Your job contains 1 sequence.
>012567
MTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAA
ASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASII
GDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTR
AAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQ
DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVIS
IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT
IRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQ
KIGINQNLKPSVCFILNLADSLIIFFPPLFIIWFMSFDRK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 012567
(460 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2025650 - symbol:SIG2 "AT1G08540" species:3702... 1211 3.5e-123 1
TAIR|locus:2057996 - symbol:SIGF "AT2G36990" species:3702... 450 1.5e-42 1
UNIPROTKB|Q84LK8 - symbol:SIG6 "Sig6" species:39947 "Oryz... 439 2.2e-41 1
TIGR_CMR|CHY_0455 - symbol:CHY_0455 "RNA polymerase sigma... 342 2.8e-36 3
TIGR_CMR|BA_4515 - symbol:BA_4515 "RNA polymerase sigma-4... 343 2.1e-34 2
UNIPROTKB|O48655 - symbol:rsigA "Plastid RNA polymerase s... 370 4.6e-34 1
UNIPROTKB|P0A602 - symbol:rpoD "RNA polymerase sigma fact... 365 1.5e-33 1
TIGR_CMR|GSU_3089 - symbol:GSU_3089 "RNA polymerase sigma... 341 1.9e-33 2
TAIR|locus:2084420 - symbol:SIGC "AT3G53920" species:3702... 367 2.1e-33 1
UNIPROTKB|Q59563 - symbol:mysB "RNA polymerase sigma fact... 352 3.7e-32 1
TAIR|locus:2173249 - symbol:SIG4 "AT5G13730" species:3702... 328 5.5e-32 2
TAIR|locus:2010871 - symbol:SIGA "AT1G64860" species:3702... 350 6.0e-32 1
TIGR_CMR|CBU_1596 - symbol:CBU_1596 "RNA polymerase sigma... 316 7.7e-32 3
UNIPROTKB|P00579 - symbol:rpoD species:83333 "Escherichia... 336 8.2e-32 2
TIGR_CMR|CPS_4334 - symbol:CPS_4334 "RNA polymerase sigma... 337 8.4e-32 2
TIGR_CMR|ECH_0760 - symbol:ECH_0760 "RNA polymerase sigma... 333 9.6e-32 2
TIGR_CMR|DET_0551 - symbol:DET_0551 "RNA polymerase sigma... 322 9.9e-32 2
UNIPROTKB|Q9KUK1 - symbol:VC_0517 "RNA polymerase sigma f... 333 1.6e-31 2
TIGR_CMR|VC_0517 - symbol:VC_0517 "RNA polymerase sigma f... 333 1.6e-31 2
TIGR_CMR|APH_0576 - symbol:APH_0576 "RNA polymerase sigma... 343 1.6e-30 1
TIGR_CMR|SO_1284 - symbol:SO_1284 "RNA polymerase sigma-7... 338 5.3e-30 1
TIGR_CMR|SPO_1750 - symbol:SPO_1750 "RNA polymerase sigma... 332 3.0e-29 1
TIGR_CMR|NSE_0312 - symbol:NSE_0312 "RNA polymerase sigma... 304 7.5e-29 2
TIGR_CMR|GSU_1525 - symbol:GSU_1525 "RNA polymerase sigma... 281 9.6e-29 2
TIGR_CMR|CJE_1081 - symbol:CJE_1081 "RNA polymerase sigma... 318 8.4e-28 1
TIGR_CMR|CBU_1669 - symbol:CBU_1669 "RNA polymerase sigma... 266 6.4e-26 2
UNIPROTKB|P13445 - symbol:rpoS "RNA polymerase, sigma S (... 285 4.6e-25 1
TIGR_CMR|SO_3432 - symbol:SO_3432 "RNA polymerase sigma f... 284 5.9e-25 1
TIGR_CMR|VC_0534 - symbol:VC_0534 "RNA polymerase sigma f... 278 2.6e-24 1
TIGR_CMR|CPS_1079 - symbol:CPS_1079 "RNA polymerase sigma... 272 1.1e-23 1
TAIR|locus:2167413 - symbol:SIGE "AT5G24120" species:3702... 256 1.0e-19 1
UNIPROTKB|Q84JN3 - symbol:SIG5 "Os05g0586600 protein" spe... 247 1.2e-18 1
TIGR_CMR|BA_4042 - symbol:BA_4042 "RNA polymerase sigma-G... 197 3.4e-15 1
UNIPROTKB|O32728 - symbol:O32728 "RNA polymerase sigma fa... 192 1.2e-14 1
TIGR_CMR|BA_4294 - symbol:BA_4294 "RNA polymerase sigma-F... 188 3.4e-14 1
TIGR_CMR|CHY_2055 - symbol:CHY_2055 "RNA polymerase sigma... 176 1.3e-11 1
TIGR_CMR|CHY_1959 - symbol:CHY_1959 "RNA polymerase sigma... 165 3.9e-10 1
TIGR_CMR|APH_0759 - symbol:APH_0759 "RNA polymerase sigma... 165 7.6e-10 1
TIGR_CMR|SPO_1409 - symbol:SPO_1409 "RNA polymerase sigma... 161 2.5e-09 1
TIGR_CMR|SPO_0406 - symbol:SPO_0406 "RNA polymerase sigma... 159 4.0e-09 1
TIGR_CMR|GSU_0655 - symbol:GSU_0655 "RNA polymerase sigma... 151 1.1e-08 2
UNIPROTKB|P50511 - symbol:rpoH "RNA polymerase sigma-32 f... 155 1.1e-08 1
TIGR_CMR|VC_0150 - symbol:VC_0150 "RNA polymerase sigma-3... 155 1.1e-08 1
TIGR_CMR|ECH_0655 - symbol:ECH_0655 "RNA polymerase sigma... 151 3.7e-08 1
TIGR_CMR|CPS_1519 - symbol:CPS_1519 "motility sigma facto... 146 5.7e-08 1
UNIPROTKB|P0AGB3 - symbol:rpoH species:83333 "Escherichia... 145 1.6e-07 1
UNIPROTKB|Q7D5S2 - symbol:sigF "Alternative RNA polymeras... 141 3.4e-07 1
TIGR_CMR|SO_4583 - symbol:SO_4583 "RNA polymerase sigma-3... 137 1.3e-06 1
TIGR_CMR|CBU_1909 - symbol:CBU_1909 "RNA polymerase sigma... 134 3.0e-06 1
TIGR_CMR|CPS_0161 - symbol:CPS_0161 "RNA polymerase sigma... 133 3.8e-06 1
UNIPROTKB|Q9KQD4 - symbol:VC_2066 "RNA polymerase sigma f... 130 5.2e-06 1
TIGR_CMR|VC_2066 - symbol:VC_2066 "RNA polymerase sigma f... 130 5.2e-06 1
TIGR_CMR|CHY_2056 - symbol:CHY_2056 "RNA polymerase sigma... 127 1.0e-05 1
TIGR_CMR|NSE_0341 - symbol:NSE_0341 "RNA polymerase sigma... 129 1.1e-05 1
TIGR_CMR|SO_3210 - symbol:SO_3210 "RNA polymerase sigma-2... 124 2.4e-05 1
UNIPROTKB|P0AEM6 - symbol:fliA "RNA polymerase, sigma 28 ... 122 4.2e-05 1
UNIPROTKB|Q9K5J6 - symbol:sigB "RNA polymerase sigma-B fa... 122 5.2e-05 1
TIGR_CMR|BA_0992 - symbol:BA_0992 "RNA polymerase sigma-B... 122 5.2e-05 1
TIGR_CMR|BA_4566 - symbol:BA_4566 "RNA polymerase sigma-2... 118 0.00012 1
UNIPROTKB|O83707 - symbol:TP_0709 "RNA polymerase sigma f... 119 0.00012 1
TIGR_CMR|GSU_3053 - symbol:GSU_3053 "RNA polymerase sigma... 118 0.00014 1
TIGR_CMR|BA_4043 - symbol:BA_4043 "RNA polymerase sigma-2... 116 0.00021 1
>TAIR|locus:2025650 [details] [associations]
symbol:SIG2 "AT1G08540" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0071482 "cellular response to light stimulus"
evidence=IEP;IMP] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=IDA;TAS] [GO:0009658 "chloroplast
organization" evidence=IMP] [GO:0006399 "tRNA metabolic process"
evidence=IMP] [GO:0001053 "plastid sigma factor activity"
evidence=IMP] [GO:2001141 "regulation of RNA biosynthetic process"
evidence=IMP] [GO:0009637 "response to blue light"
evidence=IGI;RCA] [GO:0010114 "response to red light"
evidence=IEP;RCA] [GO:0006098 "pentose-phosphate shunt"
evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010218
"response to far red light" evidence=RCA] [GO:0016117 "carotenoid
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0034660 "ncRNA metabolic process" evidence=RCA]
[GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00716
EMBL:CP002684 GO:GO:0009507 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009637
GO:GO:0010114 GO:GO:0009658 EMBL:AC006932 GO:GO:0006399
EMBL:AC003981 GO:GO:0071482 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 UniGene:At.23349 HSSP:Q9EZJ8
GO:GO:0001053 EMBL:AB004293 EMBL:AB019943 EMBL:AB004820
EMBL:AF015543 EMBL:Y15362 EMBL:AK118947 EMBL:BT030346
IPI:IPI00546921 PIR:T00707 RefSeq:NP_172330.1
ProteinModelPortal:O22056 SMR:O22056 STRING:O22056 PRIDE:O22056
EnsemblPlants:AT1G08540.1 GeneID:837376 KEGG:ath:AT1G08540
TAIR:At1g08540 InParanoid:O22056 OMA:WIKQAVR PhylomeDB:O22056
ProtClustDB:CLSN2682814 Genevestigator:O22056 InterPro:IPR016262
PIRSF:PIRSF000767 Uniprot:O22056
Length = 572
Score = 1211 (431.4 bits), Expect = 3.5e-123, P = 3.5e-123
Identities = 254/434 (58%), Positives = 297/434 (68%)
Query: 1 MTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTXXXXXXXX 60
+T++LDV KLRLPS + S+++ ++RQWTY GPSTE +LA+ETL
Sbjct: 49 LTSMLDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVV 108
Query: 61 XXXXXXXXXXXXXXXXXXXXXMVNHHNXXXXXXXXXXXXXXDTNTSMWAQLTERERASII 120
+ + N S W Q TE+ERA I+
Sbjct: 109 AAAAEAVALARAAVKVAKDATLFKNSNNTNLLTSSTAD-----KRSKWDQFTEKERAGIL 163
Query: 121 GDSVIVEAAPEEEYSEQQPLNKSA--DLEPT-HEELKLLEEQVSQSIAVRSXXXXXXXXX 177
G + + + NK + DLE EE++LLEEQ S S+AVRS
Sbjct: 164 GHLAVSDNGIVSDKITASASNKESIGDLESEKQEEVELLEEQPSVSLAVRSTRQTERKAR 223
Query: 178 XXXXXXXXXXNVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSA 237
+ SVK+GS+ ++KR QEVD++DPLRYLR TTSSS+LLT EE +LSA
Sbjct: 224 RAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSA 283
Query: 238 GIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRL 297
GIQDLLKLE L+ L+ER G PTFAQWA+AAGVDQ+ LR+R+++G LCKDKMI SNIRL
Sbjct: 284 GIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRL 343
Query: 298 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 357
VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAVRKSLSDQ
Sbjct: 344 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQ 403
Query: 358 SRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRS 417
SR IRLPFHMVEATYRVKEARKQLYSE G+HP NEE+AEATGLSMKRL AVLLSPK PRS
Sbjct: 404 SRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRS 463
Query: 418 LDQKIGINQNLKPS 431
LDQKIG+NQNLKPS
Sbjct: 464 LDQKIGMNQNLKPS 477
>TAIR|locus:2057996 [details] [associations]
symbol:SIGF "AT2G36990" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=TAS]
[GO:0009507 "chloroplast" evidence=IDA] [GO:0009536 "plastid"
evidence=IDA] [GO:0016987 "sigma factor activity" evidence=ISS;IDA]
[GO:0071483 "cellular response to blue light" evidence=IEP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA;IMP] [GO:0071482 "cellular response to light stimulus"
evidence=IMP] [GO:0090351 "seedling development" evidence=IMP]
[GO:0001053 "plastid sigma factor activity" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0009965 "leaf
morphogenesis" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0016117 "carotenoid biosynthetic
process" evidence=RCA] [GO:0019288 "isopentenyl diphosphate
biosynthetic process, mevalonate-independent pathway" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0009507 GO:GO:0045893
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AC006922
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 GO:GO:0090351
eggNOG:COG0568 HSSP:Q9EZJ8 GO:GO:0001053 InterPro:IPR016262
PIRSF:PIRSF000767 GO:GO:0071483 EMBL:AB029916 EMBL:AJ277389
EMBL:AY059768 EMBL:AY091182 EMBL:AJ250812 IPI:IPI00546728
PIR:B84787 PIR:T52653 RefSeq:NP_565856.1 UniGene:At.1453
ProteinModelPortal:Q9LD95 SMR:Q9LD95 IntAct:Q9LD95 STRING:Q9LD95
PaxDb:Q9LD95 PRIDE:Q9LD95 EnsemblPlants:AT2G36990.1 GeneID:818273
KEGG:ath:AT2G36990 GeneFarm:23 TAIR:At2g36990 InParanoid:Q9LD95
OMA:HIAKQYQ PhylomeDB:Q9LD95 ProtClustDB:CLSN2688741
Genevestigator:Q9LD95 Uniprot:Q9LD95
Length = 547
Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
Identities = 94/231 (40%), Positives = 140/231 (60%)
Query: 197 TSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERC 256
TS +K+ Q D D L+ + +LLTA EE +L + IQ LLKLE ++ L +
Sbjct: 219 TSAKKKYK-QGADNDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQN 277
Query: 257 GGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLV 316
G PT +WA A G+ L+ ++ G ++K+IT+N+RLV+ IAK YQ G+N QDL+
Sbjct: 278 GCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLL 337
Query: 317 QEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKE 376
QEG GL++ EKF G +F+TYA+WWI+Q++RKS+ SRTIRLP ++ +V E
Sbjct: 338 QEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSE 397
Query: 377 ARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
ARK E P+ EE+A G+S ++L +L + + P S+ Q I +Q+
Sbjct: 398 ARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQD 448
>UNIPROTKB|Q84LK8 [details] [associations]
symbol:SIG6 "Sig6" species:39947 "Oryza sativa Japonica
Group" [GO:0009536 "plastid" evidence=RCA] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AP008214 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 HSSP:Q9EZJ8 InterPro:IPR016262 PIRSF:PIRSF000767
OMA:HIAKQYQ ProtClustDB:CLSN2688741 EMBL:AB096012 EMBL:AP005249
EMBL:AP005478 EMBL:AK099922 RefSeq:NP_001061343.1 UniGene:Os.27634
STRING:Q84LK8 EnsemblPlants:LOC_Os08g14450.1 GeneID:4345044
KEGG:osa:4345044 HOGENOM:HOG000070749 Uniprot:Q84LK8
Length = 572
Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
Identities = 96/281 (34%), Positives = 147/281 (52%)
Query: 143 SADLEPTHEELKLLEEQVSQSIAVRSXXXXXXXXXXXXXXXXXXXNVMSVKSGSTSRRKR 202
S D ++EEL Q + VRS +V S + K
Sbjct: 194 SVDSSKSNEEL-----QSKGQVFVRSTRLLERRSKRRYAPRASIADVSCSADNSKKKEKS 248
Query: 203 PSVQEV-DYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPT 261
V + +P + ++ LTA EE L + IQ L+K+E L +CG PT
Sbjct: 249 KKYGRVLEPDEPFKLFLRDRETTEFLTAKEERHLFSKIQILMKIEEAHRKLEVQCGREPT 308
Query: 262 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCR 321
A+WA A G+ +EL+ + G C++KM SN RLVI +A+ Y+G G+++QDLVQ+GC
Sbjct: 309 LAEWAEAVGMSSKELQSSIRTGRRCREKMARSNFRLVIHVARKYEGYGLDIQDLVQDGCS 368
Query: 322 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL 381
GL++ EKF+ SKG +F TYA+WWI+Q+++KS+ SR IRLP + +V +AR +
Sbjct: 369 GLMKTFEKFNPSKGCRFPTYAYWWIRQSIKKSIFKNSRLIRLPESVYALLRKVGKARMEC 428
Query: 382 YSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKI 422
E G P N VA G+++++L + + PRS+ +
Sbjct: 429 IME-GEQPTNANVARRAGITIEKLAKLRAKTRKPRSMQDHV 468
>TIGR_CMR|CHY_0455 [details] [associations]
symbol:CHY_0455 "RNA polymerase sigma factor RpoD"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007127 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 HOGENOM:HOG000270273
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
eggNOG:COG0568 KO:K03086 TIGRFAMs:TIGR02393 RefSeq:YP_359316.1
ProteinModelPortal:Q3AEW8 SMR:Q3AEW8 STRING:Q3AEW8 GeneID:3727139
KEGG:chy:CHY_0455 PATRIC:21274071 OMA:IDTIEDT ProtClustDB:PRK09210
BioCyc:CHYD246194:GJCN-456-MONOMER Uniprot:Q3AEW8
Length = 370
Score = 342 (125.4 bits), Expect = 2.8e-36, Sum P(3) = 2.8e-36
Identities = 68/153 (44%), Positives = 99/153 (64%)
Query: 272 DQRELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
++ EL +R G K K+ +N+RLV+SIAK Y G GM DL+QEG GL++ EKF
Sbjct: 118 EEIELAKRKEEGDEEAKRKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKF 177
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ + L E GR P
Sbjct: 178 DYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRNLLQELGREPT 237
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
EE+A+ G+S ++ ++ + P SL+ IG
Sbjct: 238 PEEIAKEMGISEDKVREIMKIAQEPVSLETPIG 270
Score = 38 (18.4 bits), Expect = 2.8e-36, Sum P(3) = 2.8e-36
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 125 IVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAV 166
+V PE E L+ D +P+ + L+ + + IA+
Sbjct: 56 VVPEIPELELDSINSLDDDVDFKPSDIDEVDLDLTIPEGIAI 97
Score = 37 (18.1 bits), Expect = 2.8e-36, Sum P(3) = 2.8e-36
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLS 236
DP+R LLT EE++L+
Sbjct: 99 DPVRMYLKEIGRVPLLTPEEEIELA 123
>TIGR_CMR|BA_4515 [details] [associations]
symbol:BA_4515 "RNA polymerase sigma-43 factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF03979 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 KO:K03086 TIGRFAMs:TIGR02393 HSSP:Q9EZJ8
ProtClustDB:PRK09210 RefSeq:NP_846739.1 RefSeq:YP_021160.1
RefSeq:YP_030442.1 ProteinModelPortal:Q81LU5 SMR:Q81LU5
IntAct:Q81LU5 DNASU:1088240 EnsemblBacteria:EBBACT00000011556
EnsemblBacteria:EBBACT00000017175 EnsemblBacteria:EBBACT00000020140
GeneID:1088240 GeneID:2819028 GeneID:2852221 KEGG:ban:BA_4515
KEGG:bar:GBAA_4515 KEGG:bat:BAS4194 OMA:AERMSSF
BioCyc:BANT260799:GJAJ-4250-MONOMER
BioCyc:BANT261594:GJ7F-4392-MONOMER Uniprot:Q81LU5
Length = 373
Score = 343 (125.8 bits), Expect = 2.1e-34, Sum P(2) = 2.1e-34
Identities = 64/137 (46%), Positives = 94/137 (68%)
Query: 287 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI 346
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WWI
Sbjct: 137 KRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWWI 196
Query: 347 KQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLH 406
+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+ EE+ E L+ +++
Sbjct: 197 RQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLAPEKVR 256
Query: 407 AVLLSPKAPRSLDQKIG 423
+L + P SL+ IG
Sbjct: 257 EILKIAQEPVSLETPIG 273
Score = 46 (21.3 bits), Expect = 2.1e-34, Sum P(2) = 2.1e-34
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 208 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQD 241
V +DP+R LL+A EE++L+ I++
Sbjct: 98 VKINDPVRMYLKEIGRVDLLSAEEEIRLATRIEE 131
>UNIPROTKB|O48655 [details] [associations]
symbol:rsigA "Plastid RNA polymerase sigma factor"
species:39947 "Oryza sativa Japonica Group" [GO:0009416 "response
to light stimulus" evidence=IEP] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 GO:GO:0009507 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009416
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HSSP:Q9EZJ8 EMBL:AB005290 ProteinModelPortal:O48655 STRING:O48655
KEGG:dosa:Os08t0163400-01 Gramene:O48655 Uniprot:O48655
Length = 519
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 80/206 (38%), Positives = 123/206 (59%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR T S LLT + + LS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 207 YLRGTVSKE-LLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPPE 265
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 335
LR R++ L ++ + SN+RLVISIA+ Y G+ L DL+Q G GL+RG EKFDAS+G
Sbjct: 266 LRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRG 325
Query: 336 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVA 395
F+ STY +WWI+Q V ++L++ S+T RLP ++ E ++ A+ +L + G P E +A
Sbjct: 326 FRISTYVYWWIRQGVSRALAENSKTFRLPTYLHERLIAIRGAKYEL-EDQGIAPTIENIA 384
Query: 396 EATGLSMKRLHAVLLSPKAPRSLDQK 421
+ +S K++ + SLDQ+
Sbjct: 385 GSLNISEKKVLNATEAVNKVLSLDQQ 410
>UNIPROTKB|P0A602 [details] [associations]
symbol:rpoD "RNA polymerase sigma factor RpoD" species:1773
"Mycobacterium tuberculosis" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005618 "cell wall" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0009405 "pathogenesis" evidence=IMP] [GO:0009415
"response to water stimulus" evidence=IEP] [GO:0016987 "sigma
factor activity" evidence=IDA] [GO:0040007 "growth" evidence=IMP]
[GO:0052572 "response to host immune response" evidence=IEP]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 GO:GO:0009405 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842580 GO:GO:0003677 GO:GO:0052572
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
HOGENOM:HOG000270273 GO:GO:0016987 GO:GO:0009415 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568 KO:K03086
TIGRFAMs:TIGR02393 EMBL:U10059 EMBL:U21134 PIR:B70531
RefSeq:NP_217219.1 RefSeq:NP_337278.1 RefSeq:YP_006516147.1
ProteinModelPortal:P0A602 SMR:P0A602 PRIDE:P0A602
EnsemblBacteria:EBMYCT00000003025 EnsemblBacteria:EBMYCT00000070252
GeneID:13319430 GeneID:887477 GeneID:925521 KEGG:mtc:MT2777
KEGG:mtu:Rv2703 KEGG:mtv:RVBD_2703 PATRIC:18127848
TubercuList:Rv2703 OMA:LMSEMAE ProtClustDB:PRK05901 Uniprot:P0A602
Length = 528
Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 86/226 (38%), Positives = 133/226 (58%)
Query: 199 RRKRPSVQEVDYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG 257
R+ R + +D +R YL+ + LL A EE++L+ I+ L L LSER
Sbjct: 213 RQARKDAELTASADSVRAYLKQIGKVA-LLNAEEEVELAKRIEAGLYATQLMTELSERGE 271
Query: 258 GSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
P AQ +R++ G K+ ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 272 KLPA-AQ--------RRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 322
Query: 318 EGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEA 377
EG GL+R EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++
Sbjct: 323 EGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRI 382
Query: 378 RKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
+++L + GR P EE+A+ ++ +++ + + P SLDQ IG
Sbjct: 383 QRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIG 428
>TIGR_CMR|GSU_3089 [details] [associations]
symbol:GSU_3089 "RNA polymerase sigma factor RpoD"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF03979 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
RefSeq:NP_954130.1 ProteinModelPortal:Q748B8 SMR:Q748B8
GeneID:2686774 KEGG:gsu:GSU3089 PATRIC:22029033 OMA:REMGSVS
ProtClustDB:CLSK924660 BioCyc:GSUL243231:GH27-3063-MONOMER
Uniprot:Q748B8
Length = 577
Score = 341 (125.1 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
Identities = 62/139 (44%), Positives = 94/139 (67%)
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
L K +++ +N+RLV+SIAK Y G+ DL+QEG GL++ +KF+ +G+KFSTYA W
Sbjct: 339 LAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATW 398
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+QA+ ++++DQ+RTIR+P HM+E ++ +QL E GR P+ EE+AE L + +
Sbjct: 399 WIRQAITRAIADQARTIRIPVHMIETINKLIRTSRQLVQEIGREPSPEEIAERMNLPLDK 458
Query: 405 LHAVLLSPKAPRSLDQKIG 423
+ VL K P SL+ IG
Sbjct: 459 VRKVLKIAKEPISLETPIG 477
Score = 49 (22.3 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQD 241
SDP+R YLR S S LLT E++++ I++
Sbjct: 94 SDPVRMYLREMGSVS-LLTREGEVEIAKRIEE 124
>TAIR|locus:2084420 [details] [associations]
symbol:SIGC "AT3G53920" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS;IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0019685 "photosynthesis, dark reaction"
evidence=NAS] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IDA;TAS] [GO:0071482 "cellular response to light stimulus"
evidence=IEP] [GO:0001053 "plastid sigma factor activity"
evidence=IMP] [GO:2001141 "regulation of RNA biosynthetic process"
evidence=IMP] [GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0009507 EMBL:CP002686 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AL132960 GO:GO:0003899 GO:GO:0071482 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568 HSSP:Q9EZJ8
GO:GO:0001053 InterPro:IPR016262 PIRSF:PIRSF000767 EMBL:D89994
EMBL:AB019944 EMBL:AB004822 EMBL:AF015544 EMBL:BT030362
EMBL:AY128331 IPI:IPI00530485 PIR:T45932 RefSeq:NP_190960.1
UniGene:At.21270 ProteinModelPortal:O24621 SMR:O24621 STRING:O24621
PRIDE:O24621 EnsemblPlants:AT3G53920.1 GeneID:824559
KEGG:ath:AT3G53920 GeneFarm:26 TAIR:At3g53920 InParanoid:O24621
KO:K03093 OMA:WIRKSMS PhylomeDB:O24621 ProtClustDB:CLSN2685061
Genevestigator:O24621 Uniprot:O24621
Length = 571
Score = 367 (134.2 bits), Expect = 2.1e-33, P = 2.1e-33
Identities = 68/196 (34%), Positives = 128/196 (65%)
Query: 229 ANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKD 288
+ E ++S G++ + +E +R L E G + + WAAAAG++++ L R L+YG C+D
Sbjct: 275 SRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRD 334
Query: 289 KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ 348
+++ S LV+ +A+NY+G G+ +DL+Q G G+++GAE+FD ++G+KFSTY +WI++
Sbjct: 335 ELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRK 394
Query: 349 AVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHA 407
++ +S +R + +P ++ +++ARK L + +G ++ +EE+A+ TG S+K++ A
Sbjct: 395 SMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRA 454
Query: 408 VLLSPKAPRSLDQKIG 423
K S+D+K+G
Sbjct: 455 ANQCLKVVGSIDKKVG 470
>UNIPROTKB|Q59563 [details] [associations]
symbol:mysB "RNA polymerase sigma factor" species:1773
"Mycobacterium tuberculosis" [GO:0001666 "response to hypoxia"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009408 "response to heat"
evidence=IEP] [GO:0009410 "response to xenobiotic stimulus"
evidence=IEP] [GO:0016987 "sigma factor activity" evidence=IGI]
[GO:0019217 "regulation of fatty acid metabolic process"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] [GO:0043175 "RNA
polymerase core enzyme binding" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0050708 "regulation of protein secretion" evidence=IDA]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0005829 GO:GO:0005886 GO:GO:0040007
GO:GO:0045893 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842580 GO:GO:0003677 GO:GO:0001666
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0019217 GO:GO:0009408 GO:GO:0009410 GO:GO:0050708
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 GO:GO:0043175 EMBL:U10059 KO:K03087 HSSP:Q9EZJ8
EMBL:AL123456 PIR:JC5011 RefSeq:NP_217226.1 RefSeq:NP_337285.1
RefSeq:YP_006516154.1 SMR:Q59563 EnsemblBacteria:EBMYCT00000003840
EnsemblBacteria:EBMYCT00000072906 GeneID:13319437 GeneID:888580
GeneID:925516 KEGG:mtc:MT2783 KEGG:mtu:Rv2710 KEGG:mtv:RVBD_2710
PATRIC:18127862 TubercuList:Rv2710 OMA:DHARDPV ProtClustDB:PRK07921
Uniprot:Q59563
Length = 323
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 65/151 (43%), Positives = 102/151 (67%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 73 KRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 132
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++++ GR +E
Sbjct: 133 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREATDE 192
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
E+A +G+ + +++ +L + P SLD +G
Sbjct: 193 ELAAESGIPIDKINDLLEHSRDPVSLDMPVG 223
>TAIR|locus:2173249 [details] [associations]
symbol:SIG4 "AT5G13730" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=TAS] [GO:0016987 "sigma factor activity" evidence=ISS]
[GO:0071482 "cellular response to light stimulus" evidence=IEP]
[GO:0001053 "plastid sigma factor activity" evidence=IMP]
[GO:2001141 "regulation of RNA biosynthetic process" evidence=IMP]
[GO:0000023 "maltose metabolic process" evidence=RCA] [GO:0006098
"pentose-phosphate shunt" evidence=RCA] [GO:0016556 "mRNA
modification" evidence=RCA] [GO:0019252 "starch biosynthetic
process" evidence=RCA] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 EMBL:CP002688
GO:GO:0009507 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AB006704 GO:GO:0071482
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HSSP:Q9EZJ8 GO:GO:0001053 EMBL:AF101075 EMBL:AB021119 EMBL:AY059907
EMBL:AY114689 IPI:IPI00548771 PIR:T51715 RefSeq:NP_196877.1
UniGene:At.43777 UniGene:At.49018 ProteinModelPortal:Q9ZSL6
SMR:Q9ZSL6 STRING:Q9ZSL6 PRIDE:Q9ZSL6 EnsemblPlants:AT5G13730.1
GeneID:831218 KEGG:ath:AT5G13730 GeneFarm:27 TAIR:At5g13730
InParanoid:Q9ZSL6 OMA:PENMVKR PhylomeDB:Q9ZSL6
ProtClustDB:CLSN2687040 Genevestigator:Q9ZSL6 Uniprot:Q9ZSL6
Length = 419
Score = 328 (120.5 bits), Expect = 5.5e-32, Sum P(2) = 5.5e-32
Identities = 80/204 (39%), Positives = 117/204 (57%)
Query: 222 SSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLN 281
S S L+ EE+QL +++ KLE L + E A+G R ++R
Sbjct: 118 SRSGFLSRLEEVQLCLYLKEGAKLENLGTSVEEN-----EMVSVLLASG---RGKKKRSA 169
Query: 282 YGILCKDKMITSNI-----RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF 336
ILC+ K I RLV+SIA YQG G+NLQDL+QEG GL+RGAE+FD +G+
Sbjct: 170 NEILCRRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGY 229
Query: 337 KFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAE 396
K STY +WWIKQA+ ++++ +SR ++LP M E T +V EA L + R P+ EE+AE
Sbjct: 230 KLSTYVYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAE 289
Query: 397 ATGLSMKRLHAVLLSPKAPRSLDQ 420
L++ + + ++P SLD+
Sbjct: 290 HLNLNVSAVRLAVERSRSPVSLDR 313
Score = 38 (18.4 bits), Expect = 5.5e-32, Sum P(2) = 5.5e-32
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 36 PSTEENLGTSLATETLT 52
P EEN G ET++
Sbjct: 95 PEEEENAGVEAEAETIS 111
>TAIR|locus:2010871 [details] [associations]
symbol:SIGA "AT1G64860" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS;IDA] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0071482 "cellular response to light stimulus"
evidence=IEP] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IDA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0001053 "plastid sigma factor activity" evidence=IMP]
[GO:2001141 "regulation of RNA biosynthetic process" evidence=IMP]
[GO:0071461 "cellular response to redox state" evidence=IDA]
[GO:0080005 "photosystem stoichiometry adjustment" evidence=IDA]
[GO:0006833 "water transport" evidence=RCA] [GO:0009651 "response
to salt stress" evidence=RCA] [GO:0009750 "response to fructose
stimulus" evidence=RCA] [GO:0016987 "sigma factor activity"
evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 EMBL:CP002684
GO:GO:0009507 GO:GO:0006355 GO:GO:0003677 GO:GO:0071461
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AC006193 GO:GO:0071482 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 GO:GO:0080005 eggNOG:COG0568 KO:K03086
EMBL:D89993 EMBL:AB019942 EMBL:AB004821 EMBL:AF015542 EMBL:Y14252
EMBL:AF024590 EMBL:AF325036 EMBL:AY062526 EMBL:AY093306
EMBL:AK316773 EMBL:Y14567 IPI:IPI00521776 IPI:IPI00991957
PIR:H96671 PIR:T52642 RefSeq:NP_001185314.1 RefSeq:NP_176666.1
UniGene:At.25556 HSSP:Q9EZJ8 ProteinModelPortal:O24629 SMR:O24629
IntAct:O24629 STRING:O24629 PRIDE:O24629 EnsemblPlants:AT1G64860.1
GeneID:842794 KEGG:ath:AT1G64860 GeneFarm:25 TAIR:At1g64860
InParanoid:O24629 OMA:DHKSRLK ProtClustDB:CLSN2679344
Genevestigator:O24629 GO:GO:0001053 Uniprot:O24629
Length = 502
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 80/218 (36%), Positives = 128/218 (58%)
Query: 204 SVQEVDYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTF 262
+V +V +R Y++ S +L+ E ++LS I+ L+L+ + L +R G P+
Sbjct: 177 AVSDVSSGKQVRGYVKGVISED-VLSHVEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPSD 235
Query: 263 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 322
Q A + + + EL+ L L ++K+ SN+RLV+SIA+ Y G + DLVQ G G
Sbjct: 236 EQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIG 295
Query: 323 LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLY 382
L+RG EKFD+SKGF+ STY +WWI+Q V ++L D SRT+RLP H+ E ++ A+ +L
Sbjct: 296 LLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL- 354
Query: 383 SENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQ 420
E G P+ + +AE+ +S K++ + SLD+
Sbjct: 355 QEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDR 392
>TIGR_CMR|CBU_1596 [details] [associations]
symbol:CBU_1596 "RNA polymerase sigma factor RpoD"
species:227377 "Coxiella burnetii RSA 493" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568 EMBL:AF273254
RefSeq:NP_820579.1 HSSP:P00579 ProteinModelPortal:Q83BB6 SMR:Q83BB6
PRIDE:Q83BB6 GeneID:1209506 KEGG:cbu:CBU_1596 PATRIC:17931957
HOGENOM:HOG000270272 KO:K03086 OMA:IEMNTDH ProtClustDB:CLSK914891
BioCyc:CBUR227377:GJ7S-1575-MONOMER TIGRFAMs:TIGR02393
Uniprot:Q83BB6
Length = 698
Score = 316 (116.3 bits), Expect = 7.7e-32, Sum P(3) = 7.7e-32
Identities = 62/158 (39%), Positives = 98/158 (62%)
Query: 274 RELRRRLNYGIL----CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
+E+ RR+ G K +MI +N+RLVISIAK Y G+ DL+QEG GL++ +K
Sbjct: 442 KEINRRVAIGEAKSRRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK 501
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
F+ +G+KFSTYA WWI+QA+ +S++DQ+RTIR+P HM+E ++ +Q+ E G
Sbjct: 502 FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQILQETGIEA 561
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
EE+ + +++ VL K P S++ IG +++
Sbjct: 562 TPEELGRRMDMPEEKVRKVLKIAKEPISMETPIGEDED 599
Score = 46 (21.3 bits), Expect = 7.7e-32, Sum P(3) = 7.7e-32
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 207 EVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL 252
E +DP+R S LLT E+ ++ I+ EG+R+V+
Sbjct: 180 ETRTTDPVRMYMREMGSVELLTREGEIVIAKRIE-----EGIRQVM 220
Score = 38 (18.4 bits), Expect = 7.7e-32, Sum P(3) = 7.7e-32
Identities = 15/63 (23%), Positives = 34/63 (53%)
Query: 106 SMWAQLTERERASIIGDSVIV-EAAPEEEYSE--QQPLNKSADLEPTHEELKLLEEQVSQ 162
S+ ++L +RA SV V + ++E ++ QPL K+A+ +P+ + + ++ +
Sbjct: 31 SVKSKLKTVKRAPAKPKSVTVAKTKSKKEKAKVVSQPLPKTAEKKPSAPPSETQQPKIGE 90
Query: 163 SIA 165
+ A
Sbjct: 91 NAA 93
>UNIPROTKB|P00579 [details] [associations]
symbol:rpoD species:83333 "Escherichia coli K-12"
[GO:0016987 "sigma factor activity" evidence=IEA;IDA] [GO:0009408
"response to heat" evidence=IEP] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000943 InterPro:IPR007127 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR007631
InterPro:IPR009042 InterPro:IPR012760 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0009408 EMBL:U28379 PDB:1TLH PDBsum:1TLH GO:GO:0016987
PDB:3IYD PDBsum:3IYD SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 EMBL:J01687 PDB:3T72 PDBsum:3T72 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 OMA:IEMNTDH TIGRFAMs:TIGR02393
PIR:A65095 RefSeq:NP_417539.1 RefSeq:YP_491259.1 PDB:1SIG PDB:2P7V
PDBsum:1SIG PDBsum:2P7V ProteinModelPortal:P00579 SMR:P00579
DIP:DIP-10773N IntAct:P00579 MINT:MINT-1220595 PaxDb:P00579
PRIDE:P00579 EnsemblBacteria:EBESCT00000001124
EnsemblBacteria:EBESCT00000001125 EnsemblBacteria:EBESCT00000001126
EnsemblBacteria:EBESCT00000001127 EnsemblBacteria:EBESCT00000001128
EnsemblBacteria:EBESCT00000001129 EnsemblBacteria:EBESCT00000001130
EnsemblBacteria:EBESCT00000017672 GeneID:12932074 GeneID:947567
KEGG:ecj:Y75_p2993 KEGG:eco:b3067 PATRIC:32121550 EchoBASE:EB0889
EcoGene:EG10896 ProtClustDB:PRK05658 BioCyc:EcoCyc:RPOD-MONOMER
BioCyc:ECOL316407:JW3039-MONOMER BioCyc:MetaCyc:RPOD-MONOMER
BindingDB:P00579 ChEMBL:CHEMBL5329 EvolutionaryTrace:P00579
Genevestigator:P00579 Uniprot:P00579
Length = 613
Score = 336 (123.3 bits), Expect = 8.2e-32, Sum P(2) = 8.2e-32
Identities = 65/162 (40%), Positives = 105/162 (64%)
Query: 271 VDQ-RELRRRLNYGIL----CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 325
++Q +++ RR++ G K +M+ +N+RLVISIAK Y G+ DL+QEG GL++
Sbjct: 355 IEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK 414
Query: 326 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSEN 385
+KF+ +G+KFSTYA WWI+QA+ +S++DQ+RTIR+P HM+E ++ +Q+ E
Sbjct: 415 AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEM 474
Query: 386 GRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
GR P EE+AE + ++ VL K P S++ IG +++
Sbjct: 475 GREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDED 516
Score = 41 (19.5 bits), Expect = 8.2e-32, Sum P(2) = 8.2e-32
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQD 241
+DP+R + LLT E+ ++ I+D
Sbjct: 95 TDPVRMYMREMGTVELLTREGEIDIAKRIED 125
>TIGR_CMR|CPS_4334 [details] [associations]
symbol:CPS_4334 "RNA polymerase sigma-70 factor"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 OMA:IEMNTDH TIGRFAMs:TIGR02393
RefSeq:YP_270983.1 ProteinModelPortal:Q47W39 SMR:Q47W39
STRING:Q47W39 GeneID:3522880 KEGG:cps:CPS_4334 PATRIC:21471513
BioCyc:CPSY167879:GI48-4343-MONOMER Uniprot:Q47W39
Length = 616
Score = 337 (123.7 bits), Expect = 8.4e-32, Sum P(2) = 8.4e-32
Identities = 64/158 (40%), Positives = 102/158 (64%)
Query: 274 RELRRRLNYGIL----CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
+++ RR++ G K +M+ +N+RLVISIAK Y G+ DL+QEG GL++ +K
Sbjct: 361 KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK 420
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
F+ +G+KFSTYA WWI+QA+ +S++DQ+RTIR+P HM+E ++ +Q+ E GR P
Sbjct: 421 FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRVSRQMLQEMGREP 480
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
EE+AE + ++ VL K P S++ IG +++
Sbjct: 481 TPEELAERMVMPEDKIRKVLKIAKEPISMETPIGDDED 518
Score = 40 (19.1 bits), Expect = 8.4e-32, Sum P(2) = 8.4e-32
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREV 251
+DP+R + LLT E+ ++ I+ EG++EV
Sbjct: 95 TDPVRMYMREMGTVELLTRKGEIVIAKRIE-----EGIKEV 130
>TIGR_CMR|ECH_0760 [details] [associations]
symbol:ECH_0760 "RNA polymerase sigma factor RpoD"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
RefSeq:YP_507558.1 ProteinModelPortal:Q2GG75 SMR:Q2GG75
STRING:Q2GG75 GeneID:3927201 KEGG:ech:ECH_0760 PATRIC:20576954
OMA:KISFICE ProtClustDB:CLSK749621
BioCyc:ECHA205920:GJNR-763-MONOMER Uniprot:Q2GG75
Length = 622
Score = 333 (122.3 bits), Expect = 9.6e-32, Sum P(2) = 9.6e-32
Identities = 59/137 (43%), Positives = 92/137 (67%)
Query: 287 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI 346
K +MI +N+RLV+SIAK Y G+ DLVQEG GL++ +KFD +G+KFSTYA WW+
Sbjct: 386 KQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEGNIGLMKAVDKFDYKRGYKFSTYATWWV 445
Query: 347 KQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLH 406
+QA+ ++++DQ+RTIR+P HM+E ++ +Q+ E GR P EE++ +++ ++
Sbjct: 446 RQAITRAIADQARTIRIPVHMIETVNKINRTLRQMLHEMGREPTLEELSARLNINVDKIR 505
Query: 407 AVLLSPKAPRSLDQKIG 423
V+ K P SL+ IG
Sbjct: 506 KVMKIVKDPVSLESPIG 522
Score = 44 (20.5 bits), Expect = 9.6e-32, Sum P(2) = 9.6e-32
Identities = 17/65 (26%), Positives = 30/65 (46%)
Query: 204 SVQEVDYS---DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSP 260
S++ D+ DP+R SS LL+ E++++ I+ K+ LR ++
Sbjct: 88 SIKSWDFGQTDDPIRMYLCEMSSVELLSREGEIEIAKKIKSE-KVNMLRSLVESPIV-LR 145
Query: 261 TFAQW 265
TF W
Sbjct: 146 TFMSW 150
Score = 42 (19.8 bits), Expect = 1.6e-31, Sum P(2) = 1.6e-31
Identities = 14/54 (25%), Positives = 27/54 (50%)
Query: 102 DTNTSMWAQLTERERASIIGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKL 155
D+ ++ Q E E SII ++ I + E++ S+ KS D T + +++
Sbjct: 52 DSGINVLEQSDEDEANSIIEENRIKDEMDEDDVSDTSI--KSWDFGQTDDPIRM 103
>TIGR_CMR|DET_0551 [details] [associations]
symbol:DET_0551 "RNA polymerase sigma factor RpoD"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR012760 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
RefSeq:YP_181295.1 ProteinModelPortal:Q3Z904 SMR:Q3Z904
STRING:Q3Z904 GeneID:3230115 KEGG:det:DET0551 PATRIC:21608171
OMA:FISHLER ProtClustDB:CLSK935624
BioCyc:DETH243164:GJNF-551-MONOMER Uniprot:Q3Z904
Length = 520
Score = 322 (118.4 bits), Expect = 9.9e-32, Sum P(2) = 9.9e-32
Identities = 61/134 (45%), Positives = 90/134 (67%)
Query: 290 MITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQA 349
+I +N+RLV+S+AK + G GM L DL+QEG GL+R EKFD +GFKFSTYA WWI+QA
Sbjct: 287 LIQANLRLVVSVAKKHIGRGMPLLDLIQEGNIGLIRAVEKFDFHRGFKFSTYATWWIRQA 346
Query: 350 VRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVL 409
+ ++++DQ+RTIR+P HMVE ++ +QL + GR P +E+A L +++ +
Sbjct: 347 ITRAIADQARTIRIPVHMVETINKLLSISRQLSQKLGREPTPDEIAVEMDLPPEKVREIA 406
Query: 410 LSPKAPRSLDQKIG 423
+ P SL+ IG
Sbjct: 407 KVSQLPVSLESPIG 420
Score = 49 (22.3 bits), Expect = 9.9e-32, Sum P(2) = 9.9e-32
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQ 264
DP+R LL+A +E L+ +++ ++ +R+ E+ G P+ A+
Sbjct: 99 DPVRMYLHEIGRVPLLSAEDEKTLAKKMEEGKRIREIRQECLEKRGRYPSAAE 151
>UNIPROTKB|Q9KUK1 [details] [associations]
symbol:VC_0517 "RNA polymerase sigma factor" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HSSP:P00579 KO:K03086
OMA:IEMNTDH TIGRFAMs:TIGR02393 ProtClustDB:PRK05658 PIR:F82312
RefSeq:NP_230168.1 ProteinModelPortal:Q9KUK1 SMR:Q9KUK1
DNASU:2615810 GeneID:2615810 KEGG:vch:VC0517 PATRIC:20080131
Uniprot:Q9KUK1
Length = 625
Score = 333 (122.3 bits), Expect = 1.6e-31, Sum P(2) = 1.6e-31
Identities = 64/158 (40%), Positives = 102/158 (64%)
Query: 274 RELRRRLNYGIL----CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
+++ RR++ G K +M+ +N+RLVISIAK Y G+ DL+QEG GL++ +K
Sbjct: 371 KDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK 430
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
F+ +G+KFSTYA WWI+QA+ +S++DQ+RTIR+P HM+E ++ +Q+ E GR P
Sbjct: 431 FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP 490
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
EE+AE + ++ VL K P S++ IG +++
Sbjct: 491 LPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDED 528
Score = 42 (19.8 bits), Expect = 1.6e-31, Sum P(2) = 1.6e-31
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSP 260
+DP+R + LLT E+ ++ I+D + ++ ++E G P
Sbjct: 97 TDPVRMYMREMGTVELLTREGEIDIAKRIED--GINQVQSAIAEYPGTIP 144
>TIGR_CMR|VC_0517 [details] [associations]
symbol:VC_0517 "RNA polymerase sigma factor RpoD"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HSSP:P00579 KO:K03086
OMA:IEMNTDH TIGRFAMs:TIGR02393 ProtClustDB:PRK05658 PIR:F82312
RefSeq:NP_230168.1 ProteinModelPortal:Q9KUK1 SMR:Q9KUK1
DNASU:2615810 GeneID:2615810 KEGG:vch:VC0517 PATRIC:20080131
Uniprot:Q9KUK1
Length = 625
Score = 333 (122.3 bits), Expect = 1.6e-31, Sum P(2) = 1.6e-31
Identities = 64/158 (40%), Positives = 102/158 (64%)
Query: 274 RELRRRLNYGIL----CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
+++ RR++ G K +M+ +N+RLVISIAK Y G+ DL+QEG GL++ +K
Sbjct: 371 KDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK 430
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
F+ +G+KFSTYA WWI+QA+ +S++DQ+RTIR+P HM+E ++ +Q+ E GR P
Sbjct: 431 FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP 490
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
EE+AE + ++ VL K P S++ IG +++
Sbjct: 491 LPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDED 528
Score = 42 (19.8 bits), Expect = 1.6e-31, Sum P(2) = 1.6e-31
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSP 260
+DP+R + LLT E+ ++ I+D + ++ ++E G P
Sbjct: 97 TDPVRMYMREMGTVELLTREGEIDIAKRIED--GINQVQSAIAEYPGTIP 144
>TIGR_CMR|APH_0576 [details] [associations]
symbol:APH_0576 "RNA polymerase sigma factor RpoD"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393 OMA:KISFICE
ProtClustDB:CLSK749621 RefSeq:YP_505167.1 ProteinModelPortal:Q2GKD4
SMR:Q2GKD4 STRING:Q2GKD4 GeneID:3930981 KEGG:aph:APH_0576
PATRIC:20949818 BioCyc:APHA212042:GHPM-600-MONOMER Uniprot:Q2GKD4
Length = 627
Score = 343 (125.8 bits), Expect = 1.6e-30, P = 1.6e-30
Identities = 73/183 (39%), Positives = 114/183 (62%)
Query: 242 LLKLEGLREVLS-ERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVIS 300
LL+++ ++LS E C GS F A A + + E R N K +MI +N+RLV+S
Sbjct: 354 LLEMQNRVKLLSGEDCPGS--FK--ALVAKIQKHE--RTANRA---KQEMIKANLRLVVS 404
Query: 301 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 360
IAK Y G+ DLVQEG GL++ +KFD +G+KFSTYA WW++QA+ ++++DQ+RT
Sbjct: 405 IAKKYSNRGLQFLDLVQEGNIGLMKAVDKFDYKRGYKFSTYATWWVRQAITRAIADQART 464
Query: 361 IRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQ 420
IR+P HM+E ++ +Q+ E GR P EE++ ++++++ V+ K P SL+
Sbjct: 465 IRIPVHMIETVNKINRTLRQMLHEIGREPTLEELSARLNINVEKIRKVMKIVKDPVSLES 524
Query: 421 KIG 423
IG
Sbjct: 525 PIG 527
>TIGR_CMR|SO_1284 [details] [associations]
symbol:SO_1284 "RNA polymerase sigma-70 factor"
species:211586 "Shewanella oneidensis MR-1" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HSSP:P00579 HOGENOM:HOG000270272
KO:K03086 OMA:IEMNTDH TIGRFAMs:TIGR02393 RefSeq:NP_716906.1
ProteinModelPortal:Q8EHE1 SMR:Q8EHE1 GeneID:1169104
KEGG:son:SO_1284 PATRIC:23522218 ProtClustDB:CLSK906181
Uniprot:Q8EHE1
Length = 616
Score = 338 (124.0 bits), Expect = 5.3e-30, P = 5.3e-30
Identities = 71/189 (37%), Positives = 113/189 (59%)
Query: 246 EGLREVLSE--RCGGSPTFAQWAAAAGVDQ-RELRRRLNYGIL----CKDKMITSNIRLV 298
EGLR V + RC + + +++ RR++ G K +M+ +N+RLV
Sbjct: 331 EGLRMVEEDVQRCRSKLAAIEEETGLVIAAIKDINRRMSIGEAKARRAKKEMVEANLRLV 390
Query: 299 ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 358
ISIAK Y G+ DL+QEG GL++ +KF+ +G+KFSTYA WWI+QA+ +S++DQ+
Sbjct: 391 ISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA 450
Query: 359 RTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSL 418
RTIR+P HM+E ++ +Q+ E GR P+ EE+AE + ++ VL K P S+
Sbjct: 451 RTIRIPVHMIETINKLNRISRQMLQEMGREPSPEELAERMMMPEDKIRKVLKIAKEPISM 510
Query: 419 DQKIGINQN 427
+ IG +++
Sbjct: 511 ETPIGDDED 519
>TIGR_CMR|SPO_1750 [details] [associations]
symbol:SPO_1750 "RNA polymerase sigma-70 factor RpoD"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007127
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR007631 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF03979 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
Pfam:PF04546 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
ProtClustDB:PRK05658 RefSeq:YP_166988.1 ProteinModelPortal:Q5LSL7
SMR:Q5LSL7 GeneID:3193502 KEGG:sil:SPO1750 PATRIC:23376823
OMA:YQGSELD Uniprot:Q5LSL7
Length = 660
Score = 332 (121.9 bits), Expect = 3.0e-29, P = 3.0e-29
Identities = 61/137 (44%), Positives = 93/137 (67%)
Query: 287 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI 346
K +M+ +N+RLVISIAK Y G+ DL+QEG GL++ +KF+ +G+KFSTYA WWI
Sbjct: 423 KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 482
Query: 347 KQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLH 406
+QA+ +S++DQ+RTIR+P HM+E ++ +Q+ E GR P EE+AE + ++++
Sbjct: 483 RQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVR 542
Query: 407 AVLLSPKAPRSLDQKIG 423
V+ K P SL+ IG
Sbjct: 543 KVMKIAKEPISLETPIG 559
>TIGR_CMR|NSE_0312 [details] [associations]
symbol:NSE_0312 "RNA polymerase sigma factor RpoD"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 RefSeq:YP_506202.1
ProteinModelPortal:Q2GE94 SMR:Q2GE94 STRING:Q2GE94 GeneID:3931706
KEGG:nse:NSE_0312 PATRIC:22680715 OMA:HIHETAN
ProtClustDB:CLSK2527840 BioCyc:NSEN222891:GHFU-338-MONOMER
Uniprot:Q2GE94
Length = 620
Score = 304 (112.1 bits), Expect = 7.5e-29, Sum P(2) = 7.5e-29
Identities = 60/154 (38%), Positives = 92/154 (59%)
Query: 274 RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
R++ L+ K +M+ +N+RLVISIAK Y GM DL+QEG GL++ +KFD
Sbjct: 349 RKVATHLDNANAAKHRMVEANLRLVISIAKKYTNRGMPFPDLIQEGNIGLMKAVDKFDHR 408
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
+G KFSTYA WW +QA+ ++++D +R P H+ E +V R++LY+ NGR P EE
Sbjct: 409 RGHKFSTYATWWCRQAITRAIADCGSIVRKPVHIHETANKVMRTRRRLYNLNGREPTVEE 468
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
+A +S ++ L + P SL+ +G + N
Sbjct: 469 IANLLKISPDKVKKSLKVNQDPISLESPVGDDSN 502
Score = 47 (21.6 bits), Expect = 7.5e-29, Sum P(2) = 7.5e-29
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 212 DPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL 252
DP+R YLR S +LL+ ++E++++ I K E L VL
Sbjct: 92 DPVRLYLREM-SYVKLLSRDDEVEIAKAIV-AEKFESLSAVL 131
>TIGR_CMR|GSU_1525 [details] [associations]
symbol:GSU_1525 "RNA polymerase sigma-70 factor family"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AE017180 GenomeReviews:AE017180_GR HOGENOM:HOG000270273
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
KO:K03086 OMA:IDTIEDT RefSeq:NP_952576.1 ProteinModelPortal:Q74CZ4
SMR:Q74CZ4 GeneID:2687268 KEGG:gsu:GSU1525 PATRIC:22025893
ProtClustDB:CLSK828404 BioCyc:GSUL243231:GH27-1508-MONOMER
Uniprot:Q74CZ4
Length = 328
Score = 281 (104.0 bits), Expect = 9.6e-29, Sum P(2) = 9.6e-29
Identities = 57/157 (36%), Positives = 97/157 (61%)
Query: 272 DQRELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
+++EL R+ G +DKMI SN+RLV+ IAK Y G+ DL++EG GL++ E+F
Sbjct: 77 EEKELAGRIAKGDKAARDKMIESNLRLVVKIAKRYINRGLPFLDLIEEGNMGLIKAVERF 136
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
SK +FSTYA WWI+Q++ ++L +QSRTIRLP H+ + ++ + ++L R P+
Sbjct: 137 KLSKECRFSTYATWWIRQSIERALVNQSRTIRLPVHVSDDINKMLKITRELVQRLNREPS 196
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
+EVA ++ + +++ K S+++ +G N +
Sbjct: 197 VKEVATEMKVNSAYVRRLMVLLKKTYSIERPMGENSD 233
Score = 54 (24.1 bits), Expect = 9.6e-29, Sum P(2) = 9.6e-29
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 204 SVQEVDYSDPLR-YLRATTSSSRLLTANEEMQLSAGI 239
++++ + D ++ YLR +RLLTA+EE +L+ I
Sbjct: 50 NIEQEHFDDAIKLYLREI-QRTRLLTADEEKELAGRI 85
Score = 44 (20.5 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 126 VEAAPEEEYSEQQPLNKSADLEPTH--EELKLLEEQVSQS 163
+EAA EEE E+ P ++E H + +KL ++ ++
Sbjct: 32 LEAAEEEEEPEE-PAEVGKNIEQEHFDDAIKLYLREIQRT 70
>TIGR_CMR|CJE_1081 [details] [associations]
symbol:CJE_1081 "RNA polymerase sigma factor RpoD"
species:195099 "Campylobacter jejuni RM1221" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR012760 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
ProtClustDB:PRK05658 RefSeq:YP_179074.1 ProteinModelPortal:Q5HUG1
SMR:Q5HUG1 STRING:Q5HUG1 GeneID:3231590 KEGG:cjr:CJE1081
PATRIC:20043971 OMA:ILDAICS BioCyc:CJEJ195099:GJC0-1107-MONOMER
Uniprot:Q5HUG1
Length = 622
Score = 318 (117.0 bits), Expect = 8.4e-28, P = 8.4e-28
Identities = 57/137 (41%), Positives = 93/137 (67%)
Query: 287 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI 346
K +M SN+RLV+SIAK Y G+ DL+QEG GL++ +KF+ +G+KFSTYA WWI
Sbjct: 382 KGRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWI 441
Query: 347 KQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLH 406
+QA+ ++++DQ+RTIR+P HM+E ++ + ++ ++G+ P+ +A+ GLS+ ++
Sbjct: 442 RQAISRAIADQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVK 501
Query: 407 AVLLSPKAPRSLDQKIG 423
V+ K P SL+ IG
Sbjct: 502 QVIKITKEPISLEAPIG 518
>TIGR_CMR|CBU_1669 [details] [associations]
symbol:CBU_1669 "RNA polymerase sigma factor RpoS"
species:227377 "Coxiella burnetii RSA 493" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AE016828 GenomeReviews:AE016828_GR
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 HSSP:P00579 EMBL:AF244357
RefSeq:NP_820651.1 ProteinModelPortal:Q9KI19 SMR:Q9KI19
PRIDE:Q9KI19 GeneID:1209580 KEGG:cbu:CBU_1669 PATRIC:17932081
KO:K03087 OMA:HISAQAT ProtClustDB:CLSK914949
BioCyc:CBUR227377:GJ7S-1641-MONOMER TIGRFAMs:TIGR02394
Uniprot:Q9KI19
Length = 352
Score = 266 (98.7 bits), Expect = 6.4e-26, Sum P(2) = 6.4e-26
Identities = 54/153 (35%), Positives = 92/153 (60%)
Query: 272 DQRELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
++ ++ RR++ G + +MI +N+RLV+ IA++Y G+ DL++EG GL+ EKF
Sbjct: 98 EELKIARRVHKGDPKARKQMIEANLRLVVKIARHYVNRGLPFLDLIEEGNLGLLTAVEKF 157
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +GF+FSTYA WWI+Q + +++ +QSRT+RLP H+++ K+L E
Sbjct: 158 DPERGFRFSTYATWWIRQTIERAIMNQSRTVRLPIHVIKELNVYLRTAKKLTQEVDHEAT 217
Query: 391 NEEVAEATGLSMKRLHAVL-LSPKAPRSLDQKI 422
E+VA ++ + ++ L+P A S+D I
Sbjct: 218 PEDVAHLIDKPVQEIRRIMDLAPSAT-SIDVPI 249
Score = 42 (19.8 bits), Expect = 6.4e-26, Sum P(2) = 6.4e-26
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 196 STSRRKRPSVQEVDYSDPLR-YLRATTSSSRLLTANEEMQLS 236
+ ++ K +E SDP + YLR LL A EE++++
Sbjct: 63 ANAKAKTKKRRETRSSDPTQIYLREL-GFQPLLNAKEELKIA 103
>UNIPROTKB|P13445 [details] [associations]
symbol:rpoS "RNA polymerase, sigma S (sigma 38) factor"
species:83333 "Escherichia coli K-12" [GO:0006950 "response to
stress" evidence=IDA] [GO:0001123 "transcription initiation from
bacterial-type RNA polymerase promoter" evidence=IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;IDA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0016987 "sigma factor activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 HOGENOM:HOG000270273
EMBL:U29579 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 EMBL:L07869 EMBL:D17549 eggNOG:COG0568 KO:K03087
TIGRFAMs:TIGR02394 EMBL:X16400 EMBL:D13548 EMBL:Z14969 PIR:A65055
RefSeq:NP_417221.1 RefSeq:YP_490950.1 ProteinModelPortal:P13445
SMR:P13445 DIP:DIP-10777N IntAct:P13445 MINT:MINT-1228474
PRIDE:P13445 EnsemblBacteria:EBESCT00000000907
EnsemblBacteria:EBESCT00000000908 EnsemblBacteria:EBESCT00000000909
EnsemblBacteria:EBESCT00000017671 GeneID:12933280 GeneID:947210
KEGG:ecj:Y75_p2679 KEGG:eco:b2741 PATRIC:32120886 EchoBASE:EB0505
EcoGene:EG10510 OMA:AARQVMI ProtClustDB:PRK05657
BioCyc:EcoCyc:RPOS-MONOMER BioCyc:ECOL316407:JW5437-MONOMER
BioCyc:MetaCyc:RPOS-MONOMER Genevestigator:P13445 Uniprot:P13445
Length = 330
Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
Identities = 59/148 (39%), Positives = 91/148 (61%)
Query: 277 RRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF 336
RR L + + +MI SN+RLV+ IA+ Y G+ L DL++EG GL+R EKFD +GF
Sbjct: 81 RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGF 140
Query: 337 KFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV-EATYRVKEARKQLYSENGRHPNNEEVA 395
+FSTYA WWI+Q + +++ +Q+RTIRLP H+V E ++ AR +L + P+ EE+A
Sbjct: 141 RFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTAR-ELSHKLDHEPSAEEIA 199
Query: 396 EATGLSMKRLHAVLLSPKAPRSLDQKIG 423
E + + +L + S+D +G
Sbjct: 200 EQLDKPVDDVSRMLRLNERITSVDTPLG 227
>TIGR_CMR|SO_3432 [details] [associations]
symbol:SO_3432 "RNA polymerase sigma factor RpoS"
species:211586 "Shewanella oneidensis MR-1" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AE014299 GenomeReviews:AE014299_GR
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 KO:K03087 TIGRFAMs:TIGR02394 OMA:KWLDELN
RefSeq:NP_718985.1 HSSP:Q9WX78 ProteinModelPortal:Q8EBR8 SMR:Q8EBR8
GeneID:1171107 KEGG:son:SO_3432 PATRIC:23526552
ProtClustDB:CLSK907167 Uniprot:Q8EBR8
Length = 326
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 71/196 (36%), Positives = 111/196 (56%)
Query: 231 EEMQLSAGIQDLLK--LEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKD 288
+E+ L +QD L+ L+ + L E G SP + A + R+ L ++
Sbjct: 35 QELGLEQQVQDDLQKNLDATQLYLGE-IGFSPLLS-----AEEEVYFSRKALKGCEKSRN 88
Query: 289 KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ 348
+MI SN+RLV+ IA+ Y G+ L DL++EG GL+R EKFD +GF+FSTYA WWI+Q
Sbjct: 89 RMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQ 148
Query: 349 AVRKSLSDQSRTIRLPFHMV-EATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHA 407
+ +++ +Q+RTIRLP H+V E ++ AR +L + P EE+AE +S +
Sbjct: 149 TIERAIMNQTRTIRLPIHVVKELNVYLRTAR-ELAQKLDHEPTAEEIAEKLQVSSVDVSR 207
Query: 408 VLLSPKAPRSLDQKIG 423
+L + S+D +G
Sbjct: 208 MLKLNEKITSVDVPLG 223
>TIGR_CMR|VC_0534 [details] [associations]
symbol:VC_0534 "RNA polymerase sigma factor RpoS"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
KO:K03087 TIGRFAMs:TIGR02394 EMBL:AF000945 PIR:A82312
RefSeq:NP_230185.1 ProteinModelPortal:O51804 SMR:O51804
DNASU:2615203 GeneID:2615203 KEGG:vch:VC0534 PATRIC:20080172
OMA:KWLDELN ProtClustDB:CLSK874000 Uniprot:O51804
Length = 335
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 77/229 (33%), Positives = 118/229 (51%)
Query: 205 VQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLK---------LEGLREVLSER 255
V+E D+ D + T + LT++EE+ G + ++ L+ + LSE
Sbjct: 10 VEEFDFEDEALEVLETDAE---LTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSE- 65
Query: 256 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 315
G SP A + RR L + +MI SN+RLV+ I++ Y G+ L DL
Sbjct: 66 IGFSPLLT-----AEEEVLYARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDL 120
Query: 316 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV-EATYRV 374
++EG GL+R EKFD +GF+FSTYA WWI+Q + ++L +Q+RTIRLP H+V E +
Sbjct: 121 IEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYL 180
Query: 375 KEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
+ AR +L P EE+A + + +L + S+D IG
Sbjct: 181 RTAR-ELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIG 228
>TIGR_CMR|CPS_1079 [details] [associations]
symbol:CPS_1079 "RNA polymerase sigma factor RpoS"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:CP000083 GenomeReviews:CP000083_GR
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 KO:K03087 TIGRFAMs:TIGR02394
OMA:KWLDELN RefSeq:YP_267823.1 ProteinModelPortal:Q487E2 SMR:Q487E2
STRING:Q487E2 GeneID:3519032 KEGG:cps:CPS_1079 PATRIC:21465429
BioCyc:CPSY167879:GI48-1161-MONOMER Uniprot:Q487E2
Length = 296
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 48/110 (43%), Positives = 74/110 (67%)
Query: 287 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI 346
+ +MI SN+RLV+ IA+ Y G+ L DL++EG GL+R EKFD +GF+FSTYA WWI
Sbjct: 57 RKRMIESNLRLVVKIARRYNNRGLPLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWI 116
Query: 347 KQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAE 396
+Q + +++ +Q+RTIRLP H+V+ A ++L + P E++A+
Sbjct: 117 RQTIERAIMNQTRTIRLPIHVVKELNIYLRASRELIQKLDHEPTAEDIAQ 166
>TAIR|locus:2167413 [details] [associations]
symbol:SIGE "AT5G24120" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=ISS;TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0016987 "sigma factor activity"
evidence=ISS] [GO:0071483 "cellular response to blue light"
evidence=IEP] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009507
"chloroplast" evidence=IDA] [GO:0001053 "plastid sigma factor
activity" evidence=IMP] [GO:0010207 "photosystem II assembly"
evidence=IMP] [GO:2001141 "regulation of RNA biosynthetic process"
evidence=IMP] [GO:0010114 "response to red light" evidence=IEP]
[GO:0010218 "response to far red light" evidence=IEP] [GO:0009637
"response to blue light" evidence=IGI] [GO:0009658 "chloroplast
organization" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0010264
"myo-inositol hexakisphosphate biosynthetic process" evidence=RCA]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0005739 EMBL:CP002688 GO:GO:0009507
GO:GO:0045893 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0010218 GO:GO:0010114
GO:GO:0009658 EMBL:AB010696 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 GO:GO:0010207 eggNOG:COG0568 HSSP:Q9EZJ8
GO:GO:0001053 KO:K03093 EMBL:AB021120 EMBL:Y18550 EMBL:AK316888
EMBL:AY045660 EMBL:AK221445 IPI:IPI00519217 PIR:T51328
RefSeq:NP_197800.1 UniGene:At.5425 ProteinModelPortal:Q9ZNX9
SMR:Q9ZNX9 STRING:Q9ZNX9 PRIDE:Q9ZNX9 EnsemblPlants:AT5G24120.1
GeneID:832477 KEGG:ath:AT5G24120 GeneFarm:28 TAIR:At5g24120
InParanoid:Q9ZNX9 OMA:NKLIKHN PhylomeDB:Q9ZNX9
ProtClustDB:CLSN2686315 Genevestigator:Q9ZNX9 GO:GO:0071483
Uniprot:Q9ZNX9
Length = 517
Score = 256 (95.2 bits), Expect = 1.0e-19, P = 1.0e-19
Identities = 59/204 (28%), Positives = 108/204 (52%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
+L++ E L +Q + L +++VL + G P A+ A + E+++++ G
Sbjct: 219 VLSSTEHAWLFKLMQPMKALLEVKDVLQKSLGREPREAEIAGEINMTAGEVKKKIEIGRA 278
Query: 286 CKDKMITSNIRLVISIAKNYQGA---GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 342
++K+I N+RLV+ + Y G QDL Q G RGL+ ++F+ + F+ STY
Sbjct: 279 ARNKLIKHNLRLVLFVMNKYFHEFTNGPKFQDLCQAGMRGLITAIDRFEPKRKFRLSTYG 338
Query: 343 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSM 402
+WI+ A+ +S++ + T R+PF + + +A+ +L+ E GR P +EV E ++
Sbjct: 339 LFWIRHAIIRSMTTSNFT-RVPFGLESVRVEIYKAKTELWFEMGRPPTEDEVVERLKITP 397
Query: 403 KRLHAVLLSPKAPRSLDQKIGINQ 426
+R VL + K SL+ K + Q
Sbjct: 398 ERYREVLRAAKPVLSLNSKHSVTQ 421
>UNIPROTKB|Q84JN3 [details] [associations]
symbol:SIG5 "Os05g0586600 protein" species:39947 "Oryza
sativa Japonica Group" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IDA] [GO:0009536 "plastid" evidence=IDA]
[GO:0016987 "sigma factor activity" evidence=IDA]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0009536 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009637
GO:GO:0010218 GO:GO:0010114 EMBL:AP008211 GO:GO:0016987
GO:GO:0003899 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HSSP:Q9EZJ8 KO:K03093 OMA:NKLIKHN ProtClustDB:CLSN2686315
EMBL:AB096011 EMBL:AB096071 RefSeq:NP_001056463.1 UniGene:Os.57417
EnsemblPlants:LOC_Os05g50930.1 GeneID:4339759 KEGG:osa:4339759
Uniprot:Q84JN3
Length = 500
Score = 247 (92.0 bits), Expect = 1.2e-18, P = 1.2e-18
Identities = 61/204 (29%), Positives = 105/204 (51%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
+LT+ + ++L +Q + + ++E L P AQ A A + ++RR L G
Sbjct: 203 VLTSAQSIRLFRIMQPMKAIMEMKENLENEVQSEPNDAQLAEAMNMSVLQMRRHLEVGRA 262
Query: 286 CKDKMITSNIRLVI-SIAKNYQGAGMN--LQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 342
++K+I N+RLV+ +I K Y + D+ Q G GL+ ++F+ +GF+ STYA
Sbjct: 263 ARNKLIKHNLRLVLYTINKYYPDMSNDERFDDICQAGANGLITAIDRFEPKRGFRISTYA 322
Query: 343 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSM 402
+WI+ ++ ++++ + T R PF M + AR++L E GR P EEV + GLS
Sbjct: 323 LFWIRHSIVRAITLSNFT-RFPFAMESERQEIHRAREELAFELGRAPTEEEVMKKVGLSP 381
Query: 403 KRLHAVLLSPKAPRSLDQKIGINQ 426
R V+ + SL + + Q
Sbjct: 382 ARYRDVVRMTRPTYSLHARNRVTQ 405
>TIGR_CMR|BA_4042 [details] [associations]
symbol:BA_4042 "RNA polymerase sigma-G factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] [GO:0030436 "asexual
sporulation" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014212 InterPro:IPR014284 InterPro:IPR014322
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 EMBL:AE016879 EMBL:AE017334
GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
KO:K03091 HSSP:P00579 HOGENOM:HOG000270270 TIGRFAMs:TIGR02980
OMA:QISDERN ProtClustDB:PRK08215 TIGRFAMs:TIGR02850
RefSeq:NP_846282.1 RefSeq:YP_020684.2 ProteinModelPortal:Q81WD6
DNASU:1086511 EnsemblBacteria:EBBACT00000008607
EnsemblBacteria:EBBACT00000015378 GeneID:1086511 GeneID:2816830
KEGG:ban:BA_4042 KEGG:bar:GBAA_4042 PATRIC:18785676
BioCyc:BANT261594:GJ7F-3930-MONOMER Uniprot:Q81WD6
Length = 259
Score = 197 (74.4 bits), Expect = 3.4e-15, P = 3.4e-15
Identities = 45/152 (29%), Positives = 84/152 (55%)
Query: 272 DQRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
+ R+L R + G I ++K++ N+RLV+S+ + + G + DL Q GC GL++ + F
Sbjct: 23 EMRKLFREMQSGEISAREKLVNGNLRLVLSVIQRFNNRGEYVDDLFQVGCIGLMKSIDNF 82
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D + KFSTYA I +R+ L D + IR+ + + Y+ + R++L +EN + P
Sbjct: 83 DLGQNVKFSTYAVPMIIGEIRRYLRDNN-PIRVSRSLRDIAYKALQVREKLIAENSKEPT 141
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKI 422
++A+ ++ + + L + + P SL + I
Sbjct: 142 AMDIAKVLEVTHEEIVFALDAIQDPVSLFEPI 173
>UNIPROTKB|O32728 [details] [associations]
symbol:O32728 "RNA polymerase sigma factor" species:1422
"Geobacillus stearothermophilus" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014236 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
TIGRFAMs:TIGR02980 EMBL:L47360 PDB:1L0O PDBsum:1L0O
ProteinModelPortal:O32728 SMR:O32728 IntAct:O32728
EvolutionaryTrace:O32728 TIGRFAMs:TIGR02885 Uniprot:O32728
Length = 250
Score = 192 (72.6 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 50/171 (29%), Positives = 89/171 (52%)
Query: 272 DQRELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
+ +EL RR G +D++I N+RLV S+ + + G DL Q GC GL++ +KF
Sbjct: 16 EMKELIRRSQEGDQEARDEIIEKNMRLVWSVVQRFLNRGYEADDLFQIGCIGLLKSVDKF 75
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D S KFSTYA I +++ L D T+++ + E ++++A+ +L GR P
Sbjct: 76 DLSYDVKFSTYAVPMIIGEIQRFLRDDG-TVKVSRSLKEMGNKIRKAKDELSKTRGRSPT 134
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFILNLADS 441
E+A+ G+S + + + + P S+ + + N P + + +AD+
Sbjct: 135 ITEIADHLGISPEDVVLAQEAVRLPTSIHETVYENDG-DP-ITLLDQIADA 183
>TIGR_CMR|BA_4294 [details] [associations]
symbol:BA_4294 "RNA polymerase sigma-F factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] [GO:0030436 "asexual
sporulation" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014236 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
KO:K03091 HOGENOM:HOG000270270 TIGRFAMs:TIGR02980
TIGRFAMs:TIGR02885 RefSeq:NP_846527.1 RefSeq:YP_020937.1
RefSeq:YP_030233.1 HSSP:O32728 ProteinModelPortal:Q81MF5 SMR:Q81MF5
DNASU:1088482 EnsemblBacteria:EBBACT00000012570
EnsemblBacteria:EBBACT00000017412 EnsemblBacteria:EBBACT00000022371
GeneID:1088482 GeneID:2818699 GeneID:2850307 KEGG:ban:BA_4294
KEGG:bar:GBAA_4294 KEGG:bat:BAS3983 OMA:IRRSQEG
ProtClustDB:PRK05572 BioCyc:BANT260799:GJAJ-4040-MONOMER
BioCyc:BANT261594:GJ7F-4178-MONOMER Uniprot:Q81MF5
Length = 252
Score = 188 (71.2 bits), Expect = 3.4e-14, P = 3.4e-14
Identities = 44/136 (32%), Positives = 75/136 (55%)
Query: 287 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI 346
+D ++ SN+RLV S+ + + G DL Q GC GL++ +KFD S KFSTYA I
Sbjct: 34 RDTIVQSNMRLVWSVVQRFLNRGYEPDDLFQIGCIGLLKSVDKFDLSFDVKFSTYAVPMI 93
Query: 347 KQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLH 406
+++ L D ++++ + E ++++ R +L E GR P EVAEA L+ + +
Sbjct: 94 IGEIQRFLRDDG-SVKVSRSLKETGNKIRKMRDELSKEFGRAPTINEVAEALELTPEEVV 152
Query: 407 AVLLSPKAPRSLDQKI 422
+ +AP S+ + +
Sbjct: 153 LAQEASRAPSSIHETV 168
>TIGR_CMR|CHY_2055 [details] [associations]
symbol:CHY_2055 "RNA polymerase sigma-G factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014212 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191 KO:K03091
HOGENOM:HOG000270270 TIGRFAMs:TIGR02980 RefSeq:YP_360874.1
ProteinModelPortal:Q3AAG0 STRING:Q3AAG0 GeneID:3726360
KEGG:chy:CHY_2055 PATRIC:21277191 OMA:QISDERN ProtClustDB:PRK08215
BioCyc:CHYD246194:GJCN-2054-MONOMER TIGRFAMs:TIGR02850
Uniprot:Q3AAG0
Length = 257
Score = 176 (67.0 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 44/152 (28%), Positives = 78/152 (51%)
Query: 272 DQRELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
+ ++L ++ G + + K+I+ N+RLV+SI + + G + DL Q GC GL++ + F
Sbjct: 23 EMKKLFLKVKEGDMEARQKLISGNLRLVLSIIQRFTNRGEYVDDLFQVGCIGLIKAIDNF 82
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D + KFSTYA I +R+ L D + IR+ + + Y+ + R L R P
Sbjct: 83 DLEQNVKFSTYAVPMIIGEIRRYLRDNN-PIRVSRSLRDVAYKALQVRDNLVGRFSREPT 141
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKI 422
E+A+ + + + L + + P SL + I
Sbjct: 142 VSEIAQELKVPQEEVVFALDAIQDPVSLFEPI 173
>TIGR_CMR|CHY_1959 [details] [associations]
symbol:CHY_1959 "RNA polymerase sigma-F factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014236 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191 KO:K03091
HOGENOM:HOG000270270 TIGRFAMs:TIGR02980 TIGRFAMs:TIGR02885
RefSeq:YP_360778.1 ProteinModelPortal:Q3AAQ6 STRING:Q3AAQ6
GeneID:3726621 KEGG:chy:CHY_1959 PATRIC:21277005 OMA:PRERYIL
ProtClustDB:CLSK941224 BioCyc:CHYD246194:GJCN-1958-MONOMER
Uniprot:Q3AAQ6
Length = 257
Score = 165 (63.1 bits), Expect = 3.9e-10, P = 3.9e-10
Identities = 42/150 (28%), Positives = 77/150 (51%)
Query: 274 RELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+EL + G + ++K+I N++LV + + + G ++DL Q G GL++ +KFD
Sbjct: 22 KELIEKAQKGDVAAREKLINCNLKLVFKVVERFLHRGYEVEDLFQIGTIGLIKAIDKFDL 81
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+ KFSTYA I +R+ L D + IR+ E ++ + ++ L + GR P
Sbjct: 82 KQQVKFSTYAVPMIVGEIRRFLRDD-QAIRISRSTKELGVKILKEKEALTVKLGREPTIA 140
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKI 422
E+ E G S + + L + ++ SL + +
Sbjct: 141 ELEETLGYSREAIVEALEAGQSLASLFETV 170
>TIGR_CMR|APH_0759 [details] [associations]
symbol:APH_0759 "RNA polymerase sigma-32 factor"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:CP000235 GenomeReviews:CP000235_GR
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
eggNOG:COG0568 HOGENOM:HOG000270269 KO:K03089
ProtClustDB:CLSK749586 RefSeq:YP_505338.1 ProteinModelPortal:Q2GJW3
STRING:Q2GJW3 GeneID:3930206 KEGG:aph:APH_0759 PATRIC:20950212
OMA:ADTHRET BioCyc:APHA212042:GHPM-775-MONOMER Uniprot:Q2GJW3
Length = 289
Score = 165 (63.1 bits), Expect = 7.6e-10, P = 7.6e-10
Identities = 34/132 (25%), Positives = 72/132 (54%)
Query: 281 NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 340
N + K++TS++RLV+ +A ++ G+ L +L+ EG GL++ +KF+ GF+ ST
Sbjct: 42 NRSVADAHKLVTSHLRLVVKVAMGFRSYGLPLMELIMEGNIGLMQAVKKFNPELGFRLST 101
Query: 341 YAHWWIKQAVRKSLSDQSRTIRLPFHMVEAT--YRVKEARKQLY--SENGRHPNNEEVAE 396
YA WWIK +++ + +R+ + + +++ ++++ S + + +AE
Sbjct: 102 YAIWWIKASIKDYILRSWSCMRIGTTQAQKKLFFSLRKIKRRILGCSASASQSDIRAIAE 161
Query: 397 ATGLSMKRLHAV 408
G S K + ++
Sbjct: 162 ECGTSEKEVESM 173
>TIGR_CMR|SPO_1409 [details] [associations]
symbol:SPO_1409 "RNA polymerase sigma-32 factor"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0009408 "response to
heat" evidence=ISS] [GO:0016987 "sigma factor activity"
evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012759
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00716 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003677 GO:GO:0008270 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009408 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270269 KO:K03089 ProtClustDB:PRK06596
TIGRFAMs:TIGR02392 RefSeq:YP_166650.1 ProteinModelPortal:Q5LTK5
GeneID:3195142 KEGG:sil:SPO1409 PATRIC:23376133 OMA:HESQEEM
Uniprot:Q5LTK5
Length = 298
Score = 161 (61.7 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 35/118 (29%), Positives = 67/118 (56%)
Query: 289 KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ 348
KM+TS++RL IA Y+G G+ +++ E GL++ ++FD KGF+ +TYA WWI+
Sbjct: 52 KMVTSHLRLAAKIAMGYRGYGLPQAEVISEANVGLMQAVKRFDPEKGFRLATYAMWWIRA 111
Query: 349 AVRKSLSDQSRTIRLPFHMVEAT--YRVKEARKQLYS-ENG--RHPNNEEVAEATGLS 401
A+++ + ++L + + +++A+ ++ + E G R N +A G+S
Sbjct: 112 AIQEYILRSWSLVKLGTTSAQKKLFFNLRKAKAKIGALEEGDLRPENVARIAHDLGVS 169
>TIGR_CMR|SPO_0406 [details] [associations]
symbol:SPO_0406 "RNA polymerase sigma-32 factor"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0009408 "response to
heat" evidence=ISS] [GO:0016987 "sigma factor activity"
evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270269 KO:K03089 RefSeq:YP_165669.1
ProteinModelPortal:Q5LWD6 GeneID:3196326 KEGG:sil:SPO0406
PATRIC:23374073 OMA:GREWIEA ProtClustDB:PRK07500 Uniprot:Q5LWD6
Length = 292
Score = 159 (61.0 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 28/63 (44%), Positives = 45/63 (71%)
Query: 289 KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ 348
++IT+ +RL IS+A ++ G + DL+QE GL++ A+KFD +G +FSTYA WWIK
Sbjct: 44 RLITAYMRLAISMAAKFKRYGAPMNDLIQEAGLGLMKAADKFDPDRGVRFSTYAVWWIKA 103
Query: 349 AVR 351
+++
Sbjct: 104 SIQ 106
>TIGR_CMR|GSU_0655 [details] [associations]
symbol:GSU_0655 "RNA polymerase sigma-32 factor"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012759 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009408 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HOGENOM:HOG000270269 KO:K03089
TIGRFAMs:TIGR02392 RefSeq:NP_951712.1 ProteinModelPortal:Q74FF4
GeneID:2685542 KEGG:gsu:GSU0655 PATRIC:22024067 OMA:DIVSARW
ProtClustDB:CLSK827976 BioCyc:GSUL243231:GH27-665-MONOMER
Uniprot:Q74FF4
Length = 284
Score = 151 (58.2 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 33/116 (28%), Positives = 61/116 (52%)
Query: 290 MITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQA 349
+ITSN+R V+ IA Y+ G+ + DL+QEG GL+ KF+ KG + +YA WWI+
Sbjct: 49 LITSNLRFVVKIAAEYRSYGLKMLDLIQEGNVGLMMAVRKFNPYKGIRLISYAVWWIRAY 108
Query: 350 VRKSLSDQSRTIRLPFHMVEAT--YRVKEARKQLYSENGRHPNNEEVAEATGLSMK 403
++ + +++ + +++ +A+ + G ++ A AT L +K
Sbjct: 109 IQNHIISAWSLLKIGTTQAQKKLFFKLNQAKNAIKGLTG---TDDIEATATSLHVK 161
Score = 41 (19.5 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 130 PEEEYSEQQPLNKSADLEPTH 150
PEEEY + DLE H
Sbjct: 27 PEEEYRFAVKFYEDKDLEAAH 47
>UNIPROTKB|P50511 [details] [associations]
symbol:rpoH "RNA polymerase sigma-32 factor" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR012759 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008270
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0009408 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 KO:K03089 ProtClustDB:PRK06596
TIGRFAMs:TIGR02392 EMBL:U44432 PIR:D82357 RefSeq:NP_229808.1
ProteinModelPortal:P50511 DNASU:2614865 GeneID:2614865
KEGG:vch:VC0150 PATRIC:20079338 OMA:LDQRERY Uniprot:P50511
Length = 286
Score = 155 (59.6 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 39/134 (29%), Positives = 75/134 (55%)
Query: 272 DQRELRRRLNY-GILCKDK-MITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
++REL RL+Y G + K +I S++R V+ +A+ Y G G+ + DLVQEG GL++ ++
Sbjct: 33 EERELAERLHYKGDIDAAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKR 92
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEAT--YRVKEARKQL-YSENG 386
F+ G + ++A WIK + + + R +++ + + +++++K+L + NG
Sbjct: 93 FNPEMGVRLVSFAVHWIKAEIHEYVLRNWRIVKIATTKAQRKLFFNLRKSKKRLGWFNNG 152
Query: 387 RHPNNEEVAEATGL 400
E VA G+
Sbjct: 153 EV---ETVARELGV 163
>TIGR_CMR|VC_0150 [details] [associations]
symbol:VC_0150 "RNA polymerase sigma-32 factor" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012759
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0008270 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009408 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
KO:K03089 ProtClustDB:PRK06596 TIGRFAMs:TIGR02392 EMBL:U44432
PIR:D82357 RefSeq:NP_229808.1 ProteinModelPortal:P50511
DNASU:2614865 GeneID:2614865 KEGG:vch:VC0150 PATRIC:20079338
OMA:LDQRERY Uniprot:P50511
Length = 286
Score = 155 (59.6 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 39/134 (29%), Positives = 75/134 (55%)
Query: 272 DQRELRRRLNY-GILCKDK-MITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
++REL RL+Y G + K +I S++R V+ +A+ Y G G+ + DLVQEG GL++ ++
Sbjct: 33 EERELAERLHYKGDIDAAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKR 92
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEAT--YRVKEARKQL-YSENG 386
F+ G + ++A WIK + + + R +++ + + +++++K+L + NG
Sbjct: 93 FNPEMGVRLVSFAVHWIKAEIHEYVLRNWRIVKIATTKAQRKLFFNLRKSKKRLGWFNNG 152
Query: 387 RHPNNEEVAEATGL 400
E VA G+
Sbjct: 153 EV---ETVARELGV 163
>TIGR_CMR|ECH_0655 [details] [associations]
symbol:ECH_0655 "RNA polymerase sigma-32 factor"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
GO:GO:0003677 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270269 KO:K03089 RefSeq:YP_507464.1
ProteinModelPortal:Q2GGG9 STRING:Q2GGG9 GeneID:3928045
KEGG:ech:ECH_0655 PATRIC:20576762 OMA:HHLVTSH
ProtClustDB:CLSK749586 BioCyc:ECHA205920:GJNR-657-MONOMER
Uniprot:Q2GGG9
Length = 297
Score = 151 (58.2 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 32/117 (27%), Positives = 66/117 (56%)
Query: 272 DQRELRRRLNYGILCK-DKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
+ R R GI+ +++TS++RLV+ +A +++ + L +L+ EG GL++ +KF
Sbjct: 32 EDRLARNWYENGIVADAHRLVTSHLRLVVKVALSFKNYELPLIELIMEGNIGLMQAVKKF 91
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEAT--YRVKEARKQLYSEN 385
+ + GF+ STYA WWIK ++ + I++ + + +++ +K+L+ N
Sbjct: 92 NPTLGFRLSTYAIWWIKAFIKDYILKSWSCIKIGTTQAQRKLFFSLRKIKKKLFKYN 148
>TIGR_CMR|CPS_1519 [details] [associations]
symbol:CPS_1519 "motility sigma factor FliA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009296
"flagellum assembly" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR012845
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0016987 GO:GO:0003899
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270271 KO:K02405 ProtClustDB:PRK06986
TIGRFAMs:TIGR02479 RefSeq:YP_268261.1 ProteinModelPortal:Q485K4
STRING:Q485K4 GeneID:3522182 KEGG:cps:CPS_1519 PATRIC:21466245
OMA:YDEWRED BioCyc:CPSY167879:GI48-1600-MONOMER Uniprot:Q485K4
Length = 239
Score = 146 (56.5 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 42/130 (32%), Positives = 68/130 (52%)
Query: 308 AGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHM 367
A + + DL+Q G GL A FD +KG F T+A I+ A+ L + R P +
Sbjct: 37 ASVQVDDLIQSGMIGLFEAANNFDNTKGASFETFAGIRIRGAM---LDEIRRGDWTPRSV 93
Query: 368 VEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLD-QKIGINQ 426
+ + + EA KQL ++ GR ++ EVAE +S+K H +L + L +G+N+
Sbjct: 94 HKNSRMISEAIKQLEAQLGRDVSDVEVAEKLDISLKDYHQILSEVSTGKILGIDDLGVNE 153
Query: 427 N-LKPSVCFI 435
+ +KPS +I
Sbjct: 154 DAIKPSDDYI 163
>UNIPROTKB|P0AGB3 [details] [associations]
symbol:rpoH species:83333 "Escherichia coli K-12"
[GO:0003677 "DNA binding" evidence=IEA;IDA] [GO:0016987 "sigma
factor activity" evidence=IEA;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;IMP] [GO:0009408
"response to heat" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0006950 "response
to stress" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012759 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0006355
EMBL:U00039 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0008270 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009408
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
EMBL:J05516 EMBL:M20668 EMBL:K02177 PIR:H65142 RefSeq:NP_417918.1
RefSeq:YP_491973.1 ProteinModelPortal:P0AGB3 SMR:P0AGB3
DIP:DIP-46203N IntAct:P0AGB3 PRIDE:P0AGB3 DNASU:947970
EnsemblBacteria:EBESCT00000004588 EnsemblBacteria:EBESCT00000004589
EnsemblBacteria:EBESCT00000004590 EnsemblBacteria:EBESCT00000004591
EnsemblBacteria:EBESCT00000004592 EnsemblBacteria:EBESCT00000004593
EnsemblBacteria:EBESCT00000018203 GeneID:12933503 GeneID:947970
KEGG:ecj:Y75_p3717 KEGG:eco:b3461 PATRIC:32122366 EchoBASE:EB0890
EcoGene:EG10897 eggNOG:COG0568 HOGENOM:HOG000270269 KO:K03089
OMA:LNNDEVH ProtClustDB:PRK06596 BioCyc:EcoCyc:RPOH-MONOMER
BioCyc:ECOL316407:JW3426-MONOMER BioCyc:MetaCyc:RPOH-MONOMER
Genevestigator:P0AGB3 TIGRFAMs:TIGR02392 Uniprot:P0AGB3
Length = 284
Score = 145 (56.1 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 39/143 (27%), Positives = 74/143 (51%)
Query: 265 WAAAAGVDQRELRRRLNY-GILCKDK-MITSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 322
W + ++R L +L+Y G L K +I S++R V+ IA+NY G G+ DL+QEG G
Sbjct: 26 WPMLSADEERALAEKLHYHGDLEAAKTLILSHLRFVVHIARNYAGYGLPQADLIQEGNIG 85
Query: 323 LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEAT--YRVKEARKQ 380
L++ +F+ G + ++A WIK + + + R +++ + + +++ +++
Sbjct: 86 LMKAVRRFNPEVGVRLVSFAVHWIKAEIHEYVLRNWRIVKVATTKAQRKLFFNLRKTKQR 145
Query: 381 LYSENGRHPNNEEVAEATGLSMK 403
L N E VA G++ K
Sbjct: 146 LGWFN--QDEVEMVARELGVTSK 166
>UNIPROTKB|Q7D5S2 [details] [associations]
symbol:sigF "Alternative RNA polymerase sigma factor SigF"
species:1773 "Mycobacterium tuberculosis" [GO:0005515 "protein
binding" evidence=IPI] [GO:0006629 "lipid metabolic process"
evidence=IMP] [GO:0006979 "response to oxidative stress"
evidence=IMP] [GO:0006995 "cellular response to nitrogen
starvation" evidence=IEP] [GO:0009409 "response to cold"
evidence=IMP] [GO:0016987 "sigma factor activity" evidence=IGI]
[GO:0034059 "response to anoxia" evidence=IMP] [GO:0043175 "RNA
polymerase core enzyme binding" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0046677 "response to antibiotic" evidence=IMP] [GO:0052572
"response to host immune response" evidence=IEP] [GO:0070417
"cellular response to cold" evidence=IEP] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0045893 GO:GO:0006979 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003677
GO:GO:0006629 GO:GO:0046677 GO:GO:0052572 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0070417
GO:GO:0006995 GO:GO:0034059 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 GO:GO:0043175
HOGENOM:HOG000270270 KO:K03090 TIGRFAMs:TIGR02980 EMBL:AL123456
RefSeq:NP_217803.1 RefSeq:NP_337914.1 RefSeq:YP_006516763.1
SMR:Q7D5S2 IntAct:Q7D5S2 EnsemblBacteria:EBMYCT00000001724
EnsemblBacteria:EBMYCT00000068996 GeneID:13318109 GeneID:888727
GeneID:922492 KEGG:mtc:MT3385 KEGG:mtu:Rv3286c KEGG:mtv:RVBD_3286c
PATRIC:18129196 TubercuList:Rv3286c OMA:EMDRDEV
ProtClustDB:PRK07122 Uniprot:Q7D5S2
Length = 261
Score = 141 (54.7 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 38/132 (28%), Positives = 63/132 (47%)
Query: 287 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI 346
+DK++ + L IA+ ++G G DL+Q GLV A +FD G F ++A I
Sbjct: 40 RDKIVQRCLPLADHIARRFEGRGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTI 99
Query: 347 KQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLH 406
VR+ D S ++++P + E R+ A L GR P+ E+A G+ +
Sbjct: 100 MGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVI 159
Query: 407 AVLLSPKAPRSL 418
LL+ + +L
Sbjct: 160 EGLLAGSSYHTL 171
>TIGR_CMR|SO_4583 [details] [associations]
symbol:SO_4583 "RNA polymerase sigma-32 factor"
species:211586 "Shewanella oneidensis MR-1" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012759 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009408 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HOGENOM:HOG000270269 KO:K03089
ProtClustDB:PRK06596 TIGRFAMs:TIGR02392 HSSP:Q9EZJ8 OMA:EIAYAER
RefSeq:NP_720099.1 ProteinModelPortal:Q8E8S8 GeneID:1172168
KEGG:son:SO_4583 PATRIC:23528833 Uniprot:Q8E8S8
Length = 285
Score = 137 (53.3 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 40/133 (30%), Positives = 71/133 (53%)
Query: 275 ELRRRLNY-GILCKDK-MITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
EL +RL G L K +I S++R V+ +AK Y G G+ DL+QEG GL++ ++FD
Sbjct: 39 ELAKRLQETGDLQAAKQLIMSHLRFVVHVAKGYAGYGLPQADLIQEGNIGLMKAVKRFDP 98
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEAT--YRVKEARKQLYSENGRHPN 390
G + ++A WIK + + + R +++ + + +++A+ +L G +
Sbjct: 99 DVGVRLVSFAVHWIKAEIHEYVLKNWRIVKVATTKAQRKLFFNIRKAKTRL----GWFSD 154
Query: 391 NEE--VAEATGLS 401
+E VAE G+S
Sbjct: 155 DEVTMVAENLGVS 167
>TIGR_CMR|CBU_1909 [details] [associations]
symbol:CBU_1909 "RNA polymerase sigma-32 factor"
species:227377 "Coxiella burnetii RSA 493" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012759 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009408 GenomeReviews:AE016828_GR
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270269 ProtClustDB:PRK06596 TIGRFAMs:TIGR02392
HSSP:Q9EZJ8 EMBL:AF120928 ProteinModelPortal:Q9LAQ0 PRIDE:Q9LAQ0
PATRIC:17932555 BioCyc:CBUR227377:GJ7S-1884-MONOMER Uniprot:Q9LAQ0
Length = 288
Score = 134 (52.2 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 23/75 (30%), Positives = 46/75 (61%)
Query: 289 KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ 348
K++ S++R V+ IA+ Y G G++ DL+QEG GL++ ++FD G + ++A WI+
Sbjct: 54 KLVLSHLRFVVRIARGYSGYGLSQADLIQEGNIGLMKAVKRFDPQVGVRLVSFAVHWIRA 113
Query: 349 AVRKSLSDQSRTIRL 363
+ + + R +++
Sbjct: 114 EIHEFILKNWRIVKI 128
>TIGR_CMR|CPS_0161 [details] [associations]
symbol:CPS_0161 "RNA polymerase sigma-32 factor"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012759 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009408 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270269 KO:K03089 ProtClustDB:PRK06596
TIGRFAMs:TIGR02392 RefSeq:YP_266929.1 ProteinModelPortal:Q48AI4
STRING:Q48AI4 DNASU:3520829 GeneID:3520829 KEGG:cps:CPS_0161
PATRIC:21463737 OMA:EIAYAER BioCyc:CPSY167879:GI48-264-MONOMER
Uniprot:Q48AI4
Length = 285
Score = 133 (51.9 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 38/135 (28%), Positives = 70/135 (51%)
Query: 273 QRELRRRL-NYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
+ +L RL N L ++I S++R VI +AK Y G G+ DLVQEG GL++ ++F
Sbjct: 33 EHDLATRLYNENDLQAAQELIMSHLRFVIHVAKGYSGYGLPHADLVQEGNVGLMKAVKRF 92
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEAT--YRVKEARKQLYSENGRH 388
+ G + ++A WIK + + + R +++ + + +++ +K+L +
Sbjct: 93 NPEVGVRLVSFAVHWIKAEIHEFVLKNWRIVKVATTKAQRKLFFNLRKNKKRLGWFSTEE 152
Query: 389 PNNEEVAEATGLSMK 403
N VAE G++ K
Sbjct: 153 VNT--VAENLGVTTK 165
>UNIPROTKB|Q9KQD4 [details] [associations]
symbol:VC_2066 "RNA polymerase sigma factor for flagellar
operon FliA" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0006352 "DNA-dependent transcription, initiation"
evidence=ISS] [GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012845 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 GO:GO:0019861 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 GO:GO:0003899
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 KO:K02405
ProtClustDB:PRK06986 TIGRFAMs:TIGR02479 HSSP:Q9EZJ8 PIR:D82123
RefSeq:NP_231698.1 ProteinModelPortal:Q9KQD4 DNASU:2613446
GeneID:2613446 KEGG:vch:VC2066 PATRIC:20083166 OMA:DSFWGYG
Uniprot:Q9KQD4
Length = 244
Score = 130 (50.8 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 40/151 (26%), Positives = 74/151 (49%)
Query: 282 YGILCKDKMITSNIRLVIS-IAKNYQGA---GMNLQDLVQEGCRGLVRGAEKFDASKGFK 337
YG L ++ +++ IA + G + ++DL+Q G GL+ + +D SKG
Sbjct: 10 YGNLNSQQLFLEKYSVLVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQKNYDGSKGAS 69
Query: 338 FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEA 397
F TYA I+ A+ L D R +P + + + +A L E R P + EVA+
Sbjct: 70 FETYAGIRIRGAM---LDDIRRGDWVPRSVHKHNREISQAIAVLEGELNRDPTDAEVAKF 126
Query: 398 TGLSMKRLHAVLLSPKAPRSLD-QKIGINQN 427
+S+++ H+VL+ R + + +G++ +
Sbjct: 127 LNMSLEQYHSVLMDINCSRIVGIEDLGVSDD 157
>TIGR_CMR|VC_2066 [details] [associations]
symbol:VC_2066 "RNA polymerase sigma factor for flagellar
operon FliA" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012845 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 GO:GO:0019861 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 GO:GO:0003899
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 KO:K02405
ProtClustDB:PRK06986 TIGRFAMs:TIGR02479 HSSP:Q9EZJ8 PIR:D82123
RefSeq:NP_231698.1 ProteinModelPortal:Q9KQD4 DNASU:2613446
GeneID:2613446 KEGG:vch:VC2066 PATRIC:20083166 OMA:DSFWGYG
Uniprot:Q9KQD4
Length = 244
Score = 130 (50.8 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 40/151 (26%), Positives = 74/151 (49%)
Query: 282 YGILCKDKMITSNIRLVIS-IAKNYQGA---GMNLQDLVQEGCRGLVRGAEKFDASKGFK 337
YG L ++ +++ IA + G + ++DL+Q G GL+ + +D SKG
Sbjct: 10 YGNLNSQQLFLEKYSVLVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQKNYDGSKGAS 69
Query: 338 FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEA 397
F TYA I+ A+ L D R +P + + + +A L E R P + EVA+
Sbjct: 70 FETYAGIRIRGAM---LDDIRRGDWVPRSVHKHNREISQAIAVLEGELNRDPTDAEVAKF 126
Query: 398 TGLSMKRLHAVLLSPKAPRSLD-QKIGINQN 427
+S+++ H+VL+ R + + +G++ +
Sbjct: 127 LNMSLEQYHSVLMDINCSRIVGIEDLGVSDD 157
>TIGR_CMR|CHY_2056 [details] [associations]
symbol:CHY_2056 "RNA polymerase sigma-E factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014200 InterPro:IPR014284 InterPro:IPR016263
Pfam:PF04542 Pfam:PF04545 PIRSF:PIRSF000770 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030435 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270274 KO:K03091 ProtClustDB:PRK08301
TIGRFAMs:TIGR02835 RefSeq:YP_360875.1 ProteinModelPortal:Q3AAF9
STRING:Q3AAF9 GeneID:3727807 KEGG:chy:CHY_2056 PATRIC:21277193
OMA:ERQETTI BioCyc:CHYD246194:GJCN-2055-MONOMER Uniprot:Q3AAF9
Length = 237
Score = 127 (49.8 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 287 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI 346
K +I N+RLV+ IA+ ++ G+N++DLV G GL++ F+ K K +TYA I
Sbjct: 57 KSTLIERNLRLVVYIARKFENTGVNIEDLVSIGTIGLIKAVNTFNPEKKIKLATYASRCI 116
Query: 347 KQAVRKSLSDQSRTIRL 363
+ + L S+ IRL
Sbjct: 117 ENEILMYLRRNSK-IRL 132
>TIGR_CMR|NSE_0341 [details] [associations]
symbol:NSE_0341 "RNA polymerase sigma-32 factor"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270269 KO:K03089 RefSeq:YP_506230.1 STRING:Q2GE66
GeneID:3931426 KEGG:nse:NSE_0341 PATRIC:22680769 OMA:AINEYVI
ProtClustDB:CLSK2528041 BioCyc:NSEN222891:GHFU-366-MONOMER
Uniprot:Q2GE66
Length = 288
Score = 129 (50.5 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 26/83 (31%), Positives = 47/83 (56%)
Query: 272 DQRELRRR--LNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
++REL R ++ I +++ + +RLV+ + ++ G L DL EG GL++ +
Sbjct: 30 EERELIDRWFVHRDISAAQRLVEAYLRLVVKVTVRFRNYGFPLMDLASEGNIGLMKAIKN 89
Query: 330 FDASKGFKFSTYAHWWIKQAVRK 352
F+ + G +TYA WWIK A+ +
Sbjct: 90 FNPTLGHGIATYAIWWIKAAINE 112
>TIGR_CMR|SO_3210 [details] [associations]
symbol:SO_3210 "RNA polymerase sigma-27 factor"
species:211586 "Shewanella oneidensis MR-1" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009296
"flagellum assembly" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR012845
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 GO:GO:0019861
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0016987 GO:GO:0003899 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 HOGENOM:HOG000270271 KO:K02405
ProtClustDB:PRK06986 TIGRFAMs:TIGR02479 HSSP:P00579
RefSeq:NP_718765.1 ProteinModelPortal:Q8ECD3 GeneID:1170903
KEGG:son:SO_3210 PATRIC:23526104 OMA:PHESEIA Uniprot:Q8ECD3
Length = 237
Score = 124 (48.7 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 33/122 (27%), Positives = 61/122 (50%)
Query: 308 AGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHM 367
A + L DL+Q G GL+ + KFD KG KF T+A I+ A+ L + R +P +
Sbjct: 37 ASVQLDDLLQAGMMGLLEASSKFDGGKGAKFETFAGIRIRGAM---LDEIRRGDWVPRSV 93
Query: 368 VEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLD-QKIGINQ 426
R+ +A +L GR + E+AE +++ H +L + + + +G+++
Sbjct: 94 HRNNRRIAQAIDELEQVLGRDARDTEIAEKLDMTLDEYHHILNDVSVGKIIGIEDLGVSE 153
Query: 427 NL 428
++
Sbjct: 154 DI 155
>UNIPROTKB|P0AEM6 [details] [associations]
symbol:fliA "RNA polymerase, sigma 28 (sigma F) factor"
species:83333 "Escherichia coli K-12" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016987
"sigma factor activity" evidence=IEA] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR012845 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0016987 GO:GO:0003899 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 EMBL:L36677 EMBL:U18539
PIR:JC4346 RefSeq:NP_416432.3 RefSeq:YP_490179.1
ProteinModelPortal:P0AEM6 SMR:P0AEM6 DIP:DIP-47959N IntAct:P0AEM6
MINT:MINT-1250982 PRIDE:P0AEM6 EnsemblBacteria:EBESCT00000000857
EnsemblBacteria:EBESCT00000000858 EnsemblBacteria:EBESCT00000015311
GeneID:12930662 GeneID:948824 KEGG:ecj:Y75_p1893 KEGG:eco:b1922
PATRIC:32119179 EchoBASE:EB1330 EcoGene:EG11355 eggNOG:COG1191
HOGENOM:HOG000270271 KO:K02405 OMA:TYAITRI ProtClustDB:PRK06986
BioCyc:EcoCyc:EG11355-MONOMER BioCyc:ECOL316407:JW1907-MONOMER
BioCyc:MetaCyc:EG11355-MONOMER Genevestigator:P0AEM6
TIGRFAMs:TIGR02479 Uniprot:P0AEM6
Length = 239
Score = 122 (48.0 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 35/104 (33%), Positives = 54/104 (51%)
Query: 308 AGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR-LPFH 366
A + L DL+Q G GL+ E++DA +G F+TYA Q +R ++ D+ R+ +P
Sbjct: 37 ASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA----VQRIRGAMLDELRSRDWVPRS 92
Query: 367 MVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 410
+ V +A QL E GR+ EVAE G+ + +LL
Sbjct: 93 VRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLL 136
>UNIPROTKB|Q9K5J6 [details] [associations]
symbol:sigB "RNA polymerase sigma-B factor" species:1392
"Bacillus anthracis" [GO:0006352 "DNA-dependent transcription,
initiation" evidence=IMP] [GO:0016987 "sigma factor activity"
evidence=IMP] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 InterPro:IPR014322
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191 EMBL:AJ272497
RefSeq:NP_843493.1 RefSeq:YP_017620.1 RefSeq:YP_027202.1
ProteinModelPortal:Q9K5J6 DNASU:1088960
EnsemblBacteria:EBBACT00000009251 EnsemblBacteria:EBBACT00000017740
EnsemblBacteria:EBBACT00000023287 GeneID:1088960 GeneID:2814654
GeneID:2850205 KEGG:ban:BA_0992 KEGG:bar:GBAA_0992 KEGG:bat:BAS0928
HOGENOM:HOG000270270 KO:K03090 OMA:VEQGYEE ProtClustDB:PRK08583
BioCyc:BANT260799:GJAJ-1006-MONOMER
BioCyc:BANT261594:GJ7F-1051-MONOMER InterPro:IPR014288
TIGRFAMs:TIGR02980 TIGRFAMs:TIGR02941 Uniprot:Q9K5J6
Length = 257
Score = 122 (48.0 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 33/123 (26%), Positives = 62/123 (50%)
Query: 287 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI 346
+++++ LV SIA Y G +D++Q G GL+ ++D S G F +A I
Sbjct: 31 QERLVDHYKNLVYSIAYRYSKGGPMHEDIIQVGMLGLLGAIRRYDYSIGNAFEPFAIPTI 90
Query: 347 KQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLH 406
++K L D++ I +P + + ++K A ++L R P E+A+ GLS + +
Sbjct: 91 VGEIKKYLRDKTWGIHVPRRIKDLGGKIKLAIEELTDHLQRSPKIIEIADHLGLSEEEVL 150
Query: 407 AVL 409
++
Sbjct: 151 EIM 153
>TIGR_CMR|BA_0992 [details] [associations]
symbol:BA_0992 "RNA polymerase sigma-B factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=IMP] [GO:0016987
"sigma factor activity" evidence=IMP] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
eggNOG:COG1191 EMBL:AJ272497 RefSeq:NP_843493.1 RefSeq:YP_017620.1
RefSeq:YP_027202.1 ProteinModelPortal:Q9K5J6 DNASU:1088960
EnsemblBacteria:EBBACT00000009251 EnsemblBacteria:EBBACT00000017740
EnsemblBacteria:EBBACT00000023287 GeneID:1088960 GeneID:2814654
GeneID:2850205 KEGG:ban:BA_0992 KEGG:bar:GBAA_0992 KEGG:bat:BAS0928
HOGENOM:HOG000270270 KO:K03090 OMA:VEQGYEE ProtClustDB:PRK08583
BioCyc:BANT260799:GJAJ-1006-MONOMER
BioCyc:BANT261594:GJ7F-1051-MONOMER InterPro:IPR014288
TIGRFAMs:TIGR02980 TIGRFAMs:TIGR02941 Uniprot:Q9K5J6
Length = 257
Score = 122 (48.0 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 33/123 (26%), Positives = 62/123 (50%)
Query: 287 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI 346
+++++ LV SIA Y G +D++Q G GL+ ++D S G F +A I
Sbjct: 31 QERLVDHYKNLVYSIAYRYSKGGPMHEDIIQVGMLGLLGAIRRYDYSIGNAFEPFAIPTI 90
Query: 347 KQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLH 406
++K L D++ I +P + + ++K A ++L R P E+A+ GLS + +
Sbjct: 91 VGEIKKYLRDKTWGIHVPRRIKDLGGKIKLAIEELTDHLQRSPKIIEIADHLGLSEEEVL 150
Query: 407 AVL 409
++
Sbjct: 151 EIM 153
>TIGR_CMR|BA_4566 [details] [associations]
symbol:BA_4566 "RNA polymerase sigma-27 factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] [GO:0030436 "asexual
sporulation" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014209 InterPro:IPR014284 InterPro:IPR016263
Pfam:PF04542 Pfam:PF04545 PIRSF:PIRSF000770 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030435 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
RefSeq:NP_846788.1 RefSeq:YP_021211.1 RefSeq:YP_030484.1
ProteinModelPortal:P62182 DNASU:1088335
EnsemblBacteria:EBBACT00000010179 EnsemblBacteria:EBBACT00000016313
EnsemblBacteria:EBBACT00000019367 GeneID:1088335 GeneID:2818972
GeneID:2852916 KEGG:ban:BA_4566 KEGG:bar:GBAA_4566 KEGG:bat:BAS4236
HOGENOM:HOG000270274 KO:K03091 OMA:WWIRESI ProtClustDB:PRK05803
BioCyc:BANT260799:GJAJ-4292-MONOMER
BioCyc:BANT261594:GJ7F-4441-MONOMER TIGRFAMs:TIGR02846
Uniprot:P62182
Length = 237
Score = 118 (46.6 bits), Expect = 0.00012, P = 0.00012
Identities = 27/90 (30%), Positives = 46/90 (51%)
Query: 272 DQRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
D+R+ + G ++ +I N+RLV I K ++ G + +DL+ G GL++ E +
Sbjct: 34 DERKYLELMEQGDAQARNLLIEHNLRLVAHIVKKFENTGEDAEDLISIGTIGLIKAIESY 93
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRT 360
A KG K +TYA I+ + L +T
Sbjct: 94 SAGKGTKLATYAARCIENEILMHLRVLKKT 123
>UNIPROTKB|O83707 [details] [associations]
symbol:TP_0709 "RNA polymerase sigma factor" species:243276
"Treponema pallidum subsp. pallidum str. Nichols" [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR012845 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
GO:GO:0003899 EMBL:AE000520 GenomeReviews:AE000520_GR
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 KO:K02405
OMA:TYAITRI TIGRFAMs:TIGR02479 HSSP:Q9EZJ8 PIR:A71290
RefSeq:NP_219146.1 ProteinModelPortal:O83707 IntAct:O83707
MINT:MINT-6480056 GeneID:2610969 KEGG:tpa:TP0709 PATRIC:20531509
ProtClustDB:PRK06288 Uniprot:O83707
Length = 262
Score = 119 (46.9 bits), Expect = 0.00012, P = 0.00012
Identities = 41/134 (30%), Positives = 67/134 (50%)
Query: 295 IRLVIS-IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKS 353
++ V S IA G + DLV G GL +K+D K +F+TYA +R +
Sbjct: 38 VKYVASKIAVGKPG-NVEFDDLVSYGIFGLFDAIDKYDPEKNIRFNTYA----VTRIRGA 92
Query: 354 LSDQSRTIR-LPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL-- 410
+ D+ R+I +P + + T +++EA L + GR + E+A A + ++ H +LL
Sbjct: 93 IFDELRSIDWVPRSVRQQTRQIEEAIADLEARLGRXATDTEIACALNIELEEYHQLLLKV 152
Query: 411 SPKAPRSL-DQKIG 423
S + SL D K G
Sbjct: 153 SGTSVISLADSKFG 166
>TIGR_CMR|GSU_3053 [details] [associations]
symbol:GSU_3053 "RNA polymerase sigma factor for flagellar
operon" species:243231 "Geobacter sulfurreducens PCA" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012845 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00716 GO:GO:0019861
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0016987 GO:GO:0003899 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 HOGENOM:HOG000270271 KO:K02405 OMA:TYAITRI
TIGRFAMs:TIGR02479 RefSeq:NP_954095.1 ProteinModelPortal:Q748E9
GeneID:2686906 KEGG:gsu:GSU3053 PATRIC:22028957
ProtClustDB:CLSK829077 BioCyc:GSUL243231:GH27-2993-MONOMER
Uniprot:Q748E9
Length = 250
Score = 118 (46.6 bits), Expect = 0.00014, P = 0.00014
Identities = 36/129 (27%), Positives = 68/129 (52%)
Query: 287 KDKMITSNIRLV---ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH 343
+D++I +++ LV + + ++ +DL+ GL+ AE+FD ++G +F T+A
Sbjct: 20 RDELIVNHLPLVKFLVGRIASQLPPHLDQEDLMSAAIIGLITAAERFDPTRGVQFKTFAE 79
Query: 344 WWIKQAVRKSLSDQ---SRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGL 400
I+ + L Q +R++R F +E + + E QL GR+P +EEVA A +
Sbjct: 80 QRIRGTIIDELRSQDWLTRSLRDKFKKLEKEFVLLE--HQL----GRNPTSEEVATALKM 133
Query: 401 SMKRLHAVL 409
S+ + +L
Sbjct: 134 SVDEYYQML 142
>TIGR_CMR|BA_4043 [details] [associations]
symbol:BA_4043 "RNA polymerase sigma-29 factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] [GO:0030436 "asexual
sporulation" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014200 InterPro:IPR014284 InterPro:IPR016263
Pfam:PF04542 Pfam:PF04545 PIRSF:PIRSF000770 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030435 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270274 KO:K03091 RefSeq:NP_846283.1
RefSeq:YP_020685.1 RefSeq:YP_030006.1 ProteinModelPortal:P62177
DNASU:1086623 EnsemblBacteria:EBBACT00000012093
EnsemblBacteria:EBBACT00000017203 EnsemblBacteria:EBBACT00000022798
GeneID:1086623 GeneID:2816772 GeneID:2850034 KEGG:ban:BA_4043
KEGG:bar:GBAA_4043 KEGG:bat:BAS3755 OMA:LIMELRF
ProtClustDB:PRK08301 BioCyc:BANT260799:GJAJ-3813-MONOMER
BioCyc:BANT261594:GJ7F-3931-MONOMER TIGRFAMs:TIGR02835
Uniprot:P62177
Length = 239
Score = 116 (45.9 bits), Expect = 0.00021, P = 0.00021
Identities = 21/61 (34%), Positives = 37/61 (60%)
Query: 290 MITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQA 349
+I N+RLV+ IA+ ++ G+N++DL+ G GL++ F+ K K +TYA I+
Sbjct: 62 LIERNLRLVVYIARKFENTGINIEDLISIGTIGLIKAVNTFNPEKKIKLATYASRCIENE 121
Query: 350 V 350
+
Sbjct: 122 I 122
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.128 0.357 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 460 385 0.00092 117 3 11 23 0.43 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 62
No. of states in DFA: 611 (65 KB)
Total size of DFA: 233 KB (2128 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 30.72u 0.14s 30.86t Elapsed: 00:00:01
Total cpu time: 30.73u 0.14s 30.87t Elapsed: 00:00:01
Start: Fri May 10 21:35:17 2013 End: Fri May 10 21:35:18 2013