BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012564
(460 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O94260|G3BP_SCHPO Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=nxt3 PE=1 SV=1
Length = 434
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 118/438 (26%), Positives = 201/438 (45%), Gaps = 57/438 (13%)
Query: 14 VGNAFVEQYYHILHSTPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLDYKNY 73
+G FV++YY L+ P + FY S L D ++ + I+ KIL LD++N
Sbjct: 18 IGWMFVQEYYTYLNKEPNRLHCFYTKKSTLIHGDEGESISLCHGQQEIHNKILDLDFQNC 77
Query: 74 KAEIKTADAQNSHKEGVTVLVTGCLTGKDNLRRKFAQSFFLAPQDNGYFVLNDVFRYVDD 133
K I D+ S G+ + V G ++ K L RKFAQ+FFLA Q NGYFVLND+FR++ +
Sbjct: 78 KVLISNVDSLASSNGGIVIQVLGEMSNKGKLSRKFAQTFFLAEQPNGYFVLNDIFRFLRE 137
Query: 134 GEVLEKYPANSID----DAPAAPSIPDID-HTHVP---------DPPAPDP--VTSHV-- 175
E+ ++++ D + P + + H+P DP A + T+ +
Sbjct: 138 DVEEEEESPDAVEKEKKDVASEPYVNGVQSQEHLPSAKEEGHYQDPAATENNFATAALIS 197
Query: 176 EEDQNISERVYEPSEQERQLVTERE--AVVESQSYAVETDA------SAMVESASSSALE 227
E ++++ E+ VTE + V Q ++ +A +A AS + +
Sbjct: 198 NETDSLNQATLAVPEEPVIQVTEASVPSFVSQQENQLQDEALTSNSKNADAIGASDANVA 257
Query: 228 DAPKKSYASIVRVVKGGSGPTKVYVPTNTVKVTTKKTENQPIKSENPPSSETSAPVSTDA 287
AP KS+A ++ + P V + +T T Q +K N + +T P A
Sbjct: 258 TAP-KSWADLI----ARNHPD---VKSQASVSSTASTTGQTVKGVN--ADQTQQPT---A 304
Query: 288 PESSNAHEEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQ 347
P + + E+ S++++N+P + SL+ FGPVK I+ KG +V+F
Sbjct: 305 PYTQS--NELLETSVFVKNIPPETSDVSLKSAMSIFGPVK--AIEFARRKGT--AYVDFV 358
Query: 348 SSSSVDNAIQASPITIGGQEAFVEKKKKTRVGSGRGRFPSERERFRNDSFRGRGSYGGGR 407
+ V A+ + I +E+++ R+ S G+F ++ ND++ G R
Sbjct: 359 NHECVQLALNKKTLQINNATLNIEERR--RLFS--GKFNKSGDKKSNDNYNGM-----KR 409
Query: 408 SFGRNEYGNRVEFQVRGR 425
+F + GNR F R +
Sbjct: 410 NFRK---GNRGAFDGRSK 424
>sp|P97379|G3BP2_MOUSE Ras GTPase-activating protein-binding protein 2 OS=Mus musculus
GN=G3bp2 PE=1 SV=2
Length = 482
Score = 99.0 bits (245), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 113/412 (27%), Positives = 174/412 (42%), Gaps = 40/412 (9%)
Query: 9 PSAQVVGNAFVEQYYHILHSTPELVFRFY--QDSSVLSRPDSNGV-MTSVTTMEGINQKI 65
PS +VG FV QYY +L+ PE + RFY S V D++G +V I+ K+
Sbjct: 6 PSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKV 65
Query: 66 LSLDYKNYKAEIKTADAQNSHKEGVTVLVTGCLTGKDNLRRKFAQSFFLAPQ---DNGYF 122
LSL++ +I+ DA + +GV V V G L+ RKF Q+F LAP+ N ++
Sbjct: 66 LSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSVPNKFY 125
Query: 123 VLNDVFRYVDDGEVLEKYPANSIDDAPAAPSIPDIDHTHVPDPPAPD---------PVTS 173
V ND+FRY D EV +++ D P+P + PVT+
Sbjct: 126 VHNDMFRYED--EVFGDSEPELDEESEDEVEEEQEDRQPSPEPVQENANSAYYDAHPVTN 183
Query: 174 HVEEDQNISERVYEPSEQERQLVTEREAVVESQSYAVETDASAMVESASSSALEDAPKK- 232
+EE S EP + E + VE + + SA A ++L P K
Sbjct: 184 GIEEPLEESSHEPEPEPESETKTEELKPQVEEKHLEELEEKSATPPPAEPASLPQEPPKA 243
Query: 233 -SYASIVR-------VVKGGSGPTKVYVPTNTVKVTTK-KTENQP--IKSENP-----PS 276
S+AS+ V P V P + +V K + ++QP ++ + P
Sbjct: 244 FSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQPRVDAKPEVQSQPPRVREQRPRERPGFP 303
Query: 277 SETSAPVSTDAPESSNAHEEV----EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQ 332
P D ++ + + + + H +++ NLP + L+ F FG V + I
Sbjct: 304 PRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVELRIN 363
Query: 333 VRHNKGYC--FGFVEFQSSSSVDNAIQASPITIGGQEAFVEKKKKTRVGSGR 382
+ G FGFV F S V + A PI G+ ++KKTR R
Sbjct: 364 TKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARER 415
>sp|Q32LC7|G3BP1_BOVIN Ras GTPase-activating protein-binding protein 1 OS=Bos taurus
GN=G3BP PE=2 SV=1
Length = 465
Score = 89.0 bits (219), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 77/131 (58%), Gaps = 6/131 (4%)
Query: 9 PSAQVVGNAFVEQYYHILHSTPELVFRFYQDSS--VLSRPDSNGV-MTSVTTMEGINQKI 65
PS +VG FV QYY +L+ P+++ RFY +S V DSNG +V + I++K+
Sbjct: 6 PSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKV 65
Query: 66 LSLDYKNYKAEIKTADAQNSHKEGVTVLVTGCLTGKDNLRRKFAQSFFLAPQD---NGYF 122
+S ++ N +I+ DA + +GV V V G L+ + R+F Q+F LAP+ N ++
Sbjct: 66 MSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFY 125
Query: 123 VLNDVFRYVDD 133
V ND+FRY D+
Sbjct: 126 VHNDIFRYQDE 136
>sp|Q5R9L3|G3BP2_PONAB Ras GTPase-activating protein-binding protein 2 OS=Pongo abelii
GN=G3BP2 PE=2 SV=1
Length = 482
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 111/412 (26%), Positives = 168/412 (40%), Gaps = 40/412 (9%)
Query: 9 PSAQVVGNAFVEQYYHILHSTPELVFRFY--QDSSVLSRPDSNGV-MTSVTTMEGINQKI 65
PS +VG FV QYY +L+ PE + RFY S V D++G +V I+ K+
Sbjct: 6 PSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKV 65
Query: 66 LSLDYKNYKAEIKTADAQNSHKEGVTVLVTGCLTGKDNLRRKFAQSFFLAPQ---DNGYF 122
LSL++ +I+ DA + +GV V V G L+ RKF Q+F LAP+ N ++
Sbjct: 66 LSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSVPNKFY 125
Query: 123 VLNDVFRYVDDGEVLEKYPANSIDDAPAAPSIPDIDHTHVPDPPAPD---------PVTS 173
V ND+FRY D EV +++ + P+P + PVT+
Sbjct: 126 VHNDMFRYED--EVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHPVTN 183
Query: 174 HVEEDQNISERVYEPSEQERQLVTEREAVVESQSYAVETDASAMVESASSSALEDAPKK- 232
+EE S EP + E + VE ++ + S A +L P K
Sbjct: 184 GIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEPPKA 243
Query: 233 -SYASIVR-------VVKGGSGPTKVYVPTNTVKVTTK-KTENQPIKSENPPSSETSAPV 283
S+AS+ V P V P + +V K + ++QP + E
Sbjct: 244 FSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQPRVEAKPEVQSQPPRVREQRPRERPGFP 303
Query: 284 STDAPESSNAHEEVEGHSIYIRNLPDT--MTVASL-----EVEFKKFGPVKQGGIQVRHN 336
E+ + + I PD+ + V +L E E K+F +++R N
Sbjct: 304 PRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVELRIN 363
Query: 337 ------KGYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEKKKKTRVGSGR 382
K FGFV F S V + A PI G+ ++KKTR R
Sbjct: 364 TKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARER 415
>sp|Q9UN86|G3BP2_HUMAN Ras GTPase-activating protein-binding protein 2 OS=Homo sapiens
GN=G3BP2 PE=1 SV=2
Length = 482
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 111/412 (26%), Positives = 168/412 (40%), Gaps = 40/412 (9%)
Query: 9 PSAQVVGNAFVEQYYHILHSTPELVFRFY--QDSSVLSRPDSNGV-MTSVTTMEGINQKI 65
PS +VG FV QYY +L+ PE + RFY S V D++G +V I+ K+
Sbjct: 6 PSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKV 65
Query: 66 LSLDYKNYKAEIKTADAQNSHKEGVTVLVTGCLTGKDNLRRKFAQSFFLAPQ---DNGYF 122
LSL++ +I+ DA + +GV V V G L+ RKF Q+F LAP+ N ++
Sbjct: 66 LSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSVPNKFY 125
Query: 123 VLNDVFRYVDDGEVLEKYPANSIDDAPAAPSIPDIDHTHVPDPPAPD---------PVTS 173
V ND+FRY D EV +++ + P+P + PVT+
Sbjct: 126 VHNDMFRYED--EVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHPVTN 183
Query: 174 HVEEDQNISERVYEPSEQERQLVTEREAVVESQSYAVETDASAMVESASSSALEDAPKK- 232
+EE S EP + E + VE ++ + S A +L P K
Sbjct: 184 GIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEPPKA 243
Query: 233 -SYASIVR-------VVKGGSGPTKVYVPTNTVKVTTK-KTENQPIKSENPPSSETSAPV 283
S+AS+ V P V P + +V K + ++QP + E
Sbjct: 244 FSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQPRVEAKPEVQSQPPRVREQRPRERPGFP 303
Query: 284 STDAPESSNAHEEVEGHSIYIRNLPDT--MTVASL-----EVEFKKFGPVKQGGIQVRHN 336
E+ + + I PD+ + V +L E E K+F +++R N
Sbjct: 304 PRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVELRIN 363
Query: 337 ------KGYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEKKKKTRVGSGR 382
K FGFV F S V + A PI G+ ++KKTR R
Sbjct: 364 TKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARER 415
>sp|Q86HW7|NTF2_DICDI Nuclear transport factor 2 OS=Dictyostelium discoideum GN=nutf2
PE=1 SV=1
Length = 127
Score = 59.7 bits (143), Expect = 5e-08, Method: Composition-based stats.
Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 7/127 (5%)
Query: 9 PSAQVVGNAFVEQYYHILHSTPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL 68
P VG FVE YY I S + + YQ + L+ ++ + I + I+ L
Sbjct: 6 PQVVGVGKQFVEHYYGIFDSNRAGLTQIYQQQTTLTWEGK-----FLSGADAIVKHIVEL 60
Query: 69 DYKNYKAEIKTADAQNSHKEGVTVLVTGCLT--GKDNLRRKFAQSFFLAPQDNGYFVLND 126
++ +I + D Q +++ G+ + VTG L G+ + KF Q F LA + + ++ND
Sbjct: 61 PFQQTNRKINSIDCQQTYQPGIMITVTGTLIIDGEAKNQLKFVQVFNLASNNGSFLLIND 120
Query: 127 VFRYVDD 133
FR V D
Sbjct: 121 FFRLVLD 127
>sp|Q96VN3|NTF2_EMENI Nuclear transport factor 2 OS=Emericella nidulans (strain FGSC A4 /
ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=ntf2 PE=3
SV=1
Length = 125
Score = 57.8 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 8/123 (6%)
Query: 12 QVVGNAFVEQYYHILHSTPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLDYK 71
Q + FV YY + Y+D S+L+ S ++ + GI +K+ SL ++
Sbjct: 5 QSIAQQFVTFYYQTFDGNRAGLAPLYRDHSMLTFETS-----AIQGVAGIIEKLTSLPFQ 59
Query: 72 NYKAEIKTADAQNSHKEG-VTVLVTGCL-TGKDNLRRKFAQSFFLAPQDNG-YFVLNDVF 128
+ ++ T DAQ S + G + VLVTG L ++ + Q+F L P G YFVLNDVF
Sbjct: 60 KVQHQVSTLDAQPSGEHGGILVLVTGALLVDEEKNPMNYTQTFQLMPDGAGSYFVLNDVF 119
Query: 129 RYV 131
R +
Sbjct: 120 RLI 122
>sp|Q9XJ54|NTF2_ORYSJ Nuclear transport factor 2 OS=Oryza sativa subsp. japonica GN=NTF2
PE=2 SV=1
Length = 122
Score = 56.6 bits (135), Expect = 4e-07, Method: Composition-based stats.
Identities = 41/121 (33%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 11 AQVVGNAFVEQYYHILHSTPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLDY 70
A V AFVE YY + + YQD S+L+ + + I K+ SL +
Sbjct: 3 ADAVAKAFVEHYYRTFDTNRPALVSLYQDGSMLTFEGQQFLGAA-----AIAGKLGSLPF 57
Query: 71 KNYKAEIKTADAQNSHKEG-VTVLVTGCL-TGKDNLRRKFAQSFFLAPQDNGYFVLNDVF 128
+I T D Q S +G + V V+G L TG D KF+Q F L P ++V ND+F
Sbjct: 58 AQCHHDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPAGGNFYVQNDMF 117
Query: 129 R 129
R
Sbjct: 118 R 118
>sp|Q75AA5|NTF2_ASHGO Nuclear transport factor 2 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=NTF2 PE=3 SV=1
Length = 125
Score = 56.6 bits (135), Expect = 4e-07, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 7/118 (5%)
Query: 14 VGNAFVEQYYHILHSTPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLDYKNY 73
+ F E YY+ + + Y+D S+L+ S + + I +K++SL ++
Sbjct: 8 LAQQFTEFYYNQFDTDRSQLGNLYRDQSMLTFETSQ-----LQGAKDIVEKLVSLPFQKV 62
Query: 74 KAEIKTADAQNSHKEG-VTVLVTGCLTGKDNLR-RKFAQSFFLAPQDNGYFVLNDVFR 129
+ I T DAQ + G V V++TG L D ++F+Q F L P+ N Y+V ND+FR
Sbjct: 63 QHRITTLDAQPASPNGDVLVMITGDLLIDDEQNAQRFSQVFHLMPEGNSYYVFNDIFR 120
>sp|Q6FRC6|NTF2_CANGA Nuclear transport factor 2 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=NTF2 PE=3
SV=1
Length = 125
Score = 55.8 bits (133), Expect = 7e-07, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 7/118 (5%)
Query: 14 VGNAFVEQYYHILHSTPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLDYKNY 73
+ F E YY+ S + Y+D S+L+ S + + I +K++SL ++
Sbjct: 8 LAQQFTEFYYNQFDSDRSQLGNLYRDESMLTFETSQ-----LQGAKSIVEKLVSLPFQKV 62
Query: 74 KAEIKTADAQNSHKEG-VTVLVTGCLTGKDNLR-RKFAQSFFLAPQDNGYFVLNDVFR 129
I T DAQ + G V V++TG L D ++F+Q F L P N Y+V ND+FR
Sbjct: 63 AHRITTLDAQPASPNGDVLVMITGDLLIDDEQNPQRFSQVFHLIPDGNSYYVFNDIFR 120
>sp|P87102|NTF2_NEUCR Nuclear transport factor 2 OS=Neurospora crassa (strain ATCC 24698
/ 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=ntf-2 PE=2 SV=1
Length = 124
Score = 55.1 bits (131), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 7/120 (5%)
Query: 14 VGNAFVEQYYHILHSTPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLDYKNY 73
+ FV YY S + + Y+D+S+L+ + + +GI +K+ SL ++
Sbjct: 8 IATQFVAHYYSTFDSDRKNLAGLYRDNSMLTFEGAQSL-----GAQGITEKLTSLPFQKV 62
Query: 74 KAEIKTADAQNSHKEGVTVLVTGCLTGKDNLRR-KFAQSFFLAPQDNG-YFVLNDVFRYV 131
K E DAQ + G+ +LVTG L D R ++Q+F L+ +G +FV ND+F+ V
Sbjct: 63 KHEYGPPDAQPTATGGIIILVTGQLIVDDEQRPLGYSQAFQLSQDASGQWFVFNDIFKLV 122
>sp|P33331|NTF2_YEAST Nuclear transport factor 2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NTF2 PE=1 SV=2
Length = 125
Score = 52.4 bits (124), Expect = 8e-06, Method: Composition-based stats.
Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 7/114 (6%)
Query: 18 FVEQYYHILHSTPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLDYKNYKAEI 77
F + YY+ + + Y++ S+L+ S + + I +K++SL ++ + I
Sbjct: 12 FTQFYYNQFDTDRSQLGNLYRNESMLTFETSQ-----LQGAKDIVEKLVSLPFQKVQHRI 66
Query: 78 KTADAQNSHKEG-VTVLVTG-CLTGKDNLRRKFAQSFFLAPQDNGYFVLNDVFR 129
T DAQ + G V V++TG L ++ ++F+Q F L P N Y+V ND+FR
Sbjct: 67 TTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLIPDGNSYYVFNDIFR 120
>sp|Q6CC82|NTF2_YARLI Nuclear transport factor 2 OS=Yarrowia lipolytica (strain CLIB 122
/ E 150) GN=NTF2 PE=3 SV=1
Length = 123
Score = 52.0 bits (123), Expect = 9e-06, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 11/116 (9%)
Query: 18 FVEQYYHILHSTPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLDYKNYKAEI 77
F E YY + + Y+D S+L+ T + I +K++ L + + +I
Sbjct: 12 FCEFYYQTFDTDRSQLGNLYRDHSMLTFTG-----TQHQGAQAIVEKLVGLPFGQVRHKI 66
Query: 78 KTADAQNSHKEG--VTVLVTG--CLTGKDNLRRKFAQSFFLAPQDNGYFVLNDVFR 129
DAQ + +G V VLVTG C+ G + L +AQ F L P + Y+V ND+FR
Sbjct: 67 SDIDAQPASAQGGDVIVLVTGELCVDGDNPL--PYAQVFHLIPDGSSYYVFNDIFR 120
>sp|Q8NJ52|NTF2_DAVTA Nuclear transport factor 2 OS=Davidiella tassiana GN=NTF2 PE=1 SV=1
Length = 125
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 7/120 (5%)
Query: 14 VGNAFVEQYYHILHSTPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLDYKNY 73
+ F E YY + + Y+++S+L+ S + T+ I K+ L ++
Sbjct: 7 IAQQFTEFYYKTFDTDRAQLAPLYRENSMLTFEQSPFLGTA-----NIVGKLQELPFQRI 61
Query: 74 KAEIKTADAQNSHKEG-VTVLVTGCLTGKDNLR-RKFAQSFFLAPQDNGYFVLNDVFRYV 131
+ ++ T DAQ S++ G + V+V+G L ++ R + Q+F L P D Y+V NDVFR V
Sbjct: 62 EHQVATVDAQPSNESGGILVVVSGALLVEEERRPMSYTQTFQLLPADGAYYVFNDVFRLV 121
>sp|Q9C7F5|NTF2_ARATH Nuclear transport factor 2 OS=Arabidopsis thaliana GN=NTF2 PE=2
SV=1
Length = 126
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 10/120 (8%)
Query: 14 VGNAFVEQYYHILHSTPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLDYKNY 73
V AFVE YY + + YQ++S+L+ + ++ I K+ SL ++
Sbjct: 9 VSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQK-----IQGVQSIVAKLTSLPFQQC 63
Query: 74 KAEIKTADAQNSH-KEGVTVLVTGC--LTGKDNLRRKFAQSFFLAPQDNG-YFVLNDVFR 129
K I T D Q S G+ V V+G L G+++ KF+Q F L P G ++V ND+FR
Sbjct: 64 KHHISTVDCQPSGPASGMLVFVSGNLQLAGEEH-ALKFSQMFHLMPTPQGSFYVFNDIFR 122
>sp|Q9P926|NTF2_CANAX Nuclear transport factor 2 OS=Candida albicans GN=NTF2 PE=3 SV=1
Length = 124
Score = 49.3 bits (116), Expect = 7e-05, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 14 VGNAFVEQYYHILHSTPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLDYKNY 73
V F YY+ S + Y++ S+L+ S + I +K+ SL ++
Sbjct: 8 VATEFCNFYYNQFDSDRSQLGNLYRNESMLTFETSQ-----LQGARDIVEKLASLPFQKV 62
Query: 74 KAEIKTADAQNSHKEG-VTVLVTG-CLTGKDNLRRKFAQSFFLAPQDNGYFVLNDVFR 129
I T DAQ + G + V+VTG L ++ ++++Q F L P + Y+V ND+FR
Sbjct: 63 AHRISTLDAQPASANGDILVMVTGELLIDEEQNAQRYSQVFHLIPDNGSYYVFNDIFR 120
>sp|Q10100|NTF2_SCHPO Nuclear transport factor 2 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=ntf2 PE=3 SV=2
Length = 123
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 7/118 (5%)
Query: 14 VGNAFVEQYYHILHSTPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLDYKNY 73
+ F + YY S + Y++ S+LS + + + I +K++SL ++
Sbjct: 7 LATQFTQFYYQTFDSDRSQLSSLYREESMLSFEGAQ-----LQGTKAIVEKLVSLPFQRV 61
Query: 74 KAEIKTADAQNSHKEG-VTVLVTG-CLTGKDNLRRKFAQSFFLAPQDNGYFVLNDVFR 129
+ I T DAQ + G V V+VTG L ++ + ++++Q F L + Y+VLND+FR
Sbjct: 62 QHRISTLDAQPTGTTGSVIVMVTGELLLDEEQMAQRYSQVFHLVNNNGNYYVLNDLFR 119
>sp|Q6CQX4|NTF2_KLULA Nuclear transport factor 2 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=NTF2 PE=3 SV=1
Length = 125
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 7/118 (5%)
Query: 14 VGNAFVEQYYHILHSTPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLDYKNY 73
+ F E YY+ S + Y++ S+L+ T + + I +K++SL ++
Sbjct: 8 LAQQFTEFYYNQFDSDRTQLGNLYREQSMLTFE-----TTQLQGAKDIVEKLVSLPFQKV 62
Query: 74 KAEIKTADAQNSHKEG-VTVLVTG-CLTGKDNLRRKFAQSFFLAPQDNGYFVLNDVFR 129
I T DAQ + G V V++TG L ++ ++F+Q F L P+ + Y+V ND+FR
Sbjct: 63 AHRITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLMPEGSSYYVYNDIFR 120
>sp|Q6BWC0|NTF2_DEBHA Nuclear transport factor 2 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=NTF2 PE=3 SV=1
Length = 124
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 14 VGNAFVEQYYHILHSTPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLDYKNY 73
V + F YY S + Y++ S+L+ S + + I +K++SL ++
Sbjct: 8 VASEFCNFYYQQFDSDRTQLGNLYREQSMLTFETS-----QLQGAKDIVEKLVSLPFQKV 62
Query: 74 KAEIKTADAQNSHKEG-VTVLVTGCLTGKDNLR-RKFAQSFFLAPQDNGYFVLNDVFR 129
I T DAQ G + V+VTG L D ++++Q F L P N Y+V ND+FR
Sbjct: 63 AHRISTLDAQPGSPNGDILVMVTGELIIDDEQNAQRYSQVFHLIPDGNSYYVFNDIFR 120
>sp|P53741|BRE5_YEAST UBP3-associated protein BRE5 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BRE5 PE=1 SV=1
Length = 515
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 18/142 (12%)
Query: 10 SAQVVGNAFVEQYYHILHSTPELVFRFYQDSSVLSRPDSNGVMTS----------VTTME 59
+ Q + AF++ YY + + P + FY ++ L+ + T+ VT E
Sbjct: 4 TVQDICFAFLQNYYERMRTDPSKLAYFYASTAELTHTNYQSKSTNEKDDVLPTVKVTGRE 63
Query: 60 GINQKILSLDYK--NYKAEIKTADAQNS---HKEGVTVLVTGCLTGKDNLRRKFAQSFFL 114
IN+ D K + K ++ T D Q + HK + ++ TG + KF Q+F L
Sbjct: 64 NINKFFSRNDAKVRSLKLKLDTIDFQYTGHLHK-SILIMATGEMFWTGTPVYKFCQTFIL 122
Query: 115 APQDNG--YFVLNDVFRYVDDG 134
P NG + + ND+ R++ +
Sbjct: 123 LPSSNGSTFDITNDIIRFISNS 144
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 8/84 (9%)
Query: 301 SIYIRNLPDTMTVASLEVEFKKFGPV---KQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQ 357
+++++NLP+++T A L+ FKKFG + K ++ ++GY GFV+F+ + AIQ
Sbjct: 113 NVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGY--GFVQFEQEDAAHAAIQ 170
Query: 358 ASPITI-GGQEAFVEK--KKKTRV 378
TI +E +V K KK RV
Sbjct: 171 TLNSTIVADKEIYVGKFMKKTDRV 194
>sp|Q96J87|CELF6_HUMAN CUGBP Elav-like family member 6 OS=Homo sapiens GN=CELF6 PE=1 SV=1
Length = 481
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 283 VSTDAPESSNA-----HEEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRH-- 335
VST P+ +A E EG +++I +LP A L F FG V + V
Sbjct: 374 VSTAFPQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRAT 433
Query: 336 NKGYCFGFVEFQSSSSVDNAIQA 358
N+ CFGFV F + +S AIQA
Sbjct: 434 NQSKCFGFVSFDNPTSAQTAIQA 456
>sp|Q7KNF2|PABP2_DROME Polyadenylate-binding protein 2 OS=Drosophila melanogaster GN=Pabp2
PE=2 SV=1
Length = 224
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 8/117 (6%)
Query: 288 PESSNAHEEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGY--CFGFVE 345
P S +E++ S+Y+ N+ + LE F G + + I G+ F ++E
Sbjct: 84 PLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIE 143
Query: 346 FQSSSSVDNAIQASPITIGGQEAFVEKKKKTRVGSGRGRFPSERERFRNDSFRGRGS 402
F S V+ A+ + G++ V K+ R G S RF SFRGRG+
Sbjct: 144 FGSKEFVETALAMNETLFRGRQIKVMSKRTNRPG------LSTTNRFARGSFRGRGA 194
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 301 SIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKG--YCFGFVEFQSSSSVDNAIQ- 357
++Y++NLP + L F KFG V + +R G CFGFV F+ + + +A++
Sbjct: 230 NVYVKNLPKEIGEDELRKTFGKFG-VISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEK 288
Query: 358 ASPITIGGQEAFV--EKKKKTRVGSGRGRFPSER 389
+ I++G +V +KK R R +F ER
Sbjct: 289 MNGISLGDDVLYVGRAQKKSEREEELRRKFEQER 322
>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1
PE=3 SV=2
Length = 631
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 301 SIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQV-RHNKGYCFGFVEFQSSSSVDNAI-QA 358
++Y++NL + A E FK FGPV ++ + K FGFV F++ S NA+ +
Sbjct: 240 NVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEM 299
Query: 359 SPITIGGQEAFVEKKKKTR 377
+ I GQ+ +V + +K R
Sbjct: 300 NDKEIDGQKLYVGRAQKKR 318
Score = 38.1 bits (87), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRH-NKGYCFGFVEFQSSSSVDNAI 356
+G +++++NL D++ LE EFK FG + + V K FGFV F S AI
Sbjct: 340 QGVNLFVKNLDDSIDSEKLEEEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAI 399
>sp|Q9IBD1|CELF3_DANRE CUGBP Elav-like family member 3 OS=Danio rerio GN=celf3 PE=2 SV=2
Length = 452
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRH--NKGYCFGFVEFQSSSSVDNA 355
EG +I+I +LP T + + F FG V + V N+ CFGFV F + +S A
Sbjct: 365 EGCNIFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQAA 424
Query: 356 IQA 358
IQA
Sbjct: 425 IQA 427
>sp|Q21735|NTF2_CAEEL Probable nuclear transport factor 2 OS=Caenorhabditis elegans
GN=ran-4 PE=3 SV=1
Length = 133
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 59 EGINQKILSLDYKNYKAEIKTADAQNSHKEGVTVLVTGCLTGKDNLRRKFAQSFFLAPQD 118
+GI QK +L + + I D+Q + + V+V G L ++ F+Q F L P +
Sbjct: 56 DGILQKFTTLGFTKIQRAITVIDSQPLYDGSIQVMVLGQLKTDEDPINPFSQVFILRPNN 115
Query: 119 NG-YFVLNDVFR 129
G YF+ N++FR
Sbjct: 116 QGSYFIGNEIFR 127
>sp|P97855|G3BP1_MOUSE Ras GTPase-activating protein-binding protein 1 OS=Mus musculus
GN=G3bp1 PE=1 SV=1
Length = 465
Score = 41.2 bits (95), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKG---YCFGFVEFQSSSSVDN 354
+ H ++I NLP + + L+ F+ FG V +++R N G FGFV F S V
Sbjct: 336 DSHQLFIGNLPHEVDKSELKDFFQNFGNV----VELRINSGGKLPNFGFVVFDDSEPVQK 391
Query: 355 AIQASPITIGGQEAFVEKKKKTR 377
+ PI G ++KKTR
Sbjct: 392 VLSNRPIMFRGAVRLNVEEKKTR 414
>sp|Q7TN33|CELF6_MOUSE CUGBP Elav-like family member 6 OS=Mus musculus GN=Celf6 PE=2 SV=1
Length = 460
Score = 41.2 bits (95), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 295 EEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRH--NKGYCFGFVEFQSSSSV 352
E EG +++I +LP A L F FG V + V N+ CFGFV F + +S
Sbjct: 370 EGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSA 429
Query: 353 DNAIQA 358
AIQA
Sbjct: 430 QTAIQA 435
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 40.8 bits (94), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHN-KGYCFGFVEFQSSSSVDNAI 356
+G +++I+NL DT+ LE EFK FG + + V K FGFV F S AI
Sbjct: 333 QGVNLFIKNLDDTIDSEKLEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATKAI 392
>sp|Q91579|CEL3A_XENLA CUGBP Elav-like family member 3-A OS=Xenopus laevis GN=tnrc4-a PE=2
SV=2
Length = 462
Score = 40.4 bits (93), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRH--NKGYCFGFVEFQSSSSVDNA 355
EG +I+I +LP T + + F FG V + V N+ CFGFV F + S A
Sbjct: 375 EGCNIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAA 434
Query: 356 IQA 358
IQA
Sbjct: 435 IQA 437
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 40.4 bits (93), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHN-KGYCFGFVEFQSSSSVDNAI 356
+G +++I+NL DT+ LE EFK FG + + V K FGFV F S AI
Sbjct: 334 QGVNLFIKNLDDTIDSEKLEEEFKPFGTITSARVMVDETGKSKGFGFVCFSSPEEATKAI 393
>sp|Q5RB87|G3BP1_PONAB Ras GTPase-activating protein-binding protein 1 OS=Pongo abelii
GN=G3BP1 PE=2 SV=1
Length = 466
Score = 40.4 bits (93), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKG---YCFGFVEFQSSSSVDN 354
+ H ++I NLP + + L+ F+ +G V +++R N G FGFV F S V
Sbjct: 338 DSHQLFIGNLPHEVDKSELKDFFQSYGNV----VELRINSGGKLPNFGFVVFDDSEPVQK 393
Query: 355 AIQASPITIGGQEAFVEKKKKTR 377
+ PI G+ ++KKTR
Sbjct: 394 VLSNRPIMFRGEVRLNVEEKKTR 416
>sp|Q13283|G3BP1_HUMAN Ras GTPase-activating protein-binding protein 1 OS=Homo sapiens
GN=G3BP1 PE=1 SV=1
Length = 466
Score = 40.4 bits (93), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKG---YCFGFVEFQSSSSVDN 354
+ H ++I NLP + + L+ F+ +G V +++R N G FGFV F S V
Sbjct: 338 DSHQLFIGNLPHEVDKSELKDFFQSYGNV----VELRINSGGKLPNFGFVVFDDSEPVQK 393
Query: 355 AIQASPITIGGQEAFVEKKKKTR 377
+ PI G+ ++KKTR
Sbjct: 394 VLSNRPIMFRGEVRLNVEEKKTR 416
>sp|Q5SZQ8|CELF3_HUMAN CUGBP Elav-like family member 3 OS=Homo sapiens GN=CELF3 PE=1 SV=1
Length = 465
Score = 40.0 bits (92), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRH--NKGYCFGFVEFQSSSSVDNA 355
+G +I+I +LP T + + F FG V + V N+ CFGFV F + +S A
Sbjct: 378 DGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAA 437
Query: 356 IQA 358
IQA
Sbjct: 438 IQA 440
>sp|Q8CIN6|CELF3_MOUSE CUGBP Elav-like family member 3 OS=Mus musculus GN=Celf3 PE=2 SV=1
Length = 465
Score = 40.0 bits (92), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRH--NKGYCFGFVEFQSSSSVDNA 355
+G +I+I +LP T + + F FG V + V N+ CFGFV F + +S A
Sbjct: 378 DGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAA 437
Query: 356 IQA 358
IQA
Sbjct: 438 IQA 440
>sp|P20397|NUCL_XENLA Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3
Length = 651
Score = 39.7 bits (91), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQ-VRHNKGYCFGFVEFQSSSSVDNAI 356
EG SI+I NL T L+ ++F K IQ +R FG+V+F S V+ A+
Sbjct: 231 EGLSIFIGNLNSTKEFDELKDALREFFSKKNLTIQDIRIGNSKKFGYVDFSSEEEVEKAL 290
Query: 357 QASPITIGGQEAFVEK 372
+ + I G E +EK
Sbjct: 291 KLTGKKILGTEVKIEK 306
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 39.3 bits (90), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 70/164 (42%), Gaps = 19/164 (11%)
Query: 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRH-NKGYCFGFVEFQSSSSVDNAI 356
+G +++++NL DT+ LE EFK FG + + V K FGFV F + AI
Sbjct: 334 QGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAI 393
Query: 357 -QASPITIGGQEAFVEKKKKTRVGSGRGRFPSERERFRNDSFRGRGSYGG--GRSFGRNE 413
+ + I G+ +V ++ V R ++ + RN + GG G+
Sbjct: 394 TEMNTRMINGKPLYVALAQRKDV---RRSQLEQQIQARNQMRMQNAAAGGLPGQFIPPMF 450
Query: 414 YGNRVEFQVRGRGSM------------GRGEGYPRGRGRGGRSG 445
YG + F GRG+ GRG+ +P R G +G
Sbjct: 451 YGQQGFFPPNGRGNAPYPGPNPQMMMRGRGQPFPEQWPRPGPNG 494
>sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis
elegans GN=rsp-3 PE=1 SV=2
Length = 258
Score = 39.3 bits (90), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQ 357
E +Y+ NLP + +E F K+G +K + ++ +G F FVEF+ ++A++
Sbjct: 7 EDQKVYVGNLPGDVREKEVEDIFHKYGRIKY--VDIKSGRGPAFAFVEFEDHRDAEDAVR 64
Query: 358 A 358
A
Sbjct: 65 A 65
>sp|Q7ZWM3|CEL3B_XENLA CUGBP Elav-like family member 3-B OS=Xenopus laevis GN=tnrc4-b PE=2
SV=1
Length = 462
Score = 39.3 bits (90), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRH--NKGYCFGFVEFQSSSSVDNA 355
EG +I+I +LP T + + F FG V + V N+ CFGFV F + S A
Sbjct: 375 EGCNIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAA 434
Query: 356 IQA 358
IQ+
Sbjct: 435 IQS 437
>sp|P13383|NUCL_RAT Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3
Length = 713
Score = 38.9 bits (89), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 9/96 (9%)
Query: 286 DAPESSNAHEEVEGH------SIYIRNLPDTMTVASLEVEFKK-FGPVKQGGIQVRHNKG 338
+APE+ +++EG +++I NL +VA L+V + F + VR
Sbjct: 293 EAPEAK--KQKIEGSEPTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAAVDVRTGTN 350
Query: 339 YCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEKKK 374
FG+V+F+S+ ++ A++ + + + G E +EK K
Sbjct: 351 RKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 386
>sp|P40561|SGN1_YEAST RNA-binding protein SGN1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SGN1 PE=1 SV=1
Length = 250
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 56/108 (51%), Gaps = 4/108 (3%)
Query: 289 ESSNAHE-EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKG--YCFGFVE 345
E +AH+ E + SI++ N+ +T +E FK G +K+ + N G +G++E
Sbjct: 52 EEKHAHQLEADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIE 111
Query: 346 FQSSSSVDNAIQASPITIGGQEAFVEKKKKTRVGSGRGRFPSERERFR 393
F+S + + A+Q + + G++ V +K+ G R + S+ + F+
Sbjct: 112 FESPAYREKALQLNGGELKGKKIAVSRKRTNIPGFNR-HYNSQNQYFQ 158
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 299 GHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQV--RHNKGYCFGFVEFQSSSSVDNAI 356
G+ +++ LP +T L F ++G V + I K FGF+ F+ SSV++
Sbjct: 95 GYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVT 154
Query: 357 QASPITIGGQEAFVEKKKKTRVGSG 381
I + G++ + KK + R GSG
Sbjct: 155 NERYINLNGKQVEI-KKAEPRDGSG 178
>sp|Q9USY2|YOW4_SCHPO Uncharacterized RNA-binding protein C1861.04c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC1861.04c PE=4 SV=1
Length = 1014
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQ 357
EG +Y+ N+ + +E F+ +G V+ I R N+ FG+V ++ +NA+
Sbjct: 755 EGRELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQDAENALS 814
Query: 358 ASPITIGGQEAFV------EKKKKTRVGSGRGR 384
A+ +G + V E +KTRV S R
Sbjct: 815 AAGKQLGNRVLNVVLSKPRESLEKTRVSSNDNR 847
>sp|P15771|NUCL_CHICK Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1
Length = 694
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 287 APESSNAHEEV--EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGI-QVRHNKGYCFGF 343
APE+ E S++++NL T L K+F K + +VR FG+
Sbjct: 266 APEAKKKKTETPASAFSLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRIGSSKRFGY 325
Query: 344 VEFQSSSSVDNAIQASPITIGGQEAFVEKKK 374
V+F S+ +D A+Q + + G E +EK K
Sbjct: 326 VDFLSAEDMDKALQLNGKKLMGLEIKLEKAK 356
>sp|Q6TY21|EPA2B_XENLA Embryonic polyadenylate-binding protein 2-B OS=Xenopus laevis
GN=Pabpn1l-b PE=1 SV=1
Length = 218
Score = 37.4 bits (85), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 55/139 (39%), Gaps = 18/139 (12%)
Query: 241 VKGGSGPTK-VYVPTNTVKVTTKKTENQPIKSENPPSSETSAPVSTDAPESSNAHEEVEG 299
+KG SG K + V T TT +E PP P S+ +E++
Sbjct: 44 LKGLSGQDKSIGVSTRPCMQTTHSKMTAGAYTEGPPQ-----------PLSAEEKKEIDK 92
Query: 300 HSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVR----HNKGYCFGFVEFQSSSSVDNA 355
S+Y+ N+ T LE F G + + I H KGY ++EF +SVD A
Sbjct: 93 RSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGY--AYIEFAERNSVDAA 150
Query: 356 IQASPITIGGQEAFVEKKK 374
+ G+ V K+
Sbjct: 151 VAMDETVFRGRTIKVLPKR 169
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 37.4 bits (85), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 302 IYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRH--NKGYCFGFVEFQSSSSVDNAIQAS 359
I++ LP T+T F+ +GPV I N+ FGFV F S +VD+ + +
Sbjct: 112 IFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKT 171
Query: 360 PITIGGQEAFVEK 372
+ G++ V++
Sbjct: 172 FHDLSGKQVEVKR 184
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 37.0 bits (84), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 13/115 (11%)
Query: 301 SIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQASP 360
+I++ L +T L F +FG V + V+ G GFV+F SS AIQ
Sbjct: 296 TIFVGGLDSEVTDEELRQSFNQFGEV----VSVKIPAGKGCGFVQFSDRSSAQEAIQKLS 351
Query: 361 ITIGGQEAFVEKKKKTRVGSGRGRFPSERERFRNDSFRGRGSYGGGRSFGRNEYG 415
I G++A V GR P+ ++ + + G Y G +++G YG
Sbjct: 352 GAIIGKQA---------VRLSWGRSPANKQMRTDSGSQWNGGYNGRQNYGGYGYG 397
>sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810,
chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1
Length = 952
Score = 37.0 bits (84), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 72/177 (40%), Gaps = 41/177 (23%)
Query: 302 IYIRNLPDTMTVASLEVEFKKFGPVK-----QGGIQVRHNKGYCFGFVEFQSSSSVDNAI 356
I++ NLP + E F++FGP++ +G +V N G FGF+ + + S A+
Sbjct: 167 IFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAG--FGFIIYAAEKSAMKAV 224
Query: 357 QASPITIGGQEAFVE----KKKKTRVGSGRGRFPSERE---RFRNDSFRGRGSYGGGRSF 409
+ + G+ V+ K+ KT+ R R+ E E + N S + G +S
Sbjct: 225 EFDGVEFHGRILTVKLDDGKRLKTK-AEQRVRWVEEGEEDTKMSNKSSWHQEREGSRKSL 283
Query: 410 ------------------------GRNEYGNRVEFQVRGRGSMGRG-EGYPRGRGRG 441
R E+G V+F R RG M R E + R R RG
Sbjct: 284 QRILDTNGDNWQAVISAFEKISKPSRTEFGLMVKFYGR-RGDMHRARETFERMRARG 339
>sp|P08199|NUCL_MESAU Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2
Length = 714
Score = 36.2 bits (82), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Query: 286 DAPESSNAHEEVEGH------SIYIRNLPDTMTVASLEVEFKK-FGPVKQGGIQVRHNKG 338
+ PE+ ++VEG +++I NL +VA L+V + F + VR
Sbjct: 290 EVPEAK--KQKVEGSESTTPFNLFIGNLNPNKSVAELKVAISEPFAKNDLAVVDVRTGTN 347
Query: 339 YCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEKKK 374
FG+V+F+S+ ++ A++ + + + G E +EK K
Sbjct: 348 RKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 383
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.129 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 181,770,269
Number of Sequences: 539616
Number of extensions: 8385827
Number of successful extensions: 31440
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 605
Number of HSP's that attempted gapping in prelim test: 28516
Number of HSP's gapped (non-prelim): 2626
length of query: 460
length of database: 191,569,459
effective HSP length: 121
effective length of query: 339
effective length of database: 126,275,923
effective search space: 42807537897
effective search space used: 42807537897
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)