Query 012563
Match_columns 460
No_of_seqs 130 out of 1462
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 03:57:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012563.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012563hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02410 UDP-glucoronosyl/UDP- 100.0 2.9E-68 6.3E-73 524.1 45.9 439 13-460 6-451 (451)
2 PLN02555 limonoid glucosyltran 100.0 8.2E-65 1.8E-69 501.2 44.3 436 10-459 3-469 (480)
3 PLN02562 UDP-glycosyltransfera 100.0 1.8E-64 3.9E-69 498.8 42.5 427 13-458 5-448 (448)
4 PLN02173 UDP-glucosyl transfer 100.0 3.1E-64 6.7E-69 493.2 43.4 419 12-458 3-447 (449)
5 PLN02992 coniferyl-alcohol glu 100.0 6.6E-64 1.4E-68 493.4 42.7 430 13-459 4-469 (481)
6 PLN02210 UDP-glucosyl transfer 100.0 7.5E-64 1.6E-68 494.8 43.3 425 11-458 5-454 (456)
7 PLN02448 UDP-glycosyltransfera 100.0 1.8E-63 3.8E-68 495.5 42.1 430 8-459 4-457 (459)
8 PLN02207 UDP-glycosyltransfera 100.0 1.3E-62 2.8E-67 483.5 45.3 437 13-458 2-464 (468)
9 PLN02863 UDP-glucoronosyl/UDP- 100.0 7.2E-63 1.6E-67 489.2 43.0 440 10-460 5-472 (477)
10 PLN00164 glucosyltransferase; 100.0 1.1E-62 2.4E-67 489.5 44.5 435 13-459 2-473 (480)
11 PLN02670 transferase, transfer 100.0 7.5E-63 1.6E-67 485.6 40.8 431 11-460 3-466 (472)
12 PLN02152 indole-3-acetate beta 100.0 2.9E-62 6.3E-67 480.0 44.5 422 14-457 3-454 (455)
13 PLN02534 UDP-glycosyltransfera 100.0 2.9E-62 6.4E-67 483.7 42.1 438 11-459 5-486 (491)
14 PLN03015 UDP-glucosyl transfer 100.0 4.4E-62 9.5E-67 477.7 42.6 429 13-457 2-466 (470)
15 PLN03004 UDP-glycosyltransfera 100.0 2.7E-62 5.8E-67 479.7 40.2 423 13-448 2-450 (451)
16 PLN03007 UDP-glucosyltransfera 100.0 5.6E-62 1.2E-66 487.1 43.1 434 12-460 3-481 (482)
17 PLN02554 UDP-glycosyltransfera 100.0 4.8E-62 1E-66 486.9 42.5 430 14-459 2-478 (481)
18 PLN02764 glycosyltransferase f 100.0 1.9E-61 4.2E-66 471.8 41.4 415 13-459 4-445 (453)
19 PLN02208 glycosyltransferase f 100.0 2.6E-61 5.6E-66 473.6 41.0 415 13-460 3-440 (442)
20 PLN02167 UDP-glycosyltransfera 100.0 8.2E-61 1.8E-65 477.3 43.3 438 13-459 2-472 (475)
21 PLN00414 glycosyltransferase f 100.0 2.6E-60 5.7E-65 467.0 40.8 414 13-459 3-440 (446)
22 PHA03392 egt ecdysteroid UDP-g 100.0 1.1E-49 2.3E-54 399.1 27.4 388 15-438 21-448 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 1.5E-52 3.2E-57 427.0 -6.8 396 16-458 2-439 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 1.6E-42 3.5E-47 342.4 29.9 370 20-457 1-390 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 2.7E-43 6E-48 349.4 24.5 358 15-437 1-386 (401)
26 COG1819 Glycosyl transferases, 100.0 2.3E-41 5E-46 330.2 20.6 385 14-455 1-397 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 1.7E-40 3.6E-45 338.5 21.0 390 14-438 5-438 (496)
28 PRK12446 undecaprenyldiphospho 100.0 4.9E-28 1.1E-32 233.6 28.6 333 16-459 3-351 (352)
29 COG0707 MurG UDP-N-acetylgluco 99.9 5.7E-25 1.2E-29 209.6 27.1 306 15-419 1-324 (357)
30 PF13528 Glyco_trans_1_3: Glyc 99.9 1.5E-25 3.4E-30 215.2 23.2 302 15-416 1-317 (318)
31 TIGR00661 MJ1255 conserved hyp 99.9 5.5E-22 1.2E-26 190.2 23.3 123 272-419 187-314 (321)
32 PRK00726 murG undecaprenyldiph 99.9 3.7E-19 7.9E-24 173.8 31.0 343 15-459 2-357 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 1.7E-17 3.6E-22 161.7 28.4 312 16-419 1-324 (350)
34 COG4671 Predicted glycosyl tra 99.8 6.3E-17 1.4E-21 147.1 23.6 334 12-418 7-364 (400)
35 TIGR01133 murG undecaprenyldip 99.8 1.6E-16 3.6E-21 154.6 27.0 305 15-419 1-321 (348)
36 TIGR00215 lpxB lipid-A-disacch 99.8 2.1E-17 4.5E-22 162.0 18.6 352 15-455 6-384 (385)
37 PRK13609 diacylglycerol glucos 99.7 1.4E-16 3.1E-21 156.9 20.8 164 271-457 200-369 (380)
38 TIGR03590 PseG pseudaminic aci 99.7 7.2E-16 1.6E-20 144.2 17.9 104 273-389 170-278 (279)
39 PRK00025 lpxB lipid-A-disaccha 99.7 9.6E-15 2.1E-19 143.9 22.1 346 14-457 1-375 (380)
40 PRK13608 diacylglycerol glucos 99.6 5.1E-14 1.1E-18 138.8 22.6 165 271-458 200-370 (391)
41 TIGR03492 conserved hypothetic 99.6 9.7E-13 2.1E-17 129.2 27.4 357 22-455 4-394 (396)
42 PF04101 Glyco_tran_28_C: Glyc 99.6 7.1E-17 1.5E-21 139.7 -2.8 135 275-419 1-144 (167)
43 PLN02605 monogalactosyldiacylg 99.5 2.6E-12 5.6E-17 126.5 23.3 139 267-419 200-347 (382)
44 cd03814 GT1_like_2 This family 99.5 1.2E-10 2.6E-15 113.3 31.6 112 331-457 245-363 (364)
45 PLN02871 UDP-sulfoquinovose:DA 99.4 7.7E-10 1.7E-14 111.9 33.7 137 275-431 264-413 (465)
46 COG3980 spsG Spore coat polysa 99.4 4.5E-11 9.8E-16 106.1 17.8 146 273-435 158-306 (318)
47 cd03823 GT1_ExpE7_like This fa 99.3 4.1E-09 8.9E-14 102.2 31.9 130 272-419 189-329 (359)
48 cd04962 GT1_like_5 This family 99.3 2E-09 4.3E-14 105.6 29.8 113 333-460 253-371 (371)
49 PRK10307 putative glycosyl tra 99.3 6.6E-09 1.4E-13 103.6 33.3 167 273-459 228-407 (412)
50 cd03794 GT1_wbuB_like This fam 99.3 4.1E-09 8.9E-14 103.2 30.0 334 16-420 1-366 (394)
51 cd03800 GT1_Sucrose_synthase T 99.3 5E-09 1.1E-13 103.7 30.5 328 25-419 21-368 (398)
52 cd03818 GT1_ExpC_like This fam 99.3 1.2E-08 2.5E-13 101.2 32.7 79 333-419 281-366 (396)
53 cd03816 GT1_ALG1_like This fam 99.3 4.9E-09 1.1E-13 104.4 29.8 346 13-433 2-399 (415)
54 cd03817 GT1_UGDG_like This fam 99.3 6E-09 1.3E-13 101.5 29.6 94 332-434 258-359 (374)
55 cd03808 GT1_cap1E_like This fa 99.2 5.9E-08 1.3E-12 93.8 33.3 314 16-420 1-330 (359)
56 cd03801 GT1_YqgM_like This fam 99.2 3.4E-08 7.3E-13 95.7 30.4 113 331-457 254-373 (374)
57 PF03033 Glyco_transf_28: Glyc 99.2 4.7E-12 1E-16 105.9 2.3 130 17-148 1-134 (139)
58 cd03825 GT1_wcfI_like This fam 99.2 4.2E-08 9.1E-13 95.8 30.2 115 332-460 243-365 (365)
59 TIGR03449 mycothiol_MshA UDP-N 99.2 2.6E-07 5.7E-12 91.8 34.4 110 333-458 283-400 (405)
60 cd03820 GT1_amsD_like This fam 99.1 2E-07 4.4E-12 89.5 30.1 80 333-420 235-320 (348)
61 cd03786 GT1_UDP-GlcNAc_2-Epime 99.1 4.7E-09 1E-13 102.8 18.5 134 272-419 197-337 (363)
62 cd03798 GT1_wlbH_like This fam 99.1 4.9E-07 1.1E-11 87.8 32.4 113 332-460 258-377 (377)
63 PF04007 DUF354: Protein of un 99.1 4.2E-08 9.1E-13 93.1 22.6 300 15-418 1-309 (335)
64 cd03795 GT1_like_4 This family 99.1 1.5E-07 3.3E-12 91.5 27.3 146 273-432 190-346 (357)
65 cd03796 GT1_PIG-A_like This fa 99.1 2.7E-07 5.8E-12 91.6 28.8 112 332-459 249-367 (398)
66 cd03821 GT1_Bme6_like This fam 99.0 4.9E-07 1.1E-11 88.0 29.5 78 332-419 261-345 (375)
67 TIGR02472 sucr_P_syn_N sucrose 99.0 5.9E-07 1.3E-11 90.2 30.5 112 332-457 316-438 (439)
68 cd05844 GT1_like_7 Glycosyltra 99.0 3.6E-07 7.9E-12 89.4 28.4 80 332-419 244-336 (367)
69 PRK14089 ipid-A-disaccharide s 99.0 4.5E-08 9.7E-13 93.6 20.5 181 235-454 142-345 (347)
70 cd03819 GT1_WavL_like This fam 99.0 4.2E-07 9.2E-12 88.4 27.7 95 332-434 245-347 (355)
71 TIGR02468 sucrsPsyn_pln sucros 99.0 2E-06 4.3E-11 92.0 33.2 398 12-458 167-669 (1050)
72 PRK05749 3-deoxy-D-manno-octul 99.0 4.9E-07 1.1E-11 90.5 27.8 78 336-419 305-388 (425)
73 cd03805 GT1_ALG2_like This fam 99.0 5.8E-07 1.3E-11 88.9 28.1 91 332-431 279-377 (392)
74 TIGR00236 wecB UDP-N-acetylglu 99.0 3.2E-08 6.9E-13 96.9 17.6 135 273-429 197-341 (365)
75 cd03822 GT1_ecORF704_like This 98.9 1.7E-06 3.6E-11 84.3 29.2 109 332-457 246-365 (366)
76 cd04955 GT1_like_6 This family 98.9 2.2E-06 4.8E-11 83.5 28.9 155 277-457 196-362 (363)
77 cd04951 GT1_WbdM_like This fam 98.9 3.7E-06 7.9E-11 81.8 29.3 110 333-458 245-359 (360)
78 cd03802 GT1_AviGT4_like This f 98.9 7.4E-07 1.6E-11 85.9 23.2 152 276-457 173-334 (335)
79 cd03799 GT1_amsK_like This is 98.8 6.7E-06 1.4E-10 79.8 28.5 81 332-420 235-328 (355)
80 cd03807 GT1_WbnK_like This fam 98.8 1.3E-05 2.8E-10 77.6 30.3 109 333-457 251-364 (365)
81 TIGR02149 glgA_Coryne glycogen 98.8 5.4E-06 1.2E-10 81.8 27.7 164 274-459 201-386 (388)
82 cd03811 GT1_WabH_like This fam 98.8 4.2E-06 9E-11 80.5 25.9 79 333-419 246-332 (353)
83 PRK09922 UDP-D-galactose:(gluc 98.8 2.1E-06 4.5E-11 83.9 23.2 148 274-433 180-341 (359)
84 TIGR03088 stp2 sugar transfera 98.7 1.1E-05 2.3E-10 79.3 27.4 113 333-459 255-372 (374)
85 PLN02275 transferase, transfer 98.7 1.8E-05 3.8E-10 77.8 28.5 75 333-417 286-371 (371)
86 PRK15427 colanic acid biosynth 98.7 3.7E-05 8E-10 76.3 30.1 115 332-460 278-406 (406)
87 PLN02846 digalactosyldiacylgly 98.7 5.6E-06 1.2E-10 82.1 23.8 71 338-419 289-363 (462)
88 PRK01021 lpxB lipid-A-disaccha 98.7 1.4E-05 3E-10 80.6 26.0 184 235-436 379-589 (608)
89 cd03792 GT1_Trehalose_phosphor 98.7 2.3E-05 5E-10 77.0 26.9 113 332-460 251-372 (372)
90 TIGR03568 NeuC_NnaA UDP-N-acet 98.7 1.8E-06 3.9E-11 84.2 18.7 130 272-418 200-338 (365)
91 PF02684 LpxB: Lipid-A-disacch 98.6 1.7E-05 3.6E-10 76.6 23.9 196 235-449 151-367 (373)
92 TIGR03087 stp1 sugar transfera 98.6 3.7E-05 8.1E-10 76.2 26.7 110 333-458 280-395 (397)
93 PLN00142 sucrose synthase 98.6 5.5E-05 1.2E-09 79.4 28.5 77 333-417 642-730 (815)
94 TIGR02470 sucr_synth sucrose s 98.6 0.00026 5.6E-09 74.4 32.1 79 333-417 619-707 (784)
95 COG1519 KdtA 3-deoxy-D-manno-o 98.5 7.6E-05 1.6E-09 71.4 24.3 329 17-459 51-417 (419)
96 TIGR02095 glgA glycogen/starch 98.5 0.00011 2.4E-09 74.7 27.5 167 274-460 291-473 (473)
97 cd03812 GT1_CapH_like This fam 98.5 0.00012 2.6E-09 71.1 26.3 80 332-420 248-332 (358)
98 COG0763 LpxB Lipid A disacchar 98.5 7E-05 1.5E-09 70.9 22.5 202 235-458 154-380 (381)
99 PRK15179 Vi polysaccharide bio 98.5 0.00027 5.8E-09 74.1 29.1 113 332-458 573-692 (694)
100 cd03809 GT1_mtfB_like This fam 98.5 0.0001 2.2E-09 71.6 24.8 79 331-419 251-336 (365)
101 PRK00654 glgA glycogen synthas 98.4 0.00012 2.7E-09 74.0 25.3 169 274-459 282-462 (466)
102 cd03806 GT1_ALG11_like This fa 98.4 0.00015 3.3E-09 72.3 25.1 80 332-420 304-393 (419)
103 PLN02316 synthase/transferase 98.4 0.0011 2.3E-08 71.7 31.6 118 332-458 899-1032(1036)
104 KOG3349 Predicted glycosyltran 98.4 1.8E-06 4E-11 69.5 8.2 118 273-400 3-132 (170)
105 cd03804 GT1_wbaZ_like This fam 98.3 7.6E-05 1.6E-09 72.6 19.7 124 277-420 198-327 (351)
106 PLN02949 transferase, transfer 98.3 0.0005 1.1E-08 69.2 25.7 112 332-459 334-456 (463)
107 cd03791 GT1_Glycogen_synthase_ 98.2 0.0015 3.3E-08 66.4 27.5 169 273-458 295-475 (476)
108 cd04950 GT1_like_1 Glycosyltra 98.1 0.0082 1.8E-07 59.0 29.4 109 332-459 253-371 (373)
109 PF02350 Epimerase_2: UDP-N-ac 98.1 0.00021 4.5E-09 69.1 16.6 141 271-430 178-326 (346)
110 TIGR02918 accessory Sec system 98.0 0.001 2.2E-08 67.6 21.9 114 332-459 375-499 (500)
111 PRK10125 putative glycosyl tra 98.0 0.0097 2.1E-07 59.0 28.2 152 278-460 245-405 (405)
112 PRK15484 lipopolysaccharide 1, 98.0 0.00026 5.7E-09 69.7 16.7 115 331-459 255-377 (380)
113 PF13844 Glyco_transf_41: Glyc 98.0 0.00013 2.9E-09 71.9 14.2 136 271-419 282-430 (468)
114 cd03813 GT1_like_3 This family 98.0 0.0034 7.4E-08 63.8 24.4 112 332-456 353-473 (475)
115 cd04946 GT1_AmsK_like This fam 97.9 0.0003 6.5E-09 70.0 15.7 111 333-454 289-406 (407)
116 COG0381 WecB UDP-N-acetylgluco 97.9 0.00052 1.1E-08 65.2 16.0 141 271-432 202-351 (383)
117 cd04949 GT1_gtfA_like This fam 97.9 0.0016 3.5E-08 63.8 19.7 100 332-436 260-363 (372)
118 PF00534 Glycos_transf_1: Glyc 97.8 0.00052 1.1E-08 59.2 12.6 80 332-419 72-158 (172)
119 COG5017 Uncharacterized conser 97.8 0.00023 5E-09 56.5 9.0 124 276-418 2-141 (161)
120 PLN02501 digalactosyldiacylgly 97.7 0.022 4.8E-07 58.8 23.9 74 335-419 603-681 (794)
121 COG1817 Uncharacterized protei 97.7 0.017 3.6E-07 53.2 20.6 105 22-145 7-114 (346)
122 PRK10017 colanic acid biosynth 97.6 0.083 1.8E-06 52.5 30.1 176 264-457 225-422 (426)
123 PRK09814 beta-1,6-galactofuran 97.4 0.0011 2.3E-08 64.1 10.8 111 332-456 206-332 (333)
124 cd01635 Glycosyltransferase_GT 97.3 0.043 9.2E-07 49.0 19.3 48 332-381 160-215 (229)
125 PF13692 Glyco_trans_1_4: Glyc 97.3 0.0012 2.6E-08 54.3 8.0 80 332-419 52-135 (135)
126 TIGR02193 heptsyl_trn_I lipopo 97.3 0.013 2.7E-07 56.2 16.0 134 272-417 178-319 (319)
127 COG3914 Spy Predicted O-linked 97.2 0.0087 1.9E-07 59.5 13.4 132 271-413 427-572 (620)
128 PRK15490 Vi polysaccharide bio 97.1 0.018 3.9E-07 58.3 15.2 114 332-459 454-575 (578)
129 PF06722 DUF1205: Protein of u 96.9 0.0011 2.4E-08 50.8 3.8 62 263-327 30-96 (97)
130 PF13477 Glyco_trans_4_2: Glyc 96.9 0.012 2.7E-07 48.5 10.2 103 16-144 1-108 (139)
131 PRK10422 lipopolysaccharide co 96.6 0.24 5.2E-06 48.2 19.0 106 13-140 4-113 (352)
132 PRK14098 glycogen synthase; Pr 96.6 0.027 5.8E-07 57.4 12.6 115 330-459 359-485 (489)
133 PRK10916 ADP-heptose:LPS hepto 96.6 0.29 6.3E-06 47.5 19.5 102 15-140 1-106 (348)
134 PHA01633 putative glycosyl tra 96.5 0.043 9.3E-07 52.6 12.1 101 332-436 200-324 (335)
135 KOG4626 O-linked N-acetylgluco 96.4 0.034 7.3E-07 55.8 11.3 151 271-439 756-918 (966)
136 TIGR02201 heptsyl_trn_III lipo 96.3 0.15 3.3E-06 49.4 15.4 104 16-140 1-108 (344)
137 COG0859 RfaF ADP-heptose:LPS h 96.3 0.27 5.8E-06 47.4 16.9 105 14-141 1-108 (334)
138 TIGR02195 heptsyl_trn_II lipop 96.2 0.36 7.9E-06 46.5 17.2 101 16-140 1-105 (334)
139 PHA01630 putative group 1 glyc 96.2 0.17 3.8E-06 48.6 14.5 112 340-459 197-330 (331)
140 PF13524 Glyco_trans_1_2: Glyc 96.2 0.047 1E-06 41.5 8.7 83 358-455 9-92 (92)
141 PRK10964 ADP-heptose:LPS hepto 96.0 0.27 6E-06 47.1 15.4 135 273-418 178-321 (322)
142 cd03789 GT1_LPS_heptosyltransf 95.5 0.69 1.5E-05 43.2 15.6 101 16-140 1-105 (279)
143 PF06258 Mito_fiss_Elm1: Mitoc 95.2 0.89 1.9E-05 43.2 15.0 58 342-402 221-282 (311)
144 TIGR02400 trehalose_OtsA alpha 95.0 1.6 3.4E-05 44.1 17.0 104 339-459 342-456 (456)
145 PF13579 Glyco_trans_4_4: Glyc 94.9 0.037 8E-07 46.4 4.3 95 30-143 6-104 (160)
146 PLN02939 transferase, transfer 94.9 0.4 8.6E-06 51.8 12.6 113 333-458 837-965 (977)
147 PF12000 Glyco_trans_4_3: Gkyc 94.5 0.47 1E-05 40.6 10.1 93 40-143 1-96 (171)
148 PF13439 Glyco_transf_4: Glyco 93.3 0.98 2.1E-05 38.2 10.3 31 24-54 11-41 (177)
149 PRK14099 glycogen synthase; Pr 93.1 2 4.2E-05 43.8 13.4 115 332-458 349-477 (485)
150 COG4370 Uncharacterized protei 92.8 0.44 9.5E-06 43.9 7.2 85 339-430 301-387 (412)
151 KOG2941 Beta-1,4-mannosyltrans 91.7 13 0.00027 35.5 29.0 60 11-70 9-70 (444)
152 cd03788 GT1_TPS Trehalose-6-Ph 91.6 4.4 9.5E-05 41.0 13.8 103 338-457 346-459 (460)
153 PF08660 Alg14: Oligosaccharid 91.2 0.48 1E-05 40.6 5.5 108 22-144 5-130 (170)
154 COG0438 RfaG Glycosyltransfera 90.6 15 0.00032 34.3 16.8 79 333-419 257-342 (381)
155 PRK13932 stationary phase surv 88.2 10 0.00022 34.8 11.8 40 12-54 3-43 (257)
156 PRK02261 methylaspartate mutas 87.2 1.3 2.9E-05 36.4 5.1 57 13-69 2-61 (137)
157 PLN03063 alpha,alpha-trehalose 87.0 15 0.00033 40.0 14.2 99 344-458 370-476 (797)
158 TIGR03713 acc_sec_asp1 accesso 86.8 2.2 4.8E-05 43.7 7.5 92 333-437 409-507 (519)
159 COG3660 Predicted nucleoside-d 86.5 22 0.00048 32.5 12.5 36 339-376 234-270 (329)
160 PF07429 Glyco_transf_56: 4-al 86.4 13 0.00029 35.4 11.7 81 333-418 245-332 (360)
161 PRK02797 4-alpha-L-fucosyltran 84.2 21 0.00047 33.5 11.8 135 276-417 147-292 (322)
162 COG1618 Predicted nucleotide k 83.8 3.4 7.3E-05 34.8 5.8 57 12-69 3-59 (179)
163 PRK14501 putative bifunctional 83.0 20 0.00043 38.7 13.0 109 337-458 346-461 (726)
164 COG0496 SurE Predicted acid ph 82.8 17 0.00036 33.2 10.3 39 15-56 1-40 (252)
165 cd03793 GT1_Glycogen_synthase_ 82.5 4.4 9.5E-05 41.6 7.3 75 342-419 467-552 (590)
166 COG1703 ArgK Putative periplas 82.2 15 0.00033 34.3 9.9 43 14-56 51-93 (323)
167 TIGR00715 precor6x_red precorr 82.0 8.8 0.00019 35.3 8.6 33 15-52 1-33 (256)
168 TIGR02919 accessory Sec system 81.8 23 0.0005 35.5 12.0 132 272-431 282-421 (438)
169 PF12146 Hydrolase_4: Putative 81.3 3.9 8.4E-05 30.0 4.9 36 14-49 15-50 (79)
170 TIGR00087 surE 5'/3'-nucleotid 81.2 27 0.00059 31.9 11.3 37 15-54 1-38 (244)
171 cd02067 B12-binding B12 bindin 81.1 2.4 5.3E-05 33.7 4.1 36 16-51 1-36 (119)
172 PF02441 Flavoprotein: Flavopr 81.0 3 6.4E-05 33.9 4.6 36 15-51 1-36 (129)
173 PF05159 Capsule_synth: Capsul 80.2 12 0.00026 34.7 9.0 41 336-379 186-226 (269)
174 PF02951 GSH-S_N: Prokaryotic 79.9 3.1 6.8E-05 33.2 4.2 37 15-51 1-40 (119)
175 PRK00346 surE 5'(3')-nucleotid 79.0 40 0.00086 30.9 11.6 38 15-54 1-38 (250)
176 PRK13934 stationary phase surv 78.5 44 0.00095 30.9 11.7 38 15-54 1-38 (266)
177 PF04127 DFP: DNA / pantothena 77.2 3.8 8.2E-05 35.7 4.3 53 14-69 3-67 (185)
178 PRK13935 stationary phase surv 76.7 52 0.0011 30.2 11.6 38 15-54 1-38 (253)
179 PF01975 SurE: Survival protei 75.7 5.8 0.00013 34.8 5.1 41 15-56 1-41 (196)
180 PF04464 Glyphos_transf: CDP-G 74.4 2.9 6.3E-05 40.9 3.3 110 333-454 252-368 (369)
181 COG2910 Putative NADH-flavin r 73.7 4.2 9E-05 35.0 3.5 33 15-51 1-33 (211)
182 COG2185 Sbm Methylmalonyl-CoA 72.3 6.4 0.00014 32.3 4.2 39 12-50 10-48 (143)
183 PF01075 Glyco_transf_9: Glyco 71.5 2.6 5.6E-05 38.5 2.0 99 271-377 103-208 (247)
184 cd01425 RPS2 Ribosomal protein 71.1 6.2 0.00013 34.6 4.2 113 26-147 40-162 (193)
185 PRK08305 spoVFB dipicolinate s 69.4 6.4 0.00014 34.5 3.8 39 13-51 4-42 (196)
186 PF00731 AIRC: AIR carboxylase 67.5 73 0.0016 26.6 10.2 137 275-438 2-148 (150)
187 COG0541 Ffh Signal recognition 67.5 23 0.00051 34.9 7.5 46 11-56 97-142 (451)
188 PF02310 B12-binding: B12 bind 66.9 12 0.00026 29.6 4.9 36 15-50 1-36 (121)
189 PRK05986 cob(I)alamin adenolsy 66.3 87 0.0019 27.4 10.2 59 13-71 21-85 (191)
190 COG2109 BtuR ATP:corrinoid ade 66.3 81 0.0017 27.5 9.6 109 4-126 16-133 (198)
191 cd02070 corrinoid_protein_B12- 66.0 12 0.00026 33.0 5.0 57 13-69 81-140 (201)
192 TIGR02370 pyl_corrinoid methyl 65.8 13 0.00028 32.7 5.1 106 12-140 82-191 (197)
193 PRK10867 signal recognition pa 65.6 30 0.00066 34.5 8.2 42 14-55 100-142 (433)
194 TIGR02015 BchY chlorophyllide 65.0 67 0.0015 32.1 10.6 93 16-142 287-380 (422)
195 TIGR02398 gluc_glyc_Psyn gluco 64.9 1.7E+02 0.0037 29.9 16.2 106 336-458 365-481 (487)
196 COG2894 MinD Septum formation 64.6 18 0.0004 32.2 5.6 41 16-56 3-45 (272)
197 PRK09620 hypothetical protein; 64.2 25 0.00053 31.8 6.7 39 13-51 2-52 (229)
198 cd02071 MM_CoA_mut_B12_BD meth 64.0 12 0.00027 29.9 4.3 36 16-51 1-36 (122)
199 PRK14099 glycogen synthase; Pr 63.8 11 0.00024 38.4 4.9 39 13-51 2-46 (485)
200 PRK08506 replicative DNA helic 63.8 16 0.00034 37.2 6.0 40 15-54 193-232 (472)
201 TIGR01425 SRP54_euk signal rec 62.5 37 0.00081 33.8 8.1 41 14-54 100-140 (429)
202 PRK06732 phosphopantothenate-- 62.4 12 0.00025 33.9 4.3 21 31-51 29-49 (229)
203 PRK06718 precorrin-2 dehydroge 62.2 43 0.00093 29.6 7.8 142 271-438 9-164 (202)
204 PRK13982 bifunctional SbtC-lik 61.9 22 0.00048 35.9 6.5 53 13-68 255-319 (475)
205 COG0003 ArsA Predicted ATPase 61.4 1E+02 0.0023 29.4 10.6 40 15-54 2-42 (322)
206 PRK04885 ppnK inorganic polyph 61.2 12 0.00027 34.5 4.3 28 350-379 36-69 (265)
207 COG4394 Uncharacterized protei 60.6 86 0.0019 29.2 9.2 38 336-376 241-281 (370)
208 TIGR03029 EpsG chain length de 60.4 1.3E+02 0.0028 27.8 11.2 39 13-51 101-141 (274)
209 PRK05595 replicative DNA helic 60.2 14 0.00031 37.1 4.9 40 15-54 202-242 (444)
210 COG1663 LpxK Tetraacyldisaccha 60.0 33 0.00072 32.7 6.9 40 15-54 50-89 (336)
211 TIGR03600 phage_DnaB phage rep 59.8 23 0.0005 35.4 6.3 40 15-54 195-235 (421)
212 PRK06321 replicative DNA helic 59.4 23 0.00049 35.9 6.2 39 16-54 228-267 (472)
213 cd01965 Nitrogenase_MoFe_beta_ 59.2 24 0.00053 35.3 6.4 34 13-51 298-331 (428)
214 PRK14098 glycogen synthase; Pr 58.6 14 0.00031 37.6 4.7 38 15-52 6-49 (489)
215 PRK06249 2-dehydropantoate 2-r 58.3 13 0.00028 35.4 4.1 35 12-51 3-37 (313)
216 PF01210 NAD_Gly3P_dh_N: NAD-d 58.2 7.4 0.00016 32.8 2.2 31 16-51 1-31 (157)
217 PRK12446 undecaprenyldiphospho 58.2 43 0.00093 32.5 7.8 95 274-376 3-119 (352)
218 cd00561 CobA_CobO_BtuR ATP:cor 58.0 1.2E+02 0.0025 25.7 10.7 57 15-71 3-65 (159)
219 cd02069 methionine_synthase_B1 57.0 22 0.00048 31.7 5.1 42 13-54 87-128 (213)
220 cd01974 Nitrogenase_MoFe_beta 57.0 61 0.0013 32.5 8.8 33 14-51 303-335 (435)
221 PRK02155 ppnK NAD(+)/NADH kina 56.8 20 0.00044 33.7 5.0 54 348-419 62-119 (291)
222 COG2861 Uncharacterized protei 56.7 30 0.00065 31.1 5.6 26 115-140 149-178 (250)
223 PRK13931 stationary phase surv 56.2 1.3E+02 0.0028 27.8 10.0 38 15-54 1-42 (261)
224 PF04413 Glycos_transf_N: 3-De 56.1 9.5 0.00021 33.2 2.5 92 21-143 27-126 (186)
225 cd03115 SRP The signal recogni 55.7 87 0.0019 26.5 8.6 37 17-53 3-39 (173)
226 cd01980 Chlide_reductase_Y Chl 55.7 39 0.00084 33.7 7.1 31 16-51 282-312 (416)
227 TIGR01285 nifN nitrogenase mol 55.1 46 0.001 33.3 7.6 86 14-141 311-397 (432)
228 TIGR02852 spore_dpaB dipicolin 54.8 15 0.00033 31.9 3.5 37 15-51 1-37 (187)
229 PRK08006 replicative DNA helic 54.7 41 0.0009 34.1 7.1 40 15-54 225-265 (471)
230 PRK14077 pnk inorganic polypho 54.5 21 0.00045 33.5 4.6 55 347-419 62-120 (287)
231 PLN02939 transferase, transfer 54.1 24 0.00051 38.8 5.5 41 12-52 479-525 (977)
232 PRK06849 hypothetical protein; 54.0 24 0.00053 34.7 5.4 35 13-51 3-37 (389)
233 PRK01911 ppnK inorganic polyph 53.1 23 0.00049 33.4 4.7 55 347-419 62-120 (292)
234 KOG0853 Glycosyltransferase [C 52.6 9.6 0.00021 38.3 2.2 59 363-429 381-440 (495)
235 KOG3339 Predicted glycosyltran 52.0 82 0.0018 27.2 7.2 27 14-41 38-64 (211)
236 PRK07313 phosphopantothenoylcy 52.0 18 0.00038 31.4 3.5 38 15-53 2-39 (182)
237 PRK06904 replicative DNA helic 51.8 38 0.00082 34.4 6.3 40 15-54 222-262 (472)
238 PRK02649 ppnK inorganic polyph 50.7 25 0.00055 33.3 4.6 54 348-419 67-124 (305)
239 COG1484 DnaC DNA replication p 50.7 24 0.00052 32.5 4.4 39 13-51 104-142 (254)
240 TIGR01501 MthylAspMutase methy 50.3 33 0.00072 28.0 4.6 56 14-69 1-59 (134)
241 PRK13604 luxD acyl transferase 49.7 34 0.00074 32.4 5.3 38 12-49 34-71 (307)
242 PRK04539 ppnK inorganic polyph 49.7 25 0.00054 33.2 4.4 54 348-419 67-124 (296)
243 PF02374 ArsA_ATPase: Anion-tr 49.4 24 0.00052 33.5 4.3 40 15-54 1-41 (305)
244 PRK03378 ppnK inorganic polyph 49.1 27 0.00058 32.9 4.5 55 347-419 61-119 (292)
245 PF02606 LpxK: Tetraacyldisacc 49.0 94 0.002 29.8 8.2 39 16-54 39-77 (326)
246 COG0801 FolK 7,8-dihydro-6-hyd 48.9 38 0.00081 28.6 4.8 30 274-303 2-31 (160)
247 PLN02470 acetolactate synthase 48.8 80 0.0017 33.1 8.5 93 279-379 2-110 (585)
248 PF09314 DUF1972: Domain of un 48.8 35 0.00075 29.7 4.8 39 31-69 23-62 (185)
249 COG3195 Uncharacterized protei 48.5 78 0.0017 26.7 6.4 75 361-437 87-164 (176)
250 PF06506 PrpR_N: Propionate ca 48.5 21 0.00046 30.6 3.5 71 348-419 31-124 (176)
251 PRK05920 aromatic acid decarbo 48.4 25 0.00054 31.1 3.9 38 14-52 3-40 (204)
252 PRK06179 short chain dehydroge 48.3 85 0.0018 28.7 7.8 33 16-51 5-37 (270)
253 COG0297 GlgA Glycogen synthase 48.3 3.2E+02 0.0069 27.9 13.9 153 289-458 310-476 (487)
254 PF08323 Glyco_transf_5: Starc 48.0 24 0.00051 32.3 3.9 24 28-51 19-42 (245)
255 PF02826 2-Hacid_dh_C: D-isome 47.7 50 0.0011 28.4 5.7 103 271-414 35-142 (178)
256 TIGR00708 cobA cob(I)alamin ad 47.5 1.2E+02 0.0026 26.0 7.8 58 14-72 5-68 (173)
257 PRK05647 purN phosphoribosylgl 47.1 62 0.0013 28.5 6.3 52 15-69 2-58 (200)
258 PRK08840 replicative DNA helic 47.0 62 0.0014 32.8 7.0 40 15-54 218-258 (464)
259 cd07039 TPP_PYR_POX Pyrimidine 46.8 1.5E+02 0.0033 25.0 8.5 27 353-379 65-97 (164)
260 PRK11519 tyrosine kinase; Prov 46.7 3.9E+02 0.0085 28.9 13.4 39 14-52 525-565 (719)
261 PRK06522 2-dehydropantoate 2-r 46.5 23 0.00049 33.4 3.7 31 15-50 1-31 (304)
262 PRK12311 rpsB 30S ribosomal pr 46.2 28 0.0006 33.2 4.1 34 115-148 152-188 (326)
263 PRK05636 replicative DNA helic 46.0 32 0.0007 35.2 4.8 40 15-54 266-306 (505)
264 PRK03372 ppnK inorganic polyph 46.0 28 0.00062 32.9 4.1 54 348-419 71-128 (306)
265 TIGR00959 ffh signal recogniti 45.7 92 0.002 31.1 7.8 42 13-54 98-140 (428)
266 KOG1210 Predicted 3-ketosphing 45.6 35 0.00075 32.2 4.5 42 7-51 25-66 (331)
267 PRK14619 NAD(P)H-dependent gly 45.5 25 0.00054 33.3 3.8 34 13-51 3-36 (308)
268 PF06925 MGDG_synth: Monogalac 45.4 54 0.0012 27.8 5.5 24 27-50 1-25 (169)
269 PRK02231 ppnK inorganic polyph 44.7 24 0.00053 32.8 3.4 57 344-418 37-97 (272)
270 KOG0780 Signal recognition par 44.3 1.2E+02 0.0026 29.7 7.8 42 13-54 100-141 (483)
271 PF03403 PAF-AH_p_II: Platelet 44.2 24 0.00053 34.6 3.5 45 7-51 92-136 (379)
272 cd02032 Bchl_like This family 43.9 37 0.00081 31.3 4.7 37 15-51 1-37 (267)
273 cd03466 Nitrogenase_NifN_2 Nit 43.5 1E+02 0.0022 30.8 8.0 24 115-141 372-396 (429)
274 CHL00072 chlL photochlorophyll 43.4 43 0.00092 31.5 5.0 39 15-53 1-39 (290)
275 cd07035 TPP_PYR_POX_like Pyrim 43.4 1.7E+02 0.0038 24.1 8.3 26 354-379 62-93 (155)
276 cd02037 MRP-like MRP (Multiple 43.0 71 0.0015 27.0 5.9 32 21-52 7-38 (169)
277 cd01840 SGNH_hydrolase_yrhL_li 42.9 82 0.0018 26.0 6.2 39 272-311 50-88 (150)
278 TIGR01283 nifE nitrogenase mol 42.7 65 0.0014 32.5 6.5 33 14-51 326-358 (456)
279 TIGR01281 DPOR_bchL light-inde 42.5 41 0.0009 31.0 4.7 37 15-51 1-37 (268)
280 TIGR00640 acid_CoA_mut_C methy 42.3 51 0.0011 26.8 4.6 57 13-69 1-60 (132)
281 PRK07773 replicative DNA helic 41.9 54 0.0012 36.3 6.1 39 16-54 219-258 (886)
282 PRK01185 ppnK inorganic polyph 41.5 41 0.00089 31.3 4.4 53 349-419 52-105 (271)
283 PLN00016 RNA-binding protein; 40.9 38 0.00082 33.2 4.4 43 9-51 47-89 (378)
284 PRK12921 2-dehydropantoate 2-r 40.9 31 0.00067 32.5 3.7 31 15-50 1-31 (305)
285 TIGR01007 eps_fam capsular exo 40.8 54 0.0012 28.7 5.0 38 14-51 16-55 (204)
286 PLN02929 NADH kinase 40.6 34 0.00075 32.2 3.8 66 348-419 63-137 (301)
287 PRK04148 hypothetical protein; 40.5 59 0.0013 26.6 4.6 37 9-51 12-48 (134)
288 PRK13789 phosphoribosylamine-- 40.4 53 0.0011 32.9 5.3 34 13-51 3-36 (426)
289 PRK01175 phosphoribosylformylg 39.9 3.1E+02 0.0067 25.4 10.3 56 13-71 2-57 (261)
290 cd02034 CooC The accessory pro 39.7 69 0.0015 25.3 4.9 37 16-52 1-37 (116)
291 PRK01231 ppnK inorganic polyph 39.2 53 0.0011 31.0 4.8 53 349-419 62-118 (295)
292 PF03721 UDPG_MGDP_dh_N: UDP-g 39.1 46 0.00099 28.9 4.1 32 15-51 1-32 (185)
293 PF12695 Abhydrolase_5: Alpha/ 39.1 77 0.0017 25.4 5.4 34 17-50 1-34 (145)
294 PF06418 CTP_synth_N: CTP synt 39.1 38 0.00082 31.1 3.6 38 15-52 1-41 (276)
295 PRK11914 diacylglycerol kinase 39.0 89 0.0019 29.5 6.5 80 276-379 13-96 (306)
296 PF03701 UPF0181: Uncharacteri 38.9 1.1E+02 0.0024 20.1 4.6 32 423-458 11-42 (51)
297 PLN02935 Bifunctional NADH kin 38.9 44 0.00095 33.8 4.4 54 348-419 261-318 (508)
298 PRK14075 pnk inorganic polypho 38.8 48 0.001 30.5 4.4 53 349-419 41-94 (256)
299 COG0504 PyrG CTP synthase (UTP 38.8 57 0.0012 32.7 5.0 39 15-53 1-42 (533)
300 PRK12342 hypothetical protein; 38.7 38 0.00083 31.1 3.7 102 21-144 26-145 (254)
301 PLN02695 GDP-D-mannose-3',5'-e 38.6 64 0.0014 31.5 5.5 41 6-50 13-53 (370)
302 PRK12475 thiamine/molybdopteri 38.3 2.4E+02 0.0052 27.2 9.3 33 13-50 23-56 (338)
303 PRK14478 nitrogenase molybdenu 38.0 62 0.0013 32.9 5.5 33 14-51 324-356 (475)
304 PRK05114 hypothetical protein; 37.8 1.1E+02 0.0024 20.6 4.7 32 423-458 11-42 (59)
305 PRK00005 fmt methionyl-tRNA fo 37.8 95 0.0021 29.5 6.4 32 15-51 1-32 (309)
306 PRK06029 3-octaprenyl-4-hydrox 37.7 42 0.00091 29.2 3.6 36 15-51 2-38 (185)
307 PRK03501 ppnK inorganic polyph 37.5 46 0.00099 30.8 4.0 53 350-419 40-97 (264)
308 TIGR00421 ubiX_pad polyprenyl 37.4 34 0.00075 29.6 3.0 34 17-51 2-35 (181)
309 TIGR01470 cysG_Nterm siroheme 37.2 2.9E+02 0.0063 24.3 11.9 144 272-438 9-164 (205)
310 PRK06719 precorrin-2 dehydroge 36.8 49 0.0011 27.9 3.8 33 13-50 12-44 (157)
311 PF06506 PrpR_N: Propionate ca 36.7 52 0.0011 28.2 4.1 109 26-147 17-155 (176)
312 COG2084 MmsB 3-hydroxyisobutyr 36.7 47 0.001 31.1 4.0 32 15-51 1-32 (286)
313 PRK13869 plasmid-partitioning 36.4 61 0.0013 32.2 5.0 39 14-52 120-160 (405)
314 COG4088 Predicted nucleotide k 36.3 42 0.0009 29.8 3.3 35 17-51 4-38 (261)
315 PF01695 IstB_IS21: IstB-like 36.1 70 0.0015 27.5 4.8 39 13-51 46-84 (178)
316 COG0552 FtsY Signal recognitio 35.5 1.2E+02 0.0025 29.1 6.3 42 12-53 137-178 (340)
317 PRK05632 phosphate acetyltrans 35.3 5.6E+02 0.012 27.5 12.3 35 16-50 4-39 (684)
318 PRK03359 putative electron tra 35.2 55 0.0012 30.1 4.1 30 115-144 112-148 (256)
319 COG2085 Predicted dinucleotide 35.1 59 0.0013 28.8 4.1 34 15-53 2-35 (211)
320 TIGR03026 NDP-sugDHase nucleot 35.1 50 0.0011 32.8 4.3 32 15-51 1-32 (411)
321 cd01968 Nitrogenase_NifE_I Nit 35.0 3.9E+02 0.0084 26.5 10.5 33 14-51 287-319 (410)
322 TIGR02113 coaC_strep phosphopa 34.9 48 0.001 28.6 3.5 36 16-52 2-37 (177)
323 cd08194 Fe-ADH6 Iron-containin 34.9 1.5E+02 0.0032 29.0 7.5 12 370-381 121-132 (375)
324 TIGR00147 lipid kinase, YegS/R 34.7 1.7E+02 0.0037 27.3 7.7 28 350-379 58-91 (293)
325 COG1698 Uncharacterized protei 34.7 1.2E+02 0.0027 22.6 4.9 48 408-458 17-65 (93)
326 PRK13768 GTPase; Provisional 34.5 1.3E+02 0.0028 27.6 6.6 38 15-52 3-40 (253)
327 PRK13054 lipid kinase; Reviewe 34.2 2.2E+02 0.0048 26.8 8.3 30 349-380 56-93 (300)
328 cd07037 TPP_PYR_MenD Pyrimidin 34.1 85 0.0018 26.6 4.9 27 353-379 62-94 (162)
329 PRK05784 phosphoribosylamine-- 34.0 1.4E+02 0.003 30.5 7.2 31 15-50 1-33 (486)
330 PF02702 KdpD: Osmosensitive K 33.8 69 0.0015 28.2 4.2 39 12-50 3-41 (211)
331 COG3349 Uncharacterized conser 33.6 42 0.00091 33.9 3.3 32 15-51 1-32 (485)
332 PF00551 Formyl_trans_N: Formy 33.6 98 0.0021 26.7 5.3 33 15-50 1-35 (181)
333 TIGR00521 coaBC_dfp phosphopan 33.5 47 0.001 32.8 3.6 39 13-52 2-40 (390)
334 cd07038 TPP_PYR_PDC_IPDC_like 33.5 2.9E+02 0.0063 23.2 8.8 28 352-379 60-93 (162)
335 PF02572 CobA_CobO_BtuR: ATP:c 33.4 1.6E+02 0.0034 25.3 6.4 58 14-71 3-66 (172)
336 TIGR00639 PurN phosphoribosylg 33.4 2.3E+02 0.005 24.7 7.6 52 15-69 1-57 (190)
337 PRK06988 putative formyltransf 32.9 1.4E+02 0.0031 28.3 6.8 32 15-51 3-34 (312)
338 PRK04761 ppnK inorganic polyph 32.9 33 0.00071 31.3 2.3 28 350-379 26-57 (246)
339 TIGR02195 heptsyl_trn_II lipop 32.9 2.9E+02 0.0062 26.3 9.0 100 14-144 174-279 (334)
340 cd02065 B12-binding_like B12 b 32.8 73 0.0016 25.1 4.2 34 17-50 2-35 (125)
341 PF03446 NAD_binding_2: NAD bi 32.7 45 0.00098 28.1 3.1 31 15-50 2-32 (163)
342 PRK14092 2-amino-4-hydroxy-6-h 32.7 1.1E+02 0.0023 26.0 5.2 31 271-301 5-35 (163)
343 PRK08229 2-dehydropantoate 2-r 32.5 47 0.001 31.9 3.5 32 15-51 3-34 (341)
344 PLN02948 phosphoribosylaminoim 32.5 6.1E+02 0.013 26.6 13.6 86 352-442 466-562 (577)
345 CHL00194 ycf39 Ycf39; Provisio 32.4 85 0.0018 29.7 5.2 33 15-51 1-33 (317)
346 PRK13337 putative lipid kinase 32.3 2E+02 0.0043 27.2 7.7 27 354-380 60-92 (304)
347 PRK14618 NAD(P)H-dependent gly 32.3 60 0.0013 31.0 4.2 33 14-51 4-36 (328)
348 COG0569 TrkA K+ transport syst 32.3 54 0.0012 29.5 3.6 32 15-51 1-32 (225)
349 COG0052 RpsB Ribosomal protein 32.1 32 0.0007 31.1 2.0 33 116-148 157-192 (252)
350 cd01141 TroA_d Periplasmic bin 31.9 61 0.0013 27.8 3.8 29 115-143 69-100 (186)
351 PF07015 VirC1: VirC1 protein; 31.8 1.1E+02 0.0024 27.6 5.3 43 15-57 1-45 (231)
352 PRK06027 purU formyltetrahydro 31.7 1.2E+02 0.0025 28.6 5.8 107 12-144 87-196 (286)
353 KOG0541 Alkyl hydroperoxide re 31.6 84 0.0018 26.3 4.1 36 15-50 44-86 (171)
354 PRK14076 pnk inorganic polypho 31.6 62 0.0013 33.8 4.3 53 349-419 348-404 (569)
355 PRK14620 NAD(P)H-dependent gly 31.5 53 0.0011 31.4 3.6 32 15-51 1-32 (326)
356 cd07025 Peptidase_S66 LD-Carbo 31.5 1E+02 0.0022 28.9 5.4 28 286-313 46-73 (282)
357 COG2210 Peroxiredoxin family p 31.3 95 0.0021 25.4 4.4 32 19-50 8-39 (137)
358 COG0240 GpsA Glycerol-3-phosph 31.2 68 0.0015 30.6 4.1 33 14-51 1-33 (329)
359 KOG0409 Predicted dehydrogenas 31.1 88 0.0019 29.4 4.7 40 6-50 27-66 (327)
360 COG4825 Uncharacterized membra 31.1 1.1E+02 0.0024 28.4 5.2 35 364-400 238-273 (395)
361 PRK14569 D-alanyl-alanine synt 31.1 1E+02 0.0022 29.0 5.5 38 13-50 2-43 (296)
362 PF02780 Transketolase_C: Tran 30.9 67 0.0015 25.5 3.6 37 12-50 7-43 (124)
363 KOG1111 N-acetylglucosaminyltr 30.9 5.1E+02 0.011 25.3 20.3 81 288-377 210-301 (426)
364 TIGR03018 pepcterm_TyrKin exop 30.9 1.1E+02 0.0024 26.9 5.4 43 11-53 31-76 (207)
365 PRK08410 2-hydroxyacid dehydro 30.9 2.1E+02 0.0046 27.1 7.6 97 271-414 144-247 (311)
366 PRK12367 short chain dehydroge 30.9 77 0.0017 28.8 4.5 44 5-51 3-47 (245)
367 PRK01077 cobyrinic acid a,c-di 30.9 1.7E+02 0.0036 29.6 7.2 37 15-51 3-41 (451)
368 PRK04946 hypothetical protein; 30.9 42 0.0009 29.0 2.5 57 291-365 112-169 (181)
369 PRK13055 putative lipid kinase 30.8 2.1E+02 0.0045 27.5 7.6 25 355-379 63-93 (334)
370 PRK07206 hypothetical protein; 30.3 2.3E+02 0.0051 28.0 8.2 32 15-51 3-34 (416)
371 PRK14477 bifunctional nitrogen 30.3 2E+02 0.0043 32.1 8.1 34 13-51 319-352 (917)
372 PRK08591 acetyl-CoA carboxylas 30.0 4.1E+02 0.0089 26.6 9.9 32 15-51 3-34 (451)
373 PRK00207 sulfur transfer compl 30.0 93 0.002 25.1 4.3 36 15-50 1-40 (128)
374 PRK13057 putative lipid kinase 30.0 1.5E+02 0.0032 27.7 6.3 30 348-379 49-82 (287)
375 PTZ00318 NADH dehydrogenase-li 29.8 65 0.0014 32.1 4.1 40 7-51 3-42 (424)
376 PRK09288 purT phosphoribosylgl 29.8 1.4E+02 0.0031 29.3 6.4 40 6-51 5-44 (395)
377 TIGR00064 ftsY signal recognit 29.6 1.3E+02 0.0027 28.1 5.6 41 12-52 70-110 (272)
378 PRK13011 formyltetrahydrofolat 29.5 1.6E+02 0.0035 27.6 6.4 109 11-144 86-196 (286)
379 PRK13059 putative lipid kinase 29.4 2.4E+02 0.0051 26.5 7.6 29 350-380 57-91 (295)
380 PF01497 Peripla_BP_2: Peripla 29.4 76 0.0017 28.3 4.2 32 115-146 60-94 (238)
381 PRK09841 cryptic autophosphory 29.3 5.7E+02 0.012 27.7 11.3 39 14-52 530-570 (726)
382 TIGR01915 npdG NADPH-dependent 29.3 59 0.0013 29.0 3.3 31 15-50 1-32 (219)
383 PF05225 HTH_psq: helix-turn-h 29.1 79 0.0017 20.1 3.0 27 405-433 1-27 (45)
384 PF06564 YhjQ: YhjQ protein; 29.0 89 0.0019 28.5 4.4 36 15-50 1-38 (243)
385 PRK03094 hypothetical protein; 29.0 51 0.0011 24.1 2.2 20 31-50 10-29 (80)
386 KOG1455 Lysophospholipase [Lip 28.9 1.3E+02 0.0028 28.4 5.3 43 8-50 47-90 (313)
387 PF13450 NAD_binding_8: NAD(P) 28.7 70 0.0015 22.4 3.0 21 31-51 8-28 (68)
388 COG0205 PfkA 6-phosphofructoki 28.6 1.2E+02 0.0026 29.3 5.4 38 14-51 2-41 (347)
389 cd08181 PPD-like 1,3-propanedi 28.5 1.9E+02 0.0042 28.0 7.0 11 371-381 124-134 (357)
390 PF00070 Pyr_redox: Pyridine n 28.4 91 0.002 22.4 3.7 22 30-51 10-31 (80)
391 COG0451 WcaG Nucleoside-diphos 28.4 1.2E+02 0.0025 28.4 5.4 32 16-51 2-33 (314)
392 PF00289 CPSase_L_chain: Carba 28.2 1.7E+02 0.0037 22.9 5.4 70 287-368 10-89 (110)
393 PRK03708 ppnK inorganic polyph 28.2 40 0.00086 31.5 2.1 29 349-379 57-88 (277)
394 PF03720 UDPG_MGDP_dh_C: UDP-g 28.2 70 0.0015 24.7 3.2 22 29-50 17-38 (106)
395 cd01075 NAD_bind_Leu_Phe_Val_D 28.2 73 0.0016 28.0 3.7 31 13-48 27-57 (200)
396 PF09001 DUF1890: Domain of un 28.1 65 0.0014 26.3 2.9 27 25-51 10-36 (139)
397 cd01983 Fer4_NifH The Fer4_Nif 28.1 1.3E+02 0.0029 21.7 4.8 33 17-49 2-34 (99)
398 cd00316 Oxidoreductase_nitroge 28.0 3.5E+02 0.0076 26.5 8.9 26 115-143 348-374 (399)
399 PRK06111 acetyl-CoA carboxylas 27.8 4.7E+02 0.01 26.2 9.9 32 15-51 3-34 (450)
400 PRK04940 hypothetical protein; 27.8 1.5E+02 0.0032 25.7 5.3 30 115-144 60-91 (180)
401 PF00862 Sucrose_synth: Sucros 27.6 1E+02 0.0022 31.3 4.8 108 24-144 295-433 (550)
402 PRK15424 propionate catabolism 27.6 1.3E+02 0.0028 31.1 5.8 30 349-381 64-93 (538)
403 TIGR00853 pts-lac PTS system, 27.5 1.5E+02 0.0032 22.5 4.8 38 13-50 2-39 (95)
404 PLN02327 CTP synthase 27.4 92 0.002 32.1 4.5 39 15-53 1-42 (557)
405 PLN02712 arogenate dehydrogena 27.4 66 0.0014 34.3 3.7 42 4-50 359-400 (667)
406 PF07894 DUF1669: Protein of u 27.2 1.1E+02 0.0025 28.4 4.7 46 92-144 132-183 (284)
407 PF05693 Glycogen_syn: Glycoge 27.2 76 0.0017 33.0 3.9 95 341-436 461-566 (633)
408 PRK06180 short chain dehydroge 27.2 1E+02 0.0022 28.4 4.7 33 16-51 5-37 (277)
409 COG2267 PldB Lysophospholipase 27.1 1.1E+02 0.0023 29.0 4.8 38 13-50 32-69 (298)
410 TIGR03453 partition_RepA plasm 27.0 1E+02 0.0023 30.3 4.9 41 12-52 101-143 (387)
411 PRK00652 lpxK tetraacyldisacch 26.9 1.2E+02 0.0026 29.1 5.0 39 16-54 51-91 (325)
412 PRK15438 erythronate-4-phospha 26.9 2.6E+02 0.0057 27.5 7.5 63 272-362 116-178 (378)
413 COG3140 Uncharacterized protei 26.9 1.9E+02 0.004 19.3 4.3 31 424-458 12-42 (60)
414 cd00861 ProRS_anticodon_short 26.9 1.1E+02 0.0025 22.5 4.1 36 15-50 2-39 (94)
415 COG1327 Predicted transcriptio 26.3 84 0.0018 26.1 3.3 62 355-418 31-93 (156)
416 PRK05579 bifunctional phosphop 26.3 74 0.0016 31.5 3.6 39 13-52 5-43 (399)
417 PHA02857 monoglyceride lipase; 26.0 1.1E+02 0.0023 28.1 4.6 38 13-50 23-60 (276)
418 TIGR01162 purE phosphoribosyla 25.9 4E+02 0.0087 22.4 7.6 113 287-437 38-156 (156)
419 TIGR02700 flavo_MJ0208 archaeo 25.8 95 0.0021 28.1 4.0 30 23-52 8-39 (234)
420 PRK15469 ghrA bifunctional gly 25.7 3.4E+02 0.0074 25.8 7.9 70 272-366 136-205 (312)
421 PRK06718 precorrin-2 dehydroge 25.7 93 0.002 27.4 3.9 34 13-51 9-42 (202)
422 PLN03064 alpha,alpha-trehalose 25.6 4.4E+02 0.0096 29.4 9.6 103 339-458 446-560 (934)
423 cd07062 Peptidase_S66_mccF_lik 25.4 1.3E+02 0.0029 28.5 5.1 28 286-313 50-77 (308)
424 TIGR01963 PHB_DH 3-hydroxybuty 25.4 1.2E+02 0.0026 27.3 4.8 33 16-51 2-34 (255)
425 PF07905 PucR: Purine cataboli 25.4 3.5E+02 0.0075 21.5 7.7 42 263-308 36-78 (123)
426 COG0162 TyrS Tyrosyl-tRNA synt 25.4 75 0.0016 31.3 3.4 37 14-51 34-73 (401)
427 PRK02645 ppnK inorganic polyph 25.3 54 0.0012 31.1 2.4 29 349-379 57-89 (305)
428 PF04244 DPRP: Deoxyribodipyri 25.3 68 0.0015 28.9 2.9 25 27-51 47-71 (224)
429 TIGR01380 glut_syn glutathione 25.1 1.2E+02 0.0026 28.9 4.7 37 15-51 1-40 (312)
430 PF03698 UPF0180: Uncharacteri 25.0 64 0.0014 23.7 2.2 21 31-51 10-30 (80)
431 PRK05708 2-dehydropantoate 2-r 25.0 64 0.0014 30.5 2.9 33 14-51 2-34 (305)
432 PRK12829 short chain dehydroge 25.0 1.4E+02 0.003 27.0 5.2 35 13-51 10-44 (264)
433 cd03785 GT1_MurG MurG is an N- 25.0 4E+02 0.0086 25.2 8.6 36 276-312 2-37 (350)
434 COG0678 AHP1 Peroxiredoxin [Po 24.9 1.3E+02 0.0027 25.2 4.0 38 13-50 36-80 (165)
435 KOG3062 RNA polymerase II elon 24.9 1.4E+02 0.003 27.0 4.6 34 17-50 4-38 (281)
436 PRK08155 acetolactate synthase 24.9 1.5E+02 0.0032 30.9 5.8 80 289-378 14-109 (564)
437 PRK05579 bifunctional phosphop 24.9 1.5E+02 0.0032 29.4 5.4 22 30-51 216-237 (399)
438 PRK06835 DNA replication prote 24.9 1.4E+02 0.0029 28.8 5.1 38 14-51 183-220 (329)
439 PRK06567 putative bifunctional 24.8 79 0.0017 35.1 3.8 35 11-50 380-414 (1028)
440 cd05014 SIS_Kpsf KpsF-like pro 24.7 2.1E+02 0.0045 22.5 5.6 42 23-65 55-96 (128)
441 COG0062 Uncharacterized conser 24.7 1.5E+02 0.0032 26.3 4.8 43 8-53 43-87 (203)
442 PF02776 TPP_enzyme_N: Thiamin 24.6 1.9E+02 0.0042 24.5 5.6 30 349-380 64-99 (172)
443 PF01380 SIS: SIS domain SIS d 24.6 1.4E+02 0.003 23.6 4.5 38 13-51 52-89 (131)
444 cd01147 HemV-2 Metal binding p 24.5 1E+02 0.0023 28.0 4.2 30 115-144 74-107 (262)
445 PF03641 Lysine_decarbox: Poss 24.4 1.4E+02 0.0029 24.3 4.3 37 343-379 46-92 (133)
446 PF06180 CbiK: Cobalt chelatas 24.4 1.1E+02 0.0024 28.2 4.2 40 273-312 1-43 (262)
447 PRK13982 bifunctional SbtC-lik 24.3 95 0.0021 31.5 4.0 39 14-53 70-108 (475)
448 cd03818 GT1_ExpC_like This fam 24.2 3.2E+02 0.007 26.6 7.9 25 288-312 10-34 (396)
449 PLN02211 methyl indole-3-aceta 24.2 1.4E+02 0.0029 27.7 4.9 35 15-50 19-53 (273)
450 COG0771 MurD UDP-N-acetylmuram 24.1 1.1E+02 0.0025 30.6 4.5 33 14-51 7-39 (448)
451 PRK03767 NAD(P)H:quinone oxido 24.1 1.4E+02 0.003 26.2 4.7 36 15-50 2-39 (200)
452 PRK07574 formate dehydrogenase 24.1 3.1E+02 0.0068 27.0 7.5 74 272-368 192-265 (385)
453 COG1737 RpiR Transcriptional r 24.1 1.7E+02 0.0037 27.3 5.5 91 263-385 123-218 (281)
454 TIGR02114 coaB_strep phosphopa 24.1 95 0.002 28.0 3.7 21 30-50 27-47 (227)
455 COG4635 HemG Flavodoxin [Energ 24.0 1.4E+02 0.0031 25.1 4.3 36 15-50 1-37 (175)
456 PRK07454 short chain dehydroge 24.0 1.5E+02 0.0033 26.4 5.2 35 14-51 5-39 (241)
457 cd06559 Endonuclease_V Endonuc 24.0 1E+02 0.0022 27.4 3.7 30 115-144 93-130 (208)
458 PRK00094 gpsA NAD(P)H-dependen 23.9 90 0.0019 29.6 3.8 32 15-51 2-33 (325)
459 PRK12315 1-deoxy-D-xylulose-5- 23.8 7.9E+02 0.017 25.8 10.8 52 357-417 524-580 (581)
460 PRK00257 erythronate-4-phospha 23.8 3.2E+02 0.007 26.8 7.5 63 272-362 116-178 (381)
461 COG2120 Uncharacterized protei 23.7 1.4E+02 0.003 27.1 4.7 41 10-50 6-46 (237)
462 PF10093 DUF2331: Uncharacteri 23.6 7E+02 0.015 24.4 10.2 165 281-459 187-374 (374)
463 PRK06932 glycerate dehydrogena 23.6 2.8E+02 0.0061 26.4 7.0 63 271-362 146-208 (314)
464 TIGR02201 heptsyl_trn_III lipo 23.6 3.3E+02 0.0072 26.0 7.7 27 115-143 260-287 (344)
465 TIGR00460 fmt methionyl-tRNA f 23.6 1.1E+02 0.0024 29.1 4.2 32 15-51 1-32 (313)
466 PF01372 Melittin: Melittin; 23.4 9.6 0.00021 20.6 -1.7 17 360-376 1-17 (26)
467 PLN02727 NAD kinase 23.4 1.1E+02 0.0025 33.4 4.5 54 348-419 742-799 (986)
468 PRK01372 ddl D-alanine--D-alan 23.4 1.5E+02 0.0033 27.8 5.2 39 13-51 3-45 (304)
469 PRK08462 biotin carboxylase; V 23.3 7.1E+02 0.015 24.9 10.2 33 15-52 5-37 (445)
470 CHL00067 rps2 ribosomal protei 23.2 66 0.0014 29.1 2.4 36 115-150 161-199 (230)
471 PRK10749 lysophospholipase L2; 23.1 1.4E+02 0.0031 28.4 5.0 35 16-50 55-89 (330)
472 TIGR02853 spore_dpaA dipicolin 23.1 1.6E+02 0.0034 27.7 5.1 23 29-51 11-33 (287)
473 cd05017 SIS_PGI_PMI_1 The memb 23.1 1.1E+02 0.0025 24.0 3.6 57 16-73 45-101 (119)
474 PRK06487 glycerate dehydrogena 23.1 3.2E+02 0.0069 26.0 7.2 62 271-362 147-208 (317)
475 cd03113 CTGs CTP synthetase (C 23.0 1.5E+02 0.0032 27.1 4.5 38 16-53 1-41 (255)
476 cd02072 Glm_B12_BD B12 binding 22.9 1.3E+02 0.0028 24.4 3.8 54 16-69 1-57 (128)
477 cd03412 CbiK_N Anaerobic cobal 22.8 1.6E+02 0.0035 23.7 4.4 38 273-310 1-40 (127)
478 PLN02657 3,8-divinyl protochlo 22.8 1.7E+02 0.0038 28.7 5.6 36 12-51 58-93 (390)
479 PF02302 PTS_IIB: PTS system, 22.8 1.3E+02 0.0028 22.1 3.7 35 16-50 1-36 (90)
480 PRK10037 cell division protein 22.7 1.2E+02 0.0027 27.5 4.2 29 23-51 11-39 (250)
481 PRK10422 lipopolysaccharide co 22.7 1.6E+02 0.0034 28.4 5.2 27 115-143 262-289 (352)
482 COG2159 Predicted metal-depend 22.5 4.4E+02 0.0096 24.7 8.0 110 237-367 96-210 (293)
483 COG0299 PurN Folate-dependent 22.4 3.9E+02 0.0085 23.4 6.8 133 274-434 52-186 (200)
484 PRK12827 short chain dehydroge 22.4 1.8E+02 0.004 25.9 5.4 33 14-50 6-38 (249)
485 PF10727 Rossmann-like: Rossma 22.4 1.5E+02 0.0033 23.9 4.2 37 9-50 5-41 (127)
486 PRK06222 ferredoxin-NADP(+) re 22.3 2E+02 0.0044 26.8 5.7 36 14-51 98-133 (281)
487 PRK10916 ADP-heptose:LPS hepto 22.3 1.5E+02 0.0033 28.5 5.0 27 115-143 261-288 (348)
488 PHA02519 plasmid partition pro 22.2 1.6E+02 0.0034 29.1 5.0 37 13-49 104-142 (387)
489 TIGR01278 DPOR_BchB light-inde 22.2 1.2E+02 0.0026 31.2 4.4 26 115-143 364-390 (511)
490 TIGR02699 archaeo_AfpA archaeo 22.1 1.2E+02 0.0025 26.1 3.6 28 25-52 9-38 (174)
491 COG0467 RAD55 RecA-superfamily 22.0 1.8E+02 0.0039 26.6 5.3 43 12-54 21-63 (260)
492 TIGR00337 PyrG CTP synthase. C 22.0 1.4E+02 0.003 30.6 4.6 39 15-53 1-42 (525)
493 PF07991 IlvN: Acetohydroxy ac 21.9 76 0.0016 26.9 2.4 52 13-69 3-55 (165)
494 TIGR03837 efp_adjacent_2 conse 21.9 1.1E+02 0.0025 29.6 3.8 28 24-51 10-38 (371)
495 PRK06914 short chain dehydroge 21.8 1.5E+02 0.0033 27.2 4.8 33 16-51 4-36 (280)
496 PRK15059 tartronate semialdehy 21.8 1E+02 0.0022 29.0 3.5 31 15-50 1-31 (292)
497 PF09580 Spore_YhcN_YlaJ: Spor 21.8 4.4E+02 0.0096 22.3 7.3 34 423-460 142-175 (177)
498 PRK08309 short chain dehydroge 21.7 1.7E+02 0.0037 25.1 4.6 32 15-51 1-32 (177)
499 CHL00076 chlB photochlorophyll 21.7 1.1E+02 0.0025 31.4 4.1 25 115-142 374-399 (513)
500 cd00672 CysRS_core catalytic c 21.7 1.5E+02 0.0032 26.4 4.4 28 24-51 35-65 (213)
No 1
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.9e-68 Score=524.07 Aligned_cols=439 Identities=45% Similarity=0.797 Sum_probs=344.8
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCCCCC-CCCCCceEEeCCCCCCCCC-CC-CHHHHHHHHHH
Q 012563 13 NGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNSPNS-CNYPHFDFHSISDGLTDPS-AE-DSTTILITLNA 89 (460)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~ 89 (460)
.+.||+++|+|++||++|++.||+.|+.+|+.|||++++.+.... ....++++..+|++++++. +. ....++..+..
T Consensus 6 ~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~~~~~~~i~~~~ip~glp~~~~~~~~~~~~~~~~~~ 85 (451)
T PLN02410 6 ARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSPSDDFTDFQFVTIPESLPESDFKNLGPIEFLHKLNK 85 (451)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccccccCCCCeEEEeCCCCCCcccccccCHHHHHHHHHH
Confidence 467999999999999999999999999999999999998765321 1124699999998887642 22 13345555555
Q ss_pred hcchhHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH-HHhhcCCCeEEEeCccHHHHHHHhhcccccccC-CCCCC
Q 012563 90 KCMVPFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH-VADEFKLPTIILQTHSVSGYLGIAAYPFLRDKG-YVPIQ 167 (460)
Q Consensus 90 ~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~-~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~-~~p~~ 167 (460)
.+...+.+.++++..+... +++|||+|.++.|+. +|.++|||++.++++++...+.+.+++...... ..|..
T Consensus 86 ~~~~~~~~~L~~l~~~~~~------p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~~ 159 (451)
T PLN02410 86 ECQVSFKDCLGQLVLQQGN------EIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLAPLK 159 (451)
T ss_pred HhHHHHHHHHHHHHhccCC------CcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCCCcc
Confidence 5566667777766432222 679999999999999 999999999999999999887666533221111 11211
Q ss_pred C--CCCCCccCCCCCCCCCCCCCcccCCCCCcHHHHHHHHhhhccCceEEecchHHhhHHHhhcCccccCCCCceeeccc
Q 012563 168 D--PQSESPVIEYPPLRVKDIPKLETRYPEYNYPLVSAMVNNIKASSGMIWNTFEELEQAALSTLPEEYSGIPVFPIGPF 245 (460)
Q Consensus 168 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~pv~~vGpl 245 (460)
. ......+|++++++..+++.............+.... ...+++++++|||++||+..++.++.. +++|+++|||+
T Consensus 160 ~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~-~~~~~~~vlvNTf~eLE~~~~~~l~~~-~~~~v~~vGpl 237 (451)
T PLN02410 160 EPKGQQNELVPEFHPLRCKDFPVSHWASLESIMELYRNTV-DKRTASSVIINTASCLESSSLSRLQQQ-LQIPVYPIGPL 237 (451)
T ss_pred ccccCccccCCCCCCCChHHCcchhcCCcHHHHHHHHHHh-hcccCCEEEEeChHHhhHHHHHHHHhc-cCCCEEEeccc
Confidence 1 1122357888777777776432111112222222222 346788999999999999999999876 66789999999
Q ss_pred ccCCCCCCCCccccccchhhhhccCCCCeEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEECCCCCCCchhhccCch
Q 012563 246 HKYFPASSSSLLSQDQSSISWLDKQAPKSVIYVSFGSVAAINETEFLEIAWGLANSRVPFLWVVRPGLVDGVEWLEALPK 325 (460)
Q Consensus 246 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~ 325 (460)
+..... .......+.++.+|||++++++||||||||...++.+++.+++.+|+.++++|+|+++.....+.++...+|+
T Consensus 238 ~~~~~~-~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~lp~ 316 (451)
T PLN02410 238 HLVASA-PTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIESLPK 316 (451)
T ss_pred ccccCC-CccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhcCCh
Confidence 864321 0011122345789999998899999999999999999999999999999999999998542222222235899
Q ss_pred hHHhhhCCCceEEeccchHHHhccCCCcceeeccCchhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCccC
Q 012563 326 GYLEMVDGRGYIVQWAPQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLE 405 (460)
Q Consensus 326 ~~~~~~~~~~~~~~~vp~~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~ 405 (460)
+|++|.++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.||+|+.+...++
T Consensus 317 ~f~er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~ 396 (451)
T PLN02410 317 EFSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVEGDLD 396 (451)
T ss_pred hHHHhccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999875699999976789
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC
Q 012563 406 KKEIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHILSF 460 (460)
Q Consensus 406 ~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 460 (460)
.++|+++|+++|.+++++.||++|+++++.+++|+++||||+++++++++.++++
T Consensus 397 ~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~~ 451 (451)
T PLN02410 397 RGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRTL 451 (451)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Confidence 9999999999998766789999999999999999999999999999999999865
No 2
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=8.2e-65 Score=501.24 Aligned_cols=436 Identities=30% Similarity=0.545 Sum_probs=340.2
Q ss_pred CCCCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC----------C---CCCceEEeCCCCCCCCC
Q 012563 10 SPRNGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNSPNSC----------N---YPHFDFHSISDGLTDPS 76 (460)
Q Consensus 10 ~~~~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~~~----------~---~~~~~~~~~~~~~~~~~ 76 (460)
|...+.||+++|+|++||++|++.||+.|+.+|..|||++++.+..... . ...+.|..+|++++++.
T Consensus 3 ~~~~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~~~ 82 (480)
T PLN02555 3 SESSLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAEDD 82 (480)
T ss_pred CCCCCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCCCc
Confidence 3455789999999999999999999999999999999999986543211 0 11266666777776553
Q ss_pred CCC--HHHHHHHHHHhcchhHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH-HHhhcCCCeEEEeCccHHHHHHHh
Q 012563 77 AED--STTILITLNAKCMVPFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH-VADEFKLPTIILQTHSVSGYLGIA 153 (460)
Q Consensus 77 ~~~--~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~-~A~~lgiP~v~~~~~~~~~~~~~~ 153 (460)
+.. ...++..+...+...+.+.++++... .+ +++|||+|.++.|+. +|+++|||.+.++++++...+.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~------pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~ 155 (480)
T PLN02555 83 PRRQDLDLYLPQLELVGKREIPNLVKRYAEQ-GR------PVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYY 155 (480)
T ss_pred ccccCHHHHHHHHHHhhhHHHHHHHHHHhcc-CC------CceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHH
Confidence 322 33445555445556666666665322 11 459999999999999 999999999999999999888876
Q ss_pred hcccccccCCCCCCC---CCCCCccCCCCCCCCCCCCCcccC--CCCCcHHHHHHHHhhhccCceEEecchHHhhHHHhh
Q 012563 154 AYPFLRDKGYVPIQD---PQSESPVIEYPPLRVKDIPKLETR--YPEYNYPLVSAMVNNIKASSGMIWNTFEELEQAALS 228 (460)
Q Consensus 154 ~~~~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~ 228 (460)
+++. ...+... ......+|+++.++..+++.+... ........+.+..+...+++++++|||.+||+..++
T Consensus 156 ~~~~----~~~~~~~~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~ 231 (480)
T PLN02555 156 HYYH----GLVPFPTETEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIID 231 (480)
T ss_pred HHhh----cCCCcccccCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHH
Confidence 6432 1111111 112235889988888888864421 111122333444456677889999999999999998
Q ss_pred cCccccCCCCceeecccccCCCC--C--CCCccccccchhhhhccCCCCeEEEEEecccccCCHHHHHHHHHHHHhCCCC
Q 012563 229 TLPEEYSGIPVFPIGPFHKYFPA--S--SSSLLSQDQSSISWLDKQAPKSVIYVSFGSVAAINETEFLEIAWGLANSRVP 304 (460)
Q Consensus 229 ~~~~~~~~~pv~~vGpl~~~~~~--~--~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~ 304 (460)
.++.. .|++.|||+...... . .......++++.+|||+++++++|||||||+..++.+++.+++.+++.++++
T Consensus 232 ~l~~~---~~v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~ 308 (480)
T PLN02555 232 YMSKL---CPIKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVS 308 (480)
T ss_pred HHhhC---CCEEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCe
Confidence 88765 369999999754211 0 0111223456999999988889999999999999999999999999999999
Q ss_pred EEEEECCCCCCCchhhccCchhHHhhhCCCceEEeccchHHHhccCCCcceeeccCchhhHHHHhhCCCeeecCcccchh
Q 012563 305 FLWVVRPGLVDGVEWLEALPKGYLEMVDGRGYIVQWAPQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCLADQM 384 (460)
Q Consensus 305 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~DQ~ 384 (460)
|||+++............+|+++.++.++|+++++|+||.+||.|+++++|||||||||++||+++|||||++|+++||+
T Consensus 309 flW~~~~~~~~~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~ 388 (480)
T PLN02555 309 FLWVMRPPHKDSGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQV 388 (480)
T ss_pred EEEEEecCcccccchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccH
Confidence 99998743111000013478899999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhceeEeeC-----C-ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 012563 385 VNARYVSHVWRVGLHLE-----G-KLEKKEIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHIL 458 (460)
Q Consensus 385 ~na~~v~~~lG~G~~~~-----~-~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
.||+++++.||+|+.+. . .++.++|.++|+++|.+++++.+|+||++|++..++|+++||||+++++++++.+.
T Consensus 389 ~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~i~ 468 (480)
T PLN02555 389 TDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDKLV 468 (480)
T ss_pred HHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 99999988679999993 2 58999999999999987778899999999999999999999999999999999886
Q ss_pred c
Q 012563 459 S 459 (460)
Q Consensus 459 ~ 459 (460)
+
T Consensus 469 ~ 469 (480)
T PLN02555 469 R 469 (480)
T ss_pred h
Confidence 3
No 3
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=1.8e-64 Score=498.77 Aligned_cols=427 Identities=32% Similarity=0.526 Sum_probs=329.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC----CCCCceEEeCCCCCCCCCCCCHHHHHHHHH
Q 012563 13 NGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNSPNSC----NYPHFDFHSISDGLTDPSAEDSTTILITLN 88 (460)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (460)
.+.||+++|+|++||++|++.||+.|+.+|++|||++++.+..... ...+++++.+|++++.+...+...+...+.
T Consensus 5 ~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~lp~g~~~~~~~~~~~l~~a~~ 84 (448)
T PLN02562 5 QRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDPKLGITFMSISDGQDDDPPRDFFSIENSME 84 (448)
T ss_pred CCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCCCCCEEEEECCCCCCCCccccHHHHHHHHH
Confidence 4469999999999999999999999999999999999986653322 123699999998765432112323333333
Q ss_pred HhcchhHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH-HHhhcCCCeEEEeCccHHHHHHHhhcccccccCCCCCC
Q 012563 89 AKCMVPFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH-VADEFKLPTIILQTHSVSGYLGIAAYPFLRDKGYVPIQ 167 (460)
Q Consensus 89 ~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~-~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 167 (460)
..+...+.+.++++... . +++|||+|.+..|+. +|+++|||++.++++++...+.+.+.+........+..
T Consensus 85 ~~~~~~l~~ll~~l~~~--~------pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~ 156 (448)
T PLN02562 85 NTMPPQLERLLHKLDED--G------EVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISET 156 (448)
T ss_pred HhchHHHHHHHHHhcCC--C------CcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhccccccc
Confidence 34555556666555321 1 469999999999999 99999999999999988877766544332222111111
Q ss_pred C--CC--CCCccCCCCCCCCCCCCCcccCC--CCCcHHHHHHHHhhhccCceEEecchHHhhHHHhhcCccc---cCCCC
Q 012563 168 D--PQ--SESPVIEYPPLRVKDIPKLETRY--PEYNYPLVSAMVNNIKASSGMIWNTFEELEQAALSTLPEE---YSGIP 238 (460)
Q Consensus 168 ~--~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~---~~~~p 238 (460)
. .. ....+|+++.++..+++...... .......+.+..+...+++++++|||.+||+..++..+.. ...++
T Consensus 157 ~~~~~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~~ 236 (448)
T PLN02562 157 GCPRQLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNNGQNPQ 236 (448)
T ss_pred cccccccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhccccCCC
Confidence 0 01 11247888778888888644221 2222444555556677788999999999999887765421 02245
Q ss_pred ceeecccccCCCCCC--CCccccccchhhhhccCCCCeEEEEEecccc-cCCHHHHHHHHHHHHhCCCCEEEEECCCCCC
Q 012563 239 VFPIGPFHKYFPASS--SSLLSQDQSSISWLDKQAPKSVIYVSFGSVA-AINETEFLEIAWGLANSRVPFLWVVRPGLVD 315 (460)
Q Consensus 239 v~~vGpl~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~-~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~ 315 (460)
++.|||++....... ...++.+.++.+|||+++++++|||||||+. .++.+++.+++.++++++++|||+++...
T Consensus 237 v~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~~-- 314 (448)
T PLN02562 237 ILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPVW-- 314 (448)
T ss_pred EEEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCCc--
Confidence 999999986542100 1113445557799999888899999999986 47899999999999999999999997532
Q ss_pred CchhhccCchhHHhhhCCCceEEeccchHHHhccCCCcceeeccCchhhHHHHhhCCCeeecCcccchhhHHHHHHHhhc
Q 012563 316 GVEWLEALPKGYLEMVDGRGYIVQWAPQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCLADQMVNARYVSHVWR 395 (460)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG 395 (460)
...+|+++.++.++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.+|
T Consensus 315 ----~~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g 390 (448)
T PLN02562 315 ----REGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWK 390 (448)
T ss_pred ----hhhCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhC
Confidence 1248889999999999999999999999999999999999999999999999999999999999999999987469
Q ss_pred eeEeeCCccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 012563 396 VGLHLEGKLEKKEIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHIL 458 (460)
Q Consensus 396 ~G~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
+|+.+. .++.++|.++|+++|.+ ++||+||++++++++++ .+||||.++++++++.++
T Consensus 391 ~g~~~~-~~~~~~l~~~v~~~l~~---~~~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 391 IGVRIS-GFGQKEVEEGLRKVMED---SGMGERLMKLRERAMGE-EARLRSMMNFTTLKDELK 448 (448)
T ss_pred ceeEeC-CCCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhC
Confidence 998886 58999999999999998 89999999999999877 667999999999999874
No 4
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.1e-64 Score=493.15 Aligned_cols=419 Identities=29% Similarity=0.494 Sum_probs=332.5
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC--CCCCceEEeCCCCCCCCC-CCC--HHHHHHH
Q 012563 12 RNGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNSPNSC--NYPHFDFHSISDGLTDPS-AED--STTILIT 86 (460)
Q Consensus 12 ~~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~ 86 (460)
+++.||+++|+|++||++|++.||+.|+.+|+.|||++++.+..... ..++++++.+|++++++. +.. ...++..
T Consensus 3 ~~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~~~~~i~~~~ipdglp~~~~~~~~~~~~~~~~ 82 (449)
T PLN02173 3 KMRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLDPSSPISIATISDGYDQGGFSSAGSVPEYLQN 82 (449)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccCCCCCEEEEEcCCCCCCcccccccCHHHHHHH
Confidence 45579999999999999999999999999999999999986654321 124699999998887632 222 3455555
Q ss_pred HHHhcchhHHHHHHHHhhcCCCCCCCCCCc-eEEEEcCcchHHH-HHhhcCCCeEEEeCccHHHHHHHhhcccccccCCC
Q 012563 87 LNAKCMVPFRNCLAKLVSNTNNNNAQEDSV-ACLITDFLWQFTH-VADEFKLPTIILQTHSVSGYLGIAAYPFLRDKGYV 164 (460)
Q Consensus 87 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~~p-DlvI~D~~~~~~~-~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (460)
+...+...+.+.++.+.... +| +|||+|.+.+|+. +|+++|||.+.++++++.....+++ +....
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~--------~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~-~~~~~---- 149 (449)
T PLN02173 83 FKTFGSKTVADIIRKHQSTD--------NPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYL-SYINN---- 149 (449)
T ss_pred HHHhhhHHHHHHHHHhhccC--------CCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHh-HHhcc----
Confidence 55566666777776654321 44 9999999999999 9999999999999988887655543 11100
Q ss_pred CCCCCCCCCccCCCCCCCCCCCCCcccCC--CCCcHHHHHHHHhhhccCceEEecchHHhhHHHhhcCccccCCCCceee
Q 012563 165 PIQDPQSESPVIEYPPLRVKDIPKLETRY--PEYNYPLVSAMVNNIKASSGMIWNTFEELEQAALSTLPEEYSGIPVFPI 242 (460)
Q Consensus 165 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~pv~~v 242 (460)
......+|+++.++..+++...... .......+.+..+...+++++++|||.+||+..++.++.. .|++.|
T Consensus 150 ----~~~~~~~pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~---~~v~~V 222 (449)
T PLN02173 150 ----GSLTLPIKDLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV---CPVLTI 222 (449)
T ss_pred ----CCccCCCCCCCCCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc---CCeeEE
Confidence 1122336788888888888644221 1122333444456678889999999999999999888654 579999
Q ss_pred cccccCCC-------CCCC--Ccc--ccccchhhhhccCCCCeEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEECC
Q 012563 243 GPFHKYFP-------ASSS--SLL--SQDQSSISWLDKQAPKSVIYVSFGSVAAINETEFLEIAWGLANSRVPFLWVVRP 311 (460)
Q Consensus 243 Gpl~~~~~-------~~~~--~~~--~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 311 (460)
||+.+... .+.. ..+ ..++++.+||+.++.+++|||||||...++.+++.+++.+| .+.+|+|+++.
T Consensus 223 GPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~flWvvr~ 300 (449)
T PLN02173 223 GPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYLWVVRA 300 (449)
T ss_pred cccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEEEEEec
Confidence 99974210 0000 001 22345899999998999999999999999999999999999 67889999985
Q ss_pred CCCCCchhhccCchhHHhhh-CCCceEEeccchHHHhccCCCcceeeccCchhhHHHHhhCCCeeecCcccchhhHHHHH
Q 012563 312 GLVDGVEWLEALPKGYLEMV-DGRGYIVQWAPQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCLADQMVNARYV 390 (460)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~vp~~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v 390 (460)
.. ...+|+++.++. ++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++
T Consensus 301 ~~------~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v 374 (449)
T PLN02173 301 SE------ESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYI 374 (449)
T ss_pred cc------hhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHHHH
Confidence 32 124788888887 58889999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhceeEeeCC-----ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 012563 391 SHVWRVGLHLEG-----KLEKKEIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHIL 458 (460)
Q Consensus 391 ~~~lG~G~~~~~-----~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
++.||+|+.+.. .++.++|+++|+++|.+++++.+|++|++++++.++|+++||||.++++++++.+.
T Consensus 375 ~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~~ 447 (449)
T PLN02173 375 QDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKIQ 447 (449)
T ss_pred HHHhCceEEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc
Confidence 986799988853 25899999999999988778899999999999999999999999999999999875
No 5
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=6.6e-64 Score=493.43 Aligned_cols=430 Identities=31% Similarity=0.533 Sum_probs=329.1
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHH-hCCCeEEEEeCCCCCCCC----CCCCCceEEeCCC----CCCCCCCCCHHHH
Q 012563 13 NGRRVILFPLPFQGHINPMLQLGSILY-SKGFSITIIHTKFNSPNS----CNYPHFDFHSISD----GLTDPSAEDSTTI 83 (460)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~lA~~L~-~rGh~V~~~~~~~~~~~~----~~~~~~~~~~~~~----~~~~~~~~~~~~~ 83 (460)
++.||+++|+|++||++|++.||+.|+ ++|++|||++++.+.... ....++++..+|. ++++... .....
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p~~~glp~~~~-~~~~~ 82 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPSPDISGLVDPSA-HVVTK 82 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccccCCCceEEECCCccccCCCCCCc-cHHHH
Confidence 467999999999999999999999998 789999999998765322 1223688998884 3432111 12222
Q ss_pred HHHHHHhcchhHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH-HHhhcCCCeEEEeCccHHHHHHHhhcccccccC
Q 012563 84 LITLNAKCMVPFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH-VADEFKLPTIILQTHSVSGYLGIAAYPFLRDKG 162 (460)
Q Consensus 84 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~-~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 162 (460)
+......+...+++.++++ .. +|+|||+|.++.|+. +|+++|||++.++++++...+.+.+.+......
T Consensus 83 ~~~~~~~~~~~~~~~l~~~----~~------~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~ 152 (481)
T PLN02992 83 IGVIMREAVPTLRSKIAEM----HQ------KPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDI 152 (481)
T ss_pred HHHHHHHhHHHHHHHHHhc----CC------CCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhcccc
Confidence 2222233334444444443 22 689999999999999 999999999999999998876655443221110
Q ss_pred CCCCCCCCCCCccCCCCCCCCCCCCCcccCCCCCcHHHHHHHHhhhccCceEEecchHHhhHHHhhcCccc-cC----CC
Q 012563 163 YVPIQDPQSESPVIEYPPLRVKDIPKLETRYPEYNYPLVSAMVNNIKASSGMIWNTFEELEQAALSTLPEE-YS----GI 237 (460)
Q Consensus 163 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~-~~----~~ 237 (460)
..+.........+|+++.++..+++.............+.+......+++++++|||.+||+..++.++.. .+ ..
T Consensus 153 ~~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~~~ 232 (481)
T PLN02992 153 KEEHTVQRKPLAMPGCEPVRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVARV 232 (481)
T ss_pred ccccccCCCCcccCCCCccCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccccccCC
Confidence 00100011123578888888888874322223233445555566677889999999999999999887541 01 25
Q ss_pred CceeecccccCCCCCCCCccccccchhhhhccCCCCeEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEECCCCCC--
Q 012563 238 PVFPIGPFHKYFPASSSSLLSQDQSSISWLDKQAPKSVIYVSFGSVAAINETEFLEIAWGLANSRVPFLWVVRPGLVD-- 315 (460)
Q Consensus 238 pv~~vGpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~-- 315 (460)
|++.|||+...... ...++++.+|||+++.++||||||||...++.+++.+++.+|+.++++|||+++.....
T Consensus 233 ~v~~VGPl~~~~~~-----~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~ 307 (481)
T PLN02992 233 PVYPIGPLCRPIQS-----SKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSA 307 (481)
T ss_pred ceEEecCccCCcCC-----CcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCccccc
Confidence 79999999753211 12345589999998889999999999999999999999999999999999999742100
Q ss_pred ------------CchhhccCchhHHhhhCCCceEE-eccchHHHhccCCCcceeeccCchhhHHHHhhCCCeeecCcccc
Q 012563 316 ------------GVEWLEALPKGYLEMVDGRGYIV-QWAPQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCLAD 382 (460)
Q Consensus 316 ------------~~~~~~~~~~~~~~~~~~~~~~~-~~vp~~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~D 382 (460)
.++....+|+++++|.+++..++ +|+||.+||+|+++++|||||||||++||+++|||||++|+++|
T Consensus 308 ~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~~D 387 (481)
T PLN02992 308 CSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAE 387 (481)
T ss_pred ccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCccch
Confidence 00012348999999998777665 99999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHH-HhhceeEeeCC---ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHH
Q 012563 383 QMVNARYVS-HVWRVGLHLEG---KLEKKEIETAIRRLMVEAEGQEMRERITCLKKNVDACLR--QGGSSHQALGRLVDH 456 (460)
Q Consensus 383 Q~~na~~v~-~~lG~G~~~~~---~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~--~~g~~~~~~~~~~~~ 456 (460)
|+.||++++ + +|+|+.++. .++.++|.++|+++|.+++++.+|++++++++..++|+. +||||.++++++++.
T Consensus 388 Q~~na~~~~~~-~g~gv~~~~~~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~~l~~~v~~ 466 (481)
T PLN02992 388 QNMNAALLSDE-LGIAVRSDDPKEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGGGVAHESLCRVTKE 466 (481)
T ss_pred hHHHHHHHHHH-hCeeEEecCCCCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Confidence 999999995 6 799999964 489999999999999876678999999999999999995 599999999999998
Q ss_pred Hhc
Q 012563 457 ILS 459 (460)
Q Consensus 457 ~~~ 459 (460)
+..
T Consensus 467 ~~~ 469 (481)
T PLN02992 467 CQR 469 (481)
T ss_pred HHH
Confidence 864
No 6
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=7.5e-64 Score=494.77 Aligned_cols=425 Identities=30% Similarity=0.511 Sum_probs=327.6
Q ss_pred CCCCcEEEEEcCCCCCChHHHHHHHHH--HHhCCCeEEEEeCCCCCCCCC----CCCCceEEeCCCCCCCCCCCCHHHHH
Q 012563 11 PRNGRRVILFPLPFQGHINPMLQLGSI--LYSKGFSITIIHTKFNSPNSC----NYPHFDFHSISDGLTDPSAEDSTTIL 84 (460)
Q Consensus 11 ~~~~~~il~~~~~~~GHv~p~l~lA~~--L~~rGh~V~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (460)
...+.||+++|+|++||++|++.||++ |++||++|||++++.+..... ....+++..+|++++++.......++
T Consensus 5 ~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~~glp~~~~~~~~~~~ 84 (456)
T PLN02210 5 EGQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEKPRRPVDLVFFSDGLPKDDPRAPETLL 84 (456)
T ss_pred CCCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccCCCCceEEEECCCCCCCCcccCHHHHH
Confidence 345689999999999999999999999 569999999999987654322 12357888788777765433344444
Q ss_pred HHHHHhcchhHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH-HHhhcCCCeEEEeCccHHHHHHHhhcccccccCC
Q 012563 85 ITLNAKCMVPFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH-VADEFKLPTIILQTHSVSGYLGIAAYPFLRDKGY 163 (460)
Q Consensus 85 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~-~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~ 163 (460)
..+.+.+.. .++++++.. +|||||+|.++.|+. +|+++|||.+.+++.++..+..+.++.... ..
T Consensus 85 ~~~~~~~~~----~l~~~l~~~--------~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~--~~ 150 (456)
T PLN02210 85 KSLNKVGAK----NLSKIIEEK--------RYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKT--NS 150 (456)
T ss_pred HHHHHhhhH----HHHHHHhcC--------CCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhcc--CC
Confidence 444434333 334443322 799999999999999 999999999999999998887766532211 11
Q ss_pred CCCCCC-CCCCccCCCCCCCCCCCCCcccCCCCC-cHHHHHHHHhhhccCceEEecchHHhhHHHhhcCccccCCCCcee
Q 012563 164 VPIQDP-QSESPVIEYPPLRVKDIPKLETRYPEY-NYPLVSAMVNNIKASSGMIWNTFEELEQAALSTLPEEYSGIPVFP 241 (460)
Q Consensus 164 ~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~pv~~ 241 (460)
.+.... .....+|+++.++..+++......... +...+.+..+....++++++||+.+||+..++.++.. .|+++
T Consensus 151 ~~~~~~~~~~~~~Pgl~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~---~~v~~ 227 (456)
T PLN02210 151 FPDLEDLNQTVELPALPLLEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMADL---KPVIP 227 (456)
T ss_pred CCcccccCCeeeCCCCCCCChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhhc---CCEEE
Confidence 111110 112346777777778877543222221 1223334445566788999999999999999988764 67999
Q ss_pred ecccccCC---CCCCC-------CccccccchhhhhccCCCCeEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEECC
Q 012563 242 IGPFHKYF---PASSS-------SLLSQDQSSISWLDKQAPKSVIYVSFGSVAAINETEFLEIAWGLANSRVPFLWVVRP 311 (460)
Q Consensus 242 vGpl~~~~---~~~~~-------~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 311 (460)
|||+.+.. ..... ..+..++++.+|+|+++++++|||||||....+.+++.+++.+|+.++++|||+++.
T Consensus 228 VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~ 307 (456)
T PLN02210 228 IGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRP 307 (456)
T ss_pred EcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 99997521 11000 012344568999999888999999999999999999999999999999999999975
Q ss_pred CCCCCchhhccCchhHHhhh-CCCceEEeccchHHHhccCCCcceeeccCchhhHHHHhhCCCeeecCcccchhhHHHHH
Q 012563 312 GLVDGVEWLEALPKGYLEMV-DGRGYIVQWAPQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCLADQMVNARYV 390 (460)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~vp~~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v 390 (460)
... ...++.+.++. ++|+.+++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++
T Consensus 308 ~~~------~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~ 381 (456)
T PLN02210 308 KEK------AQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLL 381 (456)
T ss_pred Ccc------ccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHHH
Confidence 421 11345566665 47888899999999999999999999999999999999999999999999999999999
Q ss_pred HHhhceeEeeCC-----ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 012563 391 SHVWRVGLHLEG-----KLEKKEIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHIL 458 (460)
Q Consensus 391 ~~~lG~G~~~~~-----~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
++.+|+|+.+.. .++.++|+++|+++|.+++++++|+||+++++..++|+++||||.++++++++.+.
T Consensus 382 ~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 382 VDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDIT 454 (456)
T ss_pred HHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 874699999852 58999999999999988667889999999999999999999999999999999875
No 7
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.8e-63 Score=495.49 Aligned_cols=430 Identities=29% Similarity=0.482 Sum_probs=331.4
Q ss_pred ccCCCCCcEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCC---CCCceEEeCCCCCCCCCCC--CH
Q 012563 8 RISPRNGRRVILFPLPFQGHINPMLQLGSILYSK--GFSITIIHTKFNSPNSCN---YPHFDFHSISDGLTDPSAE--DS 80 (460)
Q Consensus 8 ~~~~~~~~~il~~~~~~~GHv~p~l~lA~~L~~r--Gh~V~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~ 80 (460)
..|+.++.||+++|+|++||++|++.||++|++| ||+|||++++.+...... ..+++|+.+|+++++.... +.
T Consensus 4 ~~~~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~~~gi~fv~lp~~~p~~~~~~~~~ 83 (459)
T PLN02448 4 GSSPTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPKPDNIRFATIPNVIPSELVRAADF 83 (459)
T ss_pred CCCCCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCCCCCEEEEECCCCCCCccccccCH
Confidence 3578899999999999999999999999999999 999999999866544332 2479999999766554322 23
Q ss_pred HHHHHHHHHhcchhHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH-HHhhcCCCeEEEeCccHHHHHHHhhccccc
Q 012563 81 TTILITLNAKCMVPFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH-VADEFKLPTIILQTHSVSGYLGIAAYPFLR 159 (460)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~-~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 159 (460)
..++..+...+...+.+.++++. . ++||||+|.++.|+. +|+++|||+|.+++.++...+.+.+++...
T Consensus 84 ~~~~~~~~~~~~~~~~~~l~~~~----~------~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~ 153 (459)
T PLN02448 84 PGFLEAVMTKMEAPFEQLLDRLE----P------PVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLP 153 (459)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcC----C------CcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhh
Confidence 33444333334444555555442 2 689999999999999 999999999999999997777665544322
Q ss_pred ccCCCCCCCC----CCCCccCCCCCCCCCCCCCcccCCCCCcHHHHHHHHhhhccCceEEecchHHhhHHHhhcCccccC
Q 012563 160 DKGYVPIQDP----QSESPVIEYPPLRVKDIPKLETRYPEYNYPLVSAMVNNIKASSGMIWNTFEELEQAALSTLPEEYS 235 (460)
Q Consensus 160 ~~~~~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~ 235 (460)
.....|.... .....+|+++.++..+++.............+.+......+++.+++||+.+||+..++.++.. +
T Consensus 154 ~~~~~~~~~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~-~ 232 (459)
T PLN02448 154 QNGHFPVELSESGEERVDYIPGLSSTRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSK-F 232 (459)
T ss_pred hccCCCCccccccCCccccCCCCCCCChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhh-c
Confidence 2111121110 1011367777777777775432222222334445555566778999999999999999998776 6
Q ss_pred CCCceeecccccCCCCC--CCC-cc-ccccchhhhhccCCCCeEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEECC
Q 012563 236 GIPVFPIGPFHKYFPAS--SSS-LL-SQDQSSISWLDKQAPKSVIYVSFGSVAAINETEFLEIAWGLANSRVPFLWVVRP 311 (460)
Q Consensus 236 ~~pv~~vGpl~~~~~~~--~~~-~~-~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 311 (460)
+.|++.|||+....... ... .. ..+.++.+|++.++++++|||||||....+.+++.+++.+|+.++++|||+++.
T Consensus 233 ~~~~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~ 312 (459)
T PLN02448 233 PFPVYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARG 312 (459)
T ss_pred CCceEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 66899999997632110 000 01 112358899999888999999999998888999999999999999999998764
Q ss_pred CCCCCchhhccCchhHHhhhCCCceEEeccchHHHhccCCCcceeeccCchhhHHHHhhCCCeeecCcccchhhHHHHHH
Q 012563 312 GLVDGVEWLEALPKGYLEMVDGRGYIVQWAPQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCLADQMVNARYVS 391 (460)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~ 391 (460)
.. ..+.++.++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||++++
T Consensus 313 ~~-----------~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~ 381 (459)
T PLN02448 313 EA-----------SRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIV 381 (459)
T ss_pred ch-----------hhHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHH
Confidence 31 2344445567888999999999999999999999999999999999999999999999999999998
Q ss_pred HhhceeEeeCC------ccCHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 012563 392 HVWRVGLHLEG------KLEKKEIETAIRRLMVEA--EGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHILS 459 (460)
Q Consensus 392 ~~lG~G~~~~~------~~~~~~l~~~i~~ll~~~--~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
+.||+|+.+.. .+++++|+++|+++|.++ +++++|+||+++++.+++|+.+||||+++++++++.+..
T Consensus 382 ~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~~ 457 (459)
T PLN02448 382 EDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQ 457 (459)
T ss_pred HHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 85788888842 479999999999999863 478999999999999999999999999999999998863
No 8
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=1.3e-62 Score=483.45 Aligned_cols=437 Identities=25% Similarity=0.442 Sum_probs=331.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCC--CeEEEEeCCCCCC-C----C----CCCCCceEEeCCCCCC--C-CCCC
Q 012563 13 NGRRVILFPLPFQGHINPMLQLGSILYSKG--FSITIIHTKFNSP-N----S----CNYPHFDFHSISDGLT--D-PSAE 78 (460)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~lA~~L~~rG--h~V~~~~~~~~~~-~----~----~~~~~~~~~~~~~~~~--~-~~~~ 78 (460)
++.||+++|+|++||++|++.||+.|+.+| ..|||++++.+.. . . ...++++|..+|+... . +...
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~ 81 (468)
T PLN02207 2 RNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGGTQ 81 (468)
T ss_pred CCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCcccccc
Confidence 457999999999999999999999999998 9999999986541 0 1 1123699999995332 1 1111
Q ss_pred CHHHHHHHHHHhcchhHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH-HHhhcCCCeEEEeCccHHHHHHHhhccc
Q 012563 79 DSTTILITLNAKCMVPFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH-VADEFKLPTIILQTHSVSGYLGIAAYPF 157 (460)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~-~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 157 (460)
+....+..+...+...+++.+.++...... +.++++|||+|.+++|+. +|+++|||++.++++++...+.+.+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~ 158 (468)
T PLN02207 82 SVEAYVYDVIEKNIPLVRNIVMDILSSLAL---DGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLAD 158 (468)
T ss_pred CHHHHHHHHHHhcchhHHHHHHHHHHHhcc---CCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhh
Confidence 233333334345545455555555432100 000359999999999999 9999999999999999988877765443
Q ss_pred ccccC-CCCCCCCCCCCccCCC-CCCCCCCCCCcccCCCCCcHHHHHHHHhhhccCceEEecchHHhhHHHhhcCccccC
Q 012563 158 LRDKG-YVPIQDPQSESPVIEY-PPLRVKDIPKLETRYPEYNYPLVSAMVNNIKASSGMIWNTFEELEQAALSTLPEEYS 235 (460)
Q Consensus 158 ~~~~~-~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~ 235 (460)
..... ..+....+....+|++ +.++..+++.... .... ...+.+......+++++++||+++||++.++.++....
T Consensus 159 ~~~~~~~~~~~~~~~~~~vPgl~~~l~~~dlp~~~~-~~~~-~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~~~~~~ 236 (468)
T PLN02207 159 RHSKDTSVFVRNSEEMLSIPGFVNPVPANVLPSALF-VEDG-YDAYVKLAILFTKANGILVNSSFDIEPYSVNHFLDEQN 236 (468)
T ss_pred ccccccccCcCCCCCeEECCCCCCCCChHHCcchhc-CCcc-HHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHHhccC
Confidence 21111 0111011122357888 5788888886442 2222 44445555667889999999999999998887743101
Q ss_pred CCCceeecccccCCCCCCC-CccccccchhhhhccCCCCeEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEECCCCC
Q 012563 236 GIPVFPIGPFHKYFPASSS-SLLSQDQSSISWLDKQAPKSVIYVSFGSVAAINETEFLEIAWGLANSRVPFLWVVRPGLV 314 (460)
Q Consensus 236 ~~pv~~vGpl~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~ 314 (460)
.++++.|||++........ .....++++.+|||+++++++|||||||...++.+++.+++.+|+.++++|||+++....
T Consensus 237 ~p~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~~~~ 316 (468)
T PLN02207 237 YPSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRTEEV 316 (468)
T ss_pred CCcEEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeCCCc
Confidence 2459999999864322110 001123569999999988999999999999999999999999999999999999985321
Q ss_pred CCchhhccCchhHHhhhCCCceEEeccchHHHhccCCCcceeeccCchhhHHHHhhCCCeeecCcccchhhHHHHHHHhh
Q 012563 315 DGVEWLEALPKGYLEMVDGRGYIVQWAPQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCLADQMVNARYVSHVW 394 (460)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~l 394 (460)
.. .+.+|++++++.++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.+
T Consensus 317 ~~---~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~ 393 (468)
T PLN02207 317 TN---DDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKEL 393 (468)
T ss_pred cc---cccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchhhHHHHHHHh
Confidence 11 134889999999999999999999999999999999999999999999999999999999999999999877657
Q ss_pred ceeEeeC------C--ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 012563 395 RVGLHLE------G--KLEKKEIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHIL 458 (460)
Q Consensus 395 G~G~~~~------~--~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
|+|+.+. . .++.++|.++|+++|.+ ++++||+||+++++.+++|+.+||||+++++++++.+.
T Consensus 394 gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~-~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~~~~ 464 (468)
T PLN02207 394 KLAVELKLDYRVHSDEIVNANEIETAIRCVMNK-DNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFIHDVI 464 (468)
T ss_pred CceEEEecccccccCCcccHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 9999662 1 35999999999999972 24899999999999999999999999999999999875
No 9
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=7.2e-63 Score=489.17 Aligned_cols=440 Identities=25% Similarity=0.395 Sum_probs=326.7
Q ss_pred CCCCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC----CCCCceEEeCC----CCCCCCCCCC--
Q 012563 10 SPRNGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNSPNSC----NYPHFDFHSIS----DGLTDPSAED-- 79 (460)
Q Consensus 10 ~~~~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~~~----~~~~~~~~~~~----~~~~~~~~~~-- 79 (460)
....+.||+++|+|++||++|++.||+.|+.+|+.|||++|+.+..... ..+++++..+| ++++++.+..
T Consensus 5 ~~~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~~~~i~~~~lp~P~~~~lPdG~~~~~~ 84 (477)
T PLN02863 5 NKPAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSKHPSIETLVLPFPSHPSIPSGVENVKD 84 (477)
T ss_pred ccCCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcccCCCeeEEeCCCCCcCCCCCCCcChhh
Confidence 3456799999999999999999999999999999999999987764322 12357776654 2444443332
Q ss_pred -HHHHHHHHHHhcchhHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH-HHhhcCCCeEEEeCccHHHHHHHhhccc
Q 012563 80 -STTILITLNAKCMVPFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH-VADEFKLPTIILQTHSVSGYLGIAAYPF 157 (460)
Q Consensus 80 -~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~-~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 157 (460)
....+..+...+.. +...+.+++..... +|+|||+|.+.+|+. +|+++|||++.+++.++...+.+.++..
T Consensus 85 ~~~~~~~~~~~a~~~-~~~~~~~~l~~~~~------~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~ 157 (477)
T PLN02863 85 LPPSGFPLMIHALGE-LYAPLLSWFRSHPS------PPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWR 157 (477)
T ss_pred cchhhHHHHHHHHHH-hHHHHHHHHHhCCC------CCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhh
Confidence 11222223222222 22222223322122 689999999999999 9999999999999999999888876432
Q ss_pred ccccCCCCCCCC-CC-CCccCCCCCCCCCCCCCcccC--CCCCcHHHHHHHHhhhccCceEEecchHHhhHHHhhcCccc
Q 012563 158 LRDKGYVPIQDP-QS-ESPVIEYPPLRVKDIPKLETR--YPEYNYPLVSAMVNNIKASSGMIWNTFEELEQAALSTLPEE 233 (460)
Q Consensus 158 ~~~~~~~p~~~~-~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~ 233 (460)
..+....+.... .. ...+|+++.++..+++..... ........+.+.......++++++|||.+||+..++.++..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~ 237 (477)
T PLN02863 158 EMPTKINPDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKKE 237 (477)
T ss_pred cccccccccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHhh
Confidence 211100000000 01 123678878888888754321 11222333334444456677899999999999999999876
Q ss_pred cCC-CCceeecccccCCCCC------CCCccccccchhhhhccCCCCeEEEEEecccccCCHHHHHHHHHHHHhCCCCEE
Q 012563 234 YSG-IPVFPIGPFHKYFPAS------SSSLLSQDQSSISWLDKQAPKSVIYVSFGSVAAINETEFLEIAWGLANSRVPFL 306 (460)
Q Consensus 234 ~~~-~pv~~vGpl~~~~~~~------~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i 306 (460)
++ +|++.|||+....... +......++++.+|||.++++++|||||||....+.+++.+++.+|+.++++||
T Consensus 238 -~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~fl 316 (477)
T PLN02863 238 -LGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFI 316 (477)
T ss_pred -cCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEE
Confidence 55 5799999997533110 000011234689999999889999999999999999999999999999999999
Q ss_pred EEECCCCCCCchhhccCchhHHhhhCCCce-EEeccchHHHhccCCCcceeeccCchhhHHHHhhCCCeeecCcccchhh
Q 012563 307 WVVRPGLVDGVEWLEALPKGYLEMVDGRGY-IVQWAPQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCLADQMV 385 (460)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vp~~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~DQ~~ 385 (460)
|+++...... .....+|+++.++..++.. +..|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.
T Consensus 317 w~~~~~~~~~-~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~ 395 (477)
T PLN02863 317 WCVKEPVNEE-SDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFV 395 (477)
T ss_pred EEECCCcccc-cchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchh
Confidence 9998542111 0123588999888765554 4599999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhceeEeeCC----ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC
Q 012563 386 NARYVSHVWRVGLHLEG----KLEKKEIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHILSF 460 (460)
Q Consensus 386 na~~v~~~lG~G~~~~~----~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 460 (460)
||+++.+.||+|+.+.. ..+.+++.++|++++.+ +++||+||+++++..++|+.+||||+++++++++.+.++
T Consensus 396 na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~--~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~~~ 472 (477)
T PLN02863 396 NASLLVDELKVAVRVCEGADTVPDSDELARVFMESVSE--NQVERERAKELRRAALDAIKERGSSVKDLDGFVKHVVEL 472 (477)
T ss_pred hHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHh
Confidence 99997654899999842 36899999999999942 289999999999999999999999999999999998763
No 10
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=1.1e-62 Score=489.51 Aligned_cols=435 Identities=30% Similarity=0.463 Sum_probs=332.6
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCC----CeEEEEeCCCCCC----CC-------C-CCCCceEEeCCCCCCCCC
Q 012563 13 NGRRVILFPLPFQGHINPMLQLGSILYSKG----FSITIIHTKFNSP----NS-------C-NYPHFDFHSISDGLTDPS 76 (460)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~lA~~L~~rG----h~V~~~~~~~~~~----~~-------~-~~~~~~~~~~~~~~~~~~ 76 (460)
.|.||+++|+|++||++|++.||+.|+.+| +.|||++++.+.. .. . ...++++..+|++..+..
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~ 81 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPTD 81 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCCc
Confidence 467999999999999999999999999997 7999999875432 00 0 012589999996543221
Q ss_pred CCCHHHHHHHHHHhcchhHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH-HHhhcCCCeEEEeCccHHHHHHHhhc
Q 012563 77 AEDSTTILITLNAKCMVPFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH-VADEFKLPTIILQTHSVSGYLGIAAY 155 (460)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~-~A~~lgiP~v~~~~~~~~~~~~~~~~ 155 (460)
..+...++..+...+...+++.++.+ .+ +++|||+|.++.|+. +|+++|||++.++++++...+.+.+.
T Consensus 82 ~e~~~~~~~~~~~~~~~~l~~~L~~l----~~------pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~ 151 (480)
T PLN00164 82 AAGVEEFISRYIQLHAPHVRAAIAGL----SC------PVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRL 151 (480)
T ss_pred cccHHHHHHHHHHhhhHHHHHHHHhc----CC------CceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhh
Confidence 11233444444445555555555444 21 569999999999999 99999999999999999988887765
Q ss_pred ccccccCCCCCCCCCCCCccCCCCCCCCCCCCCcccCCCCCcHHHHHHHHhhhccCceEEecchHHhhHHHhhcCccccC
Q 012563 156 PFLRDKGYVPIQDPQSESPVIEYPPLRVKDIPKLETRYPEYNYPLVSAMVNNIKASSGMIWNTFEELEQAALSTLPEEYS 235 (460)
Q Consensus 156 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~ 235 (460)
+........+.........+|+++.++..+++.......+.....+....+.+.+++++++|||.+||+..++.++....
T Consensus 152 ~~~~~~~~~~~~~~~~~~~iPGlp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~ 231 (480)
T PLN00164 152 PALDEEVAVEFEEMEGAVDVPGLPPVPASSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIADGRC 231 (480)
T ss_pred hhhcccccCcccccCcceecCCCCCCChHHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHhccc
Confidence 43211110011110112247888888888888544222222234444445667788999999999999999988866310
Q ss_pred -----CCCceeecccccCCCCCCCCccccccchhhhhccCCCCeEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEC
Q 012563 236 -----GIPVFPIGPFHKYFPASSSSLLSQDQSSISWLDKQAPKSVIYVSFGSVAAINETEFLEIAWGLANSRVPFLWVVR 310 (460)
Q Consensus 236 -----~~pv~~vGpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~ 310 (460)
.+|++.|||+....... .....++++.+|||+++.++||||||||...++.+++.+++.+|+.++++|||+++
T Consensus 232 ~~~~~~~~v~~vGPl~~~~~~~--~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~ 309 (480)
T PLN00164 232 TPGRPAPTVYPIGPVISLAFTP--PAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLR 309 (480)
T ss_pred cccCCCCceEEeCCCccccccC--CCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 13699999997432210 11234556999999998999999999999888999999999999999999999998
Q ss_pred CCCCC------CchhhccCchhHHhhhCCCceEE-eccchHHHhccCCCcceeeccCchhhHHHHhhCCCeeecCcccch
Q 012563 311 PGLVD------GVEWLEALPKGYLEMVDGRGYIV-QWAPQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCLADQ 383 (460)
Q Consensus 311 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~vp~~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~DQ 383 (460)
..... +.+....+|+++.++..+++.++ .|+||.+||+|+++++|||||||||++||+++|||||++|+++||
T Consensus 310 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~~DQ 389 (480)
T PLN00164 310 GPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAEQ 389 (480)
T ss_pred CCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCccccc
Confidence 54210 00111248899999998888877 999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhceeEeeCC------ccCHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 012563 384 MVNARYVSHVWRVGLHLEG------KLEKKEIETAIRRLMVEA--EGQEMRERITCLKKNVDACLRQGGSSHQALGRLVD 455 (460)
Q Consensus 384 ~~na~~v~~~lG~G~~~~~------~~~~~~l~~~i~~ll~~~--~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 455 (460)
+.||+++.+.+|+|+.+.. .++.++|.++|+++|.++ +++.+|++|+++++.+++|+++||||+++++++++
T Consensus 390 ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~~l~~~v~ 469 (480)
T PLN00164 390 HLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSYAALQRLAR 469 (480)
T ss_pred hhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 9999887544799999842 368999999999999764 36889999999999999999999999999999999
Q ss_pred HHhc
Q 012563 456 HILS 459 (460)
Q Consensus 456 ~~~~ 459 (460)
.+.+
T Consensus 470 ~~~~ 473 (480)
T PLN00164 470 EIRH 473 (480)
T ss_pred HHHh
Confidence 8864
No 11
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=7.5e-63 Score=485.57 Aligned_cols=431 Identities=25% Similarity=0.384 Sum_probs=322.5
Q ss_pred CCCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC-----CCCCceEEeCC----CCCCCCCCCC--
Q 012563 11 PRNGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNSPNSC-----NYPHFDFHSIS----DGLTDPSAED-- 79 (460)
Q Consensus 11 ~~~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~~~-----~~~~~~~~~~~----~~~~~~~~~~-- 79 (460)
...+.||+++|+|++||++|++.||+.|+.||+.|||++++.+..... ...+++++.+| ++++++.+..
T Consensus 3 ~~~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p~~dglp~~~~~~~~ 82 (472)
T PLN02670 3 REEVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLPSVPGLPSSAESSTD 82 (472)
T ss_pred CCCCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCCccCCCCCCcccccc
Confidence 345679999999999999999999999999999999999987653322 11358899888 5676543322
Q ss_pred HH----HHHHHHHHhcchhHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH-HHhhcCCCeEEEeCccHHHHHHHhh
Q 012563 80 ST----TILITLNAKCMVPFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH-VADEFKLPTIILQTHSVSGYLGIAA 154 (460)
Q Consensus 80 ~~----~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~-~A~~lgiP~v~~~~~~~~~~~~~~~ 154 (460)
.. .++....+. ++..+++++... +++|||+|.++.|+. +|+++|||++.+++.++...+.+.+
T Consensus 83 ~~~~~~~~~~~~~~~----~~~~~~~~l~~~--------~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~ 150 (472)
T PLN02670 83 VPYTKQQLLKKAFDL----LEPPLTTFLETS--------KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGP 150 (472)
T ss_pred cchhhHHHHHHHHHH----hHHHHHHHHHhC--------CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhh
Confidence 11 122233333 344444444332 689999999999999 9999999999999999888777643
Q ss_pred cccccccCCCCCCCCCCCCccCCCC------CCCCCCCCCcccCC--CCCcHHHHHHHHhhhccCceEEecchHHhhHHH
Q 012563 155 YPFLRDKGYVPIQDPQSESPVIEYP------PLRVKDIPKLETRY--PEYNYPLVSAMVNNIKASSGMIWNTFEELEQAA 226 (460)
Q Consensus 155 ~~~~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~ 226 (460)
..........+...... ..+++.. .++..+++...... .......+.+......+++++++|||.+||+..
T Consensus 151 ~~~~~~~~~~~~~~~~~-~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~ 229 (472)
T PLN02670 151 PSSLMEGGDLRSTAEDF-TVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEW 229 (472)
T ss_pred hHhhhhcccCCCccccc-cCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHH
Confidence 22111111111111110 1133321 13334555332111 111223333444456778899999999999999
Q ss_pred hhcCccccCCCCceeecccccCCCC-CCCCcc--ccccchhhhhccCCCCeEEEEEecccccCCHHHHHHHHHHHHhCCC
Q 012563 227 LSTLPEEYSGIPVFPIGPFHKYFPA-SSSSLL--SQDQSSISWLDKQAPKSVIYVSFGSVAAINETEFLEIAWGLANSRV 303 (460)
Q Consensus 227 ~~~~~~~~~~~pv~~vGpl~~~~~~-~~~~~~--~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~ 303 (460)
++.++.. +++|++.|||+...... ...... ..++++.+|||++++++||||||||...++.+++.+++.+|+.+++
T Consensus 230 l~~l~~~-~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~ 308 (472)
T PLN02670 230 FDLLSDL-YRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSET 308 (472)
T ss_pred HHHHHHh-hCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCC
Confidence 9999875 55789999999753111 000000 1124589999999889999999999999999999999999999999
Q ss_pred CEEEEECCCCCCCchhhccCchhHHhhhCCCceEE-eccchHHHhccCCCcceeeccCchhhHHHHhhCCCeeecCcccc
Q 012563 304 PFLWVVRPGLVDGVEWLEALPKGYLEMVDGRGYIV-QWAPQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCLAD 382 (460)
Q Consensus 304 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vp~~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~D 382 (460)
+|||+++.......+....+|+++.++.++++.++ +|+||.+||+|+++++|||||||||++||+++|||||++|+++|
T Consensus 309 ~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~D 388 (472)
T PLN02670 309 PFFWVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNE 388 (472)
T ss_pred CEEEEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhc
Confidence 99999985321111112358999999999888875 99999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhhceeEeeCC-----ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012563 383 QMVNARYVSHVWRVGLHLEG-----KLEKKEIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHI 457 (460)
Q Consensus 383 Q~~na~~v~~~lG~G~~~~~-----~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (460)
|+.||+++++ +|+|+.+.. .++.++|.++|+++|.+++|++||+||+++++.++ +.++..++++++++.+
T Consensus 389 Q~~Na~~v~~-~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~----~~~~~~~~~~~~~~~l 463 (472)
T PLN02670 389 QGLNTRLLHG-KKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFG----DMDRNNRYVDELVHYL 463 (472)
T ss_pred cHHHHHHHHH-cCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHh----CcchhHHHHHHHHHHH
Confidence 9999999998 799999953 38999999999999988666799999999999999 7899999999999998
Q ss_pred hcC
Q 012563 458 LSF 460 (460)
Q Consensus 458 ~~~ 460 (460)
.++
T Consensus 464 ~~~ 466 (472)
T PLN02670 464 REN 466 (472)
T ss_pred HHh
Confidence 763
No 12
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=2.9e-62 Score=480.02 Aligned_cols=422 Identities=28% Similarity=0.467 Sum_probs=330.8
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHh-CCCeEEEEeCCCCC-CC-C---CCCCCceEEeCCCCCCCCCCC---CHHHHH
Q 012563 14 GRRVILFPLPFQGHINPMLQLGSILYS-KGFSITIIHTKFNS-PN-S---CNYPHFDFHSISDGLTDPSAE---DSTTIL 84 (460)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~lA~~L~~-rGh~V~~~~~~~~~-~~-~---~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 84 (460)
+.||+++|+|++||++|++.||+.|+. +|+.|||++++.+. .. . ...++++|+.++++++++.+. ....++
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~~~~~~i~~~~i~dglp~g~~~~~~~~~~~~ 82 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNHNNVENLSFLTFSDGFDDGVISNTDDVQNRL 82 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccCCCCCCEEEEEcCCCCCCccccccccHHHHH
Confidence 459999999999999999999999996 69999999997542 11 1 112369999999888765322 244455
Q ss_pred HHHHHhcchhHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH-HHhhcCCCeEEEeCccHHHHHHHhhcccccccCC
Q 012563 85 ITLNAKCMVPFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH-VADEFKLPTIILQTHSVSGYLGIAAYPFLRDKGY 163 (460)
Q Consensus 85 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~-~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~ 163 (460)
..+...+...+.+.++++.... + +++|||+|.+++|+. +|+++|||++.++++++...+.++++....
T Consensus 83 ~~~~~~~~~~l~~~l~~l~~~~-~------pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~---- 151 (455)
T PLN02152 83 VNFERNGDKALSDFIEANLNGD-S------PVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN---- 151 (455)
T ss_pred HHHHHhccHHHHHHHHHhhccC-C------CceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccC----
Confidence 6666677777888777764321 1 569999999999999 999999999999999999888876543210
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCCcccCC--CCCcHHHHHHHHhhhcc--CceEEecchHHhhHHHhhcCccccCCCCc
Q 012563 164 VPIQDPQSESPVIEYPPLRVKDIPKLETRY--PEYNYPLVSAMVNNIKA--SSGMIWNTFEELEQAALSTLPEEYSGIPV 239 (460)
Q Consensus 164 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~l~~s~~~le~~~~~~~~~~~~~~pv 239 (460)
.....+|+++.++.++++.+.... .......+.+..+.... ++++++|||++||+..++.++. .|+
T Consensus 152 ------~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~----~~v 221 (455)
T PLN02152 152 ------NSVFEFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN----IEM 221 (455)
T ss_pred ------CCeeecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc----CCE
Confidence 112347888878888888644211 12223444444444432 4689999999999999998864 479
Q ss_pred eeecccccCCC--CCC--C-Cc-cccccchhhhhccCCCCeEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEECCCC
Q 012563 240 FPIGPFHKYFP--ASS--S-SL-LSQDQSSISWLDKQAPKSVIYVSFGSVAAINETEFLEIAWGLANSRVPFLWVVRPGL 313 (460)
Q Consensus 240 ~~vGpl~~~~~--~~~--~-~~-~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~ 313 (460)
+.|||+.+... ... . .. ...+.++.+|||+++.++||||||||...++.+++.+++.+|+.++.+|||+++...
T Consensus 222 ~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~ 301 (455)
T PLN02152 222 VAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKL 301 (455)
T ss_pred EEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence 99999975321 100 0 01 122346999999998899999999999999999999999999999999999998532
Q ss_pred CC-----Cc-hhhccCchhHHhhhCCCceEEeccchHHHhccCCCcceeeccCchhhHHHHhhCCCeeecCcccchhhHH
Q 012563 314 VD-----GV-EWLEALPKGYLEMVDGRGYIVQWAPQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCLADQMVNA 387 (460)
Q Consensus 314 ~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~vp~~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~DQ~~na 387 (460)
.. .. +....+|+++.++.++|+++++|+||.+||+|+++++|||||||||++||+++|||+|++|+++||+.||
T Consensus 302 ~~~~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na 381 (455)
T PLN02152 302 NREAKIEGEEETEIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANA 381 (455)
T ss_pred ccccccccccccccccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchHHH
Confidence 10 00 0011357899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhceeEeeC--C--ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012563 388 RYVSHVWRVGLHLE--G--KLEKKEIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHI 457 (460)
Q Consensus 388 ~~v~~~lG~G~~~~--~--~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (460)
+++++.||+|+.+. . .++.++|+++|+++|++ ++..||+||+++++..++++.+||||+++++++++.+
T Consensus 382 ~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~-~~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~i 454 (455)
T PLN02152 382 KLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEE-KSVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKTL 454 (455)
T ss_pred HHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 99998557777763 2 46999999999999975 2457999999999999999999999999999999986
No 13
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=2.9e-62 Score=483.65 Aligned_cols=438 Identities=26% Similarity=0.466 Sum_probs=323.2
Q ss_pred CCCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC------C--CCceEEeCC-----CCCCCCCC
Q 012563 11 PRNGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNSPNSCN------Y--PHFDFHSIS-----DGLTDPSA 77 (460)
Q Consensus 11 ~~~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~~~~------~--~~~~~~~~~-----~~~~~~~~ 77 (460)
-.++.||+++|+|++||++|++.||+.|+.+|+.|||++++.+...... . ..++|+.+| ++++++.+
T Consensus 5 ~~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~ 84 (491)
T PLN02534 5 KAKQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCE 84 (491)
T ss_pred cCCCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCcc
Confidence 3456899999999999999999999999999999999999876532211 1 138898887 57776543
Q ss_pred CC----HHHHHHHHHHhcchhHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH-HHhhcCCCeEEEeCccHHHHHHH
Q 012563 78 ED----STTILITLNAKCMVPFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH-VADEFKLPTIILQTHSVSGYLGI 152 (460)
Q Consensus 78 ~~----~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~-~A~~lgiP~v~~~~~~~~~~~~~ 152 (460)
.. ...++..+..... .+...+++++..... +|+|||+|.++.|+. +|+++|||++.+++.+++..+.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~-~l~~~l~~lL~~~~~------pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~ 157 (491)
T PLN02534 85 NLDTLPSRDLLRKFYDAVD-KLQQPLERFLEQAKP------PPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSS 157 (491)
T ss_pred ccccCCcHHHHHHHHHHHH-HhHHHHHHHHHhcCC------CCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHH
Confidence 22 1123333322222 244455555443222 689999999999999 99999999999999999877654
Q ss_pred hhcccccccCCCCCCCCCCCCccCCCCC---CCCCCCCCcccCCCCCcHHHHHHHHhhhccCceEEecchHHhhHHHhhc
Q 012563 153 AAYPFLRDKGYVPIQDPQSESPVIEYPP---LRVKDIPKLETRYPEYNYPLVSAMVNNIKASSGMIWNTFEELEQAALST 229 (460)
Q Consensus 153 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~ 229 (460)
..+....+ ..+.........+|+++. ++..+++..... ......+...+.+....++++++|||.+||+..++.
T Consensus 158 ~~~~~~~~--~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~-~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~ 234 (491)
T PLN02534 158 HNIRLHNA--HLSVSSDSEPFVVPGMPQSIEITRAQLPGAFVS-LPDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEA 234 (491)
T ss_pred HHHHHhcc--cccCCCCCceeecCCCCccccccHHHCChhhcC-cccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHH
Confidence 33211111 111111112234677653 566666643211 111222222233333456789999999999999999
Q ss_pred CccccCCCCceeecccccCCCCC------CCCccccccchhhhhccCCCCeEEEEEecccccCCHHHHHHHHHHHHhCCC
Q 012563 230 LPEEYSGIPVFPIGPFHKYFPAS------SSSLLSQDQSSISWLDKQAPKSVIYVSFGSVAAINETEFLEIAWGLANSRV 303 (460)
Q Consensus 230 ~~~~~~~~pv~~vGpl~~~~~~~------~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~ 303 (460)
++.. +++|++.|||+....... ......+++++.+|||++++++||||||||.....++++.+++.+|+.++.
T Consensus 235 l~~~-~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~ 313 (491)
T PLN02534 235 YEKA-IKKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKK 313 (491)
T ss_pred HHhh-cCCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCC
Confidence 8876 667899999997532110 000001234589999999889999999999999999999999999999999
Q ss_pred CEEEEECCCCCCCchhhccCchhHHhhhCC-CceEEeccchHHHhccCCCcceeeccCchhhHHHHhhCCCeeecCcccc
Q 012563 304 PFLWVVRPGLVDGVEWLEALPKGYLEMVDG-RGYIVQWAPQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCLAD 382 (460)
Q Consensus 304 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vp~~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~D 382 (460)
+|+|+++.........-..+|+++.++..+ ++++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++|
T Consensus 314 ~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~d 393 (491)
T PLN02534 314 PFIWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAE 393 (491)
T ss_pred CEEEEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEecccccc
Confidence 999999843211100001367899888654 4455699999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhhceeEeeC-------------C-ccCHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHHhcCCCh
Q 012563 383 QMVNARYVSHVWRVGLHLE-------------G-KLEKKEIETAIRRLMV--EAEGQEMRERITCLKKNVDACLRQGGSS 446 (460)
Q Consensus 383 Q~~na~~v~~~lG~G~~~~-------------~-~~~~~~l~~~i~~ll~--~~~~~~~~~~a~~l~~~~~~~~~~~g~~ 446 (460)
|+.||+++++.||+|+.+. . .++.++|+++|+++|. +++++++|+||+++++.+++|+.+||||
T Consensus 394 q~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GGSS 473 (491)
T PLN02534 394 QFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGGSS 473 (491)
T ss_pred HHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 9999999987689999873 1 2789999999999997 3457899999999999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 012563 447 HQALGRLVDHILS 459 (460)
Q Consensus 447 ~~~~~~~~~~~~~ 459 (460)
.+++++|++.+.+
T Consensus 474 ~~nl~~fv~~i~~ 486 (491)
T PLN02534 474 HINLSILIQDVLK 486 (491)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999864
No 14
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=4.4e-62 Score=477.67 Aligned_cols=429 Identities=26% Similarity=0.441 Sum_probs=327.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEeCCCCCCCC------CC---CCCceEEeCCCCCCCCC-C--CC
Q 012563 13 NGRRVILFPLPFQGHINPMLQLGSILYSK-GFSITIIHTKFNSPNS------CN---YPHFDFHSISDGLTDPS-A--ED 79 (460)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~lA~~L~~r-Gh~V~~~~~~~~~~~~------~~---~~~~~~~~~~~~~~~~~-~--~~ 79 (460)
++.||+++|+|++||++|++.||+.|+.+ |..|||+++..+.... .. .+++++..+|....++. . .+
T Consensus 2 ~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~~~ 81 (470)
T PLN03015 2 DQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPDAT 81 (470)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCCcc
Confidence 46699999999999999999999999987 9999999886543211 11 12588998984322211 1 12
Q ss_pred HHHHHHHHHHhcchhHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH-HHhhcCCC-eEEEeCccHHHHHHHhhccc
Q 012563 80 STTILITLNAKCMVPFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH-VADEFKLP-TIILQTHSVSGYLGIAAYPF 157 (460)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~-~A~~lgiP-~v~~~~~~~~~~~~~~~~~~ 157 (460)
....+......+...+.+.++++. . +++|||+|.++.|+. +|+++||| .+.+++++++..+.+++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~l~----~------~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~ 151 (470)
T PLN03015 82 IFTKMVVKMRAMKPAVRDAVKSMK----R------KPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPV 151 (470)
T ss_pred HHHHHHHHHHhchHHHHHHHHhcC----C------CCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhh
Confidence 222333333455555666665542 1 679999999999999 99999999 58888888877766655443
Q ss_pred ccccCCCCCCCCCCCCccCCCCCCCCCCCCCcccCCCCCcHHHHHHHHhhhccCceEEecchHHhhHHHhhcCccccC--
Q 012563 158 LRDKGYVPIQDPQSESPVIEYPPLRVKDIPKLETRYPEYNYPLVSAMVNNIKASSGMIWNTFEELEQAALSTLPEEYS-- 235 (460)
Q Consensus 158 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~-- 235 (460)
.................+|+++.++..+++.............+.+..+...+++++++|||.+||+..++.++.. +
T Consensus 152 ~~~~~~~~~~~~~~~~~vPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~-~~~ 230 (470)
T PLN03015 152 LDTVVEGEYVDIKEPLKIPGCKPVGPKELMETMLDRSDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALRED-MEL 230 (470)
T ss_pred hhcccccccCCCCCeeeCCCCCCCChHHCCHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhh-ccc
Confidence 2111000000101123478888888888885432222222333334445578899999999999999999888763 2
Q ss_pred ----CCCceeecccccCCCCCCCCccccccchhhhhccCCCCeEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEECC
Q 012563 236 ----GIPVFPIGPFHKYFPASSSSLLSQDQSSISWLDKQAPKSVIYVSFGSVAAINETEFLEIAWGLANSRVPFLWVVRP 311 (460)
Q Consensus 236 ----~~pv~~vGpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 311 (460)
..|++.|||+...... ...++++.+|||+++.++||||||||...++.+++.+++.+|+.++++|||+++.
T Consensus 231 ~~~~~~~v~~VGPl~~~~~~-----~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~ 305 (470)
T PLN03015 231 NRVMKVPVYPIGPIVRTNVH-----VEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRR 305 (470)
T ss_pred ccccCCceEEecCCCCCccc-----ccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEec
Confidence 2569999999742111 1123469999999989999999999999999999999999999999999999974
Q ss_pred CCC-------CCchhhccCchhHHhhhCCCceEE-eccchHHHhccCCCcceeeccCchhhHHHHhhCCCeeecCcccch
Q 012563 312 GLV-------DGVEWLEALPKGYLEMVDGRGYIV-QWAPQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCLADQ 383 (460)
Q Consensus 312 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-~~vp~~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~DQ 383 (460)
... +.++....+|+++.+|.++++.++ +|+||.+||+|+++++|||||||||++||+++|||||++|+++||
T Consensus 306 ~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ 385 (470)
T PLN03015 306 PASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQ 385 (470)
T ss_pred CccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccch
Confidence 211 000112358999999999888665 999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhceeEeeC----C-ccCHHHHHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 012563 384 MVNARYVSHVWRVGLHLE----G-KLEKKEIETAIRRLMVE--AEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDH 456 (460)
Q Consensus 384 ~~na~~v~~~lG~G~~~~----~-~~~~~~l~~~i~~ll~~--~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 456 (460)
+.||+++++.+|+|+.+. . .++.+++.++|+++|.+ ++++.+|+||++++++.++|+++||||.++++++++.
T Consensus 386 ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~~~~ 465 (470)
T PLN03015 386 WMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFEWAKR 465 (470)
T ss_pred HHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHh
Confidence 999999955489999994 2 58999999999999963 4578999999999999999999999999999999987
Q ss_pred H
Q 012563 457 I 457 (460)
Q Consensus 457 ~ 457 (460)
+
T Consensus 466 ~ 466 (470)
T PLN03015 466 C 466 (470)
T ss_pred c
Confidence 6
No 15
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=2.7e-62 Score=479.73 Aligned_cols=423 Identities=29% Similarity=0.495 Sum_probs=319.7
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCC--CeEEE--EeCCCCCCC-------C-CCCCCceEEeCCCCCCCCCC--C
Q 012563 13 NGRRVILFPLPFQGHINPMLQLGSILYSKG--FSITI--IHTKFNSPN-------S-CNYPHFDFHSISDGLTDPSA--E 78 (460)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~lA~~L~~rG--h~V~~--~~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~--~ 78 (460)
.+.||+++|+|++||++|++.||+.|+.+| +.||+ +++..+... . ...++++++.+|++.+.... .
T Consensus 2 ~~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~ 81 (451)
T PLN03004 2 GEEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSSTS 81 (451)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCcccc
Confidence 467999999999999999999999999998 55665 444332211 1 11246999999976532211 1
Q ss_pred C--HHHHHHHHHHhcchhHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH-HHhhcCCCeEEEeCccHHHHHHHhhc
Q 012563 79 D--STTILITLNAKCMVPFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH-VADEFKLPTIILQTHSVSGYLGIAAY 155 (460)
Q Consensus 79 ~--~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~-~A~~lgiP~v~~~~~~~~~~~~~~~~ 155 (460)
. ....+......+...+.+.++++... + +++|||+|.+..|+. +|+++|||++.++++++...+.+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~------pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~ 153 (451)
T PLN03004 82 RHHHESLLLEILCFSNPSVHRTLFSLSRN--F------NVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYL 153 (451)
T ss_pred ccCHHHHHHHHHHhhhHHHHHHHHhcCCC--C------CceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHH
Confidence 1 22333334445556666666665321 1 569999999999999 99999999999999999988887764
Q ss_pred ccccccCCCCCCCCCCCCccCCCCCCCCCCCCCcccCCCCCcHHHHHHHHhhhccCceEEecchHHhhHHHhhcCccccC
Q 012563 156 PFLRDKGYVPIQDPQSESPVIEYPPLRVKDIPKLETRYPEYNYPLVSAMVNNIKASSGMIWNTFEELEQAALSTLPEEYS 235 (460)
Q Consensus 156 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~ 235 (460)
+........+.........+|+++.++..+++.............+.+....+.+++++++|||.+||+..++.+++. +
T Consensus 154 ~~~~~~~~~~~~~~~~~v~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~-~ 232 (451)
T PLN03004 154 PTIDETTPGKNLKDIPTVHIPGVPPMKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEE-L 232 (451)
T ss_pred HhccccccccccccCCeecCCCCCCCChHHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhc-C
Confidence 432111000000011123578888888888886542222223445555566677888999999999999999998764 3
Q ss_pred C-CCceeecccccCCCCCCCCccccccchhhhhccCCCCeEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEECCCCC
Q 012563 236 G-IPVFPIGPFHKYFPASSSSLLSQDQSSISWLDKQAPKSVIYVSFGSVAAINETEFLEIAWGLANSRVPFLWVVRPGLV 314 (460)
Q Consensus 236 ~-~pv~~vGpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~ 314 (460)
. +|++.|||+...... .......+.++.+|||++++++||||||||...++.+++.+++.+|+.++++|||+++....
T Consensus 233 ~~~~v~~vGPl~~~~~~-~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~ 311 (451)
T PLN03004 233 CFRNIYPIGPLIVNGRI-EDRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPE 311 (451)
T ss_pred CCCCEEEEeeeccCccc-cccccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCcc
Confidence 3 579999999753211 00111123458999999988999999999999899999999999999999999999985311
Q ss_pred CCc--hhhc-cCchhHHhhhCCCc-eEEeccchHHHhccCCCcceeeccCchhhHHHHhhCCCeeecCcccchhhHHHHH
Q 012563 315 DGV--EWLE-ALPKGYLEMVDGRG-YIVQWAPQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCLADQMVNARYV 390 (460)
Q Consensus 315 ~~~--~~~~-~~~~~~~~~~~~~~-~~~~~vp~~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v 390 (460)
... .... .+|++|++|.+++. ++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++
T Consensus 312 ~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~ 391 (451)
T PLN03004 312 LEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMI 391 (451)
T ss_pred ccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhHHHH
Confidence 000 0022 38899999998655 4569999999999999999999999999999999999999999999999999999
Q ss_pred HHhhceeEeeCC----ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 012563 391 SHVWRVGLHLEG----KLEKKEIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQ 448 (460)
Q Consensus 391 ~~~lG~G~~~~~----~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~ 448 (460)
++.+|+|+.++. .++.++|.++|+++|++ ++||++++++++..+.|+++||||++
T Consensus 392 ~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~---~~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 392 VDEIKIAISMNESETGFVSSTEVEKRVQEIIGE---CPVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred HHHhCceEEecCCcCCccCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 754799999963 47999999999999998 89999999999999999999999875
No 16
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=5.6e-62 Score=487.11 Aligned_cols=434 Identities=28% Similarity=0.473 Sum_probs=319.9
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC--------CC----CceEEeCC---CCCCCCC
Q 012563 12 RNGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNSPNSCN--------YP----HFDFHSIS---DGLTDPS 76 (460)
Q Consensus 12 ~~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~~~~--------~~----~~~~~~~~---~~~~~~~ 76 (460)
+++.||+++|+|++||++|++.||++|++||++|||++++.+...... .+ .+.+.++| ++++++.
T Consensus 3 ~~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~ 82 (482)
T PLN03007 3 HEKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGC 82 (482)
T ss_pred CCCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCc
Confidence 346799999999999999999999999999999999999866532210 11 34445555 3555443
Q ss_pred CCC----------HHHHHHHHHHhcchhHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH-HHhhcCCCeEEEeCcc
Q 012563 77 AED----------STTILITLNAKCMVPFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH-VADEFKLPTIILQTHS 145 (460)
Q Consensus 77 ~~~----------~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~-~A~~lgiP~v~~~~~~ 145 (460)
+.. ...++..+. .....+.+.++++.+.. +|||||+|.++.|+. +|+++|||++.+++++
T Consensus 83 e~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~l~~~--------~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~ 153 (482)
T PLN03007 83 ENVDFITSNNNDDSGDLFLKFL-FSTKYFKDQLEKLLETT--------RPDCLVADMFFPWATEAAEKFGVPRLVFHGTG 153 (482)
T ss_pred ccccccccccccchHHHHHHHH-HHHHHHHHHHHHHHhcC--------CCCEEEECCcchhHHHHHHHhCCCeEEeeccc
Confidence 221 112333332 22334555666665432 789999999999999 9999999999999999
Q ss_pred HHHHHHHhhcccccccCCCCCCCCCCCCccCCCC---CCCCCCCCCcccCCCCCcHHHHHHHHhhhccCceEEecchHHh
Q 012563 146 VSGYLGIAAYPFLRDKGYVPIQDPQSESPVIEYP---PLRVKDIPKLETRYPEYNYPLVSAMVNNIKASSGMIWNTFEEL 222 (460)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l 222 (460)
++..+....+....+....+.. .....+++++ .++..+++.. .....+...+....+...+++++++||+++|
T Consensus 154 a~~~~~~~~~~~~~~~~~~~~~--~~~~~~pg~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~l 229 (482)
T PLN03007 154 YFSLCASYCIRVHKPQKKVASS--SEPFVIPDLPGDIVITEEQINDA--DEESPMGKFMKEVRESEVKSFGVLVNSFYEL 229 (482)
T ss_pred HHHHHHHHHHHhcccccccCCC--CceeeCCCCCCccccCHHhcCCC--CCchhHHHHHHHHHhhcccCCEEEEECHHHH
Confidence 8876665432211111111110 0111255554 2223333321 1112234445556666788899999999999
Q ss_pred hHHHhhcCccccCCCCceeecccccCCCCC------CCCccccccchhhhhccCCCCeEEEEEecccccCCHHHHHHHHH
Q 012563 223 EQAALSTLPEEYSGIPVFPIGPFHKYFPAS------SSSLLSQDQSSISWLDKQAPKSVIYVSFGSVAAINETEFLEIAW 296 (460)
Q Consensus 223 e~~~~~~~~~~~~~~pv~~vGpl~~~~~~~------~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~ 296 (460)
|+..++.+++. ...++++|||+....... +......+.++.+|+++++++++|||||||+...+.+++.+++.
T Consensus 230 e~~~~~~~~~~-~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~ 308 (482)
T PLN03007 230 ESAYADFYKSF-VAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAA 308 (482)
T ss_pred HHHHHHHHHhc-cCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHH
Confidence 99988888775 556799999986532210 00011123558999999888999999999999888899999999
Q ss_pred HHHhCCCCEEEEECCCCCCCchhhccCchhHHhhhC-CCceEEeccchHHHhccCCCcceeeccCchhhHHHHhhCCCee
Q 012563 297 GLANSRVPFLWVVRPGLVDGVEWLEALPKGYLEMVD-GRGYIVQWAPQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMI 375 (460)
Q Consensus 297 al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~vp~~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v 375 (460)
+|+.++++|||+++...... +....+|+++.++.. .++++.+|+||.+||+|+++++|||||||||++||+++|||||
T Consensus 309 ~l~~~~~~flw~~~~~~~~~-~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v 387 (482)
T PLN03007 309 GLEGSGQNFIWVVRKNENQG-EKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMV 387 (482)
T ss_pred HHHHCCCCEEEEEecCCccc-chhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCee
Confidence 99999999999998642111 112348899988875 4555669999999999999999999999999999999999999
Q ss_pred ecCcccchhhHHHHHHHhhceeEee--------CC-ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCh
Q 012563 376 CQPCLADQMVNARYVSHVWRVGLHL--------EG-KLEKKEIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSS 446 (460)
Q Consensus 376 ~~P~~~DQ~~na~~v~~~lG~G~~~--------~~-~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~ 446 (460)
++|+++||+.||+++++.+++|+.+ +. .++.++|.++|+++|.++++++||+||+++++.+++|+++||||
T Consensus 388 ~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~gGsS 467 (482)
T PLN03007 388 TWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEEGGSS 467 (482)
T ss_pred eccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCCCcH
Confidence 9999999999999887534555443 23 58999999999999998667799999999999999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 012563 447 HQALGRLVDHILSF 460 (460)
Q Consensus 447 ~~~~~~~~~~~~~~ 460 (460)
+++++++++.+.++
T Consensus 468 ~~~l~~~v~~~~~~ 481 (482)
T PLN03007 468 FNDLNKFMEELNSR 481 (482)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998763
No 17
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=4.8e-62 Score=486.86 Aligned_cols=430 Identities=30% Similarity=0.492 Sum_probs=326.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCC--CeEEEEeCCCCCCC-------C---CC--CCCceEEeCCCCCCCCCCCC
Q 012563 14 GRRVILFPLPFQGHINPMLQLGSILYSKG--FSITIIHTKFNSPN-------S---CN--YPHFDFHSISDGLTDPSAED 79 (460)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~lA~~L~~rG--h~V~~~~~~~~~~~-------~---~~--~~~~~~~~~~~~~~~~~~~~ 79 (460)
|+||+++|+|++||++|++.||+.|+.+| ..|||++++.+... . .. .++++++.+|++..+....
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~- 80 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTTED- 80 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCcccc-
Confidence 78999999999999999999999999998 88999999866431 1 11 2369999999665422111
Q ss_pred HHHHHHHHHHhcchhHHHHHHHHhhc----CCCCCCCCCCceEEEEcCcchHHH-HHhhcCCCeEEEeCccHHHHHHHhh
Q 012563 80 STTILITLNAKCMVPFRNCLAKLVSN----TNNNNAQEDSVACLITDFLWQFTH-VADEFKLPTIILQTHSVSGYLGIAA 154 (460)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~~l~~l~~~----~~~~~~~~~~pDlvI~D~~~~~~~-~A~~lgiP~v~~~~~~~~~~~~~~~ 154 (460)
. .+..+...+...+.+.++++... ..+ +.+|||+|.++.|+. +|+++|||++.++++++...+.+.+
T Consensus 81 ~--~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~------pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~ 152 (481)
T PLN02554 81 P--TFQSYIDNQKPKVRDAVAKLVDDSSTPSSP------RLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLH 152 (481)
T ss_pred h--HHHHHHHHHHHHHHHHHHHHHhhhccCCCC------CeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHh
Confidence 1 11222234445556666665432 111 348999999999999 9999999999999999999888876
Q ss_pred cccccccCCCCC---CCCCCCCccCCCC-CCCCCCCCCcccCCCCCcHHHHHHHHhhhccCceEEecchHHhhHHHhhcC
Q 012563 155 YPFLRDKGYVPI---QDPQSESPVIEYP-PLRVKDIPKLETRYPEYNYPLVSAMVNNIKASSGMIWNTFEELEQAALSTL 230 (460)
Q Consensus 155 ~~~~~~~~~~p~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~ 230 (460)
.+........+. .+......+|+++ +++..+++..... ......+.+..+.+.+++++++||+.+||+.....+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~--~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l 230 (481)
T PLN02554 153 VQMLYDEKKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLS--KEWLPLFLAQARRFREMKGILVNTVAELEPQALKFF 230 (481)
T ss_pred hhhhccccccCccccCCCCceeECCCCCCCCCHHHCCCcccC--HHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHH
Confidence 544321110110 1111122477774 6777777743311 122344455556678889999999999999887777
Q ss_pred cccc-CCCCceeeccccc-CCCCCCCCccccccchhhhhccCCCCeEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEE
Q 012563 231 PEEY-SGIPVFPIGPFHK-YFPASSSSLLSQDQSSISWLDKQAPKSVIYVSFGSVAAINETEFLEIAWGLANSRVPFLWV 308 (460)
Q Consensus 231 ~~~~-~~~pv~~vGpl~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~ 308 (460)
.... ..+|++.|||+.. ..+. ........+++.+|++++++++||||||||+..++.+++.+++.+|+.++++|||+
T Consensus 231 ~~~~~~~~~v~~vGpl~~~~~~~-~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~ 309 (481)
T PLN02554 231 SGSSGDLPPVYPVGPVLHLENSG-DDSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWS 309 (481)
T ss_pred HhcccCCCCEEEeCCCccccccc-cccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEE
Confidence 6420 1146999999943 2221 00001223459999999888999999999998889999999999999999999999
Q ss_pred ECCCCCC------C--chhhccCchhHHhhhCCCceEEeccchHHHhccCCCcceeeccCchhhHHHHhhCCCeeecCcc
Q 012563 309 VRPGLVD------G--VEWLEALPKGYLEMVDGRGYIVQWAPQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCL 380 (460)
Q Consensus 309 ~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~~~vp~~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~ 380 (460)
++..... + ......+|+++.++.++|+++++|+||.+||.|+++++|||||||||++||+++|||||++|++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~~ 389 (481)
T PLN02554 310 LRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLY 389 (481)
T ss_pred EcCCcccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecCcc
Confidence 9753110 0 0001226899999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHH-HHHHhhceeEeeC------------CccCHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHhcCCCh
Q 012563 381 ADQMVNAR-YVSHVWRVGLHLE------------GKLEKKEIETAIRRLMV-EAEGQEMRERITCLKKNVDACLRQGGSS 446 (460)
Q Consensus 381 ~DQ~~na~-~v~~~lG~G~~~~------------~~~~~~~l~~~i~~ll~-~~~~~~~~~~a~~l~~~~~~~~~~~g~~ 446 (460)
+||+.||+ ++++ +|+|+.++ ..++.++|.++|+++|+ | ++||+||+++++.+++|+++||||
T Consensus 390 ~DQ~~Na~~~v~~-~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~---~~~r~~a~~l~~~~~~av~~gGss 465 (481)
T PLN02554 390 AEQKFNAFEMVEE-LGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQD---SDVRKRVKEMSEKCHVALMDGGSS 465 (481)
T ss_pred ccchhhHHHHHHH-hCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCChH
Confidence 99999995 5777 79999984 15799999999999997 5 899999999999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 012563 447 HQALGRLVDHILS 459 (460)
Q Consensus 447 ~~~~~~~~~~~~~ 459 (460)
.++++++++.+..
T Consensus 466 ~~~l~~lv~~~~~ 478 (481)
T PLN02554 466 HTALKKFIQDVTK 478 (481)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999863
No 18
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=1.9e-61 Score=471.77 Aligned_cols=415 Identities=24% Similarity=0.377 Sum_probs=316.3
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC---CC-C--ceEEeCC--CCCCCCCCCC---HH
Q 012563 13 NGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNSPNSCN---YP-H--FDFHSIS--DGLTDPSAED---ST 81 (460)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~~~~---~~-~--~~~~~~~--~~~~~~~~~~---~~ 81 (460)
-|+||+++|++++||++|++.||+.|+.+|+.|||++++.+...... .+ + +.+..+| ++++++.+.. ..
T Consensus 4 ~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~~~glp~g~e~~~~~~~ 83 (453)
T PLN02764 4 LKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPHVDGLPVGTETVSEIPV 83 (453)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcccccCCCCceEEEEECCCcCCCCCcccccccCCh
Confidence 47899999999999999999999999999999999999876433221 11 2 6677777 6676553321 21
Q ss_pred HHHHHHHHhcchhHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH-HHhhcCCCeEEEeCccHHHHHHHhhcccccc
Q 012563 82 TILITLNAKCMVPFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH-VADEFKLPTIILQTHSVSGYLGIAAYPFLRD 160 (460)
Q Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~-~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 160 (460)
.....+...+. .++..++++++.. +|||||+|. ..|+. +|+++|||++.++++++...+.+.. +.
T Consensus 84 ~~~~~~~~a~~-~~~~~~~~~l~~~--------~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~--- 149 (453)
T PLN02764 84 TSADLLMSAMD-LTRDQVEVVVRAV--------EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-PG--- 149 (453)
T ss_pred hHHHHHHHHHH-HhHHHHHHHHHhC--------CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-cc---
Confidence 22222222222 2334444444332 679999995 89999 9999999999999999987777642 11
Q ss_pred cCCCCCCCCCCCCccCCCCC----CCCCCCCCccc----CCCCCcHHHHHHHHhhhccCceEEecchHHhhHHHhhcCcc
Q 012563 161 KGYVPIQDPQSESPVIEYPP----LRVKDIPKLET----RYPEYNYPLVSAMVNNIKASSGMIWNTFEELEQAALSTLPE 232 (460)
Q Consensus 161 ~~~~p~~~~~~~~~~~~~~~----~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~ 232 (460)
...+ ..+|+++. ++..+++.... .........+.+..+.+..++++++|||.+||+..++.++.
T Consensus 150 -~~~~-------~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~ 221 (453)
T PLN02764 150 -GELG-------VPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEK 221 (453)
T ss_pred -ccCC-------CCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHh
Confidence 1110 11245542 44444443210 01112233444454566788899999999999999999876
Q ss_pred ccCCCCceeecccccCCCCCCCCccccccchhhhhccCCCCeEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEECCC
Q 012563 233 EYSGIPVFPIGPFHKYFPASSSSLLSQDQSSISWLDKQAPKSVIYVSFGSVAAINETEFLEIAWGLANSRVPFLWVVRPG 312 (460)
Q Consensus 233 ~~~~~pv~~vGpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 312 (460)
. .++|++.|||+...... . ...+.++.+|||++++++||||||||...++.+++.++..+|+..+.+|+|+++..
T Consensus 222 ~-~~~~v~~VGPL~~~~~~--~--~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~ 296 (453)
T PLN02764 222 H-CRKKVLLTGPVFPEPDK--T--RELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPP 296 (453)
T ss_pred h-cCCcEEEeccCccCccc--c--ccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 4 44679999999754311 0 11234689999999999999999999999999999999999999999999999853
Q ss_pred CCCCchhhccCchhHHhhhCCCceEE-eccchHHHhccCCCcceeeccCchhhHHHHhhCCCeeecCcccchhhHHHHHH
Q 012563 313 LVDGVEWLEALPKGYLEMVDGRGYIV-QWAPQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCLADQMVNARYVS 391 (460)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vp~~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~ 391 (460)
...... ...+|++|+++.++++.++ +|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||++++
T Consensus 297 ~~~~~~-~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~ 375 (453)
T PLN02764 297 RGSSTI-QEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLS 375 (453)
T ss_pred CCCcch-hhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHH
Confidence 211111 2458999999998888776 99999999999999999999999999999999999999999999999999996
Q ss_pred HhhceeEeeCC----ccCHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 012563 392 HVWRVGLHLEG----KLEKKEIETAIRRLMVEA--EGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHILS 459 (460)
Q Consensus 392 ~~lG~G~~~~~----~~~~~~l~~~i~~ll~~~--~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
+.+|+|+.+.. .++.++|+++|+++|+++ +++.+|++++++++.++ ++|||.++++++++.+..
T Consensus 376 ~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~----~~GSS~~~l~~lv~~~~~ 445 (453)
T PLN02764 376 DELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLA----SPGLLTGYVDNFIESLQD 445 (453)
T ss_pred HHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHH
Confidence 54799998742 489999999999999873 37789999999999997 799999999999999875
No 19
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=2.6e-61 Score=473.64 Aligned_cols=415 Identities=23% Similarity=0.362 Sum_probs=309.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCC----CCceEEeC--C--CCCCCCCCCC--HHH
Q 012563 13 NGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNSPNSCNY----PHFDFHSI--S--DGLTDPSAED--STT 82 (460)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~~~~~----~~~~~~~~--~--~~~~~~~~~~--~~~ 82 (460)
.+.||+++|+|++||++|++.||+.|+++||+|||++++.+....... .++++..+ | ++++++.+.+ ...
T Consensus 3 ~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p~~dgLp~g~~~~~~l~~ 82 (442)
T PLN02208 3 PKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIPPVNGLPAGAETTSDIPI 82 (442)
T ss_pred CCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccCCCCceEEEEeCCCCccCCCCCcccccchhH
Confidence 468999999999999999999999999999999999987555433211 24556554 3 4566553322 111
Q ss_pred HHHHHHHhcchhHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH-HHhhcCCCeEEEeCccHHHHHHHhhccccccc
Q 012563 83 ILITLNAKCMVPFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH-VADEFKLPTIILQTHSVSGYLGIAAYPFLRDK 161 (460)
Q Consensus 83 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~-~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 161 (460)
.+..+.......+.+.++++++.. ++||||+| ++.|+. +|.++|||++.++++++.... +.+.+.
T Consensus 83 ~l~~~~~~~~~~~~~~l~~~L~~~--------~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~---- 148 (442)
T PLN02208 83 SMDNLLSEALDLTRDQVEAAVRAL--------RPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG---- 148 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhC--------CCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc----
Confidence 112221122223444455554432 68999999 578999 999999999999999998654 333221
Q ss_pred CCCCCCCCCCCCccCCCCC----CCCCCCCCcccCCCCCcHH-HHHHHHhhhccCceEEecchHHhhHHHhhcCccccCC
Q 012563 162 GYVPIQDPQSESPVIEYPP----LRVKDIPKLETRYPEYNYP-LVSAMVNNIKASSGMIWNTFEELEQAALSTLPEEYSG 236 (460)
Q Consensus 162 ~~~p~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~ 236 (460)
...+ ..+|+++. ++..+++.+. ....... ...+..+...+++++++|||.+||+..++.++.. ++
T Consensus 149 ~~~~-------~~~pglp~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~-~~ 218 (442)
T PLN02208 149 GKLG-------VPPPGYPSSKVLFRENDAHALA--TLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQ-YH 218 (442)
T ss_pred cccC-------CCCCCCCCcccccCHHHcCccc--ccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhh-cC
Confidence 0000 11355543 3344444321 1112222 2223334567889999999999999999888764 55
Q ss_pred CCceeecccccCCCCCCCCccccccchhhhhccCCCCeEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEECCCCCCC
Q 012563 237 IPVFPIGPFHKYFPASSSSLLSQDQSSISWLDKQAPKSVIYVSFGSVAAINETEFLEIAWGLANSRVPFLWVVRPGLVDG 316 (460)
Q Consensus 237 ~pv~~vGpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~ 316 (460)
++++.|||++..... .. +.++++.+|||.+++++||||||||...++.+++.+++.+++..+.+++|+++......
T Consensus 219 ~~v~~vGpl~~~~~~--~~--~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~~ 294 (442)
T PLN02208 219 KKVLLTGPMFPEPDT--SK--PLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRGSS 294 (442)
T ss_pred CCEEEEeecccCcCC--CC--CCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccc
Confidence 679999999865321 01 12345999999998899999999999998999999999998888999999998642111
Q ss_pred chhhccCchhHHhhhCCCceEE-eccchHHHhccCCCcceeeccCchhhHHHHhhCCCeeecCcccchhhHHHHHHHhhc
Q 012563 317 VEWLEALPKGYLEMVDGRGYIV-QWAPQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCLADQMVNARYVSHVWR 395 (460)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~-~~vp~~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG 395 (460)
.....+|++|.++..++..++ +|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.+|
T Consensus 295 -~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g 373 (442)
T PLN02208 295 -TVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFE 373 (442)
T ss_pred -chhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhc
Confidence 112458999999987655555 999999999999999999999999999999999999999999999999998776479
Q ss_pred eeEeeCC-c---cCHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC
Q 012563 396 VGLHLEG-K---LEKKEIETAIRRLMVEA--EGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHILSF 460 (460)
Q Consensus 396 ~G~~~~~-~---~~~~~l~~~i~~ll~~~--~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 460 (460)
+|+.++. + ++.++|.++|+++|+++ +++.+|++++++++.+. ++|||.++++++++.+.++
T Consensus 374 ~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~----~~gsS~~~l~~~v~~l~~~ 440 (442)
T PLN02208 374 VSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV----SPGLLTGYVDKFVEELQEY 440 (442)
T ss_pred eeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh----cCCcHHHHHHHHHHHHHHh
Confidence 9999965 3 89999999999999764 26889999999999985 6889999999999998753
No 20
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=8.2e-61 Score=477.30 Aligned_cols=438 Identities=28% Similarity=0.454 Sum_probs=325.6
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCC---eEEEEeCCCCCC---C------CCCCCCceEEeCCCCCCC-CCC--
Q 012563 13 NGRRVILFPLPFQGHINPMLQLGSILYSKGF---SITIIHTKFNSP---N------SCNYPHFDFHSISDGLTD-PSA-- 77 (460)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh---~V~~~~~~~~~~---~------~~~~~~~~~~~~~~~~~~-~~~-- 77 (460)
++.||+++|+|++||++|++.||+.|+.+|. .||++++..+.. . ....++++|+.+|+...+ ..+
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~~~~ 81 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPMELF 81 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCcccccc
Confidence 5679999999999999999999999999983 567777543321 0 111246999999865322 111
Q ss_pred C-CHHHHHHHHHHhcchhHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH-HHhhcCCCeEEEeCccHHHHHHHhhc
Q 012563 78 E-DSTTILITLNAKCMVPFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH-VADEFKLPTIILQTHSVSGYLGIAAY 155 (460)
Q Consensus 78 ~-~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~-~A~~lgiP~v~~~~~~~~~~~~~~~~ 155 (460)
. .....+..+...+...+.+.++++...... .+.++++|||+|.+++|+. +|+++|||++.++++++...+.+.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~ 159 (475)
T PLN02167 82 VKASEAYILEFVKKMVPLVRDALSTLVSSRDE--SDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYL 159 (475)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhccc--cCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHH
Confidence 1 122233334445555666667666432100 0000359999999999999 99999999999999999888777654
Q ss_pred ccccccCCCCCC--CCCCCCccCCC-CCCCCCCCCCcccCCCCCcHHHHHHHHhhhccCceEEecchHHhhHHHhhcCcc
Q 012563 156 PFLRDKGYVPIQ--DPQSESPVIEY-PPLRVKDIPKLETRYPEYNYPLVSAMVNNIKASSGMIWNTFEELEQAALSTLPE 232 (460)
Q Consensus 156 ~~~~~~~~~p~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~ 232 (460)
+........... .......+|++ +.++..+++...... .....+.+..+...+++++++|||.+||+..++.++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~ 237 (475)
T PLN02167 160 PERHRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMK--ESYEAWVEIAERFPEAKGILVNSFTELEPNAFDYFSR 237 (475)
T ss_pred HHhccccccccccCCCCCeeECCCCCCCCChhhCchhhhCc--chHHHHHHHHHhhcccCEeeeccHHHHHHHHHHHHHh
Confidence 421111000000 00112347887 357777776432111 1234444555667888999999999999999888754
Q ss_pred ccCC--CCceeecccccCCCCCCCCcc--ccccchhhhhccCCCCeEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEE
Q 012563 233 EYSG--IPVFPIGPFHKYFPASSSSLL--SQDQSSISWLDKQAPKSVIYVSFGSVAAINETEFLEIAWGLANSRVPFLWV 308 (460)
Q Consensus 233 ~~~~--~pv~~vGpl~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~ 308 (460)
. .+ +|+++|||+....... .... ..+.++.+||++++.+++|||||||+..++.+++.+++.+|+.++++|||+
T Consensus 238 ~-~~~~p~v~~vGpl~~~~~~~-~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw~ 315 (475)
T PLN02167 238 L-PENYPPVYPVGPILSLKDRT-SPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLWS 315 (475)
T ss_pred h-cccCCeeEEecccccccccc-CCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCcEEEE
Confidence 2 11 3599999998643210 0111 123468999999888999999999998889999999999999999999999
Q ss_pred ECCCCCCCchhhccCchhHHhhhCCCceEEeccchHHHhccCCCcceeeccCchhhHHHHhhCCCeeecCcccchhhHHH
Q 012563 309 VRPGLVDGVEWLEALPKGYLEMVDGRGYIVQWAPQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCLADQMVNAR 388 (460)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~DQ~~na~ 388 (460)
++.......+....+|+++.++..+++++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+
T Consensus 316 ~~~~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~ 395 (475)
T PLN02167 316 IRTNPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQQLNAF 395 (475)
T ss_pred EecCcccccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEeccccccchhhHH
Confidence 98532111011234899999999999999999999999999999999999999999999999999999999999999997
Q ss_pred H-HHHhhceeEeeCC--------ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 012563 389 Y-VSHVWRVGLHLEG--------KLEKKEIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHILS 459 (460)
Q Consensus 389 ~-v~~~lG~G~~~~~--------~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
+ +++ +|+|+.+.. .++.++|+++|+++|.++ +.||++|+++++.+++++.+||||.++++++++.|..
T Consensus 396 ~~~~~-~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~--~~~r~~a~~~~~~~~~av~~gGsS~~~l~~~v~~i~~ 472 (475)
T PLN02167 396 TMVKE-LGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE--DVPRKKVKEIAEAARKAVMDGGSSFVAVKRFIDDLLG 472 (475)
T ss_pred HHHHH-hCeeEEeecccccccCCcccHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 6 566 799998842 469999999999999762 5899999999999999999999999999999998863
No 21
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=2.6e-60 Score=467.01 Aligned_cols=414 Identities=23% Similarity=0.327 Sum_probs=308.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC----CCCceEEeC--C--CCCCCCCCCC--HHH
Q 012563 13 NGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNSPNSCN----YPHFDFHSI--S--DGLTDPSAED--STT 82 (460)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~~~~----~~~~~~~~~--~--~~~~~~~~~~--~~~ 82 (460)
.+.||+++|+|++||++|++.||+.|+++|++|||++++.+...... .++++|..+ | ++++++.+.. ...
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP~~dGLP~g~e~~~~l~~ 82 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLPPVDGLPFGAETASDLPN 82 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccccCCCceEEEEecCCCcCCCCCcccccccchh
Confidence 56899999999999999999999999999999999999765433321 124777544 3 5666553322 111
Q ss_pred HHHHHHHhcchhHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH-HHhhcCCCeEEEeCccHHHHHHHhhccccccc
Q 012563 83 ILITLNAKCMVPFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH-VADEFKLPTIILQTHSVSGYLGIAAYPFLRDK 161 (460)
Q Consensus 83 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~-~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 161 (460)
............+.+.+++++... +|||||+|. +.|+. +|+++|||++.+++.++...+.+.+ +. ..
T Consensus 83 ~~~~~~~~a~~~l~~~l~~~L~~~--------~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~-~~--~~ 150 (446)
T PLN00414 83 STKKPIFDAMDLLRDQIEAKVRAL--------KPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLA-PR--AE 150 (446)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcC--------CCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhC-cH--hh
Confidence 111111122223455555554432 689999995 89999 9999999999999999988777654 11 00
Q ss_pred CCCCCCCCCCCCccCCCCC----CCCCCCC--CcccCCCCCcHHHHHHHHhhhccCceEEecchHHhhHHHhhcCccccC
Q 012563 162 GYVPIQDPQSESPVIEYPP----LRVKDIP--KLETRYPEYNYPLVSAMVNNIKASSGMIWNTFEELEQAALSTLPEEYS 235 (460)
Q Consensus 162 ~~~p~~~~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~ 235 (460)
.. ..+++++. ++..+.+ ... . .....+.+..+...+++++++|||.+||+..++.++.. +
T Consensus 151 ~~---------~~~pg~p~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~-~ 216 (446)
T PLN00414 151 LG---------FPPPDYPLSKVALRGHDANVCSLF-A---NSHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQ-C 216 (446)
T ss_pred cC---------CCCCCCCCCcCcCchhhcccchhh-c---ccHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHh-c
Confidence 00 01233332 1111111 111 1 11234445556677889999999999999999988775 5
Q ss_pred CCCceeecccccCCCCCCCCccccccchhhhhccCCCCeEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEECCCCCC
Q 012563 236 GIPVFPIGPFHKYFPASSSSLLSQDQSSISWLDKQAPKSVIYVSFGSVAAINETEFLEIAWGLANSRVPFLWVVRPGLVD 315 (460)
Q Consensus 236 ~~pv~~vGpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~ 315 (460)
++|++.|||+...... ......++++.+|||++++++||||||||....+.+++.++..+|+.++.+|+|++......
T Consensus 217 ~~~v~~VGPl~~~~~~--~~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~ 294 (446)
T PLN00414 217 QRKVLLTGPMLPEPQN--KSGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKGS 294 (446)
T ss_pred CCCeEEEcccCCCccc--ccCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCCc
Confidence 5679999999753311 00111234588999999999999999999999999999999999999999999999863211
Q ss_pred CchhhccCchhHHhhhCCCceEE-eccchHHHhccCCCcceeeccCchhhHHHHhhCCCeeecCcccchhhHHHHHHHhh
Q 012563 316 GVEWLEALPKGYLEMVDGRGYIV-QWAPQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCLADQMVNARYVSHVW 394 (460)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~-~~vp~~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~l 394 (460)
++. ...+|++|+++.++++.++ +|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.+
T Consensus 295 ~~~-~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~ 373 (446)
T PLN00414 295 STV-QEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEEL 373 (446)
T ss_pred ccc-hhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHh
Confidence 111 2358999999999999887 89999999999999999999999999999999999999999999999999996447
Q ss_pred ceeEeeCC----ccCHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 012563 395 RVGLHLEG----KLEKKEIETAIRRLMVEA--EGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHILS 459 (460)
Q Consensus 395 G~G~~~~~----~~~~~~l~~~i~~ll~~~--~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
|+|+.+.. .++.++|+++++++|.++ .++.+|++++++++.+. ++||++ ..++++++.+++
T Consensus 374 g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~---~~gg~s-s~l~~~v~~~~~ 440 (446)
T PLN00414 374 EVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLV---SPGLLS-GYADKFVEALEN 440 (446)
T ss_pred CeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH---cCCCcH-HHHHHHHHHHHH
Confidence 99999953 389999999999999763 26789999999999975 345534 448999998865
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=1.1e-49 Score=399.11 Aligned_cols=388 Identities=18% Similarity=0.186 Sum_probs=273.7
Q ss_pred cEEEEE-cCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC-CCCCCCCCCceEEeCCC---CCC---CCC---C--C---
Q 012563 15 RRVILF-PLPFQGHINPMLQLGSILYSKGFSITIIHTKFN-SPNSCNYPHFDFHSISD---GLT---DPS---A--E--- 78 (460)
Q Consensus 15 ~~il~~-~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~---~~~---~--~--- 78 (460)
-||+++ |.++.+|+.-+..++++|++|||+||++++... ........+++.+.++. ... ... . .
T Consensus 21 ~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (507)
T PHA03392 21 ARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVYYASHLCGNITEIDASLSVEYFKKLVKSSAVFRKRGVVA 100 (507)
T ss_pred ccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccccccCCCCCEEEEEcCCChHHHHHHHhhhhHHHhhhhhh
Confidence 457755 889999999999999999999999999987421 11111245677766641 100 000 0 0
Q ss_pred C----HHHHHHHHHHhcchhHH-HHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH-HHhhc-CCCeEEEeCccHHHHHH
Q 012563 79 D----STTILITLNAKCMVPFR-NCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH-VADEF-KLPTIILQTHSVSGYLG 151 (460)
Q Consensus 79 ~----~~~~~~~~~~~~~~~l~-~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~-~A~~l-giP~v~~~~~~~~~~~~ 151 (460)
+ .......+...|...+. ..+.++++..+. ++|+||+|.+..++. +|+.+ ++|.|.+++........
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~------kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~~~ 174 (507)
T PHA03392 101 DSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNN------KFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAENF 174 (507)
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCC------ceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchhHH
Confidence 0 01112222345555554 244555542122 799999998888777 99999 99988887765544333
Q ss_pred Hhhcc-cccccCCCCCCC------CCCCCccCCCCCCCCCCCC--CcccCCCCCcHHHHH----HHHhhhccCceEEecc
Q 012563 152 IAAYP-FLRDKGYVPIQD------PQSESPVIEYPPLRVKDIP--KLETRYPEYNYPLVS----AMVNNIKASSGMIWNT 218 (460)
Q Consensus 152 ~~~~~-~~~~~~~~p~~~------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~s 218 (460)
.. .+ .|.+++|+|... +.+++++.++....+.... .......+...+.+. ...+..++.+.+++|+
T Consensus 175 ~~-~gg~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~~~~~l~lvns 253 (507)
T PHA03392 175 ET-MGAVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRELRNRVQLLFVNV 253 (507)
T ss_pred Hh-hccCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHHhCCcEEEEec
Confidence 32 34 778888888744 3334444443210000000 000000000111111 2345557778999999
Q ss_pred hHHhhHHHhhcCccccCCCCceeecccccCCCCCCCCccccccchhhhhccCCCCeEEEEEeccccc---CCHHHHHHHH
Q 012563 219 FEELEQAALSTLPEEYSGIPVFPIGPFHKYFPASSSSLLSQDQSSISWLDKQAPKSVIYVSFGSVAA---INETEFLEIA 295 (460)
Q Consensus 219 ~~~le~~~~~~~~~~~~~~pv~~vGpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~---~~~~~~~~~~ 295 (460)
.+.++++ +| +++.+++|||++.+... .. +.++++.+|++.. ++++|||||||... .+.+++..++
T Consensus 254 ~~~~d~~-----rp--~~p~v~~vGgi~~~~~~--~~--~l~~~l~~fl~~~-~~g~V~vS~GS~~~~~~~~~~~~~~~l 321 (507)
T PHA03392 254 HPVFDNN-----RP--VPPSVQYLGGLHLHKKP--PQ--PLDDYLEEFLNNS-TNGVVYVSFGSSIDTNDMDNEFLQMLL 321 (507)
T ss_pred CccccCC-----CC--CCCCeeeecccccCCCC--CC--CCCHHHHHHHhcC-CCcEEEEECCCCCcCCCCCHHHHHHHH
Confidence 9999876 66 44559999999875321 12 2334489999874 46899999999874 4678899999
Q ss_pred HHHHhCCCCEEEEECCCCCCCchhhccCchhHHhhhCCCceEEeccchHHHhccCCCcceeeccCchhhHHHHhhCCCee
Q 012563 296 WGLANSRVPFLWVVRPGLVDGVEWLEALPKGYLEMVDGRGYIVQWAPQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMI 375 (460)
Q Consensus 296 ~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v 375 (460)
+|+++.+.+|||+++..... ..+ ++|+++.+|+||.+||+|+.+++||||||+||++||+++|||+|
T Consensus 322 ~a~~~l~~~viw~~~~~~~~-----~~~--------p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v 388 (507)
T PHA03392 322 RTFKKLPYNVLWKYDGEVEA-----INL--------PANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMV 388 (507)
T ss_pred HHHHhCCCeEEEEECCCcCc-----ccC--------CCceEEecCCCHHHHhcCCCCCEEEecCCcccHHHHHHcCCCEE
Confidence 99999999999999864310 123 45559999999999999998888999999999999999999999
Q ss_pred ecCcccchhhHHHHHHHhhceeEeeCC-ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Q 012563 376 CQPCLADQMVNARYVSHVWRVGLHLEG-KLEKKEIETAIRRLMVEAEGQEMRERITCLKKNVDA 438 (460)
Q Consensus 376 ~~P~~~DQ~~na~~v~~~lG~G~~~~~-~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~ 438 (460)
++|+++||+.||+|+++ .|+|+.++. .+++++|.++|+++++| ++|++||+++++.+++
T Consensus 389 ~iP~~~DQ~~Na~rv~~-~G~G~~l~~~~~t~~~l~~ai~~vl~~---~~y~~~a~~ls~~~~~ 448 (507)
T PHA03392 389 GLPMMGDQFYNTNKYVE-LGIGRALDTVTVSAAQLVLAIVDVIEN---PKYRKNLKELRHLIRH 448 (507)
T ss_pred ECCCCccHHHHHHHHHH-cCcEEEeccCCcCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHh
Confidence 99999999999999999 599999987 89999999999999999 8999999999999994
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=1.5e-52 Score=426.97 Aligned_cols=396 Identities=24% Similarity=0.318 Sum_probs=228.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCCCCC-CCCCCceEEeCCCCCCCCCCCC-----HHH-------
Q 012563 16 RVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNSPNS-CNYPHFDFHSISDGLTDPSAED-----STT------- 82 (460)
Q Consensus 16 ~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~------- 82 (460)
||+++| ++.||+.++..|+++|++|||+||++++....... ....++++..++.......... ...
T Consensus 2 kvLv~p-~~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (500)
T PF00201_consen 2 KVLVFP-MAYSHFIFMRPLAEELAERGHNVTVLTPSPSSSLNPSKPSNIRFETYPDPYPEEEFEEIFPEFISKFFSESSF 80 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHHT------S-CCEEEE-----TT------TTHHHHHHHHHCC
T ss_pred EEEEeC-CCcCHHHHHHHHHHHHHhcCCceEEEEeecccccccccccceeeEEEcCCcchHHHhhhhHHHHHHHhhhccc
Confidence 688888 48899999999999999999999999984311111 1234566666654433322111 000
Q ss_pred ---H---H-------HHHHHhcchhHHH--HHHHHhhcCCCCCCCCCCceEEEEcCcchHHH-HHhhcCCCeEEEeCccH
Q 012563 83 ---I---L-------ITLNAKCMVPFRN--CLAKLVSNTNNNNAQEDSVACLITDFLWQFTH-VADEFKLPTIILQTHSV 146 (460)
Q Consensus 83 ---~---~-------~~~~~~~~~~l~~--~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~-~A~~lgiP~v~~~~~~~ 146 (460)
. + ......|...+.+ .++.+... ++|++|+|.+..++. +|+.+|+|.+.+.++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~---------~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~ 151 (500)
T PF00201_consen 81 ANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSE---------KFDLVISDAFDPCGLALAHYLGIPVIIISSSTP 151 (500)
T ss_dssp HHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHH---------HHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCS
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh---------ccccceEeeccchhHHHHHHhcCCeEEEecccc
Confidence 0 0 0111223222211 22223222 699999999988888 99999999987655433
Q ss_pred HHHHHHhhcccccccCCCCCCC------CCCCCccCCCCC-CCCCCCCC-cccC---CCCCcHHHHHHHHhhhccCceEE
Q 012563 147 SGYLGIAAYPFLRDKGYVPIQD------PQSESPVIEYPP-LRVKDIPK-LETR---YPEYNYPLVSAMVNNIKASSGMI 215 (460)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~-~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~l 215 (460)
.........+.+.+++|+|... +.+.+++.+... +....+.. .... ........-....+.+.+...++
T Consensus 152 ~~~~~~~~~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 231 (500)
T PF00201_consen 152 MYDLSSFSGGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFPFSFRELLSNASLVL 231 (500)
T ss_dssp CSCCTCCTSCCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-GGGCHHHHHHHHHCC
T ss_pred cchhhhhccCCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhcccccccHHHHHHHHHHh
Confidence 3222222224566677777643 222333333210 00000000 0000 00000000011223334455677
Q ss_pred ecchHHhhHHHhhcCccccCCCCceeecccccCCCCCCCCccccccchhhhhccCCCCeEEEEEeccccc-CCHHHHHHH
Q 012563 216 WNTFEELEQAALSTLPEEYSGIPVFPIGPFHKYFPASSSSLLSQDQSSISWLDKQAPKSVIYVSFGSVAA-INETEFLEI 294 (460)
Q Consensus 216 ~~s~~~le~~~~~~~~~~~~~~pv~~vGpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~-~~~~~~~~~ 294 (460)
+|+.+.++.+ +|. .+.+++||+++....+ +++. ++.+|++...++++|||||||... ++.+....+
T Consensus 232 ~ns~~~ld~p-----rp~--~p~v~~vGgl~~~~~~----~l~~--~~~~~~~~~~~~~vv~vsfGs~~~~~~~~~~~~~ 298 (500)
T PF00201_consen 232 INSHPSLDFP-----RPL--LPNVVEVGGLHIKPAK----PLPE--ELWNFLDSSGKKGVVYVSFGSIVSSMPEEKLKEI 298 (500)
T ss_dssp SSTEEE---------HHH--HCTSTTGCGC-S--------TCHH--HHHHHTSTTTTTEEEEEE-TSSSTT-HHHHHHHH
T ss_pred hhccccCcCC-----cch--hhcccccCcccccccc----cccc--ccchhhhccCCCCEEEEecCcccchhHHHHHHHH
Confidence 7888777755 554 2349999999876543 3444 488999875678999999999986 444558889
Q ss_pred HHHHHhCCCCEEEEECCCCCCCchhhccCchhHHhhhCCCceEEeccchHHHhccCCCcceeeccCchhhHHHHhhCCCe
Q 012563 295 AWGLANSRVPFLWVVRPGLVDGVEWLEALPKGYLEMVDGRGYIVQWAPQQQVLAHPAVGGFLTHSGWNSTLESICEGVPM 374 (460)
Q Consensus 295 ~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~ 374 (460)
++++++++++|||++.+.. ...+| +|+++++|+||.+||.|+++++||||||+||+.||+++||||
T Consensus 299 ~~~~~~~~~~~iW~~~~~~------~~~l~--------~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~ 364 (500)
T PF00201_consen 299 AEAFENLPQRFIWKYEGEP------PENLP--------KNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQEALYHGVPM 364 (500)
T ss_dssp HHHHHCSTTEEEEEETCSH------GCHHH--------TTEEEESS--HHHHHTSTTEEEEEES--HHHHHHHHHCT--E
T ss_pred HHHHhhCCCcccccccccc------ccccc--------ceEEEeccccchhhhhcccceeeeeccccchhhhhhhccCCc
Confidence 9999999999999998742 12233 455999999999999999999999999999999999999999
Q ss_pred eecCcccchhhHHHHHHHhhceeEeeCC-ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH
Q 012563 375 ICQPCLADQMVNARYVSHVWRVGLHLEG-KLEKKEIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRL 453 (460)
Q Consensus 375 v~~P~~~DQ~~na~~v~~~lG~G~~~~~-~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~ 453 (460)
|++|+++||+.||++++++ |+|+.++. .+++++|.++|+++|+| ++|++||+++++.+++- .....+++
T Consensus 365 l~~P~~~DQ~~na~~~~~~-G~g~~l~~~~~~~~~l~~ai~~vl~~---~~y~~~a~~ls~~~~~~------p~~p~~~~ 434 (500)
T PF00201_consen 365 LGIPLFGDQPRNAARVEEK-GVGVVLDKNDLTEEELRAAIREVLEN---PSYKENAKRLSSLFRDR------PISPLERA 434 (500)
T ss_dssp EE-GCSTTHHHHHHHHHHT-TSEEEEGGGC-SHHHHHHHHHHHHHS---HHHHHHHHHHHHTTT----------------
T ss_pred cCCCCcccCCccceEEEEE-eeEEEEEecCCcHHHHHHHHHHHHhh---hHHHHHHHHHHHHHhcC------CCCHHHHH
Confidence 9999999999999999995 99999997 89999999999999999 89999999999999852 23445555
Q ss_pred HHHHh
Q 012563 454 VDHIL 458 (460)
Q Consensus 454 ~~~~~ 458 (460)
+..+|
T Consensus 435 ~~~ie 439 (500)
T PF00201_consen 435 VWWIE 439 (500)
T ss_dssp -----
T ss_pred HHHHH
Confidence 55443
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=1.6e-42 Score=342.38 Aligned_cols=370 Identities=18% Similarity=0.252 Sum_probs=249.9
Q ss_pred EcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCCC------CCHHHHHHHHHHhcch
Q 012563 20 FPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNSPNSCNYPHFDFHSISDGLTDPSA------EDSTTILITLNAKCMV 93 (460)
Q Consensus 20 ~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 93 (460)
+.+|+.||++|++.||++|+++||+|+|++++.+.+... ..|+.|+++++....... .+.......+...+..
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVE-AAGAEFVLYGSALPPPDNPPENTEEEPIDIIEKLLDEAED 79 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHH-HcCCEEEecCCcCccccccccccCcchHHHHHHHHHHHHH
Confidence 367999999999999999999999999999965554443 468999999854432100 1123333333333323
Q ss_pred hHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH-HHhhcCCCeEEEeCccHHHHHHHhhcccccccCCCCCCCCCCC
Q 012563 94 PFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH-VADEFKLPTIILQTHSVSGYLGIAAYPFLRDKGYVPIQDPQSE 172 (460)
Q Consensus 94 ~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~-~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 172 (460)
.+.+. .++.... +||+||+|.+++++. +|+.+|||+|.+++.+.... .++.+. .|... ..+
T Consensus 80 ~~~~l-~~~~~~~--------~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~----~~~~~~----~~~~~-~~~ 141 (392)
T TIGR01426 80 VLPQL-EEAYKGD--------RPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANE----EFEEMV----SPAGE-GSA 141 (392)
T ss_pred HHHHH-HHHhcCC--------CCCEEEECCccHHHHHHHHHhCCCEEEEehhhcccc----cccccc----cccch-hhh
Confidence 23222 2222221 799999999888888 99999999998865432110 001000 01100 000
Q ss_pred CccCCCCCCCCCCCCCcccCCCCCcHHHHHHHHhhh------------ccCceEEecchHHhhHHHhhcCccccCCCCce
Q 012563 173 SPVIEYPPLRVKDIPKLETRYPEYNYPLVSAMVNNI------------KASSGMIWNTFEELEQAALSTLPEEYSGIPVF 240 (460)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~l~~s~~~le~~~~~~~~~~~~~~pv~ 240 (460)
...... . .. .....+.+.+..... ......+..+.+.|++ ..+. ++.+++
T Consensus 142 ~~~~~~---~-~~--------~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~-----~~~~-~~~~~~ 203 (392)
T TIGR01426 142 EEGAIA---E-RG--------LAEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQP-----AGET-FDDSFT 203 (392)
T ss_pred hhhccc---c-ch--------hHHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCC-----Cccc-cCCCeE
Confidence 000000 0 00 000111111111110 1111133444444443 2444 667799
Q ss_pred eecccccCCCCCCCCccccccchhhhhccCCCCeEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEECCCCCCCchhh
Q 012563 241 PIGPFHKYFPASSSSLLSQDQSSISWLDKQAPKSVIYVSFGSVAAINETEFLEIAWGLANSRVPFLWVVRPGLVDGVEWL 320 (460)
Q Consensus 241 ~vGpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~ 320 (460)
++||+...... ..+|....+++++||||+||+.......+..+++++.+.+.+++|..+.....
T Consensus 204 ~~Gp~~~~~~~-----------~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~~----- 267 (392)
T TIGR01426 204 FVGPCIGDRKE-----------DGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVDP----- 267 (392)
T ss_pred EECCCCCCccc-----------cCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCCh-----
Confidence 99998754321 12366655678999999999877666788889999999999999888754210
Q ss_pred ccCchhHHhhhCCCceEEeccchHHHhccCCCcceeeccCchhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEee
Q 012563 321 EALPKGYLEMVDGRGYIVQWAPQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHL 400 (460)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~vp~~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~ 400 (460)
+.+ ...++|+.+..|+|+.++|+++++ +|||||+||++||+++|+|+|++|...||..||+++++ +|+|..+
T Consensus 268 ----~~~-~~~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~-~g~g~~l 339 (392)
T TIGR01426 268 ----ADL-GELPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAE-LGLGRHL 339 (392)
T ss_pred ----hHh-ccCCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHH-CCCEEEe
Confidence 111 123456689999999999999998 99999999999999999999999999999999999999 6999999
Q ss_pred CC-ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012563 401 EG-KLEKKEIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHI 457 (460)
Q Consensus 401 ~~-~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (460)
.. .++++.|.++|.++++| ++|+++++++++.++ ..++..++++.+.+.+
T Consensus 340 ~~~~~~~~~l~~ai~~~l~~---~~~~~~~~~l~~~~~----~~~~~~~aa~~i~~~~ 390 (392)
T TIGR01426 340 PPEEVTAEKLREAVLAVLSD---PRYAERLRKMRAEIR----EAGGARRAADEIEGFL 390 (392)
T ss_pred ccccCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHH----HcCCHHHHHHHHHHhh
Confidence 87 88999999999999999 899999999999998 4667777777666554
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=2.7e-43 Score=349.37 Aligned_cols=358 Identities=16% Similarity=0.168 Sum_probs=234.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCCCC----------C---HH
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNSPNSCNYPHFDFHSISDGLTDPSAE----------D---ST 81 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~---~~ 81 (460)
|||+|++.|+.||++|+++||++|++|||+|+|++++....... ..|++|+++++........ . ..
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVE-AAGLEFVPVGGDPDELLASPERNAGLLLLGPGLLL 79 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHH-HcCCceeeCCCCHHHHHhhhhhcccccccchHHHH
Confidence 89999999999999999999999999999999999964433333 5689999988533211000 0 11
Q ss_pred HHHHHHHHhcchhHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH-HHhhcCCCeEEEeCccHHHHHHHhhcccccc
Q 012563 82 TILITLNAKCMVPFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH-VADEFKLPTIILQTHSVSGYLGIAAYPFLRD 160 (460)
Q Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~-~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 160 (460)
.....+...+...+.+.++.+... +||+||+|.+.+++. +|+++|||++.+++++........
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~---------~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~------- 143 (401)
T cd03784 80 GALRLLRREAEAMLDDLVAAARDW---------GPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAFP------- 143 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc---------CCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccCC-------
Confidence 222223333333333333333211 899999999888888 999999999999887544221110
Q ss_pred cCCCCCCCCCCCCccCCCCCCCCCCCCC-cc-cCCCCCcHHHHHHHHhhhc---------cCceEEecchHHhhHHHhhc
Q 012563 161 KGYVPIQDPQSESPVIEYPPLRVKDIPK-LE-TRYPEYNYPLVSAMVNNIK---------ASSGMIWNTFEELEQAALST 229 (460)
Q Consensus 161 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~---------~~~~~l~~s~~~le~~~~~~ 229 (460)
|.. .+ .. ..... .. .................+. .....+....+.+ ..
T Consensus 144 ----~~~--------~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~-----~~ 202 (401)
T cd03784 144 ----PPL--------GR---AN-LRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAV-----LP 202 (401)
T ss_pred ----Ccc--------ch---HH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCccc-----CC
Confidence 000 00 00 00000 00 0000000111111111111 0111122222212 12
Q ss_pred CccccCCCCceeec-ccccCCCCCCCCccccccchhhhhccCCCCeEEEEEecccccC-CHHHHHHHHHHHHhCCCCEEE
Q 012563 230 LPEEYSGIPVFPIG-PFHKYFPASSSSLLSQDQSSISWLDKQAPKSVIYVSFGSVAAI-NETEFLEIAWGLANSRVPFLW 307 (460)
Q Consensus 230 ~~~~~~~~pv~~vG-pl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~-~~~~~~~~~~al~~~~~~~i~ 307 (460)
.++. ++....++| ++...+.. ...+.++..|++. ++++||||+||+... ....+..+++++...+.+++|
T Consensus 203 ~~~~-~~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~ 274 (401)
T cd03784 203 PPPD-WPRFDLVTGYGFRDVPYN-----GPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAIL 274 (401)
T ss_pred CCCC-ccccCcEeCCCCCCCCCC-----CCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEE
Confidence 2333 445577775 44332221 1233446778765 679999999999873 346677899999988999999
Q ss_pred EECCCCCCCchhhccCchhHHhhhCCCceEEeccchHHHhccCCCcceeeccCchhhHHHHhhCCCeeecCcccchhhHH
Q 012563 308 VVRPGLVDGVEWLEALPKGYLEMVDGRGYIVQWAPQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCLADQMVNA 387 (460)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~DQ~~na 387 (460)
+++...... ...++|+++.+|+||.++|+++++ ||||||+||++|++++|||+|++|+..||+.||
T Consensus 275 ~~g~~~~~~------------~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a 340 (401)
T cd03784 275 SLGWGGLGA------------EDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWA 340 (401)
T ss_pred EccCccccc------------cCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCCcHHHH
Confidence 988754110 123456699999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHhhceeEeeCC-ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Q 012563 388 RYVSHVWRVGLHLEG-KLEKKEIETAIRRLMVEAEGQEMRERITCLKKNVD 437 (460)
Q Consensus 388 ~~v~~~lG~G~~~~~-~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~ 437 (460)
+++++ +|+|+.++. .+++++|.++|++++++ + ++++++++++.++
T Consensus 341 ~~~~~-~G~g~~l~~~~~~~~~l~~al~~~l~~---~-~~~~~~~~~~~~~ 386 (401)
T cd03784 341 ARVAE-LGAGPALDPRELTAERLAAALRRLLDP---P-SRRRAAALLRRIR 386 (401)
T ss_pred HHHHH-CCCCCCCCcccCCHHHHHHHHHHHhCH---H-HHHHHHHHHHHHH
Confidence 99999 699999987 78999999999999987 4 5566777777776
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-41 Score=330.23 Aligned_cols=385 Identities=19% Similarity=0.234 Sum_probs=241.0
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCC-CCCC---HHHHHHHHHH
Q 012563 14 GRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNSPNSCNYPHFDFHSISDGLTDP-SAED---STTILITLNA 89 (460)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~ 89 (460)
+|||+++..|+.||++|+++||++|.++||+|+|++++...+... ..|+.|..++....+. .... ....+.....
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve-~ag~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVE-AAGLAFVAYPIRDSELATEDGKFAGVKSFRRLLQ 79 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHH-HhCcceeeccccCChhhhhhhhhhccchhHHHhh
Confidence 599999999999999999999999999999999999965555554 3457777776431111 1111 1111111222
Q ss_pred hcchhHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHHHHhhcCCCeEEEeCccHHHHHHHh-hcccccccCCCCCCC
Q 012563 90 KCMVPFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTHVADEFKLPTIILQTHSVSGYLGIA-AYPFLRDKGYVPIQD 168 (460)
Q Consensus 90 ~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~ 168 (460)
.....+.+.++-+.+. .+|+++.|.....+.+++..++|++.....+........ +.+.....+..+
T Consensus 80 ~~~~~~~~~~~~~~e~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 147 (406)
T COG1819 80 QFKKLIRELLELLREL---------EPDLVVDDARLSLGLAARLLGIPVVGINVAPYTPLPAAGLPLPPVGIAGKLP--- 147 (406)
T ss_pred hhhhhhHHHHHHHHhc---------chhhhhcchhhhhhhhhhhcccchhhhhhhhccCCcccccCccccccccccc---
Confidence 2222233344444333 789999996443333999999999886555333222111 100000000000
Q ss_pred CCCCCccCCCCCCCCCCCCCcccCCCCCcHHHHHHHHhhhc---cCceEEecchHHhhHHHhhcC-c--cccCCCCceee
Q 012563 169 PQSESPVIEYPPLRVKDIPKLETRYPEYNYPLVSAMVNNIK---ASSGMIWNTFEELEQAALSTL-P--EEYSGIPVFPI 242 (460)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~s~~~le~~~~~~~-~--~~~~~~pv~~v 242 (460)
.+.. .+......+....... ......+....+. +...-+..+-+.++..+.+.. . .. ++.-..++
T Consensus 148 ------~~~~-~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~ 218 (406)
T COG1819 148 ------IPLY-PLPPRLVRPLIFARSW-LPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDR-LPFIGPYI 218 (406)
T ss_pred ------cccc-ccChhhccccccchhh-hhhhhhhhhccccccccchHHHhcCCCCccccccccccCCCCC-CCCCcCcc
Confidence 0000 0000000000000000 0000000000000 000001111111111111110 0 01 12227777
Q ss_pred cccccCCCCCCCCccccccchhhhhccCCCCeEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEECCCCCCCchhhcc
Q 012563 243 GPFHKYFPASSSSLLSQDQSSISWLDKQAPKSVIYVSFGSVAAINETEFLEIAWGLANSRVPFLWVVRPGLVDGVEWLEA 322 (460)
Q Consensus 243 Gpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~ 322 (460)
||+...... +...|.. .++++||+|+||.... .+++..+++++..++.++|+.+++ .... ...
T Consensus 219 ~~~~~~~~~----------~~~~~~~--~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~-~~~~---~~~ 281 (406)
T COG1819 219 GPLLGEAAN----------ELPYWIP--ADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGG-ARDT---LVN 281 (406)
T ss_pred ccccccccc----------cCcchhc--CCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccc-cccc---ccc
Confidence 777665432 1334432 4789999999999976 788999999999999999999876 2111 344
Q ss_pred CchhHHhhhCCCceEEeccchHHHhccCCCcceeeccCchhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCC
Q 012563 323 LPKGYLEMVDGRGYIVQWAPQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEG 402 (460)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~vp~~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~ 402 (460)
+|+|+ .+.+|+||.++|+++++ ||||||+|||+|||++|||+|++|...||++||.|+++ +|+|..+..
T Consensus 282 ~p~n~--------~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~-~G~G~~l~~ 350 (406)
T COG1819 282 VPDNV--------IVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEE-LGAGIALPF 350 (406)
T ss_pred CCCce--------EEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHH-cCCceecCc
Confidence 66666 89999999999999999 99999999999999999999999999999999999999 699999987
Q ss_pred -ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 012563 403 -KLEKKEIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVD 455 (460)
Q Consensus 403 -~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 455 (460)
.++++.|+++|+++|+| +.|+++++++++.++. .++..++.+.+-+
T Consensus 351 ~~l~~~~l~~av~~vL~~---~~~~~~~~~~~~~~~~----~~g~~~~a~~le~ 397 (406)
T COG1819 351 EELTEERLRAAVNEVLAD---DSYRRAAERLAEEFKE----EDGPAKAADLLEE 397 (406)
T ss_pred ccCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHhhh----cccHHHHHHHHHH
Confidence 89999999999999999 9999999999999994 4554444444443
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=1.7e-40 Score=338.50 Aligned_cols=390 Identities=32% Similarity=0.454 Sum_probs=254.4
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCC-----------ceEEeCCCCCCCCCCCC---
Q 012563 14 GRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNSPNSCNYPH-----------FDFHSISDGLTDPSAED--- 79 (460)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~--- 79 (460)
+.+++++++|+.||++|+..+|+.|+++||+||++++............ ..+...++.++......
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIPDGLPEGWEDDDLD 84 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcccceeeeeeecChHHhhhhhhhhccchHHHHHH
Confidence 6788899999999999999999999999999999998654433221011 11111111222222211
Q ss_pred HHHHHHHHHHhcchhHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH-HHhhcC-CCeEEEeCccHHHHHHHhhccc
Q 012563 80 STTILITLNAKCMVPFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH-VADEFK-LPTIILQTHSVSGYLGIAAYPF 157 (460)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~-~A~~lg-iP~v~~~~~~~~~~~~~~~~~~ 157 (460)
.......+...|...+++....+...... ++|++|+|.+..+.. +|...+ ++...+.+..+.......
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~---- 154 (496)
T KOG1192|consen 85 ISESLLELNKTCEDLLRDPLEKLLLLKSE------KFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGL---- 154 (496)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHhhcC------CccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCC----
Confidence 11113455566666666655554443322 499999999866666 776664 888887777666554433
Q ss_pred ccccCCCCCCCCCC-------CCccCCCCCCCCCCCCCcccCCCC--CcHHHH-----------HHHHhhhccCceEEec
Q 012563 158 LRDKGYVPIQDPQS-------ESPVIEYPPLRVKDIPKLETRYPE--YNYPLV-----------SAMVNNIKASSGMIWN 217 (460)
Q Consensus 158 ~~~~~~~p~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----------~~~~~~~~~~~~~l~~ 217 (460)
+....+.|...... ..+..++ ....++........ ...... ....+.+.+.+..++|
T Consensus 155 ~~~~~~~p~~~~~~~~~~~~~~~~~~n~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln 231 (496)
T KOG1192|consen 155 PSPLSYVPSPFSLSSGDDMSFPERVPNL---IKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLN 231 (496)
T ss_pred cCcccccCcccCccccccCcHHHHHHHH---HHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEc
Confidence 22333444332111 1111110 00000000000000 000000 1111233444455556
Q ss_pred chHHhhHHHhhcCccccCCCCceeecccccCCCCCCCCccccccchhhhhccCCCC--eEEEEEecccc---cCCHHHHH
Q 012563 218 TFEELEQAALSTLPEEYSGIPVFPIGPFHKYFPASSSSLLSQDQSSISWLDKQAPK--SVIYVSFGSVA---AINETEFL 292 (460)
Q Consensus 218 s~~~le~~~~~~~~~~~~~~pv~~vGpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~v~vs~GS~~---~~~~~~~~ 292 (460)
+.+.++.. .++ ...++++|||+...... .... ...+|++..+.. ++|||||||+. .++.++..
T Consensus 232 ~~~~~~~~----~~~--~~~~v~~IG~l~~~~~~----~~~~--~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~ 299 (496)
T KOG1192|consen 232 SNPLLDFE----PRP--LLPKVIPIGPLHVKDSK----QKSP--LPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKK 299 (496)
T ss_pred cCcccCCC----CCC--CCCCceEECcEEecCcc----cccc--ccHHHHHHHhhccCCeEEEECCcccccccCCHHHHH
Confidence 55544321 122 23559999999987432 1111 246787776655 99999999999 68999999
Q ss_pred HHHHHHHhC-CCCEEEEECCCCCCCchhhccCchhHHhhhCCCceEEeccchHHH-hccCCCcceeeccCchhhHHHHhh
Q 012563 293 EIAWGLANS-RVPFLWVVRPGLVDGVEWLEALPKGYLEMVDGRGYIVQWAPQQQV-LAHPAVGGFLTHSGWNSTLESICE 370 (460)
Q Consensus 293 ~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~l-L~~~~~~~~I~HGG~~s~~eal~~ 370 (460)
.++.+++.+ ++.|+|++...... .+++++.++.++|+...+|+||.++ |.|+++++||||||+|||+|++++
T Consensus 300 ~l~~~l~~~~~~~FiW~~~~~~~~------~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~ 373 (496)
T KOG1192|consen 300 ELAKALESLQGVTFLWKYRPDDSI------YFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYS 373 (496)
T ss_pred HHHHHHHhCCCceEEEEecCCcch------hhhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhc
Confidence 999999999 88899999875311 1334443333456788899999998 599999999999999999999999
Q ss_pred CCCeeecCcccchhhHHHHHHHhhceeEeeCC-ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Q 012563 371 GVPMICQPCLADQMVNARYVSHVWRVGLHLEG-KLEKKEIETAIRRLMVEAEGQEMRERITCLKKNVDA 438 (460)
Q Consensus 371 GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~-~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~ 438 (460)
|||+|++|+++||+.||++++++ |.|..+.. +++.+.+.+++.+++++ ++|+++++++++.+++
T Consensus 374 GvP~v~~Plf~DQ~~Na~~i~~~-g~~~v~~~~~~~~~~~~~~~~~il~~---~~y~~~~~~l~~~~~~ 438 (496)
T KOG1192|consen 374 GVPMVCVPLFGDQPLNARLLVRH-GGGGVLDKRDLVSEELLEAIKEILEN---EEYKEAAKRLSEILRD 438 (496)
T ss_pred CCceecCCccccchhHHHHHHhC-CCEEEEehhhcCcHHHHHHHHHHHcC---hHHHHHHHHHHHHHHc
Confidence 99999999999999999999997 66666655 67766699999999999 8999999999998873
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.97 E-value=4.9e-28 Score=233.57 Aligned_cols=333 Identities=15% Similarity=0.163 Sum_probs=208.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCCCCC-CCCCCceEEeCCC-CCCCCCCCCHHHHHHHHHHhcch
Q 012563 16 RVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNSPNS-CNYPHFDFHSISD-GLTDPSAEDSTTILITLNAKCMV 93 (460)
Q Consensus 16 ~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 93 (460)
+|++.+.|+.||+.|.+++|++|.++||+|+|++++...+.. ....++.++.++. .+... .....+.........
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~ 79 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSGKLRRY---FDLKNIKDPFLVMKG 79 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcccCCcEEEEeccCcCCC---chHHHHHHHHHHHHH
Confidence 688999999999999999999999999999999986544332 2234788887763 22211 112222222111111
Q ss_pred hHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchHH--H-HHhhcCCCeEEEeCccHHHHHHHhhcccccccCCCCCCCCC
Q 012563 94 PFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFT--H-VADEFKLPTIILQTHSVSGYLGIAAYPFLRDKGYVPIQDPQ 170 (460)
Q Consensus 94 ~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~--~-~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 170 (460)
+...+.-+.+. +||+||+....... . +|..+++|++....+...
T Consensus 80 -~~~~~~i~~~~---------kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~~----------------------- 126 (352)
T PRK12446 80 -VMDAYVRIRKL---------KPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMTP----------------------- 126 (352)
T ss_pred -HHHHHHHHHhc---------CCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCCc-----------------------
Confidence 11122222222 89999998755543 3 999999999985444111
Q ss_pred CCCccCCCCCCCCCCCCCcccCCCCCcHHHHHHHHhhhccCceEEecchHHhhHHHhhcCccccCC-CCceeec-ccccC
Q 012563 171 SESPVIEYPPLRVKDIPKLETRYPEYNYPLVSAMVNNIKASSGMIWNTFEELEQAALSTLPEEYSG-IPVFPIG-PFHKY 248 (460)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~-~pv~~vG-pl~~~ 248 (460)
....+.... .++. ++.++++-. .. ++ ..++++| |+...
T Consensus 127 ----------------------------g~~nr~~~~--~a~~-v~~~f~~~~--------~~-~~~~k~~~tG~Pvr~~ 166 (352)
T PRK12446 127 ----------------------------GLANKIALR--FASK-IFVTFEEAA--------KH-LPKEKVIYTGSPVREE 166 (352)
T ss_pred ----------------------------cHHHHHHHH--hhCE-EEEEccchh--------hh-CCCCCeEEECCcCCcc
Confidence 111111111 1112 233443321 11 33 3488999 55443
Q ss_pred CCCCCCCccccccchhhhhccCCCCeEEEEEecccccCCH-HHHHHHHHHHHhCCCCEEEEECCCCCCCchhhccCchhH
Q 012563 249 FPASSSSLLSQDQSSISWLDKQAPKSVIYVSFGSVAAINE-TEFLEIAWGLANSRVPFLWVVRPGLVDGVEWLEALPKGY 327 (460)
Q Consensus 249 ~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 327 (460)
... .......+.+...+++++|+|+.||...... +.+..++..+. .+.+++|.++.+..+ +..
T Consensus 167 ~~~------~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~-~~~~vv~~~G~~~~~---------~~~ 230 (352)
T PRK12446 167 VLK------GNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELL-LKYQIVHLCGKGNLD---------DSL 230 (352)
T ss_pred ccc------ccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhc-cCcEEEEEeCCchHH---------HHH
Confidence 211 1111122223333568999999999997332 22333444442 247889988865311 111
Q ss_pred HhhhCCCceEEecc-c-hHHHhccCCCcceeeccCchhhHHHHhhCCCeeecCcc-----cchhhHHHHHHHhhceeEee
Q 012563 328 LEMVDGRGYIVQWA-P-QQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCL-----ADQMVNARYVSHVWRVGLHL 400 (460)
Q Consensus 328 ~~~~~~~~~~~~~v-p-~~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~-----~DQ~~na~~v~~~lG~G~~~ 400 (460)
... .+..+..|+ + ..+++..+++ +|||||.+|++|++++|+|+|++|+. .||..||+++++ .|+|..+
T Consensus 231 -~~~-~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~-~g~~~~l 305 (352)
T PRK12446 231 -QNK-EGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFER-QGYASVL 305 (352)
T ss_pred -hhc-CCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHH-CCCEEEc
Confidence 111 233566887 5 4569999999 99999999999999999999999984 489999999999 5999999
Q ss_pred CC-ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 012563 401 EG-KLEKKEIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHILS 459 (460)
Q Consensus 401 ~~-~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
.. +++++.|.+++.++++|. +.+++++++++ ..++.+++++.+++
T Consensus 306 ~~~~~~~~~l~~~l~~ll~~~--~~~~~~~~~~~------------~~~aa~~i~~~i~~ 351 (352)
T PRK12446 306 YEEDVTVNSLIKHVEELSHNN--EKYKTALKKYN------------GKEAIQTIIDHISE 351 (352)
T ss_pred chhcCCHHHHHHHHHHHHcCH--HHHHHHHHHcC------------CCCHHHHHHHHHHh
Confidence 77 899999999999999872 35555444433 33566666666654
No 29
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.94 E-value=5.7e-25 Score=209.57 Aligned_cols=306 Identities=20% Similarity=0.231 Sum_probs=196.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCC-eEEEEeCCCCCCC-CCCCCCceEEeCCCCCCCCCCCCHHHHHHHHHHhcc
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGF-SITIIHTKFNSPN-SCNYPHFDFHSISDGLTDPSAEDSTTILITLNAKCM 92 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh-~V~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (460)
|+|++...++-||+.|.++|+++|.++|+ +|.++.+....+. .....++.++.++.+-...... ...+......+.
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~~~~~~~~I~~~~~~~~~~--~~~~~~~~~~~~ 78 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQYGIEFELIPSGGLRRKGS--LKLLKAPFKLLK 78 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeeccccCceEEEEecccccccCc--HHHHHHHHHHHH
Confidence 57889999999999999999999999999 5888866544433 2334478888887432222111 111111111211
Q ss_pred h--hHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH---HHhhcCCCeEEEeCccHHHHHHHhhcccccccCCCCCC
Q 012563 93 V--PFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH---VADEFKLPTIILQTHSVSGYLGIAAYPFLRDKGYVPIQ 167 (460)
Q Consensus 93 ~--~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~---~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 167 (460)
. ..+..++++ +||+||....++..+ +|..+|||.+..-+......
T Consensus 79 ~~~~a~~il~~~------------kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~~G~------------------ 128 (357)
T COG0707 79 GVLQARKILKKL------------KPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAVPGL------------------ 128 (357)
T ss_pred HHHHHHHHHHHc------------CCCEEEecCCccccHHHHHHHhCCCCEEEEecCCCcch------------------
Confidence 1 123344444 899999977666555 88899999998544311111
Q ss_pred CCCCCCccCCCCCCCCCCCCCcccCCCCCcHHHHHHHHhhhccCceEEecchHHhhHHHhhcCccccCC-CCceeec-cc
Q 012563 168 DPQSESPVIEYPPLRVKDIPKLETRYPEYNYPLVSAMVNNIKASSGMIWNTFEELEQAALSTLPEEYSG-IPVFPIG-PF 245 (460)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~-~pv~~vG-pl 245 (460)
..+..... + ..+..+++..+ .. .+ ..++++| |+
T Consensus 129 ---------------------------------ank~~~~~--a-~~V~~~f~~~~--------~~-~~~~~~~~tG~Pv 163 (357)
T COG0707 129 ---------------------------------ANKILSKF--A-KKVASAFPKLE--------AG-VKPENVVVTGIPV 163 (357)
T ss_pred ---------------------------------hHHHhHHh--h-ceeeecccccc--------cc-CCCCceEEecCcc
Confidence 11111111 1 11334443311 10 11 2388888 77
Q ss_pred ccCCCCCCCCccccccchhhhhccCCCCeEEEEEecccccCCH-HHHHHHHHHHHhCCCCEEEEECCCCCCCchhhccCc
Q 012563 246 HKYFPASSSSLLSQDQSSISWLDKQAPKSVIYVSFGSVAAINE-TEFLEIAWGLANSRVPFLWVVRPGLVDGVEWLEALP 324 (460)
Q Consensus 246 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~ 324 (460)
...... .+.. ....... .++++|+|+.||++...- +.+..+...+.+ +.++++.++.+..
T Consensus 164 r~~~~~-----~~~~--~~~~~~~-~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~~---------- 224 (357)
T COG0707 164 RPEFEE-----LPAA--EVRKDGR-LDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKNDL---------- 224 (357)
T ss_pred cHHhhc-----cchh--hhhhhcc-CCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcchH----------
Confidence 654321 1111 1122222 268999999999997221 122223333332 4677787776531
Q ss_pred hhHHhhhC-CC-ceEEeccchH-HHhccCCCcceeeccCchhhHHHHhhCCCeeecCcc----cchhhHHHHHHHhhcee
Q 012563 325 KGYLEMVD-GR-GYIVQWAPQQ-QVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCL----ADQMVNARYVSHVWRVG 397 (460)
Q Consensus 325 ~~~~~~~~-~~-~~~~~~vp~~-~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~----~DQ~~na~~v~~~lG~G 397 (460)
+.+...+. .+ +.+..|+.++ .+|+.+++ +||++|.+|+.|++++|+|+|.+|.. .||..||+.++++ |.|
T Consensus 225 ~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~-gaa 301 (357)
T COG0707 225 EELKSAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKA-GAA 301 (357)
T ss_pred HHHHHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhC-CCE
Confidence 22222222 12 5778998874 49999999 99999999999999999999999983 3899999999996 999
Q ss_pred EeeCC-ccCHHHHHHHHHHHhcc
Q 012563 398 LHLEG-KLEKKEIETAIRRLMVE 419 (460)
Q Consensus 398 ~~~~~-~~~~~~l~~~i~~ll~~ 419 (460)
..++. ++|.+.|.+.|.+++++
T Consensus 302 ~~i~~~~lt~~~l~~~i~~l~~~ 324 (357)
T COG0707 302 LVIRQSELTPEKLAELILRLLSN 324 (357)
T ss_pred EEeccccCCHHHHHHHHHHHhcC
Confidence 99998 89999999999999997
No 30
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.94 E-value=1.5e-25 Score=215.21 Aligned_cols=302 Identities=16% Similarity=0.186 Sum_probs=189.6
Q ss_pred cEEEEEcCC-CCCChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCC--CCCHHHHHHHH---H
Q 012563 15 RRVILFPLP-FQGHINPMLQLGSILYSKGFSITIIHTKFNSPNSCNYPHFDFHSISDGLTDPS--AEDSTTILITL---N 88 (460)
Q Consensus 15 ~~il~~~~~-~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~ 88 (460)
|||++...+ +.||+.++++||++| |||+|+|++.+....... .. +.+..+++-..... ..+....+... .
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLK-PR-FPVREIPGLGPIQENGRLDRWKTVRNNIRWL 76 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhc-cc-cCEEEccCceEeccCCccchHHHHHHHHHhh
Confidence 899999888 789999999999999 699999999864433332 22 45666653211111 11111111111 1
Q ss_pred HhcchhHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH-HHhhcCCCeEEEeCccHHHHHHHhhcccccccCCCCCC
Q 012563 89 AKCMVPFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH-VADEFKLPTIILQTHSVSGYLGIAAYPFLRDKGYVPIQ 167 (460)
Q Consensus 89 ~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~-~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 167 (460)
......+++..+.+.+. +||+||+|. .+.+. +|+..|||++.+........... ..
T Consensus 77 ~~~~~~~~~~~~~l~~~---------~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~~~~~----------~~--- 133 (318)
T PF13528_consen 77 ARLARRIRREIRWLREF---------RPDLVISDF-YPLAALAARRAGIPVIVISNQYWFLHPNF----------WL--- 133 (318)
T ss_pred HHHHHHHHHHHHHHHhc---------CCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHcccccC----------Cc---
Confidence 11222333344444333 899999994 55566 99999999999877632221000 00
Q ss_pred CCCCCCccCCCCCCCCCCCCCcccCCCCCcHHHHHHHHhh--hccCceEEecchHHhhHHHhhcCccccCCCCceeeccc
Q 012563 168 DPQSESPVIEYPPLRVKDIPKLETRYPEYNYPLVSAMVNN--IKASSGMIWNTFEELEQAALSTLPEEYSGIPVFPIGPF 245 (460)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~s~~~le~~~~~~~~~~~~~~pv~~vGpl 245 (460)
...........+.... ...+...+.-++. .. .+ ....+.++||+
T Consensus 134 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~-------~~--~~~~~~~~~p~ 179 (318)
T PF13528_consen 134 ------------------------PWDQDFGRLIERYIDRYHFPPADRRLALSFY-PP-------LP--PFFRVPFVGPI 179 (318)
T ss_pred ------------------------chhhhHHHHHHHhhhhccCCcccceecCCcc-cc-------cc--ccccccccCch
Confidence 0011112222232221 2333333333332 10 00 01236678877
Q ss_pred ccCCCCCCCCccccccchhhhhccCCCCeEEEEEecccccCCHHHHHHHHHHHHhCC-CCEEEEECCCCCCCchhhccCc
Q 012563 246 HKYFPASSSSLLSQDQSSISWLDKQAPKSVIYVSFGSVAAINETEFLEIAWGLANSR-VPFLWVVRPGLVDGVEWLEALP 324 (460)
Q Consensus 246 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~~~ 324 (460)
...... +.- ..+++.|+|++|..... .++++++..+ +++++. +.... ...
T Consensus 180 ~~~~~~-------------~~~--~~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~~~------~~~- 230 (318)
T PF13528_consen 180 IRPEIR-------------ELP--PEDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPNAA------DPR- 230 (318)
T ss_pred hccccc-------------ccC--CCCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCCcc------ccc-
Confidence 654321 010 12457799999997752 5567777666 566555 44320 111
Q ss_pred hhHHhhhCCCceEEecc--chHHHhccCCCcceeeccCchhhHHHHhhCCCeeecCc--ccchhhHHHHHHHhhceeEee
Q 012563 325 KGYLEMVDGRGYIVQWA--PQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPC--LADQMVNARYVSHVWRVGLHL 400 (460)
Q Consensus 325 ~~~~~~~~~~~~~~~~v--p~~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~--~~DQ~~na~~v~~~lG~G~~~ 400 (460)
.+|+.+..|. +..++|..|++ +|||||+||++|++++|+|+|++|. ..||..||+++++ +|+|..+
T Consensus 231 -------~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~-~G~~~~~ 300 (318)
T PF13528_consen 231 -------PGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEE-LGLGIVL 300 (318)
T ss_pred -------CCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHH-CCCeEEc
Confidence 4555888876 45779999999 9999999999999999999999999 7899999999999 6999999
Q ss_pred CC-ccCHHHHHHHHHHH
Q 012563 401 EG-KLEKKEIETAIRRL 416 (460)
Q Consensus 401 ~~-~~~~~~l~~~i~~l 416 (460)
+. +++++.|.+.|+++
T Consensus 301 ~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 301 SQEDLTPERLAEFLERL 317 (318)
T ss_pred ccccCCHHHHHHHHhcC
Confidence 87 89999999999864
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.90 E-value=5.5e-22 Score=190.20 Aligned_cols=123 Identities=21% Similarity=0.202 Sum_probs=89.6
Q ss_pred CCeEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEECCCCCCCchhhccCchhHHhhhCCCceEEeccc--hHHHhcc
Q 012563 272 PKSVIYVSFGSVAAINETEFLEIAWGLANSRVPFLWVVRPGLVDGVEWLEALPKGYLEMVDGRGYIVQWAP--QQQVLAH 349 (460)
Q Consensus 272 ~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp--~~~lL~~ 349 (460)
+++.|+|.+|+... ..+++++.+.+. +.+++..... ..+ ..++|+.+..|.| ..++|+.
T Consensus 187 ~~~~iLv~~g~~~~------~~l~~~l~~~~~-~~~i~~~~~~--------~~~----~~~~~v~~~~~~~~~~~~~l~~ 247 (321)
T TIGR00661 187 GEDYILVYIGFEYR------YKILELLGKIAN-VKFVCYSYEV--------AKN----SYNENVEIRRITTDNFKELIKN 247 (321)
T ss_pred CCCcEEEECCcCCH------HHHHHHHHhCCC-eEEEEeCCCC--------Ccc----ccCCCEEEEECChHHHHHHHHh
Confidence 45778888888543 345666766553 2233222211 111 1235668889997 4568899
Q ss_pred CCCcceeeccCchhhHHHHhhCCCeeecCccc--chhhHHHHHHHhhceeEeeCC-ccCHHHHHHHHHHHhcc
Q 012563 350 PAVGGFLTHSGWNSTLESICEGVPMICQPCLA--DQMVNARYVSHVWRVGLHLEG-KLEKKEIETAIRRLMVE 419 (460)
Q Consensus 350 ~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~lG~G~~~~~-~~~~~~l~~~i~~ll~~ 419 (460)
|++ +|||||++|++|++++|+|++++|... ||..||+.+++ .|+|+.++. ++ ++.+++.++++|
T Consensus 248 ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~-~g~~~~l~~~~~---~~~~~~~~~~~~ 314 (321)
T TIGR00661 248 AEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLED-LGCGIALEYKEL---RLLEAILDIRNM 314 (321)
T ss_pred CCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHH-CCCEEEcChhhH---HHHHHHHhcccc
Confidence 988 999999999999999999999999955 89999999999 599999986 44 666677777776
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.87 E-value=3.7e-19 Score=173.80 Aligned_cols=343 Identities=15% Similarity=0.112 Sum_probs=200.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCC-CCCCCCCCceEEeCCCC-CCCCCCCCHHHHHHHHHHhcc
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNS-PNSCNYPHFDFHSISDG-LTDPSAEDSTTILITLNAKCM 92 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 92 (460)
|||+|+..+..||...++.||++|.++||+|++++.+... .......+++++.++.. .... .....+...... .
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~l~~~~~~-~ 77 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPKAGIEFHFIPSGGLRRK---GSLANLKAPFKL-L 77 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhccccCCCcEEEEeccCcCCC---ChHHHHHHHHHH-H
Confidence 8999999988999999999999999999999999985421 11112247777777632 1111 111111111111 1
Q ss_pred hhHHHHHHHHhhcCCCCCCCCCCceEEEEcCc--chHHH-HHhhcCCCeEEEeCccHHHHHHHhhcccccccCCCCCCCC
Q 012563 93 VPFRNCLAKLVSNTNNNNAQEDSVACLITDFL--WQFTH-VADEFKLPTIILQTHSVSGYLGIAAYPFLRDKGYVPIQDP 169 (460)
Q Consensus 93 ~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~--~~~~~-~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 169 (460)
..+....+.+.+. +||+|++... ...+. ++...++|+|.......
T Consensus 78 ~~~~~~~~~ik~~---------~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~----------------------- 125 (357)
T PRK00726 78 KGVLQARKILKRF---------KPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNAV----------------------- 125 (357)
T ss_pred HHHHHHHHHHHhc---------CCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCCC-----------------------
Confidence 1112222222222 7999999963 23334 78888999985311100
Q ss_pred CCCCccCCCCCCCCCCCCCcccCCCCCcHHHHHHHHhhhccCceEEecchHHhhHHHhhcCccccCCCCceeecccccCC
Q 012563 170 QSESPVIEYPPLRVKDIPKLETRYPEYNYPLVSAMVNNIKASSGMIWNTFEELEQAALSTLPEEYSGIPVFPIGPFHKYF 249 (460)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~pv~~vGpl~~~~ 249 (460)
.....++.. ..++.++..+...+. + . -+.+++++|......
T Consensus 126 ----------------------------~~~~~r~~~--~~~d~ii~~~~~~~~----~--~---~~~~i~vi~n~v~~~ 166 (357)
T PRK00726 126 ----------------------------PGLANKLLA--RFAKKVATAFPGAFP----E--F---FKPKAVVTGNPVREE 166 (357)
T ss_pred ----------------------------ccHHHHHHH--HHhchheECchhhhh----c--c---CCCCEEEECCCCChH
Confidence 000111111 122333333322110 0 1 125588888433221
Q ss_pred CCCCCCccccccchhhhhccCCCCeEEEEEecccccCCHHHHHHHHHHHHhCCC--CEEEEECCCCCCCchhhccCchhH
Q 012563 250 PASSSSLLSQDQSSISWLDKQAPKSVIYVSFGSVAAINETEFLEIAWGLANSRV--PFLWVVRPGLVDGVEWLEALPKGY 327 (460)
Q Consensus 250 ~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~ 327 (460)
.. . +.. ..+-++..+++++|++..|+... ......+.+++.+... .+++.++.... +.+.+.+
T Consensus 167 ~~---~--~~~--~~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~~~~~~~~~~~~G~g~~------~~~~~~~ 231 (357)
T PRK00726 167 IL---A--LAA--PPARLAGREGKPTLLVVGGSQGA--RVLNEAVPEALALLPEALQVIHQTGKGDL------EEVRAAY 231 (357)
T ss_pred hh---c--ccc--hhhhccCCCCCeEEEEECCcHhH--HHHHHHHHHHHHHhhhCcEEEEEcCCCcH------HHHHHHh
Confidence 11 0 000 01111222345677766666432 1122223366655433 34555665431 1111112
Q ss_pred HhhhCCCceEEeccc-hHHHhccCCCcceeeccCchhhHHHHhhCCCeeecCc----ccchhhHHHHHHHhhceeEeeCC
Q 012563 328 LEMVDGRGYIVQWAP-QQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPC----LADQMVNARYVSHVWRVGLHLEG 402 (460)
Q Consensus 328 ~~~~~~~~~~~~~vp-~~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~----~~DQ~~na~~v~~~lG~G~~~~~ 402 (460)
+ ..-++.+..|+. ..++++.+++ +|+|+|.++++||+++|+|+|++|. .+||..|+..+.+. |.|..++.
T Consensus 232 -~-~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~-~~g~~~~~ 306 (357)
T PRK00726 232 -A-AGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDA-GAALLIPQ 306 (357)
T ss_pred -h-cCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHC-CCEEEEEc
Confidence 1 222367789985 4679999999 9999999999999999999999997 46899999999995 99999976
Q ss_pred -ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 012563 403 -KLEKKEIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHILS 459 (460)
Q Consensus 403 -~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
+++++.|.++|.++++| ++.+++..+-+.... +..+..+.++.+.+.+.+
T Consensus 307 ~~~~~~~l~~~i~~ll~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 357 (357)
T PRK00726 307 SDLTPEKLAEKLLELLSD---PERLEAMAEAARALG----KPDAAERLADLIEELARK 357 (357)
T ss_pred ccCCHHHHHHHHHHHHcC---HHHHHHHHHHHHhcC----CcCHHHHHHHHHHHHhhC
Confidence 67899999999999998 555544444433332 566777777777776653
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.81 E-value=1.7e-17 Score=161.69 Aligned_cols=312 Identities=17% Similarity=0.131 Sum_probs=181.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCCCC-CCCCCCceEEeCCCC-CCCCCCCCHHHHHHHHHHhcch
Q 012563 16 RVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNSPN-SCNYPHFDFHSISDG-LTDPSAEDSTTILITLNAKCMV 93 (460)
Q Consensus 16 ~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 93 (460)
+|++.+.++.||....+.||+.|.++||+|++++....... .....+++++.++-. .... .....+...... ..
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~ 76 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEARLVPKAGIPLHTIPVGGLRRK---GSLKKLKAPFKL-LK 76 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhcccccCCceEEEEecCcCCC---ChHHHHHHHHHH-HH
Confidence 58899999999999999999999999999999987532211 112235777766621 1111 111111111110 00
Q ss_pred hHHHHHHHHhhcCCCCCCCCCCceEEEEcCc--chHHH-HHhhcCCCeEEEeCccHHHHHHHhhcccccccCCCCCCCCC
Q 012563 94 PFRNCLAKLVSNTNNNNAQEDSVACLITDFL--WQFTH-VADEFKLPTIILQTHSVSGYLGIAAYPFLRDKGYVPIQDPQ 170 (460)
Q Consensus 94 ~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~--~~~~~-~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 170 (460)
.+. .+.++.+.. +||+|++... ...+. +|...|+|++......
T Consensus 77 ~~~-~~~~~i~~~--------~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~------------------------- 122 (350)
T cd03785 77 GVL-QARKILKKF--------KPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNA------------------------- 122 (350)
T ss_pred HHH-HHHHHHHhc--------CCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCC-------------------------
Confidence 111 122222221 8999998753 23344 8888899998632110
Q ss_pred CCCccCCCCCCCCCCCCCcccCCCCCcHHHHHHHHhhhccCceEEecchHHhhHHHhhcCccccCCCCceeecccccCCC
Q 012563 171 SESPVIEYPPLRVKDIPKLETRYPEYNYPLVSAMVNNIKASSGMIWNTFEELEQAALSTLPEEYSGIPVFPIGPFHKYFP 250 (460)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~pv~~vGpl~~~~~ 250 (460)
. .....+. ....++.++..+....+. . .+.++.++|.......
T Consensus 123 ----------------------~----~~~~~~~--~~~~~~~vi~~s~~~~~~--------~-~~~~~~~i~n~v~~~~ 165 (350)
T cd03785 123 ----------------------V----PGLANRL--LARFADRVALSFPETAKY--------F-PKDKAVVTGNPVREEI 165 (350)
T ss_pred ----------------------C----ccHHHHH--HHHhhCEEEEcchhhhhc--------C-CCCcEEEECCCCchHH
Confidence 0 0001111 112245555544432221 0 1245777774332111
Q ss_pred CCCCCccccccchhhhhccCCCCeEEEEEecccccCC-HHHHHHHHHHHHhCCCCEEEEECCCCCCCchhhccCchhHHh
Q 012563 251 ASSSSLLSQDQSSISWLDKQAPKSVIYVSFGSVAAIN-ETEFLEIAWGLANSRVPFLWVVRPGLVDGVEWLEALPKGYLE 329 (460)
Q Consensus 251 ~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 329 (460)
. . +.. . .+.+...+++++|++..|+..... .+.+...+..+.+.+..+++.++... .+.+.+.+.+
T Consensus 166 ~---~--~~~-~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~------~~~l~~~~~~ 232 (350)
T cd03785 166 L---A--LDR-E-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGD------LEEVKKAYEE 232 (350)
T ss_pred h---h--hhh-h-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCcc------HHHHHHHHhc
Confidence 0 0 010 0 222222335667777667654311 11222333334322344555665542 1112222222
Q ss_pred hhCCCceEEecc-chHHHhccCCCcceeeccCchhhHHHHhhCCCeeecCc----ccchhhHHHHHHHhhceeEeeCC-c
Q 012563 330 MVDGRGYIVQWA-PQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPC----LADQMVNARYVSHVWRVGLHLEG-K 403 (460)
Q Consensus 330 ~~~~~~~~~~~v-p~~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~----~~DQ~~na~~v~~~lG~G~~~~~-~ 403 (460)
. .+|+.+..|+ +..++|+.+++ +|+++|.+|+.||+++|+|+|++|. ..+|..|++.+.+. |.|..++. .
T Consensus 233 ~-~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~-g~g~~v~~~~ 308 (350)
T cd03785 233 L-GVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKA-GAAVLIPQEE 308 (350)
T ss_pred c-CCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhC-CCEEEEecCC
Confidence 2 3678888998 45779999999 9999999999999999999999986 46799999999994 99999986 4
Q ss_pred cCHHHHHHHHHHHhcc
Q 012563 404 LEKKEIETAIRRLMVE 419 (460)
Q Consensus 404 ~~~~~l~~~i~~ll~~ 419 (460)
.+.++|.++|.++++|
T Consensus 309 ~~~~~l~~~i~~ll~~ 324 (350)
T cd03785 309 LTPERLAAALLELLSD 324 (350)
T ss_pred CCHHHHHHHHHHHhcC
Confidence 6999999999999987
No 34
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.78 E-value=6.3e-17 Score=147.10 Aligned_cols=334 Identities=16% Similarity=0.137 Sum_probs=199.1
Q ss_pred CCCcEEEEEcCC--CCCChHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCC-CCCC---HHHH
Q 012563 12 RNGRRVILFPLP--FQGHINPMLQLGSILYSK--GFSITIIHTKFNSPNSCNYPHFDFHSISDGLTDP-SAED---STTI 83 (460)
Q Consensus 12 ~~~~~il~~~~~--~~GHv~p~l~lA~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~ 83 (460)
.+.+||+|+++- +.||+..++.+|+.|++. |.+|++++.........-..|++|+.+|.-.... .+.+ ...-
T Consensus 7 ~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~~~gVd~V~LPsl~k~~~G~~~~~d~~~~ 86 (400)
T COG4671 7 SKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPGPAGVDFVKLPSLIKGDNGEYGLVDLDGD 86 (400)
T ss_pred hccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCCcccCceEecCceEecCCCceeeeecCCC
Confidence 345699999987 669999999999999998 9999999997766666655799999999422222 1111 1111
Q ss_pred HHHHHHhcchhHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHHHHhhcCCCeEEEeCccHHHHHHHhhcccccccCC
Q 012563 84 LITLNAKCMVPFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTHVADEFKLPTIILQTHSVSGYLGIAAYPFLRDKGY 163 (460)
Q Consensus 84 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~ 163 (460)
+..+.+.-...+....+.+ +||++|+|.+ +.+. -.++ .|+. .+.. ..+
T Consensus 87 l~e~~~~Rs~lil~t~~~f------------kPDi~IVd~~-P~Gl-r~EL-~ptL-----------~yl~-----~~~- 134 (400)
T COG4671 87 LEETKKLRSQLILSTAETF------------KPDIFIVDKF-PFGL-RFEL-LPTL-----------EYLK-----TTG- 134 (400)
T ss_pred HHHHHHHHHHHHHHHHHhc------------CCCEEEEecc-ccch-hhhh-hHHH-----------HHHh-----hcC-
Confidence 2333332233344444444 8999999965 4443 1111 0110 1100 000
Q ss_pred CCCCCCCCCCccCCCCCCCCCCC---CCcc--cCCCCCcHHHHHHHHhhhccCceEEecchHHhhHHHhhc-CccccCCC
Q 012563 164 VPIQDPQSESPVIEYPPLRVKDI---PKLE--TRYPEYNYPLVSAMVNNIKASSGMIWNTFEELEQAALST-LPEEYSGI 237 (460)
Q Consensus 164 ~p~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~-~~~~~~~~ 237 (460)
+ .. -+.++++ +... .++........++.+ +.+++...|.+-.+.-.. ..+. ...
T Consensus 135 -t-------~~-----vL~lr~i~D~p~~~~~~w~~~~~~~~I~r~y------D~V~v~GdP~f~d~~~~~~~~~~-i~~ 194 (400)
T COG4671 135 -T-------RL-----VLGLRSIRDIPQELEADWRRAETVRLINRFY------DLVLVYGDPDFYDPLTEFPFAPA-IRA 194 (400)
T ss_pred -C-------cc-----eeehHhhhhchhhhccchhhhHHHHHHHHhh------eEEEEecCccccChhhcCCccHh-hhh
Confidence 0 00 0000110 1000 012222222333332 244444444432110000 0111 223
Q ss_pred CceeecccccCCCCCCCCccccccchhhhhccCCCCeEEEEEecccccCCHHHHHHHHHHHHh-CCCC--EEEEECCCCC
Q 012563 238 PVFPIGPFHKYFPASSSSLLSQDQSSISWLDKQAPKSVIYVSFGSVAAINETEFLEIAWGLAN-SRVP--FLWVVRPGLV 314 (460)
Q Consensus 238 pv~~vGpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~-~~~~--~i~~~~~~~~ 314 (460)
.+.|+|.+ ..+ .+ ....|.. | .+++.-|+||-|.... ..+.+...++|..- .+.+ .++++++.-
T Consensus 195 k~~ytG~v-q~~-~~-~~~~p~~-----~---~pE~~~Ilvs~GGG~d-G~eLi~~~l~A~~~l~~l~~~~~ivtGP~M- 261 (400)
T COG4671 195 KMRYTGFV-QRS-LP-HLPLPPH-----E---APEGFDILVSVGGGAD-GAELIETALAAAQLLAGLNHKWLIVTGPFM- 261 (400)
T ss_pred heeEeEEe-ecc-Cc-CCCCCCc-----C---CCccceEEEecCCChh-hHHHHHHHHHHhhhCCCCCcceEEEeCCCC-
Confidence 49999988 221 10 1112221 1 1456778889888654 45566666666554 3433 445555431
Q ss_pred CCchhhccCchhHHhhhC--CCceEEeccch-HHHhccCCCcceeeccCchhhHHHHhhCCCeeecCcc---cchhhHHH
Q 012563 315 DGVEWLEALPKGYLEMVD--GRGYIVQWAPQ-QQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCL---ADQMVNAR 388 (460)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~--~~~~~~~~vp~-~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~---~DQ~~na~ 388 (460)
....-..+....+ +++.+..|-.+ ..++..++. +|+-||+||++|.|.+|+|.+++|.. -||..-|+
T Consensus 262 -----P~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~ 334 (400)
T COG4671 262 -----PEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQ 334 (400)
T ss_pred -----CHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEeccCCCcHHHHHHHH
Confidence 1222233444444 67788899776 668988888 99999999999999999999999995 49999999
Q ss_pred HHHHhhceeEeeCC-ccCHHHHHHHHHHHhc
Q 012563 389 YVSHVWRVGLHLEG-KLEKKEIETAIRRLMV 418 (460)
Q Consensus 389 ~v~~~lG~G~~~~~-~~~~~~l~~~i~~ll~ 418 (460)
|+++ ||+--.+.. +++++.|+++|...++
T Consensus 335 Rl~~-LGL~dvL~pe~lt~~~La~al~~~l~ 364 (400)
T COG4671 335 RLEE-LGLVDVLLPENLTPQNLADALKAALA 364 (400)
T ss_pred HHHh-cCcceeeCcccCChHHHHHHHHhccc
Confidence 9999 899999977 8999999999999998
No 35
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.78 E-value=1.6e-16 Score=154.55 Aligned_cols=305 Identities=17% Similarity=0.177 Sum_probs=169.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCCC-CCCCCCCceEEeCCCCCCCCCCCCHHHHHHHHHHhcch
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNSP-NSCNYPHFDFHSISDGLTDPSAEDSTTILITLNAKCMV 93 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (460)
|||+|++.+..||+.....||++|.++||+|++++.+.... ...+..+++++.++-.-.. .......+...... ..
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~~~g~~~~~i~~~~~~--~~~~~~~l~~~~~~-~~ 77 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVPKAGIEFYFIPVGGLR--RKGSFRLIKTPLKL-LK 77 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhcccccCCCceEEEeccCcC--CCChHHHHHHHHHH-HH
Confidence 68999999999999988899999999999999998743221 1112246777776621111 11122222111111 01
Q ss_pred hHHHHHHHHhhcCCCCCCCCCCceEEEEcCcc--hHHH-HHhhcCCCeEEEeCccHHHHHHHhhcccccccCCCCCCCCC
Q 012563 94 PFRNCLAKLVSNTNNNNAQEDSVACLITDFLW--QFTH-VADEFKLPTIILQTHSVSGYLGIAAYPFLRDKGYVPIQDPQ 170 (460)
Q Consensus 94 ~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~--~~~~-~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 170 (460)
.+.. +.++.+.. +||+|++.... ..+. ++..+++|.+......
T Consensus 78 ~~~~-l~~~i~~~--------~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~~------------------------- 123 (348)
T TIGR01133 78 AVFQ-ARRILKKF--------KPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQNA------------------------- 123 (348)
T ss_pred HHHH-HHHHHHhc--------CCCEEEEcCCcccHHHHHHHHHcCCCEEEECCCC-------------------------
Confidence 1112 22222221 89999997543 2233 6888899997421100
Q ss_pred CCCccCCCCCCCCCCCCCcccCCCCCcHHHHHHHHhhhccCceEEecchHHhhHHHhhcCccccCCCCceeec-ccccCC
Q 012563 171 SESPVIEYPPLRVKDIPKLETRYPEYNYPLVSAMVNNIKASSGMIWNTFEELEQAALSTLPEEYSGIPVFPIG-PFHKYF 249 (460)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~pv~~vG-pl~~~~ 249 (460)
. .....++. .+.++.++..+...-+ . + ...++| |+....
T Consensus 124 ----------------------~----~~~~~~~~--~~~~d~ii~~~~~~~~---------~-~--~~~~i~n~v~~~~ 163 (348)
T TIGR01133 124 ----------------------V----PGLTNKLL--SRFAKKVLISFPGAKD---------H-F--EAVLVGNPVRQEI 163 (348)
T ss_pred ----------------------C----ccHHHHHH--HHHhCeeEECchhHhh---------c-C--CceEEcCCcCHHH
Confidence 0 00011111 1234445444332111 0 1 224455 332111
Q ss_pred CCCCCCccccccchhhhhccCCCCeEEEEEecccccCCHHHHHHHHHHHHh---CCCCEEEEECCCCCCCchhhccCchh
Q 012563 250 PASSSSLLSQDQSSISWLDKQAPKSVIYVSFGSVAAINETEFLEIAWGLAN---SRVPFLWVVRPGLVDGVEWLEALPKG 326 (460)
Q Consensus 250 ~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~~~~~~~~~~~~~ 326 (460)
.. .+.. .+++...+++++|.+..|+... ......+..++.. .+..+++..++.. . +.
T Consensus 164 ~~-----~~~~---~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~l~~~~~~~~~~~g~~~------~----~~ 223 (348)
T TIGR01133 164 RS-----LPVP---RERFGLREGKPTILVLGGSQGA--KILNELVPKALAKLAEKGIQIVHQTGKND------L----EK 223 (348)
T ss_pred hc-----ccch---hhhcCCCCCCeEEEEECCchhH--HHHHHHHHHHHHHHhhcCcEEEEECCcch------H----HH
Confidence 10 0000 1122222344556554555442 1212223344433 3445555444432 1 11
Q ss_pred HHhhhCC-C-ceEEecc--chHHHhccCCCcceeeccCchhhHHHHhhCCCeeecCcc---cchhhHHHHHHHhhceeEe
Q 012563 327 YLEMVDG-R-GYIVQWA--PQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCL---ADQMVNARYVSHVWRVGLH 399 (460)
Q Consensus 327 ~~~~~~~-~-~~~~~~v--p~~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~---~DQ~~na~~v~~~lG~G~~ 399 (460)
+.+.... + ..++.|. +...+|+.+++ +|+++|.+|+.||+++|+|+|+.|.. .+|..|+..+.+ .|.|..
T Consensus 224 l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~-~~~G~~ 300 (348)
T TIGR01133 224 VKNVYQELGIEAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLED-LGAGLV 300 (348)
T ss_pred HHHHHhhCCceEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHH-CCCEEE
Confidence 2211111 1 1222333 45779999999 99999988999999999999999873 478889999999 499998
Q ss_pred eCC-ccCHHHHHHHHHHHhcc
Q 012563 400 LEG-KLEKKEIETAIRRLMVE 419 (460)
Q Consensus 400 ~~~-~~~~~~l~~~i~~ll~~ 419 (460)
++. +.+.+.|.+++.++++|
T Consensus 301 ~~~~~~~~~~l~~~i~~ll~~ 321 (348)
T TIGR01133 301 IRQKELLPEKLLEALLKLLLD 321 (348)
T ss_pred EecccCCHHHHHHHHHHHHcC
Confidence 876 56899999999999988
No 36
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.76 E-value=2.1e-17 Score=161.96 Aligned_cols=352 Identities=12% Similarity=0.004 Sum_probs=191.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC-CCCCCCCCCceEEeCCCCCCCCCCCCHHHHHHHHHHhcch
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFN-SPNSCNYPHFDFHSISDGLTDPSAEDSTTILITLNAKCMV 93 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (460)
.||+|...++.||+.|. +||++|.++|++|.|++.... .+...-..++++..++- . ...+.+..+.+. ..
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l~v----~---G~~~~l~~~~~~-~~ 76 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGPRMAAEGCEVLYSMEELSV----M---GLREVLGRLGRL-LK 76 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccHHHHhCcCccccChHHhhh----c---cHHHHHHHHHHH-HH
Confidence 47899999999999999 999999999999999987421 11111011233333321 0 011122211111 11
Q ss_pred hHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchH---HH-HHhhcCCCeEEEeCccHHHHHHHhhcccccccCCCCCCCC
Q 012563 94 PFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQF---TH-VADEFKLPTIILQTHSVSGYLGIAAYPFLRDKGYVPIQDP 169 (460)
Q Consensus 94 ~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~---~~-~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 169 (460)
.+.+..+.+.+. +||+||.-....+ .. .|+.+|||++.+.+-....
T Consensus 77 ~~~~~~~~l~~~---------kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P~~wa--------------------- 126 (385)
T TIGR00215 77 IRKEVVQLAKQA---------KPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISPQVWA--------------------- 126 (385)
T ss_pred HHHHHHHHHHhc---------CCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCCcHhh---------------------
Confidence 122223333322 8999998554221 22 7889999999753210000
Q ss_pred CCCCccCCCCCCCCCCCCCcccCCCCCcHHHHHHHHhhhccCceEEecchHHhhHHHhhcCccccCCCCceeec-ccccC
Q 012563 170 QSESPVIEYPPLRVKDIPKLETRYPEYNYPLVSAMVNNIKASSGMIWNTFEELEQAALSTLPEEYSGIPVFPIG-PFHKY 248 (460)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~pv~~vG-pl~~~ 248 (460)
+.. ...+.+.+ .++.+++.+.. +...+ +. .+.++.+|| |+...
T Consensus 127 ----------------------w~~-~~~r~l~~------~~d~v~~~~~~--e~~~~---~~--~g~~~~~vGnPv~~~ 170 (385)
T TIGR00215 127 ----------------------WRK-WRAKKIEK------ATDFLLAILPF--EKAFY---QK--KNVPCRFVGHPLLDA 170 (385)
T ss_pred ----------------------cCc-chHHHHHH------HHhHhhccCCC--cHHHH---Hh--cCCCEEEECCchhhh
Confidence 000 00111111 22222222211 11111 11 235677888 55432
Q ss_pred CCCCCCCccccccchhhhhccCCCCeEEEEEecccccCCHHHHHHHHHHHHhC-----CCCEEEEECCCCCCCchhhccC
Q 012563 249 FPASSSSLLSQDQSSISWLDKQAPKSVIYVSFGSVAAINETEFLEIAWGLANS-----RVPFLWVVRPGLVDGVEWLEAL 323 (460)
Q Consensus 249 ~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~~ 323 (460)
... ..+...+..+-+.-.+++++|.+..||....-.+....+++++... +.++++...... +.+..
T Consensus 171 ~~~----~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~--~~~~~--- 241 (385)
T TIGR00215 171 IPL----YKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFK--RRLQF--- 241 (385)
T ss_pred ccc----cCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCch--hHHHH---
Confidence 210 0011111222233334678888888887752123344455544432 234544443321 10001
Q ss_pred chhHHhhhCCCceEEecc-chHHHhccCCCcceeeccCchhhHHHHhhCCCeeec----Cccc---------chhhHHHH
Q 012563 324 PKGYLEMVDGRGYIVQWA-PQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQ----PCLA---------DQMVNARY 389 (460)
Q Consensus 324 ~~~~~~~~~~~~~~~~~v-p~~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~----P~~~---------DQ~~na~~ 389 (460)
+.+.+....+..+..+. +...++..+++ +|+-+|..|+ |++++|+|+|++ |+.. .|..|+..
T Consensus 242 -~~~~~~~~~~~~v~~~~~~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~ni 317 (385)
T TIGR00215 242 -EQIKAEYGPDLQLHLIDGDARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNI 317 (385)
T ss_pred -HHHHHHhCCCCcEEEECchHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHH
Confidence 11222221122332222 34568999999 9999999887 999999999999 8742 27789999
Q ss_pred HHHhhceeEeeCC-ccCHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 012563 390 VSHVWRVGLHLEG-KLEKKEIETAIRRLMVEA-EGQEMRERITCLKKNVDACLRQGGSSHQALGRLVD 455 (460)
Q Consensus 390 v~~~lG~G~~~~~-~~~~~~l~~~i~~ll~~~-~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 455 (460)
+..+ ++...+.. +.|++.|.+.+.++++|. ...++++..++--+.+++.+.++|.+.++.+.+++
T Consensus 318 l~~~-~~~pel~q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~i~~ 384 (385)
T TIGR00215 318 LANR-LLVPELLQEECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRIYCNADSERAAQAVLE 384 (385)
T ss_pred hcCC-ccchhhcCCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 9996 99988876 899999999999999983 00044444444444444444477788888777665
No 37
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.74 E-value=1.4e-16 Score=156.86 Aligned_cols=164 Identities=13% Similarity=0.191 Sum_probs=110.4
Q ss_pred CCCeEEEEEecccccCCHHHHHHHHHHHHhC-CCCEEEEECCCCCCCchhhccCchhHH---hhhCCCceEEeccch-HH
Q 012563 271 APKSVIYVSFGSVAAINETEFLEIAWGLANS-RVPFLWVVRPGLVDGVEWLEALPKGYL---EMVDGRGYIVQWAPQ-QQ 345 (460)
Q Consensus 271 ~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~vp~-~~ 345 (460)
++++++++..|+.... +.+..+++++.+. +.+++++.+.+.. +-+.+. +..++++.+..|+++ .+
T Consensus 200 ~~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~~--------~~~~l~~~~~~~~~~v~~~g~~~~~~~ 269 (380)
T PRK13609 200 PNKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNEA--------LKQSLEDLQETNPDALKVFGYVENIDE 269 (380)
T ss_pred CCCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCHH--------HHHHHHHHHhcCCCcEEEEechhhHHH
Confidence 3567888878887642 2345566666543 4566666654320 111222 122357788899987 47
Q ss_pred HhccCCCcceeeccCchhhHHHHhhCCCeeec-CcccchhhHHHHHHHhhceeEeeCCccCHHHHHHHHHHHhccchHHH
Q 012563 346 VLAHPAVGGFLTHSGWNSTLESICEGVPMICQ-PCLADQMVNARYVSHVWRVGLHLEGKLEKKEIETAIRRLMVEAEGQE 424 (460)
Q Consensus 346 lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~-P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~l~~~i~~ll~~~~~~~ 424 (460)
++..+++ +|+.+|..|+.||+++|+|+|+. |..+.|..|+..+.+. |+|+.. -+.++|.++|.++++| .+
T Consensus 270 l~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~-G~~~~~---~~~~~l~~~i~~ll~~---~~ 340 (380)
T PRK13609 270 LFRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERK-GAAVVI---RDDEEVFAKTEALLQD---DM 340 (380)
T ss_pred HHHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhC-CcEEEE---CCHHHHHHHHHHHHCC---HH
Confidence 9999998 99999988999999999999985 6777788999999995 998765 3689999999999998 33
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012563 425 MRERITCLKKNVDACLRQGGSSHQALGRLVDHI 457 (460)
Q Consensus 425 ~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (460)
.++ ++++..++ .....+.++.++.+++.+
T Consensus 341 ~~~---~m~~~~~~-~~~~~s~~~i~~~i~~~~ 369 (380)
T PRK13609 341 KLL---QMKEAMKS-LYLPEPADHIVDDILAEN 369 (380)
T ss_pred HHH---HHHHHHHH-hCCCchHHHHHHHHHHhh
Confidence 332 23333322 123445666666655544
No 38
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.70 E-value=7.2e-16 Score=144.22 Aligned_cols=104 Identities=16% Similarity=0.180 Sum_probs=77.9
Q ss_pred CeEEEEEecccccCCHHHHHHHHHHHHhC--CCCEEEEECCCCCCCchhhccCchhHHhhh--CCCceEEeccchH-HHh
Q 012563 273 KSVIYVSFGSVAAINETEFLEIAWGLANS--RVPFLWVVRPGLVDGVEWLEALPKGYLEMV--DGRGYIVQWAPQQ-QVL 347 (460)
Q Consensus 273 ~~~v~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~vp~~-~lL 347 (460)
.+.|+|++|...... ....+++++... +.++.++++.... ..+.+++.. ..|+.+..|++++ ++|
T Consensus 170 ~~~iLi~~GG~d~~~--~~~~~l~~l~~~~~~~~i~vv~G~~~~--------~~~~l~~~~~~~~~i~~~~~~~~m~~lm 239 (279)
T TIGR03590 170 LRRVLVSFGGADPDN--LTLKLLSALAESQINISITLVTGSSNP--------NLDELKKFAKEYPNIILFIDVENMAELM 239 (279)
T ss_pred cCeEEEEeCCcCCcC--HHHHHHHHHhccccCceEEEEECCCCc--------CHHHHHHHHHhCCCEEEEeCHHHHHHHH
Confidence 367899999766522 444566666653 4567777776531 112333222 3577888999985 799
Q ss_pred ccCCCcceeeccCchhhHHHHhhCCCeeecCcccchhhHHHH
Q 012563 348 AHPAVGGFLTHSGWNSTLESICEGVPMICQPCLADQMVNARY 389 (460)
Q Consensus 348 ~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~DQ~~na~~ 389 (460)
..+++ +||+|| +|++|+++.|+|+|++|...+|..||+.
T Consensus 240 ~~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 240 NEADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred HHCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 99999 999999 9999999999999999999999999975
No 39
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.67 E-value=9.6e-15 Score=143.93 Aligned_cols=346 Identities=14% Similarity=0.054 Sum_probs=170.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC-CCCCCCCCCceEEeCCCCCCCCCCCCHHHHHHHHHHhcc
Q 012563 14 GRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFN-SPNSCNYPHFDFHSISDGLTDPSAEDSTTILITLNAKCM 92 (460)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (460)
.|||+|+..++.||+.|.. ++++|.++++++.+++.... .....-..++.++.++- . ...+.+..+....
T Consensus 1 ~~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~---g~~~~~~~~~~~~- 71 (380)
T PRK00025 1 PLRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGPRMQAAGCESLFDMEELAV----M---GLVEVLPRLPRLL- 71 (380)
T ss_pred CceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccHHHHhCCCccccCHHHhhh----c---cHHHHHHHHHHHH-
Confidence 3799999999999999999 99999998888877774321 11111011232222221 0 0111111111110
Q ss_pred hhHHHHHHHHhhcCCCCCCCCCCceEEEEcCc-chHH--H-HHhhcCCCeEEEeCccHHHHHHHhhcccccccCCCCCCC
Q 012563 93 VPFRNCLAKLVSNTNNNNAQEDSVACLITDFL-WQFT--H-VADEFKLPTIILQTHSVSGYLGIAAYPFLRDKGYVPIQD 168 (460)
Q Consensus 93 ~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~-~~~~--~-~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 168 (460)
..+. .+.++.+.. +||+|+.-.. ..+. . .|..+|||++.........
T Consensus 72 ~~~~-~~~~~l~~~--------kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~~~~-------------------- 122 (380)
T PRK00025 72 KIRR-RLKRRLLAE--------PPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPSVWA-------------------- 122 (380)
T ss_pred HHHH-HHHHHHHHc--------CCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCchhh--------------------
Confidence 0111 222222221 8999987432 1222 2 5778899988642210000
Q ss_pred CCCCCccCCCCCCCCCCCCCcccCCCCCcHHHHHHHHhhhccCceEEecchHHhhHHHhhcCccccCCCCceeec-cccc
Q 012563 169 PQSESPVIEYPPLRVKDIPKLETRYPEYNYPLVSAMVNNIKASSGMIWNTFEELEQAALSTLPEEYSGIPVFPIG-PFHK 247 (460)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~pv~~vG-pl~~ 247 (460)
.. ...... ..+.++.++..+....+ .+ .. .+.++.++| |+..
T Consensus 123 -----------------------~~----~~~~~~---~~~~~d~i~~~~~~~~~--~~---~~--~g~~~~~~G~p~~~ 165 (380)
T PRK00025 123 -----------------------WR----QGRAFK---IAKATDHVLALFPFEAA--FY---DK--LGVPVTFVGHPLAD 165 (380)
T ss_pred -----------------------cC----chHHHH---HHHHHhhheeCCccCHH--HH---Hh--cCCCeEEECcCHHH
Confidence 00 000111 12233344443322111 11 11 234577888 4432
Q ss_pred CCCCCCCCccccccchhhhhccCCCCeEEEEEecccccCCHHHHHHHHHHHHhC-----CCCEEEEECCCCCCCchhhcc
Q 012563 248 YFPASSSSLLSQDQSSISWLDKQAPKSVIYVSFGSVAAINETEFLEIAWGLANS-----RVPFLWVVRPGLVDGVEWLEA 322 (460)
Q Consensus 248 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~ 322 (460)
.... .+....+.+.+.-.+++++|++..||...........+++++..+ +.+++++.+...
T Consensus 166 ~~~~-----~~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~--------- 231 (380)
T PRK00025 166 AIPL-----LPDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPK--------- 231 (380)
T ss_pred hccc-----ccChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCChh---------
Confidence 2110 011111222233223456777777775542112234455554432 335666544221
Q ss_pred CchhHHhhh----CCCceEEeccchHHHhccCCCcceeeccCchhhHHHHhhCCCeeecCccc--------chhhH----
Q 012563 323 LPKGYLEMV----DGRGYIVQWAPQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCLA--------DQMVN---- 386 (460)
Q Consensus 323 ~~~~~~~~~----~~~~~~~~~vp~~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~--------DQ~~n---- 386 (460)
..+.+.+.. .-++.+.. -.-..++..+++ +|+.+|.+++ |++++|+|+|+.|... +|..|
T Consensus 232 ~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~ 307 (380)
T PRK00025 232 RREQIEEALAEYAGLEVTLLD-GQKREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVS 307 (380)
T ss_pred hHHHHHHHHhhcCCCCeEEEc-ccHHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeee
Confidence 011122211 11223322 123668999999 9999998887 9999999999985432 22222
Q ss_pred -HHHHHHhhceeEeeCC-ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012563 387 -ARYVSHVWRVGLHLEG-KLEKKEIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHI 457 (460)
Q Consensus 387 -a~~v~~~lG~G~~~~~-~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (460)
+..+.+. +++..+.. ..+++.|.+++.++++| ++.++...+-.+.+.+.. ..++..+.++.+.+.+
T Consensus 308 l~~~~~~~-~~~~~~~~~~~~~~~l~~~i~~ll~~---~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~i~~~~ 375 (380)
T PRK00025 308 LPNLLAGR-ELVPELLQEEATPEKLARALLPLLAD---GARRQALLEGFTELHQQL-RCGADERAAQAVLELL 375 (380)
T ss_pred hHHHhcCC-CcchhhcCCCCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHh
Confidence 2333332 33443433 67899999999999999 444433333222233332 3455666666665544
No 40
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.63 E-value=5.1e-14 Score=138.82 Aligned_cols=165 Identities=17% Similarity=0.238 Sum_probs=112.3
Q ss_pred CCCeEEEEEecccccCCHHHHHHHHHHH-Hh-CCCCEEEEECCCCCCCchhhccCchhHHhh--hCCCceEEeccch-HH
Q 012563 271 APKSVIYVSFGSVAAINETEFLEIAWGL-AN-SRVPFLWVVRPGLVDGVEWLEALPKGYLEM--VDGRGYIVQWAPQ-QQ 345 (460)
Q Consensus 271 ~~~~~v~vs~GS~~~~~~~~~~~~~~al-~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~vp~-~~ 345 (460)
+++++|+++.|+... ...+..+++++ .. .+.+++++.+.+. + +-+.+.+. ..+++.+..|+++ .+
T Consensus 200 ~~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~----~----l~~~l~~~~~~~~~v~~~G~~~~~~~ 269 (391)
T PRK13608 200 PDKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSK----E----LKRSLTAKFKSNENVLILGYTKHMNE 269 (391)
T ss_pred CCCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCH----H----HHHHHHHHhccCCCeEEEeccchHHH
Confidence 457888888998763 13344445553 22 2356666655432 0 11222221 1256788899976 46
Q ss_pred HhccCCCcceeeccCchhhHHHHhhCCCeeec-CcccchhhHHHHHHHhhceeEeeCCccCHHHHHHHHHHHhccchHHH
Q 012563 346 VLAHPAVGGFLTHSGWNSTLESICEGVPMICQ-PCLADQMVNARYVSHVWRVGLHLEGKLEKKEIETAIRRLMVEAEGQE 424 (460)
Q Consensus 346 lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~-P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~l~~~i~~ll~~~~~~~ 424 (460)
++..+++ +|+.+|..|+.||+++|+|+|++ |..++|..|+..+++. |+|+... +.+++.++|.++++|+ +
T Consensus 270 ~~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~-G~g~~~~---~~~~l~~~i~~ll~~~---~ 340 (391)
T PRK13608 270 WMASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEK-GFGKIAD---TPEEAIKIVASLTNGN---E 340 (391)
T ss_pred HHHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhC-CcEEEeC---CHHHHHHHHHHHhcCH---H
Confidence 9999999 99998888999999999999998 7777778999999995 9998764 7889999999999883 2
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 012563 425 MRERITCLKKNVDACLRQGGSSHQALGRLVDHIL 458 (460)
Q Consensus 425 ~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
..++|++..++. ....+..+.++.+++.+.
T Consensus 341 ---~~~~m~~~~~~~-~~~~s~~~i~~~l~~l~~ 370 (391)
T PRK13608 341 ---QLTNMISTMEQD-KIKYATQTICRDLLDLIG 370 (391)
T ss_pred ---HHHHHHHHHHHh-cCCCCHHHHHHHHHHHhh
Confidence 223344444321 234556677777766654
No 41
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.59 E-value=9.7e-13 Score=129.18 Aligned_cols=357 Identities=12% Similarity=0.046 Sum_probs=193.5
Q ss_pred CCCCCChHHHHHHHHHHHh--CCCeEE---EEeCCCCCCCC-CCCCCceEEeCCC-CCCCCCCCCHHHHHHHHHHhcchh
Q 012563 22 LPFQGHINPMLQLGSILYS--KGFSIT---IIHTKFNSPNS-CNYPHFDFHSISD-GLTDPSAEDSTTILITLNAKCMVP 94 (460)
Q Consensus 22 ~~~~GHv~p~l~lA~~L~~--rGh~V~---~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 94 (460)
+.++|-=.-.++||++|.+ .|++|. ++++....+.. ....| .+..+|. ++.. ......+....+.....
T Consensus 4 snghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e~~~ip~~g-~~~~~~sgg~~~---~~~~~~~~~~~~gl~~~ 79 (396)
T TIGR03492 4 SNGHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQNLGIPIIG-PTKELPSGGFSY---QSLRGLLRDLRAGLVGL 79 (396)
T ss_pred CCCchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHhhCCCceeC-CCCCCCCCCccC---CCHHHHHHHHHhhHHHH
Confidence 3566667778999999998 599999 99986444321 11123 4444442 1211 11344444444422222
Q ss_pred HHHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH-HHhhcCCCeEEEeCccHHHHHHHhhcccccccCCCCCCCCCCCC
Q 012563 95 FRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH-VADEFKLPTIILQTHSVSGYLGIAAYPFLRDKGYVPIQDPQSES 173 (460)
Q Consensus 95 l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~-~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 173 (460)
+...+..+.+..+ +||+||+-.-+. .. +|...|+|++++.+.-....... .+.. ...+.+.
T Consensus 80 ~~~~~~~~~~~~~-------~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn~~~~~-------~~~~---~~~~~~~ 141 (396)
T TIGR03492 80 TLGQWRALRKWAK-------KGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSDYYWES-------GPRR---SPSDEYH 141 (396)
T ss_pred HHHHHHHHHHHhh-------cCCEEEEECcHH-HHHHHHHcCCCceEEEeeccceeecC-------CCCC---ccchhhh
Confidence 3333333332222 789999887655 55 99999999999665511111000 0000 0011222
Q ss_pred ccCCCCCCCCCCCCCcccCCCCCcHHHHHHHHhhh-ccCceEEecchHHhhHHHhhcCccccCCCCceeec-ccccCCCC
Q 012563 174 PVIEYPPLRVKDIPKLETRYPEYNYPLVSAMVNNI-KASSGMIWNTFEELEQAALSTLPEEYSGIPVFPIG-PFHKYFPA 251 (460)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~s~~~le~~~~~~~~~~~~~~pv~~vG-pl~~~~~~ 251 (460)
+.+|...++| . ..... +.++.++..+-. ....+ +. .+.++.++| |+......
T Consensus 142 ~~~G~~~~p~------------------e-~n~l~~~~a~~v~~~~~~--t~~~l---~~--~g~k~~~vGnPv~d~l~~ 195 (396)
T TIGR03492 142 RLEGSLYLPW------------------E-RWLMRSRRCLAVFVRDRL--TARDL---RR--QGVRASYLGNPMMDGLEP 195 (396)
T ss_pred ccCCCccCHH------------------H-HHHhhchhhCEEeCCCHH--HHHHH---HH--CCCeEEEeCcCHHhcCcc
Confidence 2222221111 1 11111 334444443322 11211 11 336799999 77654321
Q ss_pred CCCCccccccchhhhhccCCCCeEEEEEecccccCCHHHHHHHHHHHHhC----CCCEEEEECCCCCCCchhhccCchhH
Q 012563 252 SSSSLLSQDQSSISWLDKQAPKSVIYVSFGSVAAINETEFLEIAWGLANS----RVPFLWVVRPGLVDGVEWLEALPKGY 327 (460)
Q Consensus 252 ~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~ 327 (460)
... . +-.+++++|.+-.||....-.+.+..+++++..+ +..+++.+.++... ..+-..+
T Consensus 196 -------~~~---~--~l~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~~-----~~~~~~l 258 (396)
T TIGR03492 196 -------PER---K--PLLTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLSL-----EKLQAIL 258 (396)
T ss_pred -------ccc---c--ccCCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCCH-----HHHHHHH
Confidence 110 0 1123567899999998663333344555555543 45677777443211 0010111
Q ss_pred Hh-hh--------------CCCceEEeccc-hHHHhccCCCcceeeccCchhhHHHHhhCCCeeecCcccchhhHHHHHH
Q 012563 328 LE-MV--------------DGRGYIVQWAP-QQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCLADQMVNARYVS 391 (460)
Q Consensus 328 ~~-~~--------------~~~~~~~~~vp-~~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~ 391 (460)
.+ .. .+++.+..+.. ..+++..+++ +|+-+|..| .|+++.|+|+|++|....|. |+...+
T Consensus 259 ~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~~ 334 (396)
T TIGR03492 259 EDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFAE 334 (396)
T ss_pred HhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHHH
Confidence 10 00 11244555554 4669999999 999999766 99999999999999877786 987776
Q ss_pred Hhh----ceeEeeCCccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 012563 392 HVW----RVGLHLEGKLEKKEIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVD 455 (460)
Q Consensus 392 ~~l----G~G~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 455 (460)
+ . |.++.+.. .+.+.|.+++.++++| ++.+++.. +..++.+.+++.+.+.++.+.+
T Consensus 335 ~-~~~l~g~~~~l~~-~~~~~l~~~l~~ll~d---~~~~~~~~---~~~~~~lg~~~a~~~ia~~i~~ 394 (396)
T TIGR03492 335 A-QSRLLGGSVFLAS-KNPEQAAQVVRQLLAD---PELLERCR---RNGQERMGPPGASARIAESILK 394 (396)
T ss_pred h-hHhhcCCEEecCC-CCHHHHHHHHHHHHcC---HHHHHHHH---HHHHHhcCCCCHHHHHHHHHHH
Confidence 6 3 66666654 5569999999999998 44443333 2222222345556666555544
No 42
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.58 E-value=7.1e-17 Score=139.67 Aligned_cols=135 Identities=21% Similarity=0.247 Sum_probs=96.6
Q ss_pred EEEEEecccccCCH-HHHHHHHHHHHh--CCCCEEEEECCCCCCCchhhccCchhHHhhhCCCceEEeccc-hHHHhccC
Q 012563 275 VIYVSFGSVAAINE-TEFLEIAWGLAN--SRVPFLWVVRPGLVDGVEWLEALPKGYLEMVDGRGYIVQWAP-QQQVLAHP 350 (460)
Q Consensus 275 ~v~vs~GS~~~~~~-~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp-~~~lL~~~ 350 (460)
+|||+.||.....- +.+..+...+.. .+.++++.+|.... ......+. ....++.+..|++ ..+++..+
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~------~~~~~~~~-~~~~~v~~~~~~~~m~~~m~~a 73 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNY------EELKIKVE-NFNPNVKVFGFVDNMAELMAAA 73 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCEC------HHHCCCHC-CTTCCCEEECSSSSHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcH------HHHHHHHh-ccCCcEEEEechhhHHHHHHHc
Confidence 58999998876211 112223333332 24788888887642 11111121 1125678899999 68899999
Q ss_pred CCcceeeccCchhhHHHHhhCCCeeecCccc----chhhHHHHHHHhhceeEeeCC-ccCHHHHHHHHHHHhcc
Q 012563 351 AVGGFLTHSGWNSTLESICEGVPMICQPCLA----DQMVNARYVSHVWRVGLHLEG-KLEKKEIETAIRRLMVE 419 (460)
Q Consensus 351 ~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~----DQ~~na~~v~~~lG~G~~~~~-~~~~~~l~~~i~~ll~~ 419 (460)
++ +|||||.||++|++++|+|+|++|... ||..||..+++. |+|..+.. ..+.+.|.++|.+++++
T Consensus 74 Dl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~-g~~~~~~~~~~~~~~L~~~i~~l~~~ 144 (167)
T PF04101_consen 74 DL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKK-GAAIMLDESELNPEELAEAIEELLSD 144 (167)
T ss_dssp SE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHC-CCCCCSECCC-SCCCHHHHHHCHCCC
T ss_pred CE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHc-CCccccCcccCCHHHHHHHHHHHHcC
Confidence 99 999999999999999999999999988 999999999995 99999987 77899999999999998
No 43
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.52 E-value=2.6e-12 Score=126.46 Aligned_cols=139 Identities=13% Similarity=0.085 Sum_probs=94.3
Q ss_pred hccCCCCeEEEEEecccccCCHH-HHHHHHHHHH-----hCCCCEEEEECCCCCCCchhhccCchhHHhh-hCCCceEEe
Q 012563 267 LDKQAPKSVIYVSFGSVAAINET-EFLEIAWGLA-----NSRVPFLWVVRPGLVDGVEWLEALPKGYLEM-VDGRGYIVQ 339 (460)
Q Consensus 267 l~~~~~~~~v~vs~GS~~~~~~~-~~~~~~~al~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 339 (460)
+.-.+++++|++..|+....... .+..+...+. ..+.++++++|.+.. +-+.+.+. ...++++..
T Consensus 200 ~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~~--------~~~~L~~~~~~~~v~~~G 271 (382)
T PLN02605 200 LGMDEDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRNKK--------LQSKLESRDWKIPVKVRG 271 (382)
T ss_pred cCCCCCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCCHH--------HHHHHHhhcccCCeEEEe
Confidence 33334567888777766542222 2222322220 123456666765420 11122211 124567889
Q ss_pred ccch-HHHhccCCCcceeeccCchhhHHHHhhCCCeeecCcccchh-hHHHHHHHhhceeEeeCCccCHHHHHHHHHHHh
Q 012563 340 WAPQ-QQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCLADQM-VNARYVSHVWRVGLHLEGKLEKKEIETAIRRLM 417 (460)
Q Consensus 340 ~vp~-~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~DQ~-~na~~v~~~lG~G~~~~~~~~~~~l~~~i~~ll 417 (460)
|+++ .+++..+|+ +|+.+|.+|++||+++|+|+|+.+....|. .|+..+.+. |.|... -++++|.++|.+++
T Consensus 272 ~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~-g~g~~~---~~~~~la~~i~~ll 345 (382)
T PLN02605 272 FVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDN-GFGAFS---ESPKEIARIVAEWF 345 (382)
T ss_pred ccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhC-Cceeec---CCHHHHHHHHHHHH
Confidence 9986 569999999 999999999999999999999998766665 699999995 999765 48899999999999
Q ss_pred cc
Q 012563 418 VE 419 (460)
Q Consensus 418 ~~ 419 (460)
++
T Consensus 346 ~~ 347 (382)
T PLN02605 346 GD 347 (382)
T ss_pred cC
Confidence 86
No 44
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.48 E-value=1.2e-10 Score=113.35 Aligned_cols=112 Identities=19% Similarity=0.206 Sum_probs=79.3
Q ss_pred hCCCceEEeccchHH---HhccCCCcceeeccC----chhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCc
Q 012563 331 VDGRGYIVQWAPQQQ---VLAHPAVGGFLTHSG----WNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGK 403 (460)
Q Consensus 331 ~~~~~~~~~~vp~~~---lL~~~~~~~~I~HGG----~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~ 403 (460)
..+++.+..|+++.+ ++..+++ +|+.+. .+++.||+++|+|+|+.+.. .+...+++. +.|.....
T Consensus 245 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~----~~~~~i~~~-~~g~~~~~- 316 (364)
T cd03814 245 RYPNVHFLGFLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAG----GPADIVTDG-ENGLLVEP- 316 (364)
T ss_pred cCCcEEEEeccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCC----CchhhhcCC-cceEEcCC-
Confidence 346678889988654 7889998 887754 37899999999999996654 456677774 88988874
Q ss_pred cCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012563 404 LEKKEIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHI 457 (460)
Q Consensus 404 ~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (460)
-+.+++.++|.++++| ++.++ ++++..++.. +.-+.++..+++++.+
T Consensus 317 ~~~~~l~~~i~~l~~~---~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~ 363 (364)
T cd03814 317 GDAEAFAAALAALLAD---PELRR---RMAARARAEA-ERRSWEAFLDNLLEAY 363 (364)
T ss_pred CCHHHHHHHHHHHHcC---HHHHH---HHHHHHHHHH-hhcCHHHHHHHHHHhh
Confidence 6788899999999998 33332 2222222222 3456777777777654
No 45
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.43 E-value=7.7e-10 Score=111.92 Aligned_cols=137 Identities=15% Similarity=0.155 Sum_probs=86.3
Q ss_pred EEEEEecccccCCHHHHHHHHHHHHhC-CCCEEEEECCCCCCCchhhccCchhHHhhh-CCCceEEeccchHH---Hhcc
Q 012563 275 VIYVSFGSVAAINETEFLEIAWGLANS-RVPFLWVVRPGLVDGVEWLEALPKGYLEMV-DGRGYIVQWAPQQQ---VLAH 349 (460)
Q Consensus 275 ~v~vs~GS~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~vp~~~---lL~~ 349 (460)
.+++..|+... .+.+..++++++.. +.+++++ |.+. ..+.+.+.. ..++.+..|+++.+ ++..
T Consensus 264 ~~i~~vGrl~~--~K~~~~li~a~~~~~~~~l~iv-G~G~---------~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~ 331 (465)
T PLN02871 264 PLIVYVGRLGA--EKNLDFLKRVMERLPGARLAFV-GDGP---------YREELEKMFAGTPTVFTGMLQGDELSQAYAS 331 (465)
T ss_pred eEEEEeCCCch--hhhHHHHHHHHHhCCCcEEEEE-eCCh---------HHHHHHHHhccCCeEEeccCCHHHHHHHHHH
Confidence 34456687653 34466677777765 4454444 4322 112222222 24667889997644 8888
Q ss_pred CCCcceeeccC----chhhHHHHhhCCCeeecCcccchhhHHHHHHH---hhceeEeeCCccCHHHHHHHHHHHhccch-
Q 012563 350 PAVGGFLTHSG----WNSTLESICEGVPMICQPCLADQMVNARYVSH---VWRVGLHLEGKLEKKEIETAIRRLMVEAE- 421 (460)
Q Consensus 350 ~~~~~~I~HGG----~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~---~lG~G~~~~~~~~~~~l~~~i~~ll~~~~- 421 (460)
+++ ||.-.. ..++.||+++|+|+|+.... .....+++ . +.|..++. -+.+++.++|.++++|.+
T Consensus 332 aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv~~~~~~-~~G~lv~~-~d~~~la~~i~~ll~~~~~ 403 (465)
T PLN02871 332 GDV--FVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDIIPPDQEG-KTGFLYTP-GDVDDCVEKLETLLADPEL 403 (465)
T ss_pred CCE--EEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhhhcCCCC-CceEEeCC-CCHHHHHHHHHHHHhCHHH
Confidence 888 885443 35789999999999986543 23445554 4 77888864 588999999999998832
Q ss_pred HHHHHHHHHH
Q 012563 422 GQEMRERITC 431 (460)
Q Consensus 422 ~~~~~~~a~~ 431 (460)
..++.+++++
T Consensus 404 ~~~~~~~a~~ 413 (465)
T PLN02871 404 RERMGAAARE 413 (465)
T ss_pred HHHHHHHHHH
Confidence 2334444444
No 46
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.37 E-value=4.5e-11 Score=106.09 Aligned_cols=146 Identities=15% Similarity=0.175 Sum_probs=107.4
Q ss_pred CeEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEECCCCCCCchhhccCchhHHhhhC--CCceEEeccc-hHHHhcc
Q 012563 273 KSVIYVSFGSVAAINETEFLEIAWGLANSRVPFLWVVRPGLVDGVEWLEALPKGYLEMVD--GRGYIVQWAP-QQQVLAH 349 (460)
Q Consensus 273 ~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~vp-~~~lL~~ 349 (460)
+.-|+|++|..-. ......++..+.+.++.+-++++.. .+..++++++.. +|+.+..... ...+++.
T Consensus 158 ~r~ilI~lGGsDp--k~lt~kvl~~L~~~~~nl~iV~gs~--------~p~l~~l~k~~~~~~~i~~~~~~~dma~LMke 227 (318)
T COG3980 158 KRDILITLGGSDP--KNLTLKVLAELEQKNVNLHIVVGSS--------NPTLKNLRKRAEKYPNINLYIDTNDMAELMKE 227 (318)
T ss_pred hheEEEEccCCCh--hhhHHHHHHHhhccCeeEEEEecCC--------CcchhHHHHHHhhCCCeeeEecchhHHHHHHh
Confidence 4458999987553 3355667788877775555666632 223445554443 5666665555 4559999
Q ss_pred CCCcceeeccCchhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCccCHHHHHHHHHHHhccchHHHHHHHH
Q 012563 350 PAVGGFLTHSGWNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEKKEIETAIRRLMVEAEGQEMRERI 429 (460)
Q Consensus 350 ~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a 429 (460)
|++ .|+-|| .|+.|++.-|+|.+++|+...|-.-|+..+. +|+-..+.-.++.+....-+.++.+| ...|.+.
T Consensus 228 ~d~--aI~AaG-stlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~-lg~~~~l~~~l~~~~~~~~~~~i~~d---~~~rk~l 300 (318)
T COG3980 228 ADL--AISAAG-STLYEALLLGVPSLVLPLAENQIATAKEFEA-LGIIKQLGYHLKDLAKDYEILQIQKD---YARRKNL 300 (318)
T ss_pred cch--heeccc-hHHHHHHHhcCCceEEeeeccHHHHHHHHHh-cCchhhccCCCchHHHHHHHHHhhhC---HHHhhhh
Confidence 999 999988 5999999999999999999999999999999 69988886567888888888889988 5666655
Q ss_pred HHHHHH
Q 012563 430 TCLKKN 435 (460)
Q Consensus 430 ~~l~~~ 435 (460)
-...+.
T Consensus 301 ~~~~~~ 306 (318)
T COG3980 301 SFGSKL 306 (318)
T ss_pred hhccce
Confidence 444433
No 47
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.35 E-value=4.1e-09 Score=102.24 Aligned_cols=130 Identities=18% Similarity=0.174 Sum_probs=82.1
Q ss_pred CCeEEEEEecccccCCHHHHHHHHHHHHhC---CCCEEEEECCCCCCCchhhccCchhHHhhhCCCceEEeccchHH---
Q 012563 272 PKSVIYVSFGSVAAINETEFLEIAWGLANS---RVPFLWVVRPGLVDGVEWLEALPKGYLEMVDGRGYIVQWAPQQQ--- 345 (460)
Q Consensus 272 ~~~~v~vs~GS~~~~~~~~~~~~~~al~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~--- 345 (460)
..+.+++..|+.... +.+..+++++... +.++++ +|...... .........+++.+..|+++.+
T Consensus 189 ~~~~~i~~~G~~~~~--k~~~~li~~~~~l~~~~~~l~i-~G~~~~~~-------~~~~~~~~~~~v~~~g~~~~~~~~~ 258 (359)
T cd03823 189 GGRLRFGFIGQLTPH--KGVDLLLEAFKRLPRGDIELVI-VGNGLELE-------EESYELEGDPRVEFLGAYPQEEIDD 258 (359)
T ss_pred CCceEEEEEecCccc--cCHHHHHHHHHHHHhcCcEEEE-EcCchhhh-------HHHHhhcCCCeEEEeCCCCHHHHHH
Confidence 345666677876642 2233444444433 344444 34332110 0001012346778889997544
Q ss_pred HhccCCCcceeec----cCc-hhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCccCHHHHHHHHHHHhcc
Q 012563 346 VLAHPAVGGFLTH----SGW-NSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEKKEIETAIRRLMVE 419 (460)
Q Consensus 346 lL~~~~~~~~I~H----GG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~l~~~i~~ll~~ 419 (460)
++..+++ +|+. .|. .++.||+++|+|+|+.+. ..+...+.+. +.|..++. -+.+++.+++.++++|
T Consensus 259 ~~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~~-~d~~~l~~~i~~l~~~ 329 (359)
T cd03823 259 FYAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELVRDG-VNGLLFPP-GDAEDLAAALERLIDD 329 (359)
T ss_pred HHHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHhcCC-CcEEEECC-CCHHHHHHHHHHHHhC
Confidence 6888888 7732 333 589999999999999544 4566777773 67888874 5689999999999997
No 48
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.35 E-value=2e-09 Score=105.60 Aligned_cols=113 Identities=15% Similarity=0.125 Sum_probs=78.5
Q ss_pred CCceEEeccch-HHHhccCCCcceeec----cCchhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCccCHH
Q 012563 333 GRGYIVQWAPQ-QQVLAHPAVGGFLTH----SGWNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEKK 407 (460)
Q Consensus 333 ~~~~~~~~vp~-~~lL~~~~~~~~I~H----GG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~ 407 (460)
+++.+..+.++ ..++..+++ +|.- |.-.++.||+++|+|+|+. |....+..+++. ..|..++. -+.+
T Consensus 253 ~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s----~~~~~~e~i~~~-~~G~~~~~-~~~~ 324 (371)
T cd04962 253 DDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVAS----NAGGIPEVVKHG-ETGFLVDV-GDVE 324 (371)
T ss_pred ceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEe----CCCCchhhhcCC-CceEEcCC-CCHH
Confidence 56677787775 568999988 7733 3346999999999999994 444566777773 67776663 5889
Q ss_pred HHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC
Q 012563 408 EIETAIRRLMVEAE-GQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHILSF 460 (460)
Q Consensus 408 ~l~~~i~~ll~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 460 (460)
++.+++.+++++.+ ..++++++++. +.+.-+.+..++++.+.++++
T Consensus 325 ~l~~~i~~l~~~~~~~~~~~~~~~~~-------~~~~fs~~~~~~~~~~~y~~~ 371 (371)
T cd04962 325 AMAEYALSLLEDDELWQEFSRAARNR-------AAERFDSERIVPQYEALYRRL 371 (371)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHH-------HHHhCCHHHHHHHHHHHHHhC
Confidence 99999999998732 12333333333 224456778888888877653
No 49
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.34 E-value=6.6e-09 Score=103.56 Aligned_cols=167 Identities=11% Similarity=0.060 Sum_probs=95.2
Q ss_pred CeEEEEEecccccCCHHHHHHHHHHHHhCC--CCE-EEEECCCCCCCchhhccCchhHHhhhCCCceEEeccchHH---H
Q 012563 273 KSVIYVSFGSVAAINETEFLEIAWGLANSR--VPF-LWVVRPGLVDGVEWLEALPKGYLEMVDGRGYIVQWAPQQQ---V 346 (460)
Q Consensus 273 ~~~v~vs~GS~~~~~~~~~~~~~~al~~~~--~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~---l 346 (460)
.+.+++..|+... .+-+..+++++.... .++ ++.+|.+.. .+.+-+-......+|+.+..|+|+.+ +
T Consensus 228 ~~~~i~~~G~l~~--~kg~~~li~a~~~l~~~~~~~l~ivG~g~~-----~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~ 300 (412)
T PRK10307 228 GKKIVLYSGNIGE--KQGLELVIDAARRLRDRPDLIFVICGQGGG-----KARLEKMAQCRGLPNVHFLPLQPYDRLPAL 300 (412)
T ss_pred CCEEEEEcCcccc--ccCHHHHHHHHHHhccCCCeEEEEECCChh-----HHHHHHHHHHcCCCceEEeCCCCHHHHHHH
Confidence 3455556787764 334555556655432 122 233443321 01111111111124678889998644 7
Q ss_pred hccCCCcceeeccCc------hhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCccCHHHHHHHHHHHhccc
Q 012563 347 LAHPAVGGFLTHSGW------NSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEKKEIETAIRRLMVEA 420 (460)
Q Consensus 347 L~~~~~~~~I~HGG~------~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~l~~~i~~ll~~~ 420 (460)
+..+++-++.+..+. +.+.|++++|+|+|+....+.. ....++ +.|..++. -+.++++++|.++++|.
T Consensus 301 ~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i~---~~G~~~~~-~d~~~la~~i~~l~~~~ 374 (412)
T PRK10307 301 LKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLVE---GIGVCVEP-ESVEALVAAIAALARQA 374 (412)
T ss_pred HHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHHh---CCcEEeCC-CCHHHHHHHHHHHHhCH
Confidence 888988545455332 2368999999999997654311 112222 45666663 58899999999999873
Q ss_pred h-HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 012563 421 E-GQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHILS 459 (460)
Q Consensus 421 ~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
+ .+.+++++++.. .+.-+.+..++++++.+++
T Consensus 375 ~~~~~~~~~a~~~~-------~~~fs~~~~~~~~~~~~~~ 407 (412)
T PRK10307 375 LLRPKLGTVAREYA-------ERTLDKENVLRQFIADIRG 407 (412)
T ss_pred HHHHHHHHHHHHHH-------HHHcCHHHHHHHHHHHHHH
Confidence 2 234444444433 3444677778887777765
No 50
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.31 E-value=4.1e-09 Score=103.22 Aligned_cols=334 Identities=15% Similarity=0.070 Sum_probs=165.2
Q ss_pred EEEEEcCCC----CCChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC--------CCCCceEEeCCCCCCCCCCCCHHHH
Q 012563 16 RVILFPLPF----QGHINPMLQLGSILYSKGFSITIIHTKFNSPNSC--------NYPHFDFHSISDGLTDPSAEDSTTI 83 (460)
Q Consensus 16 ~il~~~~~~----~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (460)
||++++... .|+-.....+++.|+++||+|++++......... ...++++..++...... .......
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 79 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKGYKREEVDGVRVHRVPLPPYKK-NGLLKRL 79 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCcccccccccceEEecCCeEEEEEecCCCCc-cchHHHH
Confidence 466666543 4899999999999999999999999754333221 12466666665321111 1001111
Q ss_pred HHHHHHhcchhHHHHHHHHhhcCCCCCCCCCCceEEEEcC-cch---HHH-HHhhcCCCeEEEeCccHHHHHHHhhcccc
Q 012563 84 LITLNAKCMVPFRNCLAKLVSNTNNNNAQEDSVACLITDF-LWQ---FTH-VADEFKLPTIILQTHSVSGYLGIAAYPFL 158 (460)
Q Consensus 84 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~-~~~---~~~-~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 158 (460)
.... .. .......+.... . +||+|++.. ... .+. ++...++|++...............
T Consensus 80 ~~~~-~~----~~~~~~~~~~~~-~------~~D~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~---- 143 (394)
T cd03794 80 LNYL-SF----ALSALLALLKRR-R------RPDVIIATSPPLLIALAALLLARLKGAPFVLEVRDLWPESAVALG---- 143 (394)
T ss_pred Hhhh-HH----HHHHHHHHHhcc-c------CCCEEEEcCChHHHHHHHHHHHHhcCCCEEEEehhhcchhHHHcc----
Confidence 1111 00 111122221111 1 899999996 111 122 5666699998754431111000000
Q ss_pred cccCCCCCCCCCCCCccCCCCCCCCCCCCCcccCCCCCcHHHHHHHH-hhhccCceEEecchHHhhHHHhhcCccccCCC
Q 012563 159 RDKGYVPIQDPQSESPVIEYPPLRVKDIPKLETRYPEYNYPLVSAMV-NNIKASSGMIWNTFEELEQAALSTLPEEYSGI 237 (460)
Q Consensus 159 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~ 237 (460)
. ............... ..+..++.++..+....+.- .. ... ...
T Consensus 144 ----~---------------------------~~~~~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~~--~~-~~~-~~~ 188 (394)
T cd03794 144 ----L---------------------------LKNGSLLYRLLRKLERLIYRRADAIVVISPGMREYL--VR-RGV-PPE 188 (394)
T ss_pred ----C---------------------------ccccchHHHHHHHHHHHHHhcCCEEEEECHHHHHHH--Hh-cCC-CcC
Confidence 0 000000112222222 23466777777666544321 10 110 113
Q ss_pred CceeecccccCCCCCCCCccccccchhhhhccCCCCeEEEEEecccccC-CHHHHHHHHHHHHhC-CCCEEEEECCCCCC
Q 012563 238 PVFPIGPFHKYFPASSSSLLSQDQSSISWLDKQAPKSVIYVSFGSVAAI-NETEFLEIAWGLANS-RVPFLWVVRPGLVD 315 (460)
Q Consensus 238 pv~~vGpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~-~~~~~~~~~~al~~~-~~~~i~~~~~~~~~ 315 (460)
++..+......... ............. ...++.+++..|+.... ..+.+...+..+... +.++++ ++....
T Consensus 189 ~~~~i~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i-~G~~~~- 261 (394)
T cd03794 189 KISVIPNGVDLELF---KPPPADESLRKEL--GLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLI-VGDGPE- 261 (394)
T ss_pred ceEEcCCCCCHHHc---CCccchhhhhhcc--CCCCcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEE-eCCccc-
Confidence 34444422211100 0000000001111 12345667777876652 223333333333333 334333 443221
Q ss_pred CchhhccCchhHHhhhCCCceEEeccchHH---HhccCCCcceeeccC---------chhhHHHHhhCCCeeecCcccch
Q 012563 316 GVEWLEALPKGYLEMVDGRGYIVQWAPQQQ---VLAHPAVGGFLTHSG---------WNSTLESICEGVPMICQPCLADQ 383 (460)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~---lL~~~~~~~~I~HGG---------~~s~~eal~~GvP~v~~P~~~DQ 383 (460)
...+.+.+.....+++.+..++++.+ ++..+++ +|.... -+++.||+++|+|+|+.+..+.+
T Consensus 262 ----~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~ 335 (394)
T cd03794 262 ----KEELKELAKALGLDNVTFLGRVPKEELPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESA 335 (394)
T ss_pred ----HHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCch
Confidence 01111111222346778888998654 7888888 765433 23479999999999997766543
Q ss_pred hhHHHHHHHhhceeEeeCCccCHHHHHHHHHHHhccc
Q 012563 384 MVNARYVSHVWRVGLHLEGKLEKKEIETAIRRLMVEA 420 (460)
Q Consensus 384 ~~na~~v~~~lG~G~~~~~~~~~~~l~~~i~~ll~~~ 420 (460)
. .+.+ .+.|..++. -+.+++.++|.++++|.
T Consensus 336 ~----~~~~-~~~g~~~~~-~~~~~l~~~i~~~~~~~ 366 (394)
T cd03794 336 E----LVEE-AGAGLVVPP-GDPEALAAAILELLDDP 366 (394)
T ss_pred h----hhcc-CCcceEeCC-CCHHHHHHHHHHHHhCh
Confidence 3 3444 266777764 58899999999999873
No 51
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.31 E-value=5e-09 Score=103.71 Aligned_cols=328 Identities=13% Similarity=0.074 Sum_probs=162.2
Q ss_pred CCChHHHHHHHHHHHhCCCeEEEEeCCCCCCC---CCCCCCceEEeCCCCCCCCCCCCHHHHHHHHHHhcchhHHHHHHH
Q 012563 25 QGHINPMLQLGSILYSKGFSITIIHTKFNSPN---SCNYPHFDFHSISDGLTDPSAEDSTTILITLNAKCMVPFRNCLAK 101 (460)
Q Consensus 25 ~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 101 (460)
.|.-..+..|+++|+++||+|++++....... .....++.++.++...... .. ...+...+.. .....+..
T Consensus 21 GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~----~~~~~~~~ 94 (398)
T cd03800 21 GGQNVYVLELARALARLGHEVDIFTRRIDDALPPIVELAPGVRVVRVPAGPAEY-LP-KEELWPYLDE----FADDLLRF 94 (398)
T ss_pred CceeehHHHHHHHHhccCceEEEEEecCCcccCCccccccceEEEecccccccC-CC-hhhcchhHHH----HHHHHHHH
Confidence 47888999999999999999999986433222 1223567777765211110 00 0011111100 11112222
Q ss_pred HhhcCCCCCCCCCCceEEEEcCcc--hHHH-HHhhcCCCeEEEeCccHHHHHHHhhcccccccCCCCCCCCCCCCccCCC
Q 012563 102 LVSNTNNNNAQEDSVACLITDFLW--QFTH-VADEFKLPTIILQTHSVSGYLGIAAYPFLRDKGYVPIQDPQSESPVIEY 178 (460)
Q Consensus 102 l~~~~~~~~~~~~~pDlvI~D~~~--~~~~-~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 178 (460)
+..... +||+|++.... ..+. ++..+|+|+|......... . ....
T Consensus 95 ~~~~~~-------~~Div~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~--------------~-----------~~~~ 142 (398)
T cd03800 95 LRREGG-------RPDLIHAHYWDSGLVALLLARRLGIPLVHTFHSLGAV--------------K-----------RRHL 142 (398)
T ss_pred HHhcCC-------CccEEEEecCccchHHHHHHhhcCCceEEEeeccccc--------------C-----------Cccc
Confidence 222211 79999987533 2334 8889999988643320000 0 0000
Q ss_pred CCCCCCCCCCcccCCCCCcHHHHHHHHhhhccCceEEecchHHhhHHHhhcCccccCCCCceeecccccCCCCCCCCccc
Q 012563 179 PPLRVKDIPKLETRYPEYNYPLVSAMVNNIKASSGMIWNTFEELEQAALSTLPEEYSGIPVFPIGPFHKYFPASSSSLLS 258 (460)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~pv~~vGpl~~~~~~~~~~~~~ 258 (460)
.. ................+..++.++..+....+.- ....... ...+..+.+-.....- ....
T Consensus 143 -~~----------~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~-~~~~~~~--~~~~~vi~ng~~~~~~---~~~~ 205 (398)
T cd03800 143 -GA----------ADTYEPARRIEAEERLLRAADRVIASTPQEAEEL-YSLYGAY--PRRIRVVPPGVDLERF---TPYG 205 (398)
T ss_pred -cc----------ccccchhhhhhHHHHHHhhCCEEEEcCHHHHHHH-HHHcccc--ccccEEECCCCCccce---eccc
Confidence 00 0000000011112334567778887776543311 0110110 0123344322111000 0000
Q ss_pred cccchhhhhccCCCCeEEEEEecccccCCHHHHHHHHHHHHhC-----CCCEEEEECCCCCCCchhhccCchhHHhh--h
Q 012563 259 QDQSSISWLDKQAPKSVIYVSFGSVAAINETEFLEIAWGLANS-----RVPFLWVVRPGLVDGVEWLEALPKGYLEM--V 331 (460)
Q Consensus 259 ~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~ 331 (460)
......+.+.. +....+++..|+.... +.+..+++++... +.+++++.+...... ......-..+.+. .
T Consensus 206 ~~~~~~~~~~~-~~~~~~i~~~gr~~~~--k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~-~~~~~~~~~~~~~~~~ 281 (398)
T cd03800 206 RAEARRARLLR-DPDKPRILAVGRLDPR--KGIDTLIRAYAELPELRERANLVIVGGPRDDIL-AMDEEELRELARELGV 281 (398)
T ss_pred chhhHHHhhcc-CCCCcEEEEEcccccc--cCHHHHHHHHHHHHHhCCCeEEEEEECCCCcch-hhhhHHHHHHHHhcCC
Confidence 00000111111 2334556677876642 2233444444432 344555444332110 0000000111111 2
Q ss_pred CCCceEEeccchHH---HhccCCCcceeecc---C-chhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCcc
Q 012563 332 DGRGYIVQWAPQQQ---VLAHPAVGGFLTHS---G-WNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKL 404 (460)
Q Consensus 332 ~~~~~~~~~vp~~~---lL~~~~~~~~I~HG---G-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~ 404 (460)
.+++.+..|+|+.+ ++..+++ +++.+ | ..++.||+++|+|+|+... ......+++. +.|..++. -
T Consensus 282 ~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~----~~~~e~i~~~-~~g~~~~~-~ 353 (398)
T cd03800 282 IDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAV----GGPRDIVVDG-VTGLLVDP-R 353 (398)
T ss_pred CceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCC----CCHHHHccCC-CCeEEeCC-C
Confidence 36678889999755 5888888 87542 2 3689999999999998554 3456677774 78988874 5
Q ss_pred CHHHHHHHHHHHhcc
Q 012563 405 EKKEIETAIRRLMVE 419 (460)
Q Consensus 405 ~~~~l~~~i~~ll~~ 419 (460)
+.+++.++|.+++++
T Consensus 354 ~~~~l~~~i~~l~~~ 368 (398)
T cd03800 354 DPEALAAALRRLLTD 368 (398)
T ss_pred CHHHHHHHHHHHHhC
Confidence 799999999999988
No 52
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.30 E-value=1.2e-08 Score=101.24 Aligned_cols=79 Identities=18% Similarity=0.197 Sum_probs=60.5
Q ss_pred CCceEEeccchHH---HhccCCCcceee---ccCc-hhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCccC
Q 012563 333 GRGYIVQWAPQQQ---VLAHPAVGGFLT---HSGW-NSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLE 405 (460)
Q Consensus 333 ~~~~~~~~vp~~~---lL~~~~~~~~I~---HGG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~ 405 (460)
+++.+..++|+.+ ++..+++ +|. +.|. .++.||+++|+|+|+. |.......+.+. ..|..++. -+
T Consensus 281 ~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas----~~~g~~e~i~~~-~~G~lv~~-~d 352 (396)
T cd03818 281 SRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGS----DTAPVREVITDG-ENGLLVDF-FD 352 (396)
T ss_pred ceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEc----CCCCchhhcccC-CceEEcCC-CC
Confidence 5778889998754 6778888 663 2232 4899999999999984 444566667663 67877764 68
Q ss_pred HHHHHHHHHHHhcc
Q 012563 406 KKEIETAIRRLMVE 419 (460)
Q Consensus 406 ~~~l~~~i~~ll~~ 419 (460)
++++.++|.++++|
T Consensus 353 ~~~la~~i~~ll~~ 366 (396)
T cd03818 353 PDALAAAVIELLDD 366 (396)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999998
No 53
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.30 E-value=4.9e-09 Score=104.37 Aligned_cols=346 Identities=14% Similarity=0.095 Sum_probs=172.6
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCCCC-C-CCCCCceEEeCCCCCCCCCCCCHHHHHHHHHHh
Q 012563 13 NGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNSPN-S-CNYPHFDFHSISDGLTDPSAEDSTTILITLNAK 90 (460)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (460)
++.||++++....|+-..+..+|++|+++||+|++++....... . ....++.++.++..- .........+......
T Consensus 2 ~~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~ 79 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEILSNPNITIHPLPPPP--QRLNKLPFLLFAPLKV 79 (415)
T ss_pred CccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHHhcCCCEEEEECCCCc--cccccchHHHHHHHHH
Confidence 46788888888888889999999999999999999997432211 1 234678888886321 0011111111111111
Q ss_pred cchhHHHHHHHHhhcCCCCCCCCCCceEEEEcCcc----hH-HH-HHhhcCCCeEEEeCccHHHHHHHhhcccccccCCC
Q 012563 91 CMVPFRNCLAKLVSNTNNNNAQEDSVACLITDFLW----QF-TH-VADEFKLPTIILQTHSVSGYLGIAAYPFLRDKGYV 164 (460)
Q Consensus 91 ~~~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~----~~-~~-~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (460)
.. .+...+..+.... +||+|++.... .. +. ++...++|+|.......... . ... .
T Consensus 80 ~~-~~~~~~~~l~~~~--------~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h~~~~~~--~-~~~------~- 140 (415)
T cd03816 80 LW-QFFSLLWLLYKLR--------PADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWHNYGYTI--L-ALK------L- 140 (415)
T ss_pred HH-HHHHHHHHHHhcC--------CCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcCCchHHH--H-hcc------c-
Confidence 11 1122233233221 79999985311 11 22 56667999887544311110 0 000 0
Q ss_pred CCCCCCCCCccCCCCCCCCCCCCCcccCCCCCcHHHHHHHHhhh-ccCceEEecchHHhhHHHhhcCccccCCCC--cee
Q 012563 165 PIQDPQSESPVIEYPPLRVKDIPKLETRYPEYNYPLVSAMVNNI-KASSGMIWNTFEELEQAALSTLPEEYSGIP--VFP 241 (460)
Q Consensus 165 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~s~~~le~~~~~~~~~~~~~~p--v~~ 241 (460)
............+...+ +.++.++..|...-+.- .+ .. . .+.+ +++
T Consensus 141 ---------------------------~~~~~~~~~~~~~e~~~~~~ad~ii~vS~~~~~~l-~~-~~-~-~~~ki~vI~ 189 (415)
T cd03816 141 ---------------------------GENHPLVRLAKWYEKLFGRLADYNLCVTKAMKEDL-QQ-FN-N-WKIRATVLY 189 (415)
T ss_pred ---------------------------CCCCHHHHHHHHHHHHHhhcCCEeeecCHHHHHHH-Hh-hh-c-cCCCeeecC
Confidence 00011112222222222 45677776666533211 11 00 0 1123 333
Q ss_pred ecccccCCCCCCCCccccccchhhhh----------------ccCCCCeEEEEEecccccCCHHHHHHHHHHHHhCC---
Q 012563 242 IGPFHKYFPASSSSLLSQDQSSISWL----------------DKQAPKSVIYVSFGSVAAINETEFLEIAWGLANSR--- 302 (460)
Q Consensus 242 vGpl~~~~~~~~~~~~~~~~~l~~~l----------------~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~--- 302 (460)
-|+...-.+ .+.......+. ...+++..++++.|.... .+.+..+++|+....
T Consensus 190 Ng~~~~f~p------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~grl~~--~K~~~~li~A~~~l~~~~ 261 (415)
T cd03816 190 DRPPEQFRP------LPLEEKHELFLKLAKTFLTRELRIGAVQLSEERPALLVSSTSWTP--DEDFGILLDALVAYEKSA 261 (415)
T ss_pred CCCHHHcee------CcHHHHHHHHHhccccccccccccccceecCCCceEEEEeccccC--CCCHHHHHHHHHHHHHhh
Confidence 332110000 00000000010 011234556666777554 233344444444321
Q ss_pred ------CCE-EEEECCCCCCCchhhccCchhHHhhhCCCceEE-eccchHH---HhccCCCcceee-c---cC---chhh
Q 012563 303 ------VPF-LWVVRPGLVDGVEWLEALPKGYLEMVDGRGYIV-QWAPQQQ---VLAHPAVGGFLT-H---SG---WNST 364 (460)
Q Consensus 303 ------~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vp~~~---lL~~~~~~~~I~-H---GG---~~s~ 364 (460)
.++ ++.+|.+.. ...+-+.+.+..-+++.+. .|+|..+ +|..+++ +|. + -| -+++
T Consensus 262 ~~~~~~~~i~l~ivG~G~~-----~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~ 334 (415)
T cd03816 262 ATGPKLPKLLCIITGKGPL-----KEKYLERIKELKLKKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKV 334 (415)
T ss_pred cccccCCCEEEEEEecCcc-----HHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHHH
Confidence 123 233443321 1111112211111344544 6887544 6888998 763 1 12 3579
Q ss_pred HHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCccCHHHHHHHHHHHhcc---ch-HHHHHHHHHHHH
Q 012563 365 LESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEKKEIETAIRRLMVE---AE-GQEMRERITCLK 433 (460)
Q Consensus 365 ~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~l~~~i~~ll~~---~~-~~~~~~~a~~l~ 433 (460)
.||+++|+|+|+.. .......+++. +.|..++ +.++|+++|.++++| .+ .+.+.+++++..
T Consensus 335 ~Eama~G~PVI~s~----~~~~~eiv~~~-~~G~lv~---d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 335 VDMFGCGLPVCALD----FKCIDELVKHG-ENGLVFG---DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred HHHHHcCCCEEEeC----CCCHHHHhcCC-CCEEEEC---CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 99999999999944 34566778774 7888873 799999999999987 33 456666666655
No 54
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.29 E-value=6e-09 Score=101.53 Aligned_cols=94 Identities=15% Similarity=0.228 Sum_probs=66.7
Q ss_pred CCCceEEeccchHH---HhccCCCcceeecc----CchhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCcc
Q 012563 332 DGRGYIVQWAPQQQ---VLAHPAVGGFLTHS----GWNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKL 404 (460)
Q Consensus 332 ~~~~~~~~~vp~~~---lL~~~~~~~~I~HG----G~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~ 404 (460)
.+++.+..++|+.+ ++..+++ +|..+ +.+++.||+++|+|+|+.. ....+..+++. +.|..++. -
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~----~~~~~~~i~~~-~~g~~~~~-~ 329 (374)
T cd03817 258 ADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVD----APGLPDLVADG-ENGFLFPP-G 329 (374)
T ss_pred CCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeC----CCChhhheecC-ceeEEeCC-C
Confidence 46778889998754 7888888 77443 3478999999999999854 44566777774 78888875 2
Q ss_pred CHHHHHHHHHHHhccch-HHHHHHHHHHHHH
Q 012563 405 EKKEIETAIRRLMVEAE-GQEMRERITCLKK 434 (460)
Q Consensus 405 ~~~~l~~~i~~ll~~~~-~~~~~~~a~~l~~ 434 (460)
+. ++.+++.+++++.+ .+.+++++++..+
T Consensus 330 ~~-~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 359 (374)
T cd03817 330 DE-ALAEALLRLLQDPELRRRLSKNAEESAE 359 (374)
T ss_pred CH-HHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 23 89999999998842 2234444444443
No 55
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.24 E-value=5.9e-08 Score=93.76 Aligned_cols=314 Identities=15% Similarity=0.084 Sum_probs=163.4
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCCCCCHHHHHHHHHHhcchhH
Q 012563 16 RVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNSPNSCNYPHFDFHSISDGLTDPSAEDSTTILITLNAKCMVPF 95 (460)
Q Consensus 16 ~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 95 (460)
||++++....|+......++++|.++||+|++++............+++++.++..... ......+.... .+
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~ 72 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELEALGVKVIPIPLDRRG---INPFKDLKALL-----RL 72 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCcccccccCCceEEeccccccc---cChHhHHHHHH-----HH
Confidence 57888877889999999999999999999999998644432223457777777632210 11111111110 11
Q ss_pred HHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH---HHhhcCCCeEEEeCccHHHHHHHhhcccccccCCCCCCCCCCC
Q 012563 96 RNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH---VADEFKLPTIILQTHSVSGYLGIAAYPFLRDKGYVPIQDPQSE 172 (460)
Q Consensus 96 ~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~---~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 172 (460)
...+++. +||+|++........ ++...+.|.+...........
T Consensus 73 ~~~~~~~------------~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------------------- 118 (359)
T cd03808 73 YRLLRKE------------RPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFVF---------------------- 118 (359)
T ss_pred HHHHHhc------------CCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchhh----------------------
Confidence 2222222 799999886543322 444466666654333111000
Q ss_pred CccCCCCCCCCCCCCCcccCCCCCcHHHHHHHH-hhhccCceEEecchHHhhHHHhhcCccccCC-CC-ceeecccccCC
Q 012563 173 SPVIEYPPLRVKDIPKLETRYPEYNYPLVSAMV-NNIKASSGMIWNTFEELEQAALSTLPEEYSG-IP-VFPIGPFHKYF 249 (460)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~-~p-v~~vGpl~~~~ 249 (460)
.........+.... .....++.++..+....+.- ..... .+ .. +..++ .....
T Consensus 119 -------------------~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~--~~~~~--~~~~~~~~~~~-~~~~~ 174 (359)
T cd03808 119 -------------------TSGGLKRRLYLLLERLALRFTDKVIFQNEDDRDLA--LKLGI--IKKKKTVLIPG-SGVDL 174 (359)
T ss_pred -------------------ccchhHHHHHHHHHHHHHhhccEEEEcCHHHHHHH--HHhcC--CCcCceEEecC-CCCCh
Confidence 00000111122121 22345567777765544321 11010 00 12 33333 21111
Q ss_pred CCCCCCccccccchhhhhccCCCCeEEEEEecccccC-CHHHHHHHHHHHHhC--CCCEEEEECCCCCCCchhhccCchh
Q 012563 250 PASSSSLLSQDQSSISWLDKQAPKSVIYVSFGSVAAI-NETEFLEIAWGLANS--RVPFLWVVRPGLVDGVEWLEALPKG 326 (460)
Q Consensus 250 ~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~-~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~ 326 (460)
.. ..+.. .. ...++.+++..|+.... ..+.+...+..+.+. +.++++ ++...... . ....
T Consensus 175 ~~----~~~~~----~~---~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i-~G~~~~~~-~----~~~~ 237 (359)
T cd03808 175 DR----FSPSP----EP---IPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLL-VGDGDEEN-P----AAIL 237 (359)
T ss_pred hh----cCccc----cc---cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEE-EcCCCcch-h----hHHH
Confidence 10 00000 00 12345677778876652 233333334444332 233333 33332111 0 0000
Q ss_pred -HHh-hhCCCceEEeccch-HHHhccCCCcceeeccC----chhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEe
Q 012563 327 -YLE-MVDGRGYIVQWAPQ-QQVLAHPAVGGFLTHSG----WNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLH 399 (460)
Q Consensus 327 -~~~-~~~~~~~~~~~vp~-~~lL~~~~~~~~I~HGG----~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~ 399 (460)
+.+ ...+++.+..+..+ ..++..+++ +|..+. .+++.||+++|+|+|+-+.. .+...+++. +.|..
T Consensus 238 ~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i~~~-~~g~~ 310 (359)
T cd03808 238 EIEKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREAVIDG-VNGFL 310 (359)
T ss_pred HHHhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC----CchhhhhcC-cceEE
Confidence 111 12355667776544 568999988 776543 57899999999999995443 345667763 77887
Q ss_pred eCCccCHHHHHHHHHHHhccc
Q 012563 400 LEGKLEKKEIETAIRRLMVEA 420 (460)
Q Consensus 400 ~~~~~~~~~l~~~i~~ll~~~ 420 (460)
++. -+.+++.++|.++++|+
T Consensus 311 ~~~-~~~~~~~~~i~~l~~~~ 330 (359)
T cd03808 311 VPP-GDAEALADAIERLIEDP 330 (359)
T ss_pred ECC-CCHHHHHHHHHHHHhCH
Confidence 764 57899999999999883
No 56
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.22 E-value=3.4e-08 Score=95.67 Aligned_cols=113 Identities=19% Similarity=0.226 Sum_probs=78.4
Q ss_pred hCCCceEEeccchH---HHhccCCCcceee----ccCchhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCc
Q 012563 331 VDGRGYIVQWAPQQ---QVLAHPAVGGFLT----HSGWNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGK 403 (460)
Q Consensus 331 ~~~~~~~~~~vp~~---~lL~~~~~~~~I~----HGG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~ 403 (460)
..+++.+..++++. .++..+++ +|. -|..+++.||+++|+|+|+.+. ......+++. +.|..++.
T Consensus 254 ~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~-~~g~~~~~- 325 (374)
T cd03801 254 LGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDG-ETGLLVPP- 325 (374)
T ss_pred CCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCC-cceEEeCC-
Confidence 34677888999754 47888888 774 2456799999999999998554 5567777764 88888874
Q ss_pred cCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012563 404 LEKKEIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHI 457 (460)
Q Consensus 404 ~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (460)
.+.+++.++|.+++++. ..++ ++++..++...+.-+.++..+++++.+
T Consensus 326 ~~~~~l~~~i~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (374)
T cd03801 326 GDPEALAEAILRLLDDP---ELRR---RLGEAARERVAERFSWDRVAARTEEVY 373 (374)
T ss_pred CCHHHHHHHHHHHHcCh---HHHH---HHHHHHHHHHHHhcCHHHHHHHHHHhh
Confidence 56999999999999883 3222 222222222224556777777777655
No 57
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.21 E-value=4.7e-12 Score=105.92 Aligned_cols=130 Identities=14% Similarity=0.143 Sum_probs=76.8
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCCCC-CHHHHHHHHHHh--cch
Q 012563 17 VILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNSPNSCNYPHFDFHSISDGLTDPSAE-DSTTILITLNAK--CMV 93 (460)
Q Consensus 17 il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~ 93 (460)
|+|++.|+.||++|+++||++|++|||+|++++++...+.. +..|++|++++.. ...... .....+...... ...
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v-~~~Gl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 78 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERV-EAAGLEFVPIPGD-SRLPRSLEPLANLRRLARLIRGLE 78 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHH-HHTT-EEEESSSC-GGGGHHHHHHHHHHCHHHHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecc-cccCceEEEecCC-cCcCcccchhhhhhhHHHHhhhhh
Confidence 78999999999999999999999999999999985544444 4679999999854 000000 001111111111 000
Q ss_pred hHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH-HHhhcCCCeEEEeCccHHH
Q 012563 94 PFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH-VADEFKLPTIILQTHSVSG 148 (460)
Q Consensus 94 ~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~-~A~~lgiP~v~~~~~~~~~ 148 (460)
.+.+.+.+.....-....+...+|+++.+.....+. +|+++|||++.....|.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~~ 134 (139)
T PF03033_consen 79 EAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWFA 134 (139)
T ss_dssp HHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGGS
T ss_pred HHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcCc
Confidence 111222222211000000001578888887777777 9999999999988776554
No 58
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.20 E-value=4.2e-08 Score=95.75 Aligned_cols=115 Identities=14% Similarity=0.105 Sum_probs=78.4
Q ss_pred CCCceEEeccc-hH---HHhccCCCcceeecc----CchhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCc
Q 012563 332 DGRGYIVQWAP-QQ---QVLAHPAVGGFLTHS----GWNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGK 403 (460)
Q Consensus 332 ~~~~~~~~~vp-~~---~lL~~~~~~~~I~HG----G~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~ 403 (460)
..++.+..|++ +. .++..+++ +|.-. ..+++.||+++|+|+|+... ......+.+. +.|..++.
T Consensus 243 ~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~----~~~~e~~~~~-~~g~~~~~- 314 (365)
T cd03825 243 PFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDV----GGIPDIVDHG-VTGYLAKP- 314 (365)
T ss_pred CCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecC----CCChhheeCC-CceEEeCC-
Confidence 45567778888 43 47888888 88753 35799999999999998544 3333455552 57777663
Q ss_pred cCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC
Q 012563 404 LEKKEIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHILSF 460 (460)
Q Consensus 404 ~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 460 (460)
.+.+++.+++.+++++ ++.+ .++++..++...+.-+.++..+++++..+++
T Consensus 315 ~~~~~~~~~l~~l~~~---~~~~---~~~~~~~~~~~~~~~s~~~~~~~~~~~y~~~ 365 (365)
T cd03825 315 GDPEDLAEGIEWLLAD---PDER---EELGEAARELAENEFDSRVQAKRYLSLYEEL 365 (365)
T ss_pred CCHHHHHHHHHHHHhC---HHHH---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 6789999999999988 3322 2233333333334567788888888887764
No 59
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.17 E-value=2.6e-07 Score=91.83 Aligned_cols=110 Identities=16% Similarity=0.146 Sum_probs=75.4
Q ss_pred CCceEEeccchH---HHhccCCCcceee---ccC-chhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCccC
Q 012563 333 GRGYIVQWAPQQ---QVLAHPAVGGFLT---HSG-WNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLE 405 (460)
Q Consensus 333 ~~~~~~~~vp~~---~lL~~~~~~~~I~---HGG-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~ 405 (460)
+++.+..++++. +++..+++ +|. +.| ..++.||+++|+|+|+... ......+.+. +.|..++. -+
T Consensus 283 ~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~~-~d 354 (405)
T TIGR03449 283 DRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARV----GGLPVAVADG-ETGLLVDG-HD 354 (405)
T ss_pred ceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecC----CCcHhhhccC-CceEECCC-CC
Confidence 567888998864 47889988 774 233 3589999999999999544 3455567673 77887764 58
Q ss_pred HHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 012563 406 KKEIETAIRRLMVEAE-GQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHIL 458 (460)
Q Consensus 406 ~~~l~~~i~~ll~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
.+++.++|.+++++.+ .+++++++++.. +.-+-++.+++.++...
T Consensus 355 ~~~la~~i~~~l~~~~~~~~~~~~~~~~~--------~~fsw~~~~~~~~~~y~ 400 (405)
T TIGR03449 355 PADWADALARLLDDPRTRIRMGAAAVEHA--------AGFSWAATADGLLSSYR 400 (405)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHH--------HhCCHHHHHHHHHHHHH
Confidence 8999999999998832 233444444332 23456666666666554
No 60
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.11 E-value=2e-07 Score=89.55 Aligned_cols=80 Identities=20% Similarity=0.309 Sum_probs=57.2
Q ss_pred CCceEEeccch-HHHhccCCCcceeeccC----chhhHHHHhhCCCeeecCcccchhhHHHHHHHhhc-eeEeeCCccCH
Q 012563 333 GRGYIVQWAPQ-QQVLAHPAVGGFLTHSG----WNSTLESICEGVPMICQPCLADQMVNARYVSHVWR-VGLHLEGKLEK 406 (460)
Q Consensus 333 ~~~~~~~~vp~-~~lL~~~~~~~~I~HGG----~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG-~G~~~~~~~~~ 406 (460)
+++.+..+... ..++..+++ +|.-.. -+++.||+++|+|+|+.+..+.+ ..+.+. | .|..++. -+.
T Consensus 235 ~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~~~-~~~g~~~~~-~~~ 306 (348)
T cd03820 235 DRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEIIED-GVNGLLVPN-GDV 306 (348)
T ss_pred CeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCch----Hhhhcc-CcceEEeCC-CCH
Confidence 44556666343 568888888 776642 47899999999999986544333 233332 4 7877774 678
Q ss_pred HHHHHHHHHHhccc
Q 012563 407 KEIETAIRRLMVEA 420 (460)
Q Consensus 407 ~~l~~~i~~ll~~~ 420 (460)
+++.++|.++++|.
T Consensus 307 ~~~~~~i~~ll~~~ 320 (348)
T cd03820 307 EALAEALLRLMEDE 320 (348)
T ss_pred HHHHHHHHHHHcCH
Confidence 99999999999983
No 61
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.11 E-value=4.7e-09 Score=102.76 Aligned_cols=134 Identities=19% Similarity=0.176 Sum_probs=85.1
Q ss_pred CCeEEEEEecccccC-CHHHHHHHHHHHHhCCC-CEEEEECCCCCCCchhhccCchhHHhhh--CCCceEEeccch---H
Q 012563 272 PKSVIYVSFGSVAAI-NETEFLEIAWGLANSRV-PFLWVVRPGLVDGVEWLEALPKGYLEMV--DGRGYIVQWAPQ---Q 344 (460)
Q Consensus 272 ~~~~v~vs~GS~~~~-~~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~vp~---~ 344 (460)
+++++++++|..... ..+.+..+++++..... ++.++..++.. . ...+-+.+.+.. .+++.+....++ .
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~-~---~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~ 272 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPR-T---RPRIREAGLEFLGHHPNVLLISPLGYLYFL 272 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCC-h---HHHHHHHHHhhccCCCCEEEECCcCHHHHH
Confidence 466788888876643 34567778888876533 24444433221 0 011111111111 356666655543 3
Q ss_pred HHhccCCCcceeeccCchhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCccCHHHHHHHHHHHhcc
Q 012563 345 QVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEKKEIETAIRRLMVE 419 (460)
Q Consensus 345 ~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~l~~~i~~ll~~ 419 (460)
.++..+++ ||+.+| |.+.||+++|+|+|+++...+ +..+.+. |++..+. -+.++|.++|.+++++
T Consensus 273 ~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~~~----~~~~~~~-g~~~~~~--~~~~~i~~~i~~ll~~ 337 (363)
T cd03786 273 LLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDRTE----RPETVES-GTNVLVG--TDPEAILAAIEKLLSD 337 (363)
T ss_pred HHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCCCc----cchhhhe-eeEEecC--CCHHHHHHHHHHHhcC
Confidence 46778888 999999 888899999999999874322 3344553 7776654 2689999999999998
No 62
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.10 E-value=4.9e-07 Score=87.77 Aligned_cols=113 Identities=17% Similarity=0.139 Sum_probs=77.6
Q ss_pred CCCceEEeccchH---HHhccCCCcceee----ccCchhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCcc
Q 012563 332 DGRGYIVQWAPQQ---QVLAHPAVGGFLT----HSGWNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKL 404 (460)
Q Consensus 332 ~~~~~~~~~vp~~---~lL~~~~~~~~I~----HGG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~ 404 (460)
.+++.+..++++. .++..+++ +|. -|..+++.||+++|+|+|+-+. ......+.+. +.|...+. -
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~----~~~~~~~~~~-~~g~~~~~-~ 329 (377)
T cd03798 258 EDRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDV----GGIPEIITDG-ENGLLVPP-G 329 (377)
T ss_pred cceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecC----CChHHHhcCC-cceeEECC-C
Confidence 4677888999874 47888888 663 2456789999999999998554 3455667773 77777764 6
Q ss_pred CHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC
Q 012563 405 EKKEIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHILSF 460 (460)
Q Consensus 405 ~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 460 (460)
+.+++.++|.+++++.+....+++.+.+. +.-+.+...+++.+.++++
T Consensus 330 ~~~~l~~~i~~~~~~~~~~~~~~~~~~~~--------~~~s~~~~~~~~~~~~~~l 377 (377)
T cd03798 330 DPEALAEAILRLLADPWLRLGRAARRRVA--------ERFSWENVAERLLELYREV 377 (377)
T ss_pred CHHHHHHHHHHHhcCcHHHHhHHHHHHHH--------HHhhHHHHHHHHHHHHhhC
Confidence 89999999999999832101222222222 3334667778888877653
No 63
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=99.08 E-value=4.2e-08 Score=93.05 Aligned_cols=300 Identities=14% Similarity=0.109 Sum_probs=160.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCC-CCCCCCCCceEEeCCCCCCCCCCCCHH-HHHHHHHHhcc
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNS-PNSCNYPHFDFHSISDGLTDPSAEDST-TILITLNAKCM 92 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 92 (460)
|||.|-- ...-|+.-+..+.++|.++||+|.+.+.++.. ....+..|+++..+...- .+.. ....... .
T Consensus 1 MkIwiDi-~~p~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~yg~~y~~iG~~g-----~~~~~Kl~~~~~-R-- 71 (335)
T PF04007_consen 1 MKIWIDI-THPAHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLYGIDYIVIGKHG-----DSLYGKLLESIE-R-- 71 (335)
T ss_pred CeEEEEC-CCchHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHcCCCeEEEcCCC-----CCHHHHHHHHHH-H--
Confidence 5555543 44559999999999999999999999986432 112234688888887321 1122 2222221 1
Q ss_pred hhHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH-HHhhcCCCeEEEeCccHHHHHHHhhcccccccCCCCCCCCCC
Q 012563 93 VPFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH-VADEFKLPTIILQTHSVSGYLGIAAYPFLRDKGYVPIQDPQS 171 (460)
Q Consensus 93 ~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~-~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 171 (460)
....++.+.+. +||++|+- ..+.+. +|.-+|+|+|.+.-+..........+|. ....+.|
T Consensus 72 --~~~l~~~~~~~---------~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~~~~Lt~Pl-a~~i~~P------ 132 (335)
T PF04007_consen 72 --QYKLLKLIKKF---------KPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIAQNRLTLPL-ADVIITP------ 132 (335)
T ss_pred --HHHHHHHHHhh---------CCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhccceeehhc-CCeeECC------
Confidence 11222222222 89999986 457777 9999999999987653222111110000 0000000
Q ss_pred CCccCCCCCCCCCCCCCcccCCCCCcHHHHHHHHhhhccCceEE-ecchHHhhHHHhhcCccccCCCCceeecccccCCC
Q 012563 172 ESPVIEYPPLRVKDIPKLETRYPEYNYPLVSAMVNNIKASSGMI-WNTFEELEQAALSTLPEEYSGIPVFPIGPFHKYFP 250 (460)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~s~~~le~~~~~~~~~~~~~~pv~~vGpl~~~~~ 250 (460)
... -...+.+. -.+ ..+. ++.+.|+ .|+=|+
T Consensus 133 ----------------~~~------~~~~~~~~---G~~-~~i~~y~G~~E~-----------------ayl~~F----- 164 (335)
T PF04007_consen 133 ----------------EAI------PKEFLKRF---GAK-NQIRTYNGYKEL-----------------AYLHPF----- 164 (335)
T ss_pred ----------------ccc------CHHHHHhc---CCc-CCEEEECCeeeE-----------------EeecCC-----
Confidence 000 00000000 011 1121 3333322 122111
Q ss_pred CCCCCccccccchhhhhccCCCCeEEEEEeccccc----CCHHHHHHHHHHHHhCCCCEEEEECCCCCCCchhhccCchh
Q 012563 251 ASSSSLLSQDQSSISWLDKQAPKSVIYVSFGSVAA----INETEFLEIAWGLANSRVPFLWVVRPGLVDGVEWLEALPKG 326 (460)
Q Consensus 251 ~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~----~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 326 (460)
.++.+..+-++. .+++.|++-+-+..+ -....+..+++.+++.+..++...+...+ ..+-+.
T Consensus 165 -------~Pd~~vl~~lg~-~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~~------~~~~~~ 230 (335)
T PF04007_consen 165 -------KPDPEVLKELGL-DDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYEDQ------RELFEK 230 (335)
T ss_pred -------CCChhHHHHcCC-CCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcch------hhHHhc
Confidence 112223344442 245777777766544 22345667888898877665554443321 111111
Q ss_pred HHhhhCCCceE-EeccchHHHhccCCCcceeeccCchhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCccC
Q 012563 327 YLEMVDGRGYI-VQWAPQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLE 405 (460)
Q Consensus 327 ~~~~~~~~~~~-~~~vp~~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~ 405 (460)
+ + +.+ ..-+...++|.++++ +|+=|| ....||...|+|.|.+ +.++-...-+++.+. |+- .. .-+
T Consensus 231 ~----~--~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~-Gll--~~-~~~ 296 (335)
T PF04007_consen 231 Y----G--VIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEK-GLL--YH-STD 296 (335)
T ss_pred c----C--ccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHC-CCe--Ee-cCC
Confidence 1 1 222 255566689999999 999888 7788999999999985 333433344667774 662 22 347
Q ss_pred HHHHHHHHHHHhc
Q 012563 406 KKEIETAIRRLMV 418 (460)
Q Consensus 406 ~~~l~~~i~~ll~ 418 (460)
.+++.+.+.+.+.
T Consensus 297 ~~ei~~~v~~~~~ 309 (335)
T PF04007_consen 297 PDEIVEYVRKNLG 309 (335)
T ss_pred HHHHHHHHHHhhh
Confidence 7777776655443
No 64
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.07 E-value=1.5e-07 Score=91.51 Aligned_cols=146 Identities=18% Similarity=0.130 Sum_probs=87.8
Q ss_pred CeEEEEEecccccCCHHHHHHHHHHHHhCC-CCEEEEECCCCCCCchhhccCchhH-HhhhCCCceEEeccchH---HHh
Q 012563 273 KSVIYVSFGSVAAINETEFLEIAWGLANSR-VPFLWVVRPGLVDGVEWLEALPKGY-LEMVDGRGYIVQWAPQQ---QVL 347 (460)
Q Consensus 273 ~~~v~vs~GS~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~vp~~---~lL 347 (460)
+..+++..|+... .+.+..+++++.... .++++...+.. ...+..-+ .....+|+.+..|+|+. .++
T Consensus 190 ~~~~i~~~G~~~~--~K~~~~li~a~~~l~~~~l~i~G~g~~------~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~ 261 (357)
T cd03795 190 GRPFFLFVGRLVY--YKGLDVLLEAAAALPDAPLVIVGEGPL------EAELEALAAALGLLDRVRFLGRLDDEEKAALL 261 (357)
T ss_pred CCcEEEEeccccc--ccCHHHHHHHHHhccCcEEEEEeCChh------HHHHHHHHHhcCCcceEEEcCCCCHHHHHHHH
Confidence 3445667777653 344566777777666 44444432221 01111111 11234678889999974 478
Q ss_pred ccCCCcceee---ccCc-hhhHHHHhhCCCeeecCcccchhhHHHHHHH-hhceeEeeCCccCHHHHHHHHHHHhccch-
Q 012563 348 AHPAVGGFLT---HSGW-NSTLESICEGVPMICQPCLADQMVNARYVSH-VWRVGLHLEGKLEKKEIETAIRRLMVEAE- 421 (460)
Q Consensus 348 ~~~~~~~~I~---HGG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~-~lG~G~~~~~~~~~~~l~~~i~~ll~~~~- 421 (460)
..+++-++-+ +.|. .++.||+++|+|+|+....+.. ..+.+ . +.|...+. -+.+++.++|.++++|++
T Consensus 262 ~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~----~~i~~~~-~~g~~~~~-~d~~~~~~~i~~l~~~~~~ 335 (357)
T cd03795 262 AACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGG----SYVNLHG-VTGLVVPP-GDPAALAEAIRRLLEDPEL 335 (357)
T ss_pred HhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCch----hHHhhCC-CceEEeCC-CCHHHHHHHHHHHHHCHHH
Confidence 7888833323 2343 4799999999999996544443 33333 4 67777763 589999999999999842
Q ss_pred HHHHHHHHHHH
Q 012563 422 GQEMRERITCL 432 (460)
Q Consensus 422 ~~~~~~~a~~l 432 (460)
..++++++++.
T Consensus 336 ~~~~~~~~~~~ 346 (357)
T cd03795 336 RERLGEAARER 346 (357)
T ss_pred HHHHHHHHHHH
Confidence 23344444443
No 65
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.06 E-value=2.7e-07 Score=91.56 Aligned_cols=112 Identities=12% Similarity=0.074 Sum_probs=72.2
Q ss_pred CCCceEEeccchHH---HhccCCCcceeec---cCc-hhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCcc
Q 012563 332 DGRGYIVQWAPQQQ---VLAHPAVGGFLTH---SGW-NSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKL 404 (460)
Q Consensus 332 ~~~~~~~~~vp~~~---lL~~~~~~~~I~H---GG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~ 404 (460)
.+++.+..|+|+.+ +++.+++ +|.- -|. .++.||+++|+|+|+-+..+ ....+.+ |.+.... -
T Consensus 249 ~~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~~--~~~~~~~--~ 318 (398)
T cd03796 249 QDRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLPP--DMILLAE--P 318 (398)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhheeC--CceeecC--C
Confidence 35678889998643 7888888 7642 244 49999999999999966542 3345544 4343333 3
Q ss_pred CHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 012563 405 EKKEIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHILS 459 (460)
Q Consensus 405 ~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
+.+++.+++.+++++. .-+ ..+.+..++.+.+.-+.++.+++.++..++
T Consensus 319 ~~~~l~~~l~~~l~~~---~~~---~~~~~~~~~~~~~~fs~~~~~~~~~~~y~~ 367 (398)
T cd03796 319 DVESIVRKLEEAISIL---RTG---KHDPWSFHNRVKKMYSWEDVAKRTEKVYDR 367 (398)
T ss_pred CHHHHHHHHHHHHhCh---hhh---hhHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 8899999999999862 111 122233333334566777777777776553
No 66
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.04 E-value=4.9e-07 Score=87.96 Aligned_cols=78 Identities=15% Similarity=0.210 Sum_probs=57.2
Q ss_pred CCCceEEeccchHH---HhccCCCcceeecc---C-chhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCcc
Q 012563 332 DGRGYIVQWAPQQQ---VLAHPAVGGFLTHS---G-WNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKL 404 (460)
Q Consensus 332 ~~~~~~~~~vp~~~---lL~~~~~~~~I~HG---G-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~ 404 (460)
.+++.+..|+++.+ ++..+++ +|.-. | .+++.||+++|+|+|+.+. ......+.+ +.|...+.
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~~~~~~--~~~~~~~~-- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDK----VPWQELIEY--GCGWVVDD-- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCC----CCHHHHhhc--CceEEeCC--
Confidence 36678889999544 6888888 66432 2 4689999999999999654 334444444 66766653
Q ss_pred CHHHHHHHHHHHhcc
Q 012563 405 EKKEIETAIRRLMVE 419 (460)
Q Consensus 405 ~~~~l~~~i~~ll~~ 419 (460)
+.+++.++|.+++++
T Consensus 331 ~~~~~~~~i~~l~~~ 345 (375)
T cd03821 331 DVDALAAALRRALEL 345 (375)
T ss_pred ChHHHHHHHHHHHhC
Confidence 559999999999998
No 67
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.04 E-value=5.9e-07 Score=90.20 Aligned_cols=112 Identities=13% Similarity=0.185 Sum_probs=76.3
Q ss_pred CCCceEEeccchHH---HhccC----CCcceeecc---C-chhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEee
Q 012563 332 DGRGYIVQWAPQQQ---VLAHP----AVGGFLTHS---G-WNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHL 400 (460)
Q Consensus 332 ~~~~~~~~~vp~~~---lL~~~----~~~~~I~HG---G-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~ 400 (460)
.+++.+..++++.+ +++.+ ++ ||... | -.+++||+++|+|+|+.. .......+.+. .-|..+
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~----~gg~~eiv~~~-~~G~lv 388 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATD----DGGPRDIIANC-RNGLLV 388 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeC----CCCcHHHhcCC-CcEEEe
Confidence 46667777777655 46554 55 87654 3 369999999999999954 44455666663 578777
Q ss_pred CCccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012563 401 EGKLEKKEIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHI 457 (460)
Q Consensus 401 ~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (460)
+. -++++|.++|.++++| +. ..+++++..++.+.+.-+-+..+++..+.+
T Consensus 389 ~~-~d~~~la~~i~~ll~~---~~---~~~~~~~~a~~~~~~~fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 389 DV-LDLEAIASALEDALSD---SS---QWQLWSRNGIEGVRRHYSWDAHVEKYLRIL 438 (439)
T ss_pred CC-CCHHHHHHHHHHHHhC---HH---HHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 64 6899999999999998 33 234444444444445566777777776655
No 68
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.03 E-value=3.6e-07 Score=89.36 Aligned_cols=80 Identities=20% Similarity=0.263 Sum_probs=62.6
Q ss_pred CCCceEEeccchHH---HhccCCCcceeec----------cCchhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeE
Q 012563 332 DGRGYIVQWAPQQQ---VLAHPAVGGFLTH----------SGWNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGL 398 (460)
Q Consensus 332 ~~~~~~~~~vp~~~---lL~~~~~~~~I~H----------GG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~ 398 (460)
.+++.+..++|+.+ ++..+++ +|.- |-.+++.||+++|+|+|+-+.. .++..+.+. +.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~~-~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVEDG-ETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----CchhheecC-CeeE
Confidence 46677888998644 6888888 6643 2357999999999999986553 366777774 8888
Q ss_pred eeCCccCHHHHHHHHHHHhcc
Q 012563 399 HLEGKLEKKEIETAIRRLMVE 419 (460)
Q Consensus 399 ~~~~~~~~~~l~~~i~~ll~~ 419 (460)
.++. -+.+++.++|.++++|
T Consensus 317 ~~~~-~d~~~l~~~i~~l~~~ 336 (367)
T cd05844 317 LVPE-GDVAALAAALGRLLAD 336 (367)
T ss_pred EECC-CCHHHHHHHHHHHHcC
Confidence 8874 6889999999999998
No 69
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=99.02 E-value=4.5e-08 Score=93.63 Aligned_cols=181 Identities=14% Similarity=0.057 Sum_probs=108.7
Q ss_pred CCCCceeec-ccccCCCCCCCCccccccchhhhhccCCCCeEEEEEecccccCCHHHHHHHHHHHHhCCCC-EEEEECCC
Q 012563 235 SGIPVFPIG-PFHKYFPASSSSLLSQDQSSISWLDKQAPKSVIYVSFGSVAAINETEFLEIAWGLANSRVP-FLWVVRPG 312 (460)
Q Consensus 235 ~~~pv~~vG-pl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~-~i~~~~~~ 312 (460)
++.++.||| |+...... ... + + +++++|.+--||...--...+..+.++...+..+ ..+.+...
T Consensus 142 yg~~~~~VGhPl~d~~~~-------~~~---~-~---~~~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a 207 (347)
T PRK14089 142 YQSKATYVGHPLLDEIKE-------FKK---D-L---DKEGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSF 207 (347)
T ss_pred hCCCCEEECCcHHHhhhh-------hhh---h-c---CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCC
Confidence 447788999 77543211 010 1 2 1337899999998762224444444555543321 22222222
Q ss_pred CCCCchhhccCchhHHhhhC--CCceEEeccchHHHhccCCCcceeeccCchhhHHHHhhCCCeeecCc--ccchhhHHH
Q 012563 313 LVDGVEWLEALPKGYLEMVD--GRGYIVQWAPQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPC--LADQMVNAR 388 (460)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~vp~~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~--~~DQ~~na~ 388 (460)
.. . +.+.+... ..+.+.+ .-.+++..+++ +|+-+|..|+ |++.+|+|+|+ ++ ..-|..||+
T Consensus 208 ~~--------~-~~i~~~~~~~~~~~~~~--~~~~~m~~aDl--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak 272 (347)
T PRK14089 208 FK--------G-KDLKEIYGDISEFEISY--DTHKALLEAEF--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAK 272 (347)
T ss_pred Cc--------H-HHHHHHHhcCCCcEEec--cHHHHHHhhhH--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHH
Confidence 10 0 22222121 1122222 33568999999 9999999998 99999999999 55 456889999
Q ss_pred HHH---HhhceeEee-------------CC-ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q 012563 389 YVS---HVWRVGLHL-------------EG-KLEKKEIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALG 451 (460)
Q Consensus 389 ~v~---~~lG~G~~~-------------~~-~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~ 451 (460)
++. . .|+.-.+ -. +.|++.|.+++.+ ... +++++...++++.+. +++++++.+
T Consensus 273 ~lv~~~~-igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~~i~~-~~~---~~~~~~~~~l~~~l~-----~~a~~~~A~ 342 (347)
T PRK14089 273 MFVKLKH-IGLANIFFDFLGKEPLHPELLQEFVTVENLLKAYKE-MDR---EKFFKKSKELREYLK-----HGSAKNVAK 342 (347)
T ss_pred HHHcCCe-eehHHHhcCCCcccccCchhhcccCCHHHHHHHHHH-HHH---HHHHHHHHHHHHHhc-----CCHHHHHHH
Confidence 998 5 3655544 22 6889999999987 222 456666666666553 366666655
Q ss_pred HHH
Q 012563 452 RLV 454 (460)
Q Consensus 452 ~~~ 454 (460)
.+.
T Consensus 343 ~i~ 345 (347)
T PRK14089 343 ILK 345 (347)
T ss_pred HHh
Confidence 544
No 70
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.01 E-value=4.2e-07 Score=88.37 Aligned_cols=95 Identities=14% Similarity=0.157 Sum_probs=64.2
Q ss_pred CCCceEEeccch-HHHhccCCCcceeec----cC-chhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCccC
Q 012563 332 DGRGYIVQWAPQ-QQVLAHPAVGGFLTH----SG-WNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLE 405 (460)
Q Consensus 332 ~~~~~~~~~vp~-~~lL~~~~~~~~I~H----GG-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~ 405 (460)
.+++.+..|.+. ..++..+++ +|+- -| .+++.||+++|+|+|+.- -......+.+. +.|..++. -+
T Consensus 245 ~~~v~~~g~~~~~~~~l~~ad~--~i~ps~~~e~~~~~l~EA~a~G~PvI~~~----~~~~~e~i~~~-~~g~~~~~-~~ 316 (355)
T cd03819 245 QDRVTFVGHCSDMPAAYALADI--VVSASTEPEAFGRTAVEAQAMGRPVIASD----HGGARETVRPG-ETGLLVPP-GD 316 (355)
T ss_pred cceEEEcCCcccHHHHHHhCCE--EEecCCCCCCCchHHHHHHhcCCCEEEcC----CCCcHHHHhCC-CceEEeCC-CC
Confidence 356778887553 568889998 5542 23 369999999999999854 33455667773 67888764 68
Q ss_pred HHHHHHHHHHHhc-cch-HHHHHHHHHHHHH
Q 012563 406 KKEIETAIRRLMV-EAE-GQEMRERITCLKK 434 (460)
Q Consensus 406 ~~~l~~~i~~ll~-~~~-~~~~~~~a~~l~~ 434 (460)
.+++.++|..++. +.+ ..++++++++..+
T Consensus 317 ~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~ 347 (355)
T cd03819 317 AEALAQALDQILSLLPEGRAKMFAKARMCVE 347 (355)
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 9999999976664 421 2345555554443
No 71
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.99 E-value=2e-06 Score=91.96 Aligned_cols=398 Identities=12% Similarity=0.090 Sum_probs=196.2
Q ss_pred CCCcEEEEEcCC---------------CCCChHHHHHHHHHHHhCC--CeEEEEeCCCCCCC-------C----------
Q 012563 12 RNGRRVILFPLP---------------FQGHINPMLQLGSILYSKG--FSITIIHTKFNSPN-------S---------- 57 (460)
Q Consensus 12 ~~~~~il~~~~~---------------~~GHv~p~l~lA~~L~~rG--h~V~~~~~~~~~~~-------~---------- 57 (460)
.++|.|++++.- +.|+..=.+.||++|+++| |+|.++|.....+. .
T Consensus 167 ~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~ 246 (1050)
T TIGR02468 167 EKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSE 246 (1050)
T ss_pred cCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccccccc
Confidence 457888887643 2356777899999999998 89999997432111 0
Q ss_pred ------CCCCCceEEeCCCCCCCCCCCC--HHHHHHHHHHhcchhHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchH--
Q 012563 58 ------CNYPHFDFHSISDGLTDPSAED--STTILITLNAKCMVPFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQF-- 127 (460)
Q Consensus 58 ------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~-- 127 (460)
...+|+.++.+|-+-...+... ++.++..|.+.+...+....+.+.++... .+...||+|-+.+....
T Consensus 247 ~~~~~~~~~~g~rIvRip~GP~~~~l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~--~~~~~pDvIHaHyw~sG~a 324 (1050)
T TIGR02468 247 NDGDEMGESSGAYIIRIPFGPRDKYIPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGS--GHPVWPYVIHGHYADAGDS 324 (1050)
T ss_pred cccccccCCCCeEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc--ccCCCCCEEEECcchHHHH
Confidence 1124788888885433222222 45555555544444333221222111000 00005999998864432
Q ss_pred HH-HHhhcCCCeEEEeCccHHHHHHHhhcccccccCCCCCCCCCCCCccCCCCCCCCCCCCCcccCCCCCcHHHHHHHHh
Q 012563 128 TH-VADEFKLPTIILQTHSVSGYLGIAAYPFLRDKGYVPIQDPQSESPVIEYPPLRVKDIPKLETRYPEYNYPLVSAMVN 206 (460)
Q Consensus 128 ~~-~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (460)
+. +++.+|||+|....+-........ ...+..+ ... . .....+...+.--..
T Consensus 325 a~~L~~~lgVP~V~T~HSLgr~K~~~l-----l~~g~~~------~~~-----------~-----~~~y~~~~Ri~~Ee~ 377 (1050)
T TIGR02468 325 AALLSGALNVPMVLTGHSLGRDKLEQL-----LKQGRMS------KEE-----------I-----NSTYKIMRRIEAEEL 377 (1050)
T ss_pred HHHHHHhhCCCEEEECccchhhhhhhh-----ccccccc------ccc-----------c-----ccccchHHHHHHHHH
Confidence 33 899999998886655211100000 0000000 000 0 000001111222233
Q ss_pred hhccCceEEecchHHhhHHH--hhcCccc-----------cCC-----C-C--ceeecccccC--CCCCCC---------
Q 012563 207 NIKASSGMIWNTFEELEQAA--LSTLPEE-----------YSG-----I-P--VFPIGPFHKY--FPASSS--------- 254 (460)
Q Consensus 207 ~~~~~~~~l~~s~~~le~~~--~~~~~~~-----------~~~-----~-p--v~~vGpl~~~--~~~~~~--------- 254 (460)
.+..++.++..|..+-+..+ +....+. ..+ . . |++.|-=... +.....
T Consensus 378 ~l~~Ad~VIasT~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~~~ 457 (1050)
T TIGR02468 378 SLDASEIVITSTRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGNEE 457 (1050)
T ss_pred HHHhcCEEEEeCHHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhccccc
Confidence 45778888888877765321 1111110 000 1 2 5555511111 100000
Q ss_pred ---C-ccccccchhhhhccCCCCeEEEEEecccccCCHHHHHHHHHHHHhCC-----CCEEEEECCCCCCCchh------
Q 012563 255 ---S-LLSQDQSSISWLDKQAPKSVIYVSFGSVAAINETEFLEIAWGLANSR-----VPFLWVVRPGLVDGVEW------ 319 (460)
Q Consensus 255 ---~-~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~-----~~~i~~~~~~~~~~~~~------ 319 (460)
. ..+.+.++..|+.. +++++ +++.|.... .+-+..+++|+..+. ..+.++++...... ++
T Consensus 458 ~~~~~~~~~~~~l~r~~~~-pdkpv-IL~VGRL~p--~KGi~~LIeAf~~L~~l~~~~nL~LIiG~gdd~d-~l~~~~~~ 532 (1050)
T TIGR02468 458 HPAKPDPPIWSEIMRFFTN-PRKPM-ILALARPDP--KKNITTLVKAFGECRPLRELANLTLIMGNRDDID-EMSSGSSS 532 (1050)
T ss_pred ccccccchhhHHHHhhccc-CCCcE-EEEEcCCcc--ccCHHHHHHHHHHhHhhccCCCEEEEEecCchhh-hhhccchH
Confidence 0 00112234556643 34444 345676654 334555666665432 23444555422100 00
Q ss_pred -hccCchhHHhh--hCCCceEEeccchHH---HhccCC--Ccceeec---cCc-hhhHHHHhhCCCeeecCcccchhhHH
Q 012563 320 -LEALPKGYLEM--VDGRGYIVQWAPQQQ---VLAHPA--VGGFLTH---SGW-NSTLESICEGVPMICQPCLADQMVNA 387 (460)
Q Consensus 320 -~~~~~~~~~~~--~~~~~~~~~~vp~~~---lL~~~~--~~~~I~H---GG~-~s~~eal~~GvP~v~~P~~~DQ~~na 387 (460)
...+ ....++ ..+++.+..++++.+ ++..++ .++||+- =|. .++.||+++|+|+|+-... ...
T Consensus 533 ~l~~L-~~li~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvG----G~~ 607 (1050)
T TIGR02468 533 VLTSV-LKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNG----GPV 607 (1050)
T ss_pred HHHHH-HHHHHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCC----CcH
Confidence 0001 111112 236667778887754 565552 1238774 343 6899999999999996543 333
Q ss_pred HHHHHhhceeEeeCCccCHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 012563 388 RYVSHVWRVGLHLEGKLEKKEIETAIRRLMVEAE-GQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHIL 458 (460)
Q Consensus 388 ~~v~~~lG~G~~~~~~~~~~~l~~~i~~ll~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
..++.. .-|+.++. -+++.|+++|.++++|.+ ...+.+++++..+ .-+-...+++.++.++
T Consensus 608 EII~~g-~nGlLVdP-~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~--------~FSWe~ia~~yl~~i~ 669 (1050)
T TIGR02468 608 DIHRVL-DNGLLVDP-HDQQAIADALLKLVADKQLWAECRQNGLKNIH--------LFSWPEHCKTYLSRIA 669 (1050)
T ss_pred HHhccC-CcEEEECC-CCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH--------HCCHHHHHHHHHHHHH
Confidence 455552 56777774 689999999999999832 2334444433322 2345555565555544
No 72
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.99 E-value=4.9e-07 Score=90.52 Aligned_cols=78 Identities=15% Similarity=0.226 Sum_probs=59.2
Q ss_pred eEEeccch-HHHhccCCCcceeec-----cCchhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCccCHHHH
Q 012563 336 YIVQWAPQ-QQVLAHPAVGGFLTH-----SGWNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEKKEI 409 (460)
Q Consensus 336 ~~~~~vp~-~~lL~~~~~~~~I~H-----GG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~l 409 (460)
.+.+.... ..+++.+++ ++.. ||..++.||+++|+|+|+-|...++....+.+.+. |+++... ++++|
T Consensus 305 ~l~~~~~el~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~-g~~~~~~---d~~~L 378 (425)
T PRK05749 305 LLGDTMGELGLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQA-GAAIQVE---DAEDL 378 (425)
T ss_pred EEEecHHHHHHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHC-CCeEEEC---CHHHH
Confidence 34443333 557888887 5442 34456999999999999999988888888887774 8776643 78999
Q ss_pred HHHHHHHhcc
Q 012563 410 ETAIRRLMVE 419 (460)
Q Consensus 410 ~~~i~~ll~~ 419 (460)
.++|.++++|
T Consensus 379 a~~l~~ll~~ 388 (425)
T PRK05749 379 AKAVTYLLTD 388 (425)
T ss_pred HHHHHHHhcC
Confidence 9999999998
No 73
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.99 E-value=5.8e-07 Score=88.86 Aligned_cols=91 Identities=15% Similarity=0.136 Sum_probs=64.3
Q ss_pred CCCceEEeccchH---HHhccCCCcceeecc---C-chhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCcc
Q 012563 332 DGRGYIVQWAPQQ---QVLAHPAVGGFLTHS---G-WNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKL 404 (460)
Q Consensus 332 ~~~~~~~~~vp~~---~lL~~~~~~~~I~HG---G-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~ 404 (460)
.+++.+..++|+. .++..+++ ++... | -.++.||+++|+|+|+.-. ......+.+. +.|...+ .
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~----~~~~e~i~~~-~~g~~~~--~ 349 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNS----GGPLETVVDG-ETGFLCE--P 349 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECC----CCcHHHhccC-CceEEeC--C
Confidence 4678889999975 47888888 76432 2 2578999999999999543 3344556663 6787775 3
Q ss_pred CHHHHHHHHHHHhccch-HHHHHHHHHH
Q 012563 405 EKKEIETAIRRLMVEAE-GQEMRERITC 431 (460)
Q Consensus 405 ~~~~l~~~i~~ll~~~~-~~~~~~~a~~ 431 (460)
+.+++.++|.+++++.+ ...+.+++++
T Consensus 350 ~~~~~a~~i~~l~~~~~~~~~~~~~a~~ 377 (392)
T cd03805 350 TPEEFAEAMLKLANDPDLADRMGAAGRK 377 (392)
T ss_pred CHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 89999999999998842 2334444443
No 74
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.96 E-value=3.2e-08 Score=96.95 Aligned_cols=135 Identities=15% Similarity=0.168 Sum_probs=83.0
Q ss_pred CeEEEEEecccccCCHHHHHHHHHHHHhC-----CCCEEEEECCCCCCCchhhccCchhHHhh--hCCCceEEeccch--
Q 012563 273 KSVIYVSFGSVAAINETEFLEIAWGLANS-----RVPFLWVVRPGLVDGVEWLEALPKGYLEM--VDGRGYIVQWAPQ-- 343 (460)
Q Consensus 273 ~~~v~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~vp~-- 343 (460)
+.+++++.+-.... .+.+..+++++..+ +.++++...++.. ....+.+. ..+++++.+.+++
T Consensus 197 ~~~vl~~~hr~~~~-~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~ 267 (365)
T TIGR00236 197 KRYILLTLHRRENV-GEPLENIFKAIREIVEEFEDVQIVYPVHLNPV--------VREPLHKHLGDSKRVHLIEPLEYLD 267 (365)
T ss_pred CCEEEEecCchhhh-hhHHHHHHHHHHHHHHHCCCCEEEEECCCChH--------HHHHHHHHhCCCCCEEEECCCChHH
Confidence 45666655432221 23466677776653 3455554433220 01112221 2256777766654
Q ss_pred -HHHhccCCCcceeeccCchhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCccCHHHHHHHHHHHhccchH
Q 012563 344 -QQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEKKEIETAIRRLMVEAEG 422 (460)
Q Consensus 344 -~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~l~~~i~~ll~~~~~ 422 (460)
..+++.+++ +|+-.|. .+.||+++|+|+|.++..++++. +.+. |.+..+. .++++|.+++.++++|
T Consensus 268 ~~~~l~~ad~--vv~~Sg~-~~~EA~a~g~PvI~~~~~~~~~e----~~~~-g~~~lv~--~d~~~i~~ai~~ll~~--- 334 (365)
T TIGR00236 268 FLNLAANSHL--ILTDSGG-VQEEAPSLGKPVLVLRDTTERPE----TVEA-GTNKLVG--TDKENITKAAKRLLTD--- 334 (365)
T ss_pred HHHHHHhCCE--EEECChh-HHHHHHHcCCCEEECCCCCCChH----HHhc-CceEEeC--CCHHHHHHHHHHHHhC---
Confidence 456788887 9998764 47999999999999876555542 2333 7776554 4899999999999988
Q ss_pred HHHHHHH
Q 012563 423 QEMRERI 429 (460)
Q Consensus 423 ~~~~~~a 429 (460)
...+++.
T Consensus 335 ~~~~~~~ 341 (365)
T TIGR00236 335 PDEYKKM 341 (365)
T ss_pred hHHHHHh
Confidence 5555443
No 75
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.95 E-value=1.7e-06 Score=84.27 Aligned_cols=109 Identities=21% Similarity=0.278 Sum_probs=72.9
Q ss_pred CCCceEE-eccchH---HHhccCCCcceeec------cCchhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeC
Q 012563 332 DGRGYIV-QWAPQQ---QVLAHPAVGGFLTH------SGWNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLE 401 (460)
Q Consensus 332 ~~~~~~~-~~vp~~---~lL~~~~~~~~I~H------GG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~ 401 (460)
.+++.+. .|+|+. .++..+++ +|.- |..+++.||+++|+|+|+.+..+ ...+.+. +.|..++
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~~ 317 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLVP 317 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEEc
Confidence 3566666 458863 48888888 6632 33568999999999999976644 3445553 7777776
Q ss_pred CccCHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012563 402 GKLEKKEIETAIRRLMVEAE-GQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHI 457 (460)
Q Consensus 402 ~~~~~~~l~~~i~~ll~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (460)
. -+.+++.+++.+++++.+ ..++++++++..+ + -+.++.++++.+.+
T Consensus 318 ~-~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~-------~-~s~~~~~~~~~~~~ 365 (366)
T cd03822 318 P-GDPAALAEAIRRLLADPELAQALRARAREYAR-------A-MSWERVAERYLRLL 365 (366)
T ss_pred C-CCHHHHHHHHHHHHcChHHHHHHHHHHHHHHh-------h-CCHHHHHHHHHHHh
Confidence 4 578999999999999832 2334444444333 3 45677777776654
No 76
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.92 E-value=2.2e-06 Score=83.53 Aligned_cols=155 Identities=15% Similarity=0.183 Sum_probs=87.3
Q ss_pred EEEecccccCCHHHHHHHHHHHHhCC--CCEEEEECCCCCCCchhhccCchhHH--hhhCCCceEEeccchHH---Hhcc
Q 012563 277 YVSFGSVAAINETEFLEIAWGLANSR--VPFLWVVRPGLVDGVEWLEALPKGYL--EMVDGRGYIVQWAPQQQ---VLAH 349 (460)
Q Consensus 277 ~vs~GS~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~vp~~~---lL~~ 349 (460)
++..|+... .+.+..+++++.+.. .++++ +|...... ..-+.+. ....+++.+..++++.+ ++..
T Consensus 196 i~~~G~~~~--~Kg~~~li~a~~~l~~~~~l~i-vG~~~~~~-----~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ 267 (363)
T cd04955 196 YLLVGRIVP--ENNIDDLIEAFSKSNSGKKLVI-VGNADHNT-----PYGKLLKEKAAADPRIIFVGPIYDQELLELLRY 267 (363)
T ss_pred EEEEecccc--cCCHHHHHHHHHhhccCceEEE-EcCCCCcc-----hHHHHHHHHhCCCCcEEEccccChHHHHHHHHh
Confidence 345677664 334555666666554 44443 44331111 0112222 12346778889998864 5666
Q ss_pred CCCcceeeccCc-----hhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCccCHHHHHHHHHHHhccchHHH
Q 012563 350 PAVGGFLTHSGW-----NSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEKKEIETAIRRLMVEAEGQE 424 (460)
Q Consensus 350 ~~~~~~I~HGG~-----~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~l~~~i~~ll~~~~~~~ 424 (460)
+++ ++.++-. +++.||+++|+|+|+....+ +...++.. |.. .+. .. .+.++|.+++++ .+
T Consensus 268 ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~~~~-g~~--~~~--~~-~l~~~i~~l~~~---~~ 332 (363)
T cd04955 268 AAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVLGDK-AIY--FKV--GD-DLASLLEELEAD---PE 332 (363)
T ss_pred CCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceeecCC-eeE--ecC--ch-HHHHHHHHHHhC---HH
Confidence 776 6655433 57999999999999865432 22223332 333 332 11 299999999998 32
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012563 425 MRERITCLKKNVDACLRQGGSSHQALGRLVDHI 457 (460)
Q Consensus 425 ~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (460)
. ..++++..++...+.-+.+...+++++.+
T Consensus 333 ~---~~~~~~~~~~~~~~~fs~~~~~~~~~~~y 362 (363)
T cd04955 333 E---VSAMAKAARERIREKYTWEKIADQYEELY 362 (363)
T ss_pred H---HHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 2 23344444443335566777777777654
No 77
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.89 E-value=3.7e-06 Score=81.85 Aligned_cols=110 Identities=11% Similarity=0.086 Sum_probs=72.1
Q ss_pred CCceEEeccch-HHHhccCCCcceeeccC----chhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCccCHH
Q 012563 333 GRGYIVQWAPQ-QQVLAHPAVGGFLTHSG----WNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEKK 407 (460)
Q Consensus 333 ~~~~~~~~vp~-~~lL~~~~~~~~I~HGG----~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~ 407 (460)
+++.+..+..+ ..++..+++ +|.-.. .+++.||+++|+|+|+ .|...+...+++ .|... .. -+.+
T Consensus 245 ~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~----~~~~~~~e~i~~-~g~~~--~~-~~~~ 314 (360)
T cd04951 245 NRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVA----TDAGGVREVVGD-SGLIV--PI-SDPE 314 (360)
T ss_pred CcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEE----ecCCChhhEecC-CceEe--CC-CCHH
Confidence 56777777654 568999988 665432 5789999999999998 455556666666 36554 32 5889
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 012563 408 EIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHIL 458 (460)
Q Consensus 408 ~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
++.+++.++++++ ..+++...+-++... +.-+.+...++..+..+
T Consensus 315 ~~~~~i~~ll~~~--~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~y~ 359 (360)
T cd04951 315 ALANKIDEILKMS--GEERDIIGARRERIV----KKFSINSIVQQWLTLYT 359 (360)
T ss_pred HHHHHHHHHHhCC--HHHHHHHHHHHHHHH----HhcCHHHHHHHHHHHhh
Confidence 9999999998432 344433332222222 45566666666666543
No 78
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.87 E-value=7.4e-07 Score=85.91 Aligned_cols=152 Identities=11% Similarity=0.053 Sum_probs=92.2
Q ss_pred EEEEecccccCCHHHHHHHHHHHHhCCCCEEEEECCCCCCCchhhccCchhHHhh--hCCCceEEeccchHH---HhccC
Q 012563 276 IYVSFGSVAAINETEFLEIAWGLANSRVPFLWVVRPGLVDGVEWLEALPKGYLEM--VDGRGYIVQWAPQQQ---VLAHP 350 (460)
Q Consensus 276 v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~vp~~~---lL~~~ 350 (460)
+.+..|.... .+....+++++...+.++++.-.+... ...-....+. ..+++.+..++++.+ +++.+
T Consensus 173 ~i~~~Gr~~~--~Kg~~~li~~~~~~~~~l~i~G~~~~~------~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~ 244 (335)
T cd03802 173 YLLFLGRISP--EKGPHLAIRAARRAGIPLKLAGPVSDP------DYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNA 244 (335)
T ss_pred EEEEEEeecc--ccCHHHHHHHHHhcCCeEEEEeCCCCH------HHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhC
Confidence 3345576643 334556777777777776655443221 0011111122 257778889998754 68888
Q ss_pred CCcceee----ccCc-hhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCccCHHHHHHHHHHHhccchHHHH
Q 012563 351 AVGGFLT----HSGW-NSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEKKEIETAIRRLMVEAEGQEM 425 (460)
Q Consensus 351 ~~~~~I~----HGG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~l~~~i~~ll~~~~~~~~ 425 (460)
++ ++. +-|. .++.||+++|+|+|+... ......+.+. ..|..++. .+++.+++.++++. .
T Consensus 245 d~--~v~ps~~~E~~~~~~lEAma~G~PvI~~~~----~~~~e~i~~~-~~g~l~~~---~~~l~~~l~~l~~~---~-- 309 (335)
T cd03802 245 RA--LLFPILWEEPFGLVMIEAMACGTPVIAFRR----GAVPEVVEDG-VTGFLVDS---VEELAAAVARADRL---D-- 309 (335)
T ss_pred cE--EEeCCcccCCcchHHHHHHhcCCCEEEeCC----CCchhheeCC-CcEEEeCC---HHHHHHHHHHHhcc---H--
Confidence 88 553 2343 589999999999998544 4444556562 46777763 99999999998765 1
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012563 426 RERITCLKKNVDACLRQGGSSHQALGRLVDHI 457 (460)
Q Consensus 426 ~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (460)
++++++.. . +.-+.++.+++.++..
T Consensus 310 ~~~~~~~~---~----~~~s~~~~~~~~~~~y 334 (335)
T cd03802 310 RAACRRRA---E----RRFSAARMVDDYLALY 334 (335)
T ss_pred HHHHHHHH---H----HhCCHHHHHHHHHHHh
Confidence 23333222 1 3456777777766654
No 79
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.83 E-value=6.7e-06 Score=79.83 Aligned_cols=81 Identities=19% Similarity=0.261 Sum_probs=60.2
Q ss_pred CCCceEEeccchH---HHhccCCCcceeec----------cCchhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeE
Q 012563 332 DGRGYIVQWAPQQ---QVLAHPAVGGFLTH----------SGWNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGL 398 (460)
Q Consensus 332 ~~~~~~~~~vp~~---~lL~~~~~~~~I~H----------GG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~ 398 (460)
.+++.+..++|+. .++..+++ +|.- |.-+++.||+++|+|+|+.+..+ ....+++. ..|.
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i~~~-~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELVEDG-ETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhhhCC-CceE
Confidence 4677888999754 37778888 6662 33478999999999999865432 33455552 5887
Q ss_pred eeCCccCHHHHHHHHHHHhccc
Q 012563 399 HLEGKLEKKEIETAIRRLMVEA 420 (460)
Q Consensus 399 ~~~~~~~~~~l~~~i~~ll~~~ 420 (460)
.++. -+.+++.++|.+++++.
T Consensus 308 ~~~~-~~~~~l~~~i~~~~~~~ 328 (355)
T cd03799 308 LVPP-GDPEALADAIERLLDDP 328 (355)
T ss_pred EeCC-CCHHHHHHHHHHHHhCH
Confidence 7763 58999999999999883
No 80
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.82 E-value=1.3e-05 Score=77.60 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=71.6
Q ss_pred CCceEEeccch-HHHhccCCCcceeeccC----chhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCccCHH
Q 012563 333 GRGYIVQWAPQ-QQVLAHPAVGGFLTHSG----WNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEKK 407 (460)
Q Consensus 333 ~~~~~~~~vp~-~~lL~~~~~~~~I~HGG----~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~ 407 (460)
+++.+...... ..++..+++ +|..+. .+++.||+++|+|+|+. |...+...+.+. |.. ++. -+.+
T Consensus 251 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~----~~~~~~e~~~~~-g~~--~~~-~~~~ 320 (365)
T cd03807 251 DKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVAT----DVGDNAELVGDT-GFL--VPP-GDPE 320 (365)
T ss_pred ceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEc----CCCChHHHhhcC-CEE--eCC-CCHH
Confidence 45555554443 568999988 886554 37999999999999984 444455555552 443 442 4789
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012563 408 EIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHI 457 (460)
Q Consensus 408 ~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (460)
++.++|.+++++ . +..+++++..++.+++.-+.++..+++.+..
T Consensus 321 ~l~~~i~~l~~~---~---~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y 364 (365)
T cd03807 321 ALAEAIEALLAD---P---ALRQALGEAARERIEENFSIEAMVEAYEELY 364 (365)
T ss_pred HHHHHHHHHHhC---h---HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 999999999988 2 2233334444444445567777777776654
No 81
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.81 E-value=5.4e-06 Score=81.81 Aligned_cols=164 Identities=12% Similarity=0.087 Sum_probs=95.4
Q ss_pred eEEEEEecccccCCHHHHHHHHHHHHhC--CCCEEEEECCCCCCCchhhccCchhHHhh---h---CCCceEE-eccchH
Q 012563 274 SVIYVSFGSVAAINETEFLEIAWGLANS--RVPFLWVVRPGLVDGVEWLEALPKGYLEM---V---DGRGYIV-QWAPQQ 344 (460)
Q Consensus 274 ~~v~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~-~~vp~~ 344 (460)
..+++..|.... .+.+..+++++... +.+++++.++..... +-+.+.+. . .+++... .++++.
T Consensus 201 ~~~i~~~Grl~~--~Kg~~~li~a~~~l~~~~~l~i~g~g~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 272 (388)
T TIGR02149 201 RPYILFVGRITR--QKGVPHLLDAVHYIPKDVQVVLCAGAPDTPE------VAEEVRQAVALLDRNRTGIIWINKMLPKE 272 (388)
T ss_pred ceEEEEEccccc--ccCHHHHHHHHHHHhhcCcEEEEeCCCCcHH------HHHHHHHHHHHhccccCceEEecCCCCHH
Confidence 344556677653 33455566666654 455555544332110 11122211 1 1234433 567754
Q ss_pred ---HHhccCCCcceeec----cCchhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCccCH------HHHHH
Q 012563 345 ---QVLAHPAVGGFLTH----SGWNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEK------KEIET 411 (460)
Q Consensus 345 ---~lL~~~~~~~~I~H----GG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~------~~l~~ 411 (460)
.++..+++ +|.- |...++.||+++|+|+|+.. -......+++. +.|..++. -+. +++.+
T Consensus 273 ~~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~----~~~~~e~i~~~-~~G~~~~~-~~~~~~~~~~~l~~ 344 (388)
T TIGR02149 273 ELVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASA----TGGIPEVVVDG-ETGFLVPP-DNSDADGFQAELAK 344 (388)
T ss_pred HHHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeC----CCCHHHHhhCC-CceEEcCC-CCCcccchHHHHHH
Confidence 47888988 7753 22357799999999999954 34466677774 77888864 233 89999
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 012563 412 AIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHILS 459 (460)
Q Consensus 412 ~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
+|.++++|. +. .+++++..++...+.-+.+...+++++.+++
T Consensus 345 ~i~~l~~~~---~~---~~~~~~~a~~~~~~~~s~~~~~~~~~~~y~~ 386 (388)
T TIGR02149 345 AINILLADP---EL---AKKMGIAGRKRAEEEFSWGSIAKKTVEMYRK 386 (388)
T ss_pred HHHHHHhCH---HH---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999883 22 2223333332222445677778888777765
No 82
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.80 E-value=4.2e-06 Score=80.46 Aligned_cols=79 Identities=15% Similarity=0.181 Sum_probs=57.4
Q ss_pred CCceEEeccch-HHHhccCCCcceeec----cCchhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCccCHH
Q 012563 333 GRGYIVQWAPQ-QQVLAHPAVGGFLTH----SGWNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEKK 407 (460)
Q Consensus 333 ~~~~~~~~vp~-~~lL~~~~~~~~I~H----GG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~ 407 (460)
+++.+..+++. .+++..+++ +|.- |..+++.||+++|+|+|+.. -......+++. +.|...+. -+.+
T Consensus 246 ~~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~----~~~~~e~i~~~-~~g~~~~~-~~~~ 317 (353)
T cd03811 246 DRVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATD----CPGPREILEDG-ENGLLVPV-GDEA 317 (353)
T ss_pred ccEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcC----CCChHHHhcCC-CceEEECC-CCHH
Confidence 56677788775 568999988 7643 33578999999999999843 34666778884 88888874 5677
Q ss_pred HH---HHHHHHHhcc
Q 012563 408 EI---ETAIRRLMVE 419 (460)
Q Consensus 408 ~l---~~~i~~ll~~ 419 (460)
.+ .+++.+++++
T Consensus 318 ~~~~~~~~i~~~~~~ 332 (353)
T cd03811 318 ALAAAALALLDLLLD 332 (353)
T ss_pred HHHHHHHHHHhccCC
Confidence 77 5666666666
No 83
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.78 E-value=2.1e-06 Score=83.93 Aligned_cols=148 Identities=16% Similarity=0.176 Sum_probs=85.3
Q ss_pred eEEEEEecccccCCHHHHHHHHHHHHhCCCCE-EEEECCCCCCCchhhccCchhHHh-hhCCCceEEeccch-----HHH
Q 012563 274 SVIYVSFGSVAAINETEFLEIAWGLANSRVPF-LWVVRPGLVDGVEWLEALPKGYLE-MVDGRGYIVQWAPQ-----QQV 346 (460)
Q Consensus 274 ~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~vp~-----~~l 346 (460)
+.+++..|.......+.+..+++++......+ ++.+|.+.. .+.+-+...+ ..++++.+..|+++ .+.
T Consensus 180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~~-----~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~ 254 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGSD-----FEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQK 254 (359)
T ss_pred CcEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCcc-----HHHHHHHHHHcCCCCeEEEecccCCcHHHHHHH
Confidence 34556677754322344566667776553232 333443321 0111111111 22467788888754 224
Q ss_pred hccCCCcceeec----cCchhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCccCHHHHHHHHHHHhccch-
Q 012563 347 LAHPAVGGFLTH----SGWNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEKKEIETAIRRLMVEAE- 421 (460)
Q Consensus 347 L~~~~~~~~I~H----GG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~l~~~i~~ll~~~~- 421 (460)
+..+++ +|.. |--.++.||+++|+|+|+.-. .......+++. ..|..++. -+.+++.++|.++++|.+
T Consensus 255 ~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~---~~g~~eiv~~~-~~G~lv~~-~d~~~la~~i~~l~~~~~~ 327 (359)
T PRK09922 255 IKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDC---MSGPRDIIKPG-LNGELYTP-GNIDEFVGKLNKVISGEVK 327 (359)
T ss_pred HhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCC---CCChHHHccCC-CceEEECC-CCHHHHHHHHHHHHhCccc
Confidence 555677 6653 325799999999999998541 22233456663 66877764 699999999999999853
Q ss_pred --HHHHHHHHHHHH
Q 012563 422 --GQEMRERITCLK 433 (460)
Q Consensus 422 --~~~~~~~a~~l~ 433 (460)
....+++++++.
T Consensus 328 ~~~~~~~~~~~~~~ 341 (359)
T PRK09922 328 YQHDAIPNSIERFY 341 (359)
T ss_pred CCHHHHHHHHHHhh
Confidence 233444444444
No 84
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.75 E-value=1.1e-05 Score=79.32 Aligned_cols=113 Identities=14% Similarity=0.103 Sum_probs=76.3
Q ss_pred CCceEEeccch-HHHhccCCCcceee--c--cCchhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCccCHH
Q 012563 333 GRGYIVQWAPQ-QQVLAHPAVGGFLT--H--SGWNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEKK 407 (460)
Q Consensus 333 ~~~~~~~~vp~-~~lL~~~~~~~~I~--H--GG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~ 407 (460)
+++.+..+..+ ..++..+++ +|. + |--+++.||+++|+|+|+-.. ..+...+++. ..|..++. -+.+
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~----~g~~e~i~~~-~~g~~~~~-~d~~ 326 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAV----GGNPELVQHG-VTGALVPP-GDAV 326 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCC----CCcHHHhcCC-CceEEeCC-CCHH
Confidence 44455555443 568999998 773 3 335799999999999999554 3456677673 67877764 5889
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 012563 408 EIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHILS 459 (460)
Q Consensus 408 ~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
++.++|.+++++ +..+ .++++..++.+.+.-+.+..+++..+..++
T Consensus 327 ~la~~i~~l~~~---~~~~---~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~ 372 (374)
T TIGR03088 327 ALARALQPYVSD---PAAR---RAHGAAGRARAEQQFSINAMVAAYAGLYDQ 372 (374)
T ss_pred HHHHHHHHHHhC---HHHH---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999999999987 3222 233333333333556777778887777654
No 85
>PLN02275 transferase, transferring glycosyl groups
Probab=98.75 E-value=1.8e-05 Score=77.75 Aligned_cols=75 Identities=13% Similarity=0.217 Sum_probs=54.7
Q ss_pred CCceEEe-ccchHH---HhccCCCcceee-c-----cC-chhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeC
Q 012563 333 GRGYIVQ-WAPQQQ---VLAHPAVGGFLT-H-----SG-WNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLE 401 (460)
Q Consensus 333 ~~~~~~~-~vp~~~---lL~~~~~~~~I~-H-----GG-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~ 401 (460)
+|+.+.. |+|+.+ +|+.+++ +|. + -| -+++.||+++|+|+|+... ..+...+++. +.|..++
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv~~g-~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELVKDG-KNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHccCC-CCeEEEC
Confidence 4455554 788755 5889998 773 1 12 3579999999999999643 3366777774 7898886
Q ss_pred CccCHHHHHHHHHHHh
Q 012563 402 GKLEKKEIETAIRRLM 417 (460)
Q Consensus 402 ~~~~~~~l~~~i~~ll 417 (460)
++++|.++|.+++
T Consensus 359 ---~~~~la~~i~~l~ 371 (371)
T PLN02275 359 ---SSSELADQLLELL 371 (371)
T ss_pred ---CHHHHHHHHHHhC
Confidence 5889999998875
No 86
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.72 E-value=3.7e-05 Score=76.33 Aligned_cols=115 Identities=11% Similarity=0.193 Sum_probs=82.7
Q ss_pred CCCceEEeccchHH---HhccCCCcceeec---------cCc-hhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeE
Q 012563 332 DGRGYIVQWAPQQQ---VLAHPAVGGFLTH---------SGW-NSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGL 398 (460)
Q Consensus 332 ~~~~~~~~~vp~~~---lL~~~~~~~~I~H---------GG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~ 398 (460)
.+++.+..|+|+.+ ++..+++ ||.- -|. +++.||+++|+|+|+... ......+++. ..|.
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~----~g~~E~v~~~-~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLH----SGIPELVEAD-KSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCC----CCchhhhcCC-CceE
Confidence 46778889999754 7888888 7753 244 578999999999999644 3345566663 6787
Q ss_pred eeCCccCHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC
Q 012563 399 HLEGKLEKKEIETAIRRLMV-EAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHILSF 460 (460)
Q Consensus 399 ~~~~~~~~~~l~~~i~~ll~-~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 460 (460)
.++. -+.+++.++|.++++ | .+ ..+++++..++.+.+.-+.+...+++.+.++.+
T Consensus 351 lv~~-~d~~~la~ai~~l~~~d---~~---~~~~~~~~ar~~v~~~f~~~~~~~~l~~~~~~~ 406 (406)
T PRK15427 351 LVPE-NDAQALAQRLAAFSQLD---TD---ELAPVVKRAREKVETDFNQQVINRELASLLQAL 406 (406)
T ss_pred EeCC-CCHHHHHHHHHHHHhCC---HH---HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 7764 689999999999998 7 22 223344444444445667888889888888764
No 87
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.72 E-value=5.6e-06 Score=82.13 Aligned_cols=71 Identities=17% Similarity=0.222 Sum_probs=52.2
Q ss_pred EeccchHHHhccCCCcceeecc----CchhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCccCHHHHHHHH
Q 012563 338 VQWAPQQQVLAHPAVGGFLTHS----GWNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEKKEIETAI 413 (460)
Q Consensus 338 ~~~vp~~~lL~~~~~~~~I~HG----G~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~l~~~i 413 (460)
..+.+..+++...++ ||.-+ =.++++||+++|+|+|+.-..+ + ..+.+. +-|...+ +.+++.+++
T Consensus 289 ~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~~-~ng~~~~---~~~~~a~ai 357 (462)
T PLN02846 289 PGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQF-PNCRTYD---DGKGFVRAT 357 (462)
T ss_pred CCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeecC-CceEecC---CHHHHHHHH
Confidence 355666779999988 98774 3478999999999999965443 2 444442 5554443 788999999
Q ss_pred HHHhcc
Q 012563 414 RRLMVE 419 (460)
Q Consensus 414 ~~ll~~ 419 (460)
.++|++
T Consensus 358 ~~~l~~ 363 (462)
T PLN02846 358 LKALAE 363 (462)
T ss_pred HHHHcc
Confidence 999986
No 88
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.69 E-value=1.4e-05 Score=80.60 Aligned_cols=184 Identities=14% Similarity=0.136 Sum_probs=97.7
Q ss_pred CCCCceeec-ccccCCCCCCCCccccccchhhhhccCCCCeEEEEEecccccCCHHHHHHHHHHHH--hC--CCCEEEEE
Q 012563 235 SGIPVFPIG-PFHKYFPASSSSLLSQDQSSISWLDKQAPKSVIYVSFGSVAAINETEFLEIAWGLA--NS--RVPFLWVV 309 (460)
Q Consensus 235 ~~~pv~~vG-pl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~--~~--~~~~i~~~ 309 (460)
.+.|+.||| |+....+. .++.++..+-+.-.+++++|-+-.||-..-=...+..++++.+ .. +.++++..
T Consensus 379 ~gv~v~yVGHPL~d~i~~-----~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~fvvp~ 453 (608)
T PRK01021 379 SPLRTVYLGHPLVETISS-----FSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQLLVSS 453 (608)
T ss_pred cCCCeEEECCcHHhhccc-----CCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeEEEEec
Confidence 458899999 88765321 1122223333333346789999999977622233444566655 33 33454432
Q ss_pred CCCCCCCchhhccCchhHHhhhC-C---CceEEeccchHHHhccCCCcceeeccCchhhHHHHhhCCCeeecC-cccchh
Q 012563 310 RPGLVDGVEWLEALPKGYLEMVD-G---RGYIVQWAPQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQP-CLADQM 384 (460)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~vp~~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P-~~~DQ~ 384 (460)
.... ..+.+++... . .+.+..--...+++..|++ .+.-+| ..|+|+...|+|||++= ...=-.
T Consensus 454 a~~~---------~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSG-TaTLEaAL~g~PmVV~YK~s~Lty 521 (608)
T PRK01021 454 ANPK---------YDHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCG-TIVLETALNQTPTIVTCQLRPFDT 521 (608)
T ss_pred Cchh---------hHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCC-HHHHHHHHhCCCEEEEEecCHHHH
Confidence 2221 0111222111 1 1122210012578999998 888777 67899999999999842 221122
Q ss_pred hHHHHHHH---h-h-----ceeEee----C--C-ccCHHHHHHHHHHHhccch-HHHHHHHHHHHHHHH
Q 012563 385 VNARYVSH---V-W-----RVGLHL----E--G-KLEKKEIETAIRRLMVEAE-GQEMRERITCLKKNV 436 (460)
Q Consensus 385 ~na~~v~~---~-l-----G~G~~~----~--~-~~~~~~l~~~i~~ll~~~~-~~~~~~~a~~l~~~~ 436 (460)
..|+++.+ . . =+|..+ - . +.|++.|.+++ ++|.|++ .+++++..+++.+.+
T Consensus 522 ~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d~~~r~~~~~~l~~lr~~L 589 (608)
T PRK01021 522 FLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKTSQSKEKQKDACRDLYQAM 589 (608)
T ss_pred HHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHh
Confidence 34555544 0 0 111221 1 1 57899999997 7887732 234444444444444
No 89
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.67 E-value=2.3e-05 Score=76.96 Aligned_cols=113 Identities=18% Similarity=0.202 Sum_probs=72.8
Q ss_pred CCCceEEecc--ch---HHHhccCCCcceeecc---C-chhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCC
Q 012563 332 DGRGYIVQWA--PQ---QQVLAHPAVGGFLTHS---G-WNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEG 402 (460)
Q Consensus 332 ~~~~~~~~~v--p~---~~lL~~~~~~~~I~HG---G-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~ 402 (460)
.+++.+..+. ++ ..+++.+++ |+.-. | -.++.||+++|+|+|+.... .....+.+. ..|..++
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i~~~-~~g~~~~- 322 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQIEDG-ETGFLVD- 322 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCC----CchhhcccC-CceEEeC-
Confidence 3566777776 43 247788888 88643 2 35999999999999995543 334456663 6676554
Q ss_pred ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC
Q 012563 403 KLEKKEIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHILSF 460 (460)
Q Consensus 403 ~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 460 (460)
+.+.+..+|.+++++ .+.++ ++++..++.+.+.-+.+..++++++.++++
T Consensus 323 --~~~~~a~~i~~ll~~---~~~~~---~~~~~a~~~~~~~~s~~~~~~~~~~~~~~~ 372 (372)
T cd03792 323 --TVEEAAVRILYLLRD---PELRR---KMGANAREHVRENFLITRHLKDYLYLISKL 372 (372)
T ss_pred --CcHHHHHHHHHHHcC---HHHHH---HHHHHHHHHHHHHcCHHHHHHHHHHHHHhC
Confidence 466788899999987 33332 222222222224456788888888877653
No 90
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.67 E-value=1.8e-06 Score=84.18 Aligned_cols=130 Identities=18% Similarity=0.185 Sum_probs=80.9
Q ss_pred CCeEEEEEecccc--c-CCHHHHHHHHHHHHhCCCCEEEEECCCCCCCchhhccCchhHHhhh--CCCceEEecc---ch
Q 012563 272 PKSVIYVSFGSVA--A-INETEFLEIAWGLANSRVPFLWVVRPGLVDGVEWLEALPKGYLEMV--DGRGYIVQWA---PQ 343 (460)
Q Consensus 272 ~~~~v~vs~GS~~--~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v---p~ 343 (460)
+++.++|++=... . ...+.+..+++++...+.++++++.... ...+ .+-+.+.+.. .+++.+.+-+ ..
T Consensus 200 ~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~-p~~~---~i~~~i~~~~~~~~~v~l~~~l~~~~~ 275 (365)
T TIGR03568 200 DKPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNAD-AGSR---IINEAIEEYVNEHPNFRLFKSLGQERY 275 (365)
T ss_pred CCCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCC-CCch---HHHHHHHHHhcCCCCEEEECCCChHHH
Confidence 4578888885543 3 3457788999999887766666654332 1100 0111222211 3567777544 45
Q ss_pred HHHhccCCCcceeeccCchhhHHHHhhCCCeeecCcccchhhHHHHHHHhhcee-EeeCCccCHHHHHHHHHHHhc
Q 012563 344 QQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVG-LHLEGKLEKKEIETAIRRLMV 418 (460)
Q Consensus 344 ~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G-~~~~~~~~~~~l~~~i~~ll~ 418 (460)
..+++++++ +|+-++.|- .||.+.|+|.|.+- +-+ .-++. |.. +.+ ..++++|.+++.++++
T Consensus 276 l~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~---e~~~~--g~nvl~v--g~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 276 LSLLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ---KGRLR--ADSVIDV--DPDKEEIVKAIEKLLD 338 (365)
T ss_pred HHHHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc---hhhhh--cCeEEEe--CCCHHHHHHHHHHHhC
Confidence 668999999 998886555 99999999999764 211 11222 333 223 3688999999999554
No 91
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.64 E-value=1.7e-05 Score=76.57 Aligned_cols=196 Identities=21% Similarity=0.204 Sum_probs=110.2
Q ss_pred CCCCceeec-ccccCCCCCCCCccccccchhhhhccCCCCeEEEEEecccccCCHHHHHHHHHHHHh---C--CCCEEEE
Q 012563 235 SGIPVFPIG-PFHKYFPASSSSLLSQDQSSISWLDKQAPKSVIYVSFGSVAAINETEFLEIAWGLAN---S--RVPFLWV 308 (460)
Q Consensus 235 ~~~pv~~vG-pl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~---~--~~~~i~~ 308 (460)
.+.++.||| |+...... ........+.+ -.+++++|.+--||-..-=...+..++++.+. . +.++++.
T Consensus 151 ~g~~~~~VGHPl~d~~~~-----~~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp 224 (373)
T PF02684_consen 151 HGVPVTYVGHPLLDEVKP-----EPDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVP 224 (373)
T ss_pred cCCCeEEECCcchhhhcc-----CCCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 457899999 88775433 11111122332 22478999999999776112223334444432 2 3455554
Q ss_pred ECCCCCCCchhhccCchhHHhhhCCCceEEec-cchHHHhccCCCcceeeccCchhhHHHHhhCCCeeecC-cccchhhH
Q 012563 309 VRPGLVDGVEWLEALPKGYLEMVDGRGYIVQW-APQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQP-CLADQMVN 386 (460)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-vp~~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P-~~~DQ~~n 386 (460)
..... ....-.........++.+.-. -.-.+++..+++ .+.-.| ..|+|+...|+|||++= ...=-...
T Consensus 225 ~a~~~------~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~--al~~SG-TaTLE~Al~g~P~Vv~Yk~~~lt~~i 295 (373)
T PF02684_consen 225 VAPEV------HEELIEEILAEYPPDVSIVIIEGESYDAMAAADA--ALAASG-TATLEAALLGVPMVVAYKVSPLTYFI 295 (373)
T ss_pred cCCHH------HHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcc--hhhcCC-HHHHHHHHhCCCEEEEEcCcHHHHHH
Confidence 43322 111011111122222233222 234668888988 776666 67899999999999842 33333445
Q ss_pred HHHHHHhhce-eEe-------e-C---C-ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 012563 387 ARYVSHVWRV-GLH-------L-E---G-KLEKKEIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQA 449 (460)
Q Consensus 387 a~~v~~~lG~-G~~-------~-~---~-~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~ 449 (460)
|+++.+ ... |+. + + . +.|++.|.+++.++++| .+.++..+...+.+++..+.|.++..+
T Consensus 296 ak~lvk-~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (373)
T PF02684_consen 296 AKRLVK-VKYISLPNIIAGREVVPELIQEDATPENIAAELLELLEN---PEKRKKQKELFREIRQLLGPGASSRAA 367 (373)
T ss_pred HHHhhc-CCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHhhhhccCCHHH
Confidence 666655 232 111 1 1 1 68999999999999999 444555555556666555566665544
No 92
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.61 E-value=3.7e-05 Score=76.21 Aligned_cols=110 Identities=19% Similarity=0.178 Sum_probs=72.9
Q ss_pred CCceEEeccch-HHHhccCCCccee--ec--cCc-hhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCccCH
Q 012563 333 GRGYIVQWAPQ-QQVLAHPAVGGFL--TH--SGW-NSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEK 406 (460)
Q Consensus 333 ~~~~~~~~vp~-~~lL~~~~~~~~I--~H--GG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~ 406 (460)
+++.+..+++. ..++..+++ +| ++ .|. +.+.||+++|+|+|+.+...+.. .+.. |.|..+. -+.
T Consensus 280 ~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~~-~~g~lv~--~~~ 349 (397)
T TIGR03087 280 PGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DALP-GAELLVA--ADP 349 (397)
T ss_pred CCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----cccC-CcceEeC--CCH
Confidence 56788899886 458889988 76 32 354 46999999999999987643321 1232 6676665 489
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 012563 407 KEIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHIL 458 (460)
Q Consensus 407 ~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
+++.++|.++++|. .. .+++++..++-+.+.-+-++.++++.+.++
T Consensus 350 ~~la~ai~~ll~~~---~~---~~~~~~~ar~~v~~~fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 350 ADFAAAILALLANP---AE---REELGQAARRRVLQHYHWPRNLARLDALLE 395 (397)
T ss_pred HHHHHHHHHHHcCH---HH---HHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 99999999999983 22 222333333333344566777777766654
No 93
>PLN00142 sucrose synthase
Probab=98.61 E-value=5.5e-05 Score=79.41 Aligned_cols=77 Identities=14% Similarity=0.232 Sum_probs=50.5
Q ss_pred CCceEEe----ccchHHHhc----cCCCcceeec---cCc-hhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEee
Q 012563 333 GRGYIVQ----WAPQQQVLA----HPAVGGFLTH---SGW-NSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHL 400 (460)
Q Consensus 333 ~~~~~~~----~vp~~~lL~----~~~~~~~I~H---GG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~ 400 (460)
+++.+.. .++..+++. .+++ ||.- -|. .++.||+++|+|+|+-. .......|++. .-|..+
T Consensus 642 ~~V~flG~~~~~~~~~eLyr~iadaaDV--fVlPS~~EgFGLvvLEAMA~GlPVVATd----vGG~~EIV~dG-~tG~LV 714 (815)
T PLN00142 642 GQFRWIAAQTNRVRNGELYRYIADTKGA--FVQPALYEAFGLTVVEAMTCGLPTFATC----QGGPAEIIVDG-VSGFHI 714 (815)
T ss_pred CcEEEcCCcCCcccHHHHHHHHHhhCCE--EEeCCcccCCCHHHHHHHHcCCCEEEcC----CCCHHHHhcCC-CcEEEe
Confidence 5555443 333345544 2345 7753 454 48999999999999944 34456667773 568888
Q ss_pred CCccCHHHHHHHHHHHh
Q 012563 401 EGKLEKKEIETAIRRLM 417 (460)
Q Consensus 401 ~~~~~~~~l~~~i~~ll 417 (460)
+. -++++++++|.+++
T Consensus 715 ~P-~D~eaLA~aI~~lL 730 (815)
T PLN00142 715 DP-YHGDEAANKIADFF 730 (815)
T ss_pred CC-CCHHHHHHHHHHHH
Confidence 75 57888888887654
No 94
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.57 E-value=0.00026 Score=74.44 Aligned_cols=79 Identities=14% Similarity=0.164 Sum_probs=53.4
Q ss_pred CCceEEecc-ch---HHHhcc-CC-Ccceeec---cC-chhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCC
Q 012563 333 GRGYIVQWA-PQ---QQVLAH-PA-VGGFLTH---SG-WNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEG 402 (460)
Q Consensus 333 ~~~~~~~~v-p~---~~lL~~-~~-~~~~I~H---GG-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~ 402 (460)
+++.+..+. +. .+++.+ ++ .++||.- =| -.|+.||+++|+|+|+- +.......|++. .-|..++.
T Consensus 619 g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT----~~GG~~EiV~dg-~tGfLVdp 693 (784)
T TIGR02470 619 GQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFAT----RFGGPLEIIQDG-VSGFHIDP 693 (784)
T ss_pred CeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEc----CCCCHHHHhcCC-CcEEEeCC
Confidence 666766653 32 345543 22 1237753 23 35999999999999994 444566677773 67888875
Q ss_pred ccCHHHHHHHHHHHh
Q 012563 403 KLEKKEIETAIRRLM 417 (460)
Q Consensus 403 ~~~~~~l~~~i~~ll 417 (460)
-++++++++|.+++
T Consensus 694 -~D~eaLA~aL~~ll 707 (784)
T TIGR02470 694 -YHGEEAAEKIVDFF 707 (784)
T ss_pred -CCHHHHHHHHHHHH
Confidence 68899999999876
No 95
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.52 E-value=7.6e-05 Score=71.38 Aligned_cols=329 Identities=15% Similarity=0.158 Sum_probs=181.3
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEe-CCCCCCCCCCC--CCceEEeCCCCCCCCCCCCHHHHHHHHHHhc
Q 012563 17 VILFPLPFQGHINPMLQLGSILYSK--GFSITIIH-TKFNSPNSCNY--PHFDFHSISDGLTDPSAEDSTTILITLNAKC 91 (460)
Q Consensus 17 il~~~~~~~GHv~p~l~lA~~L~~r--Gh~V~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (460)
.+-+=.-|.|-++-.++|.++|.++ +..+++-+ |+...+..... ..+.+.-+|-+++
T Consensus 51 ~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~v~h~YlP~D~~------------------ 112 (419)
T COG1519 51 LVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGDSVIHQYLPLDLP------------------ 112 (419)
T ss_pred eEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCCCeEEEecCcCch------------------
Confidence 3344445889999999999999999 78887776 43333222211 1245555552211
Q ss_pred chhHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH---HHhhcCCCeEEEeCccHHHHHHHhhcccccccCCCCCCC
Q 012563 92 MVPFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH---VADEFKLPTIILQTHSVSGYLGIAAYPFLRDKGYVPIQD 168 (460)
Q Consensus 92 ~~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~---~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 168 (460)
..++..++.+ +||++|.--...|-. -+++.|+|.+.+.. +.+..
T Consensus 113 -~~v~rFl~~~------------~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNa-------------RLS~r------- 159 (419)
T COG1519 113 -IAVRRFLRKW------------RPKLLIIMETELWPNLINELKRRGIPLVLVNA-------------RLSDR------- 159 (419)
T ss_pred -HHHHHHHHhc------------CCCEEEEEeccccHHHHHHHHHcCCCEEEEee-------------eechh-------
Confidence 0133344455 788877655555544 78889999998532 11111
Q ss_pred CCCCCccCCCCCCCCCCCCCcccCCCCCcHHHHHHHHhh-hccCceEEecchHHhhHHHhhcCccccCCC-Cceeecccc
Q 012563 169 PQSESPVIEYPPLRVKDIPKLETRYPEYNYPLVSAMVNN-IKASSGMIWNTFEELEQAALSTLPEEYSGI-PVFPIGPFH 246 (460)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~s~~~le~~~~~~~~~~~~~~-pv~~vGpl~ 246 (460)
.-..+..+....+. +++-+.++.++-.+-+.- .. ++. +|..+|-+-
T Consensus 160 -------------------------S~~~y~k~~~~~~~~~~~i~li~aQse~D~~Rf-----~~--LGa~~v~v~GNlK 207 (419)
T COG1519 160 -------------------------SFARYAKLKFLARLLFKNIDLILAQSEEDAQRF-----RS--LGAKPVVVTGNLK 207 (419)
T ss_pred -------------------------hhHHHHHHHHHHHHHHHhcceeeecCHHHHHHH-----Hh--cCCcceEEeccee
Confidence 11123334444443 366677788776554321 22 333 488888665
Q ss_pred cCCCCCCCCcccccc-chhhhhccCCC-CeEEEEEecccccCCHHHHHHHHHHHHhCC--CCEEEEECCCCCCCchhhcc
Q 012563 247 KYFPASSSSLLSQDQ-SSISWLDKQAP-KSVIYVSFGSVAAINETEFLEIAWGLANSR--VPFLWVVRPGLVDGVEWLEA 322 (460)
Q Consensus 247 ~~~~~~~~~~~~~~~-~l~~~l~~~~~-~~~v~vs~GS~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~~~~~~ 322 (460)
..... .+... ....|-..-+. ++ +.|..+|.. -..+.......++.+.. ...||+ .-.. +.
T Consensus 208 fd~~~-----~~~~~~~~~~~r~~l~~~r~-v~iaaSTH~-GEeei~l~~~~~l~~~~~~~llIlV-PRHp-------ER 272 (419)
T COG1519 208 FDIEP-----PPQLAAELAALRRQLGGHRP-VWVAASTHE-GEEEIILDAHQALKKQFPNLLLILV-PRHP-------ER 272 (419)
T ss_pred ecCCC-----ChhhHHHHHHHHHhcCCCCc-eEEEecCCC-chHHHHHHHHHHHHhhCCCceEEEe-cCCh-------hh
Confidence 54322 11111 12222222222 33 444555533 24444555555565432 233443 3221 11
Q ss_pred CchhHHhhhC------------------CCceEEeccch-HHHhccCCC----cceeeccCchhhHHHHhhCCCeeecCc
Q 012563 323 LPKGYLEMVD------------------GRGYIVQWAPQ-QQVLAHPAV----GGFLTHSGWNSTLESICEGVPMICQPC 379 (460)
Q Consensus 323 ~~~~~~~~~~------------------~~~~~~~~vp~-~~lL~~~~~----~~~I~HGG~~s~~eal~~GvP~v~~P~ 379 (460)
. +.+.+... .++.+.+-.-- ..++.-+++ +-++.+||.| .+|++++|+|+|.=|+
T Consensus 273 f-~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~ 350 (419)
T COG1519 273 F-KAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFGPY 350 (419)
T ss_pred H-HHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEeCCc
Confidence 1 11111111 12333333321 223333332 1145699987 6899999999999999
Q ss_pred ccchhhHHHHHHHhhceeEeeCCccCHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 012563 380 LADQMVNARYVSHVWRVGLHLEGKLEKKEIETAIRRLMVEAE-GQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHIL 458 (460)
Q Consensus 380 ~~DQ~~na~~v~~~lG~G~~~~~~~~~~~l~~~i~~ll~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
...|..-++++.++ |.|+.++ +++.|.+++..+++|++ .+.|.+++.++-+..+ .++++.++.++
T Consensus 351 ~~Nf~ei~~~l~~~-ga~~~v~---~~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~~~----------gal~r~l~~l~ 416 (419)
T COG1519 351 TFNFSDIAERLLQA-GAGLQVE---DADLLAKAVELLLADEDKREAYGRAGLEFLAQNR----------GALARTLEALK 416 (419)
T ss_pred cccHHHHHHHHHhc-CCeEEEC---CHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh----------HHHHHHHHHhh
Confidence 99999999999996 9999997 38889999998888732 2344444444443333 25555555554
Q ss_pred c
Q 012563 459 S 459 (460)
Q Consensus 459 ~ 459 (460)
+
T Consensus 417 ~ 417 (419)
T COG1519 417 P 417 (419)
T ss_pred h
Confidence 3
No 96
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.51 E-value=0.00011 Score=74.67 Aligned_cols=167 Identities=14% Similarity=0.128 Sum_probs=92.2
Q ss_pred eEEEEEecccccCCHHHHHHHHHHHH---hCCCCEEEEECCCCCCCchhhccCchhHHhhhCCCceEEeccchH---HHh
Q 012563 274 SVIYVSFGSVAAINETEFLEIAWGLA---NSRVPFLWVVRPGLVDGVEWLEALPKGYLEMVDGRGYIVQWAPQQ---QVL 347 (460)
Q Consensus 274 ~~v~vs~GS~~~~~~~~~~~~~~al~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~---~lL 347 (460)
..+++..|.... .+-+..+++++. +.+.+++++ |... .. ....-..+.++.+.++.+....+.. .++
T Consensus 291 ~~~i~~vGrl~~--~Kg~~~li~a~~~l~~~~~~lvi~-G~g~-~~---~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~ 363 (473)
T TIGR02095 291 VPLFGVISRLTQ--QKGVDLLLAALPELLELGGQLVVL-GTGD-PE---LEEALRELAERYPGNVRVIIGYDEALAHLIY 363 (473)
T ss_pred CCEEEEEecCcc--ccChHHHHHHHHHHHHcCcEEEEE-CCCC-HH---HHHHHHHHHHHCCCcEEEEEcCCHHHHHHHH
Confidence 345556677664 223334444443 334555544 3321 00 1111122223345566666555543 478
Q ss_pred ccCCCcceeecc---Cch-hhHHHHhhCCCeeecCccc--chhhHHHHHHHhhceeEeeCCccCHHHHHHHHHHHhc---
Q 012563 348 AHPAVGGFLTHS---GWN-STLESICEGVPMICQPCLA--DQMVNARYVSHVWRVGLHLEGKLEKKEIETAIRRLMV--- 418 (460)
Q Consensus 348 ~~~~~~~~I~HG---G~~-s~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~lG~G~~~~~~~~~~~l~~~i~~ll~--- 418 (460)
..+++ +|.-. |.| +.+||+++|+|.|+-...+ |.-.+...-... +.|..++. -++++|.++|.+++.
T Consensus 364 ~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~-~~G~l~~~-~d~~~la~~i~~~l~~~~ 439 (473)
T TIGR02095 364 AGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAES-GTGFLFEE-YDPGALLAALSRALRLYR 439 (473)
T ss_pred HhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCC-CceEEeCC-CCHHHHHHHHHHHHHHHh
Confidence 88888 77532 444 7889999999999865532 221111000121 67877764 688999999999987
Q ss_pred -cchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC
Q 012563 419 -EAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHILSF 460 (460)
Q Consensus 419 -~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 460 (460)
+ .+. .+++++ +++.+.-|-++.+++.++..+++
T Consensus 440 ~~---~~~---~~~~~~---~~~~~~fsw~~~a~~~~~~Y~~l 473 (473)
T TIGR02095 440 QD---PSL---WEALQK---NAMSQDFSWDKSAKQYVELYRSL 473 (473)
T ss_pred cC---HHH---HHHHHH---HHhccCCCcHHHHHHHHHHHHhC
Confidence 4 222 222222 22335677788888888777653
No 97
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.49 E-value=0.00012 Score=71.15 Aligned_cols=80 Identities=15% Similarity=0.103 Sum_probs=56.8
Q ss_pred CCCceEEeccch-HHHhccCCCcceeec----cCchhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCccCH
Q 012563 332 DGRGYIVQWAPQ-QQVLAHPAVGGFLTH----SGWNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEK 406 (460)
Q Consensus 332 ~~~~~~~~~vp~-~~lL~~~~~~~~I~H----GG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~ 406 (460)
.+++.+..+..+ .+++..+++ +|+- |-.+++.||+++|+|+|+-... .....+.+ +.|..... -++
T Consensus 248 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~----~~~~~i~~--~~~~~~~~-~~~ 318 (358)
T cd03812 248 EDKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTI----TKEVDLTD--LVKFLSLD-ESP 318 (358)
T ss_pred CCcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCC----chhhhhcc--CccEEeCC-CCH
Confidence 356677776544 568889988 6654 3457999999999999985443 33444555 44444432 467
Q ss_pred HHHHHHHHHHhccc
Q 012563 407 KEIETAIRRLMVEA 420 (460)
Q Consensus 407 ~~l~~~i~~ll~~~ 420 (460)
++++++|.++++|.
T Consensus 319 ~~~a~~i~~l~~~~ 332 (358)
T cd03812 319 EIWAEEILKLKSED 332 (358)
T ss_pred HHHHHHHHHHHhCc
Confidence 99999999999983
No 98
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.47 E-value=7e-05 Score=70.85 Aligned_cols=202 Identities=15% Similarity=0.196 Sum_probs=116.0
Q ss_pred CCCCceeec-ccccCCCCCCCCccccccchhhhhccCCCCeEEEEEecccccCCHHHHHHHHHHHHh-----CCCCEEEE
Q 012563 235 SGIPVFPIG-PFHKYFPASSSSLLSQDQSSISWLDKQAPKSVIYVSFGSVAAINETEFLEIAWGLAN-----SRVPFLWV 308 (460)
Q Consensus 235 ~~~pv~~vG-pl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~-----~~~~~i~~ 308 (460)
++.|.+||| |+....+. .+...+..+-+....+++++.+-.||-..-=...+..+.++... .+.++++-
T Consensus 154 ~g~~~~yVGHpl~d~i~~-----~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp 228 (381)
T COG0763 154 FGLPCTYVGHPLADEIPL-----LPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLP 228 (381)
T ss_pred cCCCeEEeCChhhhhccc-----cccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEe
Confidence 557799999 88765432 22333344445445678999999999876111222223333332 24567666
Q ss_pred ECCCCCCCchhhccCchhHHhhhCCCc-eEEecc-ch--HHHhccCCCcceeeccCchhhHHHHhhCCCeeecCc-ccch
Q 012563 309 VRPGLVDGVEWLEALPKGYLEMVDGRG-YIVQWA-PQ--QQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPC-LADQ 383 (460)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v-p~--~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~-~~DQ 383 (460)
+.+... +..-... ...+. ...-++ ++ .+++..|++ .+.-+| .-++|+..+|+|||+.=- ..=-
T Consensus 229 ~~~~~~------~~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~aD~--al~aSG-T~tLE~aL~g~P~Vv~Yk~~~it 296 (381)
T COG0763 229 LVNAKY------RRIIEEA---LKWEVAGLSLILIDGEKRKAFAAADA--ALAASG-TATLEAALAGTPMVVAYKVKPIT 296 (381)
T ss_pred cCcHHH------HHHHHHH---hhccccCceEEecCchHHHHHHHhhH--HHHhcc-HHHHHHHHhCCCEEEEEeccHHH
Confidence 554331 1111111 11111 122222 22 337778887 777777 567899999999998311 1111
Q ss_pred hhHHHHHHHhhce--------eEee-C---C-ccCHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 012563 384 MVNARYVSHVWRV--------GLHL-E---G-KLEKKEIETAIRRLMVEAE-GQEMRERITCLKKNVDACLRQGGSSHQA 449 (460)
Q Consensus 384 ~~na~~v~~~lG~--------G~~~-~---~-~~~~~~l~~~i~~ll~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~ 449 (460)
.+-|++... +.. |..+ + . ..+++.|.+++..++.|++ ...+++....+++.++ .+++++.+
T Consensus 297 ~~iak~lvk-~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~----~~~~~e~a 371 (381)
T COG0763 297 YFIAKRLVK-LPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGDRREALKEKFRELHQYLR----EDPASEIA 371 (381)
T ss_pred HHHHHHhcc-CCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHc----CCcHHHHH
Confidence 223444433 121 1111 1 1 5789999999999999842 3456666666666666 67788999
Q ss_pred HHHHHHHHh
Q 012563 450 LGRLVDHIL 458 (460)
Q Consensus 450 ~~~~~~~~~ 458 (460)
.+.+++.+.
T Consensus 372 A~~vl~~~~ 380 (381)
T COG0763 372 AQAVLELLL 380 (381)
T ss_pred HHHHHHHhc
Confidence 888888764
No 99
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.47 E-value=0.00027 Score=74.06 Aligned_cols=113 Identities=17% Similarity=0.163 Sum_probs=76.0
Q ss_pred CCCceEEeccch-HHHhccCCCcceee---ccCc-hhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCC-ccC
Q 012563 332 DGRGYIVQWAPQ-QQVLAHPAVGGFLT---HSGW-NSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEG-KLE 405 (460)
Q Consensus 332 ~~~~~~~~~vp~-~~lL~~~~~~~~I~---HGG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~-~~~ 405 (460)
.+++.+..|.+. ..++..+++ ||. +.|. +++.||+++|+|+|+... ......|.+. .-|..++. +.+
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~----gG~~EiV~dg-~~GlLv~~~d~~ 645 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLA----GGAGEAVQEG-VTGLTLPADTVT 645 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECC----CChHHHccCC-CCEEEeCCCCCC
Confidence 367788888876 558899988 765 4554 799999999999999654 3355667673 57888875 566
Q ss_pred HHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 012563 406 KKEIETAIRRLMVEAE-GQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHIL 458 (460)
Q Consensus 406 ~~~l~~~i~~ll~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
++++.+++.+++.+.. ...+++++++..+ +.-+.++.+++.++..+
T Consensus 646 ~~~La~aL~~ll~~l~~~~~l~~~ar~~a~-------~~FS~~~~~~~~~~lY~ 692 (694)
T PRK15179 646 APDVAEALARIHDMCAADPGIARKAADWAS-------ARFSLNQMIASTVRCYQ 692 (694)
T ss_pred hHHHHHHHHHHHhChhccHHHHHHHHHHHH-------HhCCHHHHHHHHHHHhC
Confidence 6777777766664310 1556655544432 34467777777766654
No 100
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.46 E-value=0.0001 Score=71.64 Aligned_cols=79 Identities=16% Similarity=0.259 Sum_probs=55.0
Q ss_pred hCCCceEEeccchH---HHhccCCCcceeec----cCchhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCc
Q 012563 331 VDGRGYIVQWAPQQ---QVLAHPAVGGFLTH----SGWNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGK 403 (460)
Q Consensus 331 ~~~~~~~~~~vp~~---~lL~~~~~~~~I~H----GG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~ 403 (460)
..+++.+..++|+. .++..+++ +|.- |..+++.||+++|+|+|+.... .....+.+ .|..+..
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~~~---~~~~~~~- 320 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNIS----SLPEVAGD---AALYFDP- 320 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCC----CccceecC---ceeeeCC-
Confidence 34677888999875 47888887 5533 3346899999999999985442 22222333 2333442
Q ss_pred cCHHHHHHHHHHHhcc
Q 012563 404 LEKKEIETAIRRLMVE 419 (460)
Q Consensus 404 ~~~~~l~~~i~~ll~~ 419 (460)
-+.+++.++|.++++|
T Consensus 321 ~~~~~~~~~i~~l~~~ 336 (365)
T cd03809 321 LDPEALAAAIERLLED 336 (365)
T ss_pred CCHHHHHHHHHHHhcC
Confidence 4889999999999988
No 101
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.43 E-value=0.00012 Score=74.03 Aligned_cols=169 Identities=11% Similarity=0.127 Sum_probs=89.4
Q ss_pred eEEEEEecccccCCHHHHHHHHHHHHh---CCCCEEEEECCCCCCCchhhccCchhHHhhhCCCceE-Eeccch--HHHh
Q 012563 274 SVIYVSFGSVAAINETEFLEIAWGLAN---SRVPFLWVVRPGLVDGVEWLEALPKGYLEMVDGRGYI-VQWAPQ--QQVL 347 (460)
Q Consensus 274 ~~v~vs~GS~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vp~--~~lL 347 (460)
..+++..|.... .+-+..+++++.. .+.+++++-++.. . ....-....++.+.++.+ ..|-.. ..++
T Consensus 282 ~~~i~~vGRl~~--~KG~~~li~a~~~l~~~~~~lvivG~g~~-~----~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~ 354 (466)
T PRK00654 282 APLFAMVSRLTE--QKGLDLVLEALPELLEQGGQLVLLGTGDP-E----LEEAFRALAARYPGKVGVQIGYDEALAHRIY 354 (466)
T ss_pred CcEEEEeecccc--ccChHHHHHHHHHHHhcCCEEEEEecCcH-H----HHHHHHHHHHHCCCcEEEEEeCCHHHHHHHH
Confidence 445556777664 2334444455443 3556655533221 0 000111222333455554 355332 2478
Q ss_pred ccCCCcceeec---cCch-hhHHHHhhCCCeeecCccc--chhhHHHHHHHhhceeEeeCCccCHHHHHHHHHHHhccch
Q 012563 348 AHPAVGGFLTH---SGWN-STLESICEGVPMICQPCLA--DQMVNARYVSHVWRVGLHLEGKLEKKEIETAIRRLMVEAE 421 (460)
Q Consensus 348 ~~~~~~~~I~H---GG~~-s~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~lG~G~~~~~~~~~~~l~~~i~~ll~~~~ 421 (460)
+.+++ +|.- -|.| +.+||+++|+|.|+....+ |.-.+...-.+. +-|..++. -++++|.++|.++++..+
T Consensus 355 ~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~-~~G~lv~~-~d~~~la~~i~~~l~~~~ 430 (466)
T PRK00654 355 AGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGE-ATGFVFDD-FNAEDLLRALRRALELYR 430 (466)
T ss_pred hhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCC-CceEEeCC-CCHHHHHHHHHHHHHHhc
Confidence 88888 7753 3444 8899999999999865432 321111000222 67887774 688999999999886310
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 012563 422 GQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHILS 459 (460)
Q Consensus 422 ~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
... ..++++ +++..+.-+-++.+++.++..++
T Consensus 431 ~~~---~~~~~~---~~~~~~~fsw~~~a~~~~~lY~~ 462 (466)
T PRK00654 431 QPP---LWRALQ---RQAMAQDFSWDKSAEEYLELYRR 462 (466)
T ss_pred CHH---HHHHHH---HHHhccCCChHHHHHHHHHHHHH
Confidence 011 122222 22223556677777777666543
No 102
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.42 E-value=0.00015 Score=72.28 Aligned_cols=80 Identities=15% Similarity=0.125 Sum_probs=55.7
Q ss_pred CCCceEEeccchHH---HhccCCCcceeecc---C-chhhHHHHhhCCCeeecCcccchhhHHHHHH---HhhceeEeeC
Q 012563 332 DGRGYIVQWAPQQQ---VLAHPAVGGFLTHS---G-WNSTLESICEGVPMICQPCLADQMVNARYVS---HVWRVGLHLE 401 (460)
Q Consensus 332 ~~~~~~~~~vp~~~---lL~~~~~~~~I~HG---G-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~---~~lG~G~~~~ 401 (460)
.+++.+..++|+.+ +|..+++ +|+-. | ..++.||+++|+|+|+.-..+. ....++ +. ..|...+
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp---~~~iv~~~~~g-~~G~l~~ 377 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGP---LLDIVVPWDGG-PTGFLAS 377 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCC---chheeeccCCC-CceEEeC
Confidence 46788889988754 7888888 66421 2 2488999999999998554321 112233 32 5666542
Q ss_pred CccCHHHHHHHHHHHhccc
Q 012563 402 GKLEKKEIETAIRRLMVEA 420 (460)
Q Consensus 402 ~~~~~~~l~~~i~~ll~~~ 420 (460)
++++++++|.++++++
T Consensus 378 ---d~~~la~ai~~ll~~~ 393 (419)
T cd03806 378 ---TAEEYAEAIEKILSLS 393 (419)
T ss_pred ---CHHHHHHHHHHHHhCC
Confidence 8999999999999863
No 103
>PLN02316 synthase/transferase
Probab=98.38 E-value=0.0011 Score=71.73 Aligned_cols=118 Identities=12% Similarity=0.098 Sum_probs=75.5
Q ss_pred CCCceEEeccchH---HHhccCCCcceeecc---C-chhhHHHHhhCCCeeecCccc--chhhH-------HHHHHHhhc
Q 012563 332 DGRGYIVQWAPQQ---QVLAHPAVGGFLTHS---G-WNSTLESICEGVPMICQPCLA--DQMVN-------ARYVSHVWR 395 (460)
Q Consensus 332 ~~~~~~~~~vp~~---~lL~~~~~~~~I~HG---G-~~s~~eal~~GvP~v~~P~~~--DQ~~n-------a~~v~~~lG 395 (460)
++++.+....+.. .++..+++ |+.-. | -.+.+||+++|+|.|+-...+ |.-.. ++..... +
T Consensus 899 ~~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~-~ 975 (1036)
T PLN02316 899 HDRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLE-P 975 (1036)
T ss_pred CCeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccC-C
Confidence 4556665444543 57888888 88543 3 358999999999888865532 32211 1101111 4
Q ss_pred eeEeeCCccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 012563 396 VGLHLEGKLEKKEIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHIL 458 (460)
Q Consensus 396 ~G~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
-|..++. -+++.|..+|.+++.+ |.+..+.+++..++++...-|-.+.+++.++..+
T Consensus 976 tGflf~~-~d~~aLa~AL~raL~~-----~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~ 1032 (1036)
T PLN02316 976 NGFSFDG-ADAAGVDYALNRAISA-----WYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYH 1032 (1036)
T ss_pred ceEEeCC-CCHHHHHHHHHHHHhh-----hhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 5777764 7899999999999975 3444455666666666667777777776666554
No 104
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.38 E-value=1.8e-06 Score=69.48 Aligned_cols=118 Identities=15% Similarity=0.127 Sum_probs=79.4
Q ss_pred CeEEEEEecccccC---CHHHHHHHHHHHHhCCC-CEEEEECCCCCCCchhhccCchhHHh-hhCCCceE--Eeccch-H
Q 012563 273 KSVIYVSFGSVAAI---NETEFLEIAWGLANSRV-PFLWVVRPGLVDGVEWLEALPKGYLE-MVDGRGYI--VQWAPQ-Q 344 (460)
Q Consensus 273 ~~~v~vs~GS~~~~---~~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~vp~-~ 344 (460)
...+|||-||.... +.-.-.+..+.+.+.|. +.++..+.+..- .++.... +..+...+ .+|-|- .
T Consensus 3 ~~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~-------~~d~~~~~~k~~gl~id~y~f~psl~ 75 (170)
T KOG3349|consen 3 LMTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPF-------FGDPIDLIRKNGGLTIDGYDFSPSLT 75 (170)
T ss_pred ceEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccC-------CCCHHHhhcccCCeEEEEEecCccHH
Confidence 35799999998751 11112335566666775 567777776321 2222221 11122233 477886 6
Q ss_pred HHhccCCCcceeeccCchhhHHHHhhCCCeeecCcc----cchhhHHHHHHHhhceeEee
Q 012563 345 QVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCL----ADQMVNARYVSHVWRVGLHL 400 (460)
Q Consensus 345 ~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~----~DQ~~na~~v~~~lG~G~~~ 400 (460)
+..+.+++ +|+|+|+||++|.|..|+|.|+++-. -+|-.-|..+++. |.=..=
T Consensus 76 e~I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~e-gyL~~C 132 (170)
T KOG3349|consen 76 EDIRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEE-GYLYYC 132 (170)
T ss_pred HHHhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhc-CcEEEe
Confidence 67777888 99999999999999999999999973 5899999999994 765443
No 105
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.31 E-value=7.6e-05 Score=72.60 Aligned_cols=124 Identities=12% Similarity=0.113 Sum_probs=86.0
Q ss_pred EEEecccccCCHHHHHHHHHHHHhCCCCEEEEECCCCCCCchhhccCchhHHhhhCCCceEEeccchH---HHhccCCCc
Q 012563 277 YVSFGSVAAINETEFLEIAWGLANSRVPFLWVVRPGLVDGVEWLEALPKGYLEMVDGRGYIVQWAPQQ---QVLAHPAVG 353 (460)
Q Consensus 277 ~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~---~lL~~~~~~ 353 (460)
++..|+... .+.+..+++++...+.+++++-.+.. .+.+.+...+|+.+..++|+. .++..+++
T Consensus 198 il~~G~~~~--~K~~~~li~a~~~~~~~l~ivG~g~~----------~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~- 264 (351)
T cd03804 198 YLSVGRLVP--YKRIDLAIEAFNKLGKRLVVIGDGPE----------LDRLRAKAGPNVTFLGRVSDEELRDLYARARA- 264 (351)
T ss_pred EEEEEcCcc--ccChHHHHHHHHHCCCcEEEEECChh----------HHHHHhhcCCCEEEecCCCHHHHHHHHHhCCE-
Confidence 445676653 34466777888877777665544321 133333456888999999984 47888888
Q ss_pred ceee--ccCc-hhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCccCHHHHHHHHHHHhccc
Q 012563 354 GFLT--HSGW-NSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEKKEIETAIRRLMVEA 420 (460)
Q Consensus 354 ~~I~--HGG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~l~~~i~~ll~~~ 420 (460)
+|. .-|. .++.||+++|+|+|+....+ ....+++. +.|..++. -+.+++.++|.++++|.
T Consensus 265 -~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~-~~G~~~~~-~~~~~la~~i~~l~~~~ 327 (351)
T cd03804 265 -FLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVIDG-VTGILFEE-QTVESLAAAVERFEKNE 327 (351)
T ss_pred -EEECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeCC-CCEEEeCC-CCHHHHHHHHHHHHhCc
Confidence 663 4444 46789999999999965433 44556663 67888864 58899999999999883
No 106
>PLN02949 transferase, transferring glycosyl groups
Probab=98.30 E-value=0.0005 Score=69.15 Aligned_cols=112 Identities=15% Similarity=0.088 Sum_probs=68.8
Q ss_pred CCCceEEeccchHH---HhccCCCcceee---ccCch-hhHHHHhhCCCeeecCcccchhhHHHHHHH-hhc-eeEeeCC
Q 012563 332 DGRGYIVQWAPQQQ---VLAHPAVGGFLT---HSGWN-STLESICEGVPMICQPCLADQMVNARYVSH-VWR-VGLHLEG 402 (460)
Q Consensus 332 ~~~~~~~~~vp~~~---lL~~~~~~~~I~---HGG~~-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~-~lG-~G~~~~~ 402 (460)
.+++.+..++|+.+ +|..+++ +|+ +-|.| ++.||+++|+|+|+....+-- ...+.+ .-| .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~---~eIV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPK---MDIVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCc---ceeeecCCCCcccccC--
Confidence 46778889998654 7888887 773 23443 799999999999997654310 011111 001 23322
Q ss_pred ccCHHHHHHHHHHHhccc-h-HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 012563 403 KLEKKEIETAIRRLMVEA-E-GQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHILS 459 (460)
Q Consensus 403 ~~~~~~l~~~i~~ll~~~-~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
-+.++++++|.++++++ + ..++.+++++-.++ -|.++..+++.+.+++
T Consensus 407 -~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~--------FS~e~~~~~~~~~i~~ 456 (463)
T PLN02949 407 -TTVEEYADAILEVLRMRETERLEIAAAARKRANR--------FSEQRFNEDFKDAIRP 456 (463)
T ss_pred -CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH--------cCHHHHHHHHHHHHHH
Confidence 28899999999999842 1 23444454443322 4566666666665543
No 107
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.21 E-value=0.0015 Score=66.43 Aligned_cols=169 Identities=14% Similarity=0.102 Sum_probs=88.6
Q ss_pred CeEEEEEecccccCCHHHHHHHHHHHH---hCCCCEEEEECCCCCCCchhhccCchhHHhhhCCCceEEeccchH---HH
Q 012563 273 KSVIYVSFGSVAAINETEFLEIAWGLA---NSRVPFLWVVRPGLVDGVEWLEALPKGYLEMVDGRGYIVQWAPQQ---QV 346 (460)
Q Consensus 273 ~~~v~vs~GS~~~~~~~~~~~~~~al~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~---~l 346 (460)
+..+++..|.... .+.+..+++++. +.+.+++++-.+.. . ....-....++..+++.+....++. .+
T Consensus 295 ~~~~i~~vGrl~~--~Kg~~~li~a~~~l~~~~~~lvi~G~g~~--~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 367 (476)
T cd03791 295 DAPLFGFVGRLTE--QKGIDLLLEALPELLELGGQLVILGSGDP--E---YEEALRELAARYPGRVAVLIGYDEALAHLI 367 (476)
T ss_pred CCCEEEEEeeccc--cccHHHHHHHHHHHHHcCcEEEEEecCCH--H---HHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Confidence 3445556777664 233444444443 33445554433321 0 1111112222234666655333332 47
Q ss_pred hccCCCcceeecc---Cc-hhhHHHHhhCCCeeecCccc--chhhHHHHHHHhhceeEeeCCccCHHHHHHHHHHHhccc
Q 012563 347 LAHPAVGGFLTHS---GW-NSTLESICEGVPMICQPCLA--DQMVNARYVSHVWRVGLHLEGKLEKKEIETAIRRLMVEA 420 (460)
Q Consensus 347 L~~~~~~~~I~HG---G~-~s~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~lG~G~~~~~~~~~~~l~~~i~~ll~~~ 420 (460)
+..+++ ++.-. |. .+.+||+++|+|+|+....+ |.-.+...-.+. |.|..++. -+.+++.++|.++++..
T Consensus 368 ~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~-~~G~~~~~-~~~~~l~~~i~~~l~~~ 443 (476)
T cd03791 368 YAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGE-GTGFVFEG-YNADALLAALRRALALY 443 (476)
T ss_pred HHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCC-CCeEEeCC-CCHHHHHHHHHHHHHHH
Confidence 788888 77532 23 47899999999999865532 221111111132 57888874 67999999999998641
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 012563 421 EGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHIL 458 (460)
Q Consensus 421 ~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
+ -++...+++++ +....-+-++.+++.++..+
T Consensus 444 ~---~~~~~~~~~~~---~~~~~fsw~~~a~~~~~~y~ 475 (476)
T cd03791 444 R---DPEAWRKLQRN---AMAQDFSWDRSAKEYLELYR 475 (476)
T ss_pred c---CHHHHHHHHHH---HhccCCChHHHHHHHHHHHh
Confidence 1 12222223222 23344566677777766654
No 108
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.11 E-value=0.0082 Score=58.96 Aligned_cols=109 Identities=14% Similarity=0.092 Sum_probs=66.7
Q ss_pred CCCceEEeccchHH---HhccCCCccee------eccCc-hhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeC
Q 012563 332 DGRGYIVQWAPQQQ---VLAHPAVGGFL------THSGW-NSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLE 401 (460)
Q Consensus 332 ~~~~~~~~~vp~~~---lL~~~~~~~~I------~HGG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~ 401 (460)
.+|+.+..++|+.+ .+.++++.++- +.++. +.+.|++++|+|+|+.++ ...++.. +.+....
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~~-~~~~~~~ 324 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRYE-DEVVLIA 324 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhhc-CcEEEeC
Confidence 36778999998655 68888883332 22333 468999999999998653 2333442 4333333
Q ss_pred CccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 012563 402 GKLEKKEIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHILS 459 (460)
Q Consensus 402 ~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
-+.+++.++|.+++.+++....+. +++ .. +.-+-++..+++.+.+++
T Consensus 325 --~d~~~~~~ai~~~l~~~~~~~~~~-~~~----~~----~~~sW~~~a~~~~~~l~~ 371 (373)
T cd04950 325 --DDPEEFVAAIEKALLEDGPARERR-RLR----LA----AQNSWDARAAEMLEALQE 371 (373)
T ss_pred --CCHHHHHHHHHHHHhcCCchHHHH-HHH----HH----HHCCHHHHHHHHHHHHHh
Confidence 389999999999876532112221 111 11 345667777777766653
No 109
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.06 E-value=0.00021 Score=69.13 Aligned_cols=141 Identities=15% Similarity=0.197 Sum_probs=81.5
Q ss_pred CCCeEEEEEecccccCC-H---HHHHHHHHHHHhC-CCCEEEEECCCCCCCchhhccCchhHHhhhCCCceEEeccc---
Q 012563 271 APKSVIYVSFGSVAAIN-E---TEFLEIAWGLANS-RVPFLWVVRPGLVDGVEWLEALPKGYLEMVDGRGYIVQWAP--- 342 (460)
Q Consensus 271 ~~~~~v~vs~GS~~~~~-~---~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp--- 342 (460)
.+++.+++++=...... + +.+..+++++.+. +.++||.+.++.... ..+ .....+. +|+++.+-++
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~~----~~i-~~~l~~~-~~v~~~~~l~~~~ 251 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPRGS----DII-IEKLKKY-DNVRLIEPLGYEE 251 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HHHH----HHH-HHHHTT--TTEEEE----HHH
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCchHH----HHH-HHHhccc-CCEEEECCCCHHH
Confidence 57899999995555544 3 4455566666655 677888887543111 111 2222233 4778875554
Q ss_pred hHHHhccCCCcceeeccCchhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCccCHHHHHHHHHHHhccchH
Q 012563 343 QQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEKKEIETAIRRLMVEAEG 422 (460)
Q Consensus 343 ~~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~l~~~i~~ll~~~~~ 422 (460)
...+|+++++ +|+..| |-.-||.+.|+|+|.+=..++.+. -+.. |..+.+. .+.++|.+++.+++++
T Consensus 252 ~l~ll~~a~~--vvgdSs-GI~eEa~~lg~P~v~iR~~geRqe---~r~~--~~nvlv~--~~~~~I~~ai~~~l~~--- 318 (346)
T PF02350_consen 252 YLSLLKNADL--VVGDSS-GIQEEAPSLGKPVVNIRDSGERQE---GRER--GSNVLVG--TDPEAIIQAIEKALSD--- 318 (346)
T ss_dssp HHHHHHHESE--EEESSH-HHHHHGGGGT--EEECSSS-S-HH---HHHT--TSEEEET--SSHHHHHHHHHHHHH----
T ss_pred HHHHHhcceE--EEEcCc-cHHHHHHHhCCeEEEecCCCCCHH---HHhh--cceEEeC--CCHHHHHHHHHHHHhC---
Confidence 4668899999 999999 444499999999999833333222 2222 5555543 6999999999999987
Q ss_pred HHHHHHHH
Q 012563 423 QEMRERIT 430 (460)
Q Consensus 423 ~~~~~~a~ 430 (460)
....++..
T Consensus 319 ~~~~~~~~ 326 (346)
T PF02350_consen 319 KDFYRKLK 326 (346)
T ss_dssp HHHHHHHH
T ss_pred hHHHHhhc
Confidence 44554443
No 110
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=98.04 E-value=0.001 Score=67.59 Aligned_cols=114 Identities=10% Similarity=0.081 Sum_probs=77.2
Q ss_pred CCCceEEeccchHHHhccCCCcceee---ccC-chhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCC---cc
Q 012563 332 DGRGYIVQWAPQQQVLAHPAVGGFLT---HSG-WNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEG---KL 404 (460)
Q Consensus 332 ~~~~~~~~~vp~~~lL~~~~~~~~I~---HGG-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~---~~ 404 (460)
.+++.+..+.+...++..+++ +|. .-| ..++.||+++|+|+|+.-.. ..+...+++. .-|..++. .-
T Consensus 375 ~~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~---~G~~eiI~~g-~nG~lv~~~~~~~ 448 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVN---YGNPTFIEDN-KNGYLIPIDEEED 448 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCC---CCCHHHccCC-CCEEEEeCCcccc
Confidence 356677788888889999988 775 234 36999999999999995432 1244556663 56766652 12
Q ss_pred C----HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 012563 405 E----KKEIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHILS 459 (460)
Q Consensus 405 ~----~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
+ .++|+++|.++++++....+.+++++.++. -+.+..+++..+.+++
T Consensus 449 d~~~~~~~la~~I~~ll~~~~~~~~~~~a~~~a~~--------fs~~~v~~~w~~ll~~ 499 (500)
T TIGR02918 449 DEDQIITALAEKIVEYFNSNDIDAFHEYSYQIAEG--------FLTANIIEKWKKLVRE 499 (500)
T ss_pred chhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHh--------cCHHHHHHHHHHHHhh
Confidence 2 788999999999653234556666655544 3467777776666654
No 111
>PRK10125 putative glycosyl transferase; Provisional
Probab=98.03 E-value=0.0097 Score=59.04 Aligned_cols=152 Identities=11% Similarity=0.023 Sum_probs=83.0
Q ss_pred EEecccccCCHHHHHHHHHHHHhCCCCE-EEEECCCCCCCchhhccCchhHHhhhCCCceEEeccc-h---HHHhccCCC
Q 012563 278 VSFGSVAAINETEFLEIAWGLANSRVPF-LWVVRPGLVDGVEWLEALPKGYLEMVDGRGYIVQWAP-Q---QQVLAHPAV 352 (460)
Q Consensus 278 vs~GS~~~~~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp-~---~~lL~~~~~ 352 (460)
+..|.....+.+.+..+++|+...+.++ ++.+|.... ..+ .++....+.. + ..+++.+++
T Consensus 245 l~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g~~-------~~~--------~~v~~~g~~~~~~~l~~~y~~aDv 309 (405)
T PRK10125 245 AVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKFSP-------FTA--------GNVVNHGFETDKRKLMSALNQMDA 309 (405)
T ss_pred EEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCCCc-------ccc--------cceEEecCcCCHHHHHHHHHhCCE
Confidence 3445422223344566888887765443 444554320 011 1224444442 2 446677887
Q ss_pred cceeecc----CchhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCccCHHHHHHHHHHHhccchHHHHHHH
Q 012563 353 GGFLTHS----GWNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEKKEIETAIRRLMVEAEGQEMRER 428 (460)
Q Consensus 353 ~~~I~HG----G~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~ 428 (460)
||.-. --.++.||+++|+|+|+....+ ..+.+.+ +-|..++. -+.++|+++++..+.+ ..+++.
T Consensus 310 --fV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~Eiv~~--~~G~lv~~-~d~~~La~~~~~~~~~---~~~~~~ 377 (405)
T PRK10125 310 --LVFSSRVDNYPLILCEALSIGVPVIATHSDA----AREVLQK--SGGKTVSE-EEVLQLAQLSKPEIAQ---AVFGTT 377 (405)
T ss_pred --EEECCccccCcCHHHHHHHcCCCEEEeCCCC----hHHhEeC--CcEEEECC-CCHHHHHhccCHHHHH---HhhhhH
Confidence 88643 2468999999999999976654 2333333 56888874 5788888754322222 111111
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC
Q 012563 429 ITCLKKNVDACLRQGGSSHQALGRLVDHILSF 460 (460)
Q Consensus 429 a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 460 (460)
... .++.+.+.-+....+++.++..+++
T Consensus 378 ~~~----~r~~~~~~fs~~~~~~~y~~lY~~l 405 (405)
T PRK10125 378 LAE----FSQRSRAAYSGQQMLEEYVNFYQNL 405 (405)
T ss_pred HHH----HHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 111 2222224567788888887776653
No 112
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=98.01 E-value=0.00026 Score=69.71 Aligned_cols=115 Identities=14% Similarity=0.225 Sum_probs=80.6
Q ss_pred hCCCceEEeccchHH---HhccCCCcceeec----cCc-hhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCC
Q 012563 331 VDGRGYIVQWAPQQQ---VLAHPAVGGFLTH----SGW-NSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEG 402 (460)
Q Consensus 331 ~~~~~~~~~~vp~~~---lL~~~~~~~~I~H----GG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~ 402 (460)
...++.+..++|+.+ +++.+++ +|.. .|. .++.||+++|+|+|+... ..+...+++. ..|..+..
T Consensus 255 l~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~----gg~~Eiv~~~-~~G~~l~~ 327 (380)
T PRK15484 255 IGDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTK----GGITEFVLEG-ITGYHLAE 327 (380)
T ss_pred cCCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCC----CCcHhhcccC-CceEEEeC
Confidence 346677888988644 6888988 7753 333 578899999999999654 3455667663 67875533
Q ss_pred ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 012563 403 KLEKKEIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHILS 459 (460)
Q Consensus 403 ~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
..+.+++.++|.++++| ++.+ ++++..++...+.-+-++.++++.+.+++
T Consensus 328 ~~d~~~la~~I~~ll~d---~~~~----~~~~~ar~~~~~~fsw~~~a~~~~~~l~~ 377 (380)
T PRK15484 328 PMTSDSIISDINRTLAD---PELT----QIAEQAKDFVFSKYSWEGVTQRFEEQIHN 377 (380)
T ss_pred CCCHHHHHHHHHHHHcC---HHHH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46899999999999998 4332 34444444444566778888888877764
No 113
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.01 E-value=0.00013 Score=71.91 Aligned_cols=136 Identities=19% Similarity=0.209 Sum_probs=79.6
Q ss_pred CCCeEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEECCCCCCCchhhccCchhHHhhh------CCCceEEeccchH
Q 012563 271 APKSVIYVSFGSVAAINETEFLEIAWGLANSRVPFLWVVRPGLVDGVEWLEALPKGYLEMV------DGRGYIVQWAPQQ 344 (460)
Q Consensus 271 ~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~vp~~ 344 (460)
++..++|.||.+.....++.+....+-|++.+.-.+|....... + ..++.++. ++++.+..+.++.
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~-~-------~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ 353 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPAS-G-------EARLRRRFAAHGVDPDRIIFSPVAPRE 353 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTT-H-------HHHHHHHHHHTTS-GGGEEEEE---HH
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHH-H-------HHHHHHHHHHcCCChhhEEEcCCCCHH
Confidence 46789999999999999999999999999998888888765421 1 12222222 2666777777765
Q ss_pred HH---hccCCCccee---eccCchhhHHHHhhCCCeeecCcccch-hhHHHHHHHhhceeEeeCCccCHHHHHHHHHHHh
Q 012563 345 QV---LAHPAVGGFL---THSGWNSTLESICEGVPMICQPCLADQ-MVNARYVSHVWRVGLHLEGKLEKKEIETAIRRLM 417 (460)
Q Consensus 345 ~l---L~~~~~~~~I---~HGG~~s~~eal~~GvP~v~~P~~~DQ-~~na~~v~~~lG~G~~~~~~~~~~~l~~~i~~ll 417 (460)
+- +..+|+ ++ ..+|.+|++|||++|||+|.+|-..=. ..-+..+.. +|+...+- .+.++-.+.-.++-
T Consensus 354 ehl~~~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~-lGl~ElIA--~s~~eYv~~Av~La 428 (468)
T PF13844_consen 354 EHLRRYQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRA-LGLPELIA--DSEEEYVEIAVRLA 428 (468)
T ss_dssp HHHHHGGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHH-HT-GGGB---SSHHHHHHHHHHHH
T ss_pred HHHHHhhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHH-cCCchhcC--CCHHHHHHHHHHHh
Confidence 43 344555 65 467889999999999999999954322 233455666 68876554 46666666666677
Q ss_pred cc
Q 012563 418 VE 419 (460)
Q Consensus 418 ~~ 419 (460)
+|
T Consensus 429 ~D 430 (468)
T PF13844_consen 429 TD 430 (468)
T ss_dssp H-
T ss_pred CC
Confidence 77
No 114
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.98 E-value=0.0034 Score=63.80 Aligned_cols=112 Identities=13% Similarity=0.168 Sum_probs=72.1
Q ss_pred CCCceEEeccchHHHhccCCCcceeec----cCchhhHHHHhhCCCeeecCcccchhhHHHHHHHh----h-ceeEeeCC
Q 012563 332 DGRGYIVQWAPQQQVLAHPAVGGFLTH----SGWNSTLESICEGVPMICQPCLADQMVNARYVSHV----W-RVGLHLEG 402 (460)
Q Consensus 332 ~~~~~~~~~vp~~~lL~~~~~~~~I~H----GG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~----l-G~G~~~~~ 402 (460)
.+++.+.....-.+++..+++ +|.- |--+++.||+++|+|+|+- |.......+++. + ..|..++.
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv~~~~~~~~g~~G~lv~~ 426 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELIEGADDEALGPAGEVVPP 426 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHhcCCcccccCCceEEECC
Confidence 366777776566778988888 7644 3347899999999999994 444445555551 0 26777764
Q ss_pred ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 012563 403 KLEKKEIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDH 456 (460)
Q Consensus 403 ~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 456 (460)
-+.+++.++|.++++| ...++ ++++..++.+.+.-+.++.+++..+.
T Consensus 427 -~d~~~la~ai~~ll~~---~~~~~---~~~~~a~~~v~~~~s~~~~~~~y~~l 473 (475)
T cd03813 427 -ADPEALARAILRLLKD---PELRR---AMGEAGRKRVERYYTLERMIDSYRRL 473 (475)
T ss_pred -CCHHHHHHHHHHHhcC---HHHHH---HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 6899999999999998 33222 22333332222344455656555543
No 115
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.94 E-value=0.0003 Score=69.97 Aligned_cols=111 Identities=13% Similarity=0.148 Sum_probs=75.5
Q ss_pred CCceEEeccchHH---HhccCCCcceeeccC----chhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCccC
Q 012563 333 GRGYIVQWAPQQQ---VLAHPAVGGFLTHSG----WNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLE 405 (460)
Q Consensus 333 ~~~~~~~~vp~~~---lL~~~~~~~~I~HGG----~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~ 405 (460)
+++.+.+|+++.+ ++..+++.+||...- -++++||+++|+|+|+- |-......+.+. +.|..+...-+
T Consensus 289 ~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas----~vgg~~e~i~~~-~~G~l~~~~~~ 363 (407)
T cd04946 289 ISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIAT----NVGGTPEIVDNG-GNGLLLSKDPT 363 (407)
T ss_pred ceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeC----CCCCcHHHhcCC-CcEEEeCCCCC
Confidence 5667789999764 555444444776543 46899999999999984 444466777773 58887765458
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 012563 406 KKEIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLV 454 (460)
Q Consensus 406 ~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 454 (460)
.+++.++|.++++|. . ...+|++..++.+++.-+.++..++++
T Consensus 364 ~~~la~~I~~ll~~~---~---~~~~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 364 PNELVSSLSKFIDNE---E---EYQTMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred HHHHHHHHHHHHhCH---H---HHHHHHHHHHHHHHHHcCHHHhHHHhc
Confidence 899999999999872 2 223344444444445556666666654
No 116
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.93 E-value=0.00052 Score=65.20 Aligned_cols=141 Identities=16% Similarity=0.161 Sum_probs=90.1
Q ss_pred CCCeEEEEEecccccCCHHHHHHHHHHH----HhCCCCEEEEECCCCCCCchhhccCchhHHhhhC--CCceEE---ecc
Q 012563 271 APKSVIYVSFGSVAAINETEFLEIAWGL----ANSRVPFLWVVRPGLVDGVEWLEALPKGYLEMVD--GRGYIV---QWA 341 (460)
Q Consensus 271 ~~~~~v~vs~GS~~~~~~~~~~~~~~al----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~v 341 (460)
+.+..+++|+=-..+.. +.+..+..++ +.. ..+.+++....... +-+-...++. +|+.+. +|.
T Consensus 202 ~~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~-~~~~viyp~H~~~~------v~e~~~~~L~~~~~v~li~pl~~~ 273 (383)
T COG0381 202 KDKKYILVTAHRRENVG-EPLEEICEALREIAEEY-PDVIVIYPVHPRPR------VRELVLKRLKNVERVKLIDPLGYL 273 (383)
T ss_pred ccCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhC-CCceEEEeCCCChh------hhHHHHHHhCCCCcEEEeCCcchH
Confidence 35678888875544433 3344444444 444 23444444432111 1111123344 346654 778
Q ss_pred chHHHhccCCCcceeeccCchhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCccCHHHHHHHHHHHhccch
Q 012563 342 PQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEKKEIETAIRRLMVEAE 421 (460)
Q Consensus 342 p~~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~l~~~i~~ll~~~~ 421 (460)
+...++.++-+ ++|-.| |-.-||-..|+|++++=...|++. +++. |.-+.+ ..+.+.+.+++.+++++
T Consensus 274 ~f~~L~~~a~~--iltDSG-giqEEAp~lg~Pvl~lR~~TERPE---~v~a--gt~~lv--g~~~~~i~~~~~~ll~~-- 341 (383)
T COG0381 274 DFHNLMKNAFL--ILTDSG-GIQEEAPSLGKPVLVLRDTTERPE---GVEA--GTNILV--GTDEENILDAATELLED-- 341 (383)
T ss_pred HHHHHHHhceE--EEecCC-chhhhHHhcCCcEEeeccCCCCcc---ceec--CceEEe--CccHHHHHHHHHHHhhC--
Confidence 88889999988 999988 567899999999999999999987 2222 444444 36889999999999998
Q ss_pred HHHHHHHHHHH
Q 012563 422 GQEMRERITCL 432 (460)
Q Consensus 422 ~~~~~~~a~~l 432 (460)
++..++.+..
T Consensus 342 -~~~~~~m~~~ 351 (383)
T COG0381 342 -EEFYERMSNA 351 (383)
T ss_pred -hHHHHHHhcc
Confidence 5666544333
No 117
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.88 E-value=0.0016 Score=63.76 Aligned_cols=100 Identities=12% Similarity=0.128 Sum_probs=68.4
Q ss_pred CCCceEEeccch-HHHhccCCCcceeec--cCchhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCccCHHH
Q 012563 332 DGRGYIVQWAPQ-QQVLAHPAVGGFLTH--SGWNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEKKE 408 (460)
Q Consensus 332 ~~~~~~~~~vp~-~~lL~~~~~~~~I~H--GG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~ 408 (460)
++++.+..+.++ ..++..+++=++.++ |...++.||+++|+|+|+..... .....+.+. ..|..++. -+.++
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~-~~G~lv~~-~d~~~ 334 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDG-ENGYLVPK-GDIEA 334 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccC-CCceEeCC-CcHHH
Confidence 355666677665 558899988334444 23468999999999999954331 234556663 67877763 68999
Q ss_pred HHHHHHHHhccch-HHHHHHHHHHHHHHH
Q 012563 409 IETAIRRLMVEAE-GQEMRERITCLKKNV 436 (460)
Q Consensus 409 l~~~i~~ll~~~~-~~~~~~~a~~l~~~~ 436 (460)
+.++|.++++|.+ .+.+.+++++.++..
T Consensus 335 la~~i~~ll~~~~~~~~~~~~a~~~~~~~ 363 (372)
T cd04949 335 LAEAIIELLNDPKLLQKFSEAAYENAERY 363 (372)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHh
Confidence 9999999999843 345556665554444
No 118
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.77 E-value=0.00052 Score=59.16 Aligned_cols=80 Identities=19% Similarity=0.304 Sum_probs=64.2
Q ss_pred CCCceEEeccch---HHHhccCCCcceeec----cCchhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCcc
Q 012563 332 DGRGYIVQWAPQ---QQVLAHPAVGGFLTH----SGWNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKL 404 (460)
Q Consensus 332 ~~~~~~~~~vp~---~~lL~~~~~~~~I~H----GG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~ 404 (460)
.+++.+..++++ ..++..+++ +|+. |..+++.||+++|+|+|+ .|-..+...+.+. +.|..++. -
T Consensus 72 ~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~----~~~~~~~e~~~~~-~~g~~~~~-~ 143 (172)
T PF00534_consen 72 KENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIA----SDIGGNNEIINDG-VNGFLFDP-N 143 (172)
T ss_dssp GTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEE----ESSTHHHHHSGTT-TSEEEEST-T
T ss_pred ccccccccccccccccccccccee--ccccccccccccccccccccccceee----ccccCCceeeccc-cceEEeCC-C
Confidence 467788899873 458889888 8877 566799999999999998 5667777788884 77988875 5
Q ss_pred CHHHHHHHHHHHhcc
Q 012563 405 EKKEIETAIRRLMVE 419 (460)
Q Consensus 405 ~~~~l~~~i~~ll~~ 419 (460)
+.+++.++|.+++++
T Consensus 144 ~~~~l~~~i~~~l~~ 158 (172)
T PF00534_consen 144 DIEELADAIEKLLND 158 (172)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCC
Confidence 999999999999998
No 119
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.00023 Score=56.48 Aligned_cols=124 Identities=16% Similarity=0.171 Sum_probs=76.9
Q ss_pred EEEEecccccCCHHHHH--HHHHHHHhCCCCEEEEECCCCCCCchhhccCc-hhHHhhhCCCceEE--eccch-HHHhcc
Q 012563 276 IYVSFGSVAAINETEFL--EIAWGLANSRVPFLWVVRPGLVDGVEWLEALP-KGYLEMVDGRGYIV--QWAPQ-QQVLAH 349 (460)
Q Consensus 276 v~vs~GS~~~~~~~~~~--~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~vp~-~~lL~~ 349 (460)
+|||.||....=.+... ++..-.+....++|+.+|+... .| ++. ++. .+.+- +.+-..
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d~--------kpvagl--------~v~~F~~~~kiQsli~d 65 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGDI--------KPVAGL--------RVYGFDKEEKIQSLIHD 65 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCCc--------cccccc--------EEEeechHHHHHHHhhc
Confidence 78999998541001111 1111222234578888887541 22 222 343 44443 456666
Q ss_pred CCCcceeeccCchhhHHHHhhCCCeeecCccc--------chhhHHHHHHHhhceeEeeCC-cc-CHHHHHHHHHHHhc
Q 012563 350 PAVGGFLTHSGWNSTLESICEGVPMICQPCLA--------DQMVNARYVSHVWRVGLHLEG-KL-EKKEIETAIRRLMV 418 (460)
Q Consensus 350 ~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~--------DQ~~na~~v~~~lG~G~~~~~-~~-~~~~l~~~i~~ll~ 418 (460)
+++ +|+|+|.||++.++..++|.|++|-.. +|-.-|..+.+ ++.-..... +. -.+-+.....+++.
T Consensus 66 arI--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae-~~~vv~~spte~~L~a~l~~s~~~v~~ 141 (161)
T COG5017 66 ARI--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAE-INYVVACSPTELVLQAGLQVSVADVLH 141 (161)
T ss_pred ceE--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHh-cCceEEEcCCchhhHHhHhhhhhhhcC
Confidence 666 999999999999999999999999754 57778888888 688777664 21 23334444444443
No 120
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.68 E-value=0.022 Score=58.77 Aligned_cols=74 Identities=12% Similarity=0.163 Sum_probs=52.1
Q ss_pred ceEEeccchH-HHhccCCCcceeecc---C-chhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCccCHHHH
Q 012563 335 GYIVQWAPQQ-QVLAHPAVGGFLTHS---G-WNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEKKEI 409 (460)
Q Consensus 335 ~~~~~~vp~~-~lL~~~~~~~~I~HG---G-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~l 409 (460)
+.+..+.++. .++..+++ ||.-+ | .+++.||+++|+|+|+.-..+... +.+. +-|. +. -+.+++
T Consensus 603 V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~~g-~nGl-l~--~D~Eaf 671 (794)
T PLN02501 603 LNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FRSF-PNCL-TY--KTSEDF 671 (794)
T ss_pred EEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----Eeec-CCeE-ec--CCHHHH
Confidence 4555666754 48999988 87643 3 468999999999999976654321 2231 3333 22 478999
Q ss_pred HHHHHHHhcc
Q 012563 410 ETAIRRLMVE 419 (460)
Q Consensus 410 ~~~i~~ll~~ 419 (460)
.++|.+++++
T Consensus 672 AeAI~~LLsd 681 (794)
T PLN02501 672 VAKVKEALAN 681 (794)
T ss_pred HHHHHHHHhC
Confidence 9999999987
No 121
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.67 E-value=0.017 Score=53.21 Aligned_cols=105 Identities=18% Similarity=0.142 Sum_probs=68.6
Q ss_pred CCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCC-CCCCCCCCceEEeCCCCCCCCCCCCHH-HHHHHHHHhcchhHHHHH
Q 012563 22 LPFQGHINPMLQLGSILYSKGFSITIIHTKFNS-PNSCNYPHFDFHSISDGLTDPSAEDST-TILITLNAKCMVPFRNCL 99 (460)
Q Consensus 22 ~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l 99 (460)
.+-.-|+.-+..+-.+|.++||+|.+.+.++.. .+.-+.-|+.+..+...- ..+.. .++....+. ..|
T Consensus 7 I~n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~ygf~~~~Igk~g----~~tl~~Kl~~~~eR~------~~L 76 (346)
T COG1817 7 IGNPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLYGFPYKSIGKHG----GVTLKEKLLESAERV------YKL 76 (346)
T ss_pred cCCcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHhCCCeEeecccC----CccHHHHHHHHHHHH------HHH
Confidence 455678999999999999999999999986333 112234578887776311 11122 222222211 123
Q ss_pred HHHhhcCCCCCCCCCCceEEEEcCcchHHH-HHhhcCCCeEEEeCcc
Q 012563 100 AKLVSNTNNNNAQEDSVACLITDFLWQFTH-VADEFKLPTIILQTHS 145 (460)
Q Consensus 100 ~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~-~A~~lgiP~v~~~~~~ 145 (460)
.++..+. +||+.+. -..+..+ +|.-+|+|.+.+.-+.
T Consensus 77 ~ki~~~~--------kpdv~i~-~~s~~l~rvafgLg~psIi~~D~e 114 (346)
T COG1817 77 SKIIAEF--------KPDVAIG-KHSPELPRVAFGLGIPSIIFVDNE 114 (346)
T ss_pred HHHHhhc--------CCceEee-cCCcchhhHHhhcCCceEEecCCh
Confidence 3333322 8999999 5678888 9999999999977663
No 122
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=97.64 E-value=0.083 Score=52.50 Aligned_cols=176 Identities=12% Similarity=0.168 Sum_probs=100.6
Q ss_pred hhhhccCCCCeEEEEEecccccC------C----HHHHHHHHHHHHhCCCCEEEEECCCCC----CCchhhccCchhHHh
Q 012563 264 ISWLDKQAPKSVIYVSFGSVAAI------N----ETEFLEIAWGLANSRVPFLWVVRPGLV----DGVEWLEALPKGYLE 329 (460)
Q Consensus 264 ~~~l~~~~~~~~v~vs~GS~~~~------~----~~~~~~~~~al~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~ 329 (460)
..|+...+.+++|.|+.-..... . .+.+..+++.+.+.++++++.---... .++. .....+.+
T Consensus 225 ~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~---~~~~~l~~ 301 (426)
T PRK10017 225 QHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDR---MVALNLRQ 301 (426)
T ss_pred hhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchH---HHHHHHHH
Confidence 34554334567888886644311 1 233444555555568887765432110 1111 01123334
Q ss_pred hhC--CCceEE--eccch--HHHhccCCCcceeeccCchhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEe-eCC
Q 012563 330 MVD--GRGYIV--QWAPQ--QQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLH-LEG 402 (460)
Q Consensus 330 ~~~--~~~~~~--~~vp~--~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~-~~~ 402 (460)
.++ .+.++. .+-+. ..++++|++ +|..= .=++.-|+..|||.+.+++ | +-....+++ +|.... .+.
T Consensus 302 ~~~~~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~R-lHa~I~a~~~gvP~i~i~Y--~-~K~~~~~~~-lg~~~~~~~~ 374 (426)
T PRK10017 302 HVSDPARYHVVMDELNDLEMGKILGACEL--TVGTR-LHSAIISMNFGTPAIAINY--E-HKSAGIMQQ-LGLPEMAIDI 374 (426)
T ss_pred hcccccceeEecCCCChHHHHHHHhhCCE--EEEec-chHHHHHHHcCCCEEEeee--h-HHHHHHHHH-cCCccEEech
Confidence 433 233332 23343 368889988 88642 3346678899999999998 3 334445567 788765 444
Q ss_pred -ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012563 403 -KLEKKEIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHI 457 (460)
Q Consensus 403 -~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (460)
.++.++|.+.+.++++|. +.+++..++--+.++. ...+.+.++++.|
T Consensus 375 ~~l~~~~Li~~v~~~~~~r--~~~~~~l~~~v~~~r~------~~~~~~~~~~~~~ 422 (426)
T PRK10017 375 RHLLDGSLQAMVADTLGQL--PALNARLAEAVSRERQ------TGMQMVQSVLERI 422 (426)
T ss_pred hhCCHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHH------HHHHHHHHHHHHh
Confidence 789999999999999985 4555555544444442 2445555555544
No 123
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.44 E-value=0.0011 Score=64.07 Aligned_cols=111 Identities=18% Similarity=0.276 Sum_probs=81.4
Q ss_pred CCCceEEeccchHHH---hccCCCcceeec-------cCc------hhhHHHHhhCCCeeecCcccchhhHHHHHHHhhc
Q 012563 332 DGRGYIVQWAPQQQV---LAHPAVGGFLTH-------SGW------NSTLESICEGVPMICQPCLADQMVNARYVSHVWR 395 (460)
Q Consensus 332 ~~~~~~~~~vp~~~l---L~~~~~~~~I~H-------GG~------~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG 395 (460)
.+|+.+.+|+|+.++ |.. +.+++... |.+ +-+.+.+++|+|+|+ .++...+..|++. +
T Consensus 206 ~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~----~~~~~~~~~V~~~-~ 279 (333)
T PRK09814 206 SANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIV----WSKAAIADFIVEN-G 279 (333)
T ss_pred CCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEE----CCCccHHHHHHhC-C
Confidence 356688899998765 444 33333221 111 227778999999998 4567788999996 9
Q ss_pred eeEeeCCccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 012563 396 VGLHLEGKLEKKEIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDH 456 (460)
Q Consensus 396 ~G~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 456 (460)
+|..++ +.+++.+++.++. +++...+++|+++++++++ .|.--.+++++++..
T Consensus 280 ~G~~v~---~~~el~~~l~~~~-~~~~~~m~~n~~~~~~~~~----~g~~~~~~~~~~~~~ 332 (333)
T PRK09814 280 LGFVVD---SLEELPEIIDNIT-EEEYQEMVENVKKISKLLR----NGYFTKKALVDAIKE 332 (333)
T ss_pred ceEEeC---CHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHh----cchhHHHHHHHHHhc
Confidence 999997 5678999998854 3345779999999999999 677777888777653
No 124
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.32 E-value=0.043 Score=48.96 Aligned_cols=48 Identities=23% Similarity=0.168 Sum_probs=35.2
Q ss_pred CCCceEEeccch----HHHhccCCCcceeeccC----chhhHHHHhhCCCeeecCccc
Q 012563 332 DGRGYIVQWAPQ----QQVLAHPAVGGFLTHSG----WNSTLESICEGVPMICQPCLA 381 (460)
Q Consensus 332 ~~~~~~~~~vp~----~~lL~~~~~~~~I~HGG----~~s~~eal~~GvP~v~~P~~~ 381 (460)
..|+.+..+++. ..++..+++ +|+-.. .+++.||+++|+|+|+.+..+
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~ 215 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGG 215 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCC
Confidence 356677777632 224444777 888776 689999999999999977654
No 125
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.29 E-value=0.0012 Score=54.32 Aligned_cols=80 Identities=23% Similarity=0.304 Sum_probs=50.3
Q ss_pred CCCceEEeccch-HHHhccCCCcceeec--cC-chhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCccCHH
Q 012563 332 DGRGYIVQWAPQ-QQVLAHPAVGGFLTH--SG-WNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEKK 407 (460)
Q Consensus 332 ~~~~~~~~~vp~-~~lL~~~~~~~~I~H--GG-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~ 407 (460)
.+++.+..|++. .+++..+++.+..+. .| .+++.|++++|+|+|+.+.. ....++.. +.|..+. -+++
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~~~~-~~~~~~~--~~~~ 123 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIVEED-GCGVLVA--NDPE 123 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE-T--T-HH
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhheeec-CCeEEEC--CCHH
Confidence 457788899874 558999998555442 23 48999999999999996661 23344443 7887774 4999
Q ss_pred HHHHHHHHHhcc
Q 012563 408 EIETAIRRLMVE 419 (460)
Q Consensus 408 ~l~~~i~~ll~~ 419 (460)
++.++|.++++|
T Consensus 124 ~l~~~i~~l~~d 135 (135)
T PF13692_consen 124 ELAEAIERLLND 135 (135)
T ss_dssp HHHHHHHHHHH-
T ss_pred HHHHHHHHHhcC
Confidence 999999999875
No 126
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.27 E-value=0.013 Score=56.24 Aligned_cols=134 Identities=15% Similarity=0.106 Sum_probs=75.7
Q ss_pred CCeEEEEEeccccc---CCHHHHHHHHHHHHhCCCCEEEEECCCCCCCchhhccCchhHHhhhCCCceEEec--cch-HH
Q 012563 272 PKSVIYVSFGSVAA---INETEFLEIAWGLANSRVPFLWVVRPGLVDGVEWLEALPKGYLEMVDGRGYIVQW--APQ-QQ 345 (460)
Q Consensus 272 ~~~~v~vs~GS~~~---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--vp~-~~ 345 (460)
+++.|.+..|+... .+.+.+.++++.+.+.+.++++..++... ......+.+..+. ..+..- +++ ..
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e------~~~~~~i~~~~~~-~~l~g~~sL~el~a 250 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAE------KQRAERIAEALPG-AVVLPKMSLAEVAA 250 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHH------HHHHHHHHhhCCC-CeecCCCCHHHHHH
Confidence 45666666665433 56778888888887667777766554320 0111223222222 123222 333 56
Q ss_pred HhccCCCcceeeccCchhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeC-C-ccCHHHHHHHHHHHh
Q 012563 346 VLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLE-G-KLEKKEIETAIRRLM 417 (460)
Q Consensus 346 lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~-~-~~~~~~l~~~i~~ll 417 (460)
++++|++ +|+. -.|.++=|.+.|+|.|++=-..+-..++-+-.. ..-+.-. . .++++++.+++.++|
T Consensus 251 li~~a~l--~I~~-DSgp~HlAaa~g~P~i~lfg~t~p~~~~P~~~~--~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 251 LLAGADA--VVGV-DTGLTHLAAALDKPTVTLYGATDPGRTGGYGKP--NVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred HHHcCCE--EEeC-CChHHHHHHHcCCCEEEEECCCCHhhcccCCCC--ceEEccCccCCCCHHHHHHHHHhhC
Confidence 9999998 9987 568899999999999985111111111100000 0001111 1 799999999998875
No 127
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0087 Score=59.49 Aligned_cols=132 Identities=14% Similarity=0.179 Sum_probs=89.2
Q ss_pred CCCeEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEECCCCCCCchhhccCchhHHhhh------CCCceEEeccch-
Q 012563 271 APKSVIYVSFGSVAAINETEFLEIAWGLANSRVPFLWVVRPGLVDGVEWLEALPKGYLEMV------DGRGYIVQWAPQ- 343 (460)
Q Consensus 271 ~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~vp~- 343 (460)
++..+||+||+......++.+...+.-++..+--++|..+++...+ ....+++.. .++.++..-.|.
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~------~~~~l~~la~~~Gv~~eRL~f~p~~~~~ 500 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAE------INARLRDLAEREGVDSERLRFLPPAPNE 500 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHH------HHHHHHHHHHHcCCChhheeecCCCCCH
Confidence 5678999999999999999999999999999888999888753211 223333222 255566555554
Q ss_pred --HHHhccCCCcceee---ccCchhhHHHHhhCCCeeecCcccchhh--HHHHHHHhhceeEeeCCccCHHHHHHHH
Q 012563 344 --QQVLAHPAVGGFLT---HSGWNSTLESICEGVPMICQPCLADQMV--NARYVSHVWRVGLHLEGKLEKKEIETAI 413 (460)
Q Consensus 344 --~~lL~~~~~~~~I~---HGG~~s~~eal~~GvP~v~~P~~~DQ~~--na~~v~~~lG~G~~~~~~~~~~~l~~~i 413 (460)
.+=+..+++ |+- -||..|+.|+|..|||+|..+ ++|+. |+.-+...+|+-..+-. -.++=+..++
T Consensus 501 ~h~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~vA~-s~~dYV~~av 572 (620)
T COG3914 501 DHRARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELVAD-SRADYVEKAV 572 (620)
T ss_pred HHHHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhhcC-CHHHHHHHHH
Confidence 334555666 775 699999999999999999865 77765 55555443465544432 2233344444
No 128
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.09 E-value=0.018 Score=58.29 Aligned_cols=114 Identities=22% Similarity=0.235 Sum_probs=73.5
Q ss_pred CCCceEEeccch-HHHhccCCCcceeec---cC-chhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCccCH
Q 012563 332 DGRGYIVQWAPQ-QQVLAHPAVGGFLTH---SG-WNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEK 406 (460)
Q Consensus 332 ~~~~~~~~~vp~-~~lL~~~~~~~~I~H---GG-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~ 406 (460)
.+++.+..|... ..+|..+++ ||.. -| -+++.||+++|+|+|+... ..+...+.+. .-|..++. -+.
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV~dG-~nG~LVp~-~D~ 525 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECFIEG-VSGFILDD-AQT 525 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHcccC-CcEEEECC-CCh
Confidence 367788888654 458899998 8863 45 4699999999999998543 4566777774 77888874 455
Q ss_pred HHHHHHHH---HHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 012563 407 KEIETAIR---RLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHILS 459 (460)
Q Consensus 407 ~~l~~~i~---~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
+.+.+++. ++... .+...++++..++-+.+.-+.+..+++..+.+.+
T Consensus 526 ~aLa~ai~lA~aL~~l------l~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~~ 575 (578)
T PRK15490 526 VNLDQACRYAEKLVNL------WRSRTGICQQTQSFLQERFTVEHMVGTFVKTIAS 575 (578)
T ss_pred hhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence 55555552 22222 1112234344444444566788888887776654
No 129
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.90 E-value=0.0011 Score=50.77 Aligned_cols=62 Identities=16% Similarity=0.230 Sum_probs=49.4
Q ss_pred hhhhhccCCCCeEEEEEecccccC---CH--HHHHHHHHHHHhCCCCEEEEECCCCCCCchhhccCchhH
Q 012563 263 SISWLDKQAPKSVIYVSFGSVAAI---NE--TEFLEIAWGLANSRVPFLWVVRPGLVDGVEWLEALPKGY 327 (460)
Q Consensus 263 l~~~l~~~~~~~~v~vs~GS~~~~---~~--~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 327 (460)
+.+|+...++++.|+||+||.... .. ..+..++++++.++..+|..+....... ++.+|+|+
T Consensus 30 ~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~~~---lg~lP~nV 96 (97)
T PF06722_consen 30 VPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQRAE---LGELPDNV 96 (97)
T ss_dssp EEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCCGG---CCS-TTTE
T ss_pred CCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHHHh---hCCCCCCC
Confidence 667998888999999999999873 22 4788899999999999999998776432 56677765
No 130
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.86 E-value=0.012 Score=48.53 Aligned_cols=103 Identities=10% Similarity=0.098 Sum_probs=64.0
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCCCCCHHHHHHHHHHhcchhH
Q 012563 16 RVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNSPNSCNYPHFDFHSISDGLTDPSAEDSTTILITLNAKCMVPF 95 (460)
Q Consensus 16 ~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 95 (460)
||++++.....| ...+++.|.++||+|++++............++.++.++..... ....+. + . .+
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~~~i~~~~~~~~~k~-----~~~~~~-~----~-~l 66 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEIIEGIKVIRLPSPRKS-----PLNYIK-Y----F-RL 66 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhHhCCeEEEEecCCCCc-----cHHHHH-H----H-HH
Confidence 577777666555 56789999999999999999544434344578888888632111 122221 1 0 12
Q ss_pred HHHHHHHhhcCCCCCCCCCCceEEEEcCcchH---HH-HHhhcC-CCeEEEeCc
Q 012563 96 RNCLAKLVSNTNNNNAQEDSVACLITDFLWQF---TH-VADEFK-LPTIILQTH 144 (460)
Q Consensus 96 ~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~---~~-~A~~lg-iP~v~~~~~ 144 (460)
...+++. +||+|.+...... +. ++...| +|.|....+
T Consensus 67 ~k~ik~~------------~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~hg 108 (139)
T PF13477_consen 67 RKIIKKE------------KPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVHG 108 (139)
T ss_pred HHHhccC------------CCCEEEEecCChHHHHHHHHHHHcCCCCEEEEecC
Confidence 2333333 8999988765432 22 567778 888865443
No 131
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.65 E-value=0.24 Score=48.20 Aligned_cols=106 Identities=13% Similarity=0.133 Sum_probs=69.6
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCceE-EeCCCCCCCCCCCCHHHHHHHHHH
Q 012563 13 NGRRVILFPLPFQGHINPMLQLGSILYSK--GFSITIIHTKFNSPNSCNYPHFDF-HSISDGLTDPSAEDSTTILITLNA 89 (460)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~lA~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 89 (460)
..|||||+-....|++.-..++.+.|+++ +.+|++++.+...+.....+.++- +.++.. .. .....+.
T Consensus 4 ~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P~id~vi~~~~~--~~---~~~~~~~---- 74 (352)
T PRK10422 4 PFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSENPEINALYGIKNK--KA---GASEKIK---- 74 (352)
T ss_pred CCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccCCCceEEEEeccc--cc---cHHHHHH----
Confidence 45899999999999999999999999998 899999998766655554455542 333311 00 0010000
Q ss_pred hcchhHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH-HHhhcCCCeEE
Q 012563 90 KCMVPFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH-VADEFKLPTII 140 (460)
Q Consensus 90 ~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~-~A~~lgiP~v~ 140 (460)
.+...++++.+. ++|++|.-....... ++...|.|..+
T Consensus 75 ----~~~~l~~~lr~~---------~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 75 ----NFFSLIKVLRAN---------KYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred ----HHHHHHHHHhhC---------CCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 122344555544 899999765444445 77777888755
No 132
>PRK14098 glycogen synthase; Provisional
Probab=96.64 E-value=0.027 Score=57.37 Aligned_cols=115 Identities=6% Similarity=-0.007 Sum_probs=73.2
Q ss_pred hhCCCceEEeccchH---HHhccCCCcceeecc---Cc-hhhHHHHhhCCCeeecCccc--chhhHHHHHHHhhceeEee
Q 012563 330 MVDGRGYIVQWAPQQ---QVLAHPAVGGFLTHS---GW-NSTLESICEGVPMICQPCLA--DQMVNARYVSHVWRVGLHL 400 (460)
Q Consensus 330 ~~~~~~~~~~~vp~~---~lL~~~~~~~~I~HG---G~-~s~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~lG~G~~~ 400 (460)
+.++++.+..+++.. .+++.+++ |+.-. |. .+.+||+++|+|.|+....+ |... ...++. +-|..+
T Consensus 359 ~~~~~V~~~g~~~~~~~~~~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~--~~~~~~-~~G~l~ 433 (489)
T PRK14098 359 EHPEQVSVQTEFTDAFFHLAIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIE--EVSEDK-GSGFIF 433 (489)
T ss_pred HCCCCEEEEEecCHHHHHHHHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeee--cCCCCC-CceeEe
Confidence 445777888877764 58888888 87543 22 37789999999888866533 2211 111233 677777
Q ss_pred CCccCHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 012563 401 EGKLEKKEIETAIRRLMV---EAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHILS 459 (460)
Q Consensus 401 ~~~~~~~~l~~~i~~ll~---~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
+. -+++.|.++|.++++ + ++. .+ +..++++.+.-|-++.+++.++..++
T Consensus 434 ~~-~d~~~la~ai~~~l~~~~~---~~~---~~---~~~~~~~~~~fsw~~~a~~y~~lY~~ 485 (489)
T PRK14098 434 HD-YTPEALVAKLGEALALYHD---EER---WE---ELVLEAMERDFSWKNSAEEYAQLYRE 485 (489)
T ss_pred CC-CCHHHHHHHHHHHHHHHcC---HHH---HH---HHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 64 689999999998763 3 221 12 22223344666777777777776654
No 133
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=96.63 E-value=0.29 Score=47.50 Aligned_cols=102 Identities=12% Similarity=0.020 Sum_probs=68.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCceEE-eCCCCCCCCCCCCHHHHHHHHHHhc
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSK--GFSITIIHTKFNSPNSCNYPHFDFH-SISDGLTDPSAEDSTTILITLNAKC 91 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (460)
|||||+-..+.|++.-..++.+.|+++ +.+|++++.+.........+.++-+ .++.. .. ...+
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P~vd~vi~~~~~--~~----~~~~-------- 66 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRMPEVNEAIPMPLG--HG----ALEI-------- 66 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcCCccCEEEecccc--cc----hhhh--------
Confidence 789999999999999999999999997 8999999986655555545555432 22211 00 0000
Q ss_pred chhHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH-HHhhcCCCeEE
Q 012563 92 MVPFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH-VADEFKLPTII 140 (460)
Q Consensus 92 ~~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~-~A~~lgiP~v~ 140 (460)
......++++.+. ++|++|.-....-.. ++...|+|.-+
T Consensus 67 -~~~~~l~~~lr~~---------~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 67 -GERRRLGHSLREK---------RYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred -HHHHHHHHHHHhc---------CCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 0122344555544 899999775555555 88888888765
No 134
>PHA01633 putative glycosyl transferase group 1
Probab=96.48 E-value=0.043 Score=52.57 Aligned_cols=101 Identities=17% Similarity=0.129 Sum_probs=62.8
Q ss_pred CCCceEE---eccchH---HHhccCCCcceeecc---C-chhhHHHHhhCCCeeecCc------ccch------hhHHHH
Q 012563 332 DGRGYIV---QWAPQQ---QVLAHPAVGGFLTHS---G-WNSTLESICEGVPMICQPC------LADQ------MVNARY 389 (460)
Q Consensus 332 ~~~~~~~---~~vp~~---~lL~~~~~~~~I~HG---G-~~s~~eal~~GvP~v~~P~------~~DQ------~~na~~ 389 (460)
++++.+. +++++. .++..+++ ||.-. | -.+++||+++|+|+|+--. .+|+ ..+...
T Consensus 200 ~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~ 277 (335)
T PHA01633 200 PANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEE 277 (335)
T ss_pred CCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHH
Confidence 4556776 445543 57888888 88642 4 3588999999999998533 2332 233322
Q ss_pred HH--HhhceeEeeCCccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Q 012563 390 VS--HVWRVGLHLEGKLEKKEIETAIRRLMVEAEGQEMRERITCLKKNV 436 (460)
Q Consensus 390 v~--~~lG~G~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~ 436 (460)
.. +. |.|..++ ..++++++++|.+++...+.+....++++.++++
T Consensus 278 ~~~~~~-g~g~~~~-~~d~~~la~ai~~~~~~~~~~~~~~~~~~~a~~f 324 (335)
T PHA01633 278 YYDKEH-GQKWKIH-KFQIEDMANAIILAFELQDREERSMKLKELAKKY 324 (335)
T ss_pred hcCccc-Cceeeec-CCCHHHHHHHHHHHHhccChhhhhHHHHHHHHhc
Confidence 22 33 6777776 4899999999999955422123334444444444
No 135
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.45 E-value=0.034 Score=55.75 Aligned_cols=151 Identities=19% Similarity=0.271 Sum_probs=95.0
Q ss_pred CCCeEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEECCCCCCCchhhccCchhHHhh------hCCCceEEeccchH
Q 012563 271 APKSVIYVSFGSVAAINETEFLEIAWGLANSRVPFLWVVRPGLVDGVEWLEALPKGYLEM------VDGRGYIVQWAPQQ 344 (460)
Q Consensus 271 ~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~vp~~ 344 (460)
++..+||.+|--....++..+....+-|.+.+.-++|....... ++ .+|... .++++.+..-+.-.
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~-ge-------~rf~ty~~~~Gl~p~riifs~va~k~ 827 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAV-GE-------QRFRTYAEQLGLEPDRIIFSPVAAKE 827 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEecccc-ch-------HHHHHHHHHhCCCccceeeccccchH
Confidence 45688998887777789999999999999999999999876532 11 122111 12444444333322
Q ss_pred H-----HhccCCCcceeeccCchhhHHHHhhCCCeeecCcccchhhH-HHHHHHhhceeEeeCCccCHHHHHHHHHHHhc
Q 012563 345 Q-----VLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCLADQMVN-ARYVSHVWRVGLHLEGKLEKKEIETAIRRLMV 418 (460)
Q Consensus 345 ~-----lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~DQ~~n-a~~v~~~lG~G~~~~~~~~~~~l~~~i~~ll~ 418 (460)
+ .|..-.+.-+.+. |..|.++.|++|||||.+|...--... +-.+.. +|+|..+- .+.++-.+.--++-.
T Consensus 828 eHvrr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~-~Gl~hlia--k~~eEY~~iaV~Lat 903 (966)
T KOG4626|consen 828 EHVRRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTA-LGLGHLIA--KNREEYVQIAVRLAT 903 (966)
T ss_pred HHHHhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHH-cccHHHHh--hhHHHHHHHHHHhhc
Confidence 2 3333334446665 688999999999999999986544333 345566 69988554 355555555555666
Q ss_pred cchHHHHHHHHHHHHHHHHHH
Q 012563 419 EAEGQEMRERITCLKKNVDAC 439 (460)
Q Consensus 419 ~~~~~~~~~~a~~l~~~~~~~ 439 (460)
| ++..++++.+++++
T Consensus 904 d------~~~L~~lr~~l~~~ 918 (966)
T KOG4626|consen 904 D------KEYLKKLRAKLRKA 918 (966)
T ss_pred C------HHHHHHHHHHHHHH
Confidence 6 33344444444443
No 136
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=96.33 E-value=0.15 Score=49.36 Aligned_cols=104 Identities=13% Similarity=0.095 Sum_probs=68.1
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCce-EEeCCCCCCCCCCCCHHHHHHHHHHhcc
Q 012563 16 RVILFPLPFQGHINPMLQLGSILYSK--GFSITIIHTKFNSPNSCNYPHFD-FHSISDGLTDPSAEDSTTILITLNAKCM 92 (460)
Q Consensus 16 ~il~~~~~~~GHv~p~l~lA~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (460)
||||+-..+.|++.-..++.+.|+++ +.+|++++.+...+.....+.++ ++.++...... .. ..+.
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~vd~vi~~~~~~~~~----~~---~~~~---- 69 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSENPDINALYGLDRKKAKA----GE---RKLA---- 69 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcCCCccEEEEeChhhhcc----hH---HHHH----
Confidence 58999999999999999999999997 89999999976555555445554 34444211000 00 0010
Q ss_pred hhHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH-HHhhcCCCeEE
Q 012563 93 VPFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH-VADEFKLPTII 140 (460)
Q Consensus 93 ~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~-~A~~lgiP~v~ 140 (460)
.....+..+.+. ++|++|.-....... ++...|.|.-+
T Consensus 70 -~~~~l~~~lr~~---------~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 70 -NQFHLIKVLRAN---------RYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred -HHHHHHHHHHhC---------CCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 112234445443 899999765445555 88888999765
No 137
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.32 E-value=0.27 Score=47.45 Aligned_cols=105 Identities=18% Similarity=0.060 Sum_probs=69.2
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCCCCCHHHHHHHHHHhc
Q 012563 14 GRRVILFPLPFQGHINPMLQLGSILYSK--GFSITIIHTKFNSPNSCNYPHFDFHSISDGLTDPSAEDSTTILITLNAKC 91 (460)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~lA~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (460)
.|+|+++-....|++.-.+++-..|+++ +.+++++++....+.....+.++-+-.-+. ... + ..+
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~p~I~~vi~~~~--~~~-----~--~~~---- 67 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLNPEIDKVIIIDK--KKK-----G--LGL---- 67 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcChHhhhhccccc--ccc-----c--cch----
Confidence 4899999999999999999999999998 599999999666555554444433222111 000 0 000
Q ss_pred chhHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH-HHhhcCCCeEEE
Q 012563 92 MVPFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH-VADEFKLPTIIL 141 (460)
Q Consensus 92 ~~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~-~A~~lgiP~v~~ 141 (460)
.......+.+.+. ++|+||.-....-.. ++...++|.-.-
T Consensus 68 -~~~~~l~~~lr~~---------~yD~vidl~~~~ksa~l~~~~~~~~r~g 108 (334)
T COG0859 68 -KERLALLRTLRKE---------RYDAVIDLQGLLKSALLALLLGIPFRIG 108 (334)
T ss_pred -HHHHHHHHHhhcc---------CCCEEEECcccHHHHHHHHHhCCCcccc
Confidence 1122334444332 799999877666666 888888888763
No 138
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.20 E-value=0.36 Score=46.50 Aligned_cols=101 Identities=11% Similarity=0.045 Sum_probs=65.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCceE-EeCCCCCCCCCCCCHHHHHHHHHHhcc
Q 012563 16 RVILFPLPFQGHINPMLQLGSILYSK--GFSITIIHTKFNSPNSCNYPHFDF-HSISDGLTDPSAEDSTTILITLNAKCM 92 (460)
Q Consensus 16 ~il~~~~~~~GHv~p~l~lA~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (460)
||||+-..+.|++.-..++.+.|++. +.+|++++.+...+.....+.++- +.++.. .. ...+.
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~id~v~~~~~~--~~----~~~~~-------- 66 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERMPEIRQAIDMPLG--HG----ALELT-------- 66 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcCchhceeeecCCc--cc----chhhh--------
Confidence 68999999999999999999999997 899999998655444444444432 222211 11 00110
Q ss_pred hhHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH-HHhhcCCCeEE
Q 012563 93 VPFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH-VADEFKLPTII 140 (460)
Q Consensus 93 ~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~-~A~~lgiP~v~ 140 (460)
.....++++.+. ++|++|.-....... ++...|+|.-+
T Consensus 67 -~~~~~~~~lr~~---------~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 67 -ERRRLGRSLREE---------RYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred -HHHHHHHHHhhc---------CCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 112234445443 899999876555555 77777888654
No 139
>PHA01630 putative group 1 glycosyl transferase
Probab=96.15 E-value=0.17 Score=48.63 Aligned_cols=112 Identities=9% Similarity=0.093 Sum_probs=65.3
Q ss_pred ccchHH---HhccCCCcceee--c-cC-chhhHHHHhhCCCeeecCccc--chhh---HHHHHHHh----------hcee
Q 012563 340 WAPQQQ---VLAHPAVGGFLT--H-SG-WNSTLESICEGVPMICQPCLA--DQMV---NARYVSHV----------WRVG 397 (460)
Q Consensus 340 ~vp~~~---lL~~~~~~~~I~--H-GG-~~s~~eal~~GvP~v~~P~~~--DQ~~---na~~v~~~----------lG~G 397 (460)
++|+.+ +++.+++ ||. + .| -.++.||+++|+|+|+.-..+ |... |+..+... .++|
T Consensus 197 ~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G 274 (331)
T PHA01630 197 PLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVG 274 (331)
T ss_pred cCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCcccc
Confidence 366544 6888888 763 2 33 468999999999999966543 3221 11111100 0345
Q ss_pred EeeCCccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 012563 398 LHLEGKLEKKEIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHILS 459 (460)
Q Consensus 398 ~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
..++ .+.+++.+++.+++.|.+.+..+++.+.-+.... +.-+.++.++++.+.+++
T Consensus 275 ~~v~--~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~----~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 275 YFLD--PDIEDAYQKLLEALANWTPEKKKENLEGRAILYR----ENYSYNAIAKMWEKILEK 330 (331)
T ss_pred cccC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHhc
Confidence 5554 3678888888888876211233333222222222 456688888888887765
No 140
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=96.15 E-value=0.047 Score=41.47 Aligned_cols=83 Identities=12% Similarity=0.153 Sum_probs=54.4
Q ss_pred ccCchhhHHHHhhCCCeeecCcccchhhHHHHHHHhhc-eeEeeCCccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Q 012563 358 HSGWNSTLESICEGVPMICQPCLADQMVNARYVSHVWR-VGLHLEGKLEKKEIETAIRRLMVEAEGQEMRERITCLKKNV 436 (460)
Q Consensus 358 HGG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG-~G~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~ 436 (460)
+|-...+.|++++|+|+|.-.. ......+.. | -++..+ +.+++.++|..+++|+ ...++.+++-.+.+
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~~--~~~~~~~~---~~~el~~~i~~ll~~~--~~~~~ia~~a~~~v 77 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFED--GEHIITYN---DPEELAEKIEYLLENP--EERRRIAKNARERV 77 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcCC--CCeEEEEC---CHHHHHHHHHHHHCCH--HHHHHHHHHHHHHH
Confidence 5556789999999999999554 333333333 4 333333 8999999999999983 23333333333333
Q ss_pred HHHHhcCCChHHHHHHHHH
Q 012563 437 DACLRQGGSSHQALGRLVD 455 (460)
Q Consensus 437 ~~~~~~~g~~~~~~~~~~~ 455 (460)
.+.-+..+.++++++
T Consensus 78 ----~~~~t~~~~~~~il~ 92 (92)
T PF13524_consen 78 ----LKRHTWEHRAEQILE 92 (92)
T ss_pred ----HHhCCHHHHHHHHHC
Confidence 367777777777753
No 141
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=96.03 E-value=0.27 Score=47.09 Aligned_cols=135 Identities=14% Similarity=0.019 Sum_probs=74.5
Q ss_pred CeEEE-EEeccccc--CCHHHHHHHHHHHHhCCCCEEEEECCCCCCCchhhccCchhHHhhhCCCceEEe--ccch-HHH
Q 012563 273 KSVIY-VSFGSVAA--INETEFLEIAWGLANSRVPFLWVVRPGLVDGVEWLEALPKGYLEMVDGRGYIVQ--WAPQ-QQV 346 (460)
Q Consensus 273 ~~~v~-vs~GS~~~--~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~vp~-~~l 346 (460)
++.|. +-.||... .+.+.+.++++.+.+.+.++++..++... ...-+.+.+.. .++.+.. -+.+ ..+
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~e------~~~~~~i~~~~-~~~~l~g~~sL~elaal 250 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEHE------EQRAKRLAEGF-PYVEVLPKLSLEQVARV 250 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHHH------HHHHHHHHccC-CcceecCCCCHHHHHHH
Confidence 34443 44444332 56778888888887667776655444320 11112222221 1222332 2333 558
Q ss_pred hccCCCcceeeccCchhhHHHHhhCCCeeecCcccchhhHHHHHHH-hh--ceeEeeCCccCHHHHHHHHHHHhc
Q 012563 347 LAHPAVGGFLTHSGWNSTLESICEGVPMICQPCLADQMVNARYVSH-VW--RVGLHLEGKLEKKEIETAIRRLMV 418 (460)
Q Consensus 347 L~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~-~l--G~G~~~~~~~~~~~l~~~i~~ll~ 418 (460)
+.++++ ||+. -.|.++=|.+.|+|.|++=-..|...++-+-.. .. -.+.++. +++++++.+++.++|+
T Consensus 251 i~~a~l--~I~n-DSGp~HlA~A~g~p~valfGpt~p~~~~p~~~~~~~~~~~~~cm~-~I~~e~V~~~~~~~l~ 321 (322)
T PRK10964 251 LAGAKA--VVSV-DTGLSHLTAALDRPNITLYGPTDPGLIGGYGKNQHACRSPGKSMA-DLSAETVFQKLETLIS 321 (322)
T ss_pred HHhCCE--EEec-CCcHHHHHHHhCCCEEEEECCCCcccccCCCCCceeecCCCcccc-cCCHHHHHHHHHHHhh
Confidence 999999 9997 458999999999999985222222111110000 00 0012233 6899999999988774
No 142
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.52 E-value=0.69 Score=43.24 Aligned_cols=101 Identities=15% Similarity=0.045 Sum_probs=65.0
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCceE-EeCCCCCCCCCCCCHHHHHHHHHHhcc
Q 012563 16 RVILFPLPFQGHINPMLQLGSILYSK--GFSITIIHTKFNSPNSCNYPHFDF-HSISDGLTDPSAEDSTTILITLNAKCM 92 (460)
Q Consensus 16 ~il~~~~~~~GHv~p~l~lA~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (460)
|||++-..+.|++.-+.++.++|+++ +-+|++++.+.........+.++- +.++... .....
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~p~id~v~~~~~~~---~~~~~------------ 65 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELMPEVDRVIVLPKKH---GKLGL------------ 65 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcCCccCEEEEcCCcc---cccch------------
Confidence 68999999999999999999999998 489999999655544443444432 3333111 00001
Q ss_pred hhHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH-HHhhcCCCeEE
Q 012563 93 VPFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH-VADEFKLPTII 140 (460)
Q Consensus 93 ~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~-~A~~lgiP~v~ 140 (460)
......+..+.+. ++|+++.-....... ++...+++...
T Consensus 66 ~~~~~~~~~l~~~---------~~D~vi~~~~~~~~~~~~~~~~~~~~~ 105 (279)
T cd03789 66 GARRRLARALRRR---------RYDLAIDLQGSLRSALLPFLAGAPRRI 105 (279)
T ss_pred HHHHHHHHHHhhc---------CCCEEEECCCccHHHHHHHHhCCCeEE
Confidence 1123344455443 799999876665555 66677776654
No 143
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=95.21 E-value=0.89 Score=43.18 Aligned_cols=58 Identities=16% Similarity=0.116 Sum_probs=41.1
Q ss_pred chHHHhccCCCcceeeccCchhhHHHHhhCCCeeecCcccchhh-H---HHHHHHhhceeEeeCC
Q 012563 342 PQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCLADQMV-N---ARYVSHVWRVGLHLEG 402 (460)
Q Consensus 342 p~~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~DQ~~-n---a~~v~~~lG~G~~~~~ 402 (460)
|+..+|..++. ++||=--.+=+.||+..|+|+.++|... +.. . .+.+++ .|+-..+..
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L~~-~g~~r~~~~ 282 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSLEE-RGAVRPFTG 282 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHHHH-CCCEEECCC
Confidence 57788999986 4455545577899999999999999976 322 1 245566 377766654
No 144
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=95.01 E-value=1.6 Score=44.10 Aligned_cols=104 Identities=14% Similarity=0.142 Sum_probs=70.8
Q ss_pred eccchHH---HhccCCCcceee---ccCc-hhhHHHHhhCCC----eeecCcccchhhHHHHHHHhhceeEeeCCccCHH
Q 012563 339 QWAPQQQ---VLAHPAVGGFLT---HSGW-NSTLESICEGVP----MICQPCLADQMVNARYVSHVWRVGLHLEGKLEKK 407 (460)
Q Consensus 339 ~~vp~~~---lL~~~~~~~~I~---HGG~-~s~~eal~~GvP----~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~ 407 (460)
..+++.+ +++.+++ |+. +=|. .+..||+++|+| +|+--+.+- +.. ++-|+.++. .+.+
T Consensus 342 ~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~----~~~----l~~gllVnP-~d~~ 410 (456)
T TIGR02400 342 RSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGA----AQE----LNGALLVNP-YDID 410 (456)
T ss_pred CCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCC----hHH----hCCcEEECC-CCHH
Confidence 4556644 6788888 876 3465 578899999999 666444332 222 234566664 6899
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 012563 408 EIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHILS 459 (460)
Q Consensus 408 ~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
+++++|.++++.+. ++.+++.+++.+.+. .-+..+-++++++.+.+
T Consensus 411 ~lA~aI~~aL~~~~-~er~~r~~~~~~~v~-----~~~~~~W~~~~l~~l~~ 456 (456)
T TIGR02400 411 GMADAIARALTMPL-EEREERHRAMMDKLR-----KNDVQRWREDFLSDLNS 456 (456)
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHHHHh-----hCCHHHHHHHHHHHhhC
Confidence 99999999998532 455666666666654 36788888888887754
No 145
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=94.86 E-value=0.037 Score=46.37 Aligned_cols=95 Identities=11% Similarity=0.072 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCCCCCCC-CCCCCceEEeCCCCCCCCCCCCHHHHHHHHHHhcchhHHHHHHHHhhcCCC
Q 012563 30 PMLQLGSILYSKGFSITIIHTKFNSPNS-CNYPHFDFHSISDGLTDPSAEDSTTILITLNAKCMVPFRNCLAKLVSNTNN 108 (460)
Q Consensus 30 p~l~lA~~L~~rGh~V~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 108 (460)
-+..|+++|.++||+|+++++....... ....++.+..++-..... .......+ ..+..+......
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------------~~~~~~l~~~~~ 72 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDEEEEDGVRVHRLPLPRRPW-PLRLLRFL------------RRLRRLLAARRE 72 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-SEEETTEEEEEE--S-SSS-GGGHCCHH------------HHHHHHCHHCT-
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCcccccccCCceEEeccCCccch-hhhhHHHH------------HHHHHHHhhhcc
Confidence 4678999999999999999975333321 223578887776221111 00011111 111222111111
Q ss_pred CCCCCCCceEEEEcCcchHHH--HHh-hcCCCeEEEeC
Q 012563 109 NNAQEDSVACLITDFLWQFTH--VAD-EFKLPTIILQT 143 (460)
Q Consensus 109 ~~~~~~~pDlvI~D~~~~~~~--~A~-~lgiP~v~~~~ 143 (460)
+||+|.+........ ++. ..++|+|....
T Consensus 73 ------~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 73 ------RPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp --------SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred ------CCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 899999887432222 555 88999998654
No 146
>PLN02939 transferase, transferring glycosyl groups
Probab=94.86 E-value=0.4 Score=51.80 Aligned_cols=113 Identities=12% Similarity=0.126 Sum_probs=68.8
Q ss_pred CCceEEeccchH---HHhccCCCcceeecc---C-chhhHHHHhhCCCeeecCccc--chhhH--HHHH-HHhhceeEee
Q 012563 333 GRGYIVQWAPQQ---QVLAHPAVGGFLTHS---G-WNSTLESICEGVPMICQPCLA--DQMVN--ARYV-SHVWRVGLHL 400 (460)
Q Consensus 333 ~~~~~~~~vp~~---~lL~~~~~~~~I~HG---G-~~s~~eal~~GvP~v~~P~~~--DQ~~n--a~~v-~~~lG~G~~~ 400 (460)
+++.+..+.+.. .+++.+++ ||.-. | -.+.+||+++|+|.|+....+ |-..+ ...+ ++. +-|..+
T Consensus 837 drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg-~NGfLf 913 (977)
T PLN02939 837 NNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVEL-RNGFTF 913 (977)
T ss_pred CeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCC-CceEEe
Confidence 567777777764 48888988 88642 2 358999999999999876543 32211 1111 121 557666
Q ss_pred CCccCHHHHHHHHHHHhc----cchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 012563 401 EGKLEKKEIETAIRRLMV----EAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHIL 458 (460)
Q Consensus 401 ~~~~~~~~l~~~i~~ll~----~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
+. -+++.|.++|.++++ | ...++. +++ +++...-+-+..+++..+..+
T Consensus 914 ~~-~D~eaLa~AL~rAL~~~~~d---pe~~~~---L~~---~am~~dFSWe~~A~qYeeLY~ 965 (977)
T PLN02939 914 LT-PDEQGLNSALERAFNYYKRK---PEVWKQ---LVQ---KDMNIDFSWDSSASQYEELYQ 965 (977)
T ss_pred cC-CCHHHHHHHHHHHHHHhccC---HHHHHH---HHH---HHHHhcCCHHHHHHHHHHHHH
Confidence 64 688999999988875 3 222222 221 222345566666666665544
No 147
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=94.53 E-value=0.47 Score=40.56 Aligned_cols=93 Identities=12% Similarity=0.103 Sum_probs=54.8
Q ss_pred hCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCCCCC-HHHHHHHHHHhcchhHHHHHHHHhhcCCCCCCCCCCceE
Q 012563 40 SKGFSITIIHTKFNSPNSCNYPHFDFHSISDGLTDPSAED-STTILITLNAKCMVPFRNCLAKLVSNTNNNNAQEDSVAC 118 (460)
Q Consensus 40 ~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDl 118 (460)
++||+|++++.. ...... +|++.+.+...-....... ....++....... .+...+.+|++.+- .||+
T Consensus 1 q~gh~v~fl~~~-~~~~~~--~GV~~~~y~~~~~~~~~~~~~~~~~e~~~~rg~-av~~a~~~L~~~Gf-------~PDv 69 (171)
T PF12000_consen 1 QRGHEVVFLTER-KRPPIP--PGVRVVRYRPPRGPTPGTHPYVRDFEAAVLRGQ-AVARAARQLRAQGF-------VPDV 69 (171)
T ss_pred CCCCEEEEEecC-CCCCCC--CCcEEEEeCCCCCCCCCCCcccccHHHHHHHHH-HHHHHHHHHHHcCC-------CCCE
Confidence 479999999963 222222 5788777753111111111 1222222222222 24456666666532 7999
Q ss_pred EEEcCcchHHH-HHhhc-CCCeEEEeC
Q 012563 119 LITDFLWQFTH-VADEF-KLPTIILQT 143 (460)
Q Consensus 119 vI~D~~~~~~~-~A~~l-giP~v~~~~ 143 (460)
||....+-.+. +-+.+ ++|.+.+.-
T Consensus 70 I~~H~GWGe~Lflkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 70 IIAHPGWGETLFLKDVFPDAPLIGYFE 96 (171)
T ss_pred EEEcCCcchhhhHHHhCCCCcEEEEEE
Confidence 99998777677 99999 999988544
No 148
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=93.31 E-value=0.98 Score=38.23 Aligned_cols=31 Identities=19% Similarity=0.374 Sum_probs=24.1
Q ss_pred CCCChHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012563 24 FQGHINPMLQLGSILYSKGFSITIIHTKFNS 54 (460)
Q Consensus 24 ~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~ 54 (460)
..|--.-+..|+++|+++||+|+++++....
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~ 41 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGVKD 41 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-TT
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCCCc
Confidence 4466677899999999999999999885333
No 149
>PRK14099 glycogen synthase; Provisional
Probab=93.05 E-value=2 Score=43.85 Aligned_cols=115 Identities=13% Similarity=0.170 Sum_probs=61.5
Q ss_pred CCCc-eEEeccchH-HHh-ccCCCcceee---ccCc-hhhHHHHhhCCCeeecCccc--chhhHHHHH-HHh-hceeEee
Q 012563 332 DGRG-YIVQWAPQQ-QVL-AHPAVGGFLT---HSGW-NSTLESICEGVPMICQPCLA--DQMVNARYV-SHV-WRVGLHL 400 (460)
Q Consensus 332 ~~~~-~~~~~vp~~-~lL-~~~~~~~~I~---HGG~-~s~~eal~~GvP~v~~P~~~--DQ~~na~~v-~~~-lG~G~~~ 400 (460)
++++ .+..|-... .++ ..+++ |+. +=|. .+.+||+++|+|.|+....+ |--...... +.. -+-|..+
T Consensus 349 ~~~v~~~~G~~~~l~~~~~a~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~ 426 (485)
T PRK14099 349 PGQIGVVIGYDEALAHLIQAGADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQF 426 (485)
T ss_pred CCCEEEEeCCCHHHHHHHHhcCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEe
Confidence 4444 344663332 233 35676 875 3444 47789999997766654322 321111000 000 0467777
Q ss_pred CCccCHHHHHHHHHH---HhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 012563 401 EGKLEKKEIETAIRR---LMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHIL 458 (460)
Q Consensus 401 ~~~~~~~~l~~~i~~---ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
+. -++++|.++|.+ +++| +..++ ++++.. ..+.-|-++.+++.++..+
T Consensus 427 ~~-~d~~~La~ai~~a~~l~~d---~~~~~---~l~~~~---~~~~fSw~~~a~~y~~lY~ 477 (485)
T PRK14099 427 SP-VTADALAAALRKTAALFAD---PVAWR---RLQRNG---MTTDVSWRNPAQHYAALYR 477 (485)
T ss_pred CC-CCHHHHHHHHHHHHHHhcC---HHHHH---HHHHHh---hhhcCChHHHHHHHHHHHH
Confidence 64 689999999997 5666 33222 222221 1244566666676666554
No 150
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.77 E-value=0.44 Score=43.90 Aligned_cols=85 Identities=19% Similarity=0.186 Sum_probs=57.2
Q ss_pred eccchHHHhccCCCcceeeccCchhhHHHHhhCCCeeecCcccchhh--HHHHHHHhhceeEeeCCccCHHHHHHHHHHH
Q 012563 339 QWAPQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCLADQMV--NARYVSHVWRVGLHLEGKLEKKEIETAIRRL 416 (460)
Q Consensus 339 ~~vp~~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~DQ~~--na~~v~~~lG~G~~~~~~~~~~~l~~~i~~l 416 (460)
.|-...++|.++++ .|--.| ..+-+++--|+|+|.+|-.+-|+. -|++=.+-+|..+.+-. ..+..-..+.+++
T Consensus 301 sqqsfadiLH~ada--algmAG-TAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~-~~aq~a~~~~q~l 376 (412)
T COG4370 301 SQQSFADILHAADA--ALGMAG-TATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR-PEAQAAAQAVQEL 376 (412)
T ss_pred eHHHHHHHHHHHHH--HHHhcc-chHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC-CchhhHHHHHHHH
Confidence 56666677777776 554444 234456788999999999999954 56666665688877754 3334444445559
Q ss_pred hccchHHHHHHHHH
Q 012563 417 MVEAEGQEMRERIT 430 (460)
Q Consensus 417 l~~~~~~~~~~~a~ 430 (460)
+.| .++.++++
T Consensus 377 l~d---p~r~~air 387 (412)
T COG4370 377 LGD---PQRLTAIR 387 (412)
T ss_pred hcC---hHHHHHHH
Confidence 999 67766666
No 151
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.66 E-value=13 Score=35.46 Aligned_cols=60 Identities=20% Similarity=0.211 Sum_probs=49.5
Q ss_pred CCCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC--CCCCCCCCCCceEEeCCC
Q 012563 11 PRNGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKF--NSPNSCNYPHFDFHSISD 70 (460)
Q Consensus 11 ~~~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~--~~~~~~~~~~~~~~~~~~ 70 (460)
..+|.|+.++-.|-.||-=.|.-=|..|++.|++|.+++--. ..+..-+.+.++++.++.
T Consensus 9 ~~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~hprI~ih~m~~ 70 (444)
T KOG2941|consen 9 KSKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELLNHPRIRIHGMPN 70 (444)
T ss_pred ccccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHhcCCceEEEeCCC
Confidence 356788999999999999999999999999999999998632 233344678999999983
No 152
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=91.64 E-value=4.4 Score=41.01 Aligned_cols=103 Identities=18% Similarity=0.201 Sum_probs=61.7
Q ss_pred EeccchHH---HhccCCCcceee---ccCc-hhhHHHHhhCCC----eeecCcccchhhHHHHHHHhhceeEeeCCccCH
Q 012563 338 VQWAPQQQ---VLAHPAVGGFLT---HSGW-NSTLESICEGVP----MICQPCLADQMVNARYVSHVWRVGLHLEGKLEK 406 (460)
Q Consensus 338 ~~~vp~~~---lL~~~~~~~~I~---HGG~-~s~~eal~~GvP----~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~ 406 (460)
..++++.+ ++..+++ ||. +-|. .++.||+++|+| +|+--..+ -+. . ..-|..++. .+.
T Consensus 346 ~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G----~~~---~-~~~g~lv~p-~d~ 414 (460)
T cd03788 346 YRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAG----AAE---E-LSGALLVNP-YDI 414 (460)
T ss_pred eCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEecccc----chh---h-cCCCEEECC-CCH
Confidence 35677654 6888888 774 3455 477999999999 54432221 111 1 123555553 689
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012563 407 KEIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHI 457 (460)
Q Consensus 407 ~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 457 (460)
++++++|.+++++.. +..+++.++..+.+. .-+...-++++++.+
T Consensus 415 ~~la~ai~~~l~~~~-~e~~~~~~~~~~~v~-----~~~~~~w~~~~l~~l 459 (460)
T cd03788 415 DEVADAIHRALTMPL-EERRERHRKLREYVR-----THDVQAWANSFLDDL 459 (460)
T ss_pred HHHHHHHHHHHcCCH-HHHHHHHHHHHHHHH-----hCCHHHHHHHHHHhh
Confidence 999999999998631 122223333333332 356777777777654
No 153
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=91.24 E-value=0.48 Score=40.63 Aligned_cols=108 Identities=17% Similarity=0.080 Sum_probs=57.7
Q ss_pred CCCCCChHHHHHHHHHH-HhC-CCeEEEEeCCCCCCCC-----CC--CCCceEEeCCCCCCCCCCCCHHHHHHHHHHhcc
Q 012563 22 LPFQGHINPMLQLGSIL-YSK-GFSITIIHTKFNSPNS-----CN--YPHFDFHSISDGLTDPSAEDSTTILITLNAKCM 92 (460)
Q Consensus 22 ~~~~GHv~p~l~lA~~L-~~r-Gh~V~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (460)
.++.||+.=|+.|.+.+ .++ .++..+++........ .+ ....++..+|...... .. .......+...
T Consensus 5 ~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~~~~~~~~~~r~r~v~-q~-~~~~~~~~l~~-- 80 (170)
T PF08660_consen 5 LGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSSKRHKILEIPRAREVG-QS-YLTSIFTTLRA-- 80 (170)
T ss_pred EcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhccccceeeccceEEEec-hh-hHhhHHHHHHH--
Confidence 48899999999999999 333 5666666654332221 00 0111344444221111 00 11111111111
Q ss_pred hhHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH---HHhhc------CCCeEEEeCc
Q 012563 93 VPFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH---VADEF------KLPTIILQTH 144 (460)
Q Consensus 93 ~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~---~A~~l------giP~v~~~~~ 144 (460)
+...+.-+.+. +||+||+..-..+.+ +|..+ |.+.|.+-+.
T Consensus 81 --~~~~~~il~r~---------rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~ 130 (170)
T PF08660_consen 81 --FLQSLRILRRE---------RPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESF 130 (170)
T ss_pred --HHHHHHHHHHh---------CCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEee
Confidence 22233333333 899999998665555 88888 8999886553
No 154
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=90.55 E-value=15 Score=34.34 Aligned_cols=79 Identities=24% Similarity=0.385 Sum_probs=53.8
Q ss_pred CCceEEeccc---hHHHhccCCCcceeec---cCch-hhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCccC
Q 012563 333 GRGYIVQWAP---QQQVLAHPAVGGFLTH---SGWN-STLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLE 405 (460)
Q Consensus 333 ~~~~~~~~vp---~~~lL~~~~~~~~I~H---GG~~-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~ 405 (460)
+++.+..+++ ...++..+++ ++.- .|.| ++.||+++|+|+|. .+.......+.+ -+.|. +....+
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~----~~~~~~~e~~~~-~~~g~-~~~~~~ 328 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIA----SDVGGIPEVVED-GETGL-LVPPGD 328 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEE----CCCCChHHHhcC-CCceE-ecCCCC
Confidence 5567778888 2446777777 7766 3554 46999999999977 444444444445 23466 332237
Q ss_pred HHHHHHHHHHHhcc
Q 012563 406 KKEIETAIRRLMVE 419 (460)
Q Consensus 406 ~~~l~~~i~~ll~~ 419 (460)
.+.+.+++..++++
T Consensus 329 ~~~~~~~i~~~~~~ 342 (381)
T COG0438 329 VEELADALEQLLED 342 (381)
T ss_pred HHHHHHHHHHHhcC
Confidence 89999999999988
No 155
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=88.23 E-value=10 Score=34.84 Aligned_cols=40 Identities=10% Similarity=0.124 Sum_probs=28.6
Q ss_pred CCCcEEEEEcCCCCCChH-HHHHHHHHHHhCCCeEEEEeCCCCC
Q 012563 12 RNGRRVILFPLPFQGHIN-PMLQLGSILYSKGFSITIIHTKFNS 54 (460)
Q Consensus 12 ~~~~~il~~~~~~~GHv~-p~l~lA~~L~~rGh~V~~~~~~~~~ 54 (460)
.++||||+..=- |--. -+.+|+++|.+.| +|+++.+....
T Consensus 3 ~~~M~ILltNDD--Gi~a~Gi~aL~~~l~~~g-~V~VvAP~~~~ 43 (257)
T PRK13932 3 DKKPHILVCNDD--GIEGEGIHVLAASMKKIG-RVTVVAPAEPH 43 (257)
T ss_pred CCCCEEEEECCC--CCCCHHHHHHHHHHHhCC-CEEEEcCCCCC
Confidence 357999887633 3333 4778899998888 79999986444
No 156
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=87.19 E-value=1.3 Score=36.35 Aligned_cols=57 Identities=16% Similarity=0.063 Sum_probs=44.7
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCCCCC---CCCCCceEEeCC
Q 012563 13 NGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNSPNS---CNYPHFDFHSIS 69 (460)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~~---~~~~~~~~~~~~ 69 (460)
++.+|++.+.++-+|-.-..-++..|.++|++|++++..-..+.. ....+.+++.++
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS 61 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVS 61 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEc
Confidence 688999999999999999999999999999999999985443332 112345555555
No 157
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=86.96 E-value=15 Score=39.96 Aligned_cols=99 Identities=14% Similarity=0.129 Sum_probs=61.9
Q ss_pred HHHhccCCCcceeec---cCch-hhHHHHhhCCC---eeecCcccchhhHHHHHHHhhc-eeEeeCCccCHHHHHHHHHH
Q 012563 344 QQVLAHPAVGGFLTH---SGWN-STLESICEGVP---MICQPCLADQMVNARYVSHVWR-VGLHLEGKLEKKEIETAIRR 415 (460)
Q Consensus 344 ~~lL~~~~~~~~I~H---GG~~-s~~eal~~GvP---~v~~P~~~DQ~~na~~v~~~lG-~G~~~~~~~~~~~l~~~i~~ 415 (460)
..+++.+++ |+.- -|+| +..|++++|+| +++++ |-...+.. +| -|+.+.. .+.++++++|.+
T Consensus 370 ~aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlS---e~~G~~~~----l~~~allVnP-~D~~~lA~AI~~ 439 (797)
T PLN03063 370 CALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLS---EFAGAGQS----LGAGALLVNP-WNITEVSSAIKE 439 (797)
T ss_pred HHHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEee---CCcCchhh----hcCCeEEECC-CCHHHHHHHHHH
Confidence 357888888 8754 4776 67799999999 33333 22222221 23 4677764 799999999999
Q ss_pred HhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 012563 416 LMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHIL 458 (460)
Q Consensus 416 ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
+|+.+. +..+++.+++.+..+ .-+..+-.+.+++.++
T Consensus 440 aL~m~~-~er~~r~~~~~~~v~-----~~~~~~Wa~~fl~~l~ 476 (797)
T PLN03063 440 ALNMSD-EERETRHRHNFQYVK-----THSAQKWADDFMSELN 476 (797)
T ss_pred HHhCCH-HHHHHHHHHHHHhhh-----hCCHHHHHHHHHHHHH
Confidence 998321 344445555555554 3345566666666554
No 158
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=86.77 E-value=2.2 Score=43.73 Aligned_cols=92 Identities=16% Similarity=0.182 Sum_probs=62.5
Q ss_pred CCceEEeccc--h-HHHhccCCCcceeecc---CchhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCccCH
Q 012563 333 GRGYIVQWAP--Q-QQVLAHPAVGGFLTHS---GWNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEK 406 (460)
Q Consensus 333 ~~~~~~~~vp--~-~~lL~~~~~~~~I~HG---G~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~ 406 (460)
.++.+..+.+ + ..++..+.+ +|.=+ |.+|..||+.+|+|+| .......|++. .=|..+ -+.
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~-~NG~li---~d~ 475 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHN-KNGYII---DDI 475 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcC-CCcEEe---CCH
Confidence 4566778777 3 447777766 88766 6779999999999999 22234455552 445555 378
Q ss_pred HHHHHHHHHHhccch-HHHHHHHHHHHHHHHH
Q 012563 407 KEIETAIRRLMVEAE-GQEMRERITCLKKNVD 437 (460)
Q Consensus 407 ~~l~~~i~~ll~~~~-~~~~~~~a~~l~~~~~ 437 (460)
.+|.++|..+|.+.. -+.+...+-+.++...
T Consensus 476 ~~l~~al~~~L~~~~~wn~~~~~sy~~~~~yS 507 (519)
T TIGR03713 476 SELLKALDYYLDNLKNWNYSLAYSIKLIDDYS 507 (519)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999842 2445555555554443
No 159
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=86.53 E-value=22 Score=32.50 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=29.1
Q ss_pred eccchHHHhccCCCcceeeccCc-hhhHHHHhhCCCeee
Q 012563 339 QWAPQQQVLAHPAVGGFLTHSGW-NSTLESICEGVPMIC 376 (460)
Q Consensus 339 ~~vp~~~lL~~~~~~~~I~HGG~-~s~~eal~~GvP~v~ 376 (460)
++=|+.+.|..++. +|.-... |-.+||++.|+|+-+
T Consensus 234 g~NPY~~~La~Ady--ii~TaDSinM~sEAasTgkPv~~ 270 (329)
T COG3660 234 GYNPYIDMLAAADY--IISTADSINMCSEAASTGKPVFI 270 (329)
T ss_pred CCCchHHHHhhcce--EEEecchhhhhHHHhccCCCeEE
Confidence 34588899998887 7766664 777899999999877
No 160
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=86.37 E-value=13 Score=35.40 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=62.1
Q ss_pred CCceE-Eeccch---HHHhccCCCcceeec--cCchhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCC-ccC
Q 012563 333 GRGYI-VQWAPQ---QQVLAHPAVGGFLTH--SGWNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEG-KLE 405 (460)
Q Consensus 333 ~~~~~-~~~vp~---~~lL~~~~~~~~I~H--GG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~-~~~ 405 (460)
+++.+ .++.|. .++|..|+++.|.|. =|.|+++-.|..|+|+++ ..+----+.+.+ .|+-+-... .++
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L----~~~np~~~~l~~-~~ipVlf~~d~L~ 319 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFL----SRDNPFWQDLKE-QGIPVLFYGDELD 319 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEE----ecCChHHHHHHh-CCCeEEeccccCC
Confidence 45654 478774 569999999888775 589999999999999998 444334455566 387776665 899
Q ss_pred HHHHHHHHHHHhc
Q 012563 406 KKEIETAIRRLMV 418 (460)
Q Consensus 406 ~~~l~~~i~~ll~ 418 (460)
...+.++=+++.+
T Consensus 320 ~~~v~ea~rql~~ 332 (360)
T PF07429_consen 320 EALVREAQRQLAN 332 (360)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999888875
No 161
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=84.18 E-value=21 Score=33.54 Aligned_cols=135 Identities=16% Similarity=0.200 Sum_probs=77.6
Q ss_pred EEEEecccccCCHHHHHHHHHHHHh---CCCCEEEEECCCCCCCchhhccCchhHHhhhC-CCceE-Eeccc---hHHHh
Q 012563 276 IYVSFGSVAAINETEFLEIAWGLAN---SRVPFLWVVRPGLVDGVEWLEALPKGYLEMVD-GRGYI-VQWAP---QQQVL 347 (460)
Q Consensus 276 v~vs~GS~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~vp---~~~lL 347 (460)
+-|-.|.++..+ +...++++++.+ .+.++++-.+....+. +....+...-.+-.+ +++.+ .++.| +.++|
T Consensus 147 ~tIlvGNSgd~S-N~Hie~L~~l~~~~~~~v~ii~PlsYp~gn~-~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL 224 (322)
T PRK02797 147 MTILVGNSGDRS-NRHIEALRALHQQFGDNVKIIVPMGYPANNQ-AYIEEVRQAGLALFGAENFQILTEKLPFDDYLALL 224 (322)
T ss_pred eEEEEeCCCCCc-ccHHHHHHHHHHHhCCCeEEEEECCcCCCCH-HHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHHH
Confidence 334456655533 333344444432 2346666666531111 111111111112223 56665 47776 46699
Q ss_pred ccCCCcceeec--cCchhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCC-ccCHHHHHHHHHHHh
Q 012563 348 AHPAVGGFLTH--SGWNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEG-KLEKKEIETAIRRLM 417 (460)
Q Consensus 348 ~~~~~~~~I~H--GG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~-~~~~~~l~~~i~~ll 417 (460)
+.|+++.|+|+ =|.||++-.+..|+|+++-- +=++|.. +.+ .|+-+-.+. .++...+.++=+++.
T Consensus 225 ~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r---~n~fwqd-l~e-~gv~Vlf~~d~L~~~~v~e~~rql~ 292 (322)
T PRK02797 225 RQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSR---DNPFWQD-LTE-QGLPVLFTGDDLDEDIVREAQRQLA 292 (322)
T ss_pred HhCCEEEEeechhhHHhHHHHHHHCCCcEEEec---CCchHHH-HHh-CCCeEEecCCcccHHHHHHHHHHHH
Confidence 99999988886 58999999999999999832 2234433 334 377775555 788888877755443
No 162
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=83.78 E-value=3.4 Score=34.77 Aligned_cols=57 Identities=14% Similarity=0.178 Sum_probs=44.3
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCC
Q 012563 12 RNGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNSPNSCNYPHFDFHSIS 69 (460)
Q Consensus 12 ~~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~ 69 (460)
...|+|++.-.|+.|-..-++.+++.|.++|+.|-=+-++..-.. ...-|++.+.+.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~g-GkR~GF~Ivdl~ 59 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREG-GKRIGFKIVDLA 59 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecC-CeEeeeEEEEcc
Confidence 457999999999999999999999999999999876665322211 123578888776
No 163
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=83.01 E-value=20 Score=38.73 Aligned_cols=109 Identities=17% Similarity=0.185 Sum_probs=64.7
Q ss_pred EEeccchHH---HhccCCCcceeec---cCc-hhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCccCHHHH
Q 012563 337 IVQWAPQQQ---VLAHPAVGGFLTH---SGW-NSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEKKEI 409 (460)
Q Consensus 337 ~~~~vp~~~---lL~~~~~~~~I~H---GG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~l 409 (460)
+.+++++.+ +++.+++ |+.- -|+ .+..|++++|+|-...|+..+--.-+ .+ +.-|+.++. .+.+++
T Consensus 346 ~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~---~~-l~~~llv~P-~d~~~l 418 (726)
T PRK14501 346 FYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAA---AE-LAEALLVNP-NDIEGI 418 (726)
T ss_pred EeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchh---HH-hCcCeEECC-CCHHHH
Confidence 346777654 7778887 7764 354 58899999977532222222211111 12 233666664 789999
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 012563 410 ETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHIL 458 (460)
Q Consensus 410 ~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
+++|.++++..+ ++.+++.+++.+.++ .-+...-++++++.+.
T Consensus 419 a~ai~~~l~~~~-~e~~~r~~~~~~~v~-----~~~~~~w~~~~l~~l~ 461 (726)
T PRK14501 419 AAAIKRALEMPE-EEQRERMQAMQERLR-----RYDVHKWASDFLDELR 461 (726)
T ss_pred HHHHHHHHcCCH-HHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHH
Confidence 999999998521 234444444444443 3456666777666554
No 164
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=82.80 E-value=17 Score=33.17 Aligned_cols=39 Identities=21% Similarity=0.324 Sum_probs=26.3
Q ss_pred cEEEEEcCCCCCChHH-HHHHHHHHHhCCCeEEEEeCCCCCCC
Q 012563 15 RRVILFPLPFQGHINP-MLQLGSILYSKGFSITIIHTKFNSPN 56 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p-~l~lA~~L~~rGh~V~~~~~~~~~~~ 56 (460)
||||+.- -.|=..| +.+|++.|. .+++|+++.++.+..-
T Consensus 1 mrILlTN--DDGi~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg 40 (252)
T COG0496 1 MRILLTN--DDGIHAPGIRALARALR-EGADVTVVAPDREQSG 40 (252)
T ss_pred CeEEEec--CCccCCHHHHHHHHHHh-hCCCEEEEccCCCCcc
Confidence 5666554 2333333 667888888 9999999999755433
No 165
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=82.53 E-value=4.4 Score=41.63 Aligned_cols=75 Identities=8% Similarity=0.098 Sum_probs=47.6
Q ss_pred chHHHhccCCCcceee---ccCc-hhhHHHHhhCCCeeecCccc-chhhHHHHHHHhhceeEeeCC------ccCHHHHH
Q 012563 342 PQQQVLAHPAVGGFLT---HSGW-NSTLESICEGVPMICQPCLA-DQMVNARYVSHVWRVGLHLEG------KLEKKEIE 410 (460)
Q Consensus 342 p~~~lL~~~~~~~~I~---HGG~-~s~~eal~~GvP~v~~P~~~-DQ~~na~~v~~~lG~G~~~~~------~~~~~~l~ 410 (460)
+..+++..|++ +|. +=|+ -+.+||+++|+|+|.-...+ ..... ..+...-..|+.+.. ..+.++|.
T Consensus 467 ~y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~-E~v~~~~~~gi~V~~r~~~~~~e~v~~La 543 (590)
T cd03793 467 DYEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME-EHIEDPESYGIYIVDRRFKSPDESVQQLT 543 (590)
T ss_pred chHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH-HHhccCCCceEEEecCCccchHHHHHHHH
Confidence 46678888998 665 3454 48999999999999966532 12111 122210014555542 34678888
Q ss_pred HHHHHHhcc
Q 012563 411 TAIRRLMVE 419 (460)
Q Consensus 411 ~~i~~ll~~ 419 (460)
+++.++++.
T Consensus 544 ~~m~~~~~~ 552 (590)
T cd03793 544 QYMYEFCQL 552 (590)
T ss_pred HHHHHHhCC
Confidence 888888865
No 166
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=82.18 E-value=15 Score=34.28 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=37.6
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 012563 14 GRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNSPN 56 (460)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~ 56 (460)
.-+|+|.-.|+-|--.-.=.|.++|.++||+|-++.-++..+.
T Consensus 51 a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~ 93 (323)
T COG1703 51 AHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPF 93 (323)
T ss_pred CcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCC
Confidence 4589999999999999999999999999999999997655443
No 167
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=82.00 E-value=8.8 Score=35.32 Aligned_cols=33 Identities=18% Similarity=0.131 Sum_probs=24.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKF 52 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~ 52 (460)
|+|+++.. .|. ...|++.|.++||+|+..+...
T Consensus 1 m~ILvlGG--T~e---gr~la~~L~~~g~~v~~s~~t~ 33 (256)
T TIGR00715 1 MTVLLMGG--TVD---SRAIAKGLIAQGIEILVTVTTS 33 (256)
T ss_pred CeEEEEec--hHH---HHHHHHHHHhCCCeEEEEEccC
Confidence 67777653 232 6789999999999999887743
No 168
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=81.83 E-value=23 Score=35.52 Aligned_cols=132 Identities=9% Similarity=0.102 Sum_probs=79.9
Q ss_pred CCeEEEEEecccccCCHHHHHHHHHHHHhCC-CCEEEEECCCCCCCchhhccCchhHH--hhhCCCceEE-eccc-h-HH
Q 012563 272 PKSVIYVSFGSVAAINETEFLEIAWGLANSR-VPFLWVVRPGLVDGVEWLEALPKGYL--EMVDGRGYIV-QWAP-Q-QQ 345 (460)
Q Consensus 272 ~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~vp-~-~~ 345 (460)
...++.+| ....+..+....++++ ..+=+..+.. ..+.+. ++. +|+.+. .+.+ . .+
T Consensus 282 ~~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~te----------~s~kL~~L~~y-~nvvly~~~~~~~l~~ 343 (438)
T TIGR02919 282 RKQALILT-------NSDQIEHLEEIVQALPDYHFHIAALTE----------MSSKLMSLDKY-DNVKLYPNITTQKIQE 343 (438)
T ss_pred cccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecCc----------ccHHHHHHHhc-CCcEEECCcChHHHHH
Confidence 44566665 2455666666666554 4443322221 112221 233 566655 6677 3 66
Q ss_pred HhccCCCcceeeccC--chhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCCccCHHHHHHHHHHHhccchHH
Q 012563 346 VLAHPAVGGFLTHSG--WNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEKKEIETAIRRLMVEAEGQ 423 (460)
Q Consensus 346 lL~~~~~~~~I~HGG--~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~l~~~i~~ll~~~~~~ 423 (460)
++..|++=+-|+||+ ..++.||+.+|+|++..=...... ..+.. |-.+. .-+.+++.++|.++|++. +
T Consensus 344 ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~---~~i~~----g~l~~-~~~~~~m~~~i~~lL~d~--~ 413 (438)
T TIGR02919 344 LYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNR---DFIAS----ENIFE-HNEVDQLISKLKDLLNDP--N 413 (438)
T ss_pred HHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCc---ccccC----Cceec-CCCHHHHHHHHHHHhcCH--H
Confidence 999999988889977 479999999999999954432211 11222 33343 357899999999999982 2
Q ss_pred HHHHHHHH
Q 012563 424 EMRERITC 431 (460)
Q Consensus 424 ~~~~~a~~ 431 (460)
.++++..+
T Consensus 414 ~~~~~~~~ 421 (438)
T TIGR02919 414 QFRELLEQ 421 (438)
T ss_pred HHHHHHHH
Confidence 44444433
No 169
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=81.27 E-value=3.9 Score=29.97 Aligned_cols=36 Identities=17% Similarity=0.325 Sum_probs=32.5
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEe
Q 012563 14 GRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIH 49 (460)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~ 49 (460)
..-++++.++...|...+..+|+.|+++|+.|...=
T Consensus 15 ~k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D 50 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYD 50 (79)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 478999999999999999999999999999998654
No 170
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=81.20 E-value=27 Score=31.86 Aligned_cols=37 Identities=16% Similarity=0.182 Sum_probs=25.8
Q ss_pred cEEEEEcCCCCCChH-HHHHHHHHHHhCCCeEEEEeCCCCC
Q 012563 15 RRVILFPLPFQGHIN-PMLQLGSILYSKGFSITIIHTKFNS 54 (460)
Q Consensus 15 ~~il~~~~~~~GHv~-p~l~lA~~L~~rGh~V~~~~~~~~~ 54 (460)
||||+.- --|--. -+.+|+++|.+.| +|+++.+....
T Consensus 1 M~ILltN--DDGi~a~Gi~aL~~~l~~~g-~V~VvAP~~~~ 38 (244)
T TIGR00087 1 MKILLTN--DDGIHSPGIRALYQALKELG-EVTVVAPARQR 38 (244)
T ss_pred CeEEEEC--CCCCCCHhHHHHHHHHHhCC-CEEEEeCCCCc
Confidence 5666554 333333 3778999999888 89999986444
No 171
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=81.14 E-value=2.4 Score=33.75 Aligned_cols=36 Identities=17% Similarity=0.204 Sum_probs=33.2
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 16 RVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 16 ~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
||++.+.++-.|.....-++..|.++|++|++....
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~ 36 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVD 36 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCC
Confidence 589999999999999999999999999999888764
No 172
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=81.04 E-value=3 Score=33.90 Aligned_cols=36 Identities=14% Similarity=0.161 Sum_probs=30.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
|||++.-.|+.+-+. ...+.+.|.++|++|.++.++
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~ 36 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSP 36 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECC
Confidence 688888888877777 999999999999999999985
No 173
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=80.17 E-value=12 Score=34.73 Aligned_cols=41 Identities=20% Similarity=0.204 Sum_probs=34.0
Q ss_pred eEEeccchHHHhccCCCcceeeccCchhhHHHHhhCCCeeecCc
Q 012563 336 YIVQWAPQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPC 379 (460)
Q Consensus 336 ~~~~~vp~~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~ 379 (460)
.+.+-++-.+++.+++. +||-.+ ++-.||+.+|+|++++..
T Consensus 186 ~~~~~~~~~~Ll~~s~~--VvtinS-tvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 186 IIDDDVNLYELLEQSDA--VVTINS-TVGLEALLHGKPVIVFGR 226 (269)
T ss_pred EECCCCCHHHHHHhCCE--EEEECC-HHHHHHHHcCCceEEecC
Confidence 34466788899999998 888865 588999999999999654
No 174
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=79.92 E-value=3.1 Score=33.18 Aligned_cols=37 Identities=8% Similarity=0.090 Sum_probs=25.4
Q ss_pred cEEEEEcCCCCC---ChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 15 RRVILFPLPFQG---HINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 15 ~~il~~~~~~~G---Hv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
|||+|+.-|-.+ .-.-..+|+.+-.+|||+|.++...
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~ 40 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPG 40 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GG
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcC
Confidence 788888876443 2345788999999999999999974
No 175
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=78.95 E-value=40 Score=30.89 Aligned_cols=38 Identities=16% Similarity=0.110 Sum_probs=25.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNS 54 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~ 54 (460)
||||+.-==+. |---+.+|+++|.+. |+|+++.+....
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~q 38 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRER 38 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCC
Confidence 56666543222 233478899999988 799999986444
No 176
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=78.46 E-value=44 Score=30.87 Aligned_cols=38 Identities=8% Similarity=0.072 Sum_probs=26.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNS 54 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~ 54 (460)
||||+..=-+. |---+.+|++.|.+.| +|+++.+....
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~eq 38 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETPK 38 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCCC
Confidence 56666553333 3345788999998887 79999886444
No 177
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=77.15 E-value=3.8 Score=35.67 Aligned_cols=53 Identities=21% Similarity=0.305 Sum_probs=30.2
Q ss_pred CcEEEEEcCCCCCChH------------HHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCC
Q 012563 14 GRRVILFPLPFQGHIN------------PMLQLGSILYSKGFSITIIHTKFNSPNSCNYPHFDFHSIS 69 (460)
Q Consensus 14 ~~~il~~~~~~~GHv~------------p~l~lA~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~ 69 (460)
++||++...|+.=.+. ....||+++..+|++|+++..+...+. ..+++.+.+.
T Consensus 3 gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~---p~~~~~i~v~ 67 (185)
T PF04127_consen 3 GKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPP---PPGVKVIRVE 67 (185)
T ss_dssp T-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS-------TTEEEEE-S
T ss_pred CCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccc---cccceEEEec
Confidence 4566666555544443 367899999999999999999632211 2356655544
No 178
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=76.72 E-value=52 Score=30.18 Aligned_cols=38 Identities=5% Similarity=0.001 Sum_probs=25.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNS 54 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~ 54 (460)
||||+..=-+. |---+.+|+++|.+ +|+|+++.+....
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~q 38 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKER 38 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCC
Confidence 66766653333 22337788888864 6899999986444
No 179
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=75.69 E-value=5.8 Score=34.84 Aligned_cols=41 Identities=12% Similarity=0.126 Sum_probs=30.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNSPN 56 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~ 56 (460)
||||+..=-+. +---+..|+++|.+.||+|+++.+.....-
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg 41 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSG 41 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTT
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcC
Confidence 78888775555 445588999999878899999999755543
No 180
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=74.40 E-value=2.9 Score=40.86 Aligned_cols=110 Identities=15% Similarity=0.181 Sum_probs=64.4
Q ss_pred CCceEE-eccchHHHhccCCCcceeeccCchhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeC----C--ccC
Q 012563 333 GRGYIV-QWAPQQQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLE----G--KLE 405 (460)
Q Consensus 333 ~~~~~~-~~vp~~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~----~--~~~ 405 (460)
+++..+ +..+-.++|..+++ +||=-. ..+.|.+..++|+|......|.... ++ |.-...+ + --+
T Consensus 252 ~~i~~~~~~~~~~~ll~~aDi--LITDyS-Si~fD~~~l~KPiify~~D~~~Y~~-----~r-g~~~~~~~~~pg~~~~~ 322 (369)
T PF04464_consen 252 SNIIFVSDNEDIYDLLAAADI--LITDYS-SIIFDFLLLNKPIIFYQPDLEEYEK-----ER-GFYFDYEEDLPGPIVYN 322 (369)
T ss_dssp TTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTT-----TS-SBSS-TTTSSSS-EESS
T ss_pred CcEEECCCCCCHHHHHHhcCE--EEEech-hHHHHHHHhCCCEEEEeccHHHHhh-----cc-CCCCchHhhCCCceeCC
Confidence 444554 44567889999999 999874 5889999999999987766655422 11 3333321 1 347
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 012563 406 KKEIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLV 454 (460)
Q Consensus 406 ~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 454 (460)
.++|.++|..++++. ..++++.+++.+++-+ ..+|.++++.++.++
T Consensus 323 ~~eL~~~i~~~~~~~--~~~~~~~~~~~~~~~~-~~Dg~s~eri~~~I~ 368 (369)
T PF04464_consen 323 FEELIEAIENIIENP--DEYKEKREKFRDKFFK-YNDGNSSERIVNYIF 368 (369)
T ss_dssp HHHHHHHHTTHHHHH--HHTHHHHHHHHHHHST-T--S-HHHHHHHHHH
T ss_pred HHHHHHHHHhhhhCC--HHHHHHHHHHHHHhCC-CCCchHHHHHHHHHh
Confidence 899999999998762 3455666666666642 224555555544443
No 181
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=73.69 E-value=4.2 Score=34.98 Aligned_cols=33 Identities=12% Similarity=0.176 Sum_probs=25.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
|||.++. +.|++ -..++++...|||+||.++..
T Consensus 1 mKIaiIg--AsG~~--Gs~i~~EA~~RGHeVTAivRn 33 (211)
T COG2910 1 MKIAIIG--ASGKA--GSRILKEALKRGHEVTAIVRN 33 (211)
T ss_pred CeEEEEe--cCchh--HHHHHHHHHhCCCeeEEEEeC
Confidence 6788775 44444 346889999999999999984
No 182
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=72.26 E-value=6.4 Score=32.34 Aligned_cols=39 Identities=21% Similarity=0.283 Sum_probs=36.5
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 012563 12 RNGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHT 50 (460)
Q Consensus 12 ~~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~ 50 (460)
.++.||++.+.+.-||-.-.--+++.|++.|++|...+.
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~ 48 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGL 48 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCC
Confidence 588999999999999999999999999999999998765
No 183
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=71.52 E-value=2.6 Score=38.46 Aligned_cols=99 Identities=8% Similarity=0.066 Sum_probs=55.1
Q ss_pred CCCeEEEEEeccccc---CCHHHHHHHHHHHHhCCCCEEEEECCCCCCCchhhccCchhHHhhhCCCce-EEec--cch-
Q 012563 271 APKSVIYVSFGSVAA---INETEFLEIAWGLANSRVPFLWVVRPGLVDGVEWLEALPKGYLEMVDGRGY-IVQW--APQ- 343 (460)
Q Consensus 271 ~~~~~v~vs~GS~~~---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--vp~- 343 (460)
.+++.|.+..|+... .+.+.+.++++.+.+.++++++..+.... + ...-+.+.+....++. +..- +.+
T Consensus 103 ~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~l~e~ 177 (247)
T PF01075_consen 103 KDKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQ-E----KEIADQIAAGLQNPVINLAGKTSLREL 177 (247)
T ss_dssp TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHH-H----HHHHHHHHTTHTTTTEEETTTS-HHHH
T ss_pred ccCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHH-H----HHHHHHHHHhcccceEeecCCCCHHHH
Confidence 356778888887665 56788999999998777666555444320 0 0111122222222222 2222 233
Q ss_pred HHHhccCCCcceeeccCchhhHHHHhhCCCeeec
Q 012563 344 QQVLAHPAVGGFLTHSGWNSTLESICEGVPMICQ 377 (460)
Q Consensus 344 ~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~~ 377 (460)
..++.++++ +|+. -.|.++=|.+.|+|+|++
T Consensus 178 ~ali~~a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 178 AALISRADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHHTSSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred HHHHhcCCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 568899998 9987 458999999999999997
No 184
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=71.09 E-value=6.2 Score=34.62 Aligned_cols=113 Identities=11% Similarity=0.019 Sum_probs=56.0
Q ss_pred CChHHHHHHHHHHHhCCCeEEEEeCCCCCCCC----CCCCCceEEeCCCCCCCCCCCC---HHHHHHHHHHhcchhHHHH
Q 012563 26 GHINPMLQLGSILYSKGFSITIIHTKFNSPNS----CNYPHFDFHSISDGLTDPSAED---STTILITLNAKCMVPFRNC 98 (460)
Q Consensus 26 GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~ 98 (460)
-++.-.+.+...+.++|-+|.|+++....... +...+..++ ...+..+...+ ....+..+...-..-+...
T Consensus 40 ~~L~~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~~a~~~~~~~i--~~rw~~G~LTN~~~~~~~~~~~~~~~~~~~~k~ 117 (193)
T cd01425 40 EKLRLALNFIANIAAKGGKILFVGTKPQAQRAVKKFAERTGSFYV--NGRWLGGTLTNWKTIRKSIKRLKKLEKEKLEKN 117 (193)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCeee--cCeecCCcCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455556667788889999999996433221 111222221 11122222222 1122222211111112222
Q ss_pred HHHHhhcCCCCCCCCCCceEEEEcCc--chHHH-HHhhcCCCeEEEeCccHH
Q 012563 99 LAKLVSNTNNNNAQEDSVACLITDFL--WQFTH-VADEFKLPTIILQTHSVS 147 (460)
Q Consensus 99 l~~l~~~~~~~~~~~~~pDlvI~D~~--~~~~~-~A~~lgiP~v~~~~~~~~ 147 (460)
+..+..... .||+||.-.- ...+. -|.++|||.|.+.-+.+.
T Consensus 118 ~~g~~~~~~-------~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn~~ 162 (193)
T cd01425 118 LGGIKDMFR-------LPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTNCD 162 (193)
T ss_pred ccccccccc-------CCCEEEEeCCccchHHHHHHHHcCCCEEEEecCCCC
Confidence 222222211 6999886552 24455 899999999998777543
No 185
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=69.41 E-value=6.4 Score=34.48 Aligned_cols=39 Identities=15% Similarity=0.093 Sum_probs=31.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 13 NGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
+++||++--.|+.|=+.-...+++.|.++||+|.++.++
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~ 42 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSY 42 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECH
Confidence 356777776676665555799999999999999999985
No 186
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=67.51 E-value=73 Score=26.61 Aligned_cols=137 Identities=16% Similarity=0.234 Sum_probs=70.0
Q ss_pred EEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEECCCCCCCchhhccCchhHHhhhCCCceEEeccchHHHhccCCCcc
Q 012563 275 VIYVSFGSVAAINETEFLEIAWGLANSRVPFLWVVRPGLVDGVEWLEALPKGYLEMVDGRGYIVQWAPQQQVLAHPAVGG 354 (460)
Q Consensus 275 ~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~lL~~~~~~~ 354 (460)
.|-|-+||.. +....+.+...|+..+..+-+.+... ...|+.+.+ |+. -+.....++
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~sa--------HR~p~~l~~----------~~~---~~~~~~~~v 58 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASA--------HRTPERLLE----------FVK---EYEARGADV 58 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--T--------TTSHHHHHH----------HHH---HTTTTTESE
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEec--------cCCHHHHHH----------HHH---HhccCCCEE
Confidence 3555567655 56778888899998887665544332 123444421 111 111212234
Q ss_pred eeeccCchhhHHHHhh---CCCeeecCcccchhhHHH----HHHHhhceeEeeCC---ccCHHHHHHHHHHHhccchHHH
Q 012563 355 FLTHSGWNSTLESICE---GVPMICQPCLADQMVNAR----YVSHVWRVGLHLEG---KLEKKEIETAIRRLMVEAEGQE 424 (460)
Q Consensus 355 ~I~HGG~~s~~eal~~---GvP~v~~P~~~DQ~~na~----~v~~~lG~G~~~~~---~~~~~~l~~~i~~ll~~~~~~~ 424 (460)
||.=.|...-+-++.+ -.|+|.+|....+..... .++---|+++..-. ..+...++-.|-. +.| ++
T Consensus 59 iIa~AG~~a~Lpgvva~~t~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~~~~nAA~~A~~ILa-~~d---~~ 134 (150)
T PF00731_consen 59 IIAVAGMSAALPGVVASLTTLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGINNGFNAALLAARILA-LKD---PE 134 (150)
T ss_dssp EEEEEESS--HHHHHHHHSSS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SSTHHHHHHHHHHHHHH-TT----HH
T ss_pred EEEECCCcccchhhheeccCCCEEEeecCcccccCcccHHHHHhccCCCCceEEEccCchHHHHHHHHHHh-cCC---HH
Confidence 9988886433333332 579999999876543222 22210144443322 3444555444432 345 78
Q ss_pred HHHHHHHHHHHHHH
Q 012563 425 MRERITCLKKNVDA 438 (460)
Q Consensus 425 ~~~~a~~l~~~~~~ 438 (460)
++++.+.+++++++
T Consensus 135 l~~kl~~~~~~~~~ 148 (150)
T PF00731_consen 135 LREKLRAYREKMKE 148 (150)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999988875
No 187
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=67.46 E-value=23 Score=34.88 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=39.4
Q ss_pred CCCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 012563 11 PRNGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNSPN 56 (460)
Q Consensus 11 ~~~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~ 56 (460)
..++-.|+++-.-+.|-..-+-.||+.|.++|+.|.+++.+-+-+.
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpA 142 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPA 142 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChH
Confidence 4456788899888999999999999999999999999998754433
No 188
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=66.88 E-value=12 Score=29.57 Aligned_cols=36 Identities=28% Similarity=0.356 Sum_probs=32.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHT 50 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~ 50 (460)
.|+++.+.+..-|-.-+.-+|..|.++||+|.++..
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~ 36 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDA 36 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEES
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECC
Confidence 378999999999999999999999999999998855
No 189
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=66.33 E-value=87 Score=27.36 Aligned_cols=59 Identities=10% Similarity=0.083 Sum_probs=44.6
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCC---CC---CCCCCCceEEeCCCC
Q 012563 13 NGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNS---PN---SCNYPHFDFHSISDG 71 (460)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~---~~---~~~~~~~~~~~~~~~ 71 (460)
++-.|.+++..+.|-....+.+|-+.+.+|++|.++.-=... .+ ....+++++...+.+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~ 85 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTG 85 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCC
Confidence 456899999999999999999999999999999998742211 11 122357888887754
No 190
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=66.31 E-value=81 Score=27.45 Aligned_cols=109 Identities=15% Similarity=0.216 Sum_probs=62.4
Q ss_pred ccccccCCCC--CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCC----CC-CCC--CCCceEEeCCCCCCC
Q 012563 4 KQESRISPRN--GRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNS----PN-SCN--YPHFDFHSISDGLTD 74 (460)
Q Consensus 4 ~~~~~~~~~~--~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~----~~-~~~--~~~~~~~~~~~~~~~ 74 (460)
.+++++...+ +--|.+++..+.|-..-.+.+|-+-.-+|.+|.++.--... +. ... ..+++|+..++++.-
T Consensus 16 ~~d~~~~~~~~~~Gli~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~~~~~v~~~~~~~g~tw 95 (198)
T COG2109 16 SVDERVATATEEKGLIIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEKFGLGVEFHGMGEGFTW 95 (198)
T ss_pred cccchhcccccccCeEEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHhhccceeEEecCCceeC
Confidence 3444544444 33477888888898888888887777788888887642111 11 111 145888888865443
Q ss_pred CCCCCHHHHHHHHHHhcchhHHHHHHHHhhcCCCCCCCCCCceEEEEcCcch
Q 012563 75 PSAEDSTTILITLNAKCMVPFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQ 126 (460)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~ 126 (460)
.... ... .. ..+...+....+.+... ++|+||.|-+++
T Consensus 96 ~~~~-~~~---d~-~aa~~~w~~a~~~l~~~---------~ydlviLDEl~~ 133 (198)
T COG2109 96 ETQD-REA---DI-AAAKAGWEHAKEALADG---------KYDLVILDELNY 133 (198)
T ss_pred CCcC-cHH---HH-HHHHHHHHHHHHHHhCC---------CCCEEEEehhhH
Confidence 2211 111 11 22233344444445433 799999998664
No 191
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=65.96 E-value=12 Score=33.05 Aligned_cols=57 Identities=12% Similarity=0.083 Sum_probs=43.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC---CCCCceEEeCC
Q 012563 13 NGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNSPNSC---NYPHFDFHSIS 69 (460)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~~~---~~~~~~~~~~~ 69 (460)
++.+|++.+.++-.|-....-++..|.++|++|++++.+-..+... ...+.+++.+.
T Consensus 81 ~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~~d~v~lS 140 (201)
T cd02070 81 KKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHKPDILGLS 140 (201)
T ss_pred CCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEe
Confidence 4679999999999999999999999999999999988653333321 12345555555
No 192
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=65.77 E-value=13 Score=32.72 Aligned_cols=106 Identities=14% Similarity=-0.016 Sum_probs=66.4
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC---CCCCceEEeCCCCCCCCCCCCHHHHHHHHH
Q 012563 12 RNGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNSPNSC---NYPHFDFHSISDGLTDPSAEDSTTILITLN 88 (460)
Q Consensus 12 ~~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (460)
.++.+|++.+.++-.|-....-++..|..+|++|++++.+-..+... ...+.+++.+.-.....
T Consensus 82 ~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~pd~v~lS~~~~~~------------- 148 (197)
T TIGR02370 82 EVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEKPLMLTGSALMTTT------------- 148 (197)
T ss_pred CCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEccccccC-------------
Confidence 34579999999999999999999999999999999999864433321 22345555554222211
Q ss_pred HhcchhHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH-HHhhcCCCeEE
Q 012563 89 AKCMVPFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH-VADEFKLPTII 140 (460)
Q Consensus 89 ~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~-~A~~lgiP~v~ 140 (460)
...+++.++.+.+..... ++-++|....+ .. .|+++|.-.+.
T Consensus 149 ---~~~~~~~i~~l~~~~~~~-----~v~i~vGG~~~--~~~~~~~~gad~~~ 191 (197)
T TIGR02370 149 ---MYGQKDINDKLKEEGYRD-----SVKFMVGGAPV--TQDWADKIGADVYG 191 (197)
T ss_pred ---HHHHHHHHHHHHHcCCCC-----CCEEEEEChhc--CHHHHHHhCCcEEe
Confidence 011344555665542210 35566666433 45 77777765443
No 193
>PRK10867 signal recognition particle protein; Provisional
Probab=65.62 E-value=30 Score=34.53 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=35.8
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEeCCCCCC
Q 012563 14 GRRVILFPLPFQGHINPMLQLGSILYSK-GFSITIIHTKFNSP 55 (460)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~lA~~L~~r-Gh~V~~~~~~~~~~ 55 (460)
+..|+++..++.|-..-...||..|+++ |+.|.++..+...+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 5667777778999999999999999999 99999999875443
No 194
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=65.04 E-value=67 Score=32.08 Aligned_cols=93 Identities=12% Similarity=0.075 Sum_probs=53.5
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCCCCCHHHHHHHHHHhcchhH
Q 012563 16 RVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNSPNSCNYPHFDFHSISDGLTDPSAEDSTTILITLNAKCMVPF 95 (460)
Q Consensus 16 ~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 95 (460)
|+.++..+.. .+.+++.|.+-|-+|+.+++......... ..... +. .+..... ....+
T Consensus 287 kv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~~~~~~~~~-~~~~~--~~-~~~~~v~-------------~~~dl 344 (422)
T TIGR02015 287 RVTVSGYEGS-----ELLVVRLLLESGADVPYVGTAIPRTAWGA-EDKRW--LE-MLGVEVK-------------YRASL 344 (422)
T ss_pred eEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecCCCCccccH-HHHHH--HH-hcCCCce-------------eccCH
Confidence 7777776655 88999999999999999987422111110 00000 00 0100000 00123
Q ss_pred HHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH-HHhhcCCCeEEEe
Q 012563 96 RNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH-VADEFKLPTIILQ 142 (460)
Q Consensus 96 ~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~-~A~~lgiP~v~~~ 142 (460)
.+.++.+.+. +||++|... -+. +|+++|||++.+.
T Consensus 345 ~~~~~~l~~~---------~pDllig~s---~~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 345 EDDMEAVLEF---------EPDLAIGTT---PLVQFAKEHGIPALYFT 380 (422)
T ss_pred HHHHHHHhhC---------CCCEEEcCC---cchHHHHHcCCCEEEec
Confidence 3333444332 899999983 345 9999999999854
No 195
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=64.87 E-value=1.7e+02 Score=29.88 Aligned_cols=106 Identities=11% Similarity=0.131 Sum_probs=68.8
Q ss_pred eEEeccchHH---HhccCCCcceee---ccCchhhH-HHHhhCC----CeeecCcccchhhHHHHHHHhhceeEeeCCcc
Q 012563 336 YIVQWAPQQQ---VLAHPAVGGFLT---HSGWNSTL-ESICEGV----PMICQPCLADQMVNARYVSHVWRVGLHLEGKL 404 (460)
Q Consensus 336 ~~~~~vp~~~---lL~~~~~~~~I~---HGG~~s~~-eal~~Gv----P~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~ 404 (460)
++.+.+|+.+ +++.+++ ++- .-|+|-+. |.++++. |+|+--+.+ |. ++ +.-++.+.. .
T Consensus 365 ~~~~~v~~~el~alYr~ADV--~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG-----aa--~~-l~~AllVNP-~ 433 (487)
T TIGR02398 365 FFTRSLPYEEVSAWFAMADV--MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG-----AA--VE-LKGALLTNP-Y 433 (487)
T ss_pred EEcCCCCHHHHHHHHHhCCE--EEECccccccCcchhhHHhhhcCCCCCEEEecccc-----ch--hh-cCCCEEECC-C
Confidence 4557788765 6667777 654 45888655 9999987 555533221 11 34 455677775 7
Q ss_pred CHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 012563 405 EKKEIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHIL 458 (460)
Q Consensus 405 ~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
+.++++++|.++|+... ++-+++.+++.+.++ .-.+..=.+.+++.+.
T Consensus 434 d~~~~A~ai~~AL~m~~-~Er~~R~~~l~~~v~-----~~d~~~W~~~fl~~l~ 481 (487)
T TIGR02398 434 DPVRMDETIYVALAMPK-AEQQARMREMFDAVN-----YYDVQRWADEFLAAVS 481 (487)
T ss_pred CHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHh-----hCCHHHHHHHHHHHhh
Confidence 99999999999998643 344566666666665 3345555666666654
No 196
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=64.57 E-value=18 Score=32.16 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=34.5
Q ss_pred EEEEEcCC--CCCChHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 012563 16 RVILFPLP--FQGHINPMLQLGSILYSKGFSITIIHTKFNSPN 56 (460)
Q Consensus 16 ~il~~~~~--~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~ 56 (460)
+|.++++| +-|-..-...|+-.|+.+|++|.++-.+....+
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRN 45 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRN 45 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCchh
Confidence 67788877 679999999999999999999999988754444
No 197
>PRK09620 hypothetical protein; Provisional
Probab=64.18 E-value=25 Score=31.81 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=28.8
Q ss_pred CCcEEEEEcCCCCCChHH------------HHHHHHHHHhCCCeEEEEeCC
Q 012563 13 NGRRVILFPLPFQGHINP------------MLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 13 ~~~~il~~~~~~~GHv~p------------~l~lA~~L~~rGh~V~~~~~~ 51 (460)
+.++|++...|+.=.+.| -..||++|.++|++|+++...
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 356777776665444332 478999999999999999864
No 198
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=63.99 E-value=12 Score=29.91 Aligned_cols=36 Identities=17% Similarity=0.291 Sum_probs=33.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 16 RVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 16 ~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
||++.+.++-.|..-..-++.-|..+|++|++....
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~ 36 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLR 36 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCC
Confidence 689999999999999999999999999999999985
No 199
>PRK14099 glycogen synthase; Provisional
Probab=63.83 E-value=11 Score=38.44 Aligned_cols=39 Identities=15% Similarity=0.125 Sum_probs=30.3
Q ss_pred CCcEEEEEcCC------CCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 13 NGRRVILFPLP------FQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 13 ~~~~il~~~~~------~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
++|||++++.- +.|=-.-.-+|.++|+++||+|.++.+.
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~ 46 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPG 46 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 57999999864 2233444667889999999999999985
No 200
>PRK08506 replicative DNA helicase; Provisional
Probab=63.82 E-value=16 Score=37.16 Aligned_cols=40 Identities=10% Similarity=0.171 Sum_probs=33.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNS 54 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~ 54 (460)
-=+++...|+.|-..-.+.+|...++.|+.|.|++-+...
T Consensus 193 ~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~ 232 (472)
T PRK08506 193 DLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPA 232 (472)
T ss_pred ceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCH
Confidence 3566777889999999999999998889999999986443
No 201
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=62.50 E-value=37 Score=33.81 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=35.8
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012563 14 GRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNS 54 (460)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~ 54 (460)
+..|+++-.++.|-..-+..||..|.++|++|.+++.+.+.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 46788888889999999999999999999999999987443
No 202
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=62.41 E-value=12 Score=33.89 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=18.2
Q ss_pred HHHHHHHHHhCCCeEEEEeCC
Q 012563 31 MLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 31 ~l~lA~~L~~rGh~V~~~~~~ 51 (460)
..+||++|.++||+|+++...
T Consensus 29 G~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 29 GKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred HHHHHHHHHhCCCEEEEEECc
Confidence 478899999999999999753
No 203
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=62.24 E-value=43 Score=29.57 Aligned_cols=142 Identities=13% Similarity=0.116 Sum_probs=76.0
Q ss_pred CCCeEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEECCCCCCCchhhccCchhHHhhhC-CCceEEeccchHHHhcc
Q 012563 271 APKSVIYVSFGSVAAINETEFLEIAWGLANSRVPFLWVVRPGLVDGVEWLEALPKGYLEMVD-GRGYIVQWAPQQQVLAH 349 (460)
Q Consensus 271 ~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~vp~~~lL~~ 349 (460)
.+++++.|..|.++ ...+..|.+.+..+.++- .. ..+.+.+..+ ..+..........-+..
T Consensus 9 ~~k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VIs-~~----------~~~~l~~l~~~~~i~~~~~~~~~~~l~~ 70 (202)
T PRK06718 9 SNKRVVIVGGGKVA-------GRRAITLLKYGAHIVVIS-PE----------LTENLVKLVEEGKIRWKQKEFEPSDIVD 70 (202)
T ss_pred CCCEEEEECCCHHH-------HHHHHHHHHCCCeEEEEc-CC----------CCHHHHHHHhCCCEEEEecCCChhhcCC
Confidence 36788888777765 334455555676665543 22 1122222222 22333333334555677
Q ss_pred CCCcceeeccCchhhHHHHh----hCCCeeecCcccchhhH-----HHHHHHhhceeEeeCC----ccCHHHHHHHHHHH
Q 012563 350 PAVGGFLTHSGWNSTLESIC----EGVPMICQPCLADQMVN-----ARYVSHVWRVGLHLEG----KLEKKEIETAIRRL 416 (460)
Q Consensus 350 ~~~~~~I~HGG~~s~~eal~----~GvP~v~~P~~~DQ~~n-----a~~v~~~lG~G~~~~~----~~~~~~l~~~i~~l 416 (460)
+++ +|.--+.-.+.+.++ .++++-+ .|.+.. -..+.+. ++-+.+.. ..-+..|++.|..+
T Consensus 71 adl--ViaaT~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~~~g-~l~iaIsT~G~sP~la~~lr~~ie~~ 143 (202)
T PRK06718 71 AFL--VIAATNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSALHRG-KLTISVSTDGASPKLAKKIRDELEAL 143 (202)
T ss_pred ceE--EEEcCCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEEEcC-CeEEEEECCCCChHHHHHHHHHHHHH
Confidence 777 888878776666655 4554433 343322 2334443 45555543 23446677777776
Q ss_pred hccchHHHHHHHHHHHHHHHHH
Q 012563 417 MVEAEGQEMRERITCLKKNVDA 438 (460)
Q Consensus 417 l~~~~~~~~~~~a~~l~~~~~~ 438 (460)
+.. +...+-+.+.++++.+++
T Consensus 144 ~~~-~~~~~~~~~~~~R~~~k~ 164 (202)
T PRK06718 144 YDE-SYESYIDFLYECRQKIKE 164 (202)
T ss_pred cch-hHHHHHHHHHHHHHHHHH
Confidence 632 234566666777777764
No 204
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=61.90 E-value=22 Score=35.89 Aligned_cols=53 Identities=19% Similarity=0.319 Sum_probs=39.7
Q ss_pred CCcEEEEEcCCCCCChHH------------HHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeC
Q 012563 13 NGRRVILFPLPFQGHINP------------MLQLGSILYSKGFSITIIHTKFNSPNSCNYPHFDFHSI 68 (460)
Q Consensus 13 ~~~~il~~~~~~~GHv~p------------~l~lA~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~ 68 (460)
+.+||++...|+.=-+.| -.+||+++..+|++||+++.+...+ ...+++++.+
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~~~---~p~~v~~i~V 319 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVDLA---DPQGVKVIHV 319 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcCCC---CCCCceEEEe
Confidence 578999999988877766 5789999999999999999754322 1235555544
No 205
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=61.38 E-value=1e+02 Score=29.41 Aligned_cols=40 Identities=15% Similarity=0.146 Sum_probs=32.2
Q ss_pred cEEEEEcC-CCCCChHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012563 15 RRVILFPL-PFQGHINPMLQLGSILYSKGFSITIIHTKFNS 54 (460)
Q Consensus 15 ~~il~~~~-~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~ 54 (460)
+||++++. |+-|-..-..++|-.|++.|.+|.+++++..+
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAh 42 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAH 42 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCC
Confidence 56777665 46698888999999999999999999886444
No 206
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=61.15 E-value=12 Score=34.53 Aligned_cols=28 Identities=14% Similarity=0.286 Sum_probs=23.0
Q ss_pred CCCcceeeccCchhhHHHHh------hCCCeeecCc
Q 012563 350 PAVGGFLTHSGWNSTLESIC------EGVPMICQPC 379 (460)
Q Consensus 350 ~~~~~~I~HGG~~s~~eal~------~GvP~v~~P~ 379 (460)
+++ +|+-||-||++.++. .++|++.+-.
T Consensus 36 ~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN~ 69 (265)
T PRK04885 36 PDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVHT 69 (265)
T ss_pred CCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEeC
Confidence 455 999999999999986 4788888654
No 207
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.59 E-value=86 Score=29.16 Aligned_cols=38 Identities=21% Similarity=0.291 Sum_probs=29.6
Q ss_pred eEEeccchHH---HhccCCCcceeeccCchhhHHHHhhCCCeee
Q 012563 336 YIVQWAPQQQ---VLAHPAVGGFLTHSGWNSTLESICEGVPMIC 376 (460)
Q Consensus 336 ~~~~~vp~~~---lL~~~~~~~~I~HGG~~s~~eal~~GvP~v~ 376 (460)
.+..|+||++ +|--|++ -+-. |--|..-|..+|+|.+=
T Consensus 241 vklPFvpqddyd~LL~lcD~--n~VR-GEDSFVRAq~agkPflW 281 (370)
T COG4394 241 VKLPFVPQDDYDELLWLCDF--NLVR-GEDSFVRAQLAGKPFLW 281 (370)
T ss_pred EEecCCcHhHHHHHHHhccc--ceee-cchHHHHHHHcCCCcEE
Confidence 4568999854 8888887 4444 56799999999999984
No 208
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=60.38 E-value=1.3e+02 Score=27.77 Aligned_cols=39 Identities=15% Similarity=0.185 Sum_probs=29.2
Q ss_pred CCcEEEEEcCC--CCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 13 NGRRVILFPLP--FQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 13 ~~~~il~~~~~--~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
++.|++.++.+ +-|-..-...||..|++.|++|.++=.+
T Consensus 101 ~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D 141 (274)
T TIGR03029 101 EGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDAN 141 (274)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 34555555555 5577777899999999999999998543
No 209
>PRK05595 replicative DNA helicase; Provisional
Probab=60.18 E-value=14 Score=37.13 Aligned_cols=40 Identities=15% Similarity=0.256 Sum_probs=32.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHH-hCCCeEEEEeCCCCC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILY-SKGFSITIIHTKFNS 54 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~-~rGh~V~~~~~~~~~ 54 (460)
-=+++...|+.|-..-.+.+|..++ +.|+.|.|++-+...
T Consensus 202 ~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~ 242 (444)
T PRK05595 202 DMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSK 242 (444)
T ss_pred cEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCH
Confidence 3456677789999999999998876 569999999986433
No 210
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=60.04 E-value=33 Score=32.66 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=34.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNS 54 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~ 54 (460)
.=|+=++.|+.|-.--.+.||+.|.+||..+-+++..+..
T Consensus 50 I~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYgg 89 (336)
T COG1663 50 ICVGNLTVGGTGKTPVVIWLAEALQARGVRVGVVSRGYGG 89 (336)
T ss_pred EEEccEEECCCCcCHHHHHHHHHHHhcCCeeEEEecCcCC
Confidence 4456678889999999999999999999999999986444
No 211
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=59.76 E-value=23 Score=35.35 Aligned_cols=40 Identities=10% Similarity=0.203 Sum_probs=33.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHH-hCCCeEEEEeCCCCC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILY-SKGFSITIIHTKFNS 54 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~-~rGh~V~~~~~~~~~ 54 (460)
-=+++...|+.|-..-++.+|..++ +.|+.|.|++.+...
T Consensus 195 ~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~ 235 (421)
T TIGR03600 195 DLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSA 235 (421)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH
Confidence 3466777789999999999998887 679999999976433
No 212
>PRK06321 replicative DNA helicase; Provisional
Probab=59.39 E-value=23 Score=35.92 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=32.0
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHh-CCCeEEEEeCCCCC
Q 012563 16 RVILFPLPFQGHINPMLQLGSILYS-KGFSITIIHTKFNS 54 (460)
Q Consensus 16 ~il~~~~~~~GHv~p~l~lA~~L~~-rGh~V~~~~~~~~~ 54 (460)
=|++...|+.|-..-.+.+|...+. .|..|.|++-+...
T Consensus 228 LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~ 267 (472)
T PRK06321 228 LMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTV 267 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCH
Confidence 4567778899999999999999874 59999999876433
No 213
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=59.18 E-value=24 Score=35.27 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 13 NGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
+..+++++..+ .-.+.+++.|.+.|-+|..++..
T Consensus 298 ~gk~v~i~~~~-----~~~~~l~~~L~e~G~~v~~v~~~ 331 (428)
T cd01965 298 GGKRVAIAGDP-----DLLLGLSRFLLEMGAEPVAAVTG 331 (428)
T ss_pred cCCEEEEEcCh-----HHHHHHHHHHHHcCCcceEEEEc
Confidence 35678777533 35678999999999999877764
No 214
>PRK14098 glycogen synthase; Provisional
Probab=58.60 E-value=14 Score=37.64 Aligned_cols=38 Identities=18% Similarity=0.265 Sum_probs=29.3
Q ss_pred cEEEEEcCC------CCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 012563 15 RRVILFPLP------FQGHINPMLQLGSILYSKGFSITIIHTKF 52 (460)
Q Consensus 15 ~~il~~~~~------~~GHv~p~l~lA~~L~~rGh~V~~~~~~~ 52 (460)
|||++++.- +.|=-.-.-+|.++|+++||+|.++.+.+
T Consensus 6 ~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 6 FKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred cEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 999999854 22333446678899999999999999853
No 215
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=58.32 E-value=13 Score=35.39 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=29.6
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 12 RNGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 12 ~~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
.++|||+|+-.|+.| ..+|..|+++||+|+++...
T Consensus 3 ~~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 3 SETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred CcCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeC
Confidence 456999999888887 45778899999999999974
No 216
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=58.20 E-value=7.4 Score=32.79 Aligned_cols=31 Identities=16% Similarity=0.296 Sum_probs=25.5
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 16 RVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 16 ~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
||.++-.|..|+ ++|..|+++||+|++.+++
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~ 31 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRD 31 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSC
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEecc
Confidence 566666666664 8999999999999999986
No 217
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=58.18 E-value=43 Score=32.48 Aligned_cols=95 Identities=13% Similarity=0.156 Sum_probs=52.0
Q ss_pred eEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEECCCCCCCchhhccCch-hHHh-hhCC-Cc-eE------------
Q 012563 274 SVIYVSFGSVAAINETEFLEIAWGLANSRVPFLWVVRPGLVDGVEWLEALPK-GYLE-MVDG-RG-YI------------ 337 (460)
Q Consensus 274 ~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~-~~~~-~~-~~------------ 337 (460)
.+++.+.||.+-..+ -.++++.|++.++++.|+........ +-+|. ++.- ..+. .+ +.
T Consensus 3 ~i~~~~GGTGGHi~P--ala~a~~l~~~g~~v~~vg~~~~~e~----~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 76 (352)
T PRK12446 3 KIVFTGGGSAGHVTP--NLAIIPYLKEDNWDISYIGSHQGIEK----TIIEKENIPYYSISSGKLRRYFDLKNIKDPFLV 76 (352)
T ss_pred eEEEEcCCcHHHHHH--HHHHHHHHHhCCCEEEEEECCCcccc----ccCcccCCcEEEEeccCcCCCchHHHHHHHHHH
Confidence 577777777664322 23366777777889988875543211 11111 1100 0000 00 00
Q ss_pred -EeccchHHHhc--cCCCcceeeccCchh---hHHHHhhCCCeee
Q 012563 338 -VQWAPQQQVLA--HPAVGGFLTHSGWNS---TLESICEGVPMIC 376 (460)
Q Consensus 338 -~~~vp~~~lL~--~~~~~~~I~HGG~~s---~~eal~~GvP~v~ 376 (460)
..++.-..+++ ++++ +|++||+-| +..|...|+|.++
T Consensus 77 ~~~~~~~~~i~~~~kPdv--vi~~Ggy~s~p~~~aa~~~~~p~~i 119 (352)
T PRK12446 77 MKGVMDAYVRIRKLKPDV--IFSKGGFVSVPVVIGGWLNRVPVLL 119 (352)
T ss_pred HHHHHHHHHHHHhcCCCE--EEecCchhhHHHHHHHHHcCCCEEE
Confidence 00011112344 4566 999999986 8999999999988
No 218
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=58.00 E-value=1.2e+02 Score=25.72 Aligned_cols=57 Identities=12% Similarity=0.237 Sum_probs=40.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC---CCC---CCCCCCceEEeCCCC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFN---SPN---SCNYPHFDFHSISDG 71 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~---~~~---~~~~~~~~~~~~~~~ 71 (460)
--|.+++.++.|-....+.+|-+.+.+|++|.|+.--.. ..+ ....+++++...+.+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~ 65 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRG 65 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCC
Confidence 357788889999999999999999999999999553211 111 122357888887743
No 219
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=57.01 E-value=22 Score=31.71 Aligned_cols=42 Identities=14% Similarity=0.146 Sum_probs=37.8
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012563 13 NGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNS 54 (460)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~ 54 (460)
++-+|++.+.++-.|-....-++..|..+|++|++++.+-..
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~ 128 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPI 128 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCH
Confidence 567999999999999999999999999999999999975433
No 220
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=56.97 E-value=61 Score=32.54 Aligned_cols=33 Identities=24% Similarity=0.403 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 14 GRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
..++.++.-+ .-.+.+++.|.+-|-+|..+.++
T Consensus 303 gkrv~i~g~~-----~~~~~la~~L~elGm~v~~~~~~ 335 (435)
T cd01974 303 GKKFALYGDP-----DFLIGLTSFLLELGMEPVHVLTG 335 (435)
T ss_pred CCEEEEEcCh-----HHHHHHHHHHHHCCCEEEEEEeC
Confidence 4677776533 34788889999999999887763
No 221
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=56.79 E-value=20 Score=33.70 Aligned_cols=54 Identities=17% Similarity=0.260 Sum_probs=35.2
Q ss_pred ccCCCcceeeccCchhhHHHHhh----CCCeeecCcccchhhHHHHHHHhhceeEeeCCccCHHHHHHHHHHHhcc
Q 012563 348 AHPAVGGFLTHSGWNSTLESICE----GVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEKKEIETAIRRLMVE 419 (460)
Q Consensus 348 ~~~~~~~~I~HGG~~s~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~l~~~i~~ll~~ 419 (460)
..+++ +|+-||-||+++++.. ++|++.+-.. .+|.-. ..+.+++.++|.+++++
T Consensus 62 ~~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn~G--------------~lGFL~--~~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 62 ARADL--AVVLGGDGTMLGIGRQLAPYGVPLIGINHG--------------RLGFIT--DIPLDDMQETLPPMLAG 119 (291)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcCC--------------Cccccc--cCCHHHHHHHHHHHHcC
Confidence 34566 9999999999999874 6787775431 112111 35566666666666654
No 222
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.71 E-value=30 Score=31.15 Aligned_cols=26 Identities=19% Similarity=0.087 Sum_probs=21.1
Q ss_pred CceEEEEcCcchHH---H-HHhhcCCCeEE
Q 012563 115 SVACLITDFLWQFT---H-VADEFKLPTII 140 (460)
Q Consensus 115 ~pDlvI~D~~~~~~---~-~A~~lgiP~v~ 140 (460)
+-++.+.|..++.. . +|.+.|||++.
T Consensus 149 ~r~l~flDs~T~a~S~a~~iAk~~gVp~~~ 178 (250)
T COG2861 149 ERGLYFLDSGTIANSLAGKIAKEIGVPVIK 178 (250)
T ss_pred HCCeEEEcccccccchhhhhHhhcCCceee
Confidence 46899999877544 2 89999999986
No 223
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=56.22 E-value=1.3e+02 Score=27.82 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCCChHH-HHHHHHHHHhC---CCeEEEEeCCCCC
Q 012563 15 RRVILFPLPFQGHINP-MLQLGSILYSK---GFSITIIHTKFNS 54 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p-~l~lA~~L~~r---Gh~V~~~~~~~~~ 54 (460)
||||+.- --|=-.| +.+|++.|.+. |++|+++.+....
T Consensus 1 M~ILlTN--DDGI~a~Gl~aL~~~l~~~~~~~~~V~VVAP~~eq 42 (261)
T PRK13931 1 MRILITN--DDGINAPGLEVLEQIATELAGPDGEVWTVAPAFEQ 42 (261)
T ss_pred CeEEEEc--CCCCCCHhHHHHHHHHHHhccCCCeEEEEeCCCCC
Confidence 4555543 2222223 56677777663 4799999986444
No 224
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=56.14 E-value=9.5 Score=33.23 Aligned_cols=92 Identities=14% Similarity=0.103 Sum_probs=45.0
Q ss_pred cCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCCCCC-CCC--CCCceEEeCCCCCCCCCCCCHHHHHHHHHHhcchhH
Q 012563 21 PLPFQGHINPMLQLGSILYSK--GFSITIIHTKFNSPN-SCN--YPHFDFHSISDGLTDPSAEDSTTILITLNAKCMVPF 95 (460)
Q Consensus 21 ~~~~~GHv~p~l~lA~~L~~r--Gh~V~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 95 (460)
=..+.|-++-..+|+++|.++ |+.|.+-++...... ..+ ...+.+.-+|-+.+ ...
T Consensus 27 Ha~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~~v~~~~~P~D~~-------------------~~~ 87 (186)
T PF04413_consen 27 HAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPDRVDVQYLPLDFP-------------------WAV 87 (186)
T ss_dssp E-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GGG-SEEE---SSH-------------------HHH
T ss_pred EECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCCCeEEEEeCccCH-------------------HHH
Confidence 346789999999999999987 888888776321111 110 11233333442111 123
Q ss_pred HHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH---HHhhcCCCeEEEeC
Q 012563 96 RNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH---VADEFKLPTIILQT 143 (460)
Q Consensus 96 ~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~---~A~~lgiP~v~~~~ 143 (460)
+..++.+ +||++|.-....|-. .|++.|||.+.+..
T Consensus 88 ~rfl~~~------------~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 88 RRFLDHW------------RPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp HHHHHHH--------------SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred HHHHHHh------------CCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 4456666 788888666555555 88889999998644
No 225
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=55.72 E-value=87 Score=26.49 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=32.7
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012563 17 VILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFN 53 (460)
Q Consensus 17 il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~ 53 (460)
+++.-.++.|-......+|..|+++|.+|.++..+..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 5677778999999999999999999999999998644
No 226
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=55.69 E-value=39 Score=33.70 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=23.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 16 RVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 16 ~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
|+.++..+.. .+.+++-|.+-|-+|+.+++.
T Consensus 282 kv~v~g~~~~-----~~~la~~L~elGmevv~~~t~ 312 (416)
T cd01980 282 RVLVSGYEGN-----ELLVARLLIESGAEVPYVSTS 312 (416)
T ss_pred eEEEECCCch-----hHHHHHHHHHcCCEEEEEecC
Confidence 6666554443 566999999999999999985
No 227
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=55.14 E-value=46 Score=33.32 Aligned_cols=86 Identities=20% Similarity=0.246 Sum_probs=51.4
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCCCCCHHHHHHHHHHhcch
Q 012563 14 GRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNSPNSCNYPHFDFHSISDGLTDPSAEDSTTILITLNAKCMV 93 (460)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (460)
..|++++..+ .....+++.|.+.|.+|..+......+... .++.. .. ...
T Consensus 311 Gkrvai~~~~-----~~~~~l~~~l~elGm~v~~~~~~~~~~~~~--------~~~~~---~~--------------~~~ 360 (432)
T TIGR01285 311 GKKVAIAAEP-----DLLAAWATFFTSMGAQIVAAVTTTGSPLLQ--------KLPVE---TV--------------VIG 360 (432)
T ss_pred CCEEEEEcCH-----HHHHHHHHHHHHCCCEEEEEEeCCCCHHHH--------hCCcC---cE--------------EeC
Confidence 4677777633 477899999999999998888754322111 01100 00 000
Q ss_pred hHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH-HHhhcCCCeEEE
Q 012563 94 PFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH-VADEFKLPTIIL 141 (460)
Q Consensus 94 ~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~-~A~~lgiP~v~~ 141 (460)
.+. .++++.+.. ++|++|... ... +|+++|||++.+
T Consensus 361 D~~-~l~~~i~~~--------~~dliig~s---~~k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 361 DLE-DLEDLACAA--------GADLLITNS---HGRALAQRLALPLVRA 397 (432)
T ss_pred CHH-HHHHHHhhc--------CCCEEEECc---chHHHHHHcCCCEEEe
Confidence 111 222232221 799999885 346 999999999863
No 228
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=54.75 E-value=15 Score=31.91 Aligned_cols=37 Identities=14% Similarity=0.099 Sum_probs=31.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
+||++--.|+.|-+.-.+.+.++|.+.|++|+++.++
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~ 37 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSE 37 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEch
Confidence 3677777788887777789999999999999999985
No 229
>PRK08006 replicative DNA helicase; Provisional
Probab=54.72 E-value=41 Score=34.10 Aligned_cols=40 Identities=13% Similarity=0.110 Sum_probs=32.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHh-CCCeEEEEeCCCCC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYS-KGFSITIIHTKFNS 54 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~-rGh~V~~~~~~~~~ 54 (460)
-=|++..-|+.|-..-.+.+|...+. .|+.|.|++-+...
T Consensus 225 ~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~ 265 (471)
T PRK08006 225 DLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPG 265 (471)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCH
Confidence 34667788899999999999999874 59999999876443
No 230
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=54.53 E-value=21 Score=33.53 Aligned_cols=55 Identities=7% Similarity=0.078 Sum_probs=35.2
Q ss_pred hccCCCcceeeccCchhhHHHHhh----CCCeeecCcccchhhHHHHHHHhhceeEeeCCccCHHHHHHHHHHHhcc
Q 012563 347 LAHPAVGGFLTHSGWNSTLESICE----GVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEKKEIETAIRRLMVE 419 (460)
Q Consensus 347 L~~~~~~~~I~HGG~~s~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~l~~~i~~ll~~ 419 (460)
...+++ +|+-||-||++.++.. ++|++.+-.. .+|.-- ..+.+++.+++.+++++
T Consensus 62 ~~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFLt--~~~~~~~~~~l~~i~~g 120 (287)
T PRK14077 62 FKISDF--LISLGGDGTLISLCRKAAEYDKFVLGIHAG--------------HLGFLT--DITVDEAEKFFQAFFQG 120 (287)
T ss_pred ccCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEEeCC--------------CcccCC--cCCHHHHHHHHHHHHcC
Confidence 345666 9999999999988663 6788775431 111111 35566666677666654
No 231
>PLN02939 transferase, transferring glycosyl groups
Probab=54.07 E-value=24 Score=38.78 Aligned_cols=41 Identities=22% Similarity=0.391 Sum_probs=31.4
Q ss_pred CCCcEEEEEcCC------CCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 012563 12 RNGRRVILFPLP------FQGHINPMLQLGSILYSKGFSITIIHTKF 52 (460)
Q Consensus 12 ~~~~~il~~~~~------~~GHv~p~l~lA~~L~~rGh~V~~~~~~~ 52 (460)
+.+|||++++.- +.|=-.-.-+|.++|++.||+|.+++|.+
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y 525 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKY 525 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 568999999753 22333445678899999999999999964
No 232
>PRK06849 hypothetical protein; Provisional
Probab=54.00 E-value=24 Score=34.71 Aligned_cols=35 Identities=11% Similarity=0.257 Sum_probs=28.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 13 NGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
++|+|++..... ...+.+|+.|.++||+|+++...
T Consensus 3 ~~~~VLI~G~~~----~~~l~iar~l~~~G~~Vi~~d~~ 37 (389)
T PRK06849 3 TKKTVLITGARA----PAALELARLFHNAGHTVILADSL 37 (389)
T ss_pred CCCEEEEeCCCc----HHHHHHHHHHHHCCCEEEEEeCC
Confidence 578888885332 36899999999999999999774
No 233
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=53.06 E-value=23 Score=33.37 Aligned_cols=55 Identities=20% Similarity=0.294 Sum_probs=37.8
Q ss_pred hccCCCcceeeccCchhhHHHHhh----CCCeeecCcccchhhHHHHHHHhhceeEeeCCccCHHHHHHHHHHHhcc
Q 012563 347 LAHPAVGGFLTHSGWNSTLESICE----GVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEKKEIETAIRRLMVE 419 (460)
Q Consensus 347 L~~~~~~~~I~HGG~~s~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~l~~~i~~ll~~ 419 (460)
...+++ +|+=||-||++.++.. ++|++.+-.. .+|.-- ..+.+++.+++.+++++
T Consensus 62 ~~~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFLt--~~~~~~~~~~l~~i~~g 120 (292)
T PRK01911 62 DGSADM--VISIGGDGTFLRTATYVGNSNIPILGINTG--------------RLGFLA--TVSKEEIEETIDELLNG 120 (292)
T ss_pred ccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEecC--------------CCCccc--ccCHHHHHHHHHHHHcC
Confidence 345667 9999999999999873 6788875431 112111 46677777888877765
No 234
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=52.57 E-value=9.6 Score=38.32 Aligned_cols=59 Identities=22% Similarity=0.361 Sum_probs=41.6
Q ss_pred hhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCC-ccCHHHHHHHHHHHhccchHHHHHHHH
Q 012563 363 STLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEG-KLEKKEIETAIRRLMVEAEGQEMRERI 429 (460)
Q Consensus 363 s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~-~~~~~~l~~~i~~ll~~~~~~~~~~~a 429 (460)
++.||+++|+|++.. ++..=+.-|+. .--|...+. .-....+++++-++..| .+++.++
T Consensus 381 v~IEAMa~glPvvAt----~~GGP~EiV~~-~~tG~l~dp~~e~~~~~a~~~~kl~~~---p~l~~~~ 440 (495)
T KOG0853|consen 381 VPIEAMACGLPVVAT----NNGGPAEIVVH-GVTGLLIDPGQEAVAELADALLKLRRD---PELWARM 440 (495)
T ss_pred eeHHHHhcCCCEEEe----cCCCceEEEEc-CCcceeeCCchHHHHHHHHHHHHHhcC---HHHHHHH
Confidence 789999999999994 44444555555 366666665 22333799999999999 6665544
No 235
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=51.95 E-value=82 Score=27.20 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhC
Q 012563 14 GRRVILFPLPFQGHINPMLQLGSILYSK 41 (460)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~lA~~L~~r 41 (460)
..+++++- |+.||..=|+.|-+.|.++
T Consensus 38 s~~~lVvl-GSGGHT~EMlrLl~~l~~~ 64 (211)
T KOG3339|consen 38 SLSTLVVL-GSGGHTGEMLRLLEALQDL 64 (211)
T ss_pred cceEEEEE-cCCCcHHHHHHHHHHHHhh
Confidence 34666665 9999999999999999776
No 236
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=51.95 E-value=18 Score=31.42 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=31.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFN 53 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~ 53 (460)
+||++.-.|+.|=+. ...+.+.|.++|++|.++.++..
T Consensus 2 k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A 39 (182)
T PRK07313 2 KNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAA 39 (182)
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhH
Confidence 467777777777665 89999999999999999998543
No 237
>PRK06904 replicative DNA helicase; Validated
Probab=51.77 E-value=38 Score=34.39 Aligned_cols=40 Identities=10% Similarity=0.090 Sum_probs=32.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHh-CCCeEEEEeCCCCC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYS-KGFSITIIHTKFNS 54 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~-rGh~V~~~~~~~~~ 54 (460)
-=|++..-|+.|-..-++.+|...+. .|+.|.|++-+...
T Consensus 222 ~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~ 262 (472)
T PRK06904 222 DLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPA 262 (472)
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCH
Confidence 45667788899999999999998875 59999999986444
No 238
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.71 E-value=25 Score=33.28 Aligned_cols=54 Identities=13% Similarity=0.259 Sum_probs=36.8
Q ss_pred ccCCCcceeeccCchhhHHHHhh----CCCeeecCcccchhhHHHHHHHhhceeEeeCCccCHHHHHHHHHHHhcc
Q 012563 348 AHPAVGGFLTHSGWNSTLESICE----GVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEKKEIETAIRRLMVE 419 (460)
Q Consensus 348 ~~~~~~~~I~HGG~~s~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~l~~~i~~ll~~ 419 (460)
..+++ +|+=||-||++.+... ++|++.+-.. .+|..- ..+.+++.+++.+++++
T Consensus 67 ~~~Dl--vi~iGGDGTlL~aar~~~~~~iPilGIN~G--------------~lGFLt--~~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 67 SSMKF--AIVLGGDGTVLSAARQLAPCGIPLLTINTG--------------HLGFLT--EAYLNQLDEAIDQVLAG 124 (305)
T ss_pred cCcCE--EEEEeCcHHHHHHHHHhcCCCCcEEEEeCC--------------CCcccc--cCCHHHHHHHHHHHHcC
Confidence 34566 9999999999999774 7888886431 112111 45667777777777765
No 239
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=50.71 E-value=24 Score=32.45 Aligned_cols=39 Identities=23% Similarity=0.433 Sum_probs=35.3
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 13 NGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
.+..++|+-.++.|-..=..++|.+|.++|+.|+|++.+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~ 142 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAP 142 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 567899999999999999999999999889999999974
No 240
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=50.31 E-value=33 Score=28.02 Aligned_cols=56 Identities=13% Similarity=0.027 Sum_probs=42.6
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC---CCCCceEEeCC
Q 012563 14 GRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNSPNSC---NYPHFDFHSIS 69 (460)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~~~---~~~~~~~~~~~ 69 (460)
+.+|++-+.++-+|-.----++..|.++|++|+..+.+-..+... ...+.+++.++
T Consensus 1 ~~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~~adiVglS 59 (134)
T TIGR01501 1 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIETKADAILVS 59 (134)
T ss_pred CCeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEe
Confidence 458999999999999999999999999999999998753332221 12356666665
No 241
>PRK13604 luxD acyl transferase; Provisional
Probab=49.75 E-value=34 Score=32.38 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=32.3
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEe
Q 012563 12 RNGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIH 49 (460)
Q Consensus 12 ~~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~ 49 (460)
.++...+++++|..++-..+..+|+.|+++|+.|.-+=
T Consensus 34 ~~~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD 71 (307)
T PRK13604 34 PKKNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYD 71 (307)
T ss_pred CCCCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEec
Confidence 34567888899988887779999999999999998764
No 242
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.73 E-value=25 Score=33.16 Aligned_cols=54 Identities=11% Similarity=0.113 Sum_probs=36.8
Q ss_pred ccCCCcceeeccCchhhHHHHh----hCCCeeecCcccchhhHHHHHHHhhceeEeeCCccCHHHHHHHHHHHhcc
Q 012563 348 AHPAVGGFLTHSGWNSTLESIC----EGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEKKEIETAIRRLMVE 419 (460)
Q Consensus 348 ~~~~~~~~I~HGG~~s~~eal~----~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~l~~~i~~ll~~ 419 (460)
..+++ +|+=||-||++.+.. .++|++.+-.. .+|.-. .++.+++.+++.+++++
T Consensus 67 ~~~D~--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFL~--~~~~~~~~~~l~~i~~g 124 (296)
T PRK04539 67 QYCDL--VAVLGGDGTFLSVAREIAPRAVPIIGINQG--------------HLGFLT--QIPREYMTDKLLPVLEG 124 (296)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhcccCCCEEEEecC--------------CCeEee--ccCHHHHHHHHHHHHcC
Confidence 35666 999999999999975 37888885431 122222 35667777777777764
No 243
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=49.41 E-value=24 Score=33.47 Aligned_cols=40 Identities=18% Similarity=0.154 Sum_probs=31.8
Q ss_pred cEEEEEcC-CCCCChHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012563 15 RRVILFPL-PFQGHINPMLQLGSILYSKGFSITIIHTKFNS 54 (460)
Q Consensus 15 ~~il~~~~-~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~ 54 (460)
||++|+.. |+-|-..-..++|-.++++|++|.+++++...
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~ 41 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAH 41 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTT
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCc
Confidence 56666664 46799999999999999999999999997544
No 244
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.15 E-value=27 Score=32.90 Aligned_cols=55 Identities=9% Similarity=0.067 Sum_probs=37.2
Q ss_pred hccCCCcceeeccCchhhHHHHh----hCCCeeecCcccchhhHHHHHHHhhceeEeeCCccCHHHHHHHHHHHhcc
Q 012563 347 LAHPAVGGFLTHSGWNSTLESIC----EGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEKKEIETAIRRLMVE 419 (460)
Q Consensus 347 L~~~~~~~~I~HGG~~s~~eal~----~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~l~~~i~~ll~~ 419 (460)
...+++ +|+=||-||++.++. .++|++.+-.. .+|..- .++.+++.+++.+++++
T Consensus 61 ~~~~d~--vi~lGGDGT~L~aa~~~~~~~~Pilgin~G--------------~lGFl~--~~~~~~~~~~l~~i~~g 119 (292)
T PRK03378 61 GQQADL--AIVVGGDGNMLGAARVLARYDIKVIGINRG--------------NLGFLT--DLDPDNALQQLSDVLEG 119 (292)
T ss_pred CCCCCE--EEEECCcHHHHHHHHHhcCCCCeEEEEECC--------------CCCccc--ccCHHHHHHHHHHHHcC
Confidence 345666 999999999999985 36787774431 112111 45677888888888765
No 245
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=48.95 E-value=94 Score=29.79 Aligned_cols=39 Identities=15% Similarity=0.268 Sum_probs=33.1
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012563 16 RVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNS 54 (460)
Q Consensus 16 ~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~ 54 (460)
=|+=++.|+.|-.=-.+.|++.|.++|++|.+++.++..
T Consensus 39 sVGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~ 77 (326)
T PF02606_consen 39 SVGNLTVGGTGKTPLVIWLARLLQARGYRPAILSRGYGR 77 (326)
T ss_pred EEcccccCCCCchHHHHHHHHHHHhcCCceEEEcCCCCC
Confidence 455567789999999999999999999999999985443
No 246
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=48.91 E-value=38 Score=28.59 Aligned_cols=30 Identities=13% Similarity=0.097 Sum_probs=24.6
Q ss_pred eEEEEEecccccCCHHHHHHHHHHHHhCCC
Q 012563 274 SVIYVSFGSVAAINETEFLEIAWGLANSRV 303 (460)
Q Consensus 274 ~~v~vs~GS~~~~~~~~~~~~~~al~~~~~ 303 (460)
..+|+++||....+...++..+.++.+.+.
T Consensus 2 ~~vyl~LGSNlgd~~~~l~~A~~~L~~~~~ 31 (160)
T COG0801 2 TRVYLGLGSNLGDRLKQLRAALAALDALAD 31 (160)
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHhCCC
Confidence 368999999998777778888888887764
No 247
>PLN02470 acetolactate synthase
Probab=48.85 E-value=80 Score=33.08 Aligned_cols=93 Identities=16% Similarity=0.100 Sum_probs=52.2
Q ss_pred EecccccCCH--HHHHHHHHHHHhCCCCEEEEECCCCCCCchhhccCchhHHhhhCCCceEEeccc-----hHH---Hhc
Q 012563 279 SFGSVAAINE--TEFLEIAWGLANSRVPFLWVVRPGLVDGVEWLEALPKGYLEMVDGRGYIVQWAP-----QQQ---VLA 348 (460)
Q Consensus 279 s~GS~~~~~~--~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp-----~~~---lL~ 348 (460)
+|||....+. ..-+.+++.|++.|.+.++.+.+.... .+-+.+.+ .++++.+.--. +++ -..
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~------~l~dal~~--~~~i~~i~~rhE~~A~~~Adgyar~ 73 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGASM------EIHQALTR--SNCIRNVLCRHEQGEVFAAEGYAKA 73 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCcccH------HHHHHHhc--cCCceEEEeccHHHHHHHHHHHHHH
Confidence 4666665332 235668888888888888887765421 11122210 11223221110 110 111
Q ss_pred cCCCcceeeccCch------hhHHHHhhCCCeeecCc
Q 012563 349 HPAVGGFLTHSGWN------STLESICEGVPMICQPC 379 (460)
Q Consensus 349 ~~~~~~~I~HGG~~------s~~eal~~GvP~v~~P~ 379 (460)
...++++++|.|-| .+++|...++|+|++.-
T Consensus 74 tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~G 110 (585)
T PLN02470 74 SGKVGVCIATSGPGATNLVTGLADALLDSVPLVAITG 110 (585)
T ss_pred hCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEec
Confidence 22355599998854 78899999999999853
No 248
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=48.78 E-value=35 Score=29.67 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=28.8
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCC-CCCCCCceEEeCC
Q 012563 31 MLQLGSILYSKGFSITIIHTKFNSPN-SCNYPHFDFHSIS 69 (460)
Q Consensus 31 ~l~lA~~L~~rGh~V~~~~~~~~~~~-~~~~~~~~~~~~~ 69 (460)
.-.|+..|+++||+|++++.....+. ..+..|++.+.+|
T Consensus 23 ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~y~gv~l~~i~ 62 (185)
T PF09314_consen 23 VEELAPRLVSKGIDVTVYCRSDYYPYKEFEYNGVRLVYIP 62 (185)
T ss_pred HHHHHHHHhcCCceEEEEEccCCCCCCCcccCCeEEEEeC
Confidence 45678888888999999998544433 3446788888887
No 249
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.54 E-value=78 Score=26.67 Aligned_cols=75 Identities=20% Similarity=0.184 Sum_probs=52.5
Q ss_pred chhhHHHHhhCCCeeecCcc--cchhhHHHHHHHhhceeEeeCC-ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Q 012563 361 WNSTLESICEGVPMICQPCL--ADQMVNARYVSHVWRVGLHLEG-KLEKKEIETAIRRLMVEAEGQEMRERITCLKKNVD 437 (460)
Q Consensus 361 ~~s~~eal~~GvP~v~~P~~--~DQ~~na~~v~~~lG~G~~~~~-~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~ 437 (460)
.-|+.|--.+|.=.+. |.- -=+..|+++.++ .|.=..+-- ..+.++|.++..+-|.|++.++++..+..+.+..+
T Consensus 87 a~S~~EQasAGLd~Ls-~~E~a~f~~LN~aY~~r-FgfPfI~aVkg~~k~~Il~a~~~Rl~n~~e~E~~tAl~eI~rIA~ 164 (176)
T COG3195 87 AESTSEQASAGLDRLS-PEEFARFTELNAAYVER-FGFPFIIAVKGNTKDTILAAFERRLDNDREQEFATALAEIERIAL 164 (176)
T ss_pred hhhHHHHHhcCcccCC-HHHHHHHHHHHHHHHHh-cCCceEEeecCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 3577777777765443 111 115679999999 798766644 57788888888888888666778887777765544
No 250
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=48.47 E-value=21 Score=30.65 Aligned_cols=71 Identities=17% Similarity=0.252 Sum_probs=40.8
Q ss_pred ccCCCcceeeccCchhhHHHHhhCCCeeecCccc-c----------------------hhhHHHHHHHhhceeEeeCCcc
Q 012563 348 AHPAVGGFLTHSGWNSTLESICEGVPMICQPCLA-D----------------------QMVNARYVSHVWRVGLHLEGKL 404 (460)
Q Consensus 348 ~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~-D----------------------Q~~na~~v~~~lG~G~~~~~~~ 404 (460)
.+..++++|++||...+..... ++|+|-+|..+ | ...+...+.+-+|+-+....--
T Consensus 31 ~~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~~~~~ 109 (176)
T PF06506_consen 31 ESEGADVIISRGGTAELLRKHV-SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIKIYPYD 109 (176)
T ss_dssp TTTT-SEEEEEHHHHHHHHCC--SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEEEEEES
T ss_pred HhcCCeEEEECCHHHHHHHHhC-CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCceEEEEEC
Confidence 3344455999999988888877 99999999853 2 2333455555344443333234
Q ss_pred CHHHHHHHHHHHhcc
Q 012563 405 EKKEIETAIRRLMVE 419 (460)
Q Consensus 405 ~~~~l~~~i~~ll~~ 419 (460)
+.+++...|.++..+
T Consensus 110 ~~~e~~~~i~~~~~~ 124 (176)
T PF06506_consen 110 SEEEIEAAIKQAKAE 124 (176)
T ss_dssp SHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHc
Confidence 677777777777654
No 251
>PRK05920 aromatic acid decarboxylase; Validated
Probab=48.39 E-value=25 Score=31.08 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=30.6
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 012563 14 GRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKF 52 (460)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~ 52 (460)
.+||++--.|+.+= .=...+.+.|.+.||+|.++.++.
T Consensus 3 ~krIllgITGsiaa-~ka~~lvr~L~~~g~~V~vi~T~~ 40 (204)
T PRK05920 3 MKRIVLAITGASGA-IYGVRLLECLLAADYEVHLVISKA 40 (204)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEEEChh
Confidence 46777766666555 688999999999999999999853
No 252
>PRK06179 short chain dehydrogenase; Provisional
Probab=48.33 E-value=85 Score=28.72 Aligned_cols=33 Identities=15% Similarity=0.066 Sum_probs=24.3
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 16 RVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 16 ~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
+.++++. +.|-+ -..+|++|+++|++|+.++..
T Consensus 5 ~~vlVtG-asg~i--G~~~a~~l~~~g~~V~~~~r~ 37 (270)
T PRK06179 5 KVALVTG-ASSGI--GRATAEKLARAGYRVFGTSRN 37 (270)
T ss_pred CEEEEec-CCCHH--HHHHHHHHHHCCCEEEEEeCC
Confidence 3456664 44544 578999999999999988864
No 253
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=48.29 E-value=3.2e+02 Score=27.92 Aligned_cols=153 Identities=17% Similarity=0.090 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHhCCCCEEEEECCCCCCCchhhccCchhHHhhhCCCceEEeccc-hHH--HhccCCCcceeec-----cC
Q 012563 289 TEFLEIAWGLANSRVPFLWVVRPGLVDGVEWLEALPKGYLEMVDGRGYIVQWAP-QQQ--VLAHPAVGGFLTH-----SG 360 (460)
Q Consensus 289 ~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp-~~~--lL~~~~~~~~I~H-----GG 360 (460)
+.+...+.-+-+.+.++++.-.+ . .. ++.--.++.++.++++.+.-|.+ ... +++-+++ ++-- ||
T Consensus 310 dl~~~~i~~~l~~~~~~vilG~g-d-~~---le~~~~~la~~~~~~~~~~i~~~~~la~~i~agaD~--~lmPSrfEPcG 382 (487)
T COG0297 310 DLLLEAIDELLEQGWQLVLLGTG-D-PE---LEEALRALASRHPGRVLVVIGYDEPLAHLIYAGADV--ILMPSRFEPCG 382 (487)
T ss_pred hHHHHHHHHHHHhCceEEEEecC-c-HH---HHHHHHHHHHhcCceEEEEeeecHHHHHHHHhcCCE--EEeCCcCcCCc
Confidence 33444444443445565554433 2 11 22223445556667777775544 333 5555555 6543 44
Q ss_pred chhhHHHHhhCCCeeecCccc------chhhHHHHHHHhhceeEeeCCccCHHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 012563 361 WNSTLESICEGVPMICQPCLA------DQMVNARYVSHVWRVGLHLEGKLEKKEIETAIRRLMVEAEGQEMRERITCLKK 434 (460)
Q Consensus 361 ~~s~~eal~~GvP~v~~P~~~------DQ~~na~~v~~~lG~G~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~ 434 (460)
. |-++|+++|.+-|+.+..+ |-..+. .... |.|..+.. .+++++..++.+.+. -|+.....++.
T Consensus 383 L-~ql~amryGtvpIv~~tGGLadTV~~~~~~~--~~~~-gtGf~f~~-~~~~~l~~al~rA~~-----~y~~~~~~w~~ 452 (487)
T COG0297 383 L-TQLYAMRYGTLPIVRETGGLADTVVDRNEWL--IQGV-GTGFLFLQ-TNPDHLANALRRALV-----LYRAPPLLWRK 452 (487)
T ss_pred H-HHHHHHHcCCcceEcccCCccceecCccchh--ccCc-eeEEEEec-CCHHHHHHHHHHHHH-----HhhCCHHHHHH
Confidence 3 6689999999888888753 322222 5564 88888886 499999999998874 35554454666
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHh
Q 012563 435 NVDACLRQGGSSHQALGRLVDHIL 458 (460)
Q Consensus 435 ~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
..+.++...-|-++...+-++..+
T Consensus 453 ~~~~~m~~d~sw~~sa~~y~~lY~ 476 (487)
T COG0297 453 VQPNAMGADFSWDLSAKEYVELYK 476 (487)
T ss_pred HHHhhcccccCchhHHHHHHHHHH
Confidence 666666656666666666655543
No 254
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=48.03 E-value=24 Score=32.26 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 28 INPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 28 v~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
-.-+-.|+++|+++||+|+++++.
T Consensus 19 gdv~~~L~kaL~~~G~~V~Vi~P~ 42 (245)
T PF08323_consen 19 GDVVGSLPKALAKQGHDVRVIMPK 42 (245)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEE-
T ss_pred hHHHHHHHHHHHhcCCeEEEEEcc
Confidence 344678899999999999999985
No 255
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=47.66 E-value=50 Score=28.38 Aligned_cols=103 Identities=17% Similarity=0.255 Sum_probs=60.6
Q ss_pred CCCeEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEECCCCCCCchhhccCchhHHhhhCCCceEEeccchHHHhccC
Q 012563 271 APKSVIYVSFGSVAAINETEFLEIAWGLANSRVPFLWVVRPGLVDGVEWLEALPKGYLEMVDGRGYIVQWAPQQQVLAHP 350 (460)
Q Consensus 271 ~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~lL~~~ 350 (460)
.++.+..+.+|..+ ..+++-+...+.+++..-.... .. .... . ....+.+-.++++.+
T Consensus 35 ~g~tvgIiG~G~IG-------~~vA~~l~~fG~~V~~~d~~~~--------~~-~~~~--~----~~~~~~~l~ell~~a 92 (178)
T PF02826_consen 35 RGKTVGIIGYGRIG-------RAVARRLKAFGMRVIGYDRSPK--------PE-EGAD--E----FGVEYVSLDELLAQA 92 (178)
T ss_dssp TTSEEEEESTSHHH-------HHHHHHHHHTT-EEEEEESSCH--------HH-HHHH--H----TTEEESSHHHHHHH-
T ss_pred CCCEEEEEEEcCCc-------CeEeeeeecCCceeEEecccCC--------hh-hhcc--c----ccceeeehhhhcchh
Confidence 36788888998877 3455555566777766544332 00 0010 0 123677889999999
Q ss_pred CCcceeeccCchhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEee----CC-ccCHHHHHHHHH
Q 012563 351 AVGGFLTHSGWNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHL----EG-KLEKKEIETAIR 414 (460)
Q Consensus 351 ~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~----~~-~~~~~~l~~~i~ 414 (460)
++ ++.|.-.+. ......|++.++. ++=|..+ ++ -++++.|.++++
T Consensus 93 Di--v~~~~plt~----------------~T~~li~~~~l~~-mk~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 93 DI--VSLHLPLTP----------------ETRGLINAEFLAK-MKPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp SE--EEE-SSSST----------------TTTTSBSHHHHHT-STTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred hh--hhhhhcccc----------------ccceeeeeeeeec-cccceEEEeccchhhhhhhHHHHHHh
Confidence 98 888844321 1356778888888 6755444 12 577777777765
No 256
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=47.53 E-value=1.2e+02 Score=26.04 Aligned_cols=58 Identities=10% Similarity=0.122 Sum_probs=40.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC---CCC---CCCCCCceEEeCCCCC
Q 012563 14 GRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFN---SPN---SCNYPHFDFHSISDGL 72 (460)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~---~~~---~~~~~~~~~~~~~~~~ 72 (460)
+--|.+++..+.|-..-.+.+|-+.+.+|++|.++.--.. ..+ ... .++++.....++
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~-~~~~~~~~g~g~ 68 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEP-HGVEFQVMGTGF 68 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHh-cCcEEEECCCCC
Confidence 3467778889999999999999999999999987642111 111 111 267787777543
No 257
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=47.14 E-value=62 Score=28.51 Aligned_cols=52 Identities=4% Similarity=0.027 Sum_probs=30.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCC--CeEEEEeCCCCCCCC---CCCCCceEEeCC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKG--FSITIIHTKFNSPNS---CNYPHFDFHSIS 69 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rG--h~V~~~~~~~~~~~~---~~~~~~~~~~~~ 69 (460)
|||+|+.++..+- +.++.+.+.+.+ ++|.++.++...... ....|+.+..++
T Consensus 2 ~ki~vl~sg~gs~---~~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~~gIp~~~~~ 58 (200)
T PRK05647 2 KRIVVLASGNGSN---LQAIIDACAAGQLPAEIVAVISDRPDAYGLERAEAAGIPTFVLD 58 (200)
T ss_pred ceEEEEEcCCChh---HHHHHHHHHcCCCCcEEEEEEecCccchHHHHHHHcCCCEEEEC
Confidence 7899999776443 346666676654 778876554322111 223467666654
No 258
>PRK08840 replicative DNA helicase; Provisional
Probab=47.02 E-value=62 Score=32.76 Aligned_cols=40 Identities=13% Similarity=0.116 Sum_probs=32.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHh-CCCeEEEEeCCCCC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYS-KGFSITIIHTKFNS 54 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~-rGh~V~~~~~~~~~ 54 (460)
-=+++..-|+.|-..-.+.+|...+. .|+.|.|++-+...
T Consensus 218 ~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~ 258 (464)
T PRK08840 218 DLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPA 258 (464)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCH
Confidence 34566778899999999999999874 59999999986444
No 259
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=46.76 E-value=1.5e+02 Score=25.01 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=22.2
Q ss_pred cceeeccCch------hhHHHHhhCCCeeecCc
Q 012563 353 GGFLTHSGWN------STLESICEGVPMICQPC 379 (460)
Q Consensus 353 ~~~I~HGG~~------s~~eal~~GvP~v~~P~ 379 (460)
+++++|+|-| .+.+|...++|+|++.-
T Consensus 65 ~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g 97 (164)
T cd07039 65 GVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAG 97 (164)
T ss_pred EEEEECCCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence 4489998854 77899999999999964
No 260
>PRK11519 tyrosine kinase; Provisional
Probab=46.70 E-value=3.9e+02 Score=28.86 Aligned_cols=39 Identities=13% Similarity=0.228 Sum_probs=31.5
Q ss_pred CcEEEEEcC--CCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 012563 14 GRRVILFPL--PFQGHINPMLQLGSILYSKGFSITIIHTKF 52 (460)
Q Consensus 14 ~~~il~~~~--~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~ 52 (460)
+.|++++++ |+-|-..-...||..|+..|++|.++-.+.
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dl 565 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDM 565 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 446666665 467888889999999999999999997653
No 261
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=46.48 E-value=23 Score=33.36 Aligned_cols=31 Identities=16% Similarity=0.304 Sum_probs=26.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHT 50 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~ 50 (460)
|||+|+-.|+.| ..+|..|++.||+|+++..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 688888877776 5678889999999999997
No 262
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=46.16 E-value=28 Score=33.21 Aligned_cols=34 Identities=9% Similarity=-0.026 Sum_probs=24.3
Q ss_pred CceEEEEcC-cc-hHHH-HHhhcCCCeEEEeCccHHH
Q 012563 115 SVACLITDF-LW-QFTH-VADEFKLPTIILQTHSVSG 148 (460)
Q Consensus 115 ~pDlvI~D~-~~-~~~~-~A~~lgiP~v~~~~~~~~~ 148 (460)
.||+||.-. .. ..+. =|.++|||+|.+.-+.+-+
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~dp 188 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNCDP 188 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCCCc
Confidence 588887544 33 4455 8999999999987775443
No 263
>PRK05636 replicative DNA helicase; Provisional
Probab=46.02 E-value=32 Score=35.20 Aligned_cols=40 Identities=13% Similarity=0.094 Sum_probs=31.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHH-hCCCeEEEEeCCCCC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILY-SKGFSITIIHTKFNS 54 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~-~rGh~V~~~~~~~~~ 54 (460)
-=|++...|+.|-..-.+.+|...+ +.|..|.|++-+...
T Consensus 266 ~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~ 306 (505)
T PRK05636 266 QMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSK 306 (505)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCH
Confidence 3457778889999999999998876 458899999875433
No 264
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=45.95 E-value=28 Score=32.94 Aligned_cols=54 Identities=19% Similarity=0.248 Sum_probs=37.5
Q ss_pred ccCCCcceeeccCchhhHHHHhh----CCCeeecCcccchhhHHHHHHHhhceeEeeCCccCHHHHHHHHHHHhcc
Q 012563 348 AHPAVGGFLTHSGWNSTLESICE----GVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEKKEIETAIRRLMVE 419 (460)
Q Consensus 348 ~~~~~~~~I~HGG~~s~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~l~~~i~~ll~~ 419 (460)
..+++ +|+=||-||++.+... ++|++.+... .+|.-. ....+++.+++.+++++
T Consensus 71 ~~~D~--vi~lGGDGT~L~aar~~~~~~~PilGIN~G--------------~lGFL~--~~~~~~~~~~l~~i~~g 128 (306)
T PRK03372 71 DGCEL--VLVLGGDGTILRAAELARAADVPVLGVNLG--------------HVGFLA--EAEAEDLDEAVERVVDR 128 (306)
T ss_pred cCCCE--EEEEcCCHHHHHHHHHhccCCCcEEEEecC--------------CCceec--cCCHHHHHHHHHHHHcC
Confidence 45666 9999999999999764 7888886641 122222 35667777777777765
No 265
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=45.73 E-value=92 Score=31.14 Aligned_cols=42 Identities=12% Similarity=0.167 Sum_probs=35.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHH-hCCCeEEEEeCCCCC
Q 012563 13 NGRRVILFPLPFQGHINPMLQLGSILY-SKGFSITIIHTKFNS 54 (460)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~lA~~L~-~rGh~V~~~~~~~~~ 54 (460)
++..|+++..++.|-..-...||..|. ++|..|.++..+...
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R 140 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYR 140 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 355677888889999999999999997 579999999987543
No 266
>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=45.62 E-value=35 Score=32.19 Aligned_cols=42 Identities=29% Similarity=0.178 Sum_probs=32.5
Q ss_pred cccCCCCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 7 SRISPRNGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 7 ~~~~~~~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
++++..+..+..+++.++.| -.+++|.+++.+|++|++.+.+
T Consensus 25 ~~~~~~k~~~hi~itggS~g---lgl~la~e~~~~ga~Vti~ar~ 66 (331)
T KOG1210|consen 25 SFIVKPKPRRHILITGGSSG---LGLALALECKREGADVTITARS 66 (331)
T ss_pred hhhcccCccceEEEecCcch---hhHHHHHHHHHccCceEEEecc
Confidence 45555565566666667776 3689999999999999999975
No 267
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=45.53 E-value=25 Score=33.35 Aligned_cols=34 Identities=9% Similarity=0.228 Sum_probs=28.7
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 13 NGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
.+|+|+|+-.|..| .++|+.|.++||+|++....
T Consensus 3 ~~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 3 QPKTIAILGAGAWG-----STLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 46899999877666 57999999999999988864
No 268
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=45.39 E-value=54 Score=27.83 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=17.7
Q ss_pred ChHHHHHHHHHHHh-CCCeEEEEeC
Q 012563 27 HINPMLQLGSILYS-KGFSITIIHT 50 (460)
Q Consensus 27 Hv~p~l~lA~~L~~-rGh~V~~~~~ 50 (460)
|.....+|+++|.+ +|.++.+..-
T Consensus 1 H~~aA~Al~eal~~~~~~~~~v~v~ 25 (169)
T PF06925_consen 1 HNSAARALAEALERRRGPDAEVEVV 25 (169)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 77888999999988 5655555443
No 269
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.72 E-value=24 Score=32.77 Aligned_cols=57 Identities=11% Similarity=0.147 Sum_probs=36.3
Q ss_pred HHHhccCCCcceeeccCchhhHHHHhh----CCCeeecCcccchhhHHHHHHHhhceeEeeCCccCHHHHHHHHHHHhc
Q 012563 344 QQVLAHPAVGGFLTHSGWNSTLESICE----GVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEKKEIETAIRRLMV 418 (460)
Q Consensus 344 ~~lL~~~~~~~~I~HGG~~s~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~l~~~i~~ll~ 418 (460)
.++...+++ +|+=||-||++.+.+. ++|++.+-.. .+|.-. ..+.+++.+.+.++++
T Consensus 37 ~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgIn~G--------------~lGFL~--~~~~~~~~~~l~~~~~ 97 (272)
T PRK02231 37 EEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGINRG--------------NLGFLT--DIDPKNAYEQLEACLE 97 (272)
T ss_pred HHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeCC--------------CCcccc--cCCHHHHHHHHHHHHh
Confidence 344445666 9999999999988653 6788876431 122211 3556666666666665
No 270
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.31 E-value=1.2e+02 Score=29.74 Aligned_cols=42 Identities=12% Similarity=0.218 Sum_probs=35.8
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012563 13 NGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNS 54 (460)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~ 54 (460)
++.-|+|+-.-+.|-..-+-.+|..+.++|+.+-+++.+-+.
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFR 141 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFR 141 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccc
Confidence 345677788889999999999999999999999999986443
No 271
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=44.18 E-value=24 Score=34.62 Aligned_cols=45 Identities=20% Similarity=0.351 Sum_probs=29.6
Q ss_pred cccCCCCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 7 SRISPRNGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 7 ~~~~~~~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
.+++...+.-|+|+++|..|+=.-...++.+|+++|+-|..+=+.
T Consensus 92 a~~~~~~~~PvvIFSHGlgg~R~~yS~~~~eLAS~GyVV~aieHr 136 (379)
T PF03403_consen 92 APLSPPGKFPVVIFSHGLGGSRTSYSAICGELASHGYVVAAIEHR 136 (379)
T ss_dssp --B--SS-EEEEEEE--TT--TTTTHHHHHHHHHTT-EEEEE---
T ss_pred cccccCCCCCEEEEeCCCCcchhhHHHHHHHHHhCCeEEEEeccC
Confidence 345555789999999999999999999999999999988887764
No 272
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=43.91 E-value=37 Score=31.29 Aligned_cols=37 Identities=14% Similarity=0.075 Sum_probs=33.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
|.|.+..=|+-|-..-...||..|+++|++|.++=-+
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 7788888889999999999999999999999988655
No 273
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=43.52 E-value=1e+02 Score=30.81 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=20.4
Q ss_pred CceEEEEcCcchHHH-HHhhcCCCeEEE
Q 012563 115 SVACLITDFLWQFTH-VADEFKLPTIIL 141 (460)
Q Consensus 115 ~pDlvI~D~~~~~~~-~A~~lgiP~v~~ 141 (460)
+||++|.+.. .. +|.++|||++.+
T Consensus 372 ~~dliiG~s~---~~~~a~~~~ip~~~~ 396 (429)
T cd03466 372 KIDVLIGNSY---GRRIAEKLGIPLIRI 396 (429)
T ss_pred CCCEEEECch---hHHHHHHcCCCEEEe
Confidence 7999999954 45 999999999864
No 274
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=43.43 E-value=43 Score=31.52 Aligned_cols=39 Identities=10% Similarity=0.072 Sum_probs=35.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFN 53 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~ 53 (460)
|+|.+.-=|+-|-..-...||..|+++|++|.++=-+..
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ 39 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPK 39 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 789999999999999999999999999999999877543
No 275
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=43.37 E-value=1.7e+02 Score=24.08 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=21.2
Q ss_pred ceeeccCc------hhhHHHHhhCCCeeecCc
Q 012563 354 GFLTHSGW------NSTLESICEGVPMICQPC 379 (460)
Q Consensus 354 ~~I~HGG~------~s~~eal~~GvP~v~~P~ 379 (460)
++++|+|- +.+.+|...++|+|++.-
T Consensus 62 v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 62 VVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred EEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 38999774 477889999999999864
No 276
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=42.97 E-value=71 Score=26.99 Aligned_cols=32 Identities=13% Similarity=0.181 Sum_probs=27.3
Q ss_pred cCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 012563 21 PLPFQGHINPMLQLGSILYSKGFSITIIHTKF 52 (460)
Q Consensus 21 ~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~ 52 (460)
+-|+-|-..-...||..|++.|++|.++=.+.
T Consensus 7 ~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~ 38 (169)
T cd02037 7 GKGGVGKSTVAVNLALALAKLGYKVGLLDADI 38 (169)
T ss_pred CCCcCChhHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 34577889999999999999999999997653
No 277
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=42.88 E-value=82 Score=25.99 Aligned_cols=39 Identities=10% Similarity=0.161 Sum_probs=30.3
Q ss_pred CCeEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEECC
Q 012563 272 PKSVIYVSFGSVAAINETEFLEIAWGLANSRVPFLWVVRP 311 (460)
Q Consensus 272 ~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 311 (460)
...+|.|++||......+.++.+++.+. .+.+++++...
T Consensus 50 ~~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~~ 88 (150)
T cd01840 50 LRKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNPH 88 (150)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEECC
Confidence 4678999999999877788888888875 35777776554
No 278
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=42.65 E-value=65 Score=32.53 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=24.1
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 14 GRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
..+++++..+ .-.+.+++.|.+-|-+|..+.+.
T Consensus 326 Gkrv~i~~g~-----~~~~~l~~~l~elGmevv~~~t~ 358 (456)
T TIGR01283 326 GKKAAIYTGG-----VKSWSLVSALQDLGMEVVATGTQ 358 (456)
T ss_pred CCEEEEEcCC-----chHHHHHHHHHHCCCEEEEEeee
Confidence 5677766533 34568888899999999988763
No 279
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=42.51 E-value=41 Score=31.01 Aligned_cols=37 Identities=11% Similarity=0.008 Sum_probs=32.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
|+|.+..=|+-|-..-...||..|+++|++|.++=-+
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D 37 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCD 37 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 6788887778899999999999999999999988554
No 280
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=42.34 E-value=51 Score=26.82 Aligned_cols=57 Identities=11% Similarity=0.110 Sum_probs=43.1
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCCCCC---CCCCCceEEeCC
Q 012563 13 NGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNSPNS---CNYPHFDFHSIS 69 (460)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~~---~~~~~~~~~~~~ 69 (460)
++.||++...++.+|-.----++..|...|++|+........+.. ....+.+++.+.
T Consensus 1 ~~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iS 60 (132)
T TIGR00640 1 RRPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVS 60 (132)
T ss_pred CCCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEc
Confidence 467999999999999999999999999999999998874222221 112456666665
No 281
>PRK07773 replicative DNA helicase; Validated
Probab=41.94 E-value=54 Score=36.34 Aligned_cols=39 Identities=13% Similarity=0.180 Sum_probs=32.0
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEeCCCCC
Q 012563 16 RVILFPLPFQGHINPMLQLGSILYSK-GFSITIIHTKFNS 54 (460)
Q Consensus 16 ~il~~~~~~~GHv~p~l~lA~~L~~r-Gh~V~~~~~~~~~ 54 (460)
=|++..-|+.|-..-.+.+|...+.+ |..|.|++-+...
T Consensus 219 livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~ 258 (886)
T PRK07773 219 LIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSK 258 (886)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCH
Confidence 46777888999999999999998755 8899999875444
No 282
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.47 E-value=41 Score=31.26 Aligned_cols=53 Identities=21% Similarity=0.329 Sum_probs=35.9
Q ss_pred cCCCcceeeccCchhhHHHHhh-CCCeeecCcccchhhHHHHHHHhhceeEeeCCccCHHHHHHHHHHHhcc
Q 012563 349 HPAVGGFLTHSGWNSTLESICE-GVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEKKEIETAIRRLMVE 419 (460)
Q Consensus 349 ~~~~~~~I~HGG~~s~~eal~~-GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~l~~~i~~ll~~ 419 (460)
.+++ +|+=||-||++.+... ..|++.+-.. .+|.-- ..+.+++.+++.+++++
T Consensus 52 ~~D~--vi~lGGDGT~L~a~~~~~~PilGIN~G--------------~lGFL~--~~~~~~~~~~l~~i~~g 105 (271)
T PRK01185 52 NADV--IITIGGDGTILRTLQRAKGPILGINMG--------------GLGFLT--EIEIDEVGSAIKKLIRG 105 (271)
T ss_pred CCCE--EEEEcCcHHHHHHHHHcCCCEEEEECC--------------CCccCc--ccCHHHHHHHHHHHHcC
Confidence 4566 9999999999999884 4566654321 122111 46778888888888875
No 283
>PLN00016 RNA-binding protein; Provisional
Probab=40.94 E-value=38 Score=33.17 Aligned_cols=43 Identities=16% Similarity=0.218 Sum_probs=29.3
Q ss_pred cCCCCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 9 ISPRNGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 9 ~~~~~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
.+...+++|+++..-+.|+=.=...|++.|.++||+|+.++..
T Consensus 47 ~~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 47 AAAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred hcccccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecC
Confidence 3445567888873322233333467889999999999999974
No 284
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=40.87 E-value=31 Score=32.52 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=26.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHT 50 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~ 50 (460)
|||+|+-.|+.| ..+|..|+++||+|+++..
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEec
Confidence 789999888776 4678889999999999987
No 285
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=40.82 E-value=54 Score=28.75 Aligned_cols=38 Identities=13% Similarity=0.222 Sum_probs=30.3
Q ss_pred CcEEEEEcCC--CCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 14 GRRVILFPLP--FQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 14 ~~~il~~~~~--~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
.+|++.++.+ +-|-..-...||..|+++|++|.++=.+
T Consensus 16 ~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D 55 (204)
T TIGR01007 16 EIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGD 55 (204)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 3666666655 5578888999999999999999888664
No 286
>PLN02929 NADH kinase
Probab=40.59 E-value=34 Score=32.21 Aligned_cols=66 Identities=8% Similarity=0.149 Sum_probs=43.6
Q ss_pred ccCCCcceeeccCchhhHHHHh---hCCCeeecCccc------chhhHHHHHHHhhceeEeeCCccCHHHHHHHHHHHhc
Q 012563 348 AHPAVGGFLTHSGWNSTLESIC---EGVPMICQPCLA------DQMVNARYVSHVWRVGLHLEGKLEKKEIETAIRRLMV 418 (460)
Q Consensus 348 ~~~~~~~~I~HGG~~s~~eal~---~GvP~v~~P~~~------DQ~~na~~v~~~lG~G~~~~~~~~~~~l~~~i~~ll~ 418 (460)
..+++ +|+-||-||++.+.. .++|++.+=... .+..|.-. +.. -+|.-- ..+.+++.++|.++++
T Consensus 63 ~~~Dl--vi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~-~~r-~lGfL~--~~~~~~~~~~L~~il~ 136 (301)
T PLN02929 63 RDVDL--VVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD-ARR-STGHLC--AATAEDFEQVLDDVLF 136 (301)
T ss_pred CCCCE--EEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccc-ccc-Cccccc--cCCHHHHHHHHHHHHc
Confidence 34466 999999999999855 468988876542 12333211 111 244333 4678899999999997
Q ss_pred c
Q 012563 419 E 419 (460)
Q Consensus 419 ~ 419 (460)
+
T Consensus 137 g 137 (301)
T PLN02929 137 G 137 (301)
T ss_pred C
Confidence 6
No 287
>PRK04148 hypothetical protein; Provisional
Probab=40.46 E-value=59 Score=26.55 Aligned_cols=37 Identities=11% Similarity=0.301 Sum_probs=27.2
Q ss_pred cCCCCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 9 ISPRNGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 9 ~~~~~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
+...++++|+.+-.| .| ..+|..|++.||+|+.+=..
T Consensus 12 ~~~~~~~kileIG~G-fG-----~~vA~~L~~~G~~ViaIDi~ 48 (134)
T PRK04148 12 YEKGKNKKIVELGIG-FY-----FKVAKKLKESGFDVIVIDIN 48 (134)
T ss_pred cccccCCEEEEEEec-CC-----HHHHHHHHHCCCEEEEEECC
Confidence 344456899999887 33 34688898999999887653
No 288
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=40.35 E-value=53 Score=32.86 Aligned_cols=34 Identities=9% Similarity=-0.050 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 13 NGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
+.||||++-.+++-| +||+.|.+.++...+++.+
T Consensus 3 ~~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~p 36 (426)
T PRK13789 3 VKLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFP 36 (426)
T ss_pred CCcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEEC
Confidence 459999999988776 7899999988655555543
No 289
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=39.89 E-value=3.1e+02 Score=25.35 Aligned_cols=56 Identities=13% Similarity=0.130 Sum_probs=38.3
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCC
Q 012563 13 NGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNSPNSCNYPHFDFHSISDG 71 (460)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (460)
.+|||+++..++...-. .++..|.++|+++.++..............++.+-+|-+
T Consensus 2 ~~~kvaVl~~pG~n~d~---e~~~Al~~aG~~v~~v~~~~~~~~~~~l~~~DgLvipGG 57 (261)
T PRK01175 2 ESIRVAVLRMEGTNCED---ETVKAFRRLGVEPEYVHINDLAAERKSVSDYDCLVIPGG 57 (261)
T ss_pred CCCEEEEEeCCCCCCHH---HHHHHHHHCCCcEEEEeeccccccccchhhCCEEEECCC
Confidence 36899999998776443 667899899999998876322221122345777777755
No 290
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=39.71 E-value=69 Score=25.31 Aligned_cols=37 Identities=16% Similarity=0.090 Sum_probs=33.5
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 012563 16 RVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKF 52 (460)
Q Consensus 16 ~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~ 52 (460)
||++..-++.|-......+|+.|+++|.+|.++-.+.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4788888999999999999999999999999998865
No 291
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.18 E-value=53 Score=30.98 Aligned_cols=53 Identities=17% Similarity=0.208 Sum_probs=37.6
Q ss_pred cCCCcceeeccCchhhHHHHhh----CCCeeecCcccchhhHHHHHHHhhceeEeeCCccCHHHHHHHHHHHhcc
Q 012563 349 HPAVGGFLTHSGWNSTLESICE----GVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEKKEIETAIRRLMVE 419 (460)
Q Consensus 349 ~~~~~~~I~HGG~~s~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~l~~~i~~ll~~ 419 (460)
.+++ +|+=||-||+++++.. ++|++.+... .+|.- ...+.+++.++|.+++++
T Consensus 62 ~~d~--vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G--------------~lGFl--~~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 62 VCDL--VIVVGGDGSLLGAARALARHNVPVLGINRG--------------RLGFL--TDIRPDELEFKLAEVLDG 118 (295)
T ss_pred CCCE--EEEEeCcHHHHHHHHHhcCCCCCEEEEeCC--------------ccccc--ccCCHHHHHHHHHHHHcC
Confidence 4566 9999999999999753 6788876652 12211 146778888888888865
No 292
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=39.14 E-value=46 Score=28.92 Aligned_cols=32 Identities=19% Similarity=0.301 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
|||.++- .||+ -+.+|-.|+++||+|+.+=.+
T Consensus 1 M~I~ViG---lGyv--Gl~~A~~lA~~G~~V~g~D~~ 32 (185)
T PF03721_consen 1 MKIAVIG---LGYV--GLPLAAALAEKGHQVIGVDID 32 (185)
T ss_dssp -EEEEE-----STT--HHHHHHHHHHTTSEEEEE-S-
T ss_pred CEEEEEC---CCcc--hHHHHHHHHhCCCEEEEEeCC
Confidence 7888874 4554 478899999999999998764
No 293
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=39.09 E-value=77 Score=25.38 Aligned_cols=34 Identities=15% Similarity=0.302 Sum_probs=29.1
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 012563 17 VILFPLPFQGHINPMLQLGSILYSKGFSITIIHT 50 (460)
Q Consensus 17 il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~ 50 (460)
++++.+|..+.-.-+..+++.|+++|+.|..+..
T Consensus 1 ~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~ 34 (145)
T PF12695_consen 1 VVVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDY 34 (145)
T ss_dssp EEEEECTTTTTTHHHHHHHHHHHHTTEEEEEESC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 4677788888888899999999999999998843
No 294
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=39.07 E-value=38 Score=31.10 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=28.3
Q ss_pred cEEEEEcCC---CCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 012563 15 RRVILFPLP---FQGHINPMLQLGSILYSKGFSITIIHTKF 52 (460)
Q Consensus 15 ~~il~~~~~---~~GHv~p~l~lA~~L~~rGh~V~~~~~~~ 52 (460)
||..|++.| +.|-=.-...|+..|.+||++|+.+--++
T Consensus 1 tKyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DP 41 (276)
T PF06418_consen 1 TKYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDP 41 (276)
T ss_dssp -EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-
T ss_pred CcEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeecc
Confidence 578888877 55777779999999999999999988653
No 295
>PRK11914 diacylglycerol kinase; Reviewed
Probab=39.02 E-value=89 Score=29.52 Aligned_cols=80 Identities=9% Similarity=0.012 Sum_probs=45.6
Q ss_pred EEEEecccccCCHHHHHHHHHHHHhCCCCEEEEECCCCCCCchhhccCchhHHhhhCCCceEEeccchHHHhccCCCcce
Q 012563 276 IYVSFGSVAAINETEFLEIAWGLANSRVPFLWVVRPGLVDGVEWLEALPKGYLEMVDGRGYIVQWAPQQQVLAHPAVGGF 355 (460)
Q Consensus 276 v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~lL~~~~~~~~ 355 (460)
+.++--|......+.+..+.+.+++.+..+.+....... ....+. ........++ +
T Consensus 13 iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~~--------~~~~~a--------------~~~~~~~~d~--v 68 (306)
T PRK11914 13 VLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDAH--------DARHLV--------------AAALAKGTDA--L 68 (306)
T ss_pred EEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCHH--------HHHHHH--------------HHHHhcCCCE--E
Confidence 444443332223455667788888777765443332210 001110 0111223355 9
Q ss_pred eeccCchhhHHHH----hhCCCeeecCc
Q 012563 356 LTHSGWNSTLESI----CEGVPMICQPC 379 (460)
Q Consensus 356 I~HGG~~s~~eal----~~GvP~v~~P~ 379 (460)
|--||-||+.|++ ..++|+-++|.
T Consensus 69 vv~GGDGTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 69 VVVGGDGVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred EEECCchHHHHHhHHhccCCCcEEEEeC
Confidence 9999999999987 34789999997
No 296
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=38.91 E-value=1.1e+02 Score=20.07 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 012563 423 QEMRERITCLKKNVDACLRQGGSSHQALGRLVDHIL 458 (460)
Q Consensus 423 ~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
+.=.+.++++.+.|. +|=|+-.|+..+.+.|+
T Consensus 11 eeQQ~AvE~Iq~LMa----qGmSsgEAI~~VA~~iR 42 (51)
T PF03701_consen 11 EEQQQAVERIQELMA----QGMSSGEAIAIVAQEIR 42 (51)
T ss_pred HHHHHHHHHHHHHHH----hcccHHHHHHHHHHHHH
Confidence 344566777777777 67888888887777665
No 297
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=38.87 E-value=44 Score=33.84 Aligned_cols=54 Identities=9% Similarity=0.128 Sum_probs=37.3
Q ss_pred ccCCCcceeeccCchhhHHHHhh----CCCeeecCcccchhhHHHHHHHhhceeEeeCCccCHHHHHHHHHHHhcc
Q 012563 348 AHPAVGGFLTHSGWNSTLESICE----GVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEKKEIETAIRRLMVE 419 (460)
Q Consensus 348 ~~~~~~~~I~HGG~~s~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~l~~~i~~ll~~ 419 (460)
..+++ +|+=||-||++.+... ++|++.+-.. .+|..- .++.+++.++|.+++++
T Consensus 261 ~~~Dl--VIsiGGDGTlL~Aar~~~~~~iPILGIN~G--------------~LGFLt--~i~~~e~~~~Le~il~G 318 (508)
T PLN02935 261 TKVDL--VITLGGDGTVLWAASMFKGPVPPVVPFSMG--------------SLGFMT--PFHSEQYRDCLDAILKG 318 (508)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeCC--------------Ccceec--ccCHHHHHHHHHHHHcC
Confidence 34566 9999999999999774 4677665210 133322 46778888888888765
No 298
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.80 E-value=48 Score=30.52 Aligned_cols=53 Identities=17% Similarity=0.227 Sum_probs=34.8
Q ss_pred cCCCcceeeccCchhhHHHHh-hCCCeeecCcccchhhHHHHHHHhhceeEeeCCccCHHHHHHHHHHHhcc
Q 012563 349 HPAVGGFLTHSGWNSTLESIC-EGVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEKKEIETAIRRLMVE 419 (460)
Q Consensus 349 ~~~~~~~I~HGG~~s~~eal~-~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~l~~~i~~ll~~ 419 (460)
.+++ +|+=||-||++.++. +++|++.+-.. .+|.-. ..+.+++.+++.++++.
T Consensus 41 ~~d~--vi~iGGDGT~L~a~~~~~~Pilgin~G--------------~lGfl~--~~~~~~~~~~l~~~~~g 94 (256)
T PRK14075 41 TADL--IIVVGGDGTVLKAAKKVGTPLVGFKAG--------------RLGFLS--SYTLEEIDRFLEDLKNW 94 (256)
T ss_pred CCCE--EEEECCcHHHHHHHHHcCCCEEEEeCC--------------CCcccc--ccCHHHHHHHHHHHHcC
Confidence 3455 999999999999987 46777664421 111111 45667777777777664
No 299
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=38.77 E-value=57 Score=32.74 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=33.1
Q ss_pred cEEEEEcCC---CCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012563 15 RRVILFPLP---FQGHINPMLQLGSILYSKGFSITIIHTKFN 53 (460)
Q Consensus 15 ~~il~~~~~---~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~ 53 (460)
||.+|++.| +.|-=.-..+||..|.+||++||.+--+++
T Consensus 1 ~KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlDPY 42 (533)
T COG0504 1 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPY 42 (533)
T ss_pred CeEEEEeCCeecccccHHHHHHHHHHHHHCCceEEEEecccc
Confidence 577888887 668888899999999999999999886543
No 300
>PRK12342 hypothetical protein; Provisional
Probab=38.73 E-value=38 Score=31.10 Aligned_cols=102 Identities=11% Similarity=0.016 Sum_probs=54.1
Q ss_pred cCCCCCChHH----HHHHHHHHHhCCCeEEEEeCCCCCC--C-C-CC--CCCc-eEEeCCCCCCCCCCCCHHHHHHHHHH
Q 012563 21 PLPFQGHINP----MLQLGSILYSKGFSITIIHTKFNSP--N-S-CN--YPHF-DFHSISDGLTDPSAEDSTTILITLNA 89 (460)
Q Consensus 21 ~~~~~GHv~p----~l~lA~~L~~rGh~V~~~~~~~~~~--~-~-~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (460)
..+...-+|| .+..|-.|++.|.+|++++-..... . . .+ .-|. +-+-+.+.-..+. +....
T Consensus 26 r~~~~~~iNp~D~~AlE~AlrLk~~g~~Vtvls~Gp~~a~~~~l~r~alamGaD~avli~d~~~~g~--D~~at------ 97 (254)
T PRK12342 26 FDNAEAKISQFDLNAIEAASQLATDGDEIAALTVGGSLLQNSKVRKDVLSRGPHSLYLVQDAQLEHA--LPLDT------ 97 (254)
T ss_pred cCCCCccCChhhHHHHHHHHHHhhcCCEEEEEEeCCChHhHHHHHHHHHHcCCCEEEEEecCccCCC--CHHHH------
Confidence 3444455666 5777788887799999988754321 1 1 10 0111 1222222111111 11100
Q ss_pred hcchhHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchH------HH-HHhhcCCCeEEEeCc
Q 012563 90 KCMVPFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQF------TH-VADEFKLPTIILQTH 144 (460)
Q Consensus 90 ~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~------~~-~A~~lgiP~v~~~~~ 144 (460)
...|...++.+ +||+|++...... ++ +|+.||+|++.....
T Consensus 98 --a~~La~~i~~~------------~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 98 --AKALAAAIEKI------------GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred --HHHHHHHHHHh------------CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 11233344443 7999998654433 44 999999999986554
No 301
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=38.55 E-value=64 Score=31.50 Aligned_cols=41 Identities=17% Similarity=0.158 Sum_probs=31.1
Q ss_pred ccccCCCCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 012563 6 ESRISPRNGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHT 50 (460)
Q Consensus 6 ~~~~~~~~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~ 50 (460)
..++=..++|+|+|. |+.|.+ -..|++.|.++||+|+.+..
T Consensus 13 ~~~~~~~~~~~IlVt--GgtGfI--G~~l~~~L~~~G~~V~~v~r 53 (370)
T PLN02695 13 REPYWPSEKLRICIT--GAGGFI--ASHIARRLKAEGHYIIASDW 53 (370)
T ss_pred CCCCCCCCCCEEEEE--CCccHH--HHHHHHHHHhCCCEEEEEEe
Confidence 344556688999877 555554 46789999999999999875
No 302
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=38.31 E-value=2.4e+02 Score=27.20 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCC-eEEEEeC
Q 012563 13 NGRRVILFPLPFQGHINPMLQLGSILYSKGF-SITIIHT 50 (460)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh-~V~~~~~ 50 (460)
++.||+++-.|+.| ..+|+.|++.|+ +++++=.
T Consensus 23 ~~~~VlIiG~GglG-----s~va~~La~aGvg~i~lvD~ 56 (338)
T PRK12475 23 REKHVLIVGAGALG-----AANAEALVRAGIGKLTIADR 56 (338)
T ss_pred cCCcEEEECCCHHH-----HHHHHHHHHcCCCEEEEEcC
Confidence 35689999988877 789999999998 5555543
No 303
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=38.05 E-value=62 Score=32.90 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=24.6
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 14 GRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
..+++++..+ ...+++++.|.+.|-+|..+.+.
T Consensus 324 Gk~vaI~~~~-----~~~~~la~~l~ElGm~v~~~~~~ 356 (475)
T PRK14478 324 GKRVLLYTGG-----VKSWSVVKALQELGMEVVGTSVK 356 (475)
T ss_pred CCEEEEEcCC-----chHHHHHHHHHHCCCEEEEEEEE
Confidence 4677776533 34568888899999999988774
No 304
>PRK05114 hypothetical protein; Provisional
Probab=37.82 E-value=1.1e+02 Score=20.65 Aligned_cols=32 Identities=16% Similarity=0.300 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 012563 423 QEMRERITCLKKNVDACLRQGGSSHQALGRLVDHIL 458 (460)
Q Consensus 423 ~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
+.=.+++.++.+.|. +|=||-.|+..+.+.|+
T Consensus 11 eeQQ~AVErIq~LMa----qGmSsgEAI~~VA~eiR 42 (59)
T PRK05114 11 EQQQKAVERIQELMA----QGMSSGEAIALVAEELR 42 (59)
T ss_pred HHHHHHHHHHHHHHH----ccccHHHHHHHHHHHHH
Confidence 344566677777776 67777777777766664
No 305
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=37.78 E-value=95 Score=29.48 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=23.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
|||+|+..+. -.+...+.|.++||++..+.+.
T Consensus 1 mkIvf~G~~~-----~a~~~L~~L~~~~~~i~~Vvt~ 32 (309)
T PRK00005 1 MRIVFMGTPE-----FAVPSLKALLESGHEVVAVVTQ 32 (309)
T ss_pred CEEEEECCCH-----HHHHHHHHHHHCCCcEEEEECC
Confidence 7888885443 4567778888889998877763
No 306
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=37.75 E-value=42 Score=29.16 Aligned_cols=36 Identities=14% Similarity=0.111 Sum_probs=29.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHh-CCCeEEEEeCC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYS-KGFSITIIHTK 51 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~-rGh~V~~~~~~ 51 (460)
+||++.-.|+.| ..-...++++|.+ .||+|.++.++
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~ 38 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQ 38 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECH
Confidence 467777667777 6669999999999 49999999995
No 307
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.51 E-value=46 Score=30.80 Aligned_cols=53 Identities=9% Similarity=0.201 Sum_probs=34.9
Q ss_pred CCCcceeeccCchhhHHHHhh-----CCCeeecCcccchhhHHHHHHHhhceeEeeCCccCHHHHHHHHHHHhcc
Q 012563 350 PAVGGFLTHSGWNSTLESICE-----GVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEKKEIETAIRRLMVE 419 (460)
Q Consensus 350 ~~~~~~I~HGG~~s~~eal~~-----GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~l~~~i~~ll~~ 419 (460)
+++ +|+=||-||++.++.. .+|++.+-..+ .+|.- ...+.+++.+++.+++++
T Consensus 40 ~D~--vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G-------------~lGFL--~~~~~~~~~~~l~~i~~g 97 (264)
T PRK03501 40 ANI--IVSIGGDGTFLQAVRKTGFREDCLYAGISTKD-------------QLGFY--CDFHIDDLDKMIQAITKE 97 (264)
T ss_pred ccE--EEEECCcHHHHHHHHHhcccCCCeEEeEecCC-------------CCeEc--ccCCHHHHHHHHHHHHcC
Confidence 455 9999999999999874 55666644411 12211 145667777777777765
No 308
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=37.35 E-value=34 Score=29.59 Aligned_cols=34 Identities=15% Similarity=0.278 Sum_probs=26.3
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 17 VILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 17 il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
|++--.|+.|-+.- ..+.+.|.++|++|.++.++
T Consensus 2 illgvtGsiaa~ka-~~lir~L~~~g~~V~vv~T~ 35 (181)
T TIGR00421 2 IVVAMTGASGVIYG-IRLLEVLKEAGVEVHLVISD 35 (181)
T ss_pred EEEEEECHHHHHHH-HHHHHHHHHCCCEEEEEECc
Confidence 44544566665554 88999999999999999995
No 309
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=37.21 E-value=2.9e+02 Score=24.34 Aligned_cols=144 Identities=13% Similarity=0.121 Sum_probs=72.5
Q ss_pred CCeEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEECCCCCCCchhhccCchhHHhhh-CCCceEEeccchHHHhccC
Q 012563 272 PKSVIYVSFGSVAAINETEFLEIAWGLANSRVPFLWVVRPGLVDGVEWLEALPKGYLEMV-DGRGYIVQWAPQQQVLAHP 350 (460)
Q Consensus 272 ~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~vp~~~lL~~~ 350 (460)
+++++.|..|.++. .-+..|.+.+.++.++-.... +.+.+-. ..++....--.+...+..+
T Consensus 9 gk~vlVvGgG~va~-------rk~~~Ll~~ga~VtVvsp~~~-----------~~l~~l~~~~~i~~~~~~~~~~dl~~~ 70 (205)
T TIGR01470 9 GRAVLVVGGGDVAL-------RKARLLLKAGAQLRVIAEELE-----------SELTLLAEQGGITWLARCFDADILEGA 70 (205)
T ss_pred CCeEEEECcCHHHH-------HHHHHHHHCCCEEEEEcCCCC-----------HHHHHHHHcCCEEEEeCCCCHHHhCCc
Confidence 56888887776552 333555557777665433211 1221111 1233333222224456777
Q ss_pred CCcceeeccCchhhHHH-----HhhCCCeee--cCcccchhhHHHHHHHhhceeEeeCC----ccCHHHHHHHHHHHhcc
Q 012563 351 AVGGFLTHSGWNSTLES-----ICEGVPMIC--QPCLADQMVNARYVSHVWRVGLHLEG----KLEKKEIETAIRRLMVE 419 (460)
Q Consensus 351 ~~~~~I~HGG~~s~~ea-----l~~GvP~v~--~P~~~DQ~~na~~v~~~lG~G~~~~~----~~~~~~l~~~i~~ll~~ 419 (460)
.+ +|..-|...+.+. -..|+|+-+ -|-.+| +..-..+.+. ++-+.+.. ..-+..|++.|.+++.+
T Consensus 71 ~l--Vi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~~~g-~l~iaisT~G~sP~la~~lr~~ie~~l~~ 146 (205)
T TIGR01470 71 FL--VIAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIVDRS-PVVVAISSGGAAPVLARLLRERIETLLPP 146 (205)
T ss_pred EE--EEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEEEcC-CEEEEEECCCCCcHHHHHHHHHHHHhcch
Confidence 77 8888887644443 346778733 232222 2222333442 44444432 33446677777777753
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 012563 420 AEGQEMRERITCLKKNVDA 438 (460)
Q Consensus 420 ~~~~~~~~~a~~l~~~~~~ 438 (460)
+ ...+-+...++++.+++
T Consensus 147 ~-~~~~~~~~~~~R~~~k~ 164 (205)
T TIGR01470 147 S-LGDLATLAATWRDAVKK 164 (205)
T ss_pred h-HHHHHHHHHHHHHHHHh
Confidence 1 13455555555555553
No 310
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=36.76 E-value=49 Score=27.86 Aligned_cols=33 Identities=15% Similarity=0.139 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 012563 13 NGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHT 50 (460)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~ 50 (460)
+..+|+++-.|..| ...++.|.+.|++|+++.+
T Consensus 12 ~~~~vlVvGGG~va-----~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 12 HNKVVVIIGGGKIA-----YRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CCCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEcC
Confidence 45778888665443 7789999999999999965
No 311
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=36.72 E-value=52 Score=28.22 Aligned_cols=109 Identities=10% Similarity=0.075 Sum_probs=53.1
Q ss_pred CChHHHHHHHHHH-HhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCC----------CCCCC----------CCCHHHHH
Q 012563 26 GHINPMLQLGSIL-YSKGFSITIIHTKFNSPNSCNYPHFDFHSISDG----------LTDPS----------AEDSTTIL 84 (460)
Q Consensus 26 GHv~p~l~lA~~L-~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~----------~~~~~~~~ 84 (460)
+.+.-.+..|+.| .+.|.+|.+.-.. ......+..++.++.++-+ ..... .......+
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG~-ta~~lr~~~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~ 95 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRGG-TAELLRKHVSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESI 95 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEHH-HHHHHHCC-SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHH
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECCH-HHHHHHHhCCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHH
Confidence 6677788999999 7889999887653 2211111123334433300 00000 00012222
Q ss_pred HHHHHh--------cchhHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH-HHhhcCCCeEEEeCccHH
Q 012563 85 ITLNAK--------CMVPFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH-VADEFKLPTIILQTHSVS 147 (460)
Q Consensus 85 ~~~~~~--------~~~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~-~A~~lgiP~v~~~~~~~~ 147 (460)
..+... ....+...+.++... +.|+||.+. .+. +|+++|+|++.+.++.-+
T Consensus 96 ~~ll~~~i~~~~~~~~~e~~~~i~~~~~~---------G~~viVGg~---~~~~~A~~~gl~~v~i~sg~es 155 (176)
T PF06506_consen 96 EELLGVDIKIYPYDSEEEIEAAIKQAKAE---------GVDVIVGGG---VVCRLARKLGLPGVLIESGEES 155 (176)
T ss_dssp HHHHT-EEEEEEESSHHHHHHHHHHHHHT---------T--EEEESH---HHHHHHHHTTSEEEESS--HHH
T ss_pred HHHhCCceEEEEECCHHHHHHHHHHHHHc---------CCcEEECCH---HHHHHHHHcCCcEEEEEecHHH
Confidence 222111 012344456666554 799999995 346 999999999998775443
No 312
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=36.65 E-value=47 Score=31.08 Aligned_cols=32 Identities=16% Similarity=0.340 Sum_probs=26.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
++|.|+-.|.+| .++|..|.++||+|+++...
T Consensus 1 ~kIafIGLG~MG-----~pmA~~L~~aG~~v~v~~r~ 32 (286)
T COG2084 1 MKIAFIGLGIMG-----SPMAANLLKAGHEVTVYNRT 32 (286)
T ss_pred CeEEEEcCchhh-----HHHHHHHHHCCCEEEEEeCC
Confidence 577888777666 58999999999999999874
No 313
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=36.35 E-value=61 Score=32.17 Aligned_cols=39 Identities=15% Similarity=0.148 Sum_probs=32.3
Q ss_pred CcEEEEEcC--CCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 012563 14 GRRVILFPL--PFQGHINPMLQLGSILYSKGFSITIIHTKF 52 (460)
Q Consensus 14 ~~~il~~~~--~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~ 52 (460)
+|+|+.+.. |+-|-..-.+.||..|+.+|++|.++=.+.
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDp 160 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDP 160 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCC
Confidence 567666665 588999999999999999999999886543
No 314
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=36.29 E-value=42 Score=29.75 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=30.2
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 17 VILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 17 il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
|++..+|+.|-.-....||++|.+++|+|...+.+
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kd 38 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKD 38 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhhhhccccchh
Confidence 45566779999999999999999999999887763
No 315
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=36.11 E-value=70 Score=27.55 Aligned_cols=39 Identities=26% Similarity=0.468 Sum_probs=31.6
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 13 NGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
++..++++-.++.|-..=..++|+++.++|+.|.|+..+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~ 84 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITAS 84 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecC
Confidence 457899999999999999999999999999999998763
No 316
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=35.46 E-value=1.2e+02 Score=29.06 Aligned_cols=42 Identities=12% Similarity=0.140 Sum_probs=36.3
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012563 12 RNGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFN 53 (460)
Q Consensus 12 ~~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~ 53 (460)
.++--|+|+-.-+.|-..-.-.||..|.+.|+.|.++..+-+
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTF 178 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTF 178 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchH
Confidence 345677888888999999999999999999999999998633
No 317
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=35.33 E-value=5.6e+02 Score=27.54 Aligned_cols=35 Identities=23% Similarity=0.211 Sum_probs=28.4
Q ss_pred EEEEEcCC-CCCChHHHHHHHHHHHhCCCeEEEEeC
Q 012563 16 RVILFPLP-FQGHINPMLQLGSILYSKGFSITIIHT 50 (460)
Q Consensus 16 ~il~~~~~-~~GHv~p~l~lA~~L~~rGh~V~~~~~ 50 (460)
.|.+.+.. ..|-..-.+.|++.|.++|.+|-++=+
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKP 39 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKP 39 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCC
Confidence 45555444 568999999999999999999999875
No 318
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=35.19 E-value=55 Score=30.14 Aligned_cols=30 Identities=10% Similarity=0.048 Sum_probs=22.9
Q ss_pred CceEEEEcCcch------HHH-HHhhcCCCeEEEeCc
Q 012563 115 SVACLITDFLWQ------FTH-VADEFKLPTIILQTH 144 (460)
Q Consensus 115 ~pDlvI~D~~~~------~~~-~A~~lgiP~v~~~~~ 144 (460)
.||+|++..... .++ +|+.||+|++.+...
T Consensus 112 ~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 112 GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 799999865442 344 999999999986554
No 319
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=35.15 E-value=59 Score=28.78 Aligned_cols=34 Identities=12% Similarity=-0.048 Sum_probs=24.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFN 53 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~ 53 (460)
|+++|+-.|-. -..||+.|++.||+|++.+....
T Consensus 2 ~~~~i~GtGni-----G~alA~~~a~ag~eV~igs~r~~ 35 (211)
T COG2085 2 MIIAIIGTGNI-----GSALALRLAKAGHEVIIGSSRGP 35 (211)
T ss_pred cEEEEeccChH-----HHHHHHHHHhCCCeEEEecCCCh
Confidence 45555544433 36899999999999999987433
No 320
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=35.15 E-value=50 Score=32.80 Aligned_cols=32 Identities=22% Similarity=0.425 Sum_probs=26.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
|+|.|+-.|..| +.+|..|+++||+|+++-..
T Consensus 1 mkI~vIGlG~~G-----~~lA~~La~~G~~V~~~d~~ 32 (411)
T TIGR03026 1 MKIAVIGLGYVG-----LPLAALLADLGHEVTGVDID 32 (411)
T ss_pred CEEEEECCCchh-----HHHHHHHHhcCCeEEEEECC
Confidence 688888776666 68899999999999988653
No 321
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=34.99 E-value=3.9e+02 Score=26.49 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 14 GRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
..+++++..+. + ...+++.|.+.|.+|..+...
T Consensus 287 gkrv~i~~~~~--~---~~~la~~l~elGm~v~~~~~~ 319 (410)
T cd01968 287 GKKAALYTGGV--K---SWSLVSALQDLGMEVVATGTQ 319 (410)
T ss_pred CCEEEEEcCCc--h---HHHHHHHHHHCCCEEEEEecc
Confidence 45777655333 2 377888888899999888763
No 322
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=34.94 E-value=48 Score=28.59 Aligned_cols=36 Identities=19% Similarity=0.233 Sum_probs=27.3
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 012563 16 RVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKF 52 (460)
Q Consensus 16 ~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~ 52 (460)
||++.-.|+.| ..-...+.+.|.++|++|.++.++.
T Consensus 2 ~I~lgvtGs~~-a~~~~~ll~~L~~~g~~V~vi~T~~ 37 (177)
T TIGR02113 2 KILLAVTGSIA-AYKAADLTSQLTKLGYDVTVLMTQA 37 (177)
T ss_pred EEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEEChH
Confidence 56665556554 4456699999999999999999853
No 323
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=34.88 E-value=1.5e+02 Score=29.02 Aligned_cols=12 Identities=42% Similarity=0.808 Sum_probs=9.6
Q ss_pred hCCCeeecCccc
Q 012563 370 EGVPMICQPCLA 381 (460)
Q Consensus 370 ~GvP~v~~P~~~ 381 (460)
.++|+|++|...
T Consensus 121 ~~~P~i~IPTta 132 (375)
T cd08194 121 PGLPLIAIPTTA 132 (375)
T ss_pred CCCCEEEECCCC
Confidence 368999999853
No 324
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=34.69 E-value=1.7e+02 Score=27.30 Aligned_cols=28 Identities=14% Similarity=0.244 Sum_probs=20.6
Q ss_pred CCCcceeeccCchhhHHHHhh-----CCCee-ecCc
Q 012563 350 PAVGGFLTHSGWNSTLESICE-----GVPMI-CQPC 379 (460)
Q Consensus 350 ~~~~~~I~HGG~~s~~eal~~-----GvP~v-~~P~ 379 (460)
+++ +|.-||-||+.|++.. ..|.+ ++|.
T Consensus 58 ~d~--ivv~GGDGTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 58 VDT--VIAGGGDGTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred CCE--EEEECCCChHHHHHHHHhcCCCCCcEEEEcC
Confidence 455 9999999999996643 34445 4997
No 325
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.67 E-value=1.2e+02 Score=22.60 Aligned_cols=48 Identities=8% Similarity=0.178 Sum_probs=27.9
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHh
Q 012563 408 EIETAIRRLMVEAEGQEMRERITCLKKNVDACLRQ-GGSSHQALGRLVDHIL 458 (460)
Q Consensus 408 ~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~~~~~-~g~~~~~~~~~~~~~~ 458 (460)
+....+.++++| .+.-.|.++.++..+.++.+ +.+........+-.++
T Consensus 17 q~~~lL~~Ii~D---ttVPRNIRraA~~a~e~L~~e~e~p~vRaAtaIsiLe 65 (93)
T COG1698 17 QVMQLLDEIIQD---TTVPRNIRRAAEEAKEALNNEGESPAVRAATAISILE 65 (93)
T ss_pred HHHHHHHHHHcc---ccccHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHH
Confidence 344455666777 56666666666666665555 5555555555555444
No 326
>PRK13768 GTPase; Provisional
Probab=34.52 E-value=1.3e+02 Score=27.58 Aligned_cols=38 Identities=16% Similarity=0.214 Sum_probs=32.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKF 52 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~ 52 (460)
+.+++...++.|-..-+..++..|.++|++|.++.-+.
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 45667777788999999999999999999999998754
No 327
>PRK13054 lipid kinase; Reviewed
Probab=34.16 E-value=2.2e+02 Score=26.76 Aligned_cols=30 Identities=13% Similarity=-0.013 Sum_probs=23.6
Q ss_pred cCCCcceeeccCchhhHHHHhh------C--CCeeecCcc
Q 012563 349 HPAVGGFLTHSGWNSTLESICE------G--VPMICQPCL 380 (460)
Q Consensus 349 ~~~~~~~I~HGG~~s~~eal~~------G--vP~v~~P~~ 380 (460)
..++ +|.-||-||+.|++.. + +|+-++|..
T Consensus 56 ~~d~--vvv~GGDGTl~evv~~l~~~~~~~~~~lgiiP~G 93 (300)
T PRK13054 56 GVAT--VIAGGGDGTINEVATALAQLEGDARPALGILPLG 93 (300)
T ss_pred CCCE--EEEECCccHHHHHHHHHHhhccCCCCcEEEEeCC
Confidence 3455 9999999999998755 3 588999973
No 328
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=34.13 E-value=85 Score=26.57 Aligned_cols=27 Identities=22% Similarity=0.398 Sum_probs=21.9
Q ss_pred cceeeccCch------hhHHHHhhCCCeeecCc
Q 012563 353 GGFLTHSGWN------STLESICEGVPMICQPC 379 (460)
Q Consensus 353 ~~~I~HGG~~------s~~eal~~GvP~v~~P~ 379 (460)
+++++|+|-| .+.||...++|+|++.-
T Consensus 62 gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 94 (162)
T cd07037 62 VAVVCTSGTAVANLLPAVVEAYYSGVPLLVLTA 94 (162)
T ss_pred EEEEECCchHHHHHhHHHHHHHhcCCCEEEEEC
Confidence 3388998854 67799999999999954
No 329
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=34.03 E-value=1.4e+02 Score=30.52 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=25.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSK--GFSITIIHT 50 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~r--Gh~V~~~~~ 50 (460)
||||++-.++..| +|+..|++. |++|.++-.
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g 33 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSS 33 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEEC
Confidence 7999998888777 577788776 999988854
No 330
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=33.84 E-value=69 Score=28.23 Aligned_cols=39 Identities=26% Similarity=0.261 Sum_probs=31.4
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 012563 12 RNGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHT 50 (460)
Q Consensus 12 ~~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~ 50 (460)
+.+++|.+=..|+-|-.+-|+.=|++|.++|.+|++-.-
T Consensus 3 rGrLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~v 41 (211)
T PF02702_consen 3 RGRLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYV 41 (211)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE-
T ss_pred CccEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 346899999999999999999999999999999999765
No 331
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=33.61 E-value=42 Score=33.86 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=25.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
|||+|+-.|- --++-|.+|+++||+||++=..
T Consensus 1 ~rVai~GaG~-----AgL~~a~~La~~g~~vt~~ea~ 32 (485)
T COG3349 1 MRVAIAGAGL-----AGLAAAYELADAGYDVTLYEAR 32 (485)
T ss_pred CeEEEEcccH-----HHHHHHHHHHhCCCceEEEecc
Confidence 6777776553 3478899999999999998763
No 332
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=33.58 E-value=98 Score=26.66 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=24.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCe--EEEEeC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFS--ITIIHT 50 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~--V~~~~~ 50 (460)
|||+|+.+++. ..+..+.+.|.+++|. +..+.+
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit 35 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVIT 35 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEE
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEec
Confidence 79999976555 5577778899999997 555554
No 333
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=33.50 E-value=47 Score=32.76 Aligned_cols=39 Identities=15% Similarity=0.148 Sum_probs=31.1
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 012563 13 NGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKF 52 (460)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~ 52 (460)
+++||++.-.|+.|= .-...+.+.|.+.|++|.++.++.
T Consensus 2 ~~k~IllgiTGSiaa-~~~~~ll~~L~~~g~~V~vv~T~~ 40 (390)
T TIGR00521 2 ENKKILLGVTGGIAA-YKTVELVRELVRQGAEVKVIMTEA 40 (390)
T ss_pred CCCEEEEEEeCHHHH-HHHHHHHHHHHhCCCEEEEEECHh
Confidence 356777777676665 558999999999999999999853
No 334
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=33.45 E-value=2.9e+02 Score=23.19 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=21.7
Q ss_pred CcceeeccCch------hhHHHHhhCCCeeecCc
Q 012563 352 VGGFLTHSGWN------STLESICEGVPMICQPC 379 (460)
Q Consensus 352 ~~~~I~HGG~~------s~~eal~~GvP~v~~P~ 379 (460)
.++++.|+|-| .+.+|...++|+|++.-
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 34488887754 67789999999999964
No 335
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=33.44 E-value=1.6e+02 Score=25.30 Aligned_cols=58 Identities=12% Similarity=0.167 Sum_probs=31.8
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCCCC------CCCCCCceEEeCCCC
Q 012563 14 GRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNSPN------SCNYPHFDFHSISDG 71 (460)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~------~~~~~~~~~~~~~~~ 71 (460)
+-.|-+++..+.|-....+.+|-+-+-+|.+|.++.--..... ....+++.+.....+
T Consensus 3 ~G~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~~l~~~~~~~~g~~ 66 (172)
T PF02572_consen 3 RGLIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGELKALKKLPNVEIERFGKG 66 (172)
T ss_dssp ---EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HHHHHHGGGT--EEEE--TT
T ss_pred CcEEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHHHhCCeEEEEEcCCc
Confidence 3457788888999998888888777778889988875322111 122345777777653
No 336
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=33.38 E-value=2.3e+02 Score=24.66 Aligned_cols=52 Identities=6% Similarity=0.058 Sum_probs=29.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCC--eEEEEeCCCCCCC---CCCCCCceEEeCC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGF--SITIIHTKFNSPN---SCNYPHFDFHSIS 69 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh--~V~~~~~~~~~~~---~~~~~~~~~~~~~ 69 (460)
|||+++.++..+- +.++.+.+.+.++ +|.++.++..... .....|+.++.++
T Consensus 1 ~riail~sg~gs~---~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~~gip~~~~~ 57 (190)
T TIGR00639 1 KRIVVLISGNGSN---LQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQAGIPTFVLS 57 (190)
T ss_pred CeEEEEEcCCChh---HHHHHHHHHcCCCCceEEEEEECCccchHHHHHHHcCCCEEEEC
Confidence 6888888765554 4466666776655 6776655432111 1123466666543
No 337
>PRK06988 putative formyltransferase; Provisional
Probab=32.93 E-value=1.4e+02 Score=28.34 Aligned_cols=32 Identities=16% Similarity=0.345 Sum_probs=24.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
|||+|+..+. ..+...+.|.++||+|..+.+.
T Consensus 3 mkIvf~Gs~~-----~a~~~L~~L~~~~~~i~~Vvt~ 34 (312)
T PRK06988 3 PRAVVFAYHN-----VGVRCLQVLLARGVDVALVVTH 34 (312)
T ss_pred cEEEEEeCcH-----HHHHHHHHHHhCCCCEEEEEcC
Confidence 7899986543 3456667788889999888774
No 338
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=32.91 E-value=33 Score=31.34 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=22.7
Q ss_pred CCCcceeeccCchhhHHHHhh----CCCeeecCc
Q 012563 350 PAVGGFLTHSGWNSTLESICE----GVPMICQPC 379 (460)
Q Consensus 350 ~~~~~~I~HGG~~s~~eal~~----GvP~v~~P~ 379 (460)
+++ +|+-||-||++.+++. ++|++.+-.
T Consensus 26 ~Dl--vi~iGGDGTlL~a~~~~~~~~~PvlGIN~ 57 (246)
T PRK04761 26 ADV--IVALGGDGFMLQTLHRYMNSGKPVYGMNR 57 (246)
T ss_pred CCE--EEEECCCHHHHHHHHHhcCCCCeEEEEeC
Confidence 455 9999999999988664 678887654
No 339
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=32.86 E-value=2.9e+02 Score=26.30 Aligned_cols=100 Identities=13% Similarity=0.196 Sum_probs=53.6
Q ss_pred CcEEEEEcCCCCC---Ch--HHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCCCCCHHHHHHHHH
Q 012563 14 GRRVILFPLPFQG---HI--NPMLQLGSILYSKGFSITIIHTKFNSPNSCNYPHFDFHSISDGLTDPSAEDSTTILITLN 88 (460)
Q Consensus 14 ~~~il~~~~~~~G---Hv--~p~l~lA~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (460)
+.-|++.|..+.| +| .-+.+|++.|.++|..|++++++...+... .+.- ..+..... +
T Consensus 174 ~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~---~i~~-~~~~~~~~------------l- 236 (334)
T TIGR02195 174 RPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGN---EIEA-LLPGELRN------------L- 236 (334)
T ss_pred CCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHH---HHHH-hCCccccc------------C-
Confidence 3456666644333 22 258899999988899998888753221111 0100 00000000 0
Q ss_pred HhcchhHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH-HHhhcCCCeEEEeCc
Q 012563 89 AKCMVPFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH-VADEFKLPTIILQTH 144 (460)
Q Consensus 89 ~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~-~A~~lgiP~v~~~~~ 144 (460)
.-...+.+...-+ + +-|++|+.. .... +|..+|+|+|.++..
T Consensus 237 -~g~~sL~el~ali-~----------~a~l~I~~D--SGp~HlAaA~~~P~i~lfG~ 279 (334)
T TIGR02195 237 -AGETSLDEAVDLI-A----------LAKAVVTND--SGLMHVAAALNRPLVALYGS 279 (334)
T ss_pred -CCCCCHHHHHHHH-H----------hCCEEEeeC--CHHHHHHHHcCCCEEEEECC
Confidence 0001133333333 2 468999885 4455 999999999987553
No 340
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=32.77 E-value=73 Score=25.07 Aligned_cols=34 Identities=15% Similarity=0.010 Sum_probs=30.2
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 012563 17 VILFPLPFQGHINPMLQLGSILYSKGFSITIIHT 50 (460)
Q Consensus 17 il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~ 50 (460)
++..+.++..|-....-++..|.++|++|.+...
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~ 35 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGV 35 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCC
Confidence 5677778999999999999999999999999865
No 341
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=32.69 E-value=45 Score=28.11 Aligned_cols=31 Identities=16% Similarity=0.276 Sum_probs=23.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHT 50 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~ 50 (460)
|+|.|+-.|..| ..+|+.|.++||+|+++-.
T Consensus 2 ~~Ig~IGlG~mG-----~~~a~~L~~~g~~v~~~d~ 32 (163)
T PF03446_consen 2 MKIGFIGLGNMG-----SAMARNLAKAGYEVTVYDR 32 (163)
T ss_dssp BEEEEE--SHHH-----HHHHHHHHHTTTEEEEEES
T ss_pred CEEEEEchHHHH-----HHHHHHHHhcCCeEEeecc
Confidence 678888776555 6899999999999998764
No 342
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=32.69 E-value=1.1e+02 Score=26.02 Aligned_cols=31 Identities=16% Similarity=0.242 Sum_probs=22.1
Q ss_pred CCCeEEEEEecccccCCHHHHHHHHHHHHhC
Q 012563 271 APKSVIYVSFGSVAAINETEFLEIAWGLANS 301 (460)
Q Consensus 271 ~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~ 301 (460)
+.+..+|+++||....+.+.+...+..+...
T Consensus 5 ~~~~~v~i~LGSNlg~~~~~l~~A~~~L~~~ 35 (163)
T PRK14092 5 PASALAYVGLGANLGDAAATLRSVLAELAAA 35 (163)
T ss_pred CcCCEEEEEecCchHhHHHHHHHHHHHHHhC
Confidence 4567799999998865555666666666654
No 343
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=32.52 E-value=47 Score=31.94 Aligned_cols=32 Identities=25% Similarity=0.319 Sum_probs=27.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
|||+|+-.|..| ..+|..|+++||+|+++..+
T Consensus 3 mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecH
Confidence 789999888777 46789999999999999864
No 344
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=32.50 E-value=6.1e+02 Score=26.60 Aligned_cols=86 Identities=7% Similarity=0.157 Sum_probs=49.4
Q ss_pred CcceeeccCchhhHHHHhh---CCCeeecCcccc--hhhHH-HHHHHhh--ceeEee---CCccCHHHHHHHHHHHhccc
Q 012563 352 VGGFLTHSGWNSTLESICE---GVPMICQPCLAD--QMVNA-RYVSHVW--RVGLHL---EGKLEKKEIETAIRRLMVEA 420 (460)
Q Consensus 352 ~~~~I~HGG~~s~~eal~~---GvP~v~~P~~~D--Q~~na-~~v~~~l--G~G~~~---~~~~~~~~l~~~i~~ll~~~ 420 (460)
+++||.=.|.-.-+-.+.+ -+|+|.+|.... -...+ --+.+ + |+.+.. +...+...++..|- -+.|
T Consensus 466 ~~v~i~~ag~~~~l~~~~a~~t~~pvi~vp~~~~~~~g~~~l~s~~~-~p~g~pv~~v~i~~~~~aa~~a~~i~-~~~~- 542 (577)
T PLN02948 466 LQVIIAGAGGAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIVQ-MPRGVPVATVAIGNATNAGLLAVRML-GASD- 542 (577)
T ss_pred CCEEEEEcCccccchHHHhhccCCCEEEcCCCCCCCCcHHHHHHHhc-CCCCCeEEEEecCChHHHHHHHHHHH-hcCC-
Confidence 4459998886544444444 469999999532 12222 22334 4 532221 22456666655543 2345
Q ss_pred hHHHHHHHHHHHHHHHHHHHhc
Q 012563 421 EGQEMRERITCLKKNVDACLRQ 442 (460)
Q Consensus 421 ~~~~~~~~a~~l~~~~~~~~~~ 442 (460)
..++++.+.+++.+++.+.+
T Consensus 543 --~~~~~~~~~~~~~~~~~~~~ 562 (577)
T PLN02948 543 --PDLLDKMEAYQEDMRDMVLE 562 (577)
T ss_pred --HHHHHHHHHHHHHHHHHHHh
Confidence 68888888888888865443
No 345
>CHL00194 ycf39 Ycf39; Provisional
Probab=32.43 E-value=85 Score=29.73 Aligned_cols=33 Identities=9% Similarity=0.211 Sum_probs=24.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
|+|+++ |+.|.+ -..|+++|.++||+|+.++..
T Consensus 1 MkIlVt--GatG~i--G~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 1 MSLLVI--GATGTL--GRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred CEEEEE--CCCcHH--HHHHHHHHHHCCCeEEEEEcC
Confidence 566665 556644 456888999999999999864
No 346
>PRK13337 putative lipid kinase; Reviewed
Probab=32.31 E-value=2e+02 Score=27.16 Aligned_cols=27 Identities=11% Similarity=-0.048 Sum_probs=21.8
Q ss_pred ceeeccCchhhHHHHhh------CCCeeecCcc
Q 012563 354 GFLTHSGWNSTLESICE------GVPMICQPCL 380 (460)
Q Consensus 354 ~~I~HGG~~s~~eal~~------GvP~v~~P~~ 380 (460)
.+|.-||-||+.|++.. ..|+-++|..
T Consensus 60 ~vvv~GGDGTl~~vv~gl~~~~~~~~lgiiP~G 92 (304)
T PRK13337 60 LVIAAGGDGTLNEVVNGIAEKENRPKLGIIPVG 92 (304)
T ss_pred EEEEEcCCCHHHHHHHHHhhCCCCCcEEEECCc
Confidence 39999999999998862 3478889973
No 347
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=32.30 E-value=60 Score=31.04 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=28.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 14 GRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
.|||+|+-.|..| ..+|..|+++||+|+++...
T Consensus 4 ~m~I~iIG~G~mG-----~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 4 GMRVAVLGAGAWG-----TALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCeEEEECcCHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 5899999888777 57899999999999999874
No 348
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=32.28 E-value=54 Score=29.50 Aligned_cols=32 Identities=13% Similarity=0.191 Sum_probs=24.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
|+++++-.|-. -..+|+.|.+.||+|+.+-.+
T Consensus 1 m~iiIiG~G~v-----G~~va~~L~~~g~~Vv~Id~d 32 (225)
T COG0569 1 MKIIIIGAGRV-----GRSVARELSEEGHNVVLIDRD 32 (225)
T ss_pred CEEEEECCcHH-----HHHHHHHHHhCCCceEEEEcC
Confidence 55666655533 378999999999999999875
No 349
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=32.12 E-value=32 Score=31.12 Aligned_cols=33 Identities=15% Similarity=0.191 Sum_probs=23.4
Q ss_pred ceEEEE-cCcc-hHHH-HHhhcCCCeEEEeCccHHH
Q 012563 116 VACLIT-DFLW-QFTH-VADEFKLPTIILQTHSVSG 148 (460)
Q Consensus 116 pDlvI~-D~~~-~~~~-~A~~lgiP~v~~~~~~~~~ 148 (460)
||++++ |+.. -.+. -|.++|||.|.+.-+.+-+
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~dp 192 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNCDP 192 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCCCC
Confidence 888764 5443 3344 8999999999987774444
No 350
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=31.93 E-value=61 Score=27.81 Aligned_cols=29 Identities=10% Similarity=0.087 Sum_probs=20.8
Q ss_pred CceEEEEcCcchH--HH-HHhhcCCCeEEEeC
Q 012563 115 SVACLITDFLWQF--TH-VADEFKLPTIILQT 143 (460)
Q Consensus 115 ~pDlvI~D~~~~~--~~-~A~~lgiP~v~~~~ 143 (460)
+||+||....... .. --+..|||++.+..
T Consensus 69 ~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~ 100 (186)
T cd01141 69 KPDLVILYGGFQAQTILDKLEQLGIPVLYVNE 100 (186)
T ss_pred CCCEEEEecCCCchhHHHHHHHcCCCEEEeCC
Confidence 8999998654433 22 55789999988753
No 351
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=31.81 E-value=1.1e+02 Score=27.63 Aligned_cols=43 Identities=26% Similarity=0.332 Sum_probs=34.6
Q ss_pred cEEEEEcC--CCCCChHHHHHHHHHHHhCCCeEEEEeCCCCCCCC
Q 012563 15 RRVILFPL--PFQGHINPMLQLGSILYSKGFSITIIHTKFNSPNS 57 (460)
Q Consensus 15 ~~il~~~~--~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~~ 57 (460)
|.|+.++. |+-|-..-++.||.+|+++|-.|+++=.+++.+..
T Consensus 1 M~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~ 45 (231)
T PF07015_consen 1 MPVITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLA 45 (231)
T ss_pred CCeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHH
Confidence 44444444 47899999999999999999999999998776553
No 352
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=31.67 E-value=1.2e+02 Score=28.56 Aligned_cols=107 Identities=10% Similarity=0.016 Sum_probs=0.0
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC-CCCCCCCCCCCceEEeCCCCCCCCCCCCHHHHHHHHHHh
Q 012563 12 RNGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK-FNSPNSCNYPHFDFHSISDGLTDPSAEDSTTILITLNAK 90 (460)
Q Consensus 12 ~~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (460)
.+++||+++.++. |+-.-.+-=+-.-.+-+++|..+.+. ......+...|+.++.++...... ..
T Consensus 87 ~~~~ri~vl~Sg~-gsnl~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~gIp~~~~~~~~~~~-------------~~ 152 (286)
T PRK06027 87 AERKRVVILVSKE-DHCLGDLLWRWRSGELPVEIAAVISNHDDLRSLVERFGIPFHHVPVTKETK-------------AE 152 (286)
T ss_pred ccCcEEEEEEcCC-CCCHHHHHHHHHcCCCCcEEEEEEEcChhHHHHHHHhCCCEEEeccCcccc-------------ch
Q ss_pred cchhHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH--HHhhcCCCeEEEeCc
Q 012563 91 CMVPFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH--VADEFKLPTIILQTH 144 (460)
Q Consensus 91 ~~~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~--~A~~lgiP~v~~~~~ 144 (460)
....+.+.++++ +||+||.-.+...-. +-..+.-.++-+.++
T Consensus 153 ~~~~~~~~l~~~------------~~Dlivlagy~~il~~~~l~~~~~~iiNiHpS 196 (286)
T PRK06027 153 AEARLLELIDEY------------QPDLVVLARYMQILSPDFVARFPGRIINIHHS 196 (286)
T ss_pred hHHHHHHHHHHh------------CCCEEEEecchhhcCHHHHhhccCCceecCcc
No 353
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=31.59 E-value=84 Score=26.31 Aligned_cols=36 Identities=31% Similarity=0.465 Sum_probs=28.6
Q ss_pred cEEEEEcCC-------CCCChHHHHHHHHHHHhCCCeEEEEeC
Q 012563 15 RRVILFPLP-------FQGHINPMLQLGSILYSKGFSITIIHT 50 (460)
Q Consensus 15 ~~il~~~~~-------~~GHv~p~l~lA~~L~~rGh~V~~~~~ 50 (460)
.|++++-.| +..|+--++.=|++|+++|.+.+++.+
T Consensus 44 KKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvS 86 (171)
T KOG0541|consen 44 KKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVS 86 (171)
T ss_pred ceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEe
Confidence 455555444 678999999999999999988777765
No 354
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.55 E-value=62 Score=33.77 Aligned_cols=53 Identities=25% Similarity=0.373 Sum_probs=36.1
Q ss_pred cCCCcceeeccCchhhHHHHhh----CCCeeecCcccchhhHHHHHHHhhceeEeeCCccCHHHHHHHHHHHhcc
Q 012563 349 HPAVGGFLTHSGWNSTLESICE----GVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEKKEIETAIRRLMVE 419 (460)
Q Consensus 349 ~~~~~~~I~HGG~~s~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~l~~~i~~ll~~ 419 (460)
.+++ +|+-||-||++.+... ++|++.+-+.. +|. +. ..+.+++.+++.+++++
T Consensus 348 ~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGin~G~--------------lGF-L~-~~~~~~~~~~l~~~~~g 404 (569)
T PRK14076 348 EISH--IISIGGDGTVLRASKLVNGEEIPIICINMGT--------------VGF-LT-EFSKEEIFKAIDSIISG 404 (569)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcCCC--------------CCc-Cc-ccCHHHHHHHHHHHHcC
Confidence 3455 9999999999999774 77888755421 111 11 45667777777777765
No 355
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=31.51 E-value=53 Score=31.39 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=26.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
|||.|+-.|+.| ..+|..|++.||+|+++...
T Consensus 1 MkI~IiGaGa~G-----~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 1 MKISILGAGSFG-----TAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred CEEEEECcCHHH-----HHHHHHHHHCCCeEEEEecC
Confidence 678888888776 46889999999999999874
No 356
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=31.48 E-value=1e+02 Score=28.87 Aligned_cols=28 Identities=18% Similarity=0.459 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCCC
Q 012563 286 INETEFLEIAWGLANSRVPFLWVVRPGL 313 (460)
Q Consensus 286 ~~~~~~~~~~~al~~~~~~~i~~~~~~~ 313 (460)
...+....+.+|+.+.+.+.||...++.
T Consensus 46 s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ 73 (282)
T cd07025 46 TDEERAADLNAAFADPEIKAIWCARGGY 73 (282)
T ss_pred CHHHHHHHHHHHhhCCCCCEEEEcCCcC
Confidence 4567788899999999999999988764
No 357
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=31.30 E-value=95 Score=25.37 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=28.2
Q ss_pred EEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 012563 19 LFPLPFQGHINPMLQLGSILYSKGFSITIIHT 50 (460)
Q Consensus 19 ~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~ 50 (460)
++.++..--+.|..-++...++.|++|+++.|
T Consensus 8 Il~SG~~dk~~~a~iias~A~A~G~EV~VF~T 39 (137)
T COG2210 8 ILASGTLDKAYAALIIASGAAAMGYEVTVFFT 39 (137)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEe
Confidence 34457888899999999999999999999998
No 358
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=31.21 E-value=68 Score=30.62 Aligned_cols=33 Identities=12% Similarity=0.178 Sum_probs=29.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 14 GRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
.|+|.++-.|++| -+||..|+++||+|++.+.+
T Consensus 1 ~~kI~ViGaGswG-----TALA~~la~ng~~V~lw~r~ 33 (329)
T COG0240 1 MMKIAVIGAGSWG-----TALAKVLARNGHEVRLWGRD 33 (329)
T ss_pred CceEEEEcCChHH-----HHHHHHHHhcCCeeEEEecC
Confidence 3789999989888 58999999999999999975
No 359
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=31.15 E-value=88 Score=29.41 Aligned_cols=40 Identities=20% Similarity=0.200 Sum_probs=32.1
Q ss_pred ccccCCCCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 012563 6 ESRISPRNGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHT 50 (460)
Q Consensus 6 ~~~~~~~~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~ 50 (460)
-+..+...+.+|.|+-.|-+| ..++..|.+.||.||+.-.
T Consensus 27 ~s~~~~~s~~~iGFIGLG~MG-----~~M~~nLik~G~kVtV~dr 66 (327)
T KOG0409|consen 27 MSSRITPSKTRIGFIGLGNMG-----SAMVSNLIKAGYKVTVYDR 66 (327)
T ss_pred ccccCCcccceeeEEeeccch-----HHHHHHHHHcCCEEEEEeC
Confidence 344555568899999888776 5789999999999999873
No 360
>COG4825 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=31.14 E-value=1.1e+02 Score=28.42 Aligned_cols=35 Identities=20% Similarity=0.239 Sum_probs=19.7
Q ss_pred hHHHHhhCCCeeecCcccchhhHH-HHHHHhhceeEee
Q 012563 364 TLESICEGVPMICQPCLADQMVNA-RYVSHVWRVGLHL 400 (460)
Q Consensus 364 ~~eal~~GvP~v~~P~~~DQ~~na-~~v~~~lG~G~~~ 400 (460)
..|+|.+| |-+++|...|-..-+ +|+++ +|+|-.-
T Consensus 238 ~~~aLR~g-a~vvlpad~dGhApGleRiQd-LGvgAmT 273 (395)
T COG4825 238 STEALRCG-AKVVLPADADGHAPGLERIQD-LGVGAMT 273 (395)
T ss_pred hHHHHhcc-cceeeccCCCCCCchHHHHHh-cCcceee
Confidence 44555555 445556655554443 66666 6766554
No 361
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=31.08 E-value=1e+02 Score=28.96 Aligned_cols=38 Identities=8% Similarity=0.109 Sum_probs=29.0
Q ss_pred CCcEEEEEcCCCCC-C---hHHHHHHHHHHHhCCCeEEEEeC
Q 012563 13 NGRRVILFPLPFQG-H---INPMLQLGSILYSKGFSITIIHT 50 (460)
Q Consensus 13 ~~~~il~~~~~~~G-H---v~p~l~lA~~L~~rGh~V~~~~~ 50 (460)
+++||+++..|... | +.-..++++.|.+.||+|+++..
T Consensus 2 ~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 2 KNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 37899999966443 1 45577899999999999988754
No 362
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=30.92 E-value=67 Score=25.54 Aligned_cols=37 Identities=16% Similarity=0.294 Sum_probs=31.1
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 012563 12 RNGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHT 50 (460)
Q Consensus 12 ~~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~ 50 (460)
++...|+++++|+. +...+..++.|.+.|.+++++..
T Consensus 7 ~~g~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~~ 43 (124)
T PF02780_consen 7 REGADITIIAYGSM--VEEALEAAEELEEEGIKAGVIDL 43 (124)
T ss_dssp ESSSSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEEE
T ss_pred eCCCCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEee
Confidence 45668899998887 56789999999999999998875
No 363
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=30.92 E-value=5.1e+02 Score=25.26 Aligned_cols=81 Identities=21% Similarity=0.256 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHh-C-CCCEEEEECCCCCCCchhhccCchhHHhhh--CCCceEEeccchHH---HhccCCCcceeeccC
Q 012563 288 ETEFLEIAWGLAN-S-RVPFLWVVRPGLVDGVEWLEALPKGYLEMV--DGRGYIVQWAPQQQ---VLAHPAVGGFLTHSG 360 (460)
Q Consensus 288 ~~~~~~~~~al~~-~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~vp~~~---lL~~~~~~~~I~HGG 360 (460)
.+.+..++.-+-+ . +.+|++.-.+....+ -+...++. -+++.+..-+|+.+ +|...++ |++-.=
T Consensus 210 iDll~~iIp~vc~~~p~vrfii~GDGPk~i~-------lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~I--FlntSl 280 (426)
T KOG1111|consen 210 IDLLLEIIPSVCDKHPEVRFIIIGDGPKRID-------LEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDI--FLNTSL 280 (426)
T ss_pred hHHHHHHHHHHHhcCCCeeEEEecCCcccch-------HHHHHHHhhccCceEEecccchHHHHHHHhcCcE--EeccHH
Confidence 4555555444433 3 356665544432221 12333333 37778889999854 7888888 887543
Q ss_pred ----chhhHHHHhhCCCeeec
Q 012563 361 ----WNSTLESICEGVPMICQ 377 (460)
Q Consensus 361 ----~~s~~eal~~GvP~v~~ 377 (460)
..++.||..+|.|+|..
T Consensus 281 TEafc~~ivEAaScGL~VVsT 301 (426)
T KOG1111|consen 281 TEAFCMVIVEAASCGLPVVST 301 (426)
T ss_pred HHHHHHHHHHHHhCCCEEEEe
Confidence 34788999999999974
No 364
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=30.90 E-value=1.1e+02 Score=26.90 Aligned_cols=43 Identities=14% Similarity=0.243 Sum_probs=32.8
Q ss_pred CCCCcEEEEEcC--CCCCChHHHHHHHHHHHh-CCCeEEEEeCCCC
Q 012563 11 PRNGRRVILFPL--PFQGHINPMLQLGSILYS-KGFSITIIHTKFN 53 (460)
Q Consensus 11 ~~~~~~il~~~~--~~~GHv~p~l~lA~~L~~-rGh~V~~~~~~~~ 53 (460)
...+++++.++. ++-|-..-...||..|++ +|++|.++=.+..
T Consensus 31 ~~~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~ 76 (207)
T TIGR03018 31 RKKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLR 76 (207)
T ss_pred cCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 334577766665 577888889999999996 6999999866533
No 365
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=30.88 E-value=2.1e+02 Score=27.14 Aligned_cols=97 Identities=13% Similarity=0.203 Sum_probs=55.1
Q ss_pred CCCeEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEECCCCCCCchhhccCchhHHhhhCCCceEEeccchHHHhccC
Q 012563 271 APKSVIYVSFGSVAAINETEFLEIAWGLANSRVPFLWVVRPGLVDGVEWLEALPKGYLEMVDGRGYIVQWAPQQQVLAHP 350 (460)
Q Consensus 271 ~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~lL~~~ 350 (460)
.++.+..|.+|..+. .+..++.+ .|.+++.. ..... ... ....+.+..++|+.+
T Consensus 144 ~gktvGIiG~G~IG~----~vA~~~~~---fgm~V~~~-d~~~~---------~~~---------~~~~~~~l~ell~~s 197 (311)
T PRK08410 144 KGKKWGIIGLGTIGK----RVAKIAQA---FGAKVVYY-STSGK---------NKN---------EEYERVSLEELLKTS 197 (311)
T ss_pred CCCEEEEECCCHHHH----HHHHHHhh---cCCEEEEE-CCCcc---------ccc---------cCceeecHHHHhhcC
Confidence 367899999999873 33333344 46665543 22110 000 012456788899999
Q ss_pred CCcceeeccCchhhHHHHhhCCCeeecCccc--chhhHHHHHHHhhceeEee----CC-ccCHHHHHHHHH
Q 012563 351 AVGGFLTHSGWNSTLESICEGVPMICQPCLA--DQMVNARYVSHVWRVGLHL----EG-KLEKKEIETAIR 414 (460)
Q Consensus 351 ~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~lG~G~~~----~~-~~~~~~l~~~i~ 414 (460)
++ ++-|. |... ....|++.++. |+=|..+ ++ -++++.|.++++
T Consensus 198 Dv--v~lh~------------------Plt~~T~~li~~~~~~~-Mk~~a~lIN~aRG~vVDe~AL~~AL~ 247 (311)
T PRK08410 198 DI--ISIHA------------------PLNEKTKNLIAYKELKL-LKDGAILINVGRGGIVNEKDLAKALD 247 (311)
T ss_pred CE--EEEeC------------------CCCchhhcccCHHHHHh-CCCCeEEEECCCccccCHHHHHHHHH
Confidence 98 88774 4432 34556666666 5555443 12 456666666554
No 366
>PRK12367 short chain dehydrogenase; Provisional
Probab=30.87 E-value=77 Score=28.80 Aligned_cols=44 Identities=11% Similarity=0.012 Sum_probs=29.8
Q ss_pred cccccCCCC-CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 5 QESRISPRN-GRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 5 ~~~~~~~~~-~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
|-+||+..+ +.+.++++.++.| --.++|+.|+++|++|+++...
T Consensus 3 ~~~~~~~~~l~~k~~lITGas~g---IG~ala~~l~~~G~~Vi~~~r~ 47 (245)
T PRK12367 3 QADPMAQSTWQGKRIGITGASGA---LGKALTKAFRAKGAKVIGLTHS 47 (245)
T ss_pred CcchhhHHhhCCCEEEEEcCCcH---HHHHHHHHHHHCCCEEEEEECC
Confidence 345555555 2356677755443 3478899999999999988753
No 367
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=30.86 E-value=1.7e+02 Score=29.59 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=28.3
Q ss_pred cE-EEEEc-CCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 15 RR-VILFP-LPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 15 ~~-il~~~-~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
|+ |+|.. ....|-..-...|++.|+++|++|..+-+.
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~G 41 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVG 41 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecC
Confidence 44 44442 335688999999999999999999988663
No 368
>PRK04946 hypothetical protein; Provisional
Probab=30.85 E-value=42 Score=29.05 Aligned_cols=57 Identities=18% Similarity=0.078 Sum_probs=35.2
Q ss_pred HHHHHHHHHhCCCCEEEEECCCCCCCchhhccCchhHHhhhCCCceEEeccch-HHHhccCCCcceeeccCchhhH
Q 012563 291 FLEIAWGLANSRVPFLWVVRPGLVDGVEWLEALPKGYLEMVDGRGYIVQWAPQ-QQVLAHPAVGGFLTHSGWNSTL 365 (460)
Q Consensus 291 ~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~-~~lL~~~~~~~~I~HGG~~s~~ 365 (460)
+..++..+...+.+++.++-+.. .++..+ .+..|+.| ..|+..+++ =-+|||.|.+.
T Consensus 112 L~~fl~~a~~~g~r~v~IIHGkG-----------~gvLk~-----~V~~wL~q~~~V~af~~A--~~~~GG~GA~~ 169 (181)
T PRK04946 112 LGALIAACRKEHVFCACVMHGHG-----------KHILKQ-----QTPLWLAQHPDVMAFHQA--PKEWGGDAALL 169 (181)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCC-----------HhHHHH-----HHHHHHcCCchhheeecc--CcccCCceEEE
Confidence 44455555556787777766653 122211 13577764 567888877 78999998764
No 369
>PRK13055 putative lipid kinase; Reviewed
Probab=30.81 E-value=2.1e+02 Score=27.50 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=21.2
Q ss_pred eeeccCchhhHHHHhh------CCCeeecCc
Q 012563 355 FLTHSGWNSTLESICE------GVPMICQPC 379 (460)
Q Consensus 355 ~I~HGG~~s~~eal~~------GvP~v~~P~ 379 (460)
+|--||-||+.|++.. ++|+-++|.
T Consensus 63 vvv~GGDGTl~evvngl~~~~~~~~LgiiP~ 93 (334)
T PRK13055 63 IIAAGGDGTINEVVNGIAPLEKRPKMAIIPA 93 (334)
T ss_pred EEEECCCCHHHHHHHHHhhcCCCCcEEEECC
Confidence 9999999999998743 467888997
No 370
>PRK07206 hypothetical protein; Provisional
Probab=30.32 E-value=2.3e+02 Score=27.96 Aligned_cols=32 Identities=9% Similarity=0.129 Sum_probs=24.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
++|+++-..+. ...+++++.++|++++++...
T Consensus 3 k~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~ 34 (416)
T PRK07206 3 KKVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSS 34 (416)
T ss_pred CeEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcC
Confidence 36777765433 356899999999999998874
No 371
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=30.28 E-value=2e+02 Score=32.13 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 13 NGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
...|++++..+. ....+++.|.+-|-+|+.+++.
T Consensus 319 ~GKrv~i~~g~~-----~~~~la~~l~elGmevv~~g~~ 352 (917)
T PRK14477 319 EGKRVVLFTGGV-----KTWSMVNALRELGVEVLAAGTQ 352 (917)
T ss_pred cCCEEEEECCCc-----hHHHHHHHHHHCCCEEEEEcCC
Confidence 356888886442 3667888999999999886653
No 372
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=30.00 E-value=4.1e+02 Score=26.63 Aligned_cols=32 Identities=9% Similarity=0.126 Sum_probs=24.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
+|||++-.+-. .+.+++++.+.|++|+.+.++
T Consensus 3 k~iLi~g~g~~-----a~~i~~aa~~~G~~vv~~~~~ 34 (451)
T PRK08591 3 DKILIANRGEI-----ALRIIRACKELGIKTVAVHST 34 (451)
T ss_pred ceEEEECCCHH-----HHHHHHHHHHcCCeEEEEcCh
Confidence 47777743332 588889999999999998774
No 373
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=29.98 E-value=93 Score=25.14 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=23.1
Q ss_pred cEEEEE-cCCCCCCh--HHHHHHHHHHHhCCCeE-EEEeC
Q 012563 15 RRVILF-PLPFQGHI--NPMLQLGSILYSKGFSI-TIIHT 50 (460)
Q Consensus 15 ~~il~~-~~~~~GHv--~p~l~lA~~L~~rGh~V-~~~~~ 50 (460)
||++|+ ..+-+|+- .-.+.+|+.+.+.||+| .++--
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~ 40 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFY 40 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEe
Confidence 455543 33334444 45788999999999984 55443
No 374
>PRK13057 putative lipid kinase; Reviewed
Probab=29.97 E-value=1.5e+02 Score=27.75 Aligned_cols=30 Identities=13% Similarity=0.155 Sum_probs=24.2
Q ss_pred ccCCCcceeeccCchhhHHHH----hhCCCeeecCc
Q 012563 348 AHPAVGGFLTHSGWNSTLESI----CEGVPMICQPC 379 (460)
Q Consensus 348 ~~~~~~~~I~HGG~~s~~eal----~~GvP~v~~P~ 379 (460)
...++ +|--||-||+.|++ ..++|+-++|.
T Consensus 49 ~~~d~--iiv~GGDGTv~~v~~~l~~~~~~lgiiP~ 82 (287)
T PRK13057 49 DGVDL--VIVGGGDGTLNAAAPALVETGLPLGILPL 82 (287)
T ss_pred cCCCE--EEEECchHHHHHHHHHHhcCCCcEEEECC
Confidence 34455 99999999999885 34789999997
No 375
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=29.79 E-value=65 Score=32.14 Aligned_cols=40 Identities=23% Similarity=0.317 Sum_probs=30.3
Q ss_pred cccCCCCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 7 SRISPRNGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 7 ~~~~~~~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
|+....++.||+|+-.|.-| +..|+.|...+++||++...
T Consensus 3 ~~~~~~~~~~vVIvGgG~aG-----l~~a~~L~~~~~~ItlI~~~ 42 (424)
T PTZ00318 3 SRTARLKKPNVVVLGTGWAG-----AYFVRNLDPKKYNITVISPR 42 (424)
T ss_pred CcccCCCCCeEEEECCCHHH-----HHHHHHhCcCCCeEEEEcCC
Confidence 56677788899999855444 44678887668999999864
No 376
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=29.78 E-value=1.4e+02 Score=29.28 Aligned_cols=40 Identities=15% Similarity=0.145 Sum_probs=28.9
Q ss_pred ccccCCCCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 6 ESRISPRNGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 6 ~~~~~~~~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
+.++++ ++|+|+|+-.+. ....++.++.+.|++|+++...
T Consensus 5 ~~~~~~-~~~~ilIiG~g~-----~~~~~~~a~~~~G~~v~~~~~~ 44 (395)
T PRK09288 5 GTPLSP-SATRVMLLGSGE-----LGKEVAIEAQRLGVEVIAVDRY 44 (395)
T ss_pred cCCCCC-CCCEEEEECCCH-----HHHHHHHHHHHCCCEEEEEeCC
Confidence 445666 678999986442 3455677788899999988874
No 377
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=29.56 E-value=1.3e+02 Score=28.06 Aligned_cols=41 Identities=12% Similarity=0.172 Sum_probs=34.3
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 012563 12 RNGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKF 52 (460)
Q Consensus 12 ~~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~ 52 (460)
.+...|+|+..++.|-..=...||..|++.|++|.++..+.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 33456667777788999999999999999999999999864
No 378
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=29.54 E-value=1.6e+02 Score=27.59 Aligned_cols=109 Identities=9% Similarity=0.066 Sum_probs=0.0
Q ss_pred CCCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCCCCCHHHHHHHHHHh
Q 012563 11 PRNGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNSPNSCNYPHFDFHSISDGLTDPSAEDSTTILITLNAK 90 (460)
Q Consensus 11 ~~~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (460)
..++|||+++.++....+.-++.-.+.=.-.+.-+.+++............|+.++.++...... ..
T Consensus 86 ~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~gIp~~~~~~~~~~~-------------~~ 152 (286)
T PRK13011 86 PAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVSNHPDLEPLAAWHGIPFHHFPITPDTK-------------PQ 152 (286)
T ss_pred cccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEECCccHHHHHHHhCCCEEEeCCCcCch-------------hh
Q ss_pred cchhHHHHHHHHhhcCCCCCCCCCCceEEEEcCcchHHH--HHhhcCCCeEEEeCc
Q 012563 91 CMVPFRNCLAKLVSNTNNNNAQEDSVACLITDFLWQFTH--VADEFKLPTIILQTH 144 (460)
Q Consensus 91 ~~~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~~~~~--~A~~lgiP~v~~~~~ 144 (460)
....+.+.++++ ++|++|.-.+...-. +-..+.-..+-+.++
T Consensus 153 ~~~~~~~~l~~~------------~~Dlivlagy~~il~~~~l~~~~~~iiNiHpS 196 (286)
T PRK13011 153 QEAQVLDVVEES------------GAELVVLARYMQVLSPELCRKLAGRAINIHHS 196 (286)
T ss_pred hHHHHHHHHHHh------------CcCEEEEeChhhhCCHHHHhhccCCeEEeccc
No 379
>PRK13059 putative lipid kinase; Reviewed
Probab=29.39 E-value=2.4e+02 Score=26.53 Aligned_cols=29 Identities=14% Similarity=0.051 Sum_probs=23.0
Q ss_pred CCCcceeeccCchhhHHHH---h---hCCCeeecCcc
Q 012563 350 PAVGGFLTHSGWNSTLESI---C---EGVPMICQPCL 380 (460)
Q Consensus 350 ~~~~~~I~HGG~~s~~eal---~---~GvP~v~~P~~ 380 (460)
.++ +|.-||-||+.|++ . .++|+-++|..
T Consensus 57 ~d~--vi~~GGDGTv~evv~gl~~~~~~~~lgviP~G 91 (295)
T PRK13059 57 YKY--ILIAGGDGTVDNVVNAMKKLNIDLPIGILPVG 91 (295)
T ss_pred CCE--EEEECCccHHHHHHHHHHhcCCCCcEEEECCC
Confidence 455 99999999988875 2 35899999973
No 380
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=29.36 E-value=76 Score=28.29 Aligned_cols=32 Identities=13% Similarity=0.153 Sum_probs=23.5
Q ss_pred CceEEEEcCcc--hHHH-HHhhcCCCeEEEeCccH
Q 012563 115 SVACLITDFLW--QFTH-VADEFKLPTIILQTHSV 146 (460)
Q Consensus 115 ~pDlvI~D~~~--~~~~-~A~~lgiP~v~~~~~~~ 146 (460)
+||+||..... .... -....++|++.+.....
T Consensus 60 ~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~~ 94 (238)
T PF01497_consen 60 KPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSSP 94 (238)
T ss_dssp --SEEEEETTSSCHHHHHHHHHTTSEEEEESSTTC
T ss_pred CCCEEEEeccccchHHHHHHhcccceEEEeecccc
Confidence 89999998776 3444 77788999999887753
No 381
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=29.28 E-value=5.7e+02 Score=27.68 Aligned_cols=39 Identities=8% Similarity=0.146 Sum_probs=30.6
Q ss_pred CcEEEEEcCC--CCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 012563 14 GRRVILFPLP--FQGHINPMLQLGSILYSKGFSITIIHTKF 52 (460)
Q Consensus 14 ~~~il~~~~~--~~GHv~p~l~lA~~L~~rGh~V~~~~~~~ 52 (460)
+.|++++++. +-|-..-...||..|+..|++|.++=.+.
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~ 570 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADL 570 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 4466666655 56788889999999999999999987653
No 382
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=29.27 E-value=59 Score=29.02 Aligned_cols=31 Identities=23% Similarity=0.130 Sum_probs=23.8
Q ss_pred cEEEEEc-CCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 012563 15 RRVILFP-LPFQGHINPMLQLGSILYSKGFSITIIHT 50 (460)
Q Consensus 15 ~~il~~~-~~~~GHv~p~l~lA~~L~~rGh~V~~~~~ 50 (460)
|+|+|+- .|..| ..+|..|+++||+|+++..
T Consensus 1 MkI~IIGG~G~mG-----~ala~~L~~~G~~V~v~~r 32 (219)
T TIGR01915 1 MKIAVLGGTGDQG-----KGLALRLAKAGNKIIIGSR 32 (219)
T ss_pred CEEEEEcCCCHHH-----HHHHHHHHhCCCEEEEEEc
Confidence 6788874 45444 5789999999999998765
No 383
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=29.15 E-value=79 Score=20.15 Aligned_cols=27 Identities=11% Similarity=0.190 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHhccchHHHHHHHHHHHH
Q 012563 405 EKKEIETAIRRLMVEAEGQEMRERITCLK 433 (460)
Q Consensus 405 ~~~~l~~~i~~ll~~~~~~~~~~~a~~l~ 433 (460)
+++.|.+||..+.++. -++++.|+++.
T Consensus 1 tee~l~~Ai~~v~~g~--~S~r~AA~~yg 27 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK--MSIRKAAKKYG 27 (45)
T ss_dssp -HHHHHHHHHHHHTTS--S-HHHHHHHHT
T ss_pred CHHHHHHHHHHHHhCC--CCHHHHHHHHC
Confidence 5788999999998763 56777776653
No 384
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=29.01 E-value=89 Score=28.49 Aligned_cols=36 Identities=22% Similarity=0.082 Sum_probs=28.9
Q ss_pred cEEEEEcC--CCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 012563 15 RRVILFPL--PFQGHINPMLQLGSILYSKGFSITIIHT 50 (460)
Q Consensus 15 ~~il~~~~--~~~GHv~p~l~lA~~L~~rGh~V~~~~~ 50 (460)
|+++.+.. |+-|-..=..+||..|++.|++|..+=-
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~ 38 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDL 38 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 44555544 4779999999999999999999988754
No 385
>PRK03094 hypothetical protein; Provisional
Probab=28.97 E-value=51 Score=24.13 Aligned_cols=20 Identities=15% Similarity=0.433 Sum_probs=16.6
Q ss_pred HHHHHHHHHhCCCeEEEEeC
Q 012563 31 MLQLGSILYSKGFSITIIHT 50 (460)
Q Consensus 31 ~l~lA~~L~~rGh~V~~~~~ 50 (460)
+-.+.+.|.++||+|.=+-+
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred cHHHHHHHHHCCCEEEecCc
Confidence 45789999999999987654
No 386
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=28.95 E-value=1.3e+02 Score=28.39 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=34.7
Q ss_pred ccCCCCCcEEEEEcCCCCCCh-HHHHHHHHHHHhCCCeEEEEeC
Q 012563 8 RISPRNGRRVILFPLPFQGHI-NPMLQLGSILYSKGFSITIIHT 50 (460)
Q Consensus 8 ~~~~~~~~~il~~~~~~~GHv-~p~l~lA~~L~~rGh~V~~~~~ 50 (460)
|.+..+..-++++++|..+|. ..+..+|+.|+..|+.|.-+=.
T Consensus 47 p~~~~~pr~lv~~~HG~g~~~s~~~~~~a~~l~~~g~~v~a~D~ 90 (313)
T KOG1455|consen 47 PLSGTEPRGLVFLCHGYGEHSSWRYQSTAKRLAKSGFAVYAIDY 90 (313)
T ss_pred cCCCCCCceEEEEEcCCcccchhhHHHHHHHHHhCCCeEEEeec
Confidence 334446778889999999998 7788899999999999876543
No 387
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=28.75 E-value=70 Score=22.38 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=17.6
Q ss_pred HHHHHHHHHhCCCeEEEEeCC
Q 012563 31 MLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 31 ~l~lA~~L~~rGh~V~~~~~~ 51 (460)
-+..|..|+++|++|+++=..
T Consensus 8 Gl~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 8 GLAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHHCCCcEEEEecC
Confidence 467889999999999998763
No 388
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=28.62 E-value=1.2e+02 Score=29.29 Aligned_cols=38 Identities=8% Similarity=0.037 Sum_probs=32.5
Q ss_pred CcEEEEEcCCC--CCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 14 GRRVILFPLPF--QGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 14 ~~~il~~~~~~--~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
++||+++++|+ .|=-+-..++.+.+..+|.+|.-+-..
T Consensus 2 ~kkIaIlTSGGdaPGmNa~Iravvr~a~~~g~eV~Gi~~G 41 (347)
T COG0205 2 MKKIAILTSGGDAPGMNAVIRAVVRTAIKEGLEVFGIYNG 41 (347)
T ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHcCCEEEEEecc
Confidence 57999999994 587888999999999999999888763
No 389
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=28.45 E-value=1.9e+02 Score=28.01 Aligned_cols=11 Identities=27% Similarity=0.649 Sum_probs=9.4
Q ss_pred CCCeeecCccc
Q 012563 371 GVPMICQPCLA 381 (460)
Q Consensus 371 GvP~v~~P~~~ 381 (460)
++|+|.+|...
T Consensus 124 ~~P~i~VPTta 134 (357)
T cd08181 124 ALPVVAIPTTA 134 (357)
T ss_pred CCCEEEEeCCC
Confidence 78999999853
No 390
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=28.45 E-value=91 Score=22.40 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhCCCeEEEEeCC
Q 012563 30 PMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 30 p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
-.+.+|..|++.|.+||++...
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~ 31 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERS 31 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHHHhCcEEEEEecc
Confidence 4589999999999999999984
No 391
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=28.42 E-value=1.2e+02 Score=28.40 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=23.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 16 RVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 16 ~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
+|++.- +.|-+- ..|++.|.++||+|+.+...
T Consensus 2 ~ILVtG--~tGfiG--~~l~~~L~~~g~~V~~~~r~ 33 (314)
T COG0451 2 RILVTG--GAGFIG--SHLVERLLAAGHDVRGLDRL 33 (314)
T ss_pred eEEEEc--CcccHH--HHHHHHHHhCCCeEEEEeCC
Confidence 344443 345444 88999999999999999974
No 392
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=28.25 E-value=1.7e+02 Score=22.85 Aligned_cols=70 Identities=10% Similarity=0.033 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCCCCchhhccCchhHHhhhCCCceEEe-------ccchHHH---hccCCCccee
Q 012563 287 NETEFLEIAWGLANSRVPFLWVVRPGLVDGVEWLEALPKGYLEMVDGRGYIVQ-------WAPQQQV---LAHPAVGGFL 356 (460)
Q Consensus 287 ~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~vp~~~l---L~~~~~~~~I 356 (460)
+.+...+++.++++.+.+.+.+..+.+... ..+ +..+..+... |+....| .....+ ..
T Consensus 10 rGeia~r~~ra~r~~Gi~tv~v~s~~d~~s--------~~~--~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~--~~ 77 (110)
T PF00289_consen 10 RGEIAVRIIRALRELGIETVAVNSNPDTVS--------THV--DMADEAYFEPPGPSPESYLNIEAIIDIARKEGA--DA 77 (110)
T ss_dssp -HHHHHHHHHHHHHTTSEEEEEEEGGGTTG--------HHH--HHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTE--SE
T ss_pred CCHHHHHHHHHHHHhCCcceeccCchhccc--------ccc--cccccceecCcchhhhhhccHHHHhhHhhhhcC--cc
Confidence 334567789999999999998887654221 111 2233334433 5555443 334444 88
Q ss_pred eccCchhhHHHH
Q 012563 357 THSGWNSTLESI 368 (460)
Q Consensus 357 ~HGG~~s~~eal 368 (460)
.|+|+|-..|..
T Consensus 78 i~pGyg~lse~~ 89 (110)
T PF00289_consen 78 IHPGYGFLSENA 89 (110)
T ss_dssp EESTSSTTTTHH
T ss_pred cccccchhHHHH
Confidence 999998777653
No 393
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.21 E-value=40 Score=31.48 Aligned_cols=29 Identities=10% Similarity=0.162 Sum_probs=23.0
Q ss_pred cCCCcceeeccCchhhHHHHh---hCCCeeecCc
Q 012563 349 HPAVGGFLTHSGWNSTLESIC---EGVPMICQPC 379 (460)
Q Consensus 349 ~~~~~~~I~HGG~~s~~eal~---~GvP~v~~P~ 379 (460)
.+++ +|.-||-||+++++. .++|++.++.
T Consensus 57 ~~d~--vi~iGGDGTlL~a~~~~~~~~pi~gIn~ 88 (277)
T PRK03708 57 DVDF--IIAIGGDGTILRIEHKTKKDIPILGINM 88 (277)
T ss_pred CCCE--EEEEeCcHHHHHHHHhcCCCCeEEEEeC
Confidence 3455 999999999999984 3568888775
No 394
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=28.20 E-value=70 Score=24.72 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEeC
Q 012563 29 NPMLQLGSILYSKGFSITIIHT 50 (460)
Q Consensus 29 ~p~l~lA~~L~~rGh~V~~~~~ 50 (460)
.|.+.|+++|.++|.+|.+.=+
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP 38 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDP 38 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-T
T ss_pred CHHHHHHHHHHHCCCEEEEECC
Confidence 7899999999999999877654
No 395
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=28.18 E-value=73 Score=28.03 Aligned_cols=31 Identities=19% Similarity=0.241 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEE
Q 012563 13 NGRRVILFPLPFQGHINPMLQLGSILYSKGFSITII 48 (460)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~ 48 (460)
+.++|+++-+|. --..+|+.|.+.||+|++.
T Consensus 27 ~gk~v~I~G~G~-----vG~~~A~~L~~~G~~Vvv~ 57 (200)
T cd01075 27 EGKTVAVQGLGK-----VGYKLAEHLLEEGAKLIVA 57 (200)
T ss_pred CCCEEEEECCCH-----HHHHHHHHHHHCCCEEEEE
Confidence 457888887764 4468999999999999954
No 396
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=28.15 E-value=65 Score=26.27 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=21.2
Q ss_pred CCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 25 QGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 25 ~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
.-.+--.+=++..|.++||+|++++++
T Consensus 10 Pvq~p~alYl~~~Lk~~G~~v~Va~np 36 (139)
T PF09001_consen 10 PVQTPSALYLSYKLKKKGFEVVVAGNP 36 (139)
T ss_dssp TTHHHHHHHHHHHHHCTTEEEEEEE-H
T ss_pred cchhHHHHHHHHHHHhcCCeEEEecCH
Confidence 344555778889999999999999985
No 397
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=28.14 E-value=1.3e+02 Score=21.75 Aligned_cols=33 Identities=15% Similarity=0.193 Sum_probs=28.0
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEe
Q 012563 17 VILFPLPFQGHINPMLQLGSILYSKGFSITIIH 49 (460)
Q Consensus 17 il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~ 49 (460)
+++...++.|-..-...+|..|++.|++|.++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 455666688888999999999999999998877
No 398
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=28.03 E-value=3.5e+02 Score=26.48 Aligned_cols=26 Identities=12% Similarity=0.186 Sum_probs=20.4
Q ss_pred CceEEEEcCcchHHH-HHhhcCCCeEEEeC
Q 012563 115 SVACLITDFLWQFTH-VADEFKLPTIILQT 143 (460)
Q Consensus 115 ~pDlvI~D~~~~~~~-~A~~lgiP~v~~~~ 143 (460)
+||++|.+.. .. .++++|||++.+..
T Consensus 348 ~pdl~ig~~~---~~~~~~~~~ip~~~~~~ 374 (399)
T cd00316 348 KPDLIIGGSK---GRYIAKKLGIPLVRIGF 374 (399)
T ss_pred CCCEEEECCc---HHHHHHHhCCCEEEcCC
Confidence 7999999953 45 88889999986443
No 399
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=27.83 E-value=4.7e+02 Score=26.15 Aligned_cols=32 Identities=9% Similarity=0.063 Sum_probs=24.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
+||+++-.+-. .+.+++++.+.|++|+++.+.
T Consensus 3 ~~ililg~g~~-----~~~~~~~a~~lG~~~v~~~~~ 34 (450)
T PRK06111 3 QKVLIANRGEI-----AVRIIRTCQKLGIRTVAIYSE 34 (450)
T ss_pred ceEEEECCcHH-----HHHHHHHHHHcCCeEEEEech
Confidence 46777765443 377888888899999999864
No 400
>PRK04940 hypothetical protein; Provisional
Probab=27.80 E-value=1.5e+02 Score=25.66 Aligned_cols=30 Identities=7% Similarity=0.000 Sum_probs=23.7
Q ss_pred CceEEEEcCcc-hHHH-HHhhcCCCeEEEeCc
Q 012563 115 SVACLITDFLW-QFTH-VADEFKLPTIILQTH 144 (460)
Q Consensus 115 ~pDlvI~D~~~-~~~~-~A~~lgiP~v~~~~~ 144 (460)
+++++|...+. +|+. +|+++|+|.|.+.|+
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPA 91 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPN 91 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCC
Confidence 35677766544 7778 999999999998776
No 401
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=27.62 E-value=1e+02 Score=31.26 Aligned_cols=108 Identities=12% Similarity=0.127 Sum_probs=51.5
Q ss_pred CCCChHHHHHHHHHHHhC--------CC----eEEEEeCCCCCC---C-------CCCCCCceEEeCCCCC----CCCCC
Q 012563 24 FQGHINPMLQLGSILYSK--------GF----SITIIHTKFNSP---N-------SCNYPHFDFHSISDGL----TDPSA 77 (460)
Q Consensus 24 ~~GHv~p~l~lA~~L~~r--------Gh----~V~~~~~~~~~~---~-------~~~~~~~~~~~~~~~~----~~~~~ 77 (460)
+.|.+.=.+.+|++|.+. |- +|.++|.--+.. . .....+.....+|=+- ...+.
T Consensus 295 TGGQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd~~~t~~~q~le~~~gt~~a~IlRvPF~~~~gi~~kwi 374 (550)
T PF00862_consen 295 TGGQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPDAKGTTCNQRLEKVSGTENARILRVPFGPEKGILRKWI 374 (550)
T ss_dssp SSHHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TBTTCGGGTSSEEEETTESSEEEEEE-ESESTEEE-S--
T ss_pred CCCcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccCCcCCCccccccccCCCCCcEEEEecCCCCcchhhhcc
Confidence 446677788888888652 44 466666321111 1 1112456677777211 11222
Q ss_pred CC--HHHHHHHHHHhcchhHHHHHHHHhhcCCCCCCCCCCceEEEEcCcc--hHHH-HHhhcCCCeEEEeCc
Q 012563 78 ED--STTILITLNAKCMVPFRNCLAKLVSNTNNNNAQEDSVACLITDFLW--QFTH-VADEFKLPTIILQTH 144 (460)
Q Consensus 78 ~~--~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~--~~~~-~A~~lgiP~v~~~~~ 144 (460)
+. .+.+++.+... .....+.++ .+ +||+|+..+.. ..+. +++++|||.+.+..+
T Consensus 375 srf~lWPyLe~fa~d---~~~~i~~e~---~~-------~PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaHs 433 (550)
T PF00862_consen 375 SRFDLWPYLEEFADD---AEREILAEL---QG-------KPDLIIGNYSDGNLVASLLSRKLGVTQCFIAHS 433 (550)
T ss_dssp -GGG-GGGHHHHHHH---HHHHHHHHH---TS---------SEEEEEHHHHHHHHHHHHHHHT-EEEEE-SS
T ss_pred chhhchhhHHHHHHH---HHHHHHHHh---CC-------CCcEEEeccCcchHHHHHHHhhcCCceehhhhc
Confidence 21 34445555322 112222222 12 79999976432 4444 999999999987666
No 402
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=27.59 E-value=1.3e+02 Score=31.14 Aligned_cols=30 Identities=17% Similarity=0.096 Sum_probs=24.9
Q ss_pred cCCCcceeeccCchhhHHHHhhCCCeeecCccc
Q 012563 349 HPAVGGFLTHSGWNSTLESICEGVPMICQPCLA 381 (460)
Q Consensus 349 ~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~ 381 (460)
.+++ +|+.||.+..... +..+|+|-++..+
T Consensus 64 ~~dv--iIsrG~ta~~i~~-~~~iPVv~i~~s~ 93 (538)
T PRK15424 64 RCDA--IIAAGSNGAYLKS-RLSVPVILIKPSG 93 (538)
T ss_pred CCcE--EEECchHHHHHHh-hCCCCEEEecCCH
Confidence 4566 9999999988887 5679999999854
No 403
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=27.50 E-value=1.5e+02 Score=22.46 Aligned_cols=38 Identities=11% Similarity=0.057 Sum_probs=27.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 012563 13 NGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHT 50 (460)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~ 50 (460)
+..||+++|..+.+--.-.-.+=+.+.++|.++.+...
T Consensus 2 ~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~ 39 (95)
T TIGR00853 2 NETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAG 39 (95)
T ss_pred CccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEe
Confidence 45799999998887444445555666778888776655
No 404
>PLN02327 CTP synthase
Probab=27.38 E-value=92 Score=32.08 Aligned_cols=39 Identities=18% Similarity=0.133 Sum_probs=33.3
Q ss_pred cEEEEEcCC---CCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012563 15 RRVILFPLP---FQGHINPMLQLGSILYSKGFSITIIHTKFN 53 (460)
Q Consensus 15 ~~il~~~~~---~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~ 53 (460)
||.+|++.| +.|-=.-...|+..|..||++|+.+--+++
T Consensus 1 mk~ifvtGGV~S~lGKGi~~aSig~ll~~~g~~V~~~K~DPY 42 (557)
T PLN02327 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPY 42 (557)
T ss_pred CcEEEEcCCcccCcchHHHHHHHHHHHHHCCCceeeeecccc
Confidence 588899988 567788899999999999999999887643
No 405
>PLN02712 arogenate dehydrogenase
Probab=27.36 E-value=66 Score=34.28 Aligned_cols=42 Identities=7% Similarity=0.158 Sum_probs=31.5
Q ss_pred ccccccCCCCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 012563 4 KQESRISPRNGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHT 50 (460)
Q Consensus 4 ~~~~~~~~~~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~ 50 (460)
+.-.|....++|+|+|+-.|..|. .+|+.|.+.||+|+++..
T Consensus 359 ~~~~~~~~~~~~kIgIIGlG~mG~-----slA~~L~~~G~~V~~~dr 400 (667)
T PLN02712 359 QVSGCVNDGSKLKIAIVGFGNFGQ-----FLAKTMVKQGHTVLAYSR 400 (667)
T ss_pred hhhhccCCCCCCEEEEEecCHHHH-----HHHHHHHHCcCEEEEEEC
Confidence 344455566889999997655553 788999999999987765
No 406
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=27.25 E-value=1.1e+02 Score=28.42 Aligned_cols=46 Identities=15% Similarity=0.339 Sum_probs=33.7
Q ss_pred chhHHHHHHHHhhcCCCCCCCCCCceEEEEcCcc---hHHH---HHhhcCCCeEEEeCc
Q 012563 92 MVPFRNCLAKLVSNTNNNNAQEDSVACLITDFLW---QFTH---VADEFKLPTIILQTH 144 (460)
Q Consensus 92 ~~~l~~~l~~l~~~~~~~~~~~~~pDlvI~D~~~---~~~~---~A~~lgiP~v~~~~~ 144 (460)
...+++.++++.+... +.=+||.|.|+ ..+- +|.+.+||++++.-.
T Consensus 132 ~p~IKE~vR~~I~~A~-------kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYiLLD~ 183 (284)
T PF07894_consen 132 QPHIKEVVRRMIQQAQ-------KVIAIVMDVFTDVDIFCDLLEAANKRGVPVYILLDE 183 (284)
T ss_pred CCCHHHHHHHHHHHhc-------ceeEEEeeccccHHHHHHHHHHHHhcCCcEEEEech
Confidence 3467788888776554 78899999876 3333 888999999886554
No 407
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=27.21 E-value=76 Score=32.97 Aligned_cols=95 Identities=15% Similarity=0.116 Sum_probs=50.5
Q ss_pred cchHHHhccCCCcceeecc-Cch-hhHHHHhhCCCeeecCccc-chhhHHH--HHHHhhceeEeeCCccCHHHHHHHHHH
Q 012563 341 APQQQVLAHPAVGGFLTHS-GWN-STLESICEGVPMICQPCLA-DQMVNAR--YVSHVWRVGLHLEGKLEKKEIETAIRR 415 (460)
Q Consensus 341 vp~~~lL~~~~~~~~I~HG-G~~-s~~eal~~GvP~v~~P~~~-DQ~~na~--~v~~~lG~G~~~~~~~~~~~l~~~i~~ 415 (460)
.++.+++..|++++|-|-= -|| |=+||+++|||.|.-=+.+ -++.+-. .-.. .|+-+.=+...+.++..+.|.+
T Consensus 461 l~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~-~GV~VvdR~~~n~~e~v~~la~ 539 (633)
T PF05693_consen 461 LDYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDPEE-YGVYVVDRRDKNYDESVNQLAD 539 (633)
T ss_dssp S-HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHGG-GTEEEE-SSSS-HHHHHHHHHH
T ss_pred CCHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhccCcC-CcEEEEeCCCCCHHHHHHHHHH
Confidence 3677888888885555521 133 8899999999999855532 1121110 1123 2665554445566665555555
Q ss_pred Hhc----cc--hHHHHHHHHHHHHHHH
Q 012563 416 LMV----EA--EGQEMRERITCLKKNV 436 (460)
Q Consensus 416 ll~----~~--~~~~~~~~a~~l~~~~ 436 (460)
.|. -. +....|++++++++.+
T Consensus 540 ~l~~f~~~~~rqri~~Rn~ae~LS~~~ 566 (633)
T PF05693_consen 540 FLYKFCQLSRRQRIIQRNRAERLSDLA 566 (633)
T ss_dssp HHHHHHT--HHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 543 11 1356788888877654
No 408
>PRK06180 short chain dehydrogenase; Provisional
Probab=27.16 E-value=1e+02 Score=28.38 Aligned_cols=33 Identities=9% Similarity=0.047 Sum_probs=24.3
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 16 RVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 16 ~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
+.++++ |+.|.+ ...+++.|+++||+|+++...
T Consensus 5 ~~vlVt-Gasggi--G~~la~~l~~~G~~V~~~~r~ 37 (277)
T PRK06180 5 KTWLIT-GVSSGF--GRALAQAALAAGHRVVGTVRS 37 (277)
T ss_pred CEEEEe-cCCChH--HHHHHHHHHhCcCEEEEEeCC
Confidence 445566 445544 678899999999999988763
No 409
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=27.14 E-value=1.1e+02 Score=28.96 Aligned_cols=38 Identities=16% Similarity=0.265 Sum_probs=33.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 012563 13 NGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHT 50 (460)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~ 50 (460)
++..++++.+|..-|......+|..|..+|++|..+=-
T Consensus 32 ~~~g~Vvl~HG~~Eh~~ry~~la~~l~~~G~~V~~~D~ 69 (298)
T COG2267 32 PPKGVVVLVHGLGEHSGRYEELADDLAARGFDVYALDL 69 (298)
T ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHhCCCEEEEecC
Confidence 34488999999999999999999999999999987654
No 410
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=26.97 E-value=1e+02 Score=30.26 Aligned_cols=41 Identities=17% Similarity=0.145 Sum_probs=32.8
Q ss_pred CCCcEEEEEcCC--CCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 012563 12 RNGRRVILFPLP--FQGHINPMLQLGSILYSKGFSITIIHTKF 52 (460)
Q Consensus 12 ~~~~~il~~~~~--~~GHv~p~l~lA~~L~~rGh~V~~~~~~~ 52 (460)
.++++|+.+... +-|-..-...||..|+.+|++|.++=.+.
T Consensus 101 g~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~Dp 143 (387)
T TIGR03453 101 GEHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDP 143 (387)
T ss_pred CCCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 356676666544 77999999999999999999999986653
No 411
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=26.94 E-value=1.2e+02 Score=29.10 Aligned_cols=39 Identities=10% Similarity=0.298 Sum_probs=33.4
Q ss_pred EEEE--EcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012563 16 RVIL--FPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNS 54 (460)
Q Consensus 16 ~il~--~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~ 54 (460)
-|.+ ++.|+.|-.--.+.|++.|.++|++|.+++.++..
T Consensus 51 vIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGYg~ 91 (325)
T PRK00652 51 VIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRGYGG 91 (325)
T ss_pred EEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCCCCC
Confidence 3455 78899999999999999999999999999986543
No 412
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=26.93 E-value=2.6e+02 Score=27.45 Aligned_cols=63 Identities=14% Similarity=0.160 Sum_probs=38.2
Q ss_pred CCeEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEECCCCCCCchhhccCchhHHhhhCCCceEEeccchHHHhccCC
Q 012563 272 PKSVIYVSFGSVAAINETEFLEIAWGLANSRVPFLWVVRPGLVDGVEWLEALPKGYLEMVDGRGYIVQWAPQQQVLAHPA 351 (460)
Q Consensus 272 ~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~lL~~~~ 351 (460)
++.+-.|.+|.++. .+++-+...|.+++..-.... . .. ....+.+..++++.++
T Consensus 116 gktvGIIG~G~IG~-------~vA~~l~a~G~~V~~~dp~~~---------~-~~---------~~~~~~~L~ell~~sD 169 (378)
T PRK15438 116 DRTVGIVGVGNVGR-------RLQARLEALGIKTLLCDPPRA---------D-RG---------DEGDFRSLDELVQEAD 169 (378)
T ss_pred CCEEEEECcCHHHH-------HHHHHHHHCCCEEEEECCccc---------c-cc---------cccccCCHHHHHhhCC
Confidence 67888899998873 344444556777664321110 0 00 0124567888999999
Q ss_pred CcceeeccCch
Q 012563 352 VGGFLTHSGWN 362 (460)
Q Consensus 352 ~~~~I~HGG~~ 362 (460)
+ ++-|.-.+
T Consensus 170 i--I~lh~PLt 178 (378)
T PRK15438 170 I--LTFHTPLF 178 (378)
T ss_pred E--EEEeCCCC
Confidence 8 88776543
No 413
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.89 E-value=1.9e+02 Score=19.34 Aligned_cols=31 Identities=13% Similarity=0.262 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 012563 424 EMRERITCLKKNVDACLRQGGSSHQALGRLVDHIL 458 (460)
Q Consensus 424 ~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
.-.+.++++.+.|. +|=||-.++.-....|+
T Consensus 12 qQQ~AVE~Iq~lMa----eGmSsGEAIa~VA~elR 42 (60)
T COG3140 12 QQQKAVERIQELMA----EGMSSGEAIALVAQELR 42 (60)
T ss_pred HHHHHHHHHHHHHH----ccccchhHHHHHHHHHH
Confidence 34455666666666 66666666666655553
No 414
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=26.88 E-value=1.1e+02 Score=22.49 Aligned_cols=36 Identities=14% Similarity=0.202 Sum_probs=28.0
Q ss_pred cEEEEEcCCCC--CChHHHHHHHHHHHhCCCeEEEEeC
Q 012563 15 RRVILFPLPFQ--GHINPMLQLGSILYSKGFSITIIHT 50 (460)
Q Consensus 15 ~~il~~~~~~~--GHv~p~l~lA~~L~~rGh~V~~~~~ 50 (460)
-+|+++|.... .+..-...++..|.+.|..|.+-..
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~ 39 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDR 39 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 46788886643 4666789999999999999988554
No 415
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=26.34 E-value=84 Score=26.05 Aligned_cols=62 Identities=11% Similarity=0.028 Sum_probs=50.0
Q ss_pred eeeccCchhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCC-ccCHHHHHHHHHHHhc
Q 012563 355 FLTHSGWNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEG-KLEKKEIETAIRRLMV 418 (460)
Q Consensus 355 ~I~HGG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~-~~~~~~l~~~i~~ll~ 418 (460)
.-.=|+=-||.|-+.---|+|+=.-..-+++|...+.+ |+...... .++.++|..+++.+-.
T Consensus 31 C~~C~~RFTTfE~~El~~~~VvKkdg~Re~F~r~Kl~~--gl~~A~~KRpVs~e~ie~~v~~ie~ 93 (156)
T COG1327 31 CLECGERFTTFERAELRPLIVVKKDGRREPFDREKLRR--GLIRACEKRPVSSEQIEEAVSHIER 93 (156)
T ss_pred ccccccccchhheeeeccceEECcCCCcCCCCHHHHHH--HHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 33445557888988888888888888889999988888 77777776 8999999999988754
No 416
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=26.30 E-value=74 Score=31.50 Aligned_cols=39 Identities=21% Similarity=0.186 Sum_probs=31.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 012563 13 NGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKF 52 (460)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~ 52 (460)
+++||++.-.|+. ...-...+.+.|.+.|++|.++.++.
T Consensus 5 ~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~ 43 (399)
T PRK05579 5 AGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEA 43 (399)
T ss_pred CCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHh
Confidence 3567777776766 44578999999999999999999853
No 417
>PHA02857 monoglyceride lipase; Provisional
Probab=25.98 E-value=1.1e+02 Score=28.06 Aligned_cols=38 Identities=11% Similarity=0.069 Sum_probs=32.3
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 012563 13 NGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHT 50 (460)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~ 50 (460)
++.-++++.+|..+|..-...+++.|.++|+.|+.+=.
T Consensus 23 ~~~~~v~llHG~~~~~~~~~~~~~~l~~~g~~via~D~ 60 (276)
T PHA02857 23 YPKALVFISHGAGEHSGRYEELAENISSLGILVFSHDH 60 (276)
T ss_pred CCCEEEEEeCCCccccchHHHHHHHHHhCCCEEEEccC
Confidence 44578888899999999999999999999998887644
No 418
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=25.94 E-value=4e+02 Score=22.42 Aligned_cols=113 Identities=17% Similarity=0.213 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCCCCchhhccCchhHHhhhCCCceEEeccchHHHhccCCCcceeecc---Cchh
Q 012563 287 NETEFLEIAWGLANSRVPFLWVVRPGLVDGVEWLEALPKGYLEMVDGRGYIVQWAPQQQVLAHPAVGGFLTHS---GWNS 363 (460)
Q Consensus 287 ~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~lL~~~~~~~~I~HG---G~~s 363 (460)
.++.+..+.+..+..+..+++...+.. ..||.-+ ......|-+++=+..+ |..+
T Consensus 38 tp~~~~~~~~~a~~~g~~viIa~AG~a-------a~Lpgvv----------------a~~t~~PVIgvP~~~~~l~G~da 94 (156)
T TIGR01162 38 TPELMLEYAKEAEERGIKVIIAGAGGA-------AHLPGMV----------------AALTPLPVIGVPVPSKALSGLDS 94 (156)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEeCCcc-------chhHHHH----------------HhccCCCEEEecCCccCCCCHHH
Q ss_pred hHHHHh--hCCCeeecCcccchhhHHHHHHHhhceeEeeCC-ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Q 012563 364 TLESIC--EGVPMICQPCLADQMVNARYVSHVWRVGLHLEG-KLEKKEIETAIRRLMVEAEGQEMRERITCLKKNVD 437 (460)
Q Consensus 364 ~~eal~--~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~-~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~ 437 (460)
++..+- .|+| +.-...|..+||..+.-. . .+...+|.+.++..-.+ +++...+-.++++
T Consensus 95 LlS~vqmP~gvp--vatv~I~~~~nAa~~Aaq--------Il~~~d~~l~~kl~~~r~~-----~~~~v~~~~~~l~ 156 (156)
T TIGR01162 95 LLSIVQMPSGVP--VATVAIGNAGNAALLAAQ--------ILGIKDPELAEKLKEYREN-----QKEEVLKKNKKLE 156 (156)
T ss_pred HHHHhcCCCCCe--eEEEEcCChhHHHHHHHH--------HHcCCCHHHHHHHHHHHHH-----HHHHHHhhhhccC
No 419
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=25.80 E-value=95 Score=28.12 Aligned_cols=30 Identities=7% Similarity=-0.001 Sum_probs=24.1
Q ss_pred CCCCChHHHHHHHHHHHhC--CCeEEEEeCCC
Q 012563 23 PFQGHINPMLQLGSILYSK--GFSITIIHTKF 52 (460)
Q Consensus 23 ~~~GHv~p~l~lA~~L~~r--Gh~V~~~~~~~ 52 (460)
|+.+=+.-.+.+.+.|.++ |++|.++.++.
T Consensus 8 Gs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~ 39 (234)
T TIGR02700 8 GAGHLLVESFQVMKELKREIEELRVSTFVSRA 39 (234)
T ss_pred CccHhHHHHHHHHHHHHhhcCCCeEEEEEChh
Confidence 3334446899999999999 99999999853
No 420
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=25.71 E-value=3.4e+02 Score=25.79 Aligned_cols=70 Identities=11% Similarity=0.073 Sum_probs=39.4
Q ss_pred CCeEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEECCCCCCCchhhccCchhHHhhhCCCceEEeccchHHHhccCC
Q 012563 272 PKSVIYVSFGSVAAINETEFLEIAWGLANSRVPFLWVVRPGLVDGVEWLEALPKGYLEMVDGRGYIVQWAPQQQVLAHPA 351 (460)
Q Consensus 272 ~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~lL~~~~ 351 (460)
++.+..|.+|+++. .+.+-+...|.+++..-.... .. .++. .......-.++++.++
T Consensus 136 g~tvgIvG~G~IG~-------~vA~~l~afG~~V~~~~~~~~--------~~-~~~~-------~~~~~~~l~e~l~~aD 192 (312)
T PRK15469 136 DFTIGILGAGVLGS-------KVAQSLQTWGFPLRCWSRSRK--------SW-PGVQ-------SFAGREELSAFLSQTR 192 (312)
T ss_pred CCEEEEECCCHHHH-------HHHHHHHHCCCEEEEEeCCCC--------CC-CCce-------eecccccHHHHHhcCC
Confidence 56888999999883 344445556776653322111 00 1110 1112234467899999
Q ss_pred CcceeeccCchhhHH
Q 012563 352 VGGFLTHSGWNSTLE 366 (460)
Q Consensus 352 ~~~~I~HGG~~s~~e 366 (460)
+ ++.|.-.+.-.+
T Consensus 193 v--vv~~lPlt~~T~ 205 (312)
T PRK15469 193 V--LINLLPNTPETV 205 (312)
T ss_pred E--EEECCCCCHHHH
Confidence 8 998877654433
No 421
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=25.70 E-value=93 Score=27.42 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=26.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 13 NGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
+..+|+++-.|..| ...++.|.+.|++|+++.+.
T Consensus 9 ~~k~vLVIGgG~va-----~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVA-----GRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHH-----HHHHHHHHHCCCeEEEEcCC
Confidence 45688888766544 67789999999999999863
No 422
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=25.64 E-value=4.4e+02 Score=29.41 Aligned_cols=103 Identities=13% Similarity=0.071 Sum_probs=58.4
Q ss_pred eccchH---HHhccCCCcceeec---cCchhh-HHHHhhCC---CeeecCcccchhhHHHHHHHhhc-eeEeeCCccCHH
Q 012563 339 QWAPQQ---QVLAHPAVGGFLTH---SGWNST-LESICEGV---PMICQPCLADQMVNARYVSHVWR-VGLHLEGKLEKK 407 (460)
Q Consensus 339 ~~vp~~---~lL~~~~~~~~I~H---GG~~s~-~eal~~Gv---P~v~~P~~~DQ~~na~~v~~~lG-~G~~~~~~~~~~ 407 (460)
..+|+. +++..+++ ++-- -|+|.+ .|+++++. -+++++ |=-.-|. . || -|+.+.. .+.+
T Consensus 446 ~~l~~eeL~AlY~~ADV--~lvTslrDGmNLva~Eyva~~~~~~GvLILS---EfaGaa~---~-L~~~AllVNP-~D~~ 515 (934)
T PLN03064 446 RSLDFHALCALYAVTDV--ALVTSLRDGMNLVSYEFVACQDSKKGVLILS---EFAGAAQ---S-LGAGAILVNP-WNIT 515 (934)
T ss_pred cCCCHHHHHHHHHhCCE--EEeCccccccCchHHHHHHhhcCCCCCeEEe---CCCchHH---H-hCCceEEECC-CCHH
Confidence 335654 46777777 6654 488754 59999955 122222 2222222 2 43 4566664 8999
Q ss_pred HHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 012563 408 EIETAIRRLMV-EAEGQEMRERITCLKKNVDACLRQGGSSHQALGRLVDHIL 458 (460)
Q Consensus 408 ~l~~~i~~ll~-~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 458 (460)
+++++|.++|+ +. +.-+++.+++.+.++ .-+...-++.+++.+.
T Consensus 516 ~vA~AI~~AL~M~~--~Er~~r~~~~~~~V~-----~~d~~~Wa~~fl~~L~ 560 (934)
T PLN03064 516 EVAASIAQALNMPE--EEREKRHRHNFMHVT-----THTAQEWAETFVSELN 560 (934)
T ss_pred HHHHHHHHHHhCCH--HHHHHHHHHHHhhcc-----cCCHHHHHHHHHHHHH
Confidence 99999999987 42 333444444444443 2345555555555543
No 423
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=25.40 E-value=1.3e+02 Score=28.45 Aligned_cols=28 Identities=14% Similarity=0.044 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCCC
Q 012563 286 INETEFLEIAWGLANSRVPFLWVVRPGL 313 (460)
Q Consensus 286 ~~~~~~~~~~~al~~~~~~~i~~~~~~~ 313 (460)
...+....+.+++.+...+.||.+.++.
T Consensus 50 ~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~ 77 (308)
T cd07062 50 SPEERAEELMAAFADPSIKAIIPTIGGD 77 (308)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEECCccc
Confidence 3566788899999988899999988764
No 424
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=25.39 E-value=1.2e+02 Score=27.26 Aligned_cols=33 Identities=15% Similarity=0.151 Sum_probs=24.4
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 16 RVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 16 ~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
+.++++ |+.|.+ -..+++.|.++|++|+.++..
T Consensus 2 ~~vlIt-Ga~g~l--G~~l~~~l~~~g~~v~~~~r~ 34 (255)
T TIGR01963 2 KTALVT-GAASGI--GLAIALALAAAGANVVVNDLG 34 (255)
T ss_pred CEEEEc-CCcchH--HHHHHHHHHHCCCEEEEEeCC
Confidence 345555 455666 468899999999999998764
No 425
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=25.36 E-value=3.5e+02 Score=21.47 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=29.7
Q ss_pred hhhhhccCCCCeEEEEEecccccC-CHHHHHHHHHHHHhCCCCEEEE
Q 012563 263 SISWLDKQAPKSVIYVSFGSVAAI-NETEFLEIAWGLANSRVPFLWV 308 (460)
Q Consensus 263 l~~~l~~~~~~~~v~vs~GS~~~~-~~~~~~~~~~al~~~~~~~i~~ 308 (460)
..+|+.. .-+.+|.|-.... +++.+..+++.+.+.+.--+.+
T Consensus 36 ~~~~l~~----gElvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i 78 (123)
T PF07905_consen 36 PSDWLRG----GELVLTTGYALRDDDEEELREFIRELAEKGAAGLGI 78 (123)
T ss_pred HHHhCCC----CeEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 5678754 3477788887775 5666888889998888655544
No 426
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.36 E-value=75 Score=31.34 Aligned_cols=37 Identities=16% Similarity=0.286 Sum_probs=29.4
Q ss_pred CcEEEEEcCC---CCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 14 GRRVILFPLP---FQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 14 ~~~il~~~~~---~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
+..+++=|.+ ..||+.|+..|. .|.++||+|+++..+
T Consensus 34 ~~Y~GfDPTa~slHlGhlv~l~kL~-~fQ~aGh~~ivLigd 73 (401)
T COG0162 34 RVYIGFDPTAPSLHLGHLVPLMKLR-RFQDAGHKPIVLIGD 73 (401)
T ss_pred eEEEeeCCCCCccchhhHHHHHHHH-HHHHCCCeEEEEecc
Confidence 4567777776 449999988875 578999999999874
No 427
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.28 E-value=54 Score=31.08 Aligned_cols=29 Identities=10% Similarity=0.181 Sum_probs=24.2
Q ss_pred cCCCcceeeccCchhhHHHHhh----CCCeeecCc
Q 012563 349 HPAVGGFLTHSGWNSTLESICE----GVPMICQPC 379 (460)
Q Consensus 349 ~~~~~~~I~HGG~~s~~eal~~----GvP~v~~P~ 379 (460)
.+++ +|+-||-||+++++.. ++|++++..
T Consensus 57 ~~d~--vi~~GGDGT~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 57 LIDL--AIVLGGDGTVLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred CcCE--EEEECCcHHHHHHHHHhccCCCCEEEEec
Confidence 4566 9999999999999864 789888776
No 428
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=25.26 E-value=68 Score=28.86 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=19.4
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 27 HINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 27 Hv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
|..-|...|++|.++|++|.++..+
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~ 71 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELD 71 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 5677999999999999999999874
No 429
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=25.07 E-value=1.2e+02 Score=28.86 Aligned_cols=37 Identities=11% Similarity=0.054 Sum_probs=28.0
Q ss_pred cEEEEEcCCC---CCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 15 RRVILFPLPF---QGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 15 ~~il~~~~~~---~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
|||+|+.-|- .-+..-..+|.++..+|||+|.++.+.
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~ 40 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPG 40 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehh
Confidence 6788877541 133345778999999999999999985
No 430
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=25.05 E-value=64 Score=23.68 Aligned_cols=21 Identities=14% Similarity=0.370 Sum_probs=18.1
Q ss_pred HHHHHHHHHhCCCeEEEEeCC
Q 012563 31 MLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 31 ~l~lA~~L~~rGh~V~~~~~~ 51 (460)
+-.+.+.|.++||+|+=+...
T Consensus 10 Ls~v~~~L~~~GyeVv~l~~~ 30 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLENE 30 (80)
T ss_pred chHHHHHHHHCCCEEEecCCc
Confidence 557899999999999988864
No 431
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=25.03 E-value=64 Score=30.54 Aligned_cols=33 Identities=12% Similarity=0.151 Sum_probs=27.8
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 14 GRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
.|||+|+-.|+.|-+ +|-.|.+.||+|+++...
T Consensus 2 ~m~I~IiGaGaiG~~-----~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSL-----WACRLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHH-----HHHHHHhCCCCeEEEEec
Confidence 589999999999865 456688899999999974
No 432
>PRK12829 short chain dehydrogenase; Provisional
Probab=25.01 E-value=1.4e+02 Score=27.03 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 13 NGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
+.+++++. |+.|.+ ...+++.|.++||+|+.+...
T Consensus 10 ~~~~vlIt--Ga~g~i--G~~~a~~L~~~g~~V~~~~r~ 44 (264)
T PRK12829 10 DGLRVLVT--GGASGI--GRAIAEAFAEAGARVHVCDVS 44 (264)
T ss_pred CCCEEEEe--CCCCcH--HHHHHHHHHHCCCEEEEEeCC
Confidence 44566554 444665 478899999999999887753
No 433
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=25.00 E-value=4e+02 Score=25.22 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=25.5
Q ss_pred EEEEecccccCCHHHHHHHHHHHHhCCCCEEEEECCC
Q 012563 276 IYVSFGSVAAINETEFLEIAWGLANSRVPFLWVVRPG 312 (460)
Q Consensus 276 v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 312 (460)
|+++.|.... .......++++|.+.|+++.+.+...
T Consensus 2 ~~~~~~~~gG-~~~~~~~la~~l~~~G~ev~v~~~~~ 37 (350)
T cd03785 2 ILIAGGGTGG-HIFPALALAEELRERGAEVLFLGTKR 37 (350)
T ss_pred EEEEecCchh-hhhHHHHHHHHHHhCCCEEEEEECCC
Confidence 5666666553 34466789999998899887776543
No 434
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=24.94 E-value=1.3e+02 Score=25.16 Aligned_cols=38 Identities=29% Similarity=0.527 Sum_probs=29.6
Q ss_pred CCcEEEEEcCC-------CCCChHHHHHHHHHHHhCCCeEEEEeC
Q 012563 13 NGRRVILFPLP-------FQGHINPMLQLGSILYSKGFSITIIHT 50 (460)
Q Consensus 13 ~~~~il~~~~~-------~~GHv~p~l~lA~~L~~rGh~V~~~~~ 50 (460)
+..+|+++..| +..|+=-++.++.++.++|.+=+++++
T Consensus 36 ~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVS 80 (165)
T COG0678 36 KGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVS 80 (165)
T ss_pred CCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEE
Confidence 45677777666 567999999999999999986555554
No 435
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=24.94 E-value=1.4e+02 Score=26.96 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=28.2
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCe-EEEEeC
Q 012563 17 VILFPLPFQGHINPMLQLGSILYSKGFS-ITIIHT 50 (460)
Q Consensus 17 il~~~~~~~GHv~p~l~lA~~L~~rGh~-V~~~~~ 50 (460)
|+|.-.|..|-......|.+.|+++|++ ++.+..
T Consensus 4 Vvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~ 38 (281)
T KOG3062|consen 4 VVICGLPCSGKSTRAVELREALKERGTKQSVRIID 38 (281)
T ss_pred EEEeCCCCCCchhHHHHHHHHHHhhcccceEEEec
Confidence 5667778999999999999999999986 555544
No 436
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=24.94 E-value=1.5e+02 Score=30.92 Aligned_cols=80 Identities=14% Similarity=0.123 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhCCCCEEEEECCCCCCCchhhccCchhHHhhhCCCceEEecc-----ch-----HHHhccCCCcceeec
Q 012563 289 TEFLEIAWGLANSRVPFLWVVRPGLVDGVEWLEALPKGYLEMVDGRGYIVQWA-----PQ-----QQVLAHPAVGGFLTH 358 (460)
Q Consensus 289 ~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----p~-----~~lL~~~~~~~~I~H 358 (460)
..-+.+++.|++.|.+.++.+.+... .++-+.+.+ ..+++.+.-. -+ ..+-..+. ++++|
T Consensus 14 ~~~~~l~~~L~~~GV~~vFgvpG~~~------~~l~dal~~--~~~i~~i~~~hE~~A~~~Adgyar~tg~~g--v~~~t 83 (564)
T PRK08155 14 TGAELIVRLLERQGIRIVTGIPGGAI------LPLYDALSQ--STQIRHILARHEQGAGFIAQGMARTTGKPA--VCMAC 83 (564)
T ss_pred cHHHHHHHHHHHcCCCEEEeCCCccc------HHHHHHHhc--cCCceEEEeccHHHHHHHHHHHHHHcCCCe--EEEEC
Confidence 34566888888888888887766531 112222211 1122222111 01 11222334 48888
Q ss_pred cCch------hhHHHHhhCCCeeecC
Q 012563 359 SGWN------STLESICEGVPMICQP 378 (460)
Q Consensus 359 GG~~------s~~eal~~GvP~v~~P 378 (460)
.|-| .+.||-..++|+|++.
T Consensus 84 ~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 84 SGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 7754 7899999999999985
No 437
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=24.89 E-value=1.5e+02 Score=29.41 Aligned_cols=22 Identities=14% Similarity=0.167 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhCCCeEEEEeCC
Q 012563 30 PMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 30 p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
--.++|++|.++|++|+++..+
T Consensus 216 ~G~aiA~~l~~~Ga~V~~v~~~ 237 (399)
T PRK05579 216 MGYALARAAARRGADVTLVSGP 237 (399)
T ss_pred HHHHHHHHHHHCCCEEEEeCCC
Confidence 4678999999999999999864
No 438
>PRK06835 DNA replication protein DnaC; Validated
Probab=24.89 E-value=1.4e+02 Score=28.78 Aligned_cols=38 Identities=11% Similarity=0.100 Sum_probs=32.9
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 14 GRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
+..++|+-.++.|-..=+.++|++|.++|+.|.|++.+
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~ 220 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTAD 220 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHH
Confidence 36788888888998888999999999999999998873
No 439
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=24.79 E-value=79 Score=35.14 Aligned_cols=35 Identities=20% Similarity=0.290 Sum_probs=29.3
Q ss_pred CCCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 012563 11 PRNGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHT 50 (460)
Q Consensus 11 ~~~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~ 50 (460)
+.++.||+++-.|--| +..|..|+++||+||++=.
T Consensus 380 ~~tgKKVaVVGaGPAG-----LsAA~~La~~Gh~Vtv~E~ 414 (1028)
T PRK06567 380 EPTNYNILVTGLGPAG-----FSLSYYLLRSGHNVTAIDG 414 (1028)
T ss_pred CCCCCeEEEECcCHHH-----HHHHHHHHhCCCeEEEEcc
Confidence 3568899999877544 8899999999999999975
No 440
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=24.74 E-value=2.1e+02 Score=22.53 Aligned_cols=42 Identities=21% Similarity=0.189 Sum_probs=31.3
Q ss_pred CCCCChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceE
Q 012563 23 PFQGHINPMLQLGSILYSKGFSITIIHTKFNSPNSCNYPHFDF 65 (460)
Q Consensus 23 ~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~ 65 (460)
...|...-.+..++.++++|..|..+|.....+... ...+.+
T Consensus 55 S~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~-~ad~~l 96 (128)
T cd05014 55 SNSGETDELLNLLPHLKRRGAPIIAITGNPNSTLAK-LSDVVL 96 (128)
T ss_pred eCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCchhh-hCCEEE
Confidence 667888899999999999999999999854443333 444443
No 441
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=24.73 E-value=1.5e+02 Score=26.25 Aligned_cols=43 Identities=21% Similarity=0.255 Sum_probs=32.2
Q ss_pred ccCCCCCcEEEEEcCCCC--CChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012563 8 RISPRNGRRVILFPLPFQ--GHINPMLQLGSILYSKGFSITIIHTKFN 53 (460)
Q Consensus 8 ~~~~~~~~~il~~~~~~~--GHv~p~l~lA~~L~~rGh~V~~~~~~~~ 53 (460)
.+...+..||++++.++- |+ -+-.|++|..+|++|+++.....
T Consensus 43 ~~~~~~~~~v~vlcG~GnNGGD---G~VaAR~L~~~G~~V~v~~~~~~ 87 (203)
T COG0062 43 EYPLGRARRVLVLCGPGNNGGD---GLVAARHLKAAGYAVTVLLLGDP 87 (203)
T ss_pred HcCcccCCEEEEEECCCCccHH---HHHHHHHHHhCCCceEEEEeCCC
Confidence 344444789999997754 44 46789999999999999886433
No 442
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=24.63 E-value=1.9e+02 Score=24.45 Aligned_cols=30 Identities=17% Similarity=0.336 Sum_probs=22.2
Q ss_pred cCCCcceeeccCc------hhhHHHHhhCCCeeecCcc
Q 012563 349 HPAVGGFLTHSGW------NSTLESICEGVPMICQPCL 380 (460)
Q Consensus 349 ~~~~~~~I~HGG~------~s~~eal~~GvP~v~~P~~ 380 (460)
++.+ +++|.|- +++.+|...++|+|++.-.
T Consensus 64 ~~~v--~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g~ 99 (172)
T PF02776_consen 64 RPGV--VIVTSGPGATNALTGLANAYADRIPVLVITGQ 99 (172)
T ss_dssp SEEE--EEEETTHHHHTTHHHHHHHHHTT-EEEEEEEE
T ss_pred cceE--EEeecccchHHHHHHHhhcccceeeEEEEecc
Confidence 3444 8888874 4778889999999998753
No 443
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=24.57 E-value=1.4e+02 Score=23.56 Aligned_cols=38 Identities=11% Similarity=0.364 Sum_probs=29.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 13 NGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
++-.++|+- ...|+...++.+++.++++|..|+.+|..
T Consensus 52 ~~~d~vi~i-s~sg~~~~~~~~~~~ak~~g~~vi~iT~~ 89 (131)
T PF01380_consen 52 DPDDLVIII-SYSGETRELIELLRFAKERGAPVILITSN 89 (131)
T ss_dssp STTEEEEEE-ESSSTTHHHHHHHHHHHHTTSEEEEEESS
T ss_pred cccceeEee-eccccchhhhhhhHHHHhcCCeEEEEeCC
Confidence 344444444 37789999999999999999999988874
No 444
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=24.47 E-value=1e+02 Score=27.99 Aligned_cols=30 Identities=10% Similarity=0.037 Sum_probs=21.2
Q ss_pred CceEEEEcCcchH--HH--HHhhcCCCeEEEeCc
Q 012563 115 SVACLITDFLWQF--TH--VADEFKLPTIILQTH 144 (460)
Q Consensus 115 ~pDlvI~D~~~~~--~~--~A~~lgiP~v~~~~~ 144 (460)
+||+||....... .. +.+..|+|++.+...
T Consensus 74 ~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~ 107 (262)
T cd01147 74 KPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGG 107 (262)
T ss_pred CCCEEEEecCCccchhHHHHHHhhCCCEEEEecC
Confidence 8999998755433 12 545599999887654
No 445
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=24.38 E-value=1.4e+02 Score=24.30 Aligned_cols=37 Identities=14% Similarity=0.129 Sum_probs=22.5
Q ss_pred hHHHhccCCCcceeeccCchhhHHHHhh----------CCCeeecCc
Q 012563 343 QQQVLAHPAVGGFLTHSGWNSTLESICE----------GVPMICQPC 379 (460)
Q Consensus 343 ~~~lL~~~~~~~~I~HGG~~s~~eal~~----------GvP~v~~P~ 379 (460)
...+|-..+-..++.-||.||+-|.... .+|++++=.
T Consensus 46 Rk~~m~~~sda~I~lPGG~GTl~El~~~~~~~~l~~~~~~Piil~~~ 92 (133)
T PF03641_consen 46 RKEIMIESSDAFIALPGGIGTLDELFEALTLMQLGRHNKVPIILLNI 92 (133)
T ss_dssp HHHHHHHHESEEEEES-SHHHHHHHHHHHHHHHTTSSTS-EEEEEEC
T ss_pred HHHHHHHhCCEEEEEecCCchHHHHHHHHHHHhhccccCCCEEEeCC
Confidence 3444443333457778889999887543 449888663
No 446
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=24.37 E-value=1.1e+02 Score=28.23 Aligned_cols=40 Identities=18% Similarity=0.191 Sum_probs=23.1
Q ss_pred CeEEEEEecccccCC-HHHHHHHHHHHHh--CCCCEEEEECCC
Q 012563 273 KSVIYVSFGSVAAIN-ETEFLEIAWGLAN--SRVPFLWVVRPG 312 (460)
Q Consensus 273 ~~~v~vs~GS~~~~~-~~~~~~~~~al~~--~~~~~i~~~~~~ 312 (460)
|.++++||||..... .+-+..+.+.+++ .++++-|++...
T Consensus 1 KAIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~ 43 (262)
T PF06180_consen 1 KAILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTSR 43 (262)
T ss_dssp EEEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-H
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHH
Confidence 357889999987733 3356666666665 367888887653
No 447
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=24.28 E-value=95 Score=31.46 Aligned_cols=39 Identities=23% Similarity=0.125 Sum_probs=30.9
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012563 14 GRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFN 53 (460)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~ 53 (460)
++||++.-.|+.+=+ =...|++.|.++|++|.++.++..
T Consensus 70 ~k~IllgVtGsIAay-ka~~lvr~L~k~G~~V~VvmT~sA 108 (475)
T PRK13982 70 SKRVTLIIGGGIAAY-KALDLIRRLKERGAHVRCVLTKAA 108 (475)
T ss_pred CCEEEEEEccHHHHH-HHHHHHHHHHhCcCEEEEEECcCH
Confidence 467777766666544 788999999999999999999643
No 448
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=24.23 E-value=3.2e+02 Score=26.63 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhCCCCEEEEECCC
Q 012563 288 ETEFLEIAWGLANSRVPFLWVVRPG 312 (460)
Q Consensus 288 ~~~~~~~~~al~~~~~~~i~~~~~~ 312 (460)
|.++..++.+|.+.|+++.+.+...
T Consensus 10 p~~~~~la~~L~~~G~~v~~~~~~~ 34 (396)
T cd03818 10 PGQFRHLAPALAAQGHEVVFLTEPN 34 (396)
T ss_pred chhHHHHHHHHHHCCCEEEEEecCC
Confidence 4567889999998899887766554
No 449
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=24.21 E-value=1.4e+02 Score=27.67 Aligned_cols=35 Identities=14% Similarity=0.268 Sum_probs=24.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHT 50 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~ 50 (460)
..|+|+ +|..++-.-...++..|.++||+|+.+--
T Consensus 19 p~vvli-HG~~~~~~~w~~~~~~L~~~g~~vi~~dl 53 (273)
T PLN02211 19 PHFVLI-HGISGGSWCWYKIRCLMENSGYKVTCIDL 53 (273)
T ss_pred CeEEEE-CCCCCCcCcHHHHHHHHHhCCCEEEEecc
Confidence 345444 45555555677888899989999987665
No 450
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=24.14 E-value=1.1e+02 Score=30.62 Aligned_cols=33 Identities=24% Similarity=0.473 Sum_probs=30.2
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 14 GRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
.+||+++-.|-.| +++|+.|.++|++|++.=..
T Consensus 7 ~~kv~V~GLG~sG-----~a~a~~L~~~G~~v~v~D~~ 39 (448)
T COG0771 7 GKKVLVLGLGKSG-----LAAARFLLKLGAEVTVSDDR 39 (448)
T ss_pred CCEEEEEeccccc-----HHHHHHHHHCCCeEEEEcCC
Confidence 7899999999888 99999999999999998764
No 451
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=24.12 E-value=1.4e+02 Score=26.21 Aligned_cols=36 Identities=22% Similarity=0.363 Sum_probs=28.5
Q ss_pred cEEEEEcCCCCCChHHHHH-HHHHHHh-CCCeEEEEeC
Q 012563 15 RRVILFPLPFQGHINPMLQ-LGSILYS-KGFSITIIHT 50 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~-lA~~L~~-rGh~V~~~~~ 50 (460)
|+|+++-+...||..-+.. +++.+.+ .|++|.++.-
T Consensus 2 ~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l 39 (200)
T PRK03767 2 AKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRV 39 (200)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEec
Confidence 4788888888999999776 5566666 8999988775
No 452
>PRK07574 formate dehydrogenase; Provisional
Probab=24.12 E-value=3.1e+02 Score=26.99 Aligned_cols=74 Identities=14% Similarity=0.111 Sum_probs=42.4
Q ss_pred CCeEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEECCCCCCCchhhccCchhHHhhhCCCceEEeccchHHHhccCC
Q 012563 272 PKSVIYVSFGSVAAINETEFLEIAWGLANSRVPFLWVVRPGLVDGVEWLEALPKGYLEMVDGRGYIVQWAPQQQVLAHPA 351 (460)
Q Consensus 272 ~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~lL~~~~ 351 (460)
++.+..|.+|++.. .+++.+...+.+++. +.... .+....... -+..+....++++.++
T Consensus 192 gktVGIvG~G~IG~-------~vA~~l~~fG~~V~~-~dr~~---------~~~~~~~~~----g~~~~~~l~ell~~aD 250 (385)
T PRK07574 192 GMTVGIVGAGRIGL-------AVLRRLKPFDVKLHY-TDRHR---------LPEEVEQEL----GLTYHVSFDSLVSVCD 250 (385)
T ss_pred CCEEEEECCCHHHH-------HHHHHHHhCCCEEEE-ECCCC---------CchhhHhhc----CceecCCHHHHhhcCC
Confidence 56788889999773 344444455766543 32211 111111000 1223456678999999
Q ss_pred CcceeeccCchhhHHHH
Q 012563 352 VGGFLTHSGWNSTLESI 368 (460)
Q Consensus 352 ~~~~I~HGG~~s~~eal 368 (460)
+ ++.|...+.-.+.+
T Consensus 251 v--V~l~lPlt~~T~~l 265 (385)
T PRK07574 251 V--VTIHCPLHPETEHL 265 (385)
T ss_pred E--EEEcCCCCHHHHHH
Confidence 9 99998876544443
No 453
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=24.11 E-value=1.7e+02 Score=27.28 Aligned_cols=91 Identities=18% Similarity=0.181 Sum_probs=58.2
Q ss_pred hhhhhccCCCCeEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEECCCCCCCchhhccCchhHHhhhCCCceEEeccc
Q 012563 263 SISWLDKQAPKSVIYVSFGSVAAINETEFLEIAWGLANSRVPFLWVVRPGLVDGVEWLEALPKGYLEMVDGRGYIVQWAP 342 (460)
Q Consensus 263 l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp 342 (460)
..+++.. .+.++|+.+|+... .-..+...|.+.+.++....+... .+ .
T Consensus 123 av~~L~~--A~rI~~~G~g~S~~----vA~~~~~~l~~ig~~~~~~~d~~~-------------------------~~-~ 170 (281)
T COG1737 123 AVELLAK--ARRIYFFGLGSSGL----VASDLAYKLMRIGLNVVALSDTHG-------------------------QL-M 170 (281)
T ss_pred HHHHHHc--CCeEEEEEechhHH----HHHHHHHHHHHcCCceeEecchHH-------------------------HH-H
Confidence 3455644 45677777777553 445566677777877665543221 01 2
Q ss_pred hHHHhccCCCcceeeccCch-----hhHHHHhhCCCeeecCcccchhh
Q 012563 343 QQQVLAHPAVGGFLTHSGWN-----STLESICEGVPMICQPCLADQMV 385 (460)
Q Consensus 343 ~~~lL~~~~~~~~I~HGG~~-----s~~eal~~GvP~v~~P~~~DQ~~ 385 (460)
+...+...++-++|+|.|.. ....+-..|+|+|.+-...+-+.
T Consensus 171 ~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~spl 218 (281)
T COG1737 171 QLALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSADSPL 218 (281)
T ss_pred HHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCCCCCch
Confidence 44456666777799999975 44556778999999877655443
No 454
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=24.06 E-value=95 Score=27.97 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhCCCeEEEEeC
Q 012563 30 PMLQLGSILYSKGFSITIIHT 50 (460)
Q Consensus 30 p~l~lA~~L~~rGh~V~~~~~ 50 (460)
-..++|++|+++|++|+++..
T Consensus 27 IG~AIA~~la~~Ga~Vvlv~~ 47 (227)
T TIGR02114 27 LGKIITETFLSAGHEVTLVTT 47 (227)
T ss_pred HHHHHHHHHHHCCCEEEEEcC
Confidence 357899999999999998864
No 455
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=24.03 E-value=1.4e+02 Score=25.12 Aligned_cols=36 Identities=14% Similarity=0.239 Sum_probs=29.3
Q ss_pred cEEEEEcCCCCCChHHHH-HHHHHHHhCCCeEEEEeC
Q 012563 15 RRVILFPLPFQGHINPML-QLGSILYSKGFSITIIHT 50 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l-~lA~~L~~rGh~V~~~~~ 50 (460)
||+|++=..-.|...=+. -+|.+|.++||+|.+.--
T Consensus 1 Mk~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl 37 (175)
T COG4635 1 MKTLILYSTRDGQTRKIAEYIASHLRESGIQVDIQDL 37 (175)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHhhhcCCeeeeeeh
Confidence 788888878888887754 578999999999998754
No 456
>PRK07454 short chain dehydrogenase; Provisional
Probab=23.99 E-value=1.5e+02 Score=26.38 Aligned_cols=35 Identities=6% Similarity=-0.006 Sum_probs=25.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 14 GRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
+|+.++++. +.|. =-..++++|.++|++|+++...
T Consensus 5 ~~k~vlItG-~sg~--iG~~la~~l~~~G~~V~~~~r~ 39 (241)
T PRK07454 5 SMPRALITG-ASSG--IGKATALAFAKAGWDLALVARS 39 (241)
T ss_pred CCCEEEEeC-CCch--HHHHHHHHHHHCCCEEEEEeCC
Confidence 466666663 3443 3567899999999999998763
No 457
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=23.98 E-value=1e+02 Score=27.42 Aligned_cols=30 Identities=20% Similarity=0.073 Sum_probs=21.2
Q ss_pred CceEEEEcCcchHH-------H-HHhhcCCCeEEEeCc
Q 012563 115 SVACLITDFLWQFT-------H-VADEFKLPTIILQTH 144 (460)
Q Consensus 115 ~pDlvI~D~~~~~~-------~-~A~~lgiP~v~~~~~ 144 (460)
.||+|+.|.....- . +...+++|+|-+.=+
T Consensus 93 ~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGVAK~ 130 (208)
T cd06559 93 KPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGVAKS 130 (208)
T ss_pred CCCEEEEeCCccccCCCcchhheeeeecCCCEEEEEcc
Confidence 69999999876542 2 555667888876544
No 458
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=23.92 E-value=90 Score=29.61 Aligned_cols=32 Identities=16% Similarity=0.248 Sum_probs=26.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
|||+|+-.|..| ..+|..|+++||+|+++...
T Consensus 2 mkI~iiG~G~mG-----~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 2 MKIAVLGAGSWG-----TALAIVLARNGHDVTLWARD 33 (325)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCEEEEEECC
Confidence 688988777666 56888899999999998864
No 459
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=23.82 E-value=7.9e+02 Score=25.76 Aligned_cols=52 Identities=12% Similarity=0.148 Sum_probs=29.2
Q ss_pred eccCchhhHHHHhhCCC--e--eecCc-ccchhhHHHHHHHhhceeEeeCCccCHHHHHHHHHHHh
Q 012563 357 THSGWNSTLESICEGVP--M--ICQPC-LADQMVNARYVSHVWRVGLHLEGKLEKKEIETAIRRLM 417 (460)
Q Consensus 357 ~HGG~~s~~eal~~GvP--~--v~~P~-~~DQ~~na~~v~~~lG~G~~~~~~~~~~~l~~~i~~ll 417 (460)
.+||+|+........-+ + +.+|- +.+. .....+.+.. .+|++.|.+.|.+++
T Consensus 524 ~~GG~gs~v~~~l~~~~~~~~~~gi~d~f~~~-g~~~~l~~~~--------Gl~~~~I~~~i~~~l 580 (581)
T PRK12315 524 LDGGFGEKIARYYGNSDMKVLNYGAKKEFNDR-VPVEELYKRN--------HLTPEQIVEDILSVL 580 (581)
T ss_pred cCCCHHHHHHHHHHcCCCeEEEecCCCCCCCC-CCHHHHHHHH--------CcCHHHHHHHHHHHh
Confidence 46999887666654433 3 33443 3332 2332333321 378888888887765
No 460
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=23.81 E-value=3.2e+02 Score=26.85 Aligned_cols=63 Identities=14% Similarity=0.075 Sum_probs=37.4
Q ss_pred CCeEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEECCCCCCCchhhccCchhHHhhhCCCceEEeccchHHHhccCC
Q 012563 272 PKSVIYVSFGSVAAINETEFLEIAWGLANSRVPFLWVVRPGLVDGVEWLEALPKGYLEMVDGRGYIVQWAPQQQVLAHPA 351 (460)
Q Consensus 272 ~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~lL~~~~ 351 (460)
++.+-.|.+|.++. .+.+.+...|.+++.. ..... ..+ ....+.+-.++++.++
T Consensus 116 gktvGIIG~G~IG~-------~va~~l~a~G~~V~~~-Dp~~~--------~~~----------~~~~~~~l~ell~~aD 169 (381)
T PRK00257 116 ERTYGVVGAGHVGG-------RLVRVLRGLGWKVLVC-DPPRQ--------EAE----------GDGDFVSLERILEECD 169 (381)
T ss_pred cCEEEEECCCHHHH-------HHHHHHHHCCCEEEEE-CCccc--------ccc----------cCccccCHHHHHhhCC
Confidence 56788888888773 3444445567776543 21110 000 0124556778899998
Q ss_pred CcceeeccCch
Q 012563 352 VGGFLTHSGWN 362 (460)
Q Consensus 352 ~~~~I~HGG~~ 362 (460)
+ ++.|.-.+
T Consensus 170 i--V~lh~Plt 178 (381)
T PRK00257 170 V--ISLHTPLT 178 (381)
T ss_pred E--EEEeCcCC
Confidence 8 88887654
No 461
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=23.70 E-value=1.4e+02 Score=27.09 Aligned_cols=41 Identities=12% Similarity=0.003 Sum_probs=26.9
Q ss_pred CCCCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 012563 10 SPRNGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHT 50 (460)
Q Consensus 10 ~~~~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~ 50 (460)
.....++|+++..-.--=..-+-.....|+++||+|++++-
T Consensus 6 ~~~~~~~vL~v~aHPDDe~~g~ggtla~~~~~G~~V~v~~l 46 (237)
T COG2120 6 PMLDPLRVLVVFAHPDDEEIGCGGTLAKLAARGVEVTVVCL 46 (237)
T ss_pred ccccCCcEEEEecCCcchhhccHHHHHHHHHCCCeEEEEEc
Confidence 33456677766533333334566666777899999999884
No 462
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=23.64 E-value=7e+02 Score=24.44 Aligned_cols=165 Identities=16% Similarity=0.146 Sum_probs=0.0
Q ss_pred cccccCCHHHHHHHHHHHHhCCCCEEEEECCCCCCCchhhccC----------chhHHhhhCCCceEEeccchHH---Hh
Q 012563 281 GSVAAINETEFLEIAWGLANSRVPFLWVVRPGLVDGVEWLEAL----------PKGYLEMVDGRGYIVQWAPQQQ---VL 347 (460)
Q Consensus 281 GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~vp~~~---lL 347 (460)
.|...-....+..+++++...+.++.+.+..+.. ...+ +.+...+..-.+.+..|+||.+ +|
T Consensus 187 vslF~Ye~~~l~~ll~~~~~~~~pv~llvp~g~~-----~~~~~~~~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD~LL 261 (374)
T PF10093_consen 187 VSLFCYENAALASLLDAWAASPKPVHLLVPEGRA-----LNSLAAWLGDALLQAGDSWQRGNLTLHVLPFVPQDDYDRLL 261 (374)
T ss_pred EEEEeCCchHHHHHHHHHhcCCCCeEEEecCCcc-----HHHHHHHhccccccCccccccCCeEEEECCCCCHHHHHHHH
Q ss_pred ccCCCcceeeccCchhhHHHHhhCCCeeecCcccchhhHHHHHHHhhceeEeeCC--ccCHHHHHHHHHHHhccchH---
Q 012563 348 AHPAVGGFLTHSGWNSTLESICEGVPMICQPCLADQMVNARYVSHVWRVGLHLEG--KLEKKEIETAIRRLMVEAEG--- 422 (460)
Q Consensus 348 ~~~~~~~~I~HGG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~--~~~~~~l~~~i~~ll~~~~~--- 422 (460)
-.|++ =+=. |==|..-|..+|+|.|=-.+--|-...-..++.= ++. .--+.+...+++.+...-.+
T Consensus 262 w~cD~--NfVR-GEDSfVRAqwAgkPFvWhIYpQ~d~aHl~KL~AF------L~~y~~~~~~~~~~a~~~~~~~wN~~~~ 332 (374)
T PF10093_consen 262 WACDF--NFVR-GEDSFVRAQWAGKPFVWHIYPQEDDAHLDKLDAF------LDRYCAGLPPEAAAALRAFWRAWNGGQD 332 (374)
T ss_pred HhCcc--ceEe-cchHHHHHHHhCCCceEecCcCchhhHHHHHHHH------HHHHhhcCCHHHHHHHHHHHHHHhCCCC
Q ss_pred -----HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 012563 423 -----QEMRERITCLKKNVDACLRQGGSSHQALGRLVDHILS 459 (460)
Q Consensus 423 -----~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 459 (460)
..+.+....+++..+.--..--.....++++++++++
T Consensus 333 ~~~~w~~~~~~~~~~~~~a~~w~~~l~~~~dLa~~L~~F~~n 374 (374)
T PF10093_consen 333 APDAWQDLLEHLPEWQQHARAWRQQLLAQGDLASNLVQFVEN 374 (374)
T ss_pred chhhHHHHHHHhHHHHHHHHHHHHHHHhccCHHHHHHHHHhC
No 463
>PRK06932 glycerate dehydrogenase; Provisional
Probab=23.60 E-value=2.8e+02 Score=26.35 Aligned_cols=63 Identities=11% Similarity=0.105 Sum_probs=38.3
Q ss_pred CCCeEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEECCCCCCCchhhccCchhHHhhhCCCceEEeccchHHHhccC
Q 012563 271 APKSVIYVSFGSVAAINETEFLEIAWGLANSRVPFLWVVRPGLVDGVEWLEALPKGYLEMVDGRGYIVQWAPQQQVLAHP 350 (460)
Q Consensus 271 ~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~lL~~~ 350 (460)
.++.+..|.+|..+. ++++.++..+.+++. +.... .... ...+.+..++|+.+
T Consensus 146 ~gktvgIiG~G~IG~-------~va~~l~~fg~~V~~-~~~~~----------~~~~---------~~~~~~l~ell~~s 198 (314)
T PRK06932 146 RGSTLGVFGKGCLGT-------EVGRLAQALGMKVLY-AEHKG----------ASVC---------REGYTPFEEVLKQA 198 (314)
T ss_pred CCCEEEEECCCHHHH-------HHHHHHhcCCCEEEE-ECCCc----------cccc---------ccccCCHHHHHHhC
Confidence 367888999999773 334444455777653 22110 0011 12356778999999
Q ss_pred CCcceeeccCch
Q 012563 351 AVGGFLTHSGWN 362 (460)
Q Consensus 351 ~~~~~I~HGG~~ 362 (460)
++ ++-|.-.+
T Consensus 199 Di--v~l~~Plt 208 (314)
T PRK06932 199 DI--VTLHCPLT 208 (314)
T ss_pred CE--EEEcCCCC
Confidence 98 88886544
No 464
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=23.57 E-value=3.3e+02 Score=26.03 Aligned_cols=27 Identities=15% Similarity=0.084 Sum_probs=21.8
Q ss_pred CceEEEEcCcchHHH-HHhhcCCCeEEEeC
Q 012563 115 SVACLITDFLWQFTH-VADEFKLPTIILQT 143 (460)
Q Consensus 115 ~pDlvI~D~~~~~~~-~A~~lgiP~v~~~~ 143 (460)
+-|++|+.. .... +|..+|+|+|.++.
T Consensus 260 ~a~l~Vs~D--SGp~HlAaA~g~p~v~Lfg 287 (344)
T TIGR02201 260 HARLFIGVD--SVPMHMAAALGTPLVALFG 287 (344)
T ss_pred hCCEEEecC--CHHHHHHHHcCCCEEEEEC
Confidence 568999884 5555 99999999998764
No 465
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=23.57 E-value=1.1e+02 Score=29.11 Aligned_cols=32 Identities=22% Similarity=0.305 Sum_probs=24.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
|||+|+..+.. .+...++|.++||+|..+.+.
T Consensus 1 mkIvf~Gs~~~-----a~~~L~~L~~~~~~i~~Vvt~ 32 (313)
T TIGR00460 1 LRIVFFGTPTF-----SLPVLEELREDNFEVVGVVTQ 32 (313)
T ss_pred CEEEEECCCHH-----HHHHHHHHHhCCCcEEEEEcC
Confidence 78888865543 366778888899999877763
No 466
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=23.41 E-value=9.6 Score=20.59 Aligned_cols=17 Identities=24% Similarity=0.593 Sum_probs=12.7
Q ss_pred CchhhHHHHhhCCCeee
Q 012563 360 GWNSTLESICEGVPMIC 376 (460)
Q Consensus 360 G~~s~~eal~~GvP~v~ 376 (460)
|.|+++-.|+.|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 56888888888888765
No 467
>PLN02727 NAD kinase
Probab=23.38 E-value=1.1e+02 Score=33.43 Aligned_cols=54 Identities=9% Similarity=0.048 Sum_probs=36.8
Q ss_pred ccCCCcceeeccCchhhHHHHhh----CCCeeecCcccchhhHHHHHHHhhceeEeeCCccCHHHHHHHHHHHhcc
Q 012563 348 AHPAVGGFLTHSGWNSTLESICE----GVPMICQPCLADQMVNARYVSHVWRVGLHLEGKLEKKEIETAIRRLMVE 419 (460)
Q Consensus 348 ~~~~~~~~I~HGG~~s~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~l~~~i~~ll~~ 419 (460)
..+++ +|+=||-||++.+... ++|++.+-+. -+|.-. .++.+++.++|.+++++
T Consensus 742 ~~~DL--VIvLGGDGTlLrAar~~~~~~iPILGINlG--------------rLGFLT--di~~ee~~~~L~~Il~G 799 (986)
T PLN02727 742 ERVDF--VACLGGDGVILHASNLFRGAVPPVVSFNLG--------------SLGFLT--SHYFEDFRQDLRQVIHG 799 (986)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEeCC--------------Cccccc--cCCHHHHHHHHHHHHcC
Confidence 34566 9999999999999775 5777774332 111111 46777888888888865
No 468
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=23.38 E-value=1.5e+02 Score=27.77 Aligned_cols=39 Identities=10% Similarity=-0.063 Sum_probs=28.9
Q ss_pred CCcEEEEEcCCCC-CChH---HHHHHHHHHHhCCCeEEEEeCC
Q 012563 13 NGRRVILFPLPFQ-GHIN---PMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 13 ~~~~il~~~~~~~-GHv~---p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
.+++|++++.+.. =|-. -...+.++|.++||+|.++...
T Consensus 3 ~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~ 45 (304)
T PRK01372 3 MFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPG 45 (304)
T ss_pred CCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecC
Confidence 4568998885533 2333 4688999999999999998754
No 469
>PRK08462 biotin carboxylase; Validated
Probab=23.29 E-value=7.1e+02 Score=24.87 Aligned_cols=33 Identities=12% Similarity=0.042 Sum_probs=24.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKF 52 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~ 52 (460)
.|||++..+.. .+.+++.+.+.|++|+.+.+..
T Consensus 5 k~ili~~~g~~-----~~~~~~~~~~~G~~~v~~~~~~ 37 (445)
T PRK08462 5 KRILIANRGEI-----ALRAIRTIQEMGKEAIAIYSTA 37 (445)
T ss_pred CEEEEECCcHH-----HHHHHHHHHHcCCCEEEEechh
Confidence 47777764433 5688888888899998887643
No 470
>CHL00067 rps2 ribosomal protein S2
Probab=23.16 E-value=66 Score=29.10 Aligned_cols=36 Identities=14% Similarity=-0.002 Sum_probs=25.6
Q ss_pred CceEEEEcCcc--hHHH-HHhhcCCCeEEEeCccHHHHH
Q 012563 115 SVACLITDFLW--QFTH-VADEFKLPTIILQTHSVSGYL 150 (460)
Q Consensus 115 ~pDlvI~D~~~--~~~~-~A~~lgiP~v~~~~~~~~~~~ 150 (460)
.||+||.-... ..+. -|.++|||.|.+.-+.+.+..
T Consensus 161 ~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn~~p~~ 199 (230)
T CHL00067 161 LPDIVIIIDQQEEYTALRECRKLGIPTISILDTNCDPDL 199 (230)
T ss_pred CCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCCCCccc
Confidence 58888765444 2355 999999999998777555443
No 471
>PRK10749 lysophospholipase L2; Provisional
Probab=23.11 E-value=1.4e+02 Score=28.38 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=29.0
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 012563 16 RVILFPLPFQGHINPMLQLGSILYSKGFSITIIHT 50 (460)
Q Consensus 16 ~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~ 50 (460)
.++++.+|..+|......++..|.++|+.|..+--
T Consensus 55 ~~vll~HG~~~~~~~y~~~~~~l~~~g~~v~~~D~ 89 (330)
T PRK10749 55 RVVVICPGRIESYVKYAELAYDLFHLGYDVLIIDH 89 (330)
T ss_pred cEEEEECCccchHHHHHHHHHHHHHCCCeEEEEcC
Confidence 46677778899999999999999999998865543
No 472
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=23.10 E-value=1.6e+02 Score=27.68 Aligned_cols=23 Identities=22% Similarity=0.106 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCC
Q 012563 29 NPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 29 ~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
.+-+.+++.|+++|++|..+..+
T Consensus 11 ~r~~~~~~~l~~~g~~v~~~g~~ 33 (287)
T TIGR02853 11 ARQLELIRKLEELDAKISLIGFD 33 (287)
T ss_pred HHHHHHHHHHHHCCCEEEEEecc
Confidence 46788999999999999999875
No 473
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=23.08 E-value=1.1e+02 Score=23.98 Aligned_cols=57 Identities=14% Similarity=0.156 Sum_probs=36.6
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCC
Q 012563 16 RVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNSPNSCNYPHFDFHSISDGLT 73 (460)
Q Consensus 16 ~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (460)
.++|+ ..-.|-..-.+..++.++++|..|..+|............+...+.+|++..
T Consensus 45 dl~I~-iS~SG~t~e~i~~~~~a~~~g~~iI~IT~~~~l~~~~~~~~~~~~~~p~~~~ 101 (119)
T cd05017 45 TLVIA-VSYSGNTEETLSAVEQAKERGAKIVAITSGGKLLEMAREHGVPVIIIPKGLQ 101 (119)
T ss_pred CEEEE-EECCCCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHcCCcEEECCCCCC
Confidence 34333 4556777778888899999999999998643222222223566777775443
No 474
>PRK06487 glycerate dehydrogenase; Provisional
Probab=23.05 E-value=3.2e+02 Score=26.02 Aligned_cols=62 Identities=16% Similarity=0.179 Sum_probs=38.0
Q ss_pred CCCeEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEECCCCCCCchhhccCchhHHhhhCCCceEEeccchHHHhccC
Q 012563 271 APKSVIYVSFGSVAAINETEFLEIAWGLANSRVPFLWVVRPGLVDGVEWLEALPKGYLEMVDGRGYIVQWAPQQQVLAHP 350 (460)
Q Consensus 271 ~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~lL~~~ 350 (460)
.++.+..|.+|..+. .+++.+...|.+++..-.... +. ...++.-.++|+.+
T Consensus 147 ~gktvgIiG~G~IG~-------~vA~~l~~fgm~V~~~~~~~~----------~~-----------~~~~~~l~ell~~s 198 (317)
T PRK06487 147 EGKTLGLLGHGELGG-------AVARLAEAFGMRVLIGQLPGR----------PA-----------RPDRLPLDELLPQV 198 (317)
T ss_pred CCCEEEEECCCHHHH-------HHHHHHhhCCCEEEEECCCCC----------cc-----------cccccCHHHHHHhC
Confidence 367888999999873 334444445777654321110 01 12345678899999
Q ss_pred CCcceeeccCch
Q 012563 351 AVGGFLTHSGWN 362 (460)
Q Consensus 351 ~~~~~I~HGG~~ 362 (460)
++ ++-|.-.+
T Consensus 199 Di--v~l~lPlt 208 (317)
T PRK06487 199 DA--LTLHCPLT 208 (317)
T ss_pred CE--EEECCCCC
Confidence 98 88886654
No 475
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=23.03 E-value=1.5e+02 Score=27.09 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=30.2
Q ss_pred EEEEEcCC---CCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012563 16 RVILFPLP---FQGHINPMLQLGSILYSKGFSITIIHTKFN 53 (460)
Q Consensus 16 ~il~~~~~---~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~ 53 (460)
|..|++.+ +.|-=.-...++..|.+||++|+..--++.
T Consensus 1 kyi~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpY 41 (255)
T cd03113 1 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTAQKLDPY 41 (255)
T ss_pred CEEEEeCCcccCcchHHHHHHHHHHHHHCCCeEEEEeeccc
Confidence 35667766 567778889999999999999999876533
No 476
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=22.94 E-value=1.3e+02 Score=24.40 Aligned_cols=54 Identities=13% Similarity=0.023 Sum_probs=39.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCCCCC---CCCCCceEEeCC
Q 012563 16 RVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNSPNS---CNYPHFDFHSIS 69 (460)
Q Consensus 16 ~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~~~~---~~~~~~~~~~~~ 69 (460)
+|++-+..+-+|-.----++..|..+|++|+.....-..+.. ....+.+++.++
T Consensus 1 ~vvigtv~gD~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~~adiVglS 57 (128)
T cd02072 1 TIVLGVIGSDCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETDADAILVS 57 (128)
T ss_pred CEEEEEeCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEe
Confidence 478888999999999999999999999999998874332222 112356666665
No 477
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=22.83 E-value=1.6e+02 Score=23.67 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=26.3
Q ss_pred CeEEEEEecccccCCHHHHHHHHHHHHh-C-CCCEEEEEC
Q 012563 273 KSVIYVSFGSVAAINETEFLEIAWGLAN-S-RVPFLWVVR 310 (460)
Q Consensus 273 ~~~v~vs~GS~~~~~~~~~~~~~~al~~-~-~~~~i~~~~ 310 (460)
+.+++++|||......+.+..+.+.+++ . +..+-|.+.
T Consensus 1 ~aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~aft 40 (127)
T cd03412 1 KAILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFT 40 (127)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 3689999999887444567777777753 2 456666664
No 478
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=22.79 E-value=1.7e+02 Score=28.74 Aligned_cols=36 Identities=14% Similarity=0.200 Sum_probs=26.4
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 12 RNGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 12 ~~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
.+.|+|+++ |+.|-+ -..++++|.++||+|+.++..
T Consensus 58 ~~~~kVLVt--GatG~I--G~~l~~~Ll~~G~~V~~l~R~ 93 (390)
T PLN02657 58 PKDVTVLVV--GATGYI--GKFVVRELVRRGYNVVAVARE 93 (390)
T ss_pred CCCCEEEEE--CCCcHH--HHHHHHHHHHCCCEEEEEEec
Confidence 345677665 455544 567899999999999998864
No 479
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=22.78 E-value=1.3e+02 Score=22.10 Aligned_cols=35 Identities=9% Similarity=0.066 Sum_probs=28.9
Q ss_pred EEEEEcCCCCCChHHH-HHHHHHHHhCCCeEEEEeC
Q 012563 16 RVILFPLPFQGHINPM-LQLGSILYSKGFSITIIHT 50 (460)
Q Consensus 16 ~il~~~~~~~GHv~p~-l~lA~~L~~rGh~V~~~~~ 50 (460)
||+++|..+.|+-.-. -.+=+.+.++|.++.....
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~ 36 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIEVEVSAG 36 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTECEEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCceEEEEe
Confidence 6899998899888888 7788888888977777665
No 480
>PRK10037 cell division protein; Provisional
Probab=22.74 E-value=1.2e+02 Score=27.55 Aligned_cols=29 Identities=17% Similarity=0.032 Sum_probs=25.1
Q ss_pred CCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 23 PFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 23 ~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
|+-|-..-...||..|+++|++|.++=.+
T Consensus 11 GGvGKTT~a~nLA~~La~~G~rVLlID~D 39 (250)
T PRK10037 11 GGVGTTSITAALAWSLQMLGENVLVIDAC 39 (250)
T ss_pred CCccHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 36688899999999999999999998444
No 481
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=22.65 E-value=1.6e+02 Score=28.44 Aligned_cols=27 Identities=19% Similarity=0.091 Sum_probs=21.6
Q ss_pred CceEEEEcCcchHHH-HHhhcCCCeEEEeC
Q 012563 115 SVACLITDFLWQFTH-VADEFKLPTIILQT 143 (460)
Q Consensus 115 ~pDlvI~D~~~~~~~-~A~~lgiP~v~~~~ 143 (460)
+-|++|+.. .... +|..+|+|+|.++-
T Consensus 262 ~a~l~v~nD--SGp~HlAaA~g~P~v~lfG 289 (352)
T PRK10422 262 HAQLFIGVD--SAPAHIAAAVNTPLICLFG 289 (352)
T ss_pred hCCEEEecC--CHHHHHHHHcCCCEEEEEC
Confidence 468999885 4455 99999999998764
No 482
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=22.47 E-value=4.4e+02 Score=24.75 Aligned_cols=110 Identities=15% Similarity=0.063 Sum_probs=58.3
Q ss_pred CCceeecccccCCCCCCCCccccccchhhhhccCCCCeEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEECCCCCCC
Q 012563 237 IPVFPIGPFHKYFPASSSSLLSQDQSSISWLDKQAPKSVIYVSFGSVAAINETEFLEIAWGLANSRVPFLWVVRPGLVDG 316 (460)
Q Consensus 237 ~pv~~vGpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~ 316 (460)
.|=.|+|.....+.. .-....++..+....+-+++-+-........+...+..+.++++++|..+++-++......
T Consensus 96 ~pdrf~~~~~v~p~~----~~~a~~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~~ 171 (293)
T COG2159 96 YPDRFVGFARVDPRD----PEAAAEELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPGGA 171 (293)
T ss_pred CCcceeeeeeeCCCc----hHHHHHHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCCCc
Confidence 445566655544432 1111223455554333333333233333334455578899999999999999777643211
Q ss_pred chhhccCchhHHhhhCCCceEEeccc---hHHHhccCCCcceeeccC--chhhHHH
Q 012563 317 VEWLEALPKGYLEMVDGRGYIVQWAP---QQQVLAHPAVGGFLTHSG--WNSTLES 367 (460)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~vp---~~~lL~~~~~~~~I~HGG--~~s~~ea 367 (460)
. +... ...| ...+...+++++++.|.| ..=..|+
T Consensus 172 ~-----~~~~------------~~~p~~~~~va~~fP~l~IVl~H~G~~~p~~~~a 210 (293)
T COG2159 172 G-----LEKG------------HSDPLYLDDVARKFPELKIVLGHMGEDYPWELEA 210 (293)
T ss_pred c-----cccC------------CCCchHHHHHHHHCCCCcEEEEecCCCCchhHHH
Confidence 0 0000 0112 233556789999999999 4444444
No 483
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=22.40 E-value=3.9e+02 Score=23.43 Aligned_cols=133 Identities=11% Similarity=0.082 Sum_probs=80.8
Q ss_pred eEEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEECCCCCCCchhhccCchhHHhhhCCCceEEeccchHHHhccCCCc
Q 012563 274 SVIYVSFGSVAAINETEFLEIAWGLANSRVPFLWVVRPGLVDGVEWLEALPKGYLEMVDGRGYIVQWAPQQQVLAHPAVG 353 (460)
Q Consensus 274 ~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~lL~~~~~~ 353 (460)
++.++....... +..+-.++.+.+...+.++++..+.= .=+.+.|.++.++++. =-||++
T Consensus 52 pt~~~~~k~~~~-r~~~d~~l~~~l~~~~~dlvvLAGyM--------rIL~~~fl~~~~grIl----------NIHPSL- 111 (200)
T COG0299 52 PTVVLDRKEFPS-REAFDRALVEALDEYGPDLVVLAGYM--------RILGPEFLSRFEGRIL----------NIHPSL- 111 (200)
T ss_pred CEEEeccccCCC-HHHHHHHHHHHHHhcCCCEEEEcchH--------HHcCHHHHHHhhcceE----------ecCccc-
Confidence 444444444332 34455669999999888888776652 3355666655554332 238888
Q ss_pred ceeeccCchhhHHHHhhCCCeeecCccc--chhhHHHHHHHhhceeEeeCCccCHHHHHHHHHHHhccchHHHHHHHHHH
Q 012563 354 GFLTHSGWNSTLESICEGVPMICQPCLA--DQMVNARYVSHVWRVGLHLEGKLEKKEIETAIRRLMVEAEGQEMRERITC 431 (460)
Q Consensus 354 ~~I~HGG~~s~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~lG~G~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~ 431 (460)
.=.++|..+..+|+.+|+..-++-.+. +..+-+-.+.+. -+ -+...-|.|.|.+.|...-. .-|-+..+.
T Consensus 112 -LP~f~G~h~~~~A~~aG~k~sG~TVH~V~e~vD~GpII~Q~-~V--pv~~~Dt~etl~~RV~~~Eh----~lyp~~v~~ 183 (200)
T COG0299 112 -LPAFPGLHAHEQALEAGVKVSGCTVHFVTEGVDTGPIIAQA-AV--PVLPGDTAETLEARVLEQEH----RLYPLAVKL 183 (200)
T ss_pred -ccCCCCchHHHHHHHcCCCccCcEEEEEccCCCCCCeEEEE-ee--eecCCCCHHHHHHHHHHHHH----HHHHHHHHH
Confidence 888999999999999999987766532 333333333331 11 12223478888888765332 455555555
Q ss_pred HHH
Q 012563 432 LKK 434 (460)
Q Consensus 432 l~~ 434 (460)
+.+
T Consensus 184 ~~~ 186 (200)
T COG0299 184 LAE 186 (200)
T ss_pred HHh
Confidence 544
No 484
>PRK12827 short chain dehydrogenase; Provisional
Probab=22.38 E-value=1.8e+02 Score=25.87 Aligned_cols=33 Identities=18% Similarity=0.288 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 012563 14 GRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHT 50 (460)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~ 50 (460)
.|++++. |+.|.+ -..+|+.|.++||+|+++..
T Consensus 6 ~~~ilIt--Gasg~i--G~~la~~l~~~g~~v~~~~~ 38 (249)
T PRK12827 6 SRRVLIT--GGSGGL--GRAIAVRLAADGADVIVLDI 38 (249)
T ss_pred CCEEEEE--CCCChH--HHHHHHHHHHCCCeEEEEcC
Confidence 4555544 444555 36889999999999988764
No 485
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=22.36 E-value=1.5e+02 Score=23.90 Aligned_cols=37 Identities=11% Similarity=0.100 Sum_probs=25.5
Q ss_pred cCCCCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 012563 9 ISPRNGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHT 50 (460)
Q Consensus 9 ~~~~~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~ 50 (460)
.....+|||.|+-.|=.|- .||+.|.++||+|+-+..
T Consensus 5 ~~~~~~l~I~iIGaGrVG~-----~La~aL~~ag~~v~~v~s 41 (127)
T PF10727_consen 5 ATQAARLKIGIIGAGRVGT-----ALARALARAGHEVVGVYS 41 (127)
T ss_dssp -------EEEEECTSCCCC-----HHHHHHHHTTSEEEEESS
T ss_pred ccCCCccEEEEECCCHHHH-----HHHHHHHHCCCeEEEEEe
Confidence 3356789999998886663 689999999999988765
No 486
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=22.35 E-value=2e+02 Score=26.76 Aligned_cols=36 Identities=17% Similarity=0.119 Sum_probs=28.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 14 GRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 14 ~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
..+++++..|. =+-|++.+++.|.++|++|+++-..
T Consensus 98 ~~~~llIaGGi--GiaPl~~l~~~l~~~~~~v~l~~g~ 133 (281)
T PRK06222 98 FGTVVCVGGGV--GIAPVYPIAKALKEAGNKVITIIGA 133 (281)
T ss_pred CCeEEEEeCcC--cHHHHHHHHHHHHHCCCeEEEEEec
Confidence 35788887443 3899999999999999999887653
No 487
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=22.31 E-value=1.5e+02 Score=28.48 Aligned_cols=27 Identities=19% Similarity=0.194 Sum_probs=21.6
Q ss_pred CceEEEEcCcchHHH-HHhhcCCCeEEEeC
Q 012563 115 SVACLITDFLWQFTH-VADEFKLPTIILQT 143 (460)
Q Consensus 115 ~pDlvI~D~~~~~~~-~A~~lgiP~v~~~~ 143 (460)
+-|++|+.. .... +|..+|+|+|.++.
T Consensus 261 ~a~l~I~nD--TGp~HlAaA~g~P~valfG 288 (348)
T PRK10916 261 ACKAIVTND--SGLMHVAAALNRPLVALYG 288 (348)
T ss_pred hCCEEEecC--ChHHHHHHHhCCCEEEEEC
Confidence 468999885 4455 99999999998765
No 488
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=22.21 E-value=1.6e+02 Score=29.09 Aligned_cols=37 Identities=11% Similarity=0.041 Sum_probs=30.2
Q ss_pred CCcEEEEEcC--CCCCChHHHHHHHHHHHhCCCeEEEEe
Q 012563 13 NGRRVILFPL--PFQGHINPMLQLGSILYSKGFSITIIH 49 (460)
Q Consensus 13 ~~~~il~~~~--~~~GHv~p~l~lA~~L~~rGh~V~~~~ 49 (460)
++++|+.+.. |+-|-..-...||..|+.+|++|.++=
T Consensus 104 ~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlID 142 (387)
T PHA02519 104 KNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIE 142 (387)
T ss_pred CCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Confidence 4466655554 477999999999999999999999885
No 489
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=22.17 E-value=1.2e+02 Score=31.20 Aligned_cols=26 Identities=8% Similarity=0.217 Sum_probs=21.5
Q ss_pred CceEEEEcCcchHHH-HHhhcCCCeEEEeC
Q 012563 115 SVACLITDFLWQFTH-VADEFKLPTIILQT 143 (460)
Q Consensus 115 ~pDlvI~D~~~~~~~-~A~~lgiP~v~~~~ 143 (460)
+||+||.+. ... +|.++|||++.++.
T Consensus 364 ~pdliiG~~---~er~~a~~lgip~~~i~~ 390 (511)
T TIGR01278 364 EPELVLGTQ---MERHSAKRLDIPCGVISA 390 (511)
T ss_pred CCCEEEECh---HHHHHHHHcCCCEEEecC
Confidence 799999994 456 99999999987544
No 490
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=22.05 E-value=1.2e+02 Score=26.12 Aligned_cols=28 Identities=18% Similarity=0.172 Sum_probs=22.8
Q ss_pred CCChHH-HHHHHHHHHh-CCCeEEEEeCCC
Q 012563 25 QGHINP-MLQLGSILYS-KGFSITIIHTKF 52 (460)
Q Consensus 25 ~GHv~p-~l~lA~~L~~-rGh~V~~~~~~~ 52 (460)
.||... ...+.+.|++ +||+|.++.++.
T Consensus 9 sg~~l~e~v~~l~~L~~~~g~eV~vv~S~~ 38 (174)
T TIGR02699 9 SGDKLPETYSIMKDVKNRYGDEIDVFLSKA 38 (174)
T ss_pred cHHHHHHHHHHHHHHHHhcCCEEEEEECHh
Confidence 378766 8899999984 599999999853
No 491
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=22.04 E-value=1.8e+02 Score=26.61 Aligned_cols=43 Identities=19% Similarity=0.085 Sum_probs=37.4
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012563 12 RNGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFNS 54 (460)
Q Consensus 12 ~~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~~ 54 (460)
.++.-+++.-.|+.|...-.++++...+++|..|.+++.+...
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~ 63 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESP 63 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCH
Confidence 4456788888899999999999999999999999999986433
No 492
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=21.99 E-value=1.4e+02 Score=30.64 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=33.1
Q ss_pred cEEEEEcCC---CCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012563 15 RRVILFPLP---FQGHINPMLQLGSILYSKGFSITIIHTKFN 53 (460)
Q Consensus 15 ~~il~~~~~---~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~ 53 (460)
||.+|++.| +.|-=.-...|+..|.+||++|+.+--+++
T Consensus 1 ~k~i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpY 42 (525)
T TIGR00337 1 MKYIFVTGGVVSSLGKGITAASIGRLLKARGLKVTIIKIDPY 42 (525)
T ss_pred CcEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeeccc
Confidence 578889887 567778899999999999999999887643
No 493
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=21.92 E-value=76 Score=26.89 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=32.7
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC-CCCCCCCCCceEEeCC
Q 012563 13 NGRRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTKFN-SPNSCNYPHFDFHSIS 69 (460)
Q Consensus 13 ~~~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~~~-~~~~~~~~~~~~~~~~ 69 (460)
+..+|+++-++++||- .|.-|++.|++|++...+.. ........|++..++.
T Consensus 3 ~~k~IAViGyGsQG~a-----~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~ 55 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHA-----HALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVA 55 (165)
T ss_dssp CTSEEEEES-SHHHHH-----HHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHH
T ss_pred CCCEEEEECCChHHHH-----HHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHH
Confidence 3578999999999874 58889999999999887533 1111223566655444
No 494
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=21.88 E-value=1.1e+02 Score=29.57 Aligned_cols=28 Identities=18% Similarity=0.236 Sum_probs=25.4
Q ss_pred CCCChHHHHHHHHHHHh-CCCeEEEEeCC
Q 012563 24 FQGHINPMLQLGSILYS-KGFSITIIHTK 51 (460)
Q Consensus 24 ~~GHv~p~l~lA~~L~~-rGh~V~~~~~~ 51 (460)
=+|++--+..||+.|++ +|+.|.+.+.+
T Consensus 10 NyGDIGV~WRLArqLa~e~g~~VrLwvDd 38 (371)
T TIGR03837 10 NYGDIGVCWRLARQLAAEHGHQVRLWVDD 38 (371)
T ss_pred CCcchHHHHHHHHHHHHHhCCEEEEEECC
Confidence 47999999999999987 69999999976
No 495
>PRK06914 short chain dehydrogenase; Provisional
Probab=21.82 E-value=1.5e+02 Score=27.17 Aligned_cols=33 Identities=12% Similarity=0.114 Sum_probs=23.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 16 RVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 16 ~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
+.++++ |+.|.+ ...+++.|+++||+|+.++..
T Consensus 4 k~~lIt-Gasg~i--G~~la~~l~~~G~~V~~~~r~ 36 (280)
T PRK06914 4 KIAIVT-GASSGF--GLLTTLELAKKGYLVIATMRN 36 (280)
T ss_pred CEEEEE-CCCchH--HHHHHHHHHhCCCEEEEEeCC
Confidence 345555 444433 678889999999999988763
No 496
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=21.78 E-value=1e+02 Score=29.05 Aligned_cols=31 Identities=13% Similarity=0.194 Sum_probs=24.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHT 50 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~ 50 (460)
|+|.|+-.|..| ..+|+.|.++||+|++...
T Consensus 1 m~Ig~IGlG~MG-----~~ma~~L~~~G~~v~v~~~ 31 (292)
T PRK15059 1 MKLGFIGLGIMG-----TPMAINLARAGHQLHVTTI 31 (292)
T ss_pred CeEEEEccCHHH-----HHHHHHHHHCCCeEEEEeC
Confidence 567777655555 7899999999999987654
No 497
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=21.75 E-value=4.4e+02 Score=22.35 Aligned_cols=34 Identities=12% Similarity=0.220 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC
Q 012563 423 QEMRERITCLKKNVDACLRQGGSSHQALGRLVDHILSF 460 (460)
Q Consensus 423 ~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 460 (460)
.++-.+.+++++.++ .|......-++|-+++++|
T Consensus 142 ~~~~~ri~~~~~~~~----~g~~~~~~~~~~~~i~~r~ 175 (177)
T PF09580_consen 142 PDIFDRIRNLANRIR----NGRPVSGFNDEIKEIVRRM 175 (177)
T ss_pred HHHHHHHHHHHHHHH----CCCChHHHHHHHHHHHHhh
Confidence 778899999999998 6766666666666666553
No 498
>PRK08309 short chain dehydrogenase; Provisional
Probab=21.75 E-value=1.7e+02 Score=25.12 Aligned_cols=32 Identities=19% Similarity=0.444 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 012563 15 RRVILFPLPFQGHINPMLQLGSILYSKGFSITIIHTK 51 (460)
Q Consensus 15 ~~il~~~~~~~GHv~p~l~lA~~L~~rGh~V~~~~~~ 51 (460)
|+++++- ++ | + ...+++.|.++|++|++++..
T Consensus 1 m~vlVtG-Gt-G-~--gg~la~~L~~~G~~V~v~~R~ 32 (177)
T PRK08309 1 MHALVIG-GT-G-M--LKRVSLWLCEKGFHVSVIARR 32 (177)
T ss_pred CEEEEEC-cC-H-H--HHHHHHHHHHCcCEEEEEECC
Confidence 5555443 44 5 2 246999999999999998753
No 499
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=21.71 E-value=1.1e+02 Score=31.36 Aligned_cols=25 Identities=4% Similarity=0.278 Sum_probs=21.0
Q ss_pred CceEEEEcCcchHHH-HHhhcCCCeEEEe
Q 012563 115 SVACLITDFLWQFTH-VADEFKLPTIILQ 142 (460)
Q Consensus 115 ~pDlvI~D~~~~~~~-~A~~lgiP~v~~~ 142 (460)
+||+||.+. +.. +|+++|||++.++
T Consensus 374 ~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 374 EPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred CCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 799999995 455 8999999998765
No 500
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=21.70 E-value=1.5e+02 Score=26.42 Aligned_cols=28 Identities=18% Similarity=0.344 Sum_probs=21.7
Q ss_pred CCCChHHHHH---HHHHHHhCCCeEEEEeCC
Q 012563 24 FQGHINPMLQ---LGSILYSKGFSITIIHTK 51 (460)
Q Consensus 24 ~~GHv~p~l~---lA~~L~~rGh~V~~~~~~ 51 (460)
-.||+.+.+. +++-|..+|++|.+++.-
T Consensus 35 HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~ 65 (213)
T cd00672 35 HIGHARTYVVFDVLRRYLEDLGYKVRYVQNI 65 (213)
T ss_pred ccccchhHHHHHHHHHHHHhcCCeeEEEeec
Confidence 5699988653 567777789999999874
Done!