BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012563
(460 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 251 bits (640), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 149/478 (31%), Positives = 244/478 (51%), Gaps = 46/478 (9%)
Query: 17 VILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFN--------SPNSCN-YPHFDFHS 67
V++ P P QGHINP+ +L +L+ +GF IT ++T++N P + + + F+F S
Sbjct: 11 VVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNFES 70
Query: 68 ISDGLT-----DPSAEDSTTILITLNAKCMVPFRNCLAKLVSNTNNNNAQEDSVACLITD 122
I DGLT ++D T+ ++ + P+ L +L +TN V CL++D
Sbjct: 71 IPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTN-----VPPVTCLVSD 125
Query: 123 FLWQFT-HVADEFKLPTIILQTHSVSGYLGIAAYPFLRDKGYVPIQDPQS------ESPV 175
FT A+EF+LP ++ + S L + + ++G +P +D E+ V
Sbjct: 126 CCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCLETKV 185
Query: 176 IEYPPL---RVKDIPK-LETRYP-EYNYPLVSAMVNNIKASSGMIWNTFEELEQAALSTL 230
P L R+KDI + T P + + + + + ++ NTF ELE ++ L
Sbjct: 186 DWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVINAL 245
Query: 231 PEEYSGIP-VFPIGPFHKYFP---------AXXXXXXXXXXXXXXWLDKQAPKSVIYVSF 280
S IP ++PIGP + WL+ + P SV+YV+F
Sbjct: 246 S---STIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNF 302
Query: 281 GSVAAINETEFLEIAWGLANSRVPFLWVVRPGLVDGVEWLEALPKGYLEMVDGRGYIVQW 340
GS + + LE AWGLAN + FLW++RP LV G + + + RG I W
Sbjct: 303 GSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVI--FSSEFTNEIADRGLIASW 360
Query: 341 APQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHL 400
PQ +VL HP++GGFLTH GWNST ESIC GVPM+C P ADQ + R++ + W +G+ +
Sbjct: 361 CPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEI 420
Query: 401 EGKLEKKEIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHIL 458
+ ++++E+ I ++ +G++M+++ LKK + R GG S+ L +++ +L
Sbjct: 421 DTNVKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNKVIKDVL 478
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 134/461 (29%), Positives = 201/461 (43%), Gaps = 36/461 (7%)
Query: 17 VILFPLPFQGHINPMLQLGS-ILYSKGFSITIIHTKFNSPNSCNYPHFDF--HSISD--- 70
V + P P GH+ P+++ +++ G ++T + P+ D SIS
Sbjct: 9 VAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLPSSISSVFL 68
Query: 71 ---GLTDPSAEDSTTILITLNAKCMVP-FRNCLAKLVSNTNNNNAQEDSVACLITD-FLW 125
LTD S+ I+L P R V A L+ D F
Sbjct: 69 PPVDLTDLSSSTRIESRISLTVTRSNPELRKVFDSFVEGGRLPTA-------LVVDLFGT 121
Query: 126 QFTHVADEFKLPTIILQTHSVSGYLGIAAYPFLRDKGYVPIQDPQSESPVIEYPPLRVKD 185
VA EF +P I + + P L + ++ + P+ KD
Sbjct: 122 DAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELTEPLMLPGCVPVAGKD 181
Query: 186 IPKLETRYPEYNYPLVSAMVNNIKASSGMIWNTFEELEQAALSTLPEE-YSGIPVFPIGP 244
+ Y + K + G++ NTF ELE A+ L E PV+P+GP
Sbjct: 182 FLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEPGLDKPPVYPVGP 241
Query: 245 FHKYFPAXXXXXXXXXXXXXXWLDKQAPKSVIYVSFGSVAAINETEFLEIAWGLANSRVP 304
WLD Q SV+YVSFGS + + E+A GLA+S
Sbjct: 242 LVNI--GKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQR 299
Query: 305 FLWVVR-PGLVDGVEWLEA---------LPKGYLEMVDGRGYIVQ-WAPQQQVLAHPAVG 353
FLWV+R P + + ++ LP G+LE RG+++ WAPQ QVLAHP+ G
Sbjct: 300 FLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTG 359
Query: 354 GFLTHSGWNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLH----LEGKLEKKEI 409
GFLTH GWNSTLES+ G+P+I P A+Q +NA +S R L +G + ++E+
Sbjct: 360 GFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEV 419
Query: 410 ETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQAL 450
++ LM EG+ +R ++ LK+ L+ G+S +AL
Sbjct: 420 ARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGTSTKAL 460
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 157 bits (398), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 127/470 (27%), Positives = 209/470 (44%), Gaps = 36/470 (7%)
Query: 6 ESRISPRNGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNSPNSCNY----- 60
++ ++ N V + PF H P+L L + ++ +T + N +
Sbjct: 5 KNEMNGNNLLHVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSNE 64
Query: 61 --PHFDFHSISDGLTD---PSAEDSTTILITLNAKCMVPFRNCLAKLVSNTNNNNAQEDS 115
P+ ++++ DGL S I + + A F++ + + V+ T N
Sbjct: 65 FLPNIKYYNVHDGLPKGYVSSGNPREPIFLFIKA-MQENFKHVIDEAVAETGKN------ 117
Query: 116 VACLITD-FLWQFTHVADEFKLPTIILQTHSVSGYLGIAAYPFLRDK-GYVPIQDPQSES 173
+ CL+TD F W +A+E + L T L +R+K G + D +S
Sbjct: 118 ITCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGSKEVHDVKSID 177
Query: 174 PVIEYPPLRVKDIPKLETRYPEYNYP---LVSAMVNNIKASSGMIWNTFEELEQAALSTL 230
+ +P L+ D+P E + + P ++ M + ++ + N+F + + L
Sbjct: 178 VLPGFPELKASDLP--EGVIKDIDVPFATMLHKMGLELPRANAVAINSFATIHPLIENEL 235
Query: 231 PEEYSGIPVFPIGPFHKYFPAXXXXXXXXXXXXXXWLDKQAPKSVIYVSFGSVAAINETE 290
++ + +GPF+ P WLD+ SV+Y+SFGSV E
Sbjct: 236 NSKFKLL--LNVGPFNLTTP---QRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHE 290
Query: 291 FLEIAWGLANSRVPFLWVVRPGLVDGVEWLEALPKGYLEMVDGRGYIVQWAPQQQVLAHP 350
+A L PF+W R + E LPKG+LE +G IV WAPQ ++L H
Sbjct: 291 LTALAESLEECGFPFIWSFRG------DPKEKLPKGFLERTKTKGKIVAWAPQVEILKHS 344
Query: 351 AVGGFLTHSGWNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLE-GKLEKKEI 409
+VG FLTHSGWNS LE I GVPMI +P DQ +N V +G+ ++ G L K+ I
Sbjct: 345 SVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTKESI 404
Query: 410 ETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHILS 459
+ A+ M +G MR++I LK++ + Q G+S L+ + S
Sbjct: 405 KKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLIQIVTS 454
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 155 bits (393), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 118/378 (31%), Positives = 190/378 (50%), Gaps = 40/378 (10%)
Query: 95 FRNCLAKLVSNTNNNNAQEDSVACLITD-FLWQFTHVADEFK---LPTIILQTHSVSGYL 150
FR + V+ T V+CL+ D F+W +A E LP +S+S ++
Sbjct: 98 FRQGMVMAVAETGR------PVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHV 151
Query: 151 GIAAYPFLRDK-GYVPIQDPQSESPVIEYPP----LRVKDIPKLETRYPEYNYPLVSAMV 205
I +R+K G IQ + E ++ + P +R +D+ + + N L S M+
Sbjct: 152 YIDE---IREKIGVSGIQGREDE--LLNFIPGMSKVRFRDLQE-GIVFGNLN-SLFSRML 204
Query: 206 NNI-----KASSGMIWNTFEELEQAALSTLPEEYSGIPVFPIGPFHKYFPAXXXXXXXXX 260
+ + KA++ I N+FEEL+ + + L + IGPF+ P
Sbjct: 205 HRMGQVLPKATAVFI-NSFEELDDSLTNDLKSKLK--TYLNIGPFNLITPPPVVPNTTGC 261
Query: 261 XXXXXWLDKQAPKSVIYVSFGSVAAINETEFLEIAWGLANSRVPFLWVVRPGLVDGVEWL 320
WL ++ P SV+Y+SFG+V E + ++ L SRVPF+W +R +
Sbjct: 262 LQ---WLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRD------KAR 312
Query: 321 EALPKGYLEMVDGRGYIVQWAPQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCL 380
LP+G+LE G G +V WAPQ +VLAH AVG F+TH GWNS ES+ GVP+IC+P
Sbjct: 313 VHLPEGFLEKTRGYGMVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFF 372
Query: 381 ADQMVNARYVSHVWRVGLHLEGKL-EKKEIETAIRRLMVEAEGQEMRERITCLKKNVDAC 439
DQ +N R V V +G+ +EG + K + + +++ + +G+++RE + L++ D
Sbjct: 373 GDQRLNGRMVEDVLEIGVRIEGGVFTKSGLMSCFDQILSQEKGKKLRENLRALRETADRA 432
Query: 440 LRQGGSSHQALGRLVDHI 457
+ GSS + LVD +
Sbjct: 433 VGPKGSSTENFITLVDLV 450
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 145 bits (367), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 133/475 (28%), Positives = 212/475 (44%), Gaps = 57/475 (12%)
Query: 16 RVILFPLPFQGHINPMLQLGSIL--YSKGFSITIIHTKF-NSPNSCNYPHFDFHSISD-G 71
+I P P GH+ L+ +L + K IT+ KF P + +Y S
Sbjct: 11 ELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQIQ 70
Query: 72 LTD-PSAEDSTTILITLNAKCMVPFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTHV 130
L D P E L+ ++ F L V T V ++ F V
Sbjct: 71 LIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTILSNKVVGLVLDFFCVSMIDV 130
Query: 131 ADEFKLPTIILQTHSVSGYLGIAAYPFLRDKGYVPIQDPQSESPVIEYPPLRVKDIPKLE 190
+EF +P+ + T +V G+L + L+++ + D ++ +IP +
Sbjct: 131 GNEFGIPSYLFLTSNV-GFLSLMLS--LKNRQIEEVFDDSDRDH-------QLLNIPGIS 180
Query: 191 TRYP-----------EYNYPLVSAMVNNIKASSGMIWNTFEELEQAALSTLPEEYSGIP- 238
+ P + Y + + + G+I NTF +LEQ+++ L + IP
Sbjct: 181 NQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPP 240
Query: 239 VFPIGPFHKYFPAXX-XXXXXXXXXXXXWLDKQAPKSVIYVSFGSVA-AINETEFLEIAW 296
++ +GP WLD+Q KSV+++ FGS+ + ++ EIA
Sbjct: 241 IYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIAL 300
Query: 297 GLANSRVPFLWVVRPGLVDGVEWLEALPKGYLEM--VDGRGYIVQWAPQQQVLAHPAVGG 354
GL +S V FLW + P+G+LE ++G+G I WAPQ +VLAH A+GG
Sbjct: 301 GLKHSGVRFLW-------SNSAEKKVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGG 353
Query: 355 FLTHSGWNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEK-------K 407
F++H GWNS LES+ GVP++ P A+Q +NA + W VGL L K +
Sbjct: 354 FVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAE 413
Query: 408 EIETAIRRLM-----VEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHI 457
EIE ++ LM V + QEM+E + +N + GGSS ++G+L+D I
Sbjct: 414 EIEKGLKDLMDKDSIVHKKVQEMKE----MSRN---AVVDGGSSLISVGKLIDDI 461
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 145 bits (366), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 133/475 (28%), Positives = 212/475 (44%), Gaps = 57/475 (12%)
Query: 16 RVILFPLPFQGHINPMLQLGSIL--YSKGFSITIIHTKF-NSPNSCNYPHFDFHSISD-G 71
+I P P GH+ L+ +L + K IT+ KF P + +Y S
Sbjct: 11 ELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQIQ 70
Query: 72 LTD-PSAEDSTTILITLNAKCMVPFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTHV 130
L D P E L+ ++ F L V T V ++ F V
Sbjct: 71 LIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTILSNKVVGLVLDFFCVSMIDV 130
Query: 131 ADEFKLPTIILQTHSVSGYLGIAAYPFLRDKGYVPIQDPQSESPVIEYPPLRVKDIPKLE 190
+EF +P+ + T +V G+L + L+++ + D ++ +IP +
Sbjct: 131 GNEFGIPSYLFLTSNV-GFLSLMLS--LKNRQIEEVFDDSDRDH-------QLLNIPGIS 180
Query: 191 TRYP-----------EYNYPLVSAMVNNIKASSGMIWNTFEELEQAALSTLPEEYSGIP- 238
+ P + Y + + + G+I NTF +LEQ+++ L + IP
Sbjct: 181 NQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPP 240
Query: 239 VFPIGPFHKYFPAXX-XXXXXXXXXXXXWLDKQAPKSVIYVSFGSVA-AINETEFLEIAW 296
++ +GP WLD+Q KSV+++ FGS+ + ++ EIA
Sbjct: 241 IYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIAL 300
Query: 297 GLANSRVPFLWVVRPGLVDGVEWLEALPKGYLEM--VDGRGYIVQWAPQQQVLAHPAVGG 354
GL +S V FLW + P+G+LE ++G+G I WAPQ +VLAH A+GG
Sbjct: 301 GLKHSGVRFLW-------SNSAEKKVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGG 353
Query: 355 FLTHSGWNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEK-------K 407
F++H GWNS LES+ GVP++ P A+Q +NA + W VGL L K +
Sbjct: 354 FVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAE 413
Query: 408 EIETAIRRLM-----VEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHI 457
EIE ++ LM V + QEM+E + +N + GGSS ++G+L+D I
Sbjct: 414 EIEKGLKDLMDKDSIVHKKVQEMKE----MSRN---AVVDGGSSLISVGKLIDDI 461
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 337 IVQWAPQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCLADQMVN 386
+ +W PQ +L HP F+TH G N E+I G+P + P ADQ N
Sbjct: 72 LYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN 121
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 11/129 (8%)
Query: 314 VDGVEWLEALPKGY------LEMVDGRGYIVQWAPQQQVLAHPAVGGFLTHSGWNSTLES 367
VDG++W L G L V + QW PQ +L F+TH+G ST+E+
Sbjct: 280 VDGLDWHVVLSVGRFVDPADLGEVPPNVEVHQWVPQLDILTK--ASAFITHAGMGSTMEA 337
Query: 368 ICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEKKEIETAIRRLMVEAEGQEMRE 427
+ VPM+ P +A+Q +NA + +GL ++ E ++ A + E
Sbjct: 338 LSNAVPMVAVPQIAEQTMNAE---RIVELGLGRHIPRDQVTAEKLREAVLAVASDPGVAE 394
Query: 428 RITCLKKNV 436
R+ +++ +
Sbjct: 395 RLAAVRQEI 403
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 339 QWAPQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCLADQMV-NARYVSHVWRVG 397
QW P VLAH LTH + LE+ GVP++ P A + +A V +
Sbjct: 287 QWIPFHSVLAH--ARACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGS 344
Query: 398 LHLEGKLEKKEIETAIRRLMVEA 420
+ +LE I A+ RL ++
Sbjct: 345 VLRPDQLEPASIREAVERLAADS 367
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 13/112 (11%)
Query: 340 WAPQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLH 399
W PQ +L + F+TH+G + E + PMI P DQ NA + GL
Sbjct: 290 WVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQ-----GLG 342
Query: 400 LEGKLEKKEIETAIRRLMVEA--EGQEMRERITCLKKNVDACLRQGGSSHQA 449
+ KL +E + R A + E+ R+ + + A + Q G + +A
Sbjct: 343 VARKLATEEATADLLRETALALVDDPEVARRL----RRIQAEMAQEGGTRRA 390
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 61/156 (39%), Gaps = 15/156 (9%)
Query: 266 WLD-KQAPKSVIYVSFGSVAAINETEFLEIAW-GLANSRVPFLWVVRPGLVDGVEWLEAL 323
WL + + ++Y++ G+ + E L A GLA L P L V L +
Sbjct: 234 WLSSRDTARPLVYLTLGTSSG-GTVEVLRAAIDGLAGLDADVLVASGPSL--DVSGLGEV 290
Query: 324 PKGYLEMVDGRGYIVQWAPQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCLADQ 383
P + W PQ +L H V + H G +TL ++ GVP + P D
Sbjct: 291 PANV--------RLESWVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFPWAGDS 340
Query: 384 MVNARYVSHVWRVGLHLEGKLEKKEIETAIRRLMVE 419
NA+ V+ L + + A +RL+ E
Sbjct: 341 FANAQAVAQAGAGDHLLPDNISPDSVSGAAKRLLAE 376
>pdb|4AN8|A Chain A, Structure Of Thermus Thermophilus Casa (Cse1)
pdb|4AN8|B Chain B, Structure Of Thermus Thermophilus Casa (Cse1)
Length = 506
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 169 PQSESPVIEYPPLRVKDIPKLETRYP 194
P+ ++P+ E PPLR+ D+ T++P
Sbjct: 212 PEDDAPIWEVPPLRLGDLEGARTKWP 237
>pdb|4FZR|A Chain A, Crystal Structure Of Ssfs6, Streptomyces Sp. Sf2575
Glycosyltransferase
Length = 398
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 13/94 (13%)
Query: 320 LEALPKGYLEMVDGRGYIVQWAPQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPC 379
L+ LP+G L G+ + P V+ H H G +TL + EGVP + P
Sbjct: 279 LQPLPEGVLAA--GQFPLSAIXPACDVVVH--------HGGHGTTLTCLSEGVPQVSVPV 328
Query: 380 LADQMVNARYVSHVWRVGLHLEGKLEKKEIETAI 413
+A+ +AR + G +E E+ +E+ +
Sbjct: 329 IAEVWDSARLLHA---AGAGVEVPWEQAGVESVL 359
>pdb|4F3E|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Casa
pdb|4F3E|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Casa
Length = 502
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 169 PQSESPVIEYPPLRVKDIPKLETRYP 194
P+ ++P+ E PPLR+ D+ T++P
Sbjct: 208 PEDDAPIWEVPPLRLGDLEGARTKWP 233
>pdb|4EJ3|A Chain A, Crystal Structure Of A Crispr Associated Protein From
Thermus Thermophilus Hb8
pdb|4EJ3|B Chain B, Crystal Structure Of A Crispr Associated Protein From
Thermus Thermophilus Hb8
Length = 514
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 169 PQSESPVIEYPPLRVKDIPKLETRYP 194
P+ ++P+ E PPLR+ D+ T++P
Sbjct: 220 PEDDAPIWEVPPLRLGDLEGARTKWP 245
>pdb|4G2T|A Chain A, Crystal Structure Of Streptomyces Sp. Sf2575
Glycosyltransferase Ssfs6, Complexed With Thymidine
Diphosphate
Length = 397
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 13/94 (13%)
Query: 320 LEALPKGYLEMVDGRGYIVQWAPQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPC 379
L+ LP+G L G+ + P V+ H H G +TL + EGVP + P
Sbjct: 278 LQPLPEGVLAA--GQFPLSAIXPACDVVVH--------HGGHGTTLTCLSEGVPQVSVPV 327
Query: 380 LADQMVNARYVSHVWRVGLHLEGKLEKKEIETAI 413
+A+ +AR + G +E E+ +E+ +
Sbjct: 328 IAEVWDSARLLH---AAGAGVEVPWEQAGVESVL 358
>pdb|4GWP|B Chain B, Structure Of The Mediator Head Module From S. Cerevisiae
pdb|4GWQ|B Chain B, Structure Of The Mediator Head Module From S. Cerevisiae
In Complex With The Carboxy-Terminal Domain (Ctd) Of Rna
Polymerase Ii Rpb1 Subunit
Length = 687
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNSPNSCNYPHFD 64
RR + LP H +P L L +L S + +IH KF++ N FD
Sbjct: 614 RRELKINLPLTEHKSPNLSL--MLESPNYCNALIHIKFSAGTEANAVSFD 661
>pdb|2ZPT|X Chain X, Crystal Structure Of Mouse Sulfotransferase Sult1d1
Complex With Pap
pdb|2ZVP|X Chain X, Crystal Structure Of Mouse Cytosolic Sulfotransferase
Msult1d1 Complex With Pap And P-Nitrophenol
pdb|2ZVQ|X Chain X, Crystal Structure Of Mouse Cytosolic Sulfotransferase
Msult1d1 Complex With Pap And Alpha-naphthol
pdb|2ZYT|X Chain X, Crystal Structure Of Mouse Cytosolic Sulfotransferase
Msult1d1 Complex With Paps
pdb|2ZYU|X Chain X, Crystal Structure Of Mouse Cytosolic Sulfotransferase
Msult1d1 Complex With Paps And P-Nitrophenyl Sulfate
pdb|2ZYV|X Chain X, Crystal Structure Of Mouse Cytosolic Sulfotransferase
Msult1d1 Complex With PapsPAP AND P-Nitrophenol
pdb|2ZYW|X Chain X, Crystal Structure Of Mouse Cytosolic Sulfotransferase
Msult1d1 Complex With Pap And P-Nitrophenol, Obtained By
Two-Step Soaking Method
Length = 295
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 301 SRVPFLWVVRPGLVDGVEWLEALP 324
RVPF+ ++ PG+ +GVE L +P
Sbjct: 77 KRVPFMELIIPGITNGVEMLNNMP 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,139,239
Number of Sequences: 62578
Number of extensions: 587982
Number of successful extensions: 1179
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1142
Number of HSP's gapped (non-prelim): 25
length of query: 460
length of database: 14,973,337
effective HSP length: 102
effective length of query: 358
effective length of database: 8,590,381
effective search space: 3075356398
effective search space used: 3075356398
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)