Query 012564
Match_columns 460
No_of_seqs 479 out of 2979
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 03:58:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012564.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012564hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0116 RasGAP SH3 binding pro 100.0 2.5E-64 5.4E-69 507.4 35.4 353 6-379 8-370 (419)
2 KOG2104 Nuclear transport fact 100.0 4E-34 8.7E-39 232.2 11.4 117 10-131 5-122 (126)
3 cd00780 NTF2 Nuclear transport 100.0 2.3E-32 4.9E-37 234.7 15.1 118 10-132 1-119 (119)
4 PF02136 NTF2: Nuclear transpo 99.9 4.6E-26 9.9E-31 194.9 12.3 113 14-130 1-118 (118)
5 KOG4353 RNA export factor NXT1 99.9 3.3E-24 7.2E-29 176.9 6.6 114 13-133 14-137 (139)
6 PLN03134 glycine-rich RNA-bind 99.7 8.2E-17 1.8E-21 142.4 14.7 80 297-376 32-114 (144)
7 KOG0105 Alternative splicing f 99.6 1.1E-15 2.4E-20 134.9 10.0 75 298-374 5-81 (241)
8 TIGR01659 sex-lethal sex-letha 99.6 2.2E-14 4.7E-19 144.4 16.6 78 299-376 193-275 (346)
9 KOG0107 Alternative splicing f 99.6 2.7E-14 5.9E-19 125.4 15.0 79 298-379 9-88 (195)
10 TIGR01648 hnRNP-R-Q heterogene 99.5 2.7E-13 5.8E-18 143.7 17.0 72 299-376 233-307 (578)
11 KOG0121 Nuclear cap-binding pr 99.5 7E-14 1.5E-18 116.7 8.4 79 296-374 33-114 (153)
12 TIGR01659 sex-lethal sex-letha 99.5 1E-12 2.2E-17 132.5 18.0 82 294-375 102-186 (346)
13 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 1.4E-12 3E-17 132.4 13.8 81 296-376 266-349 (352)
14 KOG0113 U1 small nuclear ribon 99.4 4.6E-12 1E-16 119.9 15.5 81 296-376 98-181 (335)
15 PF00076 RRM_1: RNA recognitio 99.4 9.1E-13 2E-17 101.0 8.0 68 302-369 1-70 (70)
16 PLN03213 repressor of silencin 99.4 1.3E-12 2.7E-17 130.7 9.5 79 296-376 7-88 (759)
17 KOG0125 Ataxin 2-binding prote 99.4 3.3E-12 7.1E-17 122.3 11.5 79 298-376 95-174 (376)
18 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 2.8E-12 6.1E-17 130.1 10.6 78 299-376 3-83 (352)
19 PLN03120 nucleic acid binding 99.4 3.8E-12 8.2E-17 120.9 10.6 77 299-376 4-80 (260)
20 KOG0149 Predicted RNA-binding 99.4 1.5E-12 3.1E-17 119.9 7.4 79 296-374 9-89 (247)
21 KOG0122 Translation initiation 99.3 2.8E-11 6.1E-16 111.8 13.1 82 295-376 185-269 (270)
22 KOG4207 Predicted splicing fac 99.3 1.9E-11 4.2E-16 110.1 10.1 78 298-375 12-92 (256)
23 PLN03121 nucleic acid binding 99.3 2.5E-11 5.5E-16 113.5 10.3 77 297-374 3-79 (243)
24 PF14259 RRM_6: RNA recognitio 99.3 1.7E-11 3.7E-16 94.4 7.6 68 302-369 1-70 (70)
25 TIGR01645 half-pint poly-U bin 99.2 5.1E-11 1.1E-15 126.7 10.7 79 298-376 203-284 (612)
26 KOG0130 RNA-binding protein RB 99.2 3.6E-11 7.8E-16 101.4 6.4 81 295-375 68-151 (170)
27 KOG0117 Heterogeneous nuclear 99.2 3.6E-10 7.8E-15 112.4 14.3 73 298-376 258-331 (506)
28 TIGR01645 half-pint poly-U bin 99.2 5.4E-11 1.2E-15 126.6 9.1 76 298-373 106-184 (612)
29 smart00362 RRM_2 RNA recogniti 99.2 1.5E-10 3.2E-15 88.0 8.7 71 301-371 1-72 (72)
30 KOG0148 Apoptosis-promoting RN 99.1 2.9E-10 6.2E-15 106.5 11.0 78 295-376 160-238 (321)
31 KOG0114 Predicted RNA-binding 99.1 4.2E-10 9.1E-15 90.8 9.1 79 297-376 16-95 (124)
32 TIGR01628 PABP-1234 polyadenyl 99.1 2.5E-10 5.5E-15 123.2 10.6 81 296-376 282-364 (562)
33 TIGR01642 U2AF_lg U2 snRNP aux 99.1 4.6E-10 9.9E-15 119.7 11.7 79 298-376 294-375 (509)
34 KOG4212 RNA-binding protein hn 99.1 7.8E-10 1.7E-14 109.5 11.7 78 298-375 43-123 (608)
35 TIGR01628 PABP-1234 polyadenyl 99.1 3.9E-10 8.4E-15 121.8 10.2 75 300-374 1-78 (562)
36 TIGR01622 SF-CC1 splicing fact 99.1 5E-10 1.1E-14 117.8 10.7 77 299-375 186-265 (457)
37 TIGR01622 SF-CC1 splicing fact 99.1 5.2E-10 1.1E-14 117.6 10.8 79 296-374 86-166 (457)
38 TIGR01648 hnRNP-R-Q heterogene 99.1 6.3E-10 1.4E-14 118.3 10.8 74 298-371 57-133 (578)
39 KOG0111 Cyclophilin-type pepti 99.0 1.6E-10 3.4E-15 105.1 4.2 80 297-376 8-90 (298)
40 cd00590 RRM RRM (RNA recogniti 99.0 2E-09 4.3E-14 82.1 9.4 71 301-371 1-73 (74)
41 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.0 1.1E-09 2.5E-14 115.8 10.6 78 296-376 272-351 (481)
42 smart00360 RRM RNA recognition 99.0 1.3E-09 2.9E-14 82.3 8.2 68 304-371 1-71 (71)
43 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.0 9.1E-10 2E-14 116.5 9.8 73 299-375 2-77 (481)
44 COG0724 RNA-binding proteins ( 99.0 1.2E-09 2.6E-14 104.9 9.8 76 299-374 115-193 (306)
45 KOG0126 Predicted RNA-binding 99.0 5.5E-11 1.2E-15 105.2 -0.0 79 295-373 31-112 (219)
46 KOG0146 RNA-binding protein ET 99.0 3.2E-10 6.9E-15 105.9 5.0 84 294-377 280-366 (371)
47 KOG0145 RNA-binding protein EL 99.0 3.2E-09 6.9E-14 98.9 10.6 81 296-376 38-121 (360)
48 KOG0131 Splicing factor 3b, su 99.0 8.6E-10 1.9E-14 97.9 5.5 78 297-374 7-87 (203)
49 KOG0144 RNA-binding protein CU 98.9 4.2E-09 9E-14 104.5 10.2 84 292-375 27-116 (510)
50 KOG0108 mRNA cleavage and poly 98.9 2.1E-09 4.5E-14 110.3 8.3 77 300-376 19-98 (435)
51 KOG0127 Nucleolar protein fibr 98.9 2.7E-09 5.8E-14 108.6 8.7 82 295-376 288-378 (678)
52 KOG0148 Apoptosis-promoting RN 98.9 4.5E-09 9.8E-14 98.6 8.6 78 299-376 62-142 (321)
53 KOG0144 RNA-binding protein CU 98.9 1.9E-09 4.2E-14 106.8 5.3 82 297-378 122-208 (510)
54 KOG0117 Heterogeneous nuclear 98.9 7.9E-09 1.7E-13 103.0 9.3 78 297-374 81-162 (506)
55 KOG0109 RNA-binding protein LA 98.9 2.5E-09 5.4E-14 101.2 5.5 71 300-376 3-74 (346)
56 KOG0415 Predicted peptidyl pro 98.8 4.3E-09 9.3E-14 101.9 6.7 79 298-376 238-319 (479)
57 KOG0124 Polypyrimidine tract-b 98.8 2.2E-09 4.8E-14 104.2 4.3 73 299-371 113-188 (544)
58 KOG0127 Nucleolar protein fibr 98.8 7.6E-09 1.6E-13 105.3 8.0 78 299-376 117-196 (678)
59 KOG4661 Hsp27-ERE-TATA-binding 98.8 3.6E-08 7.8E-13 100.6 10.8 81 296-376 402-485 (940)
60 PF13893 RRM_5: RNA recognitio 98.8 1.7E-08 3.6E-13 74.3 6.0 55 316-373 1-56 (56)
61 smart00361 RRM_1 RNA recogniti 98.7 3.4E-08 7.5E-13 76.2 7.5 58 313-370 2-69 (70)
62 KOG0153 Predicted RNA-binding 98.7 2.5E-08 5.4E-13 96.7 7.8 77 295-375 224-302 (377)
63 KOG0123 Polyadenylate-binding 98.7 3.2E-08 6.8E-13 100.6 8.9 74 302-376 79-153 (369)
64 KOG0147 Transcriptional coacti 98.7 1.6E-08 3.6E-13 103.3 5.7 77 299-375 278-357 (549)
65 TIGR01642 U2AF_lg U2 snRNP aux 98.7 4E-08 8.6E-13 104.8 8.7 75 295-373 171-257 (509)
66 KOG4205 RNA-binding protein mu 98.7 2.3E-08 4.9E-13 98.5 5.1 79 298-376 5-85 (311)
67 KOG0145 RNA-binding protein EL 98.6 1.3E-07 2.8E-12 88.4 9.4 79 297-375 276-357 (360)
68 KOG4205 RNA-binding protein mu 98.6 1.7E-07 3.8E-12 92.3 10.9 79 298-376 96-176 (311)
69 KOG0109 RNA-binding protein LA 98.6 8.7E-08 1.9E-12 91.0 7.0 74 297-376 76-150 (346)
70 KOG0131 Splicing factor 3b, su 98.5 1.6E-07 3.5E-12 83.6 6.0 77 299-375 96-176 (203)
71 cd00531 NTF2_like Nuclear tran 98.5 2.2E-06 4.8E-11 71.7 12.3 115 16-130 2-123 (124)
72 KOG4209 Splicing factor RNPS1, 98.5 6.3E-07 1.4E-11 85.2 9.5 85 295-379 97-183 (231)
73 KOG4212 RNA-binding protein hn 98.5 2.9E-07 6.2E-12 91.6 7.2 75 295-372 532-607 (608)
74 KOG0132 RNA polymerase II C-te 98.5 3.3E-07 7.2E-12 97.0 8.0 75 298-376 420-495 (894)
75 KOG0110 RNA-binding protein (R 98.4 4E-07 8.7E-12 95.8 7.6 75 300-374 516-596 (725)
76 KOG4206 Spliceosomal protein s 98.4 6E-07 1.3E-11 82.9 7.8 76 300-376 10-90 (221)
77 KOG0110 RNA-binding protein (R 98.4 2.1E-07 4.6E-12 97.8 5.1 79 297-375 611-692 (725)
78 KOG0533 RRM motif-containing p 98.4 4.4E-06 9.5E-11 79.4 12.5 81 296-376 80-162 (243)
79 KOG0124 Polypyrimidine tract-b 98.4 6.8E-07 1.5E-11 87.2 6.9 80 296-375 207-289 (544)
80 KOG0106 Alternative splicing f 98.3 9.3E-07 2E-11 82.3 5.3 71 300-376 2-73 (216)
81 KOG0146 RNA-binding protein ET 98.3 1.8E-06 3.8E-11 81.2 6.8 80 297-376 17-101 (371)
82 KOG4208 Nucleolar RNA-binding 98.3 2.4E-06 5.2E-11 77.8 7.3 81 296-376 46-130 (214)
83 PF10429 Mtr2: Nuclear pore RN 98.3 2.5E-06 5.4E-11 75.1 6.9 98 14-117 6-109 (166)
84 KOG1548 Transcription elongati 98.2 5.6E-06 1.2E-10 80.6 8.2 80 297-376 132-221 (382)
85 KOG1457 RNA binding protein (c 98.2 3E-05 6.5E-10 71.4 12.0 81 297-377 32-119 (284)
86 KOG0151 Predicted splicing reg 98.1 6.6E-06 1.4E-10 86.6 8.6 83 293-375 168-256 (877)
87 KOG4211 Splicing factor hnRNP- 98.1 3.6E-05 7.9E-10 78.3 12.8 76 299-374 103-180 (510)
88 KOG0123 Polyadenylate-binding 98.1 7.4E-06 1.6E-10 83.4 8.0 72 300-375 2-74 (369)
89 KOG4454 RNA binding protein (R 98.1 1.4E-06 3.1E-11 79.7 2.3 78 298-375 8-86 (267)
90 KOG4211 Splicing factor hnRNP- 97.9 3.3E-05 7E-10 78.7 7.8 75 298-373 9-83 (510)
91 KOG1995 Conserved Zn-finger pr 97.9 9.1E-05 2E-09 72.9 10.6 82 295-376 62-154 (351)
92 KOG0921 Dosage compensation co 97.9 3.8E-05 8.3E-10 83.3 8.2 6 433-438 1255-1260(1282)
93 KOG0226 RNA-binding proteins [ 97.8 2.9E-05 6.3E-10 72.8 5.2 79 294-372 185-266 (290)
94 KOG4660 Protein Mei2, essentia 97.8 2E-05 4.3E-10 81.4 4.3 71 296-369 72-143 (549)
95 PF08777 RRM_3: RNA binding mo 97.8 6.8E-05 1.5E-09 62.6 6.6 69 299-371 1-75 (105)
96 KOG1457 RNA binding protein (c 97.7 3.4E-05 7.3E-10 71.0 4.1 63 299-363 210-273 (284)
97 PF15008 DUF4518: Domain of un 97.5 0.001 2.2E-08 63.9 11.7 125 8-132 124-260 (262)
98 KOG4210 Nuclear localization s 97.5 0.00012 2.6E-09 72.1 4.4 77 300-376 186-264 (285)
99 PF04059 RRM_2: RNA recognitio 97.4 0.0014 3E-08 53.7 9.3 75 300-374 2-85 (97)
100 KOG4849 mRNA cleavage factor I 97.4 0.00031 6.6E-09 68.6 6.3 74 298-371 79-157 (498)
101 PF11608 Limkain-b1: Limkain b 97.2 0.0018 3.8E-08 51.0 7.2 68 300-375 3-76 (90)
102 KOG0120 Splicing factor U2AF, 97.2 0.00035 7.5E-09 72.8 4.1 80 297-376 287-369 (500)
103 KOG1855 Predicted RNA-binding 97.0 0.0054 1.2E-07 61.8 11.0 66 294-359 226-306 (484)
104 KOG0106 Alternative splicing f 97.0 0.00048 1E-08 64.3 3.0 67 298-370 98-165 (216)
105 KOG0147 Transcriptional coacti 97.0 0.00034 7.4E-09 72.3 1.8 80 294-373 174-255 (549)
106 KOG1190 Polypyrimidine tract-b 96.9 0.003 6.5E-08 63.2 8.0 74 299-375 297-372 (492)
107 PRK11634 ATP-dependent RNA hel 96.9 0.0078 1.7E-07 66.0 12.1 72 300-374 487-561 (629)
108 PF13474 SnoaL_3: SnoaL-like d 96.9 0.0085 1.9E-07 50.2 9.4 109 16-128 2-116 (121)
109 TIGR02246 conserved hypothetic 96.8 0.026 5.7E-07 47.8 11.8 109 15-128 6-123 (128)
110 KOG1456 Heterogeneous nuclear 96.6 0.098 2.1E-06 52.1 15.6 70 304-376 127-199 (494)
111 KOG2202 U2 snRNP splicing fact 96.6 0.009 1.9E-07 56.6 7.9 57 315-373 84-145 (260)
112 KOG3763 mRNA export factor TAP 96.6 0.015 3.2E-07 61.0 10.2 123 8-132 334-497 (585)
113 KOG4206 Spliceosomal protein s 96.5 0.0077 1.7E-07 56.0 7.2 74 298-374 145-220 (221)
114 PF14605 Nup35_RRM_2: Nup53/35 96.5 0.0065 1.4E-07 44.0 5.4 52 300-356 2-53 (53)
115 KOG0129 Predicted RNA-binding 96.5 0.0061 1.3E-07 62.9 6.8 62 297-359 257-326 (520)
116 KOG1190 Polypyrimidine tract-b 96.4 0.0022 4.8E-08 64.1 3.0 72 298-373 27-101 (492)
117 COG5175 MOT2 Transcriptional r 96.4 0.0079 1.7E-07 58.8 6.4 79 297-375 112-202 (480)
118 PF14534 DUF4440: Domain of un 96.2 0.069 1.5E-06 43.3 10.4 101 17-123 3-107 (107)
119 KOG0129 Predicted RNA-binding 96.1 0.015 3.2E-07 60.2 7.2 63 297-359 368-433 (520)
120 KOG0120 Splicing factor U2AF, 96.1 0.013 2.7E-07 61.4 6.6 61 314-374 424-490 (500)
121 KOG4307 RNA binding protein RB 95.8 0.027 5.9E-07 60.0 7.8 73 300-372 868-943 (944)
122 KOG2314 Translation initiation 95.7 0.045 9.6E-07 57.2 8.5 75 297-371 56-139 (698)
123 KOG0112 Large RNA-binding prot 95.6 0.014 3E-07 63.9 4.8 77 296-376 452-531 (975)
124 PF05172 Nup35_RRM: Nup53/35/4 95.5 0.039 8.5E-07 45.5 6.0 74 299-373 6-89 (100)
125 PF08952 DUF1866: Domain of un 95.2 0.068 1.5E-06 46.9 6.9 56 315-376 52-107 (146)
126 KOG3152 TBP-binding protein, a 95.1 0.011 2.5E-07 55.8 2.0 69 299-367 74-157 (278)
127 KOG0105 Alternative splicing f 95.1 0.21 4.6E-06 45.2 9.7 69 298-371 114-185 (241)
128 PF12893 Lumazine_bd_2: Putati 95.0 0.5 1.1E-05 39.7 11.6 104 16-129 7-116 (116)
129 KOG1365 RNA-binding protein Fu 94.7 0.024 5.2E-07 56.4 3.0 71 300-370 162-237 (508)
130 PF12680 SnoaL_2: SnoaL-like d 94.6 0.13 2.9E-06 40.9 6.9 72 19-98 1-75 (102)
131 KOG0115 RNA-binding protein p5 94.5 0.038 8.2E-07 52.4 3.7 76 300-375 32-113 (275)
132 KOG0128 RNA-binding protein SA 93.9 0.045 9.8E-07 59.8 3.4 77 299-375 736-814 (881)
133 PF10309 DUF2414: Protein of u 93.9 0.35 7.6E-06 36.1 7.0 54 299-359 5-62 (62)
134 KOG1548 Transcription elongati 93.5 0.24 5.2E-06 49.0 7.2 77 296-374 262-350 (382)
135 KOG1456 Heterogeneous nuclear 93.4 1.1 2.3E-05 45.0 11.4 78 296-376 284-363 (494)
136 KOG3262 H/ACA small nucleolar 93.3 0.79 1.7E-05 41.5 9.6 12 322-333 97-108 (215)
137 KOG1365 RNA-binding protein Fu 93.3 0.095 2.1E-06 52.4 4.1 76 299-374 280-360 (508)
138 KOG2416 Acinus (induces apopto 93.0 0.11 2.3E-06 54.7 4.2 77 295-375 440-521 (718)
139 KOG0128 RNA-binding protein SA 92.9 0.016 3.4E-07 63.2 -2.1 72 297-368 665-739 (881)
140 PRK10590 ATP-dependent RNA hel 92.8 1.1 2.4E-05 47.2 11.8 17 338-354 343-359 (456)
141 KOG2193 IGF-II mRNA-binding pr 92.8 0.13 2.7E-06 52.1 4.3 71 300-376 2-76 (584)
142 KOG1996 mRNA splicing factor [ 92.6 0.34 7.3E-06 46.9 6.6 61 313-373 300-364 (378)
143 cd00781 ketosteroid_isomerase 92.5 1.2 2.5E-05 37.4 9.4 51 16-69 6-57 (122)
144 KOG0112 Large RNA-binding prot 92.2 0.044 9.5E-07 60.2 0.3 78 295-372 368-447 (975)
145 KOG4676 Splicing factor, argin 92.1 0.15 3.3E-06 51.1 3.9 72 300-371 8-84 (479)
146 KOG4307 RNA binding protein RB 92.0 0.3 6.4E-06 52.5 6.0 77 295-371 430-509 (944)
147 PRK11634 ATP-dependent RNA hel 91.0 0.51 1.1E-05 51.9 6.8 11 349-359 501-511 (629)
148 KOG2253 U1 snRNP complex, subu 90.0 0.46 9.9E-06 50.9 5.1 68 298-372 39-107 (668)
149 PF08675 RNA_bind: RNA binding 89.8 1.1 2.5E-05 35.4 5.9 53 300-359 10-62 (87)
150 PF05918 API5: Apoptosis inhib 88.6 0.13 2.9E-06 54.9 0.0 17 11-27 38-54 (556)
151 TIGR02096 conserved hypothetic 88.6 4.1 8.8E-05 34.3 9.3 62 18-82 3-67 (129)
152 PF15023 DUF4523: Protein of u 88.5 2.5 5.3E-05 37.0 7.6 75 295-374 82-160 (166)
153 KOG2591 c-Mpl binding protein, 88.3 0.69 1.5E-05 48.6 4.9 68 298-370 174-246 (684)
154 KOG3262 H/ACA small nucleolar 86.4 1.7 3.8E-05 39.3 5.7 8 317-324 95-102 (215)
155 PF08332 CaMKII_AD: Calcium/ca 84.4 24 0.00052 30.4 11.7 111 12-125 3-121 (128)
156 KOG2068 MOT2 transcription fac 84.3 0.33 7.1E-06 48.0 0.2 80 297-376 75-163 (327)
157 PF05918 API5: Apoptosis inhib 83.3 0.36 7.8E-06 51.7 0.0 12 55-66 214-225 (556)
158 PF06273 eIF-4B: Plant specifi 83.2 3.5 7.6E-05 43.0 7.1 9 449-457 208-216 (492)
159 KOG2135 Proteins containing th 82.8 0.7 1.5E-05 47.6 1.8 75 298-376 371-446 (526)
160 KOG0116 RasGAP SH3 binding pro 82.6 2 4.2E-05 44.6 5.0 11 349-359 302-312 (419)
161 KOG4285 Mitotic phosphoprotein 82.1 5.6 0.00012 39.0 7.5 69 299-372 197-266 (350)
162 PF03467 Smg4_UPF3: Smg-4/UPF3 80.3 2.2 4.8E-05 39.0 4.0 68 296-363 4-80 (176)
163 PF13577 SnoaL_4: SnoaL-like d 79.0 14 0.00029 30.7 8.4 67 15-83 9-78 (127)
164 PRK06958 single-stranded DNA-b 76.4 6.6 0.00014 36.0 5.9 10 300-309 6-15 (182)
165 PF03284 PHZA_PHZB: Phenazine 75.9 16 0.00034 32.1 7.6 101 13-115 18-128 (162)
166 COG4875 Uncharacterized protei 75.2 51 0.0011 28.1 10.2 110 8-126 33-147 (156)
167 PF03880 DbpA: DbpA RNA bindin 73.1 4.4 9.6E-05 31.2 3.4 67 301-373 2-74 (74)
168 PF11767 SET_assoc: Histone ly 72.8 15 0.00032 27.8 6.0 54 310-370 11-65 (66)
169 KOG4210 Nuclear localization s 70.8 2 4.4E-05 42.4 1.2 74 298-371 87-163 (285)
170 PRK11901 hypothetical protein; 66.6 70 0.0015 32.0 10.8 66 295-364 241-309 (327)
171 PF07576 BRAP2: BRCA1-associat 63.6 86 0.0019 26.3 9.4 65 300-364 14-80 (110)
172 KOG4574 RNA-binding protein (c 63.5 5 0.00011 44.5 2.4 73 300-376 299-374 (1007)
173 KOG4410 5-formyltetrahydrofola 63.2 60 0.0013 31.7 9.3 52 296-350 327-378 (396)
174 PF04847 Calcipressin: Calcipr 62.1 18 0.0004 33.2 5.6 61 312-376 8-71 (184)
175 PF07366 SnoaL: SnoaL-like pol 59.8 73 0.0016 26.5 8.7 60 20-83 5-67 (126)
176 COG4319 Ketosteroid isomerase 58.7 49 0.0011 28.9 7.2 95 28-128 26-130 (137)
177 cd06404 PB1_aPKC PB1 domain is 56.7 25 0.00054 27.9 4.6 47 23-69 22-69 (83)
178 KOG2044 5'-3' exonuclease HKE1 55.3 39 0.00084 37.7 7.4 60 17-85 171-237 (931)
179 PRK04537 ATP-dependent RNA hel 54.7 2.1E+02 0.0045 31.2 13.2 10 317-326 339-348 (572)
180 COG5073 VID24 Vacuolar import 51.1 6.5 0.00014 37.2 0.7 77 15-102 50-126 (272)
181 KOG2318 Uncharacterized conser 50.0 58 0.0013 34.9 7.5 75 298-372 173-302 (650)
182 KOG0132 RNA polymerase II C-te 49.6 29 0.00063 38.4 5.3 10 58-67 435-444 (894)
183 PRK10905 cell division protein 49.3 1.4E+02 0.0031 29.8 9.6 65 296-364 244-311 (328)
184 PF12870 Lumazine_bd: Lumazine 48.9 36 0.00078 27.4 4.9 46 74-124 66-111 (111)
185 PF03468 XS: XS domain; Inter 47.6 41 0.00089 28.5 5.0 45 312-357 30-75 (116)
186 KOG4676 Splicing factor, argin 46.4 3.2 6.9E-05 42.0 -2.2 63 300-364 152-214 (479)
187 KOG4660 Protein Mei2, essentia 46.4 33 0.00072 36.5 5.0 77 299-375 388-472 (549)
188 COG1512 Beta-propeller domains 39.6 38 0.00083 33.1 4.1 11 58-68 48-58 (271)
189 PRK08241 RNA polymerase factor 39.4 1.8E+02 0.0039 29.0 9.2 53 13-68 214-267 (339)
190 smart00593 RUN domain involved 39.1 30 0.00065 25.7 2.6 45 16-69 11-55 (64)
191 COG4907 Predicted membrane pro 38.9 56 0.0012 34.2 5.2 36 92-130 105-140 (595)
192 KOG3875 Peroxisomal biogenesis 37.2 80 0.0017 31.4 5.8 6 431-436 90-95 (362)
193 COG3631 Ketosteroid isomerase- 36.3 2.3E+02 0.005 24.5 8.1 70 15-84 6-79 (133)
194 PF15601 Imm42: Immunity prote 34.9 13 0.00027 32.4 -0.0 67 17-88 16-92 (134)
195 COG4907 Predicted membrane pro 34.1 36 0.00078 35.5 3.0 21 113-133 97-117 (595)
196 PF08863 YolD: YolD-like prote 33.3 73 0.0016 25.1 4.2 73 29-116 4-76 (92)
197 KOG4483 Uncharacterized conser 32.9 73 0.0016 32.7 4.8 55 300-358 392-446 (528)
198 KOG1924 RhoA GTPase effector D 32.4 94 0.002 34.8 5.9 15 21-35 310-324 (1102)
199 KOG3172 Small nuclear ribonucl 32.2 65 0.0014 26.6 3.6 9 361-369 61-69 (119)
200 PF14026 DUF4242: Protein of u 32.0 2.4E+02 0.0052 21.8 9.1 62 302-363 3-71 (77)
201 PF05941 Chordopox_A20R: Chord 32.0 1.4E+02 0.0031 29.9 6.7 100 16-128 173-281 (334)
202 PF15513 DUF4651: Domain of un 31.9 94 0.002 23.2 4.1 19 314-332 9-27 (62)
203 KOG0804 Cytoplasmic Zn-finger 31.7 2.1E+02 0.0045 30.0 7.9 67 299-365 74-142 (493)
204 PF00403 HMA: Heavy-metal-asso 31.6 1.7E+02 0.0037 20.9 5.7 57 301-361 1-61 (62)
205 PF12287 Caprin-1_C: Cytoplasm 31.4 94 0.002 30.8 5.2 7 439-445 308-314 (316)
206 PF12642 TpcC: Conjugative tra 29.8 2.6E+02 0.0057 26.2 8.1 88 13-124 140-231 (232)
207 PF02759 RUN: RUN domain; Int 28.5 27 0.00059 29.5 1.0 40 20-68 83-122 (133)
208 TIGR02960 SigX5 RNA polymerase 26.9 4.1E+02 0.0088 26.1 9.3 52 14-68 205-257 (324)
209 TIGR03636 L23_arch archaeal ri 26.7 2.3E+02 0.0049 22.1 5.7 57 304-360 18-75 (77)
210 PF14893 PNMA: PNMA 26.1 46 0.00099 33.6 2.2 72 299-374 18-95 (331)
211 KOG2295 C2H2 Zn-finger protein 25.4 1.6E+02 0.0036 31.5 6.1 9 106-114 165-173 (648)
212 PRK14548 50S ribosomal protein 25.3 2.2E+02 0.0049 22.6 5.6 55 306-360 27-82 (84)
213 PF07292 NID: Nmi/IFP 35 domai 24.7 73 0.0016 25.6 2.7 31 342-372 1-33 (88)
214 PRK07772 single-stranded DNA-b 24.3 1.7E+02 0.0036 27.0 5.4 9 300-308 6-14 (186)
215 COG5353 Uncharacterized protei 24.2 3.3E+02 0.0071 24.2 6.7 54 299-352 87-155 (161)
216 COG3254 Uncharacterized conser 24.2 2.3E+02 0.005 23.5 5.5 44 314-358 27-70 (105)
217 PF04094 DUF390: Protein of un 23.2 4.9E+02 0.011 29.1 9.2 22 307-328 7-28 (828)
218 PF03791 KNOX2: KNOX2 domain ; 23.0 41 0.0009 24.2 0.9 23 16-38 12-34 (52)
219 cd06402 PB1_p62 The PB1 domain 22.4 2.5E+02 0.0053 22.5 5.3 30 40-69 47-76 (87)
220 smart00596 PRE_C2HC PRE_C2HC d 22.2 1E+02 0.0023 23.5 3.0 59 314-374 2-63 (69)
221 PF07530 PRE_C2HC: Associated 21.8 1.5E+02 0.0032 22.5 3.8 60 314-375 2-64 (68)
222 PRK09636 RNA polymerase sigma 21.1 3.7E+02 0.0081 26.2 7.6 54 14-68 172-230 (293)
No 1
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-64 Score=507.42 Aligned_cols=353 Identities=40% Similarity=0.641 Sum_probs=236.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHhccCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcCCCCcceEEEeeeeeeee
Q 012564 6 ATPPSAQVVGNAFVEQYYHILHSTPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLDYKNYKAEIKTADAQNS 85 (460)
Q Consensus 6 ~~~~~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~s~d~q~s 85 (460)
...++++.||++||+|||++|++.|+.||+||.++|.|+|.+.|++|..++|+++|+++|++|+|..|+++|.+||+|.|
T Consensus 8 ~~~~~~~~vg~~Fv~qYY~~L~~~P~~lhrfY~~~S~ltr~~~dg~m~s~t~~~~I~~~i~sld~~~~s~eI~tvdsQ~S 87 (419)
T KOG0116|consen 8 SPVPTPQLVGNEFVRQYYNVLQNSPSKLHRFYMDDSVLTRPGLDGKMVSVTGLEAIHEKIMSLDYEVCSVEISTVDSQAS 87 (419)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhhChHHHHHHhhccceeeccCCCCceEEEecHHHhhhheeecCCCceeEEEEEEehhhh
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEEEEEEcCCCCcccEEEeeeeeecCCcEEEEccEEEEecCCccccc---CCCCCCCCCCCCCCCCCCCCCCC
Q 012564 86 HKEGVTVLVTGCLTGKDNLRRKFAQSFFLAPQDNGYFVLNDVFRYVDDGEVLEK---YPANSIDDAPAAPSIPDIDHTHV 162 (460)
Q Consensus 86 ~~~gili~V~G~~~~~~~~~~~F~q~F~L~~~~~~y~v~nDifr~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 162 (460)
+++||||+|+|+|++++.+.|+|+|||||++|+++||||||||||||++++.+. +..+.... .+...+.+...
T Consensus 88 ~~~GvvI~VtG~lt~~~~~rRkF~QtFfLapq~~~yfVlNDiFRfvde~~~~e~~~~~vp~~~~~----~~~~~~~~~~~ 163 (419)
T KOG0116|consen 88 LEKGVVIMVTGYLTNKDGPRRKFSQTFFLAPQEKGYFVLNDIFRFVDEEFEPEANTDEVPEANPA----VVVSVEKASQL 163 (419)
T ss_pred ccCCeEEEEEEEEEeCCCcceEEEEEEEEeecCCceEEEechhhhcccccccccccccCCCCCcc----eeecccccccc
Confidence 999999999999999999999999999999999999999999999998872211 00000000 00000000000
Q ss_pred CCCCCCCCCCCCccccccccc-cccCCCccccccccccccccccCCccccccccccccCCCCCcCCCCCCCchHHHHHhh
Q 012564 163 PDPPAPDPVTSHVEEDQNISE-RVYEPSEQERQLVTEREAVVESQSYAVETDASAMVESASSSALEDAPKKSYASIVRVV 241 (460)
Q Consensus 163 ~~~~~~e~~~~~~~~~~~~~~-~~~~~~~~~~~~v~e~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~p~kS~As~~~~~ 241 (460)
.++. . +....++.....+ ++..+.... +..+ ..++.+.+. .....+...+..++.+.+++|||+++..+
T Consensus 164 ~~~~-~--~~~~~~~~~~~~~~~V~~~~~~~---~~~~-~~~~~~ee~---v~~~~~~~~p~~~~~~~~~~s~asv~~~~ 233 (419)
T KOG0116|consen 164 VEAV-V--ESEPEPEPEPKAEDEVEVPEEAT---VEDE-AKEKTKEEL---VIQQTVSEAPAAPQGDAPKKSFASVVKVL 233 (419)
T ss_pred cccc-c--ccCCCCcccccccCceecccccc---cccc-ccccCchhh---cccccccCCCccccccccchhhhhhhhhc
Confidence 0000 0 0000000000000 000000000 0000 011111110 10111111122226788999999999988
Q ss_pred hCCCCCcccccCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCC-CCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHH
Q 012564 242 KGGSGPTKVYVPTNTVKVTTKKTENQPIKSEN---PPSSETSAPV-STDAPESSNAHEEVEGHSIYIRNLPDTMTVASLE 317 (460)
Q Consensus 242 ~~~~~p~~v~~~~~~p~~~~~~~~~~~~p~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lfV~nLp~~vte~~L~ 317 (460)
+.+.++..+...+ ++. .++. +|... .....++.+. .....+...........+|||+|||++++.++|+
T Consensus 234 ~~~~~~~~~~~~p--~~~---~~~~--~p~~~~~~~~~s~~~~p~~~~~~~n~~~~~~~~~~~~i~V~nlP~da~~~~l~ 306 (419)
T KOG0116|consen 234 KKSAAVQQSKGSP--PQI---QPQQ--QPSTKPQAERQSKPPSPVRESKSGNSNNQEPRADGLGIFVKNLPPDATPAELE 306 (419)
T ss_pred ccccccceeccCC--Ccc---cccc--CCccCcchhhccCCCCccccccccccCCcceeecccceEeecCCCCCCHHHHH
Confidence 7665553222111 111 0011 11111 0111111110 1111122334445566779999999999999999
Q ss_pred HHhhcCCCeeEEEEEEeC--CCCceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEEecccCCCC
Q 012564 318 VEFKKFGPVKQGGIQVRH--NKGYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEKKKKTRVG 379 (460)
Q Consensus 318 ~~F~~~G~v~~~~i~~~~--~~g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~~~~~~~~g 379 (460)
++|.+||.|+...|.++. .+..|||||+|.+.++++.||.+.++.|++++|.|+++++..++
T Consensus 307 ~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~~~~g 370 (419)
T KOG0116|consen 307 EVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRPGFRG 370 (419)
T ss_pred HHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccccccc
Confidence 999999999999998887 33359999999999999999999999999999999999987554
No 2
>KOG2104 consensus Nuclear transport factor 2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4e-34 Score=232.20 Aligned_cols=117 Identities=29% Similarity=0.539 Sum_probs=113.4
Q ss_pred CHHHHHHHHHHHHHHHhccCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcCCCCcceEEEeeeeeeeeCCCc
Q 012564 10 SAQVVGNAFVEQYYHILHSTPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLDYKNYKAEIKTADAQNSHKEG 89 (460)
Q Consensus 10 ~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~s~d~q~s~~~g 89 (460)
..+.||..||++||.+|+.+|..|..||.+.|+|||+|. .+.|.++|.+||.+|||+.|++.|+++||||+.++|
T Consensus 5 ~~e~v~~~FvqhYY~~FD~dR~ql~~lY~~~S~LTfEGq-----q~qG~~~IveKl~sLpFqkiqh~IttvD~QPt~~g~ 79 (126)
T KOG2104|consen 5 VYEAVAKAFVQHYYSLFDNDRSQLGALYIDTSMLTFEGQ-----QIQGKDAIVEKLTSLPFQKIQHSITTVDSQPTPDGG 79 (126)
T ss_pred cHHHHHHHHHHHHHHHhcCchhHhhhhhcccceeeEcch-----hhcchHHHHHHHhcCChhhhhceeeecccccCCCCc
Confidence 568999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred EEEEEEEEEEcCCCCcccEEEeeeeeec-CCcEEEEccEEEEe
Q 012564 90 VTVLVTGCLTGKDNLRRKFAQSFFLAPQ-DNGYFVLNDVFRYV 131 (460)
Q Consensus 90 ili~V~G~~~~~~~~~~~F~q~F~L~~~-~~~y~v~nDifr~~ 131 (460)
|||+|+|.|++++++..+|+|.|+|.+. .++|||.|||||+-
T Consensus 80 ilv~V~G~Lk~dEd~~~~FsQvF~L~~n~~~~~~v~ndiFRLn 122 (126)
T KOG2104|consen 80 ILVMVVGQLKLDEDPILRFSQVFLLKPNIQGSYYVFNDIFRLN 122 (126)
T ss_pred EEEEEeeeeeeccCCccceeeEEEEeEcCCCCEEEEeeeEEEe
Confidence 9999999999999999999999999988 47999999999984
No 3
>cd00780 NTF2 Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins.
Probab=100.00 E-value=2.3e-32 Score=234.68 Aligned_cols=118 Identities=47% Similarity=0.750 Sum_probs=114.0
Q ss_pred CHHHHHHHHHHHHHHHhccCcchhcccccCCceEEeeC-CCCcceeeccHHHHHHHHhcCCCCcceEEEeeeeeeeeCCC
Q 012564 10 SAQVVGNAFVEQYYHILHSTPELVFRFYQDSSVLSRPD-SNGVMTSVTTMEGINQKILSLDYKNYKAEIKTADAQNSHKE 88 (460)
Q Consensus 10 ~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~S~l~~~~-~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~s~d~q~s~~~ 88 (460)
++++||+.||++||++|+++|+.|++||.++|+|+|++ . .+.|.++|.++|++|++..++++|.++|||++.++
T Consensus 1 ~~~~v~~~Fv~~YY~~l~~~~~~L~~fY~~~s~~~~~~~~-----~~~g~~~I~~~l~~lp~~~~~~~i~~~d~q~~~~~ 75 (119)
T cd00780 1 SAEDVAKAFVQQYYSIFDNNREGLHRLYGDTSMLSREGMK-----QVTGRDAIVEKLSSLPFQKTKHKITTVDSQPTPSG 75 (119)
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHhhcCCCcEEEECCce-----EecCHHHHHHHHHhCCCcceEEEEEEEeeeEcCCC
Confidence 47899999999999999999999999999999999999 6 88999999999999998888999999999999999
Q ss_pred cEEEEEEEEEEcCCCCcccEEEeeeeeecCCcEEEEccEEEEec
Q 012564 89 GVTVLVTGCLTGKDNLRRKFAQSFFLAPQDNGYFVLNDVFRYVD 132 (460)
Q Consensus 89 gili~V~G~~~~~~~~~~~F~q~F~L~~~~~~y~v~nDifr~~~ 132 (460)
+|||+|+|+|+.++...++|+|+|+|.+++++|||+||||||+|
T Consensus 76 ~ili~V~G~~~~~~~~~~~F~q~F~L~~~~~~~~I~nD~fr~~~ 119 (119)
T cd00780 76 GVIVMVTGSLKLDEQPPRKFSQTFVLAPQNGGYFVLNDIFRFVD 119 (119)
T ss_pred CEEEEEEEEEEECCCCceeEeEEEEEEecCCeEEEEeeEEEecC
Confidence 99999999999999999999999999999999999999999986
No 4
>PF02136 NTF2: Nuclear transport factor 2 (NTF2) domain; InterPro: IPR002075 Nuclear transport factor 2 (NTF2) is a homodimer which stimulates efficient nuclear import of a cargo protein. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. NTF2 folds into a cone with a deep hydrophobic cavity, the opening of which is surrounded by several negatively charged residues. RanGDP binds to NTF2 by inserting a conserved phenylalanine residue into the hydrophobic pocket of NTF2 and making electrostatic interactions with the conserved negatively charged residues that surround the cavity []. This entry represent the main structural domain of NTF2 and related domains which are found in other nuclear import proteins.; GO: 0006810 transport, 0005622 intracellular; PDB: 3UJM_B 1JKG_B 1JN5_B 1M98_A 3MG1_A 3MG2_A 3MG3_B 2Z76_A 2Z7A_D 2Z77_A ....
Probab=99.93 E-value=4.6e-26 Score=194.87 Aligned_cols=113 Identities=37% Similarity=0.646 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHhcc-Ccchhcccc-cCCceEEeeCCCCcceeeccHHHHHHHHhcCCCCcceEEEeeeeee--eeCCCc
Q 012564 14 VGNAFVEQYYHILHS-TPELVFRFY-QDSSVLSRPDSNGVMTSVTTMEGINQKILSLDYKNYKAEIKTADAQ--NSHKEG 89 (460)
Q Consensus 14 vg~~Fv~~YY~~l~~-~p~~l~~fY-~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~s~d~q--~s~~~g 89 (460)
||+.||++||++|++ +|+.|++|| .+.|.++|.+. ..+.|.++|+++|.+|+...++++|.++||| ++.+++
T Consensus 1 v~~~Fv~~Yy~~~d~~~~~~L~~~Y~~~~s~~~~~~~----~~~~G~~~I~~~~~~l~~~~~~~~i~~~d~qp~~~~~~~ 76 (118)
T PF02136_consen 1 VANSFVQQYYQLFDSGDREGLHKLYHDDASFLTWNGN----RPVVGREAIQEFFQSLPATGVQHRITSVDCQPSPSSDGS 76 (118)
T ss_dssp HHHHHHHHHHHHHHHTHGGGGGGGEEEEEEEEEETTE----CEEESHHHHHHHHHHHTTSSEEEEEEEEEEEEEEECCSE
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHcCCCeeecCCCc----hhhhhHHHHHHHHhcCCCcccEEEecccccccccccCCc
Confidence 799999999999999 999999999 77778888875 3688999999999999999889999999999 578899
Q ss_pred EEEEEEEEEEcCCCC-cccEEEeeeeeecCCcEEEEccEEEE
Q 012564 90 VTVLVTGCLTGKDNL-RRKFAQSFFLAPQDNGYFVLNDVFRY 130 (460)
Q Consensus 90 ili~V~G~~~~~~~~-~~~F~q~F~L~~~~~~y~v~nDifr~ 130 (460)
|+|+|+|.++.++.+ .++|+|+|+|.+.+++|+|.||||||
T Consensus 77 i~i~v~G~~~~~~~~~~~~F~q~FvL~~~~~~~~I~nd~~r~ 118 (118)
T PF02136_consen 77 ILITVTGQFKEDDNPNPRRFSQTFVLVPQNNGYFIANDIFRF 118 (118)
T ss_dssp EEEEEEEEEEETTSEEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEEeEEEecCCCcccEEEEEEEEEEcCCEEEEEeeEEEC
Confidence 999999999999876 69999999999999999999999998
No 5
>KOG4353 consensus RNA export factor NXT1 [RNA processing and modification]
Probab=99.90 E-value=3.3e-24 Score=176.91 Aligned_cols=114 Identities=27% Similarity=0.411 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHhccCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcCCCCcceEEEeeeeeeeeCCC----
Q 012564 13 VVGNAFVEQYYHILHSTPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLDYKNYKAEIKTADAQNSHKE---- 88 (460)
Q Consensus 13 ~vg~~Fv~~YY~~l~~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~s~d~q~s~~~---- 88 (460)
.-+.+||+.||..|+++|..|.+||.++|+|+|+|+ .++|++.|.+.+..||.+ ++.|.++||||.+++
T Consensus 14 r~A~eFv~~YY~smD~rR~~i~rlY~~~atlvWNGn-----~v~g~esls~ff~~LPsS--~~qi~~lD~Qpv~dqat~~ 86 (139)
T KOG4353|consen 14 RAAEEFVNVYYSSMDKRRRGIGRLYLDNATLVWNGN-----PVSGTESLSEFFNMLPSS--EFQINDLDCQPVHDQATGS 86 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhccceEEEcCC-----cchhHHHHHHHHHhCCCc--cccccccccccchhhcccc
Confidence 468899999999999999999999999999999999 999999999999999977 999999999997653
Q ss_pred --cEEEEEEEEEEcCCCCcccEEEeeeeeecCCcEE----EEccEEEEecC
Q 012564 89 --GVTVLVTGCLTGKDNLRRKFAQSFFLAPQDNGYF----VLNDVFRYVDD 133 (460)
Q Consensus 89 --gili~V~G~~~~~~~~~~~F~q~F~L~~~~~~y~----v~nDifr~~~~ 133 (460)
+|||+|+|.|+.+++..|.|.|||.|..+...|- |.+|||||+|-
T Consensus 87 q~~vLvvvsGtVkFdG~k~r~F~qt~ll~~e~~~~k~~~~v~Sd~fr~~d~ 137 (139)
T KOG4353|consen 87 QTTVLVVVSGTVKFDGNKQRVFNQTFLLTAEDPPFKTVWKVASDCFRFQDW 137 (139)
T ss_pred cceEEEEEeeeEEEcCCccccccceeEEeecCCccchhhhhhhhhhhhhhc
Confidence 5999999999999999999999999999987766 99999999874
No 6
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.73 E-value=8.2e-17 Score=142.37 Aligned_cols=80 Identities=24% Similarity=0.354 Sum_probs=74.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
...++|||+||++++++++|+++|++||.|+++.|+.+..+ .++||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 34689999999999999999999999999999999988766 4899999999999999999988 99999999999998
Q ss_pred ccC
Q 012564 374 KKT 376 (460)
Q Consensus 374 ~~~ 376 (460)
+++
T Consensus 112 ~~~ 114 (144)
T PLN03134 112 NDR 114 (144)
T ss_pred CcC
Confidence 764
No 7
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=1.1e-15 Score=134.93 Aligned_cols=75 Identities=25% Similarity=0.429 Sum_probs=67.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecc
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKK 374 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~ 374 (460)
..++|||+|||.++.+.+|+++|.+||.|..|.| .+.. ..+||||+|+++.+|+.||... +..++|+.|+|++.+
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieL--K~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIEL--KNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEe--ccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 3589999999999999999999999999998665 2223 3899999999999999999998 999999999999987
No 8
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.60 E-value=2.2e-14 Score=144.44 Aligned_cols=78 Identities=28% Similarity=0.418 Sum_probs=69.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCC--ceEEEEEEcCHHHHHHHHHHC-CCCCCC--eEEEEEec
Q 012564 299 GHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKG--YCFGFVEFQSSSSVDNAIQAS-PITIGG--QEAFVEKK 373 (460)
Q Consensus 299 ~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g--~g~aFV~F~~~e~a~~Al~~~-~~~i~g--r~i~V~~~ 373 (460)
.++|||+|||.++++++|+++|++||.|+.+.|+.++.++ ++||||+|.+.++|++||+.+ +..|.+ +.|+|.++
T Consensus 193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a 272 (346)
T TIGR01659 193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLA 272 (346)
T ss_pred cceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEEC
Confidence 4689999999999999999999999999999998887653 799999999999999999999 777755 68889888
Q ss_pred ccC
Q 012564 374 KKT 376 (460)
Q Consensus 374 ~~~ 376 (460)
+..
T Consensus 273 ~~~ 275 (346)
T TIGR01659 273 EEH 275 (346)
T ss_pred Ccc
Confidence 765
No 9
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=2.7e-14 Score=125.41 Aligned_cols=79 Identities=29% Similarity=0.428 Sum_probs=69.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecccC
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKKKT 376 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~~~ 376 (460)
-.++|||+||+..+++.+|+.+|..||+|..| ++..+ ..|||||||+++.+|+.|+..| +..|.|..|+||.....
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsv--WvArn-PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSV--WVARN-PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeE--EEeec-CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 46899999999999999999999999999984 44443 4799999999999999999999 99999999999998765
Q ss_pred CCC
Q 012564 377 RVG 379 (460)
Q Consensus 377 ~~g 379 (460)
.++
T Consensus 86 ~r~ 88 (195)
T KOG0107|consen 86 PRG 88 (195)
T ss_pred ccc
Confidence 443
No 10
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.52 E-value=2.7e-13 Score=143.67 Aligned_cols=72 Identities=26% Similarity=0.344 Sum_probs=66.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcC--CCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEeccc
Q 012564 299 GHSIYIRNLPDTMTVASLEVEFKKF--GPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKKK 375 (460)
Q Consensus 299 ~~~lfV~nLp~~vte~~L~~~F~~~--G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~~ 375 (460)
.++|||+||++++++++|+++|++| |.|++|.++ ++||||+|.+.++|++||+.+ +.+|+|+.|+|+++++
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp 306 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKP 306 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 4789999999999999999999999 999987652 469999999999999999988 9999999999999988
Q ss_pred C
Q 012564 376 T 376 (460)
Q Consensus 376 ~ 376 (460)
.
T Consensus 307 ~ 307 (578)
T TIGR01648 307 V 307 (578)
T ss_pred C
Confidence 6
No 11
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=7e-14 Score=116.65 Aligned_cols=79 Identities=18% Similarity=0.229 Sum_probs=72.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEe
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEK 372 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~ 372 (460)
-..+++|||+||++.++|++|.++|+++|.|+.|.+-+++.+ ..||+||+|.+.++|..||..+ +..|+.+.|+|++
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 345799999999999999999999999999999877788777 4899999999999999999999 9999999999998
Q ss_pred cc
Q 012564 373 KK 374 (460)
Q Consensus 373 ~~ 374 (460)
.-
T Consensus 113 D~ 114 (153)
T KOG0121|consen 113 DA 114 (153)
T ss_pred cc
Confidence 75
No 12
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.49 E-value=1e-12 Score=132.46 Aligned_cols=82 Identities=23% Similarity=0.393 Sum_probs=75.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEE
Q 012564 294 HEEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFV 370 (460)
Q Consensus 294 ~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V 370 (460)
......++|||+|||+++|+++|+++|++||.|+.|+|+.+..+ .++||||+|.+.++|++||+.| +..|.++.|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 35567899999999999999999999999999999999888766 4899999999999999999998 99999999999
Q ss_pred Eeccc
Q 012564 371 EKKKK 375 (460)
Q Consensus 371 ~~~~~ 375 (460)
.++++
T Consensus 182 ~~a~p 186 (346)
T TIGR01659 182 SYARP 186 (346)
T ss_pred ecccc
Confidence 98765
No 13
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.43 E-value=1.4e-12 Score=132.35 Aligned_cols=81 Identities=23% Similarity=0.259 Sum_probs=74.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEe
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEK 372 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~ 372 (460)
...++.|||+|||+++++++|+++|++||.|.+++|+.+..+ .+|||||+|.+.++|.+||..| |..|+||.|+|++
T Consensus 266 ~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~ 345 (352)
T TIGR01661 266 DGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSF 345 (352)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345678999999999999999999999999999999998755 4999999999999999999999 9999999999999
Q ss_pred cccC
Q 012564 373 KKKT 376 (460)
Q Consensus 373 ~~~~ 376 (460)
+..+
T Consensus 346 ~~~~ 349 (352)
T TIGR01661 346 KTNK 349 (352)
T ss_pred ccCC
Confidence 8754
No 14
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=4.6e-12 Score=119.95 Aligned_cols=81 Identities=20% Similarity=0.411 Sum_probs=75.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCC--ceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEe
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKG--YCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEK 372 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g--~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~ 372 (460)
..+-++|||+-|+++++|+.|+..|+.||+|+.|.|+.+..++ +|||||+|+++-++..|.+.. +++|+|+.|.|++
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 3457999999999999999999999999999999999987774 999999999999999999988 9999999999998
Q ss_pred cccC
Q 012564 373 KKKT 376 (460)
Q Consensus 373 ~~~~ 376 (460)
-+.+
T Consensus 178 ERgR 181 (335)
T KOG0113|consen 178 ERGR 181 (335)
T ss_pred cccc
Confidence 8765
No 15
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.40 E-value=9.1e-13 Score=101.01 Aligned_cols=68 Identities=25% Similarity=0.443 Sum_probs=62.3
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEE
Q 012564 302 IYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAF 369 (460)
Q Consensus 302 lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~ 369 (460)
|||+|||.++++++|+++|++||.|..+.+..+... .++||||+|.+.++|++||+.+ +..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999988886333 5899999999999999999988 9999999885
No 16
>PLN03213 repressor of silencing 3; Provisional
Probab=99.38 E-value=1.3e-12 Score=130.66 Aligned_cols=79 Identities=20% Similarity=0.291 Sum_probs=72.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCH--HHHHHHHHHC-CCCCCCeEEEEEe
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSS--SSVDNAIQAS-PITIGGQEAFVEK 372 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~--e~a~~Al~~~-~~~i~gr~i~V~~ 372 (460)
...+.+||||||++.+++++|+.+|..||.|++|.|+ +.+|+|||||+|.+. .++.+||..| +..++|+.|+|+.
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 4456899999999999999999999999999999987 556799999999987 7899999999 9999999999999
Q ss_pred cccC
Q 012564 373 KKKT 376 (460)
Q Consensus 373 ~~~~ 376 (460)
+++.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 9876
No 17
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=3.3e-12 Score=122.31 Aligned_cols=79 Identities=22% Similarity=0.323 Sum_probs=73.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecccC
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKKKT 376 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~~~ 376 (460)
..++|+|.|||+...+-||+.+|.+||+|.+|.|++.....||||||+|++.++|++|-+++ +..|.||+|.|..+..+
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 35889999999999999999999999999999998887778999999999999999999999 99999999999987654
No 18
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.36 E-value=2.8e-12 Score=130.09 Aligned_cols=78 Identities=15% Similarity=0.329 Sum_probs=73.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEeccc
Q 012564 299 GHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKKK 375 (460)
Q Consensus 299 ~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~~ 375 (460)
.++|||+|||.++++++|+++|++||+|..|+|+.++.+ .+|||||+|.+.++|++||+.+ +..|.|+.|+|+++++
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 578999999999999999999999999999999988766 4899999999999999999998 9999999999999876
Q ss_pred C
Q 012564 376 T 376 (460)
Q Consensus 376 ~ 376 (460)
.
T Consensus 83 ~ 83 (352)
T TIGR01661 83 S 83 (352)
T ss_pred c
Confidence 5
No 19
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.35 E-value=3.8e-12 Score=120.88 Aligned_cols=77 Identities=16% Similarity=0.179 Sum_probs=69.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEEecccC
Q 012564 299 GHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEKKKKT 376 (460)
Q Consensus 299 ~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~~~~~~ 376 (460)
.++|||+||++.+++++|+++|+.||.|.+|.|..++. .++||||+|.+.++++.||...+..|+|+.|+|..++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~-~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE-RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 58999999999999999999999999999999877764 368999999999999999975599999999999988743
No 20
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.35 E-value=1.5e-12 Score=119.85 Aligned_cols=79 Identities=19% Similarity=0.318 Sum_probs=72.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEEec
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEKK 373 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~~~ 373 (460)
+..-++||||+|+|++..+.|+++|++||+|....|+.|+.+ .|||+||+|.|.++|.+|++...-.|+||+..+..+
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLA 88 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchh
Confidence 445689999999999999999999999999999999999888 499999999999999999998888999999888866
Q ss_pred c
Q 012564 374 K 374 (460)
Q Consensus 374 ~ 374 (460)
.
T Consensus 89 ~ 89 (247)
T KOG0149|consen 89 S 89 (247)
T ss_pred h
Confidence 4
No 21
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=2.8e-11 Score=111.83 Aligned_cols=82 Identities=26% Similarity=0.347 Sum_probs=76.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCC--ceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEE
Q 012564 295 EEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKG--YCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVE 371 (460)
Q Consensus 295 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g--~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~ 371 (460)
...+..+|-|.||+.++++++|++||..||.|.++.|..++.+| +|||||.|.+.++|.+||+.| |+-++.-.|+|+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 34478999999999999999999999999999999999999885 999999999999999999999 999999999999
Q ss_pred ecccC
Q 012564 372 KKKKT 376 (460)
Q Consensus 372 ~~~~~ 376 (460)
+++|+
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99985
No 22
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.28 E-value=1.9e-11 Score=110.10 Aligned_cols=78 Identities=23% Similarity=0.311 Sum_probs=73.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecc
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKK 374 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~ 374 (460)
.-++|-|-||.+.++.++|+.+|++||.|-+|.|..+..+ .+|||||-|.+..+|+.||++| +.+|+|+.|.|..++
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 3578999999999999999999999999999999999887 4999999999999999999999 999999999999887
Q ss_pred c
Q 012564 375 K 375 (460)
Q Consensus 375 ~ 375 (460)
-
T Consensus 92 y 92 (256)
T KOG4207|consen 92 Y 92 (256)
T ss_pred c
Confidence 4
No 23
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.26 E-value=2.5e-11 Score=113.51 Aligned_cols=77 Identities=19% Similarity=0.239 Sum_probs=69.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEEecc
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEKKK 374 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~~~~ 374 (460)
..+++|||+||++.+|+++|+++|+.||+|.+|.|..+..+ ++||||+|.++++++.||...+..|.++.|.|....
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et-~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEY-ACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCc-ceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 35799999999999999999999999999999998777443 579999999999999999777999999999998754
No 24
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.26 E-value=1.7e-11 Score=94.41 Aligned_cols=68 Identities=31% Similarity=0.500 Sum_probs=60.0
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEE
Q 012564 302 IYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAF 369 (460)
Q Consensus 302 lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~ 369 (460)
|||+|||+++++++|+++|+.||.|..+.+...+.. .+++|||+|.+.++|++|+..+ +..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999888776553 4899999999999999999999 6999999875
No 25
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.21 E-value=5.1e-11 Score=126.75 Aligned_cols=79 Identities=20% Similarity=0.341 Sum_probs=73.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecc
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKK 374 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~ 374 (460)
..++|||+||+.++++++|+++|+.||.|++++|..+..+ .+|||||+|.+.++|.+||+.+ +..|+|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 4579999999999999999999999999999999888765 4899999999999999999999 999999999999887
Q ss_pred cC
Q 012564 375 KT 376 (460)
Q Consensus 375 ~~ 376 (460)
+.
T Consensus 283 ~p 284 (612)
T TIGR01645 283 TP 284 (612)
T ss_pred CC
Confidence 64
No 26
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.18 E-value=3.6e-11 Score=101.39 Aligned_cols=81 Identities=21% Similarity=0.350 Sum_probs=76.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCC--ceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEE
Q 012564 295 EEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKG--YCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVE 371 (460)
Q Consensus 295 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g--~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~ 371 (460)
...++..|||.++...+++++|.+.|..||+|+.+.+.+++.+| +||+.|+|++.+.|++||..+ +..|.|+.|.|+
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 45678999999999999999999999999999999999999886 999999999999999999999 899999999999
Q ss_pred eccc
Q 012564 372 KKKK 375 (460)
Q Consensus 372 ~~~~ 375 (460)
++--
T Consensus 148 w~Fv 151 (170)
T KOG0130|consen 148 WCFV 151 (170)
T ss_pred EEEe
Confidence 8753
No 27
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=3.6e-10 Score=112.41 Aligned_cols=73 Identities=23% Similarity=0.357 Sum_probs=67.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecccC
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKKKT 376 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~~~ 376 (460)
.-+-|||+||+.++|++.|+++|++||.|.+|+.+ +-||||.|.+.++|.+||+.+ +.+|+|..|.|..++|.
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~------rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~ 331 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP------RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPV 331 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeecc------cceeEEeecchHHHHHHHHHhcCceecCceEEEEecCCh
Confidence 35789999999999999999999999999987653 459999999999999999999 99999999999999986
No 28
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.18 E-value=5.4e-11 Score=126.57 Aligned_cols=76 Identities=18% Similarity=0.346 Sum_probs=70.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
..++|||+||++++++++|+++|++||.|++|.|++++.+ .+|||||+|.+.++|++||+.+ +..|+||.|+|...
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 4689999999999999999999999999999999988766 4999999999999999999998 99999999999854
No 29
>smart00362 RRM_2 RNA recognition motif.
Probab=99.17 E-value=1.5e-10 Score=87.99 Aligned_cols=71 Identities=35% Similarity=0.588 Sum_probs=63.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEE
Q 012564 301 SIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVE 371 (460)
Q Consensus 301 ~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~ 371 (460)
+|||+|||..+++++|+++|.+||.|..+.+..+....+++|||+|.+.++|++|+..+ +..|.|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999998776655335789999999999999999998 799999998873
No 30
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=2.9e-10 Score=106.55 Aligned_cols=78 Identities=24% Similarity=0.422 Sum_probs=71.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 295 EEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 295 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
..++.++|||||++..++|++|++.|+.||.|..|+| -+-+||+||.|++.|+|..||..+ +.+|+|+.+++.+-
T Consensus 160 ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRv----Fk~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWG 235 (321)
T KOG0148|consen 160 SSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRV----FKDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWG 235 (321)
T ss_pred CCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEE----ecccceEEEEecchhhHHHHHHHhcCceeCceEEEEecc
Confidence 3457899999999999999999999999999999888 344799999999999999999999 99999999999998
Q ss_pred ccC
Q 012564 374 KKT 376 (460)
Q Consensus 374 ~~~ 376 (460)
+..
T Consensus 236 Ke~ 238 (321)
T KOG0148|consen 236 KEG 238 (321)
T ss_pred ccC
Confidence 865
No 31
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.11 E-value=4.2e-10 Score=90.82 Aligned_cols=79 Identities=20% Similarity=0.230 Sum_probs=69.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEeccc
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKKK 375 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~~ 375 (460)
...+-|||+|||+++|.+++.++|.+||.|..++|-....+ +|-|||.|++..+|++|++.| +..+.++-+.|-.-.+
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T-rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET-RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc-CceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 34688999999999999999999999999999776443333 888999999999999999999 9999999999987665
Q ss_pred C
Q 012564 376 T 376 (460)
Q Consensus 376 ~ 376 (460)
.
T Consensus 95 ~ 95 (124)
T KOG0114|consen 95 E 95 (124)
T ss_pred H
Confidence 4
No 32
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.11 E-value=2.5e-10 Score=123.19 Aligned_cols=81 Identities=23% Similarity=0.474 Sum_probs=73.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
....++|||+||+.++++++|+++|++||.|++|+|+.+... .+|||||+|.+.++|.+||..+ +..|+|+.|+|.++
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 345678999999999999999999999999999999888544 5899999999999999999999 99999999999998
Q ss_pred ccC
Q 012564 374 KKT 376 (460)
Q Consensus 374 ~~~ 376 (460)
..+
T Consensus 362 ~~k 364 (562)
T TIGR01628 362 QRK 364 (562)
T ss_pred cCc
Confidence 764
No 33
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.10 E-value=4.6e-10 Score=119.67 Aligned_cols=79 Identities=23% Similarity=0.298 Sum_probs=72.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecc
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKK 374 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~ 374 (460)
..++|||+|||..+++++|+++|++||.|..+.|+.+..+ .+|||||+|.+.++|..||..| +..|+|+.|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 4689999999999999999999999999999998887655 4899999999999999999999 999999999999886
Q ss_pred cC
Q 012564 375 KT 376 (460)
Q Consensus 375 ~~ 376 (460)
..
T Consensus 374 ~~ 375 (509)
T TIGR01642 374 VG 375 (509)
T ss_pred cC
Confidence 43
No 34
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.08 E-value=7.8e-10 Score=109.52 Aligned_cols=78 Identities=21% Similarity=0.334 Sum_probs=72.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHh-hcCCCeeEEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecc
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEF-KKFGPVKQGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKK 374 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F-~~~G~v~~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~ 374 (460)
..+++||.|||+++.+.+|++|| ++.|+|.+|.+..|... .++||.|+|+++|.+++|++.| .+.++||.|.|.+..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 34679999999999999999999 58999999999998776 5999999999999999999999 999999999999876
Q ss_pred c
Q 012564 375 K 375 (460)
Q Consensus 375 ~ 375 (460)
.
T Consensus 123 d 123 (608)
T KOG4212|consen 123 D 123 (608)
T ss_pred c
Confidence 4
No 35
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.08 E-value=3.9e-10 Score=121.77 Aligned_cols=75 Identities=25% Similarity=0.404 Sum_probs=69.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecc
Q 012564 300 HSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKK 374 (460)
Q Consensus 300 ~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~ 374 (460)
.+|||+|||.++|+++|+++|++||.|.+|+|..+..+ .+|||||+|.+.++|++||+.+ ...|+|+.|+|.+..
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccc
Confidence 37999999999999999999999999999999888765 4899999999999999999999 677999999998865
No 36
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.08 E-value=5e-10 Score=117.82 Aligned_cols=77 Identities=19% Similarity=0.356 Sum_probs=71.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEeccc
Q 012564 299 GHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKKK 375 (460)
Q Consensus 299 ~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~~ 375 (460)
.++|||+|||..+++++|+++|++||.|..|.|..+..+ .+|||||+|.+.++|.+||..| +..|.|+.|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 689999999999999999999999999999999887765 4899999999999999999999 9999999999999763
No 37
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.07 E-value=5.2e-10 Score=117.64 Aligned_cols=79 Identities=20% Similarity=0.249 Sum_probs=71.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEEec
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEKK 373 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~~~ 373 (460)
+.+.++|||+|||..+++++|+++|++||.|..|.|+.+..+ .+|||||+|.+.++|.+||...+..|.|+.|.|...
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSS 165 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeec
Confidence 456789999999999999999999999999999999888765 489999999999999999986699999999999875
Q ss_pred c
Q 012564 374 K 374 (460)
Q Consensus 374 ~ 374 (460)
.
T Consensus 166 ~ 166 (457)
T TIGR01622 166 Q 166 (457)
T ss_pred c
Confidence 4
No 38
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.06 E-value=6.3e-10 Score=118.27 Aligned_cols=74 Identities=19% Similarity=0.320 Sum_probs=65.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHC-CCCCC-CeEEEEE
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQAS-PITIG-GQEAFVE 371 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~-~~~i~-gr~i~V~ 371 (460)
.+++|||+|||.++++++|+++|++||.|..++|+++... .++||||+|.+.++|++||+.| +..|. ++.|.|.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 3589999999999999999999999999999999888443 5999999999999999999999 77774 6665554
No 39
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.6e-10 Score=105.14 Aligned_cols=80 Identities=26% Similarity=0.387 Sum_probs=75.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
.+.++|||++|..++++.-|...|-.||.|+.+.|.+|..+ .++|+||+|+..++|.+||..| ..+|.||.|+|..+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 35689999999999999999999999999999999998766 5999999999999999999999 99999999999999
Q ss_pred ccC
Q 012564 374 KKT 376 (460)
Q Consensus 374 ~~~ 376 (460)
+|.
T Consensus 88 kP~ 90 (298)
T KOG0111|consen 88 KPE 90 (298)
T ss_pred CCc
Confidence 986
No 40
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.02 E-value=2e-09 Score=82.12 Aligned_cols=71 Identities=31% Similarity=0.517 Sum_probs=63.8
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEE
Q 012564 301 SIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVE 371 (460)
Q Consensus 301 ~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~ 371 (460)
+|||+|||..+++++|+++|..||.|..+.+..+... .++++||+|.+.++|+.|++.+ +..++++.|.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 4899999999999999999999999999888765543 5889999999999999999999 777999999886
No 41
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.02 E-value=1.1e-09 Score=115.81 Aligned_cols=78 Identities=14% Similarity=0.136 Sum_probs=70.3
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 296 EVEGHSIYIRNLPD-TMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 296 ~~~~~~lfV~nLp~-~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
...+++|||+||++ .+++++|+++|++||.|.+|+|+.++ +|||||+|.+.++|.+||..| +..|.|+.|+|..+
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~---~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s 348 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK---KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPS 348 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 34678999999998 69999999999999999999887653 689999999999999999998 99999999999987
Q ss_pred ccC
Q 012564 374 KKT 376 (460)
Q Consensus 374 ~~~ 376 (460)
+..
T Consensus 349 ~~~ 351 (481)
T TIGR01649 349 KQQ 351 (481)
T ss_pred ccc
Confidence 654
No 42
>smart00360 RRM RNA recognition motif.
Probab=99.02 E-value=1.3e-09 Score=82.25 Aligned_cols=68 Identities=28% Similarity=0.450 Sum_probs=60.6
Q ss_pred EcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEE
Q 012564 304 IRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVE 371 (460)
Q Consensus 304 V~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~ 371 (460)
|+|||..+++++|+++|++||.|..+.|..+... .++||||+|.+.++|.+|+..+ +..++|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5799999999999999999999999888766543 4889999999999999999999 789999998874
No 43
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.02 E-value=9.1e-10 Score=116.55 Aligned_cols=73 Identities=30% Similarity=0.436 Sum_probs=65.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC---CCCCCCeEEEEEeccc
Q 012564 299 GHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS---PITIGGQEAFVEKKKK 375 (460)
Q Consensus 299 ~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~---~~~i~gr~i~V~~~~~ 375 (460)
++.|||+|||+++++++|+++|++||.|..|.|+. .++||||+|.+.++|++||+.+ +..|+|+.|+|.++..
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~----~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP----GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC----CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 57899999999999999999999999999987753 4679999999999999999863 7889999999998754
No 44
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.01 E-value=1.2e-09 Score=104.89 Aligned_cols=76 Identities=33% Similarity=0.523 Sum_probs=71.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecc
Q 012564 299 GHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKK 374 (460)
Q Consensus 299 ~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~ 374 (460)
.++|||+||+.++++++|+++|.+||.|..+.|..++.+ .+|||||+|.+.+++..|+..+ +..|.|+.|.|....
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 699999999999999999999999999999999888744 4999999999999999999999 799999999999965
No 45
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.00 E-value=5.5e-11 Score=105.23 Aligned_cols=79 Identities=23% Similarity=0.329 Sum_probs=73.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCC--ceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEE
Q 012564 295 EEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKG--YCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVE 371 (460)
Q Consensus 295 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g--~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~ 371 (460)
...+...|||||||++.||.+|-.+|++||.|..|.++.|+.+| +||||+.|++..+---|+..+ |+.|.||.|+|+
T Consensus 31 ~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 31 EYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred hcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEee
Confidence 46778899999999999999999999999999999999998885 999999999999988899888 999999999998
Q ss_pred ec
Q 012564 372 KK 373 (460)
Q Consensus 372 ~~ 373 (460)
..
T Consensus 111 Hv 112 (219)
T KOG0126|consen 111 HV 112 (219)
T ss_pred ec
Confidence 54
No 46
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.00 E-value=3.2e-10 Score=105.88 Aligned_cols=84 Identities=32% Similarity=0.494 Sum_probs=79.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEE
Q 012564 294 HEEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFV 370 (460)
Q Consensus 294 ~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V 370 (460)
.+-++++.|||=.||.+..+.+|...|-.||.|.+.+|.+|+.+ .|||+||.|+++.++++||.+| |+.|+-++|+|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 34678999999999999999999999999999999999999877 5999999999999999999999 99999999999
Q ss_pred EecccCC
Q 012564 371 EKKKKTR 377 (460)
Q Consensus 371 ~~~~~~~ 377 (460)
..+||+.
T Consensus 360 QLKRPkd 366 (371)
T KOG0146|consen 360 QLKRPKD 366 (371)
T ss_pred hhcCccc
Confidence 9999874
No 47
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.98 E-value=3.2e-09 Score=98.94 Aligned_cols=81 Identities=17% Similarity=0.336 Sum_probs=75.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCC--ceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEe
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKG--YCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEK 372 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g--~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~ 372 (460)
+...+.|.|.-||.++|+++||.+|+..|+|.+|+++.|+.+| -||+||.|.++++|++||..+ ++.|..+.|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 4445779999999999999999999999999999999999885 899999999999999999999 9999999999999
Q ss_pred cccC
Q 012564 373 KKKT 376 (460)
Q Consensus 373 ~~~~ 376 (460)
+||.
T Consensus 118 ARPS 121 (360)
T KOG0145|consen 118 ARPS 121 (360)
T ss_pred ccCC
Confidence 9987
No 48
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.95 E-value=8.6e-10 Score=97.90 Aligned_cols=78 Identities=24% Similarity=0.347 Sum_probs=72.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
....+|||+||+..++++.|.++|-+.|+|..+.|..++.+ .+|||||+|.++++|+-|++-+ .+.|-||.|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 45689999999999999999999999999999999888766 4999999999999999999999 88999999999988
Q ss_pred c
Q 012564 374 K 374 (460)
Q Consensus 374 ~ 374 (460)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 7
No 49
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.94 E-value=4.2e-09 Score=104.50 Aligned_cols=84 Identities=18% Similarity=0.262 Sum_probs=71.7
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC--CCCCC--C
Q 012564 292 NAHEEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS--PITIG--G 365 (460)
Q Consensus 292 ~~~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~--~~~i~--g 365 (460)
....+.+..+|||+.||..++|.+|+++|++||.|..|.|+.|+.+ .+|||||.|.+.++|.+|+.++ -++|- .
T Consensus 27 ~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~ 106 (510)
T KOG0144|consen 27 TDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMH 106 (510)
T ss_pred CCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCC
Confidence 3445677899999999999999999999999999999999998887 4999999999999999999998 44553 3
Q ss_pred eEEEEEeccc
Q 012564 366 QEAFVEKKKK 375 (460)
Q Consensus 366 r~i~V~~~~~ 375 (460)
+.|.|.++..
T Consensus 107 ~pvqvk~Ad~ 116 (510)
T KOG0144|consen 107 HPVQVKYADG 116 (510)
T ss_pred cceeecccch
Confidence 5677776653
No 50
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.93 E-value=2.1e-09 Score=110.26 Aligned_cols=77 Identities=23% Similarity=0.371 Sum_probs=73.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCC--ceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecccC
Q 012564 300 HSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKG--YCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKKKT 376 (460)
Q Consensus 300 ~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g--~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~~~ 376 (460)
+.|||||+|+++++++|.++|+..|.|.+++++.|+.+| +|||||+|.+.+.+..|++.+ +.+++||+|+|+++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 899999999999999999999999999999999999885 999999999999999999999 99999999999998754
No 51
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.93 E-value=2.7e-09 Score=108.55 Aligned_cols=82 Identities=28% Similarity=0.416 Sum_probs=73.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC------C-CCCCC
Q 012564 295 EEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS------P-ITIGG 365 (460)
Q Consensus 295 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~------~-~~i~g 365 (460)
....+.+|||+|||+++|+++|.++|++||.|+++.|+++..+ .+|.|||.|.+..++++||++. + +.|.|
T Consensus 288 n~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~G 367 (678)
T KOG0127|consen 288 NITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDG 367 (678)
T ss_pred cccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEec
Confidence 3456799999999999999999999999999999999999888 4899999999999999999876 3 66799
Q ss_pred eEEEEEecccC
Q 012564 366 QEAFVEKKKKT 376 (460)
Q Consensus 366 r~i~V~~~~~~ 376 (460)
|.|+|..+-++
T Consensus 368 R~Lkv~~Av~R 378 (678)
T KOG0127|consen 368 RLLKVTLAVTR 378 (678)
T ss_pred cEEeeeeccch
Confidence 99999877654
No 52
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=4.5e-09 Score=98.62 Aligned_cols=78 Identities=21% Similarity=0.350 Sum_probs=73.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEeccc
Q 012564 299 GHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKKK 375 (460)
Q Consensus 299 ~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~~ 375 (460)
...+||+.|...++-++||+.|.+||+|.+++|+.|.++ +|||+||.|-+.++|++||..| |.-|++|.|+-.++..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 578999999999999999999999999999999999887 5999999999999999999999 9999999999998865
Q ss_pred C
Q 012564 376 T 376 (460)
Q Consensus 376 ~ 376 (460)
+
T Consensus 142 K 142 (321)
T KOG0148|consen 142 K 142 (321)
T ss_pred C
Confidence 4
No 53
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.87 E-value=1.9e-09 Score=106.84 Aligned_cols=82 Identities=22% Similarity=0.288 Sum_probs=73.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHC--CCCCCC--eEEEEE
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQAS--PITIGG--QEAFVE 371 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~--~~~i~g--r~i~V~ 371 (460)
.+.++|||+-|+..+||.+|+++|++||.|++|.|+++..+ .+|||||.|.+.+-|..||+++ -.++.| ..|.|.
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 56799999999999999999999999999999999988777 7999999999999999999999 445655 569999
Q ss_pred ecccCCC
Q 012564 372 KKKKTRV 378 (460)
Q Consensus 372 ~~~~~~~ 378 (460)
++.+.+.
T Consensus 202 FADtqkd 208 (510)
T KOG0144|consen 202 FADTQKD 208 (510)
T ss_pred ecccCCC
Confidence 9987743
No 54
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.86 E-value=7.9e-09 Score=103.03 Aligned_cols=78 Identities=18% Similarity=0.251 Sum_probs=70.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCC-CCeEEEEEe
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITI-GGQEAFVEK 372 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i-~gr~i~V~~ 372 (460)
..++-||||.||.++.|++|..+|++.|+|-.++|+++..+ ++|||||+|-+.+.|++||+.+ +++| .|+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 35789999999999999999999999999999999999766 5999999999999999999999 8888 688887765
Q ss_pred cc
Q 012564 373 KK 374 (460)
Q Consensus 373 ~~ 374 (460)
.-
T Consensus 161 Sv 162 (506)
T KOG0117|consen 161 SV 162 (506)
T ss_pred ee
Confidence 43
No 55
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.86 E-value=2.5e-09 Score=101.24 Aligned_cols=71 Identities=28% Similarity=0.460 Sum_probs=65.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecccC
Q 012564 300 HSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKKKT 376 (460)
Q Consensus 300 ~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~~~ 376 (460)
.+|||+|||.++++.+|+.+|++||+|..|+|+ |.||||..++...+..||..| +.+|+|..|+|+.++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee------cccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 479999999999999999999999999999983 568999999999999999999 99999999999987755
No 56
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=4.3e-09 Score=101.93 Aligned_cols=79 Identities=19% Similarity=0.370 Sum_probs=73.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCC--ceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecc
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKG--YCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKK 374 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g--~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~ 374 (460)
+...|||.-|.+-+++++|+-+|+.||+|..|.|+.+..+| .+||||+|++.+++++|.-+| +..|++++|.|++..
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 45789999999999999999999999999999999998885 899999999999999999999 999999999999876
Q ss_pred cC
Q 012564 375 KT 376 (460)
Q Consensus 375 ~~ 376 (460)
.-
T Consensus 318 SV 319 (479)
T KOG0415|consen 318 SV 319 (479)
T ss_pred hh
Confidence 43
No 57
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.84 E-value=2.2e-09 Score=104.16 Aligned_cols=73 Identities=19% Similarity=0.363 Sum_probs=69.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEE
Q 012564 299 GHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVE 371 (460)
Q Consensus 299 ~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~ 371 (460)
-++||||.+.+++.|+.||..|..||+|+++.+.+|..+ .++|+||+|+-++.|+-|++.| +.+++||.|+|.
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg 188 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 188 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCcccccc
Confidence 488999999999999999999999999999999999877 4999999999999999999999 999999999987
No 58
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.83 E-value=7.6e-09 Score=105.32 Aligned_cols=78 Identities=24% Similarity=0.339 Sum_probs=71.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCC-ceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecccC
Q 012564 299 GHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKG-YCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKKKT 376 (460)
Q Consensus 299 ~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g-~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~~~ 376 (460)
-.+|.|+||||.+...+|+.+|++||.|..+.|......+ .|||||.|.+..+|.+||+.+ +.+|+||.|-|+|+-++
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 6889999999999999999999999999998887554443 799999999999999999999 99999999999999765
No 59
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.78 E-value=3.6e-08 Score=100.61 Aligned_cols=81 Identities=25% Similarity=0.462 Sum_probs=73.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC-C-ceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEe
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK-G-YCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEK 372 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~-g-~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~ 372 (460)
..-++.|||.+|...+...+|+.||++||+|.-.+|+....+ | +||+||++.+.++|.+||+.| ..+|.|+.|.|+.
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 455788999999999999999999999999998888776655 4 999999999999999999999 9999999999998
Q ss_pred cccC
Q 012564 373 KKKT 376 (460)
Q Consensus 373 ~~~~ 376 (460)
++..
T Consensus 482 aKNE 485 (940)
T KOG4661|consen 482 AKNE 485 (940)
T ss_pred cccC
Confidence 8754
No 60
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.76 E-value=1.7e-08 Score=74.27 Aligned_cols=55 Identities=35% Similarity=0.377 Sum_probs=46.6
Q ss_pred HHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 316 LEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 316 L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
|+++|++||.|..+.+.. ++ +++|||+|.+.++|++|++.+ +..++|+.|+|+++
T Consensus 1 L~~~f~~fG~V~~i~~~~--~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFK--KK-RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEET--TS-TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEe--CC-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 689999999999866522 22 589999999999999999988 99999999999874
No 61
>smart00361 RRM_1 RNA recognition motif.
Probab=98.75 E-value=3.4e-08 Score=76.22 Aligned_cols=58 Identities=21% Similarity=0.212 Sum_probs=50.9
Q ss_pred HHHHHHHhh----cCCCeeEEE-EEEeCCC----CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEE
Q 012564 313 VASLEVEFK----KFGPVKQGG-IQVRHNK----GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFV 370 (460)
Q Consensus 313 e~~L~~~F~----~~G~v~~~~-i~~~~~~----g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V 370 (460)
+++|+++|+ +||.|.++. |.+++.+ .+||+||+|.+.++|.+|+..| +..++|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578899998 999999985 6666533 4999999999999999999999 99999999876
No 62
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.73 E-value=2.5e-08 Score=96.72 Aligned_cols=77 Identities=19% Similarity=0.328 Sum_probs=68.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC--CCCCCCeEEEEEe
Q 012564 295 EEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS--PITIGGQEAFVEK 372 (460)
Q Consensus 295 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~--~~~i~gr~i~V~~ 372 (460)
++...++|||++|-..+++.+|+++|.+||.|+.+.+.. ++++|||+|.+.++|+.|.+++ .+.|+|++|+|.+
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~----~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP----RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec----ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 355679999999999999999999999999999987743 3568999999999999999988 6778999999999
Q ss_pred ccc
Q 012564 373 KKK 375 (460)
Q Consensus 373 ~~~ 375 (460)
.++
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 987
No 63
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=3.2e-08 Score=100.61 Aligned_cols=74 Identities=24% Similarity=0.465 Sum_probs=69.7
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecccC
Q 012564 302 IYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKKKT 376 (460)
Q Consensus 302 lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~~~ 376 (460)
|||+||+.+++..+|.++|+.||.|.+|+|..+.+..+|| ||+|+++++|++||..+ +..+.++.|.|.....+
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERK 153 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccch
Confidence 9999999999999999999999999999999998888999 99999999999999999 88999999999876544
No 64
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.70 E-value=1.6e-08 Score=103.33 Aligned_cols=77 Identities=19% Similarity=0.316 Sum_probs=70.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEeccc
Q 012564 299 GHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKKK 375 (460)
Q Consensus 299 ~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~~ 375 (460)
...|||+||.+++++++|+.+|+.||.|..|.+.++..+ .+||+||+|.+.+.|++|++.+ +++|-|+.|+|.....
T Consensus 278 ~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 278 MRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred hhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 344999999999999999999999999999999888756 4999999999999999999999 9999999999986553
No 65
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.69 E-value=4e-08 Score=104.81 Aligned_cols=75 Identities=17% Similarity=0.278 Sum_probs=60.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcC------------CCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHCCCC
Q 012564 295 EEVEGHSIYIRNLPDTMTVASLEVEFKKF------------GPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQASPIT 362 (460)
Q Consensus 295 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~------------G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~~~~ 362 (460)
.....++|||+|||+.+|+++|+++|.+| +.|..+.+ .+.++||||+|.+.++|..||...++.
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~----~~~kg~afVeF~~~e~A~~Al~l~g~~ 246 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI----NKEKNFAFLEFRTVEEATFAMALDSII 246 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE----CCCCCEEEEEeCCHHHHhhhhcCCCeE
Confidence 34567899999999999999999999875 23333332 335789999999999999999644999
Q ss_pred CCCeEEEEEec
Q 012564 363 IGGQEAFVEKK 373 (460)
Q Consensus 363 i~gr~i~V~~~ 373 (460)
|.|+.|+|...
T Consensus 247 ~~g~~l~v~r~ 257 (509)
T TIGR01642 247 YSNVFLKIRRP 257 (509)
T ss_pred eeCceeEecCc
Confidence 99999998643
No 66
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.66 E-value=2.3e-08 Score=98.53 Aligned_cols=79 Identities=24% Similarity=0.357 Sum_probs=73.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEEeccc
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEKKKK 375 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~~~~~ 375 (460)
+.++|||++|+|+++++.|++.|.+||+|..|.|+.+..+ .++|+||+|++.+.+.++|....+.|+|+.|.+..+-+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 6799999999999999999999999999999999998877 48999999999999999999889999999999888776
Q ss_pred C
Q 012564 376 T 376 (460)
Q Consensus 376 ~ 376 (460)
+
T Consensus 85 r 85 (311)
T KOG4205|consen 85 R 85 (311)
T ss_pred c
Confidence 5
No 67
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.65 E-value=1.3e-07 Score=88.38 Aligned_cols=79 Identities=23% Similarity=0.252 Sum_probs=73.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
..++.|||=||..+.+|.-|-++|..||.|..++|+.|-++ -|||+||...+-++|..||..+ +..+++|.|.|.++
T Consensus 276 ~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 276 GGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred CCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 34799999999999999999999999999999999999876 4899999999999999999999 99999999999987
Q ss_pred cc
Q 012564 374 KK 375 (460)
Q Consensus 374 ~~ 375 (460)
..
T Consensus 356 tn 357 (360)
T KOG0145|consen 356 TN 357 (360)
T ss_pred cC
Confidence 64
No 68
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.64 E-value=1.7e-07 Score=92.32 Aligned_cols=79 Identities=25% Similarity=0.368 Sum_probs=74.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEEeccc
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEKKKK 375 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~~~~~ 375 (460)
...+|||++|+.++++++|++.|.+||.|..+.|+++..+ .++|+||.|.+.+++++++...-+.|+++.+.|..+.|
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccc
Confidence 5689999999999999999999999999999999999887 49999999999999999998889999999999999988
Q ss_pred C
Q 012564 376 T 376 (460)
Q Consensus 376 ~ 376 (460)
+
T Consensus 176 k 176 (311)
T KOG4205|consen 176 K 176 (311)
T ss_pred h
Confidence 7
No 69
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.60 E-value=8.7e-08 Score=90.95 Aligned_cols=74 Identities=23% Similarity=0.370 Sum_probs=67.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEeccc
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKKK 375 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~~ 375 (460)
...++|+|+||.+.++.++|+..|.+||+|..|+| -+.|+||.|+-.++|..||+.| +.+|.|++++|.....
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdi------vkdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDI------VKDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeee------ecceeEEEEeeccchHHHHhcccccccccceeeeeeecc
Confidence 34689999999999999999999999999999988 3579999999999999999999 9999999999998876
Q ss_pred C
Q 012564 376 T 376 (460)
Q Consensus 376 ~ 376 (460)
+
T Consensus 150 r 150 (346)
T KOG0109|consen 150 R 150 (346)
T ss_pred c
Confidence 5
No 70
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.52 E-value=1.6e-07 Score=83.64 Aligned_cols=77 Identities=22% Similarity=0.278 Sum_probs=68.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeeEE-EEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecc
Q 012564 299 GHSIYIRNLPDTMTVASLEVEFKKFGPVKQG-GIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKK 374 (460)
Q Consensus 299 ~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~-~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~ 374 (460)
+..|||+||.+.+++..|.+.|+.||.|... +|+.+.++ .++|+||.|.+.+.+.+||..+ +..++.++|+|+.+.
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~ 175 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAF 175 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEE
Confidence 4889999999999999999999999988653 56666665 4889999999999999999999 999999999999887
Q ss_pred c
Q 012564 375 K 375 (460)
Q Consensus 375 ~ 375 (460)
.
T Consensus 176 k 176 (203)
T KOG0131|consen 176 K 176 (203)
T ss_pred e
Confidence 4
No 71
>cd00531 NTF2_like Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea
Probab=98.49 E-value=2.2e-06 Score=71.65 Aligned_cols=115 Identities=25% Similarity=0.398 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcCCC--CcceEEEeeeeeeeeCC-CcEE
Q 012564 16 NAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLDY--KNYKAEIKTADAQNSHK-EGVT 91 (460)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l~~--~~~~~~i~s~d~q~s~~-~gil 91 (460)
..|+.+||..|+ .+++.|..||.+++.+.+.+.+.......|.++|.+.+..+.. ....|.+.+++++...+ ...+
T Consensus 2 ~~l~~~y~~~ld~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~ 81 (124)
T cd00531 2 EQFLYRYARLLDAGDREWLALLYADDAYFEPPGGDGLIYPDDGREAIEDRVRRLPFGPSRTRHLVSNVDVQPGDDGEGVV 81 (124)
T ss_pred HHHHHHHHHHhCCchHHHHHhhCcCcEEEEEccCCEEEEcCChHHHHHHHHHhcCCCCCceEEEEEeEEEEeCCCCEEEE
Confidence 579999999999 8889999999999999887642122366799999999998763 33455578899888654 3466
Q ss_pred EEEEEEEEcCC---CCcccEEEeeeeeecCCcEEEEccEEEE
Q 012564 92 VLVTGCLTGKD---NLRRKFAQSFFLAPQDNGYFVLNDVFRY 130 (460)
Q Consensus 92 i~V~G~~~~~~---~~~~~F~q~F~L~~~~~~y~v~nDifr~ 130 (460)
+.+.+.+.... ...+.|.++|.+...+++|.|.+.+++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~w~i~~~~~~~ 123 (124)
T cd00531 82 VSVFGVLRTRGDGEQDVFAGGQTFVLRPQGGGGKIANRRFRL 123 (124)
T ss_pred EEEEEEEEEccCCceeEEEEEEEEEEEEeCCEEEEEEEEEec
Confidence 77777877665 4457899999999999999999999976
No 72
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.48 E-value=6.3e-07 Score=85.19 Aligned_cols=85 Identities=24% Similarity=0.357 Sum_probs=76.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEEe
Q 012564 295 EEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEK 372 (460)
Q Consensus 295 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~~ 372 (460)
.+.+...+||+|+.+.++.++++.+|+.||.|..+.|..++.. .++|+||+|.+.+.++.+|...+..|.++.|.|..
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTL 176 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeee
Confidence 4567899999999999999999999999999998889888877 49999999999999999999449999999999999
Q ss_pred cccCCCC
Q 012564 373 KKKTRVG 379 (460)
Q Consensus 373 ~~~~~~g 379 (460)
++.+..+
T Consensus 177 ~r~~~pg 183 (231)
T KOG4209|consen 177 KRTNVPG 183 (231)
T ss_pred eeeecCC
Confidence 9876433
No 73
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.47 E-value=2.9e-07 Score=91.64 Aligned_cols=75 Identities=27% Similarity=0.337 Sum_probs=65.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEe
Q 012564 295 EEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEK 372 (460)
Q Consensus 295 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~ 372 (460)
.....++|||+|||+++|+..|++-|..||.|++.+| +.+ ++.-+.|.|.++++|+.|+..| +..|+||.|+|.+
T Consensus 532 aarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadi-me~--GkskGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADI-MEN--GKSKGVVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred ccccccEEEEecCCccccHHHHHHHHHhccceehhhh-hcc--CCccceEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 4556789999999999999999999999999999888 333 3333499999999999999999 9999999999976
No 74
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.47 E-value=3.3e-07 Score=97.03 Aligned_cols=75 Identities=12% Similarity=0.243 Sum_probs=68.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecccC
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKKKT 376 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~~~ 376 (460)
-.++||||.|+.++++.+|..+|+.||.|.+|.+ ...++||||......+|.+||.+| .+.+.++.|+|.|+...
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~l----i~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIIL----IPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEee----ccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 4589999999999999999999999999999766 445788999999999999999999 99999999999988654
No 75
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.44 E-value=4e-07 Score=95.78 Aligned_cols=75 Identities=27% Similarity=0.401 Sum_probs=67.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC-----CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 300 HSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK-----GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 300 ~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~-----g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
++|||.||+++++.+.|+.+|.+.|.|..+.|...++. ..|||||+|.+.++|++|+..| +..|+|+.|.|...
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 44999999999999999999999999999877665543 3599999999999999999999 89999999999988
Q ss_pred c
Q 012564 374 K 374 (460)
Q Consensus 374 ~ 374 (460)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 7
No 76
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.44 E-value=6e-07 Score=82.86 Aligned_cols=76 Identities=21% Similarity=0.322 Sum_probs=66.1
Q ss_pred cEEEEcCCCCCCCHHHHHH----HhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecc
Q 012564 300 HSIYIRNLPDTMTVASLEV----EFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKK 374 (460)
Q Consensus 300 ~~lfV~nLp~~vte~~L~~----~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~ 374 (460)
.+|||.||...+..++|+. +|++||.|.+|.. +...+-+|-|||.|.+.+.|-.|+.++ |.-+-|+.++|.+++
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a-~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~ 88 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISA-FKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAK 88 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEe-cCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheeccc
Confidence 4999999999999999888 9999999987533 222224889999999999999999999 999999999999998
Q ss_pred cC
Q 012564 375 KT 376 (460)
Q Consensus 375 ~~ 376 (460)
..
T Consensus 89 s~ 90 (221)
T KOG4206|consen 89 SD 90 (221)
T ss_pred Cc
Confidence 65
No 77
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.42 E-value=2.1e-07 Score=97.81 Aligned_cols=79 Identities=28% Similarity=0.419 Sum_probs=71.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
...++|+|+|||+..+-.+|+.+|..||.|++|+|.....+ ++|||||+|-++.+|.+|+.++ ...|-||.|.++++
T Consensus 611 k~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA 690 (725)
T KOG0110|consen 611 KKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWA 690 (725)
T ss_pred cccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehh
Confidence 34789999999999999999999999999999998776444 5999999999999999999999 78889999999998
Q ss_pred cc
Q 012564 374 KK 375 (460)
Q Consensus 374 ~~ 375 (460)
..
T Consensus 691 ~~ 692 (725)
T KOG0110|consen 691 KS 692 (725)
T ss_pred cc
Confidence 74
No 78
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.38 E-value=4.4e-06 Score=79.43 Aligned_cols=81 Identities=19% Similarity=0.297 Sum_probs=72.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
+...++|+|.||++.|++++|+++|..||.++.+-|.++... ..|.|-|.|...++|.+|++.+ ++.++|+.++++..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 344588999999999999999999999999998888777766 5788999999999999999999 99999999999987
Q ss_pred ccC
Q 012564 374 KKT 376 (460)
Q Consensus 374 ~~~ 376 (460)
.+.
T Consensus 160 ~~~ 162 (243)
T KOG0533|consen 160 SSP 162 (243)
T ss_pred cCc
Confidence 654
No 79
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.38 E-value=6.8e-07 Score=87.17 Aligned_cols=80 Identities=20% Similarity=0.329 Sum_probs=71.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEe
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEK 372 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~ 372 (460)
...-.+|||..+..+.++++|+.+|+.||+|++|.+-..... .+||+||+|.+..+...||..| -+.|+|+-|+|..
T Consensus 207 Ak~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk 286 (544)
T KOG0124|consen 207 AKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGK 286 (544)
T ss_pred HHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccc
Confidence 445689999999999999999999999999999998766554 4999999999999999999999 7789999999986
Q ss_pred ccc
Q 012564 373 KKK 375 (460)
Q Consensus 373 ~~~ 375 (460)
.-.
T Consensus 287 ~vT 289 (544)
T KOG0124|consen 287 CVT 289 (544)
T ss_pred ccC
Confidence 643
No 80
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.28 E-value=9.3e-07 Score=82.25 Aligned_cols=71 Identities=27% Similarity=0.483 Sum_probs=63.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecccC
Q 012564 300 HSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKKKT 376 (460)
Q Consensus 300 ~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~~~ 376 (460)
..+||++|++.+.+.+|+.+|..||.|..+.+ ..+|+||+|++.-+|..|+..+ +..|.+..+.|++++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m------k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM------KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee------ecccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 46899999999999999999999999988765 3578999999999999999999 88888888889988864
No 81
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.27 E-value=1.8e-06 Score=81.18 Aligned_cols=80 Identities=18% Similarity=0.265 Sum_probs=67.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHC-C-CCCCC--eEEEEE
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQAS-P-ITIGG--QEAFVE 371 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~-~-~~i~g--r~i~V~ 371 (460)
.+.++||||-|...-+|+|++.+|..||.|..|.+....+. .|||+||.|.+..+|+.||..+ + .++-| ..|.|.
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 36799999999999999999999999999999987665554 5999999999999999999999 3 34543 458888
Q ss_pred ecccC
Q 012564 372 KKKKT 376 (460)
Q Consensus 372 ~~~~~ 376 (460)
++...
T Consensus 97 ~ADTd 101 (371)
T KOG0146|consen 97 FADTD 101 (371)
T ss_pred eccch
Confidence 87654
No 82
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.26 E-value=2.4e-06 Score=77.76 Aligned_cols=81 Identities=16% Similarity=0.230 Sum_probs=67.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcC-CCeeEEEEEEeCCCC--ceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEE
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKF-GPVKQGGIQVRHNKG--YCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVE 371 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~-G~v~~~~i~~~~~~g--~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~ 371 (460)
.....-+||..+|..+.+.+|..+|.+| |.|..+++...+.+| +|||||+|++.+.|+-|-+.| +..|+++.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3445678999999999999999999988 677765554444444 999999999999999999999 888999999988
Q ss_pred ecccC
Q 012564 372 KKKKT 376 (460)
Q Consensus 372 ~~~~~ 376 (460)
+-.|.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 76654
No 83
>PF10429 Mtr2: Nuclear pore RNA shuttling protein Mtr2; InterPro: IPR019488 Mtr2 is a monomeric, dual-action, RNA-shuttle protein found in yeasts. Transport across the nuclear-cytoplasmic membrane is via the macro-molecular membrane-spanning nuclear pore complex, NPC. The pore is lined by a subset of NPC members called nucleoporins that present FG (Phe-Gly) receptors, characteristically GLFG and FXFG motifs, for shuttling RNAs and proteins. RNA cargo is bound to soluble transport proteins (nuclear export factors) such as Mex67 in yeasts, and TAP in metazoa, which pass along the pore by binding to successive FG receptors. Mtr2 when bound to Mex67 maximises this FG-binding. Mtr2 also acts independently of Mex67 in transporting the large ribosomal RNA subunit through the pore []. ; PDB: 1Q40_A 1Q42_A 1OF5_B.
Probab=98.25 E-value=2.5e-06 Score=75.08 Aligned_cols=98 Identities=10% Similarity=0.095 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHhc-----cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcCCCCcceEEEeeeeeeeeCC-
Q 012564 14 VGNAFVEQYYHILH-----STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLDYKNYKAEIKTADAQNSHK- 87 (460)
Q Consensus 14 vg~~Fv~~YY~~l~-----~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~s~d~q~s~~- 87 (460)
+..-||+.||..|+ +-...|..||..+|.++|+|. .+.+..+..+++.+++. ..+|.+.++||+...+
T Consensus 6 ~~E~FvKk~la~LD~~~~~~l~~~l~~F~~~~~~II~Ng~-----Pi~~~~~F~~~w~~~pv-~TqH~L~s~D~H~IPGs 79 (166)
T PF10429_consen 6 IIETFVKKILAHLDEQDPPNLNSFLTQFLPPNCKIIWNGT-----PIAQPTAFQQTWQQQPV-QTQHQLTSFDCHVIPGS 79 (166)
T ss_dssp CHHHHHHHHHHHHCT-SS--HHHHHTTCECCEEEEEETTE-----EES-HHHHHHHHHCCS---EEEEEEEEEEEEETTT
T ss_pred hHHHHHHHHHHHhcCcchHHHHHHhHhhcCCCcEEEECCc-----cCCCHHHHHHHHHhCcc-ceeeeeeeeeeeEeCCC
Confidence 56789999999999 456688999999999999998 89999999999999983 2499999999999974
Q ss_pred CcEEEEEEEEEEcCCCCcccEEEeeeeeec
Q 012564 88 EGVTVLVTGCLTGKDNLRRKFAQSFFLAPQ 117 (460)
Q Consensus 88 ~gili~V~G~~~~~~~~~~~F~q~F~L~~~ 117 (460)
|.++|.|++.|..++.-+-|--|...|...
T Consensus 80 gt~i~N~n~KVRFDEsGrdk~G~~a~l~~~ 109 (166)
T PF10429_consen 80 GTFIINVNCKVRFDESGRDKLGEDADLPQP 109 (166)
T ss_dssp TEEEEEEEEEEEEB-SSB-TTS-B--TTS-
T ss_pred CeEEEeeeEEEEecCCCCCCCCCceeeccc
Confidence 569999999999977666667777877654
No 84
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.17 E-value=5.6e-06 Score=80.61 Aligned_cols=80 Identities=20% Similarity=0.190 Sum_probs=67.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeE--------EEEEEeCCC-CceEEEEEEcCHHHHHHHHHHC-CCCCCCe
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQ--------GGIQVRHNK-GYCFGFVEFQSSSSVDNAIQAS-PITIGGQ 366 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~--------~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr 366 (460)
...+.|||.|||.++|.+++.++|++||-|.+ |+|..+... -+|=|.|.|...+++.-||+.| ...|.|+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 45678999999999999999999999998765 344444333 2888999999999999999999 9999999
Q ss_pred EEEEEecccC
Q 012564 367 EAFVEKKKKT 376 (460)
Q Consensus 367 ~i~V~~~~~~ 376 (460)
.|+|+.++-.
T Consensus 212 ~~rVerAkfq 221 (382)
T KOG1548|consen 212 KLRVERAKFQ 221 (382)
T ss_pred EEEEehhhhh
Confidence 9999988744
No 85
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.15 E-value=3e-05 Score=71.36 Aligned_cols=81 Identities=15% Similarity=0.229 Sum_probs=65.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCC---ceEEEEEEcCHHHHHHHHHHC-CCCCC---CeEEE
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKG---YCFGFVEFQSSSSVDNAIQAS-PITIG---GQEAF 369 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g---~g~aFV~F~~~e~a~~Al~~~-~~~i~---gr~i~ 369 (460)
...++|||.+||.++...+|..+|..|---..+.|......+ +-+|||+|.+...|.+|++++ |+.|+ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 346999999999999999999999988655554443322221 578999999999999999999 88884 67899
Q ss_pred EEecccCC
Q 012564 370 VEKKKKTR 377 (460)
Q Consensus 370 V~~~~~~~ 377 (460)
|+.++.+.
T Consensus 112 iElAKSNt 119 (284)
T KOG1457|consen 112 IELAKSNT 119 (284)
T ss_pred eeehhcCc
Confidence 99999773
No 86
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.14 E-value=6.6e-06 Score=86.58 Aligned_cols=83 Identities=20% Similarity=0.290 Sum_probs=74.0
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC-----CceEEEEEEcCHHHHHHHHHHC-CCCCCCe
Q 012564 293 AHEEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK-----GYCFGFVEFQSSSSVDNAIQAS-PITIGGQ 366 (460)
Q Consensus 293 ~~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~-----g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr 366 (460)
...++..+.|||+||++.++++.|...|..||+|..++|++-+.- .+.|+||-|.+..++++|++.| ++.+.+.
T Consensus 168 DdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~ 247 (877)
T KOG0151|consen 168 DDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY 247 (877)
T ss_pred CCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeee
Confidence 345788899999999999999999999999999999999876533 4778999999999999999999 9999999
Q ss_pred EEEEEeccc
Q 012564 367 EAFVEKKKK 375 (460)
Q Consensus 367 ~i~V~~~~~ 375 (460)
.+++-+.++
T Consensus 248 e~K~gWgk~ 256 (877)
T KOG0151|consen 248 EMKLGWGKA 256 (877)
T ss_pred eeeeccccc
Confidence 999988853
No 87
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.11 E-value=3.6e-05 Score=78.31 Aligned_cols=76 Identities=20% Similarity=0.163 Sum_probs=59.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeeE-EEEEEeCCC-CceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEEecc
Q 012564 299 GHSIYIRNLPDTMTVASLEVEFKKFGPVKQ-GGIQVRHNK-GYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEKKK 374 (460)
Q Consensus 299 ~~~lfV~nLp~~vte~~L~~~F~~~G~v~~-~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~~~~ 374 (460)
...|-+++||+.||+++|.++|+-.--|.. +.++++... ..+-|||.|++.+.+++||......|+.|-|.|..+.
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSS 180 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhH
Confidence 467889999999999999999997754444 222333222 3678999999999999999998888898988887553
No 88
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.11 E-value=7.4e-06 Score=83.42 Aligned_cols=72 Identities=19% Similarity=0.281 Sum_probs=65.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEeccc
Q 012564 300 HSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKKK 375 (460)
Q Consensus 300 ~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~~ 375 (460)
.+|||| +++|+.+|.++|+.+|+|.+++|-++. ++-|||||.|.++++|.+||..+ -..|.|+.|+|.+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~r 74 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-TSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQR 74 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-CccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhcc
Confidence 468998 899999999999999999999998888 68999999999999999999999 5677999999988764
No 89
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.10 E-value=1.4e-06 Score=79.70 Aligned_cols=78 Identities=21% Similarity=0.221 Sum_probs=68.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEeccc
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKKK 375 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~~ 375 (460)
..++|||+|+-..++++.|.++|-+-|+|..+.|...++....||||.|.++.++.-|++.+ +..+.++.|.|.....
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 46899999999999999999999999999998886666654449999999999999999999 9999998888876653
No 90
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.89 E-value=3.3e-05 Score=78.66 Aligned_cols=75 Identities=21% Similarity=0.271 Sum_probs=62.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEEec
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEKK 373 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~~~ 373 (460)
...-|-+.+|||++|+++|.++|+.|+ |..+.+..+..+..|-|||+|.+.+++++||++....++.|-|.|-.+
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTA 83 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEcc
Confidence 346678889999999999999999995 777555444344578899999999999999999888888898888765
No 91
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.88 E-value=9.1e-05 Score=72.89 Aligned_cols=82 Identities=15% Similarity=0.180 Sum_probs=68.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeE--------EEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCC
Q 012564 295 EEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQ--------GGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITI 363 (460)
Q Consensus 295 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~--------~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i 363 (460)
.....-+|||-+|+..+++++|.++|.++|.|+. +.|-+++.+ .|+-|.|.|++...|+.||... +..+
T Consensus 62 ~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 62 DKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred cccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 3556788999999999999999999999998865 233344444 3889999999999999999998 9999
Q ss_pred CCeEEEEEecccC
Q 012564 364 GGQEAFVEKKKKT 376 (460)
Q Consensus 364 ~gr~i~V~~~~~~ 376 (460)
.+..|+|..+..+
T Consensus 142 ~gn~ikvs~a~~r 154 (351)
T KOG1995|consen 142 CGNTIKVSLAERR 154 (351)
T ss_pred cCCCchhhhhhhc
Confidence 9999999887654
No 92
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=97.86 E-value=3.8e-05 Score=83.26 Aligned_cols=6 Identities=50% Similarity=1.132 Sum_probs=2.3
Q ss_pred CCCCCC
Q 012564 433 GYPRGR 438 (460)
Q Consensus 433 g~~~~~ 438 (460)
|++|++
T Consensus 1255 Gfgrgg 1260 (1282)
T KOG0921|consen 1255 GFGRGG 1260 (1282)
T ss_pred CcCCCC
Confidence 333333
No 93
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.79 E-value=2.9e-05 Score=72.80 Aligned_cols=79 Identities=18% Similarity=0.307 Sum_probs=68.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEE
Q 012564 294 HEEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFV 370 (460)
Q Consensus 294 ~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V 370 (460)
.-+.+..+||.+.|..+++++.|-..|.+|-.-...+++.++.+ .+||+||.|.+.+++..|+..| |..++.|.|++
T Consensus 185 ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpikl 264 (290)
T KOG0226|consen 185 EWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKL 264 (290)
T ss_pred cCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHh
Confidence 34566799999999999999999999999977666677777766 4999999999999999999999 99999998876
Q ss_pred Ee
Q 012564 371 EK 372 (460)
Q Consensus 371 ~~ 372 (460)
..
T Consensus 265 Rk 266 (290)
T KOG0226|consen 265 RK 266 (290)
T ss_pred hh
Confidence 53
No 94
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.78 E-value=2e-05 Score=81.36 Aligned_cols=71 Identities=21% Similarity=0.316 Sum_probs=61.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEE
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAF 369 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~ 369 (460)
+....+|+|-|||..|++++|+.+|+.||+|+.+.. ... .++..||+|-|..+|++|++++ ..+|.|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~--t~~-~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE--TPN-KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc--ccc-cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 345689999999999999999999999999998432 111 3788999999999999999999 8999998887
No 95
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.77 E-value=6.8e-05 Score=62.58 Aligned_cols=69 Identities=22% Similarity=0.433 Sum_probs=44.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC------CCCCCCeEEEEE
Q 012564 299 GHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS------PITIGGQEAFVE 371 (460)
Q Consensus 299 ~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~------~~~i~gr~i~V~ 371 (460)
+..|+|.+++..++.++|+++|++||.|..|++ ..|...|||.|.+.+.|++|+..+ ++.|.+..+.++
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~----~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDF----SRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE------TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEe----cCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 356889999999999999999999999998776 667677999999999999998876 345677666665
No 96
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.71 E-value=3.4e-05 Score=71.04 Aligned_cols=63 Identities=17% Similarity=0.253 Sum_probs=52.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCC
Q 012564 299 GHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITI 363 (460)
Q Consensus 299 ~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i 363 (460)
..+|||.||..+|+|++|+.+|+.|--...++| +...|-+.||++|++.+.|..||..+ |..|
T Consensus 210 cstlfianl~~~~~ed~l~~~~~~~~gf~~l~~--~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKI--RARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHHHhCCCceEEEE--ecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 468999999999999999999999977665333 33447899999999999999999888 6554
No 97
>PF15008 DUF4518: Domain of unknown function (DUF4518)
Probab=97.53 E-value=0.001 Score=63.92 Aligned_cols=125 Identities=18% Similarity=0.165 Sum_probs=89.4
Q ss_pred CCCHHHHHHHHHHHHHHHhcc--CcchhcccccCCc-eEEeeCCCCc-ceeeccHHHHHHHHhcCCCCcceEE---Eee-
Q 012564 8 PPSAQVVGNAFVEQYYHILHS--TPELVFRFYQDSS-VLSRPDSNGV-MTSVTTMEGINQKILSLDYKNYKAE---IKT- 79 (460)
Q Consensus 8 ~~~~~~vg~~Fv~~YY~~l~~--~p~~l~~fY~~~S-~l~~~~~~~~-~~~~~g~~~I~~~~~~l~~~~~~~~---i~s- 79 (460)
..+...+|..|.++||.+|+. +-=...-|+.|-+ .|.....++. ...+.|.+.+..+|.+|..+..-+- +.+
T Consensus 124 ~~~~~~L~~~F~~WFf~llNs~~~~wgpqhFW~Da~L~~~~~~~~~~~e~~~~Ga~~vs~~Llsl~~e~~l~fnPNl~~~ 203 (262)
T PF15008_consen 124 QYPIHLLAEEFCEWFFELLNSPQDDWGPQHFWPDAKLKLYYSTSEQNVEEYCEGAEEVSLRLLSLVKEERLFFNPNLDSD 203 (262)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccChhhccCCCeEEEEEEcCCCceeEEecCHHHHHHHHHHHhhcccEEECCCCCCC
Confidence 346789999999999999998 4344556776655 3333333334 3344899999999999865533222 334
Q ss_pred -eeeeeeCCCcEEEEEEEEEEcCCCCcccEEEeeeeeecC---CcEEEEccEEEEec
Q 012564 80 -ADAQNSHKEGVTVLVTGCLTGKDNLRRKFAQSFFLAPQD---NGYFVLNDVFRYVD 132 (460)
Q Consensus 80 -~d~q~s~~~gili~V~G~~~~~~~~~~~F~q~F~L~~~~---~~y~v~nDifr~~~ 132 (460)
+.|..+..|-|+|.|.|+|-..+.-.=-|=|.|=|...+ |.|-|.+=-+++..
T Consensus 204 G~k~~~~phGlV~V~v~GTvH~~~~ClGiFEq~FGLiRdP~~~N~WKiK~~~l~i~~ 260 (262)
T PF15008_consen 204 GVKGRISPHGLVLVAVCGTVHRDNTCLGIFEQIFGLIRDPFAENNWKIKFVNLRIRG 260 (262)
T ss_pred CcceEEcCCCcEEEEEeeeEecCCceEeehhhhhhcccCccccCceeEEEEEEEEEe
Confidence 666677778899999999976654455799999999874 68888876666543
No 98
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.46 E-value=0.00012 Score=72.05 Aligned_cols=77 Identities=19% Similarity=0.352 Sum_probs=65.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCC--ceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEEecccC
Q 012564 300 HSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKG--YCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEKKKKT 376 (460)
Q Consensus 300 ~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g--~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~~~~~~ 376 (460)
+.++|+||++.+++++|+.+|..+|.|..+++..+..++ ++|+||+|.+......++......+.++.+.+++..+.
T Consensus 186 ~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 186 TIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred cceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCCCC
Confidence 444499999999999999999999999998887766664 89999999999999988876456788888999988764
No 99
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.40 E-value=0.0014 Score=53.68 Aligned_cols=75 Identities=16% Similarity=0.176 Sum_probs=60.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhc--CCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCC----CeEEEE
Q 012564 300 HSIYIRNLPDTMTVASLEVEFKK--FGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIG----GQEAFV 370 (460)
Q Consensus 300 ~~lfV~nLp~~vte~~L~~~F~~--~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~----gr~i~V 370 (460)
++|-|+|||...|.++|.+++.. .|....+.+.+|..+ ..|||||.|.+++.+.+-.+.. +..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999998853 366666778888655 5999999999999999888777 66663 455667
Q ss_pred Eecc
Q 012564 371 EKKK 374 (460)
Q Consensus 371 ~~~~ 374 (460)
.+|+
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 7665
No 100
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.40 E-value=0.00031 Score=68.64 Aligned_cols=74 Identities=19% Similarity=0.196 Sum_probs=56.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEe--CCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEE
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVR--HNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVE 371 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~--~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~ 371 (460)
..+.+|||||-|++|+++|-+.+...|--...+|.+- +.. .||||.|...+..++++.++.+ ..+|.|+.-.|-
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 4578999999999999999888876663322222222 222 4999999999999999999999 778888765554
No 101
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.18 E-value=0.0018 Score=51.03 Aligned_cols=68 Identities=18% Similarity=0.193 Sum_probs=46.3
Q ss_pred cEEEEcCCCCCCCHH----HHHHHhhcCC-CeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 300 HSIYIRNLPDTMTVA----SLEVEFKKFG-PVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 300 ~~lfV~nLp~~vte~----~L~~~F~~~G-~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
..|||.|||.+.+.. -|++++..|| +|.. | ..+-|+|.|.+.+.|.+|++.| +-.+-|++|.|.+.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~--v------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLS--V------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEE--E------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence 469999999988865 4677777886 4433 2 1356999999999999999999 88899999999987
Q ss_pred cc
Q 012564 374 KK 375 (460)
Q Consensus 374 ~~ 375 (460)
..
T Consensus 75 ~~ 76 (90)
T PF11608_consen 75 PK 76 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 102
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.17 E-value=0.00035 Score=72.83 Aligned_cols=80 Identities=21% Similarity=0.338 Sum_probs=72.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
....+|||++||..+++++++++...||.++...+..+... +++|||.+|-+......|+..+ |+.++++.|.|..+
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 34578999999999999999999999999999988888875 5999999999999999999999 99999999999877
Q ss_pred ccC
Q 012564 374 KKT 376 (460)
Q Consensus 374 ~~~ 376 (460)
...
T Consensus 367 ~~g 369 (500)
T KOG0120|consen 367 IVG 369 (500)
T ss_pred hcc
Confidence 643
No 103
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.04 E-value=0.0054 Score=61.81 Aligned_cols=66 Identities=23% Similarity=0.275 Sum_probs=55.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEe---C--CCC----------ceEEEEEEcCHHHHHHHHHH
Q 012564 294 HEEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVR---H--NKG----------YCFGFVEFQSSSSVDNAIQA 358 (460)
Q Consensus 294 ~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~---~--~~g----------~g~aFV~F~~~e~a~~Al~~ 358 (460)
.++.++++|.+-|||.+-.-+.|.++|+.||.|+.|+|..- . .++ +-+|+|+|+..+.|.+|.+.
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 34678999999999999999999999999999999887543 1 111 55799999999999999988
Q ss_pred C
Q 012564 359 S 359 (460)
Q Consensus 359 ~ 359 (460)
+
T Consensus 306 ~ 306 (484)
T KOG1855|consen 306 L 306 (484)
T ss_pred h
Confidence 7
No 104
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.99 E-value=0.00048 Score=64.33 Aligned_cols=67 Identities=22% Similarity=0.323 Sum_probs=59.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEE
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFV 370 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V 370 (460)
..+.|+|.|+...+.+.+|+++|.++|.+....+ ..+++||+|.+.+++.+||..+ +..|.++.|.+
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhh------hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 4688999999999999999999999999854322 3578999999999999999999 99999999999
No 105
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=96.95 E-value=0.00034 Score=72.27 Aligned_cols=80 Identities=25% Similarity=0.253 Sum_probs=71.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEE
Q 012564 294 HEEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVE 371 (460)
Q Consensus 294 ~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~ 371 (460)
.++.+.+++|+..|...++..+|.++|+.+|+|..|.|+.+++. .+|.+||+|.|.+++..||...|..+.|..|.|.
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq 253 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQ 253 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEec
Confidence 34667799999999999999999999999999999999998887 4999999999999999999777999999998887
Q ss_pred ec
Q 012564 372 KK 373 (460)
Q Consensus 372 ~~ 373 (460)
..
T Consensus 254 ~s 255 (549)
T KOG0147|consen 254 LS 255 (549)
T ss_pred cc
Confidence 43
No 106
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=96.93 E-value=0.003 Score=63.20 Aligned_cols=74 Identities=16% Similarity=0.181 Sum_probs=65.4
Q ss_pred CcEEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEeccc
Q 012564 299 GHSIYIRNLPD-TMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKKK 375 (460)
Q Consensus 299 ~~~lfV~nLp~-~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~~ 375 (460)
...|.|.||.. .+|.+-|-.+|+-||.|.+|+|...+ +-.|.|.+.+...|+-|++.+ ++.|.|+.|+|...+=
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk---kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK---KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC---CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 57888999965 58999999999999999999886654 357999999999999999999 9999999999998763
No 107
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=96.93 E-value=0.0078 Score=65.95 Aligned_cols=72 Identities=11% Similarity=-0.002 Sum_probs=47.6
Q ss_pred cEEEEcCCC--CCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecc
Q 012564 300 HSIYIRNLP--DTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKK 374 (460)
Q Consensus 300 ~~lfV~nLp--~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~ 374 (460)
.++|| |+. ..++..+|-.++..-+.|..-.|-.- .-...|.||+-.. ..+...+..+ ...+.|+.|.|+..+
T Consensus 487 ~~~~~-~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i-~i~~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 487 QLYRI-EVGRDDGVEVRHIVGAIANEGDISSRYIGNI-KLFASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred EEEEE-ecccccCCCHHHHHHHHHhhcCCChhhCCcE-EEeCCceEEEcCh-hhHHHHHHHhccccccCCceEEEECC
Confidence 34555 553 45788888888876666644222000 0024578888765 4477788888 889999999999875
No 108
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B.
Probab=96.86 E-value=0.0085 Score=50.18 Aligned_cols=109 Identities=12% Similarity=0.149 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC--CCCcceEEEeeeeeeeeCCCcEEE
Q 012564 16 NAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL--DYKNYKAEIKTADAQNSHKEGVTV 92 (460)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~i~s~d~q~s~~~gili 92 (460)
..++++|++.+. .+-+.|..+|.++.++...+.+. .+.|.++|.+++... .+..+.+.+..+.++.. ++.+++
T Consensus 2 ~~~~~~~~~a~~~~D~~~~~~~~~~d~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~a~~ 77 (121)
T PF13474_consen 2 EALLEEWIEAFERGDIDALLSLFSDDFVFFGTGPGE---IWRGREAIRAYFERDFESFRPISIEFEDVQVSVS-GDVAVV 77 (121)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHEEEEEEEEETTSSS---EEESHHHHHHHHHHHHHTHSEEEEEEEEEEEEEE-TTEEEE
T ss_pred HHHHHHHHHHHHhCCHHHHHHhhCCCEEEEcCCCCc---eECCHHHHHHHHHHHhhhCceEEEEEEEEEEEEC-CCEEEE
Confidence 367899999988 56699999999888887754321 567999999888752 23567788888888763 444555
Q ss_pred EEEEEEEc--CCCC-cccEEEeeeeeecCCcEEEEccEE
Q 012564 93 LVTGCLTG--KDNL-RRKFAQSFFLAPQDNGYFVLNDVF 128 (460)
Q Consensus 93 ~V~G~~~~--~~~~-~~~F~q~F~L~~~~~~y~v~nDif 128 (460)
.....+.. ++.. ...+..||+|...++.|.|.+.-+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~r~t~v~~k~~~~Wki~h~H~ 116 (121)
T PF13474_consen 78 TGEFRLRFRNDGEEIEMRGRATFVFRKEDGGWKIVHIHW 116 (121)
T ss_dssp EEEEEEEEECTTCEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEecCCccceeeEEEEEEEEEECCEEEEEEEEe
Confidence 55555543 2222 367889999999999999887654
No 109
>TIGR02246 conserved hypothetical protein. This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.
Probab=96.75 E-value=0.026 Score=47.78 Aligned_cols=109 Identities=15% Similarity=0.149 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHhcc-CcchhcccccCCceEE-eeCCCCcceeeccHHHHHHHHhcC---CCCcceEEEeeeeeeeeCCCc
Q 012564 15 GNAFVEQYYHILHS-TPELVFRFYQDSSVLS-RPDSNGVMTSVTTMEGINQKILSL---DYKNYKAEIKTADAQNSHKEG 89 (460)
Q Consensus 15 g~~Fv~~YY~~l~~-~p~~l~~fY~~~S~l~-~~~~~~~~~~~~g~~~I~~~~~~l---~~~~~~~~i~s~d~q~s~~~g 89 (460)
=..++.+|+..|++ +++.|..+|.+++.+. ..+. ...|.++|.+.+..+ .....++++.....+-..++.
T Consensus 6 i~~l~~~~~~a~~~~D~~~~~~~~~~Da~~~~~~g~-----~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 80 (128)
T TIGR02246 6 IRALVATWEAAWAAGDAEGFADLFTPDGVFVTVPGQ-----VWKGREAIAAAHEAFLAGPYKGTRVTIDVIEVRFLGPDL 80 (128)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhhCCCceEECCCCC-----eecCHHHHHHHHHHHhcccCCCcEEEeeeEEEEecCCCE
Confidence 35678899999985 8999999999999886 4443 678999999988753 122234666655555444443
Q ss_pred EEEEEEEEEEcCCCCc----ccEEEeeeeeecCCcEEEEccEE
Q 012564 90 VTVLVTGCLTGKDNLR----RKFAQSFFLAPQDNGYFVLNDVF 128 (460)
Q Consensus 90 ili~V~G~~~~~~~~~----~~F~q~F~L~~~~~~y~v~nDif 128 (460)
.++...-.+...+... ....-+|++...+++|.|..|-+
T Consensus 81 A~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~g~W~I~~~h~ 123 (128)
T TIGR02246 81 AIVHAIQTITAPGKGRARPDAAVRLTFVAVKRDGRWLLAADHN 123 (128)
T ss_pred EEEEEEEEEEcCCCCCCCCCcceEEEEEEEeeCCeEEEEeccC
Confidence 4443333344433221 12344666777888999988755
No 110
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.61 E-value=0.098 Score=52.12 Aligned_cols=70 Identities=29% Similarity=0.186 Sum_probs=56.8
Q ss_pred EcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCC--CCeEEEEEecccC
Q 012564 304 IRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITI--GGQEAFVEKKKKT 376 (460)
Q Consensus 304 V~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i--~gr~i~V~~~~~~ 376 (460)
|-|--+.+|.+-|..+....|+|.+|-|... .+ --|.|||++.+.|++|.++| +..| +=+.|+|++++|.
T Consensus 127 IlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng-VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 127 ILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG-VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPT 199 (494)
T ss_pred eecCccccchhhhhhhcCCCCceEEEEEEec--cc-eeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcc
Confidence 3355567899999999999999998755433 22 34899999999999999999 8777 4468999999986
No 111
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.57 E-value=0.009 Score=56.61 Aligned_cols=57 Identities=19% Similarity=0.302 Sum_probs=44.4
Q ss_pred HHHHHhh-cCCCeeEEEEEEeCCCC---ceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 315 SLEVEFK-KFGPVKQGGIQVRHNKG---YCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 315 ~L~~~F~-~~G~v~~~~i~~~~~~g---~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
+|-..|+ +||+|+.+.| ..+.+ .|.+||.|...++|++|++.+ +-.+.|++|..+..
T Consensus 84 d~f~E~~~kygEiee~~V--c~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNV--CDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHhhhhhhhhh--hcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 3444444 8999988543 22322 788999999999999999999 88999999988754
No 112
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=96.55 E-value=0.015 Score=61.03 Aligned_cols=123 Identities=19% Similarity=0.316 Sum_probs=84.4
Q ss_pred CCCHHHHHHHHHHHHHHHhccCcch-hcccccCCceEEee------C--CC----C------------------cceeec
Q 012564 8 PPSAQVVGNAFVEQYYHILHSTPEL-VFRFYQDSSVLSRP------D--SN----G------------------VMTSVT 56 (460)
Q Consensus 8 ~~~~~~vg~~Fv~~YY~~l~~~p~~-l~~fY~~~S~l~~~------~--~~----~------------------~~~~~~ 56 (460)
.....++-.+|+++||...+.+... |-..|+++|+|+.- . .+ + ...-..
T Consensus 334 ~~~l~~LV~~Fl~~y~~~yD~~d~q~~~~~y~dns~FSlsi~~~~~~s~~~~~~~~~Y~k~SRNi~~l~~~~~r~srl~~ 413 (585)
T KOG3763|consen 334 SEELKQLVLQFLQQYYKIYDNNDGQLLLYAYHDNSTFSLTINFLPVPSHPDPSSLGKYFKDSRNILKLKDPYLRASRLKH 413 (585)
T ss_pred chHHHHHHHHHHHHHHHhhcCchhhhHHhhcCccceeEEEecccCCCCCCchHHHHHHHhhcchhhhhcCHHHHHHhhhc
Confidence 3456678899999999999976664 45557789988531 1 00 0 012345
Q ss_pred cHHHHHHHHhcCCCCcceEEEee--eeeeeeCCCcEEEEEEEEEEcCC----CCccc---EEEeeeeeecCC-cEEEEcc
Q 012564 57 TMEGINQKILSLDYKNYKAEIKT--ADAQNSHKEGVTVLVTGCLTGKD----NLRRK---FAQSFFLAPQDN-GYFVLND 126 (460)
Q Consensus 57 g~~~I~~~~~~l~~~~~~~~i~s--~d~q~s~~~gili~V~G~~~~~~----~~~~~---F~q~F~L~~~~~-~y~v~nD 126 (460)
|..+|...|..||-. +|.+.+ +|.---..+++.+.|.|.+.-.+ ..-++ |+-||++.|-++ +-.|.||
T Consensus 414 g~~~Iv~aLs~LPkT--~Hdl~s~vvDv~~~~~~~l~ftv~G~f~d~~g~~~~s~~~~~~FtRtfvv~P~~ns~l~iv~d 491 (585)
T KOG3763|consen 414 GACDIVVALSALPKT--QHDLDSFVVDVWYQTGNLLGFTVAGVFRDGEGQNSPSNRALLGFTRTFVVTPRENSGLAIVND 491 (585)
T ss_pred cchHHHHHHHhCccc--hhhhhhhheeeeecccceEEEEEEEEeecCCccCCcccccccccceEEEEeeCCCCceEEEec
Confidence 778999999999954 666555 33222234678899999986433 12245 999999999875 8999999
Q ss_pred EEEEec
Q 012564 127 VFRYVD 132 (460)
Q Consensus 127 ifr~~~ 132 (460)
.+-.-+
T Consensus 492 ~Lfi~~ 497 (585)
T KOG3763|consen 492 QLFIAS 497 (585)
T ss_pred eeEEee
Confidence 884433
No 113
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=96.54 E-value=0.0077 Score=56.04 Aligned_cols=74 Identities=22% Similarity=0.244 Sum_probs=60.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCC-CeEEEEEecc
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIG-GQEAFVEKKK 374 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~-gr~i~V~~~~ 374 (460)
....+|+.|||..++.+.|..+|.+|...+.+.++.. ..+.|||+|.+...+..|...+ +..|- ...+.|..++
T Consensus 145 pn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~---~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 145 PNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPP---RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred CceEEEEecCCcchhHHHHHHHHhhCcccceeEeccC---CCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 4688999999999999999999999988887655221 2678999999999988888888 77764 6777776653
No 114
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.53 E-value=0.0065 Score=44.02 Aligned_cols=52 Identities=13% Similarity=0.333 Sum_probs=40.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHH
Q 012564 300 HSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAI 356 (460)
Q Consensus 300 ~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al 356 (460)
+.|-|.+.+.+.. +.+..+|.+||+|..+.+ .....+.||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~----~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYV----PESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEc----CCCCcEEEEEECCHHHHHhhC
Confidence 4577778876544 556669999999998665 233567999999999999985
No 115
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.48 E-value=0.0061 Score=62.88 Aligned_cols=62 Identities=24% Similarity=0.391 Sum_probs=49.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC-----Cce---EEEEEEcCHHHHHHHHHHC
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK-----GYC---FGFVEFQSSSSVDNAIQAS 359 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~-----g~g---~aFV~F~~~e~a~~Al~~~ 359 (460)
.-.++||||+||++++|+.|...|..||.++ ++...+.+. .+| |+|+.|+++.++++-|.+.
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 3458899999999999999999999999975 223221221 166 9999999999999888775
No 116
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=96.40 E-value=0.0022 Score=64.13 Aligned_cols=72 Identities=22% Similarity=0.236 Sum_probs=58.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC---CCCCCCeEEEEEec
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS---PITIGGQEAFVEKK 373 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~---~~~i~gr~i~V~~~ 373 (460)
..+-|.++|||++++|++|-.++..||+|..+.+ .+|+.-||++|.+.++|-..+... .-.+.++.|+|.+.
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~----lkGknQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~s 101 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLM----LKGKNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQYS 101 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeee----eccchhhhhhhcchhhhhheeecccccCccccCcceeehhh
Confidence 5688999999999999999999999999988655 446667999999999887744433 55677888888754
No 117
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.37 E-value=0.0079 Score=58.80 Aligned_cols=79 Identities=10% Similarity=0.219 Sum_probs=60.4
Q ss_pred CCCcEEEEcCCCCCCCHHH------HHHHhhcCCCeeEEEEEEeCCC---CceE--EEEEEcCHHHHHHHHHHC-CCCCC
Q 012564 297 VEGHSIYIRNLPDTMTVAS------LEVEFKKFGPVKQGGIQVRHNK---GYCF--GFVEFQSSSSVDNAIQAS-PITIG 364 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~------L~~~F~~~G~v~~~~i~~~~~~---g~g~--aFV~F~~~e~a~~Al~~~-~~~i~ 364 (460)
.+..-+||-+|+..+-.++ -.++|.+||+|+.+-|...... -.+. .||+|.+.++|.++|... +..++
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 3456789999999887776 2578999999998544332211 1222 499999999999999999 99999
Q ss_pred CeEEEEEeccc
Q 012564 365 GQEAFVEKKKK 375 (460)
Q Consensus 365 gr~i~V~~~~~ 375 (460)
||.|+..+-..
T Consensus 192 Gr~lkatYGTT 202 (480)
T COG5175 192 GRVLKATYGTT 202 (480)
T ss_pred CceEeeecCch
Confidence 99999876654
No 118
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A.
Probab=96.16 E-value=0.069 Score=43.25 Aligned_cols=101 Identities=15% Similarity=0.098 Sum_probs=69.2
Q ss_pred HHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcCCCCcceEEEeeeeeeeeCCCcEEEEEE
Q 012564 17 AFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLDYKNYKAEIKTADAQNSHKEGVTVLVT 95 (460)
Q Consensus 17 ~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~s~d~q~s~~~gili~V~ 95 (460)
+++++|.+.++ .+.+.|..+|.++..+...+. ...|.+++.+.+..-.+....+++..+..+.. ++..++...
T Consensus 3 a~~~~~~~A~~~~D~~~~~~~~~~d~~~~~~~g-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~-gd~a~~~~~ 76 (107)
T PF14534_consen 3 ALEEQYEDAFNAGDIDALASLYADDFVFVGPGG-----TILGKEAILAAFKSGFARFSSIKFEDVEVRVL-GDTAVVRGR 76 (107)
T ss_dssp HHHHHHHHHHHTTHHHHHHTTEEEEEEEEETTS-----EEEEHHHHHHHHHHHCEEEEEEEEEEEEEEEE-TTEEEEEEE
T ss_pred HHHHHHHHHHHhCCHHHHHhhhCCCEEEECCCC-----CEeCHHHHHHHHhhccCCCceEEEEEEEEEEE-CCEEEEEEE
Confidence 56788888877 559999999999988876654 55689999999987444444666777777777 554555555
Q ss_pred EEEEcCCCC---cccEEEeeeeeecCCcEEE
Q 012564 96 GCLTGKDNL---RRKFAQSFFLAPQDNGYFV 123 (460)
Q Consensus 96 G~~~~~~~~---~~~F~q~F~L~~~~~~y~v 123 (460)
..++...+. ...+..+.++..++++|-|
T Consensus 77 ~~~~~~~~g~~~~~~~~~~~v~~k~~g~W~i 107 (107)
T PF14534_consen 77 WTFTWRGDGEPVTIRGRFTSVWKKQDGKWRI 107 (107)
T ss_dssp EEEEETTTTEEEEEEEEEEEEEEEETTEEEE
T ss_pred EEEEEecCCceEEEEEEEEEEEEEeCCEEEC
Confidence 555554322 2345556666666777754
No 119
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.12 E-value=0.015 Score=60.19 Aligned_cols=63 Identities=25% Similarity=0.331 Sum_probs=55.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhh-cCCCeeEEEEEEe-CCC-CceEEEEEEcCHHHHHHHHHHC
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFK-KFGPVKQGGIQVR-HNK-GYCFGFVEFQSSSSVDNAIQAS 359 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~-~~G~v~~~~i~~~-~~~-g~g~aFV~F~~~e~a~~Al~~~ 359 (460)
...++||||+||.-++.++|-.+|. -||.|..+.|-+| +-+ .+|-|-|+|.+..+..+||.+.
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsar 433 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISAR 433 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhh
Confidence 3568999999999999999999997 8999999888666 333 4888999999999999999986
No 120
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.07 E-value=0.013 Score=61.44 Aligned_cols=61 Identities=20% Similarity=0.265 Sum_probs=50.3
Q ss_pred HHHHHHhhcCCCeeEEEEEEe-CCC----CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecc
Q 012564 314 ASLEVEFKKFGPVKQGGIQVR-HNK----GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKK 374 (460)
Q Consensus 314 ~~L~~~F~~~G~v~~~~i~~~-~~~----g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~ 374 (460)
++++..+++||.|+.|.|... ... |.|..||+|.+.+++++|+++| |.++.+|.|...+-.
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 345666789999999888766 222 5777899999999999999999 999999998877653
No 121
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.83 E-value=0.027 Score=60.03 Aligned_cols=73 Identities=16% Similarity=0.154 Sum_probs=59.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCC--ceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEe
Q 012564 300 HSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKG--YCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEK 372 (460)
Q Consensus 300 ~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g--~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~ 372 (460)
+.|-+.|+|++++-+||-++|..|-.+..-.++..++.| .|-+.|-|++.++|.+|...+ +..|..|.|++..
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 378899999999999999999999655433233334444 678899999999999999999 9999999998864
No 122
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.67 E-value=0.045 Score=57.18 Aligned_cols=75 Identities=17% Similarity=0.202 Sum_probs=59.2
Q ss_pred CCCcEEEEcCCCCCCCH------HHHHHHhhcCCCeeEEEEEEeCCCC-ceEEEEEEcCHHHHHHHHHHC-CCCC-CCeE
Q 012564 297 VEGHSIYIRNLPDTMTV------ASLEVEFKKFGPVKQGGIQVRHNKG-YCFGFVEFQSSSSVDNAIQAS-PITI-GGQE 367 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte------~~L~~~F~~~G~v~~~~i~~~~~~g-~g~aFV~F~~~e~a~~Al~~~-~~~i-~gr~ 367 (460)
.-...|+|-|+|---.. .-|..+|+++|+|....+..+...| +||.|++|++..+|+.|++.+ |+.| ..+.
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 45578999999853222 2367789999999988887777665 999999999999999999999 8877 4566
Q ss_pred EEEE
Q 012564 368 AFVE 371 (460)
Q Consensus 368 i~V~ 371 (460)
..|.
T Consensus 136 f~v~ 139 (698)
T KOG2314|consen 136 FFVR 139 (698)
T ss_pred EEee
Confidence 6664
No 123
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.60 E-value=0.014 Score=63.90 Aligned_cols=77 Identities=18% Similarity=0.349 Sum_probs=67.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCC--eEEEEEe
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGG--QEAFVEK 372 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~g--r~i~V~~ 372 (460)
....+.+||++|..++....|...|..||.|..|.+ ..+.-|++|.|++...++.|+..+ +..|++ +.|.|.+
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy----~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdl 527 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY----RHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDL 527 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeec----ccCCcceeeecccCccchhhHHHHhcCcCCCCCccccccc
Confidence 345688999999999999999999999999998665 667889999999999999999999 888865 6788888
Q ss_pred cccC
Q 012564 373 KKKT 376 (460)
Q Consensus 373 ~~~~ 376 (460)
+.+.
T Consensus 528 a~~~ 531 (975)
T KOG0112|consen 528 ASPP 531 (975)
T ss_pred ccCC
Confidence 7643
No 124
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.48 E-value=0.039 Score=45.48 Aligned_cols=74 Identities=15% Similarity=0.179 Sum_probs=49.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEe---------CCCCceEEEEEEcCHHHHHHHHHHCCCCCCCeE-E
Q 012564 299 GHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVR---------HNKGYCFGFVEFQSSSSVDNAIQASPITIGGQE-A 368 (460)
Q Consensus 299 ~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~---------~~~g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~-i 368 (460)
.+.|.|=+.|.. ....|-++|++||.|....-.++ ...+...-.|.|+++.+|++||..+|..|+|.. +
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv 84 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV 84 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence 455667688876 66788899999999866420000 022466789999999999999999999998754 4
Q ss_pred EEEec
Q 012564 369 FVEKK 373 (460)
Q Consensus 369 ~V~~~ 373 (460)
-|.+.
T Consensus 85 GV~~~ 89 (100)
T PF05172_consen 85 GVKPC 89 (100)
T ss_dssp EEEE-
T ss_pred EEEEc
Confidence 45544
No 125
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.19 E-value=0.068 Score=46.87 Aligned_cols=56 Identities=20% Similarity=0.246 Sum_probs=42.7
Q ss_pred HHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEEecccC
Q 012564 315 SLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEKKKKT 376 (460)
Q Consensus 315 ~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~~~~~~ 376 (460)
+|-+.|..||.+.-+++ ..+ .-+|+|.+-.+|.+||...+.+|+|+.|+|..+.|.
T Consensus 52 ~ll~~~~~~GevvLvRf----v~~--~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRF----VGD--TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEE----ETT--CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEE----eCC--eEEEEECccHHHHHHHccCCcEECCEEEEEEeCCcc
Confidence 67777899999875443 222 358999999999999999999999999999998875
No 126
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.15 E-value=0.011 Score=55.85 Aligned_cols=69 Identities=25% Similarity=0.398 Sum_probs=55.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--------C----c--eEEEEEEcCHHHHHHHHHHC-CCCC
Q 012564 299 GHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--------G----Y--CFGFVEFQSSSSVDNAIQAS-PITI 363 (460)
Q Consensus 299 ~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--------g----~--g~aFV~F~~~e~a~~Al~~~-~~~i 363 (460)
.--||+++||+.+....|+++|++||.|-+|.+...... + . .-|.|+|.+...|+.+...| +..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 467999999999999999999999999998776543221 1 1 22689999999999988888 8888
Q ss_pred CCeE
Q 012564 364 GGQE 367 (460)
Q Consensus 364 ~gr~ 367 (460)
+|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 8865
No 127
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=95.07 E-value=0.21 Score=45.22 Aligned_cols=69 Identities=17% Similarity=0.303 Sum_probs=55.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCC--CCeEEEEE
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITI--GGQEAFVE 371 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i--~gr~i~V~ 371 (460)
....|.|.+||...++++|++++.+-|.|....+..+ +++.|+|-..++++-||..+ ..++ .|....+.
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-----g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yir 185 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-----GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIR 185 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-----cceeeeeeehhhHHHHHHhhccccccCcCcEeeEE
Confidence 3478999999999999999999999999988766333 47899999999999999998 4433 34443443
No 128
>PF12893 Lumazine_bd_2: Putative lumazine-binding; PDB: 3BLZ_C 3DUK_F 3FKA_C.
Probab=94.99 E-value=0.5 Score=39.75 Aligned_cols=104 Identities=18% Similarity=0.233 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhc-----CCCCcceEEEeeeeeeeeCCCc
Q 012564 16 NAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILS-----LDYKNYKAEIKTADAQNSHKEG 89 (460)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~-----l~~~~~~~~i~s~d~q~s~~~g 89 (460)
.+-|+.|++-|. .+.+.|.+.++++..|.... ++. .....+++-.+.+.+ .....+..+|.+||... +-
T Consensus 7 ~~~v~~Y~dg~~~gD~~~l~~~f~~~a~~~~~~-~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~i~i~g---~~ 81 (116)
T PF12893_consen 7 EATVQDYFDGLYNGDSEKLRSAFHPDARLQGVR-KGK-LRTMPIEEFIARVKSRVSPKPPGQERKESILSIDIDG---DV 81 (116)
T ss_dssp HHHHHHHHHHHHHT-HHHHGGGEEEEEEEEEEE-TTE-EEEEETHHHHHHHHHC---H-SSTT-EEEEEEEEEET---TE
T ss_pred HHHHHHHHHHHHhcCHHHHHHhhCCCcEEEEEc-CCc-eEEeCHHHHHHHHHhhccccCCCCCceeEEEEEEEEC---CE
Confidence 345788888887 68899999999999886665 333 244467777777774 34567889999988774 44
Q ss_pred EEEEEEEEEEcCCCCcccEEEeeeeeecCCcEEEEccEEE
Q 012564 90 VTVLVTGCLTGKDNLRRKFAQSFFLAPQDNGYFVLNDVFR 129 (460)
Q Consensus 90 ili~V~G~~~~~~~~~~~F~q~F~L~~~~~~y~v~nDifr 129 (460)
-++.|.=.+. ...|+-.|.|...+++|-|.|=+|.
T Consensus 82 A~a~v~~~~~-----~~~~~d~~~L~K~dg~WkIv~k~~~ 116 (116)
T PF12893_consen 82 ASAKVEYEFP-----GFWFVDYFTLVKTDGGWKIVSKVYH 116 (116)
T ss_dssp EEEEEEEEEE-----TEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEEEC-----CCceEEEEEEEEECCEEEEEEEecC
Confidence 5556654443 3389999999999999999998874
No 129
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=94.66 E-value=0.024 Score=56.44 Aligned_cols=71 Identities=18% Similarity=0.117 Sum_probs=51.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCC----eeEEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEE
Q 012564 300 HSIYIRNLPDTMTVASLEVEFKKFGP----VKQGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQASPITIGGQEAFV 370 (460)
Q Consensus 300 ~~lfV~nLp~~vte~~L~~~F~~~G~----v~~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V 370 (460)
--|-+++||+++++.++.++|..--. ...+-.+.+.+. -.|-|||.|..++.|+.||.+....|+.|-|.+
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIEl 237 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIEL 237 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHH
Confidence 45778899999999999999963222 222222222222 378899999999999999998866777665544
No 130
>PF12680 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8Z_A 3DMC_A 3FH1_A 1TUH_A 3F14_A 3ER7_A 1Z1S_A 3F7X_A ....
Probab=94.59 E-value=0.13 Score=40.91 Aligned_cols=72 Identities=14% Similarity=0.223 Sum_probs=51.5
Q ss_pred HHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcCC--CCcceEEEeeeeeeeeCCCcEEEEEE
Q 012564 19 VEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLD--YKNYKAEIKTADAQNSHKEGVTVLVT 95 (460)
Q Consensus 19 v~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l~--~~~~~~~i~s~d~q~s~~~gili~V~ 95 (460)
|++||+.++ .+.+.|..||+++..+..... ...|.++|.+.+..+- +.+..++|..+ ..-++.+++...
T Consensus 1 V~~~~~a~~~~d~~~i~~~~~~d~~~~~~~~-----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~gd~v~~~~~ 72 (102)
T PF12680_consen 1 VRRFFEAWNAGDLDAIAALFAPDAVFHDPGG-----TLRGREAIREFFEEFFESFPDIRFEIHDI---FADGDRVVVEWT 72 (102)
T ss_dssp HHHHHHHHHTTHHHHHHHTEEEEEEEEETTS-----EEESHHHHHHHHHHHHHHEEEEEEEEEEE---EEETTEEEEEEE
T ss_pred CHHHHHHHHcCCHHHHHHHcCCCEEEEeCCC-----cccCHHHHHHHHHHHHhcCCceEEEEEEE---EEcCCEEEEEEE
Confidence 689999998 566999999999999887744 5889999999998763 45556666666 222344555444
Q ss_pred EEE
Q 012564 96 GCL 98 (460)
Q Consensus 96 G~~ 98 (460)
..+
T Consensus 73 ~~~ 75 (102)
T PF12680_consen 73 VTG 75 (102)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 131
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=94.50 E-value=0.038 Score=52.43 Aligned_cols=76 Identities=26% Similarity=0.386 Sum_probs=61.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHC-----CCCCCCeEEEEEec
Q 012564 300 HSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQAS-----PITIGGQEAFVEKK 373 (460)
Q Consensus 300 ~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~-----~~~i~gr~i~V~~~ 373 (460)
..|||.||...++.+.|+..|+.||.|....+.+|... ..+-++|+|...-.+.+|+..+ +.+..++.+-|+..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 77999999999999999999999999988766666544 4566899999999999888776 34556677767655
Q ss_pred cc
Q 012564 374 KK 375 (460)
Q Consensus 374 ~~ 375 (460)
..
T Consensus 112 eq 113 (275)
T KOG0115|consen 112 EQ 113 (275)
T ss_pred hc
Confidence 43
No 132
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=93.94 E-value=0.045 Score=59.76 Aligned_cols=77 Identities=13% Similarity=0.030 Sum_probs=64.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEeccc
Q 012564 299 GHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKKK 375 (460)
Q Consensus 299 ~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~~ 375 (460)
..++||.|+|+..|.++|+.+|+++|.++++.++..+.. .+|.+||.|.+..++.+++... ...++.+.+.|....|
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 468999999999999999999999999999776555544 5899999999999999998887 6677777777776554
No 133
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=93.86 E-value=0.35 Score=36.13 Aligned_cols=54 Identities=19% Similarity=0.359 Sum_probs=41.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcC----CCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC
Q 012564 299 GHSIYIRNLPDTMTVASLEVEFKKF----GPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS 359 (460)
Q Consensus 299 ~~~lfV~nLp~~vte~~L~~~F~~~----G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~ 359 (460)
-.+|+|.+|. +.+.++|+.+|..| +.. . |.+-.++ -+-|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~-~--IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPF-R--IEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCc-e--EEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 3579999995 68899999999988 433 2 4433333 3689999999999999865
No 134
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=93.46 E-value=0.24 Score=49.00 Aligned_cols=77 Identities=17% Similarity=0.176 Sum_probs=58.4
Q ss_pred CCCCcEEEEcCCC----CCCC-------HHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCC
Q 012564 296 EVEGHSIYIRNLP----DTMT-------VASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITI 363 (460)
Q Consensus 296 ~~~~~~lfV~nLp----~~vt-------e~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i 363 (460)
....++|.++|+= +..+ .++|++-..+||.|.+|.| .++ ...|.+-|.|.+.+.|+.||..| |-.|
T Consensus 262 ~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv-~d~-hPdGvvtV~f~n~eeA~~ciq~m~GR~f 339 (382)
T KOG1548|consen 262 ARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVV-YDR-HPDGVVTVSFRNNEEADQCIQTMDGRWF 339 (382)
T ss_pred ccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEE-ecc-CCCceeEEEeCChHHHHHHHHHhcCeee
Confidence 3446888899972 1223 2456666889999998644 322 24688999999999999999999 9999
Q ss_pred CCeEEEEEecc
Q 012564 364 GGQEAFVEKKK 374 (460)
Q Consensus 364 ~gr~i~V~~~~ 374 (460)
+||+|.-+...
T Consensus 340 dgRql~A~i~D 350 (382)
T KOG1548|consen 340 DGRQLTASIWD 350 (382)
T ss_pred cceEEEEEEeC
Confidence 99999877554
No 135
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=93.37 E-value=1.1 Score=45.01 Aligned_cols=78 Identities=19% Similarity=0.181 Sum_probs=66.0
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 296 EVEGHSIYIRNLPDT-MTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~-vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
..++.-+.|-+|... ++-+.|-.+|-.||.|.+|+++..+ .+-|.|+..+..++++|+..| +..+-|.+|.|...
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk---~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~S 360 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK---PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVS 360 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc---cceeEEEcCcHHHHHHHHHHhccCccccceEEEeec
Confidence 456788889899775 5678899999999999998775443 567999999999999999999 88888999999988
Q ss_pred ccC
Q 012564 374 KKT 376 (460)
Q Consensus 374 ~~~ 376 (460)
+..
T Consensus 361 kQ~ 363 (494)
T KOG1456|consen 361 KQN 363 (494)
T ss_pred ccc
Confidence 765
No 136
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=93.33 E-value=0.79 Score=41.45 Aligned_cols=12 Identities=25% Similarity=0.653 Sum_probs=6.2
Q ss_pred cCCCeeEEEEEE
Q 012564 322 KFGPVKQGGIQV 333 (460)
Q Consensus 322 ~~G~v~~~~i~~ 333 (460)
-||.|.++.+.+
T Consensus 97 IfG~i~d~~fsI 108 (215)
T KOG3262|consen 97 IFGPINDVHFSI 108 (215)
T ss_pred hcccccccEEEE
Confidence 356666554433
No 137
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=93.29 E-value=0.095 Score=52.35 Aligned_cols=76 Identities=13% Similarity=0.110 Sum_probs=58.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCC-eeE--EEEEEeCCC-CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 299 GHSIYIRNLPDTMTVASLEVEFKKFGP-VKQ--GGIQVRHNK-GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 299 ~~~lfV~nLp~~vte~~L~~~F~~~G~-v~~--~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
...|-+++||+..+.++|-++|..|-. |+. +.+++.... ..|-|||+|.+.+.+.+|..+. ...++.|-|.|-..
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 456889999999999999999998864 333 445444433 3788999999999999998888 55556888887655
Q ss_pred c
Q 012564 374 K 374 (460)
Q Consensus 374 ~ 374 (460)
.
T Consensus 360 S 360 (508)
T KOG1365|consen 360 S 360 (508)
T ss_pred c
Confidence 4
No 138
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=92.99 E-value=0.11 Score=54.74 Aligned_cols=77 Identities=13% Similarity=0.124 Sum_probs=62.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhh-cCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCC---CCeEEE
Q 012564 295 EEVEGHSIYIRNLPDTMTVASLEVEFK-KFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITI---GGQEAF 369 (460)
Q Consensus 295 ~~~~~~~lfV~nLp~~vte~~L~~~F~-~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i---~gr~i~ 369 (460)
.....+.|||.||-.-.|.-+|+.++. .+|.|... ++|+. +..|||.|.+.++|.+.+.+| ++.+ +.+.|.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDkI--KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDKI--KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHHHh--hcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 556678999999999999999999998 56666653 44443 456799999999999999999 8776 678888
Q ss_pred EEeccc
Q 012564 370 VEKKKK 375 (460)
Q Consensus 370 V~~~~~ 375 (460)
+++.+.
T Consensus 516 adf~~~ 521 (718)
T KOG2416|consen 516 ADFVRA 521 (718)
T ss_pred eeecch
Confidence 887763
No 139
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=92.87 E-value=0.016 Score=63.19 Aligned_cols=72 Identities=19% Similarity=0.245 Sum_probs=57.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEE
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEA 368 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i 368 (460)
.+..++||+||+..+.+.+|...|..+|.+..+.|....++ -+|+||++|.+++.+.+||... .+.++...+
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v 739 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISV 739 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhh
Confidence 34578999999999999999999999998887665533333 3899999999999999999887 555553333
No 140
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=92.84 E-value=1.1 Score=47.22 Aligned_cols=17 Identities=12% Similarity=0.235 Sum_probs=8.2
Q ss_pred CceEEEEEEcCHHHHHH
Q 012564 338 GYCFGFVEFQSSSSVDN 354 (460)
Q Consensus 338 g~g~aFV~F~~~e~a~~ 354 (460)
|.++.||...+......
T Consensus 343 G~ai~l~~~~d~~~~~~ 359 (456)
T PRK10590 343 GEALSLVCVDEHKLLRD 359 (456)
T ss_pred eeEEEEecHHHHHHHHH
Confidence 45555665554443333
No 141
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=92.82 E-value=0.13 Score=52.11 Aligned_cols=71 Identities=24% Similarity=0.327 Sum_probs=55.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcC--CCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC--CCCCCCeEEEEEeccc
Q 012564 300 HSIYIRNLPDTMTVASLEVEFKKF--GPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS--PITIGGQEAFVEKKKK 375 (460)
Q Consensus 300 ~~lfV~nLp~~vte~~L~~~F~~~--G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~--~~~i~gr~i~V~~~~~ 375 (460)
.++|++||...++.++|+.+|..- +--.. +++ ..+|+||++.+...+.+|++.+ ..++.|+++.|+..-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~--fl~----k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQ--FLV----KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcc--eee----ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 468999999999999999999643 21111 111 2589999999999999999999 6688999999886654
Q ss_pred C
Q 012564 376 T 376 (460)
Q Consensus 376 ~ 376 (460)
+
T Consensus 76 k 76 (584)
T KOG2193|consen 76 K 76 (584)
T ss_pred H
Confidence 3
No 142
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.60 E-value=0.34 Score=46.92 Aligned_cols=61 Identities=21% Similarity=0.089 Sum_probs=48.2
Q ss_pred HHHHHHHhhcCCCeeEEEEEEeCCCC---ceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 313 VASLEVEFKKFGPVKQGGIQVRHNKG---YCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 313 e~~L~~~F~~~G~v~~~~i~~~~~~g---~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
++++++..++||.|..|.|..+..-- .---||+|...+++-+|+-.| |..|+||.++-.+-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 35788889999999998776554331 334699999999999999998 99999998776543
No 143
>cd00781 ketosteroid_isomerase ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon. Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.
Probab=92.46 E-value=1.2 Score=37.38 Aligned_cols=51 Identities=16% Similarity=0.232 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcCC
Q 012564 16 NAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLD 69 (460)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l~ 69 (460)
..+|+.||..++ .+.+.|..+|.++..+.+... ...+.|.++|.+.+..+.
T Consensus 6 ~~~v~~~~~a~~~~D~~~~~~l~aed~~~~~p~~---~~~~~G~~~i~~~~~~~~ 57 (122)
T cd00781 6 KAAVQRYVEAVNAGDPEGIVALFADDATVEDPVG---SPPRSGRAAIAAFYAQSL 57 (122)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHcCCCeEEeCCCC---CCCccCHHHHHHHHHHHh
Confidence 467899999888 588999999999999876432 125889999999998764
No 144
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=92.23 E-value=0.044 Score=60.16 Aligned_cols=78 Identities=18% Similarity=0.266 Sum_probs=61.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEe
Q 012564 295 EEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEK 372 (460)
Q Consensus 295 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~ 372 (460)
......+||++||+..+++.+|+..|..+|.|..|+|.....+ +..|+||.|.+...+-.|+..+ +..|..-.+++..
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 4456689999999999999999999999999999888655333 6789999999999888888777 5555433444433
No 145
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=92.15 E-value=0.15 Score=51.05 Aligned_cols=72 Identities=17% Similarity=0.176 Sum_probs=55.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC-----CceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEE
Q 012564 300 HSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK-----GYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVE 371 (460)
Q Consensus 300 ~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~-----g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~ 371 (460)
..|-|.||...++.++++.||...|+|..+.|.-.... ..-.|||.|.|...+..|-..-...|-++.|.|-
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~ 84 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVR 84 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEE
Confidence 37899999999999999999999999998776432221 2456899999999888776555666656655553
No 146
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=92.03 E-value=0.3 Score=52.48 Aligned_cols=77 Identities=16% Similarity=0.106 Sum_probs=58.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEE-EEEEeC-CCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEE
Q 012564 295 EEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQG-GIQVRH-NKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVE 371 (460)
Q Consensus 295 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~-~i~~~~-~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~ 371 (460)
...-+..|||..||..+++.++-++|...-.|.+. .|..-. ++-.+-|||.|.++++..+|+... .+.++.|.|+|.
T Consensus 430 P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 430 PGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred CCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 34557889999999999999999999887777763 332221 113788999999977777766555 778888888886
No 147
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=90.96 E-value=0.51 Score=51.91 Aligned_cols=11 Identities=18% Similarity=0.163 Sum_probs=5.2
Q ss_pred HHHHHHHHHHC
Q 012564 349 SSSVDNAIQAS 359 (460)
Q Consensus 349 ~e~a~~Al~~~ 359 (460)
+....-||...
T Consensus 501 ~~~~~~~i~~~ 511 (629)
T PRK11634 501 VRHIVGAIANE 511 (629)
T ss_pred HHHHHHHHHhh
Confidence 34444555443
No 148
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=89.99 E-value=0.46 Score=50.90 Aligned_cols=68 Identities=18% Similarity=0.160 Sum_probs=57.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEe
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEK 372 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~ 372 (460)
+..++||+|+...+..+-++.++..||-|.++.. -.|||++|..+.....|+..+ ...+++..+.+..
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr-------~~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKR-------DKFGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhh-------hhhcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 4688999999999999999999999999987543 229999999999999999988 8888887766544
No 149
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=89.77 E-value=1.1 Score=35.40 Aligned_cols=53 Identities=13% Similarity=0.306 Sum_probs=39.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC
Q 012564 300 HSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS 359 (460)
Q Consensus 300 ~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~ 359 (460)
+-.||. .|......+|.++|+.||.|. |.+-.++ -|||...+.+.+..++..+
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~---VsWi~dT---SAfV~l~~r~~~~~v~~~~ 62 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY---VSWINDT---SAFVALHNRDQAKVVMNTL 62 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE---EEEECTT---EEEEEECCCHHHHHHHHHH
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE---EEEEcCC---cEEEEeecHHHHHHHHHHh
Confidence 556665 899999999999999999986 4444443 5999999999999988876
No 150
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=88.60 E-value=0.13 Score=54.89 Aligned_cols=17 Identities=6% Similarity=0.430 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHhc
Q 012564 11 AQVVGNAFVEQYYHILH 27 (460)
Q Consensus 11 ~~~vg~~Fv~~YY~~l~ 27 (460)
.+.++.+|+..||..|-
T Consensus 38 ~K~Laaq~I~kffk~FP 54 (556)
T PF05918_consen 38 EKRLAAQFIPKFFKHFP 54 (556)
T ss_dssp HHHHHHHHHHHHHCC-G
T ss_pred HHHHHHHHHHHHHhhCh
Confidence 34577777777776654
No 151
>TIGR02096 conserved hypothetical protein, steroid delta-isomerase-related. This family of proteins about 135 amino acids in length largely restricted to the Proteobacteria. This family and a delta5-3-ketosteroid isomerase from Pseudomonas testosteroni appear homologous, especially toward their respective N-termini. Members, therefore, probably are enzymes.
Probab=88.58 E-value=4.1 Score=34.28 Aligned_cols=62 Identities=2% Similarity=0.157 Sum_probs=43.9
Q ss_pred HHHHHHHHhcc-CcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC--CCCcceEEEeeeee
Q 012564 18 FVEQYYHILHS-TPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL--DYKNYKAEIKTADA 82 (460)
Q Consensus 18 Fv~~YY~~l~~-~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~i~s~d~ 82 (460)
-|++||+.+++ +.+.|..||.++..+...... ....|.++|.+.+..+ .+.+++++|..+-.
T Consensus 3 iv~~~~~a~~~~d~~~~~~~~~~d~~~~~~~~~---~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~ 67 (129)
T TIGR02096 3 LAQHWIEAFNRGDMDAVLALLAEDVLYDDNQGG---RVLGGKAQLARFLAPYRTAFPDLLVDVVVCRN 67 (129)
T ss_pred HHHHHHHHHHCCCHHHHHHhcCCCeEEEcCCCC---cEeccHHHHHHHHHHHHHhCchhhceeEEEEe
Confidence 47889999985 889999999999877654321 1456799998877644 24466677665533
No 152
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=88.54 E-value=2.5 Score=36.97 Aligned_cols=75 Identities=21% Similarity=0.240 Sum_probs=55.5
Q ss_pred CCCCCcEEEEcCCCCCCC-HHHHHH---HhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEE
Q 012564 295 EEVEGHSIYIRNLPDTMT-VASLEV---EFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQASPITIGGQEAFV 370 (460)
Q Consensus 295 ~~~~~~~lfV~nLp~~vt-e~~L~~---~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V 370 (460)
.++.-.+|.|+-|..++. .++|+. .++.||+|.++.+ .|+--|.|.|.|..+|=+|+.+.....-|..+.+
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~-----cGrqsavVvF~d~~SAC~Av~Af~s~~pgtm~qC 156 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTL-----CGRQSAVVVFKDITSACKAVSAFQSRAPGTMFQC 156 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeee-----cCCceEEEEehhhHHHHHHHHhhcCCCCCceEEe
Confidence 356677888887766654 344444 4689999998643 2667799999999999999999866777777776
Q ss_pred Eecc
Q 012564 371 EKKK 374 (460)
Q Consensus 371 ~~~~ 374 (460)
.+-.
T Consensus 157 sWqq 160 (166)
T PF15023_consen 157 SWQQ 160 (166)
T ss_pred eccc
Confidence 6543
No 153
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=88.30 E-value=0.69 Score=48.57 Aligned_cols=68 Identities=16% Similarity=0.265 Sum_probs=51.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhh--cCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC---CCCCCCeEEEE
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFK--KFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS---PITIGGQEAFV 370 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~--~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~---~~~i~gr~i~V 370 (460)
..+.|.++-||..+-.++++.||+ .|-++.+|..-... .-||+|++..+|+.|.+.+ -.+|.|+.|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-----nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-----NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-----ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 446788899999999999999996 46667666553322 3699999999999998877 45666666543
No 154
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=86.45 E-value=1.7 Score=39.29 Aligned_cols=8 Identities=13% Similarity=0.202 Sum_probs=3.3
Q ss_pred HHHhhcCC
Q 012564 317 EVEFKKFG 324 (460)
Q Consensus 317 ~~~F~~~G 324 (460)
.++|....
T Consensus 95 DEIfG~i~ 102 (215)
T KOG3262|consen 95 DEIFGPIN 102 (215)
T ss_pred hhhccccc
Confidence 34444433
No 155
>PF08332 CaMKII_AD: Calcium/calmodulin dependent protein kinase II Association; InterPro: IPR013543 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain is found at the C terminus of the Calcium/calmodulin dependent protein kinases II (CaMKII). These proteins also have a Ser/Thr protein kinase domain (IPR000719 from INTERPRO) at their N terminus []. The function of the CaMKII association domain is the assembly of the single proteins into large (8 to 14 subunits) multimers [] and is a prominent kinase in the central nervous system that may function in long-term potentiation and neurotransmitter release. ; GO: 0004683 calmodulin-dependent protein kinase activity, 0005516 calmodulin binding, 0006468 protein phosphorylation; PDB: 2W2C_F 3H51_B 3SOA_A 2UX0_A 1HKX_M 2F86_B.
Probab=84.41 E-value=24 Score=30.45 Aligned_cols=111 Identities=12% Similarity=0.045 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHhccCcchhcccccCC-ceEEeeCCCCcceeeccHHHHHHHHhcC---CCCcceEEEeeeeeeeeCC
Q 012564 12 QVVGNAFVEQYYHILHSTPELVFRFYQDS-SVLSRPDSNGVMTSVTTMEGINQKILSL---DYKNYKAEIKTADAQNSHK 87 (460)
Q Consensus 12 ~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~-S~l~~~~~~~~~~~~~g~~~I~~~~~~l---~~~~~~~~i~s~d~q~s~~ 87 (460)
++|...|-++==.+-..+++.+.++|.++ +.|...-.+ ..+.|++.|...+..+ .-...+..|.+-..|-..+
T Consensus 3 ~eI~~l~~~w~~ai~tgD~~~~~~ly~~d~av~~Pt~s~---~~~~g~~~~~~YF~~~l~~~~~~~~~tI~~p~V~~lg~ 79 (128)
T PF08332_consen 3 QEIAALFDRWNDAIQTGDPETYAKLYAPDVAVFEPTVSN---QLREGLEFHKFYFDHFLAKKPQGVNTTILNPHVRLLGD 79 (128)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHEEEEEEEEEGGGTT---SEEESCHHHHHHHHHTGTTTSSCEEEEEEEEEEEEEST
T ss_pred HHHHHHHHHHHHHHHcCCHHHHhhhcCCCeeEeccccCC---ceecChHHHHHHHhcccccCCCceeeEecCCeEEEcCC
Confidence 46666665554445558999999999999 777554331 2778999999888733 3344556677777777666
Q ss_pred CcEEEEEEEEEEcCC--CCc--ccEEEeeeeeecCCcEEEEc
Q 012564 88 EGVTVLVTGCLTGKD--NLR--RKFAQSFFLAPQDNGYFVLN 125 (460)
Q Consensus 88 ~gili~V~G~~~~~~--~~~--~~F~q~F~L~~~~~~y~v~n 125 (460)
+..++.=+=.++..+ ..+ ..---||+....+++|-|.+
T Consensus 80 ~~Ai~~gvy~f~~~d~~G~~~~~~areT~v~~~~~g~W~ivh 121 (128)
T PF08332_consen 80 NAAIDAGVYTFQFVDKDGVPRTVQARETRVWQKRDGKWKIVH 121 (128)
T ss_dssp TEEEEEEEEEEEEESTTSSEEEEEEEEEEEEEEETTEEEEEE
T ss_pred CEEEEeeEEEEEeecCCCCeeeEEEeEEEEEEEeCCeEEEEE
Confidence 655444444444422 233 23456788888888998875
No 156
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=84.27 E-value=0.33 Score=48.03 Aligned_cols=80 Identities=16% Similarity=0.292 Sum_probs=58.4
Q ss_pred CCCcEEEEcCCCCCCCHHH-H--HHHhhcCCCeeEEEEEEeCC--C---CceEEEEEEcCHHHHHHHHHHC-CCCCCCeE
Q 012564 297 VEGHSIYIRNLPDTMTVAS-L--EVEFKKFGPVKQGGIQVRHN--K---GYCFGFVEFQSSSSVDNAIQAS-PITIGGQE 367 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~-L--~~~F~~~G~v~~~~i~~~~~--~---g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~ 367 (460)
.....+||-+|+..+.++. | .+.|.+||.|..+.+..+.. . +.+-++|+|...+++..||... ++.+.|+.
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 3456788889988765544 3 34689999998865544331 1 2556899999999999999998 88888888
Q ss_pred EEEEecccC
Q 012564 368 AFVEKKKKT 376 (460)
Q Consensus 368 i~V~~~~~~ 376 (460)
|+..+..++
T Consensus 155 lka~~gttk 163 (327)
T KOG2068|consen 155 LKASLGTTK 163 (327)
T ss_pred hHHhhCCCc
Confidence 776655543
No 157
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=83.29 E-value=0.36 Score=51.67 Aligned_cols=12 Identities=8% Similarity=0.050 Sum_probs=5.0
Q ss_pred eccHHHHHHHHh
Q 012564 55 VTTMEGINQKIL 66 (460)
Q Consensus 55 ~~g~~~I~~~~~ 66 (460)
+.|++++.+.|.
T Consensus 214 ~~g~qeLv~ii~ 225 (556)
T PF05918_consen 214 IEGRQELVDIIE 225 (556)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 334444444443
No 158
>PF06273 eIF-4B: Plant specific eukaryotic initiation factor 4B; InterPro: IPR010433 This family consists of several plant specific eukaryotic initiation factor 4B proteins.
Probab=83.22 E-value=3.5 Score=42.99 Aligned_cols=9 Identities=11% Similarity=0.438 Sum_probs=4.0
Q ss_pred CCCCCCCCC
Q 012564 449 HPAAVSAWS 457 (460)
Q Consensus 449 ~~~~~~~~~ 457 (460)
+++....|+
T Consensus 208 ~~~dsD~W~ 216 (492)
T PF06273_consen 208 GADDSDRWG 216 (492)
T ss_pred CCCchhhcc
Confidence 344444453
No 159
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=82.79 E-value=0.7 Score=47.63 Aligned_cols=75 Identities=13% Similarity=0.227 Sum_probs=56.0
Q ss_pred CCcEEEEcCCCCCC-CHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEEecccC
Q 012564 298 EGHSIYIRNLPDTM-TVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEKKKKT 376 (460)
Q Consensus 298 ~~~~lfV~nLp~~v-te~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~~~~~~ 376 (460)
+.+.|-+.-.++.. +..+|..+|.+||.|..|.|-+. .-.|.|+|.+..+|-.|-...+..|++|-|+|-+-.+.
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~----~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS----SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc----hhhheeeeeccccccchhccccceecCceeEEEEecCC
Confidence 33444444445554 56899999999999998665322 23589999999998777655589999999999998873
No 160
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=82.57 E-value=2 Score=44.64 Aligned_cols=11 Identities=0% Similarity=0.205 Sum_probs=5.5
Q ss_pred HHHHHHHHHHC
Q 012564 349 SSSVDNAIQAS 359 (460)
Q Consensus 349 ~e~a~~Al~~~ 359 (460)
.+.++.+....
T Consensus 302 ~~~l~~~Fk~F 312 (419)
T KOG0116|consen 302 PAELEEVFKQF 312 (419)
T ss_pred HHHHHHHHhhc
Confidence 34455555544
No 161
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=82.07 E-value=5.6 Score=38.95 Aligned_cols=69 Identities=14% Similarity=0.182 Sum_probs=49.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHCCCCCCCeE-EEEEe
Q 012564 299 GHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQASPITIGGQE-AFVEK 372 (460)
Q Consensus 299 ~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~-i~V~~ 372 (460)
...|-|=+++.. ....|-.+|++||.|.+. +.- . ...+-+|.|.+..+|++||.+.+..|+|.. |-|..
T Consensus 197 D~WVTVfGFppg-~~s~vL~~F~~cG~Vvkh--v~~-~-ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 197 DTWVTVFGFPPG-QVSIVLNLFSRCGEVVKH--VTP-S-NGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKP 266 (350)
T ss_pred cceEEEeccCcc-chhHHHHHHHhhCeeeee--ecC-C-CCceEEEEecchhHHHHhhhhcCeeeccceEEeeee
Confidence 344444477654 456788899999999763 222 2 234679999999999999999999887754 44443
No 162
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=80.27 E-value=2.2 Score=38.99 Aligned_cols=68 Identities=15% Similarity=0.161 Sum_probs=41.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhc-CCCe---eEEEEEEeCCC----CceEEEEEEcCHHHHHHHHHHC-CCCC
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKK-FGPV---KQGGIQVRHNK----GYCFGFVEFQSSSSVDNAIQAS-PITI 363 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~-~G~v---~~~~i~~~~~~----g~g~aFV~F~~~e~a~~Al~~~-~~~i 363 (460)
+....+|-|++||+.+|++++.+.++. ++.. ..+.-...... -..-|||.|.+.+++..-+... ++.+
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F 80 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVF 80 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEE
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEE
Confidence 345679999999999999999887665 5554 33221122111 1566899999999988888877 6555
No 163
>PF13577 SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RFR_A 3B8L_F 2CHC_A 3A76_A 3EF8_B.
Probab=79.05 E-value=14 Score=30.73 Aligned_cols=67 Identities=9% Similarity=0.134 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC--CCCcceEEEeeeeee
Q 012564 15 GNAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL--DYKNYKAEIKTADAQ 83 (460)
Q Consensus 15 g~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~i~s~d~q 83 (460)
-..++..|...++ .+.+.+..+|.++..+.+.+.. ...+.|.++|.+.+... .+..+.|.+.+....
T Consensus 9 I~~l~~~~~~~~D~~~~~~~~~lft~d~~~~~~~~~--~~~~~G~~~i~~~~~~~~~~~~~~~H~~~~~~v~ 78 (127)
T PF13577_consen 9 IRDLIARYARALDTGDWEEWADLFTEDAVFDFPGFG--FGRYRGRDAIRAFLRARFDGFAATRHMVTNPVVD 78 (127)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHTTEEEEEEEEETTTC--EEEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhhCCCHHHHHhccCCcEEEEEeCcc--ccccCCHHHHHHHHHHhcccccceeEEccceEEE
Confidence 3566777777777 7888999999999999877521 12688999999999864 233456666655443
No 164
>PRK06958 single-stranded DNA-binding protein; Provisional
Probab=76.43 E-value=6.6 Score=36.02 Aligned_cols=10 Identities=30% Similarity=0.388 Sum_probs=5.9
Q ss_pred cEEEEcCCCC
Q 012564 300 HSIYIRNLPD 309 (460)
Q Consensus 300 ~~lfV~nLp~ 309 (460)
+.+.|++|-.
T Consensus 6 ~V~LiGrLg~ 15 (182)
T PRK06958 6 KVILVGNLGA 15 (182)
T ss_pred EEEEEEEecC
Confidence 4456677753
No 165
>PF03284 PHZA_PHZB: Phenazine biosynthesis protein A/B; InterPro: IPR004964 The phenazine biosynthesis proteins A and B are involved in the biosynthesis of this antibiotic. Phenazine is a nitrogen-containing heterocyclic molecule with important implications in virulence, competition and biological control.; GO: 0017000 antibiotic biosynthetic process; PDB: 3EX9_A 3JUP_B 3DZL_A 3JUN_A 3JUO_A 3CNM_A 3JUM_B 3JUQ_A 3B4O_A 3B4P_B ....
Probab=75.95 E-value=16 Score=32.09 Aligned_cols=101 Identities=15% Similarity=0.168 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHhccCcchhcccccCCceE-EeeCCCCcceeeccHHHHHHHHh-cCC-CCcc-eEEEeeeeeeeeCCC
Q 012564 13 VVGNAFVEQYYHILHSTPELVFRFYQDSSVL-SRPDSNGVMTSVTTMEGINQKIL-SLD-YKNY-KAEIKTADAQNSHKE 88 (460)
Q Consensus 13 ~vg~~Fv~~YY~~l~~~p~~l~~fY~~~S~l-~~~~~~~~~~~~~g~~~I~~~~~-~l~-~~~~-~~~i~s~d~q~s~~~ 88 (460)
++-..=|+||-++--+.+=.=|.||.++-+. .|....|....+.|.+.+.++.. +|. |.+- -+.|.-++.|. .+
T Consensus 18 ~~NR~~Ve~Ym~t~g~~RL~Rh~LF~eDG~~glwtTdtG~Piv~~G~~~L~~havwslkcFPDWeW~nv~ifeT~D--P~ 95 (162)
T PF03284_consen 18 RINRATVEQYMNTKGQDRLRRHELFTEDGCGGLWTTDTGEPIVIRGRDRLAEHAVWSLKCFPDWEWYNVRIFETQD--PN 95 (162)
T ss_dssp HHHHHHHHHHHC--GGGGGGGGGGEEEEEEEEESS-TTSS-EEEESHHHHHHHHHHHHHHSTT-EEEEEEEEEBSS--TT
T ss_pred HhhHHHHHHHHHcCchhhhhhheeeccCCccccccCCCCceEEEEhHHHHHHHHHHHHHHCCCcEEEEEEeecccC--CC
Confidence 4667889999998888998999999998877 78887788889999999998543 331 3321 33344444442 35
Q ss_pred cEEEEEEEEEEc--CCCC----cccEEEeeeee
Q 012564 89 GVTVLVTGCLTG--KDNL----RRKFAQSFFLA 115 (460)
Q Consensus 89 gili~V~G~~~~--~~~~----~~~F~q~F~L~ 115 (460)
.+.|-+-|.=++ .+-+ ..+|.|+|.|.
T Consensus 96 ~fwVEcdG~G~i~fpGypeg~y~NHfiHsFel~ 128 (162)
T PF03284_consen 96 HFWVECDGRGKILFPGYPEGYYENHFIHSFELE 128 (162)
T ss_dssp EEEEEEEEEEEE--TTS--EEEEEEEEEEEEEE
T ss_pred EEEEEecCccceecCCCCcccceeeeEEEEEee
Confidence 577777766444 4422 36899999985
No 166
>COG4875 Uncharacterized protein conserved in bacteria with a cystatin-like fold [Function unknown]
Probab=75.17 E-value=51 Score=28.14 Aligned_cols=110 Identities=16% Similarity=0.186 Sum_probs=68.3
Q ss_pred CCCHHHHHHHHHHHHHHHhccCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhc---CCCC-cceEEEeeeeee
Q 012564 8 PPSAQVVGNAFVEQYYHILHSTPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILS---LDYK-NYKAEIKTADAQ 83 (460)
Q Consensus 8 ~~~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~---l~~~-~~~~~i~s~d~q 83 (460)
-+.-.+|+.-|=++-=.++.-+|+++...|.++..|.-.-.+. .-+.+.+|.+.+.. +..+ .+.-+...+-|-
T Consensus 33 ~~t~~~vAaLFdrWN~~L~TGdP~kV~anyApDaVLLPT~Sn~---vR~s~~ei~DYF~~FLk~KPqG~IdsR~i~~gcN 109 (156)
T COG4875 33 NVTEREVAALFDRWNAALTTGDPNKVAANYAPDAVLLPTMSNQ---VRSSRSEILDYFSHFLKLKPQGYIDSRKITLGCN 109 (156)
T ss_pred CccHHHHHHHHHHHHhhhhcCChHHHHhhcCCceEeecccccc---cccCHHHHHHHHHHHhccCCcceecceeEEeccc
Confidence 3567789999999988999999999999999999884322211 34467888877653 3222 122222223344
Q ss_pred eeCCCcEEEEEEEEEEcCC-CCcccEEEeeeeeecCCcEEEEcc
Q 012564 84 NSHKEGVTVLVTGCLTGKD-NLRRKFAQSFFLAPQDNGYFVLND 126 (460)
Q Consensus 84 ~s~~~gili~V~G~~~~~~-~~~~~F~q~F~L~~~~~~y~v~nD 126 (460)
.-++-|..-.+.+ ++ +..-++ ||+-..+++.|.|.|.
T Consensus 110 ~AlD~GtYTF~f~----DGs~v~ARY--tftY~w~~g~WlI~~H 147 (156)
T COG4875 110 NALDAGTYTFIFT----DGSNVQARY--TFTYSWIDGTWLIVNH 147 (156)
T ss_pred cccccceEEEEEc----CCcceeEEE--EEEEEecCCeEEEEec
Confidence 4444444333332 22 122233 5888889999999884
No 167
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=73.10 E-value=4.4 Score=31.23 Aligned_cols=67 Identities=21% Similarity=0.286 Sum_probs=35.1
Q ss_pred EEEEcCCC--CCCCHHHHHHHhhcCCCeeEEE---EEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 301 SIYIRNLP--DTMTVASLEVEFKKFGPVKQGG---IQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 301 ~lfV~nLp--~~vte~~L~~~F~~~G~v~~~~---i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
++|| |+. ..++..+|-.++...+.|..-. |.+ ...|.||+-... .+..++..+ +..++|+.|+|+.+
T Consensus 2 rl~i-n~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I----~~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 2 RLFI-NVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDI----FDNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp EEEE-S-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-----SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred EEEE-EcccccCCCHHHHHHHHHhccCCCHHhEEEEEE----eeeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4555 443 3578889999987765554321 211 245788887754 677788887 89999999999864
No 168
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=72.75 E-value=15 Score=27.83 Aligned_cols=54 Identities=13% Similarity=0.146 Sum_probs=41.0
Q ss_pred CCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEE
Q 012564 310 TMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFV 370 (460)
Q Consensus 310 ~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V 370 (460)
.++-++|+..+.+|+-.. |..++ .| =||.|.+..+|+++.... +..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~~---I~~d~---tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDR---IRDDR---TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcce---EEecC---CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 468899999999997543 43333 34 489999999999999988 77776666654
No 169
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=70.85 E-value=2 Score=42.35 Aligned_cols=74 Identities=11% Similarity=0.071 Sum_probs=57.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHCC-CCCCCeEEEEE
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQASP-ITIGGQEAFVE 371 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~~-~~i~gr~i~V~ 371 (460)
...++|++++.+.+.+.++..+|..+|.+..+.+...... .++++++.|...+.+..+|.... ..+.++.+...
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~d 163 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKD 163 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCc
Confidence 4688999999999999999999999997766544333333 58999999999999999999884 45555554444
No 170
>PRK11901 hypothetical protein; Reviewed
Probab=66.59 E-value=70 Score=32.00 Aligned_cols=66 Identities=15% Similarity=0.202 Sum_probs=43.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCC-ceEEEE--EEcCHHHHHHHHHHCCCCCC
Q 012564 295 EEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKG-YCFGFV--EFQSSSSVDNAIQASPITIG 364 (460)
Q Consensus 295 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g-~g~aFV--~F~~~e~a~~Al~~~~~~i~ 364 (460)
.....++|-|..+. +++.|+.|..+++ +..+.|......| ..|..| .|.+.++|+.|+..|+..|.
T Consensus 241 ~p~~~YTLQL~Aas---~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~lq 309 (327)
T PRK11901 241 APASHYTLQLSSAS---RSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAEVQ 309 (327)
T ss_pred CCCCCeEEEeecCC---CHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHHHH
Confidence 34566788776654 6888988888775 3444443332334 344333 78899999999999966553
No 171
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=63.58 E-value=86 Score=26.27 Aligned_cols=65 Identities=11% Similarity=0.012 Sum_probs=43.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCC-CeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCC
Q 012564 300 HSIYIRNLPDTMTVASLEVEFKKFG-PVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIG 364 (460)
Q Consensus 300 ~~lfV~nLp~~vte~~L~~~F~~~G-~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~ 364 (460)
..+-+...|..++.++|..+.+.+- .|..++|+.+....+..+.+.|.+.+.|+.=.... |..++
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3344444555566677776666554 45566665554446778999999999999877766 66664
No 172
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=63.45 E-value=5 Score=44.50 Aligned_cols=73 Identities=21% Similarity=0.156 Sum_probs=58.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCC--CCeEEEEEecccC
Q 012564 300 HSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITI--GGQEAFVEKKKKT 376 (460)
Q Consensus 300 ~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i--~gr~i~V~~~~~~ 376 (460)
.+.++-|..-..+...|..+|++||.|.++.... +...+.|+|...+.|-.|++++ |.++ .|-..+|.++++-
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr----~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLR----DLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheecc----cccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 4456667777788899999999999998854322 2446999999999999999999 6655 6778999999865
No 173
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=63.16 E-value=60 Score=31.75 Aligned_cols=52 Identities=19% Similarity=0.223 Sum_probs=37.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHH
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSS 350 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e 350 (460)
..-.+-||++||+.++.-.+|+..+.+.+.+- ..|.+. ...+-||+.|.+..
T Consensus 327 a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~iswk--g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 327 AGAKTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISWK--GHFGKCFLHFGNRK 378 (396)
T ss_pred CccccceeeccCccccchHHHHHHHHhcCCCc-eeEeee--cCCcceeEecCCcc
Confidence 33446699999999999999999998877542 223222 12556799998753
No 174
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=62.13 E-value=18 Score=33.25 Aligned_cols=61 Identities=26% Similarity=0.209 Sum_probs=40.2
Q ss_pred CHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHCC---CCCCCeEEEEEecccC
Q 012564 312 TVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQASP---ITIGGQEAFVEKKKKT 376 (460)
Q Consensus 312 te~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~~---~~i~gr~i~V~~~~~~ 376 (460)
..+.|+++|..|+.+..+.+ + ++.+-..|.|.+.+.|.+|...+. ..+.|..++|-+..+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~-L---~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSP-L---KSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEE-E---TTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEE-c---CCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 45789999999998876433 2 223347999999999999998863 5689999999877543
No 175
>PF07366 SnoaL: SnoaL-like polyketide cyclase; InterPro: IPR009959 This domain is found in SnoaL [] a polyketide cyclase involved in nogalamycin biosynthesis. This domain was formerly known as DUF1486. It adopts a distorted alpha-beta barrel fold []. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalysing intramolecular aldol condensation [].; PDB: 2GEY_C 3F9S_A 2GEX_A 3EHC_B 2F99_D 2F98_D 1SJW_A 3K0Z_B.
Probab=59.78 E-value=73 Score=26.48 Aligned_cols=60 Identities=15% Similarity=0.244 Sum_probs=42.6
Q ss_pred HHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC--CCCcceEEEeeeeee
Q 012564 20 EQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL--DYKNYKAEIKTADAQ 83 (460)
Q Consensus 20 ~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~i~s~d~q 83 (460)
+.|+..++ .+.+.|..||.++..+...+. ....|.+++.+.+..+ -|.+.+++|..+-+.
T Consensus 5 ~~~~~~~n~~d~~~~~~~~~~d~~~~~~~~----~~~~G~~~~~~~~~~~~~afPD~~~~i~~~~~~ 67 (126)
T PF07366_consen 5 RFYEEVWNRGDLDALDELVAPDVVFHDPGP----GPPVGREGFKEFLKELRAAFPDLRFEIEDVVAE 67 (126)
T ss_dssp HHHHHHHHTT-GCHHHGTEEEEEEEEGCTT----TEEEHHHHHHHHHHHHHHHSTTTEEEEEEEEEE
T ss_pred HHHHHHHhCCCHHHHHHhcCCCEEEEecCC----CCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEE
Confidence 34445556 478999999999998876653 2677888888888754 355778888876654
No 176
>COG4319 Ketosteroid isomerase homolog [Function unknown]
Probab=58.65 E-value=49 Score=28.86 Aligned_cols=95 Identities=15% Similarity=0.160 Sum_probs=62.2
Q ss_pred cCcchhcccccCCceEEee-CCCCcceeeccHHHHHHHHhcCC-CCcceEEEeeeeeeeeCCCcEEEEEEEEEEcCC---
Q 012564 28 STPELVFRFYQDSSVLSRP-DSNGVMTSVTTMEGINQKILSLD-YKNYKAEIKTADAQNSHKEGVTVLVTGCLTGKD--- 102 (460)
Q Consensus 28 ~~p~~l~~fY~~~S~l~~~-~~~~~~~~~~g~~~I~~~~~~l~-~~~~~~~i~s~d~q~s~~~gili~V~G~~~~~~--- 102 (460)
.+-+-|..||.++..+.-. +. .+.|.+.|.+.+...- .....++.+..+-|-.- .|=+..|+|.+.+..
T Consensus 26 ~D~~av~~~YtdDav~f~~~~~-----~~~Gk~~i~k~~~~~~~~~~~~~~f~~~el~v~~-~GD~a~~~~~~~~~~~~~ 99 (137)
T COG4319 26 KDADAVADFYTDDAVVFPPPGL-----QRKGKAAIRKAFEGIFAMGIGPLKFTLEELQVHE-SGDVAFVTALLLLTGTKK 99 (137)
T ss_pred ccHHHHHHhcCCceEEecCCCC-----cccCHHHHHHHHHHHHHhccCCCcceeeeeeeec-cCCEEEEEEeeeeeccCC
Confidence 6777899999999987544 44 7889999999988531 11223344444445322 334566777765543
Q ss_pred -CCc--ccEEEeeeeeecCC-cEEEEcc-EE
Q 012564 103 -NLR--RKFAQSFFLAPQDN-GYFVLND-VF 128 (460)
Q Consensus 103 -~~~--~~F~q~F~L~~~~~-~y~v~nD-if 128 (460)
.+. ...-=|.+|.++.+ +|.|..| ++
T Consensus 100 dg~~~~~~~Rat~v~rK~~dg~Wk~~~dh~~ 130 (137)
T COG4319 100 DGPPADLAGRATYVFRKEADGGWKLAHDHIP 130 (137)
T ss_pred CCcchhheeeeEEEEEEcCCCCEEEEEeccc
Confidence 221 45566788888876 9999988 54
No 177
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=56.72 E-value=25 Score=27.89 Aligned_cols=47 Identities=15% Similarity=0.192 Sum_probs=38.6
Q ss_pred HHHhccCcchhcccccCCc-eEEeeCCCCcceeeccHHHHHHHHhcCC
Q 012564 23 YHILHSTPELVFRFYQDSS-VLSRPDSNGVMTSVTTMEGINQKILSLD 69 (460)
Q Consensus 23 Y~~l~~~p~~l~~fY~~~S-~l~~~~~~~~~~~~~g~~~I~~~~~~l~ 69 (460)
|..|.+.=..|.+|..+.. +|.|.|.+|...+++.+.++.+.|.-..
T Consensus 22 ~e~L~~~v~~~c~~~~~q~ft~kw~DEEGDp~tiSS~~EL~EA~rl~~ 69 (83)
T cd06404 22 LEELCNEVRDMCRFHNDQPFTLKWIDEEGDPCTISSQMELEEAFRLYE 69 (83)
T ss_pred HHHHHHHHHHHhCCCCCCcEEEEEECCCCCceeecCHHHHHHHHHHHH
Confidence 5666667777888888765 8899999999889999999999988554
No 178
>KOG2044 consensus 5'-3' exonuclease HKE1/RAT1 [Replication, recombination and repair; RNA processing and modification]
Probab=55.33 E-value=39 Score=37.67 Aligned_cols=60 Identities=23% Similarity=0.145 Sum_probs=34.8
Q ss_pred HHHHHHHHH--hccCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC---C-CC-cceEEEeeeeeeee
Q 012564 17 AFVEQYYHI--LHSTPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL---D-YK-NYKAEIKTADAQNS 85 (460)
Q Consensus 17 ~Fv~~YY~~--l~~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l---~-~~-~~~~~i~s~d~q~s 85 (460)
+++-+||.. |+++|.= .+-.++..|. .+.-.|-.+|++.|.+. | +. +++|+|-.+|+=-.
T Consensus 171 a~aLrYyI~~rLn~DPgW------kNikvIlSDA---nVPGEGEHKIM~yIR~QR~~P~~dPNT~HclyGlDADLI 237 (931)
T KOG2044|consen 171 AKALRYYIHDRLNSDPGW------KNIKVILSDA---NVPGEGEHKIMSYIRSQRAQPGYDPNTHHCLYGLDADLI 237 (931)
T ss_pred HHHHHHHHHHhhcCCccc------cceEEEEecC---CCCCcchhHHHHHHHHccCCCCCCCCceeeeecCCccce
Confidence 455678864 4444431 1223333333 12335889999999854 2 21 56888988887653
No 179
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=54.74 E-value=2.1e+02 Score=31.21 Aligned_cols=10 Identities=20% Similarity=0.272 Sum_probs=4.9
Q ss_pred HHHhhcCCCe
Q 012564 317 EVEFKKFGPV 326 (460)
Q Consensus 317 ~~~F~~~G~v 326 (460)
..+....|..
T Consensus 339 ~~yvqRiGRa 348 (572)
T PRK04537 339 EDYVHRIGRT 348 (572)
T ss_pred HHHhhhhccc
Confidence 4444555554
No 180
>COG5073 VID24 Vacuolar import and degradation protein [Intracellular trafficking and secretion]
Probab=51.14 E-value=6.5 Score=37.24 Aligned_cols=77 Identities=21% Similarity=0.245 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhccCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcCCCCcceEEEeeeeeeeeCCCcEEEEE
Q 012564 15 GNAFVEQYYHILHSTPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLDYKNYKAEIKTADAQNSHKEGVTVLV 94 (460)
Q Consensus 15 g~~Fv~~YY~~l~~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~s~d~q~s~~~gili~V 94 (460)
-+.-|+.||..-++++..+...|...+-+.++|. .+.|.+ |...+.-.+.++|.+||-+- -+.--|=++
T Consensus 50 k~~~ve~~~~~~~kn~~~~~~s~~~~~~~Lr~G~-----qF~G~Q-----is~~~~~~v~v~i~~Vdl~~-kd~~sl~~l 118 (272)
T COG5073 50 KHKKVETYYMIRHKNKRRLFSSYTRRSGFLRNGA-----QFGGVQ-----ISGYPPLTVEVNIDTVDLPK-KDDYSLPHL 118 (272)
T ss_pred eeeeEeecceecccCceEeeeeccchhhhccCcc-----ccccEe-----ccCCcceEEEEEEEEEeccc-cccccccce
Confidence 3445778999999999999999999888889987 787776 44554445788999999988 444445889
Q ss_pred EEEEEcCC
Q 012564 95 TGCLTGKD 102 (460)
Q Consensus 95 ~G~~~~~~ 102 (460)
+|++.+..
T Consensus 119 ~G~l~i~~ 126 (272)
T COG5073 119 CGTLNIQN 126 (272)
T ss_pred eeEEEEec
Confidence 99987755
No 181
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.03 E-value=58 Score=34.95 Aligned_cols=75 Identities=19% Similarity=0.261 Sum_probs=56.5
Q ss_pred CCcEEEEcCCCCC-CCHHHHHHHhhcC----CCeeEEEEEEeC-------------------------------------
Q 012564 298 EGHSIYIRNLPDT-MTVASLEVEFKKF----GPVKQGGIQVRH------------------------------------- 335 (460)
Q Consensus 298 ~~~~lfV~nLp~~-vte~~L~~~F~~~----G~v~~~~i~~~~------------------------------------- 335 (460)
..++|-|.|+.|+ +...+|.-+|..| |.|.+|.|....
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 4688999999986 6778999998765 578887764221
Q ss_pred -----------CC-CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEe
Q 012564 336 -----------NK-GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEK 372 (460)
Q Consensus 336 -----------~~-g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~ 372 (460)
++ +.-||.|+|.+.+.|.+.-+.+ |+++......++.
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DL 302 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDL 302 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeee
Confidence 00 1347999999999999999999 9999765555553
No 182
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=49.60 E-value=29 Score=38.44 Aligned_cols=10 Identities=0% Similarity=-0.021 Sum_probs=4.0
Q ss_pred HHHHHHHHhc
Q 012564 58 MEGINQKILS 67 (460)
Q Consensus 58 ~~~I~~~~~~ 67 (460)
..++.+.|..
T Consensus 435 e~dL~~~fee 444 (894)
T KOG0132|consen 435 EQDLANLFEE 444 (894)
T ss_pred HHHHHHHHHh
Confidence 3344444443
No 183
>PRK10905 cell division protein DamX; Validated
Probab=49.33 E-value=1.4e+02 Score=29.84 Aligned_cols=65 Identities=12% Similarity=0.105 Sum_probs=43.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCc-eEEE--EEEcCHHHHHHHHHHCCCCCC
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGY-CFGF--VEFQSSSSVDNAIQASPITIG 364 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~-g~aF--V~F~~~e~a~~Al~~~~~~i~ 364 (460)
....++|-|.-+. +.+.|+++..+.| +....+......|+ .|-. =.|.+.++|++||..|+..|.
T Consensus 244 pa~~YTLQL~A~S---s~~~l~~fakKlg-L~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa~vQ 311 (328)
T PRK10905 244 PSSHYTLQLSSSS---NYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPADVQ 311 (328)
T ss_pred CCCceEEEEEecC---CHHHHHHHHHHcC-CCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCHHHH
Confidence 3456788887776 7788888888875 33322333323344 4433 378899999999999976663
No 184
>PF12870 Lumazine_bd: Lumazine-binding domain; InterPro: IPR024267 This entry represents a lumazine-binding domain found in a family of putative lipoproteins from bacteria. Lumazine is a fluorescent accessory protein having 6,7-dimethyl-8-(1'-D-ribityl) lumazine (DMRL) as its authentic chromophore; it modulates the emission of bacterial luciferase to shorter wavelengths with increasing luminous strength.; PDB: 3K7C_C.
Probab=48.86 E-value=36 Score=27.36 Aligned_cols=46 Identities=20% Similarity=0.160 Sum_probs=25.6
Q ss_pred eEEEeeeeeeeeCCCcEEEEEEEEEEcCCCCcccEEEeeeeeecCCcEEEE
Q 012564 74 KAEIKTADAQNSHKEGVTVLVTGCLTGKDNLRRKFAQSFFLAPQDNGYFVL 124 (460)
Q Consensus 74 ~~~i~s~d~q~s~~~gili~V~G~~~~~~~~~~~F~q~F~L~~~~~~y~v~ 124 (460)
.++|..+.-... ++- ..|+-.++..+..... .+|.|...++.|+|.
T Consensus 66 ~~~~~~v~~~~~-g~~--A~V~v~~~~~~g~~~~--~~~~lvk~dg~Wkv~ 111 (111)
T PF12870_consen 66 SIKIVEVEENTI-GDT--ATVTVKITYKDGKEKT--FTVPLVKEDGKWKVC 111 (111)
T ss_dssp SEEEEEEEEEEE-SSE--EEEEEEEEETTS-EEE--EEEEEEEETTEEEE-
T ss_pred ceEEEEEEEecc-CCE--EEEEEEEEECCCCeeE--EEEEEEEECCEEEeC
Confidence 344444444433 333 3444446666655554 367888899999983
No 185
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=47.63 E-value=41 Score=28.47 Aligned_cols=45 Identities=24% Similarity=0.321 Sum_probs=26.8
Q ss_pred CHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCH-HHHHHHHH
Q 012564 312 TVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSS-SSVDNAIQ 357 (460)
Q Consensus 312 te~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~-e~a~~Al~ 357 (460)
+.+.|++.|..|..++ +..........++++|+|... .....|+.
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCChHHHHHHHH
Confidence 5588999999998876 444454443589999999964 44555544
No 186
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=46.42 E-value=3.2 Score=41.97 Aligned_cols=63 Identities=11% Similarity=0.096 Sum_probs=50.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHCCCCCC
Q 012564 300 HSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQASPITIG 364 (460)
Q Consensus 300 ~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~~~~i~ 364 (460)
++|+|++|...+...++-++|..+|.|.+..+--.. ...++-|+|....+...||..++.++.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~--~s~~c~~sf~~qts~~halr~~gre~k 214 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTASKS--RSSSCSHSFRKQTSSKHALRSHGRERK 214 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccC--CCcchhhhHhhhhhHHHHHHhcchhhh
Confidence 789999999999999999999999999875441111 245667999999999999988876654
No 187
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=46.36 E-value=33 Score=36.47 Aligned_cols=77 Identities=14% Similarity=0.157 Sum_probs=48.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHh-hcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCC---C-CeEEEE
Q 012564 299 GHSIYIRNLPDTMTVASLEVEF-KKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITI---G-GQEAFV 370 (460)
Q Consensus 299 ~~~lfV~nLp~~vte~~L~~~F-~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i---~-gr~i~V 370 (460)
.+++-|+|++..-|-..|.+.- ...|.-..+.+.+|-.. ..|||||.|.+.+++....++. +..+ + .+.+.|
T Consensus 388 rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~i 467 (549)
T KOG4660|consen 388 RTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASI 467 (549)
T ss_pred hhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeee
Confidence 3556666666655555544443 23454445555555333 5899999999999998888877 5543 3 345566
Q ss_pred Eeccc
Q 012564 371 EKKKK 375 (460)
Q Consensus 371 ~~~~~ 375 (460)
.+++-
T Consensus 468 tYArI 472 (549)
T KOG4660|consen 468 TYARI 472 (549)
T ss_pred ehhhh
Confidence 66653
No 188
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=39.57 E-value=38 Score=33.14 Aligned_cols=11 Identities=18% Similarity=0.365 Sum_probs=6.7
Q ss_pred HHHHHHHHhcC
Q 012564 58 MEGINQKILSL 68 (460)
Q Consensus 58 ~~~I~~~~~~l 68 (460)
+.++..++..|
T Consensus 48 ~~~Leq~l~~L 58 (271)
T COG1512 48 RGALEQQLADL 58 (271)
T ss_pred HHHHHHHHHHH
Confidence 45666666655
No 189
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=39.45 E-value=1.8e+02 Score=29.03 Aligned_cols=53 Identities=9% Similarity=0.084 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC
Q 012564 13 VVGNAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL 68 (460)
Q Consensus 13 ~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l 68 (460)
+.-...|.+||..|+ .+.+.|..++.++..+..... ...+.|.++|..++..+
T Consensus 214 ~~~~~~v~~~~~A~~~gD~~~l~~lla~Dv~~~~p~~---~~~~~G~~~v~~~~~~~ 267 (339)
T PRK08241 214 PEERALLARYVAAFEAYDVDALVALLTEDATWSMPPF---PLWYRGRDAIAAFLAGQ 267 (339)
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHhcCCEEEEcCCC---CCcccCHHHHHHHHHhh
Confidence 556677999999998 578899999999988876543 22588999999999875
No 190
>smart00593 RUN domain involved in Ras-like GTPase signaling.
Probab=39.05 E-value=30 Score=25.68 Aligned_cols=45 Identities=20% Similarity=0.421 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhccCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcCC
Q 012564 16 NAFVEQYYHILHSTPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLD 69 (460)
Q Consensus 16 ~~Fv~~YY~~l~~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l~ 69 (460)
..-+.+|.+.|..+.+.+.+||.+.|.|.-.+ +...+...|..|.
T Consensus 11 e~~L~~~l~~l~~~~~~~~~~Y~~~A~l~~~~---------~~~~l~~~L~~L~ 55 (64)
T smart00593 11 EKLLSSWLNLLLSDEELLSKYYEPWAFLRDPE---------EGEQLLGLLVGLS 55 (64)
T ss_pred HhHHHHHHHHHHhChHHHHHhCCCCceeeChh---------HHHHHHHHHhCcc
Confidence 34467899999999999999999999885322 4566666676663
No 191
>COG4907 Predicted membrane protein [Function unknown]
Probab=38.90 E-value=56 Score=34.17 Aligned_cols=36 Identities=28% Similarity=0.309 Sum_probs=22.1
Q ss_pred EEEEEEEEcCCCCcccEEEeeeeeecCCcEEEEccEEEE
Q 012564 92 VLVTGCLTGKDNLRRKFAQSFFLAPQDNGYFVLNDVFRY 130 (460)
Q Consensus 92 i~V~G~~~~~~~~~~~F~q~F~L~~~~~~y~v~nDifr~ 130 (460)
|--.|.+....+..+-| |++-.....|+|+||+=.|
T Consensus 105 v~~ig~~~~~~~e~~tf---~~vy~~~~aikV~ndV~~f 140 (595)
T COG4907 105 VYRIGLYSKNYNEVRTF---KFVYTLPEAIKVYNDVAQF 140 (595)
T ss_pred EEEeccccCCCccceEE---EeeeeccceEEEechHHHh
Confidence 55556665554444444 2333456799999998644
No 192
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.19 E-value=80 Score=31.35 Aligned_cols=6 Identities=67% Similarity=1.331 Sum_probs=2.4
Q ss_pred CCCCCC
Q 012564 431 GEGYPR 436 (460)
Q Consensus 431 Ggg~~~ 436 (460)
|+||.+
T Consensus 90 GgGyN~ 95 (362)
T KOG3875|consen 90 GGGYNR 95 (362)
T ss_pred Cccccc
Confidence 334443
No 193
>COG3631 Ketosteroid isomerase-related protein [General function prediction only]
Probab=36.30 E-value=2.3e+02 Score=24.50 Aligned_cols=70 Identities=11% Similarity=0.131 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCc-ceeeccHHHHHHHHhcCC--CCcceEEEeeeeeee
Q 012564 15 GNAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGV-MTSVTTMEGINQKILSLD--YKNYKAEIKTADAQN 84 (460)
Q Consensus 15 g~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~-~~~~~g~~~I~~~~~~l~--~~~~~~~i~s~d~q~ 84 (460)
.+.-|+.||..|. ..-+.|..++.++-...+.+.+-. .+...|.+.+...+..++ +..+.+.+..+.+.-
T Consensus 6 ~~~~v~~~f~a~~~GD~~~~~~l~a~D~v~~~p~~~~~~~~~~~g~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 79 (133)
T COG3631 6 NTDLVRRYFAALSRGDLDGLLALLAEDVVWEVPGTPPLSGTFRGGVAIRRDVFALLPRLIEDGRFTVETVYVSG 79 (133)
T ss_pred hhhHHHHHHHHHhcCCHHHHHhhccCceEEEeeCCCCCccccccchhhhhHHhhhChhhcccccccceEEEEcC
Confidence 4567899999998 567788888999988887775422 334446666677777664 445666666666554
No 194
>PF15601 Imm42: Immunity protein 42
Probab=34.89 E-value=13 Score=32.40 Aligned_cols=67 Identities=12% Similarity=0.244 Sum_probs=46.0
Q ss_pred HHHHHHHHHhc----------cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcCCCCcceEEEeeeeeeeeC
Q 012564 17 AFVEQYYHILH----------STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLDYKNYKAEIKTADAQNSH 86 (460)
Q Consensus 17 ~Fv~~YY~~l~----------~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~s~d~q~s~ 86 (460)
.|+.-||.++. .-|-.+.+||...=.. .+- .....=+++|.+.|..++..++...|..++.||.+
T Consensus 16 dfl~sFFsti~~~lE~~~wGskfP~Lm~~LY~g~L~~--~~~---~~A~~eL~~I~~~l~~~~p~~ViWD~~dl~~~ppW 90 (134)
T PF15601_consen 16 DFLHSFFSTISYRLENEGWGSKFPLLMNELYRGYLRY--EEL---EKALKELEEIRKELKKFPPSEVIWDIEDLSKQPPW 90 (134)
T ss_pred HHHHHHHHHHHHHhhccCCCCcchHHHHHHHcCCCCH--HHH---HHHHHHHHHHHHHHhcCChhhheechhhcccCCCC
Confidence 46666666665 3455677777654322 211 12344588999999999999888889999999988
Q ss_pred CC
Q 012564 87 KE 88 (460)
Q Consensus 87 ~~ 88 (460)
++
T Consensus 91 g~ 92 (134)
T PF15601_consen 91 GD 92 (134)
T ss_pred cc
Confidence 54
No 195
>COG4907 Predicted membrane protein [Function unknown]
Probab=34.15 E-value=36 Score=35.52 Aligned_cols=21 Identities=5% Similarity=0.191 Sum_probs=10.1
Q ss_pred eeeecCCcEEEEccEEEEecC
Q 012564 113 FLAPQDNGYFVLNDVFRYVDD 133 (460)
Q Consensus 113 ~L~~~~~~y~v~nDifr~~~~ 133 (460)
-..+.+.+|+-.-|++.+-++
T Consensus 97 sv~d~g~gv~~ig~~~~~~~e 117 (595)
T COG4907 97 SVTDEGDGVYRIGLYSKNYNE 117 (595)
T ss_pred eeccccceEEEeccccCCCcc
Confidence 333444455555555544443
No 196
>PF08863 YolD: YolD-like protein; InterPro: IPR014962 These proteins are functionally uncharacterised. However it has been predicted that these proteins are functionally equivalent to the UmuD subunit of polymerase V from Gram-negative bacteria [].
Probab=33.27 E-value=73 Score=25.09 Aligned_cols=73 Identities=19% Similarity=0.287 Sum_probs=45.0
Q ss_pred CcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcCCCCcceEEEeeeeeeeeCCCcEEEEEEEEEEcCCCCcccE
Q 012564 29 TPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLDYKNYKAEIKTADAQNSHKEGVTVLVTGCLTGKDNLRRKF 108 (460)
Q Consensus 29 ~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~s~d~q~s~~~gili~V~G~~~~~~~~~~~F 108 (460)
+.+.|.+++.+...+....- .-.-+++|+.+|...--.++.+.|+.++ +|-+..++|.|..=+..
T Consensus 4 H~e~L~~~~~e~~k~~kp~L-----de~~leei~~~l~~a~~~~~~v~ity~~------~g~~~~~~G~I~~id~~---- 68 (92)
T PF08863_consen 4 HKEALRELIKEQNKVEKPEL-----DEQQLEEINEKLSEAYQENQPVTITYYE------DGYYQSVTGTIHKIDEI---- 68 (92)
T ss_pred HHHHHHHHHHHhcccCCCCC-----cHHHHHHHHHHHHHHhcCCCEEEEEEEE------CCeeEEEEEEEEEEcCC----
Confidence 34556666665555543332 2234788888887432235678887776 77999999999764422
Q ss_pred EEeeeeee
Q 012564 109 AQSFFLAP 116 (460)
Q Consensus 109 ~q~F~L~~ 116 (460)
.+++.|.-
T Consensus 69 ~~~l~~~~ 76 (92)
T PF08863_consen 69 NRTLKLKD 76 (92)
T ss_pred CCEEEEEe
Confidence 34455544
No 197
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.85 E-value=73 Score=32.66 Aligned_cols=55 Identities=20% Similarity=0.317 Sum_probs=42.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHH
Q 012564 300 HSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQA 358 (460)
Q Consensus 300 ~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~ 358 (460)
+.|=|-++|.....++|-.+|..|+. +.++|++-.++ .+|-.|.+...|..||-.
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~-kgfdIkWvDdt---halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQN-KGFDIKWVDDT---HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhc-CCceeEEeecc---eeEEeecchHHHHHHhhc
Confidence 55777788888888999999999975 34556554433 699999999988888754
No 198
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=32.41 E-value=94 Score=34.81 Aligned_cols=15 Identities=20% Similarity=0.233 Sum_probs=11.0
Q ss_pred HHHHHhccCcchhcc
Q 012564 21 QYYHILHSTPELVFR 35 (460)
Q Consensus 21 ~YY~~l~~~p~~l~~ 35 (460)
|+.+.|.++|++|.-
T Consensus 310 q~INal~t~p~dldf 324 (1102)
T KOG1924|consen 310 QFINALVTSPSDLDF 324 (1102)
T ss_pred HHHHHhcCCHHHhhH
Confidence 477888888887643
No 199
>KOG3172 consensus Small nuclear ribonucleoprotein Sm D3 [RNA processing and modification]
Probab=32.22 E-value=65 Score=26.58 Aligned_cols=9 Identities=22% Similarity=0.294 Sum_probs=3.9
Q ss_pred CCCCCeEEE
Q 012564 361 ITIGGQEAF 369 (460)
Q Consensus 361 ~~i~gr~i~ 369 (460)
..|.|..|+
T Consensus 61 V~IRGS~IR 69 (119)
T KOG3172|consen 61 VFIRGSKIR 69 (119)
T ss_pred EEEecCeEE
Confidence 334444444
No 200
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=31.97 E-value=2.4e+02 Score=21.82 Aligned_cols=62 Identities=16% Similarity=0.216 Sum_probs=44.7
Q ss_pred EEEcCCCCCCCHHHHHHHhh-------cCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHCCCCC
Q 012564 302 IYIRNLPDTMTVASLEVEFK-------KFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQASPITI 363 (460)
Q Consensus 302 lfV~nLp~~vte~~L~~~F~-------~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~~~~i 363 (460)
|-..+||..+|.++|.+... ++..|..+.-.+....++.|++.+=.+.+.+.++-+..|+-.
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~aG~p~ 71 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHARRAGLPA 71 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHHHcCCCc
Confidence 44668888899988877653 444566666666666678888888889998888877655443
No 201
>PF05941 Chordopox_A20R: Chordopoxvirus A20R protein; InterPro: IPR010267 This family consists of several Chordopoxvirus A20R proteins. The A20R protein is required for DNA replication, is associated with the processive form of the viral DNA polymerase, and directly interacts with the viral proteins encoded by the D4R, D5R, and H5R open reading frames. A20R may contribute to the assembly or stability of the multiprotein DNA replication complex [].
Probab=31.96 E-value=1.4e+02 Score=29.94 Aligned_cols=100 Identities=15% Similarity=0.168 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhccCcchh-cccccCCceEEeeCCCCcceeeccHHHHHHHHhcCCCCcceEEEeeeeeeeeCCCc---EE
Q 012564 16 NAFVEQYYHILHSTPELV-FRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLDYKNYKAEIKTADAQNSHKEG---VT 91 (460)
Q Consensus 16 ~~Fv~~YY~~l~~~p~~l-~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~s~d~q~s~~~g---il 91 (460)
..|-+.||..|+..=... ..||-..=.+...|. -.-.|.++.. .+-..|++|+--...+|. .|
T Consensus 173 ~~F~~~dY~~l~~~f~~~~~~f~~~s~c~ik~G~--------~~R~viDf~~-----~~y~~Vk~I~Le~i~~n~~~P~i 239 (334)
T PF05941_consen 173 TIFTEEDYDALEAYFLKIMDGFYINSLCCIKEGV--------SRRNVIDFYK-----KEYVCVKSIELEQIGDNRFLPKI 239 (334)
T ss_pred cccchhHHHHHHHHHHhhhhcccceeEEEEecCc--------chhhhhhhcc-----cceEEEEEEEEEEecCCeeeeEE
Confidence 579999999999766655 556655547777775 2334444432 446778888877766664 44
Q ss_pred EEEEEEEE-cCC-C---CcccEEEeeeeeecCCcEEEEccEE
Q 012564 92 VLVTGCLT-GKD-N---LRRKFAQSFFLAPQDNGYFVLNDVF 128 (460)
Q Consensus 92 i~V~G~~~-~~~-~---~~~~F~q~F~L~~~~~~y~v~nDif 128 (460)
|+-.|... .++ + ..|-+.-+|+....-+.|.||.|--
T Consensus 240 iT~~g~~vlvrdv~hLi~sr~~vgsFV~Vkkk~~~~iL~d~~ 281 (334)
T PF05941_consen 240 ITKSGDRVLVRDVDHLIRSRARVGSFVVVKKKKNFLILVDNA 281 (334)
T ss_pred EeecCCEEEEcchhHHhHhhhccceEEEEEEeceEEEEccCc
Confidence 55555543 344 2 2477899999998888899887644
No 202
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=31.92 E-value=94 Score=23.24 Aligned_cols=19 Identities=16% Similarity=0.242 Sum_probs=15.7
Q ss_pred HHHHHHhhcCCCeeEEEEE
Q 012564 314 ASLEVEFKKFGPVKQGGIQ 332 (460)
Q Consensus 314 ~~L~~~F~~~G~v~~~~i~ 332 (460)
.+||++|+.+|.|.-+.|.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999999865553
No 203
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=31.70 E-value=2.1e+02 Score=30.00 Aligned_cols=67 Identities=13% Similarity=0.114 Sum_probs=53.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcC-CCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCC
Q 012564 299 GHSIYIRNLPDTMTVASLEVEFKKF-GPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGG 365 (460)
Q Consensus 299 ~~~lfV~nLp~~vte~~L~~~F~~~-G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~g 365 (460)
.+.|+|=-+|..++-.||-.|...| -.|..++|+.+....+-...|.|.+.++|..-.+.. |..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 7889999999999999999998655 457777776644435666899999999999887777 766653
No 204
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=31.63 E-value=1.7e+02 Score=20.87 Aligned_cols=57 Identities=12% Similarity=0.110 Sum_probs=39.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCH----HHHHHHHHHCCC
Q 012564 301 SIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSS----SSVDNAIQASPI 361 (460)
Q Consensus 301 ~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~----e~a~~Al~~~~~ 361 (460)
++.|.|+.-.--...|++.+.+.-.|..+.+.+ ..+-.-|.|... +...++|+..|+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~----~~~~v~v~~~~~~~~~~~i~~~i~~~Gy 61 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDL----ETKTVTVTYDPDKTSIEKIIEAIEKAGY 61 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEET----TTTEEEEEESTTTSCHHHHHHHHHHTTS
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEEC----CCCEEEEEEecCCCCHHHHHHHHHHhCc
Confidence 466777765555678999999888888866622 234577888743 677777777654
No 205
>PF12287 Caprin-1_C: Cytoplasmic activation/proliferation-associated protein-1 C term; InterPro: IPR022070 This family of proteins is found in eukaryotes. Proteins in this family are typically between 343 and 708 amino acids in length. This family is the C-terminal region of caprin-1. Caprin-1 is a protein involved in regulating cellular proliferation. In mutated phenotypes, the G1 phase of the cell cycle is greatly lengthened, impairing normal proliferation. The C-terminal region of caprin-1 contains RGG motifs which are characteristic of RNA binding domains. It is possible that caprin-1 functions through an RNA binding mechanism.
Probab=31.36 E-value=94 Score=30.77 Aligned_cols=7 Identities=57% Similarity=1.113 Sum_probs=2.8
Q ss_pred CCCCCCC
Q 012564 439 GRGGRSG 445 (460)
Q Consensus 439 grg~r~~ 445 (460)
-||+.-|
T Consensus 308 KRG~~~g 314 (316)
T PF12287_consen 308 KRGGTQG 314 (316)
T ss_pred hccCCCC
Confidence 3444333
No 206
>PF12642 TpcC: Conjugative transposon protein TcpC; InterPro: IPR024735 This family of bacterial proteins are annotated as conjugative transposon protein TcpC. The transfer clostridial plasmid (tcp) locus is part of some conjugative antibiotic resistance and virulence plasmids. TcpC was one of five genes whose products had low-level sequence identity to Tn916 proteins, having similarity to ORF13 homologues from Tn916, Tn5397, and CW459tet [].; PDB: 3UB1_A.
Probab=29.78 E-value=2.6e+02 Score=26.17 Aligned_cols=88 Identities=15% Similarity=0.243 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhccCc-chhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcCCCCcceEEEeeeeeeeeCCCcEE
Q 012564 13 VVGNAFVEQYYHILHSTP-ELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLDYKNYKAEIKTADAQNSHKEGVT 91 (460)
Q Consensus 13 ~vg~~Fv~~YY~~l~~~p-~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~s~d~q~s~~~gil 91 (460)
.--..|++.|++..-..- ++|.+|..+.+.+...+. + +. ..+|..+..-...++ ..
T Consensus 140 ~~i~~fl~~Ff~aY~t~~~~~L~~y~~~~~~~~l~~~----------------~----~~--~~~v~~~~~~~~~~~-~~ 196 (232)
T PF12642_consen 140 KPIEEFLEQFFKAYLTGNQGDLSYYMKPGAIIGLNGA----------------P----YK--FVKVDDIKVYKTKDK-GR 196 (232)
T ss_dssp HHHHHHHHHHHHHHHHS-HHHHHTTB-TT-----------------------------SE--EEEEEEEEEEEEETT-EE
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHhcCCcccccCCC----------------c----eE--EEeeeeEEeecCCCC-cE
Confidence 455789999999886554 889988887776522221 1 11 255555555554444 33
Q ss_pred EEEEEEEEcCCCC-cccEEEeeeeee--cCCcEEEE
Q 012564 92 VLVTGCLTGKDNL-RRKFAQSFFLAP--QDNGYFVL 124 (460)
Q Consensus 92 i~V~G~~~~~~~~-~~~F~q~F~L~~--~~~~y~v~ 124 (460)
+.|. +++..+.. ....+|+|.|.- .+++|||.
T Consensus 197 ~~v~-tVt~~~~~t~~~~~~~y~LtL~~~~~~w~V~ 231 (232)
T PF12642_consen 197 VVVQ-TVTFKDPGTKATLTQQYTLTLTKRGGRWYVT 231 (232)
T ss_dssp EEE---EEEEEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred EEEE-EEEEEECCCCcEEEEEEEEEEEEcCCEEEEe
Confidence 3333 44443322 455677776654 46799985
No 207
>PF02759 RUN: RUN domain; InterPro: IPR004012 This domain is present in several proteins that are linked to the functions of GTPases in the Rap and Rab families. They could therefore play important roles in multiple Ras-like GTPase signalling pathways.; PDB: 3CWZ_B 2CXF_A 2DWK_A 2DWG_A 2CXL_A.
Probab=28.54 E-value=27 Score=29.51 Aligned_cols=40 Identities=23% Similarity=0.460 Sum_probs=29.1
Q ss_pred HHHHHHhccCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC
Q 012564 20 EQYYHILHSTPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL 68 (460)
Q Consensus 20 ~~YY~~l~~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l 68 (460)
.+|.+.|..+++.|.+||.+.|.|...+ ..+.|...|..|
T Consensus 83 ~~~l~~l~~~~~~l~~~Y~~~A~l~~~~---------~~~~l~~~L~~L 122 (133)
T PF02759_consen 83 SSWLQLLLSDPKLLRKYYEPWAFLRDPE---------LREQLLSLLSGL 122 (133)
T ss_dssp HHHHHHHCTTHHHHCCCB-TTSCTTSHH---------HHHHHHHHHGGG
T ss_pred HHHHHHHHhcchHHcCccCCcceeeCcc---------hHHHHHHHHhhh
Confidence 4688889999999999999999885443 245566666554
No 208
>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=26.92 E-value=4.1e+02 Score=26.14 Aligned_cols=52 Identities=10% Similarity=0.117 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC
Q 012564 14 VGNAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL 68 (460)
Q Consensus 14 vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l 68 (460)
.-..-|++||..++ .+.+.|..++.++.++...-. ...+.|.+.|...+..+
T Consensus 205 ~~~~~v~~~~~a~~~gD~~~l~~Lla~Dv~~~~p~~---~~~~~G~~~v~~~~~~~ 257 (324)
T TIGR02960 205 EEQDLLERYIAAFESYDLDALTALLHEDAIWEMPPY---TLWYQGRPAIVGFIHTV 257 (324)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHhcCCeEEEcCCC---CcceeCHHHHHHHHHHh
Confidence 34677999999998 688999999999998875532 22688999999999877
No 209
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=26.65 E-value=2.3e+02 Score=22.15 Aligned_cols=57 Identities=11% Similarity=0.049 Sum_probs=37.1
Q ss_pred EcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHCC
Q 012564 304 IRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQASP 360 (460)
Q Consensus 304 V~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~~ 360 (460)
+=.++.+.+..+|+..++++=.|+-..|...... +..-|||.+..-..|...-..+|
T Consensus 18 ~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~g 75 (77)
T TIGR03636 18 TFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRLG 75 (77)
T ss_pred EEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhhc
Confidence 3357888999999999976433443334332222 44459999998887777655544
No 210
>PF14893 PNMA: PNMA
Probab=26.14 E-value=46 Score=33.62 Aligned_cols=72 Identities=19% Similarity=0.236 Sum_probs=42.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhh----cCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHCCCCCC--CeEEEEEe
Q 012564 299 GHSIYIRNLPDTMTVASLEVEFK----KFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQASPITIG--GQEAFVEK 372 (460)
Q Consensus 299 ~~~lfV~nLp~~vte~~L~~~F~----~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~~~~i~--gr~i~V~~ 372 (460)
.+.|.|.+||.+|++++|++.+. .+|...-..-++++..+..-++|+|...-+... .+.+|- |-.-+|-+
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~n~~~----iP~~i~g~gg~W~Vv~ 93 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDVNYSL----IPREIPGKGGPWRVVF 93 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccccchhh----CchhcCCCCCceEEEe
Confidence 46789999999999999888764 455443222222333344568999986443221 266663 33445444
Q ss_pred cc
Q 012564 373 KK 374 (460)
Q Consensus 373 ~~ 374 (460)
..
T Consensus 94 ~p 95 (331)
T PF14893_consen 94 KP 95 (331)
T ss_pred cC
Confidence 43
No 211
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=25.38 E-value=1.6e+02 Score=31.55 Aligned_cols=9 Identities=33% Similarity=0.224 Sum_probs=4.7
Q ss_pred ccEEEeeee
Q 012564 106 RKFAQSFFL 114 (460)
Q Consensus 106 ~~F~q~F~L 114 (460)
+.|.|-|.=
T Consensus 165 ~~l~qk~eD 173 (648)
T KOG2295|consen 165 RALYQKFED 173 (648)
T ss_pred HHHHHHhhh
Confidence 356665543
No 212
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=25.34 E-value=2.2e+02 Score=22.58 Aligned_cols=55 Identities=9% Similarity=0.054 Sum_probs=36.7
Q ss_pred CCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHCC
Q 012564 306 NLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQASP 360 (460)
Q Consensus 306 nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~~ 360 (460)
.++...+..+|++.++++=.|+-..|...+.. +..-|||.|..-..|......+|
T Consensus 27 ~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~kig 82 (84)
T PRK14548 27 IVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRLG 82 (84)
T ss_pred EECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhhc
Confidence 36788999999999986433433333322222 44459999999888887766554
No 213
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=24.69 E-value=73 Score=25.61 Aligned_cols=31 Identities=10% Similarity=0.279 Sum_probs=24.8
Q ss_pred EEEEEcCHHHHHHHHHHC--CCCCCCeEEEEEe
Q 012564 342 GFVEFQSSSSVDNAIQAS--PITIGGQEAFVEK 372 (460)
Q Consensus 342 aFV~F~~~e~a~~Al~~~--~~~i~gr~i~V~~ 372 (460)
|.|+|.+..-|++.+..- ...+++..+.|..
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v 33 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKV 33 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEE
Confidence 689999999999998876 5667777776653
No 214
>PRK07772 single-stranded DNA-binding protein; Provisional
Probab=24.34 E-value=1.7e+02 Score=27.03 Aligned_cols=9 Identities=22% Similarity=0.231 Sum_probs=4.8
Q ss_pred cEEEEcCCC
Q 012564 300 HSIYIRNLP 308 (460)
Q Consensus 300 ~~lfV~nLp 308 (460)
...+|+||-
T Consensus 6 ~VtLiGrL~ 14 (186)
T PRK07772 6 TITVVGNLT 14 (186)
T ss_pred EEEEEEEeC
Confidence 334566664
No 215
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.22 E-value=3.3e+02 Score=24.18 Aligned_cols=54 Identities=17% Similarity=0.289 Sum_probs=38.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcC---CCeeEEEEEEeCCC-----------Cce-EEEEEEcCHHHH
Q 012564 299 GHSIYIRNLPDTMTVASLEVEFKKF---GPVKQGGIQVRHNK-----------GYC-FGFVEFQSSSSV 352 (460)
Q Consensus 299 ~~~lfV~nLp~~vte~~L~~~F~~~---G~v~~~~i~~~~~~-----------g~g-~aFV~F~~~e~a 352 (460)
..+||+.-+...+++++.++..++- ++++.+.+-+.+++ ++. |-+|.|++-...
T Consensus 87 ~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~l 155 (161)
T COG5353 87 DGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKEL 155 (161)
T ss_pred CCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchhh
Confidence 3789999999999999999999765 44555544333222 344 889999986544
No 216
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=24.18 E-value=2.3e+02 Score=23.53 Aligned_cols=44 Identities=16% Similarity=0.290 Sum_probs=33.3
Q ss_pred HHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHH
Q 012564 314 ASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQA 358 (460)
Q Consensus 314 ~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~ 358 (460)
.+|.+++++.| |..-.|.++..+..-||++++.|.+..-++|..
T Consensus 27 PE~~a~lk~ag-i~nYSIfLde~~n~lFgy~E~~d~~a~m~~~a~ 70 (105)
T COG3254 27 PELLALLKEAG-IRNYSIFLDEEENLLFGYWEYEDFEADMAKMAE 70 (105)
T ss_pred HHHHHHHHHcC-CceeEEEecCCcccEEEEEEEcChHHHHHHHhC
Confidence 46778889998 566668788766788999999977666666544
No 217
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=23.18 E-value=4.9e+02 Score=29.10 Aligned_cols=22 Identities=0% Similarity=-0.115 Sum_probs=13.7
Q ss_pred CCCCCCHHHHHHHhhcCCCeeE
Q 012564 307 LPDTMTVASLEVEFKKFGPVKQ 328 (460)
Q Consensus 307 Lp~~vte~~L~~~F~~~G~v~~ 328 (460)
.-|++.++|.+-+....=.+.+
T Consensus 7 ~rWDW~~ED~K~VvqRVL~L~S 28 (828)
T PF04094_consen 7 ERWDWGPEDFKMVVQRVLNLDS 28 (828)
T ss_pred CcCCCCHHHHHHHHHHHhccch
Confidence 4577788887777655433433
No 218
>PF03791 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=22.98 E-value=41 Score=24.19 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhccCcchhccccc
Q 012564 16 NAFVEQYYHILHSTPELVFRFYQ 38 (460)
Q Consensus 16 ~~Fv~~YY~~l~~~p~~l~~fY~ 38 (460)
..|+.+|..+|.+-.+.|.+=+.
T Consensus 12 DqFMeaYc~~L~kykeeL~~p~~ 34 (52)
T PF03791_consen 12 DQFMEAYCDMLVKYKEELQRPFQ 34 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999987554
No 219
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=22.40 E-value=2.5e+02 Score=22.54 Aligned_cols=30 Identities=20% Similarity=0.201 Sum_probs=26.2
Q ss_pred CceEEeeCCCCcceeeccHHHHHHHHhcCC
Q 012564 40 SSVLSRPDSNGVMTSVTTMEGINQKILSLD 69 (460)
Q Consensus 40 ~S~l~~~~~~~~~~~~~g~~~I~~~~~~l~ 69 (460)
.=+|.|.|.+|...+++..+++...+.++.
T Consensus 47 ~ftlky~DeeGDlvtIssdeEL~~A~~~~~ 76 (87)
T cd06402 47 NFQLFWKDEEGDLVAFSSDEELVMALGSLN 76 (87)
T ss_pred cEEEEEECCCCCEEeecCHHHHHHHHHcCC
Confidence 337789999999889999999999999886
No 220
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=22.23 E-value=1e+02 Score=23.51 Aligned_cols=59 Identities=22% Similarity=0.255 Sum_probs=37.7
Q ss_pred HHHHHHhhcCC-CeeEEEEEEeCCCC--ceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEEecc
Q 012564 314 ASLEVEFKKFG-PVKQGGIQVRHNKG--YCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEKKK 374 (460)
Q Consensus 314 ~~L~~~F~~~G-~v~~~~i~~~~~~g--~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~~~~ 374 (460)
++|++.|...| .++.+..+..+++. ...-||+.....+....++ -..|++++|.||...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~Il~--ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKEILN--IKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcceEe--ehhhCCeeEEEecCc
Confidence 47888888887 56666666555542 4556788776543333211 356788999998654
No 221
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=21.78 E-value=1.5e+02 Score=22.48 Aligned_cols=60 Identities=25% Similarity=0.304 Sum_probs=36.8
Q ss_pred HHHHHHhhcCC-CeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEEeccc
Q 012564 314 ASLEVEFKKFG-PVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEKKKK 375 (460)
Q Consensus 314 ~~L~~~F~~~G-~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~~~~~ 375 (460)
++|++.|...| .|..+.-+..+.+ ....-||+++...+...++. =..|++..|+||..+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~~--Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIYK--IKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccceee--hHhhCCeEEEEecCCC
Confidence 56778887777 4555443344322 24567888887655333322 3467888899987653
No 222
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=21.12 E-value=3.7e+02 Score=26.20 Aligned_cols=54 Identities=17% Similarity=0.324 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCc----ceeeccHHHHHHHHhcC
Q 012564 14 VGNAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGV----MTSVTTMEGINQKILSL 68 (460)
Q Consensus 14 vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~----~~~~~g~~~I~~~~~~l 68 (460)
.....|+.|+..|. .+.+.|..+|.++..+...|. |. ...+.|.+.|..+|..+
T Consensus 172 ~~~~~v~~f~~A~~~gD~~~l~~Lla~Dv~~~~dgg-g~~~~~~~~~~G~~~v~~~l~~~ 230 (293)
T PRK09636 172 EGAELVEAFFAALASGDLDALVALLAPDVVLHADGG-GKVPTALRPIYGADKVARFFLGL 230 (293)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHhhCeEEEecCC-CccCCCCccccCHHHHHHHHHHH
Confidence 34678999999998 488999999999999875553 22 24578999999998765
Done!