEeceeccccccccCC-------CccccC-cccEEEeeeEEEcCh--hhHHHHhhcC-ccccceEEe
Q 012562 137 LPHCLVTCESLEALKLACRQLRMCVLKLP-------FSVGFS-RLKSLDLHNVEFLDH--NLLHKFVSSR-RLLEKLILK 205 (461)
Q Consensus 137 lp~~l~~~~~L~~L~L~~~~~~~~~l~~~-------~~~~l~-~L~~L~L~~~~~~~~--~~l~~l~~~c-p~Le~L~L~ 205 (461)
+|..+...++|++|+|++| .+... .+..++ +|++|+|+++.+++. ..+..++..+ +.|++|+|+
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n-----~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls 88 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLN-----NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLS 88 (362)
T ss_dssp HHHHHTSCTTCCEEECTTS-----CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECC
T ss_pred HHHHHhCCCCceEEEccCC-----CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECc
Confidence 3333334567999999999 55541 234577 899999999988765 2344444444 899999999
Q ss_pred eeecCCceEEEE----e-c-CCcCeEEEeccCCCCCCCeEEE--E-e-cCCeeeEEEecCCCCceeeeCCCCceEEEEEE
Q 012562 206 SCSFRDFKILDI----S-S-TSLKSLTLDNFGGDESGNYKVK--I-A-CPNLVSFNFLASWAPDFAFEDLDSLQNAFIFF 275 (461)
Q Consensus 206 ~c~~~~~~~~~i----~-~-~~L~~L~l~~~~~~~~~~~~~~--~-~-~p~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~ 275 (461)
+|.+.+.....+ . . ++|++|.+..|.+.+.+...+. + . .++|++|+++++.....
T Consensus 89 ~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~--------------- 153 (362)
T 3goz_A 89 GNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK--------------- 153 (362)
T ss_dssp SSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS---------------
T ss_pred CCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH---------------
Confidence 987543221111 0 1 5677777776663111110000 0 0 13666666665322210
Q ss_pred EeecCCCCchhhHHHHHHHHhcCC-CccEEEEecchhhhhccccccccCCccc-CcccEEEEEEeCCCc-chhhHhhhhc
Q 012562 276 DIIDRDERDNESCHILSKLLNELC-EVKALKLSTAFLRFHFVLEERGFIPNSF-NYLKSLVLSVSMADW-VVPSIISLLN 352 (461)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~l~~l~-~l~~L~l~~~~~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~~~~-~~l~~~~lL~ 352 (461)
....+...+..++ +++.|++++|.+...........+. .+ .+|++|+++.+.... ........+.
T Consensus 154 -----------~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~ 221 (362)
T 3goz_A 154 -----------SSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLA-SIPASVTSLDLSANLLGLKSYAELAYIFS 221 (362)
T ss_dssp -----------CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred -----------HHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHH-hCCCCCCEEECCCCCCChhHHHHHHHHHh
Confidence 0334666677776 9999999999875432211111222 34 499999998776522 2211111444
Q ss_pred c-CCCcceEEEEeccCCCccccccCcCccccccceeEEEEEee
Q 012562 353 C-SPNLEALTIYFEGEDCDDWKISNKSIFCLTCHLKTVELIHV 394 (461)
Q Consensus 353 ~-~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~Lk~v~i~~~ 394 (461)
. +++|+.|++..+.-....-+.... .....++|+.+.+.+-
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~-~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLENLKL-LKDSLKHLQTVYLDYD 263 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHHHHHH-TTTTTTTCSEEEEEHH
T ss_pred cCCCCceEEECcCCCCCcHHHHHHHH-HHhcCCCccEEEeccC
Confidence 4 679999999987632100000000 1113467899888843
No 85
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.65 E-value=8.3e-10 Score=101.76 Aligned_cols=175 Identities=19% Similarity=0.144 Sum_probs=103.8
Q ss_pred cCCeEEEEEEcceeeeCCC-CcccCCCccEEEeceeccccccccC-C--CccccCcccEEEeeeEEEcChhhHHHHhhcC
Q 012562 121 RNVQVFDLTVYGEVTELPH-CLVTCESLEALKLACRQLRMCVLKL-P--FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSR 196 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~~~~l~~-~--~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~c 196 (461)
.++++|+++... ...+|. .+..+++|++|+|+++ .+.. + .+..+++|++|+|.++.+..- ....+.++
T Consensus 37 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-----~l~~i~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l 108 (270)
T 2o6q_A 37 ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDN-----KLQTLPAGIFKELKNLETLWVTDNKLQAL--PIGVFDQL 108 (270)
T ss_dssp TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSS-----CCSCCCTTTTSSCTTCCEEECCSSCCCCC--CTTTTTTC
T ss_pred CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCC-----ccCeeChhhhcCCCCCCEEECCCCcCCcC--CHhHcccc
Confidence 468888886554 234554 5567999999999999 5544 2 346789999999999887653 23456788
Q ss_pred ccccceEEeeeecCCceEEEE-ecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCceeeeCCCCceEEEEEE
Q 012562 197 RLLEKLILKSCSFRDFKILDI-SSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFF 275 (461)
Q Consensus 197 p~Le~L~L~~c~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~ 275 (461)
+.|+.|++.+|.+.+...-.+ ..++|++|.+..+.+...... ..-.+++|++|.++++.....
T Consensus 109 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~--------------- 172 (270)
T 2o6q_A 109 VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG-VFDKLTSLKELRLYNNQLKRV--------------- 172 (270)
T ss_dssp SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCSCC---------------
T ss_pred cCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHh-HccCCcccceeEecCCcCcEe---------------
Confidence 999999999876443221111 124555555555543110000 001234555555544322111
Q ss_pred EeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeC
Q 012562 276 DIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSM 339 (461)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 339 (461)
+ ...+..+++|+.|++++|.+..+.. ..+. .+++|+.|++..+.
T Consensus 173 --------~-------~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~-~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 173 --------P-------EGAFDKLTELKTLKLDNNQLKRVPE----GAFD-SLEKLKMLQLQENP 216 (270)
T ss_dssp --------C-------TTTTTTCTTCCEEECCSSCCSCCCT----TTTT-TCTTCCEEECCSSC
T ss_pred --------C-------hhHhccCCCcCEEECCCCcCCcCCH----HHhc-cccCCCEEEecCCC
Confidence 0 0123457888888888887653322 2233 56688888887664
No 86
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.63 E-value=9.4e-09 Score=95.75 Aligned_cols=165 Identities=18% Similarity=0.172 Sum_probs=104.9
Q ss_pred cCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEe-cC
Q 012562 143 TCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDIS-ST 220 (461)
Q Consensus 143 ~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~-~~ 220 (461)
.+++|++|+++++ .+.. +....+++|++|+|.++.+++- .. +.++++|+.|++++|.+.++.. +. .+
T Consensus 44 ~l~~L~~L~l~~~-----~i~~~~~~~~l~~L~~L~L~~n~l~~~---~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~ 112 (291)
T 1h6t_A 44 ELNSIDQIIANNS-----DIKSVQGIQYLPNVTKLFLNGNKLTDI---KP-LANLKNLGWLFLDENKVKDLSS--LKDLK 112 (291)
T ss_dssp HHHTCCEEECTTS-----CCCCCTTGGGCTTCCEEECCSSCCCCC---GG-GTTCTTCCEEECCSSCCCCGGG--GTTCT
T ss_pred hcCcccEEEccCC-----CcccChhHhcCCCCCEEEccCCccCCC---cc-cccCCCCCEEECCCCcCCCChh--hccCC
Confidence 4778999999998 6655 5677899999999999988764 22 7889999999999987655432 22 37
Q ss_pred CcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCce-eeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCC
Q 012562 221 SLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDF-AFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELC 299 (461)
Q Consensus 221 ~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~ 299 (461)
+|++|.+.+|.+.+ +.....+++|++|.++++..... .+..+++|+.+++..+.. .+ +.. +..++
T Consensus 113 ~L~~L~L~~n~i~~---~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l--~~--------~~~-l~~l~ 178 (291)
T 1h6t_A 113 KLKSLSLEHNGISD---INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQI--SD--------IVP-LAGLT 178 (291)
T ss_dssp TCCEEECTTSCCCC---CGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC--CC--------CGG-GTTCT
T ss_pred CCCEEECCCCcCCC---ChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCcc--cc--------chh-hcCCC
Confidence 89999999887522 21112578899999888654432 234556666666632211 00 111 44566
Q ss_pred CccEEEEecchhhhhccccccccCCcccCcccEEEEEEeC
Q 012562 300 EVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSM 339 (461)
Q Consensus 300 ~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 339 (461)
+|+.|++++|.+..+. .+. .+++|+.|++..+.
T Consensus 179 ~L~~L~L~~N~i~~l~------~l~-~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 179 KLQNLYLSKNHISDLR------ALA-GLKNLDVLELFSQE 211 (291)
T ss_dssp TCCEEECCSSCCCBCG------GGT-TCTTCSEEEEEEEE
T ss_pred ccCEEECCCCcCCCCh------hhc-cCCCCCEEECcCCc
Confidence 6666666666544221 122 44566666665553
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.62 E-value=2.9e-09 Score=96.13 Aligned_cols=55 Identities=13% Similarity=-0.063 Sum_probs=29.8
Q ss_pred CCccEEEEecch-hhhhccccccccCCccc-CcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEe
Q 012562 299 CEVKALKLSTAF-LRFHFVLEERGFIPNSF-NYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYF 364 (461)
Q Consensus 299 ~~l~~L~l~~~~-~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~ 364 (461)
++++.|++.+|. +..+.. ..+. .+ ++|+.|+++.+.... ++. ..+++|+.|.+..
T Consensus 179 ~~L~~L~L~~n~~l~~i~~----~~~~-~l~~~L~~L~l~~N~l~~--l~~----~~~~~L~~L~l~~ 235 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDK----DAFG-GVYSGPSLLDVSQTSVTA--LPS----KGLEHLKELIARN 235 (239)
T ss_dssp CEEEEEECTTCTTCCEECT----TTTT-TCSBCCSEEECTTCCCCC--CCC----TTCTTCSEEECTT
T ss_pred CCCCEEEcCCCCCcccCCH----HHhh-ccccCCcEEECCCCcccc--CCh----hHhccCceeeccC
Confidence 567788887773 543221 2222 44 577888775553311 111 1456777776654
No 88
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.61 E-value=5e-09 Score=96.77 Aligned_cols=211 Identities=15% Similarity=0.103 Sum_probs=117.4
Q ss_pred CcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEe-cCCcCeEEEeccCCCCCCCeE--EEEecCCe
Q 012562 171 SRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDIS-STSLKSLTLDNFGGDESGNYK--VKIACPNL 247 (461)
Q Consensus 171 ~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~--~~~~~p~L 247 (461)
++|++|+|.++.+++- ....+.+++.|+.|++++|.+.+...-.+. .++|++|.+.++.+. .+. ..-.+++|
T Consensus 28 ~~l~~L~ls~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L 102 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHL--GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ---SLALGAFSGLSSL 102 (276)
T ss_dssp TTCCEEECTTCCCCEE--CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC---EECTTTTTTCTTC
T ss_pred CCccEEECCCCccccc--CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC---ccChhhhcCCccc
Confidence 5799999999987653 222467899999999999864322111111 378999999988741 111 01257899
Q ss_pred eeEEEecCCCCc---eeeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCC
Q 012562 248 VSFNFLASWAPD---FAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIP 324 (461)
Q Consensus 248 ~~L~l~~~~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~ 324 (461)
++|.+.++.... ..+..+++|+.+++..+...... +...+..+++|+.|++++|.+..+.. ..+.
T Consensus 103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------l~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~ 170 (276)
T 2z62_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK--------LPEYFSNLTNLEHLDLSSNKIQSIYC----TDLR 170 (276)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC--------CCGGGGGCTTCCEEECCSSCCCEECG----GGGH
T ss_pred cEEECCCCCccccCchhcccCCCCCEEECcCCccceec--------CchhhccCCCCCEEECCCCCCCcCCH----HHhh
Confidence 999998854432 24667788888887433221000 12335567888888888876553321 1122
Q ss_pred cccCccc----EEEEEEeCCCcchhhHhhhhccCCCcceEEEEeccCCCccccccCcCcc--ccccceeEEEEE--eecC
Q 012562 325 NSFNYLK----SLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEGEDCDDWKISNKSIF--CLTCHLKTVELI--HVAG 396 (461)
Q Consensus 325 ~~~~~L~----~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~--~~~~~Lk~v~i~--~~~g 396 (461)
.+.+|+ +|+++.+........ . ...++|+.|++..+.-. ..++. ..+++|+.+.+. .+.+
T Consensus 171 -~l~~L~~l~l~L~ls~n~l~~~~~~---~-~~~~~L~~L~L~~n~l~-------~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 171 -VLHQMPLLNLSLDLSLNPMNFIQPG---A-FKEIRLKELALDTNQLK-------SVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp -HHHTCTTCCEEEECCSSCCCEECTT---S-SCSCCEEEEECCSSCCS-------CCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred -hhhhccccceeeecCCCcccccCcc---c-cCCCcccEEECCCCcee-------ecCHhHhcccccccEEEccCCcccc
Confidence 333444 455544432211111 1 22347777777765421 11111 124566666666 3444
Q ss_pred ChhHHHHHHHHHhc
Q 012562 397 DENELELVRFLLKN 410 (461)
Q Consensus 397 ~~~e~~~~~~ll~~ 410 (461)
....+.++...++.
T Consensus 239 ~c~~l~~l~~~~~~ 252 (276)
T 2z62_A 239 SCPRIDYLSRWLNK 252 (276)
T ss_dssp CTTTTHHHHHHHHH
T ss_pred cCCchHHHHHHHHh
Confidence 44444444444443
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.61 E-value=8.9e-09 Score=92.93 Aligned_cols=190 Identities=12% Similarity=0.013 Sum_probs=100.4
Q ss_pred CccEEEeceeccccccccC---CCccccCcccEEEeeeEE-EcChhhHHHHhhcCccccceEEee-eecCCceEEEE-ec
Q 012562 146 SLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVE-FLDHNLLHKFVSSRRLLEKLILKS-CSFRDFKILDI-SS 219 (461)
Q Consensus 146 ~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~-~~~~~~l~~l~~~cp~Le~L~L~~-c~~~~~~~~~i-~~ 219 (461)
+|++|+|+++ .+.. ..+..+++|++|+|.++. ++.- -...+.+++.|+.|++.+ +.+..+..-.+ ..
T Consensus 32 ~l~~L~l~~n-----~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i--~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l 104 (239)
T 2xwt_C 32 STQTLKLIET-----HLRTIPSHAFSNLPNISRIYVSIDVTLQQL--ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKEL 104 (239)
T ss_dssp TCCEEEEESC-----CCSEECTTTTTTCTTCCEEEEECCSSCCEE--CTTTEESCTTCCEEEEEEETTCCEECTTSEECC
T ss_pred cccEEEEeCC-----cceEECHHHccCCCCCcEEeCCCCCCccee--CHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCC
Confidence 7777877777 4433 245567777777777764 4321 112356677777777776 43322111011 12
Q ss_pred CCcCeEEEeccCCCCCCCeEEEEecCCee---eEEEecC-CCCceeeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHH
Q 012562 220 TSLKSLTLDNFGGDESGNYKVKIACPNLV---SFNFLAS-WAPDFAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLL 295 (461)
Q Consensus 220 ~~L~~L~l~~~~~~~~~~~~~~~~~p~L~---~L~l~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l 295 (461)
++|++|.+.++.+.. +...-..++|+ +|.++++ ..... + ...+
T Consensus 105 ~~L~~L~l~~n~l~~---lp~~~~l~~L~~L~~L~l~~N~~l~~i-----------------------~-------~~~~ 151 (239)
T 2xwt_C 105 PLLKFLGIFNTGLKM---FPDLTKVYSTDIFFILEITDNPYMTSI-----------------------P-------VNAF 151 (239)
T ss_dssp TTCCEEEEEEECCCS---CCCCTTCCBCCSEEEEEEESCTTCCEE-----------------------C-------TTTT
T ss_pred CCCCEEeCCCCCCcc---ccccccccccccccEEECCCCcchhhc-----------------------C-------cccc
Confidence 455555555554311 11001223333 5555443 11110 0 0123
Q ss_pred hcCCCcc-EEEEecchhhhhccccccccCCcccCcccEEEEEEeC-CCcchhhHhhhhccC-CCcceEEEEeccCCCccc
Q 012562 296 NELCEVK-ALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSM-ADWVVPSIISLLNCS-PNLEALTIYFEGEDCDDW 372 (461)
Q Consensus 296 ~~l~~l~-~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-~~~~~l~~~~lL~~~-p~L~~L~l~~~~~~~~~~ 372 (461)
.++++++ .|+++++.+..+... .+. . .+|++|++..+. .. ..... .+..+ ++|+.|++..+.-
T Consensus 152 ~~l~~L~~~L~l~~n~l~~i~~~----~~~-~-~~L~~L~L~~n~~l~-~i~~~--~~~~l~~~L~~L~l~~N~l----- 217 (239)
T 2xwt_C 152 QGLCNETLTLKLYNNGFTSVQGY----AFN-G-TKLDAVYLNKNKYLT-VIDKD--AFGGVYSGPSLLDVSQTSV----- 217 (239)
T ss_dssp TTTBSSEEEEECCSCCCCEECTT----TTT-T-CEEEEEECTTCTTCC-EECTT--TTTTCSBCCSEEECTTCCC-----
T ss_pred cchhcceeEEEcCCCCCcccCHh----hcC-C-CCCCEEEcCCCCCcc-cCCHH--HhhccccCCcEEECCCCcc-----
Confidence 4678899 999988876533221 122 2 588999887663 32 22122 45677 9999999887543
Q ss_pred cccCcCccccccceeEEEEE
Q 012562 373 KISNKSIFCLTCHLKTVELI 392 (461)
Q Consensus 373 ~~~~~~~~~~~~~Lk~v~i~ 392 (461)
... +...+.+|+.+.+.
T Consensus 218 --~~l-~~~~~~~L~~L~l~ 234 (239)
T 2xwt_C 218 --TAL-PSKGLEHLKELIAR 234 (239)
T ss_dssp --CCC-CCTTCTTCSEEECT
T ss_pred --ccC-ChhHhccCceeecc
Confidence 123 22245677777654
No 90
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.61 E-value=1.1e-09 Score=101.14 Aligned_cols=189 Identities=16% Similarity=0.142 Sum_probs=124.0
Q ss_pred cCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEE-ecC
Q 012562 143 TCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDI-SST 220 (461)
Q Consensus 143 ~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i-~~~ 220 (461)
.+++|+.|.++++ .+.. +....+++|++|+|.++.+.+- . .+..++.|++|++++|.+.+...-.+ ..+
T Consensus 39 ~l~~L~~L~l~~~-----~i~~~~~l~~l~~L~~L~l~~n~l~~~---~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 109 (272)
T 3rfs_A 39 ELNSIDQIIANNS-----DIKSVQGIQYLPNVRYLALGGNKLHDI---S-ALKELTNLTYLILTGNQLQSLPNGVFDKLT 109 (272)
T ss_dssp HHTTCCEEECTTS-----CCCCCTTGGGCTTCCEEECTTSCCCCC---G-GGTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred cccceeeeeeCCC-----CcccccccccCCCCcEEECCCCCCCCc---h-hhcCCCCCCEEECCCCccCccChhHhcCCc
Confidence 4678888888888 6655 5677889999999998887653 2 46788999999998886544322111 137
Q ss_pred CcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCcee---eeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhc
Q 012562 221 SLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFA---FEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNE 297 (461)
Q Consensus 221 ~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~ 297 (461)
+|++|.+..|.+..... ...-.+++|++|.++++...... +..+++|+.+++..+.. ...+ ...+..
T Consensus 110 ~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~~~-------~~~~~~ 179 (272)
T 3rfs_A 110 NLKELVLVENQLQSLPD-GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL--QSLP-------EGVFDK 179 (272)
T ss_dssp TCCEEECTTSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC--CCCC-------TTTTTT
T ss_pred CCCEEECCCCcCCccCH-HHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCc--CccC-------HHHhcC
Confidence 88889988887521111 00124688999999886544332 46678888888854322 1111 123457
Q ss_pred CCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEec
Q 012562 298 LCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFE 365 (461)
Q Consensus 298 l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~ 365 (461)
+++|+.|++++|.+..+.. ..+. .+++|+.|++..+. +...||+|+.|.+..+
T Consensus 180 l~~L~~L~L~~N~l~~~~~----~~~~-~l~~L~~L~l~~N~----------~~~~~~~l~~l~~~~n 232 (272)
T 3rfs_A 180 LTQLKDLRLYQNQLKSVPD----GVFD-RLTSLQYIWLHDNP----------WDCTCPGIRYLSEWIN 232 (272)
T ss_dssp CTTCCEEECCSSCCSCCCT----TTTT-TCTTCCEEECCSSC----------BCCCTTTTHHHHHHHH
T ss_pred CccCCEEECCCCcCCccCH----HHHh-CCcCCCEEEccCCC----------ccccCcHHHHHHHHHH
Confidence 8899999999987663322 2233 66799999997663 3345777777765544
No 91
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.57 E-value=1.7e-08 Score=92.54 Aligned_cols=146 Identities=16% Similarity=0.130 Sum_probs=87.7
Q ss_pred cccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEec
Q 012562 141 LVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDISS 219 (461)
Q Consensus 141 l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~ 219 (461)
+..+++|++|+++++ .+.. +....+++|++|+|.++.+++- .. +.+++.|+.|++++|.+.++.... .
T Consensus 37 ~~~l~~L~~L~l~~n-----~i~~l~~l~~l~~L~~L~L~~N~i~~~---~~-l~~l~~L~~L~L~~N~l~~l~~~~--~ 105 (263)
T 1xeu_A 37 QKELSGVQNFNGDNS-----NIQSLAGMQFFTNLKELHLSHNQISDL---SP-LKDLTKLEELSVNRNRLKNLNGIP--S 105 (263)
T ss_dssp HHHHTTCSEEECTTS-----CCCCCTTGGGCTTCCEEECCSSCCCCC---GG-GTTCSSCCEEECCSSCCSCCTTCC--C
T ss_pred hhhcCcCcEEECcCC-----CcccchHHhhCCCCCEEECCCCccCCC---hh-hccCCCCCEEECCCCccCCcCccc--c
Confidence 345788999999988 6555 5667888999999998888764 22 778899999999888754432211 1
Q ss_pred CCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCceeeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCC
Q 012562 220 TSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELC 299 (461)
Q Consensus 220 ~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~ 299 (461)
++|+.|.+.+|.+.+ +...-.+++|+.|+++++..... ..+..++
T Consensus 106 ~~L~~L~L~~N~l~~---~~~l~~l~~L~~L~Ls~N~i~~~--------------------------------~~l~~l~ 150 (263)
T 1xeu_A 106 ACLSRLFLDNNELRD---TDSLIHLKNLEILSIRNNKLKSI--------------------------------VMLGFLS 150 (263)
T ss_dssp SSCCEEECCSSCCSB---SGGGTTCTTCCEEECTTSCCCBC--------------------------------GGGGGCT
T ss_pred CcccEEEccCCccCC---ChhhcCcccccEEECCCCcCCCC--------------------------------hHHccCC
Confidence 556666666555311 11011344555555544322211 1234567
Q ss_pred CccEEEEecchhhhhccccccccCCcccCcccEEEEEEeC
Q 012562 300 EVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSM 339 (461)
Q Consensus 300 ~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 339 (461)
+|+.|++++|.+..+ ..+. .+++|+.|++..+.
T Consensus 151 ~L~~L~L~~N~i~~~------~~l~-~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 151 KLEVLDLHGNEITNT------GGLT-RLKKVNWIDLTGQK 183 (263)
T ss_dssp TCCEEECTTSCCCBC------TTST-TCCCCCEEEEEEEE
T ss_pred CCCEEECCCCcCcch------HHhc-cCCCCCEEeCCCCc
Confidence 777777777665432 2223 45577777776654
No 92
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.53 E-value=3.3e-09 Score=99.96 Aligned_cols=195 Identities=17% Similarity=0.093 Sum_probs=130.0
Q ss_pred HhcCCeEEEEEEcceeeeCCCCc--ccCCCccEEEeceeccccccccC-C-Ccccc-----CcccEEEeeeEEEcChhhH
Q 012562 119 ARRNVQVFDLTVYGEVTELPHCL--VTCESLEALKLACRQLRMCVLKL-P-FSVGF-----SRLKSLDLHNVEFLDHNLL 189 (461)
Q Consensus 119 ~~~~l~~L~l~~~~~~~~lp~~l--~~~~~L~~L~L~~~~~~~~~l~~-~-~~~~l-----~~L~~L~L~~~~~~~~~~l 189 (461)
...++++|+++.......+|..+ ..+++|++|+|+++ .+.. | .+..+ ++|++|+|.++.+.+. .
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-----~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~--~ 165 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-----SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF--S 165 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-----BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCC--C
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-----CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccc--h
Confidence 35689999998876566778876 57999999999999 5544 2 23344 8999999999988653 2
Q ss_pred HHHhhcCccccceEEeeeecCCce----EEE-EecCCcCeEEEeccCCCCCCCeE--EEEecCCeeeEEEecCCCCc---
Q 012562 190 HKFVSSRRLLEKLILKSCSFRDFK----ILD-ISSTSLKSLTLDNFGGDESGNYK--VKIACPNLVSFNFLASWAPD--- 259 (461)
Q Consensus 190 ~~l~~~cp~Le~L~L~~c~~~~~~----~~~-i~~~~L~~L~l~~~~~~~~~~~~--~~~~~p~L~~L~l~~~~~~~--- 259 (461)
...+.++++|++|++++|...+.. ... -..++|++|.+.+|.+....... +.-..++|++|+++++....
T Consensus 166 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 245 (312)
T 1wwl_A 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245 (312)
T ss_dssp TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC
T ss_pred HHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc
Confidence 245678999999999998643210 000 12378999999988852111111 11145899999999865544
Q ss_pred -eeeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEe
Q 012562 260 -FAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVS 338 (461)
Q Consensus 260 -~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 338 (461)
..+..+++|+.++++-+.. ...|. .+ .++|+.|++++|.+..+. . +. .+++|++|++..+
T Consensus 246 ~~~~~~l~~L~~L~Ls~N~l--~~ip~--------~~--~~~L~~L~Ls~N~l~~~p-----~-~~-~l~~L~~L~L~~N 306 (312)
T 1wwl_A 246 APSCDWPSQLNSLNLSFTGL--KQVPK--------GL--PAKLSVLDLSYNRLDRNP-----S-PD-ELPQVGNLSLKGN 306 (312)
T ss_dssp CSCCCCCTTCCEEECTTSCC--SSCCS--------SC--CSEEEEEECCSSCCCSCC-----C-TT-TSCEEEEEECTTC
T ss_pred hhhhhhcCCCCEEECCCCcc--Chhhh--------hc--cCCceEEECCCCCCCCCh-----h-Hh-hCCCCCEEeccCC
Confidence 2344568899999843322 11111 01 168999999999876431 1 33 5668999988665
Q ss_pred C
Q 012562 339 M 339 (461)
Q Consensus 339 ~ 339 (461)
.
T Consensus 307 ~ 307 (312)
T 1wwl_A 307 P 307 (312)
T ss_dssp T
T ss_pred C
Confidence 4
No 93
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.51 E-value=5.5e-09 Score=107.11 Aligned_cols=146 Identities=22% Similarity=0.172 Sum_probs=94.8
Q ss_pred hcCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCcc
Q 012562 120 RRNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRL 198 (461)
Q Consensus 120 ~~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~ 198 (461)
.++++.|+|+.+. ...+|. +..+++|+.|+|++| .+.. +.+..+++|++|+|.++.+.+- . -+..+|+
T Consensus 64 l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-----~l~~l~~l~~l~~L~~L~Ls~N~l~~l---~-~l~~l~~ 132 (605)
T 1m9s_A 64 LPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDEN-----KIKDLSSLKDLKKLKSLSLEHNGISDI---N-GLVHLPQ 132 (605)
T ss_dssp CTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSS-----CCCCCTTSTTCTTCCEEECTTSCCCCC---G-GGGGCTT
T ss_pred CCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCC-----CCCCChhhccCCCCCEEEecCCCCCCC---c-cccCCCc
Confidence 3689999985543 223444 667999999999999 6666 5677899999999999988753 2 2678999
Q ss_pred ccceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCceeeeCCCCceEEEEEEEee
Q 012562 199 LEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFFDII 278 (461)
Q Consensus 199 Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~ 278 (461)
|+.|+|++|.+.++..+ -..++|+.|.+..|.+.+.. . .-.+++|+.|.++++....
T Consensus 133 L~~L~Ls~N~l~~l~~l-~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~i~~------------------- 189 (605)
T 1m9s_A 133 LESLYLGNNKITDITVL-SRLTKLDTLSLEDNQISDIV--P-LAGLTKLQNLYLSKNHISD------------------- 189 (605)
T ss_dssp CSEEECCSSCCCCCGGG-GSCTTCSEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCB-------------------
T ss_pred cCEEECCCCccCCchhh-cccCCCCEEECcCCcCCCch--h-hccCCCCCEEECcCCCCCC-------------------
Confidence 99999999875543100 01256666666665531111 1 1134555555555432211
Q ss_pred cCCCCchhhHHHHHHHHhcCCCccEEEEecchhh
Q 012562 279 DRDERDNESCHILSKLLNELCEVKALKLSTAFLR 312 (461)
Q Consensus 279 ~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~ 312 (461)
+ ..+..+++|+.|+|++|.+.
T Consensus 190 ------------l-~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 190 ------------L-RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp ------------C-GGGTTCTTCSEEECCSEEEE
T ss_pred ------------C-hHHccCCCCCEEEccCCcCc
Confidence 1 12456889999999988754
No 94
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.50 E-value=3.5e-09 Score=98.62 Aligned_cols=189 Identities=16% Similarity=0.088 Sum_probs=99.0
Q ss_pred CCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCcc
Q 012562 122 NVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRL 198 (461)
Q Consensus 122 ~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~ 198 (461)
+++++++... ....+|..+. ++|+.|+|+++ .+.. ..+..+++|++|+|.++.++.-.. ...++.
T Consensus 11 ~l~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~N-----~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~l~~ 78 (290)
T 1p9a_G 11 SHLEVNCDKR-NLTALPPDLP--KDTTILHLSEN-----LLYTFSLATLMPYTRLTQLNLDRAELTKLQV----DGTLPV 78 (290)
T ss_dssp TCCEEECTTS-CCSSCCSCCC--TTCCEEECTTS-----CCSEEEGGGGTTCTTCCEEECTTSCCCEEEC----CSCCTT
T ss_pred CccEEECCCC-CCCcCCCCCC--CCCCEEEcCCC-----cCCccCHHHhhcCCCCCEEECCCCccCcccC----CCCCCc
Confidence 3455555322 2334555443 57888888888 4433 245667888888888776654311 156788
Q ss_pred ccceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCcee---eeCCCCceEEEEEE
Q 012562 199 LEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFA---FEDLDSLQNAFIFF 275 (461)
Q Consensus 199 Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~l~l~~ 275 (461)
|+.|++++|.+..+.......++|+.|.+..+.+..... ...-.+++|++|.++++...... +..+++|+.+++..
T Consensus 79 L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL-GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp CCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCS-STTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCH-HHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence 888888887654332211123678888888776421110 01124678888888885443322 23445555555522
Q ss_pred EeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEe
Q 012562 276 DIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVS 338 (461)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 338 (461)
+.. ...+ ...+..+++|+.|.+++|.+..+.. .+. ...+|++|.+..+
T Consensus 158 N~l--~~l~-------~~~~~~l~~L~~L~L~~N~l~~ip~-----~~~-~~~~L~~l~L~~N 205 (290)
T 1p9a_G 158 NNL--TELP-------AGLLNGLENLDTLLLQENSLYTIPK-----GFF-GSHLLPFAFLHGN 205 (290)
T ss_dssp SCC--SCCC-------TTTTTTCTTCCEEECCSSCCCCCCT-----TTT-TTCCCSEEECCSC
T ss_pred CcC--CccC-------HHHhcCcCCCCEEECCCCcCCccCh-----hhc-ccccCCeEEeCCC
Confidence 111 0000 1122345666666666665442221 111 3335666666444
No 95
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.43 E-value=2.6e-08 Score=91.27 Aligned_cols=164 Identities=12% Similarity=0.023 Sum_probs=114.4
Q ss_pred CCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEe-cCC
Q 012562 144 CESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDIS-STS 221 (461)
Q Consensus 144 ~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~-~~~ 221 (461)
+.+++.++++.+ .+.. +....+++|++|++.++.+++- . -+..+++|+.|++++|.+.+... +. .++
T Consensus 18 l~~l~~l~l~~~-----~i~~~~~~~~l~~L~~L~l~~n~i~~l---~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~ 86 (263)
T 1xeu_A 18 LANAVKQNLGKQ-----SVTDLVSQKELSGVQNFNGDNSNIQSL---A-GMQFFTNLKELHLSHNQISDLSP--LKDLTK 86 (263)
T ss_dssp HHHHHHHHHTCS-----CTTSEECHHHHTTCSEEECTTSCCCCC---T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSS
T ss_pred HHHHHHHHhcCC-----CcccccchhhcCcCcEEECcCCCcccc---h-HHhhCCCCCEEECCCCccCCChh--hccCCC
Confidence 445667777777 5555 4567899999999999988754 2 36789999999999987665543 22 377
Q ss_pred cCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCceeeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCc
Q 012562 222 LKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEV 301 (461)
Q Consensus 222 L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l 301 (461)
|+.|.+.+|.+.+..... . ++|++|.++++..... ..+..+++|
T Consensus 87 L~~L~L~~N~l~~l~~~~---~-~~L~~L~L~~N~l~~~--------------------------------~~l~~l~~L 130 (263)
T 1xeu_A 87 LEELSVNRNRLKNLNGIP---S-ACLSRLFLDNNELRDT--------------------------------DSLIHLKNL 130 (263)
T ss_dssp CCEEECCSSCCSCCTTCC---C-SSCCEEECCSSCCSBS--------------------------------GGGTTCTTC
T ss_pred CCEEECCCCccCCcCccc---c-CcccEEEccCCccCCC--------------------------------hhhcCcccc
Confidence 888888887753222211 1 7777777777533221 114568899
Q ss_pred cEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEecc
Q 012562 302 KALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEG 366 (461)
Q Consensus 302 ~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~~ 366 (461)
+.|++++|.+..+. .+. .+++|++|+++.+..... . .+..+++|+.|++..+.
T Consensus 131 ~~L~Ls~N~i~~~~------~l~-~l~~L~~L~L~~N~i~~~--~---~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 131 EILSIRNNKLKSIV------MLG-FLSKLEVLDLHGNEITNT--G---GLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CEEECTTSCCCBCG------GGG-GCTTCCEEECTTSCCCBC--T---TSTTCCCCCEEEEEEEE
T ss_pred cEEECCCCcCCCCh------HHc-cCCCCCEEECCCCcCcch--H---HhccCCCCCEEeCCCCc
Confidence 99999998866432 233 567999999977755322 2 56889999999999875
No 96
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.43 E-value=5.5e-08 Score=96.49 Aligned_cols=133 Identities=14% Similarity=0.068 Sum_probs=77.8
Q ss_pred cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccc
Q 012562 121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLL 199 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~L 199 (461)
.++++|+++.+.. ..+| .+..+++|++|++++| .+.. |. ..++|++|+|.++.+.+- . -+.+++.|
T Consensus 131 ~~L~~L~L~~n~l-~~lp-~~~~l~~L~~L~l~~N-----~l~~lp~--~~~~L~~L~L~~n~l~~l---~-~~~~l~~L 197 (454)
T 1jl5_A 131 PLLEYLGVSNNQL-EKLP-ELQNSSFLKIIDVDNN-----SLKKLPD--LPPSLEFIAAGNNQLEEL---P-ELQNLPFL 197 (454)
T ss_dssp TTCCEEECCSSCC-SSCC-CCTTCTTCCEEECCSS-----CCSCCCC--CCTTCCEEECCSSCCSSC---C-CCTTCTTC
T ss_pred CCCCEEECcCCCC-CCCc-ccCCCCCCCEEECCCC-----cCcccCC--CcccccEEECcCCcCCcC---c-cccCCCCC
Confidence 4677777754432 2366 4666788888888887 4443 21 235788888887766542 2 25677888
Q ss_pred cceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCceeeeCCCCceEEEE
Q 012562 200 EKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFI 273 (461)
Q Consensus 200 e~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~l~l 273 (461)
+.|++++|.+.++.. ..++|+.|.+.+|.+. .+.....+++|++|.++++....+. ...++|+.+++
T Consensus 198 ~~L~l~~N~l~~l~~---~~~~L~~L~l~~n~l~---~lp~~~~l~~L~~L~l~~N~l~~l~-~~~~~L~~L~l 264 (454)
T 1jl5_A 198 TAIYADNNSLKKLPD---LPLSLESIVAGNNILE---ELPELQNLPFLTTIYADNNLLKTLP-DLPPSLEALNV 264 (454)
T ss_dssp CEEECCSSCCSSCCC---CCTTCCEEECCSSCCS---SCCCCTTCTTCCEEECCSSCCSSCC-SCCTTCCEEEC
T ss_pred CEEECCCCcCCcCCC---CcCcccEEECcCCcCC---cccccCCCCCCCEEECCCCcCCccc-ccccccCEEEC
Confidence 888888876544221 1257777777777642 2221115667777777764433221 12355666655
No 97
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.43 E-value=9.3e-08 Score=98.89 Aligned_cols=127 Identities=16% Similarity=0.106 Sum_probs=69.4
Q ss_pred CCeEEEEEEcceeeeCCC-CcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCc
Q 012562 122 NVQVFDLTVYGEVTELPH-CLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR 197 (461)
Q Consensus 122 ~l~~L~l~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp 197 (461)
.+++|+|+.+. ...+|+ .+..+++|++|+|++| .+.. ..+..+++|++|+|.+|.++.- -...+.+++
T Consensus 53 ~~~~LdLs~N~-i~~l~~~~f~~l~~L~~L~Ls~N-----~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l--~~~~f~~L~ 124 (635)
T 4g8a_A 53 STKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRC-----EIQTIEDGAYQSLSHLSTLILTGNPIQSL--ALGAFSGLS 124 (635)
T ss_dssp TCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTC-----CCCEECTTTTTTCTTCCEEECTTCCCCEE--CGGGGTTCT
T ss_pred CCCEEEeeCCC-CCCCCHHHHhCCCCCCEEECCCC-----cCCCcChhHhcCCCCCCEEEccCCcCCCC--CHHHhcCCC
Confidence 56777775544 234443 3445777777777777 4433 2456677777777777765431 123456777
Q ss_pred cccceEEeeeecCCceEEEEe-cCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCC
Q 012562 198 LLEKLILKSCSFRDFKILDIS-STSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASW 256 (461)
Q Consensus 198 ~Le~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 256 (461)
+|++|+|++|.+.++....+. .++|++|.+..+.+.........-.+++|++|.++++.
T Consensus 125 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 125 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 777777777654443322222 25666666666553111100111134566666666543
No 98
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.42 E-value=1.6e-08 Score=85.78 Aligned_cols=128 Identities=21% Similarity=0.161 Sum_probs=80.2
Q ss_pred cCCeEEEEEEccee-eeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCcc
Q 012562 121 RNVQVFDLTVYGEV-TELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRL 198 (461)
Q Consensus 121 ~~l~~L~l~~~~~~-~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~ 198 (461)
+++++|++...... ..+|..+..+++|++|+|++| .+.. +.+..+++|++|+|.++.+.+ .+..++.++|.
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n-----~l~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~ 96 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-----GLISVSNLPKLPKLKKLELSENRIFG--GLDMLAEKLPN 96 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS-----CCCCCSSCCCCSSCCEEEEESCCCCS--CCCHHHHHCTT
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC-----CCCChhhhccCCCCCEEECcCCcCch--HHHHHHhhCCC
Confidence 46888888655422 367777777888999999888 5444 456678889999998888876 24566677889
Q ss_pred ccceEEeeeecCCceEE-EE-ecCCcCeEEEeccCCCCCCCe--EEEEecCCeeeEEEecC
Q 012562 199 LEKLILKSCSFRDFKIL-DI-SSTSLKSLTLDNFGGDESGNY--KVKIACPNLVSFNFLAS 255 (461)
Q Consensus 199 Le~L~L~~c~~~~~~~~-~i-~~~~L~~L~l~~~~~~~~~~~--~~~~~~p~L~~L~l~~~ 255 (461)
|+.|++++|.+.++..+ .+ ..++|+.|.+..|.+...... ...-.+|+|++|++.++
T Consensus 97 L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 97 LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 99999988875543210 11 125666666666553211110 01113556666655553
No 99
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.41 E-value=7e-08 Score=90.68 Aligned_cols=154 Identities=18% Similarity=0.052 Sum_probs=73.3
Q ss_pred cCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHH--HhhcCccccceEEeeeecCCceEEE-
Q 012562 143 TCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHK--FVSSRRLLEKLILKSCSFRDFKILD- 216 (461)
Q Consensus 143 ~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~--l~~~cp~Le~L~L~~c~~~~~~~~~- 216 (461)
.+++|++|+|++| .+.. ..+..+++|++|+|++|.+.+...+.. .+..+|+|++|+|++|.+..+....
T Consensus 143 ~~~~L~~L~Ls~n-----~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 217 (310)
T 4glp_A 143 LKPGLKVLSIAQA-----HSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCA 217 (310)
T ss_dssp BCSCCCEEEEECC-----SSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHH
T ss_pred hccCCCEEEeeCC-----CcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHH
Confidence 3556666666666 3332 133456666666666655433211211 1234566666666665443221110
Q ss_pred ---EecCCcCeEEEeccCCCCCCCeEE--EEecCCeeeEEEecCCCCceeeeCCCCceEEEEEEEeecCCCCchhhHHHH
Q 012562 217 ---ISSTSLKSLTLDNFGGDESGNYKV--KIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFFDIIDRDERDNESCHIL 291 (461)
Q Consensus 217 ---i~~~~L~~L~l~~~~~~~~~~~~~--~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 291 (461)
-..++|++|++++|.+.+.....+ ....++|++|.++++....+.-.-.++|+.++++.+... . +
T Consensus 218 ~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~--~--------~ 287 (310)
T 4glp_A 218 ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLN--R--------A 287 (310)
T ss_dssp HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCCSCCSCEECCSCCCC--S--------C
T ss_pred HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhcCCCCEEECCCCcCC--C--------C
Confidence 012556666666555421111000 001256666666664443322112356666666433221 0 0
Q ss_pred HHHHhcCCCccEEEEecchhh
Q 012562 292 SKLLNELCEVKALKLSTAFLR 312 (461)
Q Consensus 292 ~~~l~~l~~l~~L~l~~~~~~ 312 (461)
..+..+++++.|++++|.+.
T Consensus 288 -~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 288 -PQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp -CCTTSCCCCSCEECSSTTTS
T ss_pred -chhhhCCCccEEECcCCCCC
Confidence 11346788999999888654
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.41 E-value=2e-07 Score=81.32 Aligned_cols=142 Identities=15% Similarity=0.145 Sum_probs=92.6
Q ss_pred cccEEEEEEeccCCchhHHHHHHHHHhcCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC---CCcccc
Q 012562 94 SIQRFRLYCLSYANDYTVYRWVCAVARRNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL---PFSVGF 170 (461)
Q Consensus 94 ~i~~l~l~~~~~~~~~~~~~wi~~~~~~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l 170 (461)
.++.+.+.......-.. ....+++++|+++.. ....+..+..+++|++|++++| .+.. ..+..+
T Consensus 45 ~L~~L~l~~n~i~~l~~------l~~l~~L~~L~l~~n--~~~~~~~l~~l~~L~~L~l~~n-----~l~~~~~~~l~~l 111 (197)
T 4ezg_A 45 SLTYITLANINVTDLTG------IEYAHNIKDLTINNI--HATNYNPISGLSNLERLRIMGK-----DVTSDKIPNLSGL 111 (197)
T ss_dssp TCCEEEEESSCCSCCTT------GGGCTTCSEEEEESC--CCSCCGGGTTCTTCCEEEEECT-----TCBGGGSCCCTTC
T ss_pred CccEEeccCCCccChHH------HhcCCCCCEEEccCC--CCCcchhhhcCCCCCEEEeECC-----ccCcccChhhcCC
Confidence 46667666543221111 112257999999765 2333446677999999999999 5543 456789
Q ss_pred CcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeee-cCCceEEEEe-cCCcCeEEEeccCCCCCCCeEEEEecCCee
Q 012562 171 SRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCS-FRDFKILDIS-STSLKSLTLDNFGGDESGNYKVKIACPNLV 248 (461)
Q Consensus 171 ~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~-~~~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~ 248 (461)
++|++|+|.++.+++. ....+..++.|+.|++++|. ...+. .+. .++|+.|.+..|.+.+... .-.+|+|+
T Consensus 112 ~~L~~L~Ls~n~i~~~--~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~~---l~~l~~L~ 184 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDS--ILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYRG---IEDFPKLN 184 (197)
T ss_dssp TTCCEEECCSSBCBGG--GHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCTT---GGGCSSCC
T ss_pred CCCCEEEecCCccCcH--hHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChHH---hccCCCCC
Confidence 9999999999998874 34457889999999999986 44432 111 3667777777766422111 11456677
Q ss_pred eEEEecC
Q 012562 249 SFNFLAS 255 (461)
Q Consensus 249 ~L~l~~~ 255 (461)
+|.+.++
T Consensus 185 ~L~l~~N 191 (197)
T 4ezg_A 185 QLYAFSQ 191 (197)
T ss_dssp EEEECBC
T ss_pred EEEeeCc
Confidence 7766664
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.41 E-value=6.3e-09 Score=94.67 Aligned_cols=160 Identities=17% Similarity=0.119 Sum_probs=84.9
Q ss_pred eeCCCCcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCC
Q 012562 135 TELPHCLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRD 211 (461)
Q Consensus 135 ~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~ 211 (461)
..+|..+. ++|+.|+|+++ .+.. ..+..+++|++|+|.++.+.+. ....+.+++.|+.|+|++|.+.+
T Consensus 27 ~~~p~~~~--~~l~~L~L~~n-----~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~ 97 (251)
T 3m19_A 27 DSVPSGIP--ADTEKLDLQST-----GLATLSDATFRGLTKLTWLNLDYNQLQTL--SAGVFDDLTELGTLGLANNQLAS 97 (251)
T ss_dssp SSCCSCCC--TTCCEEECTTS-----CCCCCCTTTTTTCTTCCEEECTTSCCCCC--CTTTTTTCTTCCEEECTTSCCCC
T ss_pred cccCCCCC--CCCCEEEccCC-----CcCccCHhHhcCcccCCEEECCCCcCCcc--CHhHhccCCcCCEEECCCCcccc
Confidence 34555443 47888888887 5444 2456678888888887776652 23345677788888887765432
Q ss_pred ceEEEE-ecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCceeeeCCCCceEEEEEEEeecCCCCchhhHHH
Q 012562 212 FKILDI-SSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFFDIIDRDERDNESCHI 290 (461)
Q Consensus 212 ~~~~~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 290 (461)
...-.+ ..++|++|.+.++.+..... ...-..++|++|.++++..... +
T Consensus 98 ~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~-----------------------~------ 147 (251)
T 3m19_A 98 LPLGVFDHLTQLDKLYLGGNQLKSLPS-GVFDRLTKLKELRLNTNQLQSI-----------------------P------ 147 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCC-----------------------C------
T ss_pred cChhHhcccCCCCEEEcCCCcCCCcCh-hHhccCCcccEEECcCCcCCcc-----------------------C------
Confidence 211000 11445555555444210000 0001234455555544322211 0
Q ss_pred HHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeC
Q 012562 291 LSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSM 339 (461)
Q Consensus 291 ~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 339 (461)
...+..+++|+.|++++|.+..+.. ..+. .+++|++|++..+.
T Consensus 148 -~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~-~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 148 -AGAFDKLTNLQTLSLSTNQLQSVPH----GAFD-RLGKLQTITLFGNQ 190 (251)
T ss_dssp -TTTTTTCTTCCEEECCSSCCSCCCT----TTTT-TCTTCCEEECCSCC
T ss_pred -HHHcCcCcCCCEEECCCCcCCccCH----HHHh-CCCCCCEEEeeCCc
Confidence 0123456788888888887653322 2233 55688888887664
No 102
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.38 E-value=1e-08 Score=85.12 Aligned_cols=104 Identities=22% Similarity=0.140 Sum_probs=73.3
Q ss_pred cCCeEEEEEEccee-eeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCcc
Q 012562 121 RNVQVFDLTVYGEV-TELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRL 198 (461)
Q Consensus 121 ~~l~~L~l~~~~~~-~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~ 198 (461)
+++++|+++..... ..+|..+..+++|++|++++| .+.. +.+..+++|++|+|+++.+++ .+...+.+++.
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-----~l~~~~~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~ 89 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-----GLTSIANLPKLNKLKKLELSDNRVSG--GLEVLAEKCPN 89 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-----CCCCCTTCCCCTTCCEEECCSSCCCS--CTHHHHHHCTT
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-----CCCCchhhhcCCCCCEEECCCCcccc--hHHHHhhhCCC
Confidence 46888888555433 467877778999999999999 5544 566778999999999998876 36677778999
Q ss_pred ccceEEeeeecCCceE-EEE-ecCCcCeEEEeccC
Q 012562 199 LEKLILKSCSFRDFKI-LDI-SSTSLKSLTLDNFG 231 (461)
Q Consensus 199 Le~L~L~~c~~~~~~~-~~i-~~~~L~~L~l~~~~ 231 (461)
|+.|++++|.+.+... ..+ ..++|++|.+.+|.
T Consensus 90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc
Confidence 9999999987554321 011 12455555555554
No 103
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.37 E-value=3.5e-08 Score=89.74 Aligned_cols=130 Identities=18% Similarity=0.099 Sum_probs=84.9
Q ss_pred cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC--C-CccccCcccEEEeeeEEEcChhhHHHHhhcCc
Q 012562 121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL--P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR 197 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~--~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp 197 (461)
.+++.|++.........|..+..+++|++|+|+++ .+.. + .+..+++|++|+|.++.++.- ....+.+++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-----~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~ 107 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-----QLQTLSAGVFDDLTELGTLGLANNQLASL--PLGVFDHLT 107 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-----CCCCCCTTTTTTCTTCCEEECTTSCCCCC--CTTTTTTCT
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-----cCCccCHhHhccCCcCCEEECCCCccccc--ChhHhcccC
Confidence 36777887554433333445666889999999998 5554 2 356788999999998887652 334567889
Q ss_pred cccceEEeeeecCCceEEEE-ecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCC
Q 012562 198 LLEKLILKSCSFRDFKILDI-SSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAP 258 (461)
Q Consensus 198 ~Le~L~L~~c~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~ 258 (461)
+|+.|+|++|.+.++..-.+ ..++|+.|.+.+|.+...... ..-.+++|++|+++++...
T Consensus 108 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAG-AFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCS
T ss_pred CCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHH-HcCcCcCCCEEECCCCcCC
Confidence 99999999886554322111 137889999988875211110 0114678888888875443
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.36 E-value=1.2e-07 Score=96.25 Aligned_cols=191 Identities=11% Similarity=0.011 Sum_probs=110.9
Q ss_pred hcCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCcc
Q 012562 120 RRNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRL 198 (461)
Q Consensus 120 ~~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~ 198 (461)
..+++.|++.... ...+|..++ ++|++|+|++| .+.. | ..+++|++|+|.+|.+++- .. +.+ +
T Consensus 58 ~~~L~~L~Ls~n~-L~~lp~~l~--~~L~~L~Ls~N-----~l~~ip--~~l~~L~~L~Ls~N~l~~i---p~-l~~--~ 121 (571)
T 3cvr_A 58 INQFSELQLNRLN-LSSLPDNLP--PQITVLEITQN-----ALISLP--ELPASLEYLDACDNRLSTL---PE-LPA--S 121 (571)
T ss_dssp HTTCSEEECCSSC-CSCCCSCCC--TTCSEEECCSS-----CCSCCC--CCCTTCCEEECCSSCCSCC---CC-CCT--T
T ss_pred cCCccEEEeCCCC-CCccCHhHc--CCCCEEECcCC-----CCcccc--cccCCCCEEEccCCCCCCc---ch-hhc--C
Confidence 3478888885543 233776654 67888888888 5554 4 4578888888888877642 22 222 7
Q ss_pred ccceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCceeeeCCCCceEEEEEEEee
Q 012562 199 LEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFFDII 278 (461)
Q Consensus 199 Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~ 278 (461)
|+.|+|++|.+.++.. ..++|+.|.+.+|.+.. +.. ..++|++|.++++....+.. -.++|+.++++.+..
T Consensus 122 L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~---lp~--~l~~L~~L~Ls~N~L~~lp~-l~~~L~~L~Ls~N~L 192 (571)
T 3cvr_A 122 LKHLDVDNNQLTMLPE---LPALLEYINADNNQLTM---LPE--LPTSLEVLSVRNNQLTFLPE-LPESLEALDVSTNLL 192 (571)
T ss_dssp CCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC---CCC--CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCCCCC---cCccccEEeCCCCccCc---CCC--cCCCcCEEECCCCCCCCcch-hhCCCCEEECcCCCC
Confidence 8888888877655433 45778888888777521 221 46788888888754433211 116677777743322
Q ss_pred cCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhH
Q 012562 279 DRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSI 347 (461)
Q Consensus 279 ~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~ 347 (461)
. ..|.. .. .+....+.++.|++++|.+..+.. .+. .+++|+.|+++.|.........
T Consensus 193 ~--~lp~~-~~---~L~~~~~~L~~L~Ls~N~l~~lp~-----~l~-~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 193 E--SLPAV-PV---RNHHSEETEIFFRCRENRITHIPE-----NIL-SLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp S--SCCCC-C-----------CCEEEECCSSCCCCCCG-----GGG-GSCTTEEEECCSSSCCHHHHHH
T ss_pred C--chhhH-HH---hhhcccccceEEecCCCcceecCH-----HHh-cCCCCCEEEeeCCcCCCcCHHH
Confidence 1 11110 00 111222334888888887663322 223 4668888888777654444443
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.34 E-value=8.8e-08 Score=97.22 Aligned_cols=177 Identities=14% Similarity=-0.020 Sum_probs=122.1
Q ss_pred CCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEecCCc
Q 012562 144 CESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDISSTSL 222 (461)
Q Consensus 144 ~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~~~L 222 (461)
+.+|+.|+|+++ .+.. |.. -+++|++|+|.+|.++.- . ..+++|+.|+|++|.+.++.. +. .+|
T Consensus 58 ~~~L~~L~Ls~n-----~L~~lp~~-l~~~L~~L~Ls~N~l~~i---p---~~l~~L~~L~Ls~N~l~~ip~--l~-~~L 122 (571)
T 3cvr_A 58 INQFSELQLNRL-----NLSSLPDN-LPPQITVLEITQNALISL---P---ELPASLEYLDACDNRLSTLPE--LP-ASL 122 (571)
T ss_dssp HTTCSEEECCSS-----CCSCCCSC-CCTTCSEEECCSSCCSCC---C---CCCTTCCEEECCSSCCSCCCC--CC-TTC
T ss_pred cCCccEEEeCCC-----CCCccCHh-HcCCCCEEECcCCCCccc---c---cccCCCCEEEccCCCCCCcch--hh-cCC
Confidence 358999999999 6555 321 258999999999988743 3 568999999999998766544 32 399
Q ss_pred CeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCceeeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCcc
Q 012562 223 KSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVK 302 (461)
Q Consensus 223 ~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~ 302 (461)
+.|.+.+|.+.. +.. ..++|++|.++++....+.- .+++|+.++++.+.. ... .. +. ++|+
T Consensus 123 ~~L~Ls~N~l~~---lp~--~l~~L~~L~Ls~N~l~~lp~-~l~~L~~L~Ls~N~L--~~l--------p~-l~--~~L~ 183 (571)
T 3cvr_A 123 KHLDVDNNQLTM---LPE--LPALLEYINADNNQLTMLPE-LPTSLEVLSVRNNQL--TFL--------PE-LP--ESLE 183 (571)
T ss_dssp CEEECCSSCCSC---CCC--CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCC--SCC--------CC-CC--TTCC
T ss_pred CEEECCCCcCCC---CCC--cCccccEEeCCCCccCcCCC-cCCCcCEEECCCCCC--CCc--------ch-hh--CCCC
Confidence 999999998522 322 68999999999976554332 567899998854422 111 11 11 7899
Q ss_pred EEEEecchhhhhccccccccCCcccCcc-------cEEEEEEeCCCcchhhHhhhhccCCCcceEEEEeccC
Q 012562 303 ALKLSTAFLRFHFVLEERGFIPNSFNYL-------KSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEGE 367 (461)
Q Consensus 303 ~L~l~~~~~~~~~~~~~~~~l~~~~~~L-------~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~~~ 367 (461)
.|++++|.+..+.. ++ . +| +.|+++.|.... ++. -+..+++|+.|++..+.-
T Consensus 184 ~L~Ls~N~L~~lp~------~~-~--~L~~~~~~L~~L~Ls~N~l~~--lp~--~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 184 ALDVSTNLLESLPA------VP-V--RNHHSEETEIFFRCRENRITH--IPE--NILSLDPTCTIILEDNPL 242 (571)
T ss_dssp EEECCSSCCSSCCC------CC-----------CCEEEECCSSCCCC--CCG--GGGGSCTTEEEECCSSSC
T ss_pred EEECcCCCCCchhh------HH-H--hhhcccccceEEecCCCccee--cCH--HHhcCCCCCEEEeeCCcC
Confidence 99999997663322 32 2 55 889887775432 222 234589999999988764
No 106
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.33 E-value=2.2e-08 Score=99.37 Aligned_cols=138 Identities=16% Similarity=0.082 Sum_probs=66.4
Q ss_pred ccccceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCceeeeCCCCceEEEEEEE
Q 012562 197 RLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFFD 276 (461)
Q Consensus 197 p~Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~ 276 (461)
+.|+.|++++|.+.++... .++|++|.+.+|.+. .+...-.+++|++|+++++....+. ...++|+.+++..+
T Consensus 111 ~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~---~lp~~~~l~~L~~L~l~~N~l~~lp-~~~~~L~~L~L~~n 183 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLE---KLPELQNSSFLKIIDVDNNSLKKLP-DLPPSLEFIAAGNN 183 (454)
T ss_dssp TTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCS---SCCCCTTCTTCCEEECCSSCCSCCC-CCCTTCCEEECCSS
T ss_pred CCCcEEECCCCccCcccCC---CCCCCEEECcCCCCC---CCcccCCCCCCCEEECCCCcCcccC-CCcccccEEECcCC
Confidence 4555555555543332110 145566666555531 1211114556666666554333211 12345555555322
Q ss_pred eecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCC
Q 012562 277 IIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPN 356 (461)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~ 356 (461)
.. .. +. -+..+++++.|++++|.+.. +|...++|++|+++.+... .++ -+..+++
T Consensus 184 ~l--~~--------l~-~~~~l~~L~~L~l~~N~l~~---------l~~~~~~L~~L~l~~n~l~--~lp---~~~~l~~ 238 (454)
T 1jl5_A 184 QL--EE--------LP-ELQNLPFLTAIYADNNSLKK---------LPDLPLSLESIVAGNNILE--ELP---ELQNLPF 238 (454)
T ss_dssp CC--SS--------CC-CCTTCTTCCEEECCSSCCSS---------CCCCCTTCCEEECCSSCCS--SCC---CCTTCTT
T ss_pred cC--Cc--------Cc-cccCCCCCCEEECCCCcCCc---------CCCCcCcccEEECcCCcCC--ccc---ccCCCCC
Confidence 11 00 11 13456667777776665432 2212247777777665432 122 1457888
Q ss_pred cceEEEEecc
Q 012562 357 LEALTIYFEG 366 (461)
Q Consensus 357 L~~L~l~~~~ 366 (461)
|+.|++..+.
T Consensus 239 L~~L~l~~N~ 248 (454)
T 1jl5_A 239 LTTIYADNNL 248 (454)
T ss_dssp CCEEECCSSC
T ss_pred CCEEECCCCc
Confidence 8888887764
No 107
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.25 E-value=9.8e-08 Score=80.89 Aligned_cols=58 Identities=21% Similarity=0.163 Sum_probs=39.7
Q ss_pred CCCccEEEeceecccccccc--C-C-CccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecC
Q 012562 144 CESLEALKLACRQLRMCVLK--L-P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFR 210 (461)
Q Consensus 144 ~~~L~~L~L~~~~~~~~~l~--~-~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~ 210 (461)
.++|++|+|++| .+. . | .+..+++|++|+|.++.+++. ..+..++.|+.|++++|.+.
T Consensus 23 ~~~L~~L~l~~n-----~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~N~l~ 84 (168)
T 2ell_A 23 PAAVRELVLDNC-----KSNDGKIEGLTAEFVNLEFLSLINVGLISV----SNLPKLPKLKKLELSENRIF 84 (168)
T ss_dssp TTSCSEEECCSC-----BCBTTBCSSCCGGGGGCCEEEEESSCCCCC----SSCCCCSSCCEEEEESCCCC
T ss_pred cccCCEEECCCC-----CCChhhHHHHHHhCCCCCEEeCcCCCCCCh----hhhccCCCCCEEECcCCcCc
Confidence 357888888888 554 2 3 346778888888888776542 34566777888888777543
No 108
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.20 E-value=3.1e-07 Score=87.78 Aligned_cols=83 Identities=20% Similarity=0.257 Sum_probs=50.2
Q ss_pred cccCcccEEEeeeEEEcC-------hhhHHHHhhcCccccceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeE-
Q 012562 168 VGFSRLKSLDLHNVEFLD-------HNLLHKFVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYK- 239 (461)
Q Consensus 168 ~~l~~L~~L~L~~~~~~~-------~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~- 239 (461)
..+++|++|.+..+...+ ..++..++..+|.|+.|.|.+|. +.....+..++|++|.+..+.+. ...+.
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~--~l~l~~~~~~~L~~L~L~~~~l~-~~~l~~ 212 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN--NLSIGKKPRPNLKSLEIISGGLP-DSVVED 212 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCB--TCBCCSCBCTTCSEEEEECSBCC-HHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCC--CceeccccCCCCcEEEEecCCCC-hHHHHH
Confidence 356777777775543211 11577888999999999999873 22211234678888888866531 11111
Q ss_pred EE-EecCCeeeEEEe
Q 012562 240 VK-IACPNLVSFNFL 253 (461)
Q Consensus 240 ~~-~~~p~L~~L~l~ 253 (461)
+. ..+|+|++|.++
T Consensus 213 l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHSBCTTCCEEEEE
T ss_pred HHHccCCCCcEEEEe
Confidence 11 156888888775
No 109
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.20 E-value=1.4e-07 Score=97.46 Aligned_cols=103 Identities=16% Similarity=0.120 Sum_probs=63.0
Q ss_pred HhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEeccCCCccccc
Q 012562 295 LNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEGEDCDDWKI 374 (461)
Q Consensus 295 l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~~~~~~~~~~ 374 (461)
+..+++|+.|+|++|.+..+. +..+. .+++|++|+++.+....-. +. .+..+++|+.|+++.+.-.
T Consensus 490 ~~~l~~L~~L~Ls~N~L~~l~----~~~f~-~l~~L~~L~Ls~N~l~~l~-~~--~~~~l~~L~~L~Ls~N~l~------ 555 (635)
T 4g8a_A 490 FTELRNLTFLDLSQCQLEQLS----PTAFN-SLSSLQVLNMSHNNFFSLD-TF--PYKCLNSLQVLDYSLNHIM------ 555 (635)
T ss_dssp CTTCTTCCEEECTTSCCCEEC----TTTTT-TCTTCCEEECTTSCCCBCC-CG--GGTTCTTCCEEECTTSCCC------
T ss_pred hhhccccCEEECCCCccCCcC----hHHHc-CCCCCCEEECCCCcCCCCC-hh--HHhCCCCCCEEECCCCcCC------
Confidence 456778888888888765332 23333 5668888888666432211 11 4567888888888776531
Q ss_pred cCcCcc---ccccceeEEEEE--eecCChhHHHHHHHHHhcCc
Q 012562 375 SNKSIF---CLTCHLKTVELI--HVAGDENELELVRFLLKNGH 412 (461)
Q Consensus 375 ~~~~~~---~~~~~Lk~v~i~--~~~g~~~e~~~~~~ll~~a~ 412 (461)
..++. ...++|+.+.+. .|.+.+.-..|..++-++..
T Consensus 556 -~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~ 597 (635)
T 4g8a_A 556 -TSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQ 597 (635)
T ss_dssp -BCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTT
T ss_pred -CCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCC
Confidence 01121 123678888877 56666666778877655443
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.11 E-value=2.9e-07 Score=82.30 Aligned_cols=119 Identities=16% Similarity=0.050 Sum_probs=56.7
Q ss_pred CCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEE-ecC
Q 012562 145 ESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDI-SST 220 (461)
Q Consensus 145 ~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i-~~~ 220 (461)
++|++|+|+++ .+.. ..+..+++|++|+|.++.+..- -...+.+++.|+.|+|++|.+.++..-.+ ..+
T Consensus 40 ~~L~~L~Ls~n-----~i~~~~~~~~~~l~~L~~L~L~~N~l~~i--~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~ 112 (229)
T 3e6j_A 40 TNAQILYLHDN-----QITKLEPGVFDSLINLKELYLGSNQLGAL--PVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLV 112 (229)
T ss_dssp TTCSEEECCSS-----CCCCCCTTTTTTCTTCCEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCCEEEcCCC-----ccCccCHHHhhCccCCcEEECCCCCCCCc--ChhhcccCCCcCEEECCCCcCCccChhHhCcch
Confidence 45555555555 3333 1234455555555555554321 11234455555555555554332211001 124
Q ss_pred CcCeEEEeccCCCCCCCeE-EEEecCCeeeEEEecCCCCcee---eeCCCCceEEEE
Q 012562 221 SLKSLTLDNFGGDESGNYK-VKIACPNLVSFNFLASWAPDFA---FEDLDSLQNAFI 273 (461)
Q Consensus 221 ~L~~L~l~~~~~~~~~~~~-~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~l~l 273 (461)
+|+.|.+.++.+. .+. .....++|++|.++++...... +..+++|+.+++
T Consensus 113 ~L~~L~Ls~N~l~---~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 113 HLKELFMCCNKLT---ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166 (229)
T ss_dssp TCCEEECCSSCCC---SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred hhCeEeccCCccc---ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence 5555555555531 111 0124566777777665443322 445667776666
No 111
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.11 E-value=1.1e-06 Score=83.83 Aligned_cols=217 Identities=11% Similarity=0.055 Sum_probs=119.0
Q ss_pred cCCeEEEEEEcceeeeCCCCc-ccCCCccEEEeceeccccccccCCCccccCcccEEE-eeeEEEcChhhHHHHhhcCcc
Q 012562 121 RNVQVFDLTVYGEVTELPHCL-VTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLD-LHNVEFLDHNLLHKFVSSRRL 198 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~~l-~~~~~L~~L~L~~~~~~~~~l~~~~~~~l~~L~~L~-L~~~~~~~~~~l~~l~~~cp~ 198 (461)
+++++|+|+.+. ...+|... ..+++|++|+|++|.+.. .++...+..+++|+++. +..+.+.. .....+.++++
T Consensus 30 ~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~-~i~~~~f~~L~~l~~~l~~~~N~l~~--l~~~~f~~l~~ 105 (350)
T 4ay9_X 30 RNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLE-VIEADVFSNLPKLHEIRIEKANNLLY--INPEAFQNLPN 105 (350)
T ss_dssp TTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCC-EECTTSBCSCTTCCEEEEEEETTCCE--ECTTSBCCCTT
T ss_pred CCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCC-ccChhHhhcchhhhhhhcccCCcccc--cCchhhhhccc
Confidence 478888887654 44677654 458999999999982110 11112455677776644 44443332 11234678899
Q ss_pred ccceEEeeeecCCceEE-EEecCCcCeEEEeccCCCCCCCeEE-E-E-ecCCeeeEEEecCCCCceeee--CCCCceEEE
Q 012562 199 LEKLILKSCSFRDFKIL-DISSTSLKSLTLDNFGGDESGNYKV-K-I-ACPNLVSFNFLASWAPDFAFE--DLDSLQNAF 272 (461)
Q Consensus 199 Le~L~L~~c~~~~~~~~-~i~~~~L~~L~l~~~~~~~~~~~~~-~-~-~~p~L~~L~l~~~~~~~~~~~--~~~~L~~l~ 272 (461)
|+.|++.+|.+...... .....++..|.+..+.. ...+.. . . ....++.|.++++....+... ...+|.++.
T Consensus 106 L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~--i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~ 183 (350)
T 4ay9_X 106 LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN--IHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELN 183 (350)
T ss_dssp CCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTT--CCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEE
T ss_pred cccccccccccccCCchhhcccchhhhhhhccccc--cccccccchhhcchhhhhhccccccccCCChhhccccchhHHh
Confidence 99999999875443221 12234566666654331 111110 0 1 124677888887655433211 223455555
Q ss_pred EE-EEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhh
Q 012562 273 IF-FDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLL 351 (461)
Q Consensus 273 l~-~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL 351 (461)
+. .+. ....+. ..+.++++|+.|++++|.+..+... .|.+|++|.+..+..- ..++ -+
T Consensus 184 l~~~n~--l~~i~~-------~~f~~l~~L~~LdLs~N~l~~lp~~--------~~~~L~~L~~l~~~~l-~~lP---~l 242 (350)
T 4ay9_X 184 LSDNNN--LEELPN-------DVFHGASGPVILDISRTRIHSLPSY--------GLENLKKLRARSTYNL-KKLP---TL 242 (350)
T ss_dssp CTTCTT--CCCCCT-------TTTTTEECCSEEECTTSCCCCCCSS--------SCTTCCEEECTTCTTC-CCCC---CT
T ss_pred hccCCc--ccCCCH-------HHhccCcccchhhcCCCCcCccChh--------hhccchHhhhccCCCc-CcCC---Cc
Confidence 41 110 111111 2345788999999999876643321 4668888876443221 1222 24
Q ss_pred ccCCCcceEEEEe
Q 012562 352 NCSPNLEALTIYF 364 (461)
Q Consensus 352 ~~~p~L~~L~l~~ 364 (461)
..+++|+.+++..
T Consensus 243 ~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 243 EKLVALMEASLTY 255 (350)
T ss_dssp TTCCSCCEEECSC
T ss_pred hhCcChhhCcCCC
Confidence 6678888887754
No 112
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.11 E-value=5.5e-08 Score=93.70 Aligned_cols=75 Identities=20% Similarity=0.104 Sum_probs=36.7
Q ss_pred HHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchh-hHhhhhccCCCcceEEEEecc
Q 012562 291 LSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVP-SIISLLNCSPNLEALTIYFEG 366 (461)
Q Consensus 291 ~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l-~~~~lL~~~p~L~~L~l~~~~ 366 (461)
+...+...++|+.|+|++|.+...........+. ..++|++|+++.|....... .....++.+|+|+.|++..+.
T Consensus 175 l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~-~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 175 LMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD-RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGG-GCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHh-cCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 4444455666666666666544221111112222 33466666666654422221 111245566777777776654
No 113
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.11 E-value=1.9e-08 Score=87.90 Aligned_cols=105 Identities=17% Similarity=0.163 Sum_probs=59.1
Q ss_pred CcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEe
Q 012562 140 CLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDIS 218 (461)
Q Consensus 140 ~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~ 218 (461)
.+..+++|++|+|++| .+.. |.+..+++|++|+|.++.+++ +...+..+|.|+.|++++|.+.++. .+.
T Consensus 43 ~~~~l~~L~~L~ls~n-----~l~~l~~~~~l~~L~~L~l~~n~l~~---l~~~~~~~~~L~~L~L~~N~l~~l~--~~~ 112 (198)
T 1ds9_A 43 TLSTLKACKHLALSTN-----NIEKISSLSGMENLRILSLGRNLIKK---IENLDAVADTLEELWISYNQIASLS--GIE 112 (198)
T ss_dssp HHHHTTTCSEEECSEE-----EESCCCCHHHHTTCCEEEEEEEEECS---CSSHHHHHHHCSEEEEEEEECCCHH--HHH
T ss_pred HHhcCCCCCEEECCCC-----CCccccccccCCCCCEEECCCCCccc---ccchhhcCCcCCEEECcCCcCCcCC--ccc
Confidence 5556777777777777 4444 455667777777777777763 3344555677777777777655432 111
Q ss_pred -cCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEec
Q 012562 219 -STSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLA 254 (461)
Q Consensus 219 -~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~ 254 (461)
.++|+.|.+.+|.+.+.......-.+++|++|.+.+
T Consensus 113 ~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~ 149 (198)
T 1ds9_A 113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149 (198)
T ss_dssp HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECS
T ss_pred cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecC
Confidence 245666666655531100000011345566666655
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.08 E-value=4.8e-07 Score=80.93 Aligned_cols=127 Identities=17% Similarity=0.083 Sum_probs=67.8
Q ss_pred cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-C--CccccCcccEEEeeeEEEcChhhHHHHhhcCc
Q 012562 121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-P--FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR 197 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~--~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp 197 (461)
.++++|+++.+......|..+..+++|++|+|+++ .+.. + .+..+++|++|+|.++.++.- ....+.+++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-----~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l--~~~~~~~l~ 112 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-----QLGALPVGVFDSLTQLTVLDLGTNQLTVL--PSAVFDRLV 112 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-----CCCCCCTTTTTTCTTCCEEECCSSCCCCC--CTTTTTTCT
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-----CCCCcChhhcccCCCcCEEECCCCcCCcc--ChhHhCcch
Confidence 45667776554433333444555677777777777 4433 2 245667777777777666532 223345667
Q ss_pred cccceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecC
Q 012562 198 LLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLAS 255 (461)
Q Consensus 198 ~Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~ 255 (461)
.|+.|+|++|.+..+.......++|+.|.+.+|.+..... ...-..++|++|.+.++
T Consensus 113 ~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 113 HLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH-GAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp TCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECTTS
T ss_pred hhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCC
Confidence 7777777776543221100112567777777665421110 00113566777776664
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.07 E-value=3.6e-07 Score=81.17 Aligned_cols=104 Identities=16% Similarity=0.142 Sum_probs=46.6
Q ss_pred ccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEE-ecCCcCeEEEeccCCCCCCCeEEEEecC
Q 012562 167 SVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDI-SSTSLKSLTLDNFGGDESGNYKVKIACP 245 (461)
Q Consensus 167 ~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~p 245 (461)
+..+++|++|+|.++.+..- ....+.+++.|+.|+|++|.+..+..-.. ..++|+.|.+.+|.+..... ...-.++
T Consensus 52 ~~~l~~L~~L~Ls~N~i~~~--~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~ 128 (220)
T 2v9t_B 52 FSPYKKLRRIDLSNNQISEL--APDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRV-DAFQDLH 128 (220)
T ss_dssp STTCTTCCEEECCSSCCCEE--CTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCT
T ss_pred hhCCCCCCEEECCCCcCCCc--CHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCH-HHcCCCC
Confidence 34455555555555544321 12224445555555555544322111000 12445555555554311100 0011356
Q ss_pred CeeeEEEecCCCCce---eeeCCCCceEEEE
Q 012562 246 NLVSFNFLASWAPDF---AFEDLDSLQNAFI 273 (461)
Q Consensus 246 ~L~~L~l~~~~~~~~---~~~~~~~L~~l~l 273 (461)
+|++|+++++..... .+..+++|+.+++
T Consensus 129 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 129 NLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL 159 (220)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCEECHHHHhCCCCCCEEEe
Confidence 777777776544332 2445667777776
No 116
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.07 E-value=1.7e-07 Score=80.05 Aligned_cols=58 Identities=12% Similarity=0.076 Sum_probs=36.2
Q ss_pred cCCCccEEEeceeccccccccC-CCccccC-cccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeec
Q 012562 143 TCESLEALKLACRQLRMCVLKL-PFSVGFS-RLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSF 209 (461)
Q Consensus 143 ~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~-~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~ 209 (461)
.+.+|+.|++++| .+.. +....+. +|++|+|+++.+++- ..+.+++.|+.|++++|.+
T Consensus 17 ~~~~L~~L~l~~n-----~l~~i~~~~~~~~~L~~L~Ls~N~l~~~----~~l~~l~~L~~L~Ls~N~l 76 (176)
T 1a9n_A 17 NAVRDRELDLRGY-----KIPVIENLGATLDQFDAIDFSDNEIRKL----DGFPLLRRLKTLLVNNNRI 76 (176)
T ss_dssp CTTSCEEEECTTS-----CCCSCCCGGGGTTCCSEEECCSSCCCEE----CCCCCCSSCCEEECCSSCC
T ss_pred CcCCceEEEeeCC-----CCchhHHhhhcCCCCCEEECCCCCCCcc----cccccCCCCCEEECCCCcc
Confidence 4667777777777 4444 4444443 777777777766532 2355677777777777653
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.02 E-value=5.7e-07 Score=79.88 Aligned_cols=105 Identities=17% Similarity=0.179 Sum_probs=49.1
Q ss_pred ccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEe-cCCcCeEEEeccCCCCCCCeEEEEecC
Q 012562 167 SVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDIS-STSLKSLTLDNFGGDESGNYKVKIACP 245 (461)
Q Consensus 167 ~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~~~~~~p 245 (461)
+..+++|++|+|.++.+++- ....+.+++.|+.|+|++|.+.++..-.+. .++|++|.+.+|.+...... ....++
T Consensus 53 ~~~l~~L~~L~L~~N~i~~i--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~ 129 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKITDI--EEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGND-SFIGLS 129 (220)
T ss_dssp GGGCTTCCEEECCSSCCCEE--CTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTT-SSTTCT
T ss_pred hccCCCCCEEECCCCcCCEE--CHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHh-HcCCCc
Confidence 34455555555555544321 112244555555555555543322111111 24555555555543111000 011456
Q ss_pred CeeeEEEecCCCCce---eeeCCCCceEEEEE
Q 012562 246 NLVSFNFLASWAPDF---AFEDLDSLQNAFIF 274 (461)
Q Consensus 246 ~L~~L~l~~~~~~~~---~~~~~~~L~~l~l~ 274 (461)
+|++|+++++..... .+..+++|+.+++.
T Consensus 130 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 130 SVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp TCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred cCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence 777777776544333 34566777777773
No 118
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.00 E-value=6.8e-07 Score=78.54 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=17.6
Q ss_pred ecCCeeeEEEecCCCCce---eeeCCCCceEEEEE
Q 012562 243 ACPNLVSFNFLASWAPDF---AFEDLDSLQNAFIF 274 (461)
Q Consensus 243 ~~p~L~~L~l~~~~~~~~---~~~~~~~L~~l~l~ 274 (461)
..++|++|+++++..... .+..+++|+.+++.
T Consensus 122 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 156 (208)
T 2o6s_A 122 KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH 156 (208)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cCCcCCEEECCCCccceeCHHHhccCCCccEEEec
Confidence 346666666666433322 13456667776663
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.97 E-value=1.5e-07 Score=77.91 Aligned_cols=79 Identities=19% Similarity=0.139 Sum_probs=53.0
Q ss_pred CCCccEEEeceecccccccc--C-C-CccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCc-eEEEEe
Q 012562 144 CESLEALKLACRQLRMCVLK--L-P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDF-KILDIS 218 (461)
Q Consensus 144 ~~~L~~L~L~~~~~~~~~l~--~-~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~-~~~~i~ 218 (461)
.++|+.|++++| .+. . | .+..+++|++|+|.++.+++. ..+..++.|+.|++++|.+.+. ....-.
T Consensus 16 ~~~l~~L~l~~n-----~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 86 (149)
T 2je0_A 16 PSDVKELVLDNS-----RSNEGKLEGLTDEFEELEFLSTINVGLTSI----ANLPKLNKLKKLELSDNRVSGGLEVLAEK 86 (149)
T ss_dssp GGGCSEEECTTC-----BCBTTBCCSCCTTCTTCCEEECTTSCCCCC----TTCCCCTTCCEEECCSSCCCSCTHHHHHH
T ss_pred CccCeEEEccCC-----cCChhHHHHHHhhcCCCcEEECcCCCCCCc----hhhhcCCCCCEEECCCCcccchHHHHhhh
Confidence 468999999999 555 2 3 446789999999998877653 4467788999999988865442 110011
Q ss_pred cCCcCeEEEeccC
Q 012562 219 STSLKSLTLDNFG 231 (461)
Q Consensus 219 ~~~L~~L~l~~~~ 231 (461)
.++|+.|.+.+|.
T Consensus 87 l~~L~~L~ls~N~ 99 (149)
T 2je0_A 87 CPNLTHLNLSGNK 99 (149)
T ss_dssp CTTCCEEECTTSC
T ss_pred CCCCCEEECCCCc
Confidence 3556666665555
No 120
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.95 E-value=7.6e-07 Score=79.04 Aligned_cols=125 Identities=12% Similarity=0.098 Sum_probs=59.5
Q ss_pred CCeEEEEEEcceeeeCCC-CcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCc
Q 012562 122 NVQVFDLTVYGEVTELPH-CLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR 197 (461)
Q Consensus 122 ~l~~L~l~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp 197 (461)
++++|++..+... .+|. .+..+++|++|+|+++ .+.. ..+..+++|++|+|+++.++.- -..++.+++
T Consensus 33 ~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N-----~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l--~~~~f~~l~ 104 (220)
T 2v9t_B 33 TITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNN-----QISELAPDAFQGLRSLNSLVLYGNKITEL--PKSLFEGLF 104 (220)
T ss_dssp TCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSS-----CCCEECTTTTTTCSSCCEEECCSSCCCCC--CTTTTTTCT
T ss_pred CCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCC-----cCCCcCHHHhhCCcCCCEEECCCCcCCcc--CHhHccCCC
Confidence 4566666444322 2333 3334566666666666 3322 2345566666666666655431 222345566
Q ss_pred cccceEEeeeecCCceEEEEe-cCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecC
Q 012562 198 LLEKLILKSCSFRDFKILDIS-STSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLAS 255 (461)
Q Consensus 198 ~Le~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~ 255 (461)
.|+.|+|++|.+.++..-.+. .++|+.|.+.+|.+...... ..-..++|++|.+.++
T Consensus 105 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 105 SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG-TFSPLRAIQTMHLAQN 162 (220)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECCSS
T ss_pred CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHH-HHhCCCCCCEEEeCCC
Confidence 666666666554332211111 25566666665553111100 0113456666666553
No 121
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.92 E-value=2.2e-06 Score=81.88 Aligned_cols=112 Identities=18% Similarity=0.223 Sum_probs=65.1
Q ss_pred eeeCCCCcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeee-ec
Q 012562 134 VTELPHCLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSC-SF 209 (461)
Q Consensus 134 ~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c-~~ 209 (461)
...+|..+ .+++++|+|+++ .+.. ..+..+++|++|+|+++.+.+. --...+.+++.|+++.+..+ ..
T Consensus 21 Lt~iP~~l--~~~l~~L~Ls~N-----~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~-i~~~~f~~L~~l~~~l~~~~N~l 92 (350)
T 4ay9_X 21 VTEIPSDL--PRNAIELRFVLT-----KLRVIQKGAFSGFGDLEKIEISQNDVLEV-IEADVFSNLPKLHEIRIEKANNL 92 (350)
T ss_dssp CCSCCTTC--CTTCSEEEEESC-----CCSEECTTSSTTCTTCCEEEEECCTTCCE-ECTTSBCSCTTCCEEEEEEETTC
T ss_pred CCccCcCc--CCCCCEEEccCC-----cCCCcCHHHHcCCCCCCEEECcCCCCCCc-cChhHhhcchhhhhhhcccCCcc
Confidence 45677765 358999999999 5544 2467899999999998865432 11124567788776555443 22
Q ss_pred CCceEEEE-ecCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEec
Q 012562 210 RDFKILDI-SSTSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLA 254 (461)
Q Consensus 210 ~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~ 254 (461)
..+..-.. ..++|+.|.+.++.+...... ......++..|.+.+
T Consensus 93 ~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~l~~l~l~~ 137 (350)
T 4ay9_X 93 LYINPEAFQNLPNLQYLLISNTGIKHLPDV-HKIHSLQKVLLDIQD 137 (350)
T ss_dssp CEECTTSBCCCTTCCEEEEEEECCSSCCCC-TTCCBSSCEEEEEES
T ss_pred cccCchhhhhccccccccccccccccCCch-hhcccchhhhhhhcc
Confidence 21111011 136788888887764211111 112445666666655
No 122
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.92 E-value=1.6e-06 Score=73.13 Aligned_cols=68 Identities=13% Similarity=0.230 Sum_probs=50.8
Q ss_pred eeCCCCcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEE-EcChhhHHHHhhc---CccccceEEeee
Q 012562 135 TELPHCLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVE-FLDHNLLHKFVSS---RRLLEKLILKSC 207 (461)
Q Consensus 135 ~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~-~~~~~~l~~l~~~---cp~Le~L~L~~c 207 (461)
..+|..-...-.|++|+|++| .+.+ .....+++|++|+|.+|. ++|. ++..+... |+.|++|+|++|
T Consensus 51 ~~LP~~~~~~~~L~~LDLs~~-----~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls~C 124 (176)
T 3e4g_A 51 NHLPTGPLDKYKIQAIDATDS-----CIMSIGFDHMEGLQYVEKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEIISC 124 (176)
T ss_dssp GGSCCCSTTCCCEEEEEEESC-----CCCGGGGGGGTTCSCCCEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEESC
T ss_pred ccCCcccCCCceEeEEeCcCC-----CccHHHHHHhcCCCCCCEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcCCC
Confidence 355654434457999999999 4444 234678999999999985 6666 88887663 789999999998
Q ss_pred e
Q 012562 208 S 208 (461)
Q Consensus 208 ~ 208 (461)
.
T Consensus 125 ~ 125 (176)
T 3e4g_A 125 G 125 (176)
T ss_dssp T
T ss_pred C
Confidence 5
No 123
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.91 E-value=5.2e-06 Score=75.81 Aligned_cols=38 Identities=24% Similarity=0.526 Sum_probs=34.9
Q ss_pred CCCCCCCChHHHHHHhcCCChhHHH-HHHHHhHhHHHhh
Q 012562 15 GDRLCSLPEPVIHQIFSFMETIDVV-RASAVSRKWRYLW 52 (461)
Q Consensus 15 ~D~is~LPd~iL~~Ils~Lp~~d~~-~~s~vskrWr~lw 52 (461)
...+..||+|||.+||++||.++.+ ++++|||+|+.+.
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~ 86 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELV 86 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHH
T ss_pred ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHh
Confidence 3578899999999999999999999 9999999999863
No 124
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.87 E-value=1.8e-06 Score=75.85 Aligned_cols=126 Identities=14% Similarity=0.153 Sum_probs=67.2
Q ss_pred CCccEEEeceeccccccccC-C--CccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEecCC
Q 012562 145 ESLEALKLACRQLRMCVLKL-P--FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDISSTS 221 (461)
Q Consensus 145 ~~L~~L~L~~~~~~~~~l~~-~--~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~~~ 221 (461)
++|++|+|+++ .+.. + .+..+++|++|+|.++.+.+- ....+.+++.|++|+|++|.+.++..
T Consensus 28 ~~l~~L~l~~n-----~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~------- 93 (208)
T 2o6s_A 28 AQTTYLDLETN-----SLKSLPNGVFDELTSLTQLYLGGNKLQSL--PNGVFNKLTSLTYLNLSTNQLQSLPN------- 93 (208)
T ss_dssp TTCSEEECCSS-----CCCCCCTTTTTTCTTCSEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSCCCCCCT-------
T ss_pred CCCcEEEcCCC-----ccCcCChhhhcccccCcEEECCCCccCcc--ChhhcCCCCCcCEEECCCCcCCccCH-------
Confidence 46777777777 4443 2 245677777777777665532 22334566777777777654322110
Q ss_pred cCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCCCce---eeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcC
Q 012562 222 LKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDF---AFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNEL 298 (461)
Q Consensus 222 L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~---~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l 298 (461)
.. .-.+++|++|.++++..... .+..+++|+.+++..+.. ...+ ...+..+
T Consensus 94 --------------~~---~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l--~~~~-------~~~~~~l 147 (208)
T 2o6s_A 94 --------------GV---FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL--KSVP-------DGVFDRL 147 (208)
T ss_dssp --------------TT---TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC--SCCC-------TTTTTTC
T ss_pred --------------hH---hcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcc--ceeC-------HHHhccC
Confidence 00 01345566666655433222 245567777777743221 0111 1224457
Q ss_pred CCccEEEEecch
Q 012562 299 CEVKALKLSTAF 310 (461)
Q Consensus 299 ~~l~~L~l~~~~ 310 (461)
++++.|++.+|.
T Consensus 148 ~~L~~L~l~~N~ 159 (208)
T 2o6s_A 148 TSLQYIWLHDNP 159 (208)
T ss_dssp TTCCEEECCSCC
T ss_pred CCccEEEecCCC
Confidence 778888888774
No 125
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.84 E-value=4.3e-06 Score=79.87 Aligned_cols=216 Identities=15% Similarity=0.105 Sum_probs=119.8
Q ss_pred hHHHHHHHHHHhcCCCCCcccEEEEEEeccC-Cc--hhHHHHHHHH-HhcCCeEEEEEEcc-e--------eeeCCCCcc
Q 012562 76 EKFKDFVNWVLLSQSGSVSIQRFRLYCLSYA-ND--YTVYRWVCAV-ARRNVQVFDLTVYG-E--------VTELPHCLV 142 (461)
Q Consensus 76 ~~~~~~v~~~l~~~~~~~~i~~l~l~~~~~~-~~--~~~~~wi~~~-~~~~l~~L~l~~~~-~--------~~~lp~~l~ 142 (461)
..+.+.+.++|..... ..++.+.+....+. .. ..+..++..+ ..++++.|.+.... . ...++..+.
T Consensus 91 ~~~~~~~~~fl~~~~~-~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~ 169 (362)
T 2ra8_A 91 EEGVNLMDKILKDKKL-PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLD 169 (362)
T ss_dssp HTTCCHHHHHHHCTTG-GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHH
T ss_pred ccHHHHHHHHhcCCCc-hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHh
Confidence 3445566677766665 45788877754432 11 2344444322 23589999883221 0 112333344
Q ss_pred cCCCccEEEeceeccccccccCCCccccCcccEEEeeeEEEcChhhHHHHhh-cCccccceEEeeee--cCCceEEEEec
Q 012562 143 TCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNVEFLDHNLLHKFVS-SRRLLEKLILKSCS--FRDFKILDISS 219 (461)
Q Consensus 143 ~~~~L~~L~L~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~-~cp~Le~L~L~~c~--~~~~~~~~i~~ 219 (461)
.+++|+.|.|+++. .+..+. ..+++|++|.|..+.++++ .+..+.. .+|+|+.|+|..+. ..+... +
T Consensus 170 ~~P~L~~L~L~g~~----~l~l~~-~~~~~L~~L~L~~~~l~~~-~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~--~-- 239 (362)
T 2ra8_A 170 AMPLLNNLKIKGTN----NLSIGK-KPRPNLKSLEIISGGLPDS-VVEDILGSDLPNLEKLVLYVGVEDYGFDGD--M-- 239 (362)
T ss_dssp TCTTCCEEEEECCB----TCBCCS-CBCTTCSEEEEECSBCCHH-HHHHHHHSBCTTCCEEEEECBCGGGTCCSC--G--
T ss_pred cCCCCcEEEEeCCC----Cceecc-ccCCCCcEEEEecCCCChH-HHHHHHHccCCCCcEEEEeccccccccchh--H--
Confidence 57899999998871 133333 3489999999998888776 6666653 69999999986431 111000 0
Q ss_pred CCcCeEEEeccCCCCCCCeEEE-EecCCeeeEEEecCCCCceeeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHH--h
Q 012562 220 TSLKSLTLDNFGGDESGNYKVK-IACPNLVSFNFLASWAPDFAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLL--N 296 (461)
Q Consensus 220 ~~L~~L~l~~~~~~~~~~~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l--~ 296 (461)
..+.. . +. -.+|+|++|.+.++.... .....+. .
T Consensus 240 ~~l~~-------------~-l~~~~~p~Lr~L~L~~~~i~~-----------------------------~~~~~la~a~ 276 (362)
T 2ra8_A 240 NVFRP-------------L-FSKDRFPNLKWLGIVDAEEQN-----------------------------VVVEMFLESD 276 (362)
T ss_dssp GGTGG-------------G-SCTTTCTTCCEEEEESCTTHH-----------------------------HHHHHHHHCS
T ss_pred HHHHH-------------H-HhcCCCCCcCEEeCCCCCCch-----------------------------HHHHHHHhCc
Confidence 00000 0 00 135788888887643211 0111122 2
Q ss_pred cCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhh
Q 012562 297 ELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPS 346 (461)
Q Consensus 297 ~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~ 346 (461)
.+++|+.|+|+.|.+...........++ .+++|++|++..|..+.+...
T Consensus 277 ~~~~L~~LdLs~n~L~d~G~~~L~~~L~-~l~~L~~L~L~~n~i~d~~~~ 325 (362)
T 2ra8_A 277 ILPQLETMDISAGVLTDEGARLLLDHVD-KIKHLKFINMKYNYLSDEMKK 325 (362)
T ss_dssp SGGGCSEEECCSSCCBHHHHHHHHTTHH-HHTTCSEEECCSBBCCHHHHH
T ss_pred cCCCCCEEECCCCCCChHHHHHHHhhcc-cCCcceEEECCCCcCCHHHHH
Confidence 4667888888777766432212122333 566888888876655544444
No 126
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.81 E-value=2.8e-06 Score=81.45 Aligned_cols=79 Identities=22% Similarity=0.205 Sum_probs=38.6
Q ss_pred CCeEEEEEEcceeeeCCCCcc--cCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcC
Q 012562 122 NVQVFDLTVYGEVTELPHCLV--TCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSR 196 (461)
Q Consensus 122 ~l~~L~l~~~~~~~~lp~~l~--~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~c 196 (461)
.++.|+|+.+. ...++...+ .+++|++|+|++| .+.. ..+..+++|++|+|.++.+..- ....+.++
T Consensus 40 ~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N-----~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l 111 (361)
T 2xot_A 40 YTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHN-----HLNFISSEAFVPVPNLRYLDLSSNHLHTL--DEFLFSDL 111 (361)
T ss_dssp TCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSS-----CCCEECTTTTTTCTTCCEEECCSSCCCEE--CTTTTTTC
T ss_pred CCCEEECCCCC-CCccChhhhhhcccccCEEECCCC-----cCCccChhhccCCCCCCEEECCCCcCCcC--CHHHhCCC
Confidence 34555554433 222333322 4556666666666 3322 1344556666666666554431 12234555
Q ss_pred ccccceEEeeee
Q 012562 197 RLLEKLILKSCS 208 (461)
Q Consensus 197 p~Le~L~L~~c~ 208 (461)
+.|+.|+|++|.
T Consensus 112 ~~L~~L~L~~N~ 123 (361)
T 2xot_A 112 QALEVLLLYNNH 123 (361)
T ss_dssp TTCCEEECCSSC
T ss_pred cCCCEEECCCCc
Confidence 666666666554
No 127
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.80 E-value=5.2e-06 Score=74.90 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=32.5
Q ss_pred CCCCCChHHHHHHhcCCChhHHHHHHHHhHhHHHh
Q 012562 17 RLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYL 51 (461)
Q Consensus 17 ~is~LPd~iL~~Ils~Lp~~d~~~~s~vskrWr~l 51 (461)
-|++||+||+.+||+||+.+|+++++.|||+||.+
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l 38 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET 38 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999963
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.75 E-value=3e-06 Score=72.24 Aligned_cols=139 Identities=12% Similarity=-0.006 Sum_probs=76.1
Q ss_pred CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEecCCcCeEEEeccCCCCCCCeEEEEec
Q 012562 165 PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDISSTSLKSLTLDNFGGDESGNYKVKIAC 244 (461)
Q Consensus 165 ~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~~~~~~ 244 (461)
+.+..+++|++|+|.++.++.- ..+...+|.|+.|++++|.+.++ . ..-.+
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i---~~~~~~~~~L~~L~Ls~N~l~~~-----~---------------------~l~~l 63 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVI---ENLGATLDQFDAIDFSDNEIRKL-----D---------------------GFPLL 63 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSC---CCGGGGTTCCSEEECCSSCCCEE-----C---------------------CCCCC
T ss_pred HhcCCcCCceEEEeeCCCCchh---HHhhhcCCCCCEEECCCCCCCcc-----c---------------------ccccC
Confidence 4556778888888888877642 33344456888888888643321 0 00135
Q ss_pred CCeeeEEEecCCCCceeeeCCCCceEEEEEEEeecCCCCchhhHHHHHHHHhcCCCccEEEEecchhhhhccccccccCC
Q 012562 245 PNLVSFNFLASWAPDFAFEDLDSLQNAFIFFDIIDRDERDNESCHILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIP 324 (461)
Q Consensus 245 p~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~ 324 (461)
++|++|.++++...... ..++..+++|+.|++++|.+..+.. ...+.
T Consensus 64 ~~L~~L~Ls~N~l~~~~------------------------------~~~~~~l~~L~~L~L~~N~i~~~~~---~~~l~ 110 (176)
T 1a9n_A 64 RRLKTLLVNNNRICRIG------------------------------EGLDQALPDLTELILTNNSLVELGD---LDPLA 110 (176)
T ss_dssp SSCCEEECCSSCCCEEC------------------------------SCHHHHCTTCCEEECCSCCCCCGGG---GGGGG
T ss_pred CCCCEEECCCCcccccC------------------------------cchhhcCCCCCEEECCCCcCCcchh---hHhhh
Confidence 56666666664332210 0122356677777777776543222 11223
Q ss_pred cccCcccEEEEEEeCCCcchhhHhhhhccCCCcceEEEEecc
Q 012562 325 NSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLEALTIYFEG 366 (461)
Q Consensus 325 ~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~~ 366 (461)
.+++|++|++..+............+..+|+|+.|++..+.
T Consensus 111 -~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 111 -SLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp -GCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred -cCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 45577777776554311110001145678888888777654
No 129
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.73 E-value=2e-07 Score=89.71 Aligned_cols=58 Identities=17% Similarity=0.184 Sum_probs=32.3
Q ss_pred CCccEEEeceeccccccccC----CCccccCcccEEEeeeEEEcChhhHHHH---h-hcCccccceEEeeee
Q 012562 145 ESLEALKLACRQLRMCVLKL----PFSVGFSRLKSLDLHNVEFLDHNLLHKF---V-SSRRLLEKLILKSCS 208 (461)
Q Consensus 145 ~~L~~L~L~~~~~~~~~l~~----~~~~~l~~L~~L~L~~~~~~~~~~l~~l---~-~~cp~Le~L~L~~c~ 208 (461)
++|++|+|++| .+.+ .-...+++|++|+|.+|.+++. ....+ + ..++.|++|+|++|.
T Consensus 101 ~~L~~L~Ls~n-----~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~-~~~~L~~~L~~~~~~L~~L~Ls~n~ 166 (372)
T 3un9_A 101 HALDEVNLASC-----QLDPAGLRTLLPVFLRARKLGLQLNSLGPE-ACKDLRDLLLHDQCQITTLRLSNNP 166 (372)
T ss_dssp SCEEEEECTTC-----CCCHHHHHHTHHHHHTEEEEECCSSCCCHH-HHHHHHHHHHSTTCCCCEEECCSSC
T ss_pred CCceEEEecCC-----CCCHHHHHHHHHHHHhccHhhcCCCCCCHH-HHHHHHHHHHhcCCccceeeCCCCC
Confidence 56777777777 4433 1122455677777777766554 33332 2 235666666666654
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.67 E-value=3.9e-06 Score=72.68 Aligned_cols=88 Identities=16% Similarity=0.124 Sum_probs=56.3
Q ss_pred eeCCCCcccCCCccEEEeceeccccccccC--C--CccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecC
Q 012562 135 TELPHCLVTCESLEALKLACRQLRMCVLKL--P--FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFR 210 (461)
Q Consensus 135 ~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~--~--~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~ 210 (461)
..+|..+.. +|++|+|+++ .+.. + .+..+++|++|+|.++.+++- ....+.+++.|+.|+|++|.+.
T Consensus 21 ~~ip~~~~~--~l~~L~l~~n-----~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~ 91 (192)
T 1w8a_A 21 KEIPRDIPL--HTTELLLNDN-----ELGRISSDGLFGRLPHLVKLELKRNQLTGI--EPNAFEGASHIQELQLGENKIK 91 (192)
T ss_dssp SSCCSCCCT--TCSEEECCSC-----CCCSBCCSCSGGGCTTCCEEECCSSCCCCB--CTTTTTTCTTCCEEECCSCCCC
T ss_pred CcCccCCCC--CCCEEECCCC-----cCCccCCccccccCCCCCEEECCCCCCCCc--CHhHcCCcccCCEEECCCCcCC
Confidence 456665543 8899999998 5544 2 266889999999998887652 2345677889999999887643
Q ss_pred CceEEEEe-cCCcCeEEEeccC
Q 012562 211 DFKILDIS-STSLKSLTLDNFG 231 (461)
Q Consensus 211 ~~~~~~i~-~~~L~~L~l~~~~ 231 (461)
++..-.+. .++|+.|.+.++.
T Consensus 92 ~~~~~~~~~l~~L~~L~L~~N~ 113 (192)
T 1w8a_A 92 EISNKMFLGLHQLKTLNLYDNQ 113 (192)
T ss_dssp EECSSSSTTCTTCCEEECCSSC
T ss_pred ccCHHHhcCCCCCCEEECCCCc
Confidence 32111111 1445555555444
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.64 E-value=6.8e-06 Score=71.21 Aligned_cols=102 Identities=20% Similarity=0.125 Sum_probs=45.8
Q ss_pred CccEEEeceeccccccccC-C-CccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEe-cCCc
Q 012562 146 SLEALKLACRQLRMCVLKL-P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDIS-STSL 222 (461)
Q Consensus 146 ~L~~L~L~~~~~~~~~l~~-~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~-~~~L 222 (461)
+|++|+|+++ .+.. | .+..+++|++|+|+++.++.- ....+.+++.|+.|+|++|.+.++..-.+. .++|
T Consensus 32 ~l~~L~L~~n-----~i~~ip~~~~~l~~L~~L~Ls~N~i~~i--~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L 104 (193)
T 2wfh_A 32 DVTELYLDGN-----QFTLVPKELSNYKHLTLIDLSNNRISTL--SNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSL 104 (193)
T ss_dssp TCCEEECCSS-----CCCSCCGGGGGCTTCCEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred CCCEEECCCC-----cCchhHHHhhcccCCCEEECCCCcCCEe--CHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCC
Confidence 5555555555 3322 1 334455555555555554431 112244455555555555543222110011 1455
Q ss_pred CeEEEeccCCCCCCCeEEEEecCCeeeEEEecC
Q 012562 223 KSLTLDNFGGDESGNYKVKIACPNLVSFNFLAS 255 (461)
Q Consensus 223 ~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~ 255 (461)
+.|.+.+|.+..... ...-..++|++|.+.++
T Consensus 105 ~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 105 RLLSLHGNDISVVPE-GAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CEEECCSSCCCBCCT-TTTTTCTTCCEEECCSS
T ss_pred CEEECCCCCCCeeCh-hhhhcCccccEEEeCCC
Confidence 555555554311000 00114678888888774
No 132
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.60 E-value=8.1e-06 Score=72.33 Aligned_cols=127 Identities=14% Similarity=0.041 Sum_probs=86.6
Q ss_pred CCeEEEEEEcceeeeCCCC-cccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCc
Q 012562 122 NVQVFDLTVYGEVTELPHC-LVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR 197 (461)
Q Consensus 122 ~l~~L~l~~~~~~~~lp~~-l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp 197 (461)
.+++|+++.+......|.. +..+++|++|+|+++ .+.. ..+..+++|++|+|.++.++.- ....+.+++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-----~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~ 105 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-----KITDIEEGAFEGASGVNEILLTSNRLENV--QHKMFKGLE 105 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-----CCCEECTTTTTTCTTCCEEECCSSCCCCC--CGGGGTTCS
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-----cCCEECHHHhCCCCCCCEEECCCCccCcc--CHhHhcCCc
Confidence 4677877655433333433 456899999999999 5444 2567899999999999988653 344577899
Q ss_pred cccceEEeeeecCCceEEEEe-cCCcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCC
Q 012562 198 LLEKLILKSCSFRDFKILDIS-STSLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASW 256 (461)
Q Consensus 198 ~Le~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 256 (461)
.|++|+|++|.+.++....+. .++|+.|.+.+|.+..... ...-.+++|++|.++++.
T Consensus 106 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 106 SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP-GAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp SCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT-TTTTTCTTCCEEECCSCC
T ss_pred CCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH-HHhcCCCCCCEEEecCcC
Confidence 999999999876554322222 3789999999887522111 011257899999998853
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.52 E-value=1.5e-05 Score=67.76 Aligned_cols=105 Identities=17% Similarity=0.087 Sum_probs=54.6
Q ss_pred CCccEEEeceeccccccccC-C--CccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEE-ecC
Q 012562 145 ESLEALKLACRQLRMCVLKL-P--FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDI-SST 220 (461)
Q Consensus 145 ~~L~~L~L~~~~~~~~~l~~-~--~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i-~~~ 220 (461)
++|++|+|+++ .+.. + .+..+++|++|+|.++.++.- ....+.+++.|+.|++++|.+.+...-.+ ..+
T Consensus 28 ~~l~~L~l~~n-----~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 100 (177)
T 2o6r_A 28 SSATRLELESN-----KLQSLPHGVFDKLTQLTKLSLSQNQIQSL--PDGVFDKLTKLTILYLHENKLQSLPNGVFDKLT 100 (177)
T ss_dssp TTCSEEECCSS-----CCCCCCTTTTTTCTTCSEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCcEEEeCCC-----cccEeCHHHhcCcccccEEECCCCcceEe--ChhHccCCCccCEEECCCCCccccCHHHhhCCc
Confidence 46666666666 4333 1 234566666666666655432 22234556666666666665433221111 125
Q ss_pred CcCeEEEeccCCCCCCCeEEEEecCCeeeEEEecCCC
Q 012562 221 SLKSLTLDNFGGDESGNYKVKIACPNLVSFNFLASWA 257 (461)
Q Consensus 221 ~L~~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 257 (461)
+|+.|.+..+.+..... ...-..++|++|.+.++..
T Consensus 101 ~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 101 QLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp TCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCB
T ss_pred ccCEEECcCCcceEeCH-HHhcCCcccCEEEecCCCe
Confidence 66666666665311110 0111468899999988543
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.50 E-value=9.6e-06 Score=70.15 Aligned_cols=81 Identities=16% Similarity=0.078 Sum_probs=60.5
Q ss_pred CCeEEEEEEcceeeeCCCC--cccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcC
Q 012562 122 NVQVFDLTVYGEVTELPHC--LVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSR 196 (461)
Q Consensus 122 ~l~~L~l~~~~~~~~lp~~--l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~c 196 (461)
++++|+++.+. ...++.. +..+++|++|+|+++ .+.. ..+..+++|++|+|.++.+++. ....+.++
T Consensus 30 ~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N-----~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l 101 (192)
T 1w8a_A 30 HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRN-----QLTGIEPNAFEGASHIQELQLGENKIKEI--SNKMFLGL 101 (192)
T ss_dssp TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSS-----CCCCBCTTTTTTCTTCCEEECCSCCCCEE--CSSSSTTC
T ss_pred CCCEEECCCCc-CCccCCccccccCCCCCEEECCCC-----CCCCcCHhHcCCcccCCEEECCCCcCCcc--CHHHhcCC
Confidence 68888886554 2344442 567999999999999 5544 3567899999999999987653 23346778
Q ss_pred ccccceEEeeeecC
Q 012562 197 RLLEKLILKSCSFR 210 (461)
Q Consensus 197 p~Le~L~L~~c~~~ 210 (461)
+.|+.|+|++|.+.
T Consensus 102 ~~L~~L~L~~N~l~ 115 (192)
T 1w8a_A 102 HQLKTLNLYDNQIS 115 (192)
T ss_dssp TTCCEEECCSSCCC
T ss_pred CCCCEEECCCCcCC
Confidence 99999999998644
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.49 E-value=8.8e-06 Score=82.76 Aligned_cols=79 Identities=22% Similarity=0.252 Sum_probs=45.3
Q ss_pred CCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-C-CccccCcccEEEeeeEEEcChhhHHHHhhcCccc
Q 012562 122 NVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLL 199 (461)
Q Consensus 122 ~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~L 199 (461)
.++.|+++.+. ...+|. +..+++|+.|+|++| .+.. | .+..+++|++|+|++|.+++ ++ -+.++++|
T Consensus 442 ~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N-----~l~~lp~~~~~l~~L~~L~Ls~N~l~~---lp-~l~~l~~L 510 (567)
T 1dce_A 442 DVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHN-----RLRALPPALAALRCLEVLQASDNALEN---VD-GVANLPRL 510 (567)
T ss_dssp TCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSS-----CCCCCCGGGGGCTTCCEEECCSSCCCC---CG-GGTTCSSC
T ss_pred CceEEEecCCC-CCCCcC-ccccccCcEeecCcc-----cccccchhhhcCCCCCEEECCCCCCCC---Cc-ccCCCCCC
Confidence 46666664332 223554 556667777777766 4333 2 45566677777776666654 22 35566666
Q ss_pred cceEEeeeecCC
Q 012562 200 EKLILKSCSFRD 211 (461)
Q Consensus 200 e~L~L~~c~~~~ 211 (461)
+.|+|++|.+.+
T Consensus 511 ~~L~Ls~N~l~~ 522 (567)
T 1dce_A 511 QELLLCNNRLQQ 522 (567)
T ss_dssp CEEECCSSCCCS
T ss_pred cEEECCCCCCCC
Confidence 666666665433
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.47 E-value=8.1e-06 Score=70.71 Aligned_cols=100 Identities=19% Similarity=0.078 Sum_probs=51.6
Q ss_pred cCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEe-cCCcCeEEEeccCCCCCCCeEEEEecCCee
Q 012562 170 FSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDIS-STSLKSLTLDNFGGDESGNYKVKIACPNLV 248 (461)
Q Consensus 170 l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~~~~~~p~L~ 248 (461)
.++|++|+|.++.++. +...+.+++.|+.|+|++|.+.++..-.+. .++|++|.+.++.+...... ..-..++|+
T Consensus 30 ~~~l~~L~L~~n~i~~---ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~-~f~~l~~L~ 105 (193)
T 2wfh_A 30 PRDVTELYLDGNQFTL---VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPR-TFDGLKSLR 105 (193)
T ss_dssp CTTCCEEECCSSCCCS---CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT-TTTTCTTCC
T ss_pred CCCCCEEECCCCcCch---hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHH-HhCCCCCCC
Confidence 3567777777666653 223456667777777776654432211111 25666777766653111100 011356677
Q ss_pred eEEEecCCCCce---eeeCCCCceEEEE
Q 012562 249 SFNFLASWAPDF---AFEDLDSLQNAFI 273 (461)
Q Consensus 249 ~L~l~~~~~~~~---~~~~~~~L~~l~l 273 (461)
+|.++++....+ .+..+++|+.+++
T Consensus 106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (193)
T 2wfh_A 106 LLSLHGNDISVVPEGAFNDLSALSHLAI 133 (193)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred EEECCCCCCCeeChhhhhcCccccEEEe
Confidence 777766444332 2345566666666
No 137
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.45 E-value=3.2e-05 Score=76.33 Aligned_cols=41 Identities=24% Similarity=0.498 Sum_probs=37.3
Q ss_pred CCCCCCCCChHHHHHHhcCCChhHHHHHHHHhHhHHHhhcc
Q 012562 14 DGDRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYLWLS 54 (461)
Q Consensus 14 ~~D~is~LPd~iL~~Ils~Lp~~d~~~~s~vskrWr~lw~~ 54 (461)
..|.|+.||+||+.+||+|||.++.++++.|||+|+++...
T Consensus 11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 47899999999999999999999999999999999976443
No 138
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.41 E-value=3.8e-05 Score=64.68 Aligned_cols=81 Identities=12% Similarity=0.047 Sum_probs=58.1
Q ss_pred CCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccCC---Cccc----cCcccEEEeeeEE-EcChhhHHHHh
Q 012562 122 NVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKLP---FSVG----FSRLKSLDLHNVE-FLDHNLLHKFV 193 (461)
Q Consensus 122 ~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~~---~~~~----l~~L~~L~L~~~~-~~~~~~l~~l~ 193 (461)
.+++|+++.......--..+..|++|++|+|++|. .+.+. .... +++|++|+|++|. +++. ++..+
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~----~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~-Gl~~L- 135 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH----YIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK-GIIAL- 135 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT----TCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH-HHHHG-
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC----ccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH-HHHHH-
Confidence 68999997553221111234579999999999993 24441 1222 4589999999985 7777 88775
Q ss_pred hcCccccceEEeeee
Q 012562 194 SSRRLLEKLILKSCS 208 (461)
Q Consensus 194 ~~cp~Le~L~L~~c~ 208 (461)
+.||+|+.|+|++|.
T Consensus 136 ~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 136 HHFRNLKYLFLSDLP 150 (176)
T ss_dssp GGCTTCCEEEEESCT
T ss_pred hcCCCCCEEECCCCC
Confidence 579999999999995
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.41 E-value=1.6e-05 Score=67.61 Aligned_cols=120 Identities=18% Similarity=0.094 Sum_probs=60.5
Q ss_pred ccEEEeceeccccccccCCCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEE-ecCCcCeE
Q 012562 147 LEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDI-SSTSLKSL 225 (461)
Q Consensus 147 L~~L~L~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i-~~~~L~~L 225 (461)
.+.++++++ .+........++|++|+|.++.+.+ .....+.+++.|+.|++++|.+.++..-.+ ..++|+.|
T Consensus 9 ~~~l~~~~~-----~l~~~p~~~~~~l~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 81 (177)
T 2o6r_A 9 GTEIRCNSK-----GLTSVPTGIPSSATRLELESNKLQS--LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTIL 81 (177)
T ss_dssp TTEEECCSS-----CCSSCCTTCCTTCSEEECCSSCCCC--CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCEEEecCC-----CCccCCCCCCCCCcEEEeCCCcccE--eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEE
Confidence 455565555 4433112234567777777666553 222334566777777777665433221111 12567777
Q ss_pred EEeccCCCCCCCeEEEEecCCeeeEEEecCCCCcee---eeCCCCceEEEEE
Q 012562 226 TLDNFGGDESGNYKVKIACPNLVSFNFLASWAPDFA---FEDLDSLQNAFIF 274 (461)
Q Consensus 226 ~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~L~~l~l~ 274 (461)
.+.++.+..... ...-..++|++|+++++....+. +..+++|+.+++.
T Consensus 82 ~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 82 YLHENKLQSLPN-GVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp ECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred ECCCCCccccCH-HHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence 777665411100 00113566777777664433222 3445666666663
No 140
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.31 E-value=5.4e-05 Score=72.44 Aligned_cols=84 Identities=18% Similarity=0.091 Sum_probs=62.3
Q ss_pred cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcChhhHHHHhhcCc
Q 012562 121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR 197 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp 197 (461)
.++++|+|+.+....-.|..+..+++|++|+|++| .+.. ..+..+++|++|+|.++.+..- ....+.+++
T Consensus 64 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-----~l~~~~~~~~~~l~~L~~L~L~~N~i~~~--~~~~~~~l~ 136 (361)
T 2xot_A 64 TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-----HLHTLDEFLFSDLQALEVLLLYNNHIVVV--DRNAFEDMA 136 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-----CCCEECTTTTTTCTTCCEEECCSSCCCEE--CTTTTTTCT
T ss_pred cccCEEECCCCcCCccChhhccCCCCCCEEECCCC-----cCCcCCHHHhCCCcCCCEEECCCCcccEE--CHHHhCCcc
Confidence 47899998665433333345667999999999999 5544 2467899999999999987642 234467889
Q ss_pred cccceEEeeeecCC
Q 012562 198 LLEKLILKSCSFRD 211 (461)
Q Consensus 198 ~Le~L~L~~c~~~~ 211 (461)
.|+.|+|++|.+..
T Consensus 137 ~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 137 QLQKLYLSQNQISR 150 (361)
T ss_dssp TCCEEECCSSCCCS
T ss_pred cCCEEECCCCcCCe
Confidence 99999999986543
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.30 E-value=9.4e-05 Score=62.45 Aligned_cols=87 Identities=18% Similarity=0.153 Sum_probs=48.1
Q ss_pred eCCCCcccCCCccEEEeceeccccccccC--C-CccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCc
Q 012562 136 ELPHCLVTCESLEALKLACRQLRMCVLKL--P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDF 212 (461)
Q Consensus 136 ~lp~~l~~~~~L~~L~L~~~~~~~~~l~~--~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~ 212 (461)
.+|..+. ++|++|+|+++ .+.. + .+..+++|++|+|.++.++.- ....+.+++.|+.|+|++|.+.++
T Consensus 23 ~ip~~~~--~~l~~L~L~~N-----~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l--~~~~f~~l~~L~~L~L~~N~l~~~ 93 (170)
T 3g39_A 23 SVPTGIP--TTTQVLYLYDN-----QITKLEPGVFDRLTQLTRLDLDNNQLTVL--PAGVFDKLTQLTQLSLNDNQLKSI 93 (170)
T ss_dssp SCCSCCC--TTCSEEECCSS-----CCCCCCTTTTTTCTTCSEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSCCCCC
T ss_pred ccCccCC--CCCcEEEcCCC-----cCCccChhhhcCcccCCEEECCCCCcCcc--ChhhccCCCCCCEEECCCCccCEe
Confidence 3554442 56777777776 4433 2 345667777777776666542 223345667777777777654432
Q ss_pred eEEEE-ecCCcCeEEEeccC
Q 012562 213 KILDI-SSTSLKSLTLDNFG 231 (461)
Q Consensus 213 ~~~~i-~~~~L~~L~l~~~~ 231 (461)
..-.+ ..++|+.|.+.+|.
T Consensus 94 ~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 94 PRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CTTTTTTCTTCCEEECCSSC
T ss_pred CHHHhcCCCCCCEEEeCCCC
Confidence 21111 12566677766665
No 142
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.27 E-value=3.8e-05 Score=78.04 Aligned_cols=84 Identities=24% Similarity=0.151 Sum_probs=69.0
Q ss_pred cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccc
Q 012562 121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLL 199 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~L 199 (461)
.+++.|+|+.+... .+|..+..+++|+.|+|++| .+.. |.+..+++|++|+|++|.+++. .....+.+++.|
T Consensus 463 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N-----~l~~lp~l~~l~~L~~L~Ls~N~l~~~-~~p~~l~~l~~L 535 (567)
T 1dce_A 463 LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDN-----ALENVDGVANLPRLQELLLCNNRLQQS-AAIQPLVSCPRL 535 (567)
T ss_dssp TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSS-----CCCCCGGGTTCSSCCEEECCSSCCCSS-STTGGGGGCTTC
T ss_pred ccCcEeecCccccc-ccchhhhcCCCCCEEECCCC-----CCCCCcccCCCCCCcEEECCCCCCCCC-CCcHHHhcCCCC
Confidence 58999999776534 88999999999999999999 5555 5677899999999999988753 214557889999
Q ss_pred cceEEeeeecCC
Q 012562 200 EKLILKSCSFRD 211 (461)
Q Consensus 200 e~L~L~~c~~~~ 211 (461)
+.|+|++|.+.+
T Consensus 536 ~~L~L~~N~l~~ 547 (567)
T 1dce_A 536 VLLNLQGNSLCQ 547 (567)
T ss_dssp CEEECTTSGGGG
T ss_pred CEEEecCCcCCC
Confidence 999999987543
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.26 E-value=0.00011 Score=62.32 Aligned_cols=88 Identities=15% Similarity=0.105 Sum_probs=49.0
Q ss_pred eeCCCCcccCCCccEEEeceeccccccccC--C-CccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCC
Q 012562 135 TELPHCLVTCESLEALKLACRQLRMCVLKL--P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRD 211 (461)
Q Consensus 135 ~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~--~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~ 211 (461)
..+|..+. ++|++|+|+++ .+.. | .+..+++|++|+|.++.++.- ...++.++++|+.|+|++|.+.+
T Consensus 25 ~~iP~~~~--~~L~~L~Ls~N-----~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i--~~~~~~~l~~L~~L~L~~N~l~~ 95 (174)
T 2r9u_A 25 ASVPAGIP--TDKQRLWLNNN-----QITKLEPGVFDHLVNLQQLYFNSNKLTAI--PTGVFDKLTQLTQLDLNDNHLKS 95 (174)
T ss_dssp SSCCSCCC--TTCSEEECCSS-----CCCCCCTTTTTTCTTCCEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSCCCC
T ss_pred CccCCCcC--CCCcEEEeCCC-----CccccCHHHhcCCcCCCEEECCCCCCCcc--ChhHhCCcchhhEEECCCCccce
Confidence 34555443 56777777777 4433 2 345667777777777666542 12234566777777777765443
Q ss_pred ceEEEEe-cCCcCeEEEeccC
Q 012562 212 FKILDIS-STSLKSLTLDNFG 231 (461)
Q Consensus 212 ~~~~~i~-~~~L~~L~l~~~~ 231 (461)
+..-.+. .++|+.|.+.+|.
T Consensus 96 l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 96 IPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCTTTTTTCTTCSEEECCSSC
T ss_pred eCHHHhccccCCCEEEeCCCC
Confidence 2211111 2567777776665
No 144
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.21 E-value=0.00016 Score=70.90 Aligned_cols=38 Identities=32% Similarity=0.602 Sum_probs=35.8
Q ss_pred CCCCCCCCChHHHHHHhcCCChhHHHHHHHHhHhHHHh
Q 012562 14 DGDRLCSLPEPVIHQIFSFMETIDVVRASAVSRKWRYL 51 (461)
Q Consensus 14 ~~D~is~LPd~iL~~Ils~Lp~~d~~~~s~vskrWr~l 51 (461)
..|.++.||+|++.+||+||+.+|.++++.|||+|+.+
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~ 52 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence 47999999999999999999999999999999999863
No 145
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.16 E-value=0.00011 Score=72.07 Aligned_cols=38 Identities=21% Similarity=0.519 Sum_probs=35.4
Q ss_pred CCCCCCCCChH----HHHHHhcCCChhHHHHHHHHhHhHHHh
Q 012562 14 DGDRLCSLPEP----VIHQIFSFMETIDVVRASAVSRKWRYL 51 (461)
Q Consensus 14 ~~D~is~LPd~----iL~~Ils~Lp~~d~~~~s~vskrWr~l 51 (461)
..|.|+.||+| |+.+||+||+.++.++++.|||+|+.+
T Consensus 7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~ 48 (435)
T 1p22_A 7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV 48 (435)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 36899999999 999999999999999999999999953
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.14 E-value=6.9e-05 Score=63.55 Aligned_cols=101 Identities=13% Similarity=-0.038 Sum_probs=56.4
Q ss_pred ccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEE-ecCCcCe
Q 012562 147 LEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDI-SSTSLKS 224 (461)
Q Consensus 147 L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i-~~~~L~~ 224 (461)
-+.++++++ .+.. |. .-.++|++|+|.++.+.+- ....+.+++.|+.|+|++|.+.++..-.. ..++|+.
T Consensus 14 ~~~l~~~~n-----~l~~iP~-~~~~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~ 85 (174)
T 2r9u_A 14 QTLVNCQNI-----RLASVPA-GIPTDKQRLWLNNNQITKL--EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQ 85 (174)
T ss_dssp SSEEECCSS-----CCSSCCS-CCCTTCSEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CcEEEeCCC-----CCCccCC-CcCCCCcEEEeCCCCcccc--CHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhE
Confidence 356677766 4444 32 1236777777777776542 23446677777777777776444321111 1267777
Q ss_pred EEEeccCCCCCCCeEEEEecCCeeeEEEecCC
Q 012562 225 LTLDNFGGDESGNYKVKIACPNLVSFNFLASW 256 (461)
Q Consensus 225 L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 256 (461)
|.+.+|.+..... ...-.+++|++|.+.++.
T Consensus 86 L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 86 LDLNDNHLKSIPR-GAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp EECCSSCCCCCCT-TTTTTCTTCSEEECCSSC
T ss_pred EECCCCccceeCH-HHhccccCCCEEEeCCCC
Confidence 7777776421110 001145677777777753
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.12 E-value=7.4e-05 Score=63.09 Aligned_cols=102 Identities=14% Similarity=-0.013 Sum_probs=56.1
Q ss_pred CccEEEeceeccccccccC-CCccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEE-ecCCcC
Q 012562 146 SLEALKLACRQLRMCVLKL-PFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDI-SSTSLK 223 (461)
Q Consensus 146 ~L~~L~L~~~~~~~~~l~~-~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i-~~~~L~ 223 (461)
+.+.++++++ .+.. |. .-.++|++|+|.++.++.- ....+.+++.|+.|+|++|.+.++..-.. ..++|+
T Consensus 10 ~~~~l~~s~n-----~l~~ip~-~~~~~l~~L~L~~N~i~~~--~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~ 81 (170)
T 3g39_A 10 SGTTVDCSGK-----SLASVPT-GIPTTTQVLYLYDNQITKL--EPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLT 81 (170)
T ss_dssp ETTEEECTTS-----CCSSCCS-CCCTTCSEEECCSSCCCCC--CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCEEEeCCC-----CcCccCc-cCCCCCcEEEcCCCcCCcc--ChhhhcCcccCCEEECCCCCcCccChhhccCCCCCC
Confidence 3566777776 5444 32 1236777777777766542 23345667777777777766443322111 125677
Q ss_pred eEEEeccCCCCCCCeEEEEecCCeeeEEEecCC
Q 012562 224 SLTLDNFGGDESGNYKVKIACPNLVSFNFLASW 256 (461)
Q Consensus 224 ~L~l~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 256 (461)
.|.+.+|.+..... ...-.+++|++|.++++.
T Consensus 82 ~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 82 QLSLNDNQLKSIPR-GAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp EEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC
T ss_pred EEECCCCccCEeCH-HHhcCCCCCCEEEeCCCC
Confidence 77777766421110 001145677777777643
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.11 E-value=0.00017 Score=62.48 Aligned_cols=101 Identities=14% Similarity=0.149 Sum_probs=74.3
Q ss_pred hcCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-CC-ccccCcccEEEeeeEEEcChhhHHHHhhcCc
Q 012562 120 RRNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-PF-SVGFSRLKSLDLHNVEFLDHNLLHKFVSSRR 197 (461)
Q Consensus 120 ~~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~-~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp 197 (461)
.+++++|+++.+. ...+| .+..+++|++|+|++| .+.. |. ...+++|++|+|.++.+++- . -+.+++
T Consensus 47 l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n-----~l~~l~~~~~~~~~L~~L~L~~N~l~~l---~-~~~~l~ 115 (198)
T 1ds9_A 47 LKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRN-----LIKKIENLDAVADTLEELWISYNQIASL---S-GIEKLV 115 (198)
T ss_dssp TTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEE-----EECSCSSHHHHHHHCSEEEEEEEECCCH---H-HHHHHH
T ss_pred CCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCC-----CcccccchhhcCCcCCEEECcCCcCCcC---C-ccccCC
Confidence 3589999995543 23366 6777999999999999 5555 43 34568999999999988753 3 367789
Q ss_pred cccceEEeeeecCCceEE-EE-ecCCcCeEEEeccC
Q 012562 198 LLEKLILKSCSFRDFKIL-DI-SSTSLKSLTLDNFG 231 (461)
Q Consensus 198 ~Le~L~L~~c~~~~~~~~-~i-~~~~L~~L~l~~~~ 231 (461)
.|+.|++++|.+.+...+ .+ ..++|++|.+.+|.
T Consensus 116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 999999999986654321 11 24789999998776
No 149
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.10 E-value=0.0016 Score=61.09 Aligned_cols=61 Identities=15% Similarity=0.020 Sum_probs=32.6
Q ss_pred HhcCCCccEEEEecchhhhhccccccccCCcccCccc-EEEEEEeCCCcchhhHhhhhccCCCcceEEEEec
Q 012562 295 LNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLK-SLVLSVSMADWVVPSIISLLNCSPNLEALTIYFE 365 (461)
Q Consensus 295 l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~-~L~l~~~~~~~~~l~~~~lL~~~p~L~~L~l~~~ 365 (461)
+.++++|+.|++..+ +..+..+ .+. .+.+|+ .|.+...- ...-.. .+..|++|+.|++...
T Consensus 246 F~~~~~L~~l~l~~n-i~~I~~~----aF~-~~~~L~~~l~l~~~l--~~I~~~--aF~~c~~L~~l~l~~n 307 (329)
T 3sb4_A 246 FAQKKYLLKIKLPHN-LKTIGQR----VFS-NCGRLAGTLELPASV--TAIEFG--AFMGCDNLRYVLATGD 307 (329)
T ss_dssp TTTCTTCCEEECCTT-CCEECTT----TTT-TCTTCCEEEEECTTC--CEECTT--TTTTCTTEEEEEECSS
T ss_pred hhCCCCCCEEECCcc-cceehHH----Hhh-CChhccEEEEEcccc--eEEchh--hhhCCccCCEEEeCCC
Confidence 346777888887765 3323221 122 344666 66663311 111111 4567888888887543
No 150
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.08 E-value=3.4e-05 Score=80.97 Aligned_cols=104 Identities=13% Similarity=0.008 Sum_probs=48.8
Q ss_pred cccCCCccEEEeceeccccccccC-C-CccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeecCCceEEEEe
Q 012562 141 LVTCESLEALKLACRQLRMCVLKL-P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSFRDFKILDIS 218 (461)
Q Consensus 141 l~~~~~L~~L~L~~~~~~~~~l~~-~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~~~~i~ 218 (461)
+..+++|+.|+|++| .+.. | ....+++|++|+|.+|.++. +..-+.+++.|+.|+|++|.+..+. ..+.
T Consensus 220 ~~~l~~L~~L~Ls~n-----~l~~l~~~~~~l~~L~~L~Ls~N~l~~---lp~~~~~l~~L~~L~Ls~N~l~~lp-~~~~ 290 (727)
T 4b8c_D 220 KYDDQLWHALDLSNL-----QIFNISANIFKYDFLTRLYLNGNSLTE---LPAEIKNLSNLRVLDLSHNRLTSLP-AELG 290 (727)
T ss_dssp --CCCCCCEEECTTS-----CCSCCCGGGGGCCSCSCCBCTTSCCSC---CCGGGGGGTTCCEEECTTSCCSSCC-SSGG
T ss_pred hccCCCCcEEECCCC-----CCCCCChhhcCCCCCCEEEeeCCcCcc---cChhhhCCCCCCEEeCcCCcCCccC-hhhc
Confidence 334556666666666 3333 2 33355666666666655542 2223455566666666665433210 0111
Q ss_pred -cCCcCeEEEeccCCCCCCCeEEEE-ecCCeeeEEEecCC
Q 012562 219 -STSLKSLTLDNFGGDESGNYKVKI-ACPNLVSFNFLASW 256 (461)
Q Consensus 219 -~~~L~~L~l~~~~~~~~~~~~~~~-~~p~L~~L~l~~~~ 256 (461)
.++|+.|.+.+|.+ ..+...+ .+++|++|+++++.
T Consensus 291 ~l~~L~~L~L~~N~l---~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMV---TTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp GGTTCSEEECCSSCC---CCCCSSTTSCTTCCCEECTTSC
T ss_pred CCCCCCEEECCCCCC---CccChhhhcCCCccEEeCCCCc
Confidence 24555666555543 1111112 34566666665543
No 151
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.04 E-value=3.6e-05 Score=80.73 Aligned_cols=102 Identities=17% Similarity=0.140 Sum_probs=75.1
Q ss_pred cCCeEEEEEEcceeeeCCCCcccCCCccEEEeceeccccccccC-C-CccccCcccEEEeeeEEEcChhhHHHHhhcCcc
Q 012562 121 RNVQVFDLTVYGEVTELPHCLVTCESLEALKLACRQLRMCVLKL-P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRL 198 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~ 198 (461)
..++.|+|+.+. ...+|..++.+++|++|+|++| .+.. | .+..+++|++|+|++|.++. +..-+.+++.
T Consensus 224 ~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N-----~l~~lp~~~~~l~~L~~L~Ls~N~l~~---lp~~~~~l~~ 294 (727)
T 4b8c_D 224 QLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGN-----SLTELPAEIKNLSNLRVLDLSHNRLTS---LPAELGSCFQ 294 (727)
T ss_dssp CCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTS-----CCSCCCGGGGGGTTCCEEECTTSCCSS---CCSSGGGGTT
T ss_pred CCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCC-----cCcccChhhhCCCCCCEEeCcCCcCCc---cChhhcCCCC
Confidence 467888885544 3478888888999999999999 5544 3 46789999999999988763 3444678899
Q ss_pred ccceEEeeeecCCceEEEEe-cCCcCeEEEeccCC
Q 012562 199 LEKLILKSCSFRDFKILDIS-STSLKSLTLDNFGG 232 (461)
Q Consensus 199 Le~L~L~~c~~~~~~~~~i~-~~~L~~L~l~~~~~ 232 (461)
|+.|+|++|.+..+.. .+. .++|+.|.+.+|.+
T Consensus 295 L~~L~L~~N~l~~lp~-~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 295 LKYFYFFDNMVTTLPW-EFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp CSEEECCSSCCCCCCS-STTSCTTCCCEECTTSCC
T ss_pred CCEEECCCCCCCccCh-hhhcCCCccEEeCCCCcc
Confidence 9999999986543321 122 37899999988875
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.01 E-value=9.8e-05 Score=70.13 Aligned_cols=91 Identities=19% Similarity=0.168 Sum_probs=59.1
Q ss_pred eeeCCCCcccCCCccEEEece-eccccccccC-C--CccccCcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeec
Q 012562 134 VTELPHCLVTCESLEALKLAC-RQLRMCVLKL-P--FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSF 209 (461)
Q Consensus 134 ~~~lp~~l~~~~~L~~L~L~~-~~~~~~~l~~-~--~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~ 209 (461)
...+|. +..+++|+.|+|++ + .+.. + .+..+++|+.|+|++|.+.. .....+.+++.|+.|+|++|.+
T Consensus 21 l~~ip~-l~~~~~L~~L~l~~~n-----~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 21 LDSLHH-LPGAENLTELYIENQQ-----HLQHLELRDLRGLGELRNLTIVKSGLRF--VAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp CTTTTT-SCSCSCCSEEECCSCS-----SCCEECGGGSCSCCCCSEEECCSSCCCE--ECTTGGGSCSCCCEEECCSSCC
T ss_pred CCccCC-CCCCCCeeEEEccCCC-----CCCCcChhHhccccCCCEEECCCCccce--eCHHHhcCCcCCCEEeCCCCcc
Confidence 445777 77788888888885 7 4444 2 45678888888888887665 2334567788888888888765
Q ss_pred CCceEEEEecCCcCeEEEeccCC
Q 012562 210 RDFKILDISSTSLKSLTLDNFGG 232 (461)
Q Consensus 210 ~~~~~~~i~~~~L~~L~l~~~~~ 232 (461)
.++..-.....+|+.|.+.+|.+
T Consensus 93 ~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 93 ESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp SCCCSTTTCSCCCCEEECCSSCC
T ss_pred ceeCHHHcccCCceEEEeeCCCc
Confidence 44321111122377777776654
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.98 E-value=0.00021 Score=61.15 Aligned_cols=74 Identities=19% Similarity=0.156 Sum_probs=34.0
Q ss_pred HHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEE--EEeCCCcch-hhHhhhhccCCCcceEEEEec
Q 012562 291 LSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVL--SVSMADWVV-PSIISLLNCSPNLEALTIYFE 365 (461)
Q Consensus 291 ~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l--~~~~~~~~~-l~~~~lL~~~p~L~~L~l~~~ 365 (461)
+...+...++|+.|+|++|.+...........+. ...+|++|++ ..+....+. ......++.++.|+.|++..+
T Consensus 85 l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~-~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 85 LAEMLKVNNTLKSLNVESNFISGSGILALVEALQ-SNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGG-GCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHH-hCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 3444445555666666665543211111112222 3345666666 444332222 122225566667777766554
No 154
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.80 E-value=0.0006 Score=64.14 Aligned_cols=66 Identities=11% Similarity=0.073 Sum_probs=42.0
Q ss_pred HHHHHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCcchhhHhhhhccCCCcc-eEEEEe
Q 012562 290 ILSKLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWVVPSIISLLNCSPNLE-ALTIYF 364 (461)
Q Consensus 290 ~~~~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~l~~~~lL~~~p~L~-~L~l~~ 364 (461)
.+..+...+++|+.|++..+.+..+..+. +. .+.+|++|.+..+- ...-.. .+..|++|+ .+.+..
T Consensus 217 ~~~~l~~~~~~L~~l~L~~n~i~~I~~~a----F~-~~~~L~~l~l~~ni--~~I~~~--aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 217 DFKLIRDYMPNLVSLDISKTNATTIPDFT----FA-QKKYLLKIKLPHNL--KTIGQR--VFSNCGRLAGTLELPA 283 (329)
T ss_dssp HHHHHHHHCTTCCEEECTTBCCCEECTTT----TT-TCTTCCEEECCTTC--CEECTT--TTTTCTTCCEEEEECT
T ss_pred HHHHHHHhcCCCeEEECCCCCcceecHhh----hh-CCCCCCEEECCccc--ceehHH--HhhCChhccEEEEEcc
Confidence 34555556899999999987665444322 22 45688888885431 111112 467899998 888865
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.10 E-value=0.00068 Score=65.64 Aligned_cols=14 Identities=7% Similarity=0.095 Sum_probs=7.8
Q ss_pred hhcCccccceEEee
Q 012562 193 VSSRRLLEKLILKS 206 (461)
Q Consensus 193 ~~~cp~Le~L~L~~ 206 (461)
+.+|+.|+.+.+..
T Consensus 222 F~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 222 FLKTSQLKTIEIPE 235 (401)
T ss_dssp TTTCTTCCCEECCT
T ss_pred hhCCCCCCEEecCC
Confidence 44566666665543
No 156
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.69 E-value=0.0028 Score=59.86 Aligned_cols=80 Identities=20% Similarity=0.167 Sum_probs=53.5
Q ss_pred CCeEEEEEE-cceeeeCC-CCcccCCCccEEEeceeccccccccC--C-CccccCcccEEEeeeEEEcChhhHHHHhhcC
Q 012562 122 NVQVFDLTV-YGEVTELP-HCLVTCESLEALKLACRQLRMCVLKL--P-FSVGFSRLKSLDLHNVEFLDHNLLHKFVSSR 196 (461)
Q Consensus 122 ~l~~L~l~~-~~~~~~lp-~~l~~~~~L~~L~L~~~~~~~~~l~~--~-~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~c 196 (461)
++++|+|+. +. ...+| ..+..+++|+.|+|++| .+.. + .+..+++|++|+|++|.+..- ...++...
T Consensus 32 ~L~~L~l~~~n~-l~~~~~~~~~~l~~L~~L~l~~N-----~l~~~~~~~~~~l~~L~~L~l~~N~l~~~--~~~~~~~~ 103 (347)
T 2ifg_A 32 NLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKS-----GLRFVAPDAFHFTPRLSRLNLSFNALESL--SWKTVQGL 103 (347)
T ss_dssp CCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSS-----CCCEECTTGGGSCSCCCEEECCSSCCSCC--CSTTTCSC
T ss_pred CeeEEEccCCCC-CCCcChhHhccccCCCEEECCCC-----ccceeCHHHhcCCcCCCEEeCCCCcccee--CHHHcccC
Confidence 578888864 43 34455 34556888999999888 5544 2 456788899999988877642 22233444
Q ss_pred ccccceEEeeeecC
Q 012562 197 RLLEKLILKSCSFR 210 (461)
Q Consensus 197 p~Le~L~L~~c~~~ 210 (461)
+ |+.|+|.+|.+.
T Consensus 104 ~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 104 S-LQELVLSGNPLH 116 (347)
T ss_dssp C-CCEEECCSSCCC
T ss_pred C-ceEEEeeCCCcc
Confidence 4 888888887643
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.52 E-value=0.0046 Score=52.67 Aligned_cols=130 Identities=12% Similarity=0.154 Sum_probs=76.8
Q ss_pred HHHHHHHHhcCCCccEEEEecc-hhhhhccccccccCCcccCcccEEEEEEeCCCcc-hhhHhhhhccCCCcceEEEEec
Q 012562 288 CHILSKLLNELCEVKALKLSTA-FLRFHFVLEERGFIPNSFNYLKSLVLSVSMADWV-VPSIISLLNCSPNLEALTIYFE 365 (461)
Q Consensus 288 ~~~~~~~l~~l~~l~~L~l~~~-~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~l~~~~lL~~~p~L~~L~l~~~ 365 (461)
...+...+...+.+++|+|+++ .+..-........+. ..++|++|+++.+....+ ...+...+...+.|+.|+|..+
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~-~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALK-TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHT-TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHH-hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 4457778888889999999887 654221111122233 456899999977765333 2223336778889999998876
Q ss_pred cCCCccccccCcCccc--cccceeEEEE--Eee-cCChhHHHHHHHHHhcCcCcceEEEEcc
Q 012562 366 GEDCDDWKISNKSIFC--LTCHLKTVEL--IHV-AGDENELELVRFLLKNGHVLKKLSFSWM 422 (461)
Q Consensus 366 ~~~~~~~~~~~~~~~~--~~~~Lk~v~i--~~~-~g~~~e~~~~~~ll~~a~~Le~~~i~~~ 422 (461)
......... . ... ..++|+.+.+ .+- -|..+...+++ .++..+.|+++.+...
T Consensus 104 ~i~~~g~~~--l-~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 104 FISGSGILA--L-VEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFT 161 (185)
T ss_dssp CCCHHHHHH--H-HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCS
T ss_pred cCCHHHHHH--H-HHHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCC
Confidence 532100000 0 111 2356888888 422 23344444554 5577789999998743
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.34 E-value=0.0032 Score=56.91 Aligned_cols=78 Identities=15% Similarity=0.115 Sum_probs=45.0
Q ss_pred cCCeEEEEEEcceee--eCCCCcccCCCccEEEeceeccccccccC-CCccccC--cccEEEeeeEEEcCh-----hhHH
Q 012562 121 RNVQVFDLTVYGEVT--ELPHCLVTCESLEALKLACRQLRMCVLKL-PFSVGFS--RLKSLDLHNVEFLDH-----NLLH 190 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~--~lp~~l~~~~~L~~L~L~~~~~~~~~l~~-~~~~~l~--~L~~L~L~~~~~~~~-----~~l~ 190 (461)
+.++.|+|+.+.... .+|..+..+++|+.|+|++| .+.. .....+. +|++|+|.+|.+.+. .-..
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-----~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-----ELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-----CCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-----ccCCchhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 467777775543222 44454556777777777777 4443 2223333 777777777765531 1223
Q ss_pred HHhhcCccccceE
Q 012562 191 KFVSSRRLLEKLI 203 (461)
Q Consensus 191 ~l~~~cp~Le~L~ 203 (461)
.++..+|.|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 4566777777664
No 159
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.19 E-value=0.0011 Score=64.17 Aligned_cols=63 Identities=10% Similarity=0.037 Sum_probs=34.6
Q ss_pred eCCCCcccCCCccEEEeceeccccccccCCCccccCcccEEEeeeE--EEcChhhHHHHhhcCccccceEEeee
Q 012562 136 ELPHCLVTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNV--EFLDHNLLHKFVSSRRLLEKLILKSC 207 (461)
Q Consensus 136 ~lp~~l~~~~~L~~L~L~~~~~~~~~l~~~~~~~l~~L~~L~L~~~--~~~~~~~l~~l~~~cp~Le~L~L~~c 207 (461)
.++...|.-.+|+.+.|..+ ...+....+.. .+|+++.|... .+.. ..+.+|++|+.+.+..+
T Consensus 126 ~I~~~aF~~~~L~~i~l~~~---i~~I~~~aF~~-~~L~~i~lp~~l~~I~~-----~aF~~c~~L~~l~l~~n 190 (401)
T 4fdw_A 126 SIPKDAFRNSQIAKVVLNEG---LKSIGDMAFFN-STVQEIVFPSTLEQLKE-----DIFYYCYNLKKADLSKT 190 (401)
T ss_dssp EECTTTTTTCCCSEEECCTT---CCEECTTTTTT-CCCCEEECCTTCCEECS-----STTTTCTTCCEEECTTS
T ss_pred EehHhhcccCCccEEEeCCC---ccEECHHhcCC-CCceEEEeCCCccEehH-----HHhhCcccCCeeecCCC
Confidence 33444443236888887654 11233333334 35777777641 1221 23677888888888764
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=93.79 E-value=0.017 Score=52.16 Aligned_cols=62 Identities=21% Similarity=0.087 Sum_probs=40.3
Q ss_pred HHHhcCCCccEEEEecchhhhhccccccccCCcccCcccEEEEEEeCCCc------chhhHhhhhccCCCcceEE
Q 012562 293 KLLNELCEVKALKLSTAFLRFHFVLEERGFIPNSFNYLKSLVLSVSMADW------VVPSIISLLNCSPNLEALT 361 (461)
Q Consensus 293 ~~l~~l~~l~~L~l~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~------~~l~~~~lL~~~p~L~~L~ 361 (461)
..+..+++|+.|+|++|.+..+.. ...+. .+ +|++|.+..+.... ..... ++..+|+|+.|+
T Consensus 190 ~~~~~l~~L~~L~Ls~N~i~~~~~---l~~l~-~l-~L~~L~L~~Npl~~~~~~~~~y~~~--il~~~P~L~~LD 257 (267)
T 3rw6_A 190 SIVQKAPNLKILNLSGNELKSERE---LDKIK-GL-KLEELWLDGNSLCDTFRDQSTYISA--IRERFPKLLRLD 257 (267)
T ss_dssp THHHHSTTCCEEECTTSCCCSGGG---GGGGT-TS-CCSEEECTTSTTGGGCSSHHHHHHH--HHHHCTTCCEES
T ss_pred hHHhhCCCCCEEECCCCccCCchh---hhhcc-cC-CcceEEccCCcCccccCcchhHHHH--HHHHCcccCeEC
Confidence 445678899999999888765422 23333 33 88888887665421 22223 678899998883
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=86.73 E-value=0.04 Score=47.08 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=16.3
Q ss_pred cccEEEeeeEEEcCh--hhHHHHhhcCccccceEEeeee
Q 012562 172 RLKSLDLHNVEFLDH--NLLHKFVSSRRLLEKLILKSCS 208 (461)
Q Consensus 172 ~L~~L~L~~~~~~~~--~~l~~l~~~cp~Le~L~L~~c~ 208 (461)
.|++|+|.++.+.+. ..+...+..-..|+.|+|+.|.
T Consensus 71 ~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 71 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 444444444444433 2233333344445555555443
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=80.80 E-value=0.82 Score=38.88 Aligned_cols=130 Identities=12% Similarity=0.150 Sum_probs=78.8
Q ss_pred HHHHHHHHhcCCCccEEEEecc-hhhhhccccccccCCcccCcccEEEEEEeCC-CcchhhHhhhhccCCCcceEEEEec
Q 012562 288 CHILSKLLNELCEVKALKLSTA-FLRFHFVLEERGFIPNSFNYLKSLVLSVSMA-DWVVPSIISLLNCSPNLEALTIYFE 365 (461)
Q Consensus 288 ~~~~~~~l~~l~~l~~L~l~~~-~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~-~~~~l~~~~lL~~~p~L~~L~l~~~ 365 (461)
...+..++..-+.|++|+|+.+ .+..-........+. .-..|++|+|..+.. +.....+...|+.-..|+.|+|..+
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~-~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAAC-NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHT-TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHh-hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 4457777777788999999874 433211111112222 445899999987765 3333333337788889999999887
Q ss_pred cCCCccccccCcCccc--cccceeEEEEEe----ecCChhHHHHHHHHHhcCcCcceEEEEcc
Q 012562 366 GEDCDDWKISNKSIFC--LTCHLKTVELIH----VAGDENELELVRFLLKNGHVLKKLSFSWM 422 (461)
Q Consensus 366 ~~~~~~~~~~~~~~~~--~~~~Lk~v~i~~----~~g~~~e~~~~~~ll~~a~~Le~~~i~~~ 422 (461)
......- ..+ .+. .-..|+.+.+.+ .-|...+..+++.+ +.-+.|.++.+.+.
T Consensus 109 ~Ig~~Ga--~al-a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL-~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 109 FLTPELL--ARL-LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAI-EENESLLRVGISFA 167 (197)
T ss_dssp BCCHHHH--HHH-HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHH-HHCSSCCEEECCCC
T ss_pred cCCHHHH--HHH-HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHH-HhCCCcCeEeccCC
Confidence 6321000 000 011 224588888863 33667777788765 55577999888754
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=77.17 E-value=1.1 Score=42.77 Aligned_cols=15 Identities=7% Similarity=0.115 Sum_probs=8.8
Q ss_pred hcCCCccEEEEecch
Q 012562 296 NELCEVKALKLSTAF 310 (461)
Q Consensus 296 ~~l~~l~~L~l~~~~ 310 (461)
.+|++|+.+++.++.
T Consensus 354 ~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 354 SNCTALNNIEYSGSR 368 (394)
T ss_dssp TTCTTCCEEEESSCH
T ss_pred hCCCCCCEEEECCce
Confidence 356666666666554
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=65.68 E-value=4.2 Score=38.56 Aligned_cols=98 Identities=17% Similarity=0.271 Sum_probs=53.3
Q ss_pred CCeEEEEEEcceeeeCCCCcc-cCCCccEEEeceeccccccccCCCccccCcccEEEeeeE--EEcChhhHHHHhhcCcc
Q 012562 122 NVQVFDLTVYGEVTELPHCLV-TCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNV--EFLDHNLLHKFVSSRRL 198 (461)
Q Consensus 122 ~l~~L~l~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~~~~l~~~~~~~l~~L~~L~L~~~--~~~~~~~l~~l~~~cp~ 198 (461)
.++.+.+ +.....+....+ .|.+|+.+.+... ...+....+..|.+|+++.|... .+.+ ..+.+|.+
T Consensus 266 ~L~~i~l--p~~~~~I~~~aF~~c~~L~~i~l~~~---i~~I~~~aF~~c~~L~~i~lp~~v~~I~~-----~aF~~C~~ 335 (394)
T 4gt6_A 266 YLASVKM--PDSVVSIGTGAFMNCPALQDIEFSSR---ITELPESVFAGCISLKSIDIPEGITQILD-----DAFAGCEQ 335 (394)
T ss_dssp SCCEEEC--CTTCCEECTTTTTTCTTCCEEECCTT---CCEECTTTTTTCTTCCEEECCTTCCEECT-----TTTTTCTT
T ss_pred cccEEec--ccccceecCcccccccccccccCCCc---ccccCceeecCCCCcCEEEeCCcccEehH-----hHhhCCCC
Confidence 4555554 222223344333 4888888888653 11234446677888888888542 2222 24678888
Q ss_pred ccceEEeeeecCCceEEE-EecCCcCeEEEecc
Q 012562 199 LEKLILKSCSFRDFKILD-ISSTSLKSLTLDNF 230 (461)
Q Consensus 199 Le~L~L~~c~~~~~~~~~-i~~~~L~~L~l~~~ 230 (461)
|+.+.|-.. ...+..-. ..|++|+.+.+..+
T Consensus 336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 888888542 11111101 12467777777643
No 165
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=58.44 E-value=5.3 Score=37.84 Aligned_cols=76 Identities=17% Similarity=0.165 Sum_probs=49.8
Q ss_pred cCCeEEEEEEcceeeeCCCCc-ccCCCccEEEeceeccccccccCCCccccCcccEEEeeeEEEcChhhHHHHhhcCccc
Q 012562 121 RNVQVFDLTVYGEVTELPHCL-VTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLL 199 (461)
Q Consensus 121 ~~l~~L~l~~~~~~~~lp~~l-~~~~~L~~L~L~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~L 199 (461)
.+++.+.+. .....+.... ..|..|+.+.+.... ..+....+..+++|+.+.+....+.+. .+.+|..|
T Consensus 230 ~~l~~i~ip--~~~~~i~~~~f~~~~~l~~~~~~~~~---~~i~~~~F~~~~~l~~~~~~~~~i~~~-----~F~~~~~L 299 (394)
T 4fs7_A 230 TGVKNIIIP--DSFTELGKSVFYGCTDLESISIQNNK---LRIGGSLFYNCSGLKKVIYGSVIVPEK-----TFYGCSSL 299 (394)
T ss_dssp CCCCEEEEC--TTCCEECSSTTTTCSSCCEEEECCTT---CEECSCTTTTCTTCCEEEECSSEECTT-----TTTTCTTC
T ss_pred CCCceEEEC--CCceecccccccccccceeEEcCCCc---ceeeccccccccccceeccCceeeccc-----cccccccc
Confidence 356766662 2223344443 358999999987761 123335667788899988877766543 36789999
Q ss_pred cceEEee
Q 012562 200 EKLILKS 206 (461)
Q Consensus 200 e~L~L~~ 206 (461)
+.+.+..
T Consensus 300 ~~i~l~~ 306 (394)
T 4fs7_A 300 TEVKLLD 306 (394)
T ss_dssp CEEEECT
T ss_pred ccccccc
Confidence 9888854
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=58.34 E-value=6.9 Score=30.46 Aligned_cols=44 Identities=16% Similarity=0.133 Sum_probs=30.4
Q ss_pred eCCCCcccCCCccEEEeceeccccccccC---CCccccCcccEEEeeeEEEcCh
Q 012562 136 ELPHCLVTCESLEALKLACRQLRMCVLKL---PFSVGFSRLKSLDLHNVEFLDH 186 (461)
Q Consensus 136 ~lp~~l~~~~~L~~L~L~~~~~~~~~l~~---~~~~~l~~L~~L~L~~~~~~~~ 186 (461)
.+|..+ -++|+.|+|++| .+.. ..+..+++|++|+|.+|-+.-+
T Consensus 24 ~vP~~l--p~~l~~L~Ls~N-----~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd 70 (130)
T 3rfe_A 24 SLPTAF--PVDTTELVLTGN-----NLTALPPGLLDALPALRTAHLGANPWRCD 70 (130)
T ss_dssp TSCSCC--CTTCSEEECTTS-----CCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred cCCCCC--CcCCCEEECCCC-----cCCccChhhhhhccccCEEEecCCCeecc
Confidence 455432 237889999998 5544 2456788888998888876654
No 167
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=55.01 E-value=3.8 Score=32.02 Aligned_cols=37 Identities=11% Similarity=0.038 Sum_probs=28.8
Q ss_pred CcccEEEeeeEEEcChhhHHHHhhcCccccceEEeeeec
Q 012562 171 SRLKSLDLHNVEFLDHNLLHKFVSSRRLLEKLILKSCSF 209 (461)
Q Consensus 171 ~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le~L~L~~c~~ 209 (461)
++|++|+|.+|.++.- -..++...+.|+.|+|.+|.+
T Consensus 31 ~~l~~L~Ls~N~l~~l--~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 31 VDTTELVLTGNNLTAL--PPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TTCSEEECTTSCCSSC--CTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCEEECCCCcCCcc--ChhhhhhccccCEEEecCCCe
Confidence 4799999999988753 234567889999999998753
No 168
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=50.95 E-value=6 Score=37.43 Aligned_cols=81 Identities=19% Similarity=0.219 Sum_probs=48.9
Q ss_pred CCCCcc-cCCCccEEEeceeccccccccCCCccccCcccEEEeeeE--EEcChhhHHHHhhcCccccceEEeeeecCCce
Q 012562 137 LPHCLV-TCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNV--EFLDHNLLHKFVSSRRLLEKLILKSCSFRDFK 213 (461)
Q Consensus 137 lp~~l~-~~~~L~~L~L~~~~~~~~~l~~~~~~~l~~L~~L~L~~~--~~~~~~~l~~l~~~cp~Le~L~L~~c~~~~~~ 213 (461)
++...+ .|.+|+.+.+... ...+....+..+.+|+++.|... .+.+ ..+.+|.+|+.+.+..+ +.
T Consensus 288 i~~~~F~~~~~L~~i~l~~~---i~~I~~~aF~~c~~L~~i~lp~~v~~I~~-----~aF~~c~~L~~i~lp~~----l~ 355 (394)
T 4fs7_A 288 VPEKTFYGCSSLTEVKLLDS---VKFIGEEAFESCTSLVSIDLPYLVEEIGK-----RSFRGCTSLSNINFPLS----LR 355 (394)
T ss_dssp ECTTTTTTCTTCCEEEECTT---CCEECTTTTTTCTTCCEECCCTTCCEECT-----TTTTTCTTCCEECCCTT----CC
T ss_pred eccccccccccccccccccc---cceechhhhcCCCCCCEEEeCCcccEEhH-----HhccCCCCCCEEEECcc----cc
Confidence 444433 5889999888654 11334456677888999888542 1222 34678999998888542 22
Q ss_pred EEEE----ecCCcCeEEEec
Q 012562 214 ILDI----SSTSLKSLTLDN 229 (461)
Q Consensus 214 ~~~i----~~~~L~~L~l~~ 229 (461)
.+.- .|++|+.+.+..
T Consensus 356 ~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 356 KIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp EECTTTBTTCTTCCEEEEEG
T ss_pred EehHHHhhCCCCCCEEEECC
Confidence 2211 246777777653
No 169
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=47.81 E-value=7.9 Score=36.24 Aligned_cols=78 Identities=17% Similarity=0.258 Sum_probs=43.5
Q ss_pred CCeEEEEEEcceeeeCCCCcc-cCCCccEEEeceeccccccccCCCccccCcccEEEeeeEEEcChhhHHHHhhcCcccc
Q 012562 122 NVQVFDLTVYGEVTELPHCLV-TCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLE 200 (461)
Q Consensus 122 ~l~~L~l~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le 200 (461)
.++++.+ +.....+....+ .|.+|+.+.+... ...+....+..+++|+++.+....++. --...+.+|..|+
T Consensus 241 ~L~~i~l--p~~v~~I~~~aF~~~~~l~~i~l~~~---i~~i~~~aF~~c~~L~~i~l~~~~i~~--I~~~aF~~c~~L~ 313 (379)
T 4h09_A 241 ALDEIAI--PKNVTSIGSFLLQNCTALKTLNFYAK---VKTVPYLLCSGCSNLTKVVMDNSAIET--LEPRVFMDCVKLS 313 (379)
T ss_dssp SCCEEEE--CTTCCEECTTTTTTCTTCCEEEECCC---CSEECTTTTTTCTTCCEEEECCTTCCE--ECTTTTTTCTTCC
T ss_pred cceEEEc--CCCccEeCccccceeehhcccccccc---ceeccccccccccccccccccccccce--ehhhhhcCCCCCC
Confidence 4566655 222233444443 4788888887654 112333456678888888886432211 0012467788888
Q ss_pred ceEEee
Q 012562 201 KLILKS 206 (461)
Q Consensus 201 ~L~L~~ 206 (461)
.+.|..
T Consensus 314 ~i~lp~ 319 (379)
T 4h09_A 314 SVTLPT 319 (379)
T ss_dssp EEECCT
T ss_pred EEEcCc
Confidence 888753
No 170
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=33.89 E-value=21 Score=33.20 Aligned_cols=78 Identities=15% Similarity=0.186 Sum_probs=47.8
Q ss_pred CCeEEEEEEcceeeeCCCC-cccCCCccEEEeceeccccccccCCCccccCcccEEEeeeEEEcChhhHHHHhhcCcccc
Q 012562 122 NVQVFDLTVYGEVTELPHC-LVTCESLEALKLACRQLRMCVLKLPFSVGFSRLKSLDLHNVEFLDHNLLHKFVSSRRLLE 200 (461)
Q Consensus 122 ~l~~L~l~~~~~~~~lp~~-l~~~~~L~~L~L~~~~~~~~~l~~~~~~~l~~L~~L~L~~~~~~~~~~l~~l~~~cp~Le 200 (461)
.++.+.+. .....++.. +..|..|+.+.+... ...+....+..+.+|+++.+.... .. --...+.+|++|+
T Consensus 218 ~l~~i~~~--~~~~~i~~~~f~~~~~L~~i~lp~~---v~~I~~~aF~~~~~l~~i~l~~~i-~~--i~~~aF~~c~~L~ 289 (379)
T 4h09_A 218 NLKKITIT--SGVTTLGDGAFYGMKALDEIAIPKN---VTSIGSFLLQNCTALKTLNFYAKV-KT--VPYLLCSGCSNLT 289 (379)
T ss_dssp SCSEEECC--TTCCEECTTTTTTCSSCCEEEECTT---CCEECTTTTTTCTTCCEEEECCCC-SE--ECTTTTTTCTTCC
T ss_pred ccceeeec--cceeEEccccccCCccceEEEcCCC---ccEeCccccceeehhccccccccc-ee--ccccccccccccc
Confidence 45555442 212333333 345899999998665 113444566778899999886431 11 1123478999999
Q ss_pred ceEEeee
Q 012562 201 KLILKSC 207 (461)
Q Consensus 201 ~L~L~~c 207 (461)
.+.+..+
T Consensus 290 ~i~l~~~ 296 (379)
T 4h09_A 290 KVVMDNS 296 (379)
T ss_dssp EEEECCT
T ss_pred ccccccc
Confidence 9999764
No 171
>2agh_C Zinc finger protein HRX; transcription; NMR {Homo sapiens}
Probab=21.27 E-value=43 Score=17.81 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=15.9
Q ss_pred CChhHHHHHHHHHhcCcCcceE
Q 012562 396 GDENELELVRFLLKNGHVLKKL 417 (461)
Q Consensus 396 g~~~e~~~~~~ll~~a~~Le~~ 417 (461)
|+.--..++.|+|+|.|+.+.+
T Consensus 4 gnilpsdimdfvlkntpsmqal 25 (31)
T 2agh_C 4 GNILPSDIMDFVLKNTPSMQAL 25 (31)
T ss_dssp CCSSCHHHHHHHHHHSCCCCCC
T ss_pred cccChHHHHHHHHhCChhHHHH
Confidence 3333457889999999988754
Done!