Query 012564
Match_columns 460
No_of_seqs 479 out of 2979
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 11:54:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012564.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012564hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q90_A RAS GTPase-activating p 100.0 1.7E-38 6E-43 278.3 14.0 128 8-135 6-139 (140)
2 3ujm_A Rasputin; NTF2-like fol 100.0 4.3E-37 1.5E-41 262.5 12.2 117 10-131 2-120 (120)
3 1zo2_A NTF2, nuclear transport 100.0 2.3E-36 7.9E-41 261.2 14.8 123 5-132 5-128 (129)
4 1gy6_A Nuclear transport facto 100.0 2.8E-36 9.6E-41 260.0 14.2 123 8-135 4-126 (127)
5 1gy7_A Nuclear transport facto 100.0 5E-36 1.7E-40 257.7 14.4 119 10-133 4-124 (125)
6 2qiy_A UBP3-associated protein 100.0 9.2E-35 3.1E-39 259.0 13.4 129 8-136 8-152 (154)
7 3nv0_B NTF2-related export pro 100.0 3.4E-34 1.2E-38 253.7 14.5 116 10-132 32-154 (154)
8 1jkg_A P15; NTF2-like domain, 100.0 2.1E-32 7.1E-37 239.9 14.1 119 8-133 10-138 (140)
9 1jkg_B TAP; NTF2-like domain, 99.8 1.6E-20 5.4E-25 179.7 13.7 126 8-135 11-172 (250)
10 1of5_A MRNA export factor MEX6 99.8 1.1E-20 3.8E-25 176.0 10.1 124 8-133 7-203 (221)
11 1q40_B MEX67, mRNA export fact 99.8 2.6E-19 8.9E-24 166.6 12.3 126 8-135 10-211 (219)
12 3q2s_C Cleavage and polyadenyl 99.8 6.4E-19 2.2E-23 167.0 9.5 79 298-376 67-150 (229)
13 1h2v_Z 20 kDa nuclear CAP bind 99.7 4.9E-18 1.7E-22 151.1 11.9 81 297-377 37-120 (156)
14 4fxv_A ELAV-like protein 1; RN 99.7 1E-17 3.5E-22 137.7 10.8 81 296-376 16-99 (99)
15 1u6f_A Tcubp1, RNA-binding pro 99.7 2.4E-16 8.4E-21 137.2 17.7 81 296-376 39-122 (139)
16 4f25_A Polyadenylate-binding p 99.7 1.5E-16 5E-21 134.3 9.7 78 299-376 5-83 (115)
17 2cqi_A Nucleolysin TIAR; RNA r 99.7 5.4E-16 1.8E-20 127.8 12.3 83 294-376 10-93 (103)
18 2cq3_A RNA-binding protein 9; 99.7 9.8E-16 3.4E-20 126.3 13.3 83 295-377 11-94 (103)
19 1x5u_A Splicing factor 3B subu 99.7 7.3E-16 2.5E-20 127.4 12.5 82 296-377 12-96 (105)
20 1x4c_A Splicing factor, argini 99.7 8.5E-16 2.9E-20 128.0 12.5 77 297-378 13-95 (108)
21 2cq0_A Eukaryotic translation 99.7 9.6E-16 3.3E-20 126.3 12.6 83 295-377 11-96 (103)
22 3s8s_A Histone-lysine N-methyl 99.7 5.3E-16 1.8E-20 129.9 11.0 80 297-376 4-86 (110)
23 2cqd_A RNA-binding region cont 99.7 1.4E-15 4.8E-20 128.2 13.7 83 294-376 12-96 (116)
24 2d9p_A Polyadenylate-binding p 99.6 1E-15 3.4E-20 126.2 12.3 84 294-377 10-94 (103)
25 2dnz_A Probable RNA-binding pr 99.6 1E-15 3.5E-20 124.1 11.8 80 298-377 4-86 (95)
26 2dgo_A Cytotoxic granule-assoc 99.6 3.6E-15 1.2E-19 125.4 15.5 83 295-377 11-96 (115)
27 1whw_A Hypothetical protein ri 99.6 1.1E-15 3.7E-20 125.0 11.8 81 297-377 6-89 (99)
28 3ex7_B RNA-binding protein 8A; 99.6 4.2E-16 1.4E-20 133.3 9.7 82 296-377 19-103 (126)
29 2cpz_A CUG triplet repeat RNA- 99.6 1.1E-15 3.9E-20 128.5 12.2 82 296-377 22-106 (115)
30 2dgs_A DAZ-associated protein 99.6 1.7E-15 5.9E-20 123.8 12.7 82 296-377 7-90 (99)
31 2khc_A Testis-specific RNP-typ 99.6 1.9E-15 6.5E-20 127.7 13.3 80 295-374 36-118 (118)
32 2lxi_A RNA-binding protein 10; 99.6 1E-16 3.5E-21 129.5 5.2 79 299-377 1-84 (91)
33 2fy1_A RNA-binding motif prote 99.6 1.5E-15 5.2E-20 128.3 12.5 82 296-377 4-87 (116)
34 3nv0_A Nuclear RNA export fact 99.6 1.8E-15 6.2E-20 139.7 13.9 123 9-133 10-185 (205)
35 2dnm_A SRP46 splicing factor; 99.6 9E-16 3.1E-20 126.5 10.6 82 296-377 10-94 (103)
36 3pgw_S U1-70K; protein-RNA com 99.6 5E-15 1.7E-19 153.0 18.5 81 297-377 100-183 (437)
37 3s7r_A Heterogeneous nuclear r 99.6 1.4E-15 4.7E-20 121.3 10.8 79 295-373 7-87 (87)
38 2do4_A Squamous cell carcinoma 99.6 2.3E-15 7.7E-20 123.4 12.3 83 295-377 13-97 (100)
39 1x5s_A Cold-inducible RNA-bind 99.6 1.1E-15 3.8E-20 125.7 10.5 82 296-377 9-93 (102)
40 2cqb_A Peptidyl-prolyl CIS-tra 99.6 7.2E-16 2.5E-20 126.8 9.3 82 296-377 9-93 (102)
41 2dng_A Eukaryotic translation 99.6 3.2E-15 1.1E-19 123.2 12.9 80 296-377 12-94 (103)
42 1x5t_A Splicing factor 3B subu 99.6 1.1E-15 3.9E-20 124.1 10.0 80 298-377 4-87 (96)
43 2cpf_A RNA binding motif prote 99.6 1.8E-15 6E-20 123.5 11.2 81 297-377 3-89 (98)
44 1x4a_A Splicing factor, argini 99.6 3E-15 1E-19 124.7 12.7 81 296-377 19-100 (109)
45 2dgx_A KIAA0430 protein; RRM d 99.6 1.1E-15 3.7E-20 124.6 9.6 80 297-377 7-91 (96)
46 1wi8_A EIF-4B, eukaryotic tran 99.6 2.2E-15 7.6E-20 124.4 11.4 80 296-377 12-95 (104)
47 2dnh_A Bruno-like 5, RNA bindi 99.6 4.4E-15 1.5E-19 122.7 13.1 82 296-377 12-98 (105)
48 2cqg_A TDP-43, TAR DNA-binding 99.6 5.2E-15 1.8E-19 121.9 13.4 82 295-377 11-94 (103)
49 2dh8_A DAZ-associated protein 99.6 2.1E-15 7.1E-20 124.7 11.0 83 295-377 12-96 (105)
50 3md1_A Nuclear and cytoplasmic 99.6 2.1E-15 7.2E-20 119.0 10.4 78 299-376 1-81 (83)
51 2dhg_A TRNA selenocysteine ass 99.6 3.1E-15 1.1E-19 123.4 11.8 81 297-377 7-91 (104)
52 2err_A Ataxin-2-binding protei 99.6 9.1E-16 3.1E-20 128.1 8.6 81 296-376 26-107 (109)
53 2dgp_A Bruno-like 4, RNA bindi 99.6 2E-15 7E-20 125.0 10.6 83 295-377 9-97 (106)
54 3bs9_A Nucleolysin TIA-1 isofo 99.6 1.8E-15 6.3E-20 120.4 9.9 79 298-376 5-86 (87)
55 2dgv_A HnRNP M, heterogeneous 99.6 2.6E-15 8.8E-20 121.0 10.8 81 297-377 6-87 (92)
56 2cqc_A Arginine/serine-rich sp 99.6 2.6E-15 8.7E-20 121.7 10.7 80 296-375 12-94 (95)
57 2cph_A RNA binding motif prote 99.6 3.8E-15 1.3E-19 123.5 11.9 83 295-377 11-98 (107)
58 3mdf_A Peptidyl-prolyl CIS-tra 99.6 2.1E-15 7.2E-20 119.5 9.7 78 297-374 5-85 (85)
59 2e5h_A Zinc finger CCHC-type a 99.6 2.9E-15 9.9E-20 121.2 10.7 79 296-374 13-94 (94)
60 2cq1_A PTB-like protein L; RRM 99.6 2.6E-15 9E-20 123.6 10.5 78 295-376 11-91 (101)
61 1sjq_A Polypyrimidine tract-bi 99.6 8.3E-16 2.8E-20 127.1 7.4 76 297-376 14-92 (105)
62 3n9u_C Cleavage and polyadenyl 99.6 2.2E-15 7.4E-20 134.2 10.6 80 297-376 53-137 (156)
63 1p27_B RNA-binding protein 8A; 99.6 3.2E-15 1.1E-19 123.8 10.9 81 296-376 20-103 (106)
64 3p5t_L Cleavage and polyadenyl 99.6 7.6E-16 2.6E-20 123.9 6.8 77 300-376 2-83 (90)
65 2dgu_A Heterogeneous nuclear r 99.6 4.8E-15 1.6E-19 122.2 11.9 75 297-377 9-84 (103)
66 1x4b_A Heterogeneous nuclear r 99.6 2.2E-15 7.6E-20 127.0 10.0 82 296-377 24-107 (116)
67 1wex_A Hypothetical protein (r 99.6 7.7E-15 2.6E-19 121.5 13.0 77 296-376 12-91 (104)
68 2jrs_A RNA-binding protein 39; 99.6 5.1E-15 1.7E-19 123.4 12.0 81 296-376 23-106 (108)
69 2div_A TRNA selenocysteine ass 99.6 3.3E-15 1.1E-19 122.1 10.6 80 297-376 7-94 (99)
70 2la6_A RNA-binding protein FUS 99.6 4.7E-15 1.6E-19 121.3 11.4 78 297-374 11-99 (99)
71 1x4h_A RNA-binding protein 28; 99.6 4.9E-15 1.7E-19 123.6 11.7 82 296-377 12-102 (111)
72 2cpe_A RNA-binding protein EWS 99.6 3E-15 1E-19 125.4 10.4 83 295-377 11-104 (113)
73 2cqp_A RNA-binding protein 12; 99.6 3.7E-15 1.2E-19 121.6 10.5 81 296-376 12-95 (98)
74 2dnq_A RNA-binding protein 4B; 99.6 5.7E-15 1.9E-19 118.6 11.3 75 297-377 6-81 (90)
75 3ucg_A Polyadenylate-binding p 99.6 3.7E-15 1.3E-19 119.1 10.2 80 298-378 5-87 (89)
76 3r27_A HnRNP L, heterogeneous 99.6 3.2E-15 1.1E-19 122.4 9.8 78 295-376 17-97 (100)
77 2lkz_A RNA-binding protein 5; 99.6 1.6E-15 5.4E-20 123.6 7.8 80 296-375 6-94 (95)
78 2do0_A HnRNP M, heterogeneous 99.6 1.6E-14 5.6E-19 121.1 14.4 82 295-376 11-94 (114)
79 2dgt_A RNA-binding protein 30; 99.6 7.8E-15 2.7E-19 118.3 11.5 77 295-377 6-83 (92)
80 2rs2_A Musashi-1, RNA-binding 99.6 3.2E-15 1.1E-19 124.9 9.4 81 296-376 22-104 (109)
81 2jwn_A Embryonic polyadenylate 99.6 6.1E-15 2.1E-19 125.7 11.3 82 296-378 33-117 (124)
82 2x1f_A MRNA 3'-END-processing 99.6 3.5E-15 1.2E-19 121.4 9.3 78 299-376 2-82 (96)
83 1x4d_A Matrin 3; structural ge 99.6 4.6E-15 1.6E-19 122.3 10.0 77 297-377 13-93 (102)
84 2ywk_A Putative RNA-binding pr 99.6 3.4E-15 1.2E-19 121.0 9.2 79 296-374 13-93 (95)
85 2ad9_A Polypyrimidine tract-bi 99.6 4.2E-15 1.5E-19 125.8 9.8 78 295-376 27-107 (119)
86 2kxn_B Transformer-2 protein h 99.6 3.9E-15 1.3E-19 128.3 9.5 82 296-377 43-127 (129)
87 1s79_A Lupus LA protein; RRM, 99.6 3E-15 1E-19 123.7 8.5 80 296-375 8-88 (103)
88 3ns6_A Eukaryotic translation 99.6 1.4E-15 4.8E-20 125.0 6.3 79 298-376 5-93 (100)
89 2cpd_A Apobec-1 stimulating pr 99.6 1.5E-14 5.2E-19 118.3 12.4 76 296-377 12-90 (99)
90 1why_A Hypothetical protein ri 99.6 1.3E-14 4.4E-19 118.3 11.7 78 296-377 14-94 (97)
91 1wez_A HnRNP H', FTP-3, hetero 99.6 6.4E-15 2.2E-19 121.6 9.8 78 297-375 13-91 (102)
92 4a8x_A RNA-binding protein wit 99.6 5.1E-15 1.7E-19 118.0 8.9 79 298-376 3-85 (88)
93 1oo0_B CG8781-PA, drosophila Y 99.6 5.2E-15 1.8E-19 123.4 9.3 82 296-377 23-107 (110)
94 2m2b_A RNA-binding protein 10; 99.6 2.6E-15 9E-20 129.5 7.6 81 296-377 20-109 (131)
95 2cpj_A Non-POU domain-containi 99.6 1.3E-14 4.4E-19 118.7 11.3 78 296-377 12-90 (99)
96 2fc9_A NCL protein; structure 99.6 9.8E-15 3.3E-19 119.8 10.5 80 295-377 11-92 (101)
97 1p1t_A Cleavage stimulation fa 99.6 4.1E-15 1.4E-19 122.6 8.2 80 297-376 6-88 (104)
98 2wbr_A GW182, gawky, LD47780P; 99.6 3.1E-15 1.1E-19 118.7 7.1 73 298-374 6-79 (89)
99 2cpi_A CCR4-NOT transcription 99.6 6.2E-15 2.1E-19 123.4 9.4 83 295-377 11-102 (111)
100 2fc8_A NCL protein; structure 99.6 1.2E-14 4.1E-19 119.4 10.9 80 295-377 11-93 (102)
101 2hvz_A Splicing factor, argini 99.6 5.7E-15 2E-19 121.2 8.6 75 300-377 1-76 (101)
102 2cpy_A RNA-binding protein 12; 99.6 5.8E-15 2E-19 124.2 8.7 81 296-376 12-94 (114)
103 2cq4_A RNA binding motif prote 99.6 2.8E-15 9.7E-20 125.9 6.7 80 296-376 22-104 (114)
104 2e5g_A U6 snRNA-specific termi 99.6 1.8E-14 6.3E-19 116.7 11.0 75 298-376 7-82 (94)
105 2e5j_A Methenyltetrahydrofolat 99.6 2.1E-14 7.1E-19 117.0 11.4 79 296-377 16-95 (97)
106 2dgw_A Probable RNA-binding pr 99.6 2E-14 7E-19 115.5 11.0 79 296-376 7-87 (91)
107 1x4f_A Matrin 3; structural ge 99.6 1.1E-14 3.6E-19 122.0 9.5 78 296-377 22-103 (112)
108 3beg_B Splicing factor, argini 99.6 4.4E-15 1.5E-19 125.2 7.3 74 298-376 15-94 (115)
109 2dnp_A RNA-binding protein 14; 99.6 1.6E-14 5.5E-19 115.9 10.2 75 296-376 6-81 (90)
110 2ek1_A RNA-binding protein 12; 99.6 6.1E-15 2.1E-19 119.5 7.5 78 297-374 13-93 (95)
111 1wf1_A RNA-binding protein RAL 99.5 1.8E-14 6.3E-19 120.2 10.4 74 297-376 25-100 (110)
112 2kvi_A Nuclear polyadenylated 99.5 8.4E-15 2.9E-19 119.2 8.1 76 296-377 7-84 (96)
113 3ulh_A THO complex subunit 4; 99.5 1.9E-14 6.4E-19 119.3 10.2 78 297-374 27-106 (107)
114 2jvo_A Nucleolar protein 3; nu 99.5 1.2E-14 4.2E-19 121.1 9.0 76 296-377 28-104 (108)
115 1wg5_A Heterogeneous nuclear r 99.5 3E-14 1E-18 117.7 11.2 81 296-376 12-94 (104)
116 2xnq_A Nuclear polyadenylated 99.5 1.9E-14 6.6E-19 117.5 9.9 74 297-376 20-95 (97)
117 1x4g_A Nucleolysin TIAR; struc 99.5 1.6E-14 5.6E-19 120.3 9.6 78 296-377 22-100 (109)
118 2la4_A Nuclear and cytoplasmic 99.5 9.7E-15 3.3E-19 119.8 7.9 75 298-376 26-101 (101)
119 1rk8_A CG8781-PA, CG8781-PA pr 99.5 2E-14 6.8E-19 129.0 10.6 81 297-377 70-153 (165)
120 2ytc_A PRE-mRNA-splicing facto 99.5 1.9E-14 6.6E-19 114.0 9.2 75 296-374 9-85 (85)
121 2jvr_A Nucleolar protein 3; RN 99.5 8.6E-15 3E-19 122.6 7.4 77 298-376 27-105 (111)
122 2cqh_A IGF-II mRNA-binding pro 99.5 1.1E-14 3.8E-19 117.6 7.7 75 297-376 6-83 (93)
123 2lea_A Serine/arginine-rich sp 99.5 8.4E-15 2.9E-19 127.1 7.2 82 296-377 44-128 (135)
124 2kn4_A Immunoglobulin G-bindin 99.5 3.5E-14 1.2E-18 126.1 11.4 81 297-377 68-151 (158)
125 1uaw_A Mouse-musashi-1; RNP-ty 99.5 8.1E-15 2.8E-19 113.9 6.3 74 300-373 1-76 (77)
126 2lcw_A RNA-binding protein FUS 99.3 6.6E-16 2.2E-20 130.3 0.0 82 296-377 4-96 (116)
127 1wel_A RNA-binding protein 12; 99.5 2.2E-14 7.5E-19 122.5 9.5 80 296-376 22-104 (124)
128 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 4E-14 1.4E-18 122.9 11.3 79 295-373 59-140 (140)
129 2hgn_A Heterogeneous nuclear r 99.5 3.4E-15 1.2E-19 130.1 4.4 80 296-376 43-123 (139)
130 1fjc_A Nucleolin RBD2, protein 99.5 1.7E-14 5.7E-19 117.2 8.2 80 295-377 12-92 (96)
131 2mss_A Protein (musashi1); RNA 99.5 9.9E-15 3.4E-19 112.9 6.5 73 301-373 1-75 (75)
132 2j76_E EIF-4B, EIF4B, eukaryot 99.5 6.7E-15 2.3E-19 120.8 5.8 78 297-376 17-98 (100)
133 1x4e_A RNA binding motif, sing 99.5 5.7E-15 2E-19 117.2 5.1 77 298-374 4-83 (85)
134 2cpx_A Hypothetical protein FL 99.5 5.6E-14 1.9E-18 118.0 11.3 81 297-377 23-106 (115)
135 1whx_A Hypothetical protein ri 99.5 1.4E-14 4.8E-19 121.3 7.5 77 296-376 7-84 (111)
136 1x5o_A RNA binding motif, sing 99.5 1E-13 3.5E-18 116.3 12.8 82 295-376 21-112 (114)
137 2db1_A Heterogeneous nuclear r 99.5 2.2E-14 7.4E-19 121.5 8.5 81 296-376 14-98 (118)
138 2nlw_A Eukaryotic translation 99.5 2.7E-14 9.3E-19 118.3 8.8 80 297-376 13-100 (105)
139 2dnn_A RNA-binding protein 12; 99.5 1.9E-14 6.6E-19 120.1 7.9 78 298-376 15-93 (109)
140 1x5p_A Negative elongation fac 99.5 1.2E-13 4E-18 112.5 12.2 75 297-377 13-88 (97)
141 2kt5_A RNA and export factor-b 99.5 4.6E-14 1.6E-18 120.3 10.1 81 296-376 32-114 (124)
142 2krb_A Eukaryotic translation 99.5 1.4E-14 5E-19 113.9 6.1 72 299-370 1-80 (81)
143 2dis_A Unnamed protein product 99.5 3.3E-14 1.1E-18 118.2 8.4 81 297-377 6-93 (109)
144 1iqt_A AUF1, heterogeneous nuc 99.5 9E-15 3.1E-19 113.1 4.5 73 301-373 1-75 (75)
145 1fj7_A Nucleolin RBD1, protein 99.5 1.1E-14 3.7E-19 119.5 5.2 78 297-376 15-95 (101)
146 2ki2_A SS-DNA binding protein 99.5 9E-15 3.1E-19 117.3 4.5 76 300-376 2-80 (90)
147 3lqv_A PRE-mRNA branch site pr 99.5 5.4E-14 1.9E-18 118.1 9.5 78 298-376 7-85 (115)
148 2a3j_A U1 small nuclear ribonu 99.5 6.4E-14 2.2E-18 120.2 10.0 78 298-376 28-110 (127)
149 2hgl_A HNRPF protein, heteroge 99.5 2.8E-14 9.7E-19 123.8 7.8 80 296-376 41-125 (136)
150 2i2y_A Fusion protein consists 99.5 5.6E-14 1.9E-18 123.9 9.4 79 296-377 70-149 (150)
151 2e44_A Insulin-like growth fac 99.5 5.1E-14 1.8E-18 114.3 8.4 77 298-376 14-92 (96)
152 3d2w_A TAR DNA-binding protein 99.5 4E-14 1.4E-18 113.7 7.4 77 296-376 8-84 (89)
153 2lmi_A GRSF-1, G-rich sequence 99.5 2E-14 7E-19 119.4 5.6 81 296-376 8-92 (107)
154 1l3k_A Heterogeneous nuclear r 99.5 1.4E-13 4.8E-18 125.8 10.9 80 298-377 103-184 (196)
155 2hgm_A HNRPF protein, heteroge 99.5 3.9E-14 1.3E-18 121.3 6.6 78 297-375 40-120 (126)
156 2dha_A FLJ20171 protein; RRM d 99.5 4.2E-14 1.4E-18 120.7 6.3 81 296-376 20-105 (123)
157 1nu4_A U1A RNA binding domain; 99.5 4.2E-14 1.5E-18 114.9 5.8 79 297-376 6-89 (97)
158 1sjr_A Polypyrimidine tract-bi 99.5 1.9E-13 6.4E-18 121.7 10.2 76 299-376 46-124 (164)
159 1wf0_A TDP-43, TAR DNA-binding 99.5 4.6E-14 1.6E-18 112.8 5.7 76 298-377 4-79 (88)
160 2xs2_A Deleted in azoospermia- 99.5 4.3E-14 1.5E-18 116.1 5.7 79 297-376 7-86 (102)
161 4f02_A Polyadenylate-binding p 99.5 1.5E-13 5.1E-18 128.2 9.4 78 299-376 103-181 (213)
162 3zzy_A Polypyrimidine tract-bi 99.4 3E-13 1E-17 115.9 10.1 75 299-376 28-106 (130)
163 1q42_A MTR2, mRNA transport re 99.4 9.8E-14 3.4E-18 122.8 7.0 101 10-117 24-146 (201)
164 2cq2_A Hypothetical protein LO 99.4 2.1E-13 7.3E-18 114.2 8.6 75 298-376 24-106 (114)
165 2e5i_A Heterogeneous nuclear r 99.4 6.3E-13 2.1E-17 113.3 11.5 73 300-376 26-102 (124)
166 2f3j_A RNA and export factor b 99.4 3.8E-13 1.3E-17 122.1 9.9 81 296-376 85-167 (177)
167 1wg1_A KIAA1579 protein, homol 99.4 1.8E-13 6.1E-18 109.4 6.8 74 298-376 4-78 (88)
168 4f02_A Polyadenylate-binding p 99.4 4.4E-13 1.5E-17 125.0 10.5 79 298-376 14-95 (213)
169 2diu_A KIAA0430 protein; struc 99.4 4.9E-13 1.7E-17 107.1 9.2 70 300-377 10-85 (96)
170 1l3k_A Heterogeneous nuclear r 99.4 5.1E-13 1.7E-17 122.0 10.5 81 296-376 10-92 (196)
171 3egn_A RNA-binding protein 40; 99.4 2.7E-13 9.1E-18 118.5 7.9 79 298-376 44-130 (143)
172 2hzc_A Splicing factor U2AF 65 99.4 4E-13 1.4E-17 106.8 7.6 70 298-372 5-86 (87)
173 3md3_A Nuclear and cytoplasmic 99.4 1.5E-12 5.2E-17 115.2 11.7 77 298-374 86-165 (166)
174 2j8a_A Histone-lysine N-methyl 99.4 5.6E-13 1.9E-17 112.8 7.7 76 300-375 3-95 (136)
175 2voo_A Lupus LA protein; RNA-b 99.4 1.1E-12 3.7E-17 120.8 10.3 80 297-376 107-187 (193)
176 1fxl_A Paraneoplastic encephal 99.4 1.5E-12 5E-17 115.5 10.9 78 299-376 2-82 (167)
177 1b7f_A Protein (SXL-lethal pro 99.4 1.1E-12 3.8E-17 116.6 9.7 80 298-377 2-84 (168)
178 2dnl_A Cytoplasmic polyadenyla 99.4 5.6E-13 1.9E-17 112.0 7.0 76 297-374 6-86 (114)
179 2qfj_A FBP-interacting repress 99.4 2.6E-12 8.9E-17 119.1 11.8 80 298-377 124-206 (216)
180 2bz2_A Negative elongation fac 99.4 1.3E-12 4.4E-17 111.1 8.7 74 297-376 37-111 (121)
181 3tyt_A Heterogeneous nuclear r 99.4 8.8E-13 3E-17 122.6 8.4 76 298-376 3-80 (205)
182 2yh0_A Splicing factor U2AF 65 99.4 5.6E-12 1.9E-16 115.2 13.4 81 297-377 112-195 (198)
183 2cjk_A Nuclear polyadenylated 99.4 1.1E-12 3.7E-17 116.7 7.7 78 299-376 87-166 (167)
184 2g4b_A Splicing factor U2AF 65 99.3 2.7E-12 9.2E-17 114.7 10.3 75 299-373 94-171 (172)
185 3md3_A Nuclear and cytoplasmic 99.3 1.5E-12 5E-17 115.3 8.4 77 300-376 1-79 (166)
186 3pgw_A U1-A; protein-RNA compl 99.3 9.7E-12 3.3E-16 120.5 14.6 77 295-374 203-281 (282)
187 1b7f_A Protein (SXL-lethal pro 99.3 1.3E-11 4.3E-16 109.7 11.6 76 298-373 88-168 (168)
188 2cjk_A Nuclear polyadenylated 99.3 2.6E-12 8.8E-17 114.2 6.9 78 298-376 2-81 (167)
189 2qfj_A FBP-interacting repress 99.3 5E-12 1.7E-16 117.2 9.0 80 297-376 26-108 (216)
190 2adc_A Polypyrimidine tract-bi 99.3 5.3E-12 1.8E-16 119.0 8.3 77 297-376 32-110 (229)
191 3nmr_A Cugbp ELAV-like family 99.3 1.5E-11 5.2E-16 109.8 10.8 79 298-376 2-88 (175)
192 1fxl_A Paraneoplastic encephal 99.3 1.6E-11 5.4E-16 108.7 10.8 76 298-373 87-167 (167)
193 3nmr_A Cugbp ELAV-like family 99.3 1.1E-11 3.8E-16 110.7 9.6 76 298-373 94-174 (175)
194 3pgw_A U1-A; protein-RNA compl 99.3 1.3E-11 4.6E-16 119.5 10.9 80 296-376 6-90 (282)
195 1fje_B Nucleolin RBD12, protei 99.3 7.1E-12 2.4E-16 112.4 7.8 76 298-376 98-174 (175)
196 2pe8_A Splicing factor 45; RRM 99.3 2E-11 6.8E-16 101.0 9.7 79 298-376 7-94 (105)
197 2dit_A HIV TAT specific factor 99.3 5.2E-11 1.8E-15 99.5 12.0 79 296-376 12-102 (112)
198 3u1l_A PRE-mRNA-splicing facto 99.2 6.4E-12 2.2E-16 118.9 7.1 77 296-376 131-229 (240)
199 1qm9_A Polypyrimidine tract-bi 99.2 8.3E-12 2.8E-16 114.5 6.2 76 298-376 2-79 (198)
200 2ghp_A U4/U6 snRNA-associated 99.2 3.4E-11 1.2E-15 117.2 9.4 81 295-375 37-117 (292)
201 3sde_A Paraspeckle component 1 99.2 4.4E-11 1.5E-15 115.0 9.5 77 296-376 19-96 (261)
202 3smz_A Protein raver-1, ribonu 99.2 5E-11 1.7E-15 115.6 9.7 80 297-376 182-264 (284)
203 2ghp_A U4/U6 snRNA-associated 99.2 3.3E-11 1.1E-15 117.4 8.0 79 297-376 208-291 (292)
204 3smz_A Protein raver-1, ribonu 99.2 9.7E-11 3.3E-15 113.6 10.7 78 299-376 95-175 (284)
205 2adc_A Polypyrimidine tract-bi 99.2 7.7E-11 2.6E-15 111.0 9.7 76 298-376 150-228 (229)
206 1qm9_A Polypyrimidine tract-bi 99.2 3.4E-11 1.2E-15 110.3 6.9 76 298-376 119-197 (198)
207 2g4b_A Splicing factor U2AF 65 99.1 5.4E-11 1.8E-15 106.1 7.7 74 298-376 3-88 (172)
208 2d9o_A DNAJ (HSP40) homolog, s 99.1 4.9E-10 1.7E-14 91.7 12.7 75 299-377 10-91 (100)
209 3tyt_A Heterogeneous nuclear r 99.1 3.8E-11 1.3E-15 111.5 6.3 69 298-366 122-193 (205)
210 2yh0_A Splicing factor U2AF 65 99.1 7.3E-11 2.5E-15 107.7 7.6 74 298-376 3-88 (198)
211 1fje_B Nucleolin RBD12, protei 99.1 1.8E-11 6E-16 109.8 3.3 81 296-376 10-91 (175)
212 3sde_A Paraspeckle component 1 99.1 2.8E-10 9.6E-15 109.3 9.8 78 299-376 96-179 (261)
213 1of5_B MTR2, YKL186C, mRNA tra 99.1 6.3E-10 2.2E-14 97.4 10.9 100 11-117 15-121 (184)
214 3v4m_A Splicing factor U2AF 65 99.0 2.2E-10 7.4E-15 94.7 6.4 78 298-375 4-96 (105)
215 1jmt_A Splicing factor U2AF 35 99.0 6.3E-11 2.1E-15 97.8 3.0 70 304-373 20-103 (104)
216 3tht_A Alkylated DNA repair pr 99.0 4.7E-10 1.6E-14 111.6 8.9 75 296-374 15-97 (345)
217 3ue2_A Poly(U)-binding-splicin 99.0 7.6E-10 2.6E-14 93.4 7.9 78 298-375 19-108 (118)
218 1owx_A Lupus LA protein, SS-B, 98.9 2.8E-09 9.6E-14 89.8 9.3 76 295-374 14-94 (121)
219 3s6e_A RNA-binding protein 39; 98.8 6.9E-09 2.4E-13 86.9 6.2 76 298-375 6-92 (114)
220 2dnr_A Synaptojanin-1; RRM dom 98.7 2E-08 6.9E-13 79.6 6.8 73 298-376 6-86 (91)
221 1ufw_A Synaptojanin 2; RNP dom 98.5 1.4E-07 4.7E-12 75.2 5.4 73 297-375 13-94 (95)
222 3dxb_A Thioredoxin N-terminall 98.2 2.8E-06 9.7E-11 79.1 7.5 64 312-375 142-212 (222)
223 2l9w_A U4/U6 snRNA-associated- 97.8 3.5E-05 1.2E-09 62.6 6.5 72 298-373 20-97 (117)
224 4i4k_A Uncharacterized protein 97.5 0.00086 2.9E-08 57.7 11.0 107 15-126 21-135 (143)
225 2dhx_A Poly (ADP-ribose) polym 97.1 0.0031 1.1E-07 50.7 9.7 73 298-376 7-84 (104)
226 3gzr_A Uncharacterized protein 96.9 0.013 4.4E-07 50.5 12.6 113 16-133 9-132 (146)
227 3cu3_A Domain of unknown funct 96.8 0.0058 2E-07 53.9 10.1 111 14-129 17-136 (172)
228 3hx8_A MLR2180 protein, putati 96.5 0.028 9.7E-07 46.1 11.5 114 11-129 4-124 (129)
229 3d9r_A Ketosteroid isomerase-l 96.2 0.022 7.6E-07 47.2 9.4 113 13-131 11-133 (135)
230 1whv_A Poly(A)-specific ribonu 96.0 0.016 5.4E-07 46.1 6.6 54 299-359 16-69 (100)
231 3b7c_A Uncharacterized protein 96.0 0.13 4.5E-06 42.3 12.8 105 17-127 9-119 (122)
232 1wey_A Calcipressin 1; structu 95.9 0.013 4.5E-07 47.2 5.8 74 299-376 5-84 (104)
233 3gwr_A Putative calcium/calmod 95.7 0.088 3E-06 45.1 10.9 107 18-129 13-126 (144)
234 3ctr_A Poly(A)-specific ribonu 95.5 0.016 5.5E-07 46.2 4.8 53 300-359 7-59 (101)
235 3h51_A Putative calcium/calmod 95.3 0.37 1.3E-05 41.2 13.7 115 12-133 19-142 (156)
236 3pq1_A Poly(A) RNA polymerase; 95.3 0.0091 3.1E-07 61.2 3.6 61 299-363 53-113 (464)
237 1wwh_A Nucleoporin 35, nucleop 95.2 0.045 1.5E-06 45.3 6.8 71 298-373 23-94 (119)
238 2gxf_A Hypothetical protein YY 94.9 0.14 4.9E-06 43.1 9.6 107 16-128 6-121 (142)
239 2ux0_A Calcium-calmodulin depe 94.6 0.39 1.3E-05 40.2 11.6 111 16-129 16-135 (143)
240 1uw4_A UPF3X; nonsense mediate 94.3 0.14 4.8E-06 40.3 7.3 64 300-363 2-70 (91)
241 2rcd_A Uncharacterized protein 94.0 0.92 3.1E-05 37.3 12.5 109 12-128 14-124 (129)
242 1tp6_A Hypothetical protein PA 93.9 0.35 1.2E-05 40.3 9.7 108 15-128 12-126 (128)
243 3f7s_A Uncharacterized NTF2-li 93.9 0.73 2.5E-05 38.4 11.8 113 13-129 8-126 (142)
244 3duk_A NTF2-like protein of un 93.7 0.77 2.6E-05 38.0 11.4 107 16-130 15-123 (125)
245 3er7_A Uncharacterized NTF2-li 93.5 0.069 2.3E-06 45.1 4.4 60 17-81 6-73 (131)
246 3bb9_A Putative orphan protein 93.2 0.32 1.1E-05 41.3 8.4 107 14-126 31-145 (148)
247 3rob_A Uncharacterized conserv 93.1 0.63 2.2E-05 39.4 10.1 107 12-128 16-134 (139)
248 3jum_A Phenazine biosynthesis 93.0 0.33 1.1E-05 43.4 8.4 82 15-98 43-128 (185)
249 3fka_A Uncharacterized NTF-2 l 93.0 0.68 2.3E-05 38.0 9.9 103 17-130 13-119 (120)
250 3soy_A NTF2-like superfamily p 92.9 0.84 2.9E-05 38.8 10.7 114 12-128 10-133 (145)
251 2owp_A Hypothetical protein BX 92.7 2.3 7.8E-05 35.3 12.9 114 12-131 11-126 (129)
252 3dm8_A Uncharacterized protein 92.6 0.72 2.5E-05 38.8 9.7 97 16-115 7-112 (143)
253 2r4i_A Uncharacterized protein 92.4 0.87 3E-05 36.6 9.6 104 17-126 10-117 (123)
254 3cnx_A Uncharacterized protein 92.3 1.6 5.3E-05 38.4 11.8 112 16-132 15-157 (170)
255 2rfr_A Uncharacterized protein 91.9 0.61 2.1E-05 39.5 8.5 113 14-133 20-144 (155)
256 3fsd_A NTF2-like protein of un 91.8 0.79 2.7E-05 38.1 9.0 106 16-126 17-128 (134)
257 3ff0_A Phenazine biosynthesis 91.8 0.48 1.6E-05 41.5 7.6 85 14-100 20-108 (163)
258 3blz_A NTF2-like protein of un 91.4 4.1 0.00014 33.3 12.9 110 15-132 14-126 (128)
259 3mg1_A OCP, orange carotenoid 91.3 1.2 4E-05 42.6 10.1 111 13-128 192-306 (323)
260 2kn4_A Immunoglobulin G-bindin 91.2 0.19 6.6E-06 43.1 4.6 31 329-359 3-33 (158)
261 3p3d_A Nucleoporin 53; structu 91.0 0.14 4.7E-06 43.0 3.2 76 300-376 8-99 (132)
262 3b8l_A Uncharacterized protein 90.9 1.2 4E-05 38.2 9.4 118 13-132 28-153 (163)
263 3h3h_A Uncharacterized snoal-l 90.9 0.31 1E-05 39.8 5.3 65 14-80 9-82 (122)
264 3dxo_A Uncharacterized snoal-l 90.3 1.1 3.8E-05 36.5 8.2 64 16-84 6-77 (121)
265 1nww_A Limonene-1,2-epoxide hy 90.0 2.7 9.2E-05 35.0 10.8 50 15-68 24-74 (149)
266 3ff2_A Uncharacterized cystati 89.9 1.6 5.6E-05 34.9 8.9 64 16-82 5-71 (117)
267 2chc_A Protein RV3472; hypothe 89.8 1.9 6.4E-05 37.1 9.8 112 14-131 15-132 (170)
268 3f14_A Uncharacterized NTF2-li 89.5 0.67 2.3E-05 37.2 6.1 90 17-115 4-100 (112)
269 3gzb_A Putative snoal-like pol 89.4 1.1 3.9E-05 37.2 7.3 78 16-101 23-103 (154)
270 3a76_A Gamma-hexachlorocyclohe 88.7 2.3 7.8E-05 37.1 9.6 114 14-131 32-154 (176)
271 1ohp_A Steroid delta-isomerase 88.0 1.6 5.4E-05 34.7 7.5 51 15-68 7-58 (125)
272 3en8_A Uncharacterized NTF-2 l 87.6 4.7 0.00016 33.1 10.4 63 15-80 7-70 (128)
273 3hk4_A MLR7391 protein; NTF2-l 87.5 3.5 0.00012 34.6 9.6 95 17-115 24-123 (136)
274 3ebt_A Uncharacterized NTF2-li 87.2 4.1 0.00014 32.9 9.8 65 16-80 6-76 (132)
275 3fh1_A Uncharacterized NTF2-li 87.2 5.1 0.00018 32.5 10.4 68 13-80 17-86 (129)
276 2gex_A SNOL; alpha+beta barrel 86.8 7 0.00024 32.7 11.3 63 15-82 6-71 (152)
277 4h3u_A Hypothetical protein; s 86.6 4.4 0.00015 34.3 9.9 92 17-114 29-126 (158)
278 3i0y_A Putative polyketide cyc 86.5 4.8 0.00016 32.9 9.9 51 15-69 10-61 (140)
279 3dmc_A NTF2-like protein; stru 85.8 9.4 0.00032 31.5 11.4 62 6-68 5-67 (134)
280 3f7x_A Putative polyketide cyc 84.6 8.1 0.00028 32.5 10.6 50 15-68 22-72 (151)
281 1oh0_A Steroid delta-isomerase 84.1 2.9 9.8E-05 33.8 7.2 64 14-80 8-74 (131)
282 3g8z_A Protein of unknown func 83.9 3.6 0.00012 34.6 8.0 55 14-68 21-76 (148)
283 1sjw_A Nogalonic acid methyl e 83.8 4.4 0.00015 33.4 8.4 64 16-82 5-72 (144)
284 3k0z_A Putative polyketide cyc 83.7 9.6 0.00033 32.4 10.8 64 15-82 36-102 (159)
285 2gey_A ACLR protein; alpha+bet 83.4 11 0.00037 31.8 10.9 62 15-82 6-70 (158)
286 3ehc_A Snoal-like polyketide c 83.0 6 0.0002 32.0 8.8 59 16-82 6-67 (128)
287 3ec9_A Uncharacterized NTF2-li 83.0 11 0.00036 30.9 10.5 66 16-81 15-84 (140)
288 3f9s_A Putative polyketide cyc 82.9 14 0.00047 30.5 11.3 68 15-82 8-79 (146)
289 2l08_A Regulator of nonsense t 82.3 0.87 3E-05 36.1 3.0 65 299-363 9-78 (97)
290 3g0k_A Putative membrane prote 82.0 21 0.00073 29.8 12.4 68 9-82 23-94 (148)
291 1z1s_A Hypothetical protein PA 82.0 10 0.00035 32.2 10.4 54 16-69 26-81 (163)
292 1s5a_A Hypothetical protein YE 81.6 12 0.00041 30.8 10.4 54 15-68 12-67 (150)
293 2a15_A Hypothetical protein RV 81.4 13 0.00046 30.1 10.6 63 15-78 9-78 (139)
294 2bng_A MB2760; epoxide hydrola 81.3 7.2 0.00024 32.5 8.9 64 14-81 16-81 (149)
295 2rgq_A Domain of unknown funct 81.0 22 0.00075 29.3 12.1 107 14-128 11-125 (144)
296 2i2y_A Fusion protein consists 80.1 1.2 3.9E-05 37.8 3.4 45 331-376 5-51 (150)
297 2f99_A Aklanonic acid methyl e 79.3 9.3 0.00032 32.0 9.0 65 15-82 13-81 (153)
298 3ef8_A Putative scyalone dehyd 79.1 19 0.00067 29.9 11.0 111 16-130 14-132 (150)
299 1tuh_A BAL32A, hypothetical pr 77.5 5.9 0.0002 33.3 7.2 68 13-80 29-100 (156)
300 3kkg_A Putative snoal-like pol 76.6 10 0.00035 31.3 8.4 64 15-82 11-80 (146)
301 2f86_B Hypothetical protein K1 74.9 20 0.00069 30.0 9.8 111 16-128 15-130 (143)
302 3fgy_A Uncharacterized NTF2-li 73.5 4.6 0.00016 32.9 5.2 54 15-68 7-61 (135)
303 2k54_A Protein ATU0742; protei 70.4 37 0.0013 26.7 10.8 91 16-114 6-101 (123)
304 3f40_A Uncharacterized NTF2-li 68.1 11 0.00038 30.1 6.3 49 16-69 9-58 (114)
305 3ke7_A Putative ketosteroid is 64.9 58 0.002 26.9 10.6 101 26-131 28-130 (134)
306 3d45_A Poly(A)-specific ribonu 64.9 13 0.00046 38.3 7.6 54 299-359 440-493 (507)
307 3grd_A Uncharacterized NTF2-su 64.0 8.9 0.0003 31.0 5.0 96 16-114 7-111 (134)
308 3rga_A Epoxide hydrolase; NTF2 63.6 13 0.00046 35.0 6.8 51 15-68 8-59 (283)
309 3mso_A Steroid delta-isomerase 57.1 9.5 0.00033 31.9 4.0 52 14-68 10-62 (143)
310 3ejv_A Uncharacterized protein 56.2 98 0.0033 26.6 11.6 73 12-84 25-107 (179)
311 3rga_A Epoxide hydrolase; NTF2 52.5 88 0.003 29.2 10.5 55 11-68 136-191 (283)
312 3f8h_A Putative polyketide cyc 51.0 95 0.0033 25.6 9.5 48 17-68 22-70 (150)
313 3g16_A Uncharacterized protein 46.1 1.4E+02 0.0047 25.4 9.7 67 12-80 9-78 (156)
314 4f25_A Polyadenylate-binding p 40.0 7.6 0.00026 31.0 0.6 18 298-315 96-113 (115)
315 2pk2_A Cyclin-T1, protein TAT; 38.3 6.6 0.00023 38.6 0.0 14 309-322 227-240 (358)
316 3q2s_C Cleavage and polyadenyl 38.1 7.1 0.00024 35.7 0.2 12 342-353 142-153 (229)
317 3cwz_B RAB6IP1, RAB6-interacti 35.8 38 0.0013 33.6 5.0 77 13-98 176-277 (384)
318 3fry_A Probable copper-exporti 35.1 96 0.0033 21.7 6.1 58 300-362 7-64 (73)
319 3f8x_A Putative delta-5-3-keto 34.0 38 0.0013 28.5 4.1 54 12-68 19-73 (148)
320 2pk2_A Cyclin-T1, protein TAT; 30.8 10 0.00036 37.2 0.0 9 33-41 66-74 (358)
321 4gb5_A Uncharacterized protein 29.8 1.2E+02 0.004 25.1 6.6 68 16-83 14-85 (159)
322 4e8u_A Putative uncharacterize 27.8 1.7E+02 0.0059 25.3 7.2 57 301-358 14-82 (172)
323 2imj_A Hypothetical protein DU 25.9 74 0.0025 27.0 4.3 110 8-128 12-132 (166)
324 3ub1_A ORF13-like protein; NTF 25.3 3.4E+02 0.012 25.0 9.4 87 14-125 156-245 (261)
325 3u5c_h Suppressor protein STM1 25.1 15 0.00052 34.5 0.0 37 383-419 219-256 (273)
326 4giw_A RUN and SH3 domain-cont 21.8 31 0.0011 30.7 1.4 48 19-71 133-184 (198)
327 3eby_A Beta subunit of A putat 20.1 3.7E+02 0.013 22.2 10.4 70 13-82 14-97 (163)
328 2g0c_A ATP-dependent RNA helic 20.1 56 0.0019 23.7 2.3 68 301-374 2-75 (76)
No 1
>3q90_A RAS GTPase-activating protein-binding protein 1; structural genomics, structural genomics consortium, SGC, NT (A+B proteins); 1.70A {Homo sapiens} SCOP: d.17.4.0
Probab=100.00 E-value=1.7e-38 Score=278.32 Aligned_cols=128 Identities=36% Similarity=0.668 Sum_probs=113.8
Q ss_pred CCCHHHHHHHHHHHHHHHhccCcchhcccccCCceEEeeCC--CCc-ceeeccHHHHHHHHhcCCCCcceEEEeeeeeee
Q 012564 8 PPSAQVVGNAFVEQYYHILHSTPELVFRFYQDSSVLSRPDS--NGV-MTSVTTMEGINQKILSLDYKNYKAEIKTADAQN 84 (460)
Q Consensus 8 ~~~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~S~l~~~~~--~~~-~~~~~g~~~I~~~~~~l~~~~~~~~i~s~d~q~ 84 (460)
.|++++||++||+|||++|+++|+.||+||.++|+|+|.+. +|. +..+.|+++|+++|++|||++|+++|.++|||+
T Consensus 6 ~p~~~~vg~~Fv~~YY~~ld~~r~~L~~~Y~~~S~l~~~~~~~ng~~~~~~~G~~~I~~~l~~Lp~~~~~~~I~tvD~Qp 85 (140)
T 3q90_A 6 KPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMSQNFTNCHTKIRHVDAHA 85 (140)
T ss_dssp --CHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEC----------CCCEEHHHHHHHHHHHTCCCSCEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHhcCHHHHHhhcccCceEEEEccCCCCceeecccCHHHHHHHHHhCCCccceEEEEeEEEEE
Confidence 58999999999999999999999999999999999999764 354 347899999999999999999999999999999
Q ss_pred eCCCcEEEEEEEEEEcCCCCcccEEEeeeeeecC---CcEEEEccEEEEecCCc
Q 012564 85 SHKEGVTVLVTGCLTGKDNLRRKFAQSFFLAPQD---NGYFVLNDVFRYVDDGE 135 (460)
Q Consensus 85 s~~~gili~V~G~~~~~~~~~~~F~q~F~L~~~~---~~y~v~nDifr~~~~~~ 135 (460)
++++||||+|+|+|+.++++.|+|+|+|+|++++ ++|||+||||||+|+.+
T Consensus 86 s~~~gilI~V~G~l~~~~~~~~~F~QtF~L~p~~~~~~~y~V~nDifR~~de~~ 139 (140)
T 3q90_A 86 TLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVHNDIFRYQDEVF 139 (140)
T ss_dssp CGGGCEEEEEEEEEECTTCCCEEEEEEEEEEECSSSTTCEEEEEEEEEEGGGC-
T ss_pred eCCCCEEEEEEEEEecCCCCccEEEEEEEEeecCCCCCCEEEEEEEeEeehhhc
Confidence 9999999999999999998999999999999996 79999999999999976
No 2
>3ujm_A Rasputin; NTF2-like fold, RAS signaling, signaling protein; HET: EPE; 2.74A {Drosophila melanogaster}
Probab=100.00 E-value=4.3e-37 Score=262.52 Aligned_cols=117 Identities=38% Similarity=0.631 Sum_probs=109.3
Q ss_pred CHHHHHHHHHHHHHHHhccCcchhcccccCCceEEee-CCCCcceeeccHHHHHHHHhcCCCCcceEEEeeeeeeeeCCC
Q 012564 10 SAQVVGNAFVEQYYHILHSTPELVFRFYQDSSVLSRP-DSNGVMTSVTTMEGINQKILSLDYKNYKAEIKTADAQNSHKE 88 (460)
Q Consensus 10 ~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~S~l~~~-~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~s~d~q~s~~~ 88 (460)
|+++||++||++||++|+++|+.|++||.++|+|+|. +. .+.|+++|+++|++|||.+|+|+|.++|||+++++
T Consensus 2 s~~~vg~~Fv~~YY~~ld~~r~~L~~~Y~~~s~~~~~~~~-----~~~G~~~I~~~l~~Lpf~~~~~~I~t~D~Qp~~~~ 76 (120)
T 3ujm_A 2 SHMSVGREFVRQYYTLLNKAPNHLHRFYNHNSSYIHGESK-----LVVGQREIHNRIQQLNFNDCHAKISQVDAQATLGN 76 (120)
T ss_dssp --CCHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEETTCC-----CEESHHHHHHHHHHHCCCSCEEEEEEEEEEEEGGG
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHhhhecccceEEEcCCc-----EecCHHHHHHHHHcCCCcceEEEEecccceEcCCC
Confidence 6789999999999999999999999999999987664 44 89999999999999999999999999999999999
Q ss_pred cEEEEEEEEEEcCCCCcccEEEeeeeeecC-CcEEEEccEEEEe
Q 012564 89 GVTVLVTGCLTGKDNLRRKFAQSFFLAPQD-NGYFVLNDVFRYV 131 (460)
Q Consensus 89 gili~V~G~~~~~~~~~~~F~q~F~L~~~~-~~y~v~nDifr~~ 131 (460)
||||+|+|+|+.++++.|+|+|+|+|++++ ++|||+||||||+
T Consensus 77 gili~V~G~l~~~~~~~r~F~QtF~L~p~~~~~y~V~nDifR~q 120 (120)
T 3ujm_A 77 GVVVQVTGELSNDGQPMRRFTQTFVLAAQSPKKYYVHNDIFRYQ 120 (120)
T ss_dssp EEEEEEEEEEESTTCCCEEEEEEEEEEECSTTCEEEEEEEEEEC
T ss_pred CEEEEEEEEEEeCCCCCceEEEEEEEEEcCCCCEEEEEEEEecC
Confidence 999999999999998899999999999996 7999999999995
No 3
>1zo2_A NTF2, nuclear transport factor 2; structural genomics, structural genomics consortium, SGC, transport protein; 1.60A {Cryptosporidium parvum} SCOP: d.17.4.2
Probab=100.00 E-value=2.3e-36 Score=261.16 Aligned_cols=123 Identities=29% Similarity=0.475 Sum_probs=117.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhccCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcCCCCcceEEEeeeeeee
Q 012564 5 TATPPSAQVVGNAFVEQYYHILHSTPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLDYKNYKAEIKTADAQN 84 (460)
Q Consensus 5 ~~~~~~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~s~d~q~ 84 (460)
....|++++||++||++||++|+++|+.|++||.++|+|+|+|. .+.|+++|.++|.+|||++|+|+|.++|||+
T Consensus 5 ~~~~p~~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~ls~~g~-----~~~G~~~I~~~l~~Lp~~~~~h~i~t~D~qp 79 (129)
T 1zo2_A 5 INLNPQFDQIGKQFVQHYYQTFQTNRPALGGLYGPQSMLTWEDT-----QFQGQANIVNKFNSLNFQRVQFEITRVDCQP 79 (129)
T ss_dssp CBCCTTHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEETTE-----EEESHHHHHHHHHHHCCSCEEEEEEEEEEEE
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhCCCcEEEECCc-----eeccHHHHHHHHHhCCCcceEEEEEEEEEEE
Confidence 34488999999999999999999999999999999999999987 8999999999999999999999999999999
Q ss_pred eCCCcEEEEEEEEEEcCCCCcccEEEeeeeeecC-CcEEEEccEEEEec
Q 012564 85 SHKEGVTVLVTGCLTGKDNLRRKFAQSFFLAPQD-NGYFVLNDVFRYVD 132 (460)
Q Consensus 85 s~~~gili~V~G~~~~~~~~~~~F~q~F~L~~~~-~~y~v~nDifr~~~ 132 (460)
+.++||||+|+|.|+.++++.|+|+|+|+|++++ ++|||+||||||++
T Consensus 80 ~~~~gilI~V~G~~~~~~~~~~~F~qtF~L~p~~~~~y~I~nD~fR~~~ 128 (129)
T 1zo2_A 80 SPNNGSIVFVTGDVRIDDGQPLKFSQVFNLMPSGNGGFMIFNDLFRLNL 128 (129)
T ss_dssp CTBSSEEEEEEEEEEETTCCCEEEEEEEEEEECSSSCEEEEEEEEEEC-
T ss_pred eCCCcEEEEEEEEEEECCCCcceEEEEEEEEEcCCCcEEEEeEEEEEec
Confidence 9989999999999999999999999999999998 79999999999986
No 4
>1gy6_A Nuclear transport factor 2; 1.6A {Rattus norvegicus} SCOP: d.17.4.2 PDB: 1a2k_A 1oun_A 1ar0_A 1u5o_A 1ask_A 1gy5_A 1jb5_A 1jb4_A 1jb2_A 1qma_A
Probab=100.00 E-value=2.8e-36 Score=260.05 Aligned_cols=123 Identities=22% Similarity=0.391 Sum_probs=118.5
Q ss_pred CCCHHHHHHHHHHHHHHHhccCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcCCCCcceEEEeeeeeeeeCC
Q 012564 8 PPSAQVVGNAFVEQYYHILHSTPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLDYKNYKAEIKTADAQNSHK 87 (460)
Q Consensus 8 ~~~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~s~d~q~s~~ 87 (460)
.|++++||++||++||++|+++|+.|++||+++|+|+|+|. .+.|+++|.++|.+||+++|+|+|.++|||++.+
T Consensus 4 ~p~~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~ls~~g~-----~~~G~~~I~~~l~~Lp~~~~~h~i~t~d~qp~~~ 78 (127)
T 1gy6_A 4 KPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQ-----QFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPD 78 (127)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHGGGGGGGEEEEEEEEETTE-----EEESHHHHHHHHHHCSCSCEEEEEEEEEEEECTT
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHHHHhhCCCcEEEECCc-----cccCHHHHHHHHHhCCCcceEEEEEEEEEEEeCC
Confidence 57899999999999999999999999999999999999987 8999999999999999999999999999999999
Q ss_pred CcEEEEEEEEEEcCCCCcccEEEeeeeeecCCcEEEEccEEEEecCCc
Q 012564 88 EGVTVLVTGCLTGKDNLRRKFAQSFFLAPQDNGYFVLNDVFRYVDDGE 135 (460)
Q Consensus 88 ~gili~V~G~~~~~~~~~~~F~q~F~L~~~~~~y~v~nDifr~~~~~~ 135 (460)
+||||+|+|.|+.++++.|+|+|+|+|++++++|||+||||||++..+
T Consensus 79 ~~ili~V~G~~~~~~~~~~~F~qtF~L~p~~~~~~I~nD~fr~~~~~~ 126 (127)
T 1gy6_A 79 SCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNF 126 (127)
T ss_dssp SCEEEEEEEEEEETTSCCEEEEEEEEEEEETTEEEEEEEEEEECCCCC
T ss_pred CcEEEEEEEEEEECCCCcceEeEEEEEEEeCCEEEEEEEEEEEEcccc
Confidence 999999999999999999999999999999999999999999998754
No 5
>1gy7_A Nuclear transport factor 2; protein transport; 1.6A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1gyb_A
Probab=100.00 E-value=5e-36 Score=257.73 Aligned_cols=119 Identities=28% Similarity=0.478 Sum_probs=114.2
Q ss_pred CHHHHHHHHHHHHHHHhccCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcCCCCcceEEEeeeeeeeeC-CC
Q 012564 10 SAQVVGNAFVEQYYHILHSTPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLDYKNYKAEIKTADAQNSH-KE 88 (460)
Q Consensus 10 ~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~s~d~q~s~-~~ 88 (460)
++++||++||++||++|+++|+.|++||+++|+|+|++. .+.|+++|.++|.+|||++|+|+|.++|||+++ ++
T Consensus 4 ~~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~~s~~g~-----~~~G~~~I~~~l~~Lp~~~~~h~i~t~D~qp~~~~~ 78 (125)
T 1gy7_A 4 DFNTLAQNFTQFYYNQFDTDRSQLGNLYRNESMLTFETS-----QLQGAKDIVEKLVSLPFQKVQHRITTLDAQPASPYG 78 (125)
T ss_dssp CHHHHHHHHHHHHHHHHHHHGGGGGGGEEEEEEEEETTE-----EEESHHHHHHHHHHSCCSCEEEEEEEEEEEESSTTS
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHhhCCCcEEEECCc-----EecCHHHHHHHHHhCCCcceEEEEEEEEEEEecCCC
Confidence 599999999999999999999999999999999999987 999999999999999999999999999999996 48
Q ss_pred cEEEEEEEEEEcCCC-CcccEEEeeeeeecCCcEEEEccEEEEecC
Q 012564 89 GVTVLVTGCLTGKDN-LRRKFAQSFFLAPQDNGYFVLNDVFRYVDD 133 (460)
Q Consensus 89 gili~V~G~~~~~~~-~~~~F~q~F~L~~~~~~y~v~nDifr~~~~ 133 (460)
||||+|+|.|+.+++ +.|+|+|+|+|++++++|||+||||||++.
T Consensus 79 gili~V~G~~~~~~~~~~~~F~qtF~L~p~~~~~~I~nD~fr~~~~ 124 (125)
T 1gy7_A 79 DVLVMITGDLLIDEEQNPQRFSQVFHLIPDGNSYYVFNDIFRLNYS 124 (125)
T ss_dssp CEEEEEEEEEEETTCSSCEEEEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred eEEEEEEEEEEECCCCCCccEeEEEEEEEeCCEEEEEEEEEEEecC
Confidence 999999999999887 899999999999999999999999999974
No 6
>2qiy_A UBP3-associated protein BRE5; deubiquitylation, ubiquitin-specific processing proteases(UB NTF2, protein-protein recognition; 1.69A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1zx2_A
Probab=100.00 E-value=9.2e-35 Score=259.00 Aligned_cols=129 Identities=22% Similarity=0.371 Sum_probs=116.2
Q ss_pred CCCHHHHHHHHHHHHHHHhccCcchhcccccCCceEEeeCCCCc----------ceeeccHHHHHHHHhcC--CCCcceE
Q 012564 8 PPSAQVVGNAFVEQYYHILHSTPELVFRFYQDSSVLSRPDSNGV----------MTSVTTMEGINQKILSL--DYKNYKA 75 (460)
Q Consensus 8 ~~~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~S~l~~~~~~~~----------~~~~~g~~~I~~~~~~l--~~~~~~~ 75 (460)
.|++++||++||++||++|+++|+.|++||+++|+|+|++.... ...+.|+++|.++|.+| ||++|+|
T Consensus 8 ~p~~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~~s~~~~~~~s~~~~~d~~~~~~~~G~~~I~~~l~~L~~pf~~~~h 87 (154)
T 2qiy_A 8 GVTVQDICFAFLQNYYERMRTDPSKLAYFYASTAELTHTNYQSKSTNEKDDVLPTVKVTGRENINKFFSRNDAKVRSLKL 87 (154)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEEECTTCC----CCSSCCEEEEESHHHHHHHHHHTHHHHTTEEE
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHHHHhhCCCcEEEEccccccccccccccccceEeeCHHHHHHHHHhccCCCCceEE
Confidence 47899999999999999999999999999999999999943211 45889999999999999 9999999
Q ss_pred EEeeeeeeeeCC--CcEEEEEEEEEEcCCCCcccEEEeeeeeecC--CcEEEEccEEEEecCCcc
Q 012564 76 EIKTADAQNSHK--EGVTVLVTGCLTGKDNLRRKFAQSFFLAPQD--NGYFVLNDVFRYVDDGEV 136 (460)
Q Consensus 76 ~i~s~d~q~s~~--~gili~V~G~~~~~~~~~~~F~q~F~L~~~~--~~y~v~nDifr~~~~~~~ 136 (460)
+|.++|||++++ ++|||+|+|.|+.++++.|+|+|||+|++++ ++|||+||||||+++++.
T Consensus 88 ~I~s~D~q~~~~~~~~ilI~V~G~~~~~~~~~r~F~qtFvL~p~~~~~~y~I~ND~fr~~~~~~~ 152 (154)
T 2qiy_A 88 KLDTIDFQYTGHLHKSILIMATGEMFWTGTPVYKFCQTFILLPSSNGSTFDITNDIIRFISNSFK 152 (154)
T ss_dssp EEEEEEEEEESGGGCEEEEEEEEEEEETTCCCEEEEEEEEEEECC---CEEEEEEEEEEECC---
T ss_pred EEEEEEEEEccCCCCEEEEEEEEEEEECCCCCceEEEEEEEEEeCCCCcEEEEEEEEEEEcceec
Confidence 999999999987 8999999999999998999999999999997 489999999999998764
No 7
>3nv0_B NTF2-related export protein; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans}
Probab=100.00 E-value=3.4e-34 Score=253.68 Aligned_cols=116 Identities=25% Similarity=0.392 Sum_probs=110.6
Q ss_pred CHHHHHHHHHHHHHHHhccCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcCCCCcceEEEeeeeeeeeC---
Q 012564 10 SAQVVGNAFVEQYYHILHSTPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLDYKNYKAEIKTADAQNSH--- 86 (460)
Q Consensus 10 ~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~s~d~q~s~--- 86 (460)
.+.+||++||++||++|+++|+.|++||.++|+|+|++. .+.|.++|.++|++||+ |+++|.++|||+++
T Consensus 32 ~a~~vg~~FV~qYY~~~d~~R~~L~~fY~d~S~ls~~g~-----~~~G~~~I~~~l~~Lp~--~~h~I~s~D~qp~~~~~ 104 (154)
T 3nv0_B 32 ELCNESKKFMDVYYDVMDRKREKIGFLYTQVSNAVWNGN-----PINGYDSICEFMKALPS--TQHDIQSLDAQRLPEGV 104 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEETTE-----EEESHHHHHHHHHHSCC--EEEEEEEEEEEECCTTC
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHhcCCcEEEECCe-----ecccHHHHHHHHHhCCC--eEEEEEEEEEEEcCccc
Confidence 456799999999999999999999999999999999987 88999999999999996 69999999999998
Q ss_pred ----CCcEEEEEEEEEEcCCCCcccEEEeeeeeecCCcEEEEccEEEEec
Q 012564 87 ----KEGVTVLVTGCLTGKDNLRRKFAQSFFLAPQDNGYFVLNDVFRYVD 132 (460)
Q Consensus 87 ----~~gili~V~G~~~~~~~~~~~F~q~F~L~~~~~~y~v~nDifr~~~ 132 (460)
+++|||+|+|.|+.++++.|+|+|+|+|++++++|||+||||||+|
T Consensus 105 ~~q~~~~ilI~V~G~l~~~~~~~r~F~QtFvL~p~~~~y~V~NDifR~vd 154 (154)
T 3nv0_B 105 TGDMSGGMLLNVAGAVTVDGDSKRAFTQTLLLGVEDGKYKVKSDRFRYVD 154 (154)
T ss_dssp CGGGTTCEEEEEEEEEEETTSCCEEEEEEEEEEEETTEEEEEEEEEEECC
T ss_pred cCCCCCeEEEEEEEEEEECCCCceeEEEEEEEEEeCCEEEEEeeEEEecC
Confidence 6789999999999998889999999999999999999999999996
No 8
>1jkg_A P15; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_A
Probab=99.98 E-value=2.1e-32 Score=239.90 Aligned_cols=119 Identities=25% Similarity=0.391 Sum_probs=111.6
Q ss_pred CCCHHHHHHHHHHHHHHHhccCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcCCCCcceEEEeeeeeeeeC-
Q 012564 8 PPSAQVVGNAFVEQYYHILHSTPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLDYKNYKAEIKTADAQNSH- 86 (460)
Q Consensus 8 ~~~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~s~d~q~s~- 86 (460)
...+.+||++||++||++|+++|+.|++||+++|+|+|+|. .+.|+++|.++|.+||++ +|+|.++|||++.
T Consensus 10 ~~~a~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~ls~~g~-----~~~G~~~I~~~l~~Lp~~--~h~i~s~d~q~~~~ 82 (140)
T 1jkg_A 10 VDQACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGN-----AVSGQESLSEFFEMLPSS--EFQISVVDCQPVHD 82 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEETTE-----EEESHHHHHHHHHHSCCE--EEEEEEEEEEECCT
T ss_pred hHHHHHHHHHHHHHHHHHHhCCHHHHHHhcCCCcEEEECCe-----eecCHHHHHHHHHhCCCc--eeEEEEEEEEEcCC
Confidence 34678899999999999999999999999999999999986 899999999999999998 6999999999996
Q ss_pred -----CCcEEEEEEEEEEcCCCCcccEEEeeeeeecC----CcEEEEccEEEEecC
Q 012564 87 -----KEGVTVLVTGCLTGKDNLRRKFAQSFFLAPQD----NGYFVLNDVFRYVDD 133 (460)
Q Consensus 87 -----~~gili~V~G~~~~~~~~~~~F~q~F~L~~~~----~~y~v~nDifr~~~~ 133 (460)
+++|||+|+|.|+.++++.|+|+|||+|++++ ++|||+||||||++.
T Consensus 83 ~~~~~~~~ilI~V~G~~~~~~~~~r~F~qtF~L~p~~~p~~~~~~I~nD~frl~~~ 138 (140)
T 1jkg_A 83 EATPSQTTVLVVICGSVKFEGNKQRDFNQNFILTAQASPSNTVWKIASDCFRFQDW 138 (140)
T ss_dssp TTSTTCCEEEEEEEEEEEETTSCCEEEEEEEEEEEECCSSSCEEEEEEEEEEETTT
T ss_pred cccCCCCeEEEEEEEEEEECCCCceeeeEEEEEEecCCCCCCeEEEEeeEEEeecC
Confidence 58999999999999998999999999999874 789999999999986
No 9
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
Probab=99.84 E-value=1.6e-20 Score=179.70 Aligned_cols=126 Identities=17% Similarity=0.217 Sum_probs=108.3
Q ss_pred CCCHHHHHHHHHHHHHHHhccC-cchhcccccCCceEEeeCCCCc----------------------------ceeeccH
Q 012564 8 PPSAQVVGNAFVEQYYHILHST-PELVFRFYQDSSVLSRPDSNGV----------------------------MTSVTTM 58 (460)
Q Consensus 8 ~~~~~~vg~~Fv~~YY~~l~~~-p~~l~~fY~~~S~l~~~~~~~~----------------------------~~~~~g~ 58 (460)
......|+..||++||++++++ |..|..+|+++|+|+|...... ...+.|.
T Consensus 11 ~~~~~~~~~~Fv~~Yy~~fD~~~R~~L~~lY~~~s~fS~~~~~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~~~~G~ 90 (250)
T 1jkg_B 11 TENLKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSIPFIPQNPARSSLAEYFKDSRNVKKLKDPTLRFRLLKHTR 90 (250)
T ss_dssp SHHHHHHHHHHHHHHHHHHTSSCGGGGGGTEEEEEEEEEECCCC------CCCHHHHTTBCCTTTCCCHHHHHHHSEESH
T ss_pred CHHHHHHHHHHHHHHHHHHCcCcHHHHHHhhCcCcEEEEEeCCCCCCccccchhhhhhhccchhcccchhhhhhhhccCH
Confidence 3456689999999999999998 9999999999999999843100 0367899
Q ss_pred HHHHHHHhcCCCCcceEEEe--eeeeeeeCCCcEEEEEEEEEEcCC----CCcccEEEeeeeeec-CCcEEEEccEEEEe
Q 012564 59 EGINQKILSLDYKNYKAEIK--TADAQNSHKEGVTVLVTGCLTGKD----NLRRKFAQSFFLAPQ-DNGYFVLNDVFRYV 131 (460)
Q Consensus 59 ~~I~~~~~~l~~~~~~~~i~--s~d~q~s~~~gili~V~G~~~~~~----~~~~~F~q~F~L~~~-~~~y~v~nDifr~~ 131 (460)
++|.++|.+||. ++|.|. ++|||+..+++|+|+|+|.+...+ ...|.|+|||+|.+. +++|+|+||+||+.
T Consensus 91 ~~I~~~l~~LP~--t~H~~~s~~vD~~~~~~~~i~i~V~G~f~e~~~~~~~~~r~F~rtFvL~p~~~~~~~I~ND~l~l~ 168 (250)
T 1jkg_B 91 LNVVAFLNELPK--TQHDVNSFVVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDELFVR 168 (250)
T ss_dssp HHHHHHHTTSCC--EEECGGGCEEEEEEECSSCEEEEEEEEEEECSSTTTTCEEEEEEEEEEEECTTSSEEEEEEEEEEE
T ss_pred HHHHHHHHhCCC--eeEeccceEEeeeecCCCEEEEEEEEEEEECCCCCCCCceeeEEEEEEEECCCCcEEEEeeEEEEE
Confidence 999999999994 488888 899999988899999999999866 578999999999996 56899999999999
Q ss_pred cCCc
Q 012564 132 DDGE 135 (460)
Q Consensus 132 ~~~~ 135 (460)
+-..
T Consensus 169 ~~s~ 172 (250)
T 1jkg_B 169 NASS 172 (250)
T ss_dssp ECCH
T ss_pred CCCh
Confidence 7643
No 10
>1of5_A MRNA export factor MEX67; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2
Probab=99.83 E-value=1.1e-20 Score=175.95 Aligned_cols=124 Identities=13% Similarity=0.259 Sum_probs=104.7
Q ss_pred CCCHHHHHHHHHHHHHHHhccCcchhcccccCCceEEeeCCCCc----------------------------------ce
Q 012564 8 PPSAQVVGNAFVEQYYHILHSTPELVFRFYQDSSVLSRPDSNGV----------------------------------MT 53 (460)
Q Consensus 8 ~~~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~S~l~~~~~~~~----------------------------------~~ 53 (460)
......|+..||++||++++++|..|..||+++|+|+|...... ..
T Consensus 7 d~~~~~~~~~Fv~~Yy~~fDsdR~~L~~lY~~~S~fS~s~~~~~p~~~~~~~~~~~~~~~Y~~~SRNl~ri~~~~~r~~~ 86 (221)
T 1of5_A 7 NDALGQSSTDFATNFLNLWDNNREQLLNLYSPQSQFSVSVDSTIPPSTVTDSDQTPAFGYYMSSSRNISKVSSEKSIQQR 86 (221)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEEEECCC-------------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHccCHHHHHHhhCcCcEEEEEecCCCCcccccccccccchhhhhhhccchhcccchhhhhhh
Confidence 34567899999999999999999999999999999988763110 13
Q ss_pred eeccHHHHHHHHhcCCCCcceEEE------eeeeeeeeCC-CcEEEEEEEEEEcCCC-----------------------
Q 012564 54 SVTTMEGINQKILSLDYKNYKAEI------KTADAQNSHK-EGVTVLVTGCLTGKDN----------------------- 103 (460)
Q Consensus 54 ~~~g~~~I~~~~~~l~~~~~~~~i------~s~d~q~s~~-~gili~V~G~~~~~~~----------------------- 103 (460)
.+.|.++|.++|.+||. ++|.| .+||||+... ++|||+|+|.+...+.
T Consensus 87 l~~G~~~I~~~l~~LPk--T~H~l~~~~~s~~vD~~~~~~~~~i~itV~G~f~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (221)
T 1of5_A 87 LSIGQESINSIFKTLPK--TKHHLQEQPNEYSMETISYPQINGFVITLHGFFEETGKPELESNKKTGKNNYQKNRRYNHG 164 (221)
T ss_dssp -CBHHHHHHHHHHHSCC--EEECTTTSGGGCEEEEEEEGGGTEEEEEEEEEEEEC-------------------------
T ss_pred hccCHHHHHHHHHhCCC--eeEecccCCCceEEEeEEcCCCCeEEEEEEEEEEECCCccccccccccccccccccccccc
Confidence 56799999999999994 48999 5999999865 6899999999987554
Q ss_pred ---------CcccEEEeeeeeecCCcEEEEccEEEEecC
Q 012564 104 ---------LRRKFAQSFFLAPQDNGYFVLNDVFRYVDD 133 (460)
Q Consensus 104 ---------~~~~F~q~F~L~~~~~~y~v~nDifr~~~~ 133 (460)
..|.|.|||+|.+.+++|+|+||+|++-..
T Consensus 165 ~~~~~~~~~~~rsF~RTFvL~P~~~~~~I~nD~l~ir~~ 203 (221)
T 1of5_A 165 YNSTSNNKLSKKSFDRTWVIVPMNNSVIIASDLLTVRAY 203 (221)
T ss_dssp ----CCSCCEEEEEEEEEEEEEETTEEEEEEEEEEEEEC
T ss_pred ccccccccCCccceEEEEEEEecCCeEEEEeeEEEeecC
Confidence 469999999999998899999999998765
No 11
>1q40_B MEX67, mRNA export factor MEX67; NTF2-fold, nuclear export, translation; 1.95A {Candida albicans} SCOP: d.17.4.2
Probab=99.80 E-value=2.6e-19 Score=166.62 Aligned_cols=126 Identities=13% Similarity=0.241 Sum_probs=102.2
Q ss_pred CCCHHHHHHHHHHHHHHHhccCcchhcccccCCceEEeeCCCCc------------------------------------
Q 012564 8 PPSAQVVGNAFVEQYYHILHSTPELVFRFYQDSSVLSRPDSNGV------------------------------------ 51 (460)
Q Consensus 8 ~~~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~S~l~~~~~~~~------------------------------------ 51 (460)
......|+..||++||++++++|..|..||+++|+|+|......
T Consensus 10 ~~~~~~~~~~Fl~~Yy~~fDsdR~~L~~lY~~~S~fS~s~~~~~p~~~~~~~~~~~~~~~~~~Y~~~SRNl~ri~~~~~r 89 (219)
T 1q40_B 10 DEDSRNLATNFIANYLKLWDANRSELMILYQNESQFSMQVDSSHPHLIESGNSGYSGSTDFGYYLNNSRNLTRVSSIKAR 89 (219)
T ss_dssp ---CHHHHHHHHHHHHHHHHSCGGGGGGGCCTTCEEEEEECTTCCCCCCCB------SCCCTTTTTTCCCTTTCCSHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHccCHHHHHHhhccccEEEEEecCCCCccccccccccccccchhhhhhhccchhcccchhhh
Confidence 34567899999999999999999999999999999998753110
Q ss_pred -ceeeccHHHHHHHHhcCCCCcceEEE------eeeeeeeeC-CCcEEEEEEEEEEcCC---------------------
Q 012564 52 -MTSVTTMEGINQKILSLDYKNYKAEI------KTADAQNSH-KEGVTVLVTGCLTGKD--------------------- 102 (460)
Q Consensus 52 -~~~~~g~~~I~~~~~~l~~~~~~~~i------~s~d~q~s~-~~gili~V~G~~~~~~--------------------- 102 (460)
...+.|.++|.++|.+|| .++|.| .+||||+.. .++|||+|+|.+...+
T Consensus 90 ~~~l~~G~~~I~~~l~~LP--kT~H~l~~~~~s~~vD~~~~p~~~~ilitV~G~f~e~~~~~~~~~~~~~~~~~~~~~~~ 167 (219)
T 1q40_B 90 MAKLSIGQEQIYKSFQQLP--KTRHDIIATPELFSMEVYKFPTLNGIMITLHGSFDEVAQPEVDGSASSAPSGPRGGSRY 167 (219)
T ss_dssp HHTCEEHHHHHHHHHHTSC--EEECCTTTCGGGCEEEEEECSSTTCEEEEEEEEEEEEECCSSCCCC----------CCS
T ss_pred hhhhccCHHHHHHHHHHCC--CeeEecccCCCceEEEeEecCCCCeEEEEEEEEEEECCCcccccccccccccccccccc
Confidence 015679999999999999 458999 599999652 4789999999997533
Q ss_pred ----------CCcccEEEeeeeeec-CCcEEEEccEEEEecCCc
Q 012564 103 ----------NLRRKFAQSFFLAPQ-DNGYFVLNDVFRYVDDGE 135 (460)
Q Consensus 103 ----------~~~~~F~q~F~L~~~-~~~y~v~nDifr~~~~~~ 135 (460)
...|.|.|||+|.+. +++|+|+||+|++-....
T Consensus 168 ~~~~~~~~~~~~~rsF~RtFvL~P~~~~~~~I~nD~l~ir~~~~ 211 (219)
T 1q40_B 168 HSGPKHKRIPLSKKSFDRTFVVIPGPNGSMIVASDTLLIRPYTS 211 (219)
T ss_dssp SSSSCCCCCCCCCEEEEEEEEEECC---CCEEEEEEEEEEECCS
T ss_pred ccccccccccCCccceEEEEEEEECCCCcEEEEeeEEEEecCCC
Confidence 257999999999999 568999999999886633
No 12
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.77 E-value=6.4e-19 Score=166.99 Aligned_cols=79 Identities=19% Similarity=0.185 Sum_probs=72.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCC--CeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEe
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFG--PVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEK 372 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G--~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~ 372 (460)
..++|||+||++++|+++|+++|++|| .|+.|.|+.++.+ .+|||||+|.+.++|++||+.| +..|+|+.|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 568999999999999999999999999 9999999998766 3899999999999999999988 9999999999999
Q ss_pred cccC
Q 012564 373 KKKT 376 (460)
Q Consensus 373 ~~~~ 376 (460)
+++.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8764
No 13
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.75 E-value=4.9e-18 Score=151.09 Aligned_cols=81 Identities=20% Similarity=0.224 Sum_probs=75.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
.+.++|||+|||.++++++|+++|++||.|..|.|+.+..+ .++||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45799999999999999999999999999999999888766 3899999999999999999998 99999999999999
Q ss_pred ccCC
Q 012564 374 KKTR 377 (460)
Q Consensus 374 ~~~~ 377 (460)
++..
T Consensus 117 ~~~~ 120 (156)
T 1h2v_Z 117 AGFK 120 (156)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8753
No 14
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.74 E-value=1e-17 Score=137.66 Aligned_cols=81 Identities=20% Similarity=0.382 Sum_probs=74.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCC--ceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEe
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKG--YCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEK 372 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g--~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~ 372 (460)
..++++|||+|||.++|+++|+++|++||.|..+.|..++.++ +|||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3467899999999999999999999999999999998887664 899999999999999999988 9999999999999
Q ss_pred cccC
Q 012564 373 KKKT 376 (460)
Q Consensus 373 ~~~~ 376 (460)
++|.
T Consensus 96 AkPS 99 (99)
T 4fxv_A 96 ARPS 99 (99)
T ss_dssp CCBC
T ss_pred eeCC
Confidence 9873
No 15
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.72 E-value=2.4e-16 Score=137.17 Aligned_cols=81 Identities=23% Similarity=0.338 Sum_probs=75.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCC--ceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEe
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKG--YCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEK 372 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g--~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~ 372 (460)
....++|||+|||.++++++|+++|++||.|..|.|..++.++ +|||||+|.+.++|.+||+.+ +..|+|+.|+|++
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4567999999999999999999999999999999999887763 899999999999999999998 9999999999999
Q ss_pred cccC
Q 012564 373 KKKT 376 (460)
Q Consensus 373 ~~~~ 376 (460)
+++.
T Consensus 119 a~~~ 122 (139)
T 1u6f_A 119 AASG 122 (139)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 9865
No 16
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.67 E-value=1.5e-16 Score=134.31 Aligned_cols=78 Identities=23% Similarity=0.444 Sum_probs=73.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecccC
Q 012564 299 GHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKKKT 376 (460)
Q Consensus 299 ~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~~~ 376 (460)
.++|||+|||+++++++|+++|++||.|.+|+|+.+..+++|||||+|.+.++|++||+.| +..|+|+.|+|++++++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 4689999999999999999999999999999999887667999999999999999999988 99999999999998865
No 17
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.4e-16 Score=127.85 Aligned_cols=83 Identities=23% Similarity=0.325 Sum_probs=76.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEe
Q 012564 294 HEEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEK 372 (460)
Q Consensus 294 ~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~ 372 (460)
......++|||+|||.++++++|+++|++||.|..|.|..+..+.++||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 345567999999999999999999999999999999988876667899999999999999999987 9999999999999
Q ss_pred cccC
Q 012564 373 KKKT 376 (460)
Q Consensus 373 ~~~~ 376 (460)
+++.
T Consensus 90 a~~~ 93 (103)
T 2cqi_A 90 ATTP 93 (103)
T ss_dssp CCCT
T ss_pred CCCC
Confidence 9875
No 18
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=9.8e-16 Score=126.27 Aligned_cols=83 Identities=20% Similarity=0.312 Sum_probs=76.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 295 EEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 295 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
...+.++|||+|||.++++++|+++|++||.|..|.|..+..+.++||||+|.+.++|++||..+ +..|+|+.|+|+++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 45567999999999999999999999999999999988776667899999999999999999987 99999999999999
Q ss_pred ccCC
Q 012564 374 KKTR 377 (460)
Q Consensus 374 ~~~~ 377 (460)
+++.
T Consensus 91 ~~~~ 94 (103)
T 2cq3_A 91 TARV 94 (103)
T ss_dssp CSSC
T ss_pred ccCC
Confidence 8764
No 19
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=7.3e-16 Score=127.45 Aligned_cols=82 Identities=24% Similarity=0.329 Sum_probs=74.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEe
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEK 372 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~ 372 (460)
....++|||+|||.++++++|+++|++||.|..+.|..+..+ .++||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 345799999999999999999999999999999988877654 4899999999999999999998 9999999999999
Q ss_pred cccCC
Q 012564 373 KKKTR 377 (460)
Q Consensus 373 ~~~~~ 377 (460)
+++..
T Consensus 92 a~~~~ 96 (105)
T 1x5u_A 92 ASAHN 96 (105)
T ss_dssp TTTTS
T ss_pred CCCCC
Confidence 98753
No 20
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=8.5e-16 Score=128.02 Aligned_cols=77 Identities=14% Similarity=0.150 Sum_probs=70.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCC-----eEEEE
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGG-----QEAFV 370 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~g-----r~i~V 370 (460)
...++|||+|||+++++++|+++|++||.|..|.|..+ +||||+|.+.++|++||+.| +..|+| +.|+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 34689999999999999999999999999999887554 79999999999999999998 889999 99999
Q ss_pred EecccCCC
Q 012564 371 EKKKKTRV 378 (460)
Q Consensus 371 ~~~~~~~~ 378 (460)
++++++.+
T Consensus 88 ~~a~~~~~ 95 (108)
T 1x4c_A 88 KVDGPRSP 95 (108)
T ss_dssp EESSCCSC
T ss_pred EeCCCCCC
Confidence 99997644
No 21
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=9.6e-16 Score=126.32 Aligned_cols=83 Identities=18% Similarity=0.246 Sum_probs=75.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEE
Q 012564 295 EEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVE 371 (460)
Q Consensus 295 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~ 371 (460)
...+.++|||+|||.++++++|+++|++||.|..|.|..++.+ .++||||+|.+.++|++||+.+ +..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 4556799999999999999999999999999999999887655 4899999999999999999988 999999999999
Q ss_pred ecccCC
Q 012564 372 KKKKTR 377 (460)
Q Consensus 372 ~~~~~~ 377 (460)
+++++.
T Consensus 91 ~a~~~~ 96 (103)
T 2cq0_A 91 WAKPST 96 (103)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 998753
No 22
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.65 E-value=5.3e-16 Score=129.91 Aligned_cols=80 Identities=15% Similarity=0.182 Sum_probs=74.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
.+.++|||+||++++++++|+++|++||.|..+.|+.+..+ .+|||||+|.+.++|++||+.+ +..|+|+.|+|+.+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35689999999999999999999999999999999998876 4899999999999999999988 99999999999998
Q ss_pred ccC
Q 012564 374 KKT 376 (460)
Q Consensus 374 ~~~ 376 (460)
+..
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 754
No 23
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.4e-15 Score=128.20 Aligned_cols=83 Identities=22% Similarity=0.332 Sum_probs=74.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEE
Q 012564 294 HEEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVE 371 (460)
Q Consensus 294 ~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~ 371 (460)
..+...++|||+|||+++++++|+++|++||.|..|.|..++.+ .++||||+|.+.++|++||+.+...|+|+.|+|+
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~ 91 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVN 91 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEE
Confidence 34567799999999999999999999999999999988877655 4899999999999999999999448999999999
Q ss_pred ecccC
Q 012564 372 KKKKT 376 (460)
Q Consensus 372 ~~~~~ 376 (460)
++++.
T Consensus 92 ~a~~~ 96 (116)
T 2cqd_A 92 LAYLG 96 (116)
T ss_dssp ESTTT
T ss_pred EcccC
Confidence 99764
No 24
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1e-15 Score=126.21 Aligned_cols=84 Identities=19% Similarity=0.371 Sum_probs=75.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEe
Q 012564 294 HEEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEK 372 (460)
Q Consensus 294 ~~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~ 372 (460)
....+.++|||+|||+++++++|+++|++||.|..+.|..+....++||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 345578999999999999999999999999999999988872225899999999999999999987 9999999999999
Q ss_pred cccCC
Q 012564 373 KKKTR 377 (460)
Q Consensus 373 ~~~~~ 377 (460)
++++.
T Consensus 90 a~~~~ 94 (103)
T 2d9p_A 90 AQRKE 94 (103)
T ss_dssp CSSCC
T ss_pred ecccc
Confidence 98764
No 25
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1e-15 Score=124.07 Aligned_cols=80 Identities=18% Similarity=0.296 Sum_probs=73.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecc
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKK 374 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~ 374 (460)
..++|||+|||.++++++|+++|++||.|..+.|..+..+ .++||||+|.+.++|++||+.+ +..|+|+.|+|++++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 4689999999999999999999999999999988877654 4899999999999999999987 999999999999998
Q ss_pred cCC
Q 012564 375 KTR 377 (460)
Q Consensus 375 ~~~ 377 (460)
++.
T Consensus 84 ~~~ 86 (95)
T 2dnz_A 84 ERL 86 (95)
T ss_dssp CCC
T ss_pred ccc
Confidence 753
No 26
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.65 E-value=3.6e-15 Score=125.41 Aligned_cols=83 Identities=18% Similarity=0.360 Sum_probs=75.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEE
Q 012564 295 EEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVE 371 (460)
Q Consensus 295 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~ 371 (460)
...+.++|||+|||.++++++|+++|++||.|..|.|+.+..+ .++||||+|.+.++|++||+.+ +..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4456799999999999999999999999999999999888655 3899999999999999999998 999999999999
Q ss_pred ecccCC
Q 012564 372 KKKKTR 377 (460)
Q Consensus 372 ~~~~~~ 377 (460)
+++++.
T Consensus 91 ~a~~~~ 96 (115)
T 2dgo_A 91 WATRKP 96 (115)
T ss_dssp ESSCCC
T ss_pred EccCCC
Confidence 998763
No 27
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.1e-15 Score=124.99 Aligned_cols=81 Identities=20% Similarity=0.254 Sum_probs=74.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
.+.++|||+|||.++++++|+++|++||.|..+.|..+..+ .++||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45799999999999999999999999999999988777644 4899999999999999999888 99999999999999
Q ss_pred ccCC
Q 012564 374 KKTR 377 (460)
Q Consensus 374 ~~~~ 377 (460)
+++.
T Consensus 86 ~~~~ 89 (99)
T 1whw_A 86 TIKK 89 (99)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 8764
No 28
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.64 E-value=4.2e-16 Score=133.33 Aligned_cols=82 Identities=16% Similarity=0.267 Sum_probs=74.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEe
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEK 372 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~ 372 (460)
..+.++|||+|||+++++++|+++|++||.|..|.|+.+..+ .++||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 445799999999999999999999999999999988877655 4899999999999999999987 9999999999999
Q ss_pred cccCC
Q 012564 373 KKKTR 377 (460)
Q Consensus 373 ~~~~~ 377 (460)
+++..
T Consensus 99 a~~~~ 103 (126)
T 3ex7_B 99 CFVRG 103 (126)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98753
No 29
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.64 E-value=1.1e-15 Score=128.54 Aligned_cols=82 Identities=28% Similarity=0.472 Sum_probs=75.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEe
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEK 372 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~ 372 (460)
..+.++|||+|||.++++++|+++|++||.|..+.|+.+..+ .++||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345789999999999999999999999999999999888755 4899999999999999999888 9999999999999
Q ss_pred cccCC
Q 012564 373 KKKTR 377 (460)
Q Consensus 373 ~~~~~ 377 (460)
++++.
T Consensus 102 a~~~~ 106 (115)
T 2cpz_A 102 KRSKN 106 (115)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 98763
No 30
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.7e-15 Score=123.84 Aligned_cols=82 Identities=26% Similarity=0.400 Sum_probs=73.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEEec
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEKK 373 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~~~ 373 (460)
..+.++|||+|||.++++++|+++|++||.|..+.|+.+..+ .++||||+|.+.++|++||+..+..|+|+.|+|+++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 346799999999999999999999999999999988877655 489999999999999999994499999999999999
Q ss_pred ccCC
Q 012564 374 KKTR 377 (460)
Q Consensus 374 ~~~~ 377 (460)
+++.
T Consensus 87 ~~~~ 90 (99)
T 2dgs_A 87 EPRD 90 (99)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 8753
No 31
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.64 E-value=1.9e-15 Score=127.72 Aligned_cols=80 Identities=33% Similarity=0.545 Sum_probs=72.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEE
Q 012564 295 EEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVE 371 (460)
Q Consensus 295 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~ 371 (460)
...+.++|||+|||+++++++|+++|++||.|..+.|..++.+ .++||||+|.+.++|++||+.+ +..|+|+.|+|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 4456799999999999999999999999999999988877654 4899999999999999999998 999999999999
Q ss_pred ecc
Q 012564 372 KKK 374 (460)
Q Consensus 372 ~~~ 374 (460)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 875
No 32
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.64 E-value=1e-16 Score=129.52 Aligned_cols=79 Identities=18% Similarity=0.309 Sum_probs=71.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCC-CeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC--CCCCCCeEEEEEec
Q 012564 299 GHSIYIRNLPDTMTVASLEVEFKKFG-PVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS--PITIGGQEAFVEKK 373 (460)
Q Consensus 299 ~~~lfV~nLp~~vte~~L~~~F~~~G-~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~--~~~i~gr~i~V~~~ 373 (460)
+++|||+|||.++|+++|+++|++|| .|++|.|+.++.+ .+|||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 7999888877665 4899999999999999999987 56799999999999
Q ss_pred ccCC
Q 012564 374 KKTR 377 (460)
Q Consensus 374 ~~~~ 377 (460)
+++.
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8764
No 33
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.64 E-value=1.5e-15 Score=128.28 Aligned_cols=82 Identities=21% Similarity=0.318 Sum_probs=74.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
..+.++|||+|||.++++++|+++|++||.|..|.|..+... .+|||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 345689999999999999999999999999999988877633 4899999999999999999998 99999999999999
Q ss_pred ccCC
Q 012564 374 KKTR 377 (460)
Q Consensus 374 ~~~~ 377 (460)
++..
T Consensus 84 ~~~~ 87 (116)
T 2fy1_A 84 KKPS 87 (116)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 8653
No 34
>3nv0_A Nuclear RNA export factor 2; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans}
Probab=99.64 E-value=1.8e-15 Score=139.71 Aligned_cols=123 Identities=13% Similarity=0.150 Sum_probs=99.5
Q ss_pred CCHHHHHHHHHHHHHHHhccC-----cchhccccc-CCceEE--eeCCC-----------------------C-c-----
Q 012564 9 PSAQVVGNAFVEQYYHILHST-----PELVFRFYQ-DSSVLS--RPDSN-----------------------G-V----- 51 (460)
Q Consensus 9 ~~~~~vg~~Fv~~YY~~l~~~-----p~~l~~fY~-~~S~l~--~~~~~-----------------------~-~----- 51 (460)
.....+...|+.+||.++++. |..|..+|+ ++|+|+ .+-.. - .
T Consensus 10 ~~~~~~v~~Fl~~yf~~yD~~d~~~~R~~Ll~~Y~~~~a~FSltv~~~~~p~~~~~~~~~~~~~~Y~~~SRNl~k~~~~~ 89 (205)
T 3nv0_A 10 DEVRTLVEEFIITYYKIYDGADGQQTRKQLLDAYDTNNSTFTHTVVCLWDPIKFVMYPDSESYRMYLRTSHNVLNQEYFA 89 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTHHHHGGGGGGGBCSSSCEEEEEEECCCCSSSCCCCSCHHHHHHHHHTCCCGGGCCTTT
T ss_pred HHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHhhCccCcEEEEEecCCCCcccccccccccchhhhhhhccccccccccH
Confidence 345679999999999999987 999999999 688763 21110 0 0
Q ss_pred ----ceeeccHHHHHHHHhcCCCCcceEEEee--eeeeeeCCCcEEEEEEEEEEcC---------CCCcccEEEeeeeee
Q 012564 52 ----MTSVTTMEGINQKILSLDYKNYKAEIKT--ADAQNSHKEGVTVLVTGCLTGK---------DNLRRKFAQSFFLAP 116 (460)
Q Consensus 52 ----~~~~~g~~~I~~~~~~l~~~~~~~~i~s--~d~q~s~~~gili~V~G~~~~~---------~~~~~~F~q~F~L~~ 116 (460)
..-.+|.++|.++|.+||.. +|.+.+ ||||+..++.|+|+|+|.+... ....|.|+|||+|.|
T Consensus 90 ~~r~~~L~~G~~~I~~~L~~LP~T--~H~~~s~~vD~~p~~~~~l~i~V~G~f~e~~~~~~~~~~~~~~r~FsRtFiL~P 167 (205)
T 3nv0_A 90 ANRASRISHGAMDIVVALSRLPAT--IHLMDTFVVDVFLVSATLLGFTLHGTFRDGPSAIKPENTEEHDNYFTRTFMVAP 167 (205)
T ss_dssp TSSCCSCEEHHHHHHHHHHHSCCE--EECGGGCEEEEEEECSSCEEEEEEEEEEETHHHHSCCSCSTTCEEEEEEEEEEE
T ss_pred HHHHHHHhhCHHHHHHHHHhCCCe--EEecCceEEEEEEeCCCeEEEEEEEEEEEcccccccccCCCCCceeEEEEEEEE
Confidence 11346999999999999955 899886 8999998888999999999965 356799999999999
Q ss_pred cC-CcEEEEccEEEEecC
Q 012564 117 QD-NGYFVLNDVFRYVDD 133 (460)
Q Consensus 117 ~~-~~y~v~nDifr~~~~ 133 (460)
.+ ++|+|+||++-.-..
T Consensus 168 ~~~g~~~I~ND~L~Ir~~ 185 (205)
T 3nv0_A 168 RGEGKVAIVSDQLFISSM 185 (205)
T ss_dssp CSTTCEEEEEEEEEEECC
T ss_pred CCCCcEEEEecEEEeeCC
Confidence 85 689999999965543
No 35
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=9e-16 Score=126.49 Aligned_cols=82 Identities=23% Similarity=0.249 Sum_probs=74.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEe
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEK 372 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~ 372 (460)
..+.++|||+|||.++++++|+++|++||.|..+.|..+..+ .++||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 445799999999999999999999999999999988877665 4899999999999999999987 9999999999999
Q ss_pred cccCC
Q 012564 373 KKKTR 377 (460)
Q Consensus 373 ~~~~~ 377 (460)
+++..
T Consensus 90 a~~~~ 94 (103)
T 2dnm_A 90 ARYGR 94 (103)
T ss_dssp CSSCC
T ss_pred CCcCC
Confidence 98653
No 36
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.63 E-value=5e-15 Score=152.99 Aligned_cols=81 Identities=16% Similarity=0.346 Sum_probs=74.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
...++|||+|||+++|+++|+++|++||.|+.|.|+.+..+ .+|||||+|.+.++|++||..| +..|+|+.|.|+++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34689999999999999999999999999999999888655 4899999999999999999998 99999999999999
Q ss_pred ccCC
Q 012564 374 KKTR 377 (460)
Q Consensus 374 ~~~~ 377 (460)
++..
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 8763
No 37
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.63 E-value=1.4e-15 Score=121.32 Aligned_cols=79 Identities=24% Similarity=0.406 Sum_probs=71.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCC--ceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEEe
Q 012564 295 EEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKG--YCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEK 372 (460)
Q Consensus 295 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g--~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~~ 372 (460)
.+.+.++|||+|||+++++++|+++|++||.|..+.|+.+..++ +|||||+|.+.++|++||+.++..|+|+.|+|++
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKK 86 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34567999999999999999999999999999999998887653 8999999999999999998778889999999986
Q ss_pred c
Q 012564 373 K 373 (460)
Q Consensus 373 ~ 373 (460)
+
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 4
No 38
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=2.3e-15 Score=123.40 Aligned_cols=83 Identities=23% Similarity=0.278 Sum_probs=74.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEe
Q 012564 295 EEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEK 372 (460)
Q Consensus 295 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~ 372 (460)
...+.++|||+|||.++++++|+++|++||.|..+.|..+... .++||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456789999999999999999999999999999999888733 4899999999999999999887 9999999999999
Q ss_pred cccCC
Q 012564 373 KKKTR 377 (460)
Q Consensus 373 ~~~~~ 377 (460)
++++.
T Consensus 93 a~~~~ 97 (100)
T 2do4_A 93 SNSGP 97 (100)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 98754
No 39
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.1e-15 Score=125.68 Aligned_cols=82 Identities=21% Similarity=0.366 Sum_probs=74.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEe
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEK 372 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~ 372 (460)
..+.++|||+|||.++++++|+++|++||.|..+.|..+..+ .++||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 446799999999999999999999999999999988777655 4899999999999999999887 9999999999999
Q ss_pred cccCC
Q 012564 373 KKKTR 377 (460)
Q Consensus 373 ~~~~~ 377 (460)
++++.
T Consensus 89 a~~~~ 93 (102)
T 1x5s_A 89 AGKSS 93 (102)
T ss_dssp EECCC
T ss_pred CCCCC
Confidence 98753
No 40
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=7.2e-16 Score=126.78 Aligned_cols=82 Identities=22% Similarity=0.317 Sum_probs=74.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEe
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEK 372 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~ 372 (460)
..+.++|||+|||.++++++|+++|++||.|..+.|+.+..+ .++||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 446799999999999999999999999999999888777555 4899999999999999999987 9999999999999
Q ss_pred cccCC
Q 012564 373 KKKTR 377 (460)
Q Consensus 373 ~~~~~ 377 (460)
+++..
T Consensus 89 a~~~~ 93 (102)
T 2cqb_A 89 AKPMR 93 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98764
No 41
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=3.2e-15 Score=123.24 Aligned_cols=80 Identities=18% Similarity=0.286 Sum_probs=72.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEe
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEK 372 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~ 372 (460)
....++|||+|||+++++++|+++|++|| |..|.|+.+..+ .+|||||+|.+.++|++|| .+ +..|+|+.|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 44579999999999999999999999997 999999888765 3899999999999999999 66 9999999999999
Q ss_pred cccCC
Q 012564 373 KKKTR 377 (460)
Q Consensus 373 ~~~~~ 377 (460)
++++.
T Consensus 90 a~~~~ 94 (103)
T 2dng_A 90 AEGRK 94 (103)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 98753
No 42
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.1e-15 Score=124.07 Aligned_cols=80 Identities=24% Similarity=0.270 Sum_probs=73.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEE-EEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQG-GIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~-~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
..++|||+|||.++++++|+++|++||.|..+ .|..+..+ .++||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 46899999999999999999999999999998 88777554 4899999999999999999988 99999999999999
Q ss_pred ccCC
Q 012564 374 KKTR 377 (460)
Q Consensus 374 ~~~~ 377 (460)
+++.
T Consensus 84 ~~~~ 87 (96)
T 1x5t_A 84 FKKD 87 (96)
T ss_dssp CCCC
T ss_pred cccC
Confidence 8753
No 43
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.8e-15 Score=123.51 Aligned_cols=81 Identities=25% Similarity=0.408 Sum_probs=74.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCC---C--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEE
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHN---K--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFV 370 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~---~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V 370 (460)
.+.++|||+|||+++++++|+++|++||.|..+.|..+.. + .++||||+|.+.++|++||+.+ +..|+|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3568999999999999999999999999999999988766 2 4899999999999999999998 99999999999
Q ss_pred EecccCC
Q 012564 371 EKKKKTR 377 (460)
Q Consensus 371 ~~~~~~~ 377 (460)
++++++.
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9998753
No 44
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3e-15 Score=124.71 Aligned_cols=81 Identities=26% Similarity=0.438 Sum_probs=71.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecc
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKK 374 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~ 374 (460)
....++|||+|||.++++++|+++|++||.|..|.|..+. ..++||||+|.+.++|++||+.+ +..|+|+.|+|++++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR-GGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSS-SSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 4457999999999999999999999999999998774332 25899999999999999999888 999999999999998
Q ss_pred cCC
Q 012564 375 KTR 377 (460)
Q Consensus 375 ~~~ 377 (460)
+.+
T Consensus 98 ~~~ 100 (109)
T 1x4a_A 98 SGR 100 (109)
T ss_dssp CCC
T ss_pred cCC
Confidence 653
No 45
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.1e-15 Score=124.59 Aligned_cols=80 Identities=15% Similarity=0.228 Sum_probs=73.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHH----HHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEE
Q 012564 297 VEGHSIYIRNLPDTMTVASLE----VEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVE 371 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~----~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~ 371 (460)
.+.++|||+|||+++++++|+ ++|++||.|..+.|..++.+ ++||||+|.+.++|++||+.+ +..|+|+.|+|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~-rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY-QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST-TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC-CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 456899999999999999999 99999999999998877766 899999999999999999988 999999999999
Q ss_pred ecccCC
Q 012564 372 KKKKTR 377 (460)
Q Consensus 372 ~~~~~~ 377 (460)
++++..
T Consensus 86 ~a~~~~ 91 (96)
T 2dgx_A 86 LATGAS 91 (96)
T ss_dssp ECCCSS
T ss_pred EcCCCC
Confidence 998753
No 46
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.2e-15 Score=124.41 Aligned_cols=80 Identities=18% Similarity=0.296 Sum_probs=72.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC---CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEE
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK---GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVE 371 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~---g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~ 371 (460)
....++|||+|||+++++++|+++|++|| |..|.|+.+..+ .++||||+|.+.++|++|| .+ +..|+|+.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 34569999999999999999999999999 999998887654 3899999999999999999 77 999999999999
Q ss_pred ecccCC
Q 012564 372 KKKKTR 377 (460)
Q Consensus 372 ~~~~~~ 377 (460)
+++++.
T Consensus 90 ~a~~~~ 95 (104)
T 1wi8_A 90 VADQAQ 95 (104)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 998753
No 47
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.62 E-value=4.4e-15 Score=122.72 Aligned_cols=82 Identities=15% Similarity=0.180 Sum_probs=74.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHC-CCCCCC---eEEEE
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQAS-PITIGG---QEAFV 370 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~-~~~i~g---r~i~V 370 (460)
....++|||+|||.++++++|+++|++||.|..+.|..+... .++||||+|.+.++|++||+.+ +..|.+ +.|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 346799999999999999999999999999999999887643 3899999999999999999988 888887 99999
Q ss_pred EecccCC
Q 012564 371 EKKKKTR 377 (460)
Q Consensus 371 ~~~~~~~ 377 (460)
+++++..
T Consensus 92 ~~a~~~~ 98 (105)
T 2dnh_A 92 KFADTDK 98 (105)
T ss_dssp EESCSSC
T ss_pred EECccCc
Confidence 9998764
No 48
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=5.2e-15 Score=121.91 Aligned_cols=82 Identities=18% Similarity=0.220 Sum_probs=73.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEEe
Q 012564 295 EEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEK 372 (460)
Q Consensus 295 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~~ 372 (460)
...+.++|||+|||+++++++|+++|++||.|..|.|+.+..+ .+|||||+|.+.++|++||.. ++.|+|+.|+|++
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEEEC
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEEEEe
Confidence 3456789999999999999999999999999999999888765 389999999999999999995 6789999999999
Q ss_pred cccCC
Q 012564 373 KKKTR 377 (460)
Q Consensus 373 ~~~~~ 377 (460)
++++.
T Consensus 90 a~~~~ 94 (103)
T 2cqg_A 90 PNSKQ 94 (103)
T ss_dssp CCTTC
T ss_pred cCCCC
Confidence 98753
No 49
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2.1e-15 Score=124.74 Aligned_cols=83 Identities=20% Similarity=0.301 Sum_probs=75.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEEe
Q 012564 295 EEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEK 372 (460)
Q Consensus 295 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~~ 372 (460)
...+.++|||+|||+++++++|+++|++||.|..|.|+.++.+ .++||||+|.+.++|++||+..+..|+|+.|+|++
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKP 91 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 4556799999999999999999999999999999999888665 38999999999999999999888899999999999
Q ss_pred cccCC
Q 012564 373 KKKTR 377 (460)
Q Consensus 373 ~~~~~ 377 (460)
++++.
T Consensus 92 a~~~~ 96 (105)
T 2dh8_A 92 CTPRG 96 (105)
T ss_dssp SCCSS
T ss_pred ccCCC
Confidence 98753
No 50
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.62 E-value=2.1e-15 Score=118.98 Aligned_cols=78 Identities=21% Similarity=0.355 Sum_probs=72.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCC--ceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEeccc
Q 012564 299 GHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKG--YCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKKK 375 (460)
Q Consensus 299 ~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g--~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~~ 375 (460)
+++|||+|||.++++++|+++|++||.|..+.|..+..++ +|||||+|.+.++|++||+.+ +..|+|+.|+|+++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 3689999999999999999999999999999998886553 899999999999999999987 9999999999999986
Q ss_pred C
Q 012564 376 T 376 (460)
Q Consensus 376 ~ 376 (460)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 51
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=3.1e-15 Score=123.38 Aligned_cols=81 Identities=15% Similarity=0.247 Sum_probs=73.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhc-CCCeeEEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHC-CCC-CCCeEEEEEe
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKK-FGPVKQGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQAS-PIT-IGGQEAFVEK 372 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~-~G~v~~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~-~~~-i~gr~i~V~~ 372 (460)
...++|||+|||+++++++|+++|++ ||.|..+.|..+... .++||||+|.+.++|++||+.+ +.. |+|+.|+|++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 45689999999999999999999999 999999999888733 4899999999999999999998 888 9999999999
Q ss_pred cccCC
Q 012564 373 KKKTR 377 (460)
Q Consensus 373 ~~~~~ 377 (460)
++++.
T Consensus 87 a~~~~ 91 (104)
T 2dhg_A 87 AIPKA 91 (104)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 98653
No 52
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=9.1e-16 Score=128.13 Aligned_cols=81 Identities=21% Similarity=0.335 Sum_probs=74.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecc
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKK 374 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~ 374 (460)
..+.++|||+|||.++++++|+++|++||.|..+.|..+..+.+|||||+|.+.++|++|++.+ +..|+|+.|+|++++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 105 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 105 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 4567999999999999999999999999999999887776556899999999999999999987 999999999999988
Q ss_pred cC
Q 012564 375 KT 376 (460)
Q Consensus 375 ~~ 376 (460)
++
T Consensus 106 ~~ 107 (109)
T 2err_A 106 AR 107 (109)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 53
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.62 E-value=2e-15 Score=124.96 Aligned_cols=83 Identities=13% Similarity=0.182 Sum_probs=74.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCC---CCeEE
Q 012564 295 EEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITI---GGQEA 368 (460)
Q Consensus 295 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i---~gr~i 368 (460)
...+.++|||+|||.++++++|+++|++||.|..|.|+.+..+ .++||||+|.+.++|++||+.+ +..+ +++.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 3456799999999999999999999999999999988777655 4899999999999999999988 7777 89999
Q ss_pred EEEecccCC
Q 012564 369 FVEKKKKTR 377 (460)
Q Consensus 369 ~V~~~~~~~ 377 (460)
+|+++++..
T Consensus 89 ~v~~a~~~~ 97 (106)
T 2dgp_A 89 QVKPADSES 97 (106)
T ss_dssp EEEECCCCS
T ss_pred EEEECCccc
Confidence 999998753
No 54
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.61 E-value=1.8e-15 Score=120.42 Aligned_cols=79 Identities=20% Similarity=0.380 Sum_probs=71.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecc
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKK 374 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~ 374 (460)
+.++|||+|||.++++++|+++|++||.|..+.|..+..+ .++||||+|.+.++|++||+.+ +..|+|+.|+|++++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 5689999999999999999999999999999999887655 4899999999999999999987 999999999999988
Q ss_pred cC
Q 012564 375 KT 376 (460)
Q Consensus 375 ~~ 376 (460)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 64
No 55
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.61 E-value=2.6e-15 Score=120.97 Aligned_cols=81 Identities=25% Similarity=0.382 Sum_probs=73.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEeccc
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKKK 375 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~~ 375 (460)
.+.++|||+|||.++++++|+++|++||.|..+.|..+....++||||+|.+.++|++||+.+ +..|+|+.|+|+++++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 457999999999999999999999999999999887753335899999999999999999987 9999999999999987
Q ss_pred CC
Q 012564 376 TR 377 (460)
Q Consensus 376 ~~ 377 (460)
..
T Consensus 86 ~~ 87 (92)
T 2dgv_A 86 AS 87 (92)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 56
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.6e-15 Score=121.65 Aligned_cols=80 Identities=19% Similarity=0.262 Sum_probs=73.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEe
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEK 372 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~ 372 (460)
....++|||+|||.++++++|+++|++||.|..+.|..+..+ .++||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 445789999999999999999999999999999999888765 3899999999999999999987 9999999999998
Q ss_pred ccc
Q 012564 373 KKK 375 (460)
Q Consensus 373 ~~~ 375 (460)
++.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 874
No 57
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=3.8e-15 Score=123.48 Aligned_cols=83 Identities=20% Similarity=0.334 Sum_probs=74.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEe-CCC--CceEEEEEEcCHHHHHHHHHHC--CCCCCCeEEE
Q 012564 295 EEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVR-HNK--GYCFGFVEFQSSSSVDNAIQAS--PITIGGQEAF 369 (460)
Q Consensus 295 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~-~~~--g~g~aFV~F~~~e~a~~Al~~~--~~~i~gr~i~ 369 (460)
.....++|||+|||.++++++|+++|++||.|..|.|..+ ..+ .++||||+|.+.++|++||+.+ +..|+|+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 4556799999999999999999999999999999888777 333 4899999999999999999986 8999999999
Q ss_pred EEecccCC
Q 012564 370 VEKKKKTR 377 (460)
Q Consensus 370 V~~~~~~~ 377 (460)
|++++++.
T Consensus 91 v~~a~~~~ 98 (107)
T 2cph_A 91 LEWADSEV 98 (107)
T ss_dssp EEECCCCC
T ss_pred EEeCCCCC
Confidence 99998753
No 58
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.61 E-value=2.1e-15 Score=119.54 Aligned_cols=78 Identities=22% Similarity=0.318 Sum_probs=71.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
.+.++|||+|||.++++++|+++|++||.|..+.|..+..+ .++||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45799999999999999999999999999999998888665 3899999999999999999887 99999999999987
Q ss_pred c
Q 012564 374 K 374 (460)
Q Consensus 374 ~ 374 (460)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 59
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.9e-15 Score=121.16 Aligned_cols=79 Identities=22% Similarity=0.259 Sum_probs=72.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEe
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEK 372 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~ 372 (460)
....++|||+|||.++++++|+++|++||.|..+.|..+..+ .++||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 456789999999999999999999999999999988777664 4899999999999999999988 9999999999998
Q ss_pred cc
Q 012564 373 KK 374 (460)
Q Consensus 373 ~~ 374 (460)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 60
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.6e-15 Score=123.64 Aligned_cols=78 Identities=15% Similarity=0.198 Sum_probs=69.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC---CCCCCCeEEEEE
Q 012564 295 EEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS---PITIGGQEAFVE 371 (460)
Q Consensus 295 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~---~~~i~gr~i~V~ 371 (460)
...+.++|||+|||+++++++|+++|++||.|..+.|+. .++||||+|.+.++|++||+.+ +..|+|+.|+|+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~----~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK----GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC----CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 345678999999999999999999999999999986632 3789999999999999999975 678999999999
Q ss_pred ecccC
Q 012564 372 KKKKT 376 (460)
Q Consensus 372 ~~~~~ 376 (460)
+++++
T Consensus 87 ~a~~~ 91 (101)
T 2cq1_A 87 YSNHK 91 (101)
T ss_dssp ECSCS
T ss_pred EcCcc
Confidence 99865
No 61
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=8.3e-16 Score=127.11 Aligned_cols=76 Identities=20% Similarity=0.251 Sum_probs=68.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC---CCCCCCeEEEEEec
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS---PITIGGQEAFVEKK 373 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~---~~~i~gr~i~V~~~ 373 (460)
.+.++|||+|||+++++++|+++|++||.|++|.|+. .+|||||+|++.++|++||+.+ +..|+|+.|+|+++
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~----~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK----GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 4579999999999999999999999999999988753 3799999999999999999965 47899999999999
Q ss_pred ccC
Q 012564 374 KKT 376 (460)
Q Consensus 374 ~~~ 376 (460)
+++
T Consensus 90 ~~~ 92 (105)
T 1sjq_A 90 NHK 92 (105)
T ss_dssp SSS
T ss_pred CCC
Confidence 875
No 62
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.61 E-value=2.2e-15 Score=134.16 Aligned_cols=80 Identities=15% Similarity=0.155 Sum_probs=72.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCC--CeeEEEEEEeCCCC--ceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEE
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFG--PVKQGGIQVRHNKG--YCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVE 371 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G--~v~~~~i~~~~~~g--~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~ 371 (460)
.+.++|||+|||+++++++|+++|++|| .|..|.|+.++.++ +|||||+|.+.++|++||+.+ +..|+|+.|+|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 99999999887664 899999999999999999998 999999999999
Q ss_pred ecccC
Q 012564 372 KKKKT 376 (460)
Q Consensus 372 ~~~~~ 376 (460)
++.+.
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 98764
No 63
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.2e-15 Score=123.78 Aligned_cols=81 Identities=17% Similarity=0.319 Sum_probs=74.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCC--ceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEe
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKG--YCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEK 372 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g--~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~ 372 (460)
..+.++|||+|||.++++++|+++|++||.|..+.|..+..++ +|||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 3457899999999999999999999999999999998887653 899999999999999999987 9999999999999
Q ss_pred cccC
Q 012564 373 KKKT 376 (460)
Q Consensus 373 ~~~~ 376 (460)
++++
T Consensus 100 a~~~ 103 (106)
T 1p27_B 100 CFVR 103 (106)
T ss_dssp SEES
T ss_pred ecCC
Confidence 9865
No 64
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.61 E-value=7.6e-16 Score=123.92 Aligned_cols=77 Identities=19% Similarity=0.191 Sum_probs=67.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCC--CeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecc
Q 012564 300 HSIYIRNLPDTMTVASLEVEFKKFG--PVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKK 374 (460)
Q Consensus 300 ~~lfV~nLp~~vte~~L~~~F~~~G--~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~ 374 (460)
.+|||+|||+++++++|+++|++|| .|..+.|+.++.+ .+|||||+|.+.++|++||+.+ +..|+|+.|+|..+.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 9999999888766 3899999999999999999988 999999999999998
Q ss_pred cC
Q 012564 375 KT 376 (460)
Q Consensus 375 ~~ 376 (460)
+.
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 75
No 65
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.61 E-value=4.8e-15 Score=122.22 Aligned_cols=75 Identities=20% Similarity=0.339 Sum_probs=68.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEeccc
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKKK 375 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~~ 375 (460)
...++|||+|||.++++++|+++|++||.|..+.|. ++||||+|.+.++|++||+.| +..|+|+.|+|+++++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 456899999999999999999999999999998773 469999999999999999987 9999999999999987
Q ss_pred CC
Q 012564 376 TR 377 (460)
Q Consensus 376 ~~ 377 (460)
..
T Consensus 83 ~~ 84 (103)
T 2dgu_A 83 PD 84 (103)
T ss_dssp CC
T ss_pred Cc
Confidence 63
No 66
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.2e-15 Score=126.97 Aligned_cols=82 Identities=23% Similarity=0.328 Sum_probs=74.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEEec
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEKK 373 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~~~ 373 (460)
..+.++|||+|||+++++++|+++|++||.|..|.|+.+..+ .+|||||+|.+.++|++||+..+..|+|+.|+|+++
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEEC
Confidence 345689999999999999999999999999999998887655 489999999999999999998888999999999999
Q ss_pred ccCC
Q 012564 374 KKTR 377 (460)
Q Consensus 374 ~~~~ 377 (460)
+++.
T Consensus 104 ~~~~ 107 (116)
T 1x4b_A 104 VARE 107 (116)
T ss_dssp SSCC
T ss_pred CCCc
Confidence 8753
No 67
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=7.7e-15 Score=121.51 Aligned_cols=77 Identities=22% Similarity=0.291 Sum_probs=68.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC---CCCCCCeEEEEEe
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS---PITIGGQEAFVEK 372 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~---~~~i~gr~i~V~~ 372 (460)
..+.++|||+|||+++++++|+++|++||.|..+.|+. .++||||+|++.++|.+||+.+ ++.|+|+.|+|++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~----~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP----FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 44578999999999999999999999999999976632 4789999999999999999976 4569999999999
Q ss_pred cccC
Q 012564 373 KKKT 376 (460)
Q Consensus 373 ~~~~ 376 (460)
++.+
T Consensus 88 a~~~ 91 (104)
T 1wex_A 88 STSK 91 (104)
T ss_dssp CSSS
T ss_pred ccCc
Confidence 9865
No 68
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.60 E-value=5.1e-15 Score=123.42 Aligned_cols=81 Identities=19% Similarity=0.335 Sum_probs=74.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCC--ceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEe
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKG--YCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEK 372 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g--~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~ 372 (460)
....++|||+|||.++++++|+++|++||.|..+.|..+..++ +|||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3456999999999999999999999999999999998887663 899999999999999999987 9999999999999
Q ss_pred cccC
Q 012564 373 KKKT 376 (460)
Q Consensus 373 ~~~~ 376 (460)
++++
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 9864
No 69
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=3.3e-15 Score=122.07 Aligned_cols=80 Identities=14% Similarity=0.160 Sum_probs=73.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCee-EEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeE----E
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVK-QGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQE----A 368 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~-~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~----i 368 (460)
...++|||+|||.++++++|+++|++||.|. .+.|..++.+ .++||||+|.+.++|++||+.+ +..|+|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4579999999999999999999999999999 9999888765 3899999999999999999988 99999999 9
Q ss_pred EEEecccC
Q 012564 369 FVEKKKKT 376 (460)
Q Consensus 369 ~V~~~~~~ 376 (460)
+|+++++.
T Consensus 87 ~v~~a~~~ 94 (99)
T 2div_A 87 KLNYATYS 94 (99)
T ss_dssp CEEETTCC
T ss_pred EEeecCCC
Confidence 99999864
No 70
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.60 E-value=4.7e-15 Score=121.34 Aligned_cols=78 Identities=21% Similarity=0.279 Sum_probs=71.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeE--------EEEEEeCCCC--ceEEEEEEcCHHHHHHHHHHC-CCCCCC
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQ--------GGIQVRHNKG--YCFGFVEFQSSSSVDNAIQAS-PITIGG 365 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~--------~~i~~~~~~g--~g~aFV~F~~~e~a~~Al~~~-~~~i~g 365 (460)
...++|||+|||.++++++|+++|++||.|.. +.|..++.++ +|||||+|.+.++|++||+.+ +..|+|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 35699999999999999999999999999999 8898886653 899999999999999999987 999999
Q ss_pred eEEEEEecc
Q 012564 366 QEAFVEKKK 374 (460)
Q Consensus 366 r~i~V~~~~ 374 (460)
+.|+|++++
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999874
No 71
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=4.9e-15 Score=123.59 Aligned_cols=82 Identities=18% Similarity=0.340 Sum_probs=74.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-------CCCCCCe
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-------PITIGGQ 366 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-------~~~i~gr 366 (460)
..+.++|||+|||+++++++|+++|++||.|..|.|+.+..+ .++||||+|.+.++|++||+.+ +..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 345789999999999999999999999999999998887665 4899999999999999999976 6889999
Q ss_pred EEEEEecccCC
Q 012564 367 EAFVEKKKKTR 377 (460)
Q Consensus 367 ~i~V~~~~~~~ 377 (460)
.|+|++++++.
T Consensus 92 ~l~v~~a~~~~ 102 (111)
T 1x4h_A 92 QLKVDLAVTRD 102 (111)
T ss_dssp EEEEECCCCCC
T ss_pred EEEEEECCCCc
Confidence 99999998753
No 72
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3e-15 Score=125.45 Aligned_cols=83 Identities=22% Similarity=0.274 Sum_probs=74.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCee--------EEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCC
Q 012564 295 EEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVK--------QGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITI 363 (460)
Q Consensus 295 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~--------~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i 363 (460)
...+.++|||+|||.++++++|+++|++||.|. .+.|..++.+ .++||||+|.+.++|++||+.+ +..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345679999999999999999999999999998 5888777555 3899999999999999999987 9999
Q ss_pred CCeEEEEEecccCC
Q 012564 364 GGQEAFVEKKKKTR 377 (460)
Q Consensus 364 ~gr~i~V~~~~~~~ 377 (460)
+|+.|+|++++++.
T Consensus 91 ~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 91 QGSKLKVSLARKKP 104 (113)
T ss_dssp TTEECEEECSSCCC
T ss_pred CCCEEEEEECCCCC
Confidence 99999999998753
No 73
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=3.7e-15 Score=121.60 Aligned_cols=81 Identities=16% Similarity=0.153 Sum_probs=72.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCC--ceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEe
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKG--YCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEK 372 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g--~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~ 372 (460)
....++|||+|||+++++++|+++|++||.|..+.++.++.++ ++||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 3456899999999999999999999999999887787776663 899999999999999999998 8999999999999
Q ss_pred cccC
Q 012564 373 KKKT 376 (460)
Q Consensus 373 ~~~~ 376 (460)
++.+
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8753
No 74
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=5.7e-15 Score=118.62 Aligned_cols=75 Identities=24% Similarity=0.399 Sum_probs=69.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEeccc
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKKK 375 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~~ 375 (460)
.+.++|||+|||.++++++|+++|++||.|..+.|. ++||||+|.+.++|++||+.+ +..|+|+.|+|+++++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 457999999999999999999999999999998874 579999999999999999988 8999999999999987
Q ss_pred CC
Q 012564 376 TR 377 (460)
Q Consensus 376 ~~ 377 (460)
+.
T Consensus 80 ~~ 81 (90)
T 2dnq_A 80 KS 81 (90)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 75
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.60 E-value=3.7e-15 Score=119.15 Aligned_cols=80 Identities=26% Similarity=0.368 Sum_probs=72.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecc
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKK 374 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~ 374 (460)
+.++|||+|||.++++++|+++|++||.|..+.|..+..+ .++||||+|.+.++|++|| .+ +..|+|+.|+|++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4589999999999999999999999999999999887655 4899999999999999999 66 999999999999998
Q ss_pred cCCC
Q 012564 375 KTRV 378 (460)
Q Consensus 375 ~~~~ 378 (460)
++.+
T Consensus 84 ~~~p 87 (89)
T 3ucg_A 84 TNRP 87 (89)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 7543
No 76
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.60 E-value=3.2e-15 Score=122.40 Aligned_cols=78 Identities=24% Similarity=0.300 Sum_probs=68.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CC--CCCCeEEEEE
Q 012564 295 EEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PI--TIGGQEAFVE 371 (460)
Q Consensus 295 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~--~i~gr~i~V~ 371 (460)
...+.++|||+|||+++|+++|+++|++||.|.++.|+ +.+|||||+|++.++|.+|++.+ +. .|+|+.|+|+
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~----~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVM----PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE----TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEE----cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 34567899999999999999999999999999998774 34789999999999999999987 44 4899999999
Q ss_pred ecccC
Q 012564 372 KKKKT 376 (460)
Q Consensus 372 ~~~~~ 376 (460)
+++.+
T Consensus 93 ~S~~k 97 (100)
T 3r27_A 93 YSTSQ 97 (100)
T ss_dssp ECSCS
T ss_pred ecccc
Confidence 98754
No 77
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.60 E-value=1.6e-15 Score=123.58 Aligned_cols=80 Identities=19% Similarity=0.273 Sum_probs=69.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCC--eeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CC----CCCCe
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGP--VKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PI----TIGGQ 366 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~--v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~----~i~gr 366 (460)
+..-.+|||+|||+++|+++|+++|++||. |..|.|..++.+ .+|||||+|.+.++|++||+.+ +. .|+||
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 345689999999999999999999999995 567777777665 4899999999999999999988 54 58999
Q ss_pred EEEEEeccc
Q 012564 367 EAFVEKKKK 375 (460)
Q Consensus 367 ~i~V~~~~~ 375 (460)
.|.|++++.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999874
No 78
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.6e-14 Score=121.09 Aligned_cols=82 Identities=18% Similarity=0.195 Sum_probs=74.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEe
Q 012564 295 EEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEK 372 (460)
Q Consensus 295 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~ 372 (460)
.....++|||+|||.++++++|+++|++||.|..+.|..+... .++||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3455789999999999999999999999999999999887654 3899999999999999999987 9999999999999
Q ss_pred cccC
Q 012564 373 KKKT 376 (460)
Q Consensus 373 ~~~~ 376 (460)
++..
T Consensus 91 a~~~ 94 (114)
T 2do0_A 91 DERA 94 (114)
T ss_dssp CSCC
T ss_pred cccC
Confidence 8754
No 79
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=7.8e-15 Score=118.32 Aligned_cols=77 Identities=19% Similarity=0.323 Sum_probs=69.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 295 EEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 295 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
.....++|||+|||.++++++|+++|++||.|..+.|. ++||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 34567999999999999999999999999999998773 459999999999999999987 99999999999999
Q ss_pred ccCC
Q 012564 374 KKTR 377 (460)
Q Consensus 374 ~~~~ 377 (460)
+++.
T Consensus 80 ~~~~ 83 (92)
T 2dgt_A 80 TSRL 83 (92)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 8753
No 80
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.59 E-value=3.2e-15 Score=124.87 Aligned_cols=81 Identities=22% Similarity=0.267 Sum_probs=72.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEEec
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEKK 373 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~~~ 373 (460)
..+.++|||+|||.++++++|+++|++||.|..|.|..+..+ .+|||||+|.+.++|++||+.++..|+|+.|+|+++
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 101 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence 345789999999999999999999999999999998887654 489999999999999999999999999999999999
Q ss_pred ccC
Q 012564 374 KKT 376 (460)
Q Consensus 374 ~~~ 376 (460)
.++
T Consensus 102 ~~~ 104 (109)
T 2rs2_A 102 FPR 104 (109)
T ss_dssp CCC
T ss_pred cCC
Confidence 865
No 81
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.59 E-value=6.1e-15 Score=125.68 Aligned_cols=82 Identities=24% Similarity=0.364 Sum_probs=74.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEe
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEK 372 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~ 372 (460)
..+.++|||+|||.++++++|+++|++||.|..|.|..++.+ .+|||||+|.+.++|++|| .+ +..|+|+.|+|++
T Consensus 33 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 111 (124)
T 2jwn_A 33 EIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLP 111 (124)
T ss_dssp HHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEE
Confidence 345689999999999999999999999999999999888655 4899999999999999999 66 9999999999999
Q ss_pred cccCCC
Q 012564 373 KKKTRV 378 (460)
Q Consensus 373 ~~~~~~ 378 (460)
+++...
T Consensus 112 a~~~~~ 117 (124)
T 2jwn_A 112 KRTNMP 117 (124)
T ss_dssp SSCCCS
T ss_pred CCCCCC
Confidence 987544
No 82
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.59 E-value=3.5e-15 Score=121.38 Aligned_cols=78 Identities=15% Similarity=0.243 Sum_probs=72.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEeccc
Q 012564 299 GHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKKK 375 (460)
Q Consensus 299 ~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~~ 375 (460)
.++|||+|||.++++++|+++|++||.|..+.|..+..+ .+|||||+|.+.++|++||+.+ +..|+|+.|+|+++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 589999999999999999999999999999988877654 4899999999999999999988 9999999999999987
Q ss_pred C
Q 012564 376 T 376 (460)
Q Consensus 376 ~ 376 (460)
+
T Consensus 82 ~ 82 (96)
T 2x1f_A 82 S 82 (96)
T ss_dssp S
T ss_pred C
Confidence 5
No 83
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=4.6e-15 Score=122.31 Aligned_cols=77 Identities=16% Similarity=0.148 Sum_probs=68.3
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC---CCCCCCeEEEEEe
Q 012564 297 VEGHSIYIRNLPD-TMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS---PITIGGQEAFVEK 372 (460)
Q Consensus 297 ~~~~~lfV~nLp~-~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~---~~~i~gr~i~V~~ 372 (460)
.+.++|||+|||+ ++++++|+++|++||.|..+.|+. .++||||+|++.++|.+||+.+ +..|+|+.|+|++
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~----~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN----KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS----SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc----CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 4679999999999 999999999999999999987743 3589999999999999999987 3569999999999
Q ss_pred cccCC
Q 012564 373 KKKTR 377 (460)
Q Consensus 373 ~~~~~ 377 (460)
++...
T Consensus 89 a~~~~ 93 (102)
T 1x4d_A 89 SQKYK 93 (102)
T ss_dssp ECCCT
T ss_pred CCCCC
Confidence 98653
No 84
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.59 E-value=3.4e-15 Score=120.97 Aligned_cols=79 Identities=25% Similarity=0.310 Sum_probs=72.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
....++|||+|||.++++++|+++|++||.|..+.|..+... .++||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 445799999999999999999999999999999999887654 4899999999999999999987 99999999999987
Q ss_pred c
Q 012564 374 K 374 (460)
Q Consensus 374 ~ 374 (460)
+
T Consensus 93 ~ 93 (95)
T 2ywk_A 93 S 93 (95)
T ss_dssp C
T ss_pred C
Confidence 6
No 85
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4.2e-15 Score=125.80 Aligned_cols=78 Identities=19% Similarity=0.241 Sum_probs=70.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC---CCCCCCeEEEEE
Q 012564 295 EEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS---PITIGGQEAFVE 371 (460)
Q Consensus 295 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~---~~~i~gr~i~V~ 371 (460)
...+.++|||+|||+++++++|+++|++||.|+.+.|+. .+|||||+|++.++|++||+.+ +..|+|+.|+|+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~----~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK----GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEG----GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 345678999999999999999999999999999988754 3789999999999999999976 578999999999
Q ss_pred ecccC
Q 012564 372 KKKKT 376 (460)
Q Consensus 372 ~~~~~ 376 (460)
+++++
T Consensus 103 ~a~~k 107 (119)
T 2ad9_A 103 FSNHK 107 (119)
T ss_dssp ECSSS
T ss_pred EccCC
Confidence 99875
No 86
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.58 E-value=3.9e-15 Score=128.26 Aligned_cols=82 Identities=20% Similarity=0.270 Sum_probs=74.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEe
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEK 372 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~ 372 (460)
..+.++|||+|||.++++++|+++|++||.|..|.|..+..+ .+|||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 445789999999999999999999999999999998887655 4899999999999999999987 9999999999999
Q ss_pred cccCC
Q 012564 373 KKKTR 377 (460)
Q Consensus 373 ~~~~~ 377 (460)
+++++
T Consensus 123 a~~~~ 127 (129)
T 2kxn_B 123 SITKR 127 (129)
T ss_dssp CSSSS
T ss_pred ecCCC
Confidence 98753
No 87
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3e-15 Score=123.75 Aligned_cols=80 Identities=19% Similarity=0.225 Sum_probs=72.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEEecc
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEKKK 374 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~~~~ 374 (460)
+.+.++|||+|||+++|+++|+++|++||.|..|.|+.+... .+|||||+|.+.++|++||...++.|+|+.|.|.+++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 87 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEch
Confidence 445689999999999999999999999999999998877654 4899999999999999999933999999999999876
Q ss_pred c
Q 012564 375 K 375 (460)
Q Consensus 375 ~ 375 (460)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 5
No 88
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.58 E-value=1.4e-15 Score=124.97 Aligned_cols=79 Identities=19% Similarity=0.191 Sum_probs=73.6
Q ss_pred CCcEEEEcCCCC------CCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCC-eE
Q 012564 298 EGHSIYIRNLPD------TMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGG-QE 367 (460)
Q Consensus 298 ~~~~lfV~nLp~------~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~g-r~ 367 (460)
..++|||+|||. ++++++|+++|++||.|..+.|+.++.+ .+|||||+|.+.++|++||+.+ +..|+| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 9999999999999999999999999876 4899999999999999999988 999999 99
Q ss_pred EEEEecccC
Q 012564 368 AFVEKKKKT 376 (460)
Q Consensus 368 i~V~~~~~~ 376 (460)
|+|.+++++
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999999864
No 89
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.5e-14 Score=118.27 Aligned_cols=76 Identities=22% Similarity=0.266 Sum_probs=68.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcC--CCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEe
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKF--GPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEK 372 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~--G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~ 372 (460)
....++|||+|||+++++++|+++|++| |.|..+.+ .++||||+|.+.++|++||..+ +..|+|+.|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK------IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE------CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE------eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3457999999999999999999999999 89988765 2579999999999999999987 9999999999999
Q ss_pred cccCC
Q 012564 373 KKKTR 377 (460)
Q Consensus 373 ~~~~~ 377 (460)
++++.
T Consensus 86 a~~~~ 90 (99)
T 2cpd_A 86 AKPVD 90 (99)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98754
No 90
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.3e-14 Score=118.25 Aligned_cols=78 Identities=19% Similarity=0.361 Sum_probs=69.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCC--CeEEEEEe
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIG--GQEAFVEK 372 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~--gr~i~V~~ 372 (460)
....++|||+|||.++++++|+++|++||.|..+.|. ++++||||+|.+.++|++||+.+ +..|+ |+.|+|++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~----~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHV----KGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEEC----SSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe----CCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 3456899999999999999999999999999998773 34789999999999999999987 89999 99999999
Q ss_pred cccCC
Q 012564 373 KKKTR 377 (460)
Q Consensus 373 ~~~~~ 377 (460)
++++.
T Consensus 90 a~~~~ 94 (97)
T 1why_A 90 AKSGP 94 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98753
No 91
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=6.4e-15 Score=121.57 Aligned_cols=78 Identities=17% Similarity=0.172 Sum_probs=68.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEEeccc
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEKKKK 375 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~~~~~ 375 (460)
...++|||+|||+++++++|+++|++||.+ .|.|+.++.. .+|||||+|.+.++|++||+..+..|++|.|+|..+.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~~ 91 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNST 91 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCC
Confidence 456899999999999999999999999954 8888888743 48999999999999999996449999999999998774
No 92
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.57 E-value=5.1e-15 Score=118.02 Aligned_cols=79 Identities=19% Similarity=0.282 Sum_probs=72.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC---CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK---GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~---g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
..++|||+|||.++++++|+++|++||.|..+.|..+..+ .+|||||+|.+.++|++|++.+ +..|+|+.|+|+.+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 4689999999999999999999999999999998888754 4789999999999999999987 99999999999999
Q ss_pred ccC
Q 012564 374 KKT 376 (460)
Q Consensus 374 ~~~ 376 (460)
++.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 865
No 93
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.57 E-value=5.2e-15 Score=123.42 Aligned_cols=82 Identities=17% Similarity=0.272 Sum_probs=74.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEe
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEK 372 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~ 372 (460)
..+.++|||+|||.++++++|+++|++||.|..+.|..+..+ .+|||||+|.+.++|++||..+ +..|+|+.|+|++
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 456799999999999999999999999999999988777655 3899999999999999999987 9999999999999
Q ss_pred cccCC
Q 012564 373 KKKTR 377 (460)
Q Consensus 373 ~~~~~ 377 (460)
++++.
T Consensus 103 a~~~~ 107 (110)
T 1oo0_B 103 CFVKG 107 (110)
T ss_dssp SEESS
T ss_pred cccCC
Confidence 98753
No 94
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.57 E-value=2.6e-15 Score=129.50 Aligned_cols=81 Identities=20% Similarity=0.282 Sum_probs=73.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeE--EEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CC----CCCCe
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQ--GGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PI----TIGGQ 366 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~--~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~----~i~gr 366 (460)
....++|||+|||+++++++|+++|++||.|.. |.|+.++.+ .+|||||+|.+. +|.+||..+ +. .|+|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 456789999999999999999999999999976 888888755 489999999999 999999998 87 99999
Q ss_pred EEEEEecccCC
Q 012564 367 EAFVEKKKKTR 377 (460)
Q Consensus 367 ~i~V~~~~~~~ 377 (460)
.|+|+++++..
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999998753
No 95
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.3e-14 Score=118.68 Aligned_cols=78 Identities=19% Similarity=0.322 Sum_probs=70.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecc
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKK 374 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~ 374 (460)
..+.++|||+|||.++++++|+++|++||.|..+.|. +.++||||+|.+.++|++||+.+ +..|+|+.|+|++++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH----KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEE----TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEe----cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 4567899999999999999999999999999998774 33789999999999999999988 999999999999998
Q ss_pred cCC
Q 012564 375 KTR 377 (460)
Q Consensus 375 ~~~ 377 (460)
++.
T Consensus 88 ~~~ 90 (99)
T 2cpj_A 88 HSA 90 (99)
T ss_dssp CCS
T ss_pred CCC
Confidence 753
No 96
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=9.8e-15 Score=119.78 Aligned_cols=80 Identities=21% Similarity=0.279 Sum_probs=69.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEe
Q 012564 295 EEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEK 372 (460)
Q Consensus 295 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~ 372 (460)
...+.++|||+|||.++++++|+++|++||.|. |+.+... .++||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~---~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIK---VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEE---CCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEE---EEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 445679999999999999999999999999883 4444222 4899999999999999999988 9999999999999
Q ss_pred cccCC
Q 012564 373 KKKTR 377 (460)
Q Consensus 373 ~~~~~ 377 (460)
++++.
T Consensus 88 a~~~~ 92 (101)
T 2fc9_A 88 QGPRG 92 (101)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 98753
No 97
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.1e-15 Score=122.61 Aligned_cols=80 Identities=21% Similarity=0.338 Sum_probs=74.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCC--ceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKG--YCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g--~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
...++|||+|||.++++++|+++|++||.|..+.|..+..++ +|||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 346899999999999999999999999999999998887654 899999999999999999988 99999999999999
Q ss_pred ccC
Q 012564 374 KKT 376 (460)
Q Consensus 374 ~~~ 376 (460)
++.
T Consensus 86 ~~~ 88 (104)
T 1p1t_A 86 ASE 88 (104)
T ss_dssp TCT
T ss_pred CCc
Confidence 875
No 98
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.57 E-value=3.1e-15 Score=118.68 Aligned_cols=73 Identities=12% Similarity=0.191 Sum_probs=68.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecc
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKK 374 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~ 374 (460)
....|||+||++.+|+++|+++|.+||+|+.+.|.+ .+|||||+|.+.++|++|++.| +.+|+|+.|+|+.+.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 368899999999999999999999999999988843 5899999999999999999999 999999999999885
No 99
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=6.2e-15 Score=123.41 Aligned_cols=83 Identities=16% Similarity=0.210 Sum_probs=74.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH---HHhhcCCCeeEEEEEEeCCC-----CceEEEEEEcCHHHHHHHHHHC-CCCCCC
Q 012564 295 EEVEGHSIYIRNLPDTMTVASLE---VEFKKFGPVKQGGIQVRHNK-----GYCFGFVEFQSSSSVDNAIQAS-PITIGG 365 (460)
Q Consensus 295 ~~~~~~~lfV~nLp~~vte~~L~---~~F~~~G~v~~~~i~~~~~~-----g~g~aFV~F~~~e~a~~Al~~~-~~~i~g 365 (460)
...+.++|||+|||+++++++|+ ++|++||.|..+.|..+... .+|||||+|.+.++|++||+.| +..|+|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 44567899999999999999999 99999999999988776643 3699999999999999999997 999999
Q ss_pred eEEEEEecccCC
Q 012564 366 QEAFVEKKKKTR 377 (460)
Q Consensus 366 r~i~V~~~~~~~ 377 (460)
+.|+|++++++.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998764
No 100
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.2e-14 Score=119.40 Aligned_cols=80 Identities=20% Similarity=0.312 Sum_probs=69.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEE
Q 012564 295 EEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVE 371 (460)
Q Consensus 295 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~ 371 (460)
.....++|||+|||.++++++|+++|+.|+. +.++.+..+ .++||||+|.+.++|++||+.+ +..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~---~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSVR---ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCSE---EEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCeE---EEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3456799999999999999999999998854 446666555 3899999999999999999987 999999999999
Q ss_pred ecccCC
Q 012564 372 KKKKTR 377 (460)
Q Consensus 372 ~~~~~~ 377 (460)
+++++.
T Consensus 88 ~a~~~~ 93 (102)
T 2fc8_A 88 WAKPKG 93 (102)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 998753
No 101
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=5.7e-15 Score=121.19 Aligned_cols=75 Identities=25% Similarity=0.371 Sum_probs=69.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecccCC
Q 012564 300 HSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKKKTR 377 (460)
Q Consensus 300 ~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~~~~ 377 (460)
++|||+|||.++++++|+++|++||.|..+.|..+ .++||||+|.+.++|++||+.+ +..|+|+.|+|+++++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 58999999999999999999999999999887655 5789999999999999999988 999999999999998754
No 102
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5.8e-15 Score=124.19 Aligned_cols=81 Identities=17% Similarity=0.190 Sum_probs=73.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCe-eEEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEEec
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPV-KQGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEKK 373 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v-~~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~~~ 373 (460)
..+.++|||+|||+++++++|+++|++||.| ..|.|+.+... .+|||||+|.+.++|++||+..+..|+|+.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVV 91 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEC
Confidence 3457899999999999999999999999999 88888887733 589999999999999999988889999999999998
Q ss_pred ccC
Q 012564 374 KKT 376 (460)
Q Consensus 374 ~~~ 376 (460)
.+.
T Consensus 92 ~~~ 94 (114)
T 2cpy_A 92 TLE 94 (114)
T ss_dssp CHH
T ss_pred CHH
Confidence 765
No 103
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.8e-15 Score=125.89 Aligned_cols=80 Identities=23% Similarity=0.268 Sum_probs=72.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEe
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEK 372 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~ 372 (460)
+.+.++|||+|||.++++++|+++|++||.|..|.|+.+..+ .+|||||+|.+.++|++|| .+ +..|+|+.|+|++
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 345689999999999999999999999999999998877765 4899999999999999999 65 9999999999999
Q ss_pred cccC
Q 012564 373 KKKT 376 (460)
Q Consensus 373 ~~~~ 376 (460)
++++
T Consensus 101 a~~~ 104 (114)
T 2cq4_A 101 SQAE 104 (114)
T ss_dssp HHHH
T ss_pred cCCC
Confidence 9865
No 104
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.8e-14 Score=116.65 Aligned_cols=75 Identities=23% Similarity=0.440 Sum_probs=67.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecccC
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKKKT 376 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~~~ 376 (460)
..++|||+|||+++++++|+++|++||.|..| ++++.+++ ||||+|.+.++|++||+ + +..|+|+.|+|+.+.++
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 45899999999999999999999999999985 56666666 99999999999999999 7 99999999999987654
No 105
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=2.1e-14 Score=117.04 Aligned_cols=79 Identities=18% Similarity=0.322 Sum_probs=70.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecc
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKK 374 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~ 374 (460)
....++|||+|||+++++++|+++|++||.|. +.|+.+ ..++||||+|.+.++|++||+.+ +..|+|+.|+|++++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ--GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC--CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 34568999999999999999999999999997 666654 35789999999999999999988 999999999999998
Q ss_pred cCC
Q 012564 375 KTR 377 (460)
Q Consensus 375 ~~~ 377 (460)
+++
T Consensus 93 ~~~ 95 (97)
T 2e5j_A 93 QQR 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 106
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=2e-14 Score=115.53 Aligned_cols=79 Identities=18% Similarity=0.190 Sum_probs=71.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
....++|||+|||+++++++|+++|++| .|..+.|+.+... .+|||||+|.+.++|++||. + +..|+|+.|+|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 3467999999999999999999999999 9999999888333 48999999999999999999 7 99999999999998
Q ss_pred ccC
Q 012564 374 KKT 376 (460)
Q Consensus 374 ~~~ 376 (460)
+++
T Consensus 85 ~~~ 87 (91)
T 2dgw_A 85 KSG 87 (91)
T ss_dssp SSC
T ss_pred CcC
Confidence 865
No 107
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.1e-14 Score=122.00 Aligned_cols=78 Identities=15% Similarity=0.233 Sum_probs=69.1
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC---CCCCCCeEEEEE
Q 012564 296 EVEGHSIYIRNLPDT-MTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS---PITIGGQEAFVE 371 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~-vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~---~~~i~gr~i~V~ 371 (460)
....++|||+|||++ +++++|+++|++||.|.++.|+ +.++||||+|++.++|.+||+.+ +..|+|+.|+|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~----~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 97 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM----RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVD 97 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE----TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe----cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 445789999999998 9999999999999999998773 34789999999999999999976 567999999999
Q ss_pred ecccCC
Q 012564 372 KKKKTR 377 (460)
Q Consensus 372 ~~~~~~ 377 (460)
+++.+.
T Consensus 98 ~a~~~~ 103 (112)
T 1x4f_A 98 LSEKYK 103 (112)
T ss_dssp EECSCS
T ss_pred ECcccc
Confidence 998653
No 108
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.56 E-value=4.4e-15 Score=125.20 Aligned_cols=74 Identities=16% Similarity=0.208 Sum_probs=64.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeE-----EEEE
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQE-----AFVE 371 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~-----i~V~ 371 (460)
..++|||+|||+++++++|+++|++||.|..|.|+.+ +||||+|.+.++|++||+.| +.+|+|+. |+|+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 4689999999999999999999999999999877433 89999999999999999988 99999998 7777
Q ss_pred ecccC
Q 012564 372 KKKKT 376 (460)
Q Consensus 372 ~~~~~ 376 (460)
..+++
T Consensus 90 ~~~~~ 94 (115)
T 3beg_B 90 VDGPR 94 (115)
T ss_dssp ECC--
T ss_pred cCCCC
Confidence 77654
No 109
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.6e-14 Score=115.95 Aligned_cols=75 Identities=20% Similarity=0.274 Sum_probs=68.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecc
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKK 374 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~ 374 (460)
....++|||+|||.++++++|+++|++||.|..+.|. ++||||+|.+.++|++||+.+ +..|+|+.|+|++++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 4567899999999999999999999999999998773 449999999999999999987 999999999999998
Q ss_pred cC
Q 012564 375 KT 376 (460)
Q Consensus 375 ~~ 376 (460)
+.
T Consensus 80 ~~ 81 (90)
T 2dnp_A 80 KG 81 (90)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 110
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.55 E-value=6.1e-15 Score=119.47 Aligned_cols=78 Identities=17% Similarity=0.177 Sum_probs=70.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCC--ceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKG--YCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g--~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
...++|||+|||+++++++|+++|++||.|..+.++.++.++ ++||||+|.+.++|++||+.+ +..|+|+.|+|+.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 345899999999999999999999999999888888876663 899999999999999999987 99999999999987
Q ss_pred c
Q 012564 374 K 374 (460)
Q Consensus 374 ~ 374 (460)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 5
No 111
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.55 E-value=1.8e-14 Score=120.18 Aligned_cols=74 Identities=18% Similarity=0.323 Sum_probs=68.1
Q ss_pred CCCcEEEEcCCCCC-CCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecc
Q 012564 297 VEGHSIYIRNLPDT-MTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKK 374 (460)
Q Consensus 297 ~~~~~lfV~nLp~~-vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~ 374 (460)
...++|||+|||++ +++++|+++|++||.|..|.| .++||||+|.+.++|++||+.+ +..|+|+.|+|++++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 34689999999999 999999999999999999877 4689999999999999999887 999999999999998
Q ss_pred cC
Q 012564 375 KT 376 (460)
Q Consensus 375 ~~ 376 (460)
+.
T Consensus 99 ~~ 100 (110)
T 1wf1_A 99 EP 100 (110)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 112
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.55 E-value=8.4e-15 Score=119.21 Aligned_cols=76 Identities=25% Similarity=0.388 Sum_probs=68.5
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 296 EVEGHSIYIRNLPD-TMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 296 ~~~~~~lfV~nLp~-~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
..+.++|||+|||+ ++++++|+++|++||.|..+.|. ++||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 45679999999998 99999999999999999998772 689999999999999999987 99999999999999
Q ss_pred ccCC
Q 012564 374 KKTR 377 (460)
Q Consensus 374 ~~~~ 377 (460)
+++.
T Consensus 81 ~~~~ 84 (96)
T 2kvi_A 81 SSNA 84 (96)
T ss_dssp ECCC
T ss_pred CcCC
Confidence 8653
No 113
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.55 E-value=1.9e-14 Score=119.30 Aligned_cols=78 Identities=15% Similarity=0.269 Sum_probs=71.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecc
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKK 374 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~ 374 (460)
...++|||+|||+++++++|+++|++||.|..+.|..+... .++||||+|.+.++|++||+.| +..|+|+.|+|+++.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 45799999999999999999999999999999999888733 4899999999999999999987 999999999999875
No 114
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.54 E-value=1.2e-14 Score=121.13 Aligned_cols=76 Identities=28% Similarity=0.410 Sum_probs=70.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecc
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKK 374 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~ 374 (460)
+...++|||+|||.++++++|+++|++||.|..+.|. +|||||+|.+.++|++||+.+ +..|+|+.|+|++++
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 101 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSK 101 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 4567999999999999999999999999999998875 689999999999999999987 999999999999998
Q ss_pred cCC
Q 012564 375 KTR 377 (460)
Q Consensus 375 ~~~ 377 (460)
+..
T Consensus 102 ~~~ 104 (108)
T 2jvo_A 102 LPA 104 (108)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 115
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3e-14 Score=117.73 Aligned_cols=81 Identities=17% Similarity=0.181 Sum_probs=70.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeE-EEEEEeCCC-CceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEEec
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQ-GGIQVRHNK-GYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEKK 373 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~-~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~~~ 373 (460)
....++|||+|||+++++++|+++|++||.|.. +.|..+... .+|||||+|.+.++|++||...+..|+||.|+|..+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 91 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEEC
Confidence 345789999999999999999999999999987 777666332 489999999999999999998899999999999887
Q ss_pred ccC
Q 012564 374 KKT 376 (460)
Q Consensus 374 ~~~ 376 (460)
.+.
T Consensus 92 ~~~ 94 (104)
T 1wg5_A 92 SRA 94 (104)
T ss_dssp CTT
T ss_pred CHH
Confidence 653
No 116
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.54 E-value=1.9e-14 Score=117.47 Aligned_cols=74 Identities=26% Similarity=0.389 Sum_probs=68.3
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecc
Q 012564 297 VEGHSIYIRNLPD-TMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKK 374 (460)
Q Consensus 297 ~~~~~lfV~nLp~-~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~ 374 (460)
.+.++|||+|||+ ++++++|+++|++||.|..+.| .+|||||+|.+.++|++||+.+ +..|+|+.|+|++++
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 3579999999998 9999999999999999999877 3789999999999999999988 999999999999988
Q ss_pred cC
Q 012564 375 KT 376 (460)
Q Consensus 375 ~~ 376 (460)
++
T Consensus 94 ~~ 95 (97)
T 2xnq_A 94 SN 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 117
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.6e-14 Score=120.29 Aligned_cols=78 Identities=19% Similarity=0.273 Sum_probs=70.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecc
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKK 374 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~ 374 (460)
....++|||+|||.++++++|+++|++||.|..|.|..+ ++||||+|.+.++|++||..+ +..|+|+.|+|++++
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 456789999999999999999999999999999877443 789999999999999999887 999999999999998
Q ss_pred cCC
Q 012564 375 KTR 377 (460)
Q Consensus 375 ~~~ 377 (460)
++.
T Consensus 98 ~~~ 100 (109)
T 1x4g_A 98 ESP 100 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 118
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.54 E-value=9.7e-15 Score=119.81 Aligned_cols=75 Identities=20% Similarity=0.207 Sum_probs=68.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecccC
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKKKT 376 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~~~ 376 (460)
..++|||+|||.++++++|+++|++||.|..+.|. +.++||||+|.+.++|++||..+ +..|+|+.|+|++++++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 46899999999999999999999999999998774 45789999999999999999987 99999999999998863
No 119
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.54 E-value=2e-14 Score=128.98 Aligned_cols=81 Identities=19% Similarity=0.300 Sum_probs=73.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCC--ceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKG--YCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g--~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
.+.++|||+|||+++++++|+++|++||.|..|.|..+..++ +|||||+|.+.++|++||..| +..|+|+.|.|.++
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 457899999999999999999999999999999998886663 899999999999999999988 99999999999999
Q ss_pred ccCC
Q 012564 374 KKTR 377 (460)
Q Consensus 374 ~~~~ 377 (460)
+++.
T Consensus 150 ~~~~ 153 (165)
T 1rk8_A 150 FVKG 153 (165)
T ss_dssp EECC
T ss_pred cCCC
Confidence 8753
No 120
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.9e-14 Score=114.02 Aligned_cols=75 Identities=20% Similarity=0.359 Sum_probs=67.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC--CCCCCCeEEEEEec
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS--PITIGGQEAFVEKK 373 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~--~~~i~gr~i~V~~~ 373 (460)
+...++|||+|||.++++++|+++|++||.|..+.|.. .++||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~----~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ----RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG----GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC----CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 45678999999999999999999999999999987743 3789999999999999999975 78899999999987
Q ss_pred c
Q 012564 374 K 374 (460)
Q Consensus 374 ~ 374 (460)
+
T Consensus 85 k 85 (85)
T 2ytc_A 85 R 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 121
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.54 E-value=8.6e-15 Score=122.62 Aligned_cols=77 Identities=19% Similarity=0.223 Sum_probs=68.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCC-CeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEeccc
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFG-PVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKKK 375 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G-~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~~ 375 (460)
..++|||+|||+++++++|+++|++|| .|..+.|..+ ..+|||||+|.+.++|++||+.+ +..|+|+.|+|++++.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~--~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR--DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC--SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC--CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 468999999999999999999999999 8998776322 25799999999999999999998 9999999999999875
Q ss_pred C
Q 012564 376 T 376 (460)
Q Consensus 376 ~ 376 (460)
.
T Consensus 105 ~ 105 (111)
T 2jvr_A 105 P 105 (111)
T ss_dssp -
T ss_pred C
Confidence 4
No 122
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.1e-14 Score=117.57 Aligned_cols=75 Identities=17% Similarity=0.205 Sum_probs=66.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCC-eeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-C-CCCCCeEEEEEec
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGP-VKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-P-ITIGGQEAFVEKK 373 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~-v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~-~~i~gr~i~V~~~ 373 (460)
...++|||+|||.++++++|+++|++||. |..+.+. .++||||+|.+.++|++||+.+ + ..|+|+.|+|+++
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 35689999999999999999999999999 6655441 3689999999999999999988 8 8999999999999
Q ss_pred ccC
Q 012564 374 KKT 376 (460)
Q Consensus 374 ~~~ 376 (460)
+++
T Consensus 81 ~~~ 83 (93)
T 2cqh_A 81 VSK 83 (93)
T ss_dssp CCC
T ss_pred cCc
Confidence 875
No 123
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.53 E-value=8.4e-15 Score=127.13 Aligned_cols=82 Identities=23% Similarity=0.298 Sum_probs=74.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEe
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEK 372 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~ 372 (460)
..+.++|||+|||.++++++|+++|++||.|..+.|..+..+ .+|||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345789999999999999999999999999999888777554 4899999999999999999988 9999999999999
Q ss_pred cccCC
Q 012564 373 KKKTR 377 (460)
Q Consensus 373 ~~~~~ 377 (460)
+++..
T Consensus 124 a~~~~ 128 (135)
T 2lea_A 124 ARYGR 128 (135)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98753
No 124
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.53 E-value=3.5e-14 Score=126.13 Aligned_cols=81 Identities=23% Similarity=0.310 Sum_probs=74.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
...++|||+|||+++++++|+++|++||.|..+.|..+..+ .+|||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999988887654 5899999999999999999998 99999999999999
Q ss_pred ccCC
Q 012564 374 KKTR 377 (460)
Q Consensus 374 ~~~~ 377 (460)
++.+
T Consensus 148 ~~~~ 151 (158)
T 2kn4_A 148 RYGR 151 (158)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 8753
No 125
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=8.1e-15 Score=113.87 Aligned_cols=74 Identities=23% Similarity=0.288 Sum_probs=68.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEEec
Q 012564 300 HSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEKK 373 (460)
Q Consensus 300 ~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~~~ 373 (460)
++|||+|||.++++++|+++|++||.|..+.|..++.+ .+|||||+|.+.++|++||+.+...|+|+.|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 47999999999999999999999999999988877654 489999999999999999999998999999999875
No 126
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.29 E-value=6.6e-16 Score=130.29 Aligned_cols=82 Identities=18% Similarity=0.232 Sum_probs=73.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeE--------EEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCC
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQ--------GGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIG 364 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~--------~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~ 364 (460)
..+.++|||+|||.++++++|+++|++||.|.. +.|..++.+ .++||||+|.+.++|++||+.+ +..|+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 446789999999999999999999999999998 778777554 4899999999999999999988 99999
Q ss_pred CeEEEEEecccCC
Q 012564 365 GQEAFVEKKKKTR 377 (460)
Q Consensus 365 gr~i~V~~~~~~~ 377 (460)
|+.|+|++++++.
T Consensus 84 g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 84 GNPIKVSFATRRA 96 (116)
Confidence 9999999998653
No 127
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.2e-14 Score=122.45 Aligned_cols=80 Identities=23% Similarity=0.261 Sum_probs=70.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCC--ceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEe
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKG--YCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEK 372 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g--~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~ 372 (460)
..+.++|||+|||+++++++|+++|++||.|..+.++.+..++ +|||||+|.+.++|++||+ + +..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3456999999999999999999999999999875566665553 8999999999999999999 6 9999999999998
Q ss_pred cccC
Q 012564 373 KKKT 376 (460)
Q Consensus 373 ~~~~ 376 (460)
+.+.
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8754
No 128
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.53 E-value=4e-14 Score=122.88 Aligned_cols=79 Identities=20% Similarity=0.302 Sum_probs=71.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEE
Q 012564 295 EEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVE 371 (460)
Q Consensus 295 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~ 371 (460)
.....++|||+|||.++++++|+++|++||.|..+.|..++.+ .++||||+|.+.++|++||+.+ +..|+|+.|+|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456799999999999999999999999999999888777554 4899999999999999999988 899999999998
Q ss_pred ec
Q 012564 372 KK 373 (460)
Q Consensus 372 ~~ 373 (460)
++
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 64
No 129
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.53 E-value=3.4e-15 Score=130.14 Aligned_cols=80 Identities=16% Similarity=0.123 Sum_probs=68.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEEecc
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEKKK 374 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~~~~ 374 (460)
....++|||+|||+++|+++|+++|++|| |..|.|+++... .+|||||+|.+.++|++||+..+..|++|.|+|..+.
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 121 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECC
Confidence 34568999999999999999999999999 668888777653 4899999999999999999433999999999999887
Q ss_pred cC
Q 012564 375 KT 376 (460)
Q Consensus 375 ~~ 376 (460)
+.
T Consensus 122 ~~ 123 (139)
T 2hgn_A 122 TT 123 (139)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 130
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.53 E-value=1.7e-14 Score=117.20 Aligned_cols=80 Identities=14% Similarity=0.225 Sum_probs=69.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 295 EEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 295 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
...+.++|||+|||.++++++|+++|++||.|..+ ......+|||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE---EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe---CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 34467999999999999999999999999998764 222225899999999999999999988 89999999999999
Q ss_pred ccCC
Q 012564 374 KKTR 377 (460)
Q Consensus 374 ~~~~ 377 (460)
+++.
T Consensus 89 ~~~~ 92 (96)
T 1fjc_A 89 GEKG 92 (96)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 8753
No 131
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.53 E-value=9.9e-15 Score=112.92 Aligned_cols=73 Identities=23% Similarity=0.360 Sum_probs=66.0
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEEec
Q 012564 301 SIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEKK 373 (460)
Q Consensus 301 ~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~~~ 373 (460)
+|||+|||.++++++|+++|++||.|..+.|..+..+ .+|||||+|.+.++|++||+..+..|+|+.|+|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999888777654 489999999999999999983399999999999864
No 132
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.53 E-value=6.7e-15 Score=120.77 Aligned_cols=78 Identities=19% Similarity=0.299 Sum_probs=69.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeC-CC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEe
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRH-NK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEK 372 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~-~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~ 372 (460)
...++|||+|||.++++++|+++|++|| |..+.|..+. .+ .+|||||+|.+.++|++|| .+ +..|+|+.|+|++
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 3569999999999999999999999999 9999888776 23 4899999999999999999 67 9999999999999
Q ss_pred cccC
Q 012564 373 KKKT 376 (460)
Q Consensus 373 ~~~~ 376 (460)
++++
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 8864
No 133
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=5.7e-15 Score=117.16 Aligned_cols=77 Identities=22% Similarity=0.287 Sum_probs=69.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecc
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKK 374 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~ 374 (460)
+.++|||+|||.++++++|+++|++||.|..+.|..+..+ .+|||||+|.+.++|++||+.+ +..|+|+.|+|.+.+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 5689999999999999999999999999999998887655 4899999999999999999988 999999988776543
No 134
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=5.6e-14 Score=117.98 Aligned_cols=81 Identities=21% Similarity=0.267 Sum_probs=68.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEe--CCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVR--HNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~--~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
...++|||+|||.++++++|+++|++||.|..+.+.++ ....++||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 35689999999999999999999999999844322222 2335899999999999999999998 99999999999999
Q ss_pred ccCC
Q 012564 374 KKTR 377 (460)
Q Consensus 374 ~~~~ 377 (460)
+++.
T Consensus 103 ~~~~ 106 (115)
T 2cpx_A 103 KNKK 106 (115)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 8753
No 135
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=1.4e-14 Score=121.31 Aligned_cols=77 Identities=18% Similarity=0.209 Sum_probs=69.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecc
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKK 374 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~ 374 (460)
+...++|||+|||+++++++|+++|++||.|..|.|. ..++||||+|.+.++|++||+.| +..|+|+.|+|++++
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP----EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC----SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe----CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 3346899999999999999999999999999987763 35789999999999999999988 999999999999987
Q ss_pred cC
Q 012564 375 KT 376 (460)
Q Consensus 375 ~~ 376 (460)
..
T Consensus 83 ~~ 84 (111)
T 1whx_A 83 IG 84 (111)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 136
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1e-13 Score=116.27 Aligned_cols=82 Identities=23% Similarity=0.290 Sum_probs=72.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHC-CCCC--------C
Q 012564 295 EEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQAS-PITI--------G 364 (460)
Q Consensus 295 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~-~~~i--------~ 364 (460)
.+.+.++|||+|||.++++++|+++|++||.|..+.|..+... .++||||+|.+.++|++||+.+ +..| .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3456799999999999999999999999999999999888733 4899999999999999999988 8888 5
Q ss_pred CeEEEEEecccC
Q 012564 365 GQEAFVEKKKKT 376 (460)
Q Consensus 365 gr~i~V~~~~~~ 376 (460)
++.|.|.+++|+
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 778999988853
No 137
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.52 E-value=2.2e-14 Score=121.53 Aligned_cols=81 Identities=20% Similarity=0.182 Sum_probs=72.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCC---eeEEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEE
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGP---VKQGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVE 371 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~---v~~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~ 371 (460)
..+.++|||+|||+++|+++|+++|++||. |..|.|+.+... .+|||||+|.+.++|++||+..+..|+|+.|+|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 93 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 346799999999999999999999999999 889988887764 4899999999999999999944999999999999
Q ss_pred ecccC
Q 012564 372 KKKKT 376 (460)
Q Consensus 372 ~~~~~ 376 (460)
.+.+.
T Consensus 94 ~a~~~ 98 (118)
T 2db1_A 94 KSHRT 98 (118)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 88654
No 138
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.52 E-value=2.7e-14 Score=118.25 Aligned_cols=80 Identities=18% Similarity=0.189 Sum_probs=69.7
Q ss_pred CCCcEEEEcCCCCCC------CHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCe-EE
Q 012564 297 VEGHSIYIRNLPDTM------TVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQ-EA 368 (460)
Q Consensus 297 ~~~~~lfV~nLp~~v------te~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr-~i 368 (460)
...++|||+|||+.+ ++++|+++|++||.|..+.|.......+|||||+|.+.++|++||..+ +..|+|+ .|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 346899999999999 789999999999999998876222225899999999999999999998 9999998 99
Q ss_pred EEEecccC
Q 012564 369 FVEKKKKT 376 (460)
Q Consensus 369 ~V~~~~~~ 376 (460)
+|+++...
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99988753
No 139
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=1.9e-14 Score=120.11 Aligned_cols=78 Identities=13% Similarity=0.121 Sum_probs=69.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEEecccC
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEKKKKT 376 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~~~~~~ 376 (460)
+.++|||+|||+++++++|+++|++| .|..|.|+.++.. .+|||||+|.+.++|++||...+..|+||.|.|..+.+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCcc
Confidence 45899999999999999999999999 8999988877654 489999999999999999954499999999999888654
No 140
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.2e-13 Score=112.53 Aligned_cols=75 Identities=20% Similarity=0.305 Sum_probs=67.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEeccc
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKKK 375 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~~ 375 (460)
.+.++|||+|| ++++++|+++|++||.|..|.| ...++||||+|.+.++|++||+.+ +..|+|+.|+|+++++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i----~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM----DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE----ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe----cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 45689999996 8999999999999999999877 245789999999999999999998 9999999999999987
Q ss_pred CC
Q 012564 376 TR 377 (460)
Q Consensus 376 ~~ 377 (460)
+.
T Consensus 87 ~~ 88 (97)
T 1x5p_A 87 QP 88 (97)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 141
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.51 E-value=4.6e-14 Score=120.32 Aligned_cols=81 Identities=15% Similarity=0.244 Sum_probs=73.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
....++|||+|||.++++++|+++|++||.|..+.|..+... .+|||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 345789999999999999999999999999999998887733 4899999999999999999987 99999999999998
Q ss_pred ccC
Q 012564 374 KKT 376 (460)
Q Consensus 374 ~~~ 376 (460)
.+.
T Consensus 112 ~~~ 114 (124)
T 2kt5_A 112 ASQ 114 (124)
T ss_dssp CCT
T ss_pred CCC
Confidence 764
No 142
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.51 E-value=1.4e-14 Score=113.91 Aligned_cols=72 Identities=19% Similarity=0.265 Sum_probs=62.9
Q ss_pred CcEEEEcCCCCCC------CHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCe-EEEE
Q 012564 299 GHSIYIRNLPDTM------TVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQ-EAFV 370 (460)
Q Consensus 299 ~~~lfV~nLp~~v------te~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr-~i~V 370 (460)
+++|||+|||..+ ++++|+++|++||.|..+.|.....+.+|||||+|.+.++|++||+.+ +..|+|+ .|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 3789999999999 779999999999999998776222225899999999999999999998 9999999 8876
No 143
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.3e-14 Score=118.23 Aligned_cols=81 Identities=19% Similarity=0.213 Sum_probs=71.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCC-eeEEEEE-EeCCC--CceEEEEEEcCHHHHHHHHHHC---CCCCCCeEEE
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGP-VKQGGIQ-VRHNK--GYCFGFVEFQSSSSVDNAIQAS---PITIGGQEAF 369 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~-v~~~~i~-~~~~~--g~g~aFV~F~~~e~a~~Al~~~---~~~i~gr~i~ 369 (460)
.+.++|||+|||+++++++|+++|++||. |..+.|. .++.+ .+|||||+|.+.++|++||+.+ +..|+|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35689999999999999999999999998 9998776 45443 4899999999999999999986 3789999999
Q ss_pred EEecccCC
Q 012564 370 VEKKKKTR 377 (460)
Q Consensus 370 V~~~~~~~ 377 (460)
|++++++.
T Consensus 86 V~~a~~~~ 93 (109)
T 2dis_A 86 VDWAEPEI 93 (109)
T ss_dssp EEESCSSC
T ss_pred EEEcCCCC
Confidence 99998763
No 144
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.50 E-value=9e-15 Score=113.09 Aligned_cols=73 Identities=15% Similarity=0.291 Sum_probs=66.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEEec
Q 012564 301 SIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEKK 373 (460)
Q Consensus 301 ~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~~~ 373 (460)
+|||+|||.++++++|+++|++||.|..+.|..+..+ .+|||||+|.+.++|++||+.++..|+|+.|+|..+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 5899999999999999999999999999888776654 489999999999999999998799999999999864
No 145
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.50 E-value=1.1e-14 Score=119.53 Aligned_cols=78 Identities=24% Similarity=0.364 Sum_probs=67.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
...++|||+|||+++++++|+++|++||.|.. .++.+..+ .+|||||+|.+.++|++||+ + +..|+|+.|+|+++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 34689999999999999999999999998876 34444333 58999999999999999999 7 99999999999999
Q ss_pred ccC
Q 012564 374 KKT 376 (460)
Q Consensus 374 ~~~ 376 (460)
+++
T Consensus 93 ~~~ 95 (101)
T 1fj7_A 93 KGR 95 (101)
T ss_dssp SCC
T ss_pred CCC
Confidence 865
No 146
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.50 E-value=9e-15 Score=117.32 Aligned_cols=76 Identities=28% Similarity=0.353 Sum_probs=68.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecccC
Q 012564 300 HSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKKKT 376 (460)
Q Consensus 300 ~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~~~ 376 (460)
++|||+|||.++++++|+++|++||.|..+.|..+..+ .+|||||+|.+.+ |++|+..+ +..|+|+.|+|+++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999988877654 4899999999999 99999998 99999999999999865
No 147
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.50 E-value=5.4e-14 Score=118.11 Aligned_cols=78 Identities=21% Similarity=0.300 Sum_probs=70.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecccC
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKKKT 376 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~~~ 376 (460)
..++|||+|||.++++++|+++|++||.|..+.|..+.. .+|||||+|.+.++|.+||+.+ +..|+|+.|.|+++++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPE-TRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNAN 85 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTT-TTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC-CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 468999999999999999999999999999988865432 4899999999999999999987 99999999999999865
No 148
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=6.4e-14 Score=120.22 Aligned_cols=78 Identities=10% Similarity=0.160 Sum_probs=68.0
Q ss_pred CCcEEEEcCCCCCCCHHHHH----HHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEe
Q 012564 298 EGHSIYIRNLPDTMTVASLE----VEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEK 372 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~----~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~ 372 (460)
..++|||+||++.+++++|+ ++|++||.|..|.|.. ..+.+|||||+|.+.++|.+||..+ +..|.|+.|+|++
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~-~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~ 106 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL-SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITF 106 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC-CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc-CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEE
Confidence 46899999999999999876 6999999998865532 1235899999999999999999999 9999999999999
Q ss_pred cccC
Q 012564 373 KKKT 376 (460)
Q Consensus 373 ~~~~ 376 (460)
++++
T Consensus 107 a~~~ 110 (127)
T 2a3j_A 107 SETP 110 (127)
T ss_dssp CCCC
T ss_pred ccCc
Confidence 9865
No 149
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.50 E-value=2.8e-14 Score=123.85 Aligned_cols=80 Identities=20% Similarity=0.172 Sum_probs=72.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCC---eeEEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEE
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGP---VKQGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFV 370 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~---v~~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V 370 (460)
..+.++|||+|||+++|+++|+++|++||. |..|.|+.++.. .+|||||+|.+.++|++||+ + +..|+||.|+|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 345789999999999999999999999999 888989888764 48999999999999999999 6 99999999999
Q ss_pred EecccC
Q 012564 371 EKKKKT 376 (460)
Q Consensus 371 ~~~~~~ 376 (460)
..+.+.
T Consensus 120 ~~a~~~ 125 (136)
T 2hgl_A 120 FKSHRT 125 (136)
T ss_dssp EECCHH
T ss_pred EECChH
Confidence 988653
No 150
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.49 E-value=5.6e-14 Score=123.88 Aligned_cols=79 Identities=23% Similarity=0.323 Sum_probs=71.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecc
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKK 374 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~ 374 (460)
....++|||+|||+++++++|+++|++||.|..+.|..+ .+|||||+|.+.++|.+||..+ +..|+|+.|+|++++
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN---PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS---SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence 345799999999999999999999999999999887544 4789999999999999999987 999999999999998
Q ss_pred cCC
Q 012564 375 KTR 377 (460)
Q Consensus 375 ~~~ 377 (460)
+++
T Consensus 147 ~~~ 149 (150)
T 2i2y_A 147 GEK 149 (150)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 151
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=5.1e-14 Score=114.27 Aligned_cols=77 Identities=14% Similarity=0.189 Sum_probs=68.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEE-EEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEeccc
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGG-IQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKKK 375 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~-i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~~ 375 (460)
..++|||+|||+++++++|+++|++||.|..++ |+.++.++ .|||+|.+.++|++||+.+ +..|+|+.|+|+++++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~--~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA--VVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE--EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC--EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 468999999999999999999999999999984 65554443 3999999999999999988 9999999999999987
Q ss_pred C
Q 012564 376 T 376 (460)
Q Consensus 376 ~ 376 (460)
+
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 5
No 152
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.49 E-value=4e-14 Score=113.72 Aligned_cols=77 Identities=18% Similarity=0.295 Sum_probs=62.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEEeccc
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEKKKK 375 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~~~~~ 375 (460)
....++|||+|||+++++++|+++|++||.|.++.|+.+ .+|||||+|.+.++|+++ ....+.++|+.|.|..+++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~---srGfaFV~F~~~~~A~~~-~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP---FRAFAFVTFADDKVAQSL-CGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS---CCSEEEEEESCHHHHHHH-TTCEEEETTEEEEEEECC-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC---CCCEEEEEECCHHHHHHH-cCCCcccCCEEEEEEEcCC
Confidence 456799999999999999999999999999999887553 589999999999999843 2225556799999999987
Q ss_pred C
Q 012564 376 T 376 (460)
Q Consensus 376 ~ 376 (460)
+
T Consensus 84 k 84 (89)
T 3d2w_A 84 K 84 (89)
T ss_dssp -
T ss_pred C
Confidence 5
No 153
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.48 E-value=2e-14 Score=119.42 Aligned_cols=81 Identities=14% Similarity=0.086 Sum_probs=71.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCC---eeEEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEE
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGP---VKQGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVE 371 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~---v~~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~ 371 (460)
..+.++|||+|||+++++++|+++|+.||. |..|.|+.+... .+|||||+|.+.++|++||...+..|+|+.|+|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 87 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEE
Confidence 346799999999999999999999999998 888888777663 4899999999999999999933999999999999
Q ss_pred ecccC
Q 012564 372 KKKKT 376 (460)
Q Consensus 372 ~~~~~ 376 (460)
.+.+.
T Consensus 88 ~a~~~ 92 (107)
T 2lmi_A 88 EINNE 92 (107)
T ss_dssp ECCHH
T ss_pred ECCHH
Confidence 88764
No 154
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.47 E-value=1.4e-13 Score=125.81 Aligned_cols=80 Identities=20% Similarity=0.319 Sum_probs=71.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEEeccc
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEKKKK 375 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~~~~~ 375 (460)
..++|||+|||.++++++|+++|++||.|..+.|..+..+ .+|||||+|.+.++|.+||..++..|+|+.|.|.++.+
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~~ 182 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 182 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC-
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecCC
Confidence 3589999999999999999999999999999999888655 48999999999999999999889999999999999987
Q ss_pred CC
Q 012564 376 TR 377 (460)
Q Consensus 376 ~~ 377 (460)
+.
T Consensus 183 k~ 184 (196)
T 1l3k_A 183 KQ 184 (196)
T ss_dssp --
T ss_pred hh
Confidence 63
No 155
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.47 E-value=3.9e-14 Score=121.27 Aligned_cols=78 Identities=19% Similarity=0.145 Sum_probs=68.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCee--EEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEEec
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVK--QGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEKK 373 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~--~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~~~ 373 (460)
.+.++|||+|||+++|+++|+++|++| .|. .|.|+.++.. .+|||||+|.+.++|++||+.++..|+||.|+|..+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKS 118 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEEC
Confidence 356889999999999999999999999 576 7888777664 489999999999999999997799999999999877
Q ss_pred cc
Q 012564 374 KK 375 (460)
Q Consensus 374 ~~ 375 (460)
.+
T Consensus 119 ~~ 120 (126)
T 2hgm_A 119 SQ 120 (126)
T ss_dssp CH
T ss_pred CH
Confidence 54
No 156
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=4.2e-14 Score=120.65 Aligned_cols=81 Identities=16% Similarity=0.122 Sum_probs=70.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCe----eEEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEE
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPV----KQGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQASPITIGGQEAFV 370 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v----~~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V 370 (460)
..+.++|||+|||+++|+++|+++|++||.| ..|.|+.+... .+|||||+|.+.++|++||+..+..|++|.|.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 3467899999999999999999999999975 57888777533 489999999999999999998788999999999
Q ss_pred EecccC
Q 012564 371 EKKKKT 376 (460)
Q Consensus 371 ~~~~~~ 376 (460)
..+.+.
T Consensus 100 ~~a~~~ 105 (123)
T 2dha_A 100 FRSTAA 105 (123)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 887654
No 157
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.46 E-value=4.2e-14 Score=114.91 Aligned_cols=79 Identities=24% Similarity=0.306 Sum_probs=69.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHH----HHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEE
Q 012564 297 VEGHSIYIRNLPDTMTVASLE----VEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVE 371 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~----~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~ 371 (460)
...++|||+|||.++++++|+ ++|++||.|..+.|.. ....+|||||+|.+.++|++|++.+ +..|+|+.|+|+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR-SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH-HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc-CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 457899999999999999999 9999999999977641 1124789999999999999999987 999999999999
Q ss_pred ecccC
Q 012564 372 KKKKT 376 (460)
Q Consensus 372 ~~~~~ 376 (460)
++++.
T Consensus 85 ~a~~~ 89 (97)
T 1nu4_A 85 YAKTD 89 (97)
T ss_dssp ECSSC
T ss_pred EccCC
Confidence 99875
No 158
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.46 E-value=1.9e-13 Score=121.66 Aligned_cols=76 Identities=20% Similarity=0.138 Sum_probs=68.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCC--eEEEEEeccc
Q 012564 299 GHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGG--QEAFVEKKKK 375 (460)
Q Consensus 299 ~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~g--r~i~V~~~~~ 375 (460)
..+|||+||++.+++++|+++|++||.|++|.|..++ .++||||+|.+.++|++|++.| +..|.| +.|+|+++++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~--~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN--NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 123 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS--SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence 4789999999999999999999999999998874332 4789999999999999999999 999955 9999999997
Q ss_pred C
Q 012564 376 T 376 (460)
Q Consensus 376 ~ 376 (460)
+
T Consensus 124 ~ 124 (164)
T 1sjr_A 124 T 124 (164)
T ss_dssp S
T ss_pred C
Confidence 6
No 159
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=4.6e-14 Score=112.78 Aligned_cols=76 Identities=17% Similarity=0.256 Sum_probs=64.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEEecccCC
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEKKKKTR 377 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~~~~~~~ 377 (460)
..++|||+|||+++++++|+++|++||.|..+.|..+ .+|||||+|.+.++|++++.. .+.++++.|+|.+++++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP---FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEPKH 79 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS---CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC---CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCCCC
Confidence 4689999999999999999999999999999877533 578999999999999865332 556699999999988653
No 160
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.46 E-value=4.3e-14 Score=116.14 Aligned_cols=79 Identities=18% Similarity=0.364 Sum_probs=71.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEEeccc
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEKKKK 375 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~~~~~ 375 (460)
...++|||+|||.++++++|+++|++||.|..+.|..+... .+|||||+|.+.++|++||. .++.|+|+.|.|..+.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECCc
Confidence 35689999999999999999999999999999999888733 48999999999999999999 88899999999998876
Q ss_pred C
Q 012564 376 T 376 (460)
Q Consensus 376 ~ 376 (460)
+
T Consensus 86 ~ 86 (102)
T 2xs2_A 86 K 86 (102)
T ss_dssp C
T ss_pred C
Confidence 5
No 161
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.45 E-value=1.5e-13 Score=128.25 Aligned_cols=78 Identities=23% Similarity=0.428 Sum_probs=73.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecccC
Q 012564 299 GHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKKKT 376 (460)
Q Consensus 299 ~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~~~ 376 (460)
.++|||+|||+++++++|+++|++||.|..+.|+.+..+.+|||||+|.+.++|++||+.| +..|+|+.|+|++++++
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 4689999999999999999999999999999998887667999999999999999999988 99999999999999875
No 162
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.45 E-value=3e-13 Score=115.91 Aligned_cols=75 Identities=21% Similarity=0.174 Sum_probs=67.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceE-EEEEEcCHHHHHHHHHHC-CCCCCC--eEEEEEecc
Q 012564 299 GHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCF-GFVEFQSSSSVDNAIQAS-PITIGG--QEAFVEKKK 374 (460)
Q Consensus 299 ~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~-aFV~F~~~e~a~~Al~~~-~~~i~g--r~i~V~~~~ 374 (460)
...|||+||++.+|+++|+++|++||.|.+|.|..+. ++| |||+|.+.++|++|++.| |..|.| +.|+|++++
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~---~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET---TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC---CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 4778999999999999999999999999998775532 577 999999999999999999 999987 899999999
Q ss_pred cC
Q 012564 375 KT 376 (460)
Q Consensus 375 ~~ 376 (460)
+.
T Consensus 105 ~~ 106 (130)
T 3zzy_A 105 LT 106 (130)
T ss_dssp CS
T ss_pred CC
Confidence 75
No 163
>1q42_A MTR2, mRNA transport regulator MTR2; NTF2-fold, nuclear export, translation; 1.75A {Candida albicans} SCOP: d.17.4.2 PDB: 1q40_A
Probab=99.44 E-value=9.8e-14 Score=122.78 Aligned_cols=101 Identities=11% Similarity=0.045 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHHHHHHhccCcc-----hhc------ccc----cCCceEEeeCCCCcceee------ccHHHHHHHHhcC
Q 012564 10 SAQVVGNAFVEQYYHILHSTPE-----LVF------RFY----QDSSVLSRPDSNGVMTSV------TTMEGINQKILSL 68 (460)
Q Consensus 10 ~~~~vg~~Fv~~YY~~l~~~p~-----~l~------~fY----~~~S~l~~~~~~~~~~~~------~g~~~I~~~~~~l 68 (460)
+....+..|++.||..|++.+. .|. ++| .+.|.|+|+|. .+ .|.++|.+++..|
T Consensus 24 ~~~r~aE~F~K~yyasLD~~r~~~~~~ql~~v~~f~~ly~~~l~~~a~liwNGn-----p~~~~~~~~gr~~fqk~w~~l 98 (201)
T 1q42_A 24 DPTQQLEPFLKRFLASLDLLYTQPTSQPFPNVESYATQLGSNLKRSSAIIVNGQ-----PIIPSPQEDCKLQFQKKWLQT 98 (201)
T ss_dssp CGGGTHHHHHHHHHHHHSCCCCCCTTCSSCCHHHHHTTTTTTEEEEEEEEETTE-----ECCCCSSCCHHHHHHHHHHTS
T ss_pred CcchhHHHHHHHHHHHhcccccccchhhccchhHHHHHhccccCCccEEEEcCc-----ccccccccccHHHHHHHHHhC
Confidence 5667899999999999998887 788 788 78899999998 77 8999999999999
Q ss_pred CCCcceEEEeeeeeeeeCC-CcEEEEEEEEEEcCCCCcccEEEeeeeeec
Q 012564 69 DYKNYKAEIKTADAQNSHK-EGVTVLVTGCLTGKDNLRRKFAQSFFLAPQ 117 (460)
Q Consensus 69 ~~~~~~~~i~s~d~q~s~~-~gili~V~G~~~~~~~~~~~F~q~F~L~~~ 117 (460)
|.. .|.|.++|||+..+ +.+||+|.|.|+.++...++|-|+|.|..+
T Consensus 99 P~S--qHqL~SlDahpIpGq~T~lI~asGkVrFDesgr~~fgQsf~Lta~ 146 (201)
T 1q42_A 99 PLS--SHQLTSYDGHLIPGTGTFVVHFSAKVRFDQSGRNRLGESADLFQE 146 (201)
T ss_dssp CCE--EEEEEEEEEEEETTTTEEEEEEEEEEEEBCSSCCTTSCCC-----
T ss_pred CCc--ceeeeeeecceeCCCcEEEEEEeEEEEECCCCcCcCCCcEEEecc
Confidence 955 99999999999964 569999999999999999999999999865
No 164
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.1e-13 Score=114.24 Aligned_cols=75 Identities=12% Similarity=0.148 Sum_probs=66.4
Q ss_pred CCcEEEE--cCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCC-----CCeEEE
Q 012564 298 EGHSIYI--RNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITI-----GGQEAF 369 (460)
Q Consensus 298 ~~~~lfV--~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i-----~gr~i~ 369 (460)
..++||| +||++++++++|+++|++||.|..+.|. .+++||||+|.+.++|++|++.| +.+| .++.|+
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~----~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~ 99 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP----PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 99 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECC----TTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEe----CCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEE
Confidence 4688999 6799999999999999999999987652 35789999999999999999999 8877 689999
Q ss_pred EEecccC
Q 012564 370 VEKKKKT 376 (460)
Q Consensus 370 V~~~~~~ 376 (460)
|.+++..
T Consensus 100 v~~a~~~ 106 (114)
T 2cq2_A 100 LNFVEKV 106 (114)
T ss_dssp EEEESCC
T ss_pred EEecccC
Confidence 9998754
No 165
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.44 E-value=6.3e-13 Score=113.30 Aligned_cols=73 Identities=23% Similarity=0.123 Sum_probs=65.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceE-EEEEEcCHHHHHHHHHHC-CCCCCC--eEEEEEeccc
Q 012564 300 HSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCF-GFVEFQSSSSVDNAIQAS-PITIGG--QEAFVEKKKK 375 (460)
Q Consensus 300 ~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~-aFV~F~~~e~a~~Al~~~-~~~i~g--r~i~V~~~~~ 375 (460)
..|||+||++.+++++|+++|++||.|++|.|.. + .|| |||+|.+.++|.+|++.| +..|.| +.|+|+++++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~---~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~ 101 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R---NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARP 101 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S---SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecC
Confidence 5578999999999999999999999999988744 2 276 999999999999999999 999977 6899999987
Q ss_pred C
Q 012564 376 T 376 (460)
Q Consensus 376 ~ 376 (460)
+
T Consensus 102 ~ 102 (124)
T 2e5i_A 102 T 102 (124)
T ss_dssp S
T ss_pred C
Confidence 6
No 166
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.43 E-value=3.8e-13 Score=122.13 Aligned_cols=81 Identities=15% Similarity=0.244 Sum_probs=73.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
....++|||+|||+++++++|+++|++||.|..|.|..+... .++||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 345789999999999999999999999999999998877633 4899999999999999999988 99999999999998
Q ss_pred ccC
Q 012564 374 KKT 376 (460)
Q Consensus 374 ~~~ 376 (460)
...
T Consensus 165 ~~~ 167 (177)
T 2f3j_A 165 ASQ 167 (177)
T ss_dssp SSG
T ss_pred cCC
Confidence 754
No 167
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.42 E-value=1.8e-13 Score=109.44 Aligned_cols=74 Identities=19% Similarity=0.308 Sum_probs=67.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecccC
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKKKT 376 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~~~ 376 (460)
..++|||+|||+++++++|+++|++| .|..+.|. +.+|||||+|.+.++|++||+.+ +..|+|+.|+|+++...
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 45889999999999999999999999 99988773 45889999999999999999988 99999999999998753
No 168
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.42 E-value=4.4e-13 Score=125.04 Aligned_cols=79 Identities=19% Similarity=0.264 Sum_probs=71.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecc
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKK 374 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~ 374 (460)
+.++|||+|||+++|+++|+++|++||.|.+|.|+.+..+ .+|||||+|.+.++|++||+.+ +..+.|+.|+|..+.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 4589999999999999999999999999999999888766 4899999999999999999988 888999999999876
Q ss_pred cC
Q 012564 375 KT 376 (460)
Q Consensus 375 ~~ 376 (460)
..
T Consensus 94 ~~ 95 (213)
T 4f02_A 94 RD 95 (213)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 169
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=4.9e-13 Score=107.06 Aligned_cols=70 Identities=24% Similarity=0.306 Sum_probs=62.6
Q ss_pred cEEEEcCCCCCCCHHH----HHHHhhcC-CCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 300 HSIYIRNLPDTMTVAS----LEVEFKKF-GPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 300 ~~lfV~nLp~~vte~~----L~~~F~~~-G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
+.|||+|||+.+++++ |+++|++| |+|.+| ++ |||||+|.+.++|++|++.| +..|.||.|+|.++
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg-G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A 81 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG-CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFT 81 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT-TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESS
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec-CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEec
Confidence 4499999999999988 55899999 599875 23 99999999999999999999 99999999999999
Q ss_pred ccCC
Q 012564 374 KKTR 377 (460)
Q Consensus 374 ~~~~ 377 (460)
+.++
T Consensus 82 ~~~s 85 (96)
T 2diu_A 82 PKNR 85 (96)
T ss_dssp CCSC
T ss_pred CCCc
Confidence 9764
No 170
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.42 E-value=5.1e-13 Score=122.02 Aligned_cols=81 Identities=22% Similarity=0.344 Sum_probs=73.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCC--ceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEEec
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKG--YCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEKK 373 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g--~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~~~ 373 (460)
..+.++|||+|||+++++++|+++|++||.|..|.|+.+..++ +|||||+|.+.++|++||+.++..|+|+.|.|..+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA 89 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecc
Confidence 3467999999999999999999999999999999998887654 89999999999999999998899999999999988
Q ss_pred ccC
Q 012564 374 KKT 376 (460)
Q Consensus 374 ~~~ 376 (460)
.+.
T Consensus 90 ~~~ 92 (196)
T 1l3k_A 90 VSR 92 (196)
T ss_dssp CC-
T ss_pred cCc
Confidence 754
No 171
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.42 E-value=2.7e-13 Score=118.52 Aligned_cols=79 Identities=14% Similarity=0.269 Sum_probs=68.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEE------EEEEeC-CCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEE
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQG------GIQVRH-NKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAF 369 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~------~i~~~~-~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~ 369 (460)
..++|||+|||+++++++|+++|++||.|..+ .|.... ...+|||||+|.+.++|.+||..+ +..|+|+.|+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 123 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 123 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 45899999999999999999999999998764 222222 236899999999999999999988 9999999999
Q ss_pred EEecccC
Q 012564 370 VEKKKKT 376 (460)
Q Consensus 370 V~~~~~~ 376 (460)
|+++++.
T Consensus 124 V~~a~~~ 130 (143)
T 3egn_A 124 VQFARSA 130 (143)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9999864
No 172
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.41 E-value=4e-13 Score=106.75 Aligned_cols=70 Identities=27% Similarity=0.417 Sum_probs=63.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcC----C-------CeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCC
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKF----G-------PVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGG 365 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~----G-------~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~g 365 (460)
+.++|||+|||+++++++|+++|++| | .|..+.+. +.++||||+|.+.++|++|| .+ +..|+|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~----~~kg~afV~f~~~~~a~~A~-~l~g~~~~g 79 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN----QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 79 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC----SSSSEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec----CCCcEEEEEcCCHHHHHHHH-hcCCCEECC
Confidence 46899999999999999999999999 8 89887763 34789999999999999999 77 999999
Q ss_pred eEEEEEe
Q 012564 366 QEAFVEK 372 (460)
Q Consensus 366 r~i~V~~ 372 (460)
+.|+|+.
T Consensus 80 ~~l~V~r 86 (87)
T 2hzc_A 80 QSLKIRR 86 (87)
T ss_dssp EECEEEC
T ss_pred eEEEEeC
Confidence 9999973
No 173
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.40 E-value=1.5e-12 Score=115.23 Aligned_cols=77 Identities=18% Similarity=0.336 Sum_probs=71.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecc
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKK 374 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~ 374 (460)
..++|||+|||.++++++|+++|++||.|..+.|..+..+ .+|||||+|.+.++|.+||..+ +..|+|+.|+|.+++
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 4689999999999999999999999999999999888655 3899999999999999999988 999999999999986
No 174
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.39 E-value=5.6e-13 Score=112.80 Aligned_cols=76 Identities=18% Similarity=0.149 Sum_probs=67.6
Q ss_pred cEEEEcCC----CCCCCHHHHHHHhhcCCCeeEEEEEEeCCCC--ceEEEEEEcC----H-HH---HHHHHH--HC-CCC
Q 012564 300 HSIYIRNL----PDTMTVASLEVEFKKFGPVKQGGIQVRHNKG--YCFGFVEFQS----S-SS---VDNAIQ--AS-PIT 362 (460)
Q Consensus 300 ~~lfV~nL----p~~vte~~L~~~F~~~G~v~~~~i~~~~~~g--~g~aFV~F~~----~-e~---a~~Al~--~~-~~~ 362 (460)
+.|||+|| ++.+++.+|+++|++||+|..|.++.|+.++ +|||||+|.+ + ++ |.+|+. .+ +..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999995 9999999996 3 22 788888 55 999
Q ss_pred CCCeEEEEEeccc
Q 012564 363 IGGQEAFVEKKKK 375 (460)
Q Consensus 363 i~gr~i~V~~~~~ 375 (460)
|+|+.|+|+..+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998763
No 175
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.39 E-value=1.1e-12 Score=120.83 Aligned_cols=80 Identities=19% Similarity=0.206 Sum_probs=72.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEEeccc
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEKKKK 375 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~~~~~ 375 (460)
...++|||+|||+++++++|+++|++||.|..|.|..+... .+|||||+|.+.++|++||..++..|+|+.|.|.+++.
T Consensus 107 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 107 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred cccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 34689999999999999999999999999999998877654 48999999999999999998888899999999998875
Q ss_pred C
Q 012564 376 T 376 (460)
Q Consensus 376 ~ 376 (460)
.
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 4
No 176
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.39 E-value=1.5e-12 Score=115.48 Aligned_cols=78 Identities=17% Similarity=0.332 Sum_probs=72.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCC--ceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEeccc
Q 012564 299 GHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKG--YCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKKK 375 (460)
Q Consensus 299 ~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g--~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~~ 375 (460)
.++|||+|||.++++++|+++|++||.|..+.|..+..++ +|||||+|.+.++|++||+.+ +..|+|+.|+|.++++
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5899999999999999999999999999999998877553 799999999999999999987 9999999999999886
Q ss_pred C
Q 012564 376 T 376 (460)
Q Consensus 376 ~ 376 (460)
.
T Consensus 82 ~ 82 (167)
T 1fxl_A 82 S 82 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 177
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.38 E-value=1.1e-12 Score=116.58 Aligned_cols=80 Identities=24% Similarity=0.377 Sum_probs=72.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecc
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKK 374 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~ 374 (460)
..++|||+|||.++++++|+++|++||.|..+.|..+..+ .+|||||+|.+.++|++|++.+ +..|+|+.|+|.+++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 3589999999999999999999999999999998887655 3799999999999999999977 999999999999988
Q ss_pred cCC
Q 012564 375 KTR 377 (460)
Q Consensus 375 ~~~ 377 (460)
+..
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 653
No 178
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=5.6e-13 Score=111.97 Aligned_cols=76 Identities=20% Similarity=0.384 Sum_probs=64.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC-----CceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEE
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK-----GYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVE 371 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~-----g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~ 371 (460)
...++|||+|||+++++++|+++|++||.|. +.++.+..+ .+|||||+|.+.++|++||+.+ ..++|+.|.+.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~~~~ 83 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLYLCV 83 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEEEec
Confidence 3468999999999999999999999999999 666665543 4899999999999999999998 44788888776
Q ss_pred ecc
Q 012564 372 KKK 374 (460)
Q Consensus 372 ~~~ 374 (460)
...
T Consensus 84 ~~~ 86 (114)
T 2dnl_A 84 SSP 86 (114)
T ss_dssp CCS
T ss_pred cCC
Confidence 544
No 179
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.37 E-value=2.6e-12 Score=119.14 Aligned_cols=80 Identities=20% Similarity=0.388 Sum_probs=73.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecc
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKK 374 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~ 374 (460)
..++|||+|||.++++++|+++|++||.|..+.|..+..+ .+|||||+|.+.++|.+||+.+ +..|+|+.|+|++++
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 203 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECS
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEec
Confidence 4589999999999999999999999999999999888655 3899999999999999999988 999999999999998
Q ss_pred cCC
Q 012564 375 KTR 377 (460)
Q Consensus 375 ~~~ 377 (460)
+..
T Consensus 204 ~~~ 206 (216)
T 2qfj_A 204 TPP 206 (216)
T ss_dssp SCS
T ss_pred CCC
Confidence 763
No 180
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.37 E-value=1.3e-12 Score=111.13 Aligned_cols=74 Identities=20% Similarity=0.307 Sum_probs=67.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEeccc
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKKK 375 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~~ 375 (460)
...++|||+|| ++++++|+++|++||.|..|.|. ..+|||||+|.+.++|++||+.+ +..|+|+.|+|+++++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 35789999996 69999999999999999998773 45789999999999999999887 9999999999999987
Q ss_pred C
Q 012564 376 T 376 (460)
Q Consensus 376 ~ 376 (460)
.
T Consensus 111 ~ 111 (121)
T 2bz2_A 111 Q 111 (121)
T ss_dssp S
T ss_pred C
Confidence 5
No 181
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.37 E-value=8.8e-13 Score=122.56 Aligned_cols=76 Identities=20% Similarity=0.159 Sum_probs=69.0
Q ss_pred CCcEEEEcCCC-CCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEeccc
Q 012564 298 EGHSIYIRNLP-DTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKKK 375 (460)
Q Consensus 298 ~~~~lfV~nLp-~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~~ 375 (460)
++++|||+||+ +.+++++|+++|++||.|.+|+|+.+ .+|||||+|.+.++|++||+.| +..|.|+.|+|.+++.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~---~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS---KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT---STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC---CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 57899999999 89999999999999999999887533 3789999999999999999988 9999999999999874
Q ss_pred C
Q 012564 376 T 376 (460)
Q Consensus 376 ~ 376 (460)
.
T Consensus 80 ~ 80 (205)
T 3tyt_A 80 P 80 (205)
T ss_dssp S
T ss_pred C
Confidence 3
No 182
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.36 E-value=5.6e-12 Score=115.25 Aligned_cols=81 Identities=20% Similarity=0.400 Sum_probs=74.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCC--ceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKG--YCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g--~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
...++|||+|||.++++++|+++|++||.|..+.|..+..++ +|||||+|.+.++|.+||+.+ +..|+|+.|+|+++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 467999999999999999999999999999999998886553 899999999999999999987 99999999999999
Q ss_pred ccCC
Q 012564 374 KKTR 377 (460)
Q Consensus 374 ~~~~ 377 (460)
+++.
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8753
No 183
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.35 E-value=1.1e-12 Score=116.67 Aligned_cols=78 Identities=17% Similarity=0.351 Sum_probs=70.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEEecccC
Q 012564 299 GHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEKKKKT 376 (460)
Q Consensus 299 ~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~~~~~~ 376 (460)
.++|||+|||.++++++|+++|++||.|..+.|..+..+ .+|||||+|.+.++|.+||+..+..|+|+.|+|.++.|+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCCC
Confidence 468999999999999999999999999999988777544 489999999999999999984489999999999999874
No 184
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.35 E-value=2.7e-12 Score=114.67 Aligned_cols=75 Identities=20% Similarity=0.431 Sum_probs=70.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 299 GHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 299 ~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
.++|||+|||.++++++|+++|++||.|..+.|..+..+ .+|||||+|.+.++|.+|++.+ +..|+|+.|.|+++
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 688999999999999999999999999999999888655 3899999999999999999987 99999999999986
No 185
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.35 E-value=1.5e-12 Score=115.33 Aligned_cols=77 Identities=22% Similarity=0.320 Sum_probs=70.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecccC
Q 012564 300 HSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKKKT 376 (460)
Q Consensus 300 ~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~~~ 376 (460)
++|||+|||.++++++|+++|++||.|..+.|..+... .+|||||+|.+.++|++||+.+ +..|.|+.|+|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 58999999999999999999999999999988777654 5899999999999999999877 99999999999998764
No 186
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.34 E-value=9.7e-12 Score=120.54 Aligned_cols=77 Identities=22% Similarity=0.297 Sum_probs=69.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCC-CeEEEEEe
Q 012564 295 EEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIG-GQEAFVEK 372 (460)
Q Consensus 295 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~-gr~i~V~~ 372 (460)
.....++|||+|||.++++++|+++|++||.|..+.|..++ +|||||+|.+.++|.+||+.+ +..|+ |+.|+|++
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR---HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC---CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 44567899999999999999999999999999998876333 589999999999999999999 99998 99999999
Q ss_pred cc
Q 012564 373 KK 374 (460)
Q Consensus 373 ~~ 374 (460)
++
T Consensus 280 ak 281 (282)
T 3pgw_A 280 AK 281 (282)
T ss_pred ec
Confidence 86
No 187
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.30 E-value=1.3e-11 Score=109.73 Aligned_cols=76 Identities=26% Similarity=0.381 Sum_probs=68.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCC--eEEEEEe
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGG--QEAFVEK 372 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~g--r~i~V~~ 372 (460)
..++|||+|||..+++++|+++|++||.|..+.|..+..+ .+|||||+|.+.++|.+|++.+ +..|+| +.|+|.+
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~ 167 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRL 167 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEe
Confidence 4589999999999999999999999999999998887655 3899999999999999999988 999977 9999987
Q ss_pred c
Q 012564 373 K 373 (460)
Q Consensus 373 ~ 373 (460)
+
T Consensus 168 A 168 (168)
T 1b7f_A 168 A 168 (168)
T ss_dssp C
T ss_pred C
Confidence 4
No 188
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.30 E-value=2.6e-12 Score=114.21 Aligned_cols=78 Identities=24% Similarity=0.336 Sum_probs=69.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEEeccc
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEKKKK 375 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~~~~~ 375 (460)
+.++|||+|||.++++++|+++|++||.|..+.|+.+..+ .+|||||+|.+.++|++||.. +..|+|+.|.|..+.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccc
Confidence 4689999999999999999999999999999988777654 489999999999999999996 6789999999988765
Q ss_pred C
Q 012564 376 T 376 (460)
Q Consensus 376 ~ 376 (460)
.
T Consensus 81 ~ 81 (167)
T 2cjk_A 81 R 81 (167)
T ss_dssp H
T ss_pred h
Confidence 4
No 189
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.29 E-value=5e-12 Score=117.22 Aligned_cols=80 Identities=18% Similarity=0.346 Sum_probs=70.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC--CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 297 VEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK--GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 297 ~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~--g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
.+.++|||+|||.++++++|+++|++||.|..+.|+.+..+ .++||||+|.+.++|++||+.+ +..|+|+.|+|...
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 34689999999999999999999999999999988777644 4899999999999999999977 99999999999876
Q ss_pred ccC
Q 012564 374 KKT 376 (460)
Q Consensus 374 ~~~ 376 (460)
...
T Consensus 106 ~~~ 108 (216)
T 2qfj_A 106 SNI 108 (216)
T ss_dssp SCC
T ss_pred CCc
Confidence 543
No 190
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.28 E-value=5.3e-12 Score=119.01 Aligned_cols=77 Identities=17% Similarity=0.195 Sum_probs=69.9
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecc
Q 012564 297 VEGHSIYIRNLPD-TMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKK 374 (460)
Q Consensus 297 ~~~~~lfV~nLp~-~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~ 374 (460)
.+.++|||+|||. ++++++|+++|++||.|..|.|..+. ++||||+|.+.++|++||+.+ +..|+|+.|+|++++
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~---~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 108 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 108 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT---SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC---CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 4579999999999 99999999999999999998875543 789999999999999999977 999999999999988
Q ss_pred cC
Q 012564 375 KT 376 (460)
Q Consensus 375 ~~ 376 (460)
+.
T Consensus 109 ~~ 110 (229)
T 2adc_A 109 HQ 110 (229)
T ss_dssp CC
T ss_pred Cc
Confidence 65
No 191
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.28 E-value=1.5e-11 Score=109.80 Aligned_cols=79 Identities=14% Similarity=0.225 Sum_probs=69.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC----CceEEEEEEcCHHHHHHHHHHC-CCCCC---CeEEE
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK----GYCFGFVEFQSSSSVDNAIQAS-PITIG---GQEAF 369 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~----g~g~aFV~F~~~e~a~~Al~~~-~~~i~---gr~i~ 369 (460)
+.++|||+|||+++++++|+++|++||.|..+.|+.+..+ .+|||||+|.+.++|++||+.+ +..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 4689999999999999999999999999999999888765 3899999999999999999988 66664 57788
Q ss_pred EEecccC
Q 012564 370 VEKKKKT 376 (460)
Q Consensus 370 V~~~~~~ 376 (460)
+..+.+.
T Consensus 82 ~~~~~~~ 88 (175)
T 3nmr_A 82 MKPADSE 88 (175)
T ss_dssp EEECGGG
T ss_pred Ecccccc
Confidence 8877654
No 192
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.27 E-value=1.6e-11 Score=108.70 Aligned_cols=76 Identities=26% Similarity=0.425 Sum_probs=68.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCC--ceEEEEEEcCHHHHHHHHHHC-CCCCCCeE--EEEEe
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKG--YCFGFVEFQSSSSVDNAIQAS-PITIGGQE--AFVEK 372 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g--~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~--i~V~~ 372 (460)
..++|||+|||..+++++|+++|++||.|..+.|..+..++ +|||||+|.+.++|.+|++.+ +..|+|+. |+|.+
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 35789999999999999999999999999999988876553 899999999999999999988 99999975 77776
Q ss_pred c
Q 012564 373 K 373 (460)
Q Consensus 373 ~ 373 (460)
+
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 193
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.27 E-value=1.1e-11 Score=110.73 Aligned_cols=76 Identities=20% Similarity=0.285 Sum_probs=67.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHC-CCCCC---CeEEEEEe
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQAS-PITIG---GQEAFVEK 372 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~-~~~i~---gr~i~V~~ 372 (460)
..++|||+|||.++++++|+++|++||.|..+.|..+... .+|||||+|.+.++|.+||+.+ +..+. ++.|+|.+
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 4578999999999999999999999999999998877654 4899999999999999999988 77665 49999987
Q ss_pred c
Q 012564 373 K 373 (460)
Q Consensus 373 ~ 373 (460)
+
T Consensus 174 a 174 (175)
T 3nmr_A 174 A 174 (175)
T ss_dssp C
T ss_pred c
Confidence 6
No 194
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.27 E-value=1.3e-11 Score=119.55 Aligned_cols=80 Identities=24% Similarity=0.297 Sum_probs=70.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH----HHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEE
Q 012564 296 EVEGHSIYIRNLPDTMTVASLE----VEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFV 370 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~----~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V 370 (460)
....++|||+|||+++++++|+ ++|++||.|..|.|.. ..+.+|||||+|.+.++|++||+.+ +..|.|+.|+|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR-SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC-CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 3457999999999999999977 8999999999987654 2235899999999999999999888 99999999999
Q ss_pred EecccC
Q 012564 371 EKKKKT 376 (460)
Q Consensus 371 ~~~~~~ 376 (460)
++++..
T Consensus 85 ~~a~~~ 90 (282)
T 3pgw_A 85 QYAKTD 90 (282)
T ss_pred EEeccC
Confidence 998764
No 195
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.26 E-value=7.1e-12 Score=112.41 Aligned_cols=76 Identities=14% Similarity=0.253 Sum_probs=67.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecccC
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKKKT 376 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~~~ 376 (460)
..++|||+|||.++++++|+++|++||.|..+ ......+|||||+|.+.++|.+||..+ +..|+|+.|+|++++++
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE---CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe---cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 46899999999999999999999999998764 222225899999999999999999987 99999999999999874
No 196
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.26 E-value=2e-11 Score=101.05 Aligned_cols=79 Identities=18% Similarity=0.102 Sum_probs=68.7
Q ss_pred CCcEEEEcCCCC-----CCCHHHHHHHhhcCCCeeEEEEEEeCCC---CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEE
Q 012564 298 EGHSIYIRNLPD-----TMTVASLEVEFKKFGPVKQGGIQVRHNK---GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEA 368 (460)
Q Consensus 298 ~~~~lfV~nLp~-----~vte~~L~~~F~~~G~v~~~~i~~~~~~---g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i 368 (460)
..+.|+|+||-. +.++++|+++|++||.|.++.|..+... .+||+||+|.+.++|.+|++.| +..|+||.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 468999999953 2368999999999999999999887542 5899999999999999999998 999999999
Q ss_pred EEEecccC
Q 012564 369 FVEKKKKT 376 (460)
Q Consensus 369 ~V~~~~~~ 376 (460)
+|+++.+.
T Consensus 87 ~v~~a~~~ 94 (105)
T 2pe8_A 87 KACFYNLD 94 (105)
T ss_dssp EEEECCHH
T ss_pred EEEEcCHH
Confidence 99998753
No 197
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=5.2e-11 Score=99.54 Aligned_cols=79 Identities=22% Similarity=0.260 Sum_probs=67.0
Q ss_pred CCCCcEEEEcCCCCCCC-----------HHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCC
Q 012564 296 EVEGHSIYIRNLPDTMT-----------VASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITI 363 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vt-----------e~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i 363 (460)
....++|+|.||-.... +++|+++|++||.|..|.| .++. .+|||||+|.+.++|++||..+ +..|
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~-~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRH-PDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTC-TTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCC-CCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 34578999999944332 5799999999999999855 4433 6899999999999999999999 9999
Q ss_pred CCeEEEEEecccC
Q 012564 364 GGQEAFVEKKKKT 376 (460)
Q Consensus 364 ~gr~i~V~~~~~~ 376 (460)
+|+.|+|+++.++
T Consensus 90 ~gr~l~v~~a~~~ 102 (112)
T 2dit_A 90 GGRQITAQAWDGT 102 (112)
T ss_dssp TTEECEEEECCSC
T ss_pred CCcEEEEEEeCCC
Confidence 9999999999875
No 198
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.25 E-value=6.4e-12 Score=118.90 Aligned_cols=77 Identities=16% Similarity=0.307 Sum_probs=68.4
Q ss_pred CCCCcEEEEcCCCCCC---------CHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCC--
Q 012564 296 EVEGHSIYIRNLPDTM---------TVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITI-- 363 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~v---------te~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i-- 363 (460)
....++|||+||+..+ ++++|+++|++||.|..|.|+. .+|||||+|.+.++|+.|+++| +..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~----~kG~AFV~F~~~~~Ae~A~~am~g~~l~~ 206 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE----SKNCGFVKFKYQANAEFAKEAMSNQTLLL 206 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG----GGTEEEEEESSHHHHHHHHHHHTTCCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC----CCCEEEEEeCCHHHHHHHHHHhCCCEEec
Confidence 4567999999999998 7999999999999999988753 4789999999999999999999 8888
Q ss_pred ----------CCeEEEEEecccC
Q 012564 364 ----------GGQEAFVEKKKKT 376 (460)
Q Consensus 364 ----------~gr~i~V~~~~~~ 376 (460)
.|+.|.|.+++..
T Consensus 207 ~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 207 PSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp TTSTTGGGGGGSCCCEEEECC--
T ss_pred cccccccccCCCCEEEEEEccCC
Confidence 8999999999864
No 199
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.22 E-value=8.3e-12 Score=114.50 Aligned_cols=76 Identities=17% Similarity=0.197 Sum_probs=68.6
Q ss_pred CCcEEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEeccc
Q 012564 298 EGHSIYIRNLPD-TMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKKK 375 (460)
Q Consensus 298 ~~~~lfV~nLp~-~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~~ 375 (460)
..++|||+|||. ++++++|+++|++||.|..+.|..+. +|||||+|.+.++|++||+.+ +..|+|+.|+|.++++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~---~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC---SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 368999999999 99999999999999999998774433 689999999999999999977 9999999999999886
Q ss_pred C
Q 012564 376 T 376 (460)
Q Consensus 376 ~ 376 (460)
.
T Consensus 79 ~ 79 (198)
T 1qm9_A 79 Q 79 (198)
T ss_dssp C
T ss_pred C
Confidence 5
No 200
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.19 E-value=3.4e-11 Score=117.25 Aligned_cols=81 Identities=21% Similarity=0.335 Sum_probs=70.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEEecc
Q 012564 295 EEVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEKKK 374 (460)
Q Consensus 295 ~~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~~~~ 374 (460)
.....++|||+|||.++++++|+++|++||.|..|.|..+..+.++||||+|.+.++|++||+..+..|+|+.|.|....
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~ 116 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLT 116 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEECC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEECC
Confidence 45668999999999999999999999999999999998877667899999999999999999633999999999999875
Q ss_pred c
Q 012564 375 K 375 (460)
Q Consensus 375 ~ 375 (460)
.
T Consensus 117 ~ 117 (292)
T 2ghp_A 117 E 117 (292)
T ss_dssp S
T ss_pred C
Confidence 4
No 201
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.18 E-value=4.4e-11 Score=115.03 Aligned_cols=77 Identities=16% Similarity=0.277 Sum_probs=69.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecc
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKK 374 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~ 374 (460)
..+.++|||+|||.++|+++|+++|++||.|..|.|. +.+|||||+|.+.++|.+||..+ +..|+|+.|+|.++.
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~----~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN----RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe----CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 3456899999999999999999999999999998772 34789999999999999999977 999999999999887
Q ss_pred cC
Q 012564 375 KT 376 (460)
Q Consensus 375 ~~ 376 (460)
+.
T Consensus 95 ~~ 96 (261)
T 3sde_A 95 HG 96 (261)
T ss_dssp CS
T ss_pred cC
Confidence 64
No 202
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.18 E-value=5e-11 Score=115.61 Aligned_cols=80 Identities=14% Similarity=0.216 Sum_probs=72.9
Q ss_pred CCCcEEEEcCCCCCC-CHHHHHHHhhcCCCeeEEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEec
Q 012564 297 VEGHSIYIRNLPDTM-TVASLEVEFKKFGPVKQGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKK 373 (460)
Q Consensus 297 ~~~~~lfV~nLp~~v-te~~L~~~F~~~G~v~~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~ 373 (460)
...++|||+|||..+ ++++|+++|++||.|..+.|..+... .+|||||+|.+.++|.+||..+ +..|+|+.|+|.++
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 261 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFC 261 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEe
Confidence 346899999999995 99999999999999999998877654 4899999999999999999988 99999999999999
Q ss_pred ccC
Q 012564 374 KKT 376 (460)
Q Consensus 374 ~~~ 376 (460)
+++
T Consensus 262 ~~~ 264 (284)
T 3smz_A 262 APG 264 (284)
T ss_dssp CSS
T ss_pred cCC
Confidence 875
No 203
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.17 E-value=3.3e-11 Score=117.37 Aligned_cols=79 Identities=27% Similarity=0.468 Sum_probs=71.7
Q ss_pred CCCcEEEEcCCCCC-CCHHHHHHHhhcCCCeeEEEEEEeCC--C-CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEE
Q 012564 297 VEGHSIYIRNLPDT-MTVASLEVEFKKFGPVKQGGIQVRHN--K-GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVE 371 (460)
Q Consensus 297 ~~~~~lfV~nLp~~-vte~~L~~~F~~~G~v~~~~i~~~~~--~-g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~ 371 (460)
...++|||+|||.. +++++|+++|++||.|..+.|..+.. . .+|||||+|.+.++|.+|| .+ +..|+|+.|.|.
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~ 286 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVS 286 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEE
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEE
Confidence 45689999999999 99999999999999999998877765 3 5899999999999999999 77 999999999999
Q ss_pred ecccC
Q 012564 372 KKKKT 376 (460)
Q Consensus 372 ~~~~~ 376 (460)
+++++
T Consensus 287 ~a~~k 291 (292)
T 2ghp_A 287 LADKK 291 (292)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99864
No 204
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.16 E-value=9.7e-11 Score=113.59 Aligned_cols=78 Identities=19% Similarity=0.327 Sum_probs=72.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCC--ceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEeccc
Q 012564 299 GHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKG--YCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKKK 375 (460)
Q Consensus 299 ~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g--~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~~ 375 (460)
.++|||+|||.++++++|+++|++||.|..+.|..+..++ +|||||+|.+.++|.+||..+ +..|+|+.|.|.++.+
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~ 174 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDA 174 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCG
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 3789999999999999999999999999999988876653 899999999999999999887 9999999999999986
Q ss_pred C
Q 012564 376 T 376 (460)
Q Consensus 376 ~ 376 (460)
.
T Consensus 175 ~ 175 (284)
T 3smz_A 175 G 175 (284)
T ss_dssp G
T ss_pred C
Confidence 5
No 205
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.16 E-value=7.7e-11 Score=110.98 Aligned_cols=76 Identities=18% Similarity=0.219 Sum_probs=68.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCC-CeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCC-CeEEEEEecc
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFG-PVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIG-GQEAFVEKKK 374 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G-~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~-gr~i~V~~~~ 374 (460)
..++|||+|||.++++++|+++|++|| .|..+.|..+ .++||||+|.+.++|.+||+.+ +..|+ |+.|+|.+++
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK---DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS---STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC---CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 468999999999999999999999999 9998776332 3689999999999999999988 99999 9999999998
Q ss_pred cC
Q 012564 375 KT 376 (460)
Q Consensus 375 ~~ 376 (460)
++
T Consensus 227 ~~ 228 (229)
T 2adc_A 227 ST 228 (229)
T ss_dssp SC
T ss_pred CC
Confidence 63
No 206
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.16 E-value=3.4e-11 Score=110.35 Aligned_cols=76 Identities=18% Similarity=0.219 Sum_probs=68.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCC-CeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCC-CeEEEEEecc
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFG-PVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIG-GQEAFVEKKK 374 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G-~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~-gr~i~V~~~~ 374 (460)
..++|||+|||..+++++|+++|++|| .|..+.|..+ .+|||||+|.+.++|.+||..+ +..|+ |+.|+|.+++
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK---DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST---TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC---CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 468999999999999999999999999 9999776332 3789999999999999999988 99999 9999999987
Q ss_pred cC
Q 012564 375 KT 376 (460)
Q Consensus 375 ~~ 376 (460)
+.
T Consensus 196 ~~ 197 (198)
T 1qm9_A 196 ST 197 (198)
T ss_dssp CC
T ss_pred cc
Confidence 63
No 207
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.15 E-value=5.4e-11 Score=106.11 Aligned_cols=74 Identities=27% Similarity=0.402 Sum_probs=64.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcC----C-------CeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCC
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKF----G-------PVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGG 365 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~----G-------~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~g 365 (460)
+.++|||+|||.++++++|+++|++| | .|..+.+ ...+|||||+|.+.++|++|| .+ +..|+|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~----~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g 77 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI----NQDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE----ETTTTEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe----cCCCCEEEEEeCCHHHHHHHH-HhCCcEecC
Confidence 46899999999999999999999999 6 6666554 234799999999999999999 56 999999
Q ss_pred eEEEEEecccC
Q 012564 366 QEAFVEKKKKT 376 (460)
Q Consensus 366 r~i~V~~~~~~ 376 (460)
+.|+|......
T Consensus 78 ~~i~v~~~~~~ 88 (172)
T 2g4b_A 78 QSLKIRRPHDY 88 (172)
T ss_dssp EECEEECCSSC
T ss_pred ceeeecCCccc
Confidence 99999987654
No 208
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=4.9e-10 Score=91.70 Aligned_cols=75 Identities=13% Similarity=0.083 Sum_probs=61.9
Q ss_pred CcEEEEcCCC-------CCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEE
Q 012564 299 GHSIYIRNLP-------DTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVE 371 (460)
Q Consensus 299 ~~~lfV~nLp-------~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~ 371 (460)
.++|-|.-.. .++++++|+++|++||.|..|.|+ ...+|||||+|.+.++|++||+.+ ..+.++.|+|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~---~~~rGfaFVeF~~~~~A~~Ai~~~-~~~~g~~l~V~ 85 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS---SKKPGTAVVEFATVKAAELAVQNE-VGLVDNPLKIS 85 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE---SSSSSEEEEEESCHHHHHHHHHTC-CBCSSSBCEEE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc---cCCCCEEEEEECCHHHHHHHHHhc-CCCCCCeEEEE
Confidence 4566666543 458999999999999999998875 235899999999999999999984 55679999999
Q ss_pred ecccCC
Q 012564 372 KKKKTR 377 (460)
Q Consensus 372 ~~~~~~ 377 (460)
+++++.
T Consensus 86 ~a~~~~ 91 (100)
T 2d9o_A 86 WLEGQP 91 (100)
T ss_dssp CSSCCC
T ss_pred EccCCC
Confidence 988653
No 209
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.14 E-value=3.8e-11 Score=111.46 Aligned_cols=69 Identities=12% Similarity=0.084 Sum_probs=60.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCe--eEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCe
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPV--KQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQ 366 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v--~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr 366 (460)
+.++|||+|||+++++++|+++|++||.| ..+.|..++...+|||||+|.+.++|.+||..| +..|+|+
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 46889999999999999999999999999 787775554334699999999999999999999 8888776
No 210
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.13 E-value=7.3e-11 Score=107.75 Aligned_cols=74 Identities=27% Similarity=0.392 Sum_probs=63.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcC----C-------CeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCC
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKF----G-------PVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGG 365 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~----G-------~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~g 365 (460)
..++|||+|||+++++++|+++|++| | .|..+.+ ...+|||||+|.+.++|++|| .+ +..|+|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~----~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI----NQDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE----ETTTTEEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe----cCCCCEEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 46899999999999999999999999 5 5555444 335799999999999999999 56 999999
Q ss_pred eEEEEEecccC
Q 012564 366 QEAFVEKKKKT 376 (460)
Q Consensus 366 r~i~V~~~~~~ 376 (460)
+.|+|.+++..
T Consensus 78 ~~i~v~~~~~~ 88 (198)
T 2yh0_A 78 QSLKIRRPHDY 88 (198)
T ss_dssp EEEEEECCCCC
T ss_pred ceEEEeCCCCC
Confidence 99999987754
No 211
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.12 E-value=1.8e-11 Score=109.84 Aligned_cols=81 Identities=22% Similarity=0.358 Sum_probs=66.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeC-CCCceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEEecc
Q 012564 296 EVEGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRH-NKGYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEKKK 374 (460)
Q Consensus 296 ~~~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~-~~g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~~~~ 374 (460)
..+.++|||+|||.++++++|+++|++||.+..+.|.... ...+|||||+|.+.++|++||+..+..|+|+.|+|.++.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~ 89 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 89 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCC
Confidence 4467999999999999999999999999876552221111 225899999999999999999633999999999999987
Q ss_pred cC
Q 012564 375 KT 376 (460)
Q Consensus 375 ~~ 376 (460)
+.
T Consensus 90 ~~ 91 (175)
T 1fje_B 90 GR 91 (175)
T ss_dssp CS
T ss_pred Cc
Confidence 64
No 212
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.08 E-value=2.8e-10 Score=109.34 Aligned_cols=78 Identities=24% Similarity=0.416 Sum_probs=68.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHC-C-CCC---CCeEEEEEe
Q 012564 299 GHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQAS-P-ITI---GGQEAFVEK 372 (460)
Q Consensus 299 ~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~-~-~~i---~gr~i~V~~ 372 (460)
.++|||+|||..+++++|+++|++||.|..+.|..+... .+|||||+|.+.++|.+||..+ + ..+ .++.|.|++
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~ 175 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEP 175 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEE
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEee
Confidence 578999999999999999999999999999999888543 4899999999999999999998 4 333 389999999
Q ss_pred cccC
Q 012564 373 KKKT 376 (460)
Q Consensus 373 ~~~~ 376 (460)
+.+.
T Consensus 176 ~~~~ 179 (261)
T 3sde_A 176 MEQF 179 (261)
T ss_dssp CCCE
T ss_pred cccc
Confidence 8865
No 213
>1of5_B MTR2, YKL186C, mRNA transport regulator MTR2; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2
Probab=99.08 E-value=6.3e-10 Score=97.44 Aligned_cols=100 Identities=11% Similarity=0.047 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHhccCc-----chhcccccCCceEEeeCCCCcceeeccHHHHHHHHh-cCCCCcceEEEeeeeeee
Q 012564 11 AQVVGNAFVEQYYHILHSTP-----ELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKIL-SLDYKNYKAEIKTADAQN 84 (460)
Q Consensus 11 ~~~vg~~Fv~~YY~~l~~~p-----~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~-~l~~~~~~~~i~s~d~q~ 84 (460)
-.+.+..||++||..|+..+ ..|..|+...+.++++|. .+-+-.+..+.+. .++.. +|+|+++|||-
T Consensus 15 ~~~aae~FVk~~y~aLd~~r~~~l~~~lssF~p~~~~Ii~NG~-----p~a~p~~fqeiw~~Q~p~T--~hel~S~D~HV 87 (184)
T 1of5_B 15 QAQITATFTKKILAHLDDPDSNKLAQFVQLFNPNNCRIIFNAT-----PFAQATVFLQMWQNQVVQT--QHALTGVDYHA 87 (184)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCC-CHHHHTTBCSS-CCEEETTE-----EESCHHHHHHHHHHHSCCC--EEEEEEEEEEE
T ss_pred chhHHHHHHHHHHHHhcccccchhhhhhhhcCCCCceEEECCe-----EcCCHHHHHHHHHhcCCCc--eEEEEeEEEEE
Confidence 45689999999999999988 889999888889999997 7778888888888 78855 99999999999
Q ss_pred eC-CCcEEEEEEEEEEcCCCCcccEEEeeeeeec
Q 012564 85 SH-KEGVTVLVTGCLTGKDNLRRKFAQSFFLAPQ 117 (460)
Q Consensus 85 s~-~~gili~V~G~~~~~~~~~~~F~q~F~L~~~ 117 (460)
.. .++|||+|.|.|..++...-+|.|+|+|.+.
T Consensus 88 Ingsgsivv~VsgkVRFdEsgrd~fgEtfvLvpn 121 (184)
T 1of5_B 88 IPGSGTLICNVNCKVRFDESGRDKMGQDATVPIQ 121 (184)
T ss_dssp ETTTTEEEEEEEEEEECC----------------
T ss_pred ECCCCeEEEEEEEEEEECCCCCCCCCCeEEECCC
Confidence 85 3579999999999976554699999999976
No 214
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.04 E-value=2.2e-10 Score=94.74 Aligned_cols=78 Identities=22% Similarity=0.248 Sum_probs=66.3
Q ss_pred CCcEEEEcCC--CCCCC--------HHHHHHHhhcCCCeeEEEEEEeCCC----CceEEEEEEcCHHHHHHHHHHC-CCC
Q 012564 298 EGHSIYIRNL--PDTMT--------VASLEVEFKKFGPVKQGGIQVRHNK----GYCFGFVEFQSSSSVDNAIQAS-PIT 362 (460)
Q Consensus 298 ~~~~lfV~nL--p~~vt--------e~~L~~~F~~~G~v~~~~i~~~~~~----g~g~aFV~F~~~e~a~~Al~~~-~~~ 362 (460)
+.+.|.|.|+ +.++. +++|+++|++||.|.++.|..+..+ ++||+||+|.+.++|.+|+..| +..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4688999998 33333 3689999999999999988776542 4899999999999999999999 999
Q ss_pred CCCeEEEEEeccc
Q 012564 363 IGGQEAFVEKKKK 375 (460)
Q Consensus 363 i~gr~i~V~~~~~ 375 (460)
++||.|+|++...
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999998764
No 215
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.04 E-value=6.3e-11 Score=97.84 Aligned_cols=70 Identities=14% Similarity=0.202 Sum_probs=59.2
Q ss_pred EcCCCCCCCHHHHHHHh------------hcCCCeeEEEEEEeCCC-CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEE
Q 012564 304 IRNLPDTMTVASLEVEF------------KKFGPVKQGGIQVRHNK-GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAF 369 (460)
Q Consensus 304 V~nLp~~vte~~L~~~F------------~~~G~v~~~~i~~~~~~-g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~ 369 (460)
+.||++.+++++|+++| ++||.|.++.|..+... .+|||||+|.+.++|++|+..+ +..|+||.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 55677777887777666 99999999988765543 5999999999999999999998 9999999999
Q ss_pred EEec
Q 012564 370 VEKK 373 (460)
Q Consensus 370 V~~~ 373 (460)
|+++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9875
No 216
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.02 E-value=4.7e-10 Score=111.62 Aligned_cols=75 Identities=15% Similarity=0.183 Sum_probs=62.4
Q ss_pred CCCCcEEEEcC--CCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCC---CCe--E
Q 012564 296 EVEGHSIYIRN--LPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITI---GGQ--E 367 (460)
Q Consensus 296 ~~~~~~lfV~n--Lp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i---~gr--~ 367 (460)
..+..+|||+| |++.+|+++|+++|++||.|+.+.| ..+++||||+|.+.++|++||+.| +.++ .|+ .
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~----~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLM----PPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEEC----CTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEE----eCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 44578999999 5789999999999999999988655 236899999999999999999999 7766 345 5
Q ss_pred EEEEecc
Q 012564 368 AFVEKKK 374 (460)
Q Consensus 368 i~V~~~~ 374 (460)
|+|.+..
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 6777663
No 217
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.99 E-value=7.6e-10 Score=93.40 Aligned_cols=78 Identities=27% Similarity=0.279 Sum_probs=67.0
Q ss_pred CCcEEEEcCCCC--CC---CHHHHHHHhhcCCCeeEEEEEEeCCC------CceEEEEEEcCHHHHHHHHHHC-CCCCCC
Q 012564 298 EGHSIYIRNLPD--TM---TVASLEVEFKKFGPVKQGGIQVRHNK------GYCFGFVEFQSSSSVDNAIQAS-PITIGG 365 (460)
Q Consensus 298 ~~~~lfV~nLp~--~v---te~~L~~~F~~~G~v~~~~i~~~~~~------g~g~aFV~F~~~e~a~~Al~~~-~~~i~g 365 (460)
..+.|+|.|+-. ++ -+++|+++|++||.|.++.|..+..+ ++||+||+|.+.++|.+|+..| +..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 568999999832 22 36899999999999999999887542 3799999999999999999999 999999
Q ss_pred eEEEEEeccc
Q 012564 366 QEAFVEKKKK 375 (460)
Q Consensus 366 r~i~V~~~~~ 375 (460)
|.|+|++...
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998764
No 218
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=2.8e-09 Score=89.82 Aligned_cols=76 Identities=17% Similarity=0.185 Sum_probs=66.3
Q ss_pred CCCCCcEEEEcCCCCC-CCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcC-HHHHHHHHHHC---CCCCCCeEEE
Q 012564 295 EEVEGHSIYIRNLPDT-MTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQS-SSSVDNAIQAS---PITIGGQEAF 369 (460)
Q Consensus 295 ~~~~~~~lfV~nLp~~-vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~-~e~a~~Al~~~---~~~i~gr~i~ 369 (460)
.-+.++.|||+||+.+ +++++|+++|++||.|++|.+ ..+...|||.|.+ ..+|..|+..+ +.+|++..++
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~----~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDF----VRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEEC----CTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEE----ecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 4567899999999999 999999999999999999887 4444579999999 88999999987 8899999998
Q ss_pred EEecc
Q 012564 370 VEKKK 374 (460)
Q Consensus 370 V~~~~ 374 (460)
++.-.
T Consensus 90 ~evL~ 94 (121)
T 1owx_A 90 WEVLE 94 (121)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 87543
No 219
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.78 E-value=6.9e-09 Score=86.93 Aligned_cols=76 Identities=16% Similarity=0.049 Sum_probs=61.9
Q ss_pred CCcEEEEcCCCC--CC--------CHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCe
Q 012564 298 EGHSIYIRNLPD--TM--------TVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQ 366 (460)
Q Consensus 298 ~~~~lfV~nLp~--~v--------te~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr 366 (460)
..+.|.+.|+=. +. -+++|+++|++||.|.++.| .++..+||+||+|.+.++|++|++.| |..|+||
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i--~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYV--DKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEE--CTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEE--ecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 356788888722 11 13578999999999998765 34446899999999999999999999 9999999
Q ss_pred EEEEEeccc
Q 012564 367 EAFVEKKKK 375 (460)
Q Consensus 367 ~i~V~~~~~ 375 (460)
.|+|++...
T Consensus 84 ~i~v~~~~~ 92 (114)
T 3s6e_A 84 MITAAYVPL 92 (114)
T ss_dssp ECEEEEECH
T ss_pred EEEEEEEcH
Confidence 999998764
No 220
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.72 E-value=2e-08 Score=79.59 Aligned_cols=73 Identities=16% Similarity=0.158 Sum_probs=59.0
Q ss_pred CCcEEEEcCCCC----CCCH----HHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHCCCCCCCeEEE
Q 012564 298 EGHSIYIRNLPD----TMTV----ASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQASPITIGGQEAF 369 (460)
Q Consensus 298 ~~~~lfV~nLp~----~vte----~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~ 369 (460)
...+|+|.-++. +.-+ .+|.+.|++||.|..++|..++ +||+|.+.++|.+||+..+..|+||.|+
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~------~fVtF~d~~sAlaAi~mnG~~v~Gr~Lk 79 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK------MWVTFLEGSSALNVLSLNGKELLNRTIT 79 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS------EEEEESSHHHHHHGGGGTTCEETTEEEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC------EEEEECChHHHHHHHhcCCeEeCCeEEE
Confidence 456788876652 2323 6799999999999988774433 7999999999999999339999999999
Q ss_pred EEecccC
Q 012564 370 VEKKKKT 376 (460)
Q Consensus 370 V~~~~~~ 376 (460)
|..+++.
T Consensus 80 V~lkt~d 86 (91)
T 2dnr_A 80 IALKSPS 86 (91)
T ss_dssp EEECCCS
T ss_pred EEeCCCC
Confidence 9999864
No 221
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.48 E-value=1.4e-07 Score=75.18 Aligned_cols=73 Identities=12% Similarity=0.168 Sum_probs=58.9
Q ss_pred CCCcEEEEcCCCCC------CCH---HHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHCCCCCCCeE
Q 012564 297 VEGHSIYIRNLPDT------MTV---ASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQASPITIGGQE 367 (460)
Q Consensus 297 ~~~~~lfV~nLp~~------vte---~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~ 367 (460)
++..+|+|.-++.. ..+ .+|.+.|.+||.|..++|..++ +||+|.+.++|.+||+..+..|+||.
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~------~fVtF~d~~sAl~AI~ldG~~v~Gr~ 86 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ------MLVTFADSHSALSVLDVDGMKVKGRA 86 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE------EEEECSCSHHHHHHHHGGGSEETTEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc------EEEEEcChHHHHHHHhcCCeeeCCeE
Confidence 45678999877632 222 5689999999999988774443 89999999999999993399999999
Q ss_pred EEEEeccc
Q 012564 368 AFVEKKKK 375 (460)
Q Consensus 368 i~V~~~~~ 375 (460)
|+|..+.+
T Consensus 87 L~V~~k~~ 94 (95)
T 1ufw_A 87 VKISGPSS 94 (95)
T ss_dssp EEEECCCC
T ss_pred EEEeccCC
Confidence 99998764
No 222
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.17 E-value=2.8e-06 Score=79.07 Aligned_cols=64 Identities=27% Similarity=0.217 Sum_probs=56.4
Q ss_pred CHHHHHHHhhcCCCeeEEEEEEeCCC------CceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEeccc
Q 012564 312 TVASLEVEFKKFGPVKQGGIQVRHNK------GYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKKK 375 (460)
Q Consensus 312 te~~L~~~F~~~G~v~~~~i~~~~~~------g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~~ 375 (460)
.+++|++.|++||.|..+.|..+... ++||+||+|.+.++|++|+..| |..++||.|.+++...
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 56889999999999999988755432 4899999999999999999999 9999999999998753
No 223
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.81 E-value=3.5e-05 Score=62.64 Aligned_cols=72 Identities=8% Similarity=-0.024 Sum_probs=60.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcC-----CCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEE
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKF-----GPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVE 371 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~-----G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~ 371 (460)
..++|-+-|||..+++..|+.++..+ |.|+.+.+ ..+- +-|+|+|.+...|-+|.-++ |.+|.||.|++.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L--~pDH--~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILL--VSDF--NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEE--ETTT--TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEE--ecCC--CceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 46788888999999999999999999 99988544 3332 33999999999999888777 999999999986
Q ss_pred ec
Q 012564 372 KK 373 (460)
Q Consensus 372 ~~ 373 (460)
-.
T Consensus 96 Tv 97 (117)
T 2l9w_A 96 TI 97 (117)
T ss_dssp CH
T ss_pred CH
Confidence 43
No 224
>4i4k_A Uncharacterized protein SGCJ; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: CIT PG4 1PE; 1.70A {Streptomyces globisporus}
Probab=97.47 E-value=0.00086 Score=57.72 Aligned_cols=107 Identities=11% Similarity=0.091 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC---CCCcceEEEeeeeeeeeCCCcE
Q 012564 15 GNAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL---DYKNYKAEIKTADAQNSHKEGV 90 (460)
Q Consensus 15 g~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l---~~~~~~~~i~s~d~q~s~~~gi 90 (460)
-..++..||..|+ .+.+.|..+|.++..+...|. ...|.++|.+.+..+ .+.+..+.+...+.....++..
T Consensus 21 i~~l~~~y~~A~~~~D~d~~~~lf~~Da~~~~~g~-----~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~A 95 (143)
T 4i4k_A 21 VAALPARIVAAWADHDADRFADVFAEDGTMILPGL-----FRKGRENIRTHMAAAFAGPYKGTRVIGSPIDARLLGDGIA 95 (143)
T ss_dssp HHTHHHHHHHHHHTTCHHHHHTTEEEEEEEEETTE-----EEESHHHHHHHHHHHHHTTTTTCEEEEEEEEEEEEETTEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHhhcCceEEeCCC-----eecCHHHHHHHHHHHHhhcCCCCeEEeeeEEEEEcCCCEE
Confidence 4678899999998 688999999999999876553 788999999988743 3355556666665554444545
Q ss_pred EEEEEEEEEcCCCC----cccEEEeeeeeecCCcEEEEcc
Q 012564 91 TVLVTGCLTGKDNL----RRKFAQSFFLAPQDNGYFVLND 126 (460)
Q Consensus 91 li~V~G~~~~~~~~----~~~F~q~F~L~~~~~~y~v~nD 126 (460)
++...|.+...+.. .+.+.+|++|...+++|.|...
T Consensus 96 ~v~~~~~~~~~g~~~~~~~~~~~~T~v~~r~~g~WrI~~~ 135 (143)
T 4i4k_A 96 LLITEGGILAPGETEASGDGAVRASWLAVEQDGQWRLAAY 135 (143)
T ss_dssp EEEEEEEEECTTCSSCCGGGEEEEEEEEEEETTEEEEEEE
T ss_pred EEEeccceecCCCCCCCcccceEEEEEEEEECCcEEEEEe
Confidence 55555666555432 3678999999999999998764
No 225
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.13 E-value=0.0031 Score=50.74 Aligned_cols=73 Identities=18% Similarity=0.310 Sum_probs=60.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhc-----CCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHCCCCCCCeEEEEEe
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKK-----FGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQASPITIGGQEAFVEK 372 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~-----~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~~~~i~gr~i~V~~ 372 (460)
..++|.|.|||..+.++.|+-+|++ -|+|..+.. .. +-|+|+|.+.+.+++.|+.-.+.|++..|.|..
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~--~~----~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P 80 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQR--LG----CGGVLTFREPADAERVLAQADHELHGAQLSLRP 80 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEE--ET----TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEE--cC----CcEEEEEcChHHHHHHhcCCcceecCeEEEEEc
Confidence 4689999999999999999999976 257776443 22 458999999999999998879999999999987
Q ss_pred cccC
Q 012564 373 KKKT 376 (460)
Q Consensus 373 ~~~~ 376 (460)
..++
T Consensus 81 ~~~~ 84 (104)
T 2dhx_A 81 APPR 84 (104)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6554
No 226
>3gzr_A Uncharacterized protein with A NTF2-like fold; structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: MSE GOL; 1.40A {Caulobacter vibrioides}
Probab=96.91 E-value=0.013 Score=50.48 Aligned_cols=113 Identities=12% Similarity=0.134 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhc-cCcchhcccccCCceEE-eeCCCCcceeeccHHHHHHHHhcC---CCCcceEEEeeeeeeeeCCCcE
Q 012564 16 NAFVEQYYHILH-STPELVFRFYQDSSVLS-RPDSNGVMTSVTTMEGINQKILSL---DYKNYKAEIKTADAQNSHKEGV 90 (460)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~-~~~~~~~~~~~~g~~~I~~~~~~l---~~~~~~~~i~s~d~q~s~~~gi 90 (460)
..++..|...++ .+.+.|..+|.++..+. ..|. .+.|.++|.+.+..+ .+.+..+.+...+.....++..
T Consensus 9 ~~l~~~~~~A~~~~D~d~~~~lf~~Da~~~~~~G~-----~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~A 83 (146)
T 3gzr_A 9 QALIQAYFTAWNTNAPERFAEIFWPDGSWVNVVGM-----HWRGRDQIVFAHTAFLKTIFKDCKQELVTIEARTIAPGSA 83 (146)
T ss_dssp HHHHHHHHHHHHTTCGGGSGGGEEEEEEEECTTCC-----EEESHHHHHHHHHHHHHTTTTTCCEEEEEEEEEEEETTEE
T ss_pred HHHHHHHHHHHHcCCHHHHHhhccCCeEEEcCCCC-----eeeCHHHHHHHHHHHhhcccCCCEEEEeEEEEEEcCCCEE
Confidence 577899999998 68999999999999876 4554 788999999987642 3444455555555444444444
Q ss_pred EEEEEEEEE---cCCCCc---ccEEEeeeeeecCCcEEEEccEEEEecC
Q 012564 91 TVLVTGCLT---GKDNLR---RKFAQSFFLAPQDNGYFVLNDVFRYVDD 133 (460)
Q Consensus 91 li~V~G~~~---~~~~~~---~~F~q~F~L~~~~~~y~v~nDifr~~~~ 133 (460)
++.+.-.|+ ..+... ..+.+|++|..++++|.|..+--..++.
T Consensus 84 ~v~~~~~l~g~~~~~G~~~~~~~~~~t~v~vr~dg~WrI~a~h~s~v~p 132 (146)
T 3gzr_A 84 LAVVTLIQDAYVTPDGRQMPRAHDRLTLLAVEREGVWRFIHGHNTIVNP 132 (146)
T ss_dssp EEEEEEEECCEECTTCCEECCEEEEEEEEEEEETTEEEEEEEEEEECCT
T ss_pred EEEEEEEecceeCCCCCcCCccCcEEEEEEEEECCEEEEEEEecccCcC
Confidence 454444442 122222 4678999999999999999987766543
No 227
>3cu3_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; 2.00A {Nostoc punctiforme} SCOP: d.17.4.28
Probab=96.84 E-value=0.0058 Score=53.89 Aligned_cols=111 Identities=11% Similarity=0.012 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHhc-cCcchhcccccCCceEEe-eCCCCcceeeccHHHHHHHHhcC---CCCcceEEEeeeeeeeeCCC
Q 012564 14 VGNAFVEQYYHILH-STPELVFRFYQDSSVLSR-PDSNGVMTSVTTMEGINQKILSL---DYKNYKAEIKTADAQNSHKE 88 (460)
Q Consensus 14 vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~-~~~~~~~~~~~g~~~I~~~~~~l---~~~~~~~~i~s~d~q~s~~~ 88 (460)
--..++..|+..++ .+.+.|..+|.++..+.. .+. .+.|.++|.+.+..+ .+....+.+...+.....++
T Consensus 17 aI~~~~~~~~~A~~~~D~d~~~~lfa~Da~~~~~~g~-----~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d 91 (172)
T 3cu3_A 17 AIRAFHRQMIDAWNRGSGEGFAAPFSETADFITFEGT-----HLKGRKEIAAFHQQAFDTVVKGTRLEGEVDFVRFVNSQ 91 (172)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTCC-----EEEHHHHHHHHHHHHHHTTTTTCEEEEEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHhhcCCCeEEEeCCCC-----eEECHHHHHHHHHHHhhccCCCcEEEEEEeEEEEeCCC
Confidence 44678999999998 689999999999998874 343 788999999998753 24444454444444333344
Q ss_pred cEEEEEEEEEEcCCC----CcccEEEeeeeeecCCcEEEEccEEE
Q 012564 89 GVTVLVTGCLTGKDN----LRRKFAQSFFLAPQDNGYFVLNDVFR 129 (460)
Q Consensus 89 gili~V~G~~~~~~~----~~~~F~q~F~L~~~~~~y~v~nDifr 129 (460)
..++.+.+.+...+. ....+..+++|...+++|.|...-..
T Consensus 92 ~A~v~~~~~~~~~g~~~~~~~~~~~~t~v~~r~dG~WrI~~~~~s 136 (172)
T 3cu3_A 92 LALMLVVIRVILPGQTETSASRDSLPLYVVTKGDEGWQIEGLLNT 136 (172)
T ss_dssp EEEEEEEEEEECTTCSSBCGGGCBCCEEEEEEETTEEEEEEEECC
T ss_pred EEEEEEEEEEEeCCCCCcCCccceEEEEEEEEeCCeEEEEEEEcC
Confidence 445555555665543 23556677888888889999886553
No 228
>3hx8_A MLR2180 protein, putative ketosteroid isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE UNL PG4; 1.45A {Mesorhizobium loti}
Probab=96.50 E-value=0.028 Score=46.10 Aligned_cols=114 Identities=18% Similarity=0.113 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC-CCCcceEEEeeeeeeeeCCC
Q 012564 11 AQVVGNAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL-DYKNYKAEIKTADAQNSHKE 88 (460)
Q Consensus 11 ~~~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l-~~~~~~~~i~s~d~q~s~~~ 88 (460)
.++.=...+.+|+..|+ .+.+.|..+|.++..+...+. ..+.|.++|.+.+..+ ......+.+..+...... +
T Consensus 4 ~~~~I~~~~~~~~~a~~~~D~~~~~~l~a~Da~~~~~~~----~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~v~~~g-d 78 (129)
T 3hx8_A 4 AKEAIEAANADFVKAYNSKDAAGVASKYMDDAAAFPPDM----ARVDGRQNIQKLWQGAMDMGISELKLTTLDVQESG-D 78 (129)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTS----CCEESHHHHHHHHHHHHHTTCEEEEEEEEEEEEET-T
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHhhCCCeEEeCCCC----CcccCHHHHHHHHHHHHhCCCceEEEEEEEEEcCC-C
Confidence 44455778999999998 688999999999998854432 2678999999988753 111135666665555333 3
Q ss_pred cEEEEEEEEEEc--CCCCcc--cEEEeeeeeec-CCcEEEEccEEE
Q 012564 89 GVTVLVTGCLTG--KDNLRR--KFAQSFFLAPQ-DNGYFVLNDVFR 129 (460)
Q Consensus 89 gili~V~G~~~~--~~~~~~--~F~q~F~L~~~-~~~y~v~nDifr 129 (460)
..++...-.++. .+.... ...-+.++..+ +++|.|..|.|-
T Consensus 79 ~A~~~~~~~~~~~~~~G~~~~~~g~~~~v~~r~~dG~W~i~~~~~~ 124 (129)
T 3hx8_A 79 FAFESGSFSLKAPGKDSKLVDAAGKYVVVWRKGQDGGWKLYRDIWN 124 (129)
T ss_dssp EEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred EEEEEEEEEEEeeCCCCCeeeeeEEEEEEEEECCCCcEEEEEeecc
Confidence 233332222222 222222 23345566667 789999999983
No 229
>3d9r_A Ketosteroid isomerase-like protein; YP_049581.1, structural joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 2.40A {Pectobacterium atrosepticum} SCOP: d.17.4.27
Probab=96.24 E-value=0.022 Score=47.24 Aligned_cols=113 Identities=18% Similarity=0.183 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcCC--CC-cceEEEeeeeeeeeCCC
Q 012564 13 VVGNAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLD--YK-NYKAEIKTADAQNSHKE 88 (460)
Q Consensus 13 ~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l~--~~-~~~~~i~s~d~q~s~~~ 88 (460)
.--..++..||..|+ .+.+.|..+|.++..+...+. ..+.|.++|.+.+..+- +. ++.+.|..+... .++
T Consensus 11 ~~i~~~~~~~~~a~~~~D~~~~~~l~a~D~v~~~~~~----~~~~G~~ai~~~~~~~~~~~~~~~~~~~~~i~~~--~gd 84 (135)
T 3d9r_A 11 AVIEAAAIAYLTAFNRADIPAVIATYTDDGVLMGPGR----PAAVGKDELAEVYLSVFETVGFDMAYEIKEVVQT--SAD 84 (135)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHTEEEEEEEECTTS----CCEESHHHHHHHHHHHHHHEEEEEEEEEEEEEEE--ETT
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhcCCCEEEECCCC----CcccCHHHHHHHHHHHHhhcCCceeEEEEEEEEe--cCC
Confidence 344678999999998 678899999999998865543 14569999999887642 21 334444444331 233
Q ss_pred cEEEEEE--EEEEcC-CCCc--ccEEEeeeeeec-CCcEEEEccEEEEe
Q 012564 89 GVTVLVT--GCLTGK-DNLR--RKFAQSFFLAPQ-DNGYFVLNDVFRYV 131 (460)
Q Consensus 89 gili~V~--G~~~~~-~~~~--~~F~q~F~L~~~-~~~y~v~nDifr~~ 131 (460)
.+++.+. +.++.. +... ..+.-+++|..+ +++|.|..|+|..+
T Consensus 85 ~a~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~dG~W~i~~~~~s~~ 133 (135)
T 3d9r_A 85 WAFVRSATEGTETNKATGVVTPAAYQELFLLRKSATGSWQTARYCTSKI 133 (135)
T ss_dssp EEEEEEEEEEEEEETTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred EEEEEEEEEEEEecCCCCCceeecccEEEEEEecCCCcEEEEEEeeccc
Confidence 3333322 333322 2222 234556778777 88999999999765
No 230
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.99 E-value=0.016 Score=46.11 Aligned_cols=54 Identities=22% Similarity=0.402 Sum_probs=43.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC
Q 012564 299 GHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS 359 (460)
Q Consensus 299 ~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~ 359 (460)
.+-++| ++|.++...||.++|+.||.|. |.+..++ -|||.|.+++.|..||..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~---I~WidDT---sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ---ISWIDDT---SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCC---CEEEETT---EEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEE---EEEEcCC---eEEEEecCHHHHHHHHHhc
Confidence 355666 9999999999999999999664 4333333 6999999999999998865
No 231
>3b7c_A Uncharacterized protein; NTF-2 like protein, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.70A {Shewanella oneidensis} SCOP: d.17.4.16
Probab=95.98 E-value=0.13 Score=42.26 Aligned_cols=105 Identities=6% Similarity=-0.034 Sum_probs=65.0
Q ss_pred HHHHHHHHHhc-cCcchhcccc--cCCceEEeeCCCCcceeeccHHHHHHHHhcC---CCCcceEEEeeeeeeeeCCCcE
Q 012564 17 AFVEQYYHILH-STPELVFRFY--QDSSVLSRPDSNGVMTSVTTMEGINQKILSL---DYKNYKAEIKTADAQNSHKEGV 90 (460)
Q Consensus 17 ~Fv~~YY~~l~-~~p~~l~~fY--~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l---~~~~~~~~i~s~d~q~s~~~gi 90 (460)
..++.||..++ .+.+.|..+| .++..++..+. ...|.++|.+.+..+ ++....+++.-++.+...++..
T Consensus 9 ~~~~~~~~A~~~~D~~~~~~~y~~~~d~~~~~~~~-----~~~G~~~i~~~~~~~f~~~~~~~~l~~~~~~~~~~~~~~a 83 (122)
T 3b7c_A 9 QLLKGQEEAWNRGDLDAYMQGYWQNEQLMLISNGK-----FRNGWDETLAAYKKNYPDKESLGELKFTIKEIKMLSNYAA 83 (122)
T ss_dssp HHHHHHHHHHHTTCHHHHHTTBCCSTTCEEECSSC-----EEECHHHHHHHHHHHCSSGGGSCEEEEEEEEEEEEETTEE
T ss_pred HHHHHHHHHHHcCCHHHHHHhhcCCCCEEEECCCc-----cccCHHHHHHHHHHhcCChhhcCeeEEEEEEEEEcCCCEE
Confidence 35666666666 7889999999 55655554432 688999999977642 2222456666666665433322
Q ss_pred EEEEEEEEEcCCCCcccEEEeeeeeecCCcEEEEccE
Q 012564 91 TVLVTGCLTGKDNLRRKFAQSFFLAPQDNGYFVLNDV 127 (460)
Q Consensus 91 li~V~G~~~~~~~~~~~F~q~F~L~~~~~~y~v~nDi 127 (460)
++.....+....... ....|++|..++++|.|..+-
T Consensus 84 ~v~~~~~~~~~~~~~-~~r~T~v~~k~~g~W~Iv~~H 119 (122)
T 3b7c_A 84 MVVGRWDLKRLKDTP-TGVFTLLVEKIDDRWVITMDH 119 (122)
T ss_dssp EEEEEEEEECSSCCC-EEEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEEEccCCCC-CcEEEEEEEEeCCCEEEEEEe
Confidence 222233343332222 235788999999999998764
No 232
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.88 E-value=0.013 Score=47.25 Aligned_cols=74 Identities=14% Similarity=0.058 Sum_probs=58.5
Q ss_pred CcEEEEcCCCCCC-C----HHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEe
Q 012564 299 GHSIYIRNLPDTM-T----VASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEK 372 (460)
Q Consensus 299 ~~~lfV~nLp~~v-t----e~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~ 372 (460)
.++|+|.||+.++ . .+.++++|.+|+++..... -+...-..|.|.+.++|.+|-..+ +..++|+.|+|-.
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~----lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YF 80 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQY----FKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYF 80 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEE----ETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEEC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceee----cCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEe
Confidence 3789999998765 2 2578999999999876433 122223689999999999999999 8999999999998
Q ss_pred cccC
Q 012564 373 KKKT 376 (460)
Q Consensus 373 ~~~~ 376 (460)
+.+.
T Consensus 81 gq~~ 84 (104)
T 1wey_A 81 AQTL 84 (104)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 8754
No 233
>3gwr_A Putative calcium/calmodulin-dependent protein KIN II association domain; YP_315894.1; HET: MSE PG4; 2.01A {Thiobacillus denitrificans atcc 25259}
Probab=95.71 E-value=0.088 Score=45.07 Aligned_cols=107 Identities=10% Similarity=0.136 Sum_probs=68.8
Q ss_pred HHHHHHHHhc-cCcchhcccccCCce--EEeeCCCCcceeeccHHHHHHHHhcCC--CCcceEEEeeeeeeeeCCCcEEE
Q 012564 18 FVEQYYHILH-STPELVFRFYQDSSV--LSRPDSNGVMTSVTTMEGINQKILSLD--YKNYKAEIKTADAQNSHKEGVTV 92 (460)
Q Consensus 18 Fv~~YY~~l~-~~p~~l~~fY~~~S~--l~~~~~~~~~~~~~g~~~I~~~~~~l~--~~~~~~~i~s~d~q~s~~~gili 92 (460)
..+.||..|+ .+.+.|..+|.++.. +++.+. . .+.|.++|.+.+..+= .....+++..+...... +..++
T Consensus 13 ~~~af~~A~~~gD~da~~al~a~d~~v~~v~p~g--~--~l~G~~ai~~~w~~~f~~~~~~~i~~~~v~v~~~g-d~A~v 87 (144)
T 3gwr_A 13 AEDAFYAAFEARSLDDMMAVWARDDHVACIHPLA--A--PLNGRAAVAAGWRSMFGAAGRFRLQVKAVHEIRQA-DHVIR 87 (144)
T ss_dssp HHHHHHHHHHHTCHHHHHHHBCSSSCCEEECTTC--C--CEESHHHHHHHHHHHHHHHCCEEEEEEEEEEEECS-SEEEE
T ss_pred HHHHHHHHHHcCCHHHHHhhccCCCCEEEECCCC--C--CcccHHHHHHHHHHHHcCCCcEEEEEEEEEEEecC-CEEEE
Confidence 4667788887 789999999999853 344432 1 6789999999886531 11234444444444332 33455
Q ss_pred EEEEEEEcCC--CCcccEEEeeeeeecCCcEEEEccEEE
Q 012564 93 LVTGCLTGKD--NLRRKFAQSFFLAPQDNGYFVLNDVFR 129 (460)
Q Consensus 93 ~V~G~~~~~~--~~~~~F~q~F~L~~~~~~y~v~nDifr 129 (460)
.+...+.... .....+.-|+++..++++|.|...--.
T Consensus 88 ~~~e~~~~~~~~g~~~~~r~T~V~~r~~g~WrivhhH~S 126 (144)
T 3gwr_A 88 IVDEFLTIGDETAPRPAILATNVYRREADGWRMVLHHAS 126 (144)
T ss_dssp EEEEEEEETTCSSCCCCEEEEEEEEECSSSEEEEEEEEE
T ss_pred EEEEEEEecCCCCceeeEEEEEEEEEECCEEEEEEEecC
Confidence 5555665532 222567788888888889998886553
No 234
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.50 E-value=0.016 Score=46.20 Aligned_cols=53 Identities=23% Similarity=0.406 Sum_probs=43.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC
Q 012564 300 HSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS 359 (460)
Q Consensus 300 ~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~ 359 (460)
+-++| ++|.++...+|.++|+.||.|. |.+..++ -|||.|.+++.|..||..+
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~---I~WidDT---sAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ---ISWIDDT---SAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEE---EEEEETT---EEEEEEEEECHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEE---EEEEcCC---eEEEEecCHHHHHHHHHhc
Confidence 34566 9999999999999999999443 5444444 6999999999999999864
No 235
>3h51_A Putative calcium/calmodulin dependent protein KIN association domain; NP_636218.1; HET: MSE PG4; 1.70A {Xanthomonas campestris PV}
Probab=95.33 E-value=0.37 Score=41.23 Aligned_cols=115 Identities=15% Similarity=0.147 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcCC--CCcceEEEeeeeeeeeCCC
Q 012564 12 QVVGNAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLD--YKNYKAEIKTADAQNSHKE 88 (460)
Q Consensus 12 ~~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l~--~~~~~~~i~s~d~q~s~~~ 88 (460)
++--..++.+|+..|+ .+.+.|..+|.++..+..... + ..+.|.++|.+.+..+- +....+.+..+.. .++
T Consensus 19 ~~~I~~~~~~~~~A~~~~D~~~l~~l~a~Dav~~~~~~-~--~~~~G~~~i~~~~~~~~~~~~~~~i~~~~i~~---~~g 92 (156)
T 3h51_A 19 AREVAALFDTWNAALATGNPHKVADLYAPDGVLLPTVS-N--EVRASREQIENYFEMFLTKKPKGVINYRTVRL---LDD 92 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEECSSC-S--SCBCSHHHHHHHHHHHGGGCCEEEEEEEEEEE---CSS
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHhhcCCCEEEecCCC-C--ccccCHHHHHHHHHHHHhhCCCCcccceEEEE---ecC
Confidence 3344667788888887 888999999999987753111 1 15789999998887541 1222333433332 222
Q ss_pred cEEEEEEEEEEc----CCCCc--ccEEEeeeeeecCCcEEEEccEEEEecC
Q 012564 89 GVTVLVTGCLTG----KDNLR--RKFAQSFFLAPQDNGYFVLNDVFRYVDD 133 (460)
Q Consensus 89 gili~V~G~~~~----~~~~~--~~F~q~F~L~~~~~~y~v~nDifr~~~~ 133 (460)
=+.+|.|.+.. .+... .....|+++...+++|.|.++-+..+..
T Consensus 93 -d~A~~~~~~~~~~~~~~G~~~~~~~r~t~v~~r~dG~WkIv~~H~S~~p~ 142 (156)
T 3h51_A 93 -DSAVDAGVYTFTLTDKNGKKSDVQARYTFVYEKRDGKWLIINHHSSAMPE 142 (156)
T ss_dssp -SEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEECSC
T ss_pred -CeEEEEEEEEEEEEcCCCCeEEEEeEEEEEEEEECCEEEEEEEeecCCCc
Confidence 22334444322 22222 3345677777788999999988866543
No 236
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.29 E-value=0.0091 Score=61.24 Aligned_cols=61 Identities=15% Similarity=0.279 Sum_probs=44.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHCCCCC
Q 012564 299 GHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQASPITI 363 (460)
Q Consensus 299 ~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~~~~i 363 (460)
.++|||. ++..+++.+|.+.|++||.|.+ +..++.+ ..|+.|+|.+.+++++++....+-+
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~--~~~~~~~-g~~~~vef~~~~~~~~~~~~~~~p~ 113 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINN--HFFYESF-GLYAVVEFCQKESIGSLQNGTHTPX 113 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCC--EEEECSS-SEEEEEECC---CCHHHHSSCCCCC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcce--EEEEccC-CeEEEEEeCCHHHHHHHHhccCCCc
Confidence 4899996 7999999999999999999998 4455544 4899999999999998876654333
No 237
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.20 E-value=0.045 Score=45.33 Aligned_cols=71 Identities=11% Similarity=0.196 Sum_probs=56.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHCCCCCCC-eEEEEEec
Q 012564 298 EGHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQASPITIGG-QEAFVEKK 373 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~~~~i~g-r~i~V~~~ 373 (460)
..+.|.|=+.|.. ....|-..|++||.|.+... ..+..+-.|.|.+..+|++||...+..|++ -.|-|...
T Consensus 23 ~~~wVtVFGFp~~-~~~~VL~~F~~~G~Iv~~~~----~~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQA-SASYILLQFAQYGNILKHVM----SNTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGG-GHHHHHHHHHTTSCEEEEEE----CSSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHH-HHHHHHHHHHhhCcEEEecc----CCCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 4577888888877 46788899999999987543 335667899999999999999999988874 56666653
No 238
>2gxf_A Hypothetical protein YYBH; alpha-beta protein., structural genomics, PSI, protein structure initiative; HET: MES; 3.10A {Bacillus subtilis} SCOP: d.17.4.22
Probab=94.91 E-value=0.14 Score=43.12 Aligned_cols=107 Identities=11% Similarity=0.203 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhc-cCcchhcccccCCceEEe-eCCCCcceeeccHHHHHHHHhcCC--C-CcceEEEeeeeeeeeCCCcE
Q 012564 16 NAFVEQYYHILH-STPELVFRFYQDSSVLSR-PDSNGVMTSVTTMEGINQKILSLD--Y-KNYKAEIKTADAQNSHKEGV 90 (460)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~-~~~~~~~~~~~g~~~I~~~~~~l~--~-~~~~~~i~s~d~q~s~~~gi 90 (460)
...+..||..|+ .+.+.|..+|.++..+.. .+. .+.|.++|.+.+..+- | ....+.+..+...... +..
T Consensus 6 ~~l~~~~~~A~~~~D~d~~~~lfa~Dav~~~~~g~-----~~~G~~aI~~~~~~~~~~~~~~~~~~~~~~~v~~~g-d~A 79 (142)
T 2gxf_A 6 KDIISACDLAIQNEDFDTLMNYYSEDAVLVVKPGM-----IARGKEEIKKAFITIANYFNHHIVPTQGKMILLEAG-DTV 79 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHTTSEEEEEEEECSSSC-----EEEHHHHHHHHHHHTTSCCCSSCCCEEEEEEEEEET-TEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHhcCCCEEEEcCCCC-----cccCHHHHHHHHHHHHHhhCCCceEEEEEEEEEEcC-CEE
Confidence 467889999998 688999999999998853 333 7889999999998642 1 2334555555555443 333
Q ss_pred EEEEEEEEEc-CCCCc--ccEEEeeeeeec-CCcEEEEccEE
Q 012564 91 TVLVTGCLTG-KDNLR--RKFAQSFFLAPQ-DNGYFVLNDVF 128 (460)
Q Consensus 91 li~V~G~~~~-~~~~~--~~F~q~F~L~~~-~~~y~v~nDif 128 (460)
++.+...+.. .+..+ ....-++++..+ +++|.|..|..
T Consensus 80 ~~~~~~~~~~~~~G~~~~~~g~~t~v~~r~~dG~Wri~~d~~ 121 (142)
T 2gxf_A 80 LVLSQTLLDSDKKDSEYAMERRATYVFKKNAQGEWLCVIDNS 121 (142)
T ss_dssp EEEEEEECCC---------EEEEEEEEEECTTSCEEEEEEET
T ss_pred EEEEEEEEEECCCCCeEeeeEEEEEEEEECCCCCEEEEEECC
Confidence 3333333332 11111 222346777774 56788766643
No 239
>2ux0_A Calcium-calmodulin dependent protein kinase (CAM II gamma; transferase, oligomerisation DOM serine- threonine kinase, ATP-binding; 2.46A {Homo sapiens} SCOP: d.17.4.7 PDB: 2w2c_A 1hkx_A*
Probab=94.62 E-value=0.39 Score=40.23 Aligned_cols=111 Identities=12% Similarity=0.044 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC-C--CCcceEEEeeeeeeeeCCCcEE
Q 012564 16 NAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL-D--YKNYKAEIKTADAQNSHKEGVT 91 (460)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l-~--~~~~~~~i~s~d~q~s~~~gil 91 (460)
..+..+||..++ .+.+.|..+|.++..+...+..|. .+.|.++|.+.+..+ . .....++|..+..+...+..++
T Consensus 16 ~~l~~~~~~A~~~~D~~~~~~l~a~d~~~~~~~~~g~--~~~G~~~~r~~~~~~~~~~~~~~~~~~~~~~v~~~gd~aav 93 (143)
T 2ux0_A 16 IKITEQLIEAINNGDFEAYTKICDPGLTSFEPEALGN--LVEGMDFHKFYFENLLSKNSKPIHTTILNPHVHVIGEDAAC 93 (143)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHEEEEEEEECGGGTTC--EEEHHHHHHHHHHHTTTTCCSCEEEEEEEEEEEECSTTEEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHhcCCCcEEEeccCCCc--EEEcHHHHHHHHHhhhhcCCCceeEEEeCCEEEEecCcEEE
Confidence 466777888776 899999999999977764432222 678999999888764 2 2244667767666665444333
Q ss_pred EEEEEEEE--cCC-CC--cccEEEeeeeeecCCcEEEEccEEE
Q 012564 92 VLVTGCLT--GKD-NL--RRKFAQSFFLAPQDNGYFVLNDVFR 129 (460)
Q Consensus 92 i~V~G~~~--~~~-~~--~~~F~q~F~L~~~~~~y~v~nDifr 129 (460)
+ ....+. .+. .. ...+.-|+++...+++|.|..+-..
T Consensus 94 ~-~~~~~~~~~~~~g~~~~~~~r~T~v~~k~~g~Wkivh~H~S 135 (143)
T 2ux0_A 94 I-AYIRLTQYIDGQGRPRTSQSEETRVWHRRDGKWLNVHYHCS 135 (143)
T ss_dssp E-EEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred E-EEeEeeeeecCCCCeeeeeEEEEEEEEEECCEEEEEEEeeC
Confidence 2 222222 121 22 2345677788888899999887663
No 240
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=94.28 E-value=0.14 Score=40.31 Aligned_cols=64 Identities=14% Similarity=0.176 Sum_probs=49.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC----CceEEEEEEcCHHHHHHHHHHC-CCCC
Q 012564 300 HSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK----GYCFGFVEFQSSSSVDNAIQAS-PITI 363 (460)
Q Consensus 300 ~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~----g~g~aFV~F~~~e~a~~Al~~~-~~~i 363 (460)
++|-|++||+.+|++++.+.++.+..+......--+.+ ..+-|||.|.+.+++..-.+.. ++.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 57899999999999999999998887765443322222 2567999999999988887776 6655
No 241
>2rcd_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.32A {Pectobacterium atrosepticum SCRI1043} SCOP: d.17.4.18
Probab=93.99 E-value=0.92 Score=37.35 Aligned_cols=109 Identities=11% Similarity=0.078 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHh-ccCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHh-cCCCCcceEEEeeeeeeeeCCCc
Q 012564 12 QVVGNAFVEQYYHIL-HSTPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKIL-SLDYKNYKAEIKTADAQNSHKEG 89 (460)
Q Consensus 12 ~~vg~~Fv~~YY~~l-~~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~-~l~~~~~~~~i~s~d~q~s~~~g 89 (460)
.+|-..|.+ |...| ..+.+.|..+|.++..+...+. +. ...|.++|.+ +. .++-....+.+..+......++.
T Consensus 14 ~ei~~~~~~-y~~A~~~~D~~~l~~lf~~d~~~~~~~~-~~--~~~G~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~d~ 88 (129)
T 2rcd_A 14 ADVTAAFYR-YEKALTGNDVAVLDELFWHDEKTVRYGA-GE--NLYGIEEIRA-FRLARPSAGLDRALRNTVITTYGHDM 88 (129)
T ss_dssp HHHHHHHHH-HHHHHHTTCHHHHHHHBCCSTTCEEEET-TE--EEESHHHHHH-HHHHSCCTTCCCEEEEEEEEEBTTSE
T ss_pred HHHHHHHHH-HHHHHhcCCHHHHHHhccCCCCEEEECC-CC--ccCCHHHHHH-HHHhcCCCCCceEEEEEEEEEecCcE
Confidence 345444443 44544 4899999999999875533321 21 6779999999 54 44422234455555555444432
Q ss_pred EEEEEEEEEEcCCCCcccEEEeeeeeecCCcEEEEccEE
Q 012564 90 VTVLVTGCLTGKDNLRRKFAQSFFLAPQDNGYFVLNDVF 128 (460)
Q Consensus 90 ili~V~G~~~~~~~~~~~F~q~F~L~~~~~~y~v~nDif 128 (460)
.+ ++..+.... ....+.+|+++...+++|.|.+.-.
T Consensus 89 A~--~~~~~~~~~-~~~~g~~t~v~~r~~~gWrIv~~H~ 124 (129)
T 2rcd_A 89 AV--ASTEFTRTG-STKIGRQMQTWVKMPEGWRIVAAHV 124 (129)
T ss_dssp EE--EEEEEECSS-CCSCEEEEEEEEEETTEEEEEEEEE
T ss_pred EE--EEEEEEEcC-CCCceeEEEEEEECCCcEEEEEEec
Confidence 33 334444432 2345677888888999999987644
No 242
>1tp6_A Hypothetical protein PA1314; structural genomics, alpha-beta sandwich, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: d.17.4.12
Probab=93.93 E-value=0.35 Score=40.32 Aligned_cols=108 Identities=10% Similarity=0.148 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhcc--CcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC--CCCcceEEEeeeeeeeeCCCcE
Q 012564 15 GNAFVEQYYHILHS--TPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL--DYKNYKAEIKTADAQNSHKEGV 90 (460)
Q Consensus 15 g~~Fv~~YY~~l~~--~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~i~s~d~q~s~~~gi 90 (460)
...|++.+++-... +-+.|-..|.++.+|..... ...|.+++.+.+..+ .+.+.+++|..+......++.+
T Consensus 12 ~~~~ie~W~~~~~~~~dl~~l~a~~a~d~~mv~p~G-----~~~g~~~~~~~~~~~~g~~pgl~i~i~~l~~~~~~~d~~ 86 (128)
T 1tp6_A 12 AHVAIRDWLAGDSRADALDALMARFAEDFSMVTPHG-----VVLDKTALGELFRSKGGTRPGLRIEIDGESLLASGVDGA 86 (128)
T ss_dssp HHHHHHHHHHTCCCTTHHHHHHTTEEEEEEEECTTS-----CEEEHHHHHHHHHHHTTCSTTCEEEEEEEEEEEEETTEE
T ss_pred HHHHHHHHHcCCCcHhHHHHHHHhcCCCEEEECCCC-----eECCHHHHHHHHHHhhCCCCCeEEEEEEEEEEeecCCEE
Confidence 34566666665544 56788899999999976543 678999999999864 3557788888888877666667
Q ss_pred EEEEEEEEEcCCCCcccEEEeeeeeec-CC--cEEEEccEE
Q 012564 91 TVLVTGCLTGKDNLRRKFAQSFFLAPQ-DN--GYFVLNDVF 128 (460)
Q Consensus 91 li~V~G~~~~~~~~~~~F~q~F~L~~~-~~--~y~v~nDif 128 (460)
+|.-.+.=...+.....++ |.+|..+ ++ .|.++.+.+
T Consensus 87 vv~y~~~~~~~~~~~~rrs-T~v~~~~~~g~~~W~~lHET~ 126 (128)
T 1tp6_A 87 TLAYREIQSDAAGRSERLS-TVVLHRDDEGRLYWRHLQETF 126 (128)
T ss_dssp EEEEEEEEEETTEEEEEEE-EEEEEECTTCCEEEEEEEEEE
T ss_pred EEEEEEEeccCCceeEEEE-EEEEEeCCCCCEEEEEEEEEe
Confidence 6665543333443345667 8888444 55 488887763
No 243
>3f7s_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Pseudomonas putida KT2440}
Probab=93.87 E-value=0.73 Score=38.43 Aligned_cols=113 Identities=6% Similarity=-0.035 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC-C-C-CcceEEEeeeeeeeeCCC
Q 012564 13 VVGNAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL-D-Y-KNYKAEIKTADAQNSHKE 88 (460)
Q Consensus 13 ~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l-~-~-~~~~~~i~s~d~q~s~~~ 88 (460)
+--..++.+||..++ .+.+.|..+|.++.++...+.. ....|.++|.+.+... . + ...+++|..+..+-..+-
T Consensus 8 ~~I~~l~~~~~~A~~~~D~~~~~~l~a~D~v~~~~~~~---~~~~G~~air~~~~~~~~~~~~~~~~~~~~~~v~~~gd~ 84 (142)
T 3f7s_A 8 SEIRQLIERWMQAVRDRDIPGIIAPYADDIVAFDAIQA---LQFKGKSAYTAHWEMCMGMCTGPMVFELAQLTVHAAGDL 84 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECSSSS---SCEESHHHHHHHHHHHHHTCCSCEEEEEEEEEEEEETTE
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHhhcCCCEEEecCCCC---ccccCHHHHHHHHHHHHHhCCCceEEEEeeeEEEEcCCE
Confidence 334677888888887 7889999999998776433321 1346999998876431 1 1 245677777766644332
Q ss_pred cEEEEEEEEEEcC--CCCcccEEEeeeeeecCCcEEEEccEEE
Q 012564 89 GVTVLVTGCLTGK--DNLRRKFAQSFFLAPQDNGYFVLNDVFR 129 (460)
Q Consensus 89 gili~V~G~~~~~--~~~~~~F~q~F~L~~~~~~y~v~nDifr 129 (460)
.++...-.++.. +.....+.-|+++...+++|.|.++-..
T Consensus 85 -A~~~~~~~~~~~~~~g~~~~~r~T~v~~r~~g~W~ivh~H~S 126 (142)
T 3f7s_A 85 -ALAHWLNRCGPGDDESQCGFMRATVGYRRQGGQWQVIHEHWS 126 (142)
T ss_dssp -EEEEEEEEEEESSCGGGCEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred -EEEEEEEEEeeecCCCcceeeEEEEEEEEeCCEEEEEEEeec
Confidence 233222233322 2233345567888888999999887663
No 244
>3duk_A NTF2-like protein of unknown function; structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.20A {Methylobacillus flagellatus KT} SCOP: d.17.4.0
Probab=93.74 E-value=0.77 Score=38.03 Aligned_cols=107 Identities=16% Similarity=0.154 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhc-CCCCcceEEEeeeeeeeeCCCcEEEE
Q 012564 16 NAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILS-LDYKNYKAEIKTADAQNSHKEGVTVL 93 (460)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~-l~~~~~~~~i~s~d~q~s~~~gili~ 93 (460)
.+-|+.|+.-|+ .+.+.|...|++++.|.... +|........++..+.+.+ -+.....++|.+|+... +.-++.
T Consensus 15 ~~~l~~y~~g~~~~D~~~l~~~f~pda~~~~~~-~G~~l~~~~~~e~~~~v~~~~p~~~~~~~I~~I~i~g---d~A~a~ 90 (125)
T 3duk_A 15 TEVLNVYMNAAESGTGEEMSAAFHKDATIFGYV-GDKLAFNGPIKDLYDWHNSNGPAKNVQSRITNIDIVG---TVAHAR 90 (125)
T ss_dssp HHHHHHHHHHHHHCCHHHHGGGEEEEEEEEEEE-TTEEEEEEETHHHHHHHHHHCCCTTCEEEEEEEEEET---TEEEEE
T ss_pred HHHHHHHHHHHHhcCHHHHHHhCCCCcEEEEEc-CCCEEeeCCHHHHHHHHhccCCCCcccceEEEEEEEC---CEEEEE
Confidence 355788999888 78889999999999885433 2331122246666666653 44456788998888753 333333
Q ss_pred EEEEEEcCCCCcccEEEeeeeeecCCcEEEEccEEEE
Q 012564 94 VTGCLTGKDNLRRKFAQSFFLAPQDNGYFVLNDVFRY 130 (460)
Q Consensus 94 V~G~~~~~~~~~~~F~q~F~L~~~~~~y~v~nDifr~ 130 (460)
|. +. .-....|+-.|.|...+++|-|.|=+|++
T Consensus 91 v~--~~--~~~~~~f~D~l~L~k~dg~WkIv~K~~~~ 123 (125)
T 3duk_A 91 VE--AE--NWTNFKFSDLFLLLKLDGKWTIVNKVFHL 123 (125)
T ss_dssp EE--EE--CSSSCCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EE--EE--EcCCCeEEEEEEEEEeCCEEEEEEEEEEe
Confidence 32 22 11236899999999999999999999975
No 245
>3er7_A Uncharacterized NTF2-like protein; YP_001812677.1, NTF2-like protein of unknown function, struc genomics; HET: MSE; 1.50A {Exiguobacterium sibiricum 255-15} SCOP: d.17.4.24
Probab=93.48 E-value=0.069 Score=45.13 Aligned_cols=60 Identities=7% Similarity=0.149 Sum_probs=44.7
Q ss_pred HHHHHHHHHhcc------CcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC--CCCcceEEEeeee
Q 012564 17 AFVEQYYHILHS------TPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL--DYKNYKAEIKTAD 81 (460)
Q Consensus 17 ~Fv~~YY~~l~~------~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~i~s~d 81 (460)
.-|++||.+++. +.+.|..||.++.++...+. ...|.++|.+.+..+ .|.++++.+....
T Consensus 6 ~~v~ry~~~~d~~~~d~~d~~~l~~Lfa~Dav~~~~~~-----~~~G~~ai~~F~~~~~~a~~~~~~~~~~~v 73 (131)
T 3er7_A 6 TTLDRYFDLFDASRTDEKAFDDLISLFSDEITFVLNGQ-----EQHGIDAWKQFVRMVFTANQDIKHMYAGWV 73 (131)
T ss_dssp CHHHHHHHHHHHTTTCHHHHHHHHHTEEEEEEEEETTE-----EEESHHHHHHHHHHHHHHEEEEEEEECCCE
T ss_pred HHHHHHHHHHhhccCCccCHHHHHHHhCCCeEecCCCC-----CcCChHHHHHHHHHHHhhCcCceEEEEEEE
Confidence 358999999973 37889999999999932232 678999999999865 3556666666543
No 246
>3bb9_A Putative orphan protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: d.17.4.16
Probab=93.22 E-value=0.32 Score=41.26 Aligned_cols=107 Identities=9% Similarity=0.081 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHH-HHhcC-C-CCcceEEEeeeeeeeeCCCc
Q 012564 14 VGNAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQ-KILSL-D-YKNYKAEIKTADAQNSHKEG 89 (460)
Q Consensus 14 vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~-~~~~l-~-~~~~~~~i~s~d~q~s~~~g 89 (460)
--...+.+||..|+ .+.+.|..+|.++..+...+. ...|.++|.+ .+... . +....++|..+...-.. +.
T Consensus 31 ~i~~~~~~~~~A~~~~D~~~l~~l~a~Da~~~~~~g-----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~g-d~ 104 (148)
T 3bb9_A 31 AAGNVVKQFHAALQMGNEAIVRQSLAANVQIYEGGK-----VERSLTEYANHHMLADMAYLKGLTITPKEHQITITG-DI 104 (148)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEETTE-----EECSHHHHHHTHHHHHHHHHHTEEEEEEEEEEEEET-TE
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHhhCCCeEEEeCCC-----ccCCHHHHHHHhHHHHHHhccCceEEeeeEEEEEcC-CE
Confidence 34577889999888 899999999999987754443 3779999998 44321 1 12345666666555443 33
Q ss_pred EEEEEEEEEEcC--CCC-cccEEEeeee-eecCCcEEEEcc
Q 012564 90 VTVLVTGCLTGK--DNL-RRKFAQSFFL-APQDNGYFVLND 126 (460)
Q Consensus 90 ili~V~G~~~~~--~~~-~~~F~q~F~L-~~~~~~y~v~nD 126 (460)
.++...-.++.. +.. ...+.-|++| ...+++|.|.+.
T Consensus 105 A~~~~~~~~~~~~~G~~~~~~~r~T~v~~~k~~g~WkIvh~ 145 (148)
T 3bb9_A 105 AISTSISHAQGEYKGKSIDSMTMETLVLIKQADGRWKITHV 145 (148)
T ss_dssp EEEEEEEEEEECCC--CEEEEEEEEEEEEECTTSCEEEEEE
T ss_pred EEEEEEEEEeeeeCCcccccceEEEEEEeEEcCCcEEEEEE
Confidence 333333333322 111 2346668888 888889998764
No 247
>3rob_A Uncharacterized conserved protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.48A {Planctomyces limnophilus}
Probab=93.14 E-value=0.63 Score=39.37 Aligned_cols=107 Identities=8% Similarity=-0.037 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcCC--C-CcceEEEeeeeeeeeCC
Q 012564 12 QVVGNAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLD--Y-KNYKAEIKTADAQNSHK 87 (460)
Q Consensus 12 ~~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l~--~-~~~~~~i~s~d~q~s~~ 87 (460)
+.--...++.|+..++ .+.+.|..||.++..+...+. ...|.++|...+...- + ....++|.. ++-+.+
T Consensus 16 e~aI~~l~~~~~~A~~~gD~~~l~al~a~D~v~~~~g~-----~~~Gr~ai~a~~~~~~~~~~~~~~~~~~~--i~v~GD 88 (139)
T 3rob_A 16 ELAIRTVQYRWLEATRKFDRQVLSSLMTDDVVFLTPGR-----LPFGKEEFLAACEQNDQRVIIEASATFEE--IVIVEP 88 (139)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHTEEEEEEEECTTS-----CCBCHHHHHHHHHHHHHHEEEEEEEEEEE--EEEETT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHccCcEEEECCCC-----CccCHHHHHHHHHHHHHhcCCCCceEEEE--EEEcCC
Confidence 4467888999999888 899999999999999877664 4459999998865321 1 112233333 333322
Q ss_pred CcEEEEEEEEE----EcC-CCCc--ccEEEeeeeee-cCCcEEEEccEE
Q 012564 88 EGVTVLVTGCL----TGK-DNLR--RKFAQSFFLAP-QDNGYFVLNDVF 128 (460)
Q Consensus 88 ~gili~V~G~~----~~~-~~~~--~~F~q~F~L~~-~~~~y~v~nDif 128 (460)
+-++.|.. +.. +... +...-+++|.+ .++.|.|..|+-
T Consensus 89 ---~A~~~~~~~~~~t~~~~g~~~~~~g~~~~v~rK~~dG~W~i~~d~~ 134 (139)
T 3rob_A 89 ---MAYTRTHLHIKVTPRSGGAVRELAGHAMSIFRRSMFGEWQLARDAN 134 (139)
T ss_dssp ---EEEEEEEEEEEEEETTSCCCEEEEEEEEEEEEECTTSCEEEEEEEE
T ss_pred ---eEEEEEEEEEEEecCCCCceeEeeccEEEEEEECCCCcEEEEEEhh
Confidence 22333332 222 3233 23335668877 467899999875
No 248
>3jum_A Phenazine biosynthesis protein A/B; chirality, drug design, medicinal CH inhibitor, biosynthetic protein; HET: AOD; 1.45A {Burkholderia SP} PDB: 3b4o_A* 3b4p_A* 3dzl_A* 3ex9_A 3cnm_A* 3jun_A* 3juo_A* 3jup_A* 3juq_A*
Probab=93.05 E-value=0.33 Score=43.43 Aligned_cols=82 Identities=12% Similarity=0.066 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhccCcchhcccccCCceEEeeCC-CCcceeeccHHHHHHHHhcCC--CCcceEEEeeeeeeeeCCCc-E
Q 012564 15 GNAFVEQYYHILHSTPELVFRFYQDSSVLSRPDS-NGVMTSVTTMEGINQKILSLD--YKNYKAEIKTADAQNSHKEG-V 90 (460)
Q Consensus 15 g~~Fv~~YY~~l~~~p~~l~~fY~~~S~l~~~~~-~~~~~~~~g~~~I~~~~~~l~--~~~~~~~i~s~d~q~s~~~g-i 90 (460)
-.+=|++|+.++.++++.+..||.++..+.+... .|....+.|.++|.+.+..+. |.+ .++..+....+.++. |
T Consensus 43 nr~vV~~yl~~~~~D~~~~~eLfAeDav~e~P~~~~G~P~r~~GReai~~~~~~~~~~~~d--~~~~~~~v~~taDpd~V 120 (185)
T 3jum_A 43 NRKIVEQYMHTRGEARLKRHLLFTEDGVGGLWTTDSGQPIAIRGREKLGEHAVWSLQCFPD--WVWTDIQIFETQDPNWF 120 (185)
T ss_dssp HHHHHHHHHHCCGGGGGGGGGGEEEEEEEEESCCTTSSCEEEESHHHHHHHHHHHHHHSTT--CEEEEEEEECCSSTTEE
T ss_pred HHHHHHHHHHHhccCHHHHHHhCCCCEEEEecCCCCCCCccccCHHHHHHHHHHHHhhCCC--CeeeEEEEEEecCCCEE
Confidence 3566999999999999999999999999977432 344567899999999987542 333 445556665554443 5
Q ss_pred EEEEEEEE
Q 012564 91 TVLVTGCL 98 (460)
Q Consensus 91 li~V~G~~ 98 (460)
++-..|.-
T Consensus 121 vvE~~~~G 128 (185)
T 3jum_A 121 WVECRGEG 128 (185)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 55555554
No 249
>3fka_A Uncharacterized NTF-2 like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.69A {Silicibacter pomeroyi dss-3}
Probab=93.05 E-value=0.68 Score=38.05 Aligned_cols=103 Identities=12% Similarity=0.115 Sum_probs=70.2
Q ss_pred HHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcCC-C--CcceEEEeeeeeeeeCCCcEEE
Q 012564 17 AFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLD-Y--KNYKAEIKTADAQNSHKEGVTV 92 (460)
Q Consensus 17 ~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l~-~--~~~~~~i~s~d~q~s~~~gili 92 (460)
+-|+.|+.-++ .+.+.|.+-|++++.|.... +|.. .....++..+ +..-| . .....+|.+||..- +.-++
T Consensus 13 ~~l~~Y~~g~~~~D~~~l~~~FhpdA~~~~~~-~g~~-~~~~~~~~~~-v~~~p~~~~~~~~~~i~~I~i~g---d~A~a 86 (120)
T 3fka_A 13 ALVETYVMAMTRGDRPALERIFFGKASEVGHY-EGEL-LWNSRDAFIA-MCEDAADAETDPFWAISSVSVQG---DIAML 86 (120)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHEEEEEEEEEEE-TTEE-EEEEHHHHHH-HHHHHCCSSCCCCEEEEEEEEET---TEEEE
T ss_pred HHHHHHHHHHHhcCHHHHHhhCCCCeEEEEec-CCcE-EEcCHHHHHh-hcCCccCCCCCceEEEEEEEEEC---CEEEE
Confidence 44889999998 78899999999999885543 2332 2224455555 44222 1 22356788888753 43444
Q ss_pred EEEEEEEcCCCCcccEEEeeeeeecCCcEEEEccEEEE
Q 012564 93 LVTGCLTGKDNLRRKFAQSFFLAPQDNGYFVLNDVFRY 130 (460)
Q Consensus 93 ~V~G~~~~~~~~~~~F~q~F~L~~~~~~y~v~nDifr~ 130 (460)
.|. +.. ....|+..|.|...+++|-|.|=+|+|
T Consensus 87 ~v~--~~~---~~~~f~D~~~L~k~dg~WkIv~K~~~~ 119 (120)
T 3fka_A 87 HVE--NDW---AGMRFDDFLTVLLHEGSWRIVSKVYRI 119 (120)
T ss_dssp EEE--EEE---TTEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEE--EEc---CCCceEEEEEEEEeCCEEEEEEEEEEc
Confidence 444 222 346799999999999999999999986
No 250
>3soy_A NTF2-like superfamily protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Salmonella enterica subsp}
Probab=92.93 E-value=0.84 Score=38.76 Aligned_cols=114 Identities=12% Similarity=0.124 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHhccCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcCC----CCcceEEEeeee-eeeeC
Q 012564 12 QVVGNAFVEQYYHILHSTPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLD----YKNYKAEIKTAD-AQNSH 86 (460)
Q Consensus 12 ~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l~----~~~~~~~i~s~d-~q~s~ 86 (460)
.+|-..|-+.|--+..++.+.|..+|.++..+++....| ...|.++|.+.+.+-. |....+.+..++ .+-..
T Consensus 10 ~ei~~~~~~~~~Al~~~D~~~l~~l~~~~~~~~~i~~~g---~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~v~g 86 (145)
T 3soy_A 10 QEITEGINRYLYSIDKADPTLGKQLFYVSPETSFIHPRG---HERGWSQIAENFYGTTMGKTFSKRTLKLDAPPAIHVYG 86 (145)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHTTTBCCSSSCEEEETTE---EEESHHHHHHHCCCCCCCCTEEEEEEEESSCCEEEEET
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHhCCCCeEEEcCCC---cccCHHHHHHHHHHhhhhccccccceEEeeeeEEEEcC
Confidence 356555555555555689999999998875444433322 5689999998876532 222344555555 34433
Q ss_pred CCcEEE---EEEEEEEcCCCC-cccEEEeeeeeec-CCcEEEEccEE
Q 012564 87 KEGVTV---LVTGCLTGKDNL-RRKFAQSFFLAPQ-DNGYFVLNDVF 128 (460)
Q Consensus 87 ~~gili---~V~G~~~~~~~~-~~~F~q~F~L~~~-~~~y~v~nDif 128 (460)
+-.+++ .+.+.+..++.+ ...+..|+++... +++|.|..+-.
T Consensus 87 d~A~v~~~~~~~~~~~~~G~~~~~~~r~T~V~~r~~~ggWkIvh~H~ 133 (145)
T 3soy_A 87 NAAVAEFDWHFTAVRRDNGQTQHTTGRESQVWAKIPNTGWRIVHVHY 133 (145)
T ss_dssp TEEEEEEEEEEEEEETTTCCEEEEEEEEEEEEEEETTTEEEEEEEEE
T ss_pred CEEEEEEEEEEEEEEcCCCCeeeeEEEEEEEEEEcCCCCEEEEEEec
Confidence 322222 122333222322 2346677777774 48999988655
No 251
>2owp_A Hypothetical protein BXE_B1374; cystatin-like fold, DUF3225 family protein, structural genom joint center for structural genomics, JCSG; 2.00A {Burkholderia xenovorans} SCOP: d.17.4.18
Probab=92.70 E-value=2.3 Score=35.33 Aligned_cols=114 Identities=13% Similarity=0.010 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHhccCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcCCCCcceEEEeeeeeeeeCCCcEE
Q 012564 12 QVVGNAFVEQYYHILHSTPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLDYKNYKAEIKTADAQNSHKEGVT 91 (460)
Q Consensus 12 ~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~s~d~q~s~~~gil 91 (460)
.+|-..|.+.|--++..+.+.|..+|.++..+++.+. | ....|.++|..+...+.-....+.+..+..+...++.++
T Consensus 11 ~eI~~~~~~y~~Al~~~D~~~L~~lf~~d~~~v~~~~-g--~~l~G~~~I~a~r~~~~~~~~~~~~~~~~i~~~g~d~A~ 87 (129)
T 2owp_A 11 AQVQAAFVEYERALVENDIEAMNALFWHTPETVRYGI-A--EVQHGGEAIRAWRERCEPVPKSRKLHRTVVTTFGTDFAT 87 (129)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHTBCCSTTCEEECS-S--CEEESHHHHHHHHHHSCCCCTTCEEEEEEEEEETTTEEE
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHhhccCCCcEEEeCC-C--CccCCHHHHHHHHHhcCCCCCceeecccEEEEecCCEEE
Confidence 4566666555555555999999999999985433222 1 277899999997665532112445555544443333333
Q ss_pred EEEEEEEEcCCCCcccEEEeeeeeecC--CcEEEEccEEEEe
Q 012564 92 VLVTGCLTGKDNLRRKFAQSFFLAPQD--NGYFVLNDVFRYV 131 (460)
Q Consensus 92 i~V~G~~~~~~~~~~~F~q~F~L~~~~--~~y~v~nDifr~~ 131 (460)
+. ..+...+. ...+-||.++...+ .+|.|...-...+
T Consensus 88 ~~--~~~~~~~~-~~~gr~t~vw~r~~~~~gWrIv~~H~S~~ 126 (129)
T 2owp_A 88 VS--TEFTSDAT-PLLGRQMQTWARLSPADGWKIVAAHVSLI 126 (129)
T ss_dssp EE--EEEEETTE-EEEEEEEEEEEECSTTTCEEEEEEEEEEE
T ss_pred EE--EEEEECCC-CcceEEEEEEEECCCCCCEEEEEeeecCC
Confidence 32 23333332 23445566666676 8998877655443
No 252
>3dm8_A Uncharacterized protein RPA4348; siras, putative isomerase, structural genomics, PSI-2, prote structure initiative; HET: CE9; 1.80A {Rhodopseudomonas palustris} SCOP: d.17.4.20
Probab=92.59 E-value=0.72 Score=38.80 Aligned_cols=97 Identities=10% Similarity=0.025 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCC---cceeeccHHHHHHHHhcCC--CCcceEEEeeeeeeeeCCCc
Q 012564 16 NAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNG---VMTSVTTMEGINQKILSLD--YKNYKAEIKTADAQNSHKEG 89 (460)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~---~~~~~~g~~~I~~~~~~l~--~~~~~~~i~s~d~q~s~~~g 89 (460)
+.||+.||..|+ .+.+.|..+|.++..+...+... ......|.++|.+.+..+. |..+.++|..+-+ .++.
T Consensus 7 ~~~v~~~~~a~~~gD~~~l~~l~a~Dv~~~~~g~~~~~p~~g~~~G~~av~~~~~~~~~~~~~~~~~~~~~~~---~gd~ 83 (143)
T 3dm8_A 7 WRFSRALHRALNDRQTEELATIIDDNIDWAIYGPIDMFPFFGARQGKAAVLEVCRQIADSVRIYRYHRESVML---GIDS 83 (143)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHEEEEEEEEEESCTTTCTTCEEEESHHHHHHHHHHHHHHEEEEEEEEEEEEE---CSSE
T ss_pred HHHHHHHHHHHHCCCHHHHHHhcCCCeEEEecCCCCcCCCCccccCHHHHHHHHHHHHHhcCcceEEEEEEEE---cCCe
Confidence 789999999999 57889999999998876665421 0235789999999988663 3455666665543 2333
Q ss_pred EEEEEEEEEEcC-CCCc--ccEEEeeeee
Q 012564 90 VTVLVTGCLTGK-DNLR--RKFAQSFFLA 115 (460)
Q Consensus 90 ili~V~G~~~~~-~~~~--~~F~q~F~L~ 115 (460)
+++.+....+.. .... ..|+..|.+.
T Consensus 84 v~v~~~~~~~~~~tG~~~~~~~~~~~~v~ 112 (143)
T 3dm8_A 84 AASMVRYSLTAAGTNRPISVRMALFTQFQ 112 (143)
T ss_dssp EEEEEEEEEEETTTCCEEEEEEEEEEEEE
T ss_pred EEEEEEEEEEEeCCCCEEEEEEEEEEEEE
Confidence 443333333222 2222 3677777763
No 253
>2r4i_A Uncharacterized protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE CIT; 1.60A {Cytophaga hutchinsonii atcc 33406} SCOP: d.17.4.15
Probab=92.35 E-value=0.87 Score=36.56 Aligned_cols=104 Identities=12% Similarity=-0.005 Sum_probs=63.7
Q ss_pred HHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcCCCCcceEEEeeeeeeeeCCCcEEEEEE
Q 012564 17 AFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLDYKNYKAEIKTADAQNSHKEGVTVLVT 95 (460)
Q Consensus 17 ~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~s~d~q~s~~~gili~V~ 95 (460)
+..++||..|. .+.+.|..++.++-.+.+.+ | ...+.+++.+.+.+-......+++..+..+...+..+++. .
T Consensus 10 ~l~~~~~~A~~~~D~~~l~~l~~~d~~~~~~~--G---~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~g~~a~~~~-~ 83 (123)
T 2r4i_A 10 DCEKKLLTAIQNNDVESLEVLLHDDLLFIIPS--G---ETVTKETDIAAYSSGKIALRAVVPSDYIIRIIHDTVVVSV-N 83 (123)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHEEEEEEEECTT--S---CEECHHHHHHHHHTTCEEEEEEEEEEEEEEEETTEEEEEE-E
T ss_pred HHHHHHHHHHHhCCHHHHHhhhCcCeEEECCC--C---CCccHHHHHHHHhcCCeEEEEEeecccEEEEECCEEEEEE-E
Confidence 45667777665 78999999999985555443 3 4557788777776543222356677777777665544443 2
Q ss_pred EEEE--cCCCC-cccEEEeeeeeecCCcEEEEcc
Q 012564 96 GCLT--GKDNL-RRKFAQSFFLAPQDNGYFVLND 126 (460)
Q Consensus 96 G~~~--~~~~~-~~~F~q~F~L~~~~~~y~v~nD 126 (460)
-.++ ..+.. ...+-+|.+....+++|-|...
T Consensus 84 ~~~~~~~~g~~~~~~~r~t~vw~r~~g~W~iv~~ 117 (123)
T 2r4i_A 84 IEIKGEYMEHTLDNTFRYLRVWKLFDGNWKVIAG 117 (123)
T ss_dssp EEEEEEETTEEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEECCcceeEEEEEEEEEEEeCCeEEEEEE
Confidence 3332 23322 1234455666677888887654
No 254
>3cnx_A Uncharacterized protein; putative dehydratase, NTF2-like protein, structural genomics center for structural genomics, JCSG; HET: MSE PGE PG6; 2.10A {Streptomyces avermitilis} SCOP: d.17.4.17
Probab=92.31 E-value=1.6 Score=38.44 Aligned_cols=112 Identities=6% Similarity=0.026 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhc-cCcchhcccccCCc-----------------eEEeeCCCCcceeeccHHHHHHHHhcC--CCCcceE
Q 012564 16 NAFVEQYYHILH-STPELVFRFYQDSS-----------------VLSRPDSNGVMTSVTTMEGINQKILSL--DYKNYKA 75 (460)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~S-----------------~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~ 75 (460)
...+..||..|+ .+.+.|..+|.++. ++++.+. ....|.++|.+.+..+ ......+
T Consensus 15 ~~~~~~~~~A~~~gD~~~l~alwa~d~~~~~~~~~~~~~~~~~v~~v~Pg~----~~l~G~~~I~~~~~~~f~~~~~~~~ 90 (170)
T 3cnx_A 15 GLANTAFYEAMERGDFETLSSLWLTPADLGVDEEYHDPADAGVVSCVHPGW----PVLSGRGEVLRSYALIMANTEYIQF 90 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHBCCHHHHTC------CCCTTCCEEECTTC----CEEEHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHhhcCCcccccccccccccccccEEEEcCCC----ccccCHHHHHHHHHHHHccCCeeEE
Confidence 355677888877 78899999999884 3455542 1688999999887643 1212455
Q ss_pred EEeeeeeeeeCCCcEEEEEEEEEEcC--C-------CCc--ccEEEeeeeeecCCcEEEEccEEEEec
Q 012564 76 EIKTADAQNSHKEGVTVLVTGCLTGK--D-------NLR--RKFAQSFFLAPQDNGYFVLNDVFRYVD 132 (460)
Q Consensus 76 ~i~s~d~q~s~~~gili~V~G~~~~~--~-------~~~--~~F~q~F~L~~~~~~y~v~nDifr~~~ 132 (460)
++..+....+.+ ..++.+...+... + .+. +.+.-|+++...+++|.|.+.-...+.
T Consensus 91 ~~~dv~v~~~gD-~A~v~~~~~~~~~~~~~~g~~~~g~~~~~~~raT~Vfrr~~ggWriv~hH~Sp~~ 157 (170)
T 3cnx_A 91 FLTDVHVSVTGD-TALVTCTENILSGGPPPDDSDELGPLVGQLVVATNVFRRTPDGWKLWSHHASPVL 157 (170)
T ss_dssp EEEEEEEEEETT-EEEEEEEEEEEEEC---------CCCEEEEEEEEEEEECCTTCCEEEEEEEEECC
T ss_pred EEEEEEEEEeCC-EEEEEEEEEEeccCCccccccccCccccceEEEEEEEEEECCEEEEEEEecCCCC
Confidence 565666554444 3444455555431 1 121 236678888888889998887665443
No 255
>2rfr_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.16A {Novosphingobium aromaticivorans} SCOP: d.17.4.28
Probab=91.89 E-value=0.61 Score=39.46 Aligned_cols=113 Identities=8% Similarity=0.035 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceee-ccHHHHHHHHhcCC-----CCcceEEEeeeeeeeeC
Q 012564 14 VGNAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSV-TTMEGINQKILSLD-----YKNYKAEIKTADAQNSH 86 (460)
Q Consensus 14 vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~-~g~~~I~~~~~~l~-----~~~~~~~i~s~d~q~s~ 86 (460)
--..|+..|+..|+ .+.+.+..+|.++..+.+.+. .+ .|.++|.+.+..+. +..+.|.|.++...-.
T Consensus 20 ~I~~l~~~y~~a~D~~d~~~~~~lf~~Da~~~~~~g-----~~~~G~~~i~~~~~~~~~~~~~~~~~~h~~~~~~i~~~- 93 (155)
T 2rfr_A 20 EIRELIARYGPLADSGDAEALSELWVEDGEYAVVGF-----ATAKGRAAIAALIDGQTHRALMADGCAHFLGPATVTVE- 93 (155)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEETTS-----CCEESHHHHHHHHHSHHHHHHHHHCEEEEECCCEEEEE-
T ss_pred HHHHHHHHHHHHhcCCCHHHHHhhcCCceEEEcCCC-----ccccCHHHHHHHHHhccccccCCCceeEeCCCeEEEEe-
Confidence 34578999999998 688899999999999876542 44 89999999988652 2235676766554433
Q ss_pred CCcEEEEEEEEEE--cCCCCcccE---EEeeeeeecCCcEEEEccEEEEecC
Q 012564 87 KEGVTVLVTGCLT--GKDNLRRKF---AQSFFLAPQDNGYFVLNDVFRYVDD 133 (460)
Q Consensus 87 ~~gili~V~G~~~--~~~~~~~~F---~q~F~L~~~~~~y~v~nDifr~~~~ 133 (460)
++...+...-.+. ..+. ..-+ ..++.|...+++|.|.+=.+.++..
T Consensus 94 gd~A~~~~~~~~~~~~~~~-~~~~~~g~y~d~~~r~~g~Wri~~r~~~~~~~ 144 (155)
T 2rfr_A 94 GDTATARCHSVVFRCVSGT-FGSHRVSANRWTFRRTPAGWRAVRRENALLDG 144 (155)
T ss_dssp TTEEEEEEEEEEEEEETTE-EEEEEEEEEEEEEEEETTEEEEEEEEEEESSS
T ss_pred CCEEEEEEEEEEEEEcCCC-ceEEEeeeeEEEEEECCCEEEEEEEEEEecCC
Confidence 2323222222221 1221 1111 1345777788899999877777644
No 256
>3fsd_A NTF2-like protein of unknown function in nutrient; YP_427473.1, NTF2-like protein of unknown function in nutrie uptake; HET: UNL; 1.70A {Rhodospirillum rubrum atcc 11170} SCOP: d.17.4.0
Probab=91.84 E-value=0.79 Score=38.08 Aligned_cols=106 Identities=10% Similarity=0.080 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcCCCCcceEEEeeeeeeeeCCCcEEEEE
Q 012564 16 NAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLDYKNYKAEIKTADAQNSHKEGVTVLV 94 (460)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~s~d~q~s~~~gili~V 94 (460)
.+..++|+..|. .+.+.|..+|.++-++.+.+ | ...+.++..+.+.+-...-..+.+.....+...++..++..
T Consensus 17 ~~l~~~~~~A~~~~D~~~l~~L~~~d~~~v~~~--G---~~~~~~~~l~~~~~g~~~~~~~~~~~~~v~~~g~d~Avv~~ 91 (134)
T 3fsd_A 17 AFYEERLRAAMLTGDLKGLETLLADDLAFVDHT--G---CVKTKQTHLEPYRAGLLKLSRLDLSDAVVRAAGEDGRVVVV 91 (134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHEEEEEEEECTT--S---CEECHHHHHHHHHTTCEEEEEEEEEEEEEEESSTTEEEEEE
T ss_pred HHHHHHHHHHHHhCCHHHHHhhcCCCEEEECCC--C---cCccHHHHHHHHHcCCceEEEEEEeccEEEEeCCCEEEEEE
Confidence 455667777555 89999999999987766543 3 33345555556654222222566666777766554444433
Q ss_pred EEEEEc--CCCCc-ccEEEeeeeeecCCc--EEEEcc
Q 012564 95 TGCLTG--KDNLR-RKFAQSFFLAPQDNG--YFVLND 126 (460)
Q Consensus 95 ~G~~~~--~~~~~-~~F~q~F~L~~~~~~--y~v~nD 126 (460)
.-.+.. ++.+. ..+.+|-+....+++ |-|...
T Consensus 92 ~~~~~~~~~g~~~~~~~~~t~vw~k~~g~~gWriv~~ 128 (134)
T 3fsd_A 92 RAVTAGVYDGEAFTETLRFTRIWRRTQGPAGWKLVAG 128 (134)
T ss_dssp EEEEEEEETTEEEEEEEEEEEEEEEETTTTEEEEEEE
T ss_pred EEEEEEEeCCcEEEEEEEEEEEEEECCCCccceEeEe
Confidence 333322 23221 233344444566777 887653
No 257
>3ff0_A Phenazine biosynthesis protein PHZB 2; cystatin-like fold, antibiotic biosynthesis, virulence, STRU genomics; 1.90A {Pseudomonas aeruginosa}
Probab=91.76 E-value=0.48 Score=41.48 Aligned_cols=85 Identities=7% Similarity=-0.024 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhccCcchhcccccCCceE-EeeCCCCcceeeccHHHHHHHHhcCC--CCcceEEEeeeeeeeeCCC-c
Q 012564 14 VGNAFVEQYYHILHSTPELVFRFYQDSSVL-SRPDSNGVMTSVTTMEGINQKILSLD--YKNYKAEIKTADAQNSHKE-G 89 (460)
Q Consensus 14 vg~~Fv~~YY~~l~~~p~~l~~fY~~~S~l-~~~~~~~~~~~~~g~~~I~~~~~~l~--~~~~~~~i~s~d~q~s~~~-g 89 (460)
--.+-|++|+.++.++.+.++.||.++.+. .|.-..|....+.|.++|.+++..+. |. ..++..+....+.+. -
T Consensus 20 ~Nr~vV~~~l~~~~~D~~~~~~LfAeD~v~~~~e~~~G~P~~~~Gre~l~~~~~~~~~~~~--~~~~~~~~i~~t~Dpd~ 97 (163)
T 3ff0_A 20 KNRETVVKYMNTKGQDRLRRHELFVEDGCGGLWTTDTGSPIVIRGKDKLAEHAVWSLKCFP--DWEWYNIKVFETDDPNH 97 (163)
T ss_dssp HHHHHHHHHHTCCGGGGGGGGGGEEEEEEEEESSCSSSSCEEEESHHHHHHHHHHHHHHST--TCEEEEEEEEEBSSTTE
T ss_pred HHHHHHHHHHHHhcCCHHHHHHhcCCcccceeeEECCCCCcceecHHHHHHHHHHHHhhCC--CceeeeEEEEEcCCCCE
Confidence 446779999999999999999999999882 12222345667899999999987542 33 245666666666554 3
Q ss_pred EEEEEEEEEEc
Q 012564 90 VTVLVTGCLTG 100 (460)
Q Consensus 90 ili~V~G~~~~ 100 (460)
|+|-..|.-++
T Consensus 98 vvvE~~~~g~i 108 (163)
T 3ff0_A 98 FWVECDGHGKI 108 (163)
T ss_dssp EEEEEEEEEEE
T ss_pred EEEEEEEEEEE
Confidence 55555554443
No 258
>3blz_A NTF2-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.75A {Shewanella baltica} SCOP: d.17.4.14
Probab=91.36 E-value=4.1 Score=33.33 Aligned_cols=110 Identities=11% Similarity=0.106 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC--CCCcceEEEeeeeeeeeCCCcEE
Q 012564 15 GNAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL--DYKNYKAEIKTADAQNSHKEGVT 91 (460)
Q Consensus 15 g~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~i~s~d~q~s~~~gil 91 (460)
=.+-+..|+.-++ .+.+.|...|++++.+.....+|. .....+++..+.+... +.....+.|.+|+..- +.-+
T Consensus 14 I~~~~~~y~~a~~~~D~~~l~~~f~~da~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~i~g---d~A~ 89 (128)
T 3blz_A 14 IVEVLSKYNEGGKKADSTIMRPAFSSQATIFGVDVDNK-LTGGPIQGLFDVIDNVFHPSPEAKAAIARIDIVG---TAAS 89 (128)
T ss_dssp HHHHHHHHHHHHHHTCHHHHGGGEEEEEEEEEECTTSC-EEEEETHHHHHHHHHTCCCCTTCEEEEEEEEEET---TEEE
T ss_pred HHHHHHHHHHHHHhCCHHHHHHhhCCCcEEEEEeCCCc-EEecCHHHHHHHHHhcCCCCccccCeEEEEEEEC---CEEE
Confidence 3456889999998 688899999999998854331222 1223456666666543 4444566676665542 3333
Q ss_pred EEEEEEEEcCCCCcccEEEeeeeeecCCcEEEEccEEEEec
Q 012564 92 VLVTGCLTGKDNLRRKFAQSFFLAPQDNGYFVLNDVFRYVD 132 (460)
Q Consensus 92 i~V~G~~~~~~~~~~~F~q~F~L~~~~~~y~v~nDifr~~~ 132 (460)
+.|.-. .. ....|...|.|...+++|-|.+-+|....
T Consensus 90 a~~~~~-~~---~~~~~~d~~~l~k~dg~WkI~~~~~~~~~ 126 (128)
T 3blz_A 90 ARIDTD-DI---SGFRFTDFFNLLKVEGKWTVVSKIYHTHP 126 (128)
T ss_dssp EEEEEE-EE---TTEEEEEEEEEEEETTEEEEEEEEEEECC
T ss_pred EEEEEE-Ec---CCCceEEeEEEEEECCEEEEEEEEEEecc
Confidence 333321 11 23468899999999999999999997653
No 259
>3mg1_A OCP, orange carotenoid protein; carotenoid binding protein, echinone, phycobilisome; HET: ECH; 1.65A {Synechocystis SP} PDB: 3mg2_A* 3mg3_A* 1m98_A*
Probab=91.30 E-value=1.2 Score=42.60 Aligned_cols=111 Identities=20% Similarity=0.224 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcCCCCcceEEEeeeeeeeeCCCcEE
Q 012564 13 VVGNAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLDYKNYKAEIKTADAQNSHKEGVT 91 (460)
Q Consensus 13 ~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~s~d~q~s~~~gil 91 (460)
-|-+.=|.+|+..|+ .+-+.+..+|.++..|.=.=. ..+.|.++|..++..-- ++.+.+...--+.+.-+++.-
T Consensus 192 gi~~~tVl~Y~e~lNa~Df~a~aaLFA~Dg~LepPf~----~PIvGreAI~~y~~~ea-q~~~l~P~~g~~ep~e~g~~q 266 (323)
T 3mg1_A 192 GVTNATVLNYMDNLNANDFDTLIELFTSDGALQPPFQ----RPIVGKENVLRFFREEC-QNLKLIPERGVTEPAEDGFTQ 266 (323)
T ss_dssp TBCCHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTS----CCEESHHHHHHHHHHHC-TTCEEEEEEEEEEECGGGCEE
T ss_pred CcchHHHHHHHHHhcccCHHHHHHHccCCCeeCCCCC----CCccCHHHHHHHHHHHh-ccCEEeeccCccccccCCCce
Confidence 355677999999999 788999999999999953322 28889999999998422 246888888888888888899
Q ss_pred EEEEEEEEcCC---CCcccEEEeeeeeecCCcEEEEccEE
Q 012564 92 VLVTGCLTGKD---NLRRKFAQSFFLAPQDNGYFVLNDVF 128 (460)
Q Consensus 92 i~V~G~~~~~~---~~~~~F~q~F~L~~~~~~y~v~nDif 128 (460)
|.|+|.+++.= +....-.=.|.|-++++-|+|.=|.+
T Consensus 267 i~vtGkVqTpwfGv~v~mnVaW~F~lN~~gkI~~v~i~LL 306 (323)
T 3mg1_A 267 IKVTGKVQTPWFGGNVGMNIAWRFLLNPEGKIFFVAIDLL 306 (323)
T ss_dssp EEEEEEEECTTTGGGCCEEEEEEEEECTTSCEEEEEEEEB
T ss_pred EEEEEEEEcccCCccccccceeEEEECCCCcEEEEEehhh
Confidence 99999998743 22235677799989888899887776
No 260
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=91.23 E-value=0.19 Score=43.14 Aligned_cols=31 Identities=3% Similarity=-0.107 Sum_probs=27.1
Q ss_pred EEEEEeCCCCceEEEEEEcCHHHHHHHHHHC
Q 012564 329 GGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS 359 (460)
Q Consensus 329 ~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~ 359 (460)
+.|.++..+.+||+||+|.+.++|++||..+
T Consensus 3 ~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~ 33 (158)
T 2kn4_A 3 YKLILNGKTLKGETTTEAVDAATAEKVFKQY 33 (158)
T ss_dssp EEEEEECSSCEEEEEEECSSHHHHHHHHHHH
T ss_pred EEEEecCccccchhHHHHHHHHhHHHHHHhh
Confidence 5577777777999999999999999999876
No 261
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=91.03 E-value=0.14 Score=43.05 Aligned_cols=76 Identities=16% Similarity=0.257 Sum_probs=53.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeeEE-EEEE---------e-CC-----CCceEEEEEEcCHHHHHHHHHHCCCCC
Q 012564 300 HSIYIRNLPDTMTVASLEVEFKKFGPVKQG-GIQV---------R-HN-----KGYCFGFVEFQSSSSVDNAIQASPITI 363 (460)
Q Consensus 300 ~~lfV~nLp~~vte~~L~~~F~~~G~v~~~-~i~~---------~-~~-----~g~g~aFV~F~~~e~a~~Al~~~~~~i 363 (460)
..|.|=+.|.. ....+-+.|++||.|..- .+.. . .. .+..+-.|+|++..+|++||..+|..|
T Consensus 8 ~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii 86 (132)
T 3p3d_A 8 LAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVF 86 (132)
T ss_dssp CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEE
T ss_pred eEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEe
Confidence 34555577654 456678899999998651 1100 0 00 135567999999999999999999999
Q ss_pred CCeEEEEEecccC
Q 012564 364 GGQEAFVEKKKKT 376 (460)
Q Consensus 364 ~gr~i~V~~~~~~ 376 (460)
+|..|-|....+.
T Consensus 87 ~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 87 NGVLLGVIPYTKD 99 (132)
T ss_dssp TTEECEEEECCHH
T ss_pred CcEEEEEEECCHH
Confidence 9998888876643
No 262
>3b8l_A Uncharacterized protein; putative aromatic ring hydroxylase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.75A {Novosphingobium aromaticivorans} SCOP: d.17.4.28
Probab=90.91 E-value=1.2 Score=38.23 Aligned_cols=118 Identities=11% Similarity=0.153 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHhcc--CcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC--CCCcceEEEeeeeeeeeCCC
Q 012564 13 VVGNAFVEQYYHILHS--TPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL--DYKNYKAEIKTADAQNSHKE 88 (460)
Q Consensus 13 ~vg~~Fv~~YY~~l~~--~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~i~s~d~q~s~~~ 88 (460)
.--..|+..|+..|+. +.+.|..+|.+++.+.+... | ...+.|.++|.+.+... ++..+.+.|.++......++
T Consensus 28 ~~I~~l~~~y~~alD~~~D~d~~~~lfteDa~~~~~~~-g-~~~~~G~~~i~~~~~~~~~~~~~~~h~~~~~~I~~~~gd 105 (163)
T 3b8l_A 28 LAIQDLMIAYAHAVDTVSDIDAVLDVFTEDAVFDLSGI-G-LTPQVGHAGIREFFTNVFANMSHHAHYLTNFAVTGYEGD 105 (163)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHTTEEEEEEEECGGG-T-CCCEEHHHHHHHHHHHHHHHEEEEEEEEEEEEEEEECSS
T ss_pred HHHHHHHHHHHHHHCcCCCHHHHHhhcCCCEEEEecCC-C-CCCccCHHHHHHHHHHhhccCCceEEEecCEEEEEeCCC
Confidence 4456889999999996 78899999999998865421 1 12577999999988753 23344566666655422233
Q ss_pred cEEEEEEEEE--EcCCCCcc--cEEEeeeeeecCCcEEEEccEEEEec
Q 012564 89 GVTVLVTGCL--TGKDNLRR--KFAQSFFLAPQDNGYFVLNDVFRYVD 132 (460)
Q Consensus 89 gili~V~G~~--~~~~~~~~--~F~q~F~L~~~~~~y~v~nDifr~~~ 132 (460)
...+.....+ ...+.... .-.-+++|...+++|.|..-.+.+.-
T Consensus 106 ~A~~~~~~~~~~~~~~g~~~~~~g~y~d~~~r~dg~WrI~~r~~~~~~ 153 (163)
T 3b8l_A 106 TASMRAYVIGMGVGKDGRAVTVNGRYFFEVRRTEKGWKATRYTMDFLM 153 (163)
T ss_dssp EEEEEEEEEEEEEETTSCEEEEEEEEEEEEEEETTEEEEEEEEEEESS
T ss_pred EEEEEEEEEEEEEcCCCCeEEEEEEEEEEEEEeCCEEEEEEEEEEEEe
Confidence 2332222221 11211211 12345667777889999988877653
No 263
>3h3h_A Uncharacterized snoal-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE UNL MES; 1.60A {Burkholderia thailandensis E264}
Probab=90.86 E-value=0.31 Score=39.81 Aligned_cols=65 Identities=11% Similarity=0.149 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhc-cCcchhcccccCCceEEee------CCCCcceeeccHHHHHHHHhcC--CCCcceEEEeee
Q 012564 14 VGNAFVEQYYHILH-STPELVFRFYQDSSVLSRP------DSNGVMTSVTTMEGINQKILSL--DYKNYKAEIKTA 80 (460)
Q Consensus 14 vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~------~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~i~s~ 80 (460)
-...+++.||..++ .+.+.|..+|.++..+.-. +.. ...+.|.++|.+.+..+ .|.+++++|..+
T Consensus 9 ~~~~~~~~~~~a~n~~D~~~l~~l~a~D~v~~~p~~~~~~g~~--~~~~~G~~ai~~~~~~~~~~~~~~~~~~~~~ 82 (122)
T 3h3h_A 9 FAQQFSREWIDAWNAHDLDAILSHYADGFEMSSPMIVQIAGEP--SGRLRGKEQVGAYWREALRMIPDLHFEWIAT 82 (122)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECHHHHHHHC-C--CCEEEHHHHHHHHHHHHHHHCTTCCCEEEEE
T ss_pred HHHHHHHHHHHHHhccCHHHHHHhcCCCEEEECCCcccccCCC--CCcEEcHHHHHHHHHHHHHHCCCcEEEEEEE
Confidence 35689999999998 6889999999999998644 100 01788999999998753 244667777654
No 264
>3dxo_A Uncharacterized snoal-like protein; putative isomerase of the snoal-like family; HET: MSE PGE; 2.70A {Agrobacterium tumefaciens str} SCOP: d.17.4.19
Probab=90.25 E-value=1.1 Score=36.54 Aligned_cols=64 Identities=16% Similarity=0.241 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhccC-----cchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC--CCCcceEEEe-eeeeee
Q 012564 16 NAFVEQYYHILHST-----PELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL--DYKNYKAEIK-TADAQN 84 (460)
Q Consensus 16 ~~Fv~~YY~~l~~~-----p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~i~-s~d~q~ 84 (460)
..+|++|+..++.. .+.|..+|.++..+.-.-. .+.|.++|...|..+ .|.+|++.+. .++.+.
T Consensus 6 ~~~v~ry~~aw~~~d~~~~~~~l~~l~a~D~~~~dP~~-----~~~G~~ai~~~~~~~~~~~~~~~f~~~~~~~~~~ 77 (121)
T 3dxo_A 6 LTIAQTYLAAWNEEDNERRRHLVGQAWAENTRYVDPLM-----QGEGQQGIAAMIEAARQKFPGYRFVLAGTPDGHG 77 (121)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHEEEEEEEECSSC-----EEEHHHHHHHHHHHHHHHSTTCEEEEEEEEEEET
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhcCCCeEEECCCC-----CcCCHHHHHHHHHHHHHHCCCcEEEEccCcceeC
Confidence 46788888887743 2479999999999976654 689999999988754 3568899887 777664
No 265
>1nww_A Limonene-1,2-epoxide hydrolase; HET: MES; 1.20A {Rhodococcus erythropolis} SCOP: d.17.4.8 PDB: 1nu3_A*
Probab=90.03 E-value=2.7 Score=35.02 Aligned_cols=50 Identities=10% Similarity=0.263 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhcc-CcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC
Q 012564 15 GNAFVEQYYHILHS-TPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL 68 (460)
Q Consensus 15 g~~Fv~~YY~~l~~-~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l 68 (460)
-.+.|+.||..++. +.+.|..||.++..+...+. ..+.|.++|.+.+..+
T Consensus 24 ~~~~v~~~~~a~~~~D~~~l~~l~a~D~~~~~~~~----~~~~G~~~i~~~~~~~ 74 (149)
T 1nww_A 24 DEKIVLEFMDALTSNDAAKLIEYFAEDTMYQNMPL----PPAYGRDAVEQTLAGL 74 (149)
T ss_dssp HHHHHHHHHHHGGGCCHHHHHTTBCSSCEEEETTS----CCEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHhCCCEEEEcCCC----CCccCHHHHHHHHHHH
Confidence 35678999998884 77899999999998876542 1578999999998865
No 266
>3ff2_A Uncharacterized cystatin fold protein (YP_497570. NTF2 superfamily; structural genomics; 1.90A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=89.90 E-value=1.6 Score=34.91 Aligned_cols=64 Identities=13% Similarity=0.113 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC--CCCcceEEEeeeee
Q 012564 16 NAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL--DYKNYKAEIKTADA 82 (460)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~i~s~d~ 82 (460)
.+.|+.||..|+ .+.+.+..||.++........ .....|.++|.+.+..+ .|.+.+++|..+-+
T Consensus 5 ~~~v~~~~~a~n~~D~~~~~~~~a~D~v~h~~~~---~~~~~G~~~~~~~~~~~~~~~p~~~~~i~~~~~ 71 (117)
T 3ff2_A 5 LETAKAMIAAYNAQDVDTYVSYMTDDACEANYRG---DVVREGKEGTRSGLAAAFARWPQNHAEIKDAQQ 71 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTEEEEEEEEETTS---CEEECHHHHHHHHHHHHHHHCTTCEEEEEEEEE
T ss_pred HHHHHHHHHHHcccCHHHHHHhcCCcEEEEeCCC---CccccCHHHHHHHHHHHHhhCCCceEEEEEEEE
Confidence 367999999998 578899999998865533211 12578999999888754 13355677765543
No 267
>2chc_A Protein RV3472; hypothetical protein; 1.69A {Mycobacterium tuberculosis} SCOP: d.17.4.25
Probab=89.78 E-value=1.9 Score=37.13 Aligned_cols=112 Identities=8% Similarity=-0.058 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcCC-CCcceEEEeeeeeeeeCCCcEE
Q 012564 14 VGNAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLD-YKNYKAEIKTADAQNSHKEGVT 91 (460)
Q Consensus 14 vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l~-~~~~~~~i~s~d~q~s~~~gil 91 (460)
--..++..|+..|+ .+.+.+..+|.++..+.+.+. ...|.++|.+.+..+- ...+.|.|.++...... +...
T Consensus 15 ~I~~l~~~y~~a~D~~D~~~~~~lf~~Da~~~~~g~-----~~~G~~~i~~~~~~~~~~~~~~h~~~~~~i~~~g-d~A~ 88 (170)
T 2chc_A 15 RIQALCARYCLTINTQDGEGWAGCFTEDGAFEFDGW-----VIRGRPALREYADAHARVVRGRHLTTDLLYEVDG-DVAT 88 (170)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHTTEEEEEEEEETTE-----EEESHHHHHHHHHHHHHHCCCCEEEEEEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHcCCCHHHHHhcccCcEEEEeCCC-----CcCCHHHHHHHHHHhhcccceEEecCCeEEEEeC-CEEE
Confidence 34578999999998 678899999999999877653 6789999999887531 02345666665554332 3222
Q ss_pred EEEEEE--EEcCCCCcc--cEEEeeeeeecCCcEEEEccEEEEe
Q 012564 92 VLVTGC--LTGKDNLRR--KFAQSFFLAPQDNGYFVLNDVFRYV 131 (460)
Q Consensus 92 i~V~G~--~~~~~~~~~--~F~q~F~L~~~~~~y~v~nDifr~~ 131 (460)
+...-. +...+.... .-.-+.+|...+++|.|..-.+.+.
T Consensus 89 ~~~~~~~~~~~~~g~~~~~~g~y~d~~~r~dg~Wri~~r~~~~~ 132 (170)
T 2chc_A 89 GRSASVVTLATAAGYKILGSGEYQDRLIKQDGQWRIAYRRLRND 132 (170)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred EEEEEEEEEEcCCCCEEEEEEEEEEEEEEECCEEEEEEEEEEEe
Confidence 222211 122222211 1123445566778899988777654
No 268
>3f14_A Uncharacterized NTF2-like protein; YP_680363.1, NTF2-like protein of unknown function, structur genomics; HET: MSE TRS PGE; 1.45A {Cytophaga hutchinsonii atcc 33406}
Probab=89.48 E-value=0.67 Score=37.25 Aligned_cols=90 Identities=6% Similarity=-0.023 Sum_probs=58.3
Q ss_pred HHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcCC--CCcceEEEeeeeeeeeCCCcEEEE
Q 012564 17 AFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLD--YKNYKAEIKTADAQNSHKEGVTVL 93 (460)
Q Consensus 17 ~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l~--~~~~~~~i~s~d~q~s~~~gili~ 93 (460)
+.|+.||..|+ .+.+.|..|+.++-.....+. ....|.+++.+.+..+. +.+..++|..+=+. ++ +|.
T Consensus 4 ~~v~~~~~a~~~gD~~~~~~~ladDv~w~~~g~----~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~i~~---Gd--~Vv 74 (112)
T 3f14_A 4 TTHYSIAQHFSSGDFPAVYACFNDIIEWNIIGN----QVVKGKADVIDFCNKMLPEMKGAVLTNDNVIQN---EN--QIV 74 (112)
T ss_dssp HHHHHHHHHHHTTCGGGTGGGEEEEEEEEETTT----EEEESHHHHHHHHHHHHHHHHTSEEEEEEEEEC---SS--EEE
T ss_pred HHHHHHHHHHHcCCHHHHHHhcCCceEEEEcCC----ccEecHHHHHHHHHHHHhhcCCcEEEEEEEEEe---CC--EEE
Confidence 57999999999 466889999998866544443 26789999998887552 22346777764432 23 455
Q ss_pred EEEEEEc--CCCC--cccEEEeeeee
Q 012564 94 VTGCLTG--KDNL--RRKFAQSFFLA 115 (460)
Q Consensus 94 V~G~~~~--~~~~--~~~F~q~F~L~ 115 (460)
|.|.+.. .+.. ...|+..|.+.
T Consensus 75 v~~~~~~~~~~g~~~~~~~~~vf~~~ 100 (112)
T 3f14_A 75 IEGKCRYFDAEGKEAFVSYCDIYRFE 100 (112)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred EEEEEEEEeCCCCEEEEEEEEEEEEe
Confidence 5555542 2222 24677777774
No 269
>3gzb_A Putative snoal-like polyketide cyclase; YP_001182657.1, STRU genomics, joint center for structural genomics, JCSG; HET: MSE; 1.44A {Shewanella putrefaciens} PDB: 3lza_A*
Probab=89.44 E-value=1.1 Score=37.17 Aligned_cols=78 Identities=17% Similarity=0.176 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhcc-CcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC--CCCcceEEEeeeeeeeeCCCcEEE
Q 012564 16 NAFVEQYYHILHS-TPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL--DYKNYKAEIKTADAQNSHKEGVTV 92 (460)
Q Consensus 16 ~~Fv~~YY~~l~~-~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~i~s~d~q~s~~~gili 92 (460)
.+|...|-..|.. +...|.+||..+|.+.-... -...+|...|..+|... ..-...+.|++. ++.|-||
T Consensus 23 qqlA~~Yi~AlT~hDy~~L~~FynrdsVf~D~ta---~~~YtG~r~Ii~Fl~RaH~gvLey~fnieHm-----fnsGsLV 94 (154)
T 3gzb_A 23 QQLAVKYMDALTEHDYKTLITFYNRDSIFFDKTA---NRKYTGGRFIIDFLERAHQGVLEYDFNIEHM-----YNAGSLV 94 (154)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTCCTTCEEEETTT---TEEEESHHHHHHHHHHHTTTCCCCEEEEEEE-----EEETTEE
T ss_pred HHHHHHHHHHHhccCHHHHHHHhCccceeeeecc---CcceeCcHHHHHHHHHHhhhheeeccChhhh-----ccCCcEE
Confidence 4566778888886 99999999999999964432 23889999999999842 111234566554 3345567
Q ss_pred EEEEEEEcC
Q 012564 93 LVTGCLTGK 101 (460)
Q Consensus 93 ~V~G~~~~~ 101 (460)
+.+|..-.+
T Consensus 95 VmiGnY~~k 103 (154)
T 3gzb_A 95 VMIGNYHFK 103 (154)
T ss_dssp EEEEEEEEE
T ss_pred EEEcceeec
Confidence 777875444
No 270
>3a76_A Gamma-hexachlorocyclohexane dehydrochlorinase; barrel fold, lyase, detoxification; HET: SPD; 2.25A {Sphingomonas paucimobilis}
Probab=88.70 E-value=2.3 Score=37.12 Aligned_cols=114 Identities=6% Similarity=-0.134 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHH-hcC--CCCcceEEEeeeeeeeeCCCc
Q 012564 14 VGNAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKI-LSL--DYKNYKAEIKTADAQNSHKEG 89 (460)
Q Consensus 14 vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~-~~l--~~~~~~~~i~s~d~q~s~~~g 89 (460)
--.+|+..|...|+ .+.+.|..+|.++..+.+... ..+.|.++|.+.+ ..+ ++..+.|.|.++......++.
T Consensus 32 ~I~~ll~ry~~alD~~d~d~~~~lfteDa~~~~~~~----g~~~G~~~i~~~~~~~~~~~~~~t~H~i~n~~I~~~g~d~ 107 (176)
T 3a76_A 32 AIQDLYSDKLIAVDKRQEGRLASIWWDDAEWTIEGI----GTYKGPEGALDLANNVLWPMFHECIHYGTNLRLEFVSADK 107 (176)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEEETTT----EEEEHHHHHHHHHHHTHHHHEEEEEEEEEEEEEEESSSSE
T ss_pred HHHHHHHHHHHHhcCCCHHHHHhhccCCeEEEcCCC----ccccCHHHHHHHHHHhhhcccCceEEecCCeEEEEcCCCe
Confidence 44688999999999 677899999999998866431 1578999999999 542 344567777766554332133
Q ss_pred EEEEEEEEEE--cCCCC-cccE--EEeeeeeecCCcEEEEccEEEEe
Q 012564 90 VTVLVTGCLT--GKDNL-RRKF--AQSFFLAPQDNGYFVLNDVFRYV 131 (460)
Q Consensus 90 ili~V~G~~~--~~~~~-~~~F--~q~F~L~~~~~~y~v~nDifr~~ 131 (460)
..+.+...+. ..... ...+ .-+..|...+++|.|..-.+.+.
T Consensus 108 A~~~~~~~~~~~~~~~~~~~~~~gry~d~l~r~dg~WrI~~r~~~~~ 154 (176)
T 3a76_A 108 VNGIGDVLLLGNLVEGNQSILIAAVFTDEYERRDGVWKFSKRNACTN 154 (176)
T ss_dssp EEEEEEEEEEEEETGGGEEEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEEEEEEEEecCCCceEEEEEEEEEEEEEECCEEEEEEEEEEEE
Confidence 3332111221 12111 1111 12344666778899988877664
No 271
>1ohp_A Steroid delta-isomerase; inhibitor; HET: ESR; 1.53A {Pseudomonas testosteroni} SCOP: d.17.4.3 PDB: 1qjg_A* 8cho_A* 1ohs_A* 1ocv_A 1isk_A 3nuv_A* 1ogz_A* 3nhx_A* 3m8c_A* 3nxj_A* 3myt_A* 3mki_A 3mhe_A 1buq_A* 3nbr_A* 3t8u_A 3ov4_A* 3nm2_A
Probab=87.96 E-value=1.6 Score=34.70 Aligned_cols=51 Identities=14% Similarity=0.216 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC
Q 012564 15 GNAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL 68 (460)
Q Consensus 15 g~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l 68 (460)
-...|+.||..++ .+.+.|..+|.++..+..... ...+.|.++|.+.+..+
T Consensus 7 ~~~~v~~~~~a~~~~D~~~~~~l~a~D~~~~~~~~---~~~~~G~~~i~~~~~~~ 58 (125)
T 1ohp_A 7 MTAVVQRYVAALNAGDLDGIVALFADDATVENPVG---SEPRSGTAAIREFYANS 58 (125)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHTTEEEEEEEESSTT---SCCEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHcCCCeEEECCCC---CCCccCHHHHHHHHHHh
Confidence 4678999999988 577899999999988865421 12788999999999865
No 272
>3en8_A Uncharacterized NTF-2 like protein; YP_553245.1, NTF-2 like protein of unknown function, structu genomics; HET: MSE PG4; 1.85A {Burkholderia xenovorans LB400} SCOP: d.17.4.20
Probab=87.61 E-value=4.7 Score=33.07 Aligned_cols=63 Identities=10% Similarity=0.038 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcCCCCcceEEEeee
Q 012564 15 GNAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLDYKNYKAEIKTA 80 (460)
Q Consensus 15 g~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~s~ 80 (460)
-.+.|+.||..|+ .+.+.|..||.++..+.++.. ...+.|.++|.+++..++-....++|..+
T Consensus 7 ~~~~v~~~~~a~~~~D~~~l~~llaeD~v~~~P~~---~~~~~Gr~~~~~~~~~~~~~~~~~~i~~~ 70 (128)
T 3en8_A 7 IREALNAHWQASAAGDFDAEHDIYDDDAICDYPQS---GERILGRMNLQALRSHHPGKPAGFEVRRI 70 (128)
T ss_dssp HHHHHHHHHHHHHHTCHHHHTTTEEEEEEEEETTT---TEEEESHHHHHHHHHHTTCSCSEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhcCCCEEEECCCC---CCEEECHHHHHHHHHHCCCCCcceEEEEE
Confidence 4678999999887 678999999999999987642 12678999999988877632222556554
No 273
>3hk4_A MLR7391 protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, lyase; HET: MSE; 1.96A {Mesorhizobium loti}
Probab=87.50 E-value=3.5 Score=34.55 Aligned_cols=95 Identities=11% Similarity=0.060 Sum_probs=55.6
Q ss_pred HHHHHHHHHhccCc--chhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcCC--CCcceEEEeeeeeeeeCCCcEEE
Q 012564 17 AFVEQYYHILHSTP--ELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLD--YKNYKAEIKTADAQNSHKEGVTV 92 (460)
Q Consensus 17 ~Fv~~YY~~l~~~p--~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l~--~~~~~~~i~s~d~q~s~~~gili 92 (460)
+-|+.||..+.+.. +.|..||.++.++..+.. .......|.++|.+.+..+. +..|.++|..+-+ .++-+++
T Consensus 24 evv~r~~e~~~~gd~~~~l~~lya~D~v~~dp~~-~~~~~~~G~eai~~~~~~~~~~~~~~~~~i~~~~v---~gd~v~v 99 (136)
T 3hk4_A 24 EIAKDFTELLKQGDNAGAAEKYNADDIASYEAME-GPMAVSHGKEALRQKSQWWQENHEVHGGSVEGPYV---NGDQFAL 99 (136)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHEEEEEEEECSSC-STTSEEESHHHHHHHHHHHHHTEEEEEEEEEEEEE---ETTEEEE
T ss_pred HHHHHHHHHHHcCCcHHHHHHHCCCCEEEEcCCC-CCccccCCHHHHHHHHHHHHhcCCeeeeeecceEE---cCCEEEE
Confidence 45677778887664 468999999999876532 11225789999999887542 2233444443222 2344555
Q ss_pred EEEEEEEcC-CCCcccEEEeeeee
Q 012564 93 LVTGCLTGK-DNLRRKFAQSFFLA 115 (460)
Q Consensus 93 ~V~G~~~~~-~~~~~~F~q~F~L~ 115 (460)
.-+...+.. ...+..+...-++.
T Consensus 100 ~~~~~gth~~tG~~i~~~~i~v~r 123 (136)
T 3hk4_A 100 RFKFDVTPKATGERVTMDEVGLYT 123 (136)
T ss_dssp EEEEEEEETTTCCCEEEEEEEEEE
T ss_pred EEEEEEEECCCCcEEEEEEEEEEE
Confidence 555444544 33444454444443
No 274
>3ebt_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; 1.30A {Burkholderia pseudomallei K96243} SCOP: d.17.4.9
Probab=87.24 E-value=4.1 Score=32.93 Aligned_cols=65 Identities=12% Similarity=0.093 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhc-cCcchhcccccCCceEEeeCC---CCcceeeccHHHHHHHHhcCC--CCcceEEEeee
Q 012564 16 NAFVEQYYHILH-STPELVFRFYQDSSVLSRPDS---NGVMTSVTTMEGINQKILSLD--YKNYKAEIKTA 80 (460)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~---~~~~~~~~g~~~I~~~~~~l~--~~~~~~~i~s~ 80 (460)
.+.|++||..++ .+.+.|..+|.++..+...+. ........|.++|.+.+..+. |.+.+++|..+
T Consensus 6 ~~~v~~~~~a~~~~d~~~~~~l~a~D~~~~~~~~~~p~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (132)
T 3ebt_A 6 MQTVRESYEAFHRRDLPGVLAALAPDVRWTHPDGMSPYGLGGTKHGHDEVIAFIRHVPTHIAEMRLAPDEF 76 (132)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTEEEEEEEEECGGGGGGTCCEEEEHHHHHHHHHHHGGGTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhccCHHHHHHhcCCCEEEEeCCCCCCcccCCcCcCHHHHHHHHHHHHhhCCceEEEEeEE
Confidence 356888888888 477899999999988765421 000137789999999988763 34455666554
No 275
>3fh1_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=87.16 E-value=5.1 Score=32.53 Aligned_cols=68 Identities=4% Similarity=0.072 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC-CCCcceEEEeee
Q 012564 13 VVGNAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL-DYKNYKAEIKTA 80 (460)
Q Consensus 13 ~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l-~~~~~~~~i~s~ 80 (460)
+-..+.|+.||..++ .+.+.|..||.++..+...+....-..+.|.++|.+.+..+ .|.+++++|..+
T Consensus 17 ~~~~~~v~~~~~a~~~~D~~~l~~l~a~D~v~~~p~~~~~g~~~~G~~~i~~~~~~~~~~~~~~~~i~~~ 86 (129)
T 3fh1_A 17 EQTAEIMRRFNDVFQLHDPAALPELIAEECVIENTVPAPDGARHAGRQACVQLWSAIATQPGTRFDLEET 86 (129)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHEEEEEEEECSCSTTTCCEEESHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHhcCCCEEEECCCCCCCCCcccCHHHHHHHHHHHhcCCCceEEEeEE
Confidence 445788999999887 67899999999999887653111112568999999988752 244566777654
No 276
>2gex_A SNOL; alpha+beta barrel, oxidoreductase; 2.50A {Streptomyces nogalater} SCOP: d.17.4.9
Probab=86.77 E-value=7 Score=32.69 Aligned_cols=63 Identities=6% Similarity=0.080 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC--CCCcceEEEeeeee
Q 012564 15 GNAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL--DYKNYKAEIKTADA 82 (460)
Q Consensus 15 g~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~i~s~d~ 82 (460)
....|++||..++ .+.+.|..||.++..+..... ...|.++|.+.+..+ .|.+.+++|..+-+
T Consensus 6 ~~~~v~~~~~a~~~~d~~~~~~~~a~D~v~~~~~~-----~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~ 71 (152)
T 2gex_A 6 NKERCLEMVAAWNRWDVSGVVAHWAPDVVHYDDED-----KPVSAEEVVRRMNSAVEAFPDLRLDVRSIVG 71 (152)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTS-----CEECHHHHHHHHHHHHHHCTTCEEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHcCCCeEEeCCCC-----CCCCHHHHHHHHHHHHHhCCCcEEEEEEEEE
Confidence 4577899999887 466899999999987754322 677999999888754 24467788776543
No 277
>4h3u_A Hypothetical protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.15A {Catenulispora acidiphila}
Probab=86.57 E-value=4.4 Score=34.34 Aligned_cols=92 Identities=15% Similarity=0.138 Sum_probs=57.5
Q ss_pred HHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC--CCCcceEEEeeeeeeeeCCCcEEEE
Q 012564 17 AFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL--DYKNYKAEIKTADAQNSHKEGVTVL 93 (460)
Q Consensus 17 ~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~i~s~d~q~s~~~gili~ 93 (460)
+.|+.||..++ .+.+.|..||.++..+.-... + ..+.|.++|.+.+..+ .|.+++++|..+-+. ++.+++.
T Consensus 29 eiv~~y~~A~n~~D~d~~~~l~a~D~v~~d~~~-g--~~~~Greai~~~~~~~~~~~~d~~~~v~~~~~~---gd~v~~~ 102 (158)
T 4h3u_A 29 EIVTAWAAAWTGTNPNALGTLFAADGTYVDHAI-G--ATMTGREQISGWKARTDAMIENVHVTITKAYRA---GDHVTIE 102 (158)
T ss_dssp HHHHHHHHHHHSSCHHHHHTTEEEEEEEEETTT-T--EEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEE---TTEEEEE
T ss_pred HHHHHHHHHHHcCCHHHHHHHhcccceEeccCC-C--ceEecchhhhhhhhhhhccCCccceeEeEEeec---CceEEEE
Confidence 46889999988 689999999999998763321 1 2678999999998865 244556666554332 3334433
Q ss_pred E--EEEEEcCCCC-cccEEEeeee
Q 012564 94 V--TGCLTGKDNL-RRKFAQSFFL 114 (460)
Q Consensus 94 V--~G~~~~~~~~-~~~F~q~F~L 114 (460)
. +|.....+.. ...++..|.|
T Consensus 103 ~~~~gt~~~tG~~~~~~~~~v~~~ 126 (158)
T 4h3u_A 103 AVYGGHIKGAPTPFAVPMATLLRT 126 (158)
T ss_dssp EEEEEEETTSSSCEEEEEEEEEEE
T ss_pred EEEEEEecCccCcceeeeEEEEEE
Confidence 2 3333222221 2345666666
No 278
>3i0y_A Putative polyketide cyclase; cystatin-like fold, structural genomics, joint center for ST genomics, JCSG, protein structure initiative; HET: MSE UNL; 1.50A {Xanthomonas campestris PV}
Probab=86.48 E-value=4.8 Score=32.89 Aligned_cols=51 Identities=10% Similarity=0.247 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcCC
Q 012564 15 GNAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLD 69 (460)
Q Consensus 15 g~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l~ 69 (460)
..+.|+.||..++ .+.+.|..+|.++..+.... + ....|.++|.+++..+.
T Consensus 10 ~~~~v~~~~~a~~~~D~~~~~~l~a~D~~~~~p~--~--~~~~G~~~~~~~~~~~~ 61 (140)
T 3i0y_A 10 ATGLVQAYYEAFNRGDWDAMLAFLAEDVAHDLNQ--G--PREIGRAAFASFLQRMN 61 (140)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHTEEEEEEEECTT--S--CEEESHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHcCCcEEEEcCC--C--CceEcHHHHHHHHHHHh
Confidence 3578999999997 67899999999998654432 1 27889999999988764
No 279
>3dmc_A NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, unknow function; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.17.4.10
Probab=85.84 E-value=9.4 Score=31.48 Aligned_cols=62 Identities=8% Similarity=-0.056 Sum_probs=49.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC
Q 012564 6 ATPPSAQVVGNAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL 68 (460)
Q Consensus 6 ~~~~~~~~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l 68 (460)
.......++..+.++.||..|. .+.+.|..++.++..+.+++. +......|.++|.+.|..+
T Consensus 5 ~~~~~~~~~~~~~~~~f~~A~~~gD~~~l~~lla~D~v~~~pg~-~~~g~~~G~~~v~~~~~~~ 67 (134)
T 3dmc_A 5 HYSDNTLKVAHQGFEFFTQGLATGEWQKFLDMLTEDFTFWFPMG-EFHGLNVGKERAKEFFTYV 67 (134)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHSCCHHHHTTEEEEEEEEESSG-GGBEEEESHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHcCCCEEEEecCC-CCCccchhHHHHHHHHHHH
Confidence 3455667799999999999987 778999999999999987764 2234678999998887754
No 280
>3f7x_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL; 1.24A {Pseudomonas putida KT2440}
Probab=84.60 E-value=8.1 Score=32.53 Aligned_cols=50 Identities=8% Similarity=0.177 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC
Q 012564 15 GNAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL 68 (460)
Q Consensus 15 g~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l 68 (460)
..+.|+.||..++ .+.+.|..+|.++..+.... + ....|.++|.+.+..+
T Consensus 22 ~~~lv~~~~~a~~~~D~~~l~~l~a~D~v~~~p~--g--~~~~G~e~i~~~~~~~ 72 (151)
T 3f7x_A 22 ATELVNAYYAAFNAGDMPAFLALLSEDVIHDINQ--G--ERQMGKARFAAFMEKM 72 (151)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHTEEEEEEEECTT--S--CEEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhcCCCEEEECCC--C--CCcCCHHHHHHHHHHH
Confidence 4678999999887 57899999999999874322 1 2788999999988865
No 281
>1oh0_A Steroid delta-isomerase; ketosteroid isomerase, KSI, equilenin, PI, LBHB; HET: EQU; 1.1A {Pseudomonas putida} SCOP: d.17.4.3 PDB: 1e3v_A* 1opy_A 1dmq_A 1dmm_A 1ea2_A 3cpo_A 1e3r_A* 1ogx_A 2inx_A 2pzv_A 1c7h_A 1dmn_A 1k41_A 1oho_A* 3fzw_A* 1cqs_A* 1w00_A 1e97_A 1w6y_A* 3ipt_A* ...
Probab=84.05 E-value=2.9 Score=33.77 Aligned_cols=64 Identities=13% Similarity=0.128 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhcc-CcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC--CCCcceEEEeee
Q 012564 14 VGNAFVEQYYHILHS-TPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL--DYKNYKAEIKTA 80 (460)
Q Consensus 14 vg~~Fv~~YY~~l~~-~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~i~s~ 80 (460)
--...|+.||..++. +.+.|..+|.++..+..... ...+.|.++|.+.+..+ .+.+++++|..+
T Consensus 8 ~~~~~v~~~~~a~~~~D~~~l~~l~a~D~~~~~p~~---~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~ 74 (131)
T 1oh0_A 8 EVQGLMARYIELVDVGDIEAIVQMYADDATVEDPFG---QPPIHGREQIAAFYRQGLGGGKVRACLTGPV 74 (131)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEESSTT---SCCEEHHHHHHHHHHHHHSSSCCEEEESSCC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHcCCCEEEEcCCC---CCCcccHHHHHHHHHHHhhccceeEeecceE
Confidence 346789999999984 78899999999998876432 12678999999988765 233444444443
No 282
>3g8z_A Protein of unknown function with cystatin-like FO; NP_639274.1, snoal-like polyketide cyclase; HET: MSE; 1.90A {Xanthomonas campestris PV}
Probab=83.87 E-value=3.6 Score=34.58 Aligned_cols=55 Identities=5% Similarity=0.077 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC
Q 012564 14 VGNAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL 68 (460)
Q Consensus 14 vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l 68 (460)
--.+.|+.||..|+ .+.+.|..||.++..+...+.......+.|.++|.+.+..+
T Consensus 21 ~n~~~v~~~~~a~~~gD~~~l~~l~a~D~v~~~p~~~~~~g~~~G~~~v~~~~~~~ 76 (148)
T 3g8z_A 21 NTIDIAKSYITAIQTGDHATLGSIISPDVIWHQPGNHQFSGTHRGMAVVGPMLGKM 76 (148)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEECSSSTTCEEEESHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCCHHHHHHHcCCCEEEEcCCCCCCCceEcCHHHHHHHHHHH
Confidence 34567888888887 57888999999999887765311123568999999988754
No 283
>1sjw_A Nogalonic acid methyl ester cyclase; anthracyclines, nogalamycin, snoal, aldol condensation, LYAS structural genomics; HET: NGV; 1.35A {Streptomyces nogalater} SCOP: d.17.4.9
Probab=83.84 E-value=4.4 Score=33.40 Aligned_cols=64 Identities=8% Similarity=0.021 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC--CCC-cceEEEeeeee
Q 012564 16 NAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL--DYK-NYKAEIKTADA 82 (460)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~-~~~~~i~s~d~ 82 (460)
.+.|++||..++ .+.+.|..||.++..+..... + ....|.++|.+.+..+ .|. +++++|..+-+
T Consensus 5 ~~~v~~~~~a~~~~d~~~~~~~~a~d~~~~~~~~-~--~~~~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 72 (144)
T 1sjw_A 5 TEIVRRMVSAFNTGRTDDVDEYIHPDYLNPATLE-H--GIHTGPKAFAQLVGWVRATFSEEARLEEVRIEE 72 (144)
T ss_dssp HHHHHHHHHHHHHCCCTTGGGTEEEEEECGGGGG-G--TCCSHHHHHHHHHHHHHHHHCTTCEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCHHHHHHHcCcCeEEccCCC-C--CCCCCHHHHHHHHHHHHHhCCCCcEEEEEEEEE
Confidence 567899999887 577899999999876543322 0 0237999999888765 244 66788776544
No 284
>3k0z_A Putative polyketide cyclase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS lipoprotein; HET: NHE; 1.91A {Bacillus cereus}
Probab=83.66 E-value=9.6 Score=32.36 Aligned_cols=64 Identities=14% Similarity=0.120 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC--CCCcceEEEeeeee
Q 012564 15 GNAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL--DYKNYKAEIKTADA 82 (460)
Q Consensus 15 g~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~i~s~d~ 82 (460)
-.+.|+.||..++ .+.+.|..||.++..+..... | ...|.++|.+.+..+ .|.+++++|..+-+
T Consensus 36 n~~~v~~~~~a~~~~d~~~l~~~~a~D~v~~~p~~-g---~~~G~e~~~~~~~~~~~~~pd~~~~i~~~~~ 102 (159)
T 3k0z_A 36 MVHAAQRFYAFWDTGKEELIPQTVTENFFDHTLPK-G---RPQGTEGLKFAAQNFRKIVPNIHCEIEDLLV 102 (159)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHEEEEEEESSCCT-T---CCSSHHHHHHHHHHHHTTCCSEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHcCCCeEEecCCC-C---CCCCHHHHHHHHHHHHHhCCCcEEEEEEEEE
Confidence 4678999999998 478899999999877654321 1 567999999888754 45577777776543
No 285
>2gey_A ACLR protein; alpha+beta barrel, oxidoreductase; HET: PG4; 1.80A {Streptomyces galilaeus} SCOP: d.17.4.9
Probab=83.36 E-value=11 Score=31.79 Aligned_cols=62 Identities=10% Similarity=0.082 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC--CCCcceEEEeeeee
Q 012564 15 GNAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL--DYKNYKAEIKTADA 82 (460)
Q Consensus 15 g~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~i~s~d~ 82 (460)
-.+.|+.||..++ .+.+.|..||.++..+...+ ...|.++|.+.+..+ .|.+++++|..+-+
T Consensus 6 ~~~~v~~~~~a~~~~D~~~~~~~~a~D~v~~~p~------~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~ 70 (158)
T 2gey_A 6 RKALCLEMVAAWNRWDLSGIIKHWSPDIVHYSED------NEVSSADMVKLMEGGLKAFPDLQLEVKSIMA 70 (158)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHTTEEEEEEEEETT------EEECHHHHHHHHHHHHHHSTTCEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHcCCCeEEeCCC------CCCCHHHHHHHHHHHHHhCCCcEEEEEEEEE
Confidence 4678899999887 47789999999998776532 678999999888754 34567788876543
No 286
>3ehc_A Snoal-like polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.12A {Agrobacterium tumefaciens str}
Probab=82.97 E-value=6 Score=31.97 Aligned_cols=59 Identities=14% Similarity=0.130 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC--CCCcceEEEeeeee
Q 012564 16 NAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL--DYKNYKAEIKTADA 82 (460)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~i~s~d~ 82 (460)
.+.|+.||..|+ .+.+.|..||.++..+ .+ ...|.++|.+.+..+ .|.+++++|..+-+
T Consensus 6 ~~~v~~~~~~~~~~d~~~~~~~~a~d~~~--~~------~~~G~~~~~~~~~~~~~~~pd~~~~i~~~~~ 67 (128)
T 3ehc_A 6 NDIYLAYLDSLNHQAFDELGTFVDDNVEH--NG------RPFGLSGYRDMLVKDFADIPDLRFEAEILVS 67 (128)
T ss_dssp HHHHHHHHHHHHTTCGGGGGGTEEEEEEE--TT------BCCHHHHHHHHHHHHHHHCTTCCCCEEEEEE
T ss_pred HHHHHHHHHHHhcCCHHHHHHhcCcceEe--CC------CCCCHHHHHHHHHHHHhhCCCceEEEEEEEE
Confidence 567889999888 5678999999998765 22 557899998888754 34567777776544
No 287
>3ec9_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.60A {Burkholderia thailandensis E264} SCOP: d.17.4.10
Probab=82.96 E-value=11 Score=30.86 Aligned_cols=66 Identities=9% Similarity=0.115 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHH-HHHhcC--CCCcceEEEeeee
Q 012564 16 NAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGIN-QKILSL--DYKNYKAEIKTAD 81 (460)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~-~~~~~l--~~~~~~~~i~s~d 81 (460)
.+.|+.||..|+ .+.+.|..+|.++..+...+..-....+.|.++|. +.+..+ .|.+++++|..+-
T Consensus 15 ~~~v~~~~~a~~~gD~~~~~~l~a~D~~~~~~~~~p~~g~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~ 84 (140)
T 3ec9_A 15 YQIVADHYAASDRHDPAAMMADIAPAIEWTEMAGFPCAGTYRSADEIVRNVFRRLGEEWDGYTFKLDALH 84 (140)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTEEEEEEEEECTTSTTCEEECSHHHHHHHTHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCHHHHHHhcCCCeEEEEcCCCccceEEcCHHHHHHHHHHHHHhhCCcceeEEEEEE
Confidence 456888888887 56889999999999876654110123678999996 556544 2334556665543
No 288
>3f9s_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative; 1.76A {Acidithiobacillus ferrooxidans atcc 23}
Probab=82.89 E-value=14 Score=30.46 Aligned_cols=68 Identities=9% Similarity=0.128 Sum_probs=46.6
Q ss_pred HHHHHHHHHH-Hhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC--CCCcceEEEeeeee
Q 012564 15 GNAFVEQYYH-ILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL--DYKNYKAEIKTADA 82 (460)
Q Consensus 15 g~~Fv~~YY~-~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~i~s~d~ 82 (460)
-.+.|++||+ .++ .+.+.|..||.++..+.+.-.........|.++|.+.+..+ .|.+++++|..+-+
T Consensus 8 ~~~~v~~~~~~~~~~~d~~~~~~~~a~d~~~~~~p~~~~~g~~~G~~~~~~~~~~~~~~~pd~~~~i~~~~~ 79 (146)
T 3f9s_A 8 AKEILTQFTREVWSEGNIEASDKYIAPKYTVLHDPGDPWEGRELDVAGYKERVKTLRAAFPDQCFDIQGLFA 79 (146)
T ss_dssp HHHHHHHHHHHHTTTCCGGGHHHHEEEEEEEEECTTCTTTTCEECHHHHHHHHHHHHHHSTTCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHcCCCeeeccCCCCCCCCCcCCHHHHHHHHHHHHhhCCCcEEEEEEEEE
Confidence 3567889996 665 57899999999998843332100011567999999888754 35577888876644
No 289
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=82.30 E-value=0.87 Score=36.12 Aligned_cols=65 Identities=15% Similarity=0.185 Sum_probs=44.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCC----CceEEEEEEcCHHHHHHHHHHC-CCCC
Q 012564 299 GHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNK----GYCFGFVEFQSSSSVDNAIQAS-PITI 363 (460)
Q Consensus 299 ~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~----g~g~aFV~F~~~e~a~~Al~~~-~~~i 363 (460)
.-+|-|+.||+.+|++++.+.++.+=.+.......-+.+ ..+-|||.|.+.+++..-.+.. +..+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 457899999999999998877765544322111000111 1456899999999998888777 6554
No 290
>3g0k_A Putative membrane protein; snoal-like polyketide cyclase, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.30A {Novosphingobium aromaticivorans}
Probab=82.05 E-value=21 Score=29.84 Aligned_cols=68 Identities=12% Similarity=0.160 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHHHHH-Hhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC--CCCcceEEEeeeee
Q 012564 9 PSAQVVGNAFVEQYYH-ILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL--DYKNYKAEIKTADA 82 (460)
Q Consensus 9 ~~~~~vg~~Fv~~YY~-~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~i~s~d~ 82 (460)
....+--.+.|+.||. .|+ .+.+.|..||.++-.....+ ...|.+.+.+.+..| .|.+.+++|..+=+
T Consensus 23 ~~~~~~nk~lV~~f~~~a~~~~D~~~~~~~~a~D~v~h~P~------~~~G~e~~~~~~~~~~~~~pd~~~~i~~iia 94 (148)
T 3g0k_A 23 TAEEQANHDLVIEMYNKVLIAMDSSAVDRYIAPGYVQHSSL------AEPSVEALKGFLDRVRAESPDARQTIHRSFV 94 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTTTTCGGGGGGTEEEEEEECCSS------SCSSHHHHHHHHHHHHHHCCSCEEEEEEEEE
T ss_pred cccHHHHHHHHHHHHHHHHhcCCHHHHHHhcCcCeEEcCCC------CCCCHHHHHHHHHHHHHhCCCceEEEEEEEE
Confidence 3445567889999999 676 77889999999884443222 347999998888754 24466777765544
No 291
>1z1s_A Hypothetical protein PA3332; beta barrel, conserved hypothetical protein, structural genomics, PSI, protein structure initiative; HET: PGE; 1.49A {Pseudomonas aeruginosa PAO1} SCOP: d.17.4.10
Probab=82.03 E-value=10 Score=32.17 Aligned_cols=54 Identities=15% Similarity=0.155 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhcc-CcchhcccccCCceEEeeCC-CCcceeeccHHHHHHHHhcCC
Q 012564 16 NAFVEQYYHILHS-TPELVFRFYQDSSVLSRPDS-NGVMTSVTTMEGINQKILSLD 69 (460)
Q Consensus 16 ~~Fv~~YY~~l~~-~p~~l~~fY~~~S~l~~~~~-~~~~~~~~g~~~I~~~~~~l~ 69 (460)
.+.|++||..|+. +.+.|..+|.++..+..... .+....+.|.++|.+.+..+.
T Consensus 26 ~~~v~~~~~a~~~~D~~~l~~l~a~D~v~~~P~~~~g~~~~~~G~~ai~~~~~~~~ 81 (163)
T 1z1s_A 26 KEILVHSLRLLENGDARGWCDLFHPEGVLEFPYAPPGWKTRFEGRETIWAHMRLFP 81 (163)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHTEEEEEEEECSSCCTTSCCEEESHHHHHHTTTTGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHCCCCEEEECcCCCCCCCcccCCHHHHHHHHHHHH
Confidence 4568899998884 67899999999998876532 122335789999999998663
No 292
>1s5a_A Hypothetical protein YESE; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 1.70A {Bacillus subtilis} SCOP: d.17.4.10
Probab=81.64 E-value=12 Score=30.76 Aligned_cols=54 Identities=9% Similarity=0.161 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhc-cCcchhcccccCCceEEeeCC-CCcceeeccHHHHHHHHhcC
Q 012564 15 GNAFVEQYYHILH-STPELVFRFYQDSSVLSRPDS-NGVMTSVTTMEGINQKILSL 68 (460)
Q Consensus 15 g~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~-~~~~~~~~g~~~I~~~~~~l 68 (460)
-...|+.||..++ .+.+.|..||.++..+..... .|....+.|.++|.+.+..+
T Consensus 12 ~~~~v~~~~~a~~~~D~~~l~~l~a~D~~~~~p~~~~g~~~~~~G~~~i~~~~~~~ 67 (150)
T 1s5a_A 12 ACETLRKFMAYMLEKDMKSWTELWDENAVFEFPYAPEGSPKRIEGKAAIYDYIKDY 67 (150)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTCCTTSCSEEESHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHhCCCCEEEEeecCCCCCCccccCHHHHHHHHHHh
Confidence 4578899999887 567899999999998876421 12222578999999998866
No 293
>2a15_A Hypothetical protein RV0760C; beta-alpha-barrel, structural genomics, PSI, protein structure initiative; 1.68A {Mycobacterium tuberculosis} SCOP: d.17.4.3 PDB: 2z76_A* 2z77_A* 2z7a_A
Probab=81.44 E-value=13 Score=30.12 Aligned_cols=63 Identities=8% Similarity=0.036 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCC----cceeeccHHHHHHHHhcCC--CCcceEEEe
Q 012564 15 GNAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNG----VMTSVTTMEGINQKILSLD--YKNYKAEIK 78 (460)
Q Consensus 15 g~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~----~~~~~~g~~~I~~~~~~l~--~~~~~~~i~ 78 (460)
....|+.||..++ .+.+.|..+|.++..+....... .-..+.|.++|.+.+..+- + ++.+.+.
T Consensus 9 ~~~~v~~~~~a~~~~D~~~~~~l~a~D~v~~~p~~~~~~~~~g~~~~G~~ai~~~~~~~~~~~-~~~~~~~ 78 (139)
T 2a15_A 9 ALIASQSSWRCVQAHDREGWLALMADDVVIEDPIGKSVTNPDGSGIKGKEAVGAFFDTHIAAN-RLTVTCE 78 (139)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHTEEEEEEEESSSSSBTTBTTSSCEESHHHHHHHHHHHTTTT-TCEEEEE
T ss_pred HHHHHHHHHHHHhCCCHHHHHHhcCCCEEEECCCCCCccCCCCceeecHHHHHHHHHHhcccc-eeEEecc
Confidence 3567899999998 57889999999999886432100 0012789999999998652 3 4555444
No 294
>2bng_A MB2760; epoxide hydrolase, limonene, hydrolase, structural proteomics in europe, spine, structural genomics; 2.5A {Mycobacterium tuberculosis} SCOP: d.17.4.8
Probab=81.27 E-value=7.2 Score=32.49 Aligned_cols=64 Identities=11% Similarity=0.087 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcCCCC-cceEEEeeee
Q 012564 14 VGNAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLDYK-NYKAEIKTAD 81 (460)
Q Consensus 14 vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~-~~~~~i~s~d 81 (460)
-..+.|++||..++ .+.+.|..||.++..+...+. ..+.|.++|.+.+..+.-. +++++|..+-
T Consensus 16 ~~~~~v~~f~~a~~~gD~~~l~~l~a~D~v~~~~~~----~~~~G~~~i~~~~~~~~~~~~~~~~i~~~~ 81 (149)
T 2bng_A 16 EAIRAVEAFLNALQNEDFDTVDAALGDDLVYENVGF----SRIRGGRRTATLLRRMQGRVGFEVKIHRIG 81 (149)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEETTT----EEEECHHHHHHHHHTTTTTCEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHcCCCEEEEeCCC----CCccCHHHHHHHHHHHHhhcCcEEEEEEEE
Confidence 34678899999887 477899999999987763332 2578999999999876411 4455555543
No 295
>2rgq_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.80A {Nostoc punctiforme} SCOP: d.17.4.25
Probab=81.01 E-value=22 Score=29.29 Aligned_cols=107 Identities=11% Similarity=0.074 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC---CCCcceEEEeeeeeeeeCCCc
Q 012564 14 VGNAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL---DYKNYKAEIKTADAQNSHKEG 89 (460)
Q Consensus 14 vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l---~~~~~~~~i~s~d~q~s~~~g 89 (460)
--..|+..|...|+ .+.+.+..+|.++..+...+ | ...|.++|.+.+... ....+.|.|.++-..... +
T Consensus 11 ~I~~l~~rya~~lD~~d~~~~~~lft~Da~~~~~~--g---~~~g~~~i~~~~~~~~~~~~~~t~H~i~n~~i~~~~-d- 83 (144)
T 2rgq_A 11 EIMELAARFEMSLDKEDVENYLATFASDGALQGFW--G---IAKGKEELRQGFYAMLDTFARGKRHCSSNAIIQGNY-D- 83 (144)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEEETT--E---EEESHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECS-S-
T ss_pred HHHHHHHHHHHHHcCCCHHHHHhhccCcEEEEcCC--C---CCCCHHHHHHHHHHHHhhCCCCcEEecCCeEEEEeC-C-
Confidence 34689999999999 67889999999999886552 2 347999999888642 112367778877663322 2
Q ss_pred EEEEEEEEEE--cCCCCcccE--EEeeeeeecCCcEEEEccEE
Q 012564 90 VTVLVTGCLT--GKDNLRRKF--AQSFFLAPQDNGYFVLNDVF 128 (460)
Q Consensus 90 ili~V~G~~~--~~~~~~~~F--~q~F~L~~~~~~y~v~nDif 128 (460)
...|...+. ........+ .-...|...+++|.|..-.+
T Consensus 84 -~a~~~~~~~~~~~~~~~~~~~g~y~d~~~r~dg~Wri~~r~~ 125 (144)
T 2rgq_A 84 -EATMESYLTVVNREDLNRAGSAFVKDQVRKINGKWYLILRQI 125 (144)
T ss_dssp -EEEEEEEEEEEESSSSCEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred -EEEEEEEEEEEEecCCeEEEEEEEEEEEEEECCEEEEEEEEE
Confidence 222333322 111111111 11234555667787777555
No 296
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=80.08 E-value=1.2 Score=37.83 Aligned_cols=45 Identities=11% Similarity=0.042 Sum_probs=36.5
Q ss_pred EEEeCCCCceEEEEEEcCHHHHHHHHHHC--CCCCCCeEEEEEecccC
Q 012564 331 IQVRHNKGYCFGFVEFQSSSSVDNAIQAS--PITIGGQEAFVEKKKKT 376 (460)
Q Consensus 331 i~~~~~~g~g~aFV~F~~~e~a~~Al~~~--~~~i~gr~i~V~~~~~~ 376 (460)
|.++..+-+|+++|+|.+.++|++||+.+ +..|+| .|.++.+...
T Consensus 5 l~l~g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 5 LILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp EEECCSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred eeeccccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 44444445899999999999999999877 788999 9999977653
No 297
>2f99_A Aklanonic acid methyl ester cyclase, AKNH; anthracycline,polyketide cyclase,stereoselectivity, aklavino biosynthetic protein; HET: AKV; 1.90A {Streptomyces galilaeus} SCOP: d.17.4.9 PDB: 2f98_A*
Probab=79.27 E-value=9.3 Score=32.04 Aligned_cols=65 Identities=11% Similarity=0.007 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC--CCC-cceEEEeeeee
Q 012564 15 GNAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL--DYK-NYKAEIKTADA 82 (460)
Q Consensus 15 g~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~-~~~~~i~s~d~ 82 (460)
..+.|+.||..++ .+.+.|..||.++..+..... + ....|.++|.+.+..+ .|. +++++|..+-+
T Consensus 13 ~~~~v~~~~~a~~~~d~~~~~~~~a~D~v~~~p~~-~--~~~~G~~~~~~~~~~~~~~~p~d~~~~i~~~~~ 81 (153)
T 2f99_A 13 QIAAVRRMVEAYNTGKTDDVADYIHPEYMNPGTLE-F--TSLRGPELFAINVAWVKKTFSEEARLEEVGIEE 81 (153)
T ss_dssp HHHHHHHHHHHHHHCCCTTGGGTEEEEEECGGGTT-T--CCCCHHHHHHHHHHHHHHHHCTTCEEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCHHHHHHhcCCCeEEecCCC-C--CCCCCHHHHHHHHHHHHHHCCCCcEEEEEEEEE
Confidence 4667899999887 567899999999866543332 1 1247999999888765 355 66788776544
No 298
>3ef8_A Putative scyalone dehydratase; YP_496742.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE PG4; 1.50A {Novosphingobium aromaticivorans DSM12444} SCOP: d.17.4.28
Probab=79.07 E-value=19 Score=29.94 Aligned_cols=111 Identities=8% Similarity=0.015 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC--CCCcceEEEeeeeeeeeCCCcEEE
Q 012564 16 NAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL--DYKNYKAEIKTADAQNSHKEGVTV 92 (460)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~i~s~d~q~s~~~gili 92 (460)
..++..|...|+ .+.+.|..+|.++..+.+... ....|.++|.+.+..+ .|..+.|.|.++......++...+
T Consensus 14 ~~l~~ry~~~~D~~d~~~~~~lFt~D~~~~~~~~----~~~~G~~~i~~~~~~~~~~~~~~~H~~~n~~I~~~gdd~A~~ 89 (150)
T 3ef8_A 14 ERMMFDYSYHLDMNHPEELAALFVEDCEVSYAPN----FGATGRDAYKKTLEGIGTFFRGTSHHNSNICIDFVSETEANV 89 (150)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTEEEEEEEEEETT----EEEESHHHHHHHTTTHHHHEEEEEEEEEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHhcCCCHHHHHhhccCceEEEccCC----CCCCCHHHHHHHHHHhhcccCceEEecCCEEEEEcCCCEEEE
Confidence 568889999998 678899999999998866432 1467999999988765 234456777776655443333322
Q ss_pred EEEEEE--EcCCCCcccE---EEeeeeeecCCcEEEEccEEEE
Q 012564 93 LVTGCL--TGKDNLRRKF---AQSFFLAPQDNGYFVLNDVFRY 130 (460)
Q Consensus 93 ~V~G~~--~~~~~~~~~F---~q~F~L~~~~~~y~v~nDifr~ 130 (460)
...-.+ ...++....+ .-...|...+++|.|..=.+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~gry~d~~~r~dg~Wri~~r~~~~ 132 (150)
T 3ef8_A 90 RSVVLAIHRYTKERPDGILYGQYFDTVVKVDGQWKFKRRELRT 132 (150)
T ss_dssp EEEEEEEEEESSSSCCEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEEEEEccCCCCeEEEEEEEEEEEEEECCEEEEEEEEEEe
Confidence 222111 1122111111 1223344567788877766644
No 299
>1tuh_A BAL32A, hypothetical protein EGC068; unknown function; 1.85A {Uncultured bacterium} SCOP: d.17.4.11
Probab=77.55 E-value=5.9 Score=33.32 Aligned_cols=68 Identities=10% Similarity=0.138 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcCC--CC-cceEEEeee
Q 012564 13 VVGNAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLD--YK-NYKAEIKTA 80 (460)
Q Consensus 13 ~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l~--~~-~~~~~i~s~ 80 (460)
+-..+.|++||..++ .+.+.|..||.++..+...+.......+.|.++|.+.+..+. +. +.+++|..+
T Consensus 29 ~~~~~~v~~~~~a~~~gD~~~l~~l~a~D~~~~~~~~~~~~g~~~G~~~i~~~~~~~~~~~~~~~~~~i~~~ 100 (156)
T 1tuh_A 29 EQNAETVRRGYAAFNSGDMKTLTELFDENASWHTPGRSRIAGDHKGREAIFAQFGRYGGETGGTFKAVLLHV 100 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEECSSSTTCEEEESHHHHHHHHHHHHHTTTTCCEEEEEEE
T ss_pred chHHHHHHHHHHHHhCCCHHHHHHhcCCCEEEEccCCCCccceEcCHHHHHHHHHHHHhhcCCceEEEEEEE
Confidence 345678999999888 577899999999987765543111224689999998887542 11 345666654
No 300
>3kkg_A Putative snoal-like polyketide cyclase; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2, lyase; HET: MSE PGE; 1.40A {Jannaschia SP}
Probab=76.61 E-value=10 Score=31.33 Aligned_cols=64 Identities=6% Similarity=-0.041 Sum_probs=47.3
Q ss_pred HHHHHHHHHH-Hhcc-C--cchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC--CCCcceEEEeeeee
Q 012564 15 GNAFVEQYYH-ILHS-T--PELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL--DYKNYKAEIKTADA 82 (460)
Q Consensus 15 g~~Fv~~YY~-~l~~-~--p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~i~s~d~ 82 (460)
-.+.|+.||. .++. + .+.|..||.++..+..... ....|.++|.+.+..+ .|.+++++|..+-+
T Consensus 11 n~~~v~~~~~~~~~~~d~~~~~~~~~~a~d~~~~~~~~----~~~~G~~~~~~~~~~~~~~~pd~~~~i~~~~~ 80 (146)
T 3kkg_A 11 NVETVLRLFDEGWGAQDGWRDVWRETMTPGFRSIFHSN----QAVEGIEQAIAFNAVLFEGFPRLEVVVENVTV 80 (146)
T ss_dssp HHHHHHGGGTTTSTTSTTHHHHHHHHEEEEEEEEETTS----CCEESHHHHHHHHHHHHHHSTTCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHcCCCeEEecCCC----CCCCCHHHHHHHHHHHHHhCCCceeEEEEEEE
Confidence 3678999999 7764 4 6899999999987764432 2678999998888754 35577888876644
No 301
>2f86_B Hypothetical protein K11E8.1D; UNC-43, oligomerization domain, transferase; 2.64A {Caenorhabditis elegans} SCOP: d.17.4.7
Probab=74.91 E-value=20 Score=30.00 Aligned_cols=111 Identities=10% Similarity=0.052 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcCCCCcceEEEeeeeeeeeCCCcEEEE-
Q 012564 16 NAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLDYKNYKAEIKTADAQNSHKEGVTVL- 93 (460)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~s~d~q~s~~~gili~- 93 (460)
..++++|...++ .+-+.+.++|.++-++.=....+. .+.|++.+...+.........+++.....+...++..++.
T Consensus 15 ~~~~~~~~~Ai~~gD~~~~~~l~~~dv~~Fd~~~~g~--~~~g~~~~r~~f~~~~~~~~~~~~~~~~V~~~g~d~Av~~y 92 (143)
T 2f86_B 15 VRVTQTLLDAISCKDFETYTRLCDTSMTCFEPEALGN--LIEGIEFHRFYFDGNRKNQVHTTMLNPNVHIIGEDAACVAY 92 (143)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHEEEEEEEECGGGTTC--CEETTHHHHTTSSSCSCCSCEEEEEEEEEEEETTTEEEEEE
T ss_pred HHHHHHHHHHHHccCHHHHHHhcCCCEEEEccCcCCc--cccCHHHHHHHHhcccCCcceeEEEcceEEEeCCCEEEEEE
Confidence 467788888876 788999999988776631111111 5779988885544323334577888887777653433322
Q ss_pred --EEEEEEcCCCC-cccEEEeeeeeecCCcEEEEccEE
Q 012564 94 --VTGCLTGKDNL-RRKFAQSFFLAPQDNGYFVLNDVF 128 (460)
Q Consensus 94 --V~G~~~~~~~~-~~~F~q~F~L~~~~~~y~v~nDif 128 (460)
.++.+..++.+ ...+--|.++..++++|-|...-.
T Consensus 93 ~~~~~~~~~~G~~~~~~~r~T~V~~k~~g~WkivH~H~ 130 (143)
T 2f86_B 93 VKLTQFLDRNGEAHTRQSQESRVWSKKQGRWVCVHVHR 130 (143)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred EeeeeeccCCCCeeeEEEEEEEEEEEeCCcEEEEEEeE
Confidence 22322223322 245777888888889999988655
No 302
>3fgy_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.59A {Burkholderia xenovorans LB400} SCOP: d.17.4.0
Probab=73.54 E-value=4.6 Score=32.85 Aligned_cols=54 Identities=4% Similarity=0.047 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC
Q 012564 15 GNAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL 68 (460)
Q Consensus 15 g~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l 68 (460)
-.+.|+.||..++ .+.+.|..+|.++..+...+..-......|.++|.+.+..+
T Consensus 7 ~~~~v~~~~~a~~~~d~~~~~~l~a~D~~~~~p~~~p~~g~~~G~~~i~~~~~~~ 61 (135)
T 3fgy_A 7 NVQIVKDFFAAMGRGDKKGLLAVSAEDIEWIIPGEWPLAGTHRGHAALAALLQKA 61 (135)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHTEEEEEEEEECSSSTTCEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhcCCCeEEEEcCCCccceEEeCHHHHHHHHHHH
Confidence 3567889999888 47899999999998876655211123568999999888765
No 303
>2k54_A Protein ATU0742; protein of unknown function, structural genomics, PSI-2, Pro structure initiative; NMR {Agrobacterium tumefaciens str} SCOP: d.17.4.29
Probab=70.39 E-value=37 Score=26.70 Aligned_cols=91 Identities=9% Similarity=0.009 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC-CCCcceEEEeeeeeeeeCCCcEEEE
Q 012564 16 NAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL-DYKNYKAEIKTADAQNSHKEGVTVL 93 (460)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l-~~~~~~~~i~s~d~q~s~~~gili~ 93 (460)
...|+.||..++ .+.+.+..+|.++..+.... + .....|.++|.+.+..+ .-.+.+++|..+-+ . ++. |.
T Consensus 6 ~~~v~~~~~a~n~~D~~~~~~~~a~D~~~~~~~--g-~~~~~G~~ai~~~~~~~~~~~~~~~~~~~~~~--~-gd~--v~ 77 (123)
T 2k54_A 6 ELPVQKQLEAYNARDIDAFMAWWADDCQYYAFP--A-TLLAGNAAEIRVRHIERFKEPDLYGELLTRVI--V-GNV--VI 77 (123)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHTEEEEEEEEETT--T-EEEEESHHHHHHHHHHHTTCTTCEEEEEEEEE--E-TTE--EE
T ss_pred HHHHHHHHHHHHhcCHHHHHhhcCCceEEEcCC--C-CcccCCHHHHHHHHHHHcCCCCcEEEEEEEEE--E-CCE--EE
Confidence 467899999998 56789999999998764322 1 12467999999988753 22344555554432 2 232 33
Q ss_pred EEEEEEcC-CCC--cccEEEeeee
Q 012564 94 VTGCLTGK-DNL--RRKFAQSFFL 114 (460)
Q Consensus 94 V~G~~~~~-~~~--~~~F~q~F~L 114 (460)
+...++.. ... ...++..|.|
T Consensus 78 ~~~~~~g~~~~~~~~~~~~~vf~v 101 (123)
T 2k54_A 78 DHETVTRNFPEGKGEVDVACIYEV 101 (123)
T ss_dssp EEEEEECCBTTBCCEEEEEEEEEE
T ss_pred EEEEEEeECCCCceEEEEEEEEEE
Confidence 34444432 111 3456666666
No 304
>3f40_A Uncharacterized NTF2-like protein; YP_677363.1, NTF2-like protein of unknown function, structural genomics; HET: MSE; 1.27A {Cytophaga hutchinsonii atcc 33406}
Probab=68.13 E-value=11 Score=30.11 Aligned_cols=49 Identities=10% Similarity=0.126 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcCC
Q 012564 16 NAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLD 69 (460)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l~ 69 (460)
.+.|+.||..++ .+.+.|..++.++..+...+. .+.|.+++...+..+-
T Consensus 9 ~~~v~~f~~A~~~gD~~~l~~lla~Dvv~~~~~g-----~~~G~~~v~~~~~~~~ 58 (114)
T 3f40_A 9 RDLVLEFIHALNTENFPAAKKRLNENFTFNGPMG-----HREGSERYMNDMEKMK 58 (114)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHTEEEEEEEEETTE-----EEESHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHhcCCCeEEECCCC-----cccCHHHHHHHHHHHH
Confidence 456788888887 678899999999988765543 6789999999988764
No 305
>3ke7_A Putative ketosteroid isomerase; structural genomics, joint C structural genomics, JCSG, protein structure initiative; HET: MSE BCN; 1.45A {Parabacteroides distasonis atcc 8503}
Probab=64.93 E-value=58 Score=26.88 Aligned_cols=101 Identities=12% Similarity=0.104 Sum_probs=66.6
Q ss_pred hccCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcCC-CCcceEEEeeeeeeeeCCCcEEEEEEEEEEcCCCC
Q 012564 26 LHSTPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLD-YKNYKAEIKTADAQNSHKEGVTVLVTGCLTGKDNL 104 (460)
Q Consensus 26 l~~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l~-~~~~~~~i~s~d~q~s~~~gili~V~G~~~~~~~~ 104 (460)
-..+++.+..+|.++.++--.-. ...+.|.++|..++..+. -..|.++|.....|-..+-+++-.+. .....+ .
T Consensus 28 ~~gD~~~~~~lyapDvt~fDp~~---~~~~~G~~a~r~yf~~~~~~~~~~~ei~~p~V~v~gD~A~~~y~l-~~~~~~-~ 102 (134)
T 3ke7_A 28 ASTDPMAFVELSDTDVIYFDPSL---ETKIEGLEQLRTYYKGMQLPPADHFDMIRPVVQVAQNIAVLTFNL-DSYLSD-K 102 (134)
T ss_dssp HCSCTTHHHHHEEEEEEEECTTC---SSCEESHHHHHHHHHHHCCCCCSEEEEEEEEEEEETTEEEEEEEE-EEEETT-E
T ss_pred hCCCHHHHHHhcCCCEEEEcCCC---ccccCCHHHHHHHHHhcccCCcceEEEeCCeEEEeCceEEEEEEE-EEeeCC-C
Confidence 34789999999998877632211 125789999999998743 13367889888877754443332111 111122 2
Q ss_pred cccEEEeeeeeec-CCcEEEEccEEEEe
Q 012564 105 RRKFAQSFFLAPQ-DNGYFVLNDVFRYV 131 (460)
Q Consensus 105 ~~~F~q~F~L~~~-~~~y~v~nDifr~~ 131 (460)
....-.|+++... +++|.|.+.-..++
T Consensus 103 ~~~~r~T~V~~r~~dG~W~ivH~H~S~~ 130 (134)
T 3ke7_A 103 VIKWNCTEVYRRNPDNQWKIIQTHWSYV 130 (134)
T ss_dssp EEEEEEEEEEEECTTSBEEEEEEEEEES
T ss_pred cEEEEEEEEEEEcCCCcEEEEEEeeccc
Confidence 4456778999999 88999998776554
No 306
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=64.92 E-value=13 Score=38.27 Aligned_cols=54 Identities=22% Similarity=0.394 Sum_probs=42.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHC
Q 012564 299 GHSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQAS 359 (460)
Q Consensus 299 ~~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~ 359 (460)
...++|+ ++..+...+|.++|+.||.+. |.+-.+ ..+||.|.+.+.|..++..+
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~---V~widd---t~a~V~~~~~~~a~~~l~~~ 493 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQ---ISWIDD---TSAFVSLSQPEQVQIAVNTS 493 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCE---EEECSS---SEEEEECSCHHHHHHHHHHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEE---EEEEcC---CeEEEEECCHHHHHHHHHHH
Confidence 3567776 888889999999999999654 333322 35999999999999988876
No 307
>3grd_A Uncharacterized NTF2-superfamily protein; NP_977240.1, NTF2-superfamily protein with unknown function, structural genomics; HET: MSE; 1.25A {Bacillus cereus atcc 10987} SCOP: d.17.4.0
Probab=63.96 E-value=8.9 Score=31.03 Aligned_cols=96 Identities=13% Similarity=0.212 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHH-HHhcC--CCCcceEEEeeeeeeeeCCCcEE
Q 012564 16 NAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQ-KILSL--DYKNYKAEIKTADAQNSHKEGVT 91 (460)
Q Consensus 16 ~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~-~~~~l--~~~~~~~~i~s~d~q~s~~~gil 91 (460)
.+.|+.||..|+ .+.+.|..+|.++..+...+..-......|.++|.+ .+..| .|.++++.|..+. ...++. .
T Consensus 7 ~~~v~~~~~a~~~~D~~~~~~l~a~D~~~~~~~~~p~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~gd-~ 83 (134)
T 3grd_A 7 LEIIRSTYEGSASSNAKHLAEALSEKVEWTEAEGFPYGGTYIGVEAIMENVFSRLGSEWNDYKASVNMYH--EVSGKD-V 83 (134)
T ss_dssp HHHHHTTTSSCHHHHHHHHHHHEEEEEEEEECTTSTTCEEEESHHHHHHHTHHHHHHHEEEEEEEEEEEE--EBTTSS-E
T ss_pred HHHHHHHHHHHhcCCHHHHHHhcCCCeEEEecCCcccCcEEeCHHHHHHHHHHHHHhhccccccchhhee--eecCCC-E
Confidence 456888888877 467899999999998765541101135789999985 55543 2334555555442 222332 3
Q ss_pred EEEEEEEEc----CCCC-cccEEEeeee
Q 012564 92 VLVTGCLTG----KDNL-RRKFAQSFFL 114 (460)
Q Consensus 92 i~V~G~~~~----~~~~-~~~F~q~F~L 114 (460)
|.|.|.+.. .+.. ...|+..|.+
T Consensus 84 v~v~~~~~~~~~~tG~~~~~~~~~v~~~ 111 (134)
T 3grd_A 84 IIAEGMYSGVYKDTGKSFEAEFVHVWQL 111 (134)
T ss_dssp EEEEEEEEEEETTTCCEEEEEEEEEEEE
T ss_pred EEEEEEEeeEECCCCCEeeeeEEEEEEE
Confidence 444555432 1222 1356666666
No 308
>3rga_A Epoxide hydrolase; NTF2-like, epoxide-opening cyclic ether formation, isomerase; HET: LSB ILD; 1.59A {Streptomyces lasaliensis}
Probab=63.59 E-value=13 Score=34.98 Aligned_cols=51 Identities=12% Similarity=0.202 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC
Q 012564 15 GNAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL 68 (460)
Q Consensus 15 g~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l 68 (460)
...+|+.||..|+ .+.+.|..+|.++..+...-. ...+.|.++|...+..+
T Consensus 8 ~~~~v~~~~~~~~~~D~~~l~~l~a~Dav~~~P~~---~~~~~Gr~ai~~~~~~~ 59 (283)
T 3rga_A 8 RKEVALEYCRRVNAGELEGVLQLFAPDARLVDPLG---TEPVVGRAALAARLAPA 59 (283)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHTEEEEEEEECSSS---SCCEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHhcCCCEEEECCCC---CCCcCcHHHHHHHHHHH
Confidence 4678999999998 788999999999999875421 12678999999999764
No 309
>3mso_A Steroid delta-isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.57A {Pseudomonas aeruginosa}
Probab=57.15 E-value=9.5 Score=31.94 Aligned_cols=52 Identities=8% Similarity=0.098 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC
Q 012564 14 VGNAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL 68 (460)
Q Consensus 14 vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l 68 (460)
....++..||..++ .+.+.|..+|.++.++.-.-. ...+.|.+.|...|..+
T Consensus 10 ~~~~~~~~~~~a~~~~D~~~l~~l~a~D~v~~~P~~---~~~~~G~~~v~~~~~~~ 62 (143)
T 3mso_A 10 NAAATLAEWHGLIARRDLSGLPRLLHPDAVFRSPMA---HKPYAGAPVVSMILNTV 62 (143)
T ss_dssp HHHHHHHHHHHHHHTTCCTTGGGGEEEEEEEECSSC---SSCEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHhcCCCEEEECCCC---CCCccCHHHHHHHHHHH
Confidence 34678999999887 678899999999999875321 12788999999998764
No 310
>3ejv_A Uncharacterized protein with cystatin-like fold; structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.40A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID} SCOP: d.17.4.28
Probab=56.19 E-value=98 Score=26.63 Aligned_cols=73 Identities=5% Similarity=0.074 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHhc-cCcchhcccccCCceEEee---C-CCCcceeeccHHHHHHHHhcCC-----CCcceEEEeeee
Q 012564 12 QVVGNAFVEQYYHILH-STPELVFRFYQDSSVLSRP---D-SNGVMTSVTTMEGINQKILSLD-----YKNYKAEIKTAD 81 (460)
Q Consensus 12 ~~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~---~-~~~~~~~~~g~~~I~~~~~~l~-----~~~~~~~i~s~d 81 (460)
.+--..++..|...|+ .+.+.|..+|.++..+.+. | ..+....+.|.++|.+.+...- |..+.|.|.++.
T Consensus 25 ~~~I~~l~~~y~~~~D~~d~d~~~~lFt~D~~~~~~~~~Gg~~g~~~~~~Gr~aI~~~~~~~~~~~~~~~~t~H~~~n~~ 104 (179)
T 3ejv_A 25 ETIILNVLGQYTRAHDRRDPDAMAALFAPEATIEIVDAVGGASRSISRLEGRDAIRVAVRQMMAPHGYRAWSQNVVNAPI 104 (179)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEEEEECGGGCCEEEEEEESHHHHHHHHHHSSCCCCTTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHhhcCCceEEEEeccCCCcCCCcceecCHHHHHHHHHHhhcccccccceEEEcCCCE
Confidence 3344677888998888 6889999999999988764 2 1222346789999999987542 444567777665
Q ss_pred eee
Q 012564 82 AQN 84 (460)
Q Consensus 82 ~q~ 84 (460)
.--
T Consensus 105 I~v 107 (179)
T 3ejv_A 105 IVI 107 (179)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 311
>3rga_A Epoxide hydrolase; NTF2-like, epoxide-opening cyclic ether formation, isomerase; HET: LSB ILD; 1.59A {Streptomyces lasaliensis}
Probab=52.46 E-value=88 Score=29.17 Aligned_cols=55 Identities=7% Similarity=0.099 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC
Q 012564 11 AQVVGNAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL 68 (460)
Q Consensus 11 ~~~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l 68 (460)
..+--.++|+.||..|+ .+.+.|..+|.++..+...-. ...+.|.++|.+.+..+
T Consensus 136 ~~~~~~~~v~~~~~a~~~~D~~~l~~l~a~D~v~~~P~~---~~~~~G~~ai~~~~~~~ 191 (283)
T 3rga_A 136 DEERRKELAREHCLRINDGDVDGLLKLYSPRIRFEDPVG---SWTRTGLEALRAHATMA 191 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEESSTT---SCEEESHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHhcCCCeEEECCCC---CCcccCHHHHHHHHHHh
Confidence 34566789999999998 788999999999999875421 12678999999999765
No 312
>3f8h_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Silicibacter SP}
Probab=50.99 E-value=95 Score=25.59 Aligned_cols=48 Identities=4% Similarity=0.097 Sum_probs=37.5
Q ss_pred HHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC
Q 012564 17 AFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL 68 (460)
Q Consensus 17 ~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l 68 (460)
+.|+.||..|+ .+.+.|..+|.++..+..... ....|.++|.+.+..+
T Consensus 22 ~~v~~~~~a~n~~D~~~l~~l~a~D~v~~~~~~----~~~~G~e~i~~~~~~~ 70 (150)
T 3f8h_A 22 DTIARYFDAFNAGDTDGMLACLSEDVAHHVNEG----NIRVGKEKFAAFCAHM 70 (150)
T ss_dssp CHHHHHHHHHHHTCHHHHHTTEEEEEEEEEETT----EEEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHcCCCeEEeCCCC----cceeCHHHHHHHHHHH
Confidence 46889999998 688899999999998432221 2678999999988854
No 313
>3g16_A Uncharacterized protein with cystatin-like fold; YP_001022489.1, protein of unknown function with cystatin-LI structural genomics; HET: MSE; 1.45A {Methylibium petroleiphilum PM1}
Probab=46.11 E-value=1.4e+02 Score=25.37 Aligned_cols=67 Identities=9% Similarity=0.049 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcCC--CCcceEEEeee
Q 012564 12 QVVGNAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLD--YKNYKAEIKTA 80 (460)
Q Consensus 12 ~~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l~--~~~~~~~i~s~ 80 (460)
.+.-...|++||..++ .+.+.|..||.++..+..+..- ....+.|.++|.+.+..+. | +.++.|..+
T Consensus 9 ~~~~~~~v~ry~~A~n~gD~d~l~~l~aeD~v~~~p~~~-p~~~~~Greai~~~f~~~~~~~-d~~~~~e~i 78 (156)
T 3g16_A 9 RAAMEKVIRTYYDGCNEADEAKMIACFVPEAVHYFPAGM-YGGAFRGAAQIAHRWRTAVETL-GSYWTIDAL 78 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECBTTS-TTSCEESHHHHHHHHHHHHHHH-CEEEEEEEE
T ss_pred chhHHHHHHHHHHHHHcCCHHHHHHhcCCCEEEecCCCC-CCCCccCHHHHHHHHHHHHhhc-CceEEEEEE
Confidence 4667888999999998 5788999999999998765410 0225789999999998542 2 334444443
No 314
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=39.96 E-value=7.6 Score=31.05 Aligned_cols=18 Identities=33% Similarity=0.401 Sum_probs=0.0
Q ss_pred CCcEEEEcCCCCCCCHHH
Q 012564 298 EGHSIYIRNLPDTMTVAS 315 (460)
Q Consensus 298 ~~~~lfV~nLp~~vte~~ 315 (460)
..++|||+|||+++|++.
T Consensus 96 ~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 96 EFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp ------------------
T ss_pred CCCceEeCCCCCCccccc
Confidence 456799999999999864
No 315
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=38.33 E-value=6.6 Score=38.63 Aligned_cols=14 Identities=21% Similarity=0.183 Sum_probs=9.8
Q ss_pred CCCCHHHHHHHhhc
Q 012564 309 DTMTVASLEVEFKK 322 (460)
Q Consensus 309 ~~vte~~L~~~F~~ 322 (460)
..+++++|+++...
T Consensus 227 ~~vt~~~l~~i~~~ 240 (358)
T 2pk2_A 227 ATVTLELLDELTHE 240 (358)
T ss_dssp SSCCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHH
Confidence 35688888887653
No 316
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=38.11 E-value=7.1 Score=35.70 Aligned_cols=12 Identities=8% Similarity=-0.075 Sum_probs=7.4
Q ss_pred EEEEEcCHHHHH
Q 012564 342 GFVEFQSSSSVD 353 (460)
Q Consensus 342 aFV~F~~~e~a~ 353 (460)
-.|.|.......
T Consensus 142 l~V~~a~~~~~~ 153 (229)
T 3q2s_C 142 PVVTPVNKQFLS 153 (229)
T ss_dssp CEEEECCHHHHH
T ss_pred eEEEECCCCccc
Confidence 467777765544
No 317
>3cwz_B RAB6IP1, RAB6-interacting protein 1; RAB small GTPase, RAB-binding domain, guanosine 5' triphosphate, RUN, RPIP8, UNC-14, nesca PLAT; HET: GTP; 3.20A {Mus musculus}
Probab=35.83 E-value=38 Score=33.56 Aligned_cols=77 Identities=21% Similarity=0.212 Sum_probs=48.8
Q ss_pred HHHHHHHH---------HHHHHhccCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcCC---C---------C
Q 012564 13 VVGNAFVE---------QYYHILHSTPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLD---Y---------K 71 (460)
Q Consensus 13 ~vg~~Fv~---------~YY~~l~~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l~---~---------~ 71 (460)
--|++|++ .|.+.|-.+++.|..||.+.+.|...+ ....|...|..|. | .
T Consensus 176 GrgRAWiRlaLne~~L~~yL~~ll~~~~~l~~~Y~~~A~L~~~E---------e~~~il~~L~gLn~vDf~~f~~~~Ttt 246 (384)
T 3cwz_B 176 GKARAWVRLSMEKKLLSRHLKQLLSDHELTKKLYKRYAFLRCDD---------EKEQFLYHLLSFNAVDYFCFTNVFTTI 246 (384)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTCHHHHHHHBCTTSTTTCHH---------HHHHHHHHHGGGGSSCCCTTTTTCTTS
T ss_pred cchhHHHHHHHhcchHHHHHHHHHhCchhhhhhcccchhhcCcc---------hhhhhhhhcccccccchhhcccccccc
Confidence 35777866 499999999999999999999886433 2445555555442 1 1
Q ss_pred cce--EEEeeeeeee--eCCCcEEEEEEEEE
Q 012564 72 NYK--AEIKTADAQN--SHKEGVTVLVTGCL 98 (460)
Q Consensus 72 ~~~--~~i~s~d~q~--s~~~gili~V~G~~ 98 (460)
.+. +.|.+=+.-. ..+..|.|.+.|..
T Consensus 247 ~~~Y~V~V~TG~~~gaAGT~anV~I~L~G~~ 277 (384)
T 3cwz_B 247 LIPYHILIVPSKKLGGSMFTANPWICISGEL 277 (384)
T ss_dssp EEEEEEEEEECCCCCSCCCCSCEEEEEEESS
T ss_pred ceeEEEEEEeCCCCCCCCCCCcEEEEEEeCC
Confidence 233 3344433321 12344889998864
No 318
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=35.10 E-value=96 Score=21.67 Aligned_cols=58 Identities=10% Similarity=0.033 Sum_probs=43.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEEEeCCCCceEEEEEEcCHHHHHHHHHHCCCC
Q 012564 300 HSIYIRNLPDTMTVASLEVEFKKFGPVKQGGIQVRHNKGYCFGFVEFQSSSSVDNAIQASPIT 362 (460)
Q Consensus 300 ~~lfV~nLp~~vte~~L~~~F~~~G~v~~~~i~~~~~~g~g~aFV~F~~~e~a~~Al~~~~~~ 362 (460)
.++.|.++.-.-=...|+..+.+ ..|..+.+ +-..+-+.|+|.+.+...++|+..|+.
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v----~~~~~~~~v~~~~~~~i~~~i~~~Gy~ 64 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKV----DLNEAVVAGNKEDVDKYIKAVEAAGYQ 64 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEE----CSSEEEEEEEGGGHHHHHHHHHHTTCE
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEE----EccCCEEEEEECCHHHHHHHHHHcCCc
Confidence 56888888766667889999988 77887666 333455778888777888888887653
No 319
>3f8x_A Putative delta-5-3-ketosteroid isomerase; structural genomics, joint center for structural genomics; HET: MSE; 1.55A {Pectobacterium atrosepticum SCRI1043}
Probab=33.95 E-value=38 Score=28.51 Aligned_cols=54 Identities=9% Similarity=0.130 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcC
Q 012564 12 QVVGNAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL 68 (460)
Q Consensus 12 ~~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l 68 (460)
.+....+++.|+..+. .+.+.|..+|.++..+.-.-. ...+.|.+.|...|..+
T Consensus 19 ~~~~~~~l~~f~~a~~~gD~~aL~~LlA~Dvv~~~P~~---~~~~~G~~av~~~~~~~ 73 (148)
T 3f8x_A 19 NAAVQSGLQEWHRIIAEADWERLPDLLAEDVVFSNPST---FDPYHGKGPLMVILPAV 73 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTCGGGSGGGEEEEEEEECSSC---SSCEESHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHhCCCEEEECCCC---CCCcCCHHHHHHHHHHH
Confidence 3667789999999888 578899999999999864321 12688999999998754
No 320
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=30.83 E-value=10 Score=37.21 Aligned_cols=9 Identities=44% Similarity=0.689 Sum_probs=4.3
Q ss_pred hcccccCCc
Q 012564 33 VFRFYQDSS 41 (460)
Q Consensus 33 l~~fY~~~S 41 (460)
+++||...+
T Consensus 66 ~dRFl~~~s 74 (358)
T 2pk2_A 66 MHRFYMIQS 74 (358)
T ss_dssp HHHHTTTSC
T ss_pred HHHHHhcCC
Confidence 455555443
No 321
>4gb5_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, snoal-like domain, unknown function; HET: PGE; 1.55A {Kribbella flavida}
Probab=29.82 E-value=1.2e+02 Score=25.06 Aligned_cols=68 Identities=9% Similarity=0.074 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhccCc-chh-cccccCCceEEeeCCCCcceeeccHHHHHHHHhcC--CCCcceEEEeeeeee
Q 012564 16 NAFVEQYYHILHSTP-ELV-FRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSL--DYKNYKAEIKTADAQ 83 (460)
Q Consensus 16 ~~Fv~~YY~~l~~~p-~~l-~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~i~s~d~q 83 (460)
...+..|-..++..- +.| ..||.++..+.+....+......|.++|.+.+... .+..+.|.|.++...
T Consensus 14 ~~L~~rY~~~~D~~d~~~l~~~~ft~Da~~d~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~t~H~~~n~~I~ 85 (159)
T 4gb5_A 14 IELFGRYADIADLKEFTDLPRRVHTDPLTIDFESVTGMPPMTVPLSDYGAALRASFGAFSATHHAITGHVVT 85 (159)
T ss_dssp HHHHHHHHHHHHTTCCSSHHHHHEEEEEEEECHHHHCCCCEEECHHHHHHHHHHHHTTCSEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCHHHHHHhhCcCCEEEEecCCCCCcccccHHHHHHHHHHHhccCCceEEEecCCceEE
Confidence 456889999998654 665 57999999886643223333667899999887642 344456766665443
No 322
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=27.75 E-value=1.7e+02 Score=25.34 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=36.9
Q ss_pred EEEEcCCCC-C--------CCHHHHHHHh--hcCCCeeEEEEEEeCCCCceEEEEEEcCH-HHHHHHHHH
Q 012564 301 SIYIRNLPD-T--------MTVASLEVEF--KKFGPVKQGGIQVRHNKGYCFGFVEFQSS-SSVDNAIQA 358 (460)
Q Consensus 301 ~lfV~nLp~-~--------vte~~L~~~F--~~~G~v~~~~i~~~~~~g~g~aFV~F~~~-e~a~~Al~~ 358 (460)
.+.|-|++. . .+..+|++.| ..|.+++- ..........|++.|+|.+- .....|+..
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv-~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~f 82 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRV-RPLWNYLGHSGTAIVEFNKDWNGLHNGLLF 82 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEE-EEEECSSBEEEEEEEECCSSHHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCcee-EecccCCCCceeEEEEecCChHHHHHHHHH
Confidence 445567665 1 3457899977 99998773 34444443589999999964 445555543
No 323
>2imj_A Hypothetical protein DUF1348; alpha beta protein, structural genomics, PSI-2, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} SCOP: d.17.4.23
Probab=25.88 E-value=74 Score=26.96 Aligned_cols=110 Identities=16% Similarity=0.126 Sum_probs=62.9
Q ss_pred CCCHHHHHHHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhc-----CCCCcceEEEeeee
Q 012564 8 PPSAQVVGNAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILS-----LDYKNYKAEIKTAD 81 (460)
Q Consensus 8 ~~~~~~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~-----l~~~~~~~~i~s~d 81 (460)
+|--.+-|..=|+-=-..-+ .+|+.|..-|..+|..-=.+. .++|.++|..+|.. |+|. -|+.+=
T Consensus 12 PPFt~EtA~~KVr~AEDaWNsrdP~rValAYT~Ds~WRNR~e-----F~~GR~eI~~FLtrKW~rE~dYr----LiKELw 82 (166)
T 2imj_A 12 PPFTRESAIEKIRLAEDGWNSRDPERVSLAYTLDTQWRNRAE-----FAHNREEAKAFLTRKWAKELDYR----LIKELW 82 (166)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTTCHHHHHTTEEEEEEEEETTE-----EECSHHHHHHHHHHHHHHSEEEE----EEEEEE
T ss_pred CCCCHHHHHHHHHHHHhhhcccChHHHhhccCCCCceecccc-----ccCcHHHHHHHHHHHHHhhccch----hhhhhh
Confidence 34444555555665555555 789999999999998743344 88999999999973 4443 122222
Q ss_pred eeeeCCCcEEEEEEEEEEcCCCCc-ccE-EEeeeeeecC---CcEEEEccEE
Q 012564 82 AQNSHKEGVTVLVTGCLTGKDNLR-RKF-AQSFFLAPQD---NGYFVLNDVF 128 (460)
Q Consensus 82 ~q~s~~~gili~V~G~~~~~~~~~-~~F-~q~F~L~~~~---~~y~v~nDif 128 (460)
+- .+|.|-|-..-+..-..... |.+ ........++ ..+-..||+-
T Consensus 83 af--~~nRIAVRFaYEw~D~~gqWfRsyGnEnWeFd~~GlM~~R~aSiND~p 132 (166)
T 2imj_A 83 AF--TDNRIAVRYAYEWHDDSGNWFRSYGNENWEFDEQGLMARRFACINDMP 132 (166)
T ss_dssp EE--ETTEEEEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEEEE
T ss_pred ee--cCCeEEEEEEeEEecCCCCEehhcCCccceECCCcChhheeccccccc
Confidence 21 24556665555554333332 222 1222222222 2466777774
No 324
>3ub1_A ORF13-like protein; NTF2-like, transport protein; HET: MSE; 1.80A {Clostridium perfringens}
Probab=25.28 E-value=3.4e+02 Score=25.01 Aligned_cols=87 Identities=13% Similarity=0.150 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhc-cCcchhcccccCCceEEeeCCCCcceeeccHHHHHHHHhcCCCCcceEEEeeeeeeeeCCCcEEE
Q 012564 14 VGNAFVEQYYHILH-STPELVFRFYQDSSVLSRPDSNGVMTSVTTMEGINQKILSLDYKNYKAEIKTADAQNSHKEGVTV 92 (460)
Q Consensus 14 vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~s~d~q~s~~~gili 92 (460)
=...|++.||.... .+.++|..|..+.+.+.-.+. .+- -.+|.++.....-+..|.+
T Consensus 156 ~i~~FL~tFFk~Y~sa~~~eL~yy~~~~~~l~gL~g------------------~~~----f~~l~~~~vy~~~~~~v~a 213 (261)
T 3ub1_A 156 KITDSVSQFFKAYYEQNQTQIDYFLVDGADIKGAGQ------------------KFS----FNKIDRINIYKLSDKEFLA 213 (261)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHTTBCTTCCCCCCCS------------------CCE----EEEEEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHhcCCCcccCCCC------------------cEE----EEEeccEEEecCCCcEEEE
Confidence 45689999999986 577888877777665432221 011 1223332222222344555
Q ss_pred EEEEEEEcCCCCcccEEEeeeee--ecCCcEEEEc
Q 012564 93 LVTGCLTGKDNLRRKFAQSFFLA--PQDNGYFVLN 125 (460)
Q Consensus 93 ~V~G~~~~~~~~~~~F~q~F~L~--~~~~~y~v~n 125 (460)
.|+ |+..+... +.+|.|.|- .++++|||..
T Consensus 214 ~V~--v~~~d~~t-~~~e~y~L~L~k~~~~w~V~~ 245 (261)
T 3ub1_A 214 IVD--LNVDSFGN-AIKQGFNLTVVQEGDKFLVKT 245 (261)
T ss_dssp EEE--EEEEETTE-EEEEEEEEEEEEETTEEEECC
T ss_pred EEE--EEEcCCCc-eEEEEEEEEEEECCCeEEEEe
Confidence 555 44433222 248888775 4568999854
No 325
>3u5c_h Suppressor protein STM1; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_h
Probab=25.12 E-value=15 Score=34.51 Aligned_cols=37 Identities=14% Similarity=0.166 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCC
Q 012564 383 GRFPSERERFRNDS-FRGRGSYGGGRSFGRNEYGNRVE 419 (460)
Q Consensus 383 g~~~~grgg~~g~~-~rgrg~~gggrg~grg~~~~rg~ 419 (460)
.+.+++|||.++.+ +..||+.|+.||+.++++++..+
T Consensus 219 ~r~~~~rgg~~~~~~~~~rgg~g~~~~~~~~~~~~~~~ 256 (273)
T 3u5c_h 219 RKNFGDRNNNSRNNFNNRRGGRGARKGNNTANATNSAN 256 (273)
T ss_dssp --------------------------------------
T ss_pred cCCCCCCCCccccccCCCcCCcccccCCCCCCCCCCCC
No 326
>4giw_A RUN and SH3 domain-containing protein 1; NGF-TRKA signaling pathway, NF-KB pathway, signaling protein; 2.00A {Homo sapiens}
Probab=21.78 E-value=31 Score=30.66 Aligned_cols=48 Identities=13% Similarity=0.219 Sum_probs=33.6
Q ss_pred HHHHHHHhccCcchhcccccCCceEE-eeCCCCcceeeccHHHHHHH---HhcCCCC
Q 012564 19 VEQYYHILHSTPELVFRFYQDSSVLS-RPDSNGVMTSVTTMEGINQK---ILSLDYK 71 (460)
Q Consensus 19 v~~YY~~l~~~p~~l~~fY~~~S~l~-~~~~~~~~~~~~g~~~I~~~---~~~l~~~ 71 (460)
+..|...|..+++.|.+||.+.|.|. ..+. .-...+.|... |..++|+
T Consensus 133 L~~~l~~l~~~~~~l~~~Y~~~a~lr~s~~~-----~~~l~~~l~~~L~~L~~l~F~ 184 (198)
T 4giw_A 133 LELWFSSLQEDAGLLSLMYMPTGFFSLARGG-----CPSLSTELLLLLQPLSVLTFH 184 (198)
T ss_dssp HHHHHHHHHTCHHHHHHHBCTTSHHHHTSSB-----TTBHHHHHHHHHGGGGGSCCB
T ss_pred HHHHHHHHHhChHHHHHHcCCchHhhccccc-----ChHHHHhhhccccccccccee
Confidence 35699999999999999999999884 1221 22356665555 4556775
No 327
>3eby_A Beta subunit of A putative aromatic-ring-hydroxyl dioxygenase; YP_001165631.1; 1.75A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID} SCOP: d.17.4.4
Probab=20.15 E-value=3.7e+02 Score=22.24 Aligned_cols=70 Identities=14% Similarity=0.112 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHhc-cCcchhcccccCCceEEeeC---C-CCc---ceeeccHHHHHHHHhcC------CCCcceEEEe
Q 012564 13 VVGNAFVEQYYHILH-STPELVFRFYQDSSVLSRPD---S-NGV---MTSVTTMEGINQKILSL------DYKNYKAEIK 78 (460)
Q Consensus 13 ~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~S~l~~~~---~-~~~---~~~~~g~~~I~~~~~~l------~~~~~~~~i~ 78 (460)
.--.+|+..|-..|+ .+-+.+..+|.++..+.... . .+. .....+...|...+..| +..-+.|.|.
T Consensus 14 ~~I~~ll~rya~~lD~~d~d~w~~lft~D~~y~~p~~~~~~~~~~~~~~~~~~~~~l~~rv~~l~~~~~~p~~rt~H~vs 93 (163)
T 3eby_A 14 SAIDDFNAAYGLCLDDDRLEQWPTLFVDDCLYQVIARENVDNGLPAAVMYCDSKGMLADRVVALRKANVFPEHFNRHLIG 93 (163)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGTGGGEEEEEEEEEEEGGGGGSSSCCEEEEESSHHHHHHHHHHHHHTC----CEEEEEEC
T ss_pred HHHHHHHHHHHHHhccccHHHHHHhhcCCEEEEeeccccCCCCCCcEEEEcCCHHHHHHHHHHhhccCCCCCcceeEEEc
Confidence 344679999999999 56688899999999774432 1 111 11235777777666543 3445677777
Q ss_pred eeee
Q 012564 79 TADA 82 (460)
Q Consensus 79 s~d~ 82 (460)
++..
T Consensus 94 n~~i 97 (163)
T 3eby_A 94 RAVI 97 (163)
T ss_dssp CCEE
T ss_pred CEEE
Confidence 7665
No 328
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=20.07 E-value=56 Score=23.73 Aligned_cols=68 Identities=16% Similarity=0.213 Sum_probs=37.0
Q ss_pred EEEEcCCC--CCCCHHHHHHHhhcCCCeeEEE---EEEeCCCCceEEEEEEcCHHHHHHHHHHC-CCCCCCeEEEEEecc
Q 012564 301 SIYIRNLP--DTMTVASLEVEFKKFGPVKQGG---IQVRHNKGYCFGFVEFQSSSSVDNAIQAS-PITIGGQEAFVEKKK 374 (460)
Q Consensus 301 ~lfV~nLp--~~vte~~L~~~F~~~G~v~~~~---i~~~~~~g~g~aFV~F~~~e~a~~Al~~~-~~~i~gr~i~V~~~~ 374 (460)
+||| ++. ..+...+|-.++..-+.|..-. |.+ ...|.||+-... .+..++..+ ...++|+.+.|+.++
T Consensus 2 ~~~i-~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i----~d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYF-NGGKKKKIRAVDFVGTIAKIDGVSADDIGIITI----MDNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEE-SCCCC----CHHHHHHHHTSTTCCGGGEEEEEE----CSSCEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEE-eCCCccCCCHHHHHHHHHHccCCChhhccEEEE----eCCcEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 4566 332 3456677777776555443211 111 234778887654 456677777 788999999988764
Done!