BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012567
(460 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255565968|ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
gi|223536699|gb|EEF38340.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
Length = 569
Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust.
Identities = 322/429 (75%), Positives = 366/429 (85%), Gaps = 12/429 (2%)
Query: 4 VLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIAAAS 62
VLD+EKLRLPS EA S+++A N WTY G++LATETL TSDEAVIAAA+
Sbjct: 59 VLDLEKLRLPSFEAPSDSIAPNSPWTY---------ATFGSTLATETLITSDEAVIAAAA 109
Query: 63 AEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASIIGD 122
AEAVALARAAVKVAKDAAL+V + SA+ +SK ++S + + S W Q TE ERA IIGD
Sbjct: 110 AEAVALARAAVKVAKDAALLVKNFPSAETESK--LTSPSTIDASRWPQFTETERARIIGD 167
Query: 123 SVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAA 182
SV E P EE S Q + +S LE TH+EL+LL++Q+S+ IAVRSRRQTERKARR RA
Sbjct: 168 SVATETGPREESSMQSSIKESDYLELTHKELELLQKQLSEGIAVRSRRQTERKARRARAV 227
Query: 183 EKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDL 242
EKAA++V+SVK GSTS++KR S+QEVDYSDPLRYLR TTS+SRLLTA+EE++LSA IQDL
Sbjct: 228 EKAASSVVSVKPGSTSKKKRGSLQEVDYSDPLRYLRGTTSTSRLLTASEELELSAAIQDL 287
Query: 243 LKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIA 302
LKLE L+E L+ER GG PTFAQWAAAAGVDQR LR+R+N+G +CKDKMI SNIRLVISIA
Sbjct: 288 LKLERLQEELAERYGGQPTFAQWAAAAGVDQRTLRKRINHGTICKDKMIKSNIRLVISIA 347
Query: 303 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 362
KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR
Sbjct: 348 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 407
Query: 363 LPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKI 422
LPFHMVEATYRVKEARKQLYSENGRHP++EEVAEA GLSMKRL AVLL+PKAPRSLDQKI
Sbjct: 408 LPFHMVEATYRVKEARKQLYSENGRHPDDEEVAEAAGLSMKRLSAVLLTPKAPRSLDQKI 467
Query: 423 GINQNLKPS 431
G+N +LKPS
Sbjct: 468 GMNMDLKPS 476
>gi|296090195|emb|CBI40014.3| unnamed protein product [Vitis vinifera]
Length = 575
Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust.
Identities = 336/432 (77%), Positives = 366/432 (84%), Gaps = 2/432 (0%)
Query: 2 TTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIAA 60
T VLD+EKLRLPSLE+HSN+VAA+R WTY G VGP TE N +LA ETL TS+EAVIAA
Sbjct: 51 TAVLDIEKLRLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSEEAVIAA 110
Query: 61 ASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPA-ISSSADTNTSMWAQLTERERASI 119
A+AEAVALA+AAVKVAKDAA +V +NSAK ++KPA S DT+ Q TE ER I
Sbjct: 111 AAAEAVALAKAAVKVAKDAARLVGKNNSAKSETKPASFLSGDDTSQFRRIQFTETERIGI 170
Query: 120 IGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRT 179
+GDSV E + S Q S DLEPT EEL+LLE + S+SI VRS RQ ERKARR
Sbjct: 171 LGDSVGAETGMVDYNSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVERKARRA 230
Query: 180 RAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGI 239
RAAEKA+A V+SV+SGSTSRRKR S+QEVDYSDPLRYLR TTS+SRLLTA EE++LS GI
Sbjct: 231 RAAEKASAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGI 290
Query: 240 QDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVI 299
QDLLKLE L+E L ER G PTFAQWAAAAGVDQ+ LRRR NYGI CKDKMI SNIRLVI
Sbjct: 291 QDLLKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVI 350
Query: 300 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 359
SIAKNYQGAGMN+QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR
Sbjct: 351 SIAKNYQGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 410
Query: 360 TIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLD 419
TIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL+AVLL+PKAPRSLD
Sbjct: 411 TIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLD 470
Query: 420 QKIGINQNLKPS 431
QKIGINQNLKPS
Sbjct: 471 QKIGINQNLKPS 482
>gi|449454538|ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
gi|449473951|ref|XP_004154029.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
Length = 580
Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust.
Identities = 299/429 (69%), Positives = 351/429 (81%), Gaps = 8/429 (1%)
Query: 3 TVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAAAS 62
T LDV++L+LP + ++++V+ R +Y GAV +SLA+ LTS+EA IAAA+
Sbjct: 67 TTLDVDRLKLPPFDTNTDSVSVERLRSYLGAVE--------SSLASTLLTSEEASIAAAA 118
Query: 63 AEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASIIGD 122
AEAV LA+AAVKVA+DAAL+ N+ NS++ +K S D WAQ E ERA IIG+
Sbjct: 119 AEAVTLAKAAVKVARDAALLANNINSSRAGTKSQSSPKPDALHFKWAQFMESERADIIGE 178
Query: 123 SVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAA 182
V V P E + + +S D+EPT EEL+LL++++S+SI V+S+RQTERKARRTRAA
Sbjct: 179 PVGVNKRPMEGDALEPSTTESDDMEPTSEELELLQDELSESITVKSKRQTERKARRTRAA 238
Query: 183 EKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDL 242
EK +V+S KSGS+SR+KR SVQEVDYSDPLRYLRATT++SRLLTA EE++LS GIQDL
Sbjct: 239 EKTVTSVLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSRLLTATEELELSEGIQDL 298
Query: 243 LKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIA 302
LKLE L+E L ER G PTFAQWAAAAGV+QR LR+RLNYG LCKDKMI SNIRLVISIA
Sbjct: 299 LKLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIA 358
Query: 303 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 362
KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQSRTIR
Sbjct: 359 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIR 418
Query: 363 LPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKI 422
LPFHMVEATYRVKEARKQL ENGRHP+++E+AEA GLSMKRL AVL++PKAPRSL+QKI
Sbjct: 419 LPFHMVEATYRVKEARKQLLHENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKI 478
Query: 423 GINQNLKPS 431
GINQNLKPS
Sbjct: 479 GINQNLKPS 487
>gi|225436223|ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
Length = 578
Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust.
Identities = 336/432 (77%), Positives = 366/432 (84%), Gaps = 2/432 (0%)
Query: 2 TTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIAA 60
T VLD+EKLRLPSLE+HSN+VAA+R WTY G VGP TE N +LA ETL TS+EAVIAA
Sbjct: 54 TAVLDIEKLRLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSEEAVIAA 113
Query: 61 ASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPA-ISSSADTNTSMWAQLTERERASI 119
A+AEAVALA+AAVKVAKDAA +V +NSAK ++KPA S DT+ Q TE ER I
Sbjct: 114 AAAEAVALAKAAVKVAKDAARLVGKNNSAKSETKPASFLSGDDTSQFRRIQFTETERIGI 173
Query: 120 IGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRT 179
+GDSV E + S Q S DLEPT EEL+LLE + S+SI VRS RQ ERKARR
Sbjct: 174 LGDSVGAETGMVDYNSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVERKARRA 233
Query: 180 RAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGI 239
RAAEKA+A V+SV+SGSTSRRKR S+QEVDYSDPLRYLR TTS+SRLLTA EE++LS GI
Sbjct: 234 RAAEKASAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGI 293
Query: 240 QDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVI 299
QDLLKLE L+E L ER G PTFAQWAAAAGVDQ+ LRRR NYGI CKDKMI SNIRLVI
Sbjct: 294 QDLLKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVI 353
Query: 300 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 359
SIAKNYQGAGMN+QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR
Sbjct: 354 SIAKNYQGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 413
Query: 360 TIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLD 419
TIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL+AVLL+PKAPRSLD
Sbjct: 414 TIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLD 473
Query: 420 QKIGINQNLKPS 431
QKIGINQNLKPS
Sbjct: 474 QKIGINQNLKPS 485
>gi|224126061|ref|XP_002319746.1| predicted protein [Populus trichocarpa]
gi|222858122|gb|EEE95669.1| predicted protein [Populus trichocarpa]
Length = 567
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 320/431 (74%), Positives = 367/431 (85%), Gaps = 1/431 (0%)
Query: 2 TTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTS-DEAVIAA 60
T VLD+EKLRLPSLE HS++++ANR WTY G +GP + GTSLA ETL + DEAVIAA
Sbjct: 44 TAVLDLEKLRLPSLEPHSDSISANRPWTYIGGIGPQKKPPFGTSLAAETLIANDEAVIAA 103
Query: 61 ASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASII 120
A+AEAVALARAAVKVAKDAA M +++S K ++K I+S+ D+ +SMW+ LTE+ERA II
Sbjct: 104 AAAEAVALARAAVKVAKDAAEMAKNYSSMKKETKIPIASTTDSFSSMWSLLTEKERADII 163
Query: 121 GDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTR 180
GDSV E EEYS Q P + LEPT EEL LL++Q+S+ IAVRS+RQTERKARR R
Sbjct: 164 GDSVSAETRLREEYSVQYPTEEYDCLEPTQEELALLQKQLSEGIAVRSKRQTERKARRAR 223
Query: 181 AAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQ 240
AAEKAAANV+SVKSGSTS++KR +QEVD SDPLR+ R +SSSRLL+A EE++LS GIQ
Sbjct: 224 AAEKAAANVVSVKSGSTSKKKRVPLQEVDQSDPLRFFRGASSSSRLLSATEEVELSEGIQ 283
Query: 241 DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVIS 300
DLLKLE + E L ER GG P+FAQWAAAAGVDQ LR+RLNYGILCKDKMI SN+RLVIS
Sbjct: 284 DLLKLERIEEELKERFGGEPSFAQWAAAAGVDQLTLRKRLNYGILCKDKMIKSNVRLVIS 343
Query: 301 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 360
IAKNYQG GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD+SRT
Sbjct: 344 IAKNYQGTGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDRSRT 403
Query: 361 IRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQ 420
IRLPFHMV+ATYRVKEARKQLYSENGRHP+++EVAEA GLSMKRL AVLL+PKAPRSLDQ
Sbjct: 404 IRLPFHMVDATYRVKEARKQLYSENGRHPDDKEVAEAAGLSMKRLSAVLLTPKAPRSLDQ 463
Query: 421 KIGINQNLKPS 431
K+G N +LK S
Sbjct: 464 KMGFNMDLKLS 474
>gi|224144900|ref|XP_002325455.1| predicted protein [Populus trichocarpa]
gi|222862330|gb|EEE99836.1| predicted protein [Populus trichocarpa]
Length = 564
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 310/429 (72%), Positives = 357/429 (83%), Gaps = 1/429 (0%)
Query: 4 VLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLT-SDEAVIAAAS 62
VL++EKLRLPSLE+HS+++AANR WTY G +GP E GTSLATETL +DEAVIAAA+
Sbjct: 43 VLNLEKLRLPSLESHSDSIAANRPWTYIGGIGPPKEPLFGTSLATETLIINDEAVIAAAA 102
Query: 63 AEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASIIGD 122
AEAVALARAAVKVAKDAA M ++ S ++K I+S+AD+ +SMW+ LT +ERA IIG
Sbjct: 103 AEAVALARAAVKVAKDAAEMAKNYCSVNTETKIPIASTADSFSSMWSLLTGKERADIIGV 162
Query: 123 SVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAA 182
S E EE S Q P +S PTHEEL LLE+Q+S+SI VRS+RQT+RKA+R RAA
Sbjct: 163 SFSAETGLREECSTQYPTEESDCFGPTHEELALLEKQLSESIVVRSKRQTQRKAKRARAA 222
Query: 183 EKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDL 242
EKAAAN + +KSGS ++KR VQEVD SDPLR+ R ++SSRLL+A EE++LS GIQDL
Sbjct: 223 EKAAANFVFMKSGSACKKKRVPVQEVDQSDPLRFFRGASTSSRLLSATEEVELSEGIQDL 282
Query: 243 LKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIA 302
LKLE + E L ER GG PTFAQWAAAA VDQ LR+RLNY ILCKDKMI SNIRLVISIA
Sbjct: 283 LKLERIEEELKERFGGKPTFAQWAAAARVDQITLRKRLNYAILCKDKMIKSNIRLVISIA 342
Query: 303 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 362
KNYQGAGMNLQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWI+QAVR+SLSDQSRTIR
Sbjct: 343 KNYQGAGMNLQDLVQEGCRGLVRGVEKFDASKGFKFSTYAHWWIRQAVRRSLSDQSRTIR 402
Query: 363 LPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKI 422
LPFHMV+ATYRVKEARKQ YSENGRHP+++EVAEATGLSMKRL AVLL+PKAPRSLDQK+
Sbjct: 403 LPFHMVDATYRVKEARKQFYSENGRHPDDKEVAEATGLSMKRLSAVLLTPKAPRSLDQKM 462
Query: 423 GINQNLKPS 431
G N +LK S
Sbjct: 463 GFNMDLKLS 471
>gi|297843640|ref|XP_002889701.1| hypothetical protein ARALYDRAFT_470915 [Arabidopsis lyrata subsp.
lyrata]
gi|297335543|gb|EFH65960.1| hypothetical protein ARALYDRAFT_470915 [Arabidopsis lyrata subsp.
lyrata]
Length = 572
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 302/462 (65%), Positives = 350/462 (75%), Gaps = 14/462 (3%)
Query: 1 MTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIA 59
+T++LDV KLRLPS + S++ ++RQWTY GPSTE +LA+ETL TSDEAV+
Sbjct: 49 LTSMLDVAKLRLPSFDTDSDSRISDRQWTYTRTDGPSTEAKYLEALASETLLTSDEAVVV 108
Query: 60 AASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASI 119
AA+AEAVALARAAVKVAKDA L N +N+ ISS+AD S W Q TE+ERA I
Sbjct: 109 AAAAEAVALARAAVKVAKDATLFKNSNNT-----NLLISSTADKR-SKWDQFTEKERAGI 162
Query: 120 IGDSVIVEAAPEEEYSEQQPLNKSA--DLEPTHEELKLLEEQV-SQSIAVRSRRQTERKA 176
+G + + + NK + DLE +E L E+ S S+AVRS RQTERKA
Sbjct: 163 LGHLAVSDNGIVSDKITAPASNKESPGDLESEKQEEVELLEEQPSVSLAVRSTRQTERKA 222
Query: 177 RRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLS 236
RR + EK A+ + SVK+GS R+KR QEVD++DPLRYLR TTSSS+LLT EE +LS
Sbjct: 223 RRAKGLEKTASGIPSVKTGSNPRKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELS 282
Query: 237 AGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIR 296
AGIQDLLKLE L+ L+ERCG PTFAQWA+AAGVDQ+ LR+R+++G LCKDKMI SNIR
Sbjct: 283 AGIQDLLKLERLQTELTERCGRQPTFAQWASAAGVDQKSLRKRIHHGTLCKDKMIKSNIR 342
Query: 297 LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD 356
LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAVRKSLSD
Sbjct: 343 LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSD 402
Query: 357 QSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR 416
QSR IRLPFHMVEATYRVKEARKQLYSE G+HP NEE+AEATGLSMKRL AVLLSPK PR
Sbjct: 403 QSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPR 462
Query: 417 SLDQKIGINQNLKPSVCFILNLADSLIIFFPPLFIIWFMSFD 458
SLDQKIG+NQNLKPS +AD + + I FM D
Sbjct: 463 SLDQKIGMNQNLKPSEV----IADPEAVTSEDILIKEFMRQD 500
>gi|7363218|emb|CAB83106.1| sigma factor 2 [Sinapis alba]
Length = 575
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 292/438 (66%), Positives = 340/438 (77%), Gaps = 16/438 (3%)
Query: 1 MTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIA 59
+T+ LDV KLRLPS + S++ ++R WTY +GPSTE +LA+ETL TSDEAV+A
Sbjct: 49 LTSTLDVAKLRLPSFDTDSDSRISDRPWTYTRTIGPSTEAKYLEALASETLLTSDEAVVA 108
Query: 60 AASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASI 119
AA+AEAVALARAA+KVAKDA L N HN+ K ++SS+AD S W Q TE+ERA I
Sbjct: 109 AAAAEAVALARAALKVAKDATLFGNSHNT-----KLSVSSAADKR-SKWDQFTEKERAGI 162
Query: 120 IG-----DSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTER 174
+G D+ +V S + S DL P K E++S S AVRS RQTER
Sbjct: 163 LGHLAVSDTGVVSDRITAPGSLECNKEASDDLTPAE---KQEVEKLSVSSAVRSTRQTER 219
Query: 175 KARRTRAAEKAAANVMS-VKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEM 233
KARR + EK A+ + S VK+GS+SR+KR + QE+D++DPLRYLR TTSSS+LLTA EE
Sbjct: 220 KARRVKGLEKTASGMQSSVKTGSSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLTAREEQ 279
Query: 234 QLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITS 293
QLS GIQDLLKLE L+ L+ERCG PTF+QWA+AAGVD++ LR+R+ +G CKD+MI S
Sbjct: 280 QLSEGIQDLLKLERLQAELTERCGHQPTFSQWASAAGVDKKTLRKRITHGTQCKDRMIKS 339
Query: 294 NIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKS 353
NIRLVISIAKNYQGAGM+ QDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAVRKS
Sbjct: 340 NIRLVISIAKNYQGAGMDFQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKS 399
Query: 354 LSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPK 413
LSDQSR IRLPFHMVEATYRVKEARKQLYSE G+ P NEEVAEATGLSMKRL AVLLSPK
Sbjct: 400 LSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKQPKNEEVAEATGLSMKRLMAVLLSPK 459
Query: 414 APRSLDQKIGINQNLKPS 431
PRSLDQKIGIN NLKPS
Sbjct: 460 PPRSLDQKIGINLNLKPS 477
>gi|15223259|ref|NP_172330.1| RNApolymerase sigma subunit 2 [Arabidopsis thaliana]
gi|75219074|sp|O22056.2|SIGB_ARATH RecName: Full=RNA polymerase sigma factor sigB; Short=Sigma factor
B; Short=Sigma-B; AltName: Full=Protein ABERRANT
CHLOROPLAST 1; AltName: Full=RNA polymerase sigma factor
sig1; Short=Atsig1; Short=Sigma factor 1; AltName:
Full=RNA polymerase sigma factor sig2; Short=Atsig2;
Short=Sigma factor 2; AltName: Full=RNA polymerase sigma
factor sigA; Short=Sigma factor A; Short=Sigma-A; Flags:
Precursor
gi|6664315|gb|AAF22897.1|AC006932_14 T27G7.22 [Arabidopsis thaliana]
gi|9802550|gb|AAF99752.1|AC003981_2 F22O13.2 [Arabidopsis thaliana]
gi|2443357|dbj|BAA22427.1| SigB [Arabidopsis thaliana]
gi|2597831|emb|CAA75584.1| sigma factor [Arabidopsis thaliana]
gi|2879922|dbj|BAA24825.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
gi|5478446|dbj|BAA82449.1| sigma factor SigB [Arabidopsis thaliana]
gi|133778838|gb|ABO38759.1| At1g08540 [Arabidopsis thaliana]
gi|332190182|gb|AEE28303.1| RNApolymerase sigma subunit 2 [Arabidopsis thaliana]
Length = 572
Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust.
Identities = 299/465 (64%), Positives = 351/465 (75%), Gaps = 20/465 (4%)
Query: 1 MTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIA 59
+T++LDV KLRLPS + S+++ ++RQWTY GPSTE +LA+ETL TSDEAV+
Sbjct: 49 LTSMLDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVV 108
Query: 60 AASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASI 119
AA+AEAVALARAAVKVAKDA L N +N+ ++SS S W Q TE+ERA I
Sbjct: 109 AAAAEAVALARAAVKVAKDATLFKNSNNTN------LLTSSTADKRSKWDQFTEKERAGI 162
Query: 120 IG-----DSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQV-SQSIAVRSRRQTE 173
+G D+ IV S ++ + DLE +E L E+ S S+AVRS RQTE
Sbjct: 163 LGHLAVSDNGIVSDKITASASNKESI---GDLESEKQEEVELLEEQPSVSLAVRSTRQTE 219
Query: 174 RKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEM 233
RKARR + EK A+ + SVK+GS+ ++KR QEVD++DPLRYLR TTSSS+LLT EE
Sbjct: 220 RKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEH 279
Query: 234 QLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITS 293
+LSAGIQDLLKLE L+ L+ER G PTFAQWA+AAGVDQ+ LR+R+++G LCKDKMI S
Sbjct: 280 ELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKS 339
Query: 294 NIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKS 353
NIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAVRKS
Sbjct: 340 NIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKS 399
Query: 354 LSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPK 413
LSDQSR IRLPFHMVEATYRVKEARKQLYSE G+HP NEE+AEATGLSMKRL AVLLSPK
Sbjct: 400 LSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPK 459
Query: 414 APRSLDQKIGINQNLKPSVCFILNLADSLIIFFPPLFIIWFMSFD 458
PRSLDQKIG+NQNLKPS +AD + + I FM D
Sbjct: 460 PPRSLDQKIGMNQNLKPSEV----IADPEAVTSEDILIKEFMRQD 500
>gi|356509511|ref|XP_003523491.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 558
Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust.
Identities = 289/432 (66%), Positives = 342/432 (79%), Gaps = 15/432 (3%)
Query: 2 TTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIAA 60
+T+L +EK +L +L+A S+ N W Y A N ++L+ E+L T++EAVI A
Sbjct: 47 STLLSLEK-KL-ALDAPSDP---NTSWPYIAAA------NFKSTLSAESLLTNEEAVIVA 95
Query: 61 ASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMW-AQLTERERASI 119
A++EA+ALA+AA KVAKDAAL+V A+ + K +SS +D W Q+ E E
Sbjct: 96 AASEALALAKAAAKVAKDAALLVKKKPPAEAEYKSHVSSKSDDLLLKWFKQMEEVEDG-- 153
Query: 120 IGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRT 179
+ + + A E + P + +DLEP+HEEL+ L+EQ+S SIAVRSRRQTERKA+R
Sbjct: 154 VAEESMGAGAEIMEGVDVSPSEEESDLEPSHEELERLQEQLSDSIAVRSRRQTERKAKRV 213
Query: 180 RAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGI 239
RA EKA N S K GS+SRRKR S+QEVDYSDPLRYLR TTS+SRLLT EE++LSAGI
Sbjct: 214 RATEKATTNFTSFKPGSSSRRKRVSMQEVDYSDPLRYLRTTTSASRLLTPTEEIKLSAGI 273
Query: 240 QDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVI 299
QDLLKLE ++E L+ER G PTFAQWAA AGVDQ+ LR+RLNYGI CKDKMI SNIRLVI
Sbjct: 274 QDLLKLEKIQEDLAERFGSQPTFAQWAAVAGVDQKTLRKRLNYGIFCKDKMIKSNIRLVI 333
Query: 300 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 359
SIAKNYQG+GMNLQDLVQEGCRGLV+GAEKFD +KGFKFSTYAHWWIKQAVRKSLSDQSR
Sbjct: 334 SIAKNYQGSGMNLQDLVQEGCRGLVKGAEKFDGTKGFKFSTYAHWWIKQAVRKSLSDQSR 393
Query: 360 TIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLD 419
TIRLPFHMVEATYRVKEARKQLYSENGR P++EEVAEATGLSMKRL+AVL++PKAPRSL+
Sbjct: 394 TIRLPFHMVEATYRVKEARKQLYSENGRQPDDEEVAEATGLSMKRLNAVLMTPKAPRSLE 453
Query: 420 QKIGINQNLKPS 431
QKIGINQNLKPS
Sbjct: 454 QKIGINQNLKPS 465
>gi|26452898|dbj|BAC43527.1| putative plastid RNA polymerase sigma-subunit SIG1 [Arabidopsis
thaliana]
Length = 572
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 297/465 (63%), Positives = 349/465 (75%), Gaps = 20/465 (4%)
Query: 1 MTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIA 59
+T++LDV KLRLPS + S+++ ++RQWTY GPSTE +LA+ETL TSDEAV+
Sbjct: 49 LTSMLDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVV 108
Query: 60 AASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASI 119
AA+AEAVALARAAVKVAKDA L N + + ++SS S W Q TE+ERA I
Sbjct: 109 AAAAEAVALARAAVKVAKDATLFKNSNYTN------LLTSSTADKRSKWDQFTEKERAGI 162
Query: 120 IG-----DSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQV-SQSIAVRSRRQTE 173
+G D+ IV S ++ + DLE +E L E+ S +AVRS RQTE
Sbjct: 163 LGHLAVSDNGIVSDKITASASNKESI---GDLESEKQEEVELLEEQPSVGLAVRSTRQTE 219
Query: 174 RKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEM 233
RKARR + EK A+ + SVK+GS+ ++KR QEVD++DPLRYLR TTSSS+LLT EE
Sbjct: 220 RKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEH 279
Query: 234 QLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITS 293
+LSAGIQDLLKLE L+ L+ER G PTFAQWA+AAGVDQ+ LR+R+++G LCKDKMI S
Sbjct: 280 ELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKS 339
Query: 294 NIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKS 353
NIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAVRKS
Sbjct: 340 NIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKS 399
Query: 354 LSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPK 413
LSDQSR IRLPFHMVEATYRVKEARKQLYSE G+HP NEE+AEATGLSMKRL AVLLSPK
Sbjct: 400 LSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPK 459
Query: 414 APRSLDQKIGINQNLKPSVCFILNLADSLIIFFPPLFIIWFMSFD 458
PRSLDQKIG+NQNLKPS +AD + + I FM D
Sbjct: 460 PPRSLDQKIGMNQNLKPSEV----IADPEAVTPEDILIKEFMRQD 500
>gi|2353173|gb|AAB69385.1| sigma factor 2 [Arabidopsis thaliana]
Length = 574
Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust.
Identities = 298/467 (63%), Positives = 351/467 (75%), Gaps = 22/467 (4%)
Query: 1 MTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIA 59
+T++LDV KLRLPS + S+++ ++RQWTY GPSTE +LA+ETL TSDEAV+
Sbjct: 49 LTSMLDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVV 108
Query: 60 AASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASI 119
AA+AEAVALARAAVKVAKDA L N +N+ ++SS S W Q TE+ERA I
Sbjct: 109 AAAAEAVALARAAVKVAKDATLFKNSNNTN------LLTSSTADKRSKWDQFTEKERAGI 162
Query: 120 IG-----DSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQV-SQSIAVRSRRQTE 173
+G D+ IV S ++ + DLE +E L E+ S S+AVRS RQTE
Sbjct: 163 LGHLAVSDNGIVSDKITASASNKESI---GDLESEKQEEVELLEEQPSVSLAVRSTRQTE 219
Query: 174 RKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRL--LTANE 231
RKARR + EK A+ + SVK+GS+ ++KR QEVD++DPLRYLR TTSSS+L LT E
Sbjct: 220 RKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLKLLTVRE 279
Query: 232 EMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMI 291
E +LSAGIQDLLKLE L+ L+ER G PTFAQWA+AAGVDQ+ LR+R+++G LCKDKMI
Sbjct: 280 EHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMI 339
Query: 292 TSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVR 351
SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAVR
Sbjct: 340 KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVR 399
Query: 352 KSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLS 411
KSLSDQSR IRLPFHMVEATYRVKEARKQLYSE G+HP NEE+AEATGLSMKRL AVLLS
Sbjct: 400 KSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLS 459
Query: 412 PKAPRSLDQKIGINQNLKPSVCFILNLADSLIIFFPPLFIIWFMSFD 458
PK PRSLD+KIG+NQNLKPS +AD + + I FM D
Sbjct: 460 PKPPRSLDRKIGMNQNLKPSEV----IADPEAVTSEDILIKEFMRQD 502
>gi|85813983|emb|CAD20831.2| sigma factor [Spinacia oleracea]
Length = 575
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 278/431 (64%), Positives = 322/431 (74%), Gaps = 9/431 (2%)
Query: 2 TTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAAA 61
T++ DVEKLRLP +E++SN+++A Q T+ +G E T+L + L +E + AA
Sbjct: 60 TSIFDVEKLRLPYVESNSNSLSAFAQSTFLSTLGSPAEVKFDTALTAKLLIENEEAVIAA 119
Query: 62 SAEAVALARAAVKVAKDAA-LMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASII 120
+A A A LM + KP SK S + AQL E E+ +
Sbjct: 120 AAAEAVALARAAAKLAKDAALMAFNSQPTKPVSKLEGQSLHFSG----AQLLENEQ---V 172
Query: 121 GDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTR 180
G E + E E +++ AD+EPT EEL+LLE ++ +SI VRS RQ ERKARR R
Sbjct: 173 GSMRNFEGS-ENSLREGDTVSEPADMEPTIEELQLLEVELDESITVRSTRQGERKARRAR 231
Query: 181 AAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQ 240
AAEK A+NV+SVK GS SR+KR SVQEVDYSDPLRYLR T+SSRLLT++EE +LSAGIQ
Sbjct: 232 AAEKVASNVVSVKVGSNSRKKRTSVQEVDYSDPLRYLRGATNSSRLLTSSEETELSAGIQ 291
Query: 241 DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVIS 300
DLLKLE L + L R G SP+F QWAAAAG+DQR LRRRLN+G CKDKMI SN+RLVIS
Sbjct: 292 DLLKLEKLHDELKVRFGKSPSFVQWAAAAGIDQRTLRRRLNHGTFCKDKMIKSNVRLVIS 351
Query: 301 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 360
IAKNYQG+GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT
Sbjct: 352 IAKNYQGSGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 411
Query: 361 IRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQ 420
IRLPFHMVEATYRVKEARKQL SENG+ PNNEEVAEATGLSMKRL AVL++PKAPRSLDQ
Sbjct: 412 IRLPFHMVEATYRVKEARKQLLSENGKQPNNEEVAEATGLSMKRLTAVLMTPKAPRSLDQ 471
Query: 421 KIGINQNLKPS 431
KIG N NLKPS
Sbjct: 472 KIGFNMNLKPS 482
>gi|357467593|ref|XP_003604081.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
gi|355493129|gb|AES74332.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
Length = 572
Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust.
Identities = 220/286 (76%), Positives = 253/286 (88%), Gaps = 1/286 (0%)
Query: 145 DLEPTHEELKLLEEQV-SQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRP 203
D EPT EEL+ +EEQ+ SI RS RQTERKARR RA+ KAA N++S +SGST+R+KR
Sbjct: 192 DDEPTSEELEDVEEQLYDTSIDARSGRQTERKARRVRASGKAATNIVSFRSGSTTRKKRV 251
Query: 204 SVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFA 263
QEVDYSDPLRYLR TT ++RLLT +EE++ S GIQDL+KLE L+E L+E+CGG PTFA
Sbjct: 252 RTQEVDYSDPLRYLRTTTRTTRLLTTSEEIKFSEGIQDLIKLEKLQEDLAEKCGGQPTFA 311
Query: 264 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 323
QWA AGVDQ+ LR+RLNYG+ CK+KMI SNIRLVIS+AKNYQG+GM+LQDLVQEGCRGL
Sbjct: 312 QWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGL 371
Query: 324 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYS 383
VRGAEK+DASKGFKFSTYAHWWIKQAVRKSLS QSRTIRLPFHMV ATY+VKEARKQLYS
Sbjct: 372 VRGAEKYDASKGFKFSTYAHWWIKQAVRKSLSVQSRTIRLPFHMVGATYKVKEARKQLYS 431
Query: 384 ENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLK 429
ENGR P++EEVAEATGLSMKRL AVLL+PKAPRSL+QK+GINQ+LK
Sbjct: 432 ENGRQPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKVGINQSLK 477
>gi|449499005|ref|XP_004160694.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase sigma factor
sigB-like [Cucumis sativus]
Length = 286
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 166/191 (86%), Positives = 176/191 (92%)
Query: 241 DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVIS 300
DLLKLE L+E L ER G PTFAQWAAAAGV+QR LR+RLNYG LCKDKMI SNIRLVIS
Sbjct: 3 DLLKLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVIS 62
Query: 301 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 360
I KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQSRT
Sbjct: 63 IXKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRT 122
Query: 361 IRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQ 420
IRLPFHMVEATYRVKEARKQL ENGRHP+++E+AEA GLSMKRL AVL++PKAPRSL+Q
Sbjct: 123 IRLPFHMVEATYRVKEARKQLLHENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQ 182
Query: 421 KIGINQNLKPS 431
KIGINQNLKPS
Sbjct: 183 KIGINQNLKPS 193
>gi|32351878|dbj|BAC78528.1| plastid sigma factor 2A [Oryza sativa Japonica Group]
Length = 564
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 155/261 (59%), Positives = 196/261 (75%), Gaps = 1/261 (0%)
Query: 163 SIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTS 222
SIAV+S RQTE +ARRTRAA KAA V + +TS +K+ S ++PL L T
Sbjct: 201 SIAVKSARQTEGRARRTRAAIKAATIVRTSPKPATSSKKKRSKGASSGTNPLGSLWKMTG 260
Query: 223 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 282
RLLTA EE++ S GIQDLLKLE ++ L+E GG PTFAQWA AAGVD+R LR+RL++
Sbjct: 261 R-RLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDH 319
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 342
GI CK++M+TSN+RLVISIA+ ++G GM L DL+QEG +GL+RGAEKFDASKGF+FSTY+
Sbjct: 320 GIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGLIRGAEKFDASKGFRFSTYS 379
Query: 343 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSM 402
HWWIKQA+RKS+S+QS+ RLP HMVEA+YRVKE K+L + R P NEE+A TG+ +
Sbjct: 380 HWWIKQAMRKSVSEQSQIFRLPAHMVEASYRVKECIKRLRRKLKRRPTNEEIAADTGMPI 439
Query: 403 KRLHAVLLSPKAPRSLDQKIG 423
KR+ A + PK SLD KIG
Sbjct: 440 KRVEAAVNLPKYSVSLDSKIG 460
>gi|162458688|ref|NP_001104923.1| sigma factor SIG2A [Zea mays]
gi|4336606|gb|AAD17854.1| sigma factor SIG2A [Zea mays]
Length = 539
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 151/265 (56%), Positives = 198/265 (74%), Gaps = 1/265 (0%)
Query: 159 QVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLR 218
Q +++IAV+S RQ+ERKARRTRAA KA+ + + + + S +K+ S +PL L
Sbjct: 172 QYTENIAVKSARQSERKARRTRAAIKASTTLHASQKVALSSKKKRSKGSSSSMNPLGSLW 231
Query: 219 ATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRR 278
T RLLTA EE++ S GIQDLLKLE ++ L E GG PTF+QWA AAGVD++ LR+
Sbjct: 232 KMTGR-RLLTAKEEVEFSEGIQDLLKLEAIQAELIEYNGGQPTFSQWATAAGVDEKTLRK 290
Query: 279 RLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKF 338
RLNYGI CK++M+TSN+RLVISIA+ ++G GM+ DL+QEG +GL+RGAEKFD+SKGF+F
Sbjct: 291 RLNYGIYCKNRMVTSNVRLVISIAREFEGPGMDFYDLIQEGMQGLIRGAEKFDSSKGFRF 350
Query: 339 STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEAT 398
STY+HWWIKQA+RKS+S+QS+ RLP HMVEA+YRVKE K+L + R P NEE+A T
Sbjct: 351 STYSHWWIKQAMRKSVSEQSQIFRLPAHMVEASYRVKECTKRLRRKLRRRPTNEEIAVDT 410
Query: 399 GLSMKRLHAVLLSPKAPRSLDQKIG 423
G+ +KR+ A + PK SLD KIG
Sbjct: 411 GIPIKRVEAAVNLPKYSVSLDSKIG 435
>gi|413920797|gb|AFW60729.1| sigma factor SIG2A [Zea mays]
Length = 539
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 151/265 (56%), Positives = 198/265 (74%), Gaps = 1/265 (0%)
Query: 159 QVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLR 218
Q +++IAV+S RQ+ERKARRTRAA KA+ + + + + S +K+ S +PL L
Sbjct: 172 QYTENIAVKSARQSERKARRTRAAIKASTTLHASQKVALSSKKKRSKGSSSSMNPLGSLW 231
Query: 219 ATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRR 278
T RLLTA EE++ S GIQDLLKLE ++ L E GG PTF+QWA AAGVD++ LR+
Sbjct: 232 KMTGR-RLLTAKEEVEFSEGIQDLLKLEAIQAELIEYNGGQPTFSQWATAAGVDEKTLRK 290
Query: 279 RLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKF 338
RLNYGI CK++M+TSN+RLVISIA+ ++G GM+ DL+QEG +GL+RGAEKFD+SKGF+F
Sbjct: 291 RLNYGIYCKNRMVTSNVRLVISIAREFEGPGMDFYDLIQEGMQGLIRGAEKFDSSKGFRF 350
Query: 339 STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEAT 398
STY+HWWIKQA+RKS+S+QS+ RLP HMVEA+YRVKE K+L + R P NEE+A T
Sbjct: 351 STYSHWWIKQAMRKSVSEQSQIFRLPAHMVEASYRVKECTKRLRRKLRRRPTNEEIAVDT 410
Query: 399 GLSMKRLHAVLLSPKAPRSLDQKIG 423
G+ +KR+ A + PK SLD KIG
Sbjct: 411 GIPIKRVEAAVNLPKYSVSLDSKIG 435
>gi|326518320|dbj|BAJ88189.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326533296|dbj|BAJ93620.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 552
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 152/271 (56%), Positives = 203/271 (74%), Gaps = 10/271 (3%)
Query: 157 EEQVSQSIAVRSRRQTERKARRTRAAEKAAANVM-SVKSGSTSRRKR---PSVQEVDYSD 212
++Q +++IAV+S RQ+ER+ARRTRA KAA V S+K ++S++KR PS +
Sbjct: 184 DKQDAENIAVKSARQSERRARRTRATMKAAITVRGSLKLVTSSKKKRSKGPSTM-----N 238
Query: 213 PLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD 272
PL L T +LLTA EE++LS GIQDLLKLE ++ L+E GG PTF QWAAAAG D
Sbjct: 239 PLGSLWKMTGR-KLLTAKEEVELSNGIQDLLKLEAIQGELAEYNGGQPTFPQWAAAAGTD 297
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+ LR+RL++GI CK++M+TSN+RLVISIA+ ++G G+ L DL+QEG +GL+RGAEKFDA
Sbjct: 298 ENTLRKRLDHGIHCKNRMVTSNVRLVISIAREFEGPGLELYDLIQEGMQGLIRGAEKFDA 357
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
SKGF+FSTY+HWWIKQA+RKS+S+Q++ RLP HMVEA+YRVKE K+L + R P+NE
Sbjct: 358 SKGFRFSTYSHWWIKQAMRKSVSEQTQIFRLPAHMVEASYRVKECTKRLRRKLKRRPSNE 417
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
E+A G+ +KR+ A + PK SLD KIG
Sbjct: 418 EIAVDIGMPVKRVEAAVSLPKYSVSLDSKIG 448
>gi|242041441|ref|XP_002468115.1| hypothetical protein SORBIDRAFT_01g039810 [Sorghum bicolor]
gi|241921969|gb|EER95113.1| hypothetical protein SORBIDRAFT_01g039810 [Sorghum bicolor]
Length = 528
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 141/268 (52%), Positives = 190/268 (70%), Gaps = 9/268 (3%)
Query: 161 SQSIAVRSRRQTERKARRTRAAEKAAANVMS---VKSGSTSRRKRPSVQEVDYSDPLRYL 217
S ++AV+S R+TERKARR RAA KAA S V + ST +++ Q PL
Sbjct: 165 SIAVAVKSARRTERKARRVRAAMKAAKCFSSRNAVGASSTRKKRLKGCQ-----TPLGCF 219
Query: 218 RATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELR 277
T RLLTA +E++ S GIQDLLKLE +++ +++ GG PTF+QWAAAAG D+ LR
Sbjct: 220 YKMTGP-RLLTAEQEVEFSEGIQDLLKLEAIQKEVAQYNGGEPTFSQWAAAAGTDENTLR 278
Query: 278 RRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK 337
RRLN+G+ CK++M+ SN+RLVISIAK ++G GM DL+QEG +GL+RGAEKFDASKGF+
Sbjct: 279 RRLNHGVYCKNRMVKSNVRLVISIAKEHEGPGMEFSDLIQEGMQGLIRGAEKFDASKGFR 338
Query: 338 FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEA 397
FSTY+HWWIKQA+RKS+ +Q++ IRLP HM EA+ RVKE ++L E R P+NEE+A
Sbjct: 339 FSTYSHWWIKQAIRKSVLEQTQIIRLPAHMAEASSRVKECCRRLRRELKRLPSNEEIAVD 398
Query: 398 TGLSMKRLHAVLLSPKAPRSLDQKIGIN 425
TG++++R+ A + PK S K+G
Sbjct: 399 TGMTIRRVEAAMSLPKYSVSFTSKVGCT 426
>gi|62734062|gb|AAX96171.1| Sigma-70 region 3, putative [Oryza sativa Japonica Group]
gi|125589330|gb|EAZ29680.1| hypothetical protein OsJ_13741 [Oryza sativa Japonica Group]
Length = 563
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 156/261 (59%), Positives = 197/261 (75%), Gaps = 1/261 (0%)
Query: 163 SIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTS 222
SIAV+S RQTER+ARRTRAA KAA V + +TS +K+ S ++PL L T
Sbjct: 201 SIAVKSARQTERRARRTRAAIKAATIVRTSPKPATSSKKKRSKGASSGTNPLGSLWKMTG 260
Query: 223 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 282
RLLTA EE++ S GIQDLLKLE ++ L+E GG PTFAQWA AAGVD+R LR+RL++
Sbjct: 261 R-RLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDH 319
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 342
GI CK++M+TSN+RLVISIA+ ++G GM L DL+QEG +GL+RGAEKFDASKGF+FSTY+
Sbjct: 320 GIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGLIRGAEKFDASKGFRFSTYS 379
Query: 343 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSM 402
HWWIKQA+RKS+S+QS+ RLP HMVEA+YRVKE K+L + R P NEE+A TG+ +
Sbjct: 380 HWWIKQAMRKSVSEQSQIFRLPAHMVEASYRVKECIKRLRRKLKRRPTNEEIAADTGMPI 439
Query: 403 KRLHAVLLSPKAPRSLDQKIG 423
KR+ A + PK SLD KIG
Sbjct: 440 KRVEAAVNLPKYSVSLDSKIG 460
>gi|297611772|ref|NP_001067832.2| Os11g0448400 [Oryza sativa Japonica Group]
gi|62701714|gb|AAX92787.1| Sigma-70 region 3, putative [Oryza sativa Japonica Group]
gi|108864350|gb|ABA93405.2| Sigma-70 region 3 family protein, expressed [Oryza sativa Japonica
Group]
gi|255680064|dbj|BAF28195.2| Os11g0448400 [Oryza sativa Japonica Group]
Length = 564
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 156/261 (59%), Positives = 197/261 (75%), Gaps = 1/261 (0%)
Query: 163 SIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTS 222
SIAV+S RQTER+ARRTRAA KAA V + +TS +K+ S ++PL L T
Sbjct: 201 SIAVKSARQTERRARRTRAAIKAATIVRTSPKPATSSKKKRSKGASSGTNPLGSLWKMTG 260
Query: 223 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 282
RLLTA EE++ S GIQDLLKLE ++ L+E GG PTFAQWA AAGVD+R LR+RL++
Sbjct: 261 R-RLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDH 319
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 342
GI CK++M+TSN+RLVISIA+ ++G GM L DL+QEG +GL+RGAEKFDASKGF+FSTY+
Sbjct: 320 GIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGLIRGAEKFDASKGFRFSTYS 379
Query: 343 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSM 402
HWWIKQA+RKS+S+QS+ RLP HMVEA+YRVKE K+L + R P NEE+A TG+ +
Sbjct: 380 HWWIKQAMRKSVSEQSQIFRLPAHMVEASYRVKECIKRLRRKLKRRPTNEEIAADTGMPI 439
Query: 403 KRLHAVLLSPKAPRSLDQKIG 423
KR+ A + PK SLD KIG
Sbjct: 440 KRVEAAVNLPKYSVSLDSKIG 460
>gi|218194307|gb|EEC76734.1| hypothetical protein OsI_14770 [Oryza sativa Indica Group]
Length = 563
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 156/261 (59%), Positives = 197/261 (75%), Gaps = 1/261 (0%)
Query: 163 SIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTS 222
SIAV+S RQTER+ARRTRAA KAA V + +TS +K+ S ++PL L T
Sbjct: 200 SIAVKSARQTERRARRTRAAIKAATIVRTSPKPATSSKKKRSKGASSGTNPLGSLWKMTG 259
Query: 223 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 282
RLLTA EE++ S GIQDLLKLE ++ L+E GG PTFAQWA AAGVD+R LR+RL++
Sbjct: 260 R-RLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDH 318
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 342
GI CK++M+TSN+RLVISIA+ ++G GM L DL+QEG +GL+RGAEKFDASKGF+FSTY+
Sbjct: 319 GIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGLIRGAEKFDASKGFRFSTYS 378
Query: 343 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSM 402
HWWIKQA+RKS+S+QS+ RLP HMVEA+YRVKE K+L + R P NEE+A TG+ +
Sbjct: 379 HWWIKQAMRKSVSEQSQIFRLPAHMVEASYRVKECIKRLRRKLKRRPTNEEIAADTGMPI 438
Query: 403 KRLHAVLLSPKAPRSLDQKIG 423
KR+ A + PK SLD KIG
Sbjct: 439 KRVEAAVNLPKYSVSLDSKIG 459
>gi|357156833|ref|XP_003577591.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 552
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 158/296 (53%), Positives = 212/296 (71%), Gaps = 8/296 (2%)
Query: 132 EEYSEQQPLNKSADLEPTH----EELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAA 187
+EYS+ L DLE +H +E++L + Q +SIAV+S RQ+ER+ARRTRAA KAA
Sbjct: 157 DEYSDDVLLE---DLESSHGVLNDEVELDDTQDYKSIAVKSERQSERRARRTRAAIKAAT 213
Query: 188 NVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEG 247
V S + ++S +K+ S +PL L T +LLTA EE++LS GIQDLLKLE
Sbjct: 214 TVRSSQKLASSSKKKRSKGPTTSMNPLGSLWKLTGR-KLLTAKEEVELSNGIQDLLKLEA 272
Query: 248 LREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQG 307
++ L+E G PTF QWAAAAG D++ LR+RL +GI K++M+TSN+RLVISIA+ ++G
Sbjct: 273 IQAELAEYSGCQPTFPQWAAAAGTDEKTLRKRLAHGIYSKNRMVTSNVRLVISIAREFEG 332
Query: 308 AGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHM 367
G+ L DL+QEG +GL+RGAEKFDASKGF+FSTY+HWWIKQA+RKS+S+Q++ RLP HM
Sbjct: 333 PGLELYDLIQEGMQGLIRGAEKFDASKGFRFSTYSHWWIKQAMRKSVSEQTQIFRLPAHM 392
Query: 368 VEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
VEA+YRVKE ++L R P+NEE+A G+ +KR+ A + PK SLD KIG
Sbjct: 393 VEASYRVKECTRRLRRTLQRRPSNEEIAVDIGMPVKRVEAAVNLPKYSVSLDSKIG 448
>gi|115452175|ref|NP_001049688.1| Os03g0271100 [Oryza sativa Japonica Group]
gi|29893614|gb|AAP06868.1| unknown protein [Oryza sativa Japonica Group]
gi|32351880|dbj|BAC78529.1| plastid sigma factor 2B [Oryza sativa Japonica Group]
gi|108707414|gb|ABF95209.1| Sigma-70 region 3 family protein, expressed [Oryza sativa Japonica
Group]
gi|113548159|dbj|BAF11602.1| Os03g0271100 [Oryza sativa Japonica Group]
gi|215704451|dbj|BAG93885.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765869|dbj|BAG87566.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 540
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 142/272 (52%), Positives = 189/272 (69%), Gaps = 8/272 (2%)
Query: 157 EEQVSQSIAVRSRRQTERKARRTRAAE---KAAANVMSVKSGSTSRRKRPSVQEVDYSDP 213
+EQ Q +AV+S RQ+ER+ARR RAA K+ + V + S++R+KR P
Sbjct: 172 DEQCVQGVAVKSVRQSERRARRVRAAMKAAKSFSGRNPVAASSSARKKRLK----GCRSP 227
Query: 214 LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ 273
L T RLLTA +E++ S GIQDLLKLE +++ L+ GG PTF+QWA AAG D+
Sbjct: 228 LGCFYKMTGR-RLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDE 286
Query: 274 RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
LR+RLNYGI CK+ M+ SN+RLVISIA+ ++G GM DL+QEG +GLVRGAEKFDAS
Sbjct: 287 NTLRKRLNYGISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQEGIQGLVRGAEKFDAS 346
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGF+FSTY+HWWIKQA+RKS+ +Q++ IRLP HM EA+ RVKE R++L + R P NEE
Sbjct: 347 KGFRFSTYSHWWIKQAIRKSVLEQTQIIRLPAHMAEASSRVKECRRRLRRQLKRLPTNEE 406
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGIN 425
+A TG+ ++R+ A + PK SL K+G
Sbjct: 407 IASDTGMPLRRVEAAMSLPKYTVSLTSKVGCT 438
>gi|125585746|gb|EAZ26410.1| hypothetical protein OsJ_10293 [Oryza sativa Japonica Group]
Length = 497
Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 142/272 (52%), Positives = 189/272 (69%), Gaps = 8/272 (2%)
Query: 157 EEQVSQSIAVRSRRQTERKARRTRAAE---KAAANVMSVKSGSTSRRKRPSVQEVDYSDP 213
+EQ Q +AV+S RQ+ER+ARR RAA K+ + V + S++R+KR P
Sbjct: 129 DEQCVQGVAVKSVRQSERRARRVRAAMKAAKSFSGRNPVAASSSARKKRLK----GCRSP 184
Query: 214 LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ 273
L T RLLTA +E++ S GIQDLLKLE +++ L+ GG PTF+QWA AAG D+
Sbjct: 185 LGCFYKMTGR-RLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDE 243
Query: 274 RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
LR+RLNYGI CK+ M+ SN+RLVISIA+ ++G GM DL+QEG +GLVRGAEKFDAS
Sbjct: 244 NTLRKRLNYGISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQEGIQGLVRGAEKFDAS 303
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGF+FSTY+HWWIKQA+RKS+ +Q++ IRLP HM EA+ RVKE R++L + R P NEE
Sbjct: 304 KGFRFSTYSHWWIKQAIRKSVLEQTQIIRLPAHMAEASSRVKECRRRLRRQLKRLPTNEE 363
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGIN 425
+A TG+ ++R+ A + PK SL K+G
Sbjct: 364 IASDTGMPLRRVEAAMSLPKYTVSLTSKVGCT 395
>gi|125543279|gb|EAY89418.1| hypothetical protein OsI_10924 [Oryza sativa Indica Group]
Length = 540
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 142/272 (52%), Positives = 189/272 (69%), Gaps = 8/272 (2%)
Query: 157 EEQVSQSIAVRSRRQTERKARRTRAAE---KAAANVMSVKSGSTSRRKRPSVQEVDYSDP 213
+EQ Q +AV+S RQ+ER+ARR RAA K+ + V + S++R+KR P
Sbjct: 172 DEQCVQGVAVKSVRQSERRARRVRAAMKAAKSFSGRNPVAASSSARKKRLK----GCRSP 227
Query: 214 LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ 273
L T RLLTA +E++ S GIQDLLKLE +++ L+ GG PTF+QWA AAG D+
Sbjct: 228 LGCFYKMTGW-RLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDE 286
Query: 274 RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
LR+RLNYGI CK+ M+ SN+RLVISIA+ ++G GM DL+QEG +GLVRGAEKFDAS
Sbjct: 287 NTLRKRLNYGISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQEGIQGLVRGAEKFDAS 346
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGF+FSTY+HWWIKQA+RKS+ +Q++ IRLP HM EA+ RVKE R++L + R P NEE
Sbjct: 347 KGFRFSTYSHWWIKQAIRKSVLEQTQIIRLPAHMAEASSRVKECRRRLRRQLKRLPTNEE 406
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGIN 425
+A TG+ ++R+ A + PK SL K+G
Sbjct: 407 IASDTGMPLRRVEAAMSLPKYTVSLTSKVGCT 438
>gi|162458864|ref|NP_001104924.1| sigma-like factor2B [Zea mays]
gi|4336608|gb|AAD17855.1| sigma factor SIG2B [Zea mays]
Length = 527
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 170/394 (43%), Positives = 235/394 (59%), Gaps = 28/394 (7%)
Query: 36 PSTEENLGTSLATETLTSDEAVIAAASAEAVALARAAVKVAKDAALMV-NHHNSAKPKSK 94
PS L E L + EAV+AAA+ + +L A +VA + A M N H +A P
Sbjct: 56 PSPHRTLPGCFG-EALLNKEAVVAAAAGKP-SLWLAQAEVAGEVARMAQNDHPAALPPRD 113
Query: 95 PAISSSADTNTSMWAQLTERERASIIGDSV-IVEAAPEEEYSEQQPLNKSADLEPTHEEL 153
DT S ++ R + +VE EE+S D + H
Sbjct: 114 -------DTVDSFLSREVLRSEVGLDARRAGLVEMLEGEEHSSIFSDESEDDDDGGH--- 163
Query: 154 KLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVK--SGSTSRRKRPSVQEVDYS 211
S ++ V+S R++ER+ARR RAA K A S+K S++RRKR
Sbjct: 164 -------SIAVTVKSARRSERRARRVRAAMKTAKCSSSMKPVGASSTRRKRLK----GCL 212
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
PL L T RLLTA +E++ S GIQDLLKLE +++ +++ G PTF+QWAAAAG
Sbjct: 213 TPLGCLYKMTGP-RLLTAEQEVEFSEGIQDLLKLEAIQKEVAQYNAGEPTFSQWAAAAGT 271
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
D+ LRRRLN+G+ CK++M+ SN+RLVISIAK ++G GM DL+Q+G +GL+RGAEKFD
Sbjct: 272 DENTLRRRLNHGVYCKNRMVKSNVRLVISIAKEHEGPGMEFSDLIQDGMQGLIRGAEKFD 331
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
ASKGF+FSTY+HWWIKQA+RKS+ +Q++ IRLP HM EA+ RVKE ++L E R P+N
Sbjct: 332 ASKGFRFSTYSHWWIKQAIRKSVLEQTQIIRLPAHMAEASSRVKECCRRLGRELKRLPSN 391
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGIN 425
EE+A TG++++R+ A + PK S K+G
Sbjct: 392 EEIAVDTGMTIRRVEAAMSLPKYSVSFTSKVGCT 425
>gi|323388685|gb|ADX60147.1| SIGMA70-like transcription factor [Zea mays]
Length = 428
Score = 250 bits (639), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 122/230 (53%), Positives = 166/230 (72%), Gaps = 5/230 (2%)
Query: 196 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 255
S++RRKR PL L T RLLTA +E++ S GIQDLLKLE +++ +++
Sbjct: 102 SSTRRKRLK----GCLTPLGCLYKMTGP-RLLTAEQEVEFSEGIQDLLKLEAIQKEVAQY 156
Query: 256 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 315
G PTF+QWAAAAG D+ LRRRLN+G+ CK++M+ SN+RLVISIAK ++G GM DL
Sbjct: 157 NAGEPTFSQWAAAAGTDENTLRRRLNHGVYCKNRMVKSNVRLVISIAKEHEGPGMEFSDL 216
Query: 316 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVK 375
+Q+G +GL+RGAEKFDASKGF+FSTY+HWWIKQA+RKS+ +Q++ IRLP HM EA+ RVK
Sbjct: 217 IQDGMQGLIRGAEKFDASKGFRFSTYSHWWIKQAIRKSVLEQTQIIRLPAHMAEASSRVK 276
Query: 376 EARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGIN 425
E ++L E R P+NEE+A TG++++R+ A + PK S K+G
Sbjct: 277 ECCRRLGRELKRLPSNEEIAVDTGMTIRRVEAAMSLPKYSVSFTSKVGCT 326
>gi|414591842|tpg|DAA42413.1| TPA: sigma factor SIG2B [Zea mays]
gi|414866057|tpg|DAA44614.1| TPA: sigma factor SIG2B [Zea mays]
gi|414872289|tpg|DAA50846.1| TPA: sigma factor SIG2B [Zea mays]
Length = 528
Score = 250 bits (639), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 123/236 (52%), Positives = 167/236 (70%), Gaps = 5/236 (2%)
Query: 190 MSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR 249
M S++RRKR PL L T RLLTA +E++ S GIQDLLKLE ++
Sbjct: 196 MKPVGASSTRRKRLK----GCLTPLGCLYKMTGP-RLLTAEQEVEFSEGIQDLLKLEAIQ 250
Query: 250 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 309
+ +++ G PTF+QWAAAAG D+ LRRRLN+G+ CK++M+ SN+RLVISIAK ++G G
Sbjct: 251 KEVAQYNAGEPTFSQWAAAAGTDENTLRRRLNHGVYCKNRMVKSNVRLVISIAKEHEGPG 310
Query: 310 MNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVE 369
M DL+Q+G +GL+RGAEKFDASKGF+FSTY+HWWIKQA+RKS+ +Q++ IRLP HM E
Sbjct: 311 MEFSDLIQDGMQGLIRGAEKFDASKGFRFSTYSHWWIKQAIRKSVLEQTQIIRLPAHMAE 370
Query: 370 ATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGIN 425
A+ RVKE ++L E R P+NEE+A TG++++R+ A + PK S K+G
Sbjct: 371 ASSRVKECCRRLGRELKRLPSNEEIAVDTGMTIRRVEAAMSLPKYSVSFTSKVGCT 426
>gi|168012500|ref|XP_001758940.1| plastid sigma facor SIG2 [Physcomitrella patens subsp. patens]
gi|12697780|dbj|BAB21618.1| PpSIG2 [Physcomitrella patens]
gi|14669832|dbj|BAB62008.1| PpSIG2 [Physcomitrella patens]
gi|162690077|gb|EDQ76446.1| plastid sigma facor SIG2 [Physcomitrella patens subsp. patens]
Length = 579
Score = 250 bits (639), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 121/216 (56%), Positives = 156/216 (72%), Gaps = 2/216 (0%)
Query: 209 DYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
D SDP+R YLR ++LLTA EE+ LS IQDLLKLE ++ L G + T +W+
Sbjct: 259 DPSDPVRAYLR-DIGRTKLLTAREEVDLSHQIQDLLKLENIKSNLEREIGRNATIGEWSR 317
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
A G++Q RL G KDKM+ SN+RLV+SIAKNYQG GM LQDL+QEG GLVRGA
Sbjct: 318 AVGMEQNAFEARLKKGRFAKDKMVNSNLRLVVSIAKNYQGRGMTLQDLIQEGSMGLVRGA 377
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
EKFD +KGFKFSTYAHWWI+QAV +S++DQSRTIRLP H+ E R+ +A++ L E+GR
Sbjct: 378 EKFDPTKGFKFSTYAHWWIRQAVTRSIADQSRTIRLPIHLYEVISRINKAKRMLVQEHGR 437
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
NEEVAE GL++++L +V+ S KAP S+++ IG
Sbjct: 438 EARNEEVAELVGLTVEKLKSVVKSAKAPGSMERPIG 473
>gi|407327703|dbj|BAM45409.1| sigma factor 2 [Marchantia polymorpha]
Length = 615
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 128/268 (47%), Positives = 188/268 (70%), Gaps = 5/268 (1%)
Query: 161 SQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLR-YLRA 219
S +IAVRS R+ ER +R RA KA + + S +++ +P+ D DP+R YLR
Sbjct: 255 SYNIAVRSNRRRERLLKRERALVKADKAATAPPTTSKAKKSQPAY---DPQDPVRAYLR- 310
Query: 220 TTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRR 279
++LLT++EE++L+ GIQDLL++E ++ L E+ G PT +WA A G ++ L R
Sbjct: 311 DIGKTKLLTSSEEIELAEGIQDLLRVESVKNDLREQMGREPTLMEWAKAVGTERHSLESR 370
Query: 280 LNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFS 339
+ G CKD+M+ SN+RLV+SIAK YQG GM +QDL+QEG GL+RGAEKFD ++GFKFS
Sbjct: 371 IKSGQACKDRMVNSNLRLVVSIAKRYQGRGMTIQDLIQEGSMGLIRGAEKFDHTRGFKFS 430
Query: 340 TYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATG 399
TYAHWWI+QA+ ++++DQSRTIRLP H+ E R+ +A+ L +E+GR P +EEVAE G
Sbjct: 431 TYAHWWIRQAITRAIADQSRTIRLPVHVYELLSRITKAKSMLAAEHGRAPRDEEVAELVG 490
Query: 400 LSMKRLHAVLLSPKAPRSLDQKIGINQN 427
LS+++L V+ S ++P+S++ +G N +
Sbjct: 491 LSIEKLKMVIKSARSPKSMEFPVGKNND 518
>gi|148907004|gb|ABR16646.1| unknown [Picea sitchensis]
Length = 592
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 140/274 (51%), Positives = 190/274 (69%), Gaps = 2/274 (0%)
Query: 159 QVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDY-SDPLRYL 217
Q + +I RS RQ ER+ARR RA+EKAA+ ++ +SR+ + ++ + SD +R L
Sbjct: 227 QKTYNITARSSRQMERRARRARASEKAASVASAISPTRSSRKGKKAISSKGHISDSIRLL 286
Query: 218 RATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELR 277
R SSSRLLTA+EE++LS GIQDL+KL+ +R E+ G PT AQWA GVDQ+ L+
Sbjct: 287 R-DWSSSRLLTASEEVELSRGIQDLIKLDRIRAKYKEKTGKEPTLAQWAEVIGVDQKTLK 345
Query: 278 RRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK 337
RL G DK+I N+RLVIS+AKNYQ G++LQDL+Q G GL+R AEKFD S+GFK
Sbjct: 346 MRLEVGRDSFDKIINCNLRLVISVAKNYQNRGLSLQDLIQAGSMGLMRSAEKFDYSRGFK 405
Query: 338 FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEA 397
FSTYA+WWI+Q++ K+L++QSRTIRLP H+VE+ R++ A + LY E+ R P EEVAE
Sbjct: 406 FSTYAYWWIRQSITKALTEQSRTIRLPVHIVESMTRIRTAWRLLYQEHKRDPTKEEVAEV 465
Query: 398 TGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPS 431
G+SM RL V + P SLD+ +G + + K S
Sbjct: 466 AGISMTRLRHVTRCSRVPTSLDRCVGKDMDEKFS 499
>gi|148909485|gb|ABR17840.1| unknown [Picea sitchensis]
Length = 495
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 140/274 (51%), Positives = 190/274 (69%), Gaps = 2/274 (0%)
Query: 159 QVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDY-SDPLRYL 217
Q + +I RS RQ ER+ARR RA+EKAA+ ++ +SR+ + ++ + SD +R L
Sbjct: 130 QKTYNITARSSRQMERRARRARASEKAASVASAISPTRSSRKGKKAISSKGHISDSIRLL 189
Query: 218 RATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELR 277
R SSSRLLTA+EE++LS GIQDL+KL+ +R E+ G PT AQWA GVDQ+ L+
Sbjct: 190 R-DWSSSRLLTASEEVELSRGIQDLIKLDRIRAKYKEKTGKEPTLAQWAEVIGVDQKTLK 248
Query: 278 RRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK 337
RL G DK+I N+RLVIS+AKNYQ G++LQDL+Q G GL+R AEKFD S+GFK
Sbjct: 249 MRLEVGRDSFDKIINCNLRLVISVAKNYQNRGLSLQDLIQAGSMGLMRSAEKFDYSRGFK 308
Query: 338 FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEA 397
FSTYA+WWI+Q++ K+L++QSRTIRLP H+VE+ R++ A + LY E+ R P EEVAE
Sbjct: 309 FSTYAYWWIRQSITKALTEQSRTIRLPVHIVESMTRIRTAWRLLYQEHKRDPTKEEVAEV 368
Query: 398 TGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPS 431
G+SM RL V + P SLD+ +G + + K S
Sbjct: 369 AGISMTRLRHVTRCSRVPTSLDRCVGKDMDEKFS 402
>gi|108707415|gb|ABF95210.1| Sigma-70 region 3 family protein, expressed [Oryza sativa Japonica
Group]
gi|215695353|dbj|BAG90544.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 343
Score = 247 bits (631), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 117/204 (57%), Positives = 154/204 (75%)
Query: 222 SSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLN 281
+ RLLTA +E++ S GIQDLLKLE +++ L+ GG PTF+QWA AAG D+ LR+RLN
Sbjct: 38 TGRRLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENTLRKRLN 97
Query: 282 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 341
YGI CK+ M+ SN+RLVISIA+ ++G GM DL+QEG +GLVRGAEKFDASKGF+FSTY
Sbjct: 98 YGISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQEGIQGLVRGAEKFDASKGFRFSTY 157
Query: 342 AHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLS 401
+HWWIKQA+RKS+ +Q++ IRLP HM EA+ RVKE R++L + R P NEE+A TG+
Sbjct: 158 SHWWIKQAIRKSVLEQTQIIRLPAHMAEASSRVKECRRRLRRQLKRLPTNEEIASDTGMP 217
Query: 402 MKRLHAVLLSPKAPRSLDQKIGIN 425
++R+ A + PK SL K+G
Sbjct: 218 LRRVEAAMSLPKYTVSLTSKVGCT 241
>gi|357112914|ref|XP_003558250.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 537
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 116/204 (56%), Positives = 154/204 (75%)
Query: 222 SSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLN 281
S+ RLLTA +E++LS GIQD LKLE +++ ++ GG PTF QWAAAAG D+ LR+RL+
Sbjct: 232 SARRLLTAKQEVELSEGIQDFLKLEAIQKEVAHYNGGEPTFTQWAAAAGTDENTLRKRLS 291
Query: 282 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 341
YGI CK+ M+ SN+RLVISIAK ++G G DL+QEG +GL+RGAEKFDASKGF+FSTY
Sbjct: 292 YGIYCKNMMVKSNVRLVISIAKEFEGPGTEFSDLIQEGMQGLIRGAEKFDASKGFRFSTY 351
Query: 342 AHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLS 401
+HWWIKQA+RKS+ +Q++ IRLP HM EA+ RVKE R++L + R P NEE+A TGL+
Sbjct: 352 SHWWIKQAIRKSVLEQTQIIRLPTHMAEASSRVKECRRRLRRQLNRLPTNEEIASDTGLT 411
Query: 402 MKRLHAVLLSPKAPRSLDQKIGIN 425
+R+ A + P+ SL K+G
Sbjct: 412 TRRVEAAMSLPRYSVSLSGKVGCT 435
>gi|168009564|ref|XP_001757475.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691169|gb|EDQ77532.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 591
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 112/216 (51%), Positives = 150/216 (69%), Gaps = 4/216 (1%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQ--DLLKLEGLREVLSERCGGSPTFAQWAA 267
+DP+R YLR ++LLTA+EE+ LS IQ DLL LE ++ L G P+ +W+
Sbjct: 273 TDPVRAYLR-DIGKTKLLTASEEVALSRKIQARDLLVLEKVKSDLQREIGREPSIGEWSR 331
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
A G++Q R+ G KDKM+ SN+RLV+SI KNYQG GM L DL+QEG GL+RGA
Sbjct: 332 AVGMEQNAFELRVKEGRYSKDKMVNSNLRLVVSIVKNYQGRGMTLPDLIQEGSMGLIRGA 391
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
EKFD KGFKFSTYAHWWI+QAV ++++DQSR IRLP H+ E R+ +A+K L E+GR
Sbjct: 392 EKFDPDKGFKFSTYAHWWIRQAVTRAIADQSRIIRLPIHLYEVISRINKAKKMLIQEHGR 451
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
P +EEVAE G+S+++L ++ S K P S+D+ IG
Sbjct: 452 QPRDEEVAELVGMSVEKLKFIVKSAKTPSSMDRLIG 487
>gi|168000881|ref|XP_001753144.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695843|gb|EDQ82185.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 581
Score = 224 bits (570), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 124/278 (44%), Positives = 173/278 (62%), Gaps = 11/278 (3%)
Query: 161 SQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPL-RYLRA 219
S+++AV+S R+ ER +R RA EKA ++ S + S+ + SDP+ YLR
Sbjct: 207 SRNVAVKSNRKNERFRKRERALEKAGKVAFALASSPPVPKADKSLIKHRLSDPICSYLR- 265
Query: 220 TTSSSRLLTANEEMQLSAGIQ---------DLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+S+LLTA EE+ LS IQ LKLE +R L G PT ++W+ A G
Sbjct: 266 DVKNSKLLTAFEEVALSRKIQVTTLFRFRQYTLKLEKVRAELQRDMGREPTRSEWSLAVG 325
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
++Q R+ G KDK++ SN+RLV+SI KNYQG GM L DL+Q G GL+RGAEKF
Sbjct: 326 MNQTLFELRIKEGQCAKDKLVNSNLRLVVSIVKNYQGRGMTLPDLIQRGSLGLIRGAEKF 385
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D GFKFSTYA WWI+QAV +S++DQSR IRLP H+ E R+ ++R + + GR
Sbjct: 386 DPEMGFKFSTYATWWIRQAVTRSITDQSRIIRLPVHIYEVISRINKSRMMIAEDQGRQAR 445
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNL 428
+EEVA A G+S+++L +L S + P S+DQ IG +++L
Sbjct: 446 DEEVATAVGISVEKLDFILKSARLPASMDQLIGRDKDL 483
>gi|168009782|ref|XP_001757584.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691278|gb|EDQ77641.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 583
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 107/214 (50%), Positives = 147/214 (68%), Gaps = 2/214 (0%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
SDP+R YLR ++LL+A+EE+ LS IQD+LKLE +R L G PT ++W+ A
Sbjct: 268 SDPIRSYLR-DIKRTKLLSASEEVALSRKIQDILKLEKIRAELQRDIGREPTLSEWSQAV 326
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
+DQ L R+ G KDK++ SN+RLV+SI KNYQG GM L DL+QEG GL+RGAEK
Sbjct: 327 SLDQTSLELRVKEGRSAKDKLVNSNLRLVVSIVKNYQGRGMTLPDLIQEGSLGLIRGAEK 386
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
FD G+KFSTYA WWI+QAV ++++DQSR IRLP H+ E R+ +A+ + E GR P
Sbjct: 387 FDPEMGYKFSTYATWWIRQAVTRAIADQSRIIRLPVHIYEVISRINKAKMTISQELGRQP 446
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
+EEVA G+S+++L ++ S + P S+D+ IG
Sbjct: 447 RDEEVAAMVGMSVEKLLFIVKSARPPTSMDRPIG 480
>gi|1588486|prf||2208419B RNA polymerase sigma factor
Length = 391
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 154/236 (65%), Gaps = 1/236 (0%)
Query: 193 KSGSTSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREV 251
+ TSRRK + ++ Y+ D +R RLL A EE++L+ I DLL+LE +RE
Sbjct: 61 RKAKTSRRKETATKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERMREQ 120
Query: 252 LSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMN 311
L+E PT +WA AAG+ ++ RRRL +G KDKM+ SN+RLV+SIAK Y G++
Sbjct: 121 LTEHESRVPTDKEWAEAAGMPLKDFRRRLFHGRRAKDKMVQSNLRLVVSIAKKYMNRGLS 180
Query: 312 LQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEAT 371
QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 181 FQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETI 240
Query: 372 YRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
R+K+ K L E GR P EE+AE +++++L + S + P SL+ IG ++
Sbjct: 241 SRIKKTTKILSQELGRKPTEEEIAERMEMTIEKLRFIAKSAQLPISLETPIGKEED 296
>gi|170078618|ref|YP_001735256.1| RNA polymerase sigma factor [Synechococcus sp. PCC 7002]
gi|558881|gb|AAB41506.1| SigA [Synechococcus sp. PCC 7002]
gi|169886287|gb|ACB00001.1| RNA polymerase sigma factor [Synechococcus sp. PCC 7002]
Length = 375
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 154/236 (65%), Gaps = 1/236 (0%)
Query: 193 KSGSTSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREV 251
+ TSRRK + ++ Y+ D +R RLL A EE++L+ I DLL+LE +RE
Sbjct: 45 RKAKTSRRKETATKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERMREQ 104
Query: 252 LSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMN 311
L+E PT +WA AAG+ ++ RRRL +G KDKM+ SN+RLV+SIAK Y G++
Sbjct: 105 LTEHESRVPTDKEWAEAAGMPLKDFRRRLFHGRRAKDKMVQSNLRLVVSIAKKYMNRGLS 164
Query: 312 LQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEAT 371
QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 165 FQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETI 224
Query: 372 YRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
R+K+ K L E GR P EE+AE +++++L + S + P SL+ IG ++
Sbjct: 225 SRIKKTTKILSQELGRKPTEEEIAERMEMTIEKLRFIAKSAQLPISLETPIGKEED 280
>gi|427724795|ref|YP_007072072.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427356515|gb|AFY39238.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 379
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 107/231 (46%), Positives = 150/231 (64%), Gaps = 1/231 (0%)
Query: 198 SRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERC 256
SRRK + ++ Y+ D +R RLL A EE++L+ I DLL+LE +RE L E
Sbjct: 54 SRRKESATKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERMREQLEEHE 113
Query: 257 GGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLV 316
PT +WA AAG+ ++ RRRL +G KDKM+ SN+RLV+SIAK Y G++ QDL+
Sbjct: 114 SRVPTDKEWAEAAGMPLKDFRRRLFHGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLI 173
Query: 317 QEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKE 376
QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+
Sbjct: 174 QEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKK 233
Query: 377 ARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
K L E GR P EE+A +++++L + S + P SL+ IG ++
Sbjct: 234 TTKILSQELGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED 284
>gi|308804840|ref|XP_003079732.1| SigA (ISS) [Ostreococcus tauri]
gi|116058189|emb|CAL53378.1| SigA (ISS) [Ostreococcus tauri]
Length = 525
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 106/225 (47%), Positives = 147/225 (65%), Gaps = 8/225 (3%)
Query: 201 KRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSP 260
KRPS +D +R S LL A +E++L+ IQDL+ LE +RE L E G
Sbjct: 196 KRPS------TDSMRSYLKDIGSVTLLNAGQEVELAKRIQDLMHLESIRENLIEETGPGV 249
Query: 261 TFA--QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQE 318
+ QWAAAAG++ LR+RL+ G K++MI +N+RLV+SIAK Y M+ QDL+QE
Sbjct: 250 ELSESQWAAAAGLNVSALRQRLHDGKAAKNEMIQANLRLVVSIAKKYANTNMSFQDLIQE 309
Query: 319 GCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEAR 378
GC GL+RGAEKFD +G+KFSTYAHWWI+QAV +S+SDQSRTIRLP H+ E R+ +
Sbjct: 310 GCVGLIRGAEKFDFQRGYKFSTYAHWWIRQAVTRSISDQSRTIRLPVHLFEIISRISKME 369
Query: 379 KQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
++ NGR P EE+A +S++++ + + +AP SL Q +G
Sbjct: 370 QKFALYNGRPPTLEEIASEMEMSVEKITQIKKAAQAPVSLAQTMG 414
>gi|303279757|ref|XP_003059171.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459007|gb|EEH56303.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 587
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 107/232 (46%), Positives = 151/232 (65%), Gaps = 14/232 (6%)
Query: 196 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 255
STSRR+ S++ YL+ S S LLT +E++L+ IQDL+ LEG+RE L E
Sbjct: 247 STSRRQTDSMKT--------YLKDIGSVS-LLTGEQEVELAMRIQDLVYLEGVREQLEEE 297
Query: 256 CGGSPTFAQ-----WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
++ WA AA V +REL+ RL+ G K++MI +N+RLV+SIAK Y M
Sbjct: 298 AKRRKQTSEVSNFDWAIAANVTERELKERLDAGKRAKNQMIQANLRLVVSIAKRYANKSM 357
Query: 311 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 370
+ QDL+QEGC GL+RGAEKFD +G+KFSTYAHWWI+QAV +S+SDQSRTIRLP H+ E
Sbjct: 358 SFQDLIQEGCVGLIRGAEKFDFKRGYKFSTYAHWWIRQAVTRSISDQSRTIRLPVHLFEI 417
Query: 371 TYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKI 422
R+ + +QL + GR P EE+AE +++++++ + + P SL Q +
Sbjct: 418 ISRMSKVERQLVMKYGRDPTTEEIAEVMDMTVEKINQIQKASLVPISLSQSV 469
>gi|145347899|ref|XP_001418397.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578626|gb|ABO96690.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 344
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 101/215 (46%), Positives = 143/215 (66%), Gaps = 2/215 (0%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG--GSPTFAQWAAA 268
+D +R S LL A +E++L+ IQDL+ LE +RE L E G T QWA+A
Sbjct: 14 TDSMRSYLKDIGSVTLLNAGQEVELAKRIQDLMHLESIRENLVEETGPGAEVTDYQWASA 73
Query: 269 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 328
AG++ + L +RL G K++MI +N+RLV+SIAK Y + M+ QDL+QEGC GL+RGAE
Sbjct: 74 AGLNVQALHQRLRDGKSAKNEMIQANLRLVVSIAKKYANSNMSFQDLIQEGCVGLIRGAE 133
Query: 329 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH 388
KFD +G+KFSTYAHWWI+QAV +S+SDQSRTIRLP H+ E R+ + ++ NGR+
Sbjct: 134 KFDFQRGYKFSTYAHWWIRQAVTRSISDQSRTIRLPVHLFEIISRISKMEQKFALHNGRN 193
Query: 389 PNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
P EE+A +S +++ + + +AP SL Q +G
Sbjct: 194 PTTEEIAAEMDMSAEKITQIKKAAQAPVSLAQTMG 228
>gi|428771678|ref|YP_007163468.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428685957|gb|AFZ55424.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 386
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 109/247 (44%), Positives = 154/247 (62%), Gaps = 4/247 (1%)
Query: 185 AAANVMSVKS---GSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQD 241
A+V S KS +T RR+ S ++ D +R RLL A EE++L+ I D
Sbjct: 45 GVADVSSKKSRKLSATPRRRGQSKKKPFTEDSIRVYLQEIGRIRLLRAEEEIELARQIAD 104
Query: 242 LLKLEGLREVLSERCGGSPTFAQWAAAAGV-DQRELRRRLNYGILCKDKMITSNIRLVIS 300
LL LE +R L E G PT +WA A+ + + R+ RRL+ G KDKM+ SN+RLV+S
Sbjct: 105 LLDLEYIRSTLIEHLGRVPTDEEWAIASDMPNMRQFNRRLHIGRKAKDKMVQSNLRLVVS 164
Query: 301 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 360
IAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRT
Sbjct: 165 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 224
Query: 361 IRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQ 420
IRLP H+ E R+K+ K L + GR P EE+AE +++++L + S + P SL+
Sbjct: 225 IRLPVHLYETISRIKKTTKMLSQKMGRKPTEEEIAEDMEMTIEKLRFIAKSAQLPISLET 284
Query: 421 KIGINQN 427
IG ++
Sbjct: 285 PIGKEED 291
>gi|434400420|ref|YP_007134424.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428271517|gb|AFZ37458.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 372
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 105/238 (44%), Positives = 152/238 (63%), Gaps = 1/238 (0%)
Query: 191 SVKSGSTSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR 249
+VK+ T+ R+ ++ Y+ D +R RLL A EE++L+ I DLL+LE +R
Sbjct: 40 TVKTALTAARRGERGRKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIR 99
Query: 250 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 309
E +++R P+ A+WA + E RRRL YG KDKM+ SN+RLV+SIAK Y G
Sbjct: 100 ERMADRLERYPSDAEWAEEVNMRLPEFRRRLFYGRRAKDKMVQSNLRLVVSIAKKYMNRG 159
Query: 310 MNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVE 369
++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 160 LSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYE 219
Query: 370 ATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
R+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++
Sbjct: 220 TISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED 277
>gi|440682269|ref|YP_007157064.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428679388|gb|AFZ58154.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 392
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 105/238 (44%), Positives = 152/238 (63%), Gaps = 3/238 (1%)
Query: 193 KSG--STSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR 249
KSG + SRR+ P+ ++ Y+ D +R RLL A+EE++L+ I DLL+LE +R
Sbjct: 60 KSGKAAKSRRRTPTAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVR 119
Query: 250 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 309
+ L ++ P F +WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G
Sbjct: 120 DRLQDQLEREPQFKEWAEAVELPLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRG 179
Query: 310 MNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVE 369
++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 180 LSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYE 239
Query: 370 ATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
R+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++
Sbjct: 240 TISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED 297
>gi|434405382|ref|YP_007148267.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428259637|gb|AFZ25587.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 390
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 150/237 (63%), Gaps = 2/237 (0%)
Query: 193 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
KSG + SRR+ S ++ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 59 KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 118
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
LSER P ++WAA + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 119 RLSERLERDPKDSEWAAEVQLPLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGL 178
Query: 311 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 370
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 179 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 238
Query: 371 TYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
R+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++
Sbjct: 239 ISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED 295
>gi|428206989|ref|YP_007091342.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428008910|gb|AFY87473.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 392
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 105/236 (44%), Positives = 149/236 (63%), Gaps = 3/236 (1%)
Query: 193 KSGSTSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREV 251
K G T R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 64 KGGKT--RRRAQTKKKQYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREK 121
Query: 252 LSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMN 311
LS+R P ++WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G++
Sbjct: 122 LSDRLDREPQDSEWAEAVKQNLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLS 181
Query: 312 LQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEAT 371
QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 182 FQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETI 241
Query: 372 YRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
R+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++
Sbjct: 242 SRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED 297
>gi|218245044|ref|YP_002370415.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8801]
gi|257058068|ref|YP_003135956.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8802]
gi|218165522|gb|ACK64259.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
gi|256588234|gb|ACU99120.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 379
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 102/232 (43%), Positives = 147/232 (63%)
Query: 196 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 255
S SRR+ P+ ++ D +R RLL A EE++L+ I DLL+LE +RE ++E
Sbjct: 53 SASRRRDPNKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIREKMTEH 112
Query: 256 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 315
G PT +W+ A ++ +RRL G KDKM+ SN+RLV+SIAK Y G++ QDL
Sbjct: 113 MGRFPTDLEWSQAINMEWHAFQRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDL 172
Query: 316 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVK 375
+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K
Sbjct: 173 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIK 232
Query: 376 EARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
+ K L E R P EE+A +++++L + S + P SL+ IG ++
Sbjct: 233 KTTKILSQEMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED 284
>gi|428299682|ref|YP_007137988.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428236226|gb|AFZ02016.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 389
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 103/233 (44%), Positives = 148/233 (63%)
Query: 195 GSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSE 254
G SRR+ + ++ D +R RLL A+EE++L+ I DLL+LE +RE LS+
Sbjct: 62 GVKSRRRAQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKLSQ 121
Query: 255 RCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQD 314
+ P ++WA A V + R RL+ G KDKM+ SN+RLV+SIAK Y G++ QD
Sbjct: 122 QLDRDPKDSEWAEAVQVPLPQFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQD 181
Query: 315 LVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRV 374
L+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+
Sbjct: 182 LIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRI 241
Query: 375 KEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
K+ K L E GR P EE+A +++++L + S + P SL+ IG ++
Sbjct: 242 KKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED 294
>gi|427718031|ref|YP_007066025.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427350467|gb|AFY33191.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 390
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 150/237 (63%), Gaps = 2/237 (0%)
Query: 193 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
KSG + SRR+ S ++ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 59 KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 118
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
LSE+ P ++WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 119 KLSEQLDRDPKDSEWAEAVQLPLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGL 178
Query: 311 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 370
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 179 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 238
Query: 371 TYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
R+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++
Sbjct: 239 ISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED 295
>gi|254424926|ref|ZP_05038644.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196192415|gb|EDX87379.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 404
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 108/254 (42%), Positives = 152/254 (59%), Gaps = 12/254 (4%)
Query: 175 KARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEM 233
KA+ TR A K A RR+ ++ Y+ D +R RLL A EE+
Sbjct: 67 KAKATRGAAKGKA-----------RRRTAQTKKKHYTEDSIRLYLQEIGRIRLLRAEEEI 115
Query: 234 QLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITS 293
+L+ I DLL+LE +R+ + ++ PT A WA A + RRRL G KDKM+ S
Sbjct: 116 ELARKIADLLELERIRDEIDDQLDDEPTDADWANAVDMPLPAFRRRLYQGRRAKDKMVQS 175
Query: 294 NIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKS 353
N+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++
Sbjct: 176 NLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRA 235
Query: 354 LSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPK 413
++DQSRTIRLP H+ E R+K+ K L E GR P EE+A +++++L + S +
Sbjct: 236 IADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIATRMEMTIEKLRFIAKSAQ 295
Query: 414 APRSLDQKIGINQN 427
P SL+ IG ++
Sbjct: 296 LPISLETPIGKEED 309
>gi|428214219|ref|YP_007087363.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
gi|428002600|gb|AFY83443.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
Length = 387
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 104/237 (43%), Positives = 148/237 (62%), Gaps = 1/237 (0%)
Query: 191 SVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
+ K+ ST RR +P + D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 57 ATKARSTRRRAQPKKKHY-TEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRE 115
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
L + P A+WA A + + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 116 HLCDHLHREPYDAEWADAVKMSVGQFRHRLHCGRRAKDKMVQSNLRLVVSIAKKYMNRGL 175
Query: 311 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 370
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 176 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 235
Query: 371 TYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
R+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++
Sbjct: 236 ISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED 292
>gi|119489756|ref|ZP_01622514.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
gi|119454330|gb|EAW35480.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Length = 391
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 104/234 (44%), Positives = 146/234 (62%), Gaps = 1/234 (0%)
Query: 195 GSTSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLS 253
G R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +RE L
Sbjct: 63 GVAKSRRRTQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARRIADLLELERIREKLV 122
Query: 254 ERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQ 313
E P +WA+A + E RRRL G KDKM+ SN+RLV+SIAK Y G++ Q
Sbjct: 123 EHNHCEPEDREWASAVDMALPEFRRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQ 182
Query: 314 DLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYR 373
DL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R
Sbjct: 183 DLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISR 242
Query: 374 VKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++
Sbjct: 243 IKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED 296
>gi|449523964|ref|XP_004168993.1| PREDICTED: RNA polymerase sigma factor sigB-like, partial [Cucumis
sativus]
Length = 296
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 132/238 (55%), Positives = 174/238 (73%), Gaps = 8/238 (3%)
Query: 3 TVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAAAS 62
T LDV++L+LP + ++++V+ R +Y GAV +SLA+ LTS+EA IAAA+
Sbjct: 67 TTLDVDRLKLPPFDTNTDSVSVERLRSYLGAVE--------SSLASTLLTSEEASIAAAA 118
Query: 63 AEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASIIGD 122
AEAV LA+AAVKVA+DAAL+ N+ NS++ +K S D WAQ E ERA IIG+
Sbjct: 119 AEAVTLAKAAVKVARDAALLANNINSSRAGTKSQSSPKPDALHFKWAQFMESERADIIGE 178
Query: 123 SVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAA 182
V V P E + + +S D+EPT EEL+LL++++S+SI V+S+RQTERKARRTRAA
Sbjct: 179 PVGVNKRPMEGDALEPSTTESDDMEPTSEELELLQDELSESITVKSKRQTERKARRTRAA 238
Query: 183 EKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQ 240
EK +V+S KSGS+SR+KR SVQEVDYSDPLRYLRATT++SRLLTA EE++LS GIQ
Sbjct: 239 EKTVTSVLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSRLLTATEELELSEGIQ 296
>gi|300867798|ref|ZP_07112441.1| RNA polymerase sigma factor RpoD [Oscillatoria sp. PCC 6506]
gi|300334215|emb|CBN57613.1| RNA polymerase sigma factor RpoD [Oscillatoria sp. PCC 6506]
Length = 391
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 106/238 (44%), Positives = 148/238 (62%), Gaps = 3/238 (1%)
Query: 193 KSGS--TSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR 249
KSGS R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +R
Sbjct: 59 KSGSKVAKARRRAQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIR 118
Query: 250 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 309
E L E P +WA A G+ R RL+ G KDKM+ SN+RLV+SIAK Y G
Sbjct: 119 EQLCEELERDPKDNEWANAVGMPLPAFRHRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRG 178
Query: 310 MNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVE 369
++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 179 LSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYE 238
Query: 370 ATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
R+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++
Sbjct: 239 TISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED 296
>gi|17232755|ref|NP_489303.1| RNA polymerase sigma factor RpoD [Nostoc sp. PCC 7120]
gi|75907632|ref|YP_321928.1| RNA polymerase sigma factor RpoD [Anabaena variabilis ATCC 29413]
gi|133465|sp|P26683.1|RPOD_NOSS1 RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A
gi|142108|gb|AAA22043.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
gi|17134402|dbj|BAB76962.1| transcription initiation factor sigma [Nostoc sp. PCC 7120]
gi|75701357|gb|ABA21033.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 390
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 150/237 (63%), Gaps = 2/237 (0%)
Query: 193 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
KSG + SRR+ S ++ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 59 KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 118
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
LSE+ P ++WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 119 RLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGL 178
Query: 311 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 370
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 179 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 238
Query: 371 TYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
R+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++
Sbjct: 239 ISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED 295
>gi|427729924|ref|YP_007076161.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427365843|gb|AFY48564.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 390
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 150/237 (63%), Gaps = 2/237 (0%)
Query: 193 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
KSG + SRR+ S ++ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 59 KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRE 118
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
LSE+ P ++WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 119 RLSEQLERDPHDSEWAEAVQLPLPAFRYRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGL 178
Query: 311 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 370
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 179 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 238
Query: 371 TYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
R+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++
Sbjct: 239 ISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED 295
>gi|186686393|ref|YP_001869589.1| RNA polymerase sigma factor RpoD [Nostoc punctiforme PCC 73102]
gi|8118663|gb|AAF73062.1|AF265349_1 primary vegetative sigma factor [Nostoc punctiforme]
gi|186468845|gb|ACC84646.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 389
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 150/237 (63%), Gaps = 2/237 (0%)
Query: 193 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
KSG + SRR+ S ++ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 58 KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 117
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
LSE+ P ++WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 118 RLSEQLDRDPRDSEWAEAVQLPLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGL 177
Query: 311 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 370
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 178 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 237
Query: 371 TYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
R+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++
Sbjct: 238 ISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED 294
>gi|414078407|ref|YP_006997725.1| RpoD family RNA polymerase sigma factor SigA [Anabaena sp. 90]
gi|413971823|gb|AFW95912.1| RpoD family RNA polymerase sigma factor SigA [Anabaena sp. 90]
Length = 391
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 106/238 (44%), Positives = 150/238 (63%), Gaps = 3/238 (1%)
Query: 193 KSG--STSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR 249
KSG + SRR+ P ++ Y+ D +R RLL A+EE++L+ I +LL+LE R
Sbjct: 59 KSGKAAKSRRRTPIAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIAELLELERAR 118
Query: 250 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 309
E L ER P ++WAA + R RL+ G KDKM+ SN+RLV+SIAK Y G
Sbjct: 119 ERLCERLERDPRDSEWAAEVSLPLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRG 178
Query: 310 MNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVE 369
++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 179 LSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYE 238
Query: 370 ATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
R+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++
Sbjct: 239 TISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED 296
>gi|427705875|ref|YP_007048252.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427358380|gb|AFY41102.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 391
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 150/237 (63%), Gaps = 2/237 (0%)
Query: 193 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
KSG + SRR+ S ++ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 60 KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 119
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
LSE+ P ++WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 120 RLSEQLDRDPRDSEWAEAVQLPLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGL 179
Query: 311 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 370
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 180 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 239
Query: 371 TYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
R+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++
Sbjct: 240 ISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED 296
>gi|443315526|ref|ZP_21045012.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442784874|gb|ELR94728.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 372
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 102/233 (43%), Positives = 147/233 (63%)
Query: 195 GSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSE 254
G TSRR+ + ++ D +R RLL A EE++L+ I DLL+LE + + L+E
Sbjct: 45 GKTSRRRTQTKKKHYTEDSIRLYLQEIGRIRLLRAEEEIELARKIADLLELERVYDQLAE 104
Query: 255 RCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQD 314
P A+WA A + + +RRL+ G KDKM+ SN+RLV+SIAK Y G++ QD
Sbjct: 105 TLQRDPQDAEWAEAVDMPLPKFQRRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQD 164
Query: 315 LVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRV 374
L+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+
Sbjct: 165 LIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRI 224
Query: 375 KEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
K+ K L E GR P EE+A +++++L + S + P SL+ IG ++
Sbjct: 225 KKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED 277
>gi|298491609|ref|YP_003721786.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298233527|gb|ADI64663.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 390
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 105/237 (44%), Positives = 149/237 (62%), Gaps = 2/237 (0%)
Query: 193 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
KSG + SRR+ S ++ D +R RLL A+EE++L+ I DLL+LE +R+
Sbjct: 59 KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRD 118
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
L E+ P F +WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 119 RLYEQLEREPQFKEWAEAVQLPLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGL 178
Query: 311 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 370
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 179 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 238
Query: 371 TYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
R+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++
Sbjct: 239 ISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED 295
>gi|428773077|ref|YP_007164865.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428687356|gb|AFZ47216.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 391
Score = 201 bits (510), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 107/243 (44%), Positives = 149/243 (61%), Gaps = 10/243 (4%)
Query: 186 AANVMSVKSGSTSRR----KRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQD 241
A+N + K +T RR K+P + D +R RLL A EE++L+ I D
Sbjct: 55 ASNKKARKLPATRRRTQTKKKPFTE-----DSIRVYLQEIGRIRLLRAEEEIELARQIAD 109
Query: 242 LLKLEGLREVLSERCGGSPTFAQWAAAAGV-DQRELRRRLNYGILCKDKMITSNIRLVIS 300
LL LE +R E G PT +WA A + + R+ RRL+ G KDKM+ SN+RLV+S
Sbjct: 110 LLDLEYIRATQIEHLGRIPTDEEWAIACDIPNMRQFNRRLHIGRRAKDKMVQSNLRLVVS 169
Query: 301 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 360
IAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRT
Sbjct: 170 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 229
Query: 361 IRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQ 420
IRLP H+ E R+K+ K L + GR P EE+AE +++++L + S + P SL+
Sbjct: 230 IRLPVHLYETISRIKKTTKMLSQKMGRKPTEEEIAEDMEMTIEKLRFIAKSAQLPISLET 289
Query: 421 KIG 423
IG
Sbjct: 290 PIG 292
>gi|119512308|ref|ZP_01631394.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
gi|119463021|gb|EAW43972.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
Length = 391
Score = 201 bits (510), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 104/235 (44%), Positives = 147/235 (62%), Gaps = 2/235 (0%)
Query: 191 SVKSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGL 248
KSG + SRR+ S ++ D +R RLL A+EE++L+ I DLL+LE +
Sbjct: 58 DTKSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERV 117
Query: 249 REVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGA 308
R+ L E+ P + +WA A + R RL+ G KDKM+ SN+RLV+SIAK Y
Sbjct: 118 RDRLQEQLEREPEYREWAEAVQIPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNR 177
Query: 309 GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV 368
G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+
Sbjct: 178 GLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 237
Query: 369 EATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
E R+K+ K L E GR P EE+A +++++L + S + P SL+ IG
Sbjct: 238 ETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIG 292
>gi|411117176|ref|ZP_11389663.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410713279|gb|EKQ70780.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 382
Score = 201 bits (510), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 101/229 (44%), Positives = 146/229 (63%), Gaps = 1/229 (0%)
Query: 200 RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGG 258
R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +RE L ++
Sbjct: 59 RRRTQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRESLQQQLDR 118
Query: 259 SPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQE 318
+P A+WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G++ QDL+QE
Sbjct: 119 TPQDAEWANAVNMTLPAFRHRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQE 178
Query: 319 GCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEAR 378
G GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+
Sbjct: 179 GSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTT 238
Query: 379 KQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
K L E GR P EE+A +++++L + S + P SL+ IG ++
Sbjct: 239 KLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED 287
>gi|354567212|ref|ZP_08986382.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353543513|gb|EHC12971.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 393
Score = 201 bits (510), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 102/233 (43%), Positives = 150/233 (64%), Gaps = 2/233 (0%)
Query: 193 KSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
KSG ++ R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +R+
Sbjct: 62 KSGKAAKSRRRSQNKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRD 121
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
L ++ P +++WA A + + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 122 RLQQQLEREPQYSEWAEAVQLPLPQFRHRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGL 181
Query: 311 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 370
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 182 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 241
Query: 371 TYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
R+K+ K L E GR P EE+A +++++L + S + P SL+ IG
Sbjct: 242 ISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIG 294
>gi|282896628|ref|ZP_06304643.1| sigA (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281198498|gb|EFA73384.1| sigA (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 390
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 104/237 (43%), Positives = 149/237 (62%), Gaps = 2/237 (0%)
Query: 193 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
KSG + SRR+ + ++ D +R RLL A+EE++L+ I DLL+LE +R+
Sbjct: 59 KSGKAAKSRRRTQTKKKPFTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRD 118
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
L E+ P F +WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 119 DLYEQLEREPEFREWAEAVKLPLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGL 178
Query: 311 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 370
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 179 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 238
Query: 371 TYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
R+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++
Sbjct: 239 ISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED 295
>gi|282899714|ref|ZP_06307678.1| sigA (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281195593|gb|EFA70526.1| sigA (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 390
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 104/237 (43%), Positives = 149/237 (62%), Gaps = 2/237 (0%)
Query: 193 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
KSG + SRR+ + ++ D +R RLL A+EE++L+ I DLL+LE +R+
Sbjct: 59 KSGKAAKSRRRTQTKKKPFTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRD 118
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
L E+ P F +WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 119 DLYEQLEREPEFREWAEAVKLPLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGL 178
Query: 311 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 370
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 179 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 238
Query: 371 TYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
R+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++
Sbjct: 239 ISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED 295
>gi|332707223|ref|ZP_08427276.1| RNA polymerase sigma factor RpoD-like protein [Moorea producens 3L]
gi|332353957|gb|EGJ33444.1| RNA polymerase sigma factor RpoD-like protein [Moorea producens 3L]
gi|332651116|gb|AEE81159.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 373
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 101/233 (43%), Positives = 148/233 (63%)
Query: 195 GSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSE 254
G ++RR+ S ++ D +R RLL A+EE++L+ I DLL+LE +RE LSE
Sbjct: 46 GRSNRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLSE 105
Query: 255 RCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQD 314
+ P +WA ++ R RL+ G K+KM+ SN+RLV+SIAK Y G++ QD
Sbjct: 106 QLEREPGDREWATEVDMELPAFRYRLHVGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQD 165
Query: 315 LVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRV 374
L+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+
Sbjct: 166 LIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRI 225
Query: 375 KEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
K+ K L E GR P EE+A+ +++++L + S + P SL+ IG ++
Sbjct: 226 KKTTKLLSQEMGRKPTEEEIADRMEMTIEKLRFIAKSAQLPISLETPIGKEED 278
>gi|443309377|ref|ZP_21039100.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442780574|gb|ELR90744.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 386
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 102/234 (43%), Positives = 148/234 (63%), Gaps = 2/234 (0%)
Query: 192 VKSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR 249
VK+G + R+R ++ Y+ D +R RLL A+EE++L+ I +LL++E +R
Sbjct: 54 VKAGKVVKSRRRAQTKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIAELLQMERVR 113
Query: 250 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 309
E L +R P ++WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G
Sbjct: 114 EQLCDRLDRDPHDSEWAEAVELPINSFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRG 173
Query: 310 MNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVE 369
++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 174 LSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYE 233
Query: 370 ATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
R+K+ K L E GR P EE+A +++++L + S + P SL+ IG
Sbjct: 234 TISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIG 287
>gi|113478384|ref|YP_724445.1| RNA polymerase sigma factor RpoD [Trichodesmium erythraeum IMS101]
gi|110169432|gb|ABG53972.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 386
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 103/245 (42%), Positives = 155/245 (63%), Gaps = 2/245 (0%)
Query: 185 AAANVMSVKSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDL 242
A ++ +KSG ++ R R + ++ Y+ D +R RLL A+EE++L+ I DL
Sbjct: 47 AQSDEDDLKSGKVAKSRTRTAGKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADL 106
Query: 243 LKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIA 302
L+LE +RE L P ++WA A ++ + +RRL G K+KM+ SN+RLV+SIA
Sbjct: 107 LELERIREELIYHLDREPQVSEWANAVDMELPKFKRRLILGRRAKEKMVQSNLRLVVSIA 166
Query: 303 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 362
K Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIR
Sbjct: 167 KKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIR 226
Query: 363 LPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKI 422
LP H+ E R+K+ K L E GR P EE+A + +++++L + S + P SL+ I
Sbjct: 227 LPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATSMEMTIEKLRFIAKSAQLPISLETPI 286
Query: 423 GINQN 427
G ++
Sbjct: 287 GKEED 291
>gi|220906934|ref|YP_002482245.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7425]
gi|219863545|gb|ACL43884.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 378
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 99/233 (42%), Positives = 146/233 (62%)
Query: 195 GSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSE 254
G ++RR+ + ++ D +R RLL A+EE++L+ I DLL+LE +RE L +
Sbjct: 51 GRSTRRRSQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREQLYD 110
Query: 255 RCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQD 314
+ P +WA + + R RL+ G KDKM+ SN+RLV+SIAK Y G++ QD
Sbjct: 111 KLDREPQDQEWAGEVDMPLQSFRHRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQD 170
Query: 315 LVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRV 374
L+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+
Sbjct: 171 LIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRI 230
Query: 375 KEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
K+ K L E GR P EE+A +++++L + S + P SL+ IG ++
Sbjct: 231 KKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED 283
>gi|428312164|ref|YP_007123141.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428253776|gb|AFZ19735.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 373
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 100/231 (43%), Positives = 147/231 (63%), Gaps = 1/231 (0%)
Query: 198 SRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERC 256
S R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +R+ LS++
Sbjct: 48 STRRRAQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRDRLSDQL 107
Query: 257 GGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLV 316
P ++WA + + R RL G KDKM+ SN+RLV+SIAK Y G++ QDL+
Sbjct: 108 EREPQDSEWATEVNMPLQAFRHRLYVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLI 167
Query: 317 QEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKE 376
QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+
Sbjct: 168 QEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKK 227
Query: 377 ARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
K L E GR P EE+A+ +++++L + S + P SL+ IG ++
Sbjct: 228 TTKILSQEMGRKPTEEEIADRMEMTIEKLRFIAKSAQLPISLETPIGKEED 278
>gi|428778228|ref|YP_007170015.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothece sp. PCC
7418]
gi|428692507|gb|AFZ45801.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothece sp. PCC
7418]
Length = 394
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 98/216 (45%), Positives = 137/216 (63%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL A+EE++L+ I DLL+LE R L G PT +WA +
Sbjct: 83 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERKRTELEATIGCEPTDEEWAEEVDM 142
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
++ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 143 PLQKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 202
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 203 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTE 262
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
EE+AE +++++L + S + P SL+ IG ++
Sbjct: 263 EEIAERMEMTIEKLRFIAKSAQLPISLETPIGKEED 298
>gi|334118497|ref|ZP_08492586.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333459504|gb|EGK88117.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 388
Score = 198 bits (503), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 149/237 (62%), Gaps = 2/237 (0%)
Query: 193 KSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
KSG ++ R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 57 KSGKGAKARRRAQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 116
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
L E P ++WA A + R RL+ G K+KM+ SN+RLV+SIAK Y G+
Sbjct: 117 QLLEEYNREPKDSEWANAVDMALPAFRHRLHVGRRAKEKMVQSNLRLVVSIAKKYMNRGL 176
Query: 311 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 370
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 177 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 236
Query: 371 TYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
R+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++
Sbjct: 237 ISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED 293
>gi|434393235|ref|YP_007128182.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428265076|gb|AFZ31022.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 390
Score = 197 bits (502), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 102/237 (43%), Positives = 150/237 (63%), Gaps = 2/237 (0%)
Query: 193 KSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
KSG ++ R+R ++ Y+ D +R RLL A+EE++L+ I +LL++E +RE
Sbjct: 59 KSGKAAKSRRRAQTKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIAELLEMERVRE 118
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
L E+ P ++WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 119 RLLEQLDREPQDSEWAEAVQLSLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGL 178
Query: 311 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 370
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 179 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 238
Query: 371 TYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
R+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++
Sbjct: 239 ISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED 295
>gi|428203576|ref|YP_007082165.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427981008|gb|AFY78608.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 374
Score = 197 bits (502), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 105/245 (42%), Positives = 148/245 (60%)
Query: 183 EKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDL 242
E A A K +SRR+ S ++ D +R RLL A EE++L+ I DL
Sbjct: 35 EDAIAEPEDRKVRGSSRRRETSKKKPYTEDSIRVYLQEIGRIRLLRAEEEIELARKIADL 94
Query: 243 LKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIA 302
L+LE + E L +R G P +WA A ++ +RRL G KDKM+ SN+RLV+SIA
Sbjct: 95 LELERIYEQLRKRLGRFPNNREWAEAVEMELPAFQRRLYLGRRAKDKMVQSNLRLVVSIA 154
Query: 303 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 362
K Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIR
Sbjct: 155 KKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIR 214
Query: 363 LPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKI 422
LP H+ E R+K+ K L E R P EE+A +++++L + S + P SL+ I
Sbjct: 215 LPVHLYETISRIKKTTKILSQEMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPI 274
Query: 423 GINQN 427
G ++
Sbjct: 275 GKEED 279
>gi|218438948|ref|YP_002377277.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218171676|gb|ACK70409.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 376
Score = 197 bits (502), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 102/232 (43%), Positives = 146/232 (62%), Gaps = 1/232 (0%)
Query: 197 TSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 255
T+ R+R + ++ Y+ D +R RLL A EE++L+ I DLL+LE LRE L
Sbjct: 50 TATRRRDAGKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERLREKLRRS 109
Query: 256 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 315
G P+ +WA G++ +RRL G KDKM+ SN+RLV+SIAK Y G++ QDL
Sbjct: 110 LGRYPSDKEWAEQVGMELPAFQRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 169
Query: 316 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVK 375
+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K
Sbjct: 170 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIK 229
Query: 376 EARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
+ K L E R P EE+A +++++L + S + P SL+ IG ++
Sbjct: 230 KTTKILSQEMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED 281
>gi|428320499|ref|YP_007118381.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428244179|gb|AFZ09965.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 388
Score = 197 bits (502), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 149/237 (62%), Gaps = 2/237 (0%)
Query: 193 KSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
KSG ++ R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 57 KSGKGAKARRRAQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 116
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
L E P ++WA A + R RL+ G K+KM+ SN+RLV+SIAK Y G+
Sbjct: 117 QLLEEYNREPKDSEWANAVEMALPAFRHRLHVGRRAKEKMVQSNLRLVVSIAKKYMNRGL 176
Query: 311 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 370
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 177 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 236
Query: 371 TYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
R+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++
Sbjct: 237 ISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED 293
>gi|428225120|ref|YP_007109217.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427985021|gb|AFY66165.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 381
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 101/231 (43%), Positives = 145/231 (62%)
Query: 197 TSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERC 256
+ RRK + ++ D +R RLL A+EE++L+ I DLL+LE +R L+E+
Sbjct: 56 SGRRKAQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRADLAEQL 115
Query: 257 GGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLV 316
PT A+WA + R RL+ G KDKM+ SN+RLV+SIAK Y G++ QDL+
Sbjct: 116 EREPTDAEWAQKVDMALPAFRHRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLI 175
Query: 317 QEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKE 376
QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+
Sbjct: 176 QEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKK 235
Query: 377 ARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
K L E GR P EE+A +++++L + S + P SL+ IG ++
Sbjct: 236 TTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED 286
>gi|434388482|ref|YP_007099093.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428019472|gb|AFY95566.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 380
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 101/230 (43%), Positives = 143/230 (62%)
Query: 198 SRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG 257
SRR+ + ++ D +R RLL A+EE++L+ I DLL+LE +RE L
Sbjct: 56 SRRRVQTKKKQFTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERMREKLLNDLD 115
Query: 258 GSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
P +WAA A + + R RL G KDKM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 116 REPHDREWAAVASMPLNQFRHRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 175
Query: 318 EGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEA 377
EG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+
Sbjct: 176 EGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKT 235
Query: 378 RKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
K L E GR P EE+A +++++L + S + P SL+ IG ++
Sbjct: 236 TKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED 285
>gi|307152414|ref|YP_003887798.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306982642|gb|ADN14523.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 377
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 101/232 (43%), Positives = 143/232 (61%)
Query: 196 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 255
S +RR+ ++ D +R RLL A EE++L+ I DLL+LE LRE L
Sbjct: 51 SATRRRDAGKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERLREKLRRN 110
Query: 256 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 315
G P+ +WA G++ +RRL G KDKM+ SN+RLV+SIAK Y G++ QDL
Sbjct: 111 LGRYPSDKEWAQQVGMELPAFQRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 170
Query: 316 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVK 375
+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K
Sbjct: 171 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIK 230
Query: 376 EARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
+ K L E R P EE+A +++++L + S + P SL+ IG ++
Sbjct: 231 KTTKILSQEMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED 282
>gi|427734591|ref|YP_007054135.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427369632|gb|AFY53588.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 389
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 101/235 (42%), Positives = 151/235 (64%), Gaps = 2/235 (0%)
Query: 191 SVKSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGL 248
+VK+G ++ R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +
Sbjct: 56 AVKAGKAAKGRRRTQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERV 115
Query: 249 REVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGA 308
+ L ++ P ++WA A + ++ R RL+ G KDKM+ SN+RLV+SIAK Y
Sbjct: 116 GDRLVQQLERQPQESEWAEAVQLPLQKFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNR 175
Query: 309 GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV 368
G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+
Sbjct: 176 GLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 235
Query: 369 EATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
E R+K+ K L E GR P EE+A +++++L + S + P SL+ IG
Sbjct: 236 ETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIG 290
>gi|124022438|ref|YP_001016745.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9303]
gi|123962724|gb|ABM77480.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9303]
Length = 444
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 97/216 (44%), Positives = 136/216 (62%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L E + G P +WAA +
Sbjct: 134 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAEQFNSDHGHYPNNKEWAALVEM 193
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 194 PNIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 253
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 254 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 313
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
EE+AE+ +++++L + S + P SL+ IG ++
Sbjct: 314 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED 349
>gi|254430902|ref|ZP_05044605.1| DNA-directed RNA polymerase sigma subunit [Cyanobium sp. PCC 7001]
gi|197625355|gb|EDY37914.1| DNA-directed RNA polymerase sigma subunit [Cyanobium sp. PCC 7001]
Length = 503
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 104/245 (42%), Positives = 145/245 (59%), Gaps = 9/245 (3%)
Query: 183 EKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDL 242
EKAA + S+K G V D +R RLL +EE++L+ I DL
Sbjct: 173 EKAAKALASIKVGPKG---------VYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADL 223
Query: 243 LKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIA 302
L+LE L G P +WAA + + RRRL G K+KM+ SN+RLV+SIA
Sbjct: 224 LQLEELAAQFEADHGHYPDNKEWAALVDMPLIKFRRRLMLGRRAKEKMVQSNLRLVVSIA 283
Query: 303 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 362
K Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIR
Sbjct: 284 KKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIR 343
Query: 363 LPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKI 422
LP H+ E R+K+ K L E GR P EE+AE+ +++++L + S + P SL+ I
Sbjct: 344 LPVHLYETISRIKKTTKTLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPI 403
Query: 423 GINQN 427
G ++
Sbjct: 404 GKEED 408
>gi|443320294|ref|ZP_21049405.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442790001|gb|ELR99623.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 376
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 102/235 (43%), Positives = 145/235 (61%)
Query: 193 KSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL 252
K ST RR+ + ++ D +R RLL A EE++L+ I DLL+LE RE L
Sbjct: 47 KKLSTIRRQETNKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELEQKREKL 106
Query: 253 SERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
+ P +WAA+ ++ RRRL G K+KM+ SN+RLV+SIAK Y G++
Sbjct: 107 WQELKRIPNDREWAASVEMELPAFRRRLYLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSF 166
Query: 313 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY 372
QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E
Sbjct: 167 QDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETIS 226
Query: 373 RVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
R+K+ K L E GR P EE+A +++++L + S + P SL+ IG ++
Sbjct: 227 RIKKTTKILSQEMGRKPTEEEIATHMEMTIEKLRFIAKSAQLPISLETPIGKEED 281
>gi|158334991|ref|YP_001516163.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|359457419|ref|ZP_09245982.1| RNA polymerase sigma-70 factor [Acaryochloris sp. CCMEE 5410]
gi|158305232|gb|ABW26849.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 371
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 99/231 (42%), Positives = 143/231 (61%)
Query: 197 TSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERC 256
T+RR+ S ++ D +R RLL A+EE++L+ I DLL+LE + + L +R
Sbjct: 46 TARRRGQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIYDDLFDRL 105
Query: 257 GGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLV 316
P +WA + R RL+ G KDKM+ SN+RLV+SIAK Y G++ QDL+
Sbjct: 106 EREPQLQEWALEVDMPLNRFRHRLHAGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLI 165
Query: 317 QEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKE 376
QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+
Sbjct: 166 QEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKK 225
Query: 377 ARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
K L E GR P EE+A +++++L + S + P SL+ IG ++
Sbjct: 226 TTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED 276
>gi|33863540|ref|NP_895100.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9313]
gi|33640989|emb|CAE21447.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9313]
Length = 461
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 136/216 (62%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L E + G P +WA+ +
Sbjct: 151 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAEQFNSDHGHYPNNKEWASLVEM 210
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 211 PNIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 270
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 271 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 330
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
EE+AE+ +++++L + S + P SL+ IG ++
Sbjct: 331 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED 366
>gi|148241988|ref|YP_001227145.1| RNA polymerase sigma factor RpoD [Synechococcus sp. RCC307]
gi|147850298|emb|CAK27792.1| RNA polymerase sigma factor RpoD, sigma-70 family [Synechococcus
sp. RCC307]
Length = 401
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 106/257 (41%), Positives = 148/257 (57%), Gaps = 9/257 (3%)
Query: 171 QTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTAN 230
Q E T A + AA + S+K G V D +R RLL +
Sbjct: 59 QAEVAVTTTVAKDGKAAKLPSIKIGPKG---------VYTEDSIRVYLQEIGRIRLLRPD 109
Query: 231 EEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKM 290
EE++L+ I DLL LE L + E G P +WA + + RRRL G K+KM
Sbjct: 110 EEIELARKIADLLHLEELADQYEEDHGKYPDNREWAVLVDMPPIKFRRRLMLGRRAKEKM 169
Query: 291 ITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAV 350
+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+
Sbjct: 170 VQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAI 229
Query: 351 RKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 410
++++DQSRTIRLP H+ E R+K+ K L E GR P EE+AE+ +++++L +
Sbjct: 230 TRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAK 289
Query: 411 SPKAPRSLDQKIGINQN 427
S + P SL+ IG ++
Sbjct: 290 SAQLPISLETPIGKEED 306
>gi|427712362|ref|YP_007060986.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
gi|427376491|gb|AFY60443.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
Length = 382
Score = 194 bits (493), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 101/241 (41%), Positives = 149/241 (61%), Gaps = 6/241 (2%)
Query: 193 KSGSTSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREV 251
K+G R+R + ++ Y+ D +R RLL A+EE++L+ I DLL+LE +R+
Sbjct: 47 KAGKAKGRRRATAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRDR 106
Query: 252 LSERCGGSPTFAQ-----WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQ 306
+SE+ P + WA+ + R RL G K+KM+ SN+RLV+SIAK Y
Sbjct: 107 ISEQLDCDPDDLERHPEPWASEVKMTLPAFRHRLFVGRRAKEKMVQSNLRLVVSIAKKYM 166
Query: 307 GAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFH 366
G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H
Sbjct: 167 NRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVH 226
Query: 367 MVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQ 426
+ E R+K+ K L E GR P EE+AE +++++L + S + P SL+ IG +
Sbjct: 227 LYETISRIKKTTKLLSQEMGRKPTEEEIAERMEMTIEKLRFIAKSAQLPISLETPIGKEE 286
Query: 427 N 427
+
Sbjct: 287 D 287
>gi|318041167|ref|ZP_07973123.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CB0101]
Length = 464
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 135/216 (62%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL+LE L G P +WAA +
Sbjct: 154 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELAAQFETDHGHYPDTKEWAALVDM 213
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 214 PLIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 273
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 274 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKTLSQEFGRKPTE 333
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
EE+AE+ +++++L + S + P SL+ IG ++
Sbjct: 334 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED 369
>gi|254416030|ref|ZP_05029786.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196177205|gb|EDX72213.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 380
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 98/231 (42%), Positives = 146/231 (63%), Gaps = 1/231 (0%)
Query: 198 SRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERC 256
S R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +R+ L ++
Sbjct: 55 STRRRTQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRDRLYDQL 114
Query: 257 GGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLV 316
P +WA ++ R+RL G K+KM+ SN+RLV+SIAK Y G++ QDL+
Sbjct: 115 EREPKEGEWAKEVEMELPAFRQRLFLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLI 174
Query: 317 QEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKE 376
QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+
Sbjct: 175 QEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKK 234
Query: 377 ARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
K L E GR P EE+A+ +++++L + S + P SL+ IG ++
Sbjct: 235 TTKILSQELGRKPTEEEIADRMEMTIEKLRFIAKSAQLPISLETPIGKEED 285
>gi|428307311|ref|YP_007144136.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428248846|gb|AFZ14626.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 383
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 99/231 (42%), Positives = 144/231 (62%), Gaps = 1/231 (0%)
Query: 198 SRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERC 256
S R+R ++ Y+ D +R RLL A+EE++L+ I +LL+LE + E L +
Sbjct: 58 STRRRAQTKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIAELLQLERVYEQLKAQL 117
Query: 257 GGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLV 316
P ++WA A + + R RL G KDKM+ SN+RLV+SIAK Y G++ QDL+
Sbjct: 118 DREPKDSEWALAVEMPLPQFRHRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLI 177
Query: 317 QEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKE 376
QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+
Sbjct: 178 QEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKK 237
Query: 377 ARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
K L E GR P EE+A +++++L + S + P SL+ IG ++
Sbjct: 238 TTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED 288
>gi|194696078|gb|ACF82123.1| unknown [Zea mays]
gi|323388703|gb|ADX60156.1| SIGMA70-like transcription factor [Zea mays]
gi|413932355|gb|AFW66906.1| sigma factor SIG6 [Zea mays]
Length = 541
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 104/285 (36%), Positives = 164/285 (57%), Gaps = 13/285 (4%)
Query: 138 QPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGST 197
QP +S D P H + +RS R ER++++ +A N ++ SG
Sbjct: 165 QPHRRSVD--PNHS---------YDQVFIRSTRLLERRSKKRNGGHRALDNGVAC-SGVN 212
Query: 198 SRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG 257
S+RK + +D +P R ++ LTA EE Q+ + IQ+L+KLEG + L +CG
Sbjct: 213 SKRKDKFGRVLDPDEPFRLFLRDRETTEFLTAKEEKQMFSQIQNLMKLEGAQRNLQAQCG 272
Query: 258 GSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
PT +WA A G+ REL+ + G C++KM SN RLVI +A+ Y+G G+++QDLVQ
Sbjct: 273 REPTVEEWAQAVGMSCRELQSCVRTGRRCREKMARSNFRLVIHVARKYEGCGLDIQDLVQ 332
Query: 318 EGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEA 377
+GC GL++ EKF+ SKG +F TYA+WWI+Q+++KS+ SR IRLP + +V +A
Sbjct: 333 DGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQSIKKSIFKNSRLIRLPESVYALLRKVGKA 392
Query: 378 RKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKI 422
R + +G P NE VA G+++++L + + RS+ ++
Sbjct: 393 RMECIM-DGEQPTNEVVARRAGITIEKLAKLRAKTRKVRSMQDRV 436
>gi|413932354|gb|AFW66905.1| hypothetical protein ZEAMMB73_346249 [Zea mays]
Length = 542
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 104/285 (36%), Positives = 164/285 (57%), Gaps = 13/285 (4%)
Query: 138 QPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGST 197
QP +S D P H + +RS R ER++++ +A N ++ SG
Sbjct: 166 QPHRRSVD--PNHS---------YDQVFIRSTRLLERRSKKRNGGHRALDNGVAC-SGVN 213
Query: 198 SRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG 257
S+RK + +D +P R ++ LTA EE Q+ + IQ+L+KLEG + L +CG
Sbjct: 214 SKRKDKFGRVLDPDEPFRLFLRDRETTEFLTAKEEKQMFSQIQNLMKLEGAQRNLQAQCG 273
Query: 258 GSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
PT +WA A G+ REL+ + G C++KM SN RLVI +A+ Y+G G+++QDLVQ
Sbjct: 274 REPTVEEWAQAVGMSCRELQSCVRTGRRCREKMARSNFRLVIHVARKYEGCGLDIQDLVQ 333
Query: 318 EGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEA 377
+GC GL++ EKF+ SKG +F TYA+WWI+Q+++KS+ SR IRLP + +V +A
Sbjct: 334 DGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQSIKKSIFKNSRLIRLPESVYALLRKVGKA 393
Query: 378 RKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKI 422
R + +G P NE VA G+++++L + + RS+ ++
Sbjct: 394 RMECIM-DGEQPTNEVVARRAGITIEKLAKLRAKTRKVRSMQDRV 437
>gi|194477302|ref|YP_002049481.1| RNA polymerase sigma factor [Paulinella chromatophora]
gi|171192309|gb|ACB43271.1| RNA polymerase sigma factor [Paulinella chromatophora]
Length = 460
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 97/216 (44%), Positives = 134/216 (62%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L R G P +WAA +
Sbjct: 150 DSIRVYLQEIGRIRLLRPDEEIELARKISDLLYLEELAGQFEGRKGYYPDNKEWAALVEM 209
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+ RRRL G K KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 210 SLIKFRRRLMLGRRAKAKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 269
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 270 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 329
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
EE+AE+ +++++L + S + P SL+ IG ++
Sbjct: 330 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED 365
>gi|218247827|ref|YP_002373198.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 8801]
gi|257060853|ref|YP_003138741.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 8802]
gi|218168305|gb|ACK67042.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
gi|256591019|gb|ACV01906.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 318
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 96/217 (44%), Positives = 142/217 (65%), Gaps = 2/217 (0%)
Query: 212 DPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
DP+R YLR LLT EE+ + +Q + LE L+E L+E G PT AQWA AA
Sbjct: 9 DPVRAYLREIGRVP-LLTHEEEILYAKRVQRFVALETLKESLTEELGQEPTIAQWAKAAK 67
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
+ Q+ELR + G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKF
Sbjct: 68 MTQKELRSAIEAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KG++FSTYA+WWI+QA+ ++++++SRTIRLP H+ E ++K+A++QL E GR
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQEKGRAAT 187
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
E+AE L+ +++ L + P SLD ++G NQ+
Sbjct: 188 IAELAEELELTPRQVREYLERARQPLSLDLRVGDNQD 224
>gi|124025264|ref|YP_001014380.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
NATL1A]
gi|123960332|gb|ABM75115.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. NATL1A]
Length = 420
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 95/212 (44%), Positives = 132/212 (62%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL+LE G P+ +WA A +
Sbjct: 108 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEEEAAQFESENGHFPSVKEWAVLADM 167
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 168 PLTRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 227
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 228 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 287
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
EE+AE+ +++++L + S + P SL+ IG
Sbjct: 288 EEIAESMEMTIEKLRFIAKSAQLPISLETPIG 319
>gi|427723688|ref|YP_007070965.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427355408|gb|AFY38131.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 318
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 141/217 (64%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SDP+R LLT EE+ S +Q ++ LE L+ L+E PT +WA AA
Sbjct: 8 SDPVRSYLKEIGRVPLLTHEEEVVYSRRVQQMVALEKLKAELTEHQEDEPTLKEWAKAAK 67
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
+ Q+EL++R++ G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKF
Sbjct: 68 ITQKELKKRMSIGAQAKQKMVEANLRLVVSVAKKYIKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KG++FSTYA+WWI+QA+ ++++++SRTIRLP H+ E ++K+A++QL +NGR
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQKNGRAAT 187
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
E+AE L+ K++ L + P SLD ++G N +
Sbjct: 188 IPELAEELDLTTKQVRDYLEKSRQPLSLDLRVGDNND 224
>gi|317969651|ref|ZP_07971041.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CB0205]
Length = 470
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 102/246 (41%), Positives = 143/246 (58%), Gaps = 9/246 (3%)
Query: 182 AEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQD 241
A K A + S+K G V D +R RLL +EE++L+ I D
Sbjct: 139 AAKTAKALASIKIGPKG---------VYTEDSIRVYLQEIGRIRLLRPDEEIELARKIAD 189
Query: 242 LLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISI 301
LL+LE L G P +WA + + RRRL G K+KM+ SN+RLV+SI
Sbjct: 190 LLQLEELANQFEADNGHYPDTKEWATLVEMPLVKFRRRLMLGRRAKEKMVQSNLRLVVSI 249
Query: 302 AKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI 361
AK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTI
Sbjct: 250 AKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTI 309
Query: 362 RLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQK 421
RLP H+ E R+K+ K L E GR P EE+AE+ +++++L + S + P SL+
Sbjct: 310 RLPVHLYETISRIKKTTKTLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETP 369
Query: 422 IGINQN 427
IG ++
Sbjct: 370 IGKEED 375
>gi|352094758|ref|ZP_08955929.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351681098|gb|EHA64230.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 443
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 133/216 (61%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 133 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEWAALVEM 192
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 193 PVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 252
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 253 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 312
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
EE+AE+ +++++L + S + P SL+ IG ++
Sbjct: 313 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED 348
>gi|409993807|ref|ZP_11276936.1| RNA polymerase sigma factor RpoD [Arthrospira platensis str.
Paraca]
gi|291570496|dbj|BAI92768.1| principal RNA polymerase sigma factor SigA [Arthrospira platensis
NIES-39]
gi|409935351|gb|EKN76886.1| RNA polymerase sigma factor RpoD [Arthrospira platensis str.
Paraca]
Length = 387
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 106/247 (42%), Positives = 154/247 (62%), Gaps = 2/247 (0%)
Query: 183 EKAAANVMSVKSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQ 240
E++ ++ K+G ++ R+R ++ Y+ D +R RLL A+EE++L+ I
Sbjct: 46 EESQSDTELAKTGGAAKSRRRAQTKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIA 105
Query: 241 DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVIS 300
DLL+LE +RE L E P +WA A + E RRRL G KDKM+ SN+RLV+S
Sbjct: 106 DLLELERIREKLIEHYHREPNEKEWANAVDMRLPEFRRRLFLGRRAKDKMVQSNLRLVVS 165
Query: 301 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 360
IAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRT
Sbjct: 166 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 225
Query: 361 IRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQ 420
IRLP H+ E R+K+ K L E GR P EE+A +++++L + S + P SL+
Sbjct: 226 IRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLET 285
Query: 421 KIGINQN 427
IG ++
Sbjct: 286 PIGKEED 292
>gi|209523577|ref|ZP_03272131.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|376004385|ref|ZP_09782099.1| RNA polymerase sigma factor rpoD [Arthrospira sp. PCC 8005]
gi|209495982|gb|EDZ96283.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|375327277|emb|CCE17852.1| RNA polymerase sigma factor rpoD [Arthrospira sp. PCC 8005]
Length = 387
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 107/247 (43%), Positives = 153/247 (61%), Gaps = 2/247 (0%)
Query: 183 EKAAANVMSVKSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQ 240
E++ + K+GS + R+R ++ Y+ D +R RLL A+EE++L+ I
Sbjct: 46 EESQSETELAKAGSAGKSRRRAQTKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIA 105
Query: 241 DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVIS 300
DLL+LE +RE L E P +WA A + E RRRL G KDKM+ SN+RLV+S
Sbjct: 106 DLLELERIREKLIEHYHREPNEKEWANAVDMRLPEFRRRLFLGRRAKDKMVQSNLRLVVS 165
Query: 301 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 360
IAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRT
Sbjct: 166 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 225
Query: 361 IRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQ 420
IRLP H+ E R+K+ K L E GR P EE+A +++++L + S + P SL+
Sbjct: 226 IRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLET 285
Query: 421 KIGINQN 427
IG ++
Sbjct: 286 PIGKEED 292
>gi|72383665|ref|YP_293020.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
NATL2A]
gi|72003515|gb|AAZ59317.1| sigma-70 factor [Prochlorococcus marinus str. NATL2A]
Length = 420
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 95/212 (44%), Positives = 132/212 (62%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL+LE G P+ +WA A +
Sbjct: 108 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEEEAAQFESENGHFPSVKEWAVLADM 167
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 168 PLARFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 227
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 228 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 287
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
EE+AE+ +++++L + S + P SL+ IG
Sbjct: 288 EEIAESMEMTIEKLRFIAKSAQLPISLETPIG 319
>gi|423065852|ref|ZP_17054642.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|406712610|gb|EKD07794.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 372
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 107/247 (43%), Positives = 153/247 (61%), Gaps = 2/247 (0%)
Query: 183 EKAAANVMSVKSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQ 240
E++ + K+GS + R+R ++ Y+ D +R RLL A+EE++L+ I
Sbjct: 31 EESQSETELAKAGSAGKSRRRAQTKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIA 90
Query: 241 DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVIS 300
DLL+LE +RE L E P +WA A + E RRRL G KDKM+ SN+RLV+S
Sbjct: 91 DLLELERIREKLIEHYHREPNEKEWANAVDMRLPEFRRRLFLGRRAKDKMVQSNLRLVVS 150
Query: 301 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 360
IAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRT
Sbjct: 151 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 210
Query: 361 IRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQ 420
IRLP H+ E R+K+ K L E GR P EE+A +++++L + S + P SL+
Sbjct: 211 IRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLET 270
Query: 421 KIGINQN 427
IG ++
Sbjct: 271 PIGKEED 277
>gi|88807657|ref|ZP_01123169.1| RNA polymerase sigma factor [Synechococcus sp. WH 7805]
gi|88788871|gb|EAR20026.1| RNA polymerase sigma factor [Synechococcus sp. WH 7805]
Length = 447
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 133/216 (61%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 137 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEWAALVEM 196
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 197 PVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 256
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 257 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 316
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
EE+AE+ +++++L + S + P SL+ IG ++
Sbjct: 317 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED 352
>gi|357510769|ref|XP_003625673.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
gi|355500688|gb|AES81891.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
Length = 557
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 112/309 (36%), Positives = 174/309 (56%), Gaps = 22/309 (7%)
Query: 159 QVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKR--PSVQE-VDYSDPLR 215
++ +SI ++ RR +RK ++ + + K + RR R ++E +D + LR
Sbjct: 190 KIVRSIRLKERRSKQRKVSNSKVLDD---EMYLTKKSNVQRRLRLEKKLKEGLDGNHALR 246
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
+ + +LL+ EE QL A IQDL KL+ + L G PT A+WA G+ R+
Sbjct: 247 LFLWSPETKQLLSIEEESQLIAQIQDLFKLKETKIKLQSHFGREPTLAEWADGVGLSCRD 306
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 335
L++RL+ G KDK+I +N+RLV+ IAK YQG G++LQDL+QEG GL+R EKF G
Sbjct: 307 LQKRLHCGNRSKDKLIHANLRLVVHIAKYYQGRGLSLQDLLQEGSMGLMRSVEKFKPQAG 366
Query: 336 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVA 395
+FSTYA+WWI+Q +R++L S+TIRLP + ++ EA+K E HP EE+A
Sbjct: 367 CRFSTYAYWWIRQTIRRALFLHSKTIRLPENFYALLGKIAEAKKSYIKEGNLHPTKEEIA 426
Query: 396 EATGLSMKRLHAVLLSPKAPRSLD-----------QKIGINQNLK-PSVCFILNLADS-- 441
+ G+++ RL +L S + P S++ Q+I + +++ P+VC L S
Sbjct: 427 KRVGITVDRLEMLLFSTRTPLSMERAVWADSDTTFQEITADSSIEIPNVCVAKQLMRSHV 486
Query: 442 --LIIFFPP 448
L+ PP
Sbjct: 487 RNLLGILPP 495
>gi|297741628|emb|CBI32760.3| unnamed protein product [Vitis vinifera]
Length = 561
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 106/266 (39%), Positives = 162/266 (60%), Gaps = 11/266 (4%)
Query: 166 VRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRR---KRPSVQEVDYSDPLRYLRATTS 222
VRS R ER++++ R + A V SRR +R + D DPLR
Sbjct: 204 VRSTRLLERRSKKRRNPKVA------VHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPE 257
Query: 223 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 282
+ +LLTA EE +L IQ+L++LE +++ L PT +WA A G+ + L+ +L+
Sbjct: 258 TRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHS 317
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 342
G + K+I +N+R+V+ IAK YQG G+NLQDL+QEG GL+ EKF + G +F++YA
Sbjct: 318 GNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYA 377
Query: 343 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH-PNNEEVAEATGLS 401
+WWI+QAVRK++ SRTIRLP +M +VKEA K+L+ + G H P EE+AE G++
Sbjct: 378 YWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKEA-KRLFIQEGHHDPTKEEIAERVGIT 436
Query: 402 MKRLHAVLLSPKAPRSLDQKIGINQN 427
+++L +LL + P S+ Q + +Q+
Sbjct: 437 IEKLQRLLLHTRMPLSMQQPVWADQD 462
>gi|33866315|ref|NP_897874.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8102]
gi|33639290|emb|CAE08298.1| Putative principal RNA polymerase sigma factor [Synechococcus sp.
WH 8102]
Length = 471
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 133/216 (61%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 161 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGREPDKKEWAALVEM 220
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 221 PLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 280
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 281 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 340
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
EE+AE+ +++++L + S + P SL+ IG ++
Sbjct: 341 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED 376
>gi|359481391|ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
Length = 572
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 106/266 (39%), Positives = 162/266 (60%), Gaps = 11/266 (4%)
Query: 166 VRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRR---KRPSVQEVDYSDPLRYLRATTS 222
VRS R ER++++ R + A V SRR +R + D DPLR
Sbjct: 215 VRSTRLLERRSKKRRNPKVA------VHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPE 268
Query: 223 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 282
+ +LLTA EE +L IQ+L++LE +++ L PT +WA A G+ + L+ +L+
Sbjct: 269 TRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHS 328
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 342
G + K+I +N+R+V+ IAK YQG G+NLQDL+QEG GL+ EKF + G +F++YA
Sbjct: 329 GNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYA 388
Query: 343 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH-PNNEEVAEATGLS 401
+WWI+QAVRK++ SRTIRLP +M +VKEA K+L+ + G H P EE+AE G++
Sbjct: 389 YWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKEA-KRLFIQEGHHDPTKEEIAERVGIT 447
Query: 402 MKRLHAVLLSPKAPRSLDQKIGINQN 427
+++L +LL + P S+ Q + +Q+
Sbjct: 448 IEKLQRLLLHTRMPLSMQQPVWADQD 473
>gi|18404292|ref|NP_565856.1| RNApolymerase sigma-subunit F [Arabidopsis thaliana]
gi|75173811|sp|Q9LD95.1|SIGF_ARATH RecName: Full=RNA polymerase sigma factor sigF, chloroplastic;
Short=Sigma factor F; Short=Sigma-F; AltName:
Full=Protein SINGLET OXYGEN-LINKED DEATH ACTIVATOR 8;
AltName: Full=RNA polymerase sigma factor sig6;
Short=Atsig6; Short=Sigma factor 6; Flags: Precursor
gi|7209640|dbj|BAA92288.1| SigF [Arabidopsis thaliana]
gi|7688083|emb|CAB89775.1| sigma factor-like protein [Arabidopsis thaliana]
gi|16604647|gb|AAL24116.1| putative RNA polymerase sigma-70 factor [Arabidopsis thaliana]
gi|20197948|gb|AAD31584.2| putative RNA polymerase sigma-70 factor [Arabidopsis thaliana]
gi|20259557|gb|AAM14121.1| putative RNA polymerase sigma-70 factor protein [Arabidopsis
thaliana]
gi|330254238|gb|AEC09332.1| RNApolymerase sigma-subunit F [Arabidopsis thaliana]
Length = 547
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 104/262 (39%), Positives = 155/262 (59%), Gaps = 1/262 (0%)
Query: 166 VRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSR 225
VRS+RQ ER+A+ RA + + TS +K+ Q D D L+ + +
Sbjct: 188 VRSKRQLERRAKNRRAPKSNDVDDEGYVPQKTSAKKKYK-QGADNDDALQLFLWGPETKQ 246
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE +L + IQ LLKLE ++ L + G PT +WA A G+ L+ ++ G
Sbjct: 247 LLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRS 306
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
++K+IT+N+RLV+ IAK YQ G+N QDL+QEG GL++ EKF G +F+TYA+WW
Sbjct: 307 SREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWW 366
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q++RKS+ SRTIRLP ++ +V EARK E P+ EE+A G+S ++L
Sbjct: 367 IRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKL 426
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
+L + + P S+ Q I +Q+
Sbjct: 427 DKLLYNTRTPLSMQQPIWSDQD 448
>gi|148238947|ref|YP_001224334.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 7803]
gi|147847486|emb|CAK23037.1| RNA polymerase sigma factor RpoD, sigma-70 family [Synechococcus
sp. WH 7803]
Length = 450
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 133/216 (61%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 140 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEWAALVEM 199
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 200 PVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 259
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 260 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 319
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
EE+AE+ +++++L + S + P SL+ IG ++
Sbjct: 320 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED 355
>gi|116072877|ref|ZP_01470142.1| RNA polymerase sigma factor [Synechococcus sp. BL107]
gi|116064403|gb|EAU70164.1| RNA polymerase sigma factor [Synechococcus sp. BL107]
Length = 451
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 133/216 (61%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 141 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDKKEWAALVEM 200
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 201 PLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 260
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 261 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 320
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
EE+AE+ +++++L + S + P SL+ IG ++
Sbjct: 321 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED 356
>gi|56750888|ref|YP_171589.1| RNA polymerase sigma factor RpoD [Synechococcus elongatus PCC 6301]
gi|56685847|dbj|BAD79069.1| principal RNA polymerase sigma factor RpoD1 [Synechococcus
elongatus PCC 6301]
Length = 399
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 101/216 (46%), Positives = 139/216 (64%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL A+EE++L+ I DLL LE +R+ L E+ P+ A+WAAA
Sbjct: 89 DSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDS 148
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
E RRRL G KDKM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 149 PLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 208
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 209 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 268
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
EE+A +++++L + S + P SL+ IG ++
Sbjct: 269 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED 304
>gi|217140|dbj|BAA01749.1| principal sigma factor [Synechococcus elongatus PCC 7942]
Length = 384
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 101/216 (46%), Positives = 139/216 (64%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL A+EE++L+ I DLL LE +R+ L E+ P+ A+WAAA
Sbjct: 74 DSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDS 133
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
E RRRL G KDKM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 134 PLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 193
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 194 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 253
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
EE+A +++++L + S + P SL+ IG ++
Sbjct: 254 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED 289
>gi|81299460|ref|YP_399668.1| RNA polymerase sigma factor RpoD [Synechococcus elongatus PCC 7942]
gi|93141306|sp|P38023.2|RPOD1_SYNE7 RecName: Full=RNA polymerase sigma factor rpoD1
gi|81168341|gb|ABB56681.1| Sigma-70 factor [Synechococcus elongatus PCC 7942]
Length = 399
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 101/216 (46%), Positives = 139/216 (64%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL A+EE++L+ I DLL LE +R+ L E+ P+ A+WAAA
Sbjct: 89 DSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDS 148
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
E RRRL G KDKM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 149 PLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 208
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 209 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTE 268
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
EE+A +++++L + S + P SL+ IG ++
Sbjct: 269 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED 304
>gi|78185245|ref|YP_377680.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9902]
gi|78169539|gb|ABB26636.1| Sigma-70 factor [Synechococcus sp. CC9902]
Length = 451
Score = 191 bits (484), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 133/216 (61%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 141 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDKKEWAALVEM 200
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 201 PLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 260
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 261 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 320
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
EE+AE+ +++++L + S + P SL+ IG ++
Sbjct: 321 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED 356
>gi|159903037|ref|YP_001550381.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9211]
gi|159888213|gb|ABX08427.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9211]
Length = 425
Score = 191 bits (484), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 95/212 (44%), Positives = 133/212 (62%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE + G P+ +WAA +
Sbjct: 115 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLNLEEIAIQFESENGHYPSKKEWAALVEM 174
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 175 PVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 234
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P+
Sbjct: 235 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSE 294
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
EE+AE+ +++++L + S + P SL+ IG
Sbjct: 295 EEIAESMEMTIEKLRFIAKSAQLPISLETPIG 326
>gi|6273430|emb|CAB60192.1| putative sigma-like transcription factor [Arabidopsis thaliana]
Length = 487
Score = 191 bits (484), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 104/262 (39%), Positives = 155/262 (59%), Gaps = 1/262 (0%)
Query: 166 VRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSR 225
VRS+RQ ER+A+ RA + + TS +K+ Q D D L+ + +
Sbjct: 128 VRSKRQLERRAKNRRAPKSNDVDDEGYVPQKTSAKKKYK-QGADNDDALQLFLWGPETKQ 186
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE +L + IQ LLKLE ++ L + G PT +WA A G+ L+ ++ G
Sbjct: 187 LLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRS 246
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
++K+IT+N+RLV+ IAK YQ G+N QDL+QEG GL++ EKF G +F+TYA+WW
Sbjct: 247 SREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWW 306
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q++RKS+ SRTIRLP ++ +V EARK E P+ EE+A G+S ++L
Sbjct: 307 IRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKL 366
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
+L + + P S+ Q I +Q+
Sbjct: 367 DKLLYNTRTPLSMQQPIWSDQD 388
>gi|1769596|gb|AAB39997.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 317
Score = 191 bits (484), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 142/217 (65%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+DP+R LLT EE+ S +Q ++ LE L+ L+E+ P+ +WA AA
Sbjct: 8 ADPVRTYLKEIGRVPLLTHEEEVLYSRRVQKMVNLEKLKAELAEKQDQEPSLKEWAQAAN 67
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
+ QR+L+++L G K KM+ +N+RLV+S+AK Y M+L DL+QEG G+ RG EKF
Sbjct: 68 LSQRQLKKQLLLGKQAKQKMVEANLRLVVSVAKKYIKRNMDLLDLIQEGTIGMQRGVEKF 127
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KG++FSTYA+WWI+QA+ +++++QSRTIRLP H+ E ++K+A++QL NGR +
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEQSRTIRLPIHITEKLNKIKKAQRQLAQANGRSAS 187
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
E+A+ GL+ K++ L + P SLD ++G N +
Sbjct: 188 IPELADELGLTTKQVRDYLEKSRQPLSLDLRVGDNND 224
>gi|297827203|ref|XP_002881484.1| RNA polymerase sigma-70 factor [Arabidopsis lyrata subsp. lyrata]
gi|297327323|gb|EFH57743.1| RNA polymerase sigma-70 factor [Arabidopsis lyrata subsp. lyrata]
Length = 546
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 102/262 (38%), Positives = 156/262 (59%), Gaps = 1/262 (0%)
Query: 166 VRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSR 225
VRS+RQ ER+A+ RA + + + +K+ Q VD D L+ + +
Sbjct: 187 VRSKRQLERRAKNRRAPKSNDVDNEGYVPQKINAKKKFK-QGVDTDDALQLFLWGPETKQ 245
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE +L + IQ LLKLE ++ L + G PT +WA A G+ +L+ ++ G
Sbjct: 246 LLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPDLKSEIHRGRS 305
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
++K+IT+N+RLV+ IAK YQ G+N QDL+QEG GL++ EKF G +F+TYA+WW
Sbjct: 306 SREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWW 365
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q++RKS+ SRTIRLP ++ +V EARK E P+ E++A G+S ++L
Sbjct: 366 IRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEQLAGHVGVSTEKL 425
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
+L + + P S+ Q I +Q+
Sbjct: 426 DKLLYNTRTPLSMQQPIWSDQD 447
>gi|113954073|ref|YP_731235.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9311]
gi|113881424|gb|ABI46382.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9311]
Length = 440
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 133/216 (61%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 130 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPETKEWAALVEM 189
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 190 PVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 249
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 250 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 309
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
EE+AE+ +++++L + S + P SL+ IG ++
Sbjct: 310 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED 345
>gi|170078438|ref|YP_001735076.1| sigma factor [Synechococcus sp. PCC 7002]
gi|169886107|gb|ACA99820.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 318
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 142/217 (65%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+DP+R LLT EE+ S +Q ++ LE L+ L+E+ P+ +WA AA
Sbjct: 8 ADPVRTYLKEIGRVPLLTHEEEVLYSRRVQKMVNLEKLKAELAEKQDQEPSLKEWAQAAN 67
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
+ QREL+++L G K KM+ +N+RLV+S+AK Y M+L DL+QEG G+ RG EKF
Sbjct: 68 LSQRELKKQLLLGKQAKQKMVEANLRLVVSVAKKYIKRNMDLLDLIQEGTIGMQRGVEKF 127
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KG++FSTYA+WWI+QA+ ++++++SRTIRLP H+ E ++K+A++QL NGR +
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQANGRSAS 187
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
E+A+ GL+ K++ L + P SLD ++G N +
Sbjct: 188 IPELADELGLTTKQVRDYLEKSRQPLSLDLRVGDNND 224
>gi|260435157|ref|ZP_05789127.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8109]
gi|260413031|gb|EEX06327.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8109]
Length = 458
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 133/216 (61%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 148 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDNKEWAALVEM 207
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 208 PLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 267
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 268 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 327
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
EE+AE+ +++++L + S + P SL+ IG ++
Sbjct: 328 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED 363
>gi|78212231|ref|YP_381010.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9605]
gi|78196690|gb|ABB34455.1| Sigma-70 factor [Synechococcus sp. CC9605]
Length = 435
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 133/216 (61%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 125 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDNKEWAALVEM 184
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 185 PLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 244
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 245 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 304
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
EE+AE+ +++++L + S + P SL+ IG ++
Sbjct: 305 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED 340
>gi|224068757|ref|XP_002326192.1| predicted protein [Populus trichocarpa]
gi|222833385|gb|EEE71862.1| predicted protein [Populus trichocarpa]
Length = 535
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 101/262 (38%), Positives = 152/262 (58%), Gaps = 1/262 (0%)
Query: 166 VRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSR 225
VRSRR R++ RA + + S S +KR S Q D +DPLR + +
Sbjct: 176 VRSRRHLARQSLNRRAPKTKDLIFETYDSKSADIQKRLS-QGFDPNDPLRLFLWGPETKQ 234
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE +L A IQDL+ LEG++ L + G PT +WA A G+ L+ +L+ G
Sbjct: 235 LLTAKEEFELIAQIQDLMNLEGVKNRLESQFGREPTLVEWAQAVGLSCHVLKLQLHSGNR 294
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
++K+I +N+R+V+ IAK YQ G+ LQDL+QEG GL++ EKF G +F+TYA+WW
Sbjct: 295 SREKLINANLRMVVHIAKRYQNRGLGLQDLLQEGTVGLMKSIEKFKPQAGCRFATYAYWW 354
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q + K++ SRTIRLP ++ +V EA++ E P EE+A G+++ +L
Sbjct: 355 IRQTITKAIFQHSRTIRLPENVYGLLGKVMEAKRSYIQEGNHQPTAEEIARRVGIAIDKL 414
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
+L + P S+ Q + +QN
Sbjct: 415 EKLLCFTRTPLSMQQTVWSDQN 436
>gi|356536959|ref|XP_003536999.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 571
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 96/259 (37%), Positives = 155/259 (59%)
Query: 169 RRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLT 228
RR +RK +++ + + R ++ +E+D DPLR + +LLT
Sbjct: 214 RRSKQRKVPKSKVIDDETYLARKDDAQEKLRAEKKKNEELDQDDPLRLFLWGPETKQLLT 273
Query: 229 ANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKD 288
+E QL + IQDLL+LE ++ L + G PT A+WA AG++ R L+ +L+ G ++
Sbjct: 274 LEQESQLISQIQDLLRLEEVKTNLQSQFGREPTMAEWAEGAGLNCRLLQSQLHSGNRSRE 333
Query: 289 KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ 348
K+I +N+R+V+ +AK+YQG G++LQDL+QEG GL++ EKF+ G +F YA WWI+Q
Sbjct: 334 KLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSMGLMKSVEKFNPLAGSRFGNYAFWWIRQ 393
Query: 349 AVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAV 408
A+RK++ SRTIRLP + +V EA+K E HP EE+A G++++++ +
Sbjct: 394 AIRKAVFRHSRTIRLPEKVFILLGKVMEAKKLYIQEGNLHPTKEELARRVGVTVEKIDKL 453
Query: 409 LLSPKAPRSLDQKIGINQN 427
L S + P S+ Q + +QN
Sbjct: 454 LFSARIPISMQQTVWADQN 472
>gi|427701422|ref|YP_007044644.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
gi|427344590|gb|AFY27303.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
Length = 432
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 102/248 (41%), Positives = 143/248 (57%), Gaps = 9/248 (3%)
Query: 180 RAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGI 239
R K A + S+K G V D +R RLL +EE++L+ I
Sbjct: 99 RKDAKGAKALASIKVGPKG---------VYTEDSIRVYLQEIGRIRLLRPDEEIELARKI 149
Query: 240 QDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVI 299
DLL+LE G P +WAA + + RRRL G K+KM+ SN+RLV+
Sbjct: 150 ADLLELEEKAAEFEADKGHFPDTKEWAAIFDMPLIKFRRRLMLGRRAKEKMVLSNLRLVV 209
Query: 300 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 359
SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSR
Sbjct: 210 SIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSR 269
Query: 360 TIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLD 419
TIRLP H+ E R+K+ K L E GR P EE+AE+ +++++L + S + P SL+
Sbjct: 270 TIRLPVHLYETISRIKKTTKTLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLE 329
Query: 420 QKIGINQN 427
IG ++
Sbjct: 330 TPIGKEED 337
>gi|428217892|ref|YP_007102357.1| RpoD subfamily RNA polymerase sigma-70 subunit [Pseudanabaena sp.
PCC 7367]
gi|427989674|gb|AFY69929.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena sp.
PCC 7367]
Length = 412
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 98/220 (44%), Positives = 136/220 (61%), Gaps = 4/220 (1%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG-GSP---TFAQWAA 267
D +R RLL A+EE++L+ I DLL+LE RE L+ G P + + WA
Sbjct: 98 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELEQQREELANEMGLDDPEEVSDSDWAV 157
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
+ RRRL G KDKM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R A
Sbjct: 158 KVDMPLPRFRRRLYEGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAA 217
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
EKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR
Sbjct: 218 EKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGR 277
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
P EE+A +++++L + S + P SL+ IG ++
Sbjct: 278 KPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED 317
>gi|425471805|ref|ZP_18850656.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9701]
gi|389882237|emb|CCI37274.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9701]
Length = 318
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 143/220 (65%), Gaps = 2/220 (0%)
Query: 209 DYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
+ +DP+R YLR LLT EE+ + +Q L+ LE ++E L + G P+ QW+
Sbjct: 6 NLTDPVRAYLREIGRVP-LLTHEEEILYAKQVQRLIFLEKIKESLKAKLGSDPSDRQWSE 64
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
AA + + +LRR L G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG
Sbjct: 65 AAEISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGV 124
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
EKFD +KG++FSTYA+WWI+QA+ ++++++SRTIRLP H+ E ++K+A++QL + GR
Sbjct: 125 EKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGR 184
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
E+AE L+ K++ L + P SLD K+G NQ+
Sbjct: 185 AATIAELAEELDLTPKQVRDYLERSRQPLSLDLKVGDNQD 224
>gi|22298160|ref|NP_681407.1| RNA polymerase sigma factor RpoD [Thermosynechococcus elongatus
BP-1]
gi|22294339|dbj|BAC08169.1| principal RNA polymerase sigma factor [Thermosynechococcus
elongatus BP-1]
Length = 418
Score = 187 bits (475), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 101/239 (42%), Positives = 147/239 (61%), Gaps = 7/239 (2%)
Query: 195 GSTSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLS 253
G SRR R V++ Y+ D +R RLL A+EE++L+ I DLL++E +R+ L
Sbjct: 86 GRASRR-RTQVKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLEMERVRDRLC 144
Query: 254 ERCGGSPTFAQ-----WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGA 308
+ G + + WA G+ R RL G K+KM+ SN+RLV+SIAK Y
Sbjct: 145 QELGCTAEELERNPEPWAKELGMTVPAFRHRLFVGRKAKEKMVQSNLRLVVSIAKKYMNR 204
Query: 309 GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV 368
G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+
Sbjct: 205 GLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 264
Query: 369 EATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
E R+K+ K L E GR P EE+A+ +++++L + S + P SL+ IG ++
Sbjct: 265 ETISRIKKTTKLLSQEMGRKPTEEEIADRMEMTIEKLRFIAKSAQLPISLETPIGKEED 323
>gi|427417818|ref|ZP_18908001.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425760531|gb|EKV01384.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 376
Score = 187 bits (475), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 100/216 (46%), Positives = 138/216 (63%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL A EE++L+ I DLL+LE +R+ LS+ P A WAAA +
Sbjct: 66 DSIRLYLQEIGRIRLLRAEEEIELARKIADLLELERIRDDLSDGMDHEPDDADWAAAVDM 125
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
RRRL+ G KDKM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 126 PLPAFRRRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 185
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 186 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTE 245
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
EE+A +++++L + S + P SL+ IG ++
Sbjct: 246 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED 281
>gi|166367266|ref|YP_001659539.1| RNA polymerase sigma factor SigD [Microcystis aeruginosa NIES-843]
gi|166089639|dbj|BAG04347.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 318
Score = 187 bits (475), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 142/218 (65%), Gaps = 2/218 (0%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP+R YLR LLT EE+ + +Q L+ LE ++E L + G P+ QW+ AA
Sbjct: 8 TDPVRAYLREIGRVP-LLTHEEEILYAKQVQRLIFLEKIKESLKVKLGSDPSDRQWSEAA 66
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
+ + +LRR L G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EK
Sbjct: 67 EISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEK 126
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
FD +KG++FSTYA+WWI+QA+ ++++++SRTIRLP H+ E ++K+A++QL + GR
Sbjct: 127 FDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAA 186
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
E+AE L+ K++ L + P SLD K+G NQ+
Sbjct: 187 TIAELAEELDLTPKQVRDYLERSRQPLSLDLKVGDNQD 224
>gi|425455366|ref|ZP_18835086.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9807]
gi|389803770|emb|CCI17345.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9807]
Length = 318
Score = 187 bits (475), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 144/220 (65%), Gaps = 2/220 (0%)
Query: 209 DYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
+++DP+R YLR LL+ EE+ + +Q L+ LE ++E L + G P+ QW+
Sbjct: 6 NHTDPVRAYLREIGRVP-LLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSE 64
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
AA + + +LRR L G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG
Sbjct: 65 AAEISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGV 124
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
EKFD +KG++FSTYA+WWI+QA+ ++++++SRTIRLP H+ E ++K+A++QL + GR
Sbjct: 125 EKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGR 184
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
E+AE L+ K++ L + P SLD K+G NQ+
Sbjct: 185 AATIAELAEELDLTPKQVRDYLERSRQPLSLDLKVGDNQD 224
>gi|425445105|ref|ZP_18825143.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9443]
gi|389734975|emb|CCI01445.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9443]
Length = 318
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 144/220 (65%), Gaps = 2/220 (0%)
Query: 209 DYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
+++DP+R YLR LL+ EE+ + +Q L+ LE ++E L + G P+ QW+
Sbjct: 6 NHTDPVRAYLREIGRVP-LLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSE 64
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
AA + + +LRR L G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG
Sbjct: 65 AAEISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGV 124
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
EKFD +KG++FSTYA+WWI+QA+ ++++++SRTIRLP H+ E ++K+A++QL + GR
Sbjct: 125 EKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGR 184
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
E+AE L+ K++ L + P SLD K+G NQ+
Sbjct: 185 AATIAELAEELDLTPKQVRDYLERSRQPLSLDLKVGDNQD 224
>gi|412993395|emb|CCO16928.1| RNA polymerase sigma factor RpoD [Bathycoccus prasinos]
Length = 733
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/235 (43%), Positives = 143/235 (60%), Gaps = 14/235 (5%)
Query: 204 SVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEG-LREVLSERCGGSPTF 262
S Q+VD YL+ S S LL ANEE+QL+ IQDL+ LE +E++++ G+
Sbjct: 373 SAQQVDSMKV--YLKEIGSVS-LLNANEEVQLARKIQDLMNLETTYKELVAKVAEGNDPI 429
Query: 263 AQ----------WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
AQ WA G+ + EL RL G K+ MI +N+RLV+SIAK Y M+
Sbjct: 430 AQTHGDKVTKSMWARELGLTEFELEMRLTEGKNAKNHMIQANLRLVVSIAKRYANRNMSF 489
Query: 313 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY 372
QDL+QEGC GL+RGAEKFD +G+KFSTYAHWWI+QAV +S+SDQSRTIRLP H+ E
Sbjct: 490 QDLIQEGCVGLIRGAEKFDFERGYKFSTYAHWWIRQAVTRSISDQSRTIRLPVHLFEIIS 549
Query: 373 RVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
R+ + ++ +NGR EE++ + ++ + + AP SL Q +G + +
Sbjct: 550 RMNKLEQKFIVQNGREATLEEISAMMEMPQVKITQIKKAAMAPVSLAQAVGADDD 604
>gi|390438835|ref|ZP_10227270.1| RNA polymerase sigma factor rpoD3 [Microcystis sp. T1-4]
gi|389837758|emb|CCI31394.1| RNA polymerase sigma factor rpoD3 [Microcystis sp. T1-4]
Length = 318
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 142/218 (65%), Gaps = 2/218 (0%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP+R YLR LLT EE+ + +Q L+ LE ++E L + G P+ QW+ AA
Sbjct: 8 TDPVRSYLREIGRVP-LLTHEEEILYAKQVQRLIFLEKIKESLRSQLGREPSDRQWSEAA 66
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
+ + +LRR L G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EK
Sbjct: 67 EISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEK 126
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
FD +KG++FSTYA+WWI+QA+ ++++++SRTIRLP H+ E ++K+A++QL + GR
Sbjct: 127 FDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAA 186
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
E+AE L+ K++ L + P SLD K+G NQ+
Sbjct: 187 TIAELAEELDLTPKQVRDYLERSRQPLSLDLKVGDNQD 224
>gi|312282671|dbj|BAJ34201.1| unnamed protein product [Thellungiella halophila]
Length = 547
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 103/265 (38%), Positives = 158/265 (59%), Gaps = 7/265 (2%)
Query: 166 VRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRR---KRPSVQEVDYSDPLRYLRATTS 222
VRS+RQ ER+A+ RA + +N M + G ++ K+ Q D D L+
Sbjct: 188 VRSKRQLERRAKNRRAPK---SNNMDSE-GYVPQKINAKKKMKQGFDTDDALQLFLWGPE 243
Query: 223 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 282
+ +LLTA EE +L A IQ L+KLE ++ L + G PT +WA A G+ L+ ++
Sbjct: 244 TKQLLTAKEEAELIAHIQHLIKLEKVKTKLESQNGCEPTIGEWAEAMGLSSPVLKSEIHR 303
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 342
G ++K+IT+N+RLV+ IAK YQ G+N QDL+QEG GL++ EKF G +F+TYA
Sbjct: 304 GRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYA 363
Query: 343 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSM 402
+WWI+Q++RKS+ SRTIRLP ++ +V EARK + P+ E++A G+S
Sbjct: 364 YWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCIQDGNYRPSKEQLASHVGVST 423
Query: 403 KRLHAVLLSPKAPRSLDQKIGINQN 427
++L +L + + P S+ Q I +Q+
Sbjct: 424 EKLDKLLYNTRTPLSMQQPIWSDQD 448
>gi|425441618|ref|ZP_18821888.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9717]
gi|425463479|ref|ZP_18842815.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9809]
gi|389717608|emb|CCH98320.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9717]
gi|389832304|emb|CCI24201.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9809]
Length = 318
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 142/218 (65%), Gaps = 2/218 (0%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP+R YLR LLT EE+ + +Q L+ LE ++E L + G P+ QW+ AA
Sbjct: 8 TDPVRAYLREIGRVP-LLTHEEEILYAKQVQRLIFLEKIKESLRAKLGREPSDRQWSEAA 66
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
+ + +LRR L G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EK
Sbjct: 67 EISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEK 126
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
FD +KG++FSTYA+WWI+QA+ ++++++SRTIRLP H+ E ++K+A++QL + GR
Sbjct: 127 FDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAA 186
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
E+AE L+ K++ L + P SLD K+G NQ+
Sbjct: 187 TIAELAEELDLTPKQVRDYLERSRQPLSLDLKVGDNQD 224
>gi|443668768|ref|ZP_21134260.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
gi|159026170|emb|CAO88820.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443330730|gb|ELS45425.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
Length = 318
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 142/218 (65%), Gaps = 2/218 (0%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP+R YLR LL+ EE+ + +Q L+ LE ++E L + G P+ QW+ AA
Sbjct: 8 TDPVRAYLREIGRVP-LLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAA 66
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
+ + +LRR L G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EK
Sbjct: 67 EISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEK 126
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
FD +KG++FSTYA+WWI+QA+ ++++++SRTIRLP H+ E ++K+A++QL + GR
Sbjct: 127 FDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAA 186
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
E+AE L+ K++ L + P SLD K+G NQ+
Sbjct: 187 TIAELAEELDLTPKQVRDYLERSRQPLSLDLKVGDNQD 224
>gi|356514352|ref|XP_003525870.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 360
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 170/282 (60%), Gaps = 10/282 (3%)
Query: 155 LLEEQVSQSIAVRSRRQTERKARRTRAAEKAAAN---VMSVKSGSTS--RRKRPSVQEVD 209
L + + ++ VRS R ER++++ + + + ++ K + R ++ +E D
Sbjct: 64 LADPSIGRNKTVRSTRLLERRSKQRKVPKSKVIDDETYLARKDDAQEKLRAEKKKNEEHD 123
Query: 210 YSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
DPLR + +LLT +E QL + IQDLL+LE ++ L + G PT A+WA A
Sbjct: 124 QDDPLRLFLWGPETKQLLTLEQESQLISQIQDLLRLEEVKTNLQSQFGREPTMAEWAEGA 183
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
G++ R L+ +L+ GI ++K+I +N+R+V+ +AK+YQG G++LQDL+QEG GL++ EK
Sbjct: 184 GLNCRLLQSQLHSGIRSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSMGLMKSVEK 243
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY----RVKEARKQLYSEN 385
F+ G +F YA WWI+QA+RK++ SRTIRLP ++ E + +V EA+K E
Sbjct: 244 FNPLAGSRFGNYAFWWIRQAIRKAVFRHSRTIRLPINL-EKVFILLGKVIEAKKLYIQEG 302
Query: 386 GRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
HP EE+A G++++++ +L S + P S+ Q + +QN
Sbjct: 303 NLHPTKEELARRVGVTVEKIDKLLFSARIPISMQQTVWADQN 344
>gi|425434950|ref|ZP_18815414.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9432]
gi|425452918|ref|ZP_18832733.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 7941]
gi|440756483|ref|ZP_20935684.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
gi|389675427|emb|CCH95484.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9432]
gi|389765103|emb|CCI08956.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 7941]
gi|440173705|gb|ELP53163.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
Length = 318
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 142/218 (65%), Gaps = 2/218 (0%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP+R YLR LL+ EE+ + +Q L+ LE ++E L + G P+ QW+ AA
Sbjct: 8 TDPVRAYLREIGRVP-LLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAA 66
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
+ + +LRR L G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EK
Sbjct: 67 EISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEK 126
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
FD +KG++FSTYA+WWI+QA+ ++++++SRTIRLP H+ E ++K+A++QL + GR
Sbjct: 127 FDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAA 186
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
E+AE L+ K++ L + P SLD K+G NQ+
Sbjct: 187 TIAELAEELDLTPKQVRDYLERSRQPLSLDLKVGDNQD 224
>gi|255076341|ref|XP_002501845.1| predicted protein [Micromonas sp. RCC299]
gi|226517109|gb|ACO63103.1| predicted protein [Micromonas sp. RCC299]
Length = 595
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 114/271 (42%), Positives = 168/271 (61%), Gaps = 12/271 (4%)
Query: 163 SIAVRSRRQT-ERKARRTR----AAEKAAANVMSVKSGSTSRRKR----PSVQEVDYSDP 213
S A R++R+T +R + +T+ AE +A + S + SRR R + +D
Sbjct: 212 STAPRAKRKTVKRVSTKTQLTGIVAEPGSAQEANEASAAESRRNRRIARKNADTKKQTDS 271
Query: 214 LR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGS-PTFAQWAAAAGV 271
++ YL+ + S LLT EE++L+ IQDL+ L + E L E GG PT WA +
Sbjct: 272 MKTYLKDIGTVS-LLTGAEEVELAKRIQDLMYLNSVCERLEEENGGKEPTRFMWAIECNI 330
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
++EL RRL G K+ MI +N+RLV+SIAK Y M+ QDL+QEGC GL+RGAEKFD
Sbjct: 331 TEQELERRLEEGKRAKNAMIQANLRLVVSIAKRYANKSMSFQDLIQEGCVGLIRGAEKFD 390
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
+G+KFSTYAHWWI+QAV +S+SDQSRTIRLP H+ E R+ + +Q+ + GR P +
Sbjct: 391 FKRGYKFSTYAHWWIRQAVTRSISDQSRTIRLPVHLFEIISRMSKVERQMVLKLGRDPTH 450
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKI 422
EE+A+A ++++++ + + P SL Q +
Sbjct: 451 EELADAMEMTVEKIKQIKKASLVPISLSQTV 481
>gi|425458944|ref|ZP_18838430.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9808]
gi|389823431|emb|CCI28324.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9808]
Length = 318
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 142/218 (65%), Gaps = 2/218 (0%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP+R YLR LL+ EE+ + +Q L+ LE ++E L + G P+ QW+ AA
Sbjct: 8 TDPVRAYLREIGRVP-LLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAA 66
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
+ + +LRR L G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EK
Sbjct: 67 EISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEK 126
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
FD +KG++FSTYA+WWI+QA+ ++++++SRTIRLP H+ E ++K+A++QL + GR
Sbjct: 127 FDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAA 186
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
E+AE L+ K++ L + P SLD K+G NQ+
Sbjct: 187 TIAELAEELDLTPKQVRDYLERSRQPLSLDLKVGDNQD 224
>gi|172038507|ref|YP_001805008.1| RNA polymerase sigma factor SigD [Cyanothece sp. ATCC 51142]
gi|354554149|ref|ZP_08973454.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171699961|gb|ACB52942.1| group 2 sigma-70 RNA polymerase sigma factor D [Cyanothece sp. ATCC
51142]
gi|353553828|gb|EHC23219.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 318
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 138/216 (63%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
DP+R LLT EE+ + +Q L+ LE LRE + E G PT +QWA AA +
Sbjct: 9 DPVRAYLKEIGRVPLLTHEEEILYAKRVQRLVNLEKLREEIIEETGQEPTESQWAKAAKL 68
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+RE R + G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD
Sbjct: 69 SKREFRSIVESGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFD 128
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
+KG++FSTYA+WWI+QA+ ++++++SRTIRLP H+ E ++K+A+++L + GR
Sbjct: 129 PTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRELSQQKGRAATV 188
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
E+AE L+ K++ L + P SLD ++G NQ+
Sbjct: 189 TELAEELDLTPKQVREYLERARQPLSLDLRVGDNQD 224
>gi|422303427|ref|ZP_16390778.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9806]
gi|389791615|emb|CCI12597.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9806]
Length = 318
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 142/218 (65%), Gaps = 2/218 (0%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP+R YLR LL+ EE+ + +Q L+ LE ++E L + G P+ QW+ AA
Sbjct: 8 TDPVRAYLREIGRVP-LLSHEEEILYAKQVQRLIFLEKIKESLRAKLGRDPSDRQWSEAA 66
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
+ + +LRR L G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EK
Sbjct: 67 EISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEK 126
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
FD +KG++FSTYA+WWI+QA+ ++++++SRTIRLP H+ E ++K+A++QL + GR
Sbjct: 127 FDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQDKGRAA 186
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
E+AE L+ K++ L + P SLD K+G NQ+
Sbjct: 187 TIAELAEELDLTPKQVRDYLERARQPLSLDLKVGDNQD 224
>gi|356548319|ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor rpoD [Glycine max]
Length = 574
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 94/259 (36%), Positives = 153/259 (59%)
Query: 169 RRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLT 228
RR +RK +++ + + R ++ +E+D +DPL + + +LLT
Sbjct: 217 RRSKQRKVPKSKVIDDETYLARKDDAHEKLRVEKKKNEELDQNDPLCFFLRGPETKQLLT 276
Query: 229 ANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKD 288
+E QL + IQDLL+LE ++ L + G PT A+WA G++ R L +L G ++
Sbjct: 277 LEQESQLISQIQDLLRLEEVKTKLQSQFGREPTMAEWAEGVGLNCRMLHAQLRSGSRSRE 336
Query: 289 KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ 348
K+I +N+R+V+ +AK+YQG G++LQDL+QEG GL++ EKF+ G +F YA WWI+Q
Sbjct: 337 KLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSMGLMKSVEKFNPLVGSRFGNYAFWWIRQ 396
Query: 349 AVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAV 408
A+RK++ SRTIRLP + +V EA+K E HP EE+A G++++++ +
Sbjct: 397 AIRKAVFRHSRTIRLPEKVFILLGKVMEAKKLYIQEGNLHPTKEELARRVGVTVEKIDKL 456
Query: 409 LLSPKAPRSLDQKIGINQN 427
L S + P S+ Q + +QN
Sbjct: 457 LFSARIPISMQQTVWADQN 475
>gi|443325471|ref|ZP_21054165.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442794934|gb|ELS04327.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 380
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 112/292 (38%), Positives = 163/292 (55%), Gaps = 31/292 (10%)
Query: 137 QQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGS 196
++P N DLE + ++ S+ IA K A+ + S +
Sbjct: 24 EEPQNLKGDLESSKKD-------SSEKIA------------------KLASKLASTPRRT 58
Query: 197 TSR-RKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 255
R RK+P + D +R RLL A EE++L+ I DLL+LE +RE + +
Sbjct: 59 AERGRKKPYTE-----DSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIRERIEDE 113
Query: 256 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 315
+ A+W ++ R RRRL G KDKM+ SN+RLV+SIAK Y G++ QDL
Sbjct: 114 LDREISDAEWGKEVDMELRPFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 173
Query: 316 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVK 375
+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K
Sbjct: 174 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIK 233
Query: 376 EARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
+ K L E GR P EE+AE +++++L + S + P SL+ IG ++
Sbjct: 234 KTTKILSQEMGRKPTEEEIAERMEMTIEKLRFIAKSAQLPISLETPIGKEED 285
>gi|254422659|ref|ZP_05036377.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196190148|gb|EDX85112.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 298
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 86/202 (42%), Positives = 133/202 (65%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ L +Q L+ L + L + PT +WAAA G+ + EL + G
Sbjct: 3 LLTHEEEILLGKQVQKLMSLIAIHSSLVDTLDREPTRTEWAAAGGISEAELAAIVTAGEQ 62
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K +M+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD SKG++FSTYA+WW
Sbjct: 63 AKHRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPSKGYRFSTYAYWW 122
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++SRTIRLP H+ E ++K+A++Q ++GR P E+A+ATG ++K++
Sbjct: 123 IRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQFTQQHGRTPTASEIAQATGFTIKQV 182
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD K+G NQ+
Sbjct: 183 REYLDRSRQPLSLDLKVGDNQD 204
>gi|162458769|ref|NP_001105507.1| sigma-like factor6 [Zea mays]
gi|4336610|gb|AAD17856.1| sigma factor SIG6 [Zea mays]
Length = 541
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 102/285 (35%), Positives = 162/285 (56%), Gaps = 13/285 (4%)
Query: 138 QPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGST 197
QP +S D P H + +RS R ER++++ +A N ++ SG
Sbjct: 165 QPHRRSVD--PNHS---------YDQVFIRSTRLLERRSKKRNGGHRALDNGVAC-SGVN 212
Query: 198 SRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG 257
S+RK + + + R ++ LTA EE Q+ + IQ+L+KLEG + L +CG
Sbjct: 213 SKRKDKFGRVLIQTSLFRLFLRDRETTEFLTAKEEKQMFSQIQNLMKLEGAQRNLQAQCG 272
Query: 258 GSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
PT +WA A G+ REL+ + G C++KM SN RLVI +A+ Y+G G+++QDLVQ
Sbjct: 273 REPTVEEWAQAVGMSCRELQSCVRTGRRCREKMARSNFRLVIHVARKYEGCGLDIQDLVQ 332
Query: 318 EGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEA 377
+GC GL++ EKF+ SKG +F TYA+WWI+Q+++KS+ SR IRLP + +V +A
Sbjct: 333 DGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQSIKKSIFKNSRLIRLPESVYALLRKVGKA 392
Query: 378 RKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKI 422
R + +G P NE VA G+++++L + + RS+ ++
Sbjct: 393 RMECIM-DGEQPTNEVVARRAGITIEKLAKLRAKTRKVRSMQDRV 436
>gi|37522141|ref|NP_925518.1| RNA polymerase sigma factor RpoD [Gloeobacter violaceus PCC 7421]
gi|35213141|dbj|BAC90513.1| principal RNA polymerase sigma factor [Gloeobacter violaceus PCC
7421]
Length = 400
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 100/249 (40%), Positives = 138/249 (55%), Gaps = 37/249 (14%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPT---------- 261
D +R RLL A+EE++L+ I DLL LE LR R G + T
Sbjct: 61 DSIRVYLQEIGRIRLLRADEEIELARQIADLLTLERLRA----RMGAAGTDMHSDVADLL 116
Query: 262 -----------------------FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLV 298
+WA AAG+ + R R+ YG KDKM+ SN+RLV
Sbjct: 117 GDDDLLTENLLASGDQVTESEQELRRWAEAAGIAYEQFRDRIAYGRRAKDKMVQSNLRLV 176
Query: 299 ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 358
+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQS
Sbjct: 177 VSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQS 236
Query: 359 RTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSL 418
RTIRLP H+ E R+K+ K L E GR P EE+A +++++L + S + P SL
Sbjct: 237 RTIRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISL 296
Query: 419 DQKIGINQN 427
+ IG ++
Sbjct: 297 ETPIGKEED 305
>gi|359462714|ref|ZP_09251277.1| RNA polymerase sigma factor [Acaryochloris sp. CCMEE 5410]
Length = 331
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 136/217 (62%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SD +R S LLT +E+QL +Q +++LE +++ L++ CG P+ W AA
Sbjct: 21 SDNVRLYLRDIGRSPLLTPEQELQLGREVQTMVRLEAVKDQLAQSCGEEPSMETWTKAAD 80
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
++ EL+ L G K KMIT+N+RLV++IAK Y+ + L DL+QEG GL R AEK+
Sbjct: 81 LEIAELQTLLEKGHKAKQKMITANLRLVVTIAKKYRDRNLELLDLIQEGTLGLERAAEKY 140
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +GF+FSTYA+WWI+Q + +++++Q RTIRLP H+ EA ++K +++L GR P
Sbjct: 141 DPQRGFRFSTYAYWWIRQGITRAIAEQGRTIRLPIHLTEALNKIKRTQRELSQSLGRSPT 200
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
EVA+A L+ +++ L S+D KIG +Q+
Sbjct: 201 TAEVAQALSLTPEKVQQYLHCAHHTLSIDLKIGDDQD 237
>gi|33239946|ref|NP_874888.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33237472|gb|AAP99540.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
Length = 438
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/212 (45%), Positives = 132/212 (62%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L G PT +WAA +
Sbjct: 128 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAIQFESEHGNYPTKKEWAALVNM 187
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
RRRL K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 188 PMARFRRRLMLARRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 247
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P+
Sbjct: 248 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSE 307
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
EE+AE+ +++++L + S + P SL+ IG
Sbjct: 308 EEIAESMEMTIEKLRFIAKSAQLPISLETPIG 339
>gi|357440353|ref|XP_003590454.1| RNA polymerase sigma factor [Medicago truncatula]
gi|355479502|gb|AES60705.1| RNA polymerase sigma factor [Medicago truncatula]
Length = 567
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 99/264 (37%), Positives = 160/264 (60%), Gaps = 7/264 (2%)
Query: 166 VRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQE-----VDYSDPLRYLRAT 220
VRS R ER+A+ + + + + G + ++ VQ+ ++ SDPL +
Sbjct: 202 VRSTRLRERRAKERKVPKLKVKDKETYLDGKDAAEEKLQVQKKISKGMNQSDPLNKFLQS 261
Query: 221 TSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRL 280
S +LLT+ +E QL IQ+LL+LE L+ L + G PT A+WA AG++ R+++ +L
Sbjct: 262 PESKQLLTSEQESQLVVQIQELLRLEDLKTSLQSQFGREPTMAEWAEGAGLNCRKMKAQL 321
Query: 281 NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 340
G ++K+I +N+RLV IAK+YQG G++++DL+QEG GL++ +KF G +F++
Sbjct: 322 RCGNRSREKLIQANLRLVHYIAKSYQGRGLSIEDLLQEGSTGLIKSIKKFKTQAGCRFAS 381
Query: 341 YAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR-HPNNEEVAEATG 399
YA+WWIKQA+RK++ + SRTIRLP + +V EA+K LY E G +P EE+A G
Sbjct: 382 YAYWWIKQAIRKAIYNHSRTIRLPEKVYNKLSKVLEAKK-LYKEEGNLNPTKEELARRVG 440
Query: 400 LSMKRLHAVLLSPKAPRSLDQKIG 423
+S ++ +L + P S+ +G
Sbjct: 441 ISPDKVDRLLFVARIPISMQNTVG 464
>gi|428223283|ref|YP_007107453.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
gi|427996623|gb|AFY75318.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
Length = 393
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 101/252 (40%), Positives = 148/252 (58%), Gaps = 9/252 (3%)
Query: 181 AAEKAAANVMSVKSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAG 238
A E V + G +T++ K+ E D +R RLL A+EE++L+
Sbjct: 51 AVEGEGGKVTKARRGRKATAQTKKKHYTE----DSIRLYLQEIGRIRLLRADEEIELARK 106
Query: 239 IQDLLKLEGLREVLSER--CG-GSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNI 295
I DLL+LE + L+E+ C WA + + + RL+ G KDKM+ SN+
Sbjct: 107 IADLLQLEDKQRELAEQHDCDLEDVNLEDWAVEMDMPLDKFKNRLHSGRRAKDKMVQSNL 166
Query: 296 RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 355
RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++
Sbjct: 167 RLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIA 226
Query: 356 DQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAP 415
DQSRTIRLP H+ E R+K+ K L E GR P+ EE+A +++++L + S + P
Sbjct: 227 DQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPSEEEIATRMEMTIEKLRFIAKSAQLP 286
Query: 416 RSLDQKIGINQN 427
SL+ IG ++
Sbjct: 287 ISLETPIGKEED 298
>gi|254424042|ref|ZP_05037760.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196191531|gb|EDX86495.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 319
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 136/213 (63%), Gaps = 1/213 (0%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 274
RYL+ LLT +E+ L +Q L+KLE +R+ L+E PT A+WA A +
Sbjct: 13 RYLKGIGRFP-LLTHEQEITLGKTVQQLMKLEAIRDDLTETMDREPTLAEWAEATNLSPE 71
Query: 275 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASK 334
L++ + G KDKM+ SN+RLV+SIAK Y+G+ +++ DL+QEG GL RG EKFD K
Sbjct: 72 ALKKTVEIGQQAKDKMMRSNLRLVVSIAKKYRGSKLDMMDLIQEGSLGLCRGVEKFDPLK 131
Query: 335 GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEV 394
G++FSTYA+WWI+QA+ ++++D RTIRLP H+ E ++++A++++ E GR EV
Sbjct: 132 GYRFSTYAYWWIRQAITRAIADTGRTIRLPIHINEKLSKIRKAQREVSLELGRPATVSEV 191
Query: 395 AEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
AE L +++ + + P SL+ +IG QN
Sbjct: 192 AEKVSLPAEKVRELQRQSRLPLSLNMRIGSEQN 224
>gi|255556952|ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223541372|gb|EEF42923.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
Length = 548
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 103/284 (36%), Positives = 160/284 (56%), Gaps = 5/284 (1%)
Query: 143 SADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKR 202
S LEPT LEE + VRS R+ ER+++ R + S +K+
Sbjct: 170 STGLEPTDLSNFSLEEVKT----VRSTRRLERQSKNRRVTKTKEIFHEPYSSRRAGVQKK 225
Query: 203 PSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTF 262
+ + D DPLR + +LLTA EE +L +QDL+ LE ++E + G PT
Sbjct: 226 IN-EGFDPKDPLRLFLWGPETKQLLTAKEESELIGQVQDLMSLENVKEKFKLQFGRDPTL 284
Query: 263 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 322
+WA A G+ ++ +L+ G ++K+I +N+R+V+ IAK YQG G++LQDL+QEG G
Sbjct: 285 VEWADAVGLSYSVMQSQLHSGNRSREKLINANLRMVVHIAKQYQGRGLSLQDLLQEGSMG 344
Query: 323 LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLY 382
L++ EKF G +F+TYA+WWI+Q VRK++ SRTIRLP ++ +V EA++
Sbjct: 345 LMKSIEKFKPQVGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYHTLGKVSEAKRSYI 404
Query: 383 SENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQ 426
E +P EE+A+ G++ RL +L + P S+ Q + +Q
Sbjct: 405 MEGNHNPTKEELAKRIGITTVRLERLLYMARMPLSMQQTVWADQ 448
>gi|172035791|ref|YP_001802292.1| RNA polymerase sigma factor RpoD [Cyanothece sp. ATCC 51142]
gi|354555027|ref|ZP_08974330.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171697245|gb|ACB50226.1| group 1 sigma-70 RNA polymerase sigma factor A [Cyanothece sp. ATCC
51142]
gi|353553181|gb|EHC22574.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 416
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 106/289 (36%), Positives = 148/289 (51%), Gaps = 46/289 (15%)
Query: 185 AAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLK 244
A + S SRR+ PS ++ D +R RLL A EE++L+ I DLL+
Sbjct: 33 AETETKKTRKISASRRRDPSKKKPYTEDSIRVYLQEIGRIRLLRAEEEIELARKIADLLQ 92
Query: 245 LEGLREVLSERCGGSPTFAQWA----------------AAAGVDQR-------------- 274
LE +RE L E PT QW +A D +
Sbjct: 93 LERIREALWEELDQEPTDEQWGKRIFQWENIEQMLRAQSAKDKDPKWSEVTTMLQQADII 152
Query: 275 ----------------ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQE 318
+ +RRL G KDKM+ SN+RLV+SIAK Y G++ QDL+QE
Sbjct: 153 SDLEKTWKLESKAYLPKFKRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQE 212
Query: 319 GCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEAR 378
G GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+
Sbjct: 213 GSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTT 272
Query: 379 KQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
K L E R P EE+A +++++L + S + P SL+ IG ++
Sbjct: 273 KLLSQEMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED 321
>gi|67921267|ref|ZP_00514786.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|416403884|ref|ZP_11687612.1| Group 2 RNA polymerase sigma factor @ RNA polymerase sigma factor
RpoD [Crocosphaera watsonii WH 0003]
gi|67857384|gb|EAM52624.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|357261629|gb|EHJ10875.1| Group 2 RNA polymerase sigma factor @ RNA polymerase sigma factor
RpoD [Crocosphaera watsonii WH 0003]
Length = 414
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 104/276 (37%), Positives = 145/276 (52%), Gaps = 44/276 (15%)
Query: 196 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 255
S SRR+ PS ++ D +R RLL A EE++L+ I DLL+LE +RE L E
Sbjct: 44 SASRRRDPSKKKPYTEDSIRVYLQEIGRIRLLRAEEEIELARKIADLLQLERIREALWEE 103
Query: 256 CGGSPTFAQWAAA----AGVDQR------------------------------------- 274
P QW ++QR
Sbjct: 104 LDQEPNDDQWGHRIFQWENIEQRLCSQKNKEPKWSDIVAELNKAEIISDLEKTWKQQSKA 163
Query: 275 ---ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+ +RRL G KDKM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 164 YLPKFKRRLYLGRRAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 223
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E R P
Sbjct: 224 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTE 283
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
EE+A +++++L + S + P SL+ IG ++
Sbjct: 284 EEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED 319
>gi|428779237|ref|YP_007171023.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
gi|428693516|gb|AFZ49666.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
Length = 388
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 97/216 (44%), Positives = 134/216 (62%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL A+EE++L+ I DL +LE R L G PT +WA G
Sbjct: 77 DSIRLYLQEIGRIRLLRADEEIELARKIADLSELERTRTELEATIGCEPTDEEWAEEVGQ 136
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 137 ALPKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 196
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E R P
Sbjct: 197 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQELARKPTE 256
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
EE+AE +++++L + S + P SL+ IG ++
Sbjct: 257 EEIAERMEMTIEKLRFIAKSAQLPISLETPIGKEED 292
>gi|87123878|ref|ZP_01079728.1| Sigma-70 factor [Synechococcus sp. RS9917]
gi|86168447|gb|EAQ69704.1| Sigma-70 factor [Synechococcus sp. RS9917]
Length = 456
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 134/216 (62%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 146 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLLLEELAAQFESDNGREPDTKEWAALVEM 205
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 206 PVIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 265
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 266 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 325
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
EE+AE+ +++++L + S + P SL+ IG ++
Sbjct: 326 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED 361
>gi|116075287|ref|ZP_01472547.1| RNA polymerase sigma factor [Synechococcus sp. RS9916]
gi|116067484|gb|EAU73238.1| RNA polymerase sigma factor [Synechococcus sp. RS9916]
Length = 479
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 134/216 (62%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 169 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLLLEELAAQFESDNGREPDTKEWAALVEM 228
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 229 PLIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 288
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 289 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 348
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
EE+AE+ +++++L + S + P SL+ IG ++
Sbjct: 349 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED 384
>gi|209527735|ref|ZP_03276230.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|209491813|gb|EDZ92173.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
Length = 332
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 85/202 (42%), Positives = 130/202 (64%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q ++ L +R+ L++ PT A+W+A AG+ + E+ +N G
Sbjct: 37 LLTREEEIIYGKKVQQMMSLLEMRDELTKELDHDPTAAEWSAKAGLSESEMTEIMNRGRR 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV+SIAK YQ M DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 97 AKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 156
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ SRTIRLP H+ E ++K +++L+ + GR+ E+A+A L ++
Sbjct: 157 IRQAITRAIAQNSRTIRLPIHITEKLNKIKRVQRELFQQYGRNATPTEIAKALDLEPSQI 216
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
LL+ + P SLD ++G NQ+
Sbjct: 217 RDYLLASRHPVSLDLRVGDNQD 238
>gi|284929771|ref|YP_003422293.1| RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma
factor, cyanobacterial RpoD-like family [cyanobacterium
UCYN-A]
gi|284810215|gb|ADB95912.1| RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma
factor, cyanobacterial RpoD-like family [cyanobacterium
UCYN-A]
Length = 318
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 138/217 (63%), Gaps = 2/217 (0%)
Query: 212 DPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
DP+R YLR LLT EE+ + +Q + LE RE+ ++ G PT QWA AA
Sbjct: 9 DPVRSYLREIGRVP-LLTHEEEILYAKRVQRFVDLEKYRELFTKETGKEPTETQWAQAAR 67
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
+ +REL + G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKF
Sbjct: 68 ISRRELHSAIASGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KG++FSTYA+WWI+QA+ ++++++SRTIRLP H+ E ++K+A+++L GR
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRELSQARGRDAT 187
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
E+AE L+ K++ L + P SLD ++G NQ+
Sbjct: 188 IAELAEELDLTPKQVREYLERARQPLSLDLRVGDNQD 224
>gi|427735326|ref|YP_007054870.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427370367|gb|AFY54323.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 332
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 86/202 (42%), Positives = 128/202 (63%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT+ EE+ L+ +Q + L L+E LSE+ PT +W+ A ++ EL ++N G +
Sbjct: 35 LLTSEEEIFLAKQVQQRISLLALKEELSEKLQRQPTLQEWSVKAQLNDSELLEQINQGQI 94
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ ++ DL+QEG GL R +KF S G+KFSTYA+WW
Sbjct: 95 AKQKMIAANLRLVVTIAKKYQKRNLDFPDLIQEGTLGLERAVDKFKPSLGYKFSTYAYWW 154
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q + +++S QSRTIRLP H+ E ++K +++L + GR+P E+AEA G ++
Sbjct: 155 IRQGITRAISQQSRTIRLPIHITEKLNKIKRVQRELSQKLGRNPTVTEIAEALGFKPSQI 214
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD K+G QN
Sbjct: 215 RECLRLARKPMSLDVKVGTEQN 236
>gi|126659335|ref|ZP_01730471.1| RNA polymerase sigma factor SigD [Cyanothece sp. CCY0110]
gi|126619417|gb|EAZ90150.1| RNA polymerase sigma factor SigD [Cyanothece sp. CCY0110]
Length = 318
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 137/216 (63%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
DP+R LLT EE+ + +Q L+ LE LR+ + E G PT QWA A +
Sbjct: 9 DPVRAYLKEIGRVPLLTHEEEILYAKRVQRLVNLEKLRDDIIEETGQEPTEIQWAKTAKI 68
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
++EL+ + G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD
Sbjct: 69 SRKELQSIIEIGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFD 128
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
+KG++FSTYA+WWI+QA+ ++++++SRTIRLP H+ E ++K+A+++L + GR
Sbjct: 129 PTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRELSQQKGRAATV 188
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
E+AE L+ K++ L + P SLD ++G NQ+
Sbjct: 189 VELAEELDLTPKQVREYLERARQPLSLDLRVGDNQD 224
>gi|376003181|ref|ZP_09780996.1| group 2 RNA polymerase sigma factor sigB (RpoD family) [Arthrospira
sp. PCC 8005]
gi|375328506|emb|CCE16749.1| group 2 RNA polymerase sigma factor sigB (RpoD family) [Arthrospira
sp. PCC 8005]
Length = 332
Score = 181 bits (459), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 85/202 (42%), Positives = 131/202 (64%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q ++ L +R+ L++ PT A+W+A AG+ + E+ +N G
Sbjct: 37 LLTREEEIIYGKKVQQMMSLLEMRDELTKELDRDPTAAEWSAKAGLSESEMTEIMNRGRR 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV+SIAK YQ M DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 97 AKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 156
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ SRTIRLP H+ E ++K+ +++L+ + GR+ E+A+A L ++
Sbjct: 157 IRQAITRAIAQNSRTIRLPIHITEKLNKIKKVQRELFQQYGRNATPTEIAKALDLEPSQI 216
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
LL+ + P SLD ++G NQ+
Sbjct: 217 RDYLLASRHPVSLDLRVGDNQD 238
>gi|87302644|ref|ZP_01085461.1| RNA polymerase sigma factor [Synechococcus sp. WH 5701]
gi|87282988|gb|EAQ74945.1| RNA polymerase sigma factor [Synechococcus sp. WH 5701]
Length = 469
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 134/216 (62%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L + G P +WA +
Sbjct: 159 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLLLEELAGQFEQDNGHYPDNKEWAVLVDM 218
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 219 PPVKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 278
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Sbjct: 279 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTE 338
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
EE+AE+ +++++L + S + P SL+ IG ++
Sbjct: 339 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED 374
>gi|123965795|ref|YP_001010876.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9515]
gi|123200161|gb|ABM71769.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9515]
Length = 397
Score = 181 bits (458), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 95/212 (44%), Positives = 134/212 (63%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL+LE L G P+ +WA +
Sbjct: 87 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQFESEKGHFPSVREWAELIDM 146
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 147 PLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 206
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P+
Sbjct: 207 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSE 266
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
EE+AE+ +++++L + S + P SL+ IG
Sbjct: 267 EEIAESMEMTIEKLRFIAKSAQLPISLETPIG 298
>gi|126659035|ref|ZP_01730176.1| RNA polymerase sigma factor RpoD [Cyanothece sp. CCY0110]
gi|126619692|gb|EAZ90420.1| RNA polymerase sigma factor RpoD [Cyanothece sp. CCY0110]
Length = 416
Score = 181 bits (458), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 105/289 (36%), Positives = 148/289 (51%), Gaps = 46/289 (15%)
Query: 185 AAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLK 244
A A+ + + SRR+ P ++ D +R RLL A EE++L+ I DLL+
Sbjct: 33 AEADGKKTRKITASRRRDPGKKKPYTEDSIRVYLQEIGRIRLLRAEEEIELARKIADLLQ 92
Query: 245 LEGLREVLSERCGGSPTFAQWAA-------------AAGVDQRE---------------- 275
LE +RE L E PT QW A ++E
Sbjct: 93 LERIREALWEELDQEPTDEQWGKRIFQWENIEQMLRAQSSKEKEPKWSEVTDMLQKAEII 152
Query: 276 -----------------LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQE 318
+RRL G KDKM+ SN+RLV+SIAK Y G++ QDL+QE
Sbjct: 153 SDLEKTWKLESKAYLPKFKRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQE 212
Query: 319 GCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEAR 378
G GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+
Sbjct: 213 GSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTT 272
Query: 379 KQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
K L E R P EE+A +++++L + S + P SL+ IG ++
Sbjct: 273 KLLSQEMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED 321
>gi|86607034|ref|YP_475797.1| RNA polymerase sigma factor RpoD [Synechococcus sp. JA-3-3Ab]
gi|86555576|gb|ABD00534.1| RNA polymerase sigma factor RpoD [Synechococcus sp. JA-3-3Ab]
Length = 404
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 138/222 (62%), Gaps = 5/222 (2%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG--GSPTFAQ---W 265
D +R RLL A+EE++L+ I DLL+LE RE + +R G P W
Sbjct: 88 DDSIRVYLQEIGRIRLLRADEEIELARKIADLLELERAREAVFQRMGLWSDPEEVPETLW 147
Query: 266 AAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 325
A + E RRRL+ G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R
Sbjct: 148 AEEVKMSLPEFRRRLHRGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 207
Query: 326 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSEN 385
AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ KQL E
Sbjct: 208 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKVTKQLSQEL 267
Query: 386 GRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
GR P EE+A +++++L + S + P SL+ IG ++
Sbjct: 268 GRRPTEEEIATRMEITIEKLRFIAKSAQLPISLETPIGKEED 309
>gi|218441429|ref|YP_002379758.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 7424]
gi|218174157|gb|ACK72890.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 318
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 88/218 (40%), Positives = 142/218 (65%), Gaps = 2/218 (0%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP+R YLR LLT EE+ L+ +Q + L+ +++ L++ P ++WA+AA
Sbjct: 8 TDPVRAYLREIGRVP-LLTHEEEIVLAKRVQRFMALQDIKDALTQTLKREPQDSEWASAA 66
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
+ + EL R + G K+KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EK
Sbjct: 67 KITEEELHRAIAAGKAAKEKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEK 126
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
FD +KG++FSTYA+WWI+QA+ ++++++SRTIRLP H+ E ++K+A++QL GR
Sbjct: 127 FDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQAKGRAA 186
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
E+AE L+ +++ L + P SLD K+G NQ+
Sbjct: 187 TISELAEELELTPRQVRDYLERARQPLSLDLKVGDNQD 224
>gi|160331013|ref|XP_001712214.1| rpoD [Hemiselmis andersenii]
gi|159765661|gb|ABW97889.1| rpoD [Hemiselmis andersenii]
Length = 485
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 92/210 (43%), Positives = 134/210 (63%), Gaps = 1/210 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R+ RLL EE+QL+ I LL E ++ L E+ PT ++W AA V
Sbjct: 130 DSVRWYLQLIGRVRLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKV 189
Query: 272 -DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
D ++ R L+ K++M+ +N+RLV+SIAK Y GM+LQDL+QEG GL+R AEKF
Sbjct: 190 SDVKKFRAILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKF 249
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D+ KGFKFSTYA WW+KQAV ++++D SRTIRLP H+ + +++ + L E GR P
Sbjct: 250 DSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPT 309
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQ 420
EE+AE +S+++L +VL S + SL++
Sbjct: 310 EEEIAEKMDMSVEKLRSVLQSAQPTLSLER 339
>gi|33861053|ref|NP_892614.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33639785|emb|CAE18955.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
Length = 396
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 136/216 (62%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL+LE L G P+ +WA +
Sbjct: 86 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELTDM 145
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 146 PLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 205
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P+
Sbjct: 206 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSE 265
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
EE+AE+ +++++L + S + P SL+ IG ++
Sbjct: 266 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED 301
>gi|78778882|ref|YP_396994.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9312]
gi|78712381|gb|ABB49558.1| Sigma-70 factor [Prochlorococcus marinus str. MIT 9312]
Length = 393
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/212 (44%), Positives = 134/212 (63%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL+LE L G P+ +WA +
Sbjct: 83 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDM 142
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 143 PLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 202
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P+
Sbjct: 203 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSE 262
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
EE+AE+ +++++L + S + P SL+ IG
Sbjct: 263 EEIAESMEMTIEKLRFIAKSAQLPISLETPIG 294
>gi|126695861|ref|YP_001090747.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9301]
gi|126542904|gb|ABO17146.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9301]
Length = 394
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 136/216 (62%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL+LE L G P+ +WA +
Sbjct: 84 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDM 143
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 144 PLPKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 203
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P+
Sbjct: 204 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSE 263
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
EE+AE+ +++++L + S + P SL+ IG ++
Sbjct: 264 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED 299
>gi|254525463|ref|ZP_05137515.1| sigma-70 factor [Prochlorococcus marinus str. MIT 9202]
gi|221536887|gb|EEE39340.1| sigma-70 factor [Prochlorococcus marinus str. MIT 9202]
Length = 393
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/212 (44%), Positives = 134/212 (63%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL+LE L G P+ +WA +
Sbjct: 83 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDM 142
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 143 PLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 202
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P+
Sbjct: 203 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSE 262
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
EE+AE+ +++++L + S + P SL+ IG
Sbjct: 263 EEIAESMEMTIEKLRFIAKSAQLPISLETPIG 294
>gi|428217032|ref|YP_007101497.1| RpoD subfamily RNA polymerase sigma-70 subunit [Pseudanabaena sp.
PCC 7367]
gi|427988814|gb|AFY69069.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena sp.
PCC 7367]
Length = 346
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 101/249 (40%), Positives = 146/249 (58%), Gaps = 9/249 (3%)
Query: 184 KAAANVMSVKSGSTSRRK-----RPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAG 238
+A A V S +T R RP V +D +R LLT+ EE+
Sbjct: 8 QAKAGVRSATGSATERSADKGVARPGVS----ADMVRTYLHEIGKIPLLTSEEEIIFGKR 63
Query: 239 IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLV 298
+Q L++L L E L+E+ PT A+WA AG++ EL + + G K KMI +N+RLV
Sbjct: 64 VQQLMRLSELYEDLAEQLDRQPTQAEWADKAGLNIEELEQIVRDGTRSKRKMIEANLRLV 123
Query: 299 ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 358
+S+AK YQ + L DLVQEG GL R +KFD +KGFKFSTYA+WWI+QA+ ++++ Q+
Sbjct: 124 VSVAKKYQKRNLELLDLVQEGTLGLERAVDKFDPTKGFKFSTYAYWWIRQAITRAIAQQA 183
Query: 359 RTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSL 418
RTIRLP H+ E ++K+A++QL GR E+A+A L +++ L + P SL
Sbjct: 184 RTIRLPVHITEKLNKIKKAQRQLSQSLGRVATAAEIADALKLKPEQVREFLSMARQPVSL 243
Query: 419 DQKIGINQN 427
D +IG NQ+
Sbjct: 244 DLRIGDNQD 252
>gi|157412913|ref|YP_001483779.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9215]
gi|157387488|gb|ABV50193.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9215]
Length = 393
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 136/216 (62%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL+LE L G P+ +WA +
Sbjct: 83 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDM 142
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 143 PLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 202
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P+
Sbjct: 203 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSE 262
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
EE+AE+ +++++L + S + P SL+ IG ++
Sbjct: 263 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED 298
>gi|427703469|ref|YP_007046691.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
gi|427346637|gb|AFY29350.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
Length = 356
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 88/203 (43%), Positives = 136/203 (66%), Gaps = 1/203 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGS-PTFAQWAAAAGVDQRELRRRLNYGI 284
LL+ +E+ L +Q+L+ LE LRE L R GG+ P+ + AAAAG+ LR+RL+ G
Sbjct: 60 LLSHEQEITLGRQVQELMALEELREELKMRAGGTDPSQQELAAAAGLRPEVLRKRLHAGR 119
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+W
Sbjct: 120 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 179
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+Q + ++++++SRTIRLP H+ E ++K+ +++L E GR P E+A A L +
Sbjct: 180 WIRQGITRAIAEKSRTIRLPIHITETLNKLKKGQRELSQELGRTPTLSELAVAVELPEEE 239
Query: 405 LHAVLLSPKAPRSLDQKIGINQN 427
+ +L + P SL+ K+G ++
Sbjct: 240 VKDLLCRARQPVSLETKVGDGED 262
>gi|123968088|ref|YP_001008946.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
AS9601]
gi|123198198|gb|ABM69839.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. AS9601]
Length = 394
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 136/216 (62%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL+LE L G P+ +WA +
Sbjct: 84 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDM 143
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 144 PLAKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 203
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P+
Sbjct: 204 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSE 263
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
EE+AE+ +++++L + S + P SL+ IG ++
Sbjct: 264 EEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEED 299
>gi|423067023|ref|ZP_17055813.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|406711309|gb|EKD06510.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 394
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 85/202 (42%), Positives = 130/202 (64%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q ++ L +R+ L++ PT A+W+A AG+ + E+ +N G
Sbjct: 99 LLTREEEIIYGKKVQQMMSLLEMRDELTKELDHDPTAAEWSAKAGLSESEMTEIMNRGRR 158
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV+SIAK YQ M DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 159 AKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 218
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ SRTIRLP H+ E ++K +++L+ + GR+ E+A+A L ++
Sbjct: 219 IRQAITRAIAQNSRTIRLPIHITEKLNKIKRVQRELFQQYGRNATPTEIAKALDLEPSQI 278
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
LL+ + P SLD ++G NQ+
Sbjct: 279 RDYLLASRHPVSLDLRVGDNQD 300
>gi|115475493|ref|NP_001061343.1| Os08g0242800 [Oryza sativa Japonica Group]
gi|30698490|dbj|BAC76602.1| Sig6 [Oryza sativa Japonica Group]
gi|40253642|dbj|BAD05586.1| Sig6, plastid RNA polymerase sigma factor [Oryza sativa Japonica
Group]
gi|40253689|dbj|BAD05631.1| Sig6, plastid RNA polymerase sigma factor [Oryza sativa Japonica
Group]
gi|113623312|dbj|BAF23257.1| Os08g0242800 [Oryza sativa Japonica Group]
gi|215712228|dbj|BAG94355.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 572
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 100/281 (35%), Positives = 159/281 (56%), Gaps = 7/281 (2%)
Query: 143 SADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANV-MSVKSGSTSRRK 201
S D ++EEL Q + VRS R ER+++R A + A+V S + +
Sbjct: 194 SVDSSKSNEEL-----QSKGQVFVRSTRLLERRSKRRYAPRASIADVSCSADNSKKKEKS 248
Query: 202 RPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPT 261
+ + ++ +P + ++ LTA EE L + IQ L+K+E L +CG PT
Sbjct: 249 KKYGRVLEPDEPFKLFLRDRETTEFLTAKEERHLFSKIQILMKIEEAHRKLEVQCGREPT 308
Query: 262 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCR 321
A+WA A G+ +EL+ + G C++KM SN RLVI +A+ Y+G G+++QDLVQ+GC
Sbjct: 309 LAEWAEAVGMSSKELQSSIRTGRRCREKMARSNFRLVIHVARKYEGYGLDIQDLVQDGCS 368
Query: 322 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL 381
GL++ EKF+ SKG +F TYA+WWI+Q+++KS+ SR IRLP + +V +AR +
Sbjct: 369 GLMKTFEKFNPSKGCRFPTYAYWWIRQSIKKSIFKNSRLIRLPESVYALLRKVGKARMEC 428
Query: 382 YSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKI 422
E G P N VA G+++++L + + PRS+ +
Sbjct: 429 IME-GEQPTNANVARRAGITIEKLAKLRAKTRKPRSMQDHV 468
>gi|253761922|ref|XP_002489335.1| hypothetical protein SORBIDRAFT_0010s016080 [Sorghum bicolor]
gi|241946983|gb|EES20128.1| hypothetical protein SORBIDRAFT_0010s016080 [Sorghum bicolor]
Length = 238
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 85/134 (63%), Positives = 108/134 (80%)
Query: 290 MITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQA 349
M+TSN+RLVISIA+ ++G GM+L DL+QEG +GL+RGAEKFDASKGF+FSTY+HWWIKQA
Sbjct: 1 MVTSNVRLVISIAREFEGPGMDLYDLIQEGMQGLIRGAEKFDASKGFRFSTYSHWWIKQA 60
Query: 350 VRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVL 409
+RKS+S+QS+ RLP HMVEA+YRVKE K+L + R P NEE+A TG+ +KR+ A +
Sbjct: 61 MRKSVSEQSQIFRLPAHMVEASYRVKECTKRLRRKLRRRPTNEEIALDTGMPIKRVEAAV 120
Query: 410 LSPKAPRSLDQKIG 423
PK SLD KIG
Sbjct: 121 NLPKYSVSLDSKIG 134
>gi|399950016|gb|AFP65672.1| RNA-polymerase sigma factor [Chroomonas mesostigmatica CCMP1168]
Length = 485
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 92/210 (43%), Positives = 134/210 (63%), Gaps = 1/210 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R+ RLL EE+QL+ I LL E ++ L E+ PT ++W AA V
Sbjct: 133 DSVRWYLQLIGRVRLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKV 192
Query: 272 -DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
D ++ R L+ K++M+ +N+RLV+SIAK Y GM+LQDL+QEG GL+R AEKF
Sbjct: 193 SDVKKFRAILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKF 252
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D+ KGFKFSTYA WW+KQAV ++++D SRTIRLP H+ + +++ + L E GR P
Sbjct: 253 DSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPT 312
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQ 420
EE+AE +S+++L +VL S + SL++
Sbjct: 313 EEEIAEKMDMSVEKLRSVLQSAQPTLSLER 342
>gi|359460652|ref|ZP_09249215.1| RNA polymerase sigma factor SigD [Acaryochloris sp. CCMEE 5410]
Length = 318
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 84/202 (41%), Positives = 135/202 (66%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +QDL+KL+ +R+ L+E+ P A+W+ AA + + EL++ L+ G
Sbjct: 23 LLTHEEEVTFGKQVQDLIKLQAIRDELAEQLERQPNDAEWSVAAQLSEAELQKALHEGEA 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+ ++QL + GR E+A A L+ K++
Sbjct: 143 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKTQRQLSQKLGRAATISELATALDLTTKQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 203 REYLERARQPLSLDVRVGDNQD 224
>gi|162605994|ref|XP_001713512.1| RNA-polymerase sigma factor [Guillardia theta]
gi|13794432|gb|AAK39807.1|AF165818_15 RNA-polymerase sigma factor [Guillardia theta]
Length = 460
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 139/218 (63%), Gaps = 3/218 (1%)
Query: 204 SVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFA 263
++Q+ D D +R+ RLL +EE+QL+ I LL E ++ L ++ PT +
Sbjct: 107 NIQKAD--DSVRWYLQLIGRVRLLRPDEEIQLAREISQLLHWEHVKISLRDKLRREPTNS 164
Query: 264 QWAAAAGV-DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 322
+W AA V D R+ R L+ K++M+ +N+RLV+SIAK Y GM+LQDL+QEG G
Sbjct: 165 EWTAACKVSDVRKFRSILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLG 224
Query: 323 LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLY 382
L+R AEKFD+ KGFKFSTYA WW+KQAV ++++D SRTIRLP H+ + +++ + L
Sbjct: 225 LIRAAEKFDSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRNLN 284
Query: 383 SENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQ 420
E GR P EE+A+ +S+++L VL S + SL++
Sbjct: 285 IEIGRSPTEEEIAKRMDMSVEKLRNVLQSAQPTLSLER 322
>gi|19910022|dbj|BAB87262.1| RNA polymerase sigma factor [Guillardia theta]
Length = 490
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 92/210 (43%), Positives = 134/210 (63%), Gaps = 1/210 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R+ RLL EE+QL+ I LL E ++ L E+ PT ++W AA V
Sbjct: 130 DSVRWYLQLIGRVRLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKV 189
Query: 272 -DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
D ++ R L+ K++M+ +N+RLV+SIAK Y GM+LQDL+QEG GL+R AEKF
Sbjct: 190 SDVKKFRSILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKF 249
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D+ KGFKFSTYA WW+KQAV ++++D SRTIRLP H+ + +++ + L E GR P
Sbjct: 250 DSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPT 309
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQ 420
EE+AE +S+++L +VL S + SL++
Sbjct: 310 EEEIAEKMDMSVEKLRSVLQSAQPTLSLER 339
>gi|87301677|ref|ZP_01084517.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
gi|87283894|gb|EAQ75848.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
Length = 349
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 97/251 (38%), Positives = 152/251 (60%), Gaps = 7/251 (2%)
Query: 179 TRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLR-YLRATTSSSRLLTANEEMQLSA 237
TR A +A + + + R P V D +R YLR LLT +E+ L
Sbjct: 7 TRPAALQSAPALDSRQAPIAVRTLPPVD----GDLVRSYLR-DIGRVPLLTHEQEITLGR 61
Query: 238 GIQDLLKLEGLREVLSERCGGS-PTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIR 296
+Q+L++LE + L R GG P+ A+WA+AAG+ L+R+L+ G K++M+ +N+R
Sbjct: 62 QVQELMRLEEAEQELEMRAGGQKPSAAEWASAAGLSPALLKRKLSSGRRAKERMVAANLR 121
Query: 297 LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD 356
LV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+WWI+Q + +++++
Sbjct: 122 LVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAE 181
Query: 357 QSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR 416
+SRTIRLP H+ E ++K+ +++L E GR P E+A L + + +L + P
Sbjct: 182 KSRTIRLPIHITETLNKLKKGQRELSQELGRTPTLSELAVCVELPEEEVKDLLCRARQPV 241
Query: 417 SLDQKIGINQN 427
SL+ K+G ++
Sbjct: 242 SLETKVGDGED 252
>gi|307151291|ref|YP_003886675.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306981519|gb|ADN13400.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 318
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 87/218 (39%), Positives = 142/218 (65%), Gaps = 2/218 (0%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP+R YLR LLT EE+ L+ +Q + L+ +++ L++ P +WA AA
Sbjct: 8 TDPVRAYLREIGRVP-LLTHEEEIVLAKRVQRSMALQEIKDTLTKNLSREPLEHEWAEAA 66
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
+ + ELRR + G K+KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EK
Sbjct: 67 KISEEELRRTMAAGKAAKEKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEK 126
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
FD +KG++FSTYA+WWI+QA+ ++++++SRTIRLP H+ E ++K+A++QL + GR
Sbjct: 127 FDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQKQGRAA 186
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
E+A+ L+ +++ L + P SLD ++G NQ+
Sbjct: 187 TISELAQELELTPRQVREYLERARQPLSLDLRVGDNQD 224
>gi|67922139|ref|ZP_00515654.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|67856039|gb|EAM51283.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
Length = 318
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 137/216 (63%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
DP+R LL+ EE+ + +Q L+ LE LRE + + G PT +QWA AA +
Sbjct: 9 DPVRAYLKEIGRVPLLSHEEEILYAKRVQRLINLEKLREEIIQETGKEPTNSQWAKAAKL 68
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
++E + G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD
Sbjct: 69 SRKEFCSVVEAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFD 128
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
+KG++FSTYA+WWI+QA+ ++++++SRTIRLP H+ E ++K+A+++L + GR
Sbjct: 129 PTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRELSQQKGRAATI 188
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
E+AE L+ K++ L + P SLD ++G NQ+
Sbjct: 189 SELAEELDLTPKQVRDYLERSRQPLSLDLRVGDNQD 224
>gi|87303408|ref|ZP_01086196.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
gi|87282056|gb|EAQ74018.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
Length = 330
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 85/203 (41%), Positives = 135/203 (66%), Gaps = 1/203 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGS-PTFAQWAAAAGVDQRELRRRLNYGI 284
LLT +E+ L +Q+L++LE + L R GG P+ A+WA+AAG+ L+R+L+ G
Sbjct: 34 LLTHEQEITLGRQVQELMRLEETEQELEMRAGGQKPSAAEWASAAGLSPALLKRKLSSGR 93
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+W
Sbjct: 94 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 153
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+Q + ++++++SRTIRLP H+ E ++K+ +++L E GR P E+A L +
Sbjct: 154 WIRQGITRAIAEKSRTIRLPIHITETLNKLKKGQRELSQELGRTPTLSELAVCVELPEEE 213
Query: 405 LHAVLLSPKAPRSLDQKIGINQN 427
+ +L + P SL+ K+G ++
Sbjct: 214 VKDLLCRARQPVSLETKVGDGED 236
>gi|416388961|ref|ZP_11685251.1| Cyanobacteria-specific RpoD-like sigma factor, type-2 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
gi|357264325|gb|EHJ13231.1| Cyanobacteria-specific RpoD-like sigma factor, type-2 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
Length = 318
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 137/216 (63%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
DP+R LL+ EE+ + +Q L+ LE LRE + + G PT +QWA AA +
Sbjct: 9 DPVRAYLKEIGRVPLLSHEEEILYAKRVQRLVNLEKLREEIIQETGKEPTNSQWAKAAKL 68
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
++E + G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD
Sbjct: 69 SRKEFCSVVEAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFD 128
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
+KG++FSTYA+WWI+QA+ ++++++SRTIRLP H+ E ++K+A+++L + GR
Sbjct: 129 PTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRELSQQKGRAATI 188
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
E+AE L+ K++ L + P SLD ++G NQ+
Sbjct: 189 SELAEELDLTPKQVRDYLERSRQPLSLDLRVGDNQD 224
>gi|291566702|dbj|BAI88974.1| group 2 RNA polymerase sigma factor SigB [Arthrospira platensis
NIES-39]
Length = 334
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 84/202 (41%), Positives = 129/202 (63%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q ++ L +R+ L++ PT +W+A AG+ + E+ +N G
Sbjct: 39 LLTREEEIIYGKKVQQMMNLLEVRDELTKELDRDPTPEEWSAKAGLSESEMTDIINRGRR 98
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV+SIAK YQ M DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 99 AKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 158
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ SRTIRLP H+ E ++K +++L+ + GR+ E+A+A L ++
Sbjct: 159 IRQAITRAIAQNSRTIRLPIHITEKLNKIKRVQRELFQQYGRNATPTEIAKALDLEPSQI 218
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
LL+ + P SLD ++G NQ+
Sbjct: 219 RDYLLASRHPVSLDLRVGDNQD 240
>gi|409991974|ref|ZP_11275193.1| RNA polymerase sigma factor [Arthrospira platensis str. Paraca]
gi|409937168|gb|EKN78613.1| RNA polymerase sigma factor [Arthrospira platensis str. Paraca]
Length = 332
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 84/202 (41%), Positives = 129/202 (63%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q ++ L +R+ L++ PT +W+A AG+ + E+ +N G
Sbjct: 37 LLTREEEIIYGKKVQQMMNLLEVRDELTKELDRDPTPEEWSAKAGLSESEMTDIINRGRR 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV+SIAK YQ M DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 97 AKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 156
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ SRTIRLP H+ E ++K +++L+ + GR+ E+A+A L ++
Sbjct: 157 IRQAITRAIAQNSRTIRLPIHITEKLNKIKRVQRELFQQYGRNATPTEIAKALDLEPSQI 216
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
LL+ + P SLD ++G NQ+
Sbjct: 217 RDYLLASRHPVSLDLRVGDNQD 238
>gi|225429414|ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
gi|296081598|emb|CBI20603.3| unnamed protein product [Vitis vinifera]
Length = 561
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 162/260 (62%), Gaps = 11/260 (4%)
Query: 164 IAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRK---RPSVQEVDYSDPLRYLRAT 220
+ VRS ++ ERK++R RA EKA N+ + S + RK RPSV V +
Sbjct: 206 VVVRSGKKEERKSKRERALEKAD-NIYAFPLPSKTIRKGPGRPSVSTVKRT-------LN 257
Query: 221 TSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRL 280
+ RL+ A E ++S G++ + LE +R L E G + + WA AAGVD++ L+++L
Sbjct: 258 SRRKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQL 317
Query: 281 NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 340
+G C+D+++ S LV+ IA+NY+G G+ +D++Q G G+++GAE+FD +KG++FST
Sbjct: 318 QFGWYCRDELLRSTHSLVLYIARNYRGMGVAFEDILQAGNLGVLQGAERFDHTKGYRFST 377
Query: 341 YAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGL 400
Y +WI++++ ++ +R +++PF + A ++++ARK LY +GR+P++ E+A+ TGL
Sbjct: 378 YVQYWIRKSMSTLVARHARGVKIPFTLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGL 437
Query: 401 SMKRLHAVLLSPKAPRSLDQ 420
S+ ++ + + S DQ
Sbjct: 438 SLAKIRSAGNCLRVVGSTDQ 457
>gi|81300555|ref|YP_400763.1| group2 RNA polymerase sigma factor SigB [Synechococcus elongatus
PCC 7942]
gi|123556657|sp|Q31ME3.1|RPOD2_SYNE7 RecName: Full=RNA polymerase sigma factor rpoD2
gi|81169436|gb|ABB57776.1| group2 RNA polymerase sigma factor SigB [Synechococcus elongatus
PCC 7942]
Length = 320
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 88/203 (43%), Positives = 130/203 (64%)
Query: 225 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 284
RLLTA EE+ +Q L+ L + L +R G P+ +WAAA ++ +L R++ G
Sbjct: 24 RLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDLNLEDLDRQIEQGQ 83
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K KMI +N+RLV+SIAK YQ M DL+QEG GL RG EKFD SKG+KFSTYA+W
Sbjct: 84 RAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLERGVEKFDPSKGYKFSTYAYW 143
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+QA+ ++++ QSRTIRLP H+ E ++K+ +++L + GR E+AE L +++
Sbjct: 144 WIRQAITRAIAQQSRTIRLPIHITEKLNKLKKTQRELSQQLGRSATASELAEVLELPLEQ 203
Query: 405 LHAVLLSPKAPRSLDQKIGINQN 427
+ + + P SLD K+G +Q+
Sbjct: 204 VREYIQMNRQPVSLDVKVGDSQD 226
>gi|147865632|emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
Length = 611
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 162/260 (62%), Gaps = 11/260 (4%)
Query: 164 IAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRK---RPSVQEVDYSDPLRYLRAT 220
+ VRS ++ ERK++R RA EKA N+ + S + RK RPSV V +
Sbjct: 256 VVVRSGKKEERKSKRERALEKAD-NIYAFPLPSKTIRKGPGRPSVSTVKRT-------LN 307
Query: 221 TSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRL 280
+ RL+ A E ++S G++ + LE +R L E G + + WA AAGVD++ L+++L
Sbjct: 308 SRRKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQL 367
Query: 281 NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 340
+G C+D+++ S LV+ IA+NY+G G+ +D++Q G G+++GAE+FD +KG++FST
Sbjct: 368 QFGWYCRDELLRSTHSLVLYIARNYRGMGVAFEDILQAGNLGVLQGAERFDHTKGYRFST 427
Query: 341 YAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGL 400
Y +WI++++ ++ +R +++PF + A ++++ARK LY +GR+P++ E+A+ TGL
Sbjct: 428 YVQYWIRKSMSTLVARHARGVKIPFTLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGL 487
Query: 401 SMKRLHAVLLSPKAPRSLDQ 420
S+ ++ + + S DQ
Sbjct: 488 SLAKIRSAGNCLRVVGSTDQ 507
>gi|434399420|ref|YP_007133424.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428270517|gb|AFZ36458.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 318
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 84/202 (41%), Positives = 132/202 (65%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ + +Q +K+E ++E L ++ G PT +QWA AA + ELR + G
Sbjct: 23 LLTHEEEILYAKRVQQQIKVEKIKESLQDKLGEEPTESQWADAAEITVEELRNIIQAGEA 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+A++QL + GR E+AE L+ K++
Sbjct: 143 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQQKGRTATISELAEELELTPKQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G N +
Sbjct: 203 REYLEKSRQPISLDVRVGDNND 224
>gi|330040254|ref|XP_003239821.1| RNA-polymerase sigma factor [Cryptomonas paramecium]
gi|327206746|gb|AEA38923.1| RNA-polymerase sigma factor [Cryptomonas paramecium]
Length = 414
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/212 (42%), Positives = 133/212 (62%), Gaps = 1/212 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R+ +LL EE+QL+ I LL+ E ++ L E+ G PT +W+AA +
Sbjct: 84 DSVRWYLQLIGKVKLLKPEEEIQLAREISQLLQWEHIKVFLKEKLGREPTALEWSAACKI 143
Query: 272 -DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
D ++ + L K++MI +N+RLV+SIAK Y GM+LQDLVQEG GL+R EKF
Sbjct: 144 SDVQKFKTVLYNSRKAKERMIAANLRLVVSIAKRYSNRGMSLQDLVQEGSLGLIRATEKF 203
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D+ KGFKFSTYA WWIKQ+V ++++D SRTIRLP H+ + +K+ + L E GR P
Sbjct: 204 DSEKGFKFSTYATWWIKQSVSRAIADHSRTIRLPVHLYDTLSAIKKTTRILTIELGRSPT 263
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKI 422
EE+A +++ +L +VL S + SL++ I
Sbjct: 264 EEEIACKMDVTVDKLRSVLQSAQPTLSLEKPI 295
>gi|2385506|dbj|BAA22190.1| RpoD2 protein [Synechococcus elongatus PCC 7942]
Length = 320
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 88/203 (43%), Positives = 129/203 (63%)
Query: 225 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 284
RLLTA EE+ +Q L+ L + L +R G P+ +WAAA ++ +L R + G
Sbjct: 24 RLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDLNLEDLDREIEQGQ 83
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K KMI +N+RLV+SIAK YQ M DL+QEG GL RG EKFD SKG+KFSTYA+W
Sbjct: 84 RAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLERGVEKFDPSKGYKFSTYAYW 143
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+QA+ ++++ QSRTIRLP H+ E ++K+ +++L + GR E+AE L +++
Sbjct: 144 WIRQAITRAIAQQSRTIRLPIHITEKLNKLKKTQRELSQQLGRSATASELAEVLELPLEQ 203
Query: 405 LHAVLLSPKAPRSLDQKIGINQN 427
+ + + P SLD K+G +Q+
Sbjct: 204 VREYIQMNRQPVSLDVKVGDSQD 226
>gi|56752354|ref|YP_173055.1| group2 RNA polymerase sigma factor RpoD2 [Synechococcus elongatus
PCC 6301]
gi|56687313|dbj|BAD80535.1| group2 RNA polymerase sigma factor RpoD2 [Synechococcus elongatus
PCC 6301]
Length = 320
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 88/203 (43%), Positives = 130/203 (64%)
Query: 225 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 284
RLLTA EE+ +Q L+ L + L +R G P+ +WAAA ++ +L R++ G
Sbjct: 24 RLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDLNLEDLDRQIEQGQ 83
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K KMI +N+RLV+SIAK YQ M DL+QEG GL RG EKFD SKG+KFSTYA+W
Sbjct: 84 RAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLERGFEKFDPSKGYKFSTYAYW 143
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+QA+ ++++ QSRTIRLP H+ E ++K+ +++L + GR E+AE L +++
Sbjct: 144 WIRQAITRAIAQQSRTIRLPIHITEKLNKLKKTQRELSQQLGRSATASELAEVLELPLEQ 203
Query: 405 LHAVLLSPKAPRSLDQKIGINQN 427
+ + + P SLD K+G +Q+
Sbjct: 204 VREYIQMNRQPVSLDVKVGDSQD 226
>gi|86609652|ref|YP_478414.1| RNA polymerase sigma factor RpoD [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86558194|gb|ABD03151.1| RNA polymerase sigma factor RpoD [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 403
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 137/222 (61%), Gaps = 5/222 (2%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG--GSPTFAQ---W 265
D +R RLL A+EE++L+ I DLL+LE RE + +R G P W
Sbjct: 87 DDSIRVYLQEIGRIRLLRADEEIELARKIADLLELERAREAVFQRMGLWSDPEEVPDTLW 146
Query: 266 AAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 325
A + E RRRL+ G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R
Sbjct: 147 AEEVKMSLPEFRRRLHRGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 206
Query: 326 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSEN 385
AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E
Sbjct: 207 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKVTKLLSQEL 266
Query: 386 GRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
GR P EE+A +++++L + S + P SL+ IG ++
Sbjct: 267 GRKPTEEEIATRMEITIEKLRFIAKSAQLPISLETPIGKEED 308
>gi|284928680|ref|YP_003421202.1| hypothetical protein UCYN_00890 [cyanobacterium UCYN-A]
gi|284809139|gb|ADB94844.1| hypothetical protein UCYN_00890 [cyanobacterium UCYN-A]
Length = 420
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 103/274 (37%), Positives = 143/274 (52%), Gaps = 46/274 (16%)
Query: 196 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 255
S SRR+ S ++ D +R RLL A EE++L+ I DLL+LE +RE L E
Sbjct: 48 SASRRRDTSKKKPYTEDSIRVYLQEIGRIRLLRAEEEIELARKIADLLQLERIREALWEE 107
Query: 256 CGGSPTFAQWAAAA------------------------------------------GVDQ 273
P QWA ++Q
Sbjct: 108 LDQVPNDEQWAKRIFQWENIEQIIRTQSSKEKEPKWSEVTSLLQEKKTISNLEKIWELEQ 167
Query: 274 R----ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
+ + +RRL G KDKM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEK
Sbjct: 168 KSYLPKFKRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEK 227
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
FD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E R P
Sbjct: 228 FDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKP 287
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
EE+A +++++L + S + P SL+ IG
Sbjct: 288 TEEEIATRMEMTIEKLRFIAKSAQLPISLETPIG 321
>gi|443476204|ref|ZP_21066122.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
gi|443018873|gb|ELS33055.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
Length = 394
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 137/219 (62%), Gaps = 3/219 (1%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFA---QWAAA 268
D +R RLL A+EE++L+ I DLL+LE RE L+ P +WA
Sbjct: 81 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELELKREELATEADCHPDDVREPEWAIK 140
Query: 269 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 328
G+ E R+RL+ G KDKM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AE
Sbjct: 141 MGMPLGEFRKRLHSGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAE 200
Query: 329 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH 388
KFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR
Sbjct: 201 KFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRK 260
Query: 389 PNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
P EE+A +++++L + S + P SL+ IG ++
Sbjct: 261 PTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEED 299
>gi|428773684|ref|YP_007165472.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428687963|gb|AFZ47823.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 328
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 133/222 (59%)
Query: 206 QEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQW 265
++V+ D +R LL+ +E+ +Q ++ L +E L+E PT +W
Sbjct: 12 KKVNTVDMVRTYLQEIGKVPLLSHEQEIVFGKQVQIMMSLYAQKEELAENLDREPTLEEW 71
Query: 266 AAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 325
A AA EL++ ++ G K KMI +N+RLV++IAK YQ M DL+QEG GL R
Sbjct: 72 AQAAEKTPAELKKLIHQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLER 131
Query: 326 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSEN 385
G EKFD +KGFKFSTYA+WWI+QA+ ++++ Q+RTIRLP H+ E ++K+ +++L +
Sbjct: 132 GVEKFDPTKGFKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQKL 191
Query: 386 GRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
GR PN E+A A L ++ + P SLD K+G NQ+
Sbjct: 192 GRSPNQSEIANALDLEPSQIREYFSIARQPISLDVKVGDNQD 233
>gi|158337052|ref|YP_001518227.1| RNA polymerase sigma factor SigD [Acaryochloris marina MBIC11017]
gi|158307293|gb|ABW28910.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 83/202 (41%), Positives = 135/202 (66%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q L+KL+ +R+ L+E+ P A+W+AAA + + EL++ L+ G
Sbjct: 23 LLTHEEEVTFGKQVQHLIKLQTIRDELAEQLERQPNDAEWSAAAKLSEAELQKALHEGEA 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+ ++QL + GR E+A + L+ K++
Sbjct: 143 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKTQRQLSQKLGRAATISELATSLDLTTKQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 203 REYLERARQPLSLDVRVGDNQD 224
>gi|37523331|ref|NP_926708.1| RNA polymerase sigma factor SigC [Gloeobacter violaceus PCC 7421]
gi|35214335|dbj|BAC91703.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
Length = 362
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 90/204 (44%), Positives = 131/204 (64%), Gaps = 4/204 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL +EE++L+ +Q L+KL L+E L G + QWA AA V EL+R++ G
Sbjct: 63 LLGRDEEVELAQQVQKLMKLTALKESLQTSLGSEYSDEQWAEAAKVGLFELKRQVLAGSR 122
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV+S+AK YQ G+ L DLVQEG GL R EKFD +KG++FSTYA+WW
Sbjct: 123 AKKKMIEANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWW 182
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q + ++++ QSRTIRLP H+ E R+K+ +++L GR P E+AE L M+
Sbjct: 183 IRQGITRAIATQSRTIRLPVHITEKLNRIKKTQRKLSQNLGRTPTISEIAEE--LEMEPA 240
Query: 406 HAVLLSPKAPR--SLDQKIGINQN 427
H L + PR SL+ ++G +++
Sbjct: 241 HVRELMSRVPRSVSLETRVGKDKD 264
>gi|220907092|ref|YP_002482403.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 7425]
gi|219863703|gb|ACL44042.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 318
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 84/202 (41%), Positives = 133/202 (65%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L ++ +RE LS+R G P +WA AA + + EL+ +N G L
Sbjct: 23 LLTHEQEILYGKQVQQLAIVQQVREELSDRLGHEPDLTEWATAAKLSEAELQGVVNRGEL 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+A++QL + GR E+A+ L+ K++
Sbjct: 143 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQQLGRAATIGELAQELELTPKQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 203 REYLERSRQPLSLDVRVGDNQD 224
>gi|119492598|ref|ZP_01623816.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
gi|119453067|gb|EAW34237.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Length = 333
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 91/235 (38%), Positives = 135/235 (57%), Gaps = 4/235 (1%)
Query: 193 KSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL 252
K ST R RP V D +R LLT EE+ +Q ++K ++ L
Sbjct: 9 KDQSTKRNTRPGVS----VDTVRTYLHEIGRVPLLTQEEEIHYGKQVQQMMKQLEEKDKL 64
Query: 253 SERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
+++ P+ +WA + + EL R L+ G K KMI +N+RLV+SIAK YQ M
Sbjct: 65 TKKLEHEPSKTEWANEVELTEDELDRILDCGRRAKQKMIEANLRLVVSIAKKYQKRNMEF 124
Query: 313 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY 372
DL+QEG GL RG EKFD +G+KFSTYA+WW++QA+ ++++ RTIRLP H+ E
Sbjct: 125 LDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWVRQAITRAIAQNGRTIRLPIHITEKLN 184
Query: 373 RVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
++K ++ L + GR+P E+AEA L ++ LL+ + P SLD ++G NQ+
Sbjct: 185 KIKRVQRDLVQKYGRNPTPTEIAEALELEPSQIREYLLASRHPISLDLRVGDNQD 239
>gi|56750866|ref|YP_171567.1| RNA polymerase sigma factor SigD [Synechococcus elongatus PCC 6301]
gi|56685825|dbj|BAD79047.1| group2 RNA polymerase sigma factor RpoD3 [Synechococcus elongatus
PCC 6301]
Length = 326
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 142/223 (63%), Gaps = 3/223 (1%)
Query: 207 EVDYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL-SERCGGSPTFAQ 264
E SD +R YLR LLT EE+ L +Q +KL+ LR+ L SE P+ +
Sbjct: 11 ETPTSDLVRTYLREIGRVP-LLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLE 69
Query: 265 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV 324
WAAAAG+ ELR++ + G K KMI +N+RLV+S+AK Y M+L DL+QEG G+
Sbjct: 70 WAAAAGLSIEELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLKRNMDLLDLIQEGTIGMQ 129
Query: 325 RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSE 384
RG EKFD +KG++FSTYA+WWI+QA+ +++++++RTIRLP H+ E ++K+ ++QL +
Sbjct: 130 RGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKMQRQLSQQ 189
Query: 385 NGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
GR E+A A L+ ++ L + P SLD ++G NQ+
Sbjct: 190 LGRTATLPELAAALDLTPAQVRDYLEKARHPLSLDLRVGDNQD 232
>gi|428772058|ref|YP_007163846.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428686337|gb|AFZ46197.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 318
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 133/202 (65%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ + IQ+L+ LE +E L+++ PT +WA AA + ++ L+ ++ G
Sbjct: 23 LLTQEEEIIYAKHIQELVALEKKKETLAKKLEHEPTLGEWAKAAKISEKNLQIKITQGEK 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K +M+ +N+RLV+SIAK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRRMVEANLRLVVSIAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++SR IRLP H+ E ++++ +++L E GR E+AEA LS +++
Sbjct: 143 IRQAITRAIAEKSRAIRLPLHITEKLNKIRQTQRKLSEEKGRPATIAELAEALELSTEQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD K+G N +
Sbjct: 203 REYLGKARQPLSLDLKVGDNND 224
>gi|81299483|ref|YP_399691.1| RNA polymerase sigma factor SigD [Synechococcus elongatus PCC 7942]
gi|123557285|sp|Q31QG5.1|RPOD3_SYNE7 RecName: Full=RNA polymerase sigma factor rpoD3
gi|81168364|gb|ABB56704.1| group2 RNA polymerase sigma factor SigD [Synechococcus elongatus
PCC 7942]
Length = 320
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 142/223 (63%), Gaps = 3/223 (1%)
Query: 207 EVDYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL-SERCGGSPTFAQ 264
E SD +R YLR LLT EE+ L +Q +KL+ LR+ L SE P+ +
Sbjct: 5 ETPTSDLVRTYLREIGRVP-LLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLE 63
Query: 265 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV 324
WAAAAG+ ELR++ + G K KMI +N+RLV+S+AK Y M+L DL+QEG G+
Sbjct: 64 WAAAAGLSIEELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLKRNMDLLDLIQEGTIGMQ 123
Query: 325 RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSE 384
RG EKFD +KG++FSTYA+WWI+QA+ +++++++RTIRLP H+ E ++K+ ++QL +
Sbjct: 124 RGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKMQRQLSQQ 183
Query: 385 NGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
GR E+A A L+ ++ L + P SLD ++G NQ+
Sbjct: 184 LGRTATLPELAAALDLTPAQVRDYLEKARHPLSLDLRVGDNQD 226
>gi|443327898|ref|ZP_21056505.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442792509|gb|ELS01989.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 318
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 131/202 (64%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ + +Q + L +++ L E+ G PT++QWA A + +EL+ L G
Sbjct: 23 LLTHEEEIHYAKRVQREIALVKIKDSLQEKLGQEPTYSQWAKEAKLSVKELKTTLEAGEA 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+A+++L + GR E+AE L+ K++
Sbjct: 143 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRKLAQQKGRMATIAELAEELELTPKQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD K+G N +
Sbjct: 203 RDYLEKSRQPISLDVKVGDNND 224
>gi|78211648|ref|YP_380427.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CC9605]
gi|78196107|gb|ABB33872.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. CC9605]
Length = 335
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 82/198 (41%), Positives = 129/198 (65%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ L +Q+L+ LE L L + G P+ Q A A+G+ +L+R+L +G
Sbjct: 40 LLTHEQEITLGRQVQELMDLESLESELKSKAGEKPSRDQLAKASGLSSIQLKRKLQHGRR 99
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+WW
Sbjct: 100 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 159
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q + ++++++SRTIRLP H+ E ++K+ +++L E GR P E+AE L +
Sbjct: 160 IRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTELAEFVELPEDDV 219
Query: 406 HAVLLSPKAPRSLDQKIG 423
++ + P SL+ K+G
Sbjct: 220 KDLMCRARQPVSLEMKVG 237
>gi|357113236|ref|XP_003558410.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 564
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 97/288 (33%), Positives = 162/288 (56%), Gaps = 15/288 (5%)
Query: 146 LEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTS------- 198
L+ H KLL + + +RS+R ER++++ A ++ + + ST
Sbjct: 174 LDLNHSYEKLLSKG---QVFIRSKRLLERRSKKRDAPRASSTDALCGVVSSTDALCGVVD 230
Query: 199 ----RRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSE 254
+ + + +D +P + ++ LTA EE QL + +Q+L+KLE + L
Sbjct: 231 TKKKEKSKKYGRVLDPDEPFKLFLRDPETTEFLTAKEEKQLFSEVQNLMKLEEAQRRLEA 290
Query: 255 RCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQD 314
+CG P +WA A G+ ++L+ ++ G C++KM SN RLVI +A+ YQG G++++D
Sbjct: 291 QCGREPAIEEWAKAVGMSCKDLQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGLDIED 350
Query: 315 LVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRV 374
LVQ+GC GL++ EKF+ SKG +F TYA+WWI+QA++KS+ SR IRLP + +V
Sbjct: 351 LVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYALLKKV 410
Query: 375 KEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKI 422
+AR + E G P NE VA G+++++L + + RSL ++
Sbjct: 411 GKARLECILE-GEQPTNENVARRAGITIEKLAKLKAKTRKSRSLQDRV 457
>gi|33864638|ref|NP_896197.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. WH 8102]
gi|33632161|emb|CAE06617.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8102]
Length = 332
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 130/198 (65%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ L +QDL+ +E ++ L R G P+ + A A+G+ +L+R+L +G
Sbjct: 37 LLTHEQEITLGRQVQDLMDIEAMQTELESRDGDKPSRDKLAKASGLTPLQLKRKLQHGRR 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+WW
Sbjct: 97 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 156
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q + ++++++SRTIRLP H+ E ++K+ +++L E GR P E+A+ L +
Sbjct: 157 IRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTITELAQYVELPEDDV 216
Query: 406 HAVLLSPKAPRSLDQKIG 423
++ + P SL+ K+G
Sbjct: 217 KDLMCRARQPVSLEMKVG 234
>gi|254432638|ref|ZP_05046341.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
gi|197627091|gb|EDY39650.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
Length = 335
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 84/203 (41%), Positives = 134/203 (66%), Gaps = 1/203 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGS-PTFAQWAAAAGVDQRELRRRLNYGI 284
LLT +E+ L +Q+L+ LE + + L+ R GG+ P+ A+ A AAG+ L++RL G
Sbjct: 34 LLTHEQEITLGRQVQELMALEEMEQELTMRAGGTAPSAAELAKAAGLSPAVLKKRLQAGR 93
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+W
Sbjct: 94 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 153
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+Q + ++++++SRTIRLP H+ E ++K+ +++L E GR P E+A L +
Sbjct: 154 WIRQGITRAIAEKSRTIRLPIHITETLNKLKKGQRELSQELGRTPTVTELAGYVELPEEE 213
Query: 405 LHAVLLSPKAPRSLDQKIGINQN 427
+ +L + P SL+ K+G ++
Sbjct: 214 VKDLLCRARQPVSLETKVGDGED 236
>gi|254432550|ref|ZP_05046253.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
gi|197627003|gb|EDY39562.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
Length = 319
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 84/203 (41%), Positives = 134/203 (66%), Gaps = 1/203 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGS-PTFAQWAAAAGVDQRELRRRLNYGI 284
LLT +E+ L +Q+L+ LE + + L+ R GG+ P+ A+ A AAG+ L++RL G
Sbjct: 18 LLTHEQEITLGRQVQELMALEEMEQELTMRAGGTAPSAAELAKAAGLSPAVLKKRLQAGR 77
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+W
Sbjct: 78 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 137
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+Q + ++++++SRTIRLP H+ E ++K+ +++L E GR P E+A L +
Sbjct: 138 WIRQGITRAIAEKSRTIRLPIHITETLNKLKKGQRELSQELGRTPTVTELAGYVELPEEE 197
Query: 405 LHAVLLSPKAPRSLDQKIGINQN 427
+ +L + P SL+ K+G ++
Sbjct: 198 VKDLLCRARQPVSLETKVGDGED 220
>gi|113477482|ref|YP_723543.1| RNA polymerase sigma factor SigD [Trichodesmium erythraeum IMS101]
gi|110168530|gb|ABG53070.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 319
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 129/202 (63%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ EE+ +Q L L+ + L+E G PT +WA A + + EL+R + G
Sbjct: 24 LLSHEEEILYGKQVQRLTALQEFNQTLAEALGREPTLLEWAEAKELSKSELQRIIREGER 83
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 84 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 143
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+ ++QL + GR E+AE GL+ K++
Sbjct: 144 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKVQRQLTQQLGRSATTGEIAEELGLTPKQI 203
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 204 RECLERARLPLSLDLRVGDNQD 225
>gi|427416876|ref|ZP_18907059.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425759589|gb|EKV00442.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 328
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 84/202 (41%), Positives = 127/202 (62%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ L +Q L+ L+ ++ L E G +W+ AAG+ + EL +L +G
Sbjct: 32 LLTHEEEIVLGKQVQCLMALQETKDKLDEELGHDANRVEWSQAAGISETELVHQLRHGER 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV+++AK YQ + DL+QEG GL RG EKFD KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAVAKKYQKRNLEFLDLIQEGTLGLERGVEKFDPMKGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ QSRTIRLP H+ E ++K ++ L + GR P+ E+ + L+ +++
Sbjct: 152 IRQAITRAIAQQSRTIRLPIHITEKLNKIKREQRVLAQKLGRSPSVGEIGQELDLTPEQV 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD +IG NQ+
Sbjct: 212 REYLTMSRQPISLDVRIGDNQD 233
>gi|166368188|ref|YP_001660461.1| RNA polymerase sigma factor RpoD [Microcystis aeruginosa NIES-843]
gi|425464857|ref|ZP_18844167.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9809]
gi|166090561|dbj|BAG05269.1| principal RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
gi|389833005|emb|CCI22864.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9809]
Length = 416
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 95/255 (37%), Positives = 138/255 (54%), Gaps = 39/255 (15%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE--------------------- 250
D +R RLL A EE++L+ I DLLKLE +RE
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 251 -VLSERCGGSPTFA-----------------QWAAAAGVDQRELRRRLNYGILCKDKMIT 292
+++E+ P + +W A + +RRL +G K+KM+
Sbjct: 127 KIIAEKSEKEPKLSDIKAYLGKTELMAPLVEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 352
SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 353 SLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSP 412
+++DQSRTIRLP H+ E R+K+ K L E R P EE+A +++++L + S
Sbjct: 247 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSA 306
Query: 413 KAPRSLDQKIGINQN 427
+ P SL+ IG ++
Sbjct: 307 QLPISLETPIGKEED 321
>gi|422304379|ref|ZP_16391725.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9806]
gi|389790495|emb|CCI13646.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9806]
Length = 416
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 95/255 (37%), Positives = 138/255 (54%), Gaps = 39/255 (15%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE--------------------- 250
D +R RLL A EE++L+ I DLLKLE +RE
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFRLYSDAEWGKQVFLFERIE 126
Query: 251 -VLSERCGGSPTFA-----------------QWAAAAGVDQRELRRRLNYGILCKDKMIT 292
+++E+ P + +W A + +RRL +G K+KM+
Sbjct: 127 KIIAEKSEKEPKLSDIKAYLGKTELMAPMLEEWQAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 352
SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 353 SLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSP 412
+++DQSRTIRLP H+ E R+K+ K L E R P EE+A +++++L + S
Sbjct: 247 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSA 306
Query: 413 KAPRSLDQKIGINQN 427
+ P SL+ IG ++
Sbjct: 307 QLPISLETPIGKEED 321
>gi|425472577|ref|ZP_18851418.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9701]
gi|389881323|emb|CCI38113.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9701]
Length = 416
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 95/255 (37%), Positives = 138/255 (54%), Gaps = 39/255 (15%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE--------------------- 250
D +R RLL A EE++L+ I DLLKLE +RE
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 251 -VLSERCGGSPTFA-----------------QWAAAAGVDQRELRRRLNYGILCKDKMIT 292
+++E+ P + +W A + +RRL +G K+KM+
Sbjct: 127 RIIAEKSEKEPKLSDIKAYLGKTELTAPMVEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 352
SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 353 SLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSP 412
+++DQSRTIRLP H+ E R+K+ K L E R P EE+A +++++L + S
Sbjct: 247 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSA 306
Query: 413 KAPRSLDQKIGINQN 427
+ P SL+ IG ++
Sbjct: 307 QLPISLETPIGKEED 321
>gi|425439972|ref|ZP_18820283.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9717]
gi|389719676|emb|CCH96511.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9717]
Length = 416
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 95/255 (37%), Positives = 138/255 (54%), Gaps = 39/255 (15%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE--------------------- 250
D +R RLL A EE++L+ I DLLKLE +RE
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 251 -VLSERCGGSPTFA-----------------QWAAAAGVDQRELRRRLNYGILCKDKMIT 292
+++E+ P + +W A + +RRL +G K+KM+
Sbjct: 127 KIIAEKSEKEPKLSDIKAYLGKTELMAPMLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 352
SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 353 SLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSP 412
+++DQSRTIRLP H+ E R+K+ K L E R P EE+A +++++L + S
Sbjct: 247 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSA 306
Query: 413 KAPRSLDQKIGINQN 427
+ P SL+ IG ++
Sbjct: 307 QLPISLETPIGKEED 321
>gi|169883526|gb|ACA97858.1| RNA polymerase sigma factor [Microcystis aeruginosa PCC 7820]
Length = 416
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 97/255 (38%), Positives = 136/255 (53%), Gaps = 39/255 (15%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE--------------VLSERCG 257
D +R RLL A EE++L+ I DLLKLE +RE L ER
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 258 G-------------------------SPTFAQWAAAAGVDQRELRRRLNYGILCKDKMIT 292
+P +W A + +RRL +G K+KM+
Sbjct: 127 KIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 352
SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 353 SLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSP 412
+++DQSRTIRLP H+ E R+K+ K L E R P EE+A +++++L + S
Sbjct: 247 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSA 306
Query: 413 KAPRSLDQKIGINQN 427
+ P SL+ IG ++
Sbjct: 307 QLPISLETPIGKEED 321
>gi|425438187|ref|ZP_18818593.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9432]
gi|425444152|ref|ZP_18824209.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9443]
gi|425449157|ref|ZP_18829000.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 7941]
gi|425462821|ref|ZP_18842288.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9808]
gi|1710685|sp|P52322.1|RPOD_MICAE RecName: Full=RNA polymerase sigma factor rpoD1
gi|786173|dbj|BAA08853.1| sigma factor [Microcystis aeruginosa]
gi|1783286|dbj|BAA12850.1| principal sigma factor [Microcystis aeruginosa]
gi|389676661|emb|CCH94329.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9432]
gi|389730582|emb|CCI05187.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9443]
gi|389764330|emb|CCI09341.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 7941]
gi|389824092|emb|CCI27286.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9808]
Length = 416
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 97/255 (38%), Positives = 136/255 (53%), Gaps = 39/255 (15%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE--------------VLSERCG 257
D +R RLL A EE++L+ I DLLKLE +RE L ER
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 258 G-------------------------SPTFAQWAAAAGVDQRELRRRLNYGILCKDKMIT 292
+P +W A + +RRL +G K+KM+
Sbjct: 127 KIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 352
SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 353 SLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSP 412
+++DQSRTIRLP H+ E R+K+ K L E R P EE+A +++++L + S
Sbjct: 247 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSA 306
Query: 413 KAPRSLDQKIGINQN 427
+ P SL+ IG ++
Sbjct: 307 QLPISLETPIGKEED 321
>gi|425454830|ref|ZP_18834556.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9807]
gi|159026614|emb|CAO86546.1| rpoD1 [Microcystis aeruginosa PCC 7806]
gi|389804393|emb|CCI16640.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9807]
Length = 416
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 97/255 (38%), Positives = 136/255 (53%), Gaps = 39/255 (15%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE--------------VLSERCG 257
D +R RLL A EE++L+ I DLLKLE +RE L ER
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 258 G-------------------------SPTFAQWAAAAGVDQRELRRRLNYGILCKDKMIT 292
+P +W A + +RRL +G K+KM+
Sbjct: 127 KIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 352
SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 353 SLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSP 412
+++DQSRTIRLP H+ E R+K+ K L E R P EE+A +++++L + S
Sbjct: 247 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSA 306
Query: 413 KAPRSLDQKIGINQN 427
+ P SL+ IG ++
Sbjct: 307 QLPISLETPIGKEED 321
>gi|397614537|gb|EJK62861.1| hypothetical protein THAOC_16512 [Thalassiosira oceanica]
Length = 466
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 94/233 (40%), Positives = 137/233 (58%), Gaps = 5/233 (2%)
Query: 175 KARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQ 234
+A ++RA + +N K SR+ + SV+E + D + Y T + LL NEE+
Sbjct: 114 RAIKSRATKPGNSNGEPPKP--VSRKIKASVRETGF-DSMHYYMKTMGNHELLQKNEEII 170
Query: 235 LSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR--ELRRRLNYGILCKDKMIT 292
L+ IQ L+ EG R+ L PT+ +WAA+ + +L+R++ + K +
Sbjct: 171 LAREIQILIGWEGKRDELEAELVRPPTYQEWAASIDPEMTVIQLKRQIRRSLRAKAALTE 230
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 352
SN+RLVISIAK YQ G+N+QDL QEG GL R EKFD KGF+FSTYA WWIKQ + +
Sbjct: 231 SNLRLVISIAKRYQNRGLNMQDLCQEGTLGLTRACEKFDPEKGFRFSTYATWWIKQGIMR 290
Query: 353 SLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
+++DQ+RTIRLP H+ + V++ L SE GR P EE+A G+ ++
Sbjct: 291 AIADQARTIRLPVHIHDQLNLVRKTENDLASELGRDPTKEEIAAKVGIKPDKI 343
>gi|16330303|ref|NP_441031.1| RNA polymerase sigma factor SigD [Synechocystis sp. PCC 6803]
gi|383322044|ref|YP_005382897.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383325213|ref|YP_005386066.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491097|ref|YP_005408773.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384436364|ref|YP_005651088.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451814461|ref|YP_007450913.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|1652792|dbj|BAA17711.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339273396|dbj|BAK49883.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359271363|dbj|BAL28882.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359274533|dbj|BAL32051.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277703|dbj|BAL35220.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407958220|dbj|BAM51460.1| RNA polymerase sigma factor SigD [Bacillus subtilis BEST7613]
gi|451780430|gb|AGF51399.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 318
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 85/203 (41%), Positives = 134/203 (66%), Gaps = 1/203 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTF-AQWAAAAGVDQRELRRRLNYGI 284
LLT EE+ + IQ ++ L +++ L+E G P ++WA AA + REL + + G
Sbjct: 22 LLTHEEEIVYAKQIQQVVSLNEIKKSLAEGKDGEPVSPSEWAKAADLSIRELEKAIKEGE 81
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+W
Sbjct: 82 RAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYW 141
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+QA+ ++++++SRTIRLP H+ E ++K+A++QL E GR + E+AE L+ K+
Sbjct: 142 WIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQEKGRAASIAELAEHLELTPKQ 201
Query: 405 LHAVLLSPKAPRSLDQKIGINQN 427
+ L + P SLD ++G NQ+
Sbjct: 202 VREYLERSRHPLSLDLRVGDNQD 224
>gi|428770639|ref|YP_007162429.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428684918|gb|AFZ54385.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 318
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 132/202 (65%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ L+ IQ+L+ LE RE L ++ P+ +WA AA + ++ L +++ G
Sbjct: 23 LLTKEEEIVLAKQIQELVALEKKRETLKKKLEREPSKKEWAEAAKISEKNLDIKISRGEK 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+SIAK Y ++L DL+QEG G+ RG EKFD KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSIAKKYLKHNLDLLDLIQEGTIGMQRGVEKFDPKKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++SR IRLP H+ E ++++ +++L E GR E++EA L+ +++
Sbjct: 143 IRQAITRAIAEKSRAIRLPLHITEKLNKIRQTQRKLSEEKGRPATIAELSEALELTTEQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD K+G N +
Sbjct: 203 RDYLGKARQPLSLDLKVGDNND 224
>gi|390438739|ref|ZP_10227182.1| RNA polymerase sigma factor rpoD1 [Microcystis sp. T1-4]
gi|389837853|emb|CCI31306.1| RNA polymerase sigma factor rpoD1 [Microcystis sp. T1-4]
Length = 416
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 97/255 (38%), Positives = 136/255 (53%), Gaps = 39/255 (15%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE--------------VLSERCG 257
D +R RLL A EE++L+ I DLLKLE +RE L ER
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFRLYTDAEWGKQVFLFERIE 126
Query: 258 G-------------------------SPTFAQWAAAAGVDQRELRRRLNYGILCKDKMIT 292
+P +W A + +RRL +G K+KM+
Sbjct: 127 KIIVEKSEKEPKLSDIKAYLGKTELTAPLVEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 352
SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 353 SLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSP 412
+++DQSRTIRLP H+ E R+K+ K L E R P EE+A +++++L + S
Sbjct: 247 AIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSA 306
Query: 413 KAPRSLDQKIGINQN 427
+ P SL+ IG ++
Sbjct: 307 QLPISLETPIGKEED 321
>gi|22298374|ref|NP_681621.1| RNA polymerase sigma factor [Thermosynechococcus elongatus BP-1]
gi|22294553|dbj|BAC08383.1| group 2 RNA polymerase sigma factor [Thermosynechococcus elongatus
BP-1]
Length = 309
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 86/202 (42%), Positives = 127/202 (62%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ L +Q ++ L R+ L++ G TF +WAAA + EL L G
Sbjct: 14 LLTHEQEIILGKQVQQMMALREKRDALTKELGREATFEEWAAACNLTPTELCNILKRGER 73
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV+S+AK YQ + L DLVQEG GL RG EKFD ++G+KFSTYA+WW
Sbjct: 74 AKQKMIEANLRLVVSVAKKYQKRNLELLDLVQEGTLGLERGVEKFDPTRGYKFSTYAYWW 133
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+RTIRLP H+ E ++K +++L + GR EVA+A L +++
Sbjct: 134 IRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAEVAKALELEPEQI 193
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 194 REYLTLARQPVSLDLRVGDNQD 215
>gi|443316918|ref|ZP_21046344.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783448|gb|ELR93362.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 317
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 85/202 (42%), Positives = 131/202 (64%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ L +Q L LE RE L+E +PT A+WAAA + + +L + G
Sbjct: 22 LLTHEEEIVLGKQVQHLSLLEKRREALTEELDRTPTQAEWAAAVNLSEGQLLTIVRAGDT 81
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K +M+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 82 AKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 141
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++SRTIRLP H+ E ++K+A++QL + GR E+A L+ K++
Sbjct: 142 IRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQQYGRAATVMELAAELELTPKQV 201
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 202 RDYLEKARQPLSLDLRVGDNQD 223
>gi|158335492|ref|YP_001516664.1| RNA polymerase sigma factor [Acaryochloris marina MBIC11017]
gi|158305733|gb|ABW27350.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 327
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 127/202 (62%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q ++ L L++ + + G P+ +WA A + +L L+ G
Sbjct: 32 LLTHEEEIVFGKQVQAMMALLDLQKTVMDELGREPSLEEWAEKANLSPSQLELSLHQGQQ 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV+S+AK YQ + L DL+QEG GL RG EKFD ++G+KFSTYA+WW
Sbjct: 92 AKQKMIEANLRLVVSVAKKYQKRNLELLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+RTIRLP H+ E ++K+A+++L + GR E+AEA L ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKKAQRELSQKLGRSATPAEIAEALELEPSQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 212 RDYLTIARQPISLDLRVGDNQD 233
>gi|443317112|ref|ZP_21046533.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783319|gb|ELR93238.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 327
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 84/202 (41%), Positives = 125/202 (61%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ L +Q + L L+ + E G P+ +WA AA +D L ++L+ G
Sbjct: 32 LLTHEQEIVLGKQVQQFMTLLDLKTQMKESLGQDPSDQEWAGAAHLDTATLTQQLHEGEQ 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K +MI +N+RLV++IAK YQ + DL+QEG GL RG EKFD KG+KFSTYA+WW
Sbjct: 92 AKRQMIEANLRLVVAIAKKYQKRNLEFLDLIQEGTLGLERGVEKFDPMKGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+RTIRLP H+ E ++K +++L GR E+AEA L + ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKRVQRELSQTLGRSATVGEIAEALELEVTQV 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD +IG NQ+
Sbjct: 212 REYLTMARQPISLDVRIGDNQD 233
>gi|255550882|ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
Length = 560
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 93/273 (34%), Positives = 168/273 (61%), Gaps = 18/273 (6%)
Query: 164 IAVRSRRQTERKARRTRAAEKAAANVMS-------VKSGSTSRRKRPSVQEVDYSDPLRY 216
+ V + ++ ERK+RR RA+ + S ++SGS ++P+V +
Sbjct: 204 VVVHTAKKEERKSRRERASARKGHKSPSLPLPSRPIQSGS----EKPTVSSGKKA----- 254
Query: 217 LRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQREL 276
+ + S RL+ A E +++ GI+ L LE +R L E + + WA AAG+D + L
Sbjct: 255 --SKSKSRRLIIARNEAEMARGIKVLADLEKIRTTLEEETERVVSLSCWAEAAGLDVKVL 312
Query: 277 RRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF 336
+++L++G C+D++I S LV+ A+NY+G G+ L+DL+Q G G++ GAE+FD ++G+
Sbjct: 313 QQQLSFGWYCRDELIKSTRSLVLYFARNYRGTGIALEDLLQAGNLGVLEGAERFDHTRGY 372
Query: 337 KFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAE 396
+FSTY +WI++++ K +S +R I++P + A Y++++ARK L + NG++P+++E+A+
Sbjct: 373 RFSTYVQYWIRKSMSKIVSRLARGIQIPCTLSRAIYQIQKARKALTTSNGKYPDDDEIAK 432
Query: 397 ATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLK 429
TGLS+ ++ + + S+DQKIG + N K
Sbjct: 433 YTGLSLAKIESASRCLRVVGSIDQKIGESLNAK 465
>gi|260436019|ref|ZP_05789989.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8109]
gi|260413893|gb|EEX07189.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8109]
Length = 335
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 128/198 (64%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ L +Q+L+ LE L L + G P+ A A+G+ +L+R+L +G
Sbjct: 40 LLTHEQEITLGRQVQELMDLESLEAELESKAGEKPSRDVLAKASGLSSMQLKRKLQHGRR 99
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+WW
Sbjct: 100 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 159
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q + ++++++SRTIRLP H+ E ++K+ +++L E GR P E+AE L +
Sbjct: 160 IRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTELAEFVELPEDDV 219
Query: 406 HAVLLSPKAPRSLDQKIG 423
++ + P SL+ K+G
Sbjct: 220 KDLMCRARQPVSLEMKVG 237
>gi|16331222|ref|NP_441950.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|383322965|ref|YP_005383818.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383326134|ref|YP_005386987.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383492018|ref|YP_005409694.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384437286|ref|YP_005652010.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451815378|ref|YP_007451830.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|1001398|dbj|BAA10020.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339274318|dbj|BAK50805.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359272284|dbj|BAL29803.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359275454|dbj|BAL32972.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359278624|dbj|BAL36141.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|451781347|gb|AGF52316.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 345
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 84/202 (41%), Positives = 127/202 (62%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ L +Q ++ L ++ L++R G P+ +WA AA + +L R L G
Sbjct: 49 LLTHEQEIILGKQVQQMMALLEHKKALADRLGREPSDPEWAEAADLSVTKLHRYLGQGER 108
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 109 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 168
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q RTIRLP H+ E ++K+ +++L + GR EVA+A + ++
Sbjct: 169 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKTQRELSQQLGRSATPAEVAKALEIDPSQI 228
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 229 REYLSLSRQPISLDVRVGDNQD 250
>gi|443320707|ref|ZP_21049791.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442789590|gb|ELR99239.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 318
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 133/202 (65%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ + +Q L++LE + L E+ + A+WA AA V +LR+ ++ G +
Sbjct: 23 LLTHEEEIIYAKRVQKLVELEKCKHQLEEKTKTELSEAEWAKAANVTVAKLRKDVDAGEV 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMIEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++SRTIRLP H+ E ++K+A++Q+ + GR E+AE L+ +++
Sbjct: 143 IRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQIAQQKGRSATIAELAEELELTPRQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G N +
Sbjct: 203 REYLERARQPLSLDLRVGDNND 224
>gi|88809912|ref|ZP_01125417.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
gi|88786102|gb|EAR17264.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
Length = 355
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 139/223 (62%), Gaps = 4/223 (1%)
Query: 202 RPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPT 261
RPS +VD YLR LL+ +E+ L +Q+L++LE + L E+ GG
Sbjct: 38 RPSGTDVDLVRS--YLR-DIGRVPLLSHQQEITLGRQVQELMELESVEAELQEKRGGEAV 94
Query: 262 FA-QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGC 320
A + A AAG+ +L+R+L G K++M+ +N+RLV+S+AK Y M L DL+QEG
Sbjct: 95 LAAELAKAAGLSAVQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGT 154
Query: 321 RGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQ 380
GLVRG EKFD ++G+KFSTYA+WWI+Q + ++++++SRTIRLP H+ E ++K+ +++
Sbjct: 155 IGLVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRE 214
Query: 381 LYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
L E GR P+ E+A L + ++ + P SL+ K+G
Sbjct: 215 LSQELGRTPSVTELASFVELPEDEVKELMCRARQPVSLEMKVG 257
>gi|302851352|ref|XP_002957200.1| hypothetical protein VOLCADRAFT_109400 [Volvox carteri f.
nagariensis]
gi|300257450|gb|EFJ41698.1| hypothetical protein VOLCADRAFT_109400 [Volvox carteri f.
nagariensis]
Length = 733
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 133/218 (61%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+D + ++++ +L+ E++++ QD L LE ++ + PT + AAA G
Sbjct: 399 NDGTDHFLHSSANVNILSPEAELEVTEMCQDFLFLEKVKRQCEKTLHRKPTNDECAAAVG 458
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
+D R + G+ K+ ++ SN RLV+++ K Y G GM+LQDLV EG +GL+RG E +
Sbjct: 459 MDVMAYNMRYDAGLKAKELLLKSNYRLVMTVCKRYIGKGMHLQDLVSEGVKGLLRGVEMY 518
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
DAS+GF+F TYAHWWI+QAV +S+++ R +RLP HM+E ++K A L E R P+
Sbjct: 519 DASRGFRFGTYAHWWIRQAVSRSMAETGRAVRLPVHMIEQLTKLKNATAALAMELNREPS 578
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNL 428
EE+AEA GL R+ +L + +A S++ IG + L
Sbjct: 579 VEEMAEAVGLPPSRVELLLDAARAASSMESAIGGDDGL 616
>gi|407961401|dbj|BAM54641.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 328
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 84/202 (41%), Positives = 127/202 (62%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ L +Q ++ L ++ L++R G P+ +WA AA + +L R L G
Sbjct: 32 LLTHEQEIILGKQVQQMMALLEHKKALADRLGREPSDPEWAEAADLSVTKLHRYLGQGER 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q RTIRLP H+ E ++K+ +++L + GR EVA+A + ++
Sbjct: 152 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKTQRELSQQLGRSATPAEVAKALEIDPSQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 212 REYLSLSRQPISLDVRVGDNQD 233
>gi|428204671|ref|YP_007083260.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427982103|gb|AFY79703.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 318
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/220 (42%), Positives = 146/220 (66%), Gaps = 2/220 (0%)
Query: 209 DYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
+++DP+R YLR LLT EE+ + +Q L+ LE L+E L ++ G PT ++WAA
Sbjct: 6 NFTDPVRAYLREIGRVP-LLTHEEEIHYAKRVQRLVVLENLKESLKQKLGKEPTDSEWAA 64
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
AA + + ELR + G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG
Sbjct: 65 AAELTEAELRNCIAAGDAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTLGMQRGV 124
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
EKFD +KG++FSTYA+WWI+QA+ ++++++SRTIRLP H+ E ++K+A++QL ENGR
Sbjct: 125 EKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLAQENGR 184
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
E+A+ L+ K++ L + P SLD ++G N +
Sbjct: 185 AATIAELAQELELTPKQVREYLERARQPLSLDLRVGDNHD 224
>gi|443329714|ref|YP_007378785.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428682340|gb|AFZ61104.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 328
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 129/202 (63%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ S +Q ++ L+ +E L ++ P+ + A + + E++ G+
Sbjct: 32 LLTHEEEISSSKQVQQMITLQNKKETLKKQLNHEPSQKELAQYVQLSEMEVKEIFQKGVQ 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV+SIAK YQG + DL+QEG GL RG EKFD+++G+KFSTYA+WW
Sbjct: 92 AKQKMIAANLRLVVSIAKKYQGRNVEFMDLIQEGSLGLERGVEKFDSTRGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I Q + +++S QSRTIRLP H+ E ++K+ +++L + R P+ E+AE L+ ++
Sbjct: 152 ISQGMTRAISQQSRTIRLPIHLTEKLNKLKKVQRELSQKLNRSPSMFEIAEKMQLNPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
+L+ + P SLD+++G N++
Sbjct: 212 RELLMISRQPVSLDKQVGDNED 233
>gi|428220179|ref|YP_007104349.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
gi|427993519|gb|AFY72214.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
Length = 334
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 88/202 (43%), Positives = 125/202 (61%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q L+ +E LSE+ PT +WA A G++ L L G
Sbjct: 38 LLTNEEEIIYGKQVQHLMGYITTQETLSEQFDRLPTQEEWAQAVGLEPNALNDALKQGTR 97
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV+S+AK YQ + L DLVQEG GL R +KFD +KGFKFSTYA+WW
Sbjct: 98 AKRKMIEANLRLVVSVAKKYQKRNLELLDLVQEGTLGLERAVDKFDPTKGFKFSTYAYWW 157
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+RTIRLP H+ E ++K+A++QL + GR EVAE + +++
Sbjct: 158 IRQAITRAIAQQARTIRLPVHITEKLNKIKKAQRQLAQDLGRVATAAEVAETLEIKPEQV 217
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD +IG NQ+
Sbjct: 218 RECLSLARQPISLDLRIGDNQD 239
>gi|124021877|ref|YP_001016184.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
gi|123962163|gb|ABM76919.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
Length = 350
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 130/198 (65%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ +E+ L +Q+L+ LE L L + G + + A AAG+ + +L+++L G
Sbjct: 55 LLSHEQEITLGRQVQELMSLEQLESELEGKTGAPASRKELAKAAGLSELQLKKKLQIGRR 114
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K++M+++N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+WW
Sbjct: 115 AKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 174
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q + ++++++SRTIRLP H+ E ++K+ +++L E GR P E+AE L + +
Sbjct: 175 IRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQEMGRTPTVSELAEFVELPEEEV 234
Query: 406 HAVLLSPKAPRSLDQKIG 423
++ + P SL+ K+G
Sbjct: 235 KDLMCRARQPMSLEMKVG 252
>gi|124022691|ref|YP_001016998.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
gi|123962977|gb|ABM77733.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
Length = 320
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 130/198 (65%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ +E+ L +Q+L+ LE L L + G + + A AAG+ + +L+++L G
Sbjct: 25 LLSHEQEITLGRQVQELMSLEQLESELEGKTGAPASRKELAKAAGLSELQLKKKLQSGRR 84
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K++M+++N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+WW
Sbjct: 85 AKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 144
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q + ++++++SRTIRLP H+ E ++K+ +++L E GR P E+AE L + +
Sbjct: 145 IRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQEMGRTPTVSELAEFVELPEEEV 204
Query: 406 HAVLLSPKAPRSLDQKIG 423
++ + P SL+ K+G
Sbjct: 205 KDLMCRARQPMSLEMKVG 222
>gi|148238489|ref|YP_001223876.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp. WH
7803]
gi|147847028|emb|CAK22579.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 355
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/247 (38%), Positives = 147/247 (59%), Gaps = 5/247 (2%)
Query: 179 TRAAEKAAANVMSVKSGST-SRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSA 237
T A + AA KSG T + RPS +VD YLR LL+ +E+ L
Sbjct: 14 TVAVKSAAGASQPAKSGPTKAMASRPSGTDVDLVRS--YLR-DIGRVPLLSHQQEITLGR 70
Query: 238 GIQDLLKLEGLREVLSERCGGSPT-FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIR 296
+Q+L+ LE L E+ GG A+ A AAG+ +L+R+L G K++M+ +N+R
Sbjct: 71 QVQELMDLEATEAELQEKRGGEAVPAAELAKAAGLSAVQLKRKLQAGRRAKERMVAANLR 130
Query: 297 LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD 356
LV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+WWI+Q + +++++
Sbjct: 131 LVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAE 190
Query: 357 QSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR 416
+SRTIRLP H+ E ++K+ +++L + GR P+ E+A L + ++ + P
Sbjct: 191 KSRTIRLPIHITEMLNKLKKGQRELSQDLGRTPSVTELAAFVELPEDEVKELMCRARQPV 250
Query: 417 SLDQKIG 423
SL+ K+G
Sbjct: 251 SLEMKVG 257
>gi|428208314|ref|YP_007092667.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428010235|gb|AFY88798.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 318
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 130/202 (64%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L L L+E L + G PT +W+ AA +D+ L + G +
Sbjct: 23 LLTHEQEIVYGKQVQRLSTLYALQEELVAKLGREPTLEEWSEAARIDKTALSTAIAEGEI 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K +M+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+A++QL GR P+ E+A A L+ K++
Sbjct: 143 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQNLGRAPSIVELATALELTPKQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 203 REYLERARLPLSLDLRVGDNQD 224
>gi|428226189|ref|YP_007110286.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427986090|gb|AFY67234.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 318
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 85/202 (42%), Positives = 133/202 (65%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L L+ +RE L ER PT +WA AAGV + +L + + G L
Sbjct: 23 LLTHEQEILYGKQVQRLSGLQSIREGLVERWDREPTSTEWAEAAGVSEADLEQVIQEGEL 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K +M+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+A++QL + GR + E+AE L+ K++
Sbjct: 143 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQKLGRAASAAELAEELDLTTKQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 203 RDYLEKARQPLSLDLRVGDNQD 224
>gi|359457298|ref|ZP_09245861.1| RNA polymerase sigma factor [Acaryochloris sp. CCMEE 5410]
Length = 327
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/202 (41%), Positives = 127/202 (62%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q ++ L L++ + G P+ +WAA A + +L L+ G
Sbjct: 32 LLTHEEEIVFGKQVQAMMALLDLQKTEMDELGREPSSEEWAAKANLSPSQLELSLHQGQQ 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV+S+AK YQ + L DL+QEG GL RG EKFD ++G+KFSTYA+WW
Sbjct: 92 AKQKMIEANLRLVVSVAKKYQKRNLELLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+RTIRLP H+ E ++K+A+++L + GR E+AEA L ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKKAQRELSQKLGRSATPAEIAEALELEPSQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 212 RDYLTIARQPISLDLRVGDNQD 233
>gi|119489578|ref|ZP_01622338.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
gi|119454490|gb|EAW35638.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Length = 319
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 132/202 (65%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L+ +E L++R G P++A+WA AGV +EL++ L G
Sbjct: 24 LLTHEQEILYGKQVQQSAILQEGKEKLAKRLGREPSYAEWAENAGVSLKELKQALEDGQT 83
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 84 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 143
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+A++ L + GR E+A+ L+ K++
Sbjct: 144 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRSLAQDLGRAATIAELADELDLNPKQI 203
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 204 REYLERARLPLSLDLRVGDNQD 225
>gi|449451030|ref|XP_004143265.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
[Cucumis sativus]
gi|449482444|ref|XP_004156283.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
[Cucumis sativus]
Length = 562
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/263 (33%), Positives = 151/263 (57%), Gaps = 3/263 (1%)
Query: 165 AVRSRRQTERKARRTRAAEKAAA-NVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSS 223
VRS R +R++++ + + + +S G SRRK + ++ D +DPLR +
Sbjct: 202 TVRSTRLQDRRSKKRKVPKHVTTIDEISNFRGKDSRRK--TSEKFDPNDPLRLFLWGPET 259
Query: 224 SRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYG 283
+LLTA EE +L IQDL+ L+ ++ L + PT +WA A G+ + L+ +L+
Sbjct: 260 KKLLTAQEESELIVQIQDLMILDNVKARLQSQFDREPTLVEWAEALGITCQHLQSQLHVF 319
Query: 284 ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH 343
++K+I +N+R+V+ IAK YQG G++L DL+Q G GL++ EKF G +F +YA+
Sbjct: 320 QTSREKLINANLRMVVHIAKQYQGRGLSLHDLLQVGSLGLMKSVEKFKPQAGCRFGSYAY 379
Query: 344 WWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMK 403
WWI+ ++ K++ SRTIRLP ++ +V EA+ P+ EE+A G++++
Sbjct: 380 WWIRHSITKAIFQHSRTIRLPENVYALLGKVTEAKNYFVRAGNYKPSKEELAARVGITVE 439
Query: 404 RLHAVLLSPKAPRSLDQKIGINQ 426
R ++ + PRSL Q + +Q
Sbjct: 440 RFDKLMFMSRIPRSLQQPVWADQ 462
>gi|298490014|ref|YP_003720191.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298231932|gb|ADI63068.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 332
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 131/202 (64%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q L +RE L+ + G PT +WAA+A V+ EL + G +
Sbjct: 37 LLTHEEEIHYGKQVQRCTTLYEVRENLATQLGYQPTLEEWAASAQVEPVELNTAIAEGEI 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K +M+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 97 AKRRMVEANLRLVVSVAKKYIKRNIDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 156
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +++++++RTIRLP H+ E ++K+A++QL + GR P E+A+ L+ +++
Sbjct: 157 IRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQKLGRAPTAIELADELELTPRQV 216
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G N +
Sbjct: 217 RECLEKARLPLSLDLRLGDNYD 238
>gi|411120413|ref|ZP_11392785.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410709082|gb|EKQ66597.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 318
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 130/202 (64%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L L ++ L+ R G +P+F +WA A+ + EL++ + G
Sbjct: 23 LLTHEQEVVFGKQVQRLTLLNDTKDGLANRLGRTPSFEEWAQASQLSSAELKQAIAEGEY 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYTKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+A++QL GR E+A+ L+ K++
Sbjct: 143 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQRLGRAATAAELAQELDLTPKQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 203 RDYLEQARQPLSLDLRVGDNQD 224
>gi|434387533|ref|YP_007098144.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428018523|gb|AFY94617.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 318
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 130/202 (64%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L+ L ++ L E G P+ +WA AA +D+ +L++ ++ G
Sbjct: 23 LLTHEQEILYGKQVQQLVSLVAVKNTLMEEFGREPSLTEWATAANIDELQLQKTISAGEN 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K +M+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD SKG++FSTYA+WW
Sbjct: 83 AKRRMVEANLRLVVSVAKKYIKRNIDLLDLIQEGTIGMQRGVEKFDPSKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +++++++R IRLP H+ E ++K+A++ L + GR E+A LS K++
Sbjct: 143 IRQAITRAIAEKARAIRLPIHITEKLNKIKKAQRSLAQQFGRAATINELAAELELSSKQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 203 REYLERARQPLSLDLRVGDNQD 224
>gi|428214900|ref|YP_007088044.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
gi|428003281|gb|AFY84124.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
Length = 334
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 83/219 (37%), Positives = 128/219 (58%)
Query: 209 DYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAA 268
D +D +R LLT +E+ +Q ++ +E L ++ PT +WA A
Sbjct: 22 DSTDTIRSYLHEIGRVPLLTHEQEIVFGKQVQQMMAFLEAKETLEKKLKREPTEEEWAEA 81
Query: 269 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 328
G +L+ + G K KMI +N+RLV++IAK YQ + DL+QEG GL RG E
Sbjct: 82 VGHSVGDLKNLVKIGRRSKQKMIEANLRLVVAIAKKYQKRNLEFLDLIQEGTLGLERGVE 141
Query: 329 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH 388
KFD +G+KFSTYA+WWI+QA+ ++++ Q+RTIRLP H+ E ++K+ +++L GR
Sbjct: 142 KFDPMRGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKVQRELTQNLGRS 201
Query: 389 PNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
P+ E+ EA L ++ LL + P SLD ++G NQ+
Sbjct: 202 PSPSEIGEALELEPAQIREYLLMARQPVSLDLRVGDNQD 240
>gi|78183723|ref|YP_376157.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CC9902]
gi|78168017|gb|ABB25114.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. CC9902]
Length = 332
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 126/198 (63%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ L +Q L+++E L L R G P Q A AA + +L+R+L G
Sbjct: 37 LLTHEQEITLGRQVQQLMEIETLEAELESRDGAKPARDQLAKAAELSTVQLKRKLQQGHR 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+WW
Sbjct: 97 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 156
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q + ++++++SRTIRLP H+ E ++K+ +++L E GR P E+A+ L +
Sbjct: 157 IRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTELAQFVDLPEDEV 216
Query: 406 HAVLLSPKAPRSLDQKIG 423
++ + P SL+ K+G
Sbjct: 217 KDLMCRARQPVSLEMKVG 234
>gi|223998999|ref|XP_002289172.1| RNA polymerase [Thalassiosira pseudonana CCMP1335]
gi|220974380|gb|EED92709.1| RNA polymerase [Thalassiosira pseudonana CCMP1335]
Length = 318
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 132/214 (61%), Gaps = 2/214 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA-- 269
D ++Y T + LL NEE+ L+ IQ L+K E +RE L + PT+ +WA A
Sbjct: 1 DSMKYYMKTMGNHDLLQKNEEIILAREIQILIKWEEVREELEGQLLRPPTYQEWANAIEP 60
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
G+ ++++++ + K + SN+RLVISIAK YQG G+N+QDL QEG GL R EK
Sbjct: 61 GMTVTQIKKQIRRSLRAKAALTESNLRLVISIAKRYQGRGLNMQDLCQEGTLGLTRACEK 120
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
FD +GF+FSTYA WWIKQ + ++++DQ+RTIRLP H+ + V++A + L +E GR
Sbjct: 121 FDPERGFRFSTYATWWIKQGIMRAIADQARTIRLPVHIHDQLSIVRKAERDLQNELGRDA 180
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
EEVA G+ ++ + + S++Q++G
Sbjct: 181 TKEEVAAKVGMKPDKIEFLKRASVGSISMEQELG 214
>gi|116071698|ref|ZP_01468966.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. BL107]
gi|116065321|gb|EAU71079.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. BL107]
Length = 332
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 126/198 (63%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ L +Q L+++E L L R G P Q A AA + +L+R+L G
Sbjct: 37 LLTHEQEITLGRQVQQLMEIETLEAELESRDGAKPARDQLAKAAELSTVQLKRKLQQGHR 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+WW
Sbjct: 97 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 156
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q + ++++++SRTIRLP H+ E ++K+ +++L E GR P E+A+ L +
Sbjct: 157 IRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTELAQFVDLPEDEV 216
Query: 406 HAVLLSPKAPRSLDQKIG 423
++ + P SL+ K+G
Sbjct: 217 KDLMCRARQPVSLEMKVG 234
>gi|427714236|ref|YP_007062860.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
gi|427378365|gb|AFY62317.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
Length = 325
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 84/202 (41%), Positives = 124/202 (61%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ L +Q L++L L E L+ G PT A+ A A + +L L G
Sbjct: 30 LLTHEQEIILGKQVQQLMRLRDLEETLTTELGREPTLAELATVAEMPPEKLNLALRKGQR 89
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV+S+AK YQ + L DL+QEG GL RG EKFD ++G+KFSTYA+WW
Sbjct: 90 AKQKMIEANLRLVVSVAKKYQKRNLELLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWW 149
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+RTIRLP H+ E ++K +++L GR E+A+A L ++
Sbjct: 150 IRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELSQGLGRSATPAEIAQALELEPAQI 209
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 210 REYLTLSRQPISLDLRVGDNQD 231
>gi|125602683|gb|EAZ42008.1| hypothetical protein OsJ_26557 [Oryza sativa Japonica Group]
Length = 497
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 100/297 (33%), Positives = 159/297 (53%), Gaps = 23/297 (7%)
Query: 143 SADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANV-MSVKSGSTSRRK 201
S D ++EEL Q + VRS R ER+++R A + A+V S + +
Sbjct: 103 SVDSSKSNEEL-----QSKGQVFVRSTRLLERRSKRRYAPRASIADVSCSADNSKKKEKS 157
Query: 202 RPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQD----------------LLKL 245
+ + ++ +P + ++ LTA EE L + IQ L+K+
Sbjct: 158 KKYGRVLEPDEPFKLFLRDRETTEFLTAKEERHLFSKIQAKPYFYPVIFIFRTAQILMKI 217
Query: 246 EGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 305
E L +CG PT A+WA A G+ +EL+ + G C++KM SN RLVI +A+ Y
Sbjct: 218 EEAHRKLEVQCGREPTLAEWAEAVGMSSKELQSSIRTGRRCREKMARSNFRLVIHVARKY 277
Query: 306 QGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF 365
+G G+++QDLVQ+GC GL++ EKF+ SKG +F TYA+WWI+Q+++KS+ SR IRLP
Sbjct: 278 EGYGLDIQDLVQDGCSGLMKTFEKFNPSKGCRFPTYAYWWIRQSIKKSIFKNSRLIRLPE 337
Query: 366 HMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKI 422
+ +V +AR + E G P N VA G+++++L + + PRS+ +
Sbjct: 338 SVYALLRKVGKARMECIME-GEQPTNANVARRAGITIEKLAKLRAKTRKPRSMQDHV 393
>gi|1405331|dbj|BAA11832.1| chloroplast RNA polymerase sigma subunit [Cyanidium caldarium]
Length = 591
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 86/201 (42%), Positives = 126/201 (62%), Gaps = 4/201 (1%)
Query: 212 DPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
D +R YLR +LL EE++LS + L+ LE + E G SPT ++WA G
Sbjct: 276 DTIRSYLREI-GRYQLLHPGEEIELSKQVCILMDLEQFQRSFREEHGKSPTESEWAQGCG 334
Query: 271 V--DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 328
D +LR + G K++M+T+N+RLV+SIAK Y G+ LQDL+QEG GL+RG E
Sbjct: 335 YGDDVEKLREHIRDGRKAKERMVTANLRLVVSIAKRYSNRGVALQDLIQEGSIGLIRGVE 394
Query: 329 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH 388
KFDA +GF+FSTYA WWI+Q++ +++SD SR+IRLP H+ + +++ K L E GR
Sbjct: 395 KFDAERGFRFSTYATWWIRQSITRAISDSSRSIRLPVHVHDTISLIRKQTKALQVELGRP 454
Query: 389 PNNEEVAEATGLSMKRLHAVL 409
P+ EE+ E+ G+ + V+
Sbjct: 455 PSEEEICESVGIDRAKYRLVM 475
>gi|414077761|ref|YP_006997079.1| RpoD family RNA polymerase sigma subunit SigD [Anabaena sp. 90]
gi|413971177|gb|AFW95266.1| RpoD family RNA polymerase sigma subunit SigD [Anabaena sp. 90]
Length = 318
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 131/202 (64%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q L +RE L+ + G PT +WAAA+ ++ EL + + G +
Sbjct: 23 LLTHEEEIFYGKQVQRSTALHEIREGLAAQLGHEPTVEEWAAASDIEVSELNQAIAVGEI 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +++++++RTIRLP H+ E ++K+A++QL GR P E+++ L+ K++
Sbjct: 143 IRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQGLGRAPTVAELSQELDLTPKQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G N +
Sbjct: 203 REYLEKARLPLSLDLRLGDNYD 224
>gi|428314272|ref|YP_007125249.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428255884|gb|AFZ21843.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 319
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 128/202 (63%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L L+ ++E L + G PT +WA AA + EL +N G +
Sbjct: 23 LLTHEQEILYGKQVQRLTALQDMKESLWQELGHEPTLEEWATAAELSPSELNSHINAGEI 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+A++ L GR E+A+ L+ K++
Sbjct: 143 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRYLAQNLGRAATVGELAQELDLTPKQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 203 REYLERARQPLSLDLRVGDNQD 224
>gi|449017038|dbj|BAM80440.1| sigma subunit for chloroplast RNA polymerase [Cyanidioschyzon
merolae strain 10D]
Length = 721
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 86/221 (38%), Positives = 136/221 (61%), Gaps = 9/221 (4%)
Query: 225 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV--DQRELRRRLNY 282
+LL EE++LS + L+ LE ++ E+ G SPT +WA G D LR+ +
Sbjct: 419 QLLQPGEEVELSRQVCVLMDLERFQKSFREQHGKSPTELEWARGCGYGEDVEALRKHIRD 478
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 342
G K++M+T+N+RLV+SIAK Y G+ LQDL+QEG GL+RG EKFDA +GF+FSTYA
Sbjct: 479 GRSAKERMVTANLRLVVSIAKRYSNRGVALQDLIQEGSIGLIRGVEKFDAGRGFRFSTYA 538
Query: 343 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSM 402
WWI+Q++ +++SD SR+IRLP H+ + +++ K L+++ GR P +E+ E+ G+ +
Sbjct: 539 TWWIRQSITRAISDSSRSIRLPVHVHDTISMIRKHTKALHTQLGRPPREDEICESVGIDI 598
Query: 403 KRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFILNLADSLI 443
+ ++ + SL+ + + I NL +SLI
Sbjct: 599 AKYRLIMECSQNIVSLETPMHGTDD-------IHNLGESLI 632
>gi|224000633|ref|XP_002289989.1| plastid RNA polymerase sigma factor [Thalassiosira pseudonana
CCMP1335]
gi|220975197|gb|EED93526.1| plastid RNA polymerase sigma factor [Thalassiosira pseudonana
CCMP1335]
Length = 321
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 88/197 (44%), Positives = 125/197 (63%), Gaps = 2/197 (1%)
Query: 224 SRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYG 283
+ LLTA EE L ++ ++K E + E LS G SP+ A+WAAA R R +
Sbjct: 2 TELLTAKEEYSLGMKVKFMVKCEAVHEGLSVEMGRSPSIAEWAAACS--PRLFREMMLTA 59
Query: 284 ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH 343
K +M+ N+RLV+SIA+ Y G G+N+QDLVQEG GL R AEKFD KGFKFSTYA
Sbjct: 60 KEAKQRMVQCNMRLVVSIARRYHGVGVNVQDLVQEGSLGLARAAEKFDPKKGFKFSTYAS 119
Query: 344 WWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMK 403
WWI+QAV +S++ SRTIRLP H+ +V+ AR+ L E GR P NEE+A ++++
Sbjct: 120 WWIQQAVFRSIAYHSRTIRLPVHVHNLLNKVRRARQVLQQELGRTPTNEEMAVEMDMTIE 179
Query: 404 RLHAVLLSPKAPRSLDQ 420
+ + ++ + + SL++
Sbjct: 180 KYNKMIRTTRNAISLER 196
>gi|428307386|ref|YP_007144211.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428248921|gb|AFZ14701.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 327
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 125/202 (61%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E L+E+ PT ++WAA + + EL R + G
Sbjct: 32 LLTHEQEIVYGKQVQQMMALIDAKEALAEQQNREPTASEWAAQVHLSEDELTRIITLGQR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+R IRLP H+ E ++K+ +++L + GRH E+A A L ++
Sbjct: 152 IRQAITRAIAQQARAIRLPIHITEKLNKIKKTQRELAQKLGRHATPTEIAVALELEPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 212 REYLNIARQPVSLDVRVGDNQD 233
>gi|194476921|ref|YP_002049100.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Paulinella chromatophora]
gi|171191928|gb|ACB42890.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Paulinella chromatophora]
Length = 321
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 137/221 (61%)
Query: 203 PSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTF 262
P+ Q +D +R S LLT +E+ L +Q+L+ ++ + L + G PT
Sbjct: 4 PNDQTSSDADLVRSYLKEISRIPLLTHEQEITLGRQVQELICIQETEQKLELKNGIKPTQ 63
Query: 263 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 322
+ A + + +++R++ +G K++M++SN+RLV+SIAK Y M L DLVQEG G
Sbjct: 64 EELANSLDLSINQVKRKIIHGKRAKEQMVSSNLRLVVSIAKKYTKRSMELLDLVQEGTIG 123
Query: 323 LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLY 382
L+RG EKFD ++G+KFSTYA+WWI+Q + +++S+QSRTIRLP H+ E ++K+A++ L
Sbjct: 124 LIRGVEKFDPTRGYKFSTYAYWWIRQGITRAISEQSRTIRLPIHITEELNKLKKAQRDLS 183
Query: 383 SENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
GR P E+A+ L+ K + +L K P SL+ KIG
Sbjct: 184 QSLGRTPTVIELAKMIKLTEKEVKELLCHAKQPVSLEMKIG 224
>gi|126661338|ref|ZP_01732404.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
gi|126617371|gb|EAZ88174.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
Length = 328
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 126/202 (62%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E L++R G P+ +WA ++++ L++ L G
Sbjct: 32 LLTHEQEIIYGKQVQTMMNLLEKKEELAQRVGKEPSIQEWAKEVNIEEKALQKALEQGER 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+RTIRLP H+ E ++K+ +++L GR E+A+ + ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQSLGRSATPAEIAQELEIEPSQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 212 REFLSIARQPISLDVRVGDNQD 233
>gi|33863339|ref|NP_894899.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9313]
gi|33640788|emb|CAE21243.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9313]
Length = 320
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 130/198 (65%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ +E+ L +Q+L+ LE L L + G + + A AAG+ + +L+++L G
Sbjct: 25 LLSHEQEITLGRQVQELMSLEQLESELEGQTGEPASRKELAKAAGLSELQLKKKLQSGRR 84
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K++M+++N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+WW
Sbjct: 85 AKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 144
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q + ++++++SRTIRLP H+ E ++K+ +++L E GR P E+AE L + +
Sbjct: 145 IRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQEMGRTPTVSELAEFVELPEEEV 204
Query: 406 HAVLLSPKAPRSLDQKIG 423
++ + P SL+ K+G
Sbjct: 205 KDLMCRARQPMSLEMKVG 222
>gi|33862400|ref|NP_893960.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9313]
gi|33640513|emb|CAE20302.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9313]
Length = 335
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 130/198 (65%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ +E+ L +Q+L+ LE L L + G + + A AAG+ + +L+++L G
Sbjct: 40 LLSHEQEITLGRQVQELMSLEQLESELEGQTGEPASRKELAKAAGLSELQLKKKLQSGRR 99
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K++M+++N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+WW
Sbjct: 100 AKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 159
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q + ++++++SRTIRLP H+ E ++K+ +++L E GR P E+AE L + +
Sbjct: 160 IRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQEMGRTPTVSELAEFVELPEEEV 219
Query: 406 HAVLLSPKAPRSLDQKIG 423
++ + P SL+ K+G
Sbjct: 220 KDLMCRARQPMSLEMKVG 237
>gi|434395299|ref|YP_007130246.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428267140|gb|AFZ33086.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 318
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 130/202 (64%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L+ ++E LS + PT +WAA+AG++ EL + + G +
Sbjct: 23 LLTHEQEILYGKQVQRSTALQEIKESLSAQLNREPTLEEWAASAGLESAELSKAIALGEI 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+A++QL + GR E+A LS K++
Sbjct: 143 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQQLGRAATVSELAAELELSPKQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G N +
Sbjct: 203 REYLERARLPLSLDLRVGDNHD 224
>gi|427717250|ref|YP_007065244.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427349686|gb|AFY32410.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 318
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 129/202 (63%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q L RE L+ + G PT +WA A ++ EL + G +
Sbjct: 23 LLTHEEEIFYGKQVQRATALHEAREYLAAQLGRQPTLEEWATTAKLESTELNDIIADGEI 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +++++++RTIRLP H+ E ++K+A++QL + GR P+ E+AE L+ K++
Sbjct: 143 IRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQKLGRAPSAGELAEELELTTKQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G N +
Sbjct: 203 REYLEKARLPLSLDLRLGDNYD 224
>gi|119513754|ref|ZP_01632741.1| Sigma 28 (Flagella/Sporulation) [Nodularia spumigena CCY9414]
gi|119461595|gb|EAW42645.1| Sigma 28 (Flagella/Sporulation) [Nodularia spumigena CCY9414]
Length = 327
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 125/202 (61%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +EE+ +Q ++ L ++ L++ P+ +WAA + ++E+ + + G
Sbjct: 32 LLTRDEEIIFGKQVQQMMTLLDAKQALAKELDHDPSLPEWAAQVNLPEKEVTQIVAQGKR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD ++G+KFSTYA+WW
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q RTIRLP H+ E ++K+ +++L + GR P E+A L ++
Sbjct: 152 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKFGRSPTPTEIAHELELEPMQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD K+G NQ+
Sbjct: 212 REYLNMARQPVSLDVKVGDNQD 233
>gi|218200736|gb|EEC83163.1| hypothetical protein OsI_28384 [Oryza sativa Indica Group]
Length = 537
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 96/283 (33%), Positives = 153/283 (54%), Gaps = 18/283 (6%)
Query: 157 EEQVSQSIAVRSRRQTERKARRTRAAEKAAANV-MSVKSGSTSRRKRPSVQEVDYSDPLR 215
E Q + VRS R ER+++R A + A+V S + + + + ++ +P +
Sbjct: 152 ELQSKGQVFVRSTRLLERRSKRRYAPRASIADVSCSADNSKKKEKSKKYGRVLEPDEPFK 211
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQD----------------LLKLEGLREVLSERCGGS 259
++ LTA EE L + IQ L+K+E L +CG
Sbjct: 212 LFLRDRETTEFLTAKEERHLFSKIQAKPYFYPVIFIFRTAQILMKIEEAHRKLEVQCGRE 271
Query: 260 PTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEG 319
PT A+WA A G+ +EL+ + G C++KM SN RLVI +A+ Y+G G+++QDLVQ+G
Sbjct: 272 PTLAEWAEAVGMSSKELQSSIRTGRRCREKMARSNFRLVIHVARKYEGYGLDIQDLVQDG 331
Query: 320 CRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARK 379
C GL++ EKF+ SKG +F TYA+WWI+Q+++KS+ SR IRLP + +V +AR
Sbjct: 332 CSGLMKTFEKFNPSKGCRFPTYAYWWIRQSIKKSIFKNSRLIRLPESVYALLRKVGKARM 391
Query: 380 QLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKI 422
+ E G P N VA G+++++L + + PRS+ +
Sbjct: 392 ECIME-GEQPTNANVARRAGITIEKLAKLRAKTRKPRSMQDHV 433
>gi|428211704|ref|YP_007084848.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
gi|428000085|gb|AFY80928.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
Length = 318
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 130/202 (64%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ L +Q L L ++E L+E+ G PT +W+ AAG+ EL++ + G
Sbjct: 23 LLTHEQEIVLGKQVQHLSLLHEMKETLTEQFGHEPTDVEWSQAAGLSLVELQQAIEQGET 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+A ++L + GR E+A LS K++
Sbjct: 143 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKASRELSQQLGRTATIGELAVELELSPKQI 202
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
+ + P SLD ++G N +
Sbjct: 203 REYMERARHPLSLDLRVGDNHD 224
>gi|334119483|ref|ZP_08493569.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333458271|gb|EGK86890.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 319
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 130/202 (64%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L +++L+E G PT A+WA A G+ + +L+R + G
Sbjct: 24 LLTHEQEILYGKQVQRSTALHQEKDILAEELGRDPTAAEWAQAVGLSEAQLQRTIEQGER 83
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K +M+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 84 AKRQMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 143
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+A++QL + GR E+A L+ K++
Sbjct: 144 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQQLGRAATAAELASELELTPKQI 203
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 204 REYLDRARLPLSLDLRVGDNQD 225
>gi|88808921|ref|ZP_01124430.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
gi|88786863|gb|EAR18021.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
Length = 322
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 130/199 (65%), Gaps = 1/199 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFA-QWAAAAGVDQRELRRRLNYGI 284
LL+ +E+ L +Q+L++LE + L E+ GG A + A AAG+ +L+R+L G
Sbjct: 25 LLSHQQEITLGRQVQELMELESVEAELQEKRGGEAVLAAELAKAAGLSAVQLKRKLQAGR 84
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+W
Sbjct: 85 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 144
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+Q + ++++++SRTIRLP H+ E ++K+ +++L E GR P+ E+A L
Sbjct: 145 WIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPSVTELASFVELPEDE 204
Query: 405 LHAVLLSPKAPRSLDQKIG 423
+ ++ + P SL+ K+G
Sbjct: 205 VKELMCRARQPVSLEMKVG 223
>gi|434396918|ref|YP_007130922.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428268015|gb|AFZ33956.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 368
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 131/199 (65%), Gaps = 1/199 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ-RELRRRLNYGI 284
LL EE++L+ ++ +++ E +R+ L E+ PT +W A ++ R+L RL G
Sbjct: 69 LLKPEEEVELANCVKVMVQAEEIRQQLKEQLNRQPTKEEWTKALQLESIRQLENRLYRGR 128
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
+ K KMI SN+RLV+SIAK Y G+ DL+QEG GL R EKFD +KG+KFSTYA+W
Sbjct: 129 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRATEKFDPNKGYKFSTYAYW 188
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+QA+ +++++ +RTIRLP H+VE ++K+A++ L + R+PN +E+A +S+ +
Sbjct: 189 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRNLKQQLQRNPNEQELANELNVSLSQ 248
Query: 405 LHAVLLSPKAPRSLDQKIG 423
LH +L + SL+ ++G
Sbjct: 249 LHQLLELRRQSLSLNHRVG 267
>gi|254413477|ref|ZP_05027247.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196179584|gb|EDX74578.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 331
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 128/202 (63%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L LE +E L E+ G PT +WA A+ + + EL+ + G
Sbjct: 35 LLTHEQEILYGKQVQRLNALEQTKESLFEQLGYEPTLCEWAKASSLSEAELQSCIRAGQT 94
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 95 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 154
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+A++QL GR E+A L+ K++
Sbjct: 155 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQTLGRAATISELATELDLTPKQV 214
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 215 REYLEKARQPLSLDLRVGDNQD 236
>gi|428320421|ref|YP_007118303.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428244101|gb|AFZ09887.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 334
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 83/202 (41%), Positives = 126/202 (62%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q ++KL ++ L++ T +WAA + + EL R L+ G
Sbjct: 39 LLTREEEIVFGKQVQQMMKLIEAKQALAKEWQRDLTNQEWAAEMELTEPELSRILHIGRR 98
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 99 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 158
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ +RTIRLP H+ E ++K+ +++L + GR P+ E+A A L ++
Sbjct: 159 IRQAITRAIAQHARTIRLPIHITEKLNKIKKVQRELTQQLGRSPSPGEIATALELHPSQI 218
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
LL + P SLD ++G NQ+
Sbjct: 219 REYLLMARHPVSLDLRVGDNQD 240
>gi|443309777|ref|ZP_21039464.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442780170|gb|ELR90376.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 319
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 84/203 (41%), Positives = 130/203 (64%), Gaps = 1/203 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV-DQRELRRRLNYGI 284
LLT +E+ +Q L L+ +RE L G PT +WA A+ + D EL + + G
Sbjct: 23 LLTHEQEILYGKQVQRLSALQTVREALLAEYGQEPTPDEWAKASDLADSEELAKIIAAGE 82
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
L K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+W
Sbjct: 83 LAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYW 142
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+QA+ ++++++ RTIRLP H+ E ++K+A++QL + GR P E+A L+ K+
Sbjct: 143 WIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQKLGRAPTAGELATELELTTKQ 202
Query: 405 LHAVLLSPKAPRSLDQKIGINQN 427
+ L + P SLD ++G NQ+
Sbjct: 203 VREYLERARLPLSLDLRVGDNQD 225
>gi|113954287|ref|YP_730230.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
gi|113881638|gb|ABI46596.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
Length = 318
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 130/199 (65%), Gaps = 1/199 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTF-AQWAAAAGVDQRELRRRLNYGI 284
LL+ +E+ L +Q+L+ LE L L ++ GG +WA AAG+ +L+R+L G
Sbjct: 22 LLSHQQEITLGRQVQELMDLEALEAELKDQRGGEEVARDEWAKAAGMSAAQLKRKLQAGR 81
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+W
Sbjct: 82 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 141
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+Q + ++++++SRTIRLP H+ E ++K+ +++L E GR P+ E+A L +
Sbjct: 142 WIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPSVTELASFVELPEEE 201
Query: 405 LHAVLLSPKAPRSLDQKIG 423
+ ++ + P SL+ K+G
Sbjct: 202 VKDLMCRARQPVSLEMKVG 220
>gi|428225416|ref|YP_007109513.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427985317|gb|AFY66461.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 327
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 85/234 (36%), Positives = 137/234 (58%), Gaps = 4/234 (1%)
Query: 194 SGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLS 253
+ + + RP++ ++D +R LLT +E+ +Q ++ L +E ++
Sbjct: 4 ANTVENKNRPTL----HTDMVRTYLHEIGRVPLLTHEQEIIYGKQVQQMMALLQKQEAIA 59
Query: 254 ERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQ 313
E G P+ +WA + + +L + L G K KMI +N+RLV+SIAK YQ +
Sbjct: 60 ETLGREPSQQEWAEGVQLSEADLAKALKQGQRAKQKMIEANLRLVVSIAKKYQKRNLEFL 119
Query: 314 DLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYR 373
DL+QEG GL RG EKFD S+G+KFSTYA+WWI+QA+ ++++ Q+RTIRLP H+ E +
Sbjct: 120 DLIQEGTLGLERGVEKFDPSRGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNK 179
Query: 374 VKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
+K +++L + GR E+AEA L +++ L + P SLD ++G NQ+
Sbjct: 180 IKRTQRELAQKFGRSATPAEIAEALELETEQIREYLTISRQPISLDVRVGDNQD 233
>gi|427737532|ref|YP_007057076.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427372573|gb|AFY56529.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 330
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 131/217 (60%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+D +R LL+ EE+ + ++ L++L ++E L+E+ P+ + WA A
Sbjct: 20 TDTVRSFLVQIGRVPLLSREEEIFFAQRVKQLMELLQVKEDLTEKSSSEPSLSTWANAVE 79
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
+ +L+ L+ G + + KMI +N+RLV++IAK YQ + DL+QEG GL RG EKF
Sbjct: 80 MTPTQLQETLDNGEIARQKMIEANLRLVVAIAKKYQHRNLEFVDLIQEGTLGLQRGVEKF 139
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D KG+KFSTYA+WWI+QA+ ++L +SR+IRLP H+ + ++K+AR+ L + GR+P
Sbjct: 140 DPDKGYKFSTYAYWWIRQAITRALDQKSRSIRLPIHVCQTLKKIKKARRDLTQQLGRNPT 199
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
E++ L ++ L + P SLD ++G Q+
Sbjct: 200 ISEISSHVSLKPAQIQDYLHMSRQPVSLDLRVGEGQD 236
>gi|428207075|ref|YP_007091428.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428008996|gb|AFY87559.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 330
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 122/202 (60%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E L ++ PT +W A + EL + G
Sbjct: 35 LLTREQEIVYGKQVQQMMALLDAKEALVKKLRREPTMEEWTAKVNTSEAELNDLIRKGQR 94
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 95 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTMGLERGVEKFDPIRGYKFSTYAYWW 154
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+RTIRLP H+ E ++K+ +++L GR PN E+AEA L ++
Sbjct: 155 IRQAITRAIAQQARTIRLPIHITEKLNKIKKVQRELAQTLGRSPNAVEIAEALELEPAQI 214
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 215 REYLNLARQPVSLDVRVGDNQD 236
>gi|434386344|ref|YP_007096955.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428017334|gb|AFY93428.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 326
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 125/202 (61%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ +E+ +Q ++ L+G+ E L + PT +WA AA + + EL R L G
Sbjct: 31 LLSHEQELCYGKQVQQMMLLKGIEESLEQTLNRPPTKTEWAQAATISEAELDRVLRQGRQ 90
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ + DL+QEG GL RG EKFD S+G+KFSTYA+WW
Sbjct: 91 AKQKMIEANLRLVVAIAKKYQKRNLEFLDLIQEGSLGLERGVEKFDPSRGYKFSTYAYWW 150
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q R+IRLP H+ E ++K+ +++L + GR + E+A A L ++
Sbjct: 151 IRQAITRAIAQQGRSIRLPIHITEKLNKIKKTQRELSQQLGRSATSAEIAVALELEPAQI 210
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD K+G Q+
Sbjct: 211 RDYLTLSRQPISLDAKVGDRQD 232
>gi|427736788|ref|YP_007056332.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427371829|gb|AFY55785.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 327
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 126/202 (62%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++KL +E L+++ G + +W G+ + EL++ + G
Sbjct: 32 LLTREQEIIFGKQVQKMMKLVEAKEALAKKLGREVSLEEWTQEVGLAETELKKTVLEGKR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD ++G+KFSTYA+WW
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGALGLERGVEKFDPTRGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q RTIRLP H+ E ++K+ +++L + GR P E+A+ L ++
Sbjct: 152 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPIPSEIAKELDLEPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 212 REYLNMARQPVSLDVRVGDNQD 233
>gi|334118426|ref|ZP_08492515.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333459433|gb|EGK88046.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 334
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 83/202 (41%), Positives = 126/202 (62%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q ++KL ++ L++ T +WAA + + EL R L+ G
Sbjct: 39 LLTREEEIVFGKQVQQMMKLIEAKQALAKEWQRDLTNQEWAAEMELTEPELSRILHIGRR 98
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 99 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 158
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ +RTIRLP H+ E ++K+ +++L + GR P+ E+A A L ++
Sbjct: 159 IRQAITRAIAQHARTIRLPIHITEKLNKIKKVQRELTQQLGRSPSPGEIAAALELHPSQI 218
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
LL + P SLD ++G NQ+
Sbjct: 219 REYLLMARHPVSLDLRVGDNQD 240
>gi|440680165|ref|YP_007154960.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428677284|gb|AFZ56050.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 327
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 123/202 (60%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E LS++ G P+ +WA + E+ + + G
Sbjct: 32 LLTREQEIVYGKQVQQMMTLLDAKEALSKKLGHEPSLTEWATHVNQSENEVTQTVTQGKR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q RTIRLP H+ E ++K+ +++L + GR P E+A+ L ++
Sbjct: 152 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPTPTEIAKELELEPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 212 REYLNMARQPVSLDVRVGDNQD 233
>gi|428205040|ref|YP_007100666.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428013159|gb|AFY91275.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 335
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 128/202 (63%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ +E+ +Q ++ L +E L+++ PT +WA + + L+++L G
Sbjct: 39 LLSHEQEIVFGKQVQQMIALVTAKENLAKQLQREPTLQEWAELMHLSDKALQKQLLAGQQ 98
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV+++AK YQ ++ DL+QEG GL RG EKFD ++GF+FSTYA+WW
Sbjct: 99 AKQKMIEANLRLVVAVAKKYQKRNLDFLDLIQEGTLGLERGVEKFDPTRGFRFSTYAYWW 158
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q V ++++ QSRTIRLP HM E ++K +++L + GR P + E+AEA L +++
Sbjct: 159 IRQGVTRAIAQQSRTIRLPIHMTEKLNKIKRTQRELSQKLGRTPTSIEIAEAIDLQPEQV 218
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
LL + P SL+ +IG Q+
Sbjct: 219 RECLLLARHPISLEARIGDEQD 240
>gi|300865041|ref|ZP_07109868.1| RNA polymerase sigma factor [Oscillatoria sp. PCC 6506]
gi|300336978|emb|CBN55018.1| RNA polymerase sigma factor [Oscillatoria sp. PCC 6506]
Length = 334
Score = 167 bits (423), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 125/202 (61%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q +++L +E L++ PT +WA + + EL+R ++ G
Sbjct: 39 LLTREQEIIYGKQVQQMMQLLEAKEELAKELRREPTEVEWALQVQLSEAELKRLMHQGRR 98
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 99 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 158
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ +RTIRLP H+ E ++K+ +++L + GR P E+ A L ++
Sbjct: 159 IRQAITRAIAQHARTIRLPIHITEKLNKIKKVQRELAQQLGRSPTPAEIGSALELHPSQI 218
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
LL + P SLD ++G NQ+
Sbjct: 219 REYLLMARHPVSLDLRVGDNQD 240
>gi|428770800|ref|YP_007162590.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428685079|gb|AFZ54546.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 332
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 84/220 (38%), Positives = 130/220 (59%)
Query: 208 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
V+ D +R LL+ +E+ +Q ++ L ++E L + T +WA
Sbjct: 18 VNTVDMVRTYLQEIGKVPLLSHEQEIVFGKQVQQMMSLYEVKENLEKNLEREVTLEEWAQ 77
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
A E+++ ++ G K KMI +N+RLV++IAK YQ M DL+QEG GL RG
Sbjct: 78 KADKTPNEVKKIIHQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGV 137
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
EKFD +KGFKFSTYA+WWI+QA+ ++++ Q+RTIRLP H+ E ++K+ +++L + GR
Sbjct: 138 EKFDPTKGFKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQKLGR 197
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
P+ E+AEA L ++ + P SLD K+G NQ+
Sbjct: 198 SPSPNEIAEALQLEPAQIREYFSIARQPISLDVKVGDNQD 237
>gi|298490639|ref|YP_003720816.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298232557|gb|ADI63693.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 327
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 126/202 (62%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +EVL+++ P+ +WAA + E+++ + G
Sbjct: 32 LLTREQEIVYGKQVQQMMTLLDAKEVLAKKLDHEPSLPEWAAHVNQSETEVKQTVAQGKR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q RTIRLP H+ E ++K+ +++L + GR P+ E+A+ L ++
Sbjct: 152 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPSPTEIAKELELEPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 212 REYLNMARQPVSLDVRVGDNQD 233
>gi|219111033|ref|XP_002177268.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411803|gb|EEC51731.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 324
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/196 (45%), Positives = 122/196 (62%)
Query: 224 SRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYG 283
+ LLTA+EE L IQ ++K E + E LS + PT +WAAA G + +
Sbjct: 9 TELLTADEEYSLGMKIQFMIKCELVHEGLSSKLMRLPTIEEWAAACGGTATDFVEMVMTS 68
Query: 284 ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH 343
K +M+ SN+RLV+SIA+ Y G++LQDLVQEG GL R AEKF+ KGFKFSTYA
Sbjct: 69 REAKQRMVQSNMRLVVSIARKYSNVGVSLQDLVQEGSLGLSRAAEKFEPKKGFKFSTYAS 128
Query: 344 WWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMK 403
WWI+QAV +S++ SRTIRLP H+ RV++ R L E R P NEE+AE G++++
Sbjct: 129 WWIQQAVFRSIAYHSRTIRLPVHVHNLLNRVRKVRNNLQRELSRTPTNEEMAEELGMTLQ 188
Query: 404 RLHAVLLSPKAPRSLD 419
+ + +L K SL+
Sbjct: 189 KYNKMLRLTKRSISLE 204
>gi|427421683|ref|ZP_18911866.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425757560|gb|EKU98414.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 318
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 129/202 (63%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q + L+ R L P+ +WA AAG+ EL + ++ G L
Sbjct: 23 LLTHEQEVVYGKQVQRFVALQAYRTKLEASLEREPSKLEWAEAAGISVDELTQAMDAGDL 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K +M+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD KG++FSTYA+WW
Sbjct: 83 AKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPLKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++SRTIRLP H+ E ++K+A++QL + GR E+AE L+ K++
Sbjct: 143 IRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQKLGRAATVAELAEEVKLTPKQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L ++P SLD +IG NQ+
Sbjct: 203 RDYLEKSRSPLSLDLRIGDNQD 224
>gi|6463980|dbj|BAA86957.1| group 2 sigma factor RpoD3 [Synechococcus sp. PCC 7942]
Length = 320
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/223 (42%), Positives = 141/223 (63%), Gaps = 4/223 (1%)
Query: 207 EVDYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL-SERCGGSPTFAQ 264
E SD +R YLR LLT EE+ L +Q +KL+ LR+ L SE P+ +
Sbjct: 5 ETPTSDLVRTYLREIGRVP-LLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLE 63
Query: 265 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV 324
WAAAAG+ ELR++ + G K KMI +N+RLV+S+AK Y M+L DL+QEG G+
Sbjct: 64 WAAAAGLSIEELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLKRNMDLLDLIQEGTIGMQ 123
Query: 325 RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSE 384
RG EKFD +KG++FSTYA+WWI+QA+ +++++++RTIRLP H+ E ++K+ ++QL S+
Sbjct: 124 RGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKMQRQL-SQ 182
Query: 385 NGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
E+A A L+ ++ L + P SLD ++G NQ+
Sbjct: 183 QLSTATLPELAAALDLTPAQVRDYLEKARHPLSLDLRVGDNQD 225
>gi|427735339|ref|YP_007054883.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427370380|gb|AFY54336.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 339
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 127/202 (62%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT+ EE+ L+ +Q + L ++E LS++ PT +W+ A ++ EL +++ G
Sbjct: 44 LLTSEEEINLAKKVQQRMSLLAIKEELSKKLQRQPTLQEWSDKAQLNDTELLEQIDRGQR 103
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ ++ DL+QEG GL R +KF + G+KFSTYA+WW
Sbjct: 104 AKQKMIAANLRLVVTIAKKYQKRNLDFLDLIQEGTLGLERAVDKFQPALGYKFSTYAYWW 163
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q + +++S QSRTIRLP H+ E ++K +++L + GR+P+ E+AE + ++
Sbjct: 164 IRQGITRAISQQSRTIRLPIHITEKLNKIKRVQRELSQKLGRNPSVTEIAEVMEVKPSQI 223
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G QN
Sbjct: 224 RDYLSLARKPMSLDVRVGEEQN 245
>gi|428315679|ref|YP_007113561.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428239359|gb|AFZ05145.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 319
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 129/202 (63%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L + +L+E G PT A+WA A G+ + +L+R + G
Sbjct: 24 LLTHEQEILYGKQVQRSTALHQEKNILAEELGRDPTAAEWAQAVGLSEAQLQRTIEQGER 83
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K +M+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 84 AKRQMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 143
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+A++QL + GR E+A L+ K++
Sbjct: 144 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQQLGRAATAAELASELELTPKQI 203
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 204 REYLDRARLPLSLDLRVGDNQD 225
>gi|113477826|ref|YP_723887.1| RNA polymerase subunit sigma 28 [Trichodesmium erythraeum IMS101]
gi|110168874|gb|ABG53414.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 384
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 133/219 (60%)
Query: 209 DYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAA 268
D D + L S LL EE++L+ IQ+L+ E L E L+ G +PT ++ A A
Sbjct: 67 DIDDAVGALFKQMSRYPLLNQKEEIELAKLIQELVVFEKLPEKLANDLGRTPTKSEVAVA 126
Query: 269 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 328
AG + +L RL+ K +MI+SN+RLV+SIAK Y G+ DL+QEG GL R AE
Sbjct: 127 AGFTESQLDHRLHQCRTAKRRMISSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAE 186
Query: 329 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH 388
KFD KG+KFSTYA+WWI+Q + +++++Q RTIRLP H+VE +++ + L R
Sbjct: 187 KFDPDKGYKFSTYAYWWIRQGITRTIANQGRTIRLPVHVVEQINKLRRVYRDLRRSLNRI 246
Query: 389 PNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
PN+ E+A+ +S+ +L + + SL+ ++G ++N
Sbjct: 247 PNDTEIAQELEISLPQLRNLQQIRRKTLSLNHRLGTDEN 285
>gi|434406935|ref|YP_007149820.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428261190|gb|AFZ27140.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 349
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 128/202 (63%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q L +RE L+ + G P +WAAA ++ L + G +
Sbjct: 54 LLTHEEEIFYGKQVQRATALHEVREFLATQLGRQPNLEEWAAATKLETTALNEAIADGEI 113
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 114 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 173
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +++++++RTIRLP H+ E ++K+A++QL + GR P E+A+ L+ K++
Sbjct: 174 IRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQQLGRAPTAAELAQELELTPKQV 233
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G N +
Sbjct: 234 REYLEKARLPLSLDLRLGDNYD 255
>gi|427731958|ref|YP_007078195.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427367877|gb|AFY50598.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 318
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 128/202 (63%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q L+ +RE L+ + PT +WA AA +D EL + G
Sbjct: 23 LLTHEEEIFYGKQVQRSSSLQEVREDLASKLDRQPTLEEWAKAAELDIAELNEAIADGEF 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +++++++RTIRLP H+ E ++K+A++QL GR P+ E+A L+ K++
Sbjct: 143 IRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQRLGRAPSASELASELELTPKQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G N +
Sbjct: 203 REYLEKARLPLSLDLRLGDNYD 224
>gi|257058077|ref|YP_003135965.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8802]
gi|256588243|gb|ACU99129.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 375
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 84/172 (48%), Positives = 118/172 (68%), Gaps = 1/172 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 284
LL A EE++L+ +Q L++ E R+ L E PT AQWA A G D QR+ RL G
Sbjct: 76 LLEAQEEIELAYSVQFLVEAEQKRQQLLEELQHPPTKAQWAQAMGFDSQRQFENRLYRGR 135
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+W
Sbjct: 136 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 195
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAE 396
WI+QA+ +++++ +RTIRLP H+VE ++K+A++ L + R+PN +E+A+
Sbjct: 196 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQKLQRNPNEKELAQ 247
>gi|218245053|ref|YP_002370424.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8801]
gi|218165531|gb|ACK64268.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
Length = 375
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 84/172 (48%), Positives = 118/172 (68%), Gaps = 1/172 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 284
LL A EE++L+ +Q L++ E R+ L E PT AQWA A G D QR+ RL G
Sbjct: 76 LLEAQEEIELAYSVQFLVEAEQKRQQLLEELQHPPTKAQWAQAMGFDSQRQFENRLYRGR 135
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+W
Sbjct: 136 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 195
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAE 396
WI+QA+ +++++ +RTIRLP H+VE ++K+A++ L + R+PN +E+A+
Sbjct: 196 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQKLQRNPNEKELAQ 247
>gi|440682243|ref|YP_007157038.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428679362|gb|AFZ58128.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 318
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 129/202 (63%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE++ +Q L +RE L+ + P +WAAAA ++ EL + G
Sbjct: 23 LLTHEEEIRYGKQVQRCTALYEVRENLATQLDRQPNLEEWAAAAQIELVELNEAIAEGET 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +++++++RTIRLP H+ E ++K+A++QL + GR P E+A+ L+ K++
Sbjct: 143 IRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQKLGRAPTATELAQELELTPKQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G N +
Sbjct: 203 QECLEKARLPLSLDLRLGDNYD 224
>gi|428203741|ref|YP_007082330.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427981173|gb|AFY78773.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 328
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 125/202 (61%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E L+ + G P+ +WA + + EL R + G
Sbjct: 32 LLTHEQEIVYGKQVQRMMTLLEKKEELASKLGHEPSLTEWANYVQLGEDELNRAIAQGNR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+RTIRLP H+ E ++K+ +++L + GR E+A+A L ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELAQQLGRSATPGEIAQALDLEPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 212 REYLSMARQPVSLDVRVGDNQD 233
>gi|443316147|ref|ZP_21045603.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442784247|gb|ELR94131.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 318
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 129/202 (63%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ ++ ++ + LRE L E G P++A WA G+D L+ ++ G
Sbjct: 22 LLTHEQEINYGKQVKQMMVVLALREDLMEPLGAEPSWAAWAEETGLDVETLQAQVAAGEA 81
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV+SIAK Y ++L DLVQEG GL R EKFD +KG++FSTYA+WW
Sbjct: 82 AKSKMIEANLRLVVSIAKKYTDRNLDLLDLVQEGSIGLNRAVEKFDPAKGYRFSTYAYWW 141
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++SRT+RLP H+ E +VK A++QL + GR + EEV+ L+ +++
Sbjct: 142 IRQAMTRAIAEKSRTVRLPIHVTETINKVKRAQRQLSQQLGRMASVEEVSTFLDLTSQQV 201
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SL+ ++G N +
Sbjct: 202 RDSLRHARRPLSLETRVGENND 223
>gi|428768890|ref|YP_007160680.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428683169|gb|AFZ52636.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 363
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 147/240 (61%), Gaps = 6/240 (2%)
Query: 185 AAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLK 244
A +V+ SG+ SRR++ ++ D + + LL+A EE+ L+ ++ L
Sbjct: 28 AHFSVIEDDSGTKSRRQKTKIE-----DSIGSFFKEMARYPLLSAEEEVNLAYAVKFLSD 82
Query: 245 LEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGILCKDKMITSNIRLVISIAK 303
E ++ L + +P+ + A A G++ +R+L RL G K KMI SN+RLV+SIAK
Sbjct: 83 CEEKQQELHRQLERTPSKMELAKAMGLESERQLDNRLYKGRTAKRKMIRSNLRLVVSIAK 142
Query: 304 NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 363
Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+WWI+QA+ +++++ SRTIRL
Sbjct: 143 RYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIRQAITRTIANDSRTIRL 202
Query: 364 PFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
P H+VE ++K+A++ L + R P +E+AE G++ + LH +L + SL+ ++G
Sbjct: 203 PIHIVEKLNKLKKAQRILKQDLQRQPTEKELAEEMGITRQALHQLLQLKRQSLSLNHRVG 262
>gi|218439771|ref|YP_002378100.1| RNA polymerase sigma factor [Cyanothece sp. PCC 7424]
gi|218172499|gb|ACK71232.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 328
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 131/226 (57%), Gaps = 1/226 (0%)
Query: 203 PSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPT 261
P Q+ +S D +R LLT +E+ +Q ++ L ++ L+ G P
Sbjct: 8 PKTQKPTFSADMVRTYLHEIGRVPLLTHEQEIVYGKQVQKMMTLLEKKDQLAIELGKEPN 67
Query: 262 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCR 321
+WA + + EL R + G K KMI +N+RLV++IAK YQ M DL+QEG
Sbjct: 68 LTEWANQVQMSEEELNRAIQQGKRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSL 127
Query: 322 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL 381
GL RG EKFD +KG+KFSTYA+WWI+QA+ ++++ Q+RTIRLP H+ E ++K+ +++L
Sbjct: 128 GLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQREL 187
Query: 382 YSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
+ GR E+A+A L ++ L + P SLD ++G NQ+
Sbjct: 188 SQQLGRSATPAEIAKALDLEPAQIREFLSMSRQPISLDVRVGDNQD 233
>gi|443663597|ref|ZP_21133167.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
gi|159027100|emb|CAO89285.1| rpoD [Microcystis aeruginosa PCC 7806]
gi|443331874|gb|ELS46514.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
Length = 328
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 123/202 (60%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E LS++ G P +WA + + + EL R L G
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQHLEWADSVNLSENELDRALKTGDR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+RTIRLP H+ E ++K +++L + GR E+A L ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAEIALELDLEPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 212 REYLSMARQPISLDVRVGDNQD 233
>gi|119511025|ref|ZP_01630145.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
gi|119464276|gb|EAW45193.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
Length = 332
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 130/202 (64%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+Q +Q L +R+ L + G P+ +WA AA ++ EL + G
Sbjct: 37 LLTHEEEIQYGKQVQFSRILHEVRDSLINQIGREPSLEEWALAANLEVAELNDAIADGET 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 97 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 156
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +++++++RTIRLP H+ E ++K+A++QL + GR P+ E+A+ L+ K++
Sbjct: 157 IRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQQLGRAPSAAELAQELDLTPKQV 216
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G N +
Sbjct: 217 REYLERARLPLSLDLRLGDNYD 238
>gi|427724985|ref|YP_007072262.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427356705|gb|AFY39428.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 373
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 130/199 (65%), Gaps = 1/199 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ-RELRRRLNYGI 284
LL +EE+QL+ ++ L E R L+E G SP+ +WAA + REL +L G
Sbjct: 74 LLKPDEEIQLAHSVKFLNDAEEKRLALTEELGRSPSKEEWAAVLKIATIRELNSQLYKGR 133
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
+ K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+W
Sbjct: 134 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 193
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+QA+ +++++ +RTIRLP H+VE ++K+A++ L + R+P+ E+A+ +S +
Sbjct: 194 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRTLKQKLQRNPSETELAQELDISADQ 253
Query: 405 LHAVLLSPKAPRSLDQKIG 423
LH +L + SL+ ++G
Sbjct: 254 LHHLLQLRRQSLSLNHRVG 272
>gi|354565375|ref|ZP_08984550.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353549334|gb|EHC18776.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 327
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 125/202 (61%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E L ++ P+ +WAA + E+++ + G
Sbjct: 32 LLTREQEIVYGKQVQQMMTLLDAKEALVKKLRREPSLEEWAAHVKKSESEVKQTVQQGKR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD ++G+KFSTYA+WW
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q RTIRLP H+ E ++K+ +++L + GR P+ E+A+ L ++
Sbjct: 152 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPSPAEIAQELELEPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD K+G NQ+
Sbjct: 212 REYLNMARQPVSLDVKVGDNQD 233
>gi|67924587|ref|ZP_00518002.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|67853561|gb|EAM48905.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
Length = 328
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 124/202 (61%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ +E L+++ G PT +W+ ++Q+ L + L G
Sbjct: 32 LLTHEQEIIYGKQVQKMMNFLEKKEELADKLGKEPTVKEWSKELEIEQKALNQALEQGER 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ QSRTIRLP H+ E ++K+ +++L GR E+A+ + ++
Sbjct: 152 IRQAITRAIAQQSRTIRLPIHITEKLNKIKKTQRELSQTLGRSATPSEIAQELEIEPSQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 212 REFLSIARQPISLDVRVGDNQD 233
>gi|87124760|ref|ZP_01080608.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
gi|86167639|gb|EAQ68898.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
Length = 321
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 131/199 (65%), Gaps = 1/199 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLR-EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 284
LL+ +E+ L +Q+L++LE L E+ +R G + A+ A AAG+ +L+R+L G
Sbjct: 25 LLSHQQEITLGRQVQELMELEALEAELRDQRGGEAVPAAELATAAGLSALQLKRKLQAGR 84
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+W
Sbjct: 85 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 144
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+Q + ++++++SRTIRLP H+ E ++K+ +++L E GR P E+A L +
Sbjct: 145 WIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTELAGFVELPEEE 204
Query: 405 LHAVLLSPKAPRSLDQKIG 423
+ ++ + P SL+ K+G
Sbjct: 205 VKDLMCRARQPVSLEMKVG 223
>gi|427709357|ref|YP_007051734.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427361862|gb|AFY44584.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 332
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 131/202 (64%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE++ +Q L+ +RE L+ + G PT +WA + +D +L + G +
Sbjct: 37 LLTHEEEIRYGKQVQRSTALQEVRESLASQLGREPTLEEWAKESKLDIADLNDAIADGEI 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K +M+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 97 AKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 156
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +++++++RTIRLP H+ E ++K+A++QL + GR P+ E+A L+ K++
Sbjct: 157 IRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQKLGRAPSVGELATELDLTPKQV 216
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G N +
Sbjct: 217 REYLEKARLPLSLDLRLGDNYD 238
>gi|428772429|ref|YP_007164217.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428686708|gb|AFZ46568.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 363
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 131/199 (65%), Gaps = 1/199 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 284
LLTA EE+ L+ ++ L E ++ L + +P+ + A A G++ +R+L RL G
Sbjct: 64 LLTAEEEVDLAQSVKFLTDCEETQQKLHHKLQRTPSKMELAHAMGLETERQLDNRLYKGR 123
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
+ K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+W
Sbjct: 124 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 183
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+QA+ +++++ SRTIRLP H+VE ++K+A+++L R+P E+AE G++ +
Sbjct: 184 WIRQAITRTIANDSRTIRLPIHIVEKLNKLKKAQRELKQSLQRNPTEVELAEEMGINEQA 243
Query: 405 LHAVLLSPKAPRSLDQKIG 423
LH +L + SL+ ++G
Sbjct: 244 LHQLLQLKRQSLSLNHRVG 262
>gi|86606677|ref|YP_475440.1| RNA polymerase sigma factor SigC [Synechococcus sp. JA-3-3Ab]
gi|86555219|gb|ABD00177.1| RNA polymerase sigma-70 factor family [Synechococcus sp. JA-3-3Ab]
Length = 364
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 84/211 (39%), Positives = 134/211 (63%), Gaps = 11/211 (5%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG-------VDQRELRR 278
LL +EE+ L+ +QD +KL +R L + G PT A+WAA A + +L++
Sbjct: 58 LLGRDEEVALAQRVQDYMKLLDVRLRLQKELGREPTLAEWAARANQYPEWANLTPEKLQQ 117
Query: 279 RLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKF 338
G K+ MI +N+RLV+S+AK YQ G+ L DL+QEG GL R EKFD KG++F
Sbjct: 118 IQRIGKRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPKKGYRF 177
Query: 339 STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEAT 398
STYA+WWI+Q + ++++ QSRTIRLP H+ E ++K+A+++L E GR P E++A
Sbjct: 178 STYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKLSQEKGRTPTIEDIASEL 237
Query: 399 GLSMKRLHAVLLSPKAPR--SLDQKIGINQN 427
+++ ++ +L+ + PR SL+ K+G +++
Sbjct: 238 EMTVPQVRELLV--RVPRSVSLETKVGKDKD 266
>gi|19910026|dbj|BAB87264.1| RNA polymerase sigma factor [Cyanophora paradoxa]
Length = 427
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 130/214 (60%), Gaps = 2/214 (0%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SD S LL+A EE++LS I+DL++LE +++ L+ R G P +WA AAG
Sbjct: 102 SDSFNSFIKEVGSFELLSAEEEIELSRQIRDLVQLETVKKRLAARIGREPREDEWAMAAG 161
Query: 271 VDQRE-LRRRLNYGILCKDKMITSNIRLVISIAKNYQGA-GMNLQDLVQEGCRGLVRGAE 328
+ R+ G + +++ SN+R V+SIAK Y M LQDL+QEG GL++ AE
Sbjct: 162 TQPGPAFQSRILKGRRARARLVQSNLRWVVSIAKKYANKHTMPLQDLIQEGSIGLMKAAE 221
Query: 329 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH 388
+FD KGFKF TYA WWI+QA+ +SL DQ RTIRLP H+ ++ Y +K+ R+QL S GR
Sbjct: 222 RFDLDKGFKFLTYATWWIRQAIFRSLQDQGRTIRLPVHVHDSLYLIKKTRQQLASRLGRI 281
Query: 389 PNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKI 422
P EE+A+ + + RL + + P SL+ I
Sbjct: 282 PTPEELADELNIPVSRLAFITQAASLPISLESPI 315
>gi|166368031|ref|YP_001660304.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
gi|166090404|dbj|BAG05112.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 377
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 123/177 (69%), Gaps = 1/177 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 284
LL+A EE++L+ ++ L++ E +R+ L E PT +WA+A +D +R+L RL G
Sbjct: 78 LLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWASALQLDNERQLENRLYRGR 137
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+W
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLS 401
WI+QA+ +++++ +RTIRLP H+VE ++K+A++ L + R+PN E+AEA ++
Sbjct: 198 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQDLQRNPNERELAEALEMT 254
>gi|17158744|ref|NP_478255.1| group 2 sigma 70-type sigma factor [Nostoc sp. PCC 7120]
gi|17134693|dbj|BAB77251.1| group 2 sigma 70-type sigma factor [Nostoc sp. PCC 7120]
Length = 323
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 128/202 (63%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ S +Q ++ L+ +E L ++ P+ + A + + E++ G
Sbjct: 27 LLTHEEEIVYSKQVQQMMVLQKKKETLKKQLNHEPSQKELAKYVQLSEIEVKDIFQQGTQ 86
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV++IAK YQ + L DL+QEG GL RG EKFD ++G+KFSTYA+WW
Sbjct: 87 AKQKMMVANLRLVVAIAKKYQRRNLELMDLIQEGSLGLERGVEKFDPTRGYKFSTYAYWW 146
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I QA+ +++S QSRTIRLP H+ E + K+ +++L + R P+ +E+AE L+ ++
Sbjct: 147 ISQAMTRAISQQSRTIRLPIHITEKLNKFKKVQRELSQKLKRSPSADEIAEKMKLNPAQI 206
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
+L+ + P SLD+++G N++
Sbjct: 207 RELLMISRQPASLDKQVGDNED 228
>gi|166364164|ref|YP_001656437.1| RNA polymerase sigma factor [Microcystis aeruginosa NIES-843]
gi|166086537|dbj|BAG01245.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 328
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 123/202 (60%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E LS++ G P +WA + + + EL R L G
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLETKEALSKQLGREPDRLEWADSVNLSENELDRALKTGDR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+RTIRLP H+ E ++K +++L + GR E+A L ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAEIALELELEPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 212 REYLSMARQPISLDVRVGDNQD 233
>gi|17231302|ref|NP_487850.1| RNA polymerase sigma factor SigD [Nostoc sp. PCC 7120]
gi|8489797|gb|AAF75755.1|AF262216_2 group 2 sigma 70-type sigma factor D [Nostoc sp. PCC 7120]
gi|17132944|dbj|BAB75509.1| group 2 sigma 70-type sigma factor D [Nostoc sp. PCC 7120]
Length = 332
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 130/202 (64%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ EE++ +Q L+ +RE L+ + G P+ +WA AA ++ +L + G +
Sbjct: 37 LLSHEEEIRYGKQVQRSTTLQEMREELATQSGREPSVEEWAKAANLNPADLLEAIADGEI 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 97 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 156
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +++++++RTIRLP H+ E ++K+A++QL GR P E+A L+ K++
Sbjct: 157 IRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQRLGRAPTAGELANELELTPKQV 216
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G N +
Sbjct: 217 REYLEKARLPLSLDLRLGDNYD 238
>gi|354566206|ref|ZP_08985379.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353546714|gb|EHC16162.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 318
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 129/202 (63%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q L +RE+L+ + G PT +WA A ++ EL + + +
Sbjct: 23 LLTHEEEIFYGKQVQRATALHEVRELLATQLGREPTLEEWATATQLELTELNQAIADAEI 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+A++QL GR P+ E+A+ L+ +++
Sbjct: 143 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQRLGRAPSVAELAQELELTSRQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G N +
Sbjct: 203 REYLEKARVPLSLDIRLGDNYD 224
>gi|443311966|ref|ZP_21041588.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442778041|gb|ELR88312.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 327
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 123/202 (60%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E L+++ PT +WA + EL + G
Sbjct: 32 LLTREQEIIYGKQVQQMMSLLEAKEALAKQLHREPTSDEWATQVDIAAAELPETIKRGKR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTMGLERGVEKFDPMRGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+RTIRLP H+ E ++K+ +++L + GR PN E+A A L ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKKVQRELAQKLGRSPNANEIAIALELEPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 212 REYLNLARQPVSLDIRVGDNQD 233
>gi|254430889|ref|ZP_05044592.1| possible type II alternative RNA polymerase sigma factor [Cyanobium
sp. PCC 7001]
gi|197625342|gb|EDY37901.1| possible type II alternative RNA polymerase sigma factor [Cyanobium
sp. PCC 7001]
Length = 327
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 132/218 (60%), Gaps = 10/218 (4%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
SDP+R YLR LL EE+ L+ +Q+ E+L +R G T WA
Sbjct: 19 SDPIRLYLREIGRVD-LLRQEEEILLARLVQER------EELLRQRGDGELTA--WAGRC 69
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
GV +LR+ L+ G K++M+ +N+RLV+++AK YQ G++L DL+QEG GL R E+
Sbjct: 70 GVPPADLRQALHRGRRAKERMLQANLRLVVAVAKKYQRRGLDLLDLIQEGTLGLERAVER 129
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
+D +GF+FSTYA+WWI+Q + ++L+ QSRTIRLP H+ E R++ + +L E+GR P
Sbjct: 130 YDPRRGFRFSTYAYWWIRQGITRALASQSRTIRLPVHVTETLNRIRTCQGELTREHGRQP 189
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
E+A A GL RL + L P SL+ ++G N +
Sbjct: 190 TLAELARAVGLDEARLRSTLAHIPRPVSLEGRVGANAD 227
>gi|87123242|ref|ZP_01079093.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
gi|86168962|gb|EAQ70218.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
Length = 309
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 131/199 (65%), Gaps = 1/199 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLR-EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 284
LL+ +E+ L +Q+L++LE L E+ +R G + A+ A AAG+ +L+R+L G
Sbjct: 13 LLSHQQEITLGRQVQELMELEALEAELRDQRGGEAVPAAELATAAGLSALQLKRKLQAGR 72
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+W
Sbjct: 73 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 132
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+Q + ++++++SRTIRLP H+ E ++K+ +++L E GR P E+A L +
Sbjct: 133 WIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTELAGFVELPEEE 192
Query: 405 LHAVLLSPKAPRSLDQKIG 423
+ ++ + P SL+ K+G
Sbjct: 193 VKDLMCRARQPVSLEMKVG 211
>gi|443323268|ref|ZP_21052276.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442787006|gb|ELR96731.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 328
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 121/202 (59%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E L+++ G +WA +D EL + G
Sbjct: 32 LLTPEQEISYGKQVQKMMSLIEAKEKLNKQLGREANKQEWAQYVQMDPEELEKTQQKGQR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KGFKFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGFKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q RTIRLP H+ E ++K +++L GR+P+ E+A L ++
Sbjct: 152 IRQAITRAIAQQGRTIRLPIHITEKLNKIKRTQRELSQRLGRNPSPSEIARELELQPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 212 REYLSVARQPISLDVRVGDNQD 233
>gi|75908113|ref|YP_322409.1| RNA polymerase sigma factor SigD [Anabaena variabilis ATCC 29413]
gi|75701838|gb|ABA21514.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 332
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 130/202 (64%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ EE++ +Q L+ +RE L+ + G P+ +WA AA ++ +L + G +
Sbjct: 37 LLSHEEEIRYGKQVQRSTTLQEVREELATQLGREPSIEEWAKAANINSADLLGAIADGEV 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 97 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 156
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +++++++RTIRLP H+ E ++K+A++QL GR P E+A L+ K++
Sbjct: 157 IRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQRLGRAPTAGELANELELTPKQV 216
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G N +
Sbjct: 217 REYLEKARLPLSLDLRLGDNYD 238
>gi|416404726|ref|ZP_11687748.1| Cyanobacteria-specific RpoD-like sigma factor, type-3 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
gi|357261487|gb|EHJ10751.1| Cyanobacteria-specific RpoD-like sigma factor, type-3 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
Length = 328
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 124/202 (61%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ +E L+++ G PT +W+ ++Q+ L + L G
Sbjct: 32 LLTHEQEIIYGKQVQKMMNFLEKKEELADKLGKEPTVKEWSKELEIEQKALNQALEQGER 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+RTIRLP H+ E ++K+ +++L GR E+A+ + ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQTLGRSATPSEIAQELEIEPSQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 212 REFLSIARQPISLDVRVGDNQD 233
>gi|422302967|ref|ZP_16390325.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9806]
gi|425467050|ref|ZP_18846334.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9809]
gi|389792142|emb|CCI12123.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9806]
gi|389830277|emb|CCI27891.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9809]
Length = 328
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 123/202 (60%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E LS++ G P +WA + + + EL R L G
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPDRLEWADSVNLSENELDRALKTGDR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+RTIRLP H+ E ++K +++L + GR E+A L ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAEIALELELEPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 212 REYLSMARQPISLDVRVGDNQD 233
>gi|186685842|ref|YP_001869038.1| RNA polymerase sigma factor SigD [Nostoc punctiforme PCC 73102]
gi|186468294|gb|ACC84095.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 332
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 128/202 (63%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q L RE L+ + G PT +WA A ++ EL + G +
Sbjct: 37 LLTHEEEIFYGKQVQRSCTLHESRESLATQLGRQPTLEEWAKATKLEPVELNEAIADGEI 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 97 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 156
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +++++++RTIRLP H+ E ++K+A++QL + GR P E+A+ L+ K++
Sbjct: 157 IRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQKLGRAPTAGELAQELELTPKQV 216
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G N +
Sbjct: 217 REYLEKARLPLSLDLRLGDNYD 238
>gi|425469578|ref|ZP_18848501.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9701]
gi|389880547|emb|CCI38706.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9701]
Length = 328
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 123/202 (60%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E LS++ G P +WA + + + EL R L G
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPDRLEWADSVNLSENELDRALKTGDR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+RTIRLP H+ E ++K +++L + GR E+A L ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAEIALELELEPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 212 REYLSMARQPISLDVRVGDNQD 233
>gi|425440995|ref|ZP_18821285.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9717]
gi|389718430|emb|CCH97613.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9717]
Length = 328
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 123/202 (60%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E LS++ G P +WA + + + EL R L G
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQRLEWADSVNLSENELDRALKTGDR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+RTIRLP H+ E ++K +++L + GR E+A L ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAEIALELELEPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 212 REYLSMARQPISLDVRVGDNQD 233
>gi|425447335|ref|ZP_18827325.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9443]
gi|389732113|emb|CCI03895.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9443]
Length = 377
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 122/177 (68%), Gaps = 1/177 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 284
LL+A EE++L+ ++ L++ E +R+ L E PT +WA A +D +R+L RL G
Sbjct: 78 LLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+W
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLS 401
WI+QA+ +++++ +RTIRLP H+VE ++K+A++ L + R+PN E+AEA ++
Sbjct: 198 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQDLQRNPNERELAEALEMT 254
>gi|428307214|ref|YP_007144039.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428248749|gb|AFZ14529.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 318
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 130/202 (64%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L+ L ++ LS G P F+QWA A ++++EL++ + L
Sbjct: 23 LLTHEQEILYGKQVQRLVALRAVKSSLSAELGDEPNFSQWAQACELEEQELQQAIATAEL 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNIDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +++++++R IRLP H+ E ++K+A++ L + GR E+AE L+ ++
Sbjct: 143 IRQAITRAIAEKARAIRLPIHITEKLNKIKKAQRSLSQKLGRAATVTELAEELELTPPQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G +Q+
Sbjct: 203 REYLERARQPLSLDLRVGDHQD 224
>gi|220907004|ref|YP_002482315.1| RNA polymerase sigma factor [Cyanothece sp. PCC 7425]
gi|219863615|gb|ACL43954.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 327
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 124/202 (61%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ L +Q L++L RE L+ SPT +WA A + +L + G
Sbjct: 32 LLTHEQEIVLGKQVQQLMELLEAREKLTTSLDRSPTAEEWAEQANLSVADLNTAVRRGQR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV+S+AK YQ + L DL+QEG GL RG EKFD ++G+KFSTYA+WW
Sbjct: 92 AKQKMIEANLRLVVSVAKKYQKRNLELLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+RT+RLP H+ E ++K+A++ L GR E+A+ L ++
Sbjct: 152 IRQAITRAIAQQARTVRLPIHITEKLNKIKKAQRVLSQRLGRSATPAEIAQELELEPSQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 212 REYLTLARQPVSLDLRVGDNQD 233
>gi|409991559|ref|ZP_11274809.1| RNA polymerase sigma factor SigD [Arthrospira platensis str.
Paraca]
gi|409937568|gb|EKN78982.1| RNA polymerase sigma factor SigD [Arthrospira platensis str.
Paraca]
Length = 319
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 128/202 (63%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L+ R L+++ G PT AQWA + +L+ L+ G L
Sbjct: 24 LLTHEQEILYGKQVQQATLLQEKRNELAKQLGYEPTEAQWAELVNLSVAQLQHILHQGQL 83
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 84 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 143
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+A++QL + GR E+A L+ K++
Sbjct: 144 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQQLGRAATMNELAAELDLTPKQI 203
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 204 REYLEKSRLPLSLDLRVGDNQD 225
>gi|425435006|ref|ZP_18815466.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9432]
gi|425452052|ref|ZP_18831870.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 7941]
gi|425458612|ref|ZP_18838100.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9808]
gi|440755453|ref|ZP_20934655.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
gi|389675298|emb|CCH95580.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9432]
gi|389766335|emb|CCI08019.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 7941]
gi|389826317|emb|CCI23267.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9808]
gi|440175659|gb|ELP55028.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
Length = 328
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 123/202 (60%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E LS++ G P +WA + + + EL R L G
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQRLEWADSVNLSENELDRALKTGDR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+RTIRLP H+ E ++K +++L + GR E+A L ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAEIALELELEPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 212 REYLSMARQPISLDVRVGDNQD 233
>gi|148241197|ref|YP_001226354.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp.
RCC307]
gi|147849507|emb|CAK27001.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. RCC307]
Length = 324
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 92/243 (37%), Positives = 146/243 (60%), Gaps = 8/243 (3%)
Query: 196 STSRRKRPSVQEVDYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSE 254
+T+ +RP V D +R YLR LL+ +E+ L +Q+L++LE
Sbjct: 3 TTAVDQRPPVD----GDLVRSYLRDIGRVP-LLSHEQEITLGRQVQELVRLEEAEAEFKM 57
Query: 255 RCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQD 314
R G P+ + A++ G+ LRRRL G K++M+ +N+RLV+S+AK Y M L D
Sbjct: 58 RQGHEPSREELASSFGISPAVLRRRLINGRRAKERMVAANLRLVVSVAKKYTKRNMELLD 117
Query: 315 LVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRV 374
L+QEG GLVRG EKFD ++G+KFSTYA+WWI+Q + ++++++SRTIRLP H+ E ++
Sbjct: 118 LIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITETLNKL 177
Query: 375 KEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCF 434
K+ +++L E GR P E+AE L + +L + P SL+ K+G + + + +C
Sbjct: 178 KKGQRELSQELGRTPTVGELAEFLELPEPEVKDLLSRARQPVSLEMKVGDSDDTE--LCE 235
Query: 435 ILN 437
+L
Sbjct: 236 LLQ 238
>gi|282900289|ref|ZP_06308240.1| sigE (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281194794|gb|EFA69740.1| sigE (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 327
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 126/202 (62%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL +E+ +Q ++ L ++E L++ G P+ ++WA + +L+ +++ G
Sbjct: 32 LLNREQEIIYGKQVQQMMLLLEVKEALTKELGYEPSLSEWAIYVNQSENDLKHKISTGKR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD + G+KFSTYA+WW
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTMGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q RTIRLP H+ E ++K+ +++L + GR P+ E+A+ L ++
Sbjct: 152 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPSPTEIAKELELEPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 212 REYLNIARQPISLDVRVGDNQD 233
>gi|86610159|ref|YP_478921.1| RNA polymerase sigma factor SigC [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86558701|gb|ABD03658.1| RNA polymerase sigma-70 factor family [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 366
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 84/211 (39%), Positives = 132/211 (62%), Gaps = 11/211 (5%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG-------VDQRELRR 278
LL +EE+ L+ +QD +KL LR L + G PT A+W A A + +L++
Sbjct: 60 LLGRDEEVALAQKVQDYMKLLDLRLRLQKELGRDPTLAEWVAKANQYPEWAQLTPEKLQQ 119
Query: 279 RLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKF 338
G K+ MI +N+RLV+S+AK YQ G+ L DL+QEG GL R EKFD KG++F
Sbjct: 120 IQRIGKRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPKKGYRF 179
Query: 339 STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEAT 398
STYA+WWI+Q + ++++ QSRTIRLP H+ E ++K+A+++L E GR P E++A
Sbjct: 180 STYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKLSQEKGRTPTIEDIASEL 239
Query: 399 GLSMKRLHAVLLSPKAPR--SLDQKIGINQN 427
++ ++ +L+ + PR SL+ K+G +++
Sbjct: 240 EMTPPQVRELLV--RVPRSVSLETKVGKDKD 268
>gi|390437727|ref|ZP_10226255.1| RNA polymerase sigma factor rpoD [Microcystis sp. T1-4]
gi|389838859|emb|CCI30379.1| RNA polymerase sigma factor rpoD [Microcystis sp. T1-4]
Length = 378
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 121/177 (68%), Gaps = 1/177 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 284
LL A EE++L+ ++ L++ E +R+ L E PT +WA A +D +R+L RL G
Sbjct: 78 LLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+W
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLS 401
WI+QA+ +++++ +RTIRLP H+VE ++K+A++ L + R+PN E+AEA ++
Sbjct: 198 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQDLQRNPNERELAEALEMT 254
>gi|218247332|ref|YP_002372703.1| RNA polymerase sigma factor [Cyanothece sp. PCC 8801]
gi|218167810|gb|ACK66547.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
Length = 328
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 126/202 (62%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +++ L++ G P+ +WA A + + EL++ + G
Sbjct: 32 LLTHEQEIVYGKQVQRMMSLFEMKDQLTQAQGTEPSDKEWAKAVNLKEPELKKTIEQGNR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+RTIRLP H+ E ++K+ +++L + GR E+A + ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQKLGRSATPAEIAAVLEIEPSQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 212 RECLSMARQPISLDVRVGDNQD 233
>gi|172035560|ref|YP_001802061.1| RNA polymerase sigma factor [Cyanothece sp. ATCC 51142]
gi|354554809|ref|ZP_08974112.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171697014|gb|ACB49995.1| group 2 sigma-70 RNA polymerase sigma factor B [Cyanothece sp. ATCC
51142]
gi|353552963|gb|EHC22356.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 328
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 124/202 (61%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E L++ G P+ +WA ++++ L + L G
Sbjct: 32 LLTHEQEIIYGKQVQKMMSLLETKEELAQSLGKEPSLQEWAKEVNLEEKALTKALEQGER 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+RTIRLP H+ E ++K+ +++L GR E+A+ + ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQTLGRSATPAEIAQELEIEPSQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 212 REFLSIARQPISLDVRVGDNQD 233
>gi|425454900|ref|ZP_18834625.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9807]
gi|389804301|emb|CCI16819.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9807]
Length = 377
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 82/173 (47%), Positives = 120/173 (69%), Gaps = 1/173 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 284
LL+A EE++L+ ++ L++ E +R+ L E PT +WA A +D +R+L RL G
Sbjct: 78 LLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+W
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEA 397
WI+QA+ +++++ +RTIRLP H+VE ++K+A++ L + R+PN E+AEA
Sbjct: 198 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQDLQRNPNERELAEA 250
>gi|288923254|ref|ZP_06417393.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
gi|288345398|gb|EFC79788.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
Length = 400
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 92/221 (41%), Positives = 126/221 (57%), Gaps = 21/221 (9%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLL----KLEGLREVLSERCGGSPTFAQWA 266
SDP+R T RLLTA EE+ L+ I+ L KL R++ SP Q
Sbjct: 101 SDPVRMYLKTIGRVRLLTAAEEVDLAKRIEAGLFASEKLAATRKI-------SPQLRQDL 153
Query: 267 AAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 326
A D G + K K++ +N+RLV+SIAK Y G GM L DL+QEG GL+R
Sbjct: 154 QAVEQD----------GQIAKRKLVEANLRLVVSIAKRYVGRGMLLLDLIQEGNLGLIRA 203
Query: 327 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG 386
EKFD +KG+KFSTYA WWI+QAV ++L+DQ RTIR+P HM E +V ++QL E G
Sbjct: 204 VEKFDYTKGYKFSTYATWWIRQAVTRALADQGRTIRIPVHMAETVNKVTRIQRQLLQELG 263
Query: 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
R P+ EE+ L+ ++ +L + P +L+ IG Q+
Sbjct: 264 REPSPEEIGTQIDLTAHKVEEILKIAQTPVALETPIGAEQD 304
>gi|113954561|ref|YP_729335.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
gi|113881912|gb|ABI46870.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
Length = 335
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 129/199 (64%), Gaps = 1/199 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTF-AQWAAAAGVDQRELRRRLNYGI 284
LL+ +E+ L +Q+L+ LE L L ++ GG + A AAGV +L+R+L G
Sbjct: 39 LLSHQQEITLGRQVQELMDLEALEAELKDQRGGEEVAREEVAKAAGVSAAQLKRKLQAGR 98
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+W
Sbjct: 99 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 158
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+Q + ++++++SRTIRLP H+ E ++K+ +++L E GR P+ E+A L +
Sbjct: 159 WIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPSVTELASFVELPEEE 218
Query: 405 LHAVLLSPKAPRSLDQKIG 423
+ ++ + P SL+ K+G
Sbjct: 219 VKDLMCRARQPVSLEMKVG 237
>gi|425437461|ref|ZP_18817876.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9432]
gi|440756281|ref|ZP_20935482.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa TAIHU98]
gi|169883528|gb|ACA97859.1| RNA polymerase sigma factor [Microcystis aeruginosa PCC 7820]
gi|389677539|emb|CCH93515.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9432]
gi|440173503|gb|ELP52961.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa TAIHU98]
Length = 377
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 122/177 (68%), Gaps = 1/177 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 284
LL+A EE++L+ ++ L++ E +R+ L E PT +WA A +D +R+L RL G
Sbjct: 78 LLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+W
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLS 401
WI+QA+ +++++ +RTIRLP H+VE ++K+A++ L + R+PN E+AEA ++
Sbjct: 198 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQDLQRNPNERELAEALEIT 254
>gi|405983613|ref|ZP_11041918.1| RNA polymerase sigma factor RpoD [Slackia piriformis YIT 12062]
gi|404388428|gb|EJZ83510.1| RNA polymerase sigma factor RpoD [Slackia piriformis YIT 12062]
Length = 392
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 97/254 (38%), Positives = 138/254 (54%), Gaps = 19/254 (7%)
Query: 180 RAAEKAAANVMSVKSGSTSRRKRPSVQEVDY--SDPLRYLRATTSSSRLLTANEE----M 233
+AAE A N+ V + S+ R+R + V DP+R LLTA EE M
Sbjct: 55 KAAEDAEVNLPKVTTRSSKVRRRSADTSVTMLTGDPVRMYLKEIGKVPLLTAAEEIDLAM 114
Query: 234 QLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITS 293
++ AG+ +LE E E G+D K ++I +
Sbjct: 115 KIEAGVAATAELEKAEEEGIELERRERRRLTRVEQVGID-------------AKQQLIEA 161
Query: 294 NIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKS 353
N+RLV+SIAK Y G GM DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ ++
Sbjct: 162 NLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRA 221
Query: 354 LSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPK 413
++DQSRTIR+P HMVE ++ ++QL E GR P+ EE+ E GL+ +R+ + +
Sbjct: 222 IADQSRTIRIPVHMVETINKLVRIQRQLLQELGRDPSPEEIGEKMGLTAERVREIQKISQ 281
Query: 414 APRSLDQKIGINQN 427
P SL+ IG ++
Sbjct: 282 EPVSLETPIGEEED 295
>gi|33241240|ref|NP_876182.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
gi|33238770|gb|AAQ00835.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
Length = 328
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 127/202 (62%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ L +Q+L+ LE L L G P+ A AG+ REL +RL G+
Sbjct: 33 LLTNEQEITLGRQVQELISLEKLERELESTNGKKPSKEDLAIDAGISVRELSKRLKRGVR 92
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K++M+++N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+WW
Sbjct: 93 AKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYAYWW 152
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q + ++++++SR IRLP H+ E ++K+ +++L R P +E++ + ++ +
Sbjct: 153 IRQGITRAIAEKSRIIRLPIHITELLNKLKKGQRELSQHLERTPTMQELSAYVEIPVEEV 212
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
++ P SL+ K+G ++
Sbjct: 213 KDLMFRASQPVSLESKVGDGED 234
>gi|376005594|ref|ZP_09783057.1| group 2 RNA polymerase sigma factor SigD (RpoD family) [Arthrospira
sp. PCC 8005]
gi|375326028|emb|CCE18810.1| group 2 RNA polymerase sigma factor SigD (RpoD family) [Arthrospira
sp. PCC 8005]
Length = 331
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 128/202 (63%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L+ R L+++ G PT AQWA + +L+ L+ G L
Sbjct: 36 LLTHEQEIVYGKQVQQATLLQEKRNELAKQLGYEPTEAQWAELVNLSVAQLQHILHQGQL 95
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 96 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 155
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+A++QL + GR E+A L+ K++
Sbjct: 156 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQQLGRAATMNELAAELDLTPKQI 215
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 216 REYLEKSRLPLSLDLRVGDNQD 237
>gi|282899735|ref|ZP_06307698.1| sigD (sigma 28 (flagella/spoulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281195350|gb|EFA70284.1| sigD (sigma 28 (flagella/spoulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 332
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 89/242 (36%), Positives = 145/242 (59%), Gaps = 9/242 (3%)
Query: 187 ANVMSVKSGSTSRRKRPSVQEVDYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKL 245
AN+ S+ S + + P+ D +R YLR LLT +E+ +Q L
Sbjct: 5 ANLASLNSSAMKTAQTPT-------DIVRTYLREIGKVP-LLTHEQEIYYGKQVQKSTAL 56
Query: 246 EGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 305
++ L++ P+ +WA AA +D +EL R L G + K KM+ +N+RLV+S+AK Y
Sbjct: 57 YETKDNLAQELNRQPSLEEWAKAAQLDPQELNRLLGQGEIAKRKMVEANLRLVVSVAKKY 116
Query: 306 QGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF 365
++L DL+QEG G+ RG EKFD SKG++FSTYA+WWI+QA+ +++++++RTIRLP
Sbjct: 117 IKRNVDLLDLIQEGSIGMQRGVEKFDPSKGYRFSTYAYWWIRQAITRAIAEKARTIRLPI 176
Query: 366 HMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGIN 425
H+ E ++K+A++ L GR P+ E+A+ ++ K++ L + P SLD ++G N
Sbjct: 177 HITEKLNKIKKAQRYLSQTLGRSPSIAELAQELEITPKQVRDCLEKARLPLSLDLRLGDN 236
Query: 426 QN 427
+
Sbjct: 237 YD 238
>gi|209524631|ref|ZP_03273179.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|423064274|ref|ZP_17053064.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|209495089|gb|EDZ95396.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|406713517|gb|EKD08685.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 331
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 128/202 (63%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L+ R L+++ G PT AQWA + +L+ L+ G L
Sbjct: 36 LLTHEQEIVYGKQVQQATLLQEKRNELAKQLGYEPTEAQWAELVNLSVAQLQHILHQGQL 95
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 96 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 155
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+A++QL + GR E+A L+ K++
Sbjct: 156 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQQLGRAATMNELAAELDLTPKQI 215
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 216 REYLEKSRLPLSLDLRVGDNQD 237
>gi|425469001|ref|ZP_18847970.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9701]
gi|389884193|emb|CCI35494.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9701]
Length = 377
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 121/177 (68%), Gaps = 1/177 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 284
LL A EE++L+ ++ L++ E +R+ L E PT +WA A +D +R+L RL G
Sbjct: 78 LLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALQLDNERQLENRLYRGR 137
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+W
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLS 401
WI+QA+ +++++ +RTIRLP H+VE ++K+A++ L + R+PN E+AEA ++
Sbjct: 198 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQDLQRNPNERELAEALEMT 254
>gi|425440636|ref|ZP_18820934.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9717]
gi|389718887|emb|CCH97220.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9717]
Length = 377
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 82/173 (47%), Positives = 119/173 (68%), Gaps = 1/173 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 284
LL A EE++L+ ++ L++ E +R+ L E PT +WA A +D +R+L RL G
Sbjct: 78 LLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+W
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEA 397
WI+QA+ +++++ +RTIRLP H+VE ++K+A++ L + R+PN E+AEA
Sbjct: 198 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQDLQRNPNERELAEA 250
>gi|390440883|ref|ZP_10229079.1| RNA polymerase sigma factor rpoD2 [Microcystis sp. T1-4]
gi|389835810|emb|CCI33205.1| RNA polymerase sigma factor rpoD2 [Microcystis sp. T1-4]
Length = 328
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 122/202 (60%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E LS++ G P WA + + + EL R L G
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPDRLDWADSVNLSENELDRALKTGDR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+RTIRLP H+ E ++K +++L + GR E+A L ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAEIALELELEPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 212 REYLSMARQPISLDVRVGDNQD 233
>gi|425464726|ref|ZP_18844036.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9809]
gi|389833185|emb|CCI22530.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9809]
Length = 377
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 121/177 (68%), Gaps = 1/177 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 284
LL A EE++L+ ++ L++ E +R+ L E PT +WA A +D +R+L RL G
Sbjct: 78 LLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWANALQLDNERQLENRLYRGR 137
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+W
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLS 401
WI+QA+ +++++ +RTIRLP H+VE ++K+A++ L + R+PN E+AEA ++
Sbjct: 198 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQDLQRNPNERELAEALEMT 254
>gi|172035517|ref|YP_001802018.1| group 2 sigma-70 RNA polymerase sigma factor E [Cyanothece sp. ATCC
51142]
gi|354555605|ref|ZP_08974906.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171696971|gb|ACB49952.1| group 2 sigma-70 RNA polymerase sigma factor E [Cyanothece sp. ATCC
51142]
gi|353552664|gb|EHC22059.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 374
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 122/177 (68%), Gaps = 1/177 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 284
LL A EE++L+ +Q L++ E R+ L E SP+ A+WA A G + Q++ RL+ G
Sbjct: 75 LLNAEEEVELAHHVQFLVQAEETRQQLQEALQHSPSKAEWAKAMGFETQKQFEHRLHRGR 134
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+W
Sbjct: 135 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 194
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLS 401
WI+QA+ +++++ +RTIRLP H+VE ++K+A++ L + R+PN +E+A+ +S
Sbjct: 195 WIRQAITRTIANDARTIRLPIHVVEKLNKLKKAQRVLKQKLQRNPNEKELADELEVS 251
>gi|434402958|ref|YP_007145843.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428257213|gb|AFZ23163.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 327
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 125/202 (61%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E L+++ P+ +WAA + ++++ + G
Sbjct: 32 LLTREQEIVFGKQVQHMMTLLEAKEALAKKLRREPSLPEWAADVNQSETDVKQTVTQGKR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD ++G+KFSTYA+WW
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q RTIRLP H+ E ++K+ +++L + GR P E+A+ L ++
Sbjct: 152 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPTPVEIAKELELEPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 212 REYLNMARQPVSLDVRVGDNQD 233
>gi|257061333|ref|YP_003139221.1| RNA polymerase sigma factor [Cyanothece sp. PCC 8802]
gi|256591499|gb|ACV02386.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 328
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 126/202 (62%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +++ L++ G P+ +WA A + + EL++ + G
Sbjct: 32 LLTHEQEIVYGKQVQRMMSLFEMKDQLTQAQGTEPSDKEWAKAVNLKEPELQKTIEQGNR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+RTIRLP H+ E ++K+ +++L + GR E+A + ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQKLGRSATPAEIAAVLEIEPSQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 212 RECLSMARQPISLDVRVGDNQD 233
>gi|428300988|ref|YP_007139294.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428237532|gb|AFZ03322.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 327
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 123/202 (60%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E L+++ PT +WA + EL ++ G
Sbjct: 32 LLTREQEIIFGKQVQQMMILVEAKEALAKKLQREPTLEEWAIQVNQPEAELNLTVHQGKR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD ++G+KFSTYA+WW
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q RTIRLP H+ E ++K+ +++L + GR P E+A+ L ++
Sbjct: 152 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPTPAEIAKELELEPLQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 212 REYLNMARQPVSLDVRVGDNQD 233
>gi|220906009|ref|YP_002481320.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7425]
gi|219862620|gb|ACL42959.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 372
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 133/198 (67%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL +EE++L+ ++ L++L L++ L + G S T + AAA + +++L+ R+ G +
Sbjct: 74 LLQPSEEIELARRVKYLVELSELKDQLGRQLGRSATLPEVAAAMNLTEQQLQIRIYRGQV 133
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI SN+RLV+SIAK Y G+ DLVQEG GL R EKFD KGFKFSTYA+WW
Sbjct: 134 AKSKMIRSNLRLVVSIAKRYLNRGVPFLDLVQEGALGLNRATEKFDPEKGFKFSTYAYWW 193
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q + +++++ SRTIRLP H+VE ++K+ ++ L E R+P +E+A+A +++++L
Sbjct: 194 IRQGITRAIANDSRTIRLPIHIVEKLNKLKKLQRHLKKELQRNPTEQELADALEITLEQL 253
Query: 406 HAVLLSPKAPRSLDQKIG 423
+ + + SL++++G
Sbjct: 254 QMLQRARQQALSLNRRVG 271
>gi|428227195|ref|YP_007111292.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427987096|gb|AFY68240.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 365
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/198 (41%), Positives = 127/198 (64%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL +EE++L+ IQ L ++E LR E G P A+ A A G+ +R+L +RL+ +
Sbjct: 67 LLKPDEEVELARHIQQLNEIEELRAQFEEEHGRRPNKAELADALGLTERQLEQRLHRSQV 126
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R EKFD KG+KFSTYA+WW
Sbjct: 127 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 186
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q + +++++ +RTIRLP H+VE ++K+A+++L + R P E+A ++ ++L
Sbjct: 187 IRQGITRTIANDARTIRLPIHIVEKLNKLKKAQRELRRDLKRPPTEAELATVLEITEEQL 246
Query: 406 HAVLLSPKAPRSLDQKIG 423
+L + SL+ ++G
Sbjct: 247 QQLLQVRRQSLSLNVRVG 264
>gi|254421571|ref|ZP_05035289.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196189060|gb|EDX84024.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 390
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/208 (39%), Positives = 126/208 (60%), Gaps = 6/208 (2%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCG------GSPTFAQWAAAAGVDQRELRRR 279
LL+ +E+ L +Q ++ L ++E L+ + + A WAAAA + + EL
Sbjct: 88 LLSHEDEIVLGKQVQKMMALLAIKEELAAKLSEAEGEEAEVSNADWAAAASIPESELDHH 147
Query: 280 LNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFS 339
+ G K KMI +N+RLV+++AK YQ + DL+QEG GL RG EKFD KG+KFS
Sbjct: 148 MRRGQRSKRKMIEANLRLVVAVAKKYQKRNLEFLDLIQEGTLGLERGVEKFDPMKGYKFS 207
Query: 340 TYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATG 399
TYA+WWI+QA+ ++++ Q+RTIRLP H+ E ++K +++L + GR PN E+ +
Sbjct: 208 TYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKRVQRELSQKLGRSPNAAEIGQELE 267
Query: 400 LSMKRLHAVLLSPKAPRSLDQKIGINQN 427
L K++ L + P SLD +IG NQ+
Sbjct: 268 LEPKQVREYLSIARQPISLDVRIGDNQD 295
>gi|57864855|gb|AAW57030.1| putative group 2 RNA polymerase sigma factor [Cyanothece sp. ATCC
51142]
Length = 368
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 122/177 (68%), Gaps = 1/177 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 284
LL A EE++L+ +Q L++ E R+ L E SP+ A+WA A G + Q++ RL+ G
Sbjct: 69 LLNAEEEVELAHHVQFLVQAEETRQQLQEALQHSPSKAEWAKAMGFETQKQFEHRLHRGR 128
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+W
Sbjct: 129 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 188
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLS 401
WI+QA+ +++++ +RTIRLP H+VE ++K+A++ L + R+PN +E+A+ +S
Sbjct: 189 WIRQAITRTIANDARTIRLPIHVVEKLNKLKKAQRVLKQKLQRNPNEKELADELEVS 245
>gi|148239880|ref|YP_001225267.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. WH 7803]
gi|147848419|emb|CAK23970.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 322
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/199 (40%), Positives = 128/199 (64%), Gaps = 1/199 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPT-FAQWAAAAGVDQRELRRRLNYGI 284
LL+ +E+ L +Q+L+ LE L E+ GG A+ A AAG+ +L+R+L G
Sbjct: 25 LLSHQQEITLGRQVQELMDLEATEAELQEKRGGEAVPAAELAKAAGLSAVQLKRKLQAGR 84
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+W
Sbjct: 85 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 144
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+Q + ++++++SRTIRLP H+ E ++K+ +++L + GR P+ E+A L
Sbjct: 145 WIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQDLGRTPSVTELAAFVELPEDE 204
Query: 405 LHAVLLSPKAPRSLDQKIG 423
+ ++ + P SL+ K+G
Sbjct: 205 VKELMCRARQPVSLEMKVG 223
>gi|425455107|ref|ZP_18834832.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9807]
gi|389804051|emb|CCI17083.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9807]
Length = 328
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 123/202 (60%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E LS++ G P +WA + + + EL R L G
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEGLSKQLGREPQQLEWADSVNLSENELDRALKTGDR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+RTIRLP H+ E ++K +++L + GR E+A L ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAEIALELELEPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 212 REYLSMARQPISLDVRVGDNQD 233
>gi|186684216|ref|YP_001867412.1| RNA polymerase sigma factor [Nostoc punctiforme PCC 73102]
gi|186466668|gb|ACC82469.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 327
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 123/202 (60%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +EVL+++ P ++WA + E+++ + G
Sbjct: 32 LLTREQEIVYGKQVQQMMTLIDAKEVLAKKLHREPDMSEWADVVQQSETEVQQTVAQGKR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q RTIRLP H+ E ++K+ +++L GR P E+A+ L ++
Sbjct: 152 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQTLGRSPTPAEIAKELELEPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD K+G NQ+
Sbjct: 212 REYLNMARQPVSLDVKVGDNQD 233
>gi|186683480|ref|YP_001866676.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186465932|gb|ACC81733.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 332
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 129/204 (63%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ + +Q ++ L +E L+ + PT +W + ++ L ++L+ G
Sbjct: 37 LLTHEQEINFAKQVQKMMALLATKEKLAIQLKRQPTQKEWIENINIGEKSLLQQLHQGQK 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV+SIAK YQ ++ DL+QEG GL RG EKFD +KG+KFSTY +WW
Sbjct: 97 AKQKMIQANLRLVVSIAKKYQRHNLDFLDLIQEGSLGLERGVEKFDPTKGYKFSTYGYWW 156
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +++++Q RTIRLP H+ E ++K +++L + GR P ++AE L K++
Sbjct: 157 IRQAITRAIAEQGRTIRLPIHITEKLNKIKRIQRELTQKLGRTPTAVDIAEELSLDPKQI 216
Query: 406 HAVLLSPKAPRSLDQKIGINQNLK 429
LL + P SL+ ++G +++++
Sbjct: 217 RDYLLLARQPVSLELRVGSDKDIE 240
>gi|425447372|ref|ZP_18827361.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9443]
gi|389732078|emb|CCI03931.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9443]
Length = 328
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 123/202 (60%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E LS++ G P +WA + + + EL R L G
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEGLSKQLGREPQQLEWADSVNLSENELDRALKTGDR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+RTIRLP H+ E ++K +++L + GR E+A L ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKRTQRELAQKLGRSATPAEIALELELEPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 212 REYLSMARQPISLDVRVGDNQD 233
>gi|17231292|ref|NP_487840.1| RNA polymerase sigma factor [Nostoc sp. PCC 7120]
gi|8489801|gb|AAF75758.1|AF262217_2 group 2 sigma 70-type sigma factor E [Nostoc sp. PCC 7120]
gi|17132934|dbj|BAB75499.1| group 2 sigma 70-type sigma factor E [Nostoc sp. PCC 7120]
Length = 327
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 123/202 (60%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E L+++ P+ +WA + E+++ + G
Sbjct: 32 LLTREQEIVYGKQVQQMMSLIDAKEALAKKLDREPSLPEWADHVQKSETEVKQTVTQGKR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q RTIRLP H+ E ++K+ +++L GR P+ E+A+ L ++
Sbjct: 152 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQTLGRSPSPAEIAKELELEPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD K+G NQ+
Sbjct: 212 REYLNMARQPVSLDVKVGDNQD 233
>gi|282895449|ref|ZP_06303586.1| sigE (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281199482|gb|EFA74345.1| sigE (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 327
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 125/202 (61%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL +E+ +Q ++ L +E L++ G P+ ++WA + +L+ +++ G
Sbjct: 32 LLNREQEIIYGKQVQQMMILVEAKEALAKELGYEPSLSEWAIYVNQSENDLKHKISTGKR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD + G+KFSTYA+WW
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTMGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q RTIRLP H+ E ++K+ +++L + GR P+ E+A+ L ++
Sbjct: 152 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPSPTEIAKELELEPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 212 REYLNIARQPISLDVRVGDNQD 233
>gi|307152078|ref|YP_003887462.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306982306|gb|ADN14187.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 328
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 124/202 (61%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L ++ L+ + P+ +WA + + EL R + G
Sbjct: 32 LLTHEQEIVYGKQVQKMMTLLEKKDELAIQLEREPSLTEWANHVQMSEEELNRAIQQGKR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+RTIRLP H+ E ++K+ +++L + GR E+A+A L ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQQLGRSATPSEIAKALDLEPDQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 212 REFLSMSRQPISLDVRVGDNQD 233
>gi|75908126|ref|YP_322422.1| RNA polymerase sigma factor [Anabaena variabilis ATCC 29413]
gi|75701851|gb|ABA21527.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 327
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 123/202 (60%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E L+++ P+ +WA + E+++ + G
Sbjct: 32 LLTREQEIVYGKQVQQMMSLIDAKEALAKKLDREPSLPEWADHVQKSETEVKQTVTQGKR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q RTIRLP H+ E ++K+ +++L GR P+ E+A+ L ++
Sbjct: 152 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQTLGRSPSPAEIAKELELEPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD K+G NQ+
Sbjct: 212 REYLNMARQPVSLDVKVGDNQD 233
>gi|443324962|ref|ZP_21053681.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442795431|gb|ELS04799.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 328
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 124/202 (61%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L + L ++ + +W+ +A + + EL R L G
Sbjct: 33 LLTNEQEIVYGKQVQAMMALLIKKSELEKQLEREISLQEWSESAQISEPELNRLLKLGQR 92
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD KG+KFSTYA+WW
Sbjct: 93 AKSKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPMKGYKFSTYAYWW 152
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+RTIRLP H+ E ++K+ +++L + GR+PN E+A L ++
Sbjct: 153 IRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQKLGRNPNPREIAAELELETSQI 212
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 213 REYLSIARQPISLDVRVGDNQD 234
>gi|425452501|ref|ZP_18832318.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 7941]
gi|425460781|ref|ZP_18840262.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9808]
gi|443669300|ref|ZP_21134532.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa DIANCHI905]
gi|159029420|emb|CAO90796.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|389765706|emb|CCI08495.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 7941]
gi|389826523|emb|CCI22935.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9808]
gi|443330428|gb|ELS45144.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa DIANCHI905]
Length = 377
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 122/177 (68%), Gaps = 1/177 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 284
LL+A EE++L+ ++ L++ E +R+ L E PT +WA A +D +R+L RL G
Sbjct: 78 LLSAEEEIELAYLVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+W
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLS 401
WI+QA+ +++++ +RTIRLP H+VE ++K+A++ L + R+PN E+AEA ++
Sbjct: 198 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQDLQRNPNERELAEALEIT 254
>gi|170076992|ref|YP_001733630.1| group II sigma-70 type sigma factor [Synechococcus sp. PCC 7002]
gi|1769590|gb|AAB95227.1| sigma factor [Synechococcus sp. PCC 7002]
gi|169884661|gb|ACA98374.1| Group II sigma-70 type sigma factor (RpoD family) [Synechococcus
sp. PCC 7002]
Length = 365
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 129/199 (64%), Gaps = 1/199 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ-RELRRRLNYGI 284
LL +EE+QL+ ++ L E R L E+ G SPT +WA+ G++ ++L L G
Sbjct: 66 LLKPDEEIQLAHSVKFLNDAEERRLELQEQLGRSPTNEEWASVLGLETVKQLNSALYKGR 125
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
+ K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+W
Sbjct: 126 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 185
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+QA+ +++++ +RTIRLP H+VE ++K+A++ L R+P E+A+ ++ +
Sbjct: 186 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRTLKQTLQRNPTEAELAQELDITADQ 245
Query: 405 LHAVLLSPKAPRSLDQKIG 423
LH +L + SL+ ++G
Sbjct: 246 LHQLLQLRRQSLSLNHRVG 264
>gi|116073053|ref|ZP_01470315.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
gi|116068358|gb|EAU74110.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
Length = 321
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/199 (40%), Positives = 126/199 (63%), Gaps = 1/199 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQ-WAAAAGVDQRELRRRLNYGI 284
LL+ +E+ L +QDL++LE L L G + A AG+ +L+R+L G
Sbjct: 25 LLSHQQEITLGRQVQDLMELEALESELKSESGEDVVAPEALAKKAGLSGVQLKRKLQAGR 84
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+W
Sbjct: 85 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 144
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+Q + ++++++SRTIRLP H+ E ++K+ +++L E GR P E+AE L +
Sbjct: 145 WIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTELAEFVELPEEE 204
Query: 405 LHAVLLSPKAPRSLDQKIG 423
+ ++ + P SL+ K+G
Sbjct: 205 VKDLMCRARQPVSLEMKVG 223
>gi|113474616|ref|YP_720677.1| RNA polymerase sigma factor [Trichodesmium erythraeum IMS101]
gi|110165664|gb|ABG50204.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 336
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 126/202 (62%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q +++ L+E L E+ + T +WA V ++ L++ + G
Sbjct: 41 LLTREEEIVYGKQVQQMMQFLELKEKLEEKLNRTATLLEWAEHLLVSEKVLKQAIKQGQR 100
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD ++G+KFSTYA+WW
Sbjct: 101 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWW 160
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+RTIRLP H+ E ++K +++L GR P E+A+A L ++
Sbjct: 161 IRQAITRAIAQQARTIRLPIHITEKLNKIKRVQRELIQSLGRSPTPSEIAQALELEPSQI 220
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
LL + P SLD ++G NQ+
Sbjct: 221 REYLLMARHPISLDLRVGDNQD 242
>gi|428774876|ref|YP_007166663.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothece sp. PCC
7418]
gi|428689155|gb|AFZ42449.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothece sp. PCC
7418]
Length = 328
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/202 (41%), Positives = 127/202 (62%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ L +Q ++KL +E L E G T +W AG+ Q EL++ + G
Sbjct: 32 LLTHEQEIILGKQVQKMMKLIEQKEELEEELGREATDEEWTQKAGISQEELQKAMREGNR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD ++G+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+R IRLP H+ E ++K+ +++L + GR+ E+AE GL ++
Sbjct: 152 IRQAITRAIAQQARAIRLPIHITEKLNKIKKVQRELAQKLGRNATPTEIAEELGLEPSQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 212 REYLSIARQPISLDVRVGDNQD 233
>gi|22297808|ref|NP_681055.1| RNA polymerase sigma factor SigD [Thermosynechococcus elongatus
BP-1]
gi|22293985|dbj|BAC07817.1| group2 RNA polymerase sigma factor [Thermosynechococcus elongatus
BP-1]
Length = 315
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 126/202 (62%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L + +RE L+ PT A+WAAAA + + EL + G
Sbjct: 20 LLTHEQEVIYGKQVQQLAAMNEIREKLAAELNREPTRAEWAAAANISEGELETIIENGER 79
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 80 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 139
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+A++QL GR E+A L+ ++
Sbjct: 140 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQRLGRAATINELAAELELTPAQV 199
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 200 REYLERARQPLSLDVRVGDNQD 221
>gi|422301798|ref|ZP_16389163.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9806]
gi|389789168|emb|CCI14818.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9806]
Length = 377
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 81/177 (45%), Positives = 121/177 (68%), Gaps = 1/177 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 284
LL A EE++L+ ++ L++ E +R+ L E PT +WA A +D +R+L RL G
Sbjct: 78 LLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALQLDNERQLENRLYRGR 137
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+W
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLS 401
WI+QA+ +++++ +RTIRLP H+VE ++K+A++ L + R+PN E+A+A ++
Sbjct: 198 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRILKQDLQRNPNERELAQALEMT 254
>gi|254409611|ref|ZP_05023392.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196183608|gb|EDX78591.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 374
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/176 (44%), Positives = 119/176 (67%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL EE++L+ +Q L++++ + E L + G PT A+ A A + +R+ RL G +
Sbjct: 76 LLKPEEEIELATQVQFLVEMDEMTERLHQELGRKPTNAELAQALDLTERQFENRLYRGQI 135
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+WW
Sbjct: 136 SKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPAKGYKFSTYAYWW 195
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLS 401
I+QA+ +++++ +RTIRLP H+VE ++K+ +++L + R P+ E+AEA +S
Sbjct: 196 IRQAITRTIANDARTIRLPIHIVEKLNKLKKVQRELKQKLQRTPDETELAEALDIS 251
>gi|367468373|ref|ZP_09468244.1| RNA polymerase sigma factor RpoD [Patulibacter sp. I11]
gi|365816548|gb|EHN11575.1| RNA polymerase sigma factor RpoD [Patulibacter sp. I11]
Length = 367
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 79/158 (50%), Positives = 111/158 (70%), Gaps = 4/158 (2%)
Query: 267 AAAGVDQRELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 325
AA VD L +R+ G L K KM+ SN+RLV+SIAKNY+ G+ DL+QEG GLVR
Sbjct: 114 AAEEVD---LAKRIERGDLDAKQKMVESNLRLVVSIAKNYRNQGLPFLDLIQEGTLGLVR 170
Query: 326 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSEN 385
AEKFD KGFKFSTYA WWI+QA+ ++L+D++RTIR+P H+VE ++ A ++L +E
Sbjct: 171 AAEKFDYRKGFKFSTYATWWIRQAIARALADKARTIRIPVHVVEKLNKIGRAERKLVTEL 230
Query: 386 GRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
GR P EE+AE TG+ + + ++ S +AP SL++ +G
Sbjct: 231 GREPTPEEIAEVTGIDPEEVESIKRSAQAPVSLEKPVG 268
>gi|282896368|ref|ZP_06304389.1| sigD (sigma 28 (flagella/spoulation)) [Raphidiopsis brookii D9]
gi|281198656|gb|EFA73536.1| sigD (sigma 28 (flagella/spoulation)) [Raphidiopsis brookii D9]
Length = 332
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 129/202 (63%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L ++ L++ P+ +WA AA +D +EL R L G +
Sbjct: 37 LLTHEQEIYYGKQVQKSTALYETKDNLAQELNRQPSLEEWAKAAQLDPQELNRLLAQGEI 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RL++S+AK Y ++L DL+QEG G+ RG EKFD SKG++FSTYA+WW
Sbjct: 97 AKRKMVEANLRLLVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPSKGYRFSTYAYWW 156
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +++++++RTIRLP H+ E ++K+A++ L GR P+ E+A+ ++ K++
Sbjct: 157 IRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRDLSQTLGRSPSIAELAQELEITPKQV 216
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G N +
Sbjct: 217 RDCLEKARLPLSLDLRLGDNYD 238
>gi|159904297|ref|YP_001551641.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9211]
gi|159889473|gb|ABX09687.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9211]
Length = 335
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/238 (37%), Positives = 144/238 (60%), Gaps = 5/238 (2%)
Query: 190 MSVKSGSTSRRKRPSV---QEVDYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKL 245
M+V++ TS RK V + +D +R YLR LL+ ++E+ L +Q+L+ L
Sbjct: 1 MAVQAEITSSRKIIPVTLEKSTSDNDLIRSYLR-DIGRVPLLSNDQEITLGRHVQELMAL 59
Query: 246 EGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 305
E L + G P + A+AAG+ L+++ G K++M+ +N+RLV+SIAK Y
Sbjct: 60 ENLEKDWQSTHGQKPNLDELASAAGLTVGALKKKFRLGERAKERMVAANLRLVVSIAKKY 119
Query: 306 QGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF 365
M L DL+QEG GLVRG EKFD ++G+KFSTYA+WWI+Q + ++++++SR IRLP
Sbjct: 120 TKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYAYWWIRQGITRAIAEKSRAIRLPI 179
Query: 366 HMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
H+ E ++K+ ++ L + R P+ E+AE +S + + ++L P SL+ K+G
Sbjct: 180 HITEMLNKLKKGQRDLSQQLSRTPSVAELAEYIDVSEEEVKDLMLKASQPVSLEMKVG 237
>gi|224088962|ref|XP_002308586.1| predicted protein [Populus trichocarpa]
gi|222854562|gb|EEE92109.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 160/260 (61%), Gaps = 8/260 (3%)
Query: 165 AVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSS 224
VR+ ++ ERK RR RAA S+ S +VQ + P R ++SSS
Sbjct: 206 VVRTGKKEERKFRRERAASDNGKKTTSLSLPS------KTVQN-NLPKPTFVKRTSSSSS 258
Query: 225 RL-LTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYG 283
R L A E +++ G++ LE +R L E G + + WA A G+D++ L+++L +G
Sbjct: 259 RRSLIARNEAKMTRGVKVASDLERIRTTLEEETGQVVSLSCWAEATGLDKKVLQQQLQFG 318
Query: 284 ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH 343
C+D++I + LV+ IA+NY+G G+ ++DL+Q G GL++GAE+FD ++G++FSTY
Sbjct: 319 WYCRDELIKNTHSLVLYIARNYRGMGIAMEDLIQAGNLGLLQGAERFDPTRGYRFSTYVQ 378
Query: 344 WWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMK 403
+WI++++ K + +R I++P+ + + ++++ARK L + +GR+P++ EVA+ TGLS+
Sbjct: 379 YWIRKSMLKIVERHARGIQIPYALSRSINKIQKARKALSNSHGRYPDDWEVAKFTGLSLA 438
Query: 404 RLHAVLLSPKAPRSLDQKIG 423
++ + + SLDQKIG
Sbjct: 439 KIESAQKCLRVVASLDQKIG 458
>gi|388501386|gb|AFK38759.1| unknown [Lotus japonicus]
Length = 311
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 128/205 (62%)
Query: 223 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 282
+ +LLT EE QL + IQ+L +LE ++ L + G PT A+WA G+ L+ +L
Sbjct: 8 TKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRS 67
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 342
G K+K+I +N+R+V+ +AKNY G G++ QDL+QEG GL++ EKF G +F++YA
Sbjct: 68 GTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYA 127
Query: 343 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSM 402
+WWI+Q +R++L SRTIRLP ++ ++ EA+K E HP EE+A G+++
Sbjct: 128 YWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTV 187
Query: 403 KRLHAVLLSPKAPRSLDQKIGINQN 427
+L +L + + P S+ Q + +Q+
Sbjct: 188 DKLEILLSAARIPLSMQQTVWTDQD 212
>gi|427418169|ref|ZP_18908352.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425760882|gb|EKV01735.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 319
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 130/204 (63%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ ++ L+ +E +++ L G PT W+ AA + EL+ + G
Sbjct: 23 LLTPEQEVTFGNAVRTLMTIETIKDGLVGSLGHEPTLEDWSKAANLTIEELKMAVEKGQR 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K +M+ +N+RLV+S+AK Y + + DL+QEG GL RG EKFD SKG++FSTYA+WW
Sbjct: 83 AKRQMVEANLRLVVSVAKKYLKRNVEILDLIQEGTIGLQRGVEKFDPSKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++SRT+RLP H+ E ++K+ ++QL + GR +E+A A L ++++
Sbjct: 143 IRQAMTRAIAEKSRTMRLPIHIHEKINKIKKTQRQLAQQLGRSATFQEIANALDLPLEKV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQNLK 429
+ + P SLD ++G NQ+++
Sbjct: 203 RDCISYNRQPLSLDLRLGDNQDVE 226
>gi|443474760|ref|ZP_21064729.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
gi|443020446|gb|ELS34403.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
Length = 336
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 123/202 (60%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ EE+ +Q ++ L ++E ++ PT +WA A G++ L + G
Sbjct: 41 LLSNEEEIVYGKQVQQMMLLFEVQEKIAHNSDRLPTEQEWAEAVGLEPEILHSNIRIGTR 100
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV+S+AK YQ + L DLVQEG GL R +KFD +KGFKFSTYA+WW
Sbjct: 101 AKRKMIEANLRLVVSVAKKYQKRNLELLDLVQEGTLGLERAVDKFDPTKGFKFSTYAYWW 160
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+RTIRLP H+ E ++K+A++QL + GR E+A + ++
Sbjct: 161 IRQAITRAIAQQARTIRLPVHITEKLNKIKKAQRQLSQDLGRVATVAEIAHELKIKTDQV 220
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD +IG NQ+
Sbjct: 221 RECLSLSRQPISLDLRIGDNQD 242
>gi|116074383|ref|ZP_01471645.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
gi|116069688|gb|EAU75440.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
Length = 341
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 134/221 (60%), Gaps = 4/221 (1%)
Query: 204 SVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFA 263
+V EVD YLR LL+ +E+ L +QDL++LE L L G
Sbjct: 26 AVAEVDLVRS--YLRDIGRVP-LLSHQQEITLGRQVQDLMELEALESELKSESGEEVVAP 82
Query: 264 Q-WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 322
+ A AG+ +L+R+L G K++M+ +N+RLV+S+AK Y M L DL+QEG G
Sbjct: 83 EALAKKAGLSGVQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIG 142
Query: 323 LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLY 382
LVRG EKFD ++G+KFSTYA+WWI+Q + ++++++SRTIRLP H+ E ++K+ +++L
Sbjct: 143 LVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELS 202
Query: 383 SENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
E GR P E+AE L + + ++ + P SL+ K+G
Sbjct: 203 QELGRTPTVTELAEFVELPEEEVKDLMCRARQPVSLEMKVG 243
>gi|221195781|ref|ZP_03568834.1| RNA polymerase sigma factor RpoD [Atopobium rimae ATCC 49626]
gi|221184255|gb|EEE16649.1| RNA polymerase sigma factor RpoD [Atopobium rimae ATCC 49626]
Length = 455
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 124/216 (57%), Gaps = 17/216 (7%)
Query: 212 DPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
DP+R LLTA+EE M++ AG + KLE + +
Sbjct: 152 DPVRMYLKEIGKVDLLTASEEVNLAMKIEAGTEATQKLEDFED-------------EKIE 198
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
+ +QR L R G+ K ++I++N+RLV+SIAK Y G GM DL+QEG GL+R
Sbjct: 199 LSRAEQRRLMRIEQVGLDAKQQLISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAV 258
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
EKFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR
Sbjct: 259 EKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGR 318
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
P EE+ G+S R+ + + P SL+ IG
Sbjct: 319 DPTPEEIGAEMGMSPDRVREIQKISQEPVSLETPIG 354
>gi|254415890|ref|ZP_05029647.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196177317|gb|EDX72324.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 352
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 123/202 (60%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L ++ L+E PT +WA +++ L++ +N G
Sbjct: 57 LLTHEQEIVYGKQVQQMMPLLEAKDALAETLEREPTMQEWADHVDLEESALKKIINQGTR 116
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD ++G+KFSTYA+WW
Sbjct: 117 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWW 176
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+R IRLP H+ E ++K+ +++L GR+ E+ + L ++
Sbjct: 177 IRQAITRAIAQQARAIRLPIHITEKLNKIKKVQRELSQRLGRNATPTEIGQELELEPAQI 236
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 237 REYLSIARQPVSLDVRVGDNQD 258
>gi|291565943|dbj|BAI88215.1| group 2 RNA polymerase sigma factor SigD [Arthrospira platensis
NIES-39]
Length = 331
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 127/202 (62%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L+ R L+++ PT AQWA + +L+ L+ G L
Sbjct: 36 LLTHEQEIVYGKQVQQATLLQEKRNELAKQLAYEPTEAQWAELVNLSVAQLQHILHQGQL 95
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 96 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 155
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+A++QL + GR E+A L+ K++
Sbjct: 156 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQQLGRAATMNELAAELDLTPKQI 215
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 216 REYLEKSRLPLSLDLRVGDNQD 237
>gi|159470255|ref|XP_001693275.1| chloroplast RNA polymerase sigma factor, c [Chlamydomonas
reinhardtii]
gi|42742499|gb|AAM88387.2|AF525691_1 RNA polymerase sigma factor [Chlamydomonas reinhardtii]
gi|47076042|emb|CAF25319.1| sigma-like transcription factor [Chlamydomonas reinhardtii]
gi|158277533|gb|EDP03301.1| chloroplast RNA polymerase sigma factor, c [Chlamydomonas
reinhardtii]
Length = 752
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 130/206 (63%), Gaps = 1/206 (0%)
Query: 227 LTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILC 286
L +E +++A +D L LE ++ + T + AAA +D L+ R + G+
Sbjct: 431 LDVEKEREVTAVCRDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKA 490
Query: 287 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI 346
K+ ++ SN +LV+++ K++ G G ++QDLV EG +GL++G EK+DA+KGF+F TYAHWWI
Sbjct: 491 KELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWI 550
Query: 347 KQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLH 406
+QAV +SL++ R +RLP HM+E R+K +L ++ R P E+A+A GL + R+
Sbjct: 551 RQAVSRSLAETGRAVRLPMHMIEQLTRLKNLSAKLQTQLAREPTLPELAKAAGLPVTRVQ 610
Query: 407 AVLLSPKAPRSLDQKIGINQNLKPSV 432
++ + ++ SLD IG N+ L P+V
Sbjct: 611 MLMETARSAASLDTPIGGNE-LGPTV 635
>gi|427730640|ref|YP_007076877.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427366559|gb|AFY49280.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 352
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 124/202 (61%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E L+++ P+ +WA + E+++ + G
Sbjct: 57 LLTREQEIVYGKQVQQMMSLLDAKEALAKKLEREPSLPEWADHVHQSETEVKQTVAQGKR 116
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD ++G+KFSTYA+WW
Sbjct: 117 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWW 176
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q RTIRLP H+ E ++K+ +++L GR P+ E+A+ L ++
Sbjct: 177 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQTLGRSPSPAEIAKELELEPAQI 236
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 237 REYLNMARQPVSLDVRVGDNQD 258
>gi|257784627|ref|YP_003179844.1| RpoD subfamily RNA polymerase sigma-70 subunit [Atopobium parvulum
DSM 20469]
gi|257473134|gb|ACV51253.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Atopobium
parvulum DSM 20469]
Length = 455
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 124/216 (57%), Gaps = 17/216 (7%)
Query: 212 DPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
DP+R LLTA+EE M++ AG KLE + L E
Sbjct: 152 DPVRMYLKEIGKVDLLTASEEVHLAMKIEAGTAASQKLEDFEDGLIELNRA--------- 202
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
+QR L R + G+ K ++I++N+RLV+SIAK Y G GM DL+QEG GL+R
Sbjct: 203 ----EQRRLMRIESVGLDAKQQLISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAV 258
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
EKFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR
Sbjct: 259 EKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDFGR 318
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
P EE+ G+S R+ + + P SL+ IG
Sbjct: 319 DPTPEEIGSEMGMSPDRVREIQKISQEPVSLETPIG 354
>gi|332708935|ref|ZP_08428906.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332352477|gb|EGJ32046.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332651118|gb|AEE81160.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 333
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 124/202 (61%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L G + L++ PT +WA+ + EL++ ++ G
Sbjct: 38 LLTHEQEIVYGKQVQQMMALLGEKATLAQELEREPTTEEWASYVNKSEAELKKAIDQGTR 97
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD ++G+KFSTYA+WW
Sbjct: 98 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWW 157
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+R IRLP H+ E ++K+ +++L GR+ E+A+ L ++
Sbjct: 158 IRQAITRAIAQQARAIRLPIHITEKLNKIKKVQRELSQTLGRNATPTEIAKELDLEPAQI 217
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 218 REYLSIARQPISLDVRVGDNQD 239
>gi|434395228|ref|YP_007130175.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428267069|gb|AFZ33015.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 328
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 124/202 (61%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ + +E L+++ PT +WA+ + + +L + G
Sbjct: 33 LLTREQEIIYGKQVQQMMSVLDAKEALAKKLHREPTVQEWASHVKMSEADLHDTVRRGQR 92
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD ++G+KFSTYA+WW
Sbjct: 93 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTMGLERGVEKFDPTRGYKFSTYAYWW 152
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+RTIRLP H+ E ++K+ +++L GR P+ E+A L ++
Sbjct: 153 IRQAITRAIAQQARTIRLPIHITEKLNKIKKIQRELAQRLGRSPSPAEIATELELEPSQI 212
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 213 REYLNLARQPVSLDVRVGDNQD 234
>gi|72383045|ref|YP_292400.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL2A]
gi|72002895|gb|AAZ58697.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. NATL2A]
Length = 335
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 126/202 (62%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ +E+ L +QDL+ LE L L G P +A AG+ +L+++L G
Sbjct: 40 LLSHEQEITLGRQVQDLVSLENLETELESDLGEKPDINFFADKAGISPIQLKKKLKSGRR 99
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+WW
Sbjct: 100 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 159
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q + ++++++SR+IRLP H+ E ++K+ +++L E R P +E++E L +
Sbjct: 160 IRQGITRAIAEKSRSIRLPIHITEMLNKLKKGQRELSQELSRTPTLKELSEYVELPETDV 219
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
++ P SL+ KIG ++
Sbjct: 220 KDLMSRAGQPVSLETKIGDGED 241
>gi|332711345|ref|ZP_08431277.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332349894|gb|EGJ29502.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332651122|gb|AEE81162.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 319
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 133/219 (60%)
Query: 209 DYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAA 268
D +D +R LLT +E+ ++ L L+ ++E L ++ G PTF++WA A
Sbjct: 6 DSTDLVRTYLKEIGRVPLLTHEQEISYGKKVKQLTTLKEVKESLVQQLGREPTFSEWATA 65
Query: 269 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 328
+ + +L+ + G K KM+ +N+RLV+++AK Y + L DL+QEG GL RG E
Sbjct: 66 SCLTDSQLKSSIAVGESAKRKMVEANLRLVVAVAKKYIKRNLELLDLIQEGTIGLQRGVE 125
Query: 329 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH 388
KFD +KG++FSTYA+WWI+QA+ ++++++ RTIRLP H+ E ++K+A++QL + GR
Sbjct: 126 KFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQKLGRT 185
Query: 389 PNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
E+A L+ +L + P SL+ ++G N++
Sbjct: 186 ATISELAIELNLTPDQLREYFEQARQPLSLELRVGDNKD 224
>gi|126659670|ref|ZP_01730799.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
gi|126619015|gb|EAZ89755.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
Length = 369
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 81/177 (45%), Positives = 120/177 (67%), Gaps = 1/177 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 284
LL A EE++L+ +Q L++ E R+ L E PT A+W A G + Q++ RL+ G
Sbjct: 70 LLNAQEEVELANHVQFLVQAEETRQQLREELQRPPTKAEWGQAMGFETQKQFEHRLHRGR 129
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+W
Sbjct: 130 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 189
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLS 401
WI+QA+ +++++ +RTIRLP H+VE ++K+A++ L + R+PN +E+A+ +S
Sbjct: 190 WIRQAITRTIANDARTIRLPIHVVEKLNKLKKAQRVLKQKLQRNPNEKELADELEVS 246
>gi|158337702|ref|YP_001518878.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|158307943|gb|ABW29560.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 122/202 (60%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL EE+ +Q + L+ L++ L E PT A+WA A + +L++ L G
Sbjct: 23 LLNHEEEIIFGKQVQRFVALQDLKQDLQEHLDREPTQAEWADKAEISVSQLQKELKLGHK 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
KM+ SN+RLV+SIAK Y A + DL+QEG GL RG EKFD KG++FSTYA+WW
Sbjct: 83 ANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQEGTIGLQRGVEKFDPMKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +++++Q RTIRLP H+ E ++++ R+QL + R P +E+A L+ K++
Sbjct: 143 IRQAMTRAIAEQERTIRLPIHINEKLSKLRKVRRQLSQKLHRDPTVQELAVEMDLAPKKI 202
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + SLD +IG QN
Sbjct: 203 EDYLNYARRSISLDIQIGDQQN 224
>gi|284046131|ref|YP_003396471.1| RpoD subfamily RNA polymerase sigma-70 subunit [Conexibacter woesei
DSM 14684]
gi|283950352|gb|ADB53096.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Conexibacter
woesei DSM 14684]
Length = 367
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 74/150 (49%), Positives = 108/150 (72%), Gaps = 1/150 (0%)
Query: 275 ELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
+L +R+ G L K KM+ SN+RLV+SIAKNY+ G+ DL+QEG GLVR AEKFD
Sbjct: 119 DLAKRIERGDLDAKQKMVESNLRLVVSIAKNYRNQGLPFLDLIQEGTLGLVRAAEKFDYR 178
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++L+D++RTIR+P H+VE ++ A ++L +E GR P EE
Sbjct: 179 KGFKFSTYATWWIRQAIARALADKARTIRIPVHVVEKLNKIGRAERKLVTELGREPTAEE 238
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
+A+ TG+ + + ++ S +AP SL++ +G
Sbjct: 239 IADVTGIDPEEVDSIKRSAQAPVSLEKPVG 268
>gi|428301225|ref|YP_007139531.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428237769|gb|AFZ03559.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 318
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 130/202 (64%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ EE++ +Q + L +RE L+ + G PT +WA A+ ++ EL + +
Sbjct: 23 LLSHEEEIKFGKQVQRAVVLNEVRESLALKLGHEPTLEEWAIASELEPLELNQAIADADE 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K +M+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRRMVEANLRLVVSVAKKYLKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+A++QL + GR P+ E+A+ L+ ++
Sbjct: 143 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQKLGRAPSAGELAKELDLTPAQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G N +
Sbjct: 203 REYLEKARLPLSLDLRLGDNHD 224
>gi|352095348|ref|ZP_08956451.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351679359|gb|EHA62501.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 335
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 80/199 (40%), Positives = 128/199 (64%), Gaps = 1/199 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLR-EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 284
LL+ +E+ L +Q+L+ LE L E+ +R + A AAGV +L+R+L G
Sbjct: 39 LLSHQQEITLGRQVQELMDLEALEAELKDQRGEDQVAREEVAKAAGVSAAQLKRKLQAGR 98
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+W
Sbjct: 99 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 158
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+Q + ++++++SRTIRLP H+ E ++K+ +++L E GR P+ E+A L +
Sbjct: 159 WIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPSVTELASFVELPEEE 218
Query: 405 LHAVLLSPKAPRSLDQKIG 423
+ ++ + P SL+ K+G
Sbjct: 219 VKDLMCRARQPVSLEMKVG 237
>gi|158316157|ref|YP_001508665.1| RpoD family RNA polymerase sigma factor [Frankia sp. EAN1pec]
gi|158111562|gb|ABW13759.1| RNA polymerase, sigma 70 subunit, RpoD family [Frankia sp. EAN1pec]
Length = 400
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 127/221 (57%), Gaps = 21/221 (9%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLL----KLEGLREVLSERCGGSPTFAQWA 266
SDP+R RLLTA EE+ L+ I+ L KL +R SP
Sbjct: 101 SDPVRMYLKAIGRVRLLTAEEEVDLAKRIEAGLFASEKLAAIRRT-------SPRL---- 149
Query: 267 AAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 326
+R+L G + K K++ +N+RLV+SIAK Y G GM L DL+QEG GL+R
Sbjct: 150 ------RRDLEAIEQDGQIAKRKLVEANLRLVVSIAKRYVGRGMLLLDLIQEGNLGLIRA 203
Query: 327 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG 386
EKFD +KG+KFSTYA WWI+QAV ++++DQ RTIR+P HMVE +V ++QL + G
Sbjct: 204 VEKFDYTKGYKFSTYATWWIRQAVTRAIADQGRTIRIPVHMVETINKVTRIQRQLLQDLG 263
Query: 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
R P+ EE+A L+ R+ +L + P +L+ IG Q+
Sbjct: 264 REPSPEEIATQVDLAPHRVEEILKVGQTPVALETPIGEEQD 304
>gi|352093658|ref|ZP_08954829.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351679998|gb|EHA63130.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 321
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 80/199 (40%), Positives = 128/199 (64%), Gaps = 1/199 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLR-EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 284
LL+ +E+ L +Q+L+ LE L E+ +R + A AAGV +L+R+L G
Sbjct: 25 LLSHQQEITLGRQVQELMDLEALEAELKDQRGEDQVAREEVAKAAGVSAAQLKRKLQAGR 84
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+W
Sbjct: 85 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 144
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+Q + ++++++SRTIRLP H+ E ++K+ +++L E GR P+ E+A L +
Sbjct: 145 WIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPSVTELASFVELPEEE 204
Query: 405 LHAVLLSPKAPRSLDQKIG 423
+ ++ + P SL+ K+G
Sbjct: 205 VKDLMCRARQPVSLEMKVG 223
>gi|427733998|ref|YP_007053542.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427369039|gb|AFY52995.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 322
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 125/202 (61%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ + L+ L+E L+ PT +WA A ++ ++L + G +
Sbjct: 27 LLTHEEEILFGKQVHRATVLQSLKESLTNEFNRQPTLDEWAERAKLEPQDLEEAIEKGEV 86
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD SKG++FSTYA+WW
Sbjct: 87 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPSKGYRFSTYAYWW 146
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+A++QL GR E+A+ L+ K++
Sbjct: 147 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQRLGRAATISELAQELDLTPKQV 206
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G N +
Sbjct: 207 REYLEKARVPLSLDLRLGDNYD 228
>gi|300868245|ref|ZP_07112876.1| RNA polymerase sigma factor SigD [Oscillatoria sp. PCC 6506]
gi|300333769|emb|CBN58060.1| RNA polymerase sigma factor SigD [Oscillatoria sp. PCC 6506]
Length = 319
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 126/202 (62%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L + L+ G PT +WA AAG+ + EL+R ++ G
Sbjct: 24 LLTHEQEILYGKQVQRTTALHEAKNALALELGRDPTRTEWAEAAGLSETELQRTIHAGER 83
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K M+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 84 AKRMMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 143
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+A++ L + GR E+A L+ K++
Sbjct: 144 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRYLAQKLGRAATANELAAELELTPKQI 203
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 204 REYLERARLPLSLDLRVGDNQD 225
>gi|86607249|ref|YP_476012.1| RNA polymerase sigma factor, group 1 [Synechococcus sp. JA-3-3Ab]
gi|86555791|gb|ABD00749.1| RNA polymerase sigma factor, group 1 [Synechococcus sp. JA-3-3Ab]
Length = 361
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 119/193 (61%)
Query: 231 EEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKM 290
EE++LS IQ L ++ R ++ G P+ + AAA + LR R+ G + K+
Sbjct: 69 EEIELSRKIQQKLLIDQARREWRQQWGQDPSDEELAAALQIPVSTLRSRIRQGEQAQRKL 128
Query: 291 ITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAV 350
I +N+RLV+S+AK Y G+ DL+QEG GL+R EKF+A +GF+FSTYAHWWI+Q +
Sbjct: 129 INANLRLVVSVAKKYLNRGVPFLDLIQEGNMGLIRATEKFNAERGFRFSTYAHWWIRQGI 188
Query: 351 RKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 410
+ +++Q+RTIRLP HMV+ +K ++L GR P E+AEA G+ +K+L +
Sbjct: 189 TRCIANQARTIRLPVHMVDKVRLLKRTNRELMKARGRRPTEAELAEALGIKVKKLRMIQQ 248
Query: 411 SPKAPRSLDQKIG 423
+ P SLD +G
Sbjct: 249 AAALPLSLDVPVG 261
>gi|158334481|ref|YP_001515653.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|158304722|gb|ABW26339.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 124/202 (61%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL +E+ +Q ++ L+ L++ L E+ P ++WA A + +L++ L G
Sbjct: 23 LLNHEQEIIFGKQVQRMIMLQELKQQLHEQLEREPNLSEWADQADIPVSQLQKELKLGQT 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
KM+ SN+RLV+SIAK Y A + DL+QEG GL RG EKFD +KG++FSTYA+WW
Sbjct: 83 ANRKMVESNLRLVVSIAKKYNKAKLEFLDLIQEGTIGLQRGVEKFDPTKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +++++Q RTIRLP H+ E ++++ ++QL + R P E+A LS K++
Sbjct: 143 IRQAMTRAIAEQERTIRLPIHINEKLNKLRKVKRQLSLKLHRDPTVAELATEMELSPKKV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
A L + SLD ++G QN
Sbjct: 203 EAFLSYARHSISLDVQVGDQQN 224
>gi|168036108|ref|XP_001770550.1| plastid sigma factor SIG1 [Physcomitrella patens subsp. patens]
gi|14669828|dbj|BAB62006.1| PpSIG1 [Physcomitrella patens]
gi|14669830|dbj|BAB62007.1| PpSIG1 [Physcomitrella patens]
gi|162678258|gb|EDQ64719.1| plastid sigma factor SIG1 [Physcomitrella patens subsp. patens]
Length = 677
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 101/272 (37%), Positives = 156/272 (57%), Gaps = 13/272 (4%)
Query: 161 SQSIAVRSRRQTERKARRTRAAEKAAANVMSV------KSGSTSRR-KRPSVQEVDYSDP 213
S S + R+RR R+ R A + + + +++ + G RR K VQ DY
Sbjct: 302 SGSPSARTRRLESRQRRVAIAGKPTSPDALTIHPLKKYQKGERVRRVKFDGVQ--DYLTT 359
Query: 214 LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ 273
YLR T + LLT EE+ LS ++ L L R+ L+ G P+ +WA +
Sbjct: 360 --YLREITKIN-LLTKQEEVFLSKKLRIGLNLLEERKKLAAELGYVPSNEEWAPHMNLSV 416
Query: 274 RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
+L R+L +DKM+ +N+RLV+S+AK Y G+ + DL+QEG GL+RG EKFD +
Sbjct: 417 GDLVRKLGEAEWARDKMVMANLRLVVSVAKQYHSFGLEMADLIQEGSIGLLRGVEKFDHT 476
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
+G+K STY HWWI+Q V ++++D SRT+RLP H+ + R+++A+ L SE G + +E
Sbjct: 477 RGYKLSTYVHWWIRQGVTRAIADHSRTVRLPVHVHDTLGRIRKAKSTLLSE-GCTASVQE 535
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGIN 425
++EAT L+ ++ L K SLD++IG N
Sbjct: 536 ISEATNLTGTKIKNTLQVTKKLVSLDKEIGRN 567
>gi|434396665|ref|YP_007130669.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428267762|gb|AFZ33703.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 327
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 122/202 (60%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E L + G + +WA + + EL R + G
Sbjct: 32 LLTHEQEIVYGKQVQKMMTLLTKKEKLEHKLGKELSLKEWANQVNLSEAELDRAIKQGQR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EK+D +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKYDPTKGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+RTIRLP H+ E ++K+ +++L + GR E+A+ L ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQKLGRSATPAEIAQELELDTAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 212 REYLNVARQPISLDVRVGDNQD 233
>gi|427720859|ref|YP_007068853.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427353295|gb|AFY36019.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 327
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 123/202 (60%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E L+++ P+ +WA + E+++ + G
Sbjct: 32 LLTREQEIIFGKQVQQMMTLLDAKEDLAKKLHREPSLEEWANLVHQPETEVKQTVAQGKR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q RTIRLP H+ E ++K+ +++L + GR P E+A+ L ++
Sbjct: 152 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPTPAEIAKELELEPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 212 REYLNMARQPVSLDVRVGDNQD 233
>gi|413932356|gb|AFW66907.1| hypothetical protein ZEAMMB73_346249 [Zea mays]
Length = 292
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 119/184 (64%), Gaps = 1/184 (0%)
Query: 239 IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLV 298
IQ+L+KLEG + L +CG PT +WA A G+ REL+ + G C++KM SN RLV
Sbjct: 5 IQNLMKLEGAQRNLQAQCGREPTVEEWAQAVGMSCRELQSCVRTGRRCREKMARSNFRLV 64
Query: 299 ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 358
I +A+ Y+G G+++QDLVQ+GC GL++ EKF+ SKG +F TYA+WWI+Q+++KS+ S
Sbjct: 65 IHVARKYEGCGLDIQDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQSIKKSIFKNS 124
Query: 359 RTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSL 418
R IRLP + +V +AR + +G P NE VA G+++++L + + RS+
Sbjct: 125 RLIRLPESVYALLRKVGKARMECIM-DGEQPTNEVVARRAGITIEKLAKLRAKTRKVRSM 183
Query: 419 DQKI 422
++
Sbjct: 184 QDRV 187
>gi|332708973|ref|ZP_08428943.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332352162|gb|EGJ31732.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332651120|gb|AEE81161.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 373
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 121/177 (68%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL +EE+ L+ ++ L++++ L L E+ PT A+ AAA + +R+L L G +
Sbjct: 75 LLKPDEEVDLARRVKFLVEIDHLHNSLQEKLDRKPTKAEVAAAVEMTERQLEGNLYRGRV 134
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD KG+KFSTYA+WW
Sbjct: 135 AKRKMIRSNLRLVVSIAKRYINRGVPFLDLIQEGALGLNRAAEKFDPDKGYKFSTYAYWW 194
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSM 402
I+QA+ +++++ +RTIRLP H+VE ++K+A+++L + R+PN E+A+A +S+
Sbjct: 195 IRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRELKQKLQRNPNELELAQALEISL 251
>gi|256377300|ref|YP_003100960.1| RpoD subfamily RNA polymerase sigma-70 subunit [Actinosynnema mirum
DSM 43827]
gi|255921603|gb|ACU37114.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Actinosynnema
mirum DSM 43827]
Length = 349
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/233 (40%), Positives = 132/233 (56%), Gaps = 15/233 (6%)
Query: 191 SVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
+K +T RR + D + YL+A RLLTA++E++L+ ++ L E L +
Sbjct: 32 DIKLAATLRRDAEAANAADSTRA--YLKAI-GRVRLLTADQEVELARRVEAGLYAEHLLD 88
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
+ G ELRR + G KD ++ +N+RLV+SIAK Y G GM
Sbjct: 89 LPPAARGSRRPI------------ELRRVVRDGQRAKDHLLEANLRLVVSIAKRYTGKGM 136
Query: 311 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 370
L D++QEG GLVR EKFD +KGFKFSTYA WWI+QA+ ++L+DQSRTIRLP HMVE
Sbjct: 137 ALLDVIQEGNLGLVRAVEKFDYAKGFKFSTYATWWIRQAITRALADQSRTIRLPVHMVEV 196
Query: 371 TYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
++ + L NGR EEVA ++ +++ + + P SLDQ IG
Sbjct: 197 VTKLARVERDLLHRNGREATAEEVAVELDVTPEKVVELRQHARTPVSLDQTIG 249
>gi|427706077|ref|YP_007048454.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427358582|gb|AFY41304.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 327
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 122/202 (60%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E L+++ P+ +WA + ++++ + G
Sbjct: 32 LLTREQEIVFGKQVQQMMTLVEAKEALAKKLHREPSLPEWANHVKQSETDVKQTVAQGKR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q RTIRLP H+ E ++K+ +++L GR P E+A+ L ++
Sbjct: 152 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQTLGRSPTPAEIAKELELEPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 212 REYLNMARQPVSLDVRVGDNQD 233
>gi|124026787|ref|YP_001015902.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL1A]
gi|123961855|gb|ABM76638.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. NATL1A]
Length = 335
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 126/202 (62%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ +E+ L +QDL+ LE L L G P +A AG+ +L+++L G
Sbjct: 40 LLSHEQEITLGRQVQDLVVLENLETELESDLGEKPDINFFADKAGLSPIQLKKKLKSGRR 99
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+WW
Sbjct: 100 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 159
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q + ++++++SR+IRLP H+ E ++K+ +++L E R P +E++E L +
Sbjct: 160 IRQGITRAIAEKSRSIRLPIHITEMLNKLKKGQRELSQELSRTPTLKELSEYVELPETDV 219
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
++ P SL+ KIG ++
Sbjct: 220 KDLMSRAGQPVSLETKIGDGED 241
>gi|434391486|ref|YP_007126433.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428263327|gb|AFZ29273.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 384
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 128/198 (64%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL EE++L+ ++ +++ E +++ L P A+ A G+ +R+L RL G +
Sbjct: 86 LLKPEEEVELARRVKFIVEFEEIQQRLQAEIKRQPNKAEVATLLGMSERQLEHRLYQGRV 145
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD KG+KFSTYA+WW
Sbjct: 146 AKRKMIRSNLRLVVSIAKRYLNRGLPFLDLIQEGAMGLNRAAEKFDPDKGYKFSTYAYWW 205
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +++++ +RTIRLP H+VE ++K+A+++L + R+P+ E+A+ +S + L
Sbjct: 206 IRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQQLQRNPSEVELAQFLEISAEHL 265
Query: 406 HAVLLSPKAPRSLDQKIG 423
+L + SL+ ++G
Sbjct: 266 RQLLQLRRKSLSLNHRVG 283
>gi|428305801|ref|YP_007142626.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428247336|gb|AFZ13116.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 373
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 79/172 (45%), Positives = 117/172 (68%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE+ L+ +Q +L++E + E L + P+ A+ A + G+++++L RL +
Sbjct: 75 LLKAEEEVDLANQVQFILQIEEIEERLEAQLNHKPSKAEIAESLGMNEKQLDHRLYQSRV 134
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD KG+KFSTYA+WW
Sbjct: 135 AKRKMIRSNLRLVVSIAKRYLNRGVAFLDLIQEGALGLNRAAEKFDPDKGYKFSTYAYWW 194
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEA 397
I+QA+ +++++ SRTIRLP H+VE ++K+A++ L E R+P E+AEA
Sbjct: 195 IRQAITRTIANDSRTIRLPIHIVEKLNKLKKAQRNLKQELHRNPTEVELAEA 246
>gi|428780048|ref|YP_007171834.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
gi|428694327|gb|AFZ50477.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
Length = 375
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/198 (42%), Positives = 129/198 (65%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL +EE++L+ ++ L +E R+ L+ G SPT + AA + +EL R+L+ G L
Sbjct: 78 LLQPDEEIELAQKVKFLADMENKRQELAIESGSSPTKEELAATVSLSVKELERKLHQGRL 137
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K +MI SN+RLV+SIAK Y G+ DL+QEG GL R EKFD +KG+KFSTYA+WW
Sbjct: 138 AKRQMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRATEKFDPNKGYKFSTYAYWW 197
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +++++ +RTIRLP H+VE ++K+ ++ L E R+P EE+A +S +L
Sbjct: 198 IRQAITRTIANDARTIRLPIHIVEKLNKLKKVQRDLKQELQRNPTEEELAAGLDISQSQL 257
Query: 406 HAVLLSPKAPRSLDQKIG 423
H +L + SL+ ++G
Sbjct: 258 HQLLQLRRQSLSLNHRVG 275
>gi|443329722|ref|YP_007378793.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428682348|gb|AFZ61112.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 332
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 124/202 (61%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ + +Q ++ + +E LSE+ PT +WA +++ L ++L+ G +
Sbjct: 37 LLTHEQEIFFAKQVQQMMVMLTAKEELSEKLQREPTRQEWADKMQLEEDMLLQQLSQGQI 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV+SIAK YQ + DL+QEG GL RG EKFD + G+KFSTYA+WW
Sbjct: 97 AKQKMIQANLRLVVSIAKKYQKRNIEFLDLIQEGALGLERGVEKFDPTLGYKFSTYAYWW 156
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q + ++++ QSRTIRLP HM + ++K +++L + G + E+A+A L +++
Sbjct: 157 IRQGITRAIAQQSRTIRLPIHMADKLNKIKRVQRELSQKLGHTADVTEIAQALNLEPRQI 216
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD IG Q
Sbjct: 217 RECLQFARQPVSLDMGIGSEQG 238
>gi|414079421|ref|YP_007000845.1| RpoD family RNA polymerase sigma factor SigB [Anabaena sp. 90]
gi|413972700|gb|AFW96788.1| RpoD family RNA polymerase sigma factor SigB [Anabaena sp. 90]
Length = 327
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 120/202 (59%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ +E+ +Q ++ L +E L + P+ ++WAA + EL + G
Sbjct: 32 LLSREQEIIYGKQVQQMMALLEAKEALRKEIDHEPSLSEWAARVNQSETELNHLMVQGKR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q RTIRLP H+ E ++K+ +++L GR P E+A+ L ++
Sbjct: 152 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQTLGRSPTPTEIAKELELEPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 212 REYLNMARQPVSLDVRVGENQD 233
>gi|443311220|ref|ZP_21040852.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442778750|gb|ELR89011.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 383
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/232 (37%), Positives = 145/232 (62%), Gaps = 1/232 (0%)
Query: 193 KSGSTSRRKRPS-VQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREV 251
+ G + RPS ++ D D + + LL A+EE++L+ +Q L++++ L+E
Sbjct: 51 RDGDSLAAARPSGYRKTDSDDAVGAFFKEMARYPLLKADEEVELAKRVQFLVEVDNLQES 110
Query: 252 LSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMN 311
LS + T A+ AAA G+ +R+L ++L G + K KMI SN+RLV+SIAK Y G+
Sbjct: 111 LSSKLNRRATQAETAAAFGLTERQLEQKLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVQ 170
Query: 312 LQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEAT 371
DL+QEG GL R EKFD KG+KFSTYA+WWI+QA+ +++++ +RTIRLP H+VE
Sbjct: 171 FLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQAITRAIANDARTIRLPIHIVEKL 230
Query: 372 YRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
++K+A++++ + R+ E+A+A + ++L + + SL+ ++G
Sbjct: 231 NKLKKAQREIKQKLHRNATENELAQALDTTPEQLRQLQQLRRKSLSLNHRVG 282
>gi|428309492|ref|YP_007120469.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428251104|gb|AFZ17063.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 377
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/176 (44%), Positives = 117/176 (66%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL EE+ L+ +Q L++++ L+E L G P A+ A + +R+L RL G +
Sbjct: 79 LLKPEEEVDLAKNVQFLVEIDQLQERLQANLGRKPAKAELAQQLNMTERQLENRLYRGRV 138
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R EKFD KG+KFSTYA+WW
Sbjct: 139 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRATEKFDPEKGYKFSTYAYWW 198
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLS 401
I+QA+ +++++ +RTIRLP H+VE ++K+A+++L R+PN EE+A+A ++
Sbjct: 199 IRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRELKQGLQRNPNEEELAKALEIT 254
>gi|159896548|ref|YP_001542795.1| RpoD family RNA polymerase sigma factor [Herpetosiphon aurantiacus
DSM 785]
gi|159889587|gb|ABX02667.1| RNA polymerase, sigma 70 subunit, RpoD family [Herpetosiphon
aurantiacus DSM 785]
Length = 400
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 111/152 (73%)
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 335
LRRR++ G ++ + T+N+RLV+S+AK Y G G++L DL+QEG GL+R EKF+ +KG
Sbjct: 153 LRRRIDRGEQAREHLTTANLRLVVSVAKKYIGRGLSLLDLIQEGNVGLIRAVEKFNYTKG 212
Query: 336 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVA 395
FKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE R+ ++L ENGR P++EE+A
Sbjct: 213 FKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINRMMRTARRLTQENGREPSDEELA 272
Query: 396 EATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
+A L+++++ ++ + P SL+ +G ++
Sbjct: 273 QALDLTVEKVRSIRKTSMEPVSLETPVGQEED 304
>gi|411117480|ref|ZP_11389967.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410713583|gb|EKQ71084.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 407
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 132/202 (65%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL +EE++L+ I+ L ++E LR L++ G P+ A+ A A G+ +R+L +L+ +
Sbjct: 109 LLKPDEEVELANQIRYLNEIEELRSQLTQELGRCPSKAELADAVGLTERQLEHQLHRSRV 168
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R EKFD KG+KFSTYA+WW
Sbjct: 169 AKRKMIRSNLRLVVSIAKRYINRGVPFLDLIQEGALGLNRATEKFDPDKGYKFSTYAYWW 228
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q + +++++ SRTIRLP H+VE ++K A++ L + R+P E+AEA ++ ++L
Sbjct: 229 IRQGITRTIANDSRTIRLPVHIVEKLNKLKGAQRDLKRKLNRNPTEAELAEALEVTPEQL 288
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
+ + SL+ ++G +++
Sbjct: 289 QNLQQVHRRSLSLNYRVGKDED 310
>gi|443327806|ref|ZP_21056414.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442792535|gb|ELS02014.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 375
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/199 (40%), Positives = 131/199 (65%), Gaps = 1/199 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ-RELRRRLNYGI 284
LL +EE+ L+ ++ +++ E +R+ L E+ +P+ +WA A G+ REL + L G
Sbjct: 76 LLNTDEEVVLANEVKLMVEAEAIRQDLIEQLDRNPSREEWAQAIGLSSTRELEKFLYRGK 135
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
+ K KMI SN+RLV+SIAK Y G+ DL+QEG GL R EKFD +KG+KFSTYA+W
Sbjct: 136 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRATEKFDPNKGYKFSTYAYW 195
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+QA+ +++++ +RTIRLP H+VE ++K+A++ L + R+P+ +E+A+ + +
Sbjct: 196 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRNLKQKLQRNPSEQELADELKIPPAQ 255
Query: 405 LHAVLLSPKAPRSLDQKIG 423
L +L + SL+ ++G
Sbjct: 256 LRQLLELRRQSLSLNHRVG 274
>gi|170077819|ref|YP_001734457.1| sigma-70 factor [Synechococcus sp. PCC 7002]
gi|169885488|gb|ACA99201.1| sigma-70 factor [Synechococcus sp. PCC 7002]
Length = 328
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/202 (42%), Positives = 124/202 (61%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q L+ L+ R+ L E T +WA AA + ++L+R L G
Sbjct: 32 LLTHEEEIVYGKQVQRLMALQEKRQTLEESLDREATREEWAEAAQLTPKQLQRDLQIGER 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ + DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNLEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q RTIRLP H+ E ++K+ ++QL + GR E+AEA L ++
Sbjct: 152 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKTQRQLAQDLGRAATIAEIAEALELEPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
+ P SLD ++G NQ+
Sbjct: 212 REYFRVSRHPISLDVRVGDNQD 233
>gi|21449377|gb|AAM54109.1|AF453501_35 RNA polymerase sigma factor [Actinosynnema pretiosum subsp.
auranticum]
Length = 348
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/234 (40%), Positives = 134/234 (57%), Gaps = 17/234 (7%)
Query: 191 SVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
+K +T RR + D + YL+A RLLTA++E++L+ ++ L E L +
Sbjct: 31 DIKLAATLRRDAEAANAADSTRA--YLKAI-GRVRLLTADQEVELARRVEAGLYAEHLLD 87
Query: 251 VL-SERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 309
+ + R P ELRR + G KD ++ +N+RLV+SIAK Y G G
Sbjct: 88 LPPAARGSRRPV-------------ELRRVVRDGQRAKDHLLEANLRLVVSIAKRYTGKG 134
Query: 310 MNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVE 369
M L D++QEG GLVR EKFD +KGFKFSTYA WWI+QA+ ++L+DQSRTIRLP HMVE
Sbjct: 135 MALLDVIQEGNLGLVRAVEKFDYAKGFKFSTYATWWIRQAITRALADQSRTIRLPVHMVE 194
Query: 370 ATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
++ + L NGR EEVA ++ +++ + + P SLDQ IG
Sbjct: 195 VVTKLARIERDLLHRNGREATAEEVAVELDVTPEKVVELRQHARTPVSLDQTIG 248
>gi|428777601|ref|YP_007169388.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothece sp. PCC
7418]
gi|428691880|gb|AFZ45174.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothece sp. PCC
7418]
Length = 375
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/220 (40%), Positives = 137/220 (62%)
Query: 204 SVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFA 263
S Q+ Y D + + LL +EE++L+ ++ E R+ L+E+ G PT
Sbjct: 56 SSQKSKYEDTVGAFFKEMARYPLLQPDEEVELAQQVKLAADFEHKRQELAEKLGSPPTKQ 115
Query: 264 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 323
Q A A + +EL R+L G + K +MI SN+RLV+SIAK Y G+ DL+QEG GL
Sbjct: 116 QLAEALEMGVKELDRKLYQGRVAKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGL 175
Query: 324 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYS 383
R AEKFD +KG+KFSTYA+WWI+QA+ +++++ +RTIRLP H+VE ++K+A++ L
Sbjct: 176 NRAAEKFDPNKGYKFSTYAYWWIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRDLKQ 235
Query: 384 ENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
E R+P E+A+A +S +LH +L + SL+ ++G
Sbjct: 236 ELQRNPTEAELAQALEVSQSQLHQLLQLRRQSLSLNHRVG 275
>gi|354565057|ref|ZP_08984233.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353550183|gb|EHC19622.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 389
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 125/197 (63%), Gaps = 1/197 (0%)
Query: 202 RPS-VQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSP 260
RPS + +Y D + + LL +EE++L+ ++ L ++ ++ L + G P
Sbjct: 66 RPSGYNKTEYDDAVGAFFKEMARYPLLKPDEEVELARRVRFLEEVNEIQAALRQELGHQP 125
Query: 261 TFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGC 320
T A AA + +++L RL G + K KMI SN+RLV+SIAK Y G+ DL+QEG
Sbjct: 126 TKASIAAHLQITEKQLENRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGA 185
Query: 321 RGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQ 380
GL R EKFD KG+KFSTYA+WWI+QA+ +++++ +RTIRLP H+VE ++K+A+++
Sbjct: 186 MGLNRATEKFDPDKGYKFSTYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRE 245
Query: 381 LYSENGRHPNNEEVAEA 397
L GR+PN E+AEA
Sbjct: 246 LKQRLGRNPNEIEMAEA 262
>gi|328955627|ref|YP_004372960.1| RNA polymerase sigma-70 subunit RpoD [Coriobacterium glomerans PW2]
gi|328455951|gb|AEB07145.1| RNA polymerase, sigma 70 subunit, RpoD [Coriobacterium glomerans
PW2]
Length = 442
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 126/221 (57%), Gaps = 17/221 (7%)
Query: 211 SDPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWA 266
DP+R LLTA +E M++ AG++ KLE S+R + T A
Sbjct: 138 GDPVRMYLKEIGKVDLLTAADEVDLAMKIEAGLEAAEKLES-----SDRGEIALTRA--- 189
Query: 267 AAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 326
D R L R G+ K +I++N+RLV+SIAK Y G GM+ DL+QEG GL+R
Sbjct: 190 -----DMRRLSRIEQVGLEAKQALISANLRLVVSIAKRYVGRGMHFLDLIQEGNLGLIRA 244
Query: 327 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG 386
EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL E G
Sbjct: 245 VEKFDYEKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLLQELG 304
Query: 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
R P EE+ +S R+ + + P SL+ IG ++
Sbjct: 305 RDPTPEEIGAEMEMSADRVREIQKISQEPVSLETPIGEEED 345
>gi|339444818|ref|YP_004710822.1| hypothetical protein EGYY_12580 [Eggerthella sp. YY7918]
gi|338904570|dbj|BAK44421.1| hypothetical protein EGYY_12580 [Eggerthella sp. YY7918]
Length = 419
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 98/256 (38%), Positives = 142/256 (55%), Gaps = 27/256 (10%)
Query: 184 KAAANV----MSVKSGSTSRRKRPSVQEVDY--SDPLRYLRATTSSSRLLTANEEMQLSA 237
KA +V +S KS S RKR + + DP+R LLTA EE+ L+
Sbjct: 82 KATVDVQLPKVSSKSKVRSARKRSADAGITVLTGDPVRMYLKEIGKVPLLTAAEEIDLAM 141
Query: 238 GIQDLLKLEGLREVLSERCGGSPTFA-QWAAAAGVD-QRELRRRLN----YGILCKDKMI 291
I+ G + T + A G++ +R +RRL GI K ++I
Sbjct: 142 KIE---------------AGVAATEELEKAEDEGIELERREKRRLGRIEQVGIDAKQQLI 186
Query: 292 TSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVR 351
+N+RLV+SIAK Y G GM DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+
Sbjct: 187 EANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAIT 246
Query: 352 KSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLS 411
++++DQ+RTIR+P HMVE ++ ++QL E GR P+ EE+ + GL +R+ +
Sbjct: 247 RAIADQARTIRIPVHMVETINKLVRIQRQLLQELGREPSPEEIGKEMGLPAERVREIQKI 306
Query: 412 PKAPRSLDQKIGINQN 427
+ P SL+ IG ++
Sbjct: 307 SQEPVSLETPIGEEED 322
>gi|257791063|ref|YP_003181669.1| RpoD subfamily RNA polymerase sigma-70 subunit [Eggerthella lenta
DSM 2243]
gi|317488219|ref|ZP_07946788.1| RNA polymerase sigma factor RpoD [Eggerthella sp. 1_3_56FAA]
gi|325830757|ref|ZP_08164141.1| RNA polymerase sigma factor RpoD [Eggerthella sp. HGA1]
gi|257474960|gb|ACV55280.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Eggerthella lenta
DSM 2243]
gi|316912661|gb|EFV34201.1| RNA polymerase sigma factor RpoD [Eggerthella sp. 1_3_56FAA]
gi|325487164|gb|EGC89607.1| RNA polymerase sigma factor RpoD [Eggerthella sp. HGA1]
Length = 409
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/246 (39%), Positives = 137/246 (55%), Gaps = 29/246 (11%)
Query: 193 KSGSTSRRKRPSVQEVDY--SDPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLE 246
KS S RKR + V DP+R LLTA EE M++ AG+ + +LE
Sbjct: 85 KSKVRSVRKRNADASVTMLTGDPVRMYLKEIGKVPLLTAAEEIDLAMKIEAGVAAMEELE 144
Query: 247 GLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLN----YGILCKDKMITSNIRLVISI 301
A G++ +R +RRL GI K ++I +N+RLV+SI
Sbjct: 145 K------------------AEDEGIELERREKRRLGRIEQVGIDAKQQLIEANLRLVVSI 186
Query: 302 AKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI 361
AK Y G GM DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ ++++DQ+RTI
Sbjct: 187 AKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTI 246
Query: 362 RLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQK 421
R+P HMVE ++ ++QL E GR P+ EE+ + GL +R+ + + P SL+
Sbjct: 247 RIPVHMVETINKLVRIQRQLLQELGREPSPEEIGKEMGLPAERVREIQKISQEPVSLETP 306
Query: 422 IGINQN 427
IG ++
Sbjct: 307 IGEEED 312
>gi|428226816|ref|YP_007110913.1| RNA polymerase, sigma subunit, RpsC/SigC [Geitlerinema sp. PCC
7407]
gi|427986717|gb|AFY67861.1| RNA polymerase, sigma subunit, RpsC/SigC [Geitlerinema sp. PCC
7407]
Length = 414
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 133/229 (58%), Gaps = 28/229 (12%)
Query: 225 RLLTANEEMQLSAG--IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRL-- 280
RLL +E + G IQ +++ R+ L+ G P+ +WA AAGVD EL+ L
Sbjct: 90 RLLELRDEAAQAEGGTIQRYVQIIEARDTLTSHLGHRPSLERWAEAAGVDVTELKPILAS 149
Query: 281 --------------------NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGC 320
GI K+ MI +N+RLV+S+AK YQ G+ L DL+QEG
Sbjct: 150 GKQRWAELTGLTIQELEQIQREGIRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGT 209
Query: 321 RGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQ 380
GL R EKFD +KG++FSTYA+WWI+Q + ++++ QSRTIRLP H+ E ++K+A+++
Sbjct: 210 LGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRK 269
Query: 381 LYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR--SLDQKIGINQN 427
+ E GR P E++A ++ ++ VLL + PR SL+ K+G ++
Sbjct: 270 ISQEKGRTPTIEDIARELEMTSPQVREVLL--RVPRSVSLETKVGKEKD 316
>gi|257063660|ref|YP_003143332.1| RNA polymerase sigma factor RpoD [Slackia heliotrinireducens DSM
20476]
gi|256791313|gb|ACV21983.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Slackia
heliotrinireducens DSM 20476]
Length = 394
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 123/221 (55%), Gaps = 17/221 (7%)
Query: 211 SDPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWA 266
DP+R LLT +EE M++ AG+ +LE E E
Sbjct: 90 GDPVRMYLKEIGKVPLLTPSEEVDLAMKIEAGVAATAELEKAEEEGVELDRRERRRLTRV 149
Query: 267 AAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 326
G+D KD++I +N+RLV+SIAK Y G GM DL+QEG GL+R
Sbjct: 150 EQVGLD-------------AKDQLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRA 196
Query: 327 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG 386
EKFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL E G
Sbjct: 197 VEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLLQELG 256
Query: 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
R P+ EE+ E GLS +R+ + + P SL+ IG ++
Sbjct: 257 RDPSPEEIGEKMGLSAERVREIQKLSQEPVSLETPIGEEED 297
>gi|428320222|ref|YP_007118104.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428243902|gb|AFZ09688.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 357
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/212 (40%), Positives = 130/212 (61%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
DP+ L + LLTA EE++L+ +Q+L+ L+ L + L + PT A+ AAA G+
Sbjct: 45 DPVGALFKEMARYPLLTAAEEVELARRVQELVALDELEQRLQQELDRVPTKAELAAALGI 104
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+ +L++ + K KMI+SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD
Sbjct: 105 SETQLQQLRHQCQSAKRKMISSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFD 164
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA+WWI+Q + +++++Q RTIRLP H+VE ++K+ + L R+P
Sbjct: 165 PEKGYKFSTYAYWWIRQGITRTIANQGRTIRLPVHIVEQLNKLKKVYRDLKRSLQRNPTE 224
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
E+A +S + L + + SL+ +IG
Sbjct: 225 TELAREMEVSCEHLRYLQQVRRQSLSLNHRIG 256
>gi|427729632|ref|YP_007075869.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427365551|gb|AFY48272.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 388
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 129/198 (65%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL +EE++L+ ++ L ++ L+E L G PT AQ A + +++L RL G +
Sbjct: 90 LLKPDEEVELAKRVRFLEDVKDLQEALELELGQQPTKAQIADKFEITEKQLENRLYQGRV 149
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R EKFD KG+KFSTYA+WW
Sbjct: 150 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 209
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +++++ +RTIRLP H+VE ++K+A+++L + R+P+ E+AE +S+++L
Sbjct: 210 IRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKFSRNPSEAEIAEFLEMSVQQL 269
Query: 406 HAVLLSPKAPRSLDQKIG 423
+ + SL+ ++G
Sbjct: 270 RQLQQLRRQALSLNHRVG 287
>gi|318041016|ref|ZP_07972972.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CB0101]
Length = 323
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 130/216 (60%), Gaps = 2/216 (0%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGG-SPTFAQWAAAAGVDQ 273
R+LRA LLTA+EE+ L +Q+ L E L R GG +P+ WA++ +
Sbjct: 17 RHLRAIGRVP-LLTADEEISLGRAVQNGRLLLEAAEELKLRAGGEAPSLEAWASSVNLSP 75
Query: 274 RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
R+L+R+L ++M+T+N+RLV+S+A+ ++L DL+QEG GL+R ++FD S
Sbjct: 76 RQLQRQLRLAERASEQMVTANLRLVVSLARRISHRRLDLDDLIQEGTLGLIRAVQRFDPS 135
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
+G+KFSTYA WWI++ + ++L QSRTIRLP HM + R++ + +L GR PN EE
Sbjct: 136 RGYKFSTYATWWIREGMGRALQQQSRTIRLPAHMQDRLQRLRRCQMELRQMLGREPNLEE 195
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLK 429
+AEAT L + L + P SLD G +L+
Sbjct: 196 LAEATELKPLDIREALFRAQEPLSLDSGHGPEDDLR 231
>gi|86608149|ref|YP_476911.1| RNA polymerase sigma factor, group 1 [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86556691|gb|ABD01648.1| RNA polymerase sigma factor, group 1 [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 361
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 124/212 (58%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
DP+ + T + EE++LS IQ L ++ R+ ++ G P+ A A +
Sbjct: 50 DPVDHYLNTIGRVPRIDHAEEIELSRKIQQKLLIDQARQEWRQQRGEDPSDEALAEALQI 109
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
LR R+ G + K+I +N+RLV+S+AK Y G+ DL+QEG GL+R EKF+
Sbjct: 110 SVSTLRSRIRQGEQAQRKLINANLRLVVSVAKKYLNRGVPFLDLIQEGNIGLIRATEKFN 169
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
A +GF+FSTYAHWWI+Q + + +++Q+RTIRLP HMV+ +K ++L GR P
Sbjct: 170 AERGFRFSTYAHWWIRQGITRCIANQARTIRLPVHMVDKVRLLKRTNRELMKLQGRRPTE 229
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
E+AEA G+ +K+L + + P SLD +G
Sbjct: 230 AELAEALGIKVKKLRMIQQAAALPLSLDVPVG 261
>gi|358457491|ref|ZP_09167709.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
gi|357079327|gb|EHI88768.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
Length = 385
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 95/233 (40%), Positives = 132/233 (56%), Gaps = 24/233 (10%)
Query: 198 SRRKRPSVQEVDY--SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSE 254
SRR+ P D +DP+R YLR + LLTA E+ L+ I+
Sbjct: 70 SRRRGPEKPASDAPATDPVRVYLRDIGKVA-LLTAEGEVDLAKRIE-------------- 114
Query: 255 RCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGM 310
G + A A G RR L G + K +++ +N+RLV+S+AK Y GM
Sbjct: 115 --AGVFAAHKLATATGATTPRERRDLEAVEADGNIAKRRLVEANLRLVVSVAKRYVSRGM 172
Query: 311 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 370
D+VQEG GL+R EKFD +KGFKFSTYA WWI+QA+ +SL+DQ+RTIR+P H+VE
Sbjct: 173 PFLDVVQEGNLGLIRAVEKFDYAKGFKFSTYATWWIRQAISRSLADQARTIRIPVHLVEI 232
Query: 371 TYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
R+ ++QL SE GR P+ EE+A L+ +R+ +L+ + P SLD IG
Sbjct: 233 INRLVRVQRQLVSELGRDPSPEELAAEMDLTPQRVREILMISREPVSLDTPIG 285
>gi|88809466|ref|ZP_01124974.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 7805]
gi|88786685|gb|EAR17844.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 7805]
Length = 376
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 115/168 (68%), Gaps = 4/168 (2%)
Query: 262 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCR 321
+ WA +G+D +EL++RL G +D+MI +N+RLV+++AK YQ GM L DLVQEG
Sbjct: 112 YTLWAKESGLDTKELQQRLREGRRARDRMIQANLRLVVAVAKKYQQRGMELLDLVQEGTL 171
Query: 322 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL 381
GL R EKFD ++GF+FSTYA+WWI+Q + ++++ QSRTIRLP H+ E R+K ++++
Sbjct: 172 GLERAVEKFDPTRGFRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNRIKRVQQEI 231
Query: 382 YSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR--SLDQKIGINQN 427
SE GR + ++A+ G+S + + L + PR SL+ ++G +Q+
Sbjct: 232 ASEKGRLASVSDLAKELGVSEETVRQTL--ARVPRSVSLETRVGKDQD 277
>gi|302335781|ref|YP_003800988.1| RNA polymerase sigma-70 subunit RpoD [Olsenella uli DSM 7084]
gi|301319621|gb|ADK68108.1| RNA polymerase, sigma 70 subunit, RpoD [Olsenella uli DSM 7084]
Length = 453
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 86/223 (38%), Positives = 122/223 (54%), Gaps = 21/223 (9%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
DP+R LLTA+EE+ L+ I+ G T AA G
Sbjct: 149 GDPVRMYLKEIGKVDLLTASEEVHLAMKIE---------------AGTEATERLEAADRG 193
Query: 271 ------VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV 324
+QR L R G+ K +I++N+RL +SIAK Y G GM DL+QEG GL+
Sbjct: 194 EIELTRAEQRRLMRIEQVGLEAKQALISANLRLTVSIAKRYVGRGMLFLDLIQEGNLGLI 253
Query: 325 RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSE 384
R EKFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL +
Sbjct: 254 RAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLLQD 313
Query: 385 NGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
GR P EE+ G+S R+ + + P SL+ IG ++
Sbjct: 314 LGRDPTPEEIGAEMGISADRVREIQKISQEPVSLETPIGEEED 356
>gi|19910024|dbj|BAB87263.1| RNA polymerase sigma factor [Cyanophora paradoxa]
Length = 431
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 85/216 (39%), Positives = 128/216 (59%), Gaps = 4/216 (1%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV-DQ 273
RYL+ S LL A +E++L+ I+ KLE ++E + + G PT +WA AA + D
Sbjct: 116 RYLQEIGEIS-LLKAEDEIELAKRIETFRKLEKVKEHMKWKTGVEPTDEEWARAAALSDA 174
Query: 274 RELRRRLNYGILCKDKMITSNIRLVISIAKNY--QGAGMNLQDLVQEGCRGLVRGAEKFD 331
ELR + G L +D+++ +N+R V+++AK Y Q M++QDL+QEG GL+R EKFD
Sbjct: 175 EELRHMVRVGTLARDRLVRANLRWVVAVAKKYHKQRGTMSMQDLIQEGNIGLIRAVEKFD 234
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
G++F+TYA WWI+QA+ +S+ + SR IRLP H E R+K A L GR P
Sbjct: 235 PRMGYRFTTYATWWIRQAITRSIQNSSREIRLPAHRHEKINRIKRATVALSRSLGRQPTE 294
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
E+AE GL R+ + S A ++ + IN++
Sbjct: 295 AEIAEHVGLDPSRMRKFVESAAAVATVSLDVPINES 330
>gi|254421657|ref|ZP_05035375.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family,
putative [Synechococcus sp. PCC 7335]
gi|196189146|gb|EDX84110.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family,
putative [Synechococcus sp. PCC 7335]
Length = 467
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 127/202 (62%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL EE++L+ ++ ++++E E SE PT A+ A A G + +LR++L
Sbjct: 169 LLQPTEEIELARQVRIIVEIEDYSEKASETLKRRPTHAELATAFGYTEGQLRQKLRQARA 228
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K +MI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD KG+KFSTYA+WW
Sbjct: 229 AKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPDKGYKFSTYAYWW 288
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q + +++++ +RTIRLP H+VE ++K+A+++L E R P EVA A ++ ++L
Sbjct: 289 IRQGITRTIANDARTIRLPIHIVEKLNKLKKAQRELRKELQRTPTEVEVAAALEMTPEQL 348
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
+ + SL+ ++G ++
Sbjct: 349 RTLQQVQRKSLSLNHRVGKGED 370
>gi|359458359|ref|ZP_09246922.1| RNA polymerase sigma-70 factor [Acaryochloris sp. CCMEE 5410]
Length = 318
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 120/202 (59%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL EE+ +Q + L+ L++ L PT +WA A + +L++ L G
Sbjct: 23 LLNHEEEIIFGKQVQRFIALQDLKQDLQADLDREPTLTEWADKAELSISQLQKELKLGHK 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
KM+ SN+RLV+SIAK Y A + DL+QEG GL RG EKFD KG++FSTYA+WW
Sbjct: 83 ANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQEGTIGLQRGVEKFDPMKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +++++Q RTIRLP H+ E ++++ R+QL + R P +E+A L+ K++
Sbjct: 143 IRQAMTRAIAEQERTIRLPIHINEKLSKLRKVRRQLSQKLHRDPTIQELAVEMDLTPKKI 202
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + SLD +IG QN
Sbjct: 203 EDYLNYARRSISLDIQIGDQQN 224
>gi|75907421|ref|YP_321717.1| sigma 28 (flagella/sporulation) [Anabaena variabilis ATCC 29413]
gi|75701146|gb|ABA20822.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 378
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 88/231 (38%), Positives = 141/231 (61%), Gaps = 1/231 (0%)
Query: 194 SGSTSRRKRPS-VQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL 252
SG RPS + ++ D + + LL +EE++L+ ++ L ++ L+ L
Sbjct: 47 SGDEMAAARPSGYNKTEHDDAVGAFFKEMARYPLLKPDEEVELARRVRFLEEVRDLQADL 106
Query: 253 SERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
+ G PT AQ AA + +++L RL G + K KMI SN+RLV+SIAK Y G+
Sbjct: 107 QLQLGLHPTKAQVAAQLEITEKQLENRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPF 166
Query: 313 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY 372
DL+QEG GL R EKFD KG+KFSTYA+WWI+QA+ +++++ +RTIRLP H+VE
Sbjct: 167 LDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQAITRAIANDARTIRLPIHIVEKLN 226
Query: 373 RVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
++K+A+++L + R+P+ E+AEA +S+ +L + + SL+ ++G
Sbjct: 227 KLKKAQRELKQKFSRNPSEAEMAEALEISVPQLRQLQQLRRQALSLNHRVG 277
>gi|334119649|ref|ZP_08493734.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333457811|gb|EGK86432.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 357
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 131/212 (61%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
DP+ L + LLTA EE++L+ +Q+L+ L+ + + L + PT A+ AAA G+
Sbjct: 45 DPVGALFKEMARYPLLTATEEVELARRVQELVALDEVEQRLQQELDRVPTKAELAAALGI 104
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+ +L++ + K KMI+SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD
Sbjct: 105 SETQLQQLRHQCQSAKRKMISSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFD 164
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA+WWI+Q + +++++Q RTIRLP H+VE ++K+ + L R+P
Sbjct: 165 PEKGYKFSTYAYWWIRQGITRTIANQGRTIRLPVHIVEQLNKLKKVYRDLRRSLQRNPTE 224
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
E+A ++ ++L + + SL+ +IG
Sbjct: 225 TELAREMQVTCEQLRYLQQVRRQSLSLNHRIG 256
>gi|299472559|emb|CBN79861.1| chloroplast RNA-polymerase sigma factor precursor [Ectocarpus
siliculosus]
Length = 694
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 87/212 (41%), Positives = 130/212 (61%), Gaps = 7/212 (3%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR T + LL +EE+ L IQ + E R+ L G P+ +WA A G+D+ E
Sbjct: 54 YLR-TVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPSEEEWAVALGMDREE 112
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 335
L + L+ K M+ +N+RLV+S+AK Y+ ++ QDL+QEG GLV+ AEKFD +G
Sbjct: 113 LVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQEGTFGLVKAAEKFDPERG 172
Query: 336 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVA 395
FKFSTYA WWIKQ++ + ++DQSR IRLP H+ + RV++A ++ +NG+ P ++E+A
Sbjct: 173 FKFSTYATWWIKQSIMRGIADQSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDDELA 232
Query: 396 EATGLSMKRLH------AVLLSPKAPRSLDQK 421
E +S R+ LS +APR++ K
Sbjct: 233 EHLEVSAVRIQYYRDAAQATLSMEAPRNIASK 264
>gi|428308709|ref|YP_007119686.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428250321|gb|AFZ16280.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 327
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 121/202 (59%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L + L+E+ PT +W D+ L + ++ G
Sbjct: 32 LLTHEQEIVYGKQVQQMMLLMDAKAALAEKLQREPTTKEWTMHVKHDEATLNKIVSQGTW 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+R IRLP H+ E ++K+ +++L + GR+ E+ + L ++
Sbjct: 152 IRQAITRAIAQQARAIRLPIHITEKLNKIKKVQRELSQKFGRNATPAEIGQELDLEPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 212 REYLSIARQPVSLDVRVGDNQD 233
>gi|16332132|ref|NP_442860.1| RNA polymerase sigma factor RpoD [Synechocystis sp. PCC 6803]
gi|383323875|ref|YP_005384729.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383327044|ref|YP_005387898.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383492928|ref|YP_005410605.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384438196|ref|YP_005652921.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451816284|ref|YP_007452736.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|47717353|sp|P74565.1|RPOD_SYNY3 RecName: Full=RNA polymerase sigma factor RpoD
gi|1653761|dbj|BAA18672.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339275229|dbj|BAK51716.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359273195|dbj|BAL30714.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359276365|dbj|BAL33883.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359279535|dbj|BAL37052.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|451782253|gb|AGF53222.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 425
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 71/138 (51%), Positives = 97/138 (70%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
KDKM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WW
Sbjct: 189 AKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 248
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQSRTIRLP H+ E R+K+ K L E R P EE+AE +++++L
Sbjct: 249 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIAEKMEMTIEKL 308
Query: 406 HAVLLSPKAPRSLDQKIG 423
+ S + P SL+ IG
Sbjct: 309 RFIAKSAQLPISLETPIG 326
>gi|3769432|gb|AAC78468.1| RNA polymerase sigma factor 2 [Zea mays]
Length = 349
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 85/206 (41%), Positives = 125/206 (60%), Gaps = 2/206 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR T S LLT + +QLS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 37 YLRGTVSKD-LLTHKQVIQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQSLRISAPE 95
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 335
LR R+ L ++ + SNIRLVISIA Y G++L DL+Q G GL+RG EKFDAS+G
Sbjct: 96 LRARMRESFLAREMLTMSNIRLVISIAHKYDNLGVDLADLIQGGLIGLLRGIEKFDASRG 155
Query: 336 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVA 395
F+ STY +WWI+Q V ++L+D S+T RLP ++ E ++ A+ L + G P E +A
Sbjct: 156 FRISTYVYWWIRQGVSRALADNSKTFRLPTYLHERLLAIRGAKYAL-EDQGIAPTIENIA 214
Query: 396 EATGLSMKRLHAVLLSPKAPRSLDQK 421
E+ +S+K++H + SLDQ+
Sbjct: 215 ESLNISVKKVHNATEAVHKVLSLDQQ 240
>gi|340794551|ref|YP_004760014.1| RNA polymerase sigma factor B [Corynebacterium variabile DSM 44702]
gi|340534461|gb|AEK36941.1| RNA polymerase sigma factor B [Corynebacterium variabile DSM 44702]
Length = 397
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 86/210 (40%), Positives = 126/210 (60%), Gaps = 14/210 (6%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA +E++LS I+ L E L E G T A+ +R+L+ G
Sbjct: 113 LLTAADEVELSQRIEAGLYAEHLLE-----TGEKLTRAR--------KRDLKILAREGRA 159
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
+ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD +KGFKFSTYA WW
Sbjct: 160 ARTHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWW 219
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ + ++DQSRTIRLP H+VE ++ ++++Y GR NEE+AE +G+ ++
Sbjct: 220 IRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQHLGREATNEELAEESGIDESKI 279
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
+L + P SLD +G ++ P FI
Sbjct: 280 ETLLKQSRDPVSLDMPVGSDEE-APLGDFI 308
>gi|427701550|ref|YP_007044772.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
gi|427344718|gb|AFY27431.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
Length = 335
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 141/222 (63%), Gaps = 3/222 (1%)
Query: 208 VDYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGS-PTFAQW 265
V D LR YLR LL+ +E+ L +Q+L+ LE LRE L+ R GG P+
Sbjct: 21 VPTGDSLRSYLRDIGRVP-LLSHEQEITLGRQVQELMVLEELREELTLRSGGEEPSPELL 79
Query: 266 AAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 325
AA AG+ LR+RL+ G K++M+ +N+RLV+S+AK Y M L DL+QEG GLVR
Sbjct: 80 AAEAGLTPALLRKRLHAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVR 139
Query: 326 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSEN 385
G EKFD ++G+KFSTYA+WWI+Q + ++++++SRTIRLP H+ E ++K+ +++L E
Sbjct: 140 GVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITETLNKLKKGQRELSQEL 199
Query: 386 GRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
GR P E+A A L + + +L + P SL+ K+G ++
Sbjct: 200 GRTPTLSELALAVELPEEEVKDLLCRARQPVSLETKVGDGED 241
>gi|119493081|ref|ZP_01624006.1| Sigma 28 (Flagella/Sporulation) [Lyngbya sp. PCC 8106]
gi|119452826|gb|EAW34001.1| Sigma 28 (Flagella/Sporulation) [Lyngbya sp. PCC 8106]
Length = 331
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 126/202 (62%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL ANEE++L+ I+ L+ + L E L+ G P ++ A A G+ + EL + GI+
Sbjct: 33 LLKANEEIELARQIKALVTFKELEEELTHELGRCPQSSELATATGLSEAELNHQFQQGII 92
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI+SN+RLV+SIAK Y G+ DL+QEG GL R EKFD KG+KFSTYA+WW
Sbjct: 93 AKQKMISSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRATEKFDPDKGYKFSTYAYWW 152
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q + +++++Q RT+RLP H+VE +++ + L R P +E+AEA +S ++L
Sbjct: 153 IRQGITRTIANQGRTVRLPVHVVEQLNKLQGIHQDLRRSLRRKPTEDELAEALSISPQQL 212
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
+ + SL+ ++G +N
Sbjct: 213 RLLEQVRRKSLSLNHRVGSEEN 234
>gi|427722651|ref|YP_007069928.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427354371|gb|AFY37094.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 328
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 86/202 (42%), Positives = 128/202 (63%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q+L++L RE L ER TF++WA A + ++ELRR + G
Sbjct: 32 LLTHEEEIVYGKQVQELMRLLAERETLEERLERESTFSEWAEAIKLSEKELRRAVAVGER 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IAK YQ + DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNLEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q RTIRLP H+ E ++K+ ++QL + GR E+AE L +++
Sbjct: 152 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKTQRQLSQDLGRAATIAEIAEELELEPEKI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
+ P SLD ++G N++
Sbjct: 212 REFFRVSRHPISLDVRVGDNKD 233
>gi|17158751|ref|NP_478262.1| transcription initiation factor sigma [Nostoc sp. PCC 7120]
gi|464687|sp|Q03065.1|RPSB_ANASP RecName: Full=RNA polymerase sigma-B factor
gi|424021|pir||B47017 probable transcription initiation factor sigma SigB - Anabaena sp
gi|142112|gb|AAA22046.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
gi|17134700|dbj|BAB77258.1| transcription initiation factor sigma [Nostoc sp. PCC 7120]
Length = 332
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 123/202 (60%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ +E+ + +Q ++ + +E L+E+ PT +WA + + L ++L+ G +
Sbjct: 37 LLSHEQEIFFAQQVQQMMVMFTAKEELAEKLQREPTLQEWADKMQLKEDVLLQQLSQGQI 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV+SIAK YQ + DL+QEG GL RG EKFD + G+KFSTYA+WW
Sbjct: 97 AKQKMIQANLRLVVSIAKKYQKRNLEFLDLIQEGALGLERGVEKFDPTLGYKFSTYAYWW 156
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q + ++++ QSRTIRLP HM + ++K +++L + G E+A+A L ++
Sbjct: 157 IRQGITRAIAQQSRTIRLPIHMADKLNKIKCVQRELSQKLGYIAGVTEIAQALNLEPSQI 216
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD +IG Q+
Sbjct: 217 REYLQLVRQPVSLDMRIGFEQD 238
>gi|186682180|ref|YP_001865376.1| SigH/RpoD family RNA polymerase sigma factor [Nostoc punctiforme
PCC 73102]
gi|186464632|gb|ACC80433.1| RNA polymerase, sigma 70 subunit SigH, RpoD family [Nostoc
punctiforme PCC 73102]
Length = 321
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 124/204 (60%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ + +Q L+ + E L+ +PT ++WA + ++EL ++LN G
Sbjct: 34 LLTQEQEIIFAQEVQQLMTILAESEKLTIELKRTPTLSEWANQMQLSEQELLQQLNQGKK 93
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMIT+N+RLV+SIAK YQ + L DL+QEG GL RG EKF+ + G++FSTYA+WW
Sbjct: 94 AKHKMITANLRLVVSIAKQYQRRNLELMDLIQEGTLGLERGVEKFNPALGYRFSTYAYWW 153
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q + ++++ Q R IRLP H+ E ++K +++L GR P + E+A A L ++
Sbjct: 154 IRQGITRAIAQQGRAIRLPIHINEKLNKIKRVQRELSQTLGRIPTSTEIANALSLKPSQI 213
Query: 406 HAVLLSPKAPRSLDQKIGINQNLK 429
LL SLD ++ ++L+
Sbjct: 214 REFLLLATRTISLDIRVSSEKDLR 237
>gi|413921194|gb|AFW61126.1| RNA polymerase sigma factor 2 [Zea mays]
Length = 504
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 85/206 (41%), Positives = 124/206 (60%), Gaps = 2/206 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR T S LLT + +QLS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 192 YLRGTVSKD-LLTHKQVIQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQSLRISAPE 250
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 335
LR R+ L ++ + SNIRLVISIA Y G++L DL+Q G GL+RG EKFDAS+G
Sbjct: 251 LRARMRESFLAREMLTMSNIRLVISIAHKYDNLGVDLADLIQGGLIGLLRGIEKFDASRG 310
Query: 336 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVA 395
F+ STY +WWI+Q V ++L+D S+T RLP ++ E ++ A+ L + G P E +A
Sbjct: 311 FRISTYVYWWIRQGVSRALADNSKTFRLPTYLHERLIAIRGAKYAL-EDQGIAPTIENIA 369
Query: 396 EATGLSMKRLHAVLLSPKAPRSLDQK 421
E+ +S K++H + SLDQ+
Sbjct: 370 ESLNISEKKVHNATEAVNKVLSLDQQ 395
>gi|254423226|ref|ZP_05036944.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196190715|gb|EDX85679.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 431
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 139/247 (56%), Gaps = 47/247 (19%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGG---------------------SPTFAQ 264
LL +EE+ + +Q ++L LR+ +E+ GG P+ +
Sbjct: 89 LLERDEEVAEAQRVQQHMELLALRDRAAEKTGGLLATYVHLLNTRARLTAQLGHRPSLER 148
Query: 265 WAAAAGVDQRELR------RRL----------------NYGILCKDKMITSNIRLVISIA 302
WA A+GVD +L+ +RL N G K+ MI +N+RLV+S+A
Sbjct: 149 WAKASGVDMPDLKPTLAQGKRLWAEIAGMSVEEIVEIQNEGTRAKEHMIKANLRLVVSVA 208
Query: 303 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 362
K YQ G+ L DL+QEG GL R EKFD +KG++FSTYA+WWI+Q + ++++ QSRTIR
Sbjct: 209 KKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIR 268
Query: 363 LPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR--SLDQ 420
LP H+ E ++K+A++++ GR E++A+ +++ ++ VLL K PR SLD
Sbjct: 269 LPVHITEKLNKIKKAQRKISQTQGRTAKAEDIAKELDMTVAQIREVLL--KVPRSVSLDT 326
Query: 421 KIGINQN 427
K+G +++
Sbjct: 327 KVGKDRD 333
>gi|1769413|dbj|BAA13122.1| RpoD2 sigma factor [Microcystis aeruginosa]
Length = 376
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 81/172 (47%), Positives = 118/172 (68%), Gaps = 2/172 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 284
LL+A EE++L+ ++ L++ E +R+ L E PT +WA A +D +R+L RL G
Sbjct: 78 LLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+W
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAE 396
WI+QA+ +++++ +RTIRLP H+VE ++K+A + L + R+PN E+AE
Sbjct: 198 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKA-QILKQDLQRNPNERELAE 248
>gi|428301525|ref|YP_007139831.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428238069|gb|AFZ03859.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 387
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 119/172 (69%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A+EE++L+ ++ L + + L E+ G P+ A+ AA + +R+L RL G +
Sbjct: 89 LLKADEEVELARRVRFLEEWREAQAALKEKSGNQPSKAEVAAEFSLTERQLENRLYQGRV 148
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R +EKFD KG+KFSTYA+WW
Sbjct: 149 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRASEKFDPDKGYKFSTYAYWW 208
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEA 397
I+QA+ +++++ +RTIRLP H+VE ++K+A+++L + GR+P+ E+AE+
Sbjct: 209 IRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQQLGRNPSEIELAES 260
>gi|17231741|ref|NP_488289.1| group 2 sigma 70-type sigma factor F [Nostoc sp. PCC 7120]
gi|8489803|gb|AAF75759.1|AF262218_1 group 2 sigma 70-type sigma factor F [Nostoc sp. PCC 7120]
gi|17133384|dbj|BAB75948.1| group 2 sigma 70-type sigma factor F [Nostoc sp. PCC 7120]
Length = 390
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 87/231 (37%), Positives = 140/231 (60%), Gaps = 1/231 (0%)
Query: 194 SGSTSRRKRPS-VQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL 252
SG RPS + ++ D + + LL +EE++L+ ++ L ++ L+ L
Sbjct: 59 SGDEMAAARPSGYNKTEHDDAVGAFFKEMARYPLLKPDEEVELARRVRFLEEVRDLQADL 118
Query: 253 SERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
+ G PT AQ A + +++L RL G + K KMI SN+RLV+SIAK Y G+
Sbjct: 119 QLQIGQHPTKAQVAGQLEITEKQLENRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPF 178
Query: 313 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY 372
DL+QEG GL R EKFD KG+KFSTYA+WWI+QA+ +++++ +RTIRLP H+VE
Sbjct: 179 LDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQAITRAIANDARTIRLPIHIVEKLN 238
Query: 373 RVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
++K+A+++L + R+P+ E+AEA +S+ +L + + SL+ ++G
Sbjct: 239 KLKKAQRELKQKFSRNPSEAEMAEALEISVPQLRQLQQLRRQALSLNHRVG 289
>gi|139436983|ref|ZP_01771143.1| Hypothetical protein COLAER_00117 [Collinsella aerofaciens ATCC
25986]
gi|133776630|gb|EBA40450.1| RNA polymerase sigma factor RpoD [Collinsella aerofaciens ATCC
25986]
Length = 454
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 123/223 (55%), Gaps = 29/223 (13%)
Query: 211 SDPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWA 266
DP+R LLTA+EE M++ AG++ KLE A
Sbjct: 150 GDPVRMYLKEIGKVDLLTASEEVDLAMKIEAGLEATEKLE-------------------A 190
Query: 267 AAAG------VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGC 320
A AG + R L R N G+ K +I++N+RLV+SIAK Y G GM DL+QEG
Sbjct: 191 ADAGELELTRAEIRRLTRIENVGLEAKQALISANLRLVVSIAKRYVGRGMLFLDLIQEGN 250
Query: 321 RGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQ 380
GL+R EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++Q
Sbjct: 251 LGLIRAVEKFDYQKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQ 310
Query: 381 LYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
L + GR P EE+ +S R+ + + P SL+ IG
Sbjct: 311 LLQDLGRDPTPEEIGAEMDMSADRVREIQKISQEPVSLETPIG 353
>gi|291302005|ref|YP_003513283.1| RpoD subfamily RNA polymerase sigma-70 subunit [Stackebrandtia
nassauensis DSM 44728]
gi|290571225|gb|ADD44190.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stackebrandtia
nassauensis DSM 44728]
Length = 323
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 127/219 (57%), Gaps = 25/219 (11%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQW---AA 267
+D +R RL+ A EE+ L+ I+ L FA+W
Sbjct: 22 TDSVRAYLNGIGKHRLINAAEEVDLAKAIETGL------------------FAEWRLSDP 63
Query: 268 AAGVD----QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 323
A +D +R+LR+ + G K ++ +N+RLV+SIAK Y G G+ L DL+QEG GL
Sbjct: 64 ARPIDDLQLERDLRQIVAEGRRAKSMLLKANLRLVVSIAKRYVGRGVALLDLIQEGNLGL 123
Query: 324 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYS 383
+R EKFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P H E R+ + R++L +
Sbjct: 124 IRAVEKFDYTKGFKFSTYATWWIRQAITRAMADQARTIRVPAHTAEQINRIAKIRRELTA 183
Query: 384 ENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKI 422
E GR P +EE+AE GL R+ +L + P SLDQ +
Sbjct: 184 EQGREPRHEEIAERMGLEPYRVLELLSYDRDPISLDQPV 222
>gi|359145132|ref|ZP_09178962.1| RNA polymerase, sigma 70 subunit, RpoD subfamily protein
[Streptomyces sp. S4]
Length = 357
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/162 (48%), Positives = 107/162 (66%), Gaps = 1/162 (0%)
Query: 262 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCR 321
A A AG+ R+LRR + G K ++I +N+RLV+S+AK Y G G+ + DLVQEG
Sbjct: 97 LAGGCADAGL-ARDLRRLVVLGERAKGRLIEANLRLVVSVAKRYTGRGLTMLDLVQEGNL 155
Query: 322 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL 381
GL+R EKFD ++GFKFSTYA WWI+QA+ ++L+DQ+RTIR+P H+VE RV ++ L
Sbjct: 156 GLIRAVEKFDYTRGFKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRTQRAL 215
Query: 382 YSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
E GR P EEV E GLS +++ VL + P SL +G
Sbjct: 216 LQEAGREPGAEEVGERLGLSAEKVEEVLRLAREPISLHAPVG 257
>gi|427706144|ref|YP_007048521.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427358649|gb|AFY41371.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 316
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 126/202 (62%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT+++E+ +Q ++ +EG ++ LS++ P A+ A + E+ + L G
Sbjct: 21 LLTSDQEITYGRQVQQMIAIEGQKKQLSQQLHREPKLAELADFVNKSETEVTQILQLGQR 80
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+T+N+RLV+SIAK YQ + L DL+QEG GL RG EKFD ++G+K STYA+WW
Sbjct: 81 AKQKMVTANLRLVVSIAKKYQRRNLELLDLIQEGAIGLQRGIEKFDPNRGYKLSTYAYWW 140
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I QA+ ++++++SR +RLP H+ E ++K+ +++L+ GR E+A+ + ++
Sbjct: 141 ISQAITRAIAEKSRAVRLPIHVNEKLNQIKKVQRELFQTLGRRATVTEIAQKLDIQASQI 200
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + A SLD K+G NQ+
Sbjct: 201 REYLSAASATISLDLKVGDNQD 222
>gi|158336372|ref|YP_001517546.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|158306613|gb|ABW28230.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 84/212 (39%), Positives = 125/212 (58%), Gaps = 1/212 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR S LL +E+ +Q L L+ +++ L + PT +WA A V +
Sbjct: 14 YLREI-SRFPLLNHEQEVIFGKQVQRLTALQEMKQELQDHLDREPTQKEWAEKAQVSVAQ 72
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 335
L++ L G KM+ SN+RLV+SIAK Y A + DL+QEG GL RG EKFD KG
Sbjct: 73 LQKELKLGHKANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQEGTIGLQRGVEKFDPMKG 132
Query: 336 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVA 395
++FSTYA+WWI+QA+ +++++Q RTIRLP H+ E ++++ R+QL + R P +E+A
Sbjct: 133 YRFSTYAYWWIRQAMTRAIAEQERTIRLPIHINEKLSKLRKVRRQLSQKLHRDPTVQELA 192
Query: 396 EATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
L+ K++ L + SLD +IG QN
Sbjct: 193 VEMDLAPKKIEDYLNYARRSISLDIQIGDQQN 224
>gi|359459297|ref|ZP_09247860.1| RNA polymerase sigma-70 factor [Acaryochloris sp. CCMEE 5410]
Length = 318
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 84/212 (39%), Positives = 125/212 (58%), Gaps = 1/212 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR S LL +E+ +Q L L+ +++ L + PT +WA A V +
Sbjct: 14 YLREI-SRFPLLNHEQEVIFGKQVQRLTALQEMKQELQDHLDREPTQQEWAEKAQVSVAQ 72
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 335
L++ L G KM+ SN+RLV+SIAK Y A + DL+QEG GL RG EKFD KG
Sbjct: 73 LQKELKLGHKANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQEGTIGLQRGVEKFDPMKG 132
Query: 336 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVA 395
++FSTYA+WWI+QA+ +++++Q RTIRLP H+ E ++++ R+QL + R P +E+A
Sbjct: 133 YRFSTYAYWWIRQAMTRAIAEQERTIRLPIHINEKLSKLRKVRRQLSQKLHRDPTVQELA 192
Query: 396 EATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
L+ K++ L + SLD +IG QN
Sbjct: 193 VEMDLAPKKIEDYLNYARRSISLDIQIGDQQN 224
>gi|449019011|dbj|BAM82413.1| sigma subunit for chloroplast RNA polymerase [Cyanidioschyzon
merolae strain 10D]
Length = 649
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 98/267 (36%), Positives = 135/267 (50%), Gaps = 26/267 (9%)
Query: 203 PSVQEVDYS--DP------------------------LRYLRATTSSSRLLTANEEMQLS 236
PS++E+DYS DP LR+ +LT EE+ LS
Sbjct: 289 PSIRELDYSEDDPSDNEPLAWETYPETPRARSSESSTLRWYLRMIGRVDMLTPEEEVSLS 348
Query: 237 AGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIR 296
I LL E R L +PT + A GVD RR L KD+M+ +N+R
Sbjct: 349 RQISRLLHWERKRIELHGALDRAPTDDELAEHLGVDPERFRRNLAEARRAKDRMVAANLR 408
Query: 297 LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD 356
LV+SIAK Y G+ L+DL+QEG GL+R AEKFD +G +FSTYA WW+KQ+V ++L+D
Sbjct: 409 LVVSIAKRYMRKGLPLEDLIQEGSLGLIRAAEKFDDRRGCRFSTYATWWVKQSVMRALAD 468
Query: 357 QSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR 416
Q R +RLP HM + V++A + L E G P ++ E G+S KRL +
Sbjct: 469 QGRIVRLPVHMHDRILAVRKAARDLSIERGCEPTEADICERLGISRKRLRELRSLAVQTI 528
Query: 417 SLDQKIGINQNLKPSVCFILNLADSLI 443
SL+ + N S LADS++
Sbjct: 529 SLESSVRFGNNQSGSERDRTTLADSIV 555
>gi|300781025|ref|ZP_07090879.1| RNA polymerase principal sigma factor SigB [Corynebacterium
genitalium ATCC 33030]
gi|300532732|gb|EFK53793.1| RNA polymerase principal sigma factor SigB [Corynebacterium
genitalium ATCC 33030]
Length = 330
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 71/146 (48%), Positives = 101/146 (69%), Gaps = 1/146 (0%)
Query: 290 MITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQA 349
++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD SKGFKFSTYA WWI+QA
Sbjct: 97 LLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYSKGFKFSTYATWWIRQA 156
Query: 350 VRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVL 409
+ + ++DQSRTIRLP H+VE ++ R+++Y GR P+NEE+AE +G+ ++ +L
Sbjct: 157 ITRGMADQSRTIRLPVHLVEQVNKLSRIRREMYQSLGREPSNEELAEESGIDESKIEMLL 216
Query: 410 LSPKAPRSLDQKIGINQNLKPSVCFI 435
+ P SLD +G ++ P FI
Sbjct: 217 RQSRDPVSLDMPVGADEE-APLGDFI 241
>gi|453073916|ref|ZP_21976714.1| RNA polymerase sigma factor SigB [Rhodococcus triatomae BKS 15-14]
gi|452765402|gb|EME23659.1| RNA polymerase sigma factor SigB [Rhodococcus triatomae BKS 15-14]
Length = 323
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 90/248 (36%), Positives = 143/248 (57%), Gaps = 18/248 (7%)
Query: 192 VKSGSTSRRKRPSVQEVDYSDP----LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEG 247
+ S +T+RR RP+ +++D P +R + LLTA +E++L+ I+ L
Sbjct: 1 MTSPTTTRRARPTAEDLDAQSPSADLVRVYLNGIGRTALLTAADEVELAKRIEAGLYAAH 60
Query: 248 LREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQG 307
+ E +R S +R+L + G + ++ +N+RLV+S+AK Y G
Sbjct: 61 VLET-GKRLSASK------------KRDLAAIVRDGEAARRHLLEANLRLVVSLAKRYTG 107
Query: 308 AGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHM 367
GM L DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+
Sbjct: 108 RGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHL 167
Query: 368 VEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
VE ++ +++L+ + GR +EE+AE +G+ ++ +L + P SLD +G ++
Sbjct: 168 VEQVNKLARIKRELHQQLGREATDEELAEESGIPAAKIADLLDHSRDPVSLDMPVGSDEE 227
Query: 428 LKPSVCFI 435
P FI
Sbjct: 228 -APLGDFI 234
>gi|402829507|ref|ZP_10878383.1| RNA polymerase sigma factor RpoD [Slackia sp. CM382]
gi|402284488|gb|EJU32991.1| RNA polymerase sigma factor RpoD [Slackia sp. CM382]
Length = 394
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 123/219 (56%), Gaps = 21/219 (9%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFA-QWAAAA 269
DP+R LLTA EE+ L+ I+ G + T + A
Sbjct: 90 GDPVRMYLKEIGKVPLLTAAEEIDLAMKIE---------------AGVAATAELERAEDE 134
Query: 270 GV-----DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV 324
G+ D+R L R G+ K ++I +N+RLV+SIAK Y G GM DL+QEG GL+
Sbjct: 135 GIELNRRDKRRLTRVEAVGLDAKQQLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLI 194
Query: 325 RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSE 384
R EKFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL +
Sbjct: 195 RAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLLQD 254
Query: 385 NGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
R P EE+ E GLS +R+ + + P SL+ IG
Sbjct: 255 LNRDPTPEEIGEKMGLSAERVREIQKISQEPVSLETPIG 293
>gi|87300555|ref|ZP_01083397.1| Putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 5701]
gi|87284426|gb|EAQ76378.1| Putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 5701]
Length = 398
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/213 (40%), Positives = 128/213 (60%), Gaps = 26/213 (12%)
Query: 239 IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRR-------------------- 278
+Q ++ LE +R+ L+ R P+ QWA A + ELRR
Sbjct: 89 LQAMVDLEVVRQRLASRLTHQPSHGQWAEACDLPVAELRRLLQEGHRTWAACLDLSLSDL 148
Query: 279 --RLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF 336
RL G +D+MI +N+RLV+++AK YQ G+ L DLVQEG GL R EK+D ++GF
Sbjct: 149 QQRLLRGRRARDRMIQANLRLVVAVAKKYQKRGVELLDLVQEGTLGLERAVEKYDPTRGF 208
Query: 337 KFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAE 396
+FSTYA+WWI+Q V ++++ QSRTIRLP H+ E R+K+A++Q S++GR + E+AE
Sbjct: 209 RFSTYAYWWIRQGVTRAIATQSRTIRLPVHVTEKLNRIKKAQRQFASDHGRTASLAELAE 268
Query: 397 ATGLSMKRLHAVLLSPKAPR--SLDQKIGINQN 427
A S + + LL + PR SL+ K+G +Q+
Sbjct: 269 ALQWSEEAVRLTLL--RVPRSISLEAKVGRDQD 299
>gi|67925121|ref|ZP_00518496.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|67853040|gb|EAM48424.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
Length = 374
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 120/172 (69%), Gaps = 1/172 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ-RELRRRLNYGI 284
LL A EE++L+ +Q LL++E ++ L E +P+ A+ A A G + ++ RL+ G
Sbjct: 75 LLNAEEEVELAQQVQFLLEVEETKQRLKEELQRTPSKAECAEALGFETAKQFEHRLHKGR 134
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
+ K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+W
Sbjct: 135 IAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 194
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAE 396
WI+QA+ +++++ +RTIRLP H+VE ++K+A++ L + R+PN +E+A+
Sbjct: 195 WIRQAITRTIANDARTIRLPIHVVEKLNKLKKAQRVLKQKLQRNPNEKELAD 246
>gi|427709818|ref|YP_007052195.1| RNA polymerase, sigma subunit, RpsC/SigC [Nostoc sp. PCC 7107]
gi|427362323|gb|AFY45045.1| RNA polymerase, sigma subunit, RpsC/SigC [Nostoc sp. PCC 7107]
Length = 416
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/237 (37%), Positives = 136/237 (57%), Gaps = 31/237 (13%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 274
RYLR T + AN Q A + L+L ++E L+ G P+ +WAA AGV
Sbjct: 89 RYLRMRT-----VLANAAKQGDAVVSPYLRLIEVQERLASELGHRPSLERWAATAGVQLS 143
Query: 275 ELRRRLN----------------------YGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
+L+ L+ G+ K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 144 DLKPTLSEGKRRWAEIAKITVEELEQIQSQGLQSKEHMIKANLRLVVSVAKKYQNRGLEL 203
Query: 313 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY 372
DLVQEG GL R EKFD +KG++FSTYA+WWI+Q + ++++ SRTIRLP H+ E
Sbjct: 204 LDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLN 263
Query: 373 RVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR--SLDQKIGINQN 427
++K+A++++ E GR P E++A ++ ++ VLL + PR SL+ K+G +++
Sbjct: 264 KIKKAQRKIAQEKGRTPTLEDLAIELEMTPSQVREVLL--RVPRSVSLETKVGKDKD 318
>gi|428205323|ref|YP_007089676.1| RNA polymerase, sigma subunit, RpsC/SigC [Chroococcidiopsis
thermalis PCC 7203]
gi|428007244|gb|AFY85807.1| RNA polymerase, sigma subunit, RpsC/SigC [Chroococcidiopsis
thermalis PCC 7203]
Length = 416
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/233 (38%), Positives = 133/233 (57%), Gaps = 31/233 (13%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 274
RYLR R L + + + I+ + L +E L+ G P+ +WAA+AG+
Sbjct: 89 RYLRM-----RALCVSHAAKDDSIIKTYITLIEAQERLTSELGHRPSLERWAASAGISVM 143
Query: 275 ELRRRL----------------------NYGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
EL+ L N GI K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 144 ELKPALAVGKRRWAEIAKITVEELEQIQNDGIHAKEHMIKANLRLVVSVAKKYQNRGLEL 203
Query: 313 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY 372
DLVQEG GL R EKFD +KG++FSTYA+WWI+Q + ++++ QSRTIRLP H+ E
Sbjct: 204 LDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLN 263
Query: 373 RVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR--SLDQKIG 423
++K+A+++L E GR P E++A ++ ++ VLL + PR SL+ K+G
Sbjct: 264 KIKKAQRKLAQEKGRTPTIEDIALELEMTAPQVREVLL--RVPRSVSLETKVG 314
>gi|296269171|ref|YP_003651803.1| RpoD subfamily RNA polymerase sigma-70 [Thermobispora bispora DSM
43833]
gi|296091958|gb|ADG87910.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermobispora
bispora DSM 43833]
Length = 367
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 126/208 (60%), Gaps = 15/208 (7%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR LLTA EE++L+ I+ L E + L E+ AAG++ E
Sbjct: 76 YLREIGKVP-LLTAEEEVELAKAIEAGLFAE---DKLCEK-----------KAAGIECPE 120
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 335
L + GI K ++I +N+RLV+SIAK Y G GM DL+QEG GL+R EKFD +KG
Sbjct: 121 LEDLVWEGIRAKQRLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKG 180
Query: 336 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVA 395
+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL+ + GR P EE+A
Sbjct: 181 YKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLHQDLGREPTPEEIA 240
Query: 396 EATGLSMKRLHAVLLSPKAPRSLDQKIG 423
+ L ++R+ + + P SL IG
Sbjct: 241 KEMDLPVERVVEIQRIAQEPVSLQSPIG 268
>gi|336177646|ref|YP_004583021.1| RpoD subfamily RNA polymerase sigma-70 subunit [Frankia symbiont of
Datisca glomerata]
gi|334858626|gb|AEH09100.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia symbiont
of Datisca glomerata]
Length = 392
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/221 (38%), Positives = 126/221 (57%), Gaps = 20/221 (9%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SDP+R LLTA EE+ L+ I+ G + AAA
Sbjct: 92 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE----------------AGLFASEKLAAATR 135
Query: 271 VDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 326
++RR L G + K K++ +N+RLV+SIAK Y G GM DL+QEG GL+R
Sbjct: 136 KTSPQMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRA 195
Query: 327 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG 386
EKFD +KG+KFSTYA WWI+QAV ++++DQ+RTIR+P HMVE ++ ++QL + G
Sbjct: 196 VEKFDYTKGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLG 255
Query: 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
R P+ EE+A+ L+ ++ +L + P SL+ IG ++
Sbjct: 256 REPSPEEIAKEMDLTPDKVREILKVSQEPVSLETPIGEEED 296
>gi|38233998|ref|NP_939765.1| RNA polymerase sigma factor SigB [Corynebacterium diphtheriae NCTC
13129]
gi|375291083|ref|YP_005125623.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae 241]
gi|376243018|ref|YP_005133870.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae CDCE
8392]
gi|376245915|ref|YP_005136154.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC01]
gi|376248702|ref|YP_005140646.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC04]
gi|376251501|ref|YP_005138382.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC03]
gi|376257315|ref|YP_005145206.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae VA01]
gi|376287931|ref|YP_005160497.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae BH8]
gi|376290620|ref|YP_005162867.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae C7
(beta)]
gi|376293422|ref|YP_005165096.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC02]
gi|419860982|ref|ZP_14383622.1| RNA polymerase sigma factor SigB [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
gi|38605711|sp|P33118.2|RPSB_CORDI RecName: Full=RNA polymerase sigma factor SigB
gi|38200260|emb|CAE49944.1| RNA polymerase sigma factor [Corynebacterium diphtheriae]
gi|371580754|gb|AEX44421.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae 241]
gi|371585265|gb|AEX48930.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae BH8]
gi|372104016|gb|AEX67613.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae C7
(beta)]
gi|372106260|gb|AEX72322.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae CDCE
8392]
gi|372108545|gb|AEX74606.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC01]
gi|372110745|gb|AEX76805.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC02]
gi|372113005|gb|AEX79064.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC03]
gi|372115270|gb|AEX81328.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC04]
gi|372119832|gb|AEX83566.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae VA01]
gi|387982666|gb|EIK56167.1| RNA polymerase sigma factor SigB [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
Length = 329
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 108/163 (66%), Gaps = 1/163 (0%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L+ + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 79 KRDLKVLVKEGRKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 138
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
SKGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ ++++Y + GR NE
Sbjct: 139 SKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQQLGREATNE 198
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
E+AE +G+ ++ +L + P SLD +G ++ P FI
Sbjct: 199 ELAEESGIEESKIEMLLRQSRDPVSLDMPVGADEE-APLGDFI 240
>gi|429730663|ref|ZP_19265309.1| Sigma-70 region 2 [Corynebacterium durum F0235]
gi|429147101|gb|EKX90131.1| Sigma-70 region 2 [Corynebacterium durum F0235]
Length = 329
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/225 (39%), Positives = 130/225 (57%), Gaps = 13/225 (5%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+D +R + LLTA +E+QL+ I+ L E L E E T A
Sbjct: 29 ADLVRVYLNGIGKTALLTAEDEVQLAQTIEVGLYAEHLLENSEEPL----TRAM------ 78
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
+R+L+ G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKF
Sbjct: 79 --KRDLKVLARQGKHARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 136
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++LY GR
Sbjct: 137 DYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKRELYQNLGREAT 196
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
NEE+AE +G+ ++ +L + P SLD +G ++ P FI
Sbjct: 197 NEELAEESGIDESKIELLLRQSRDPVSLDMPVGADEE-APLGDFI 240
>gi|326512474|dbj|BAJ99592.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 506
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/206 (41%), Positives = 122/206 (59%), Gaps = 2/206 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR T S LLT + + LS I+D + L+ R L+E G P++ Q A + + E
Sbjct: 194 YLRGTVSKE-LLTHKQVVHLSKKIKDGIWLQQQRSKLTEILGNEPSYKQMAQSLRISTPE 252
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 335
LR R+ L ++ + SNIRLVISIA+ Y G+ L DL+Q G GL+RG EKFDAS+G
Sbjct: 253 LRSRMRESFLAREVLTMSNIRLVISIAQKYDKLGVELSDLIQGGLIGLLRGIEKFDASRG 312
Query: 336 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVA 395
F+ STY +WWI+Q V ++L+D SRT RLP +M E ++ A+ L + G P + +A
Sbjct: 313 FRISTYVYWWIRQGVSRALADNSRTFRLPTYMHERLIAIRAAKYAL-EDQGVSPTTQNIA 371
Query: 396 EATGLSMKRLHAVLLSPKAPRSLDQK 421
E +S K++H + SLDQ+
Sbjct: 372 ELLNISEKKVHNATEAVNKALSLDQQ 397
>gi|256827331|ref|YP_003151290.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Cryptobacterium curtum
DSM 15641]
gi|256583474|gb|ACU94608.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Cryptobacterium curtum
DSM 15641]
Length = 422
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 128/219 (58%), Gaps = 14/219 (6%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
DP+R LLTA EE+ L+ +K+E E G A+ A +
Sbjct: 118 DPVRMYLKEIGKVPLLTAAEEIDLA------MKIEAGVE-----AGEQLEAAEADNAEEL 166
Query: 272 DQRELRR--RLN-YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 328
+RE RR R+ G+ K ++I +N+RLV+SIAK Y G GM DL+QEG GL+R E
Sbjct: 167 SRREHRRLTRIEAVGLDAKQQLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVE 226
Query: 329 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH 388
KFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL E GR
Sbjct: 227 KFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLLQELGRE 286
Query: 389 PNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
P EE+AE L+ R+ + + P SL+ IG ++
Sbjct: 287 PTPEEIAEEMDLTPDRVREIQKISQEPVSLETPIGEEED 325
>gi|375293289|ref|YP_005127828.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae INCA
402]
gi|376254504|ref|YP_005142963.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae PW8]
gi|371582960|gb|AEX46626.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae INCA
402]
gi|372117588|gb|AEX70058.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae PW8]
Length = 329
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 108/163 (66%), Gaps = 1/163 (0%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L+ + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 79 KRDLKVLVKEGRKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 138
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
SKGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ ++++Y + GR NE
Sbjct: 139 SKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQQLGREATNE 198
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
E+AE +G+ ++ +L + P SLD +G ++ P FI
Sbjct: 199 ELAEESGIEESKIEMLLRQSRDPVSLDMPVGADEE-APLGDFI 240
>gi|33864481|ref|NP_896041.1| type II alternative RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9313]
gi|33641261|emb|CAE22391.1| Putative type II alternative RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9313]
Length = 376
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/168 (44%), Positives = 112/168 (66%), Gaps = 4/168 (2%)
Query: 262 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCR 321
+ W A G+D EL+R L G KD+MI +N+RLV+++AK YQ G+ L DLVQEG
Sbjct: 112 YKTWGALTGLDPLELKRSLRAGRRAKDQMIQANLRLVVAVAKKYQQRGIELLDLVQEGTL 171
Query: 322 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL 381
GL R EKFD ++GF+FSTYA+WWI+Q + ++++ QSRTIRLP H+ E R+K ++++
Sbjct: 172 GLERAVEKFDPTRGFRFSTYAYWWIRQGITRAIATQSRTIRLPMHITEKLNRIKRVQQEI 231
Query: 382 YSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR--SLDQKIGINQN 427
S GR + ++A+A GLS + + L+ + PR SL+ +IG Q+
Sbjct: 232 ASSQGRLASIADLAKALGLSEETVRLTLM--RVPRSISLETRIGQEQD 277
>gi|113474981|ref|YP_721042.1| RNA polymerase subunit sigma 28 [Trichodesmium erythraeum IMS101]
gi|110166029|gb|ABG50569.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 496
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/214 (39%), Positives = 127/214 (59%), Gaps = 4/214 (1%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
Y + S +RL EE+ L+ I LL LE + E L E+ SP +WA A + + E
Sbjct: 192 YYKQVNSFARL-HPEEEIHLAHQIDGLLALEKIYEKLEEKLNRSPNEIEWATEAKMSKWE 250
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 335
L RL G K++M+T+N+RLV S+AK YQ G++ QDL+QEG GL+R EKFD +KG
Sbjct: 251 LCDRLEQGRRAKNQMVTANLRLVTSVAKRYQNRGLDFQDLIQEGVIGLLRATEKFDHTKG 310
Query: 336 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP-NNEEV 394
+KFSTY WWI+QA+ +++ D SR +RLP ++ E ++K+ KQ+ E P EEV
Sbjct: 311 YKFSTYGIWWIRQAITRAICDYSRIVRLPVYLYETISQIKKIVKQISIECS--PLTAEEV 368
Query: 395 AEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNL 428
A ++ ++L ++ + SLD I +N+
Sbjct: 369 ATRMEMTTEKLQFIIECAQETLSLDYPINKGENI 402
>gi|307155201|ref|YP_003890585.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306985429|gb|ADN17310.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 295
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 79/183 (43%), Positives = 115/183 (62%), Gaps = 21/183 (11%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A +E++L+ +Q ++ L ++ +P E +R + G
Sbjct: 21 LLNAQQEIELATQVQKMM-------ALIDKENPTP--------------EEKRIIQQGKR 59
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV+SIAK YQ G++ DL+QEG GL+RG EKFD SKG+KFSTYA+WW
Sbjct: 60 AKRKMINANLRLVVSIAKKYQRRGLSFLDLIQEGSIGLIRGVEKFDPSKGYKFSTYAYWW 119
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQSRTIRLP H+ E+ ++K +QL E GR P +E+A A LS+ L
Sbjct: 120 IRQAMTRAIADQSRTIRLPSHLTESLNKLKRVTRQLTGELGRRPTEQELANALELSLHEL 179
Query: 406 HAV 408
HA+
Sbjct: 180 HAI 182
>gi|124024644|ref|YP_001018951.1| type II alternative RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9303]
gi|123964930|gb|ABM79686.1| Putative type II alternative RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9303]
Length = 376
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/168 (44%), Positives = 112/168 (66%), Gaps = 4/168 (2%)
Query: 262 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCR 321
+ W A G+D EL+R L G KD+MI +N+RLV+++AK YQ G+ L DLVQEG
Sbjct: 112 YKTWGALTGLDPLELKRSLRAGRRAKDQMIQANLRLVVAVAKKYQQRGIELLDLVQEGTL 171
Query: 322 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL 381
GL R EKFD ++GF+FSTYA+WWI+Q + ++++ QSRTIRLP H+ E R+K ++++
Sbjct: 172 GLERAVEKFDPARGFRFSTYAYWWIRQGITRAIATQSRTIRLPMHITEKLNRIKRVQQEI 231
Query: 382 YSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR--SLDQKIGINQN 427
S GR + ++A+A GLS + + L+ + PR SL+ +IG Q+
Sbjct: 232 ASNQGRLASIADLAKALGLSEETVRLTLM--RVPRSISLETRIGQEQD 277
>gi|421739056|ref|ZP_16177384.1| RNA polymerase sigma factor, sigma-70 family [Streptomyces sp. SM8]
gi|406692448|gb|EKC96141.1| RNA polymerase sigma factor, sigma-70 family [Streptomyces sp. SM8]
Length = 357
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/162 (48%), Positives = 107/162 (66%), Gaps = 1/162 (0%)
Query: 262 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCR 321
A A AG+ R+LRR + G K ++I +N+RLV+S+AK Y G G+ + DLVQEG
Sbjct: 97 LAGGCADAGL-ARDLRRLVVLGERAKGRLIEANLRLVVSVAKRYTGRGLTMLDLVQEGNL 155
Query: 322 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL 381
GL+R EKFD ++GFKFSTYA WWI+QA+ ++L+DQ+RTIR+P H+VE RV ++ L
Sbjct: 156 GLIRAVEKFDYTRGFKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRTQRAL 215
Query: 382 YSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
E GR P EEV E GLS +++ VL + P SL +G
Sbjct: 216 LQEAGREPAAEEVGERLGLSAEKVEEVLRLAREPISLHAPVG 257
>gi|269215371|ref|ZP_06159225.1| RNA polymerase sigma factor RpoD [Slackia exigua ATCC 700122]
gi|269131227|gb|EEZ62301.1| RNA polymerase sigma factor RpoD [Slackia exigua ATCC 700122]
Length = 383
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 123/219 (56%), Gaps = 21/219 (9%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFA-QWAAAA 269
DP+R LLTA EE+ L+ I+ G + T + A
Sbjct: 79 GDPVRMYLKEIGKVPLLTAAEEIDLAMKIE---------------AGVAATAELERAEDE 123
Query: 270 GV-----DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV 324
G+ D+R L R G+ K ++I +N+RLV+SIAK Y G GM DL+QEG GL+
Sbjct: 124 GIELNRRDKRRLTRVEAVGLDAKQQLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLI 183
Query: 325 RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSE 384
R EKFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL +
Sbjct: 184 RAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLLQD 243
Query: 385 NGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
R P EE+ E GLS +R+ + + P SL+ IG
Sbjct: 244 LNRDPTPEEIGEKMGLSAERVREIQKISQEPVSLETPIG 282
>gi|300868700|ref|ZP_07113311.1| RNA polymerase, sigma 28 subunit [Oscillatoria sp. PCC 6506]
gi|300333261|emb|CBN58503.1| RNA polymerase, sigma 28 subunit [Oscillatoria sp. PCC 6506]
Length = 462
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 148/276 (53%), Gaps = 46/276 (16%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKL-----------EGL----------R 249
+D +R RLL +EE+ + +Q ++L EGL R
Sbjct: 103 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYIRLLELRNTAAEQEEGLIRRYVELIEAR 162
Query: 250 EVLSERCGGSPTFAQWAAAAGVDQ-RELRR----------------------RLNYGILC 286
+ L+ + G P+ +WAA AGV + EL+R + GI
Sbjct: 163 DRLAAQLGHRPSLERWAALAGVAEVSELKRIMAEGKRRWAELAGVTLEALDQMITEGIQA 222
Query: 287 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI 346
KD MI +N+RLV+S+AK YQ G+ L DL+QEG GL R EKFD ++G++FSTYA+WWI
Sbjct: 223 KDHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTRGYRFSTYAYWWI 282
Query: 347 KQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLH 406
+Q + ++++ QSRTIRLP H+ E ++K+A++++ E GR + E++A G++ ++
Sbjct: 283 RQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGRTASIEDIAAELGMTAPQVR 342
Query: 407 AVLLSPKAPRSLDQKIGINQNLKPSVCFILNLADSL 442
VLL + PRS+ + + + +L+ ADS+
Sbjct: 343 EVLL--RVPRSVSLETKVGNEKDTELGDLLDDADSV 376
>gi|134098366|ref|YP_001104027.1| RNA polymerase sigma factor SigB [Saccharopolyspora erythraea NRRL
2338]
gi|291006932|ref|ZP_06564905.1| RNA polymerase sigma factor SigB [Saccharopolyspora erythraea NRRL
2338]
gi|133910989|emb|CAM01102.1| RNA polymerase sigma factor [Saccharopolyspora erythraea NRRL 2338]
Length = 324
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/153 (45%), Positives = 105/153 (68%), Gaps = 1/153 (0%)
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 342
G+L K+ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD +KGFKFSTYA
Sbjct: 84 GVLAKNHLMEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYTKGFKFSTYA 143
Query: 343 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSM 402
WWI+QA+ + ++DQSRTIRLP H+VE ++ ++ L+ + GR +EE+A GL++
Sbjct: 144 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKIARIKRDLHQKLGREATDEELANEAGLTV 203
Query: 403 KRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
+++ +L + P SLD +G ++ P FI
Sbjct: 204 EKVADLLDHSRDPVSLDMPVGAEED-APLGDFI 235
>gi|302802267|ref|XP_002982889.1| hypothetical protein SELMODRAFT_117159 [Selaginella moellendorffii]
gi|302818650|ref|XP_002990998.1| hypothetical protein SELMODRAFT_132663 [Selaginella moellendorffii]
gi|300141329|gb|EFJ08042.1| hypothetical protein SELMODRAFT_132663 [Selaginella moellendorffii]
gi|300149479|gb|EFJ16134.1| hypothetical protein SELMODRAFT_117159 [Selaginella moellendorffii]
Length = 292
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 114/183 (62%)
Query: 240 QDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVI 299
Q+ +K+E L +SE+ G PTF +WA A ++ +ELRR+L + C+ M++SN+ LVI
Sbjct: 1 QEHIKMEALFTSMSEQLGREPTFREWAEALKIEPQELRRKLKHAKRCRTNMVSSNLGLVI 60
Query: 300 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 359
+A+ + G ++DL+QEG GL+ G EKFD S+GF+ STY WWI+ +VR++ +S
Sbjct: 61 KVARKFGLKGTTIEDLIQEGINGLLHGVEKFDTSRGFRLSTYVLWWIELSVRRASVKRSI 120
Query: 360 TIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLD 419
++P H+ + RV + R +++ E G P NEEVA G + +++H + P+SLD
Sbjct: 121 MCQVPMHLFDTHTRVLKTRARIFEERGTFPTNEEVATILGTTAQKVHLAANLMRHPKSLD 180
Query: 420 QKI 422
+
Sbjct: 181 DNV 183
>gi|312196071|ref|YP_004016132.1| RpoD subfamily RNA polymerase sigma-70 subunit [Frankia sp. EuI1c]
gi|311227407|gb|ADP80262.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EuI1c]
Length = 393
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 126/213 (59%), Gaps = 13/213 (6%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SDP+R LLTA EE+ L+ I+ GL +E+ GG + A
Sbjct: 94 SDPVRMYLKEIGKVPLLTAAEEVDLAKRIE-----AGL--FAAEKLGGG---RRLTVALR 143
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
VD + R G + K K++ +N+RLV+SIAK Y G GM DL+QEG GL+R EKF
Sbjct: 144 VDLEAVARD---GDVAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKF 200
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P
Sbjct: 201 DYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPL 260
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
EE+A+ L+ ++ +L + P SL+ IG
Sbjct: 261 PEEIAKEMDLTPDKVREILKVAQEPVSLETPIG 293
>gi|428300095|ref|YP_007138401.1| RNA polymerase, sigma subunit, RpsC/SigC [Calothrix sp. PCC 6303]
gi|428236639|gb|AFZ02429.1| RNA polymerase, sigma subunit, RpsC/SigC [Calothrix sp. PCC 6303]
Length = 442
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/237 (37%), Positives = 136/237 (57%), Gaps = 31/237 (13%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 274
RYLR R++ AN Q I L++ +E L+ G P+ +WA+ AGVD
Sbjct: 115 RYLRL-----RVVLANAAKQGDEIIAPYLRIIEAQERLASELGHRPSMERWASTAGVDVF 169
Query: 275 ELRRRL----------------------NYGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
EL++ L + G+ K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 170 ELKQILAKGKRRWAEVAKLTVEELEQMQSSGLQSKEHMIKANLRLVVSVAKKYQNRGLEL 229
Query: 313 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY 372
DLVQEG GL R EKFD +KG++FSTYA+WWI+Q + ++++ SRTIRLP H+ E
Sbjct: 230 LDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLN 289
Query: 373 RVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR--SLDQKIGINQN 427
++K+A++++ E GR P E++A ++ + VLL + PR SL+ K+G +++
Sbjct: 290 KIKKAQRKIAQEKGRTPTLEDLAVELEMTPTAVREVLL--RVPRSVSLETKVGKDKD 344
>gi|229491301|ref|ZP_04385127.1| RNA polymerase sigma factor RpoD [Rhodococcus erythropolis SK121]
gi|453070914|ref|ZP_21974141.1| RNA polymerase sigma factor SigB [Rhodococcus qingshengii BKS
20-40]
gi|226185408|dbj|BAH33512.1| RNA polymerase sigma factor SigB [Rhodococcus erythropolis PR4]
gi|229321840|gb|EEN87635.1| RNA polymerase sigma factor RpoD [Rhodococcus erythropolis SK121]
gi|452759997|gb|EME18340.1| RNA polymerase sigma factor SigB [Rhodococcus qingshengii BKS
20-40]
Length = 323
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/248 (37%), Positives = 140/248 (56%), Gaps = 18/248 (7%)
Query: 192 VKSGSTSRRKRPSVQEVDYSDP----LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEG 247
+ S ST+ R RPS ++D P +R + LLTA +E++L+ I+ G
Sbjct: 1 MTSPSTTTRIRPSAADLDAQSPAADLVRVYLNGIGRTALLTAADEVELAKRIE-----AG 55
Query: 248 LREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQG 307
L G T A+ +R+L + G + ++ +N+RLV+S+AK Y G
Sbjct: 56 LYASHVLATGKRLTVAK--------KRDLATIVREGQSARSHLLEANLRLVVSLAKRYTG 107
Query: 308 AGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHM 367
GM L DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+
Sbjct: 108 RGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHL 167
Query: 368 VEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
VE ++ +++L+ + GR ++E+AE +G+ ++ +L + P SLD +G N
Sbjct: 168 VEQVNKLARIKRELHQQLGREATDDELAEESGIPAHKIADLLDHSRDPVSLDMPVG-NDE 226
Query: 428 LKPSVCFI 435
P FI
Sbjct: 227 EAPLGDFI 234
>gi|354568141|ref|ZP_08987307.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353541106|gb|EHC10576.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 416
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 139/237 (58%), Gaps = 31/237 (13%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 274
RYLR R++ +N Q + L++ ++E L+ G P+ +WA+AAGV+
Sbjct: 89 RYLRM-----RIVLSNAAKQGDEILIPYLRVIEVQERLASELGHRPSIERWASAAGVEVL 143
Query: 275 ELRRRLNYG----------------------ILCKDKMITSNIRLVISIAKNYQGAGMNL 312
EL++ L G + K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 144 ELKQILGQGKRRWAEIAKLTVEELEKIQSDGLQSKEHMIKANLRLVVSVAKKYQNRGLEL 203
Query: 313 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY 372
DLVQEG GL R EKFD +KG++FSTYA+WWI+Q + ++++ SRTIRLP H+ E
Sbjct: 204 LDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLN 263
Query: 373 RVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR--SLDQKIGINQN 427
++K+A++++ E GR P E++A+ ++ ++ VLL + PR SL+ K+G +++
Sbjct: 264 KIKKAQRKIAQEKGRTPTLEDLAQELEMTPTQVREVLL--RVPRSVSLETKVGKDKD 318
>gi|406920079|gb|EKD58207.1| hypothetical protein ACD_57C00003G0002 [uncultured bacterium]
Length = 448
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 144/262 (54%), Gaps = 21/262 (8%)
Query: 185 AAANVMSVKSGSTSRRKRPSVQEVDYS----------DPLR-YLRATTSSSRLLTANEEM 233
A+ +V V+S + + ++E+D S DP+R YLR LLTA +E+
Sbjct: 94 ASIDVFDVESEKDAAKLTQQIEEIDLSKISLDKTVSSDPVRMYLREIGKVD-LLTAKQEI 152
Query: 234 QLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDK---- 289
+L A + K + L++ G PT + A G+D++ ++ DK
Sbjct: 153 EL-AQCAEAFKFRRTDKRLAKELGRKPTLPEIAVEMGLDKKVIKAVEKTSKDWNDKQGEA 211
Query: 290 ----MITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
+I +N+RLV+SIAK Y G G+ DL+QEG GL+R EKFD +GFKFSTYA WW
Sbjct: 212 AERMLIQANLRLVVSIAKKYMGRGLTFLDLIQEGNIGLMRAVEKFDWRRGFKFSTYATWW 271
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++L+DQSRTIR+P HMVE + K ++L + R P EEV++ G+ +++
Sbjct: 272 IRQAITRALADQSRTIRIPVHMVETINKYKRIERELEQKYERPPTAEEVSKEMGIEIEKA 331
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
+L + SL+ +G ++
Sbjct: 332 QEILKISQDTTSLETPVGKEED 353
>gi|357588815|ref|ZP_09127481.1| RNA polymerase sigma factor SigB [Corynebacterium nuruki S6-4]
Length = 421
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 128/210 (60%), Gaps = 14/210 (6%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA +E++LS I+ L E L + G T A+ +R+L+ + G
Sbjct: 137 LLTAADEVELSQRIEAGLYAEHLLD-----SGEKLTRAR--------KRDLKVLVREGRA 183
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
+ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 184 ARTHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGYKFSTYATWW 243
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ + ++DQSRTIRLP H+VE ++ ++++Y + GR NEE+A+ +G+ ++
Sbjct: 244 IRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQQLGREATNEELADESGIDESKI 303
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
+L + P SLD +G ++ P FI
Sbjct: 304 EMLLKQSRDPVSLDMPVGSDEE-APLGDFI 332
>gi|384247274|gb|EIE20761.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coccomyxa subellipsoidea C-169]
Length = 329
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 80/199 (40%), Positives = 119/199 (59%), Gaps = 1/199 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ-RELRRRLNYGI 284
LLTA EE LS +Q L+ +E + ++R G T +WAA G R+ + G
Sbjct: 9 LLTAAEEKVLSKAVQRLIAMEAKQTEATQRLGRPITEREWAAECGQSSIHAFRKAVKVGQ 68
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
+ +M+ SN RLV +A+ Y G++ QDL+ EG GL RG EKFDA +GFKFSTYAHW
Sbjct: 69 EARTRMMKSNERLVFHVARRYMNRGLDFQDLLAEGMSGLWRGVEKFDADRGFKFSTYAHW 128
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
W++QA+ +++S+Q R +RLP H+ E +V + + SE+GR NE++AE G+S ++
Sbjct: 129 WVRQAITRAISEQGRVVRLPVHLHELMAKVTKVDLEYQSEHGRRAGNEKLAELVGISQEK 188
Query: 405 LHAVLLSPKAPRSLDQKIG 423
L + AP S + +G
Sbjct: 189 LAMLSKVYMAPTSFNAPVG 207
>gi|355576273|ref|ZP_09045605.1| hypothetical protein HMPREF1008_01582 [Olsenella sp. oral taxon 809
str. F0356]
gi|354816925|gb|EHF01437.1| hypothetical protein HMPREF1008_01582 [Olsenella sp. oral taxon 809
str. F0356]
Length = 461
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 87/223 (39%), Positives = 122/223 (54%), Gaps = 29/223 (13%)
Query: 211 SDPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWA 266
DP+R LLTA+EE M++ AG + KLE A
Sbjct: 157 GDPVRMYLKEIGKVDLLTASEEVNLAMKIEAGTEASQKLE-------------------A 197
Query: 267 AAAG------VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGC 320
A G + R L R G+ K +I++N+RL +SIAK Y G GM DL+QEG
Sbjct: 198 ADNGEIELTRAEMRRLMRIEQVGLEAKQALISANLRLTVSIAKRYVGRGMLFLDLIQEGN 257
Query: 321 RGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQ 380
GL+R EKFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++Q
Sbjct: 258 LGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQ 317
Query: 381 LYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
L + GR P EE+ E G++ R+ + + P SL+ IG
Sbjct: 318 LLQDLGRDPTPEEIGEEMGITADRVREIQKISQEPVSLETPIG 360
>gi|46241495|gb|AAS82950.1| chloroplast RPOD [Chlamydomonas reinhardtii]
Length = 311
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 123/193 (63%), Gaps = 1/193 (0%)
Query: 240 QDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVI 299
+D L LE ++ + T + AAA +D L+ R + G+ K+ ++ SN +LV+
Sbjct: 3 RDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKAKELLLKSNYKLVM 62
Query: 300 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 359
++ K++ G G ++QDLV EG +GL++G EK+DA+KGF+F TYAHWWI+QAV +SL++ R
Sbjct: 63 TVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWIRQAVSRSLAETGR 122
Query: 360 TIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLD 419
+RLP HM+E R+K +L ++ R P E+A+A GL + R+ ++ + ++ SLD
Sbjct: 123 AVRLPMHMIEQLTRLKNLSAKLQTQLAREPTLPELAKAAGLPVTRVQMLMETARSAASLD 182
Query: 420 QKIGINQNLKPSV 432
IG N+ L P+V
Sbjct: 183 TPIGGNE-LGPTV 194
>gi|291526136|emb|CBK91723.1| RNA polymerase, sigma 70 subunit, RpoD [Eubacterium rectale DSM
17629]
gi|291527130|emb|CBK92716.1| RNA polymerase, sigma 70 subunit, RpoD [Eubacterium rectale M104/1]
Length = 418
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 126/216 (58%), Gaps = 2/216 (0%)
Query: 208 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
V DP+R LL+A+EE++L+ ++D VL R G+ +
Sbjct: 105 VSVEDPVRMYLKEIGKVPLLSADEEIELAQNMEDGAVATEKINVLKGRIDGASEEEKAEI 164
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
+ L+R ++ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++
Sbjct: 165 KEE--IKTLQRDVDKGADAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAV 222
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
EKFD KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR
Sbjct: 223 EKFDYKKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGR 282
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
P+ EE+A+ + ++R+ +L + P SL+ IG
Sbjct: 283 EPSPEEIAKEMNMPVERVREILKISQEPVSLETPIG 318
>gi|227488742|ref|ZP_03919058.1| RNA polymerase sigma factor SigB [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227542262|ref|ZP_03972311.1| RNA polymerase sigma factor SigB [Corynebacterium glucuronolyticum
ATCC 51866]
gi|227091164|gb|EEI26476.1| RNA polymerase sigma factor SigB [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227182091|gb|EEI63063.1| RNA polymerase sigma factor SigB [Corynebacterium glucuronolyticum
ATCC 51866]
Length = 327
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 87/239 (36%), Positives = 138/239 (57%), Gaps = 17/239 (7%)
Query: 199 RRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGL--REVLSERC 256
R +R + +D +R + LL+A EE++L+ ++ GL R +L++
Sbjct: 15 RNRRHQTNDNPAADLVRVYLNGIGKTPLLSAEEEVELAKTVE-----VGLYARHLLND-- 67
Query: 257 GGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLV 316
P + A +R+L+ G ++ M+ +N+RLV+S+AK Y G GM L DL+
Sbjct: 68 ---PEYKPTRAM----KRDLKELAREGDKARNHMLEANLRLVVSLAKRYSGRGMPLLDLI 120
Query: 317 QEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKE 376
QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++
Sbjct: 121 QEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSR 180
Query: 377 ARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
++++Y + GR NEE+AE +G+ ++ + + P SLD +G ++ P FI
Sbjct: 181 IKREMYQQFGREVTNEELAEESGIDENKIEMLFRQSRDPVSLDMPVGADEE-APLGDFI 238
>gi|414079485|ref|YP_007000909.1| RpoD family RNA polymerase sigma factor SigE [Anabaena sp. 90]
gi|413972764|gb|AFW96852.1| RpoD family RNA polymerase sigma factor SigE [Anabaena sp. 90]
Length = 389
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 130/198 (65%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL +EE++L+ ++ L +++ L+ L + G P+ Q A+ + +++L RL G +
Sbjct: 91 LLKPDEEVELARRVRFLEEVKELQAALELQLGAQPSKVQVASQLEITEKQLESRLYQGRV 150
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R +EKFD KG+KFSTYA+WW
Sbjct: 151 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRASEKFDPDKGYKFSTYAYWW 210
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +++++ +RTIRLP H+VE ++K+A+++L + R+P E+AEA +++ +L
Sbjct: 211 IRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLARNPTEAEMAEALEITVHQL 270
Query: 406 HAVLLSPKAPRSLDQKIG 423
+ + SL+ ++G
Sbjct: 271 RQLQQLRRQALSLNHRVG 288
>gi|242078297|ref|XP_002443917.1| hypothetical protein SORBIDRAFT_07g004340 [Sorghum bicolor]
gi|241940267|gb|EES13412.1| hypothetical protein SORBIDRAFT_07g004340 [Sorghum bicolor]
Length = 500
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 84/206 (40%), Positives = 123/206 (59%), Gaps = 2/206 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR T S LLT + +QLS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 188 YLRGTVSKD-LLTHKQVIQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQSLHISPPE 246
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 335
LR R+ L ++ + SNIRLVISIA+ Y G+ L DL+Q G GL+RG EKFDAS+G
Sbjct: 247 LRARMRESFLAREMLTMSNIRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRG 306
Query: 336 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVA 395
F+ STY +WWI+Q V ++L+D S+ RLP ++ E ++ A+ L + G P E +A
Sbjct: 307 FRISTYVYWWIRQGVSRALADNSKAFRLPTYLHERLIAIRGAKYAL-EDQGIAPTVENIA 365
Query: 396 EATGLSMKRLHAVLLSPKAPRSLDQK 421
E+ +S K++H + SLDQ+
Sbjct: 366 ESLNISEKKVHNATEAVNKVLSLDQQ 391
>gi|2624403|emb|CAA74653.1| plastid RNA polymerase sigma factor [Sorghum bicolor]
Length = 500
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 84/206 (40%), Positives = 123/206 (59%), Gaps = 2/206 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR T S LLT + +QLS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 188 YLRGTVSKD-LLTHKQVIQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQSLHISPPE 246
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 335
LR R+ L ++ + SNIRLVISIA+ Y G+ L DL+Q G GL+RG EKFDAS+G
Sbjct: 247 LRARMRESFLAREMLTMSNIRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRG 306
Query: 336 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVA 395
F+ STY +WWI+Q V ++L+D S+ RLP ++ E ++ A+ L + G P E +A
Sbjct: 307 FRISTYVYWWIRQGVSRALADNSKAFRLPTYLHERLIAIRGAKYAL-EDQGIAPTVENIA 365
Query: 396 EATGLSMKRLHAVLLSPKAPRSLDQK 421
E+ +S K++H + SLDQ+
Sbjct: 366 ESLNISEKKVHNATEAVNKVLSLDQQ 391
>gi|186680839|ref|YP_001864035.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186463291|gb|ACC79092.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 378
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 131/198 (66%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A+EE++L+ ++ L ++ L+ L+ + G PT + A+ + +++L RL G +
Sbjct: 80 LLKADEEVELARRVRFLEEIRELQAALNLKLGQEPTKLEIASELEMTEKQLESRLYQGRV 139
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R EKFD KG+KFSTYA+WW
Sbjct: 140 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 199
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +++++ +RTIRLP H+VE ++K+A+++L + R+P E+AEA +S+++L
Sbjct: 200 IRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLCRNPTEGEMAEALDISVQQL 259
Query: 406 HAVLLSPKAPRSLDQKIG 423
+ + SL+ ++G
Sbjct: 260 RQLQQLRRQALSLNHRVG 277
>gi|427709274|ref|YP_007051651.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427361779|gb|AFY44501.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 377
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 130/198 (65%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A+EE++L+ ++ L ++ ++ L E+ G PT Q AA + +++L RL G +
Sbjct: 79 LLKADEEVELARRVRFLEEVREIQAALQEQLGQQPTKVQVAAQLDLTEKQLESRLYQGRV 138
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R EKFD KG+KFSTYA+WW
Sbjct: 139 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 198
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +++++ +RTIRLP H+VE ++K+A+++L + G +P+ E+A +++++L
Sbjct: 199 IRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLGHNPSEAEMAAFLEMTVQQL 258
Query: 406 HAVLLSPKAPRSLDQKIG 423
+ + SL+ ++G
Sbjct: 259 RQLQQLRRQALSLNHRVG 276
>gi|282897491|ref|ZP_06305492.1| sigC (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281197586|gb|EFA72481.1| sigC (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 429
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 86/227 (37%), Positives = 132/227 (58%), Gaps = 26/227 (11%)
Query: 225 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLN--- 281
RLL AN Q A I L+L ++E L G P+ +WA+ AG+ +L+ L+
Sbjct: 107 RLLLANAAKQGDALIVLYLQLIEVQERLVSELGHRPSLERWASTAGIKLMDLKPTLSEGK 166
Query: 282 -------------------YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 322
GI K+ MI +N+RLV+S+AK YQ G+ L DLVQEG G
Sbjct: 167 RRWGEIAQLTVEELDEIQSQGIQAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLG 226
Query: 323 LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLY 382
L R EKFD +KG++FSTYA+WWI+Q + ++++ SRTIRLP H+ E ++K+A++++
Sbjct: 227 LERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIA 286
Query: 383 SENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR--SLDQKIGINQN 427
E GR P E++A ++ ++ VLL + PR SL+ K+G +++
Sbjct: 287 QEKGRTPTLEDLALELDMTPNQVREVLL--RVPRSVSLETKVGKDKD 331
>gi|443313785|ref|ZP_21043395.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442776198|gb|ELR86481.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 440
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 112/166 (67%), Gaps = 4/166 (2%)
Query: 264 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 323
+WA AG+ +L + G+ K+ MI +N+RLV+S+AK YQ G+ L DLVQEG GL
Sbjct: 179 RWAEIAGLTVEQLEQIQTQGVRAKEHMIQANLRLVVSVAKKYQNRGLELLDLVQEGTLGL 238
Query: 324 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYS 383
R EKFD +KG++FSTYA+WWI+Q + ++++ QSRTIRLP H+ E ++K+ ++++
Sbjct: 239 ERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKVQRKIAQ 298
Query: 384 ENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR--SLDQKIGINQN 427
E GR P EE+A ++ K+L VLL + PR SL+ K+G +++
Sbjct: 299 EKGRTPTIEEIAAELEITPKQLRDVLL--RVPRSVSLETKVGKDKD 342
>gi|238924709|ref|YP_002938225.1| RNA polymerase sigma factor RpoD [Eubacterium rectale ATCC 33656]
gi|238876384|gb|ACR76091.1| RNA polymerase sigma factor RpoD [Eubacterium rectale ATCC 33656]
Length = 434
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 126/216 (58%), Gaps = 2/216 (0%)
Query: 208 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
V DP+R LL+A+EE++L+ ++D VL R G+ +
Sbjct: 121 VSVEDPVRMYLKEIGKVPLLSADEEIELAQNMEDGAVATEKINVLKGRIDGASEEEKAEI 180
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
+ L+R ++ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++
Sbjct: 181 KEE--IKTLQRDVDKGADAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAV 238
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
EKFD KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR
Sbjct: 239 EKFDYKKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGR 298
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
P+ EE+A+ + ++R+ +L + P SL+ IG
Sbjct: 299 EPSPEEIAKEMNMPVERVREILKISQEPVSLETPIG 334
>gi|288916958|ref|ZP_06411330.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
gi|288351667|gb|EFC85872.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
Length = 392
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 123/217 (56%), Gaps = 20/217 (9%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SDP+R LLTA EE+ L+ I+ G + A A
Sbjct: 92 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE----------------AGLFASEKLAVATK 135
Query: 271 VDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 326
++RR L G + K K++ +N+RLV+SIAK Y G GM DL+QEG GL+R
Sbjct: 136 KTSPQMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRA 195
Query: 327 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG 386
EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + G
Sbjct: 196 VEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLG 255
Query: 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
R P+ EE+A+ L+ ++ +L + P SL+ IG
Sbjct: 256 REPSPEEIAKEMDLTPDKVREILKVSQEPVSLETPIG 292
>gi|298492420|ref|YP_003722597.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298234338|gb|ADI65474.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 389
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 131/198 (66%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL +EE++L+ ++ L +++ L+ L E G P+ ++ AA + +++L RL G +
Sbjct: 91 LLKPDEEVELARRVRFLEEVKDLQAALEEELGQQPSRSEVAAKFEMTEKQLESRLYQGRV 150
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R EKFD KG+KFSTYA+WW
Sbjct: 151 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 210
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +++++ +RTIRLP H+VE ++K+A+++L + R+P+ E+A A +S+++L
Sbjct: 211 IRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLARNPSEAEMATALEISIQQL 270
Query: 406 HAVLLSPKAPRSLDQKIG 423
+ + SL+ ++G
Sbjct: 271 RQLQQLRRQALSLNHRVG 288
>gi|1769588|gb|AAB95226.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 328
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 83/202 (41%), Positives = 124/202 (61%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q L+ L+ R+ L E T +WA AA + ++L+R L G
Sbjct: 32 LLTHEEEIVYGKQVQRLMALQEKRQTLEESLDRERTREEWAEAAQLTPKQLQRDLQIGER 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV++IA+N + + DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIARNIKKRNLEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q RTIRLP H+ E ++K+ ++QL + GR E+AEA L ++
Sbjct: 152 IRQAITRAIAQQGRTIRLPIHITEKLNKIKKTQRQLAQDLGRAATIAEIAEALELEPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
+ P SLD ++G NQ+
Sbjct: 212 REYFRVSRHPISLDVRVGDNQD 233
>gi|3077738|dbj|BAA25787.1| SigB [Cyanidium caldarium]
Length = 424
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 86/222 (38%), Positives = 122/222 (54%), Gaps = 30/222 (13%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
Y+R RL T E LS QD L RE L + G PT +W+ GV + E
Sbjct: 74 YVREICRLDRL-TDEEVASLSMATQDYCALMKQREELCAKLGREPTDTEWSTTVGVSEEE 132
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQ-------------GAGMN----------- 311
+R+R+ G +++++ SN+RLV++IA Y+ GM+
Sbjct: 133 VRKRIERGRRARERLVASNLRLVLAIANRYKLRAVVCSAWKSRSKGGMDMPSHEKVRLQR 192
Query: 312 -----LQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFH 366
L DL+QEG GL+R AEKFD SKGFKFSTYA WWI+QA+++ +S+ SRTIRLP H
Sbjct: 193 QHNIFLGDLIQEGALGLIRAAEKFDPSKGFKFSTYATWWIRQAIQRCVSEHSRTIRLPNH 252
Query: 367 MVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAV 408
+ E+ ++ R +L R P +EEVAEA +++KRL +
Sbjct: 253 VTESLRQIYRMRARLQHVLKRPPTDEEVAEACNMTLKRLKKI 294
>gi|225021249|ref|ZP_03710441.1| hypothetical protein CORMATOL_01261 [Corynebacterium matruchotii
ATCC 33806]
gi|224945982|gb|EEG27191.1| hypothetical protein CORMATOL_01261 [Corynebacterium matruchotii
ATCC 33806]
Length = 391
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 108/163 (66%), Gaps = 1/163 (0%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L+ + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 141 KRDLKVLVKEGRKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 200
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ ++++Y + GR NE
Sbjct: 201 AKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQQLGREATNE 260
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
E+AE +G+ ++ +L + P SLD +G ++ P FI
Sbjct: 261 ELAEESGIDESKIELLLRQSRDPVSLDMPVGADEE-APLGDFI 302
>gi|291451171|ref|ZP_06590561.1| RNA polymerase sigma factor [Streptomyces albus J1074]
gi|291354120|gb|EFE81022.1| RNA polymerase sigma factor [Streptomyces albus J1074]
Length = 397
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 78/162 (48%), Positives = 106/162 (65%), Gaps = 1/162 (0%)
Query: 262 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCR 321
A A AG+ R+LRR + G K ++I +N+RLV+S+AK Y G G+ + DLVQEG
Sbjct: 137 LAGGCADAGL-ARDLRRLVVLGERAKGRLIEANLRLVVSVAKRYTGRGLTMLDLVQEGNL 195
Query: 322 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL 381
GL+R EKFD ++GFKFSTYA WWI+QA+ ++L+DQ+RTIR+P H+VE RV ++ L
Sbjct: 196 GLIRAVEKFDYTRGFKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRTQRAL 255
Query: 382 YSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
E GR P EEV E GLS +++ VL P SL +G
Sbjct: 256 LQEAGREPAAEEVGERLGLSAEKVEEVLRLAHEPISLHAPVG 297
>gi|326523529|dbj|BAJ92935.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 506
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 84/206 (40%), Positives = 122/206 (59%), Gaps = 2/206 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR T S LLT + + LS I+D + L+ R L+E G P++ Q A + + E
Sbjct: 194 YLRGTVSKE-LLTHKQVVHLSKKIKDGIWLQQQRSKLTEILGNEPSYKQMAQSLRISTPE 252
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 335
LR R+ L ++ + SNIRLVISIA+ Y G+ L DL+Q G GL+RG EKFDAS+G
Sbjct: 253 LRSRMRESFLAREVLTMSNIRLVISIAQKYDKLGVELSDLIQGGLIGLLRGIEKFDASRG 312
Query: 336 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVA 395
F+ STY +WWI+Q V ++L+D S+T RLP +M E ++ A+ L + G P + +A
Sbjct: 313 FRISTYVYWWIRQGVSRALADNSKTFRLPTYMHERLIAIRAAKYAL-EDQGVSPTTQNIA 371
Query: 396 EATGLSMKRLHAVLLSPKAPRSLDQK 421
E +S K++H + SLDQ+
Sbjct: 372 ELLNISEKKVHNATEAVNKALSLDQQ 397
>gi|305681000|ref|ZP_07403807.1| RNA polymerase sigma factor SigB [Corynebacterium matruchotii ATCC
14266]
gi|305659205|gb|EFM48705.1| RNA polymerase sigma factor SigB [Corynebacterium matruchotii ATCC
14266]
Length = 365
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 108/163 (66%), Gaps = 1/163 (0%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L+ + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 115 KRDLKVLVKEGRKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 174
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ ++++Y + GR NE
Sbjct: 175 AKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQQLGREATNE 234
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
E+AE +G+ ++ +L + P SLD +G ++ P FI
Sbjct: 235 ELAEESGIDESKIELLLRQSRDPVSLDMPVGADEE-APLGDFI 276
>gi|392944009|ref|ZP_10309651.1| RNA polymerase sigma factor, sigma-70 family [Frankia sp. QA3]
gi|392287303|gb|EIV93327.1| RNA polymerase sigma factor, sigma-70 family [Frankia sp. QA3]
Length = 392
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 123/217 (56%), Gaps = 20/217 (9%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SDP+R LLTA EE+ L+ I+ G + A A
Sbjct: 92 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE----------------AGLFASEKLAVATK 135
Query: 271 VDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 326
++RR L G + K K++ +N+RLV+SIAK Y G GM DL+QEG GL+R
Sbjct: 136 KTSPQMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRA 195
Query: 327 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG 386
EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + G
Sbjct: 196 VEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLG 255
Query: 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
R P+ EE+A+ L+ ++ +L + P SL+ IG
Sbjct: 256 REPSPEEIAKEMDLTPDKVREILKVSQEPVSLETPIG 292
>gi|19553123|ref|NP_601125.1| RNA polymerase sigma factor SigB [Corynebacterium glutamicum ATCC
13032]
gi|62390759|ref|YP_226161.1| RNA polymerase sigma factor SigB [Corynebacterium glutamicum ATCC
13032]
gi|1149591|emb|CAA89988.1| SigB sigma factor [Corynebacterium glutamicum]
gi|21324689|dbj|BAB99312.1| DNA-directed RNA polymerase sigma subunits (sigma70/sigma32) (SigB)
[Corynebacterium glutamicum ATCC 13032]
gi|41326097|emb|CAF20260.1| RNA POLYMERASE SIGMA FACTOR [Corynebacterium glutamicum ATCC 13032]
gi|385144025|emb|CCH25064.1| RNA polymerase sigma factor [Corynebacterium glutamicum K051]
Length = 331
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 106/163 (65%), Gaps = 1/163 (0%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L+ G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 81 KRDLKVLAKDGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 140
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
SKGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++LY GR NE
Sbjct: 141 SKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKRELYQHLGREATNE 200
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
E+AE +G+ ++ +L + P SLD +G ++ P FI
Sbjct: 201 ELAEESGIEESKIEMLLRQSRDPVSLDMPVGADEE-APLGDFI 242
>gi|300858635|ref|YP_003783618.1| RNA polymerase sigma factor B [Corynebacterium pseudotuberculosis
FRC41]
gi|375288814|ref|YP_005123355.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 3/99-5]
gi|379715514|ref|YP_005303851.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 316]
gi|383314397|ref|YP_005375252.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis P54B96]
gi|384504818|ref|YP_005681488.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 1002]
gi|384506912|ref|YP_005683581.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis C231]
gi|384508999|ref|YP_005685667.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis I19]
gi|384511091|ref|YP_005690669.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis PAT10]
gi|385807697|ref|YP_005844094.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 267]
gi|386740547|ref|YP_006213727.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 31]
gi|387136741|ref|YP_005692721.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 42/02-A]
gi|387138813|ref|YP_005694792.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis CIP 52.97]
gi|387140805|ref|YP_005696783.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 1/06-A]
gi|389850565|ref|YP_006352800.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 258]
gi|300686089|gb|ADK29011.1| RNA polymerase sigma factor B [Corynebacterium pseudotuberculosis
FRC41]
gi|302206344|gb|ADL10686.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis C231]
gi|302330901|gb|ADL21095.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 1002]
gi|308276586|gb|ADO26485.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis I19]
gi|341825030|gb|AEK92551.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis PAT10]
gi|348607186|gb|AEP70459.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 42/02-A]
gi|349735291|gb|AEQ06769.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis CIP 52.97]
gi|355392596|gb|AER69261.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 1/06-A]
gi|371576103|gb|AEX39706.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 3/99-5]
gi|377654220|gb|AFB72569.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 316]
gi|380869898|gb|AFF22372.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis P54B96]
gi|383805090|gb|AFH52169.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 267]
gi|384477241|gb|AFH91037.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 31]
gi|388247871|gb|AFK16862.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 258]
Length = 329
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 107/163 (65%), Gaps = 1/163 (0%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L+ + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 79 KRDLKVLVKDGRKARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 138
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
SKGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ ++++Y GR NE
Sbjct: 139 SKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQHLGREATNE 198
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
E+AE +G+ ++ +L + P SLD +G ++ P FI
Sbjct: 199 ELAEESGIDESKIEILLRQSRDPVSLDMPVGADEE-APLGDFI 240
>gi|37523928|ref|NP_927305.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
gi|35214934|dbj|BAC92300.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
Length = 344
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 88/223 (39%), Positives = 127/223 (56%), Gaps = 3/223 (1%)
Query: 203 PSVQEVDYSDPL--RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSP 260
PS E SD L YL R+ T EE+ L+ IQ L ++G RE L+ R G
Sbjct: 22 PSRSEAQGSDDLVDLYLNEIGRIPRV-TPEEEIHLARRIQAKLAIDGAREELAMRLGRPS 80
Query: 261 TFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGC 320
AA G D + L G+ + K+I +N+RLV+SIAK Y G + DL+QEG
Sbjct: 81 PEEDVAAFMGRDPKALIEATRQGLWAQRKLINANLRLVVSIAKKYIGRNVPFLDLIQEGN 140
Query: 321 RGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQ 380
GL+R EKFD KG++FSTYA WWI+Q++ +++++Q+RTIRLP HMVE +V+ +
Sbjct: 141 IGLMRATEKFDPEKGYRFSTYATWWIRQSITRAIANQARTIRLPIHMVEKVRKVRREMRM 200
Query: 381 LYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
E GR P+ +E+A + +K+L + + P SLD +G
Sbjct: 201 ATLELGRRPSEDELASRLAIKVKKLRTIQEVSRQPVSLDMPVG 243
>gi|365842430|ref|ZP_09383441.1| RNA polymerase sigma factor RpoD [Flavonifractor plautii ATCC
29863]
gi|364575646|gb|EHM53025.1| RNA polymerase sigma factor RpoD [Flavonifractor plautii ATCC
29863]
Length = 453
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 122/215 (56%), Gaps = 8/215 (3%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLS--AGIQDLLKLEGLREVLSERCGGSPTFAQWAAA 268
DP+R LLT +EE+QL+ G D K E + E+ R G
Sbjct: 145 DDPVRMYLKEIGKVNLLTPDEEIQLAQDMGAGDAAK-EQMEELEQARKNGEEVSLTEEEE 203
Query: 269 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 328
ELRR + G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ E
Sbjct: 204 K-----ELRRLVKRGEAAKQRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVE 258
Query: 329 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH 388
KFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE +V +QL E G
Sbjct: 259 KFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKVIRVSRQLLQELGHD 318
Query: 389 PNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
P+ EE+AE + + ++ +L + P SL+ IG
Sbjct: 319 PSPEEIAEEMSMPVDKVREILKIAQEPVSLETPIG 353
>gi|86739990|ref|YP_480390.1| sigma 38 [Frankia sp. CcI3]
gi|86566852|gb|ABD10661.1| RNA polymerase, sigma 70 subunit, RpoD [Frankia sp. CcI3]
Length = 409
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 84/221 (38%), Positives = 125/221 (56%), Gaps = 20/221 (9%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SDP+R LLTA EE+ L+ I+ G + A A
Sbjct: 109 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE----------------AGLFASEKLAVATK 152
Query: 271 VDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 326
++RR L G + K K++ +N+RLV+SIAK Y G GM DL+QEG GL+R
Sbjct: 153 KTSPQMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRA 212
Query: 327 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG 386
EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + G
Sbjct: 213 VEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLG 272
Query: 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
R P+ EE+A+ L+ ++ +L + P SL+ IG ++
Sbjct: 273 REPSPEEIAKEMDLTPDKVREILKVSQEPVSLETPIGEEED 313
>gi|298490007|ref|YP_003720184.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298231925|gb|ADI63061.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 417
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 135/237 (56%), Gaps = 31/237 (13%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 274
RYLR R++ AN Q I +L ++E LS G P+ +WA AG+D
Sbjct: 90 RYLRL-----RIVLANAAKQGDTVIVPYQRLIEVQERLSSELGHRPSLERWAKTAGIDLA 144
Query: 275 ELRRRL----------------------NYGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
+L+ L + G+ K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 145 DLKPTLLEGKRRWAEIAKLKVEELENVQSQGLQAKEHMIKANLRLVVSVAKKYQNRGLEL 204
Query: 313 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY 372
DLVQEG GL R EKFD +KG++FSTYA+WWI+Q + ++++ SRTIRLP H+ E
Sbjct: 205 LDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLN 264
Query: 373 RVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR--SLDQKIGINQN 427
++K+A++++ E GR P E++A ++ ++ VLL + PR SL+ K+G +++
Sbjct: 265 KIKKAQRKISQEKGRTPTLEDLAIELDMTPTQVREVLL--RVPRSVSLETKVGKDKD 319
>gi|427728873|ref|YP_007075110.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427364792|gb|AFY47513.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 309
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 124/202 (61%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT+++E+ +Q ++ +E ++ LS++ PT A+ A + E+ + L G
Sbjct: 14 LLTSDQEITYGRQVQQMIAIEEHKQQLSQQLHREPTLAELADFVNKSETEVNQILQQGQR 73
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMIT+N+RLV+S+AK YQ + DLVQEG GL RG EKFD ++G+K STYA+WW
Sbjct: 74 AKQKMITANLRLVVSVAKKYQHRNLEFLDLVQEGAIGLQRGIEKFDPNRGYKLSTYAYWW 133
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I QA+ ++++++SRT+RLP H+ E ++K+A+++L+ R E+A+ L ++
Sbjct: 134 ISQAITRAIAEKSRTVRLPVHVNEKLNQIKKAQRELFQTLNRRATVTEIAQKLNLEPSQI 193
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L SLD K+G NQ+
Sbjct: 194 REYLSVASGTISLDLKVGDNQD 215
>gi|373118497|ref|ZP_09532625.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium
7_1_58FAA]
gi|371666996|gb|EHO32129.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium
7_1_58FAA]
Length = 448
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 122/215 (56%), Gaps = 8/215 (3%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLS--AGIQDLLKLEGLREVLSERCGGSPTFAQWAAA 268
DP+R LLT +EE+QL+ G D K E + E+ R G
Sbjct: 140 DDPVRMYLKEIGKVNLLTPDEEVQLAQDMGAGDAAK-EQMEELEQARKNGEEVSITEEEE 198
Query: 269 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 328
ELRR + G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ E
Sbjct: 199 K-----ELRRLVKRGEAAKQRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVE 253
Query: 329 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH 388
KFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE +V +QL E G
Sbjct: 254 KFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKVIRVSRQLLQELGHD 313
Query: 389 PNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
P+ EE+AE + + ++ +L + P SL+ IG
Sbjct: 314 PSPEEIAEEMSMPVDKVREILKIAQEPVSLETPIG 348
>gi|384515845|ref|YP_005710937.1| RNA polymerase sigma factor B [Corynebacterium ulcerans 809]
gi|397654192|ref|YP_006494875.1| RNA polymerase sigma factor [Corynebacterium ulcerans 0102]
gi|334697046|gb|AEG81843.1| RNA polymerase sigma factor B [Corynebacterium ulcerans 809]
gi|393403148|dbj|BAM27640.1| RNA polymerase sigma factor [Corynebacterium ulcerans 0102]
Length = 329
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 107/163 (65%), Gaps = 1/163 (0%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L+ + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 79 KRDLKVLVKDGRKARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 138
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
SKGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ ++++Y GR NE
Sbjct: 139 SKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQHLGREATNE 198
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
E+AE +G+ ++ +L + P SLD +G ++ P FI
Sbjct: 199 ELAEESGIDESKIELLLRQSRDPVSLDMPVGADEE-APLGDFI 240
>gi|324999213|ref|ZP_08120325.1| RNA polymerase sigma factor SigB [Pseudonocardia sp. P1]
Length = 380
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 121/207 (58%), Gaps = 25/207 (12%)
Query: 226 LLTANEEMQLSAGIQ---------DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQREL 276
LLTA EE+ L+ I+ D EG E L P + +R+L
Sbjct: 90 LLTAAEEVDLAKRIEAGIFAQHRLDTATAEGTLESLD------PQY----------RRDL 133
Query: 277 RRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF 336
R + G L K+ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD +KGF
Sbjct: 134 RAVVRDGALAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYTKGF 193
Query: 337 KFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAE 396
KFSTYA WWI+QA+ + ++DQ+RTIRLP H+VE ++ ++ ++ GR P+ E+A+
Sbjct: 194 KFSTYATWWIRQAITRGMADQARTIRLPVHLVEQVNKLARIKRDMHQRQGREPSEAELAQ 253
Query: 397 ATGLSMKRLHAVLLSPKAPRSLDQKIG 423
+G+ ++ +L + P SLD +G
Sbjct: 254 ESGIPEHKISDLLDHARDPVSLDMPVG 280
>gi|227549119|ref|ZP_03979168.1| RNA polymerase sigma factor SigB [Corynebacterium lipophiloflavum
DSM 44291]
gi|227078816|gb|EEI16779.1| RNA polymerase sigma factor SigB [Corynebacterium lipophiloflavum
DSM 44291]
Length = 331
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 107/163 (65%), Gaps = 1/163 (0%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L+ G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 81 KRDLKILAKQGRRARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 140
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ R+++Y GR P NE
Sbjct: 141 AKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIRREMYQSLGREPTNE 200
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
E+++ +G+ ++ +L + P SLD +G ++ P FI
Sbjct: 201 ELSDESGIEESKIEMLLRQSRDPVSLDMPVGADEE-APLGDFI 242
>gi|158313963|ref|YP_001506471.1| RpoD family RNA polymerase sigma factor [Frankia sp. EAN1pec]
gi|158109368|gb|ABW11565.1| RNA polymerase, sigma 70 subunit, RpoD family [Frankia sp. EAN1pec]
Length = 409
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 123/217 (56%), Gaps = 20/217 (9%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SDP+R LLTA EE+ L+ I+ G + A A
Sbjct: 109 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE----------------AGLFASEKLAVATK 152
Query: 271 VDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 326
++RR L G + K K++ +N+RLV+SIAK Y G GM DL+QEG GL+R
Sbjct: 153 KTSPQMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRA 212
Query: 327 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG 386
EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + G
Sbjct: 213 VEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLG 272
Query: 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
R P+ EE+A+ L+ ++ +L + P SL+ IG
Sbjct: 273 REPSPEEIAKEMDLTPDKVREILKVSQEPVSLETPIG 309
>gi|186681941|ref|YP_001865137.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186464393|gb|ACC80194.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 339
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 120/202 (59%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ + +Q ++ L +E L+ + PT +WA + L +L+ G
Sbjct: 44 LLTREQEVIFAQQVQLMMNLLAAKEELAVKLDHEPTLQEWADRVELGAEVLELQLSQGHQ 103
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV+++AK YQ + DL+QEG GL RG +KFD + G+KFSTYA+WW
Sbjct: 104 AKQKMIQANLRLVVAVAKKYQHRNLEFMDLIQEGTLGLERGVDKFDPALGYKFSTYAYWW 163
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q + ++++ Q RTIRLP H+ E ++K +++L + GR P E+A A L+ ++
Sbjct: 164 IRQGITRAIAQQGRTIRLPIHVFEKLNKIKRVQRELSQQLGRVPTTAEIANALSLTPSQV 223
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SL+ ++G Q+
Sbjct: 224 RECLYLARQPFSLEARVGEQQD 245
>gi|337290933|ref|YP_004629954.1| RNA polymerase sigma factor B [Corynebacterium ulcerans BR-AD22]
gi|334699239|gb|AEG84035.1| RNA polymerase sigma factor B [Corynebacterium ulcerans BR-AD22]
Length = 329
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 107/163 (65%), Gaps = 1/163 (0%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L+ + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 79 KRDLKVLVKDGRKARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 138
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
SKGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ ++++Y GR NE
Sbjct: 139 SKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQHLGREATNE 198
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
E+AE +G+ ++ +L + P SLD +G ++ P FI
Sbjct: 199 ELAEESGIDESKIELLLRQSRDPVSLDMPVGADEE-APLGDFI 240
>gi|308233952|ref|ZP_07664689.1| RNA polymerase, sigma 70 subunit, RpoD [Atopobium vaginae DSM
15829]
gi|328943964|ref|ZP_08241429.1| putative DNA-directed RNA polymerase sigma subunit RpoD [Atopobium
vaginae DSM 15829]
gi|327491933|gb|EGF23707.1| putative DNA-directed RNA polymerase sigma subunit RpoD [Atopobium
vaginae DSM 15829]
Length = 441
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 127/245 (51%), Gaps = 27/245 (11%)
Query: 191 SVKSGSTSRRKRPSVQEVDYS------DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLK 244
+ K S R R + +D S DP+R LL A+EE+ L+ IQ
Sbjct: 111 ATKKRSNKRSSRARTRRIDSSAVMLTGDPVRMYLKEIGKVDLLNASEEVHLAMKIQ---- 166
Query: 245 LEGLREVLSERCGGSPTFAQWAAAAG------VDQRELRRRLNYGILCKDKMITSNIRLV 298
G + AA G +QR L R G+ K + ++N+RL
Sbjct: 167 -----------AGTDASKKLEAAENGEIELTRAEQRRLMRIEQVGLDAKQALTSANLRLT 215
Query: 299 ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 358
+SIAK Y G GM DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ ++++DQ+
Sbjct: 216 VSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAIADQA 275
Query: 359 RTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSL 418
RTIR+P HMVE ++ +K+L + GR P EE+ E +S R+ + + P SL
Sbjct: 276 RTIRIPVHMVETINKLVRVQKELLQDLGREPTPEEIGEQMKMSADRVREIQKISQEPVSL 335
Query: 419 DQKIG 423
+ IG
Sbjct: 336 ETPIG 340
>gi|282900041|ref|ZP_06308000.1| sigC (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281195073|gb|EFA70011.1| sigC (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 432
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 132/227 (58%), Gaps = 26/227 (11%)
Query: 225 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLN--- 281
RLL AN Q A + L+L ++E L G P+ +WA+ AG+ +L+ L+
Sbjct: 110 RLLLANAAKQGDALVVPYLQLIEVQERLVSELGHRPSLERWASTAGIKLVDLKPTLSEGK 169
Query: 282 -------------------YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 322
GI K+ MI +N+RLV+S+AK YQ G+ L DLVQEG G
Sbjct: 170 RRWAEIAKLTVEELDQIQSQGIQAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLG 229
Query: 323 LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLY 382
L R EKFD +KG++FSTYA+WWI+Q + ++++ SRTIRLP H+ E ++K+A++++
Sbjct: 230 LERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIA 289
Query: 383 SENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR--SLDQKIGINQN 427
E GR P E++A ++ ++ VLL + PR SL+ K+G +++
Sbjct: 290 QEKGRTPTLEDLALELDMTPNQVREVLL--RVPRSVSLETKVGKDKD 334
>gi|317132028|ref|YP_004091342.1| RpoD subfamily RNA polymerase sigma-70 subunit [Ethanoligenens
harbinense YUAN-3]
gi|315470007|gb|ADU26611.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Ethanoligenens
harbinense YUAN-3]
Length = 372
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 106/156 (67%), Gaps = 1/156 (0%)
Query: 269 AGVDQRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
+G ++ EL +R+ G + + ++ +N+RLV+SIAK Y G GM DL+QEG GL++
Sbjct: 117 SGEEEIELAKRMGEGDVAARKRLSEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAV 176
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE +V +QL E GR
Sbjct: 177 EKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKVVRVERQLLQELGR 236
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
P EE+AE G+S+ ++ ++ + P SL+ IG
Sbjct: 237 QPQAEEIAELMGMSVDKVREIMKVAQEPVSLETPIG 272
>gi|226366207|ref|YP_002783990.1| RNA polymerase sigma factor SigB [Rhodococcus opacus B4]
gi|424852224|ref|ZP_18276621.1| RNA polymerase sigma factor RpoS [Rhodococcus opacus PD630]
gi|226244697|dbj|BAH55045.1| RNA polymerase sigma factor SigB [Rhodococcus opacus B4]
gi|254553060|dbj|BAH85842.1| RNA polymerase sigma B factor [Rhodococcus opacus]
gi|356666889|gb|EHI46960.1| RNA polymerase sigma factor RpoS [Rhodococcus opacus PD630]
Length = 323
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 93/248 (37%), Positives = 141/248 (56%), Gaps = 18/248 (7%)
Query: 192 VKSGSTSRRKRPSVQEVDYSDP----LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEG 247
+ S ST+ R RPS ++D P +R + LLTA +E++LS I+ L
Sbjct: 1 MTSPSTTTRIRPSAADLDAQSPAADLVRVYLNGIGRTALLTAADEVELSKRIEAGLYAAH 60
Query: 248 LREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQG 307
+ E +R SP +R+L + G + ++ +N+RLV+S+AK Y G
Sbjct: 61 ILET-GKRL--SPA----------KKRDLATVVREGQSARAHLLEANLRLVVSLAKRYTG 107
Query: 308 AGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHM 367
GM L DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+
Sbjct: 108 RGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHL 167
Query: 368 VEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
VE ++ +++L+ + GR ++E+AE +G+ ++ +L + P SLD +G N
Sbjct: 168 VEQVNKLARIKRELHQQLGREATDDELAEESGIPAHKIADLLDHSRDPVSLDMPVG-NDE 226
Query: 428 LKPSVCFI 435
P FI
Sbjct: 227 EAPLGDFI 234
>gi|111221463|ref|YP_712257.1| RNA polymerase essential primary sigma 70 factor [Frankia alni
ACN14a]
gi|111148995|emb|CAJ60675.1| RNA polymerase essential primary sigma 70 factor [Frankia alni
ACN14a]
Length = 409
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 123/217 (56%), Gaps = 20/217 (9%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SDP+R LLTA EE+ L+ I+ G + A A
Sbjct: 109 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE----------------AGLFASEKLAVATK 152
Query: 271 VDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 326
++RR L G + K K++ +N+RLV+SIAK Y G GM DL+QEG GL+R
Sbjct: 153 KTSPQMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRA 212
Query: 327 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG 386
EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + G
Sbjct: 213 VEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLG 272
Query: 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
R P+ EE+A+ L+ ++ +L + P SL+ IG
Sbjct: 273 REPSPEEIAKEMDLTPDKVREILKVSQEPVSLETPIG 309
>gi|256375630|ref|YP_003099290.1| RNA polymerase sigma factor SigB [Actinosynnema mirum DSM 43827]
gi|255919933|gb|ACU35444.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Actinosynnema
mirum DSM 43827]
Length = 330
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 106/161 (65%), Gaps = 1/161 (0%)
Query: 275 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASK 334
ELR + G+ K+ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD +K
Sbjct: 82 ELRALVRDGLRAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYTK 141
Query: 335 GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEV 394
GFKFSTYA WWI+QA+ + ++DQ RTIRLP H+VE ++ ++ L+ + GR NEE+
Sbjct: 142 GFKFSTYATWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQQLGREATNEEL 201
Query: 395 AEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
A +GLS ++ +L + P SLD +G ++ P FI
Sbjct: 202 AAESGLSPTKVSDLLDHARDPVSLDMPVGAEED-APLGDFI 241
>gi|428203773|ref|YP_007082362.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427981205|gb|AFY78805.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 375
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 116/177 (65%), Gaps = 1/177 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV-DQRELRRRLNYGI 284
LL EE++L+ ++ L+ E R L E PT A+WA A + ++R+L RL G
Sbjct: 76 LLKPEEEIELAHSVKFLVDAEETRRQLQEAFKRPPTKAEWAQALKMANERQLENRLYRGR 135
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R EKFD +KG+KFSTYA+W
Sbjct: 136 CAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRATEKFDPNKGYKFSTYAYW 195
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLS 401
WI+QA+ +++++ +RTIRLP H+VE ++K+A++ L R+PN +E+A+ +S
Sbjct: 196 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRVLKQNLQRNPNEDELAQELEVS 252
>gi|111023771|ref|YP_706743.1| RNA polymerase sigma factor SigB [Rhodococcus jostii RHA1]
gi|384100772|ref|ZP_10001829.1| RNA polymerase sigma factor SigB [Rhodococcus imtechensis RKJ300]
gi|397737305|ref|ZP_10503977.1| RNA polymerase principal sigma factor hrdA [Rhodococcus sp. JVH1]
gi|419965923|ref|ZP_14481858.1| RNA polymerase sigma factor SigB [Rhodococcus opacus M213]
gi|432340395|ref|ZP_19589837.1| RNA polymerase sigma factor SigB [Rhodococcus wratislaviensis IFP
2016]
gi|110823301|gb|ABG98585.1| sigma factor, sigma 70 type, group 2 (proven non-essential)
[Rhodococcus jostii RHA1]
gi|383841678|gb|EID80955.1| RNA polymerase sigma factor SigB [Rhodococcus imtechensis RKJ300]
gi|396926744|gb|EJI93981.1| RNA polymerase principal sigma factor hrdA [Rhodococcus sp. JVH1]
gi|414568597|gb|EKT79355.1| RNA polymerase sigma factor SigB [Rhodococcus opacus M213]
gi|430774588|gb|ELB90174.1| RNA polymerase sigma factor SigB [Rhodococcus wratislaviensis IFP
2016]
Length = 323
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 93/248 (37%), Positives = 141/248 (56%), Gaps = 18/248 (7%)
Query: 192 VKSGSTSRRKRPSVQEVDYSDP----LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEG 247
+ S ST+ R RPS ++D P +R + LLTA +E++LS I+ L
Sbjct: 1 MTSPSTTTRIRPSAADLDAQSPAADLVRVYLNGIGRTALLTAADEVELSKRIEAGLYAAH 60
Query: 248 LREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQG 307
+ E +R SP +R+L + G + ++ +N+RLV+S+AK Y G
Sbjct: 61 ILET-GKRL--SPA----------KKRDLATVVREGQSARAHLLEANLRLVVSLAKRYTG 107
Query: 308 AGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHM 367
GM L DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+
Sbjct: 108 RGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHL 167
Query: 368 VEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
VE ++ +++L+ + GR ++E+AE +G+ ++ +L + P SLD +G N
Sbjct: 168 VEQVNKLARIKRELHQQLGREATDDELAEESGIPAHKIADLLDHSRDPVSLDMPVG-NDE 226
Query: 428 LKPSVCFI 435
P FI
Sbjct: 227 EAPLGDFI 234
>gi|389865571|ref|YP_006367812.1| RNA polymerase sigma factor rpoD [Modestobacter marinus]
gi|388487775|emb|CCH89337.1| RNA polymerase sigma factor rpoD [Modestobacter marinus]
Length = 447
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 83/203 (40%), Positives = 123/203 (60%), Gaps = 19/203 (9%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 282
LLTA EE+ L+ I+ L E LR+V E SP ++RR LN+
Sbjct: 159 LLTAEEEVDLAKRIEAGLYGAERLRQVEEEGQKLSP--------------QMRRDLNWIV 204
Query: 283 --GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 340
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFST
Sbjct: 205 RDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 264
Query: 341 YAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGL 400
YA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ +
Sbjct: 265 YATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDI 324
Query: 401 SMKRLHAVLLSPKAPRSLDQKIG 423
+ ++ + + P SLDQ IG
Sbjct: 325 TPDKVLEIQQYAREPISLDQTIG 347
>gi|227504896|ref|ZP_03934945.1| RNA polymerase sigma factor SigB [Corynebacterium striatum ATCC
6940]
gi|227198489|gb|EEI78537.1| RNA polymerase sigma factor SigB [Corynebacterium striatum ATCC
6940]
Length = 337
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 108/164 (65%), Gaps = 1/164 (0%)
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
++R+L+ + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 86 EKRDLKILVREGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFD 145
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ ++++Y GR N
Sbjct: 146 YAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQSLGREATN 205
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
EE+AE +G+ ++ +L + P SLD +G ++ P FI
Sbjct: 206 EELAEESGIEESKIEMLLRQSRDPVSLDMPVGTDEE-APLGDFI 248
>gi|146739110|gb|ABQ42602.1| chloroplast RNA-polymerase sigma factor precursor [Heterosigma
akashiwo]
Length = 404
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 122/200 (61%), Gaps = 1/200 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ-RELRRRLNYGI 284
+LTA EE+ L+ I+ +++E L + G PT +W G+ ++R+ L
Sbjct: 87 MLTAQEEILLTRQIKRGMEIEKALVTLEKTLGRKPTEEEWVNFVGLKSIDDIRKNLKRAS 146
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K +I +N+RLV+S AK YQ G++ QDLVQEG GL + EKFD KGF+FSTYA W
Sbjct: 147 KSKSAIINANLRLVVSTAKAYQYRGVSFQDLVQEGTCGLHKATEKFDPRKGFRFSTYATW 206
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WIKQ + ++++DQSR +RLP H+ +A + ++ A+ ++E+ R P E+AEATGL+ ++
Sbjct: 207 WIKQGIMRAVTDQSRVVRLPVHVHDALFHIRRAKANFWTEHLREPTLAELAEATGLTPQK 266
Query: 405 LHAVLLSPKAPRSLDQKIGI 424
+ S+D+ +GI
Sbjct: 267 IVFYDTVKDKVSSIDKTVGI 286
>gi|229815176|ref|ZP_04445512.1| hypothetical protein COLINT_02221 [Collinsella intestinalis DSM
13280]
gi|229809186|gb|EEP44952.1| hypothetical protein COLINT_02221 [Collinsella intestinalis DSM
13280]
Length = 448
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 86/220 (39%), Positives = 121/220 (55%), Gaps = 23/220 (10%)
Query: 211 SDPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWA 266
DP+R LLTA EE M++ AG+ KLE Q A
Sbjct: 143 GDPVRMYLKEIGKVDLLTAAEEVDLAMKIEAGLDAADKLE----------------KQEA 186
Query: 267 AAAGVDQRELRRRL---NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 323
+ + E+RR + G+ K +I++N+RLV+SIAK Y G GM DL+QEG GL
Sbjct: 187 GEIELTRAEMRRLMRVEQVGLDAKQALISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGL 246
Query: 324 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYS 383
+R EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL
Sbjct: 247 IRAVEKFDYEKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLLQ 306
Query: 384 ENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
+ GR P EE+ +S R+ + + P SL+ IG
Sbjct: 307 DLGRDPTPEEIGAEMDMSADRVREIQKISQEPVSLETPIG 346
>gi|116074180|ref|ZP_01471442.1| Possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9916]
gi|116069485|gb|EAU75237.1| Possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9916]
Length = 364
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 130/213 (61%), Gaps = 26/213 (12%)
Query: 239 IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ----------------------REL 276
IQ LL+LE L++ + PT +WA AAG+ Q +EL
Sbjct: 55 IQRLLELEQLQQREANHVCHWPTKKEWAEAAGLTQEQLTTVLREGYGIWSDHSALESKEL 114
Query: 277 RRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF 336
++RL G +D+MI +N+RLV+++AK YQ G+ L DLVQEG GL R EKFD ++GF
Sbjct: 115 QKRLREGRRARDRMIQANLRLVVTVAKKYQQRGLELLDLVQEGTLGLERAVEKFDPTRGF 174
Query: 337 KFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAE 396
+FSTYA+WWI+Q + ++++ QSRTIRLP H+ E R+K+ ++++ + GR + +++
Sbjct: 175 RFSTYAYWWIRQGITRAIATQSRTIRLPVHVTEKLNRIKKVQQEIATNEGRIASISDLSR 234
Query: 397 ATGLSMKRLHAVLLSPKAPR--SLDQKIGINQN 427
A G+S + + L+ + PR SL+ ++G +Q+
Sbjct: 235 ALGISEETVRLTLM--RVPRSVSLETRVGKDQD 265
>gi|427738916|ref|YP_007058460.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427373957|gb|AFY57913.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 378
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 129/215 (60%)
Query: 209 DYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAA 268
+Y D + + LL +EE++L+ ++ L ++ + E+ G P A A
Sbjct: 63 EYDDAVGAFFKEMARYPLLKPDEEVELARRVRILEEVRQAQAAAQEKLGYFPDKAAIAKE 122
Query: 269 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 328
G+ Q++L RL G + K KMI SN+RLV+SIAK Y G+ DL+QEG GL R E
Sbjct: 123 MGIVQKQLEHRLYQGKVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATE 182
Query: 329 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH 388
KFD KG+KFSTYA+WWI+QA+ +++++ +RTIRLP H+VE ++K+A+++L + R+
Sbjct: 183 KFDPDKGYKFSTYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLARN 242
Query: 389 PNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
P EE+AE + +L + + SL+ ++G
Sbjct: 243 PTEEELAEVLDIPANQLRQLQQLRRQALSLNHRVG 277
>gi|210633964|ref|ZP_03297935.1| hypothetical protein COLSTE_01853 [Collinsella stercoris DSM 13279]
gi|210159008|gb|EEA89979.1| RNA polymerase sigma factor RpoD [Collinsella stercoris DSM 13279]
Length = 445
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 86/220 (39%), Positives = 121/220 (55%), Gaps = 23/220 (10%)
Query: 211 SDPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWA 266
DP+R LLTA EE M++ AG+ KLE Q A
Sbjct: 140 GDPVRMYLKEIGKVDLLTAAEEVDLAMKIEAGLDAADKLE----------------KQEA 183
Query: 267 AAAGVDQRELRRRL---NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 323
+ + E+RR + G+ K +I++N+RLV+SIAK Y G GM DL+QEG GL
Sbjct: 184 GEIELTRAEMRRLMRVEQVGLDAKQALISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGL 243
Query: 324 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYS 383
+R EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL
Sbjct: 244 IRAVEKFDYEKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLLQ 303
Query: 384 ENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
+ GR P EE+ +S R+ + + P SL+ IG
Sbjct: 304 DLGRDPTPEEIGAEMDMSADRVREIQKISQEPVSLETPIG 343
>gi|411116559|ref|ZP_11389046.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410712662|gb|EKQ70163.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 327
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 129/202 (63%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
+LT +E+ +Q ++ L+ +E L+++ PT A+ A+ + + EL+ ++ G
Sbjct: 32 MLTHEQEIIYGKQVQQMMALQEKKEALAKKLNREPTDAELASHTNLSEDELKGIMHRGRR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI +N+RLV+SIAK YQ + DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 92 AKQKMIEANLRLVVSIAKKYQKRNLEFLDLIQEGTMGLERGVEKFDPMRGYKFSTYAYWW 151
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++ Q+RTIRLP H+ E ++K+ +++L + GR + E+AEA L ++
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKKVQRELSQKLGRAASAAEIAEALELEPAQI 211
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L+ + P SLD ++G NQ+
Sbjct: 212 REFLIMARQPVSLDLRVGDNQD 233
>gi|423350097|ref|ZP_17327750.1| RNA polymerase sigma factor sigB [Turicella otitidis ATCC 51513]
gi|404387959|gb|EJZ83050.1| RNA polymerase sigma factor sigB [Turicella otitidis ATCC 51513]
Length = 329
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 135/226 (59%), Gaps = 15/226 (6%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSP-TFAQWAAAA 269
+D +R + LLTA++E++L+ I+ L E VL++ P T A+
Sbjct: 29 ADLVRVYLNGIGKTDLLTADDEVELAKQIEVGLYAE---HVLADH--DEPLTRAK----- 78
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
+R+L+ G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EK
Sbjct: 79 ---KRDLKVLARQGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEK 135
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
FD KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++LY GR P
Sbjct: 136 FDYQKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRLKRELYQNLGREP 195
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
+NEE+A +GL +++ +L + P SLD +G ++ P FI
Sbjct: 196 SNEELAGESGLPEEKVELLLRQSRDPVSLDMPVGADEE-APLGDFI 240
>gi|334563830|ref|ZP_08516821.1| RNA polymerase sigma factor SigB [Corynebacterium bovis DSM 20582]
Length = 332
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 87/235 (37%), Positives = 136/235 (57%), Gaps = 14/235 (5%)
Query: 201 KRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSP 260
+R S + +D +R + LLTA +E++LS I+ L + + + G +
Sbjct: 23 RRRSTNDNPSADLVRVYLNGIGKTALLTAEDEVELSKRIEVGLYAQHILD-----SGETL 77
Query: 261 TFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGC 320
T A+ +R+L+ G + ++ +N+RLV+S+AK Y G GM L DL+QEG
Sbjct: 78 TRAR--------KRDLKVLAREGRAARTHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 129
Query: 321 RGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQ 380
GL+R EKFD KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++
Sbjct: 130 LGLIRAMEKFDYDKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKRE 189
Query: 381 LYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
+Y + GR NEE+AE +G+ ++ +L + P SLD +G ++ P FI
Sbjct: 190 MYQQLGREATNEELAEESGIDEPKIEMLLKQSRDPVSLDMPVGSDEE-APLGDFI 243
>gi|332653408|ref|ZP_08419153.1| RNA polymerase sigma factor RpoD [Ruminococcaceae bacterium D16]
gi|332518554|gb|EGJ48157.1| RNA polymerase sigma factor RpoD [Ruminococcaceae bacterium D16]
Length = 446
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 126/217 (58%), Gaps = 17/217 (7%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLS----AGIQDLLKLEGLREVLSERCGGSPTFAQWA 266
DP+R LL+++EE++L+ AG + +L L+E G A+
Sbjct: 143 DDPVRMYLKEIGKVNLLSSDEEIELAQAMGAGAEAKEQLAELQE------SGEEIPAEVL 196
Query: 267 AAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 326
A EL + + G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++
Sbjct: 197 A-------ELNKAIKRGERAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKA 249
Query: 327 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG 386
EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE +V +QL E G
Sbjct: 250 VEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKVIRVSRQLLQELG 309
Query: 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
P+ EE+AE + ++R+ +L + P SL+ IG
Sbjct: 310 HDPSPEEIAEEMSMPVERVREILKIAQEPVSLETPIG 346
>gi|346310634|ref|ZP_08852649.1| hypothetical protein HMPREF9452_00518 [Collinsella tanakaei YIT
12063]
gi|345897589|gb|EGX67506.1| hypothetical protein HMPREF9452_00518 [Collinsella tanakaei YIT
12063]
Length = 443
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 98/265 (36%), Positives = 137/265 (51%), Gaps = 39/265 (14%)
Query: 179 TRAAEKAAANVMSVKSGSTSR----RKRPSVQEVDYS------DPLRYLRATTSSSRLLT 228
+ A+ A A + S K SR R R + +D S DP+R LLT
Sbjct: 97 VKVAKMADAEMASEKPKKKSRVRTARSRNRARGIDASTVMLTGDPVRMYLKEIGKVDLLT 156
Query: 229 ANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG------VDQRELRR 278
A +E M++ AG++ KLE AA AG + R L R
Sbjct: 157 AADEVDLAMKIEAGLEASNKLE-------------------AADAGEIELTRAEMRRLTR 197
Query: 279 RLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKF 338
G+ K +I++N+RLV+SIAK Y G GM DL+QEG GL+R EKFD KGFKF
Sbjct: 198 VEQVGLEAKQALISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYEKGFKF 257
Query: 339 STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEAT 398
STYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P EE+
Sbjct: 258 STYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLLQDLGRDPTPEEIGAEM 317
Query: 399 GLSMKRLHAVLLSPKAPRSLDQKIG 423
+S R+ + + P SL+ IG
Sbjct: 318 DMSADRVREIQKISQEPVSLETPIG 342
>gi|9837536|gb|AAG00589.1|AF288784_1 SigC [Synechococcus elongatus PCC 7942]
Length = 398
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 79/207 (38%), Positives = 121/207 (58%), Gaps = 22/207 (10%)
Query: 239 IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI-------------- 284
++D + L+ R+ L+ + G P+F WA ELR+ L G+
Sbjct: 90 LKDYVDLQEGRDRLTAQLGHRPSFEAWAKIVDCSLTELRQALQLGLHRWAEVCQLDLEEL 149
Query: 285 --LCK------DKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF 336
+CK D MI +N+RLV+S+AK YQ G+ L DLVQEG GL R EKFD +KG+
Sbjct: 150 KQVCKEGQRAKDHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGY 209
Query: 337 KFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAE 396
+FSTYA+WWI+Q + ++++ QSRTIRLP H+ E R+K+A++++ GR N EE+A+
Sbjct: 210 RFSTYAYWWIRQGITRAIATQSRTIRLPVHVTEKLTRIKKAQRKIAQTKGRTANLEEIAQ 269
Query: 397 ATGLSMKRLHAVLLSPKAPRSLDQKIG 423
++ ++ VLL SL+ ++G
Sbjct: 270 ELEMTPDQVREVLLRVPKSISLETRVG 296
>gi|145295824|ref|YP_001138645.1| RNA polymerase sigma factor SigB [Corynebacterium glutamicum R]
gi|417971573|ref|ZP_12612496.1| RNA polymerase sigma factor SigB [Corynebacterium glutamicum S9114]
gi|418244265|ref|ZP_12870688.1| RNA polymerase sigma factor SigB [Corynebacterium glutamicum ATCC
14067]
gi|12958494|gb|AAK09322.1|AF320818_1 sigma factor SigB [[Brevibacterium] flavum]
gi|140845744|dbj|BAF54743.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344044055|gb|EGV39736.1| RNA polymerase sigma factor SigB [Corynebacterium glutamicum S9114]
gi|354511671|gb|EHE84577.1| RNA polymerase sigma factor SigB [Corynebacterium glutamicum ATCC
14067]
Length = 331
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 106/163 (65%), Gaps = 1/163 (0%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L+ G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 81 KRDLKVLAKDGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 140
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
SKGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ ++++Y GR NE
Sbjct: 141 SKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQHLGREATNE 200
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
E+AE +G+ ++ +L + P SLD +G ++ P FI
Sbjct: 201 ELAEESGIEESKIEMLLRQSRDPVSLDMPVGADEE-APLGDFI 242
>gi|395236960|ref|ZP_10415090.1| RNA polymerase sigma factor sigB [Turicella otitidis ATCC 51513]
gi|394487844|emb|CCI83178.1| RNA polymerase sigma factor sigB [Turicella otitidis ATCC 51513]
Length = 339
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 135/226 (59%), Gaps = 15/226 (6%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSP-TFAQWAAAA 269
+D +R + LLTA++E++L+ I+ L E VL++ P T A+
Sbjct: 39 ADLVRVYLNGIGKTDLLTADDEVELAKQIEVGLYAE---HVLADH--DEPLTRAK----- 88
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
+R+L+ G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EK
Sbjct: 89 ---KRDLKVLARQGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEK 145
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
FD KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++LY GR P
Sbjct: 146 FDYQKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRLKRELYQNLGREP 205
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
+NEE+A +GL +++ +L + P SLD +G ++ P FI
Sbjct: 206 SNEELAGESGLPEEKVELLLRQSRDPVSLDMPVGADEE-APLGDFI 250
>gi|428203439|ref|YP_007082028.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427980871|gb|AFY78471.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 407
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 71/178 (39%), Positives = 114/178 (64%), Gaps = 2/178 (1%)
Query: 264 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 323
WA AG+D +EL R GI K+ MI +N+RLV+S+AK YQ G+ L DL+QEG GL
Sbjct: 146 HWAEIAGMDVQELDRIQKAGIRAKEHMIEANLRLVVSVAKKYQNRGLELLDLIQEGTLGL 205
Query: 324 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYS 383
R EKFD +KG++FSTYA+WWI+Q + ++++ QSR IRLP H+ E ++K+ ++Q+
Sbjct: 206 ERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRIIRLPVHITEKLNKIKKVQRQITQ 265
Query: 384 ENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFILNLADS 441
E GR EE+A+ ++ ++ +L+ + PRS+ ++ + ++ + +L DS
Sbjct: 266 EKGRPATAEEIAKQLEMTSGQVRDMLM--RVPRSVSLEVKVGKDKDTELVDLLETEDS 321
>gi|427419588|ref|ZP_18909771.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425762301|gb|EKV03154.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 391
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 125/202 (61%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A+EE++L+ ++ L +E L + + E +PT + A A + + + RL Y
Sbjct: 93 LLKADEEIELARQVKFLADVEALSKKMGEELKRTPTRLEMANALHCSEADFQHRLQYARS 152
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD KG+KFSTYA+WW
Sbjct: 153 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPDKGYKFSTYAYWW 212
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q + +++++ +RTIRLP H+VE ++K+ +++L + R P E+A L+ ++L
Sbjct: 213 IRQGITRTIANDARTIRLPIHIVEKLNKLKKTQRELRKQLNRTPTEAELAAELDLTPEQL 272
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
++ + SL+ ++G ++
Sbjct: 273 RSLQQVRRKSLSLNHRVGKGED 294
>gi|218440063|ref|YP_002378392.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218172791|gb|ACK71524.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 372
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 117/173 (67%), Gaps = 1/173 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV-DQRELRRRLNYGI 284
LL EE++L+ ++ L++ E R+ L PT +WA A G+ ++R+L RL G
Sbjct: 73 LLKPEEEIELAYTVKFLMESEEKRQQLQIDLQRPPTKLEWAQAMGLQNERQLENRLYRGR 132
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+W
Sbjct: 133 SAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 192
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEA 397
WI+QA+ +++++ +RTIRLP H+VE ++K+A++ L + R+P +E+A+A
Sbjct: 193 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRVLKQQLHRNPTEKELAQA 245
>gi|384915839|ref|ZP_10016044.1| RNA polymerase sigma factor rpoD [Methylacidiphilum fumariolicum
SolV]
gi|384526701|emb|CCG91915.1| RNA polymerase sigma factor rpoD [Methylacidiphilum fumariolicum
SolV]
Length = 625
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/207 (39%), Positives = 126/207 (60%), Gaps = 20/207 (9%)
Query: 240 QDLLKLEGLREVLSERCGGSPTFAQWAA---AAGVDQ----------------RELRRRL 280
Q++LKLE +EVL E+ G P + + V+Q EL++ L
Sbjct: 319 QEVLKLEKEKEVL-EKSGLDPEAKEKEGKQLSLKVEQLEHQIHLPLDLFKKKHEELKQWL 377
Query: 281 NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 340
N + K M+ +N+RLVISIAK Y G++ DL+QEG GL++ EKF+ +G+KFST
Sbjct: 378 NEALKAKSCMVEANLRLVISIAKKYSNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFST 437
Query: 341 YAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGL 400
YA WWI+QA+ +S++DQ+RTIR+P HM+E ++ +KQL E GR P EE+AE T +
Sbjct: 438 YATWWIRQAITRSIADQARTIRIPVHMIETINKLMRVQKQLIQELGREPTPEEIAEETQM 497
Query: 401 SMKRLHAVLLSPKAPRSLDQKIGINQN 427
S+ R+ A++ + P SL ++G +++
Sbjct: 498 SVDRIRAIIKMAQHPISLQAQVGESED 524
>gi|56752254|ref|YP_172955.1| RNA polymerase sigma factor SigC [Synechococcus elongatus PCC 6301]
gi|81300658|ref|YP_400866.1| RNA polymerase sigma factor SigC [Synechococcus elongatus PCC 7942]
gi|56687213|dbj|BAD80435.1| group2 RNA polymerase sigma factor RpoD5 [Synechococcus elongatus
PCC 6301]
gi|81169539|gb|ABB57879.1| group2 RNA polymerase sigma factor SigC [Synechococcus elongatus
PCC 7942]
Length = 398
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/207 (38%), Positives = 121/207 (58%), Gaps = 22/207 (10%)
Query: 239 IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI-------------- 284
++D + L+ R+ L+ + G P+F WA ELR+ L G+
Sbjct: 90 LKDYVDLQEGRDRLTAQLGHRPSFEAWAKIVDCSLTELRQALQLGLHRWAEVCQLDLEEL 149
Query: 285 --LCK------DKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF 336
+CK D MI +N+RLV+S+AK YQ G+ L DLVQEG GL R EKFD +KG+
Sbjct: 150 KQVCKEGQRAKDHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGY 209
Query: 337 KFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAE 396
+FSTYA+WWI+Q + ++++ QSRTIRLP H+ E R+K+A++++ GR N EE+A+
Sbjct: 210 RFSTYAYWWIRQGITRAIATQSRTIRLPVHVTEKLNRIKKAQRKIAQTKGRTANLEEIAQ 269
Query: 397 ATGLSMKRLHAVLLSPKAPRSLDQKIG 423
++ ++ VLL SL+ ++G
Sbjct: 270 ELEMTPDQVREVLLRVPKSISLETRVG 296
>gi|309791233|ref|ZP_07685765.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillochloris
trichoides DG-6]
gi|308226795|gb|EFO80491.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillochloris
trichoides DG6]
Length = 391
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 85/223 (38%), Positives = 126/223 (56%), Gaps = 17/223 (7%)
Query: 203 PSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQ--DLLKLEGLREVLSERCGGSP 260
P + ++ + DP+R LLTA +E++L+ ++ D+ + RE +
Sbjct: 84 PDLTDIAFDDPVRMYLQEIGQVPLLTAEKEVELAKSMEAGDIARQRIDREEYT------- 136
Query: 261 TFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGC 320
+G ++ EL R G + +I +N+RLV+SIAK Y G+ + DLVQEG
Sbjct: 137 --------SGRERMELERAYALGCESRQHLIQANLRLVVSIAKKYTSYGLTMMDLVQEGN 188
Query: 321 RGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQ 380
GL+R EKFD +KG KFSTYA WWI+QA+ ++++DQSRTIRLP HM EA +VK +
Sbjct: 189 IGLMRAVEKFDYTKGHKFSTYATWWIRQAITRAIADQSRTIRLPVHMGEAISQVKRTSHK 248
Query: 381 LYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
L R P EE+AEA G+S ++ L + P SL+ +G
Sbjct: 249 LQQSMQREPTPEEIAEAMGISAGKVRRTLEASMHPLSLEMPVG 291
>gi|434389143|ref|YP_007099754.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428020133|gb|AFY96227.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 422
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 121/200 (60%), Gaps = 26/200 (13%)
Query: 252 LSERCGGSPTFAQWAAAAGVDQRELRRRLNYG----------------------ILCKDK 289
L+ + G P+ +WA+ AG+ EL+ RL G K+
Sbjct: 127 LTAQLGHRPSPERWASTAGIALAELKPRLAAGKQRWAELAQMTVAEIDALQLAGTRAKEH 186
Query: 290 MITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQA 349
MI +N+RLV+S+AK YQ G+ L DL+QEG GL R +KFD +KG++FSTYA+WWI+Q
Sbjct: 187 MIKANLRLVVSVAKKYQNRGLELLDLIQEGTMGLERAVDKFDPTKGYRFSTYAYWWIRQG 246
Query: 350 VRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVL 409
+ ++++ QSR IRLP H+ E ++K+ +++L E GR P EEVA+A +++ +L VL
Sbjct: 247 ITRAIATQSRNIRLPVHITEKLNKIKKVQRELSIETGRPPRLEEVAKALDMTLVQLQEVL 306
Query: 410 LSPKAPR--SLDQKIGINQN 427
+ + PR SLD K+G +++
Sbjct: 307 M--RVPRSVSLDVKVGKDRD 324
>gi|356565804|ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 551
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/260 (31%), Positives = 157/260 (60%), Gaps = 6/260 (2%)
Query: 164 IAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSS 223
+ V+S ++ E K RR R A + S+ T + + + + +S L T +
Sbjct: 197 VVVQSSKKKENKTRRKREFVSTAVSSQSL----TLKANQEDL--LGFSASLVKRAPNTKN 250
Query: 224 SRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYG 283
R+L A E ++S G++ L +LE +R + E + + WA A+GVD++ L++ L+ G
Sbjct: 251 KRILVAKREAEMSKGVKVLAELEKIRTAIEEDTKRVASLSTWAEASGVDEKVLQKLLHRG 310
Query: 284 ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH 343
C+D++I S LV+ +A+ Y+G G+ L DL+Q G G+++GAE+FD+++G+KFSTY
Sbjct: 311 YYCQDELIRSTRSLVLYLARKYRGMGIALDDLLQAGYVGVLQGAERFDSTRGYKFSTYVQ 370
Query: 344 WWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMK 403
+WI++++ + ++ +R I +P+ + A ++++ARK + S + + P++ E+A+ TGLS+
Sbjct: 371 YWIRKSILRVVARYARGIVIPWSLNRAINQIQKARKAMKSTHKKCPDDYEIAKMTGLSLD 430
Query: 404 RLHAVLLSPKAPRSLDQKIG 423
++ + + S+DQK+G
Sbjct: 431 KIKSASNCLRIVASIDQKVG 450
>gi|289570879|ref|ZP_06451106.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis T17]
gi|289544633|gb|EFD48281.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis T17]
Length = 528
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 120/198 (60%), Gaps = 9/198 (4%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L LSER P G+ R++ G
Sbjct: 240 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLP---------GIHHRDMMWICRDGDR 290
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 291 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 350
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 351 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 410
Query: 406 HAVLLSPKAPRSLDQKIG 423
+ + P SLDQ IG
Sbjct: 411 LEIQQYAREPISLDQTIG 428
>gi|56750024|ref|YP_170725.1| group2 RNA polymerase sigma factor RpoD6 [Synechococcus elongatus
PCC 6301]
gi|56684983|dbj|BAD78205.1| group2 RNA polymerase sigma factor RpoD6 [Synechococcus elongatus
PCC 6301]
Length = 316
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/194 (41%), Positives = 120/194 (61%), Gaps = 17/194 (8%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA++E++L +Q ++ L L E S+R TF + AA + G
Sbjct: 38 LLTADQEIELGQKVQVMMNL--LEETSSDR-----TFTEAETAA----------IQLGQR 80
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K++MI +N+RLV+S+AK YQG G+ DL+QEG GL R EKFD SKG+KFSTYA WW
Sbjct: 81 AKERMIKANLRLVVSVAKKYQGKGLEFLDLIQEGALGLERAVEKFDPSKGYKFSTYAFWW 140
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q++ ++++ QSRTIRLP H+ E ++++ ++L E GR P+ +E+AEA L + L
Sbjct: 141 IRQSMTRAIACQSRTIRLPVHLTERLSQIRKVTRELAHELGRLPSRQEIAEAVQLPLNDL 200
Query: 406 HAVLLSPKAPRSLD 419
+L + SLD
Sbjct: 201 ETILRQSRQCTSLD 214
>gi|72161271|ref|YP_288928.1| sigma-70 factor [Thermobifida fusca YX]
gi|71915003|gb|AAZ54905.1| sigma-70 factor [Thermobifida fusca YX]
Length = 388
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/198 (41%), Positives = 124/198 (62%), Gaps = 7/198 (3%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE++L+ I+ + L +++ + R G P AQ++ D EL R G L
Sbjct: 99 LLTAEEEVELAKAIE--IGLYAEQKLRAARTG--PVPAQYSPEWFEDLNELVRE---GKL 151
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++I SN+RLV+S+AK Y G G+ L DL+QEG GL+R EKFD ++G+KFSTYA WW
Sbjct: 152 AKRRLIESNLRLVVSVAKRYLGRGLALLDLIQEGNLGLIRAVEKFDYTRGYKFSTYATWW 211
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE+ R+ R++L+ E GR P E++ + R+
Sbjct: 212 IRQAITRAIADQARTIRVPVHMVESINRLARTRRRLHQELGREPTLHELSRELNVDHDRV 271
Query: 406 HAVLLSPKAPRSLDQKIG 423
+ + P SL IG
Sbjct: 272 VEIHRVSQEPISLHTPIG 289
>gi|340354650|ref|ZP_08677352.1| DNA-directed RNA polymerase sigma subunit SigA [Sporosarcina
newyorkensis 2681]
gi|339623173|gb|EGQ27678.1| DNA-directed RNA polymerase sigma subunit SigA [Sporosarcina
newyorkensis 2681]
Length = 389
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 98/281 (34%), Positives = 152/281 (54%), Gaps = 33/281 (11%)
Query: 143 SADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKR 202
S ++EP E + L++ +Q I + + + + K + A E+ N +SV G
Sbjct: 42 SFEMEPEQFE-EFLDQIEAQGIEMDRKEEADAK---SDAEEQFDLNDLSVPPG------- 90
Query: 203 PSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTF 262
V +DP+R LLT EE+ L+ IQ+ ++ E L+E +P
Sbjct: 91 -----VRINDPVRMYLKEIGRVDLLTGKEEVDLAIRIQESIEAEA---ELAETNEMTPK- 141
Query: 263 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 322
+D +R G K K+ +N+RLV+SIAK Y G GM DL+QEG G
Sbjct: 142 --------IDAAIIR-----GENAKKKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMG 188
Query: 323 LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLY 382
L++ EKFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL
Sbjct: 189 LIKAVEKFDHTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLL 248
Query: 383 SENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
+ GR P+ EE+ E L+ +++ +L + P SL+ IG
Sbjct: 249 QDLGREPSPEEIGEEMDLTPEKVREILKIAQEPVSLETPIG 289
>gi|318040801|ref|ZP_07972757.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
CB0101]
Length = 381
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 129/214 (60%), Gaps = 26/214 (12%)
Query: 238 GIQDLLKLEGLREVLSERCGGSPTFAQ----------------------WAAAAGVDQRE 275
+Q+L+ LE ++ L+ + G P Q WA + + E
Sbjct: 66 ALQELIDLEDDQQRLASQLGHWPAVQQLAEQQRCTVSELREQIRQKQQAWAEHSNLSVAE 125
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 335
L++ L++G +D+MI +N+RLV+++AK YQ GM L DLVQEG GL R EK+D ++G
Sbjct: 126 LKQALHHGRRARDRMIQANLRLVVAVAKKYQQRGMELLDLVQEGTLGLERAVEKYDPTRG 185
Query: 336 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVA 395
F+FSTYA+WWI+Q + ++++ QSRTIRLP H+ E R+K+A++Q+ +E+GR + ++A
Sbjct: 186 FRFSTYAYWWIRQGITRAIATQSRTIRLPVHVTEKLNRIKKAQRQIATEHGRLASVSDLA 245
Query: 396 EATGLSMKRLHAVLLSPKAPR--SLDQKIGINQN 427
GLS + + L+ + PR SLD ++G Q+
Sbjct: 246 RELGLSEEVVRLTLM--RVPRSVSLDTRVGREQD 277
>gi|307153454|ref|YP_003888838.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306983682|gb|ADN15563.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 372
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 118/173 (68%), Gaps = 1/173 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV-DQRELRRRLNYGI 284
LL EE++L+ ++ L++ E R+ L + P+ +WA A G+ ++R+L RL G
Sbjct: 73 LLKPEEEIELAYTVKFLMESEEKRQELQVQLERPPSKLEWAQAMGLKNERQLENRLYRGR 132
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+W
Sbjct: 133 AAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 192
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEA 397
WI+QA+ +++++ +RTIRLP H+VE ++K+A++ L + R+P +E+A+A
Sbjct: 193 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRVLKQQLHRNPTEQELAQA 245
>gi|227833285|ref|YP_002834992.1| RNA polymerase sigma factor SigB [Corynebacterium aurimucosum ATCC
700975]
gi|262184270|ref|ZP_06043691.1| RNA polymerase sigma factor SigB [Corynebacterium aurimucosum ATCC
700975]
gi|227454301|gb|ACP33054.1| RNA polymerase sigma factor B [Corynebacterium aurimucosum ATCC
700975]
Length = 331
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 107/164 (65%), Gaps = 1/164 (0%)
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
++R+L+ G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 80 EKRDLKILAREGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFD 139
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ ++++Y GR N
Sbjct: 140 YAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQSLGREATN 199
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
EE+AE +G+ ++ +L + P SLD +G ++ P FI
Sbjct: 200 EELAEESGIEESKIEMLLRQSRDPVSLDMPVGTDEE-APLGDFI 242
>gi|383788491|ref|YP_005473060.1| RNA polymerase sigma factor RpoD [Caldisericum exile AZM16c01]
gi|381364128|dbj|BAL80957.1| RNA polymerase sigma factor RpoD [Caldisericum exile AZM16c01]
Length = 392
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 127/229 (55%), Gaps = 36/229 (15%)
Query: 195 GSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSE 254
G SR+ V+ + +P++ AT S LLT EEM+L+ I
Sbjct: 86 GKLSRKAVEEVEITELKNPIQSYLATIGSVDLLTPEEEMELAKKI--------------- 130
Query: 255 RCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQD 314
GS +WA ++ +N+RLV+SIAK Y G G++ D
Sbjct: 131 -AHGSEEEKKWAKEK--------------------LLRANLRLVVSIAKRYTGHGLSFLD 169
Query: 315 LVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRV 374
L+QEG GL+R AEKFD KGF+FSTYA WWI+QA+ ++L+DQSR IR+P HMV++ ++
Sbjct: 170 LIQEGNLGLIRAAEKFDYRKGFRFSTYATWWIRQAITRALADQSRLIRVPVHMVDSINKI 229
Query: 375 KEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
++A K+L E GR P +E+AE TG+S K++ L + P SL+ +G
Sbjct: 230 EKASKELIQELGREPTYKELAERTGISEKKISKYLRLAQQPLSLEMPVG 278
>gi|358445390|ref|ZP_09156000.1| RNA polymerase sigma factor [Corynebacterium casei UCMA 3821]
gi|356608836|emb|CCE54245.1| RNA polymerase sigma factor [Corynebacterium casei UCMA 3821]
Length = 334
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 108/164 (65%), Gaps = 1/164 (0%)
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
++R+++ + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 83 EKRDMKILVKEGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFD 142
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ ++++Y GR N
Sbjct: 143 YAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQSLGREATN 202
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
EE+AE +G+ ++ +L + P SLD +G ++ P FI
Sbjct: 203 EELAEESGIEENKIEMLLRQSRDPVSLDMPVGADEE-APLGDFI 245
>gi|15827492|ref|NP_301755.1| RNA polymerase sigma factor [Mycobacterium leprae TN]
gi|221229969|ref|YP_002503385.1| RNA polymerase sigma factor [Mycobacterium leprae Br4923]
gi|699190|gb|AAA62955.1| rpoT [Mycobacterium leprae]
gi|4587111|dbj|BAA76621.1| RpoT [Mycobacterium leprae]
gi|13093042|emb|CAC31403.1| RNA polymerase sigma factor [Mycobacterium leprae]
gi|219933076|emb|CAR71117.1| RNA polymerase sigma factor [Mycobacterium leprae Br4923]
Length = 574
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 122/198 (61%), Gaps = 9/198 (4%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L LSER PT AQ +R++ G
Sbjct: 286 LLNAEEEVELAKRIEAGLYATQLMTELSERGTKLPT-AQ--------RRDMMWICRDGDR 336
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 337 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 396
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 397 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 456
Query: 406 HAVLLSPKAPRSLDQKIG 423
+ + P SLDQ IG
Sbjct: 457 LEIQQYAREPISLDQTIG 474
>gi|81300366|ref|YP_400574.1| principal RNA polymerase sigma factor SigA [Synechococcus elongatus
PCC 7942]
gi|81169247|gb|ABB57587.1| principal RNA polymerase sigma factor SigA [Synechococcus elongatus
PCC 7942]
Length = 310
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/194 (41%), Positives = 120/194 (61%), Gaps = 17/194 (8%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA++E++L +Q ++ L L E S+R TF + AA + G
Sbjct: 32 LLTADQEIELGQKVQVMMNL--LEETSSDR-----TFTEAETAA----------IQLGQR 74
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K++MI +N+RLV+S+AK YQG G+ DL+QEG GL R EKFD SKG+KFSTYA WW
Sbjct: 75 AKERMIKANLRLVVSVAKKYQGKGLEFLDLIQEGALGLERAVEKFDPSKGYKFSTYAFWW 134
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q++ ++++ QSRTIRLP H+ E ++++ ++L E GR P+ +E+AEA L + L
Sbjct: 135 IRQSMTRAIACQSRTIRLPVHLTERLSQIRKVTRELAHELGRLPSRQEIAEAVQLPLNDL 194
Query: 406 HAVLLSPKAPRSLD 419
+L + SLD
Sbjct: 195 ETILRQSRQCTSLD 208
>gi|302525710|ref|ZP_07278052.1| RNA polymerase sigma factor RpoS [Streptomyces sp. AA4]
gi|302434605|gb|EFL06421.1| RNA polymerase sigma factor RpoS [Streptomyces sp. AA4]
Length = 317
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 130/230 (56%), Gaps = 24/230 (10%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+D +R + LLTA +E++L+ I+ + FAQ
Sbjct: 18 ADLVRVYLNGIGKTALLTAADEVELAKRIE------------------AGVFAQHMLDTA 59
Query: 271 VD-----QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 325
D ++ELR + G + K+ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R
Sbjct: 60 EDLTPQRRKELRALVRDGHVAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIR 119
Query: 326 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSEN 385
EKFD SKGFKFSTYA WWI+QA+ + ++DQ RTIRLP H+VE ++ R+ L+ +
Sbjct: 120 AVEKFDYSKGFKFSTYATWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIRRDLHQQL 179
Query: 386 GRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
GR +EE++ +G+ + ++ +L + P SLD +G ++ P FI
Sbjct: 180 GRDATHEELSAESGIPVHKISDLLDQSRDPVSLDMPVGTEED-APLGDFI 228
>gi|194699556|gb|ACF83862.1| unknown [Zea mays]
gi|223944677|gb|ACN26422.1| unknown [Zea mays]
gi|413917282|gb|AFW57214.1| RNA polymerase sigma factor 1 isoform 1 [Zea mays]
gi|413917283|gb|AFW57215.1| RNA polymerase sigma factor 1 isoform 2 [Zea mays]
gi|413917284|gb|AFW57216.1| RNA polymerase sigma factor 1 isoform 3 [Zea mays]
Length = 496
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/206 (40%), Positives = 123/206 (59%), Gaps = 2/206 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR T S LLT + +QLS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 184 YLRGTVSKD-LLTHKQVVQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQSLRIPAPE 242
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 335
LR R+ L ++ + SN RLVISIA+ Y G+ L DL+Q G GL+RG EKFDAS+G
Sbjct: 243 LRARMRESFLAREMLAMSNTRLVISIAQKYDNLGVELPDLIQGGLIGLLRGIEKFDASRG 302
Query: 336 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVA 395
F+ STY +WWI+Q V ++L+D SR+ RLP ++ E ++ A+ L + G P E +A
Sbjct: 303 FRISTYVYWWIRQGVSRALADNSRSFRLPTYLHERLVAIRGAKYAL-EDQGIAPTVENIA 361
Query: 396 EATGLSMKRLHAVLLSPKAPRSLDQK 421
E+ +S K++H + SLDQ+
Sbjct: 362 ESLNISEKKVHNATEAVHKVISLDQQ 387
>gi|434405397|ref|YP_007148282.1| RNA polymerase, sigma subunit, RpsC/SigC [Cylindrospermum stagnale
PCC 7417]
gi|428259652|gb|AFZ25602.1| RNA polymerase, sigma subunit, RpsC/SigC [Cylindrospermum stagnale
PCC 7417]
Length = 412
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 135/237 (56%), Gaps = 31/237 (13%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 274
RYLR T + AN Q I L+L ++E LS G P+ +WA AG++
Sbjct: 85 RYLRMRT-----VLANAAKQGDEVIVPYLRLIEVQERLSSELGHRPSLERWATTAGIELP 139
Query: 275 ELRRRL----------------------NYGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
+L+ L + G+ K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 140 DLKPTLANGKRRWAETAKLTVEELDQVQSQGLQAKEHMIKANLRLVVSVAKKYQNRGLEL 199
Query: 313 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY 372
DLVQEG GL R EKFD +KG++FSTYA+WWI+Q + ++++ SRTIRLP H+ E
Sbjct: 200 LDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLN 259
Query: 373 RVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR--SLDQKIGINQN 427
++K+A++++ E GR P E++A ++ ++ VLL + PR SL+ K+G +++
Sbjct: 260 KIKKAQRKIAQEKGRTPTLEDLAIELEMTPAQVREVLL--RVPRSVSLETKVGKDKD 314
>gi|282895663|ref|ZP_06303788.1| sigF (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281199357|gb|EFA74222.1| sigF (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 396
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 130/198 (65%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL +EE++L+ ++ L +++ L+ L E+ G S T + A +++++L RL G +
Sbjct: 98 LLKPDEEVELAHRVRFLEEVKDLQAALEEQFGHSATKGEIANKFDLNEKQLENRLYQGRV 157
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R EKFD KG+KFSTYA+WW
Sbjct: 158 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 217
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +++++ +RTIRLP H+VE ++K+A+++L + R+P E+AE +++++L
Sbjct: 218 IRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKFARNPTEAEMAEFLEMTVQQL 277
Query: 406 HAVLLSPKAPRSLDQKIG 423
+ + SL+ ++G
Sbjct: 278 RQLQQLRRQALSLNHRVG 295
>gi|398786196|ref|ZP_10548973.1| RNA polymerase sigma factor [Streptomyces auratus AGR0001]
gi|396993817|gb|EJJ04874.1| RNA polymerase sigma factor [Streptomyces auratus AGR0001]
Length = 385
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/203 (40%), Positives = 124/203 (61%), Gaps = 13/203 (6%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE++L+ ++ L E E+ +P + A +L R + G +
Sbjct: 101 LLTAAEEVELARRVEAGLFAE-------EKLTNTPDLSTRLAV------DLDRLVVLGRM 147
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++I SN+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G+KFSTYA WW
Sbjct: 148 AKRRLIESNLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWW 207
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++L+DQ+RTIR+P H+VE RV ++++ E G P EEVA GL+ +R+
Sbjct: 208 IRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPEEVAAHLGLTGERV 267
Query: 406 HAVLLSPKAPRSLDQKIGINQNL 428
VL + P SL +G +++
Sbjct: 268 TEVLRLAQEPVSLHAPVGEEEDV 290
>gi|186687052|ref|YP_001870195.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186469355|gb|ACC85154.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 316
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 124/198 (62%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT ++E+ + +Q ++ +E R L+ + PT + A + G ++ EL+ + G
Sbjct: 21 LLTPDQEITNARLVQQMMAVEEQRSNLALQLNRQPTDLELATSLGQNEAELQSVIQQGQK 80
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+T+N+RLV+S+AK YQ ++ DL+QEG GL RG EKFD +KG+K STY +WW
Sbjct: 81 AKQKMVTANLRLVVSVAKKYQNYSLDFLDLLQEGALGLQRGIEKFDPNKGYKLSTYVYWW 140
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I Q++ ++++D+SRTIRLP H+ E +++ ++QL GR P E+AE+ LS ++
Sbjct: 141 ITQSITRAVADKSRTIRLPIHINEKLNKIRRVQQQLSQSLGRPPVVAEIAESLNLSPNQI 200
Query: 406 HAVLLSPKAPRSLDQKIG 423
L K SL++++G
Sbjct: 201 REYLQISKPLVSLEKRVG 218
>gi|386386524|ref|ZP_10071665.1| RNA polymerase sigma factor [Streptomyces tsukubaensis NRRL18488]
gi|385666011|gb|EIF89613.1| RNA polymerase sigma factor [Streptomyces tsukubaensis NRRL18488]
Length = 409
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 122/198 (61%), Gaps = 12/198 (6%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE++L+ ++ L E E+ G+P AA +D R + G +
Sbjct: 124 LLTAAEEVELARCVEAGLFAE-------EKLAGTPDLNDSPLAADLD-----RLVVLGRM 171
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G+KFSTYA WW
Sbjct: 172 AKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWW 231
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++L+DQ+RTIR+P H+VE RV ++++ E+G+ P +EVA L +R+
Sbjct: 232 IRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQEHGQEPTADEVAAQLDLPPERI 291
Query: 406 HAVLLSPKAPRSLDQKIG 423
VL + P SL +G
Sbjct: 292 GEVLRLAQEPVSLHAPVG 309
>gi|358456365|ref|ZP_09166589.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
gi|357080541|gb|EHI89976.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
Length = 413
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 88/231 (38%), Positives = 128/231 (55%), Gaps = 24/231 (10%)
Query: 199 RRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGG 258
RR P V DP+R + + LLTA E+ L+ I+ GL
Sbjct: 101 RRVAPREAPVTAHDPVRLYLTSIGKTPLLTAAGEVDLAKRIE-----AGL---------- 145
Query: 259 SPTFAQWAAAAGVDQRELRRRLNY------GILCKDKMITSNIRLVISIAKNYQGAGMNL 312
FA + A D R+RL+ G +++ +N+RLV+SIA+ Y G GM
Sbjct: 146 ---FAGYKLANDADDMSPRQRLDLEAIELDGQRANRQLVEANLRLVVSIARRYAGRGMLF 202
Query: 313 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY 372
D+VQEG GL+R EKFD +KG+KFSTYA WW++QA+ ++L+DQSRT+RLP H+VE
Sbjct: 203 LDVVQEGNLGLIRAVEKFDYTKGYKFSTYATWWVRQAITRALADQSRTVRLPVHLVELLN 262
Query: 373 RVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
++ R++L E GR P+ EE+A A G++ R+ + + P SLD +G
Sbjct: 263 QLARLRRELLMELGREPSREELATALGVTANRVDELWRISREPVSLDSPVG 313
>gi|427718372|ref|YP_007066366.1| RNA polymerase, sigma subunit, RpsC/SigC [Calothrix sp. PCC 7507]
gi|427350808|gb|AFY33532.1| RNA polymerase, sigma subunit, RpsC/SigC [Calothrix sp. PCC 7507]
Length = 416
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 135/237 (56%), Gaps = 31/237 (13%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 274
RYLR R++ AN A I+ L+L ++E L+ G P+ +WA AG+
Sbjct: 89 RYLRM-----RIVLANAAKLGDAVIEPYLRLIEVQERLTSELGHRPSLERWATTAGIVLS 143
Query: 275 ELRRRL----------------------NYGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
+L+ L G+ K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 144 DLKPTLANGKRRWAEIAKLTVEELEQIQTQGLQAKEHMIKANLRLVVSVAKKYQNRGLEL 203
Query: 313 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY 372
DLVQEG GL R EKFD +KG++FSTYA+WWI+Q + ++++ SRTIRLP H+ E
Sbjct: 204 LDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLN 263
Query: 373 RVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR--SLDQKIGINQN 427
++K+A++++ E GR P E++A ++ ++ VLL + PR SL+ K+G +++
Sbjct: 264 KIKKAQRKIAQEKGRTPTLEDLAVELEMTPTQVREVLL--RVPRSVSLETKVGKDKD 318
>gi|213964561|ref|ZP_03392761.1| RNA polymerase sigma factor RpoD [Corynebacterium amycolatum SK46]
gi|213952754|gb|EEB64136.1| RNA polymerase sigma factor RpoD [Corynebacterium amycolatum SK46]
Length = 329
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 131/225 (58%), Gaps = 14/225 (6%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+D +R + LL+A EE++LS I+ + E L + G T A+
Sbjct: 30 ADLVRVYLNGIGKTALLSAEEEVELSKRIEAGVYAEHLLQ-----TGAKMTRAK------ 78
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
+R+++ G + ++ +N+RLV+S+AK Y GM L DL+QEG GL+R EKF
Sbjct: 79 --KRDVKILAKEGKAARAHLLEANLRLVVSLAKRYTNRGMPLLDLIQEGNLGLIRAMEKF 136
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++LY + GR
Sbjct: 137 DYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKISRIKRELYQQLGREAT 196
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
NEE+AE +G+ ++ +L + P SLD +G ++ P FI
Sbjct: 197 NEELAEESGIPEAKIEMLLRQSRDPVSLDMPVGTDEE-APLGDFI 240
>gi|296117743|ref|ZP_06836327.1| RNA polymerase principal sigma factor SigB [Corynebacterium
ammoniagenes DSM 20306]
gi|295969474|gb|EFG82715.1| RNA polymerase principal sigma factor SigB [Corynebacterium
ammoniagenes DSM 20306]
Length = 334
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 108/164 (65%), Gaps = 1/164 (0%)
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
++R+++ + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 83 EKRDMKILVKEGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFD 142
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ ++++Y GR N
Sbjct: 143 YAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQSLGREATN 202
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
EE+AE +G+ ++ +L + P SLD +G ++ P FI
Sbjct: 203 EELAEESGIEENKIEMLLRQSRDPVSLDMPVGADEE-APLGDFI 245
>gi|291520418|emb|CBK75639.1| RNA polymerase, sigma 70 subunit, RpoD [Butyrivibrio fibrisolvens
16/4]
Length = 376
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/138 (49%), Positives = 96/138 (69%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+K+ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KG+KFSTYA WW
Sbjct: 138 AKNKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLMKAVEKFDYHKGYKFSTYATWW 197
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE+A A G+++ R+
Sbjct: 198 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQEYGREPTPEEIAAAMGITVDRV 257
Query: 406 HAVLLSPKAPRSLDQKIG 423
H +L + P SL+ IG
Sbjct: 258 HEILKISQEPVSLETPIG 275
>gi|4587113|dbj|BAA76622.1| RpoT [Mycobacterium leprae]
Length = 576
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 122/198 (61%), Gaps = 9/198 (4%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L LSER PT AQ +R++ G
Sbjct: 288 LLNAEEEVELAKRIEAGLYATQLMTELSERGTKLPT-AQ--------RRDMMWICRDGDR 338
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 339 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 398
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 399 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 458
Query: 406 HAVLLSPKAPRSLDQKIG 423
+ + P SLDQ IG
Sbjct: 459 LEIQQYAREPISLDQTIG 476
>gi|3893860|gb|AAC78467.1| RNA polymerase sigma factor 1 [Zea mays]
Length = 398
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/206 (40%), Positives = 123/206 (59%), Gaps = 2/206 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR T S LLT + +QLS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 86 YLRGTVSKD-LLTHKQVVQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQSLRIPAPE 144
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 335
LR R+ L ++ + SN RLVISIA+ Y G+ L DL+Q G GL+RG EKFDAS+G
Sbjct: 145 LRARMRESFLAREMLAMSNTRLVISIAQKYDNLGVELPDLIQGGLIGLLRGIEKFDASRG 204
Query: 336 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVA 395
F+ STY +WWI+Q V ++L+D SR+ RLP ++ E ++ A+ L + G P E +A
Sbjct: 205 FRISTYVYWWIRQGVSRALADNSRSFRLPTYLHERLVAIRGAKYAL-EDQGIAPTVENIA 263
Query: 396 EATGLSMKRLHAVLLSPKAPRSLDQK 421
E+ +S K++H + SLDQ+
Sbjct: 264 ESLNISEKKVHNATEAVHKVISLDQQ 289
>gi|281412780|ref|YP_003346859.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermotoga
naphthophila RKU-10]
gi|281373883|gb|ADA67445.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermotoga
naphthophila RKU-10]
Length = 407
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 109/156 (69%), Gaps = 1/156 (0%)
Query: 273 QRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+REL RR G K+K+ITSN+RLV+SIAK Y G G++ QDL+QEG GL++ EKFD
Sbjct: 149 ERELARRAQMGDKKAKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLLKAVEKFD 208
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ R++ Y ++G P+
Sbjct: 209 WRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLNRLRREYYQKHGEEPSI 268
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
EE+A+ G +++ +L + K SL+ IG +++
Sbjct: 269 EELAKMMGKPPEKIKEILEAAKETISLESPIGEDED 304
>gi|345851793|ref|ZP_08804757.1| RNA polymerase sigma factor [Streptomyces zinciresistens K42]
gi|345636744|gb|EGX58287.1| RNA polymerase sigma factor [Streptomyces zinciresistens K42]
Length = 442
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/198 (41%), Positives = 122/198 (61%), Gaps = 13/198 (6%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE++L+ ++ L E E+ GG+P A +L R + G +
Sbjct: 158 LLTAAEEVELARRVEAGLFAE-------EKLGGTPDLDSELAL------DLDRLVVMGRM 204
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G+KFSTYA WW
Sbjct: 205 AKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWW 264
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++L+DQ+RTIR+P H+VE RV ++++ E G P +EEVA+ L +R+
Sbjct: 265 IRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTHEEVADHLDLLPERV 324
Query: 406 HAVLLSPKAPRSLDQKIG 423
VL + P SL +G
Sbjct: 325 SEVLRLAQEPVSLHAPVG 342
>gi|229828460|ref|ZP_04454529.1| hypothetical protein GCWU000342_00522 [Shuttleworthia satelles DSM
14600]
gi|229793054|gb|EEP29168.1| hypothetical protein GCWU000342_00522 [Shuttleworthia satelles DSM
14600]
Length = 614
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/222 (39%), Positives = 125/222 (56%), Gaps = 4/222 (1%)
Query: 204 SVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSE--RCGGSPT 261
S V+ DP+R LLTA EE+ L+ ++ LK + E+L E R G
Sbjct: 295 STDAVNIDDPVRMYLKEIGKVHLLTAEEEVDLAQKMEKGLKADEQIEILREEIRSGDLSE 354
Query: 262 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCR 321
A + + L+ G K K+ +N+RLV+SIAK Y G GM DL+QEG
Sbjct: 355 EDMMNLEAQI--KILKNDSAVGERAKQKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNL 412
Query: 322 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL 381
GL++ EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL
Sbjct: 413 GLIKAVEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQL 472
Query: 382 YSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
E GR P+ EE+A + R+ +L + P SL+ IG
Sbjct: 473 LQELGREPSPEEIAREMETTPDRVREILKISQEPVSLETPIG 514
>gi|21466008|pdb|1L9U|H Chain H, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
gi|21466014|pdb|1L9U|Q Chain Q, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
Length = 332
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/230 (38%), Positives = 131/230 (56%), Gaps = 17/230 (7%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLS----AGIQDLLKL--------EGLREVLSERCGG 258
SDP+R LLT EE+ L+ G++ + KL E +REV+ + G
Sbjct: 2 SDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILG 61
Query: 259 SPTFAQWAAAAGVDQRELRRRLNY---GILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 315
+ + +EL+R L+ G + +I +N+RLV+SIAK Y G G++ DL
Sbjct: 62 TARVEEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDL 121
Query: 316 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVK 375
+QEG +GL+R EKF+ + FKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++
Sbjct: 122 IQEGNQGLIRAVEKFEYKRRFKFSTYATWWIRQAINRAIADQARTIRIPVHMVETINKLS 181
Query: 376 EARKQLYSENGRHPNNEEVAEAT--GLSMKRLHAVLLSPKAPRSLDQKIG 423
+QL E GR P+ EE+AEA G KR+ L + P SL+ IG
Sbjct: 182 RTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPVSLETPIG 231
>gi|406980501|gb|EKE02092.1| RNA polymerase sigma factor [uncultured bacterium]
Length = 348
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/135 (50%), Positives = 99/135 (73%)
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
+ K+K++ +N+RLV+SIAK Y G G++ DL+QEG GL+R AEKFD +KG+KFSTYA W
Sbjct: 103 IAKEKLVNANLRLVVSIAKKYIGRGLSFLDLIQEGNMGLMRAAEKFDYAKGYKFSTYATW 162
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+QA+ + ++D+SRTIRLP HM+E R+K+A + L +E R P EE+AE + + +
Sbjct: 163 WIQQAITRGIADKSRTIRLPVHMIETIGRIKKATRDLTNELNRKPTKEEIAERLDIPLSK 222
Query: 405 LHAVLLSPKAPRSLD 419
L AV+ S +A SL+
Sbjct: 223 LRAVIKSAQATISLE 237
>gi|403253616|ref|ZP_10919917.1| RNA polymerase, sigma 70 subunit, RpoD subfamily protein
[Thermotoga sp. EMP]
gi|418045507|ref|ZP_12683602.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermotoga
maritima MSB8]
gi|5030433|gb|AAC44889.2| sigma 70-type sigma factor SigA [Thermotoga maritima]
gi|351676392|gb|EHA59545.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermotoga
maritima MSB8]
gi|402811150|gb|EJX25638.1| RNA polymerase, sigma 70 subunit, RpoD subfamily protein
[Thermotoga sp. EMP]
Length = 407
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 109/156 (69%), Gaps = 1/156 (0%)
Query: 273 QRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+REL RR G K+K+ITSN+RLV+SIAK Y G G++ QDL+QEG GL++ EKFD
Sbjct: 149 ERELARRAQMGDKKAKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLLKAVEKFD 208
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ R++ Y ++G P+
Sbjct: 209 WRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLNRLRREYYQKHGEEPSI 268
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
EE+A+ G +++ +L + K SL+ IG +++
Sbjct: 269 EELAKMMGKPPEKIKEILEAAKETISLESPIGEDED 304
>gi|148270473|ref|YP_001244933.1| RpoD family RNA polymerase sigma factor [Thermotoga petrophila
RKU-1]
gi|170289132|ref|YP_001739370.1| RpoD family RNA polymerase sigma factor [Thermotoga sp. RQ2]
gi|147736017|gb|ABQ47357.1| RNA polymerase, sigma 70 subunit, RpoD family [Thermotoga
petrophila RKU-1]
gi|170176635|gb|ACB09687.1| RNA polymerase, sigma 70 subunit, RpoD family [Thermotoga sp. RQ2]
Length = 407
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 109/156 (69%), Gaps = 1/156 (0%)
Query: 273 QRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+REL RR G K+K+ITSN+RLV+SIAK Y G G++ QDL+QEG GL++ EKFD
Sbjct: 149 ERELARRAQMGDKKAKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLLKAVEKFD 208
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ R++ Y ++G P+
Sbjct: 209 WRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLNRLRREYYQKHGEEPSI 268
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
EE+A+ G +++ +L + K SL+ IG +++
Sbjct: 269 EELAKMMGKPPEKIKEILEAAKETISLESPIGEDED 304
>gi|262202178|ref|YP_003273386.1| RNA polymerase sigma factor RpoD [Gordonia bronchialis DSM 43247]
gi|262085525|gb|ACY21493.1| RNA polymerase sigma factor RpoD [Gordonia bronchialis DSM 43247]
Length = 489
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/254 (35%), Positives = 140/254 (55%), Gaps = 20/254 (7%)
Query: 176 ARRTRAAEKAAAN-VMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQ 234
A+ T EK A + V + R+ R + +D +R LL A EE++
Sbjct: 150 AKETATPEKTAGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVE 209
Query: 235 LSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKDK 289
L+ I+ L E LR ++ G T AQ +R LN+ G K+
Sbjct: 210 LAKRIEAGLFATERLRRIME--SGEKITTAQ------------KRDLNWISRDGNRAKNH 255
Query: 290 MITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQA 349
++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA
Sbjct: 256 LLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQA 315
Query: 350 VRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVL 409
+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++ +
Sbjct: 316 ITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQ 375
Query: 410 LSPKAPRSLDQKIG 423
+ P SLDQ IG
Sbjct: 376 QYAREPISLDQTIG 389
>gi|189219555|ref|YP_001940196.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Methylacidiphilum infernorum V4]
gi|189186413|gb|ACD83598.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Methylacidiphilum infernorum V4]
Length = 623
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/150 (45%), Positives = 104/150 (69%)
Query: 274 RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
+EL++ LN I K +M+ +N+RLVISIAK Y G++ DL+QEG GL++ EKF+
Sbjct: 369 QELKQWLNEAIKAKSEMVEANLRLVISIAKKYSNRGLSFLDLIQEGNMGLMKAVEKFEYR 428
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
+G+KFSTYA WWI+QA+ +S++DQ+RTIR+P HM+E ++ +KQL E GR P EE
Sbjct: 429 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLMRVQKQLIQELGREPTPEE 488
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
+A+ T +S+ R+ ++ + P SL ++G
Sbjct: 489 IADETQMSVDRIRTIIKMAQHPISLQAQVG 518
>gi|15644200|ref|NP_229250.1| RNA polymerase sigma-A factor [Thermotoga maritima MSB8]
gi|6831649|sp|P77994.3|RPOD_THEMA RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A
gi|4982015|gb|AAD36519.1|AE001796_11 RNA polymerase sigma-A factor [Thermotoga maritima MSB8]
Length = 399
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 109/156 (69%), Gaps = 1/156 (0%)
Query: 273 QRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+REL RR G K+K+ITSN+RLV+SIAK Y G G++ QDL+QEG GL++ EKFD
Sbjct: 141 ERELARRAQMGDKKAKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLLKAVEKFD 200
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ R++ Y ++G P+
Sbjct: 201 WRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLNRLRREYYQKHGEEPSI 260
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
EE+A+ G +++ +L + K SL+ IG +++
Sbjct: 261 EELAKMMGKPPEKIKEILEAAKETISLESPIGEDED 296
>gi|237785656|ref|YP_002906361.1| RNA polymerase sigma factor SigB [Corynebacterium kroppenstedtii
DSM 44385]
gi|237758568|gb|ACR17818.1| RNA polymerase sigma factor B [Corynebacterium kroppenstedtii DSM
44385]
Length = 326
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 106/163 (65%), Gaps = 1/163 (0%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L+ G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 77 KRDLKAVAKDGRAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDY 136
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ ++++Y GR NE
Sbjct: 137 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQHLGREATNE 196
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
E+AE +G+ ++ +L + P SLD +G ++ P FI
Sbjct: 197 ELAEESGIDESKIDLLLKQSRDPVSLDMPVGTDEE-APLGDFI 238
>gi|427712306|ref|YP_007060930.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
gi|427376435|gb|AFY60387.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
Length = 318
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 121/202 (59%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L L R L G P+ +WA+ A + EL + G
Sbjct: 23 LLTHEQEILYGKQVQMLASLNETRTGLETALGREPSLEEWASQANLSPGELNEIIQGGER 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++++ RTIRLP H+ E ++K+A++QL GR E+A L+ ++
Sbjct: 143 IRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQSLGRAATINELAVELELTPAQV 202
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
L + P SLD ++G NQ+
Sbjct: 203 REYLERARQPLSLDVRVGDNQD 224
>gi|25028367|ref|NP_738421.1| RNA polymerase sigma factor SigB [Corynebacterium efficiens YS-314]
gi|259507424|ref|ZP_05750324.1| RNA polymerase principal sigma factor SigB [Corynebacterium
efficiens YS-314]
gi|23493652|dbj|BAC18621.1| sigma factor SigB [Corynebacterium efficiens YS-314]
gi|259164989|gb|EEW49543.1| RNA polymerase principal sigma factor SigB [Corynebacterium
efficiens YS-314]
Length = 333
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 106/163 (65%), Gaps = 1/163 (0%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L+ G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 83 KRDLKVLAKEGKKARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 142
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ ++++Y GR NE
Sbjct: 143 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQHLGREATNE 202
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
E+AE +G+ ++ +L + P SLD +G ++ P FI
Sbjct: 203 ELAEESGIEESKIEMLLRQSRDPVSLDMPVGADEE-APLGDFI 244
>gi|428214294|ref|YP_007087438.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoria acuminata
PCC 6304]
gi|428002675|gb|AFY83518.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoria acuminata
PCC 6304]
Length = 418
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 112/166 (67%), Gaps = 4/166 (2%)
Query: 264 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 323
QWAA A + EL R GI K+ MI +N+RLV+S+AK YQ G+ L DLVQEG GL
Sbjct: 157 QWAALASLTVEELERTQAEGIGAKEHMIEANLRLVVSVAKKYQNRGLELLDLVQEGTLGL 216
Query: 324 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYS 383
R +KFD +KG++FSTYA+WWI+Q + ++++ QSRTIRLP H+ E ++K+A+++L
Sbjct: 217 ERAVDKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKLSQ 276
Query: 384 ENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR--SLDQKIGINQN 427
E GR + E+VA+ ++ ++ VLL + PR SL+ K+G ++
Sbjct: 277 EKGRTASIEDVAKELEMTPAQVREVLL--RVPRSVSLETKVGKEKD 320
>gi|28493466|ref|NP_787627.1| RNA polymerase sigma factor [Tropheryma whipplei str. Twist]
gi|28476507|gb|AAO44596.1| RNA polymerase sigma factor [Tropheryma whipplei str. Twist]
Length = 387
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 126/214 (58%), Gaps = 15/214 (7%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP++ YL+ S LLTA+EE+ L+ I+ L E E LSE +P
Sbjct: 88 ADPVKDYLKQIGKVS-LLTADEEVSLAKRIEAGLFAE---EKLSESGDLAPKL------- 136
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
+RELR + G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EK
Sbjct: 137 ---KRELRWVVRDGQRAKDHLLAANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIRAVEK 193
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
FD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P
Sbjct: 194 FDYVKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLSRVQRQLLQDLGREP 253
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
+E+ + +R+ V + P SL +G
Sbjct: 254 TPDELGRELDMPPERVVEVQKYGREPISLHTPLG 287
>gi|28572422|ref|NP_789202.1| RNA polymerase sigma factor [Tropheryma whipplei TW08/27]
gi|28410553|emb|CAD66939.1| RNA polymerase principal sigma factor hrdb [Tropheryma whipplei
TW08/27]
Length = 387
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 126/214 (58%), Gaps = 15/214 (7%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP++ YL+ S LLTA+EE+ L+ I+ L E E LSE +P
Sbjct: 88 ADPVKDYLKQIGKVS-LLTADEEVSLAKRIEAGLFAE---EKLSESGDLAPKL------- 136
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
+RELR + G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EK
Sbjct: 137 ---KRELRWVVRDGQRAKDHLLAANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIRAVEK 193
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
FD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P
Sbjct: 194 FDYVKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLSRVQRQLLQDLGREP 253
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
+E+ + +R+ V + P SL +G
Sbjct: 254 TPDELGRELDMPPERVVEVQKYGREPISLHTPLG 287
>gi|311739612|ref|ZP_07713447.1| RNA polymerase principal sigma factor SigB [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311305428|gb|EFQ81496.1| RNA polymerase principal sigma factor SigB [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 337
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 107/164 (65%), Gaps = 1/164 (0%)
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
++R+L+ G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 86 EKRDLKILAREGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFD 145
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ ++++Y GR N
Sbjct: 146 YAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQSLGREATN 205
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
EE++E +G+ ++ +L + P SLD +G ++ P FI
Sbjct: 206 EELSEESGIDENKIEMLLRQSRDPVSLDMPVGTDEE-APLGDFI 248
>gi|440680152|ref|YP_007154947.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428677271|gb|AFZ56037.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 377
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 143/232 (61%), Gaps = 1/232 (0%)
Query: 193 KSGSTSRRKRPS-VQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREV 251
++G RPS + ++ D + + LL A+EE++L+ ++ L +++ L+
Sbjct: 45 RNGDDMAAARPSGYNKTEHDDAVGAFFKEMARYPLLKADEEVELARRVRFLEEVKDLQAA 104
Query: 252 LSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMN 311
L G P+ + A+ + +++L RL G + K KMI SN+RLV+SIAK Y G+
Sbjct: 105 LELELGQQPSKNEVASKFEMTEKQLESRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVP 164
Query: 312 LQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEAT 371
DL+QEG GL R EKFD KG+KFSTYA+WWI+QA+ +++++ +RTIRLP H+VE
Sbjct: 165 FLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQAITRAIANDARTIRLPIHIVEKL 224
Query: 372 YRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
++K+A+++L + R+P+ E+AE+ +S+++L + + SL+ ++G
Sbjct: 225 NKLKKAQRELKQKLARNPSEAEMAESLEISVQQLRQLQQLRRQALSLNHRVG 276
>gi|187736115|ref|YP_001878227.1| RpoD family RNA polymerase sigma-70 subunit [Akkermansia
muciniphila ATCC BAA-835]
gi|187426167|gb|ACD05446.1| RNA polymerase, sigma 70 subunit, RpoD family [Akkermansia
muciniphila ATCC BAA-835]
Length = 688
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 105/161 (65%), Gaps = 2/161 (1%)
Query: 265 WAAA--AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 322
W A G +ELR+ L KD+M+ +N+RLVISIAK Y G++ DL+QEG G
Sbjct: 424 WMTADEMGDAYQELRKWLREARRAKDEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMG 483
Query: 323 LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLY 382
L++ EKF+ +G+KFSTYA WWI+QA+ +S++DQ+RTIR+P HM+E ++ +KQL
Sbjct: 484 LMKAVEKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLMRVQKQLV 543
Query: 383 SENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
E GR P EE+AE L ++R+ +VL + P SL +G
Sbjct: 544 QEYGREPTPEEIAEEIHLPVERVRSVLKMAQQPISLQAPVG 584
>gi|255325135|ref|ZP_05366241.1| RNA polymerase sigma factor RpoD [Corynebacterium
tuberculostearicum SK141]
gi|255297700|gb|EET77011.1| RNA polymerase sigma factor RpoD [Corynebacterium
tuberculostearicum SK141]
Length = 365
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 107/164 (65%), Gaps = 1/164 (0%)
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
++R+L+ G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 114 EKRDLKILAREGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFD 173
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ ++++Y GR N
Sbjct: 174 YAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQSLGREATN 233
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
EE++E +G+ ++ +L + P SLD +G ++ P FI
Sbjct: 234 EELSEESGIDENKIEMLLRQSRDPVSLDMPVGTDEE-APLGDFI 276
>gi|427412602|ref|ZP_18902794.1| RNA polymerase sigma factor RpoD [Veillonella ratti
ACS-216-V-Col6b]
gi|425716409|gb|EKU79393.1| RNA polymerase sigma factor RpoD [Veillonella ratti
ACS-216-V-Col6b]
Length = 394
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 121/216 (56%), Gaps = 28/216 (12%)
Query: 208 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
V+ DP+R LL+A+EE+ L+ I+ G+ A +
Sbjct: 108 VNIDDPVRMYLKEIGRVPLLSADEEILLAQQIE----------------AGAKDDASY-- 149
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
+ + G K K+I +N+RLV+SIAK Y G GM DL+QEG GL++
Sbjct: 150 ----------KEMKAGEKAKQKLIDANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAV 199
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
+KFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL + GR
Sbjct: 200 DKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRISRQLLQDKGR 259
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
P EE+AE G+S++R+ + + P SL+ IG
Sbjct: 260 EPLPEEIAEGMGISVERVREIQKIAQEPVSLETPIG 295
>gi|317968274|ref|ZP_07969664.1| putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. CB0205]
Length = 382
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 115/165 (69%), Gaps = 4/165 (2%)
Query: 265 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV 324
WA + + EL++ L+ G +D+MI +N+RLV+++AK YQ GM L DLVQEG GL
Sbjct: 115 WATLSELSIAELKQALHQGRRARDRMIQANLRLVVAVAKKYQQRGMELLDLVQEGTLGLE 174
Query: 325 RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSE 384
R EK+D ++GF+FSTYA+WWI+Q + ++++ QSRTIRLP H+ E R+K+A++Q+ SE
Sbjct: 175 RAVEKYDPTRGFRFSTYAYWWIRQGITRAIATQSRTIRLPVHVTEKLNRIKKAQRQIASE 234
Query: 385 NGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR--SLDQKIGINQN 427
+GR + ++A+ GLS + + L+ + PR SLD ++G +Q+
Sbjct: 235 HGRLASVADLAKELGLSEEVIRLTLM--RVPRSVSLDTRVGRDQD 277
>gi|4218586|emb|CAA10725.1| chloroplast sigma factor [Triticum aestivum]
Length = 461
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 82/206 (39%), Positives = 122/206 (59%), Gaps = 2/206 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR T S LLT + + LS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 149 YLRGTVSKE-LLTQKQVVHLSKKIKDGIWLQQQRSKLKEKLGNEPSYKQMAQSLRISTPE 207
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 335
LR R+ L ++ + SNIRLVISIA+ Y G+ L DL+Q G GL+RG EKFDAS+G
Sbjct: 208 LRSRMRESFLAREVLTMSNIRLVISIAQKYDKLGVELSDLIQGGLIGLLRGIEKFDASRG 267
Query: 336 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVA 395
F+ STY +WWI+Q V ++L+D S+T RLP ++ E ++ A+ L + G P + +A
Sbjct: 268 FRISTYVYWWIRQGVSRALADNSKTFRLPTYLHERLIAIRGAKYAL-EDQGVSPTTQNIA 326
Query: 396 EATGLSMKRLHAVLLSPKAPRSLDQK 421
+ +S K++H + SLDQ+
Sbjct: 327 KLLNISEKKVHNATEAVNKALSLDQQ 352
>gi|385682350|ref|ZP_10056278.1| RNA polymerase sigma factor SigB [Amycolatopsis sp. ATCC 39116]
Length = 341
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 109/163 (66%), Gaps = 1/163 (0%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
++EL + G K+ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 91 RKELEALVRDGHKAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDY 150
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
SKGFKFSTYA WWI+QA+ + ++DQ RTIRLP H+VE ++ ++ L+ + GR NE
Sbjct: 151 SKGFKFSTYATWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQQLGREATNE 210
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
E+A +G++++++ +L + P SLD +G +++ P FI
Sbjct: 211 ELAAESGIAVEKVADLLDHARDPVSLDMPVGTDED-APLGDFI 252
>gi|440682434|ref|YP_007157229.1| RNA polymerase, sigma subunit, RpsC/SigC [Anabaena cylindrica PCC
7122]
gi|428679553|gb|AFZ58319.1| RNA polymerase, sigma subunit, RpsC/SigC [Anabaena cylindrica PCC
7122]
Length = 416
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 134/237 (56%), Gaps = 31/237 (13%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 274
RYLR R++ AN Q I +L ++E LS G P+ +WA AG++
Sbjct: 89 RYLRL-----RIVLANAAKQGDEVIVPYQRLIEVQERLSSELGHRPSLERWATTAGIELS 143
Query: 275 ELRRRLN----------------------YGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
L+ L+ G+ K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 144 NLKPTLSEGKRRWAEIAELTVLELEKIQSQGLQAKEHMIKANLRLVVSVAKKYQNRGLEL 203
Query: 313 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY 372
DLVQEG GL R EKFD +KG++FSTYA+WWI+Q + ++++ SRTIRLP H+ E
Sbjct: 204 LDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLN 263
Query: 373 RVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR--SLDQKIGINQN 427
++K+A++++ E GR P E++A ++ ++ VLL + PR SL+ K+G +++
Sbjct: 264 KIKKAQRKIAQEKGRTPTLEDLAIELDMTPTQVREVLL--RVPRSVSLETKVGKDKD 318
>gi|392400748|ref|YP_006437348.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis Cp162]
gi|390531826|gb|AFM07555.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis Cp162]
Length = 329
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 106/163 (65%), Gaps = 1/163 (0%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L+ + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 79 KRDLKVLVKDGRKARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 138
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
S GFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ ++++Y GR NE
Sbjct: 139 SMGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQHLGREATNE 198
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
E+AE +G+ ++ +L + P SLD +G ++ P FI
Sbjct: 199 ELAEESGIDESKIEILLRQSRDPVSLDMPVGADEE-APLGDFI 240
>gi|336325738|ref|YP_004605704.1| RNA polymerase sigma factor B [Corynebacterium resistens DSM 45100]
gi|336101720|gb|AEI09540.1| RNA polymerase sigma factor B [Corynebacterium resistens DSM 45100]
Length = 337
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 138/265 (52%), Gaps = 38/265 (14%)
Query: 171 QTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTAN 230
QTE K RR E +A+++ V YL ++ LLTA
Sbjct: 22 QTEDKGRRRGNNENPSADLVRV-----------------------YLNGIGKTA-LLTAE 57
Query: 231 EEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKM 290
+E++LS I+ L E L +R+L+ G + +
Sbjct: 58 DEVELSQRIEVGLYAEHL-------------LKNSTDLTRARKRDLKILAREGKAARSHL 104
Query: 291 ITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAV 350
+ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+
Sbjct: 105 LEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQAI 164
Query: 351 RKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 410
+ ++DQSRTIRLP H+VE ++ ++++Y GR NEE+AE +G+ ++ +L
Sbjct: 165 TRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQHLGREATNEELAEESGIEESKIELLLK 224
Query: 411 SPKAPRSLDQKIGINQNLKPSVCFI 435
+ P SLD +G ++ P FI
Sbjct: 225 QSRDPVSLDMPVGSDEE-APLGDFI 248
>gi|434404640|ref|YP_007147525.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428258895|gb|AFZ24845.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 377
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 130/198 (65%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL +EE++L+ ++ L +++ L+E LS G + Q A + +++L RL G +
Sbjct: 79 LLKPDEEVELARRVRFLEEIKDLQESLSTELGQPASKLQVANQLEMTEKQLESRLYQGRV 138
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R EKFD KG+KFSTYA+WW
Sbjct: 139 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 198
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +++++ +RTIRLP H+VE ++K+A+++L + R+P+ E+AEA +++++L
Sbjct: 199 IRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLSRNPSEAEMAEALEITVQQL 258
Query: 406 HAVLLSPKAPRSLDQKIG 423
+ + SL+ ++G
Sbjct: 259 RQLQQLRRQALSLNHRVG 276
>gi|433603602|ref|YP_007035971.1| RNA polymerase sigma factor SigB [Saccharothrix espanaensis DSM
44229]
gi|407881455|emb|CCH29098.1| RNA polymerase sigma factor SigB [Saccharothrix espanaensis DSM
44229]
Length = 330
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 131/225 (58%), Gaps = 14/225 (6%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+D +R + LLTA EE++L+ I+ + + + E G P A
Sbjct: 31 ADLVRVYLNGIGKTALLTAAEEVELAKRIEAGVFAQHMLE-----TGSGP--------AS 77
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
+ ELR + G + K+ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKF
Sbjct: 78 TRREELRALVRDGHVAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKF 137
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KGFKFSTYA WWI+QA+ + ++DQ RTIRLP H+VE ++ ++ L+ + GR
Sbjct: 138 DYTKGFKFSTYATWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQQLGREAT 197
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
+E+A+ +GL+ ++ +L + P SLD +G ++ P FI
Sbjct: 198 TDELAKESGLTPAKVSDLLDHARDPVSLDMPVGAEED-APLGDFI 241
>gi|159899067|ref|YP_001545314.1| RpoD family RNA polymerase sigma factor [Herpetosiphon aurantiacus
DSM 785]
gi|159892106|gb|ABX05186.1| RNA polymerase, sigma 70 subunit, RpoD family [Herpetosiphon
aurantiacus DSM 785]
Length = 386
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 85/228 (37%), Positives = 125/228 (54%), Gaps = 26/228 (11%)
Query: 203 PSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQ-------DLLKLEGLREVLSER 255
P + ++ DP+R LLTA EE+ L+ ++ LL+ +G+ E
Sbjct: 78 PDLSDIALDDPVRMYLQEIGQVPLLTAAEEVDLAKKMEVAHAANDTLLQDDGMLE----- 132
Query: 256 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 315
D+ L+R ++ G + +I +N+RLV+SIAK Y G+ + DL
Sbjct: 133 --------------HSDRISLKRHIDTGRAARQHLIQANLRLVVSIAKKYTSYGLTMMDL 178
Query: 316 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVK 375
VQEG GL+R EKFD +KG KFSTYA WWI+QA+ ++++DQSRTIRLP HM EA +VK
Sbjct: 179 VQEGNIGLMRAVEKFDYTKGHKFSTYATWWIRQAITRAIADQSRTIRLPVHMGEAISQVK 238
Query: 376 EARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
+L R P EE+AEA G++ ++ L + P SL+ +G
Sbjct: 239 RTSHKLQQTMQREPTPEEIAEAMGITASKVRRTLEASMHPLSLEMPVG 286
>gi|18477825|emb|CAC83730.1| sigma factor [Rhodococcus fascians D188]
Length = 323
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/248 (36%), Positives = 142/248 (57%), Gaps = 22/248 (8%)
Query: 194 SGSTSRRKRPSVQEVDYSDP----LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGL- 248
S ST+ R RP+ ++D P +R + LLTA EE+ L+ I+ GL
Sbjct: 3 SPSTTIRPRPTDADLDAQSPAADLVRVYLNGIGRTALLTAEEEVDLAKRIE-----AGLY 57
Query: 249 -REVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQG 307
++VL + V +R L + G + ++ +N+RLV+S+AK Y G
Sbjct: 58 AKQVLE----------NTKRLSAVKKRNLAIIVRDGSAARSHLLEANLRLVVSLAKRYTG 107
Query: 308 AGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHM 367
GM L DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+
Sbjct: 108 RGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHL 167
Query: 368 VEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
VE ++ +++L+ + GR +EE++ +G++++++ +L + P SLD +G ++
Sbjct: 168 VEQVNKLARIKRELHQQLGREATDEELSSESGIAVEKIADLLDHSRDPVSLDMPVGSDEE 227
Query: 428 LKPSVCFI 435
P FI
Sbjct: 228 -APLGDFI 234
>gi|68536171|ref|YP_250876.1| RNA polymerase sigma factor SigB [Corynebacterium jeikeium K411]
gi|260578869|ref|ZP_05846775.1| RNA polymerase principal sigma factor SigB [Corynebacterium
jeikeium ATCC 43734]
gi|68263770|emb|CAI37258.1| RNA polymerase sigma factor B [Corynebacterium jeikeium K411]
gi|258603016|gb|EEW16287.1| RNA polymerase principal sigma factor SigB [Corynebacterium
jeikeium ATCC 43734]
Length = 343
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 123/210 (58%), Gaps = 14/210 (6%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA +E++LS I+ L E L + +R+L+ G
Sbjct: 59 LLTAEDEVELSKRIEVGLYSEYL-------------LSNAEKLTRAKKRDLKVLAREGKA 105
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
+ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD +KGFKFSTYA WW
Sbjct: 106 ARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYATWW 165
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ + ++DQSRTIRLP H+VE ++ ++++Y + GR NEE++E +G+ ++
Sbjct: 166 IRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQQLGREATNEELSEESGIEESKI 225
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
+L + P SLD +G ++ P FI
Sbjct: 226 EMLLKQSRDPVSLDMPVGSDEE-APLGDFI 254
>gi|227503471|ref|ZP_03933520.1| RNA polymerase sigma factor SigB [Corynebacterium accolens ATCC
49725]
gi|306836281|ref|ZP_07469263.1| RNA polymerase principal sigma factor SigB [Corynebacterium
accolens ATCC 49726]
gi|227075974|gb|EEI13937.1| RNA polymerase sigma factor SigB [Corynebacterium accolens ATCC
49725]
gi|304567873|gb|EFM43456.1| RNA polymerase principal sigma factor SigB [Corynebacterium
accolens ATCC 49726]
Length = 337
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 107/164 (65%), Gaps = 1/164 (0%)
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
++R+L+ G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 86 EKRDLKILAREGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFD 145
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ ++++Y GR N
Sbjct: 146 YAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQSLGREATN 205
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
EE++E +G+ ++ +L + P SLD +G ++ P FI
Sbjct: 206 EELSEESGIDENKIEMLLRQSRDPVSLDMPVGTDEE-APLGDFI 248
>gi|441521275|ref|ZP_21002936.1| RNA polymerase sigma factor SigB [Gordonia sihwensis NBRC 108236]
gi|441459107|dbj|GAC60897.1| RNA polymerase sigma factor SigB [Gordonia sihwensis NBRC 108236]
Length = 332
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 146/264 (55%), Gaps = 36/264 (13%)
Query: 186 AANVMSVKSGSTSRRKRPSVQEVDY------SDPLRYLRATTSSSRLLTANEEMQLSAGI 239
A + ++ S + S R RP++ E D +D +R + LLTA +E+ LS I
Sbjct: 2 AHSTIARPSEARSTRTRPALTEQDLDAQSPSADLVRVYLNGIGRTALLTAEQEVDLSKAI 61
Query: 240 QDLLKLEGL--REVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKD------KMI 291
+ GL + +L+ + SP ++ +Y IL ++ ++
Sbjct: 62 E-----AGLYAKHLLATKKRLSPA----------------KKRDYAILVREGEQARAHLL 100
Query: 292 TSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVR 351
+N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA+
Sbjct: 101 EANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYAKGYKFSTYATWWIRQAIS 160
Query: 352 KSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLS 411
+ ++DQSRTIRLP H+VE ++ R++L+ + GR +EE+A +G+ +++ ++
Sbjct: 161 RGMADQSRTIRLPVHLVEQVNKLARIRRELHQQLGREATDEELALESGIPAEKIADLMDH 220
Query: 412 PKAPRSLDQKIGINQNLKPSVCFI 435
+ P SLD +G N P FI
Sbjct: 221 SRDPVSLDMPVG-NDEEAPLGDFI 243
>gi|343924630|ref|ZP_08764174.1| RNA polymerase sigma factor SigA [Gordonia alkanivorans NBRC 16433]
gi|343765430|dbj|GAA11100.1| RNA polymerase sigma factor SigA [Gordonia alkanivorans NBRC 16433]
Length = 470
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/251 (35%), Positives = 139/251 (55%), Gaps = 19/251 (7%)
Query: 178 RTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSA 237
+T AA K+ V + R+ R + +D +R LL A EE++L+
Sbjct: 134 KTDAAAKSGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 193
Query: 238 GIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKDKMIT 292
I+ L E LR ++ G + AQ +R LN+ G K+ ++
Sbjct: 194 RIEAGLFATERLRRMMD--SGEKISTAQ------------KRDLNWISRDGNRAKNHLLE 239
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 352
+N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA+ +
Sbjct: 240 ANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITR 299
Query: 353 SLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSP 412
+++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++ +
Sbjct: 300 AMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYA 359
Query: 413 KAPRSLDQKIG 423
+ P SLDQ IG
Sbjct: 360 REPISLDQTIG 370
>gi|406980685|gb|EKE02255.1| hypothetical protein ACD_20C00407G0008 [uncultured bacterium]
Length = 364
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 127/218 (58%), Gaps = 39/218 (17%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
DP+R YLR +LLTA+EE++L+ R+++S GG
Sbjct: 88 DDPVRMYLREI-GRIQLLTADEEIELA------------RKIVS---GGKE--------- 122
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
G + K K++ +N+RLV+SIAK Y G GM DL+QEG GL+R AEK
Sbjct: 123 -------------GQIAKRKLVQANLRLVVSIAKKYVGRGMLFLDLIQEGNLGLIRAAEK 169
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
FD +G+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++K+ ++L + R P
Sbjct: 170 FDHERGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLKKITRKLAQDLSRKP 229
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
EE+AEA +++ +L ++ + P SL+ IG ++
Sbjct: 230 TEEEIAEAMAITINKLREIIKVAQEPLSLETPIGKEED 267
>gi|443317305|ref|ZP_21046719.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783066|gb|ELR92992.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 392
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 126/202 (62%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL +EE++L+ ++ L ++E L+ L++ G P A A A + + ++R+ L G
Sbjct: 94 LLKPDEEIELARQVRFLGEMEELKASLTDSLGRRPLLADIAHAFDLSEAQVRQNLQLGRA 153
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K +MI SN+RLV+SIAK Y G+ DL+QEG GL R EKFD KG+KFSTYA+WW
Sbjct: 154 AKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRATEKFDPDKGYKFSTYAYWW 213
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q + +++++ +RTIRLP H+VE ++K+A + L E R+P E+A++ ++ +L
Sbjct: 214 IRQGITRTIANDARTIRLPIHIVEKLNKLKKAHRDLRRELQRNPTEVELAQSLDMTPDQL 273
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
+ + SL+ ++G ++
Sbjct: 274 RGLQQVRRRSLSLNHRVGKGED 295
>gi|379736693|ref|YP_005330199.1| RNA polymerase sigma factor rpoD [Blastococcus saxobsidens DD2]
gi|378784500|emb|CCG04169.1| RNA polymerase sigma factor rpoD [Blastococcus saxobsidens DD2]
Length = 450
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 82/203 (40%), Positives = 122/203 (60%), Gaps = 19/203 (9%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 282
LL A EE+ L+ I+ L E LR+V E SP ++RR LN+
Sbjct: 162 LLNAEEEVDLAKRIEAGLYGSERLRQVEEEGQKISP--------------QMRRDLNWIV 207
Query: 283 --GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 340
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFST
Sbjct: 208 RDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 267
Query: 341 YAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGL 400
YA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ +
Sbjct: 268 YATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDI 327
Query: 401 SMKRLHAVLLSPKAPRSLDQKIG 423
+ ++ + + P SLDQ IG
Sbjct: 328 TPDKVLEIQQYAREPISLDQTIG 350
>gi|222100016|ref|YP_002534584.1| RNA polymerase sigma factor rpoD [Thermotoga neapolitana DSM 4359]
gi|221572406|gb|ACM23218.1| RNA polymerase sigma factor rpoD [Thermotoga neapolitana DSM 4359]
Length = 392
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 108/156 (69%), Gaps = 1/156 (0%)
Query: 273 QRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+REL RR G K+K+ITSN+RLV+SIAK Y G G++ QDL+QEG GL++ EKFD
Sbjct: 134 ERELARRAQMGDKKAKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLLKAVEKFD 193
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ R++ Y + G P+
Sbjct: 194 WRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLNRLRREYYQKYGEEPSV 253
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
EE+A+ G +++ +L + K SL+ IG +++
Sbjct: 254 EELAKMMGKPPEKIKEILEAAKETISLESPIGEDED 289
>gi|282900303|ref|ZP_06308254.1| Sigma 28 (Flagella/Sporulation) [Cylindrospermopsis raciborskii
CS-505]
gi|281194808|gb|EFA69754.1| Sigma 28 (Flagella/Sporulation) [Cylindrospermopsis raciborskii
CS-505]
Length = 399
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 132/198 (66%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL +EE++L+ ++ L +++ L+ L E+ G S + ++ A+ +++++L RL G +
Sbjct: 101 LLKPDEEVELARRVRFLEEVKDLQAALEEQLGHSVSKSEVASKFDLNEKQLESRLYQGRV 160
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R EKFD KG+KFSTYA+WW
Sbjct: 161 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 220
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +++++ +RTIRLP H+VE ++K+A+++L + R+P E+AE +++++L
Sbjct: 221 IRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKFARNPTEVEMAEFLEMTVQQL 280
Query: 406 HAVLLSPKAPRSLDQKIG 423
+ + SL+ ++G
Sbjct: 281 RQLQQLRRQALSLNHRVG 298
>gi|219130701|ref|XP_002185497.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403028|gb|EEC42984.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 329
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 126/222 (56%), Gaps = 8/222 (3%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R T + LL NEE+ L +Q L++ E RE L PT+ +WA
Sbjct: 1 DSIRSYIKTMCNHELLNKNEEIILGREVQVLIQYEATREQLEAELLRPPTYQEWATKIQP 60
Query: 272 DQR--ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
D +L++++ + K + SNIRLV+SIAK YQ G++ QDL QEG GL R EK
Sbjct: 61 DMMVPDLKKQIRRSLRAKAALTESNIRLVVSIAKRYQHRGLSFQDLAQEGILGLTRACEK 120
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
FD +GF+FSTYA WWIKQ++ ++++DQ RTIRLP H+ + +++ ++L +E GR
Sbjct: 121 FDPERGFRFSTYASWWIKQSIMRAIADQGRTIRLPVHIHDQINALRKVERELKAELGRDA 180
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPS 431
EE+ E + L+ +++ + R Q + + Q L+ S
Sbjct: 181 RLEEITEKSTLTAEKIEFL------NRVSQQDVSMEQELRTS 216
>gi|409390110|ref|ZP_11241881.1| RNA polymerase sigma factor SigA [Gordonia rubripertincta NBRC
101908]
gi|403199937|dbj|GAB85115.1| RNA polymerase sigma factor SigA [Gordonia rubripertincta NBRC
101908]
Length = 515
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 89/255 (34%), Positives = 142/255 (55%), Gaps = 19/255 (7%)
Query: 174 RKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEM 233
+++ +T AA K+ V + R+ R + +D +R LL A EE+
Sbjct: 175 KESSKTDAAAKSGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEV 234
Query: 234 QLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKD 288
+L+ I+ L E LR ++ G + AQ +R LN+ G K+
Sbjct: 235 ELAKRIEAGLFATERLRRMMD--SGEKISTAQ------------KRDLNWISRDGNRAKN 280
Query: 289 KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ 348
++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+Q
Sbjct: 281 HLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQ 340
Query: 349 AVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAV 408
A+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++ +
Sbjct: 341 AITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEI 400
Query: 409 LLSPKAPRSLDQKIG 423
+ P SLDQ IG
Sbjct: 401 QQYAREPISLDQTIG 415
>gi|444432019|ref|ZP_21227179.1| RNA polymerase sigma factor SigA [Gordonia soli NBRC 108243]
gi|443887193|dbj|GAC68900.1| RNA polymerase sigma factor SigA [Gordonia soli NBRC 108243]
Length = 479
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 90/249 (36%), Positives = 140/249 (56%), Gaps = 20/249 (8%)
Query: 181 AAEKAAAN-VMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGI 239
AA+KA+ + V + R+ R + +D +R LL A EE++L+ I
Sbjct: 145 AADKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRI 204
Query: 240 Q-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKDKMITSN 294
+ L E LR ++ G T AQ +R LN+ G K+ ++ +N
Sbjct: 205 EAGLFATERLRRMVD--AGEKITTAQ------------KRDLNWISRDGNRAKNHLLEAN 250
Query: 295 IRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSL 354
+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA+ +++
Sbjct: 251 LRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAM 310
Query: 355 SDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKA 414
+DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++ + +
Sbjct: 311 ADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYARE 370
Query: 415 PRSLDQKIG 423
P SLDQ IG
Sbjct: 371 PISLDQTIG 379
>gi|357144851|ref|XP_003573435.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 531
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 118/191 (61%), Gaps = 2/191 (1%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR + S LLT + +QLS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 219 YLRGSVSKE-LLTHKQVVQLSKKIKDGIWLQQQRSKLKEKLGNEPSYKQMAQSLRISTPE 277
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 335
LR R+ L ++ + SN+RLVISIA+ Y G+ L DL+Q G GL+RG EKFDAS+G
Sbjct: 278 LRSRMRDSFLAREVLTMSNLRLVISIAQKYDKLGVELPDLIQGGLIGLLRGIEKFDASRG 337
Query: 336 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVA 395
F+ STY +WWI+Q V ++L+D S+T RLP ++ E ++ A+ L + G P E +A
Sbjct: 338 FRISTYVYWWIRQGVSRALADNSKTFRLPTYLHERLIAIRGAKYAL-EDQGISPTTENIA 396
Query: 396 EATGLSMKRLH 406
E+ +S K++H
Sbjct: 397 ESLNISEKKVH 407
>gi|2564653|gb|AAC45358.1| group 2 alternative sigma factor [Nostoc punctiforme PCC 73102]
Length = 321
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 123/204 (60%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ + +Q L+ + E L+ +PT ++WA + ++EL ++LN G
Sbjct: 34 LLTQEQEIIFAQEVQQLMTILAESEKLTIELKRTPTLSEWANQMQLSEQELLQQLNQGKK 93
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMIT+N+RLV+SIAK YQ + L DL+QEG GL RG EKF+ + G++ +TYA+WW
Sbjct: 94 AKHKMITANLRLVVSIAKQYQRRNLELMDLIQEGTLGLERGVEKFNPALGYRKTTYAYWW 153
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q + ++++ Q R IRLP H+ E ++K +++L GR P + E+A A L ++
Sbjct: 154 IRQGITRAIAQQGRAIRLPIHINEKLNKIKRVQRELSQTLGRIPTSTEIANALSLKPSQI 213
Query: 406 HAVLLSPKAPRSLDQKIGINQNLK 429
LL SLD ++ ++L+
Sbjct: 214 REFLLLATRTISLDIRVSSAKDLR 237
>gi|291531112|emb|CBK96697.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Eubacterium siraeum 70/3]
Length = 358
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 66/138 (47%), Positives = 96/138 (69%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
+ ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +KG+KFSTYA WW
Sbjct: 121 ARKRLSEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDYTKGYKFSTYATWW 180
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +S++DQ+RTIR+P HMVE +VK+ QL ENG P +E+A+ G+++ R+
Sbjct: 181 IRQAITRSIADQARTIRIPVHMVETITKVKKVSSQLLHENGHEPTPQEIADRLGITVDRV 240
Query: 406 HAVLLSPKAPRSLDQKIG 423
+L + P SL+ IG
Sbjct: 241 REILRISQDPVSLETPIG 258
>gi|404258479|ref|ZP_10961798.1| RNA polymerase sigma factor SigA [Gordonia namibiensis NBRC 108229]
gi|403402993|dbj|GAC00208.1| RNA polymerase sigma factor SigA [Gordonia namibiensis NBRC 108229]
Length = 475
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 89/251 (35%), Positives = 140/251 (55%), Gaps = 19/251 (7%)
Query: 178 RTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSA 237
+T AA K+ V + R+ R + +D +R LL A EE++L+
Sbjct: 139 KTDAAAKSGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 198
Query: 238 GIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKDKMIT 292
I+ L E LR +++ G + AQ +R LN+ G K+ ++
Sbjct: 199 RIEAGLFATERLRRMMA--SGEKISTAQ------------KRDLNWISRDGNRAKNHLLE 244
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 352
+N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA+ +
Sbjct: 245 ANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITR 304
Query: 353 SLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSP 412
+++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++ +
Sbjct: 305 AMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYA 364
Query: 413 KAPRSLDQKIG 423
+ P SLDQ IG
Sbjct: 365 REPISLDQTIG 375
>gi|266623970|ref|ZP_06116905.1| RNA polymerase sigma factor RpoD [Clostridium hathewayi DSM 13479]
gi|288864209|gb|EFC96507.1| RNA polymerase sigma factor RpoD [Clostridium hathewayi DSM 13479]
Length = 345
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 71/153 (46%), Positives = 103/153 (67%), Gaps = 1/153 (0%)
Query: 272 DQRELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
D+ EL +++ G L K+K+ +N+RLV+SIAK Y G GM DL+QEG GL++ EKF
Sbjct: 92 DEIELAKKIELGDELAKEKLTEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKF 151
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE R+ +QL E GR P+
Sbjct: 152 DYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINRLVRVSRQLLQELGREPS 211
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
EEVA + ++R+ ++ + P SL+ IG
Sbjct: 212 PEEVASRVDMPVERVREIMKVSQEPVSLETPIG 244
>gi|295839080|ref|ZP_06826013.1| RNA polymerase sigma (70) factor RpoD [Streptomyces sp. SPB74]
gi|295827312|gb|EDY44634.2| RNA polymerase sigma (70) factor RpoD [Streptomyces sp. SPB74]
Length = 360
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 105/163 (64%), Gaps = 3/163 (1%)
Query: 264 QWAAAAGVDQR---ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGC 320
+ A +D R +L R + G K ++I SN+RLV+S+AK Y G G+ + DLVQEG
Sbjct: 98 KLAGPGPLDTRLALDLDRLVVLGRAAKRRLIESNLRLVVSVAKRYAGRGLTMLDLVQEGN 157
Query: 321 RGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQ 380
GL+R EKFD ++GFKFSTYA WWI+QA+ ++L+DQ+RTIR+P H+VE RV AR+
Sbjct: 158 LGLIRAVEKFDYTRGFKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRARRT 217
Query: 381 LYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
L E G P + EVA GL+ +R+ VL + P SL +G
Sbjct: 218 LLQERGHEPCDAEVAAVLGLTPERVGEVLRLAQEPVSLHTPVG 260
>gi|441518669|ref|ZP_21000384.1| RNA polymerase sigma factor SigA [Gordonia hirsuta DSM 44140 = NBRC
16056]
gi|441454483|dbj|GAC58345.1| RNA polymerase sigma factor SigA [Gordonia hirsuta DSM 44140 = NBRC
16056]
Length = 489
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 82/203 (40%), Positives = 123/203 (60%), Gaps = 19/203 (9%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 282
LL A EE++L+ I+ L E LR V+ G + AQ RR LN+
Sbjct: 201 LLNAEEEVELAKRIEAGLFATERLRRVME--AGEKLSVAQ------------RRDLNWIS 246
Query: 283 --GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 340
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFST
Sbjct: 247 RDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 306
Query: 341 YAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGL 400
YA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ +
Sbjct: 307 YATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDI 366
Query: 401 SMKRLHAVLLSPKAPRSLDQKIG 423
+ +++ + + P SLDQ IG
Sbjct: 367 TPEKVLEIQQYAREPISLDQTIG 389
>gi|167750934|ref|ZP_02423061.1| hypothetical protein EUBSIR_01919 [Eubacterium siraeum DSM 15702]
gi|167656113|gb|EDS00243.1| RNA polymerase sigma factor RpoD [Eubacterium siraeum DSM 15702]
gi|291557421|emb|CBL34538.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Eubacterium siraeum
V10Sc8a]
Length = 358
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 66/138 (47%), Positives = 96/138 (69%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
+ ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +KG+KFSTYA WW
Sbjct: 121 ARKRLSEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDYTKGYKFSTYATWW 180
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +S++DQ+RTIR+P HMVE +VK+ QL ENG P +E+A+ G+++ R+
Sbjct: 181 IRQAITRSIADQARTIRIPVHMVETITKVKKVSSQLLHENGHEPTPQEIADRLGITVDRV 240
Query: 406 HAVLLSPKAPRSLDQKIG 423
+L + P SL+ IG
Sbjct: 241 REILRISQDPVSLETPIG 258
>gi|39840783|emb|CAD20832.1| sigma factor [Spinacia oleracea]
Length = 548
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 134/209 (64%)
Query: 225 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 284
R + A E ++S GI+ + +LE ++ L + G + + WA AAG+D++ L+ L++G
Sbjct: 250 RAIIAKNEAEMSRGIKVVAQLEKVKLTLEKETGKAVSLNCWAEAAGIDEKVLQHDLHFGW 309
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
C+D+++ S LV+ +++ Y+G G+ +DL+Q G G+++GAE+FD ++G++FSTY +
Sbjct: 310 YCRDELLKSGRSLVLYLSRYYRGLGVAHEDLMQAGNIGILQGAERFDHTRGYQFSTYVQY 369
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI++A+ + +S R I++P + RV++ARK L G+HP++ EV+++TGLS+ +
Sbjct: 370 WIRKAMSQLVSRHGRGIKVPTTLSTTINRVQKARKILKRSQGKHPDDVEVSKSTGLSLDK 429
Query: 405 LHAVLLSPKAPRSLDQKIGINQNLKPSVC 433
+ + + SLDQK+G N+K C
Sbjct: 430 IKSADNCLRIVGSLDQKVGHFINMKYLEC 458
>gi|357021635|ref|ZP_09083866.1| RNA polymerase sigma factor SigB [Mycobacterium thermoresistibile
ATCC 19527]
gi|356479383|gb|EHI12520.1| RNA polymerase sigma factor SigB [Mycobacterium thermoresistibile
ATCC 19527]
Length = 319
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 109/163 (66%), Gaps = 1/163 (0%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 69 KRDLEAIVRDGEEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 128
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++L+ GR P +E
Sbjct: 129 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQTLGREPTDE 188
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
E+AE +G+ ++++ +L + P SLD +G ++ P FI
Sbjct: 189 ELAEESGIPVEKIADLLDHSRDPVSLDMPVGSDEE-APLGDFI 230
>gi|324997280|ref|ZP_08118392.1| RNA polymerase sigma factor [Pseudonocardia sp. P1]
Length = 469
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 88/252 (34%), Positives = 143/252 (56%), Gaps = 12/252 (4%)
Query: 174 RKARRTRAAEKAAAN-VMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEE 232
R A TR++++ +A+ V + R+ R + +D +R LL A EE
Sbjct: 128 RVAPTTRSSQQKSADFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEE 187
Query: 233 MQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMI 291
++L+ I+ L E +R++ SP +R+LR + G K+ ++
Sbjct: 188 VELAKRIEAGLYGAERIRKLFESNDKLSPQM----------RRDLRWIVRDGERAKNHLL 237
Query: 292 TSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVR 351
+N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA+
Sbjct: 238 EANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAIT 297
Query: 352 KSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLS 411
++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++ +
Sbjct: 298 RAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQY 357
Query: 412 PKAPRSLDQKIG 423
+ P SLDQ IG
Sbjct: 358 AREPISLDQTIG 369
>gi|451944386|ref|YP_007465022.1| RNA polymerase sigma factor SigB [Corynebacterium halotolerans YIM
70093 = DSM 44683]
gi|451903773|gb|AGF72660.1| RNA polymerase sigma factor SigB [Corynebacterium halotolerans YIM
70093 = DSM 44683]
Length = 329
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 106/163 (65%), Gaps = 1/163 (0%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L+ G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 79 KRDLKVLAKEGNKARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 138
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++LY GR NE
Sbjct: 139 AKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKRELYQHLGREATNE 198
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
E++E +G+ ++ +L + P SLD +G ++ P FI
Sbjct: 199 ELSEESGIDESKIEMLLRQSRDPVSLDMPVGADEE-APLGDFI 240
>gi|323453176|gb|EGB09048.1| hypothetical protein AURANDRAFT_53467 [Aureococcus anophagefferens]
Length = 468
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 128/227 (56%), Gaps = 5/227 (2%)
Query: 204 SVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFA 263
+V D + L + + LL+++EE L+ +Q L EG+R L+ G PT
Sbjct: 126 AVSYKDRDEGLHWQIRNMGQTALLSSDEEKALARRVQRLCTWEGIRANLTASLGREPTEL 185
Query: 264 QWAAAAGV-----DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQE 318
+W AAA + + + + K MI +N+RLV+SI+K YQ G++ QD++QE
Sbjct: 186 EWGAAARISRAACENGSFEKARKKCLKAKAAMINANLRLVVSISKRYQHRGLHFQDVIQE 245
Query: 319 GCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEAR 378
G GL R EKFD KGFKFSTYA WWIKQAV ++++DQSRTIRLP H+ + +K+
Sbjct: 246 GTFGLTRAVEKFDPEKGFKFSTYATWWIKQAVMRAIADQSRTIRLPVHVHDQLQSMKKVT 305
Query: 379 KQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGIN 425
+ L +E GR +EE+A L+ ++ + + S+D + ++
Sbjct: 306 RDLGAELGRECTDEELAGKLDLATTKMDWLRSCERQTMSMDATVRVS 352
>gi|427418816|ref|ZP_18908999.1| RNA polymerase, sigma subunit, RpsC/SigC [Leptolyngbya sp. PCC
7375]
gi|425761529|gb|EKV02382.1| RNA polymerase, sigma subunit, RpsC/SigC [Leptolyngbya sp. PCC
7375]
Length = 434
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 114/185 (61%), Gaps = 13/185 (7%)
Query: 250 EVLSERCGG-----SPTFA----QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVIS 300
E LS+ CG PT QWA G+ +EL + G K+ MI +N+RLV+S
Sbjct: 150 ERLSKECGIESIELKPTLQAGKRQWAELVGMSVQELDEACSEGTRAKEHMIKANLRLVVS 209
Query: 301 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 360
+AK YQ G+ L DL+QEG GL R EKFD +KG++FSTYA+WWI+Q + ++++ QSRT
Sbjct: 210 VAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRT 269
Query: 361 IRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR--SL 418
IRLP H+ E ++K+A++++ GR E++A ++ ++ VLL K PR SL
Sbjct: 270 IRLPVHITEKLNKIKKAQRKISQTKGRTATVEDIARELKMTAPQVREVLL--KVPRSISL 327
Query: 419 DQKIG 423
+ K+G
Sbjct: 328 ETKVG 332
>gi|302543058|ref|ZP_07295400.1| RNA polymerase principal sigma factor HrdD [Streptomyces
hygroscopicus ATCC 53653]
gi|302460676|gb|EFL23769.1| RNA polymerase principal sigma factor HrdD [Streptomyces
himastatinicus ATCC 53653]
Length = 333
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 81/197 (41%), Positives = 121/197 (61%), Gaps = 10/197 (5%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A +E++LS ++ + + + + +E G AAG + EL G
Sbjct: 47 LLDAAKEVELSQAVEAGVYAQQILDGEAEDTG----------AAGASREELEAIAAEGAR 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
KD I SN+RLV+++A+ Y +G+ L DL+QEG GLVR EKFD +KGFKFSTYA WW
Sbjct: 97 AKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYTKGFKFSTYATWW 156
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +S++DQSRTIRLP H+VE R++ +++ E+GR P + E+AE G + +R+
Sbjct: 157 IRQAITRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGREPEHMEIAEELGSTPERV 216
Query: 406 HAVLLSPKAPRSLDQKI 422
VL + P SL+ +
Sbjct: 217 SDVLDWARDPVSLNMSV 233
>gi|18477828|emb|CAC83737.1| RNA polymerase sigma 70 [Rhodococcus fascians D188]
Length = 474
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 142/260 (54%), Gaps = 13/260 (5%)
Query: 167 RSRRQTERKARRTRAAEKAAAN--VMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSS 224
R RRQ E A AE A+ V + R+ R + +D +R
Sbjct: 125 RRRRQPEEDATSEPTAEDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKV 184
Query: 225 RLLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYG 283
LL A EE++L+ I+ L +E +RE S G AQ +R++ G
Sbjct: 185 ALLNAEEEVELAKRIEAGLFAVEKMRE--SAEKGEKLPVAQ--------RRDMTWICRDG 234
Query: 284 ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH 343
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA
Sbjct: 235 NRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYAT 294
Query: 344 WWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMK 403
WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +
Sbjct: 295 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPE 354
Query: 404 RLHAVLLSPKAPRSLDQKIG 423
++ + + P SLDQ IG
Sbjct: 355 KVLEIQQYAREPISLDQTIG 374
>gi|37520903|ref|NP_924280.1| RNA polymerase sigma factor RpoD [Gloeobacter violaceus PCC 7421]
gi|35211898|dbj|BAC89275.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
Length = 350
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 121/198 (61%), Gaps = 5/198 (2%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL EE++L+ I L LE R S W +A + ++ + G
Sbjct: 54 LLKPAEEIELARRIATWLSLEEKRSKFQAVAAES-----WLESANLTPQQWSTIVREGER 108
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+S+AK YQG G++L DL+QEG GL+R AEKFD ++GFKFSTYA WW
Sbjct: 109 AKAHLVKANLRLVVSVAKKYQGRGLHLLDLIQEGTLGLIRAAEKFDYTRGFKFSTYATWW 168
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q + ++++ Q+RTIRLP H+VE R+K+A +QL + GR P+ +E+A+A + +L
Sbjct: 169 IRQGITRAIAMQARTIRLPVHIVEKVNRIKKATRQLSQQLGRSPSEDEIAQAVEMDADQL 228
Query: 406 HAVLLSPKAPRSLDQKIG 423
V + + P SL+ +G
Sbjct: 229 RFVRKAIQLPVSLETPVG 246
>gi|427734848|ref|YP_007054392.1| RNA polymerase, sigma subunit, RpsC/SigC [Rivularia sp. PCC 7116]
gi|427369889|gb|AFY53845.1| RNA polymerase, sigma subunit, RpsC/SigC [Rivularia sp. PCC 7116]
Length = 419
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 140/262 (53%), Gaps = 47/262 (17%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGL---------------------R 249
+D +R RLL +EE+ + +Q LKL L +
Sbjct: 62 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYLKLRILLSEAASKGDELLAHYLKIIEAQ 121
Query: 250 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYG----------------------ILCK 287
E L+ G P+ +WA AG+++ EL+ L+ G + K
Sbjct: 122 ERLTSELGHRPSMKRWANTAGIEESELKGALSQGKRRWAETAKLTVQELEQIQTQGLQAK 181
Query: 288 DKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIK 347
+ MI +N+RLV+S+AK YQ G+ L DLVQEG GL R EKFD +KG++FSTYA+WWI+
Sbjct: 182 EHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIR 241
Query: 348 QAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHA 407
Q + ++++ SRTIRLP H+ E ++K+A++++ E GR P E++A ++ ++
Sbjct: 242 QGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLAVELEMTPAQVRE 301
Query: 408 VLLSPKAPR--SLDQKIGINQN 427
VLL + PR SL+ K+G +++
Sbjct: 302 VLL--RVPRSVSLETKVGKDKD 321
>gi|256396128|ref|YP_003117692.1| RpoD subfamily RNA polymerase sigma-70 subunit [Catenulispora
acidiphila DSM 44928]
gi|256362354|gb|ACU75851.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Catenulispora
acidiphila DSM 44928]
Length = 390
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 72/153 (47%), Positives = 106/153 (69%), Gaps = 4/153 (2%)
Query: 275 ELRRRLNYGIL----CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
+LRR L +L K ++I +N+RLV+SIAK Y G GM++ DLVQEG GL+R EKF
Sbjct: 138 QLRRELAILVLEGQAAKRRLIEANLRLVVSIAKRYLGRGMSILDLVQEGNLGLIRAVEKF 197
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D ++G+KFSTYA WWI+QA+ ++L+DQ+RTIR+P H+VE RV +++L ENG P
Sbjct: 198 DYTRGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELMNRVVRLQRRLLQENGVEPT 257
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
+++AE G++++R+ VL + P SL +G
Sbjct: 258 PDDIAEVLGVAVERVVEVLRLAQEPVSLHAPVG 290
>gi|345008771|ref|YP_004811125.1| RpoD subfamily RNA polymerase sigma-70 subunit [Streptomyces
violaceusniger Tu 4113]
gi|344035120|gb|AEM80845.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces
violaceusniger Tu 4113]
Length = 334
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 104/157 (66%)
Query: 266 AAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 325
A AAG + EL G KD I SN+RLV+++A+ Y +G+ L DL+QEG GLVR
Sbjct: 78 APAAGASREELAAIAAEGARAKDIFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVR 137
Query: 326 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSEN 385
EKFD +KGFKFSTYA WWI+QA+ +S++DQSRTIRLP H+VE R++ +++ E+
Sbjct: 138 AVEKFDYTKGFKFSTYATWWIRQAITRSIADQSRTIRLPVHLVEELGRIRRVQREFNREH 197
Query: 386 GRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKI 422
GR P + E+A G +M+R+ VL + P SL+ +
Sbjct: 198 GREPEHAEIAVELGSTMERVSDVLDWARDPVSLNMSV 234
>gi|291295726|ref|YP_003507124.1| RNA polymerase sigma 70 subunit, RpoD subfamily [Meiothermus ruber
DSM 1279]
gi|290470685|gb|ADD28104.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Meiothermus ruber
DSM 1279]
Length = 507
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 92/252 (36%), Positives = 135/252 (53%), Gaps = 32/252 (12%)
Query: 208 VDYSDPLRYLRATTSSSRLLTANEEMQLS-------AGIQDLLKLEGL-----REVLSER 255
+ SDP+R LLT EE+ L+ A Q L + GL R VL +
Sbjct: 159 ISTSDPVRQYLHEIGQVPLLTLEEEIDLARRVEEGVAAAQRLAEETGLDAELIRHVLRSQ 218
Query: 256 CGGSPTFAQWAAA---------AGVD------QRELRRRLNY---GILCKDKMITSNIRL 297
GS A A VD RE++R L+ G +C+ +I +N+RL
Sbjct: 219 VQGSSRVASIPGTDLRIDPETIAAVDARLRALPREVKRYLHIARDGEICRQHLIEANLRL 278
Query: 298 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 357
V+SIAK Y G G++ DL+QEG +GL+R EKF+ + FKFSTYA WWI+QA+ ++++DQ
Sbjct: 279 VVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEFKRRFKFSTYATWWIRQAINRAIADQ 338
Query: 358 SRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEAT--GLSMKRLHAVLLSPKAP 415
+RTIR+P HMVE ++ +Q+ E GR P+ EE+A+A G K++ + P
Sbjct: 339 ARTIRIPVHMVETINKLTRTARQMQQELGREPSYEEIADAMGPGWDAKKVEETFKIAQEP 398
Query: 416 RSLDQKIGINQN 427
SL+ IG ++
Sbjct: 399 VSLETPIGDEKD 410
>gi|291439967|ref|ZP_06579357.1| transcription initiation factor sigma [Streptomyces ghanaensis ATCC
14672]
gi|291342862|gb|EFE69818.1| transcription initiation factor sigma [Streptomyces ghanaensis ATCC
14672]
Length = 335
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 86/204 (42%), Positives = 119/204 (58%), Gaps = 14/204 (6%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR S RLLTA +E++L+ I+ L E L L+E P + +RE
Sbjct: 40 YLR-LISRVRLLTAEQEVELAKRIEAGLYAERL---LAEEPVLEPRY----------RRE 85
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 335
L G K+ + +N+RLV+S+AK Y G G+ DL+QEG GL+R EKFD +KG
Sbjct: 86 LGLLAEDGRRAKNHLTEANLRLVVSVAKRYTGRGLQFMDLIQEGNAGLIRAVEKFDYTKG 145
Query: 336 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVA 395
FKFSTYA WWIKQ + ++++DQSRTIR+P H VE RV R++L G P E+VA
Sbjct: 146 FKFSTYATWWIKQGITRAMADQSRTIRIPVHAVEVINRVARVRRELIRATGTEPTPEDVA 205
Query: 396 EATGLSMKRLHAVLLSPKAPRSLD 419
E +S+++L + + P SLD
Sbjct: 206 ERASISVEKLAELDAYAREPVSLD 229
>gi|294812504|ref|ZP_06771147.1| RNA polymerase sigma factor [Streptomyces clavuligerus ATCC 27064]
gi|294325103|gb|EFG06746.1| RNA polymerase sigma factor [Streptomyces clavuligerus ATCC 27064]
Length = 436
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 81/203 (39%), Positives = 122/203 (60%), Gaps = 12/203 (5%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE++L+ ++ L E E+ +P AA +D R + G +
Sbjct: 151 LLTAAEEVELARRVEAGLFAE-------EKLAATPDLNSSRLAADLD-----RLVVMGRM 198
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G+KFSTYA WW
Sbjct: 199 AKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYTRGYKFSTYATWW 258
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++L+DQ+RTIR+P H+VE RV ++++ E G P EEVA L +R+
Sbjct: 259 IRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQEQGSEPTPEEVAAQLDLPPERV 318
Query: 406 HAVLLSPKAPRSLDQKIGINQNL 428
VL + P SL +G +++
Sbjct: 319 SEVLRLAQEPVSLHAPVGEEEDV 341
>gi|154498377|ref|ZP_02036755.1| hypothetical protein BACCAP_02366 [Bacteroides capillosus ATCC
29799]
gi|150272688|gb|EDM99866.1| RNA polymerase sigma factor RpoD [Pseudoflavonifractor capillosus
ATCC 29799]
Length = 441
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 123/215 (57%), Gaps = 8/215 (3%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLS--AGIQDLLKLEGLREVLSERCGGSPTFAQWAAA 268
DP+R LL +EE+QL+ G D K + E+ + G P
Sbjct: 133 DDPVRMYLKEIGKVNLLNPDEEVQLAQDMGAGDAAKAR-MAEIEAAEKRGEPIVLTPE-- 189
Query: 269 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 328
+++ L++ + G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ E
Sbjct: 190 ---EEKALKKDIRRGEAAKQRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVE 246
Query: 329 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH 388
KFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE +V +QL E G
Sbjct: 247 KFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKVIRVSRQLLQELGHD 306
Query: 389 PNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
P+ EE+AE + + ++ +L + P SL+ IG
Sbjct: 307 PSPEEIAEEMNMPVDKVREILKIAQEPVSLETPIG 341
>gi|40353297|gb|AAR84412.1| essential primary sigma 70 factor [Frankia sp. EaI-12]
Length = 409
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 123/217 (56%), Gaps = 20/217 (9%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
S+P+R LLTA E++ L+ I+ G + A A
Sbjct: 109 SEPVRMYLKEIGKVPLLTAEEQVDLAKRIE----------------AGLFASDKLAVATK 152
Query: 271 VDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 326
++RR L G + K K++ +N+RLV+SIAK Y G GM DL+QEG GL+R
Sbjct: 153 KTSPQMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRA 212
Query: 327 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG 386
EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + G
Sbjct: 213 VEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLG 272
Query: 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
R P+ EE+A+ L+ ++ +L + P SL+ IG
Sbjct: 273 REPSPEEIAKEMDLTPDKVREILKVSQEPVSLETPIG 309
>gi|293376344|ref|ZP_06622581.1| RNA polymerase sigma factor RpoD [Turicibacter sanguinis PC909]
gi|325843397|ref|ZP_08167955.1| RNA polymerase sigma factor RpoD [Turicibacter sp. HGF1]
gi|292645033|gb|EFF63106.1| RNA polymerase sigma factor RpoD [Turicibacter sanguinis PC909]
gi|325489319|gb|EGC91693.1| RNA polymerase sigma factor RpoD [Turicibacter sp. HGF1]
Length = 456
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 87/234 (37%), Positives = 133/234 (56%), Gaps = 24/234 (10%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQ------DLLKL----EGLREVLSERCGGSP 260
+DP+R LL++ EE+ + I+ ++L++ E L E L ER
Sbjct: 125 NDPVRMYLKEIGRVELLSSQEEINFAKKIERGDISSEILEIRRKNEPLPEELLERID--- 181
Query: 261 TFAQWAAAA--------GVDQ---RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 309
Q A A GV + E RR + G K +++ +N+RLV+SIAK + G G
Sbjct: 182 LLIQDAGEANDGNEFLIGVTELSDEEARRVIQEGEYAKKRLVEANLRLVVSIAKRHVGRG 241
Query: 310 MNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVE 369
M DL+QEG GL++ EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE
Sbjct: 242 MLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVE 301
Query: 370 ATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
++ ++QL E GR P EE++E G++ +++ +L + P SL+ +G
Sbjct: 302 TINKLVRIQRQLVQELGREPLPEEISEKMGIAPEKVREILKISQEPVSLESPVG 355
>gi|345000232|ref|YP_004803086.1| RpoD subfamily RNA polymerase sigma-70 subunit [Streptomyces sp.
SirexAA-E]
gi|344315858|gb|AEN10546.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces sp.
SirexAA-E]
Length = 333
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 97/247 (39%), Positives = 137/247 (55%), Gaps = 21/247 (8%)
Query: 182 AEKAAANVMSVKSGSTSRRK--RPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLS--- 236
A +A A S +SG T R R E+ D + + + LL A +E+ LS
Sbjct: 2 ATRAVARRSSAESGGTDRASSVRAGGGEIADRDLVGMYLDEIARTPLLDAAKEVDLSQTI 61
Query: 237 -AGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNI 295
AG+ L+G EV SE A G + EL + G KD I SN+
Sbjct: 62 EAGVYAQQILDG--EVESE-------------AGGAKREELEALVAEGERAKDIFIRSNL 106
Query: 296 RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 355
RLV+++A+ Y AG+ L DL+QEG GLVR EKFD +KGFKFSTYA WWI+QA+ +S++
Sbjct: 107 RLVVAVARRYPRAGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIA 166
Query: 356 DQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAP 415
DQSRTIRLP H+VE R++ +++ E+GR P + E+A G + +R+ VL + P
Sbjct: 167 DQSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEHAEIAAELGSNTERVGNVLDWARDP 226
Query: 416 RSLDQKI 422
SL+ +
Sbjct: 227 VSLNMSV 233
>gi|186681474|ref|YP_001864670.1| RNA polymerase sigma factor SigC [Nostoc punctiforme PCC 73102]
gi|186463926|gb|ACC79727.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 416
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 134/237 (56%), Gaps = 31/237 (13%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 274
RYLR R++ AN I L+L ++E L+ G P+ +WAA A +
Sbjct: 89 RYLRM-----RIVLANAAKLGDEVIIPYLRLVEVQERLTSELGHRPSLERWAATADIVLS 143
Query: 275 ELRRRL----------------------NYGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
+LR L + G+ K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 144 DLRPTLANGKRRWAEIAKLTVEELEQVQSQGLQAKEHMIKANLRLVVSVAKKYQNRGLEL 203
Query: 313 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY 372
DLVQEG GL R EKFD +KG++FSTYA+WWI+Q + ++++ SRTIRLP H+ E
Sbjct: 204 LDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLN 263
Query: 373 RVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR--SLDQKIGINQN 427
++K+A++++ E GR P E++A ++ ++ VLL + PR SL+ K+G +++
Sbjct: 264 KIKKAQRKIAQEKGRTPTLEDLATELEMTPTQVREVLL--RVPRSVSLETKVGKDKD 318
>gi|254389040|ref|ZP_05004270.1| RNA polymerase principal sigma factor hrdA [Streptomyces
clavuligerus ATCC 27064]
gi|326441042|ref|ZP_08215776.1| RNA polymerase sigma factor [Streptomyces clavuligerus ATCC 27064]
gi|197702757|gb|EDY48569.1| RNA polymerase principal sigma factor hrdA [Streptomyces
clavuligerus ATCC 27064]
Length = 385
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 81/203 (39%), Positives = 122/203 (60%), Gaps = 12/203 (5%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE++L+ ++ L E E+ +P AA +D R + G +
Sbjct: 100 LLTAAEEVELARRVEAGLFAE-------EKLAATPDLNSSRLAADLD-----RLVVMGRM 147
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G+KFSTYA WW
Sbjct: 148 AKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYTRGYKFSTYATWW 207
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++L+DQ+RTIR+P H+VE RV ++++ E G P EEVA L +R+
Sbjct: 208 IRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQEQGSEPTPEEVAAQLDLPPERV 267
Query: 406 HAVLLSPKAPRSLDQKIGINQNL 428
VL + P SL +G +++
Sbjct: 268 SEVLRLAQEPVSLHAPVGEEEDV 290
>gi|428315381|ref|YP_007113263.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoria
nigro-viridis PCC 7112]
gi|428239061|gb|AFZ04847.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoria
nigro-viridis PCC 7112]
Length = 421
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 90/259 (34%), Positives = 140/259 (54%), Gaps = 48/259 (18%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKL-----------EGL----------R 249
+D +R RLL +EE+ + +Q +KL EGL R
Sbjct: 63 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYIKLLELRNTVASQEEGLIARFVHLIEVR 122
Query: 250 EVLSERCGGSPTFAQWAAAAGV-DQRELRRRLNYG----------------------ILC 286
+ L+ + G P+ +WA AGV D EL+R ++ G +
Sbjct: 123 DRLAAQLGHKPSLERWALTAGVGDVPELKRIMSEGKRQWAELAEMTVETIERIQAEGVEA 182
Query: 287 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI 346
KD MI +N+RLV+S+AK YQ G+ L DL+QEG GL R EKFD ++G++FSTYA+WWI
Sbjct: 183 KDHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTRGYRFSTYAYWWI 242
Query: 347 KQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLH 406
+Q + ++++ QSRTIRLP H+ E ++K+A++++ E GR E++A ++ ++
Sbjct: 243 RQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGRTATIEDIAVELDMTAPQVR 302
Query: 407 AVLLSPKAPR--SLDQKIG 423
VLL + PR SL+ K+G
Sbjct: 303 EVLL--RVPRSVSLETKVG 319
>gi|195953901|ref|YP_002122191.1| RpoD family RNA polymerase sigma-70 subunit [Hydrogenobaculum sp.
Y04AAS1]
gi|195933513|gb|ACG58213.1| RNA polymerase, sigma 70 subunit, RpoD family [Hydrogenobaculum sp.
Y04AAS1]
Length = 578
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 65/142 (45%), Positives = 102/142 (71%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
KD M+ SN+RLV+SIAK Y G++ DL+QEG GL++ +K+D KGFKFSTYA WW
Sbjct: 340 SKDMMVKSNLRLVVSIAKKYINRGLHFLDLIQEGNMGLMKAVDKYDYKKGFKFSTYATWW 399
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
IKQA+ ++++DQ++TIR+P HM+E ++ + K+L+ E GR P+ EE+A+A +S +++
Sbjct: 400 IKQAITRAIADQAKTIRIPVHMIETINKISKVSKKLFQEYGREPSPEEIAKALNMSPEKV 459
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
+L S + P SL+ IG +++
Sbjct: 460 RKILKSIQEPISLETPIGDDED 481
>gi|401679368|ref|ZP_10811299.1| RNA polymerase sigma factor RpoD [Veillonella sp. ACP1]
gi|400219589|gb|EJO50453.1| RNA polymerase sigma factor RpoD [Veillonella sp. ACP1]
Length = 388
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 119/216 (55%), Gaps = 28/216 (12%)
Query: 208 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
V+ DP+R LL+A+EE+ L+ I+
Sbjct: 102 VNIDDPVRMYLKEIGRVPLLSADEEIVLAKQIE--------------------------- 134
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
AG ++ + + K K++ +N+RLV+SIAK Y G GM DL+QEG GL++
Sbjct: 135 -AGAEEDATYKEIQLSKKAKKKLVDANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAV 193
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
+KFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL + GR
Sbjct: 194 DKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRISRQLLQDKGR 253
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
P EE+AE G++ +R+ + + P SL+ IG
Sbjct: 254 EPTPEEIAEGMGITAERVREIQKIAQEPVSLETPIG 289
>gi|334117906|ref|ZP_08491997.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333461015|gb|EGK89623.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 421
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 90/259 (34%), Positives = 140/259 (54%), Gaps = 48/259 (18%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKL-----------EGL----------R 249
+D +R RLL +EE+ + +Q +KL EGL R
Sbjct: 63 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYIKLLELRNTVASQEEGLIGRFVHLIEVR 122
Query: 250 EVLSERCGGSPTFAQWAAAAGV-DQRELRRRLNYG----------------------ILC 286
+ L+ + G P+ +WA AGV D EL+R ++ G +
Sbjct: 123 DRLAAQLGHKPSLERWALTAGVGDVPELKRIMSEGKRQWAELAEMTVEAIERVQAEGVEA 182
Query: 287 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI 346
KD MI +N+RLV+S+AK YQ G+ L DL+QEG GL R EKFD ++G++FSTYA+WWI
Sbjct: 183 KDHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTRGYRFSTYAYWWI 242
Query: 347 KQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLH 406
+Q + ++++ QSRTIRLP H+ E ++K+A++++ E GR E++A ++ ++
Sbjct: 243 RQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGRTATIEDIAVELDMTAPQVR 302
Query: 407 AVLLSPKAPR--SLDQKIG 423
VLL + PR SL+ K+G
Sbjct: 303 EVLL--RVPRSVSLETKVG 319
>gi|331696864|ref|YP_004333103.1| RpoD subfamily RNA polymerase sigma-70 subunit [Pseudonocardia
dioxanivorans CB1190]
gi|326951553|gb|AEA25250.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudonocardia
dioxanivorans CB1190]
Length = 461
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 79/199 (39%), Positives = 121/199 (60%), Gaps = 11/199 (5%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 284
LL A EE++L+ I+ L E LR + SP +R+LR + G
Sbjct: 173 LLNAEEEVELAKRIEAGLYAAERLRRAIESGEKVSPQL----------RRDLRWIVRDGE 222
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA W
Sbjct: 223 RAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATW 282
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ ++
Sbjct: 283 WIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEK 342
Query: 405 LHAVLLSPKAPRSLDQKIG 423
+ + + P SLDQ IG
Sbjct: 343 VLEIQQYAREPISLDQTIG 361
>gi|75907387|ref|YP_321683.1| RNA polymerase sigma factor SigC [Anabaena variabilis ATCC 29413]
gi|75701112|gb|ABA20788.1| RNA polymerase, sigma subunit, RpsC/SigC [Anabaena variabilis ATCC
29413]
Length = 416
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 134/237 (56%), Gaps = 31/237 (13%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ- 273
RYL+ R++ AN Q L L ++E L+ G P+ +WAA AG++
Sbjct: 89 RYLKL-----RVVLANAAKQGDEVATPYLHLIEVQERLASELGHRPSLERWAATAGINLC 143
Query: 274 ---------------------RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
EL + + G+ K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 144 DLKPILSEGKRRWAEIAKMTVEELEKMQSQGLQSKEHMIKANLRLVVSVAKKYQNRGLEL 203
Query: 313 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY 372
DLVQEG GL R EKFD +KG++FSTYA+WWI+Q + ++++ SRTIRLP H+ E
Sbjct: 204 LDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLN 263
Query: 373 RVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR--SLDQKIGINQN 427
++K+A++++ E GR P E++A ++ ++ VLL + PR SL+ K+G +++
Sbjct: 264 KIKKAQRKIAQEKGRTPTLEDLAIELDMTPTQVREVLL--RVPRSVSLETKVGKDKD 318
>gi|303229406|ref|ZP_07316196.1| RNA polymerase sigma factor RpoD [Veillonella atypica
ACS-134-V-Col7a]
gi|303230872|ref|ZP_07317619.1| RNA polymerase sigma factor RpoD [Veillonella atypica
ACS-049-V-Sch6]
gi|429760133|ref|ZP_19292623.1| RNA polymerase sigma factor RpoD [Veillonella atypica KON]
gi|302514632|gb|EFL56627.1| RNA polymerase sigma factor RpoD [Veillonella atypica
ACS-049-V-Sch6]
gi|302515942|gb|EFL57894.1| RNA polymerase sigma factor RpoD [Veillonella atypica
ACS-134-V-Col7a]
gi|429178538|gb|EKY19816.1| RNA polymerase sigma factor RpoD [Veillonella atypica KON]
Length = 388
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 119/216 (55%), Gaps = 28/216 (12%)
Query: 208 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
V+ DP+R LL+A+EE+ L+ I+
Sbjct: 102 VNIDDPVRMYLKEIGRVPLLSADEEIVLAKQIE--------------------------- 134
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
AG ++ + + K K++ +N+RLV+SIAK Y G GM DL+QEG GL++
Sbjct: 135 -AGAEEDATYKEIQLSKKAKKKLVDANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAV 193
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
+KFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL + GR
Sbjct: 194 DKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRISRQLLQDKGR 253
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
P EE+AE G++ +R+ + + P SL+ IG
Sbjct: 254 EPTPEEIAEGMGITAERVREIQKIAQEPVSLETPIG 289
>gi|17229184|ref|NP_485732.1| RNA polymerase sigma factor SigC [Nostoc sp. PCC 7120]
gi|20141790|sp|Q03066.2|RPSC_ANASP RecName: Full=RNA polymerase sigma-C factor
gi|17135512|dbj|BAB78058.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
Length = 416
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 134/237 (56%), Gaps = 31/237 (13%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ- 273
RYL+ R++ AN Q L L ++E L+ G P+ +WAA AG++
Sbjct: 89 RYLKL-----RIVLANAVKQGDEVATPYLHLIEVQERLASELGHRPSLERWAATAGINLC 143
Query: 274 ---------------------RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
EL + + G+ K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 144 DLKPILSEGKRRWAEIAKMTVEELEKMQSQGLQSKEHMIKANLRLVVSVAKKYQNRGLEL 203
Query: 313 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY 372
DLVQEG GL R EKFD +KG++FSTYA+WWI+Q + ++++ SRTIRLP H+ E
Sbjct: 204 LDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLN 263
Query: 373 RVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR--SLDQKIGINQN 427
++K+A++++ E GR P E++A ++ ++ VLL + PR SL+ K+G +++
Sbjct: 264 KIKKAQRKIAQEKGRTPTLEDLAIELDMTPTQVREVLL--RVPRSVSLETKVGKDKD 318
>gi|26665386|dbj|BAC44904.1| principal sigma factor [Fischerella major NIES-592]
Length = 203
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 96/137 (70%)
Query: 291 ITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAV 350
+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+
Sbjct: 1 VQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAI 60
Query: 351 RKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 410
++++DQSRTIRLP H+ E R+K+ K L E GR P EE+A +++++L ++
Sbjct: 61 TRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIVK 120
Query: 411 SPKAPRSLDQKIGINQN 427
S + P SL+ IG ++
Sbjct: 121 SAQLPISLETPIGKEED 137
>gi|119512139|ref|ZP_01631231.1| RNA polymerase sigma-like factor [Nodularia spumigena CCY9414]
gi|119463229|gb|EAW44174.1| RNA polymerase sigma-like factor [Nodularia spumigena CCY9414]
Length = 442
Score = 151 bits (381), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 134/237 (56%), Gaps = 31/237 (13%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 274
RYLR T + +E+ + L L ++E L+ G P+ +WA AG++
Sbjct: 115 RYLRMRTVLADAAKEGDEI-----VAPFLNLVQVQERLTSELGHRPSLERWANTAGIELV 169
Query: 275 ELRRRL----------------------NYGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
+L+ L + G+ K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 170 DLKPTLANGKRRWAEIAQLTVEELEQVQSQGLQAKEHMIKANLRLVVSVAKKYQNRGLEL 229
Query: 313 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY 372
DLVQEG GL R EKFD +KG++FSTYA+WWI+Q + ++++ SRTIRLP H+ E
Sbjct: 230 LDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLN 289
Query: 373 RVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR--SLDQKIGINQN 427
++K+A++++ E GR P E++A ++ ++ VLL K PR SL+ K+G +++
Sbjct: 290 KIKKAQRKIAQEKGRTPTLEDLAIELEMTPTQVREVLL--KVPRSVSLETKVGKDKD 344
>gi|365862000|ref|ZP_09401757.1| putative RNA polymerase principal sigma factor [Streptomyces sp.
W007]
gi|364008482|gb|EHM29465.1| putative RNA polymerase principal sigma factor [Streptomyces sp.
W007]
Length = 363
Score = 151 bits (381), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 88/214 (41%), Positives = 126/214 (58%), Gaps = 15/214 (7%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
SD R YLR + LLTA EE++L+ ++ L E ER G+P A
Sbjct: 64 SDLFRQYLREIGRIT-LLTAAEEVELARRVEAGLFAE-------ERLAGTPDLDSRLAG- 114
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
+L R + G K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EK
Sbjct: 115 -----DLDRLVVMGRTAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEK 169
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
FD ++G+KFSTYA WWI+QA+ ++L+DQ+RTIR+P H+VE RV +++L E G P
Sbjct: 170 FDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRLLQERGVEP 229
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
EE+A L+ +R+ VL + P SL +G
Sbjct: 230 TAEEIAVELDLTPERVTEVLRLAQEPVSLHAPVG 263
>gi|172040574|ref|YP_001800288.1| RNA polymerase sigma factor SigB [Corynebacterium urealyticum DSM
7109]
gi|171851878|emb|CAQ04854.1| RNA polymerase sigma factor B [Corynebacterium urealyticum DSM
7109]
Length = 340
Score = 151 bits (381), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 124/210 (59%), Gaps = 14/210 (6%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA +E++LS I+ L E L + G T A+ +R+++ G
Sbjct: 56 LLTAEDEVELSQRIEAGLYAEQLL-----KSGEPLTRAK--------KRDVKILAREGKA 102
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
+ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD KGFKFSTYA WW
Sbjct: 103 ARTHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYKKGFKFSTYATWW 162
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ + ++DQSRTIRLP H+VE ++ ++++Y GR EE+AE +G+ R+
Sbjct: 163 IRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQHLGREATYEELAEESGIPEDRI 222
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
++ + P SLD +G ++ P FI
Sbjct: 223 EMLMKQSRDPVSLDMPVGTDEE-APLGDFI 251
>gi|218440090|ref|YP_002378419.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218172818|gb|ACK71551.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 295
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 124/201 (61%), Gaps = 25/201 (12%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
DP+R LL + EE+QL+ +Q++L L +E L+ A V
Sbjct: 7 DPVRSYLQEIGRIPLLNSEEEVQLATKVQNMLPLLE-KENLTA-----------AEKKIV 54
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+Q G + K KMI +N+RLV+SIAK YQ G++L DL+QEG GL+R EKFD
Sbjct: 55 EQ---------GQIAKRKMIQANLRLVVSIAKRYQRRGLSLLDLIQEGSLGLIRAVEKFD 105
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
SKG+KFSTYA+WW++QA+ ++L+++SRTIRLP HM E ++K++ ++L E GR PN
Sbjct: 106 PSKGYKFSTYAYWWVRQAITRALAEKSRTIRLPIHMTENLNQLKKSVRELTGELGRKPNE 165
Query: 392 EEVAEATGLSMKRL----HAV 408
+EVA+ + +++L HAV
Sbjct: 166 QEVAQRMEIPVEKLREIRHAV 186
>gi|448823552|ref|YP_007416717.1| RNA polymerase sigma factor B [Corynebacterium urealyticum DSM
7111]
gi|448277049|gb|AGE36473.1| RNA polymerase sigma factor B [Corynebacterium urealyticum DSM
7111]
Length = 340
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 124/210 (59%), Gaps = 14/210 (6%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA +E++LS I+ L E L + G T A+ +R+++ G
Sbjct: 56 LLTAEDEVELSQRIEAGLYAEQLL-----KSGEPLTRAK--------KRDVKILAREGKA 102
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
+ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD KGFKFSTYA WW
Sbjct: 103 ARTHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYKKGFKFSTYATWW 162
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ + ++DQSRTIRLP H+VE ++ ++++Y GR EE+AE +G+ R+
Sbjct: 163 IRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQHLGREATYEELAEESGIPEDRI 222
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
++ + P SLD +G ++ P FI
Sbjct: 223 EMLMKQSRDPVSLDMPVGTDEE-APLGDFI 251
>gi|21466021|pdb|1L9Z|H Chain H, Thermus Aquaticus Rna Polymerase HoloenzymeFORK-Junction
Promoter Dna Complex At 6.5 A Resolution
gi|11527292|gb|AAG36964.1|AF291720_1 sigma factor SigA [Thermus aquaticus]
Length = 438
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 92/252 (36%), Positives = 138/252 (54%), Gaps = 32/252 (12%)
Query: 208 VDYSDPLRYLRATTSSSRLLTANEEMQLS----AGIQDLLKL--------EGLREVLSER 255
V SDP+R LLT EE+ L+ G++ + KL E +REV+ +
Sbjct: 90 VSTSDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAK 149
Query: 256 CGGS------PTFAQWAAAAGVDQ---------RELRRRLNY---GILCKDKMITSNIRL 297
G+ P + V++ +EL+R L+ G + +I +N+RL
Sbjct: 150 ILGTARIQKIPGLKEKPDPKTVEEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRL 209
Query: 298 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 357
V+SIAK Y G G++ DL+QEG +GL+R EKF+ + FKFSTYA WWI+QA+ ++++DQ
Sbjct: 210 VVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFSTYATWWIRQAINRAIADQ 269
Query: 358 SRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEAT--GLSMKRLHAVLLSPKAP 415
+RTIR+P HMVE ++ +QL E GR P+ EE+AEA G KR+ L + P
Sbjct: 270 ARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEP 329
Query: 416 RSLDQKIGINQN 427
SL+ IG ++
Sbjct: 330 VSLETPIGDEKD 341
>gi|119509984|ref|ZP_01629125.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
gi|119512944|ref|ZP_01632006.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
gi|119462397|gb|EAW43372.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
gi|119465308|gb|EAW46204.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
Length = 389
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 127/198 (64%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL +EE++L+ ++ L ++ ++ L G T Q A + +++L RL G +
Sbjct: 91 LLKPDEEVELARRVRFLEEVREVQAALELELGQPTTKVQVAGQLEMTEKQLESRLYQGRV 150
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R EKFD KG+KFSTYA+WW
Sbjct: 151 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 210
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +++++ +RTIRLP H+VE ++K+A+++L + R+PN E+AEA +S+++L
Sbjct: 211 IRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLCRNPNEAEMAEALEISVQQL 270
Query: 406 HAVLLSPKAPRSLDQKIG 423
+ + SL+ ++G
Sbjct: 271 RQLQQLRRQALSLNHRVG 288
>gi|142114|gb|AAA22047.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
Length = 416
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 134/237 (56%), Gaps = 31/237 (13%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ- 273
RYL+ R++ AN Q L L ++E L+ G P+ +WAA AG++
Sbjct: 89 RYLKL-----RIVLANAVKQGDEVATPYLHLIEVQERLASELGHRPSLERWAATAGINLC 143
Query: 274 ---------------------RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
EL + + G+ K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 144 DLKPILSEGKRRWAEIAKMTVEELEKMQSQGLQSKEHMIKANLRLVVSVAKKYQNRGLEL 203
Query: 313 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY 372
DLVQEG GL R EKFD +KG++FSTYA+WWI+Q + ++++ SRTIRLP H+ E
Sbjct: 204 LDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLN 263
Query: 373 RVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR--SLDQKIGINQN 427
++K+A++++ E GR P E++A ++ ++ VLL + PR SL+ K+G +++
Sbjct: 264 KIKKAQRKIAQEKGRTPTLEDLAIELDMTPTQVREVLL--RVPRSVSLETKVGKDKD 318
>gi|325677627|ref|ZP_08157279.1| RNA polymerase sigma factor RpoD [Ruminococcus albus 8]
gi|324110595|gb|EGC04759.1| RNA polymerase sigma factor RpoD [Ruminococcus albus 8]
Length = 366
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 66/138 (47%), Positives = 98/138 (71%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
+ ++ +N+RLV+SIAK Y G GM+ DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 129 ARKRLAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLIKAVEKFDYKKGFKFSTYATWW 188
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE +VK+A QL +NG P+ EE+AE +S++++
Sbjct: 189 IRQAITRAIADQARTIRIPVHMVETITKVKKASSQLLHKNGHDPSPEEIAEDLDMSVEKV 248
Query: 406 HAVLLSPKAPRSLDQKIG 423
++ + P SL+ IG
Sbjct: 249 REIMRIAQDPVSLETPIG 266
>gi|302391478|ref|YP_003827298.1| RpoD subfamily RNA polymerase sigma-70 subunit [Acetohalobium
arabaticum DSM 5501]
gi|302203555|gb|ADL12233.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Acetohalobium
arabaticum DSM 5501]
Length = 358
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/154 (46%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 275 ELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +
Sbjct: 109 ELAKRMEEGDMEAKRMLVEANLRLVVSIAKKYVGRGMLFLDLIQEGNLGLIKAVEKFDYT 168
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KG+KFSTYA WWI+QA+ +S++DQ+RTIR+P HMVE +V + L E GR P EE
Sbjct: 169 KGYKFSTYATWWIRQAITRSIADQARTIRIPVHMVETINKVIRVSRHLLQELGREPTPEE 228
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
+AE LS +++ VL + P SL+ IG ++
Sbjct: 229 IAEEMDLSEEKVREVLKISQEPVSLETPIGEEED 262
>gi|383823563|ref|ZP_09978753.1| RNA polymerase sigma factor SigB [Mycobacterium xenopi RIVM700367]
gi|383338842|gb|EID17201.1| RNA polymerase sigma factor SigB [Mycobacterium xenopi RIVM700367]
Length = 319
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 108/163 (66%), Gaps = 1/163 (0%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+REL + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 69 KRELAMVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 128
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++L+ GR +E
Sbjct: 129 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQNLGREATDE 188
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
E+AE +G+ + +++ +L + P SLD +G ++ P FI
Sbjct: 189 ELAEESGIPIDKINDLLEHSRDPVSLDMPVGSDEE-APLGDFI 230
>gi|377567668|ref|ZP_09796876.1| RNA polymerase sigma factor SigA [Gordonia terrae NBRC 100016]
gi|377535208|dbj|GAB42041.1| RNA polymerase sigma factor SigA [Gordonia terrae NBRC 100016]
Length = 520
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/248 (35%), Positives = 137/248 (55%), Gaps = 19/248 (7%)
Query: 181 AAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQ 240
AA K+ V + R+ R + +D +R LL A EE++L+ I+
Sbjct: 187 AAAKSGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIE 246
Query: 241 -DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKDKMITSNI 295
L E LR ++ G + AQ +R LN+ G K+ ++ +N+
Sbjct: 247 AGLFATERLRRIMD--AGEKLSTAQ------------KRDLNWISRDGNRAKNHLLEANL 292
Query: 296 RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 355
RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA+ ++++
Sbjct: 293 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMA 352
Query: 356 DQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAP 415
DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++ + + P
Sbjct: 353 DQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREP 412
Query: 416 RSLDQKIG 423
SLDQ IG
Sbjct: 413 ISLDQTIG 420
>gi|317056182|ref|YP_004104649.1| RpoD subfamily RNA polymerase sigma-70 subunit [Ruminococcus albus
7]
gi|315448451|gb|ADU22015.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Ruminococcus
albus 7]
Length = 366
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 66/138 (47%), Positives = 97/138 (70%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
+ ++ +N+RLV+SIAK Y G GM+ DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 129 ARKRLAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLIKAVEKFDYKKGFKFSTYATWW 188
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE +VK+ QL +NG P+ EE+AE +S++R+
Sbjct: 189 IRQAITRAIADQARTIRIPVHMVETITKVKKVSSQLLHKNGHDPSPEEIAEELDMSVERV 248
Query: 406 HAVLLSPKAPRSLDQKIG 423
++ + P SL+ IG
Sbjct: 249 REIMRIAQDPVSLETPIG 266
>gi|452944684|ref|YP_007500849.1| RNA polymerase, sigma 70 subunit, RpoD [Hydrogenobaculum sp. HO]
gi|452883102|gb|AGG15806.1| RNA polymerase, sigma 70 subunit, RpoD [Hydrogenobaculum sp. HO]
Length = 578
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 65/142 (45%), Positives = 102/142 (71%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
KD M+ SN+RLV+SIAK Y G++ DL+QEG GL++ +K+D KGFKFSTYA WW
Sbjct: 340 SKDIMVKSNLRLVVSIAKKYINRGLHFLDLIQEGNMGLMKAVDKYDYKKGFKFSTYATWW 399
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
IKQA+ ++++DQ++TIR+P HM+E ++ + K+L+ E GR P+ EE+A+A +S +++
Sbjct: 400 IKQAITRAIADQAKTIRIPVHMIETINKISKVSKKLFQEYGREPSPEEIAKALNMSPEKV 459
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
+L S + P SL+ IG +++
Sbjct: 460 RKILKSIQEPISLETPIGDDED 481
>gi|379709850|ref|YP_005265055.1| RNA polymerase sigma factor [Nocardia cyriacigeorgica GUH-2]
gi|374847349|emb|CCF64419.1| RNA polymerase sigma factor [Nocardia cyriacigeorgica GUH-2]
Length = 454
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/249 (35%), Positives = 139/249 (55%), Gaps = 20/249 (8%)
Query: 181 AAEKAAAN-VMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGI 239
AA+KA+ + V + R+ R + +D +R LL A EE++L+ I
Sbjct: 120 AADKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRI 179
Query: 240 Q-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKDKMITSN 294
+ L E +RE FA+ V +RR N+ G K+ ++ +N
Sbjct: 180 EAGLFAAEKMRE-----------FAEQGEKLPV---AVRRDFNWIIRDGNRAKNHLLEAN 225
Query: 295 IRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSL 354
+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA+ +++
Sbjct: 226 LRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAM 285
Query: 355 SDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKA 414
+DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++ + +
Sbjct: 286 ADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYARE 345
Query: 415 PRSLDQKIG 423
P SLDQ IG
Sbjct: 346 PISLDQTIG 354
>gi|317506478|ref|ZP_07964279.1| sigma-70 protein [Segniliparus rugosus ATCC BAA-974]
gi|316255239|gb|EFV14508.1| sigma-70 protein [Segniliparus rugosus ATCC BAA-974]
Length = 348
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 126/210 (60%), Gaps = 14/210 (6%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA +E+ L+ I+ L E L ++ G +P +REL+ + G
Sbjct: 64 LLTAEDEVTLAKSIEAGLYAEHL---INTSEGLTPQ----------RRRELKAVVRDGRA 110
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
+ ++ +N+RLV+S+AK Y G G+ L DL+QEG GL+R EKFD SKGFKFSTYA WW
Sbjct: 111 ARTHLLEANLRLVVSLAKRYTGRGIPLLDLIQEGNLGLIRAMEKFDYSKGFKFSTYATWW 170
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ + ++DQSRTIRLP H+VE ++ +++L+ + GR +EE++ TG+ R+
Sbjct: 171 IRQAITRGVADQSRTIRLPVHLVEQVNKLSRIKRELHQQLGREATSEELSRETGIPEHRI 230
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
+L + P SLD +G ++ P FI
Sbjct: 231 ADLLDHSRDPVSLDMPVGADEE-APLGDFI 259
>gi|555686|gb|AAA85644.1| sigma factor MysB [Mycobacterium smegmatis str. MC2 155]
Length = 319
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 110/163 (67%), Gaps = 1/163 (0%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L+ + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 69 KRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 128
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++++ GR +E
Sbjct: 129 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDE 188
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
E+AE +G+ +++++ +L + P SLD +G ++ P FI
Sbjct: 189 ELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEE-APLGDFI 230
>gi|357399796|ref|YP_004911721.1| RNA polymerase principal sigma factor hrdD [Streptomyces cattleya
NRRL 8057 = DSM 46488]
gi|386355832|ref|YP_006054078.1| RNA polymerase principal sigma factor [Streptomyces cattleya NRRL
8057 = DSM 46488]
gi|337766205|emb|CCB74916.1| RNA polymerase principal sigma factor hrdD [Streptomyces cattleya
NRRL 8057 = DSM 46488]
gi|365806340|gb|AEW94556.1| RNA polymerase principal sigma factor [Streptomyces cattleya NRRL
8057 = DSM 46488]
Length = 326
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 73/156 (46%), Positives = 104/156 (66%)
Query: 267 AAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 326
+A G + ELR ++ G KD I SN+RLV+++A+ Y +G+ L DL+QEG GLVR
Sbjct: 70 SAEGATEEELRALVDAGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRA 129
Query: 327 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG 386
EKFD +KGFKFSTYA WWI+QA+ +S++DQSRTIRLP H+VE R++ +++ E+G
Sbjct: 130 VEKFDYTKGFKFSTYATWWIRQAITRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHG 189
Query: 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKI 422
R P E+A G S +R+ VL + P SL+ +
Sbjct: 190 RDPEPAEIAAELGASPERVVDVLDWARDPVSLNMAV 225
>gi|3077740|dbj|BAA25788.1| SigC [Cyanidium caldarium]
Length = 424
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/222 (38%), Positives = 119/222 (53%), Gaps = 30/222 (13%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
Y+R RL T E LS QD L RE L + G PT +W+ GV + E
Sbjct: 74 YVREICRLDRL-TDEEVASLSLATQDYCALMKQREELCAKLGREPTDTEWSTTVGVSEEE 132
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQG-------------AGMN----------- 311
+R + G + +++ SN+RLV++IA Y+ GM+
Sbjct: 133 VRNEIERGRRARARLVASNLRLVLAIANRYKSRAVVRSAWKSRSKGGMDMPSHEKVRLQR 192
Query: 312 -----LQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFH 366
L DL+QEG GL+R AEKFD SKGFKFSTYA WWI+QA+++ +S+ SRTIRLP H
Sbjct: 193 QHNIFLGDLIQEGALGLIRAAEKFDPSKGFKFSTYATWWIRQAIQRCVSEHSRTIRLPNH 252
Query: 367 MVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAV 408
+ E+ ++ R +L R P +EEVAEA +++KRL +
Sbjct: 253 VTESLRQIYRMRARLQHVLKRPPTDEEVAEACNMTLKRLKKI 294
>gi|118472772|ref|YP_887083.1| RNA polymerase sigma factor SigB [Mycobacterium smegmatis str. MC2
155]
gi|399987098|ref|YP_006567447.1| RNA polymerase sigma factor sigB [Mycobacterium smegmatis str. MC2
155]
gi|441207679|ref|ZP_20973619.1| RNA polymerase sigma factor [Mycobacterium smegmatis MKD8]
gi|118174059|gb|ABK74955.1| sigma factor SigB [Mycobacterium smegmatis str. MC2 155]
gi|399231659|gb|AFP39152.1| RNA polymerase sigma factor sigB [Mycobacterium smegmatis str. MC2
155]
gi|440627862|gb|ELQ89667.1| RNA polymerase sigma factor [Mycobacterium smegmatis MKD8]
Length = 319
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 110/163 (67%), Gaps = 1/163 (0%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L+ + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 69 KRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 128
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++++ GR +E
Sbjct: 129 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDE 188
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
E+AE +G+ +++++ +L + P SLD +G ++ P FI
Sbjct: 189 ELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEE-APLGDFI 230
>gi|408825995|ref|ZP_11210885.1| RNA polymerase sigma factor [Streptomyces somaliensis DSM 40738]
Length = 363
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/198 (42%), Positives = 118/198 (59%), Gaps = 13/198 (6%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE++L+ I+ L E E+ +P A +L + G
Sbjct: 80 LLTAAEEVELARRIEAGLFAE-------EKLARTPDLDSRLAG------DLDTLVVRGRT 126
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++I +N+RLV+SIAK Y G G+ L DLVQEG GL+R EKFD +GFKFSTYA WW
Sbjct: 127 AKRRLIEANLRLVVSIAKRYAGRGLTLPDLVQEGNLGLIRAVEKFDHERGFKFSTYATWW 186
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++L+DQ+RTIR+P H+VE RV ++++ E+GR P EEVA GL +R+
Sbjct: 187 IRQAMSRALADQARTIRVPVHVVELINRVVRTQRRILQEHGREPTAEEVAAHLGLPPERV 246
Query: 406 HAVLLSPKAPRSLDQKIG 423
VL + P SL +G
Sbjct: 247 GEVLRLAQEPVSLHAPVG 264
>gi|23978372|dbj|BAC21150.1| principal sigma factor [Synechococcus sp. PCC 7001]
Length = 203
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 95/137 (69%)
Query: 291 ITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAV 350
+ S RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+
Sbjct: 1 VQSKFRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAI 60
Query: 351 RKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 410
++++DQSRTIRLP H+ E R+K+ K L E GR P EE+AE+ +++++L +
Sbjct: 61 TRAIADQSRTIRLPVHLYETISRIKKTTKTLSQEFGRKPTEEEIAESMEMTIEKLRFIAK 120
Query: 411 SPKAPRSLDQKIGINQN 427
S + P SL+ IG ++
Sbjct: 121 SAQLPISLETPIGKEED 137
>gi|227503480|ref|ZP_03933529.1| RNA polymerase major sigma subunit [Corynebacterium accolens ATCC
49725]
gi|227075983|gb|EEI13946.1| RNA polymerase major sigma subunit [Corynebacterium accolens ATCC
49725]
Length = 493
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 104/338 (30%), Positives = 169/338 (50%), Gaps = 24/338 (7%)
Query: 87 NSAKPKSKPAISSSADTNTSMWAQLTERERASIIGDSVIVEAAPEEEYSEQQPLNKSADL 146
++A+P+ PA N++ A E E A DSV EQ D
Sbjct: 79 SAAEPQDSPA-------NSAEKAPSEEAEDAEDQLDSV-----------EQDAPADDVDF 120
Query: 147 EPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQ 206
+PTHE+++ E + Q E + ++V + R+ R Q
Sbjct: 121 DPTHEDIEEDEFDAPTDLD-EDDIQEELGEEEDEDEVEDTSSVWDEEESVALRQARKDAQ 179
Query: 207 EVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQW 265
+D +R LL A +E+ L+ I+ L + E+ R G +
Sbjct: 180 LTASADSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYAQHRMDEMEKARAEGD----KA 235
Query: 266 AAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 325
A + +++R+LR G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R
Sbjct: 236 AKLSPMEKRDLRSIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIR 295
Query: 326 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSEN 385
EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L +
Sbjct: 296 AVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDL 355
Query: 386 GRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
GR P +E+A+ ++ +++ + + P SLDQ IG
Sbjct: 356 GREPTPQELAKEMDITEEKVMEIQQYAREPISLDQTIG 393
>gi|23308878|ref|NP_601117.2| RNA polymerase sigma factor [Corynebacterium glutamicum ATCC 13032]
gi|21324681|dbj|BAB99304.1| DNA-directed RNA polymerase sigma subunits (sigma70/sigma32) (SigA)
[Corynebacterium glutamicum ATCC 13032]
gi|385144017|emb|CCH25056.1| RNA polymerase sigma factor [Corynebacterium glutamicum K051]
Length = 498
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 129/228 (56%), Gaps = 3/228 (1%)
Query: 196 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 255
+T R+ R + +D +R LL A +E+ L+ I+ L E + E
Sbjct: 174 ATLRQARKDAELTASADSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYATHRMEEMEEA 233
Query: 256 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 315
A+ A +R+LR G K+ ++ +N+RLV+S+AK Y G GM DL
Sbjct: 234 FAAGDKDAKLTPAV---KRDLRAIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDL 290
Query: 316 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVK 375
+QEG GL+R EKFD SKG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++
Sbjct: 291 IQEGNLGLIRAVEKFDYSKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLG 350
Query: 376 EARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
+++L E GR P +E+++ +S +++ + + P SLDQ IG
Sbjct: 351 RIQRELLQELGREPTPQELSKEMDISEEKVLEIQQYAREPISLDQTIG 398
>gi|359462082|ref|ZP_09250645.1| RNA polymerase sigma factor SigC [Acaryochloris sp. CCMEE 5410]
Length = 423
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 133/237 (56%), Gaps = 24/237 (10%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRL----- 280
L T E + I + +L +R+ L+ G P+F +WA A + +L+ RL
Sbjct: 102 LETREEFLDSHPAIAEYARLTDVRDRLTAMLGHRPSFNRWAKEADIPVADLKPRLAEGKT 161
Query: 281 -----------------NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 323
GI K+ MI +N+RLV+S+AK YQ G+ L DL+QEG GL
Sbjct: 162 AWAEKAELSNAELDQIVKQGIKAKEHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGL 221
Query: 324 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYS 383
R EKFD +KG++FSTYA+WWI+Q + ++++ QSRTIRLP H+ E ++K+A+++L
Sbjct: 222 ERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKLSQ 281
Query: 384 ENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFILNLAD 440
GR + E++A+ ++ +++ +L+ + PRS+ +I + ++ + +L D
Sbjct: 282 SKGRTASIEDIAQEMDMTPEQIRELLV--RVPRSVSLEIKVGKDKDTELGDLLETDD 336
>gi|441513656|ref|ZP_20995484.1| RNA polymerase sigma factor SigA [Gordonia amicalis NBRC 100051]
gi|441451602|dbj|GAC53445.1| RNA polymerase sigma factor SigA [Gordonia amicalis NBRC 100051]
Length = 472
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/255 (34%), Positives = 141/255 (55%), Gaps = 19/255 (7%)
Query: 174 RKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEM 233
+++ +T A K+ V + R+ R + +D +R LL A EE+
Sbjct: 132 KESAKTEPAAKSGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEV 191
Query: 234 QLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKD 288
+L+ I+ L E LR ++ G + AQ +R LN+ G K+
Sbjct: 192 ELAKRIEAGLFATERLRRMMD--SGEKISTAQ------------KRDLNWISRDGNRAKN 237
Query: 289 KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ 348
++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+Q
Sbjct: 238 HLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQ 297
Query: 349 AVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAV 408
A+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++ +
Sbjct: 298 AITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEI 357
Query: 409 LLSPKAPRSLDQKIG 423
+ P SLDQ IG
Sbjct: 358 QQYAREPISLDQTIG 372
>gi|256376033|ref|YP_003099693.1| RpoD subfamily RNA polymerase sigma-70 subunit [Actinosynnema mirum
DSM 43827]
gi|255920336|gb|ACU35847.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Actinosynnema
mirum DSM 43827]
Length = 320
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/231 (40%), Positives = 136/231 (58%), Gaps = 15/231 (6%)
Query: 193 KSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL 252
K + R+R S Q D +YLR S+ LLTA EE+ LS I+ + E L
Sbjct: 5 KPNADQSRRRASEQAADADLFGQYLRQVGSTP-LLTAAEEVVLSRRIEAGVYAEHLL--- 60
Query: 253 SERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
+PT A+ +R L + + G KD MI +N+RLV+S+AK + G+ L
Sbjct: 61 ---ADTAPTPAR--------RRALNQVVADGRDAKDHMIRANLRLVVSVAKKHSFRGLPL 109
Query: 313 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY 372
D+VQEG GL+R EKFD SKG+KFSTYA WWI+QA+ + L++Q+RT+RLP H+VE
Sbjct: 110 LDVVQEGNLGLIRAVEKFDYSKGYKFSTYAIWWIRQAIERGLAEQTRTVRLPVHVVEELS 169
Query: 373 RVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
++K+A ++L +E R P EE+A ATGL R+ + + +A SL+ +G
Sbjct: 170 KIKKAERKLRAELDREPTVEELAGATGLRAPRVAELRDAGRATISLETPVG 220
>gi|427722866|ref|YP_007070143.1| RNA polymerase, sigma subunit, RpsC/SigC [Leptolyngbya sp. PCC
7376]
gi|427354586|gb|AFY37309.1| RNA polymerase, sigma subunit, RpsC/SigC [Leptolyngbya sp. PCC
7376]
Length = 396
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 126/222 (56%), Gaps = 24/222 (10%)
Query: 242 LLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRR---------------------- 279
LKL + + L+ G PT +WAA +D+ LR++
Sbjct: 91 FLKLIEVHDRLAIELGCRPTMGRWAAEVDLDREVLRQKIREGKQHWAACVDLDIKEIEAV 150
Query: 280 LNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFS 339
L G K+ MI +N+RLV+S+AK YQ G+ L DL+QEG GL R +KFD +KG++FS
Sbjct: 151 LKAGAKAKEHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVDKFDPTKGYRFS 210
Query: 340 TYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATG 399
TYA+WWI+Q + ++++ QSRTIRLP H+ E ++K+A++Q+ G P+ E+VA+
Sbjct: 211 TYAYWWIRQGITRAIATQSRTIRLPVHVTEKLNKIKKAQRQISQTQGCTPSLEDVAKVLN 270
Query: 400 LSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFILNLADS 441
++ ++ VL K PRS+ +I + Q+ + +L D+
Sbjct: 271 MTAAQVREVL--QKVPRSVSLEIRVGQDRDTELGDLLETKDA 310
>gi|359771709|ref|ZP_09275155.1| RNA polymerase sigma factor SigB [Gordonia effusa NBRC 100432]
gi|359311145|dbj|GAB17933.1| RNA polymerase sigma factor SigB [Gordonia effusa NBRC 100432]
Length = 329
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 138/241 (57%), Gaps = 20/241 (8%)
Query: 201 KRPSVQEVDY------SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSE 254
KRP + E D +D +R + LL A +E++L+ I+ L + VL+
Sbjct: 14 KRPPMTEQDLDAQSPSADLVRVYLNGIGRTALLNAEQEVELAKQIETGLYA---KHVLAT 70
Query: 255 RCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQD 314
R + V +R+L + + G + ++ +N+RLV+S+AK Y G GM L D
Sbjct: 71 R----------KRLSAVKKRDLAQIIREGEAARAHLLEANLRLVVSLAKRYTGRGMPLLD 120
Query: 315 LVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRV 374
L+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++
Sbjct: 121 LIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKL 180
Query: 375 KEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCF 434
+++L+ + GR ++E+A +G+ +++ +L + P SLD +G ++ P F
Sbjct: 181 ARIKRELHQQLGREATDDELAAESGIPAEKIADLLDHSRDPVSLDMPVGTDEE-APLGDF 239
Query: 435 I 435
I
Sbjct: 240 I 240
>gi|145295815|ref|YP_001138636.1| RNA polymerase sigma factor [Corynebacterium glutamicum R]
gi|140845735|dbj|BAF54734.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 494
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 129/228 (56%), Gaps = 3/228 (1%)
Query: 196 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 255
+T R+ R + +D +R LL A +E+ L+ I+ L E + E
Sbjct: 170 ATLRQARKDAELTASADSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYATHRMEEMEEA 229
Query: 256 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 315
A+ A +R+LR G K+ ++ +N+RLV+S+AK Y G GM DL
Sbjct: 230 FAAGDKDAKLTPAV---KRDLRAIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDL 286
Query: 316 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVK 375
+QEG GL+R EKFD SKG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++
Sbjct: 287 IQEGNLGLIRAVEKFDYSKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLG 346
Query: 376 EARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
+++L E GR P +E+++ +S +++ + + P SLDQ IG
Sbjct: 347 RIQRELLQELGREPTPQELSKEMDISEEKVLEIQQYAREPISLDQTIG 394
>gi|23978350|dbj|BAC21142.1| principal sigma factor [Xenococcus sp. PCC 7307]
Length = 203
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 95/137 (69%)
Query: 291 ITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAV 350
+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+
Sbjct: 1 VQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAI 60
Query: 351 RKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 410
++++DQSRTIRLP H+ E R+K+ K L E GR P EE+A +++++L +
Sbjct: 61 TRAIADQSRTIRLPVHLYETISRIKKTTKLLSQERGRKPTEEEIATRMEMTIEKLRFIAK 120
Query: 411 SPKAPRSLDQKIGINQN 427
S + P SL+ IG ++
Sbjct: 121 SAQLPISLETPIGKEED 137
>gi|417971564|ref|ZP_12612487.1| RNA polymerase sigma factor [Corynebacterium glutamicum S9114]
gi|344044046|gb|EGV39727.1| RNA polymerase sigma factor [Corynebacterium glutamicum S9114]
Length = 494
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 129/228 (56%), Gaps = 3/228 (1%)
Query: 196 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 255
+T R+ R + +D +R LL A +E+ L+ I+ L E + E
Sbjct: 170 ATLRQARKDAELTASADSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYATHRMEEMEEA 229
Query: 256 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 315
A+ A +R+LR G K+ ++ +N+RLV+S+AK Y G GM DL
Sbjct: 230 FAAGDKDAKLTPAV---KRDLRAIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDL 286
Query: 316 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVK 375
+QEG GL+R EKFD SKG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++
Sbjct: 287 IQEGNLGLIRAVEKFDYSKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLG 346
Query: 376 EARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
+++L E GR P +E+++ +S +++ + + P SLDQ IG
Sbjct: 347 RIQRELLQELGREPTPQELSKEMDISEEKVLEIQQYAREPISLDQTIG 394
>gi|1149588|emb|CAA89984.1| SigA sigma factor [Corynebacterium glutamicum]
Length = 497
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 129/228 (56%), Gaps = 3/228 (1%)
Query: 196 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 255
+T R+ R + +D +R LL A +E+ L+ I+ L E + E
Sbjct: 173 ATLRQARKDAELTASADSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYATHRMEEMEEA 232
Query: 256 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 315
A+ A +R+LR G K+ ++ +N+RLV+S+AK Y G GM DL
Sbjct: 233 FAAGDKDAKLTPAV---KRDLRAIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDL 289
Query: 316 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVK 375
+QEG GL+R EKFD SKG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++
Sbjct: 290 IQEGNLGLIRAVEKFDYSKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLG 349
Query: 376 EARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
+++L E GR P +E+++ +S +++ + + P SLDQ IG
Sbjct: 350 RIQRELLQELGREPTPQELSKEMDISEEKVLEIQQYAREPISLDQTIG 397
>gi|158335266|ref|YP_001516438.1| RNA polymerase sigma factor SigC [Acaryochloris marina MBIC11017]
gi|158305507|gb|ABW27124.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 423
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 134/237 (56%), Gaps = 24/237 (10%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRL----- 280
L T E ++ I + +L +R+ L+ G P+F +WA A + +L+ RL
Sbjct: 102 LETREEFLESHPVIAEYARLTDVRDRLTAMLGHRPSFNRWAKEADIPVADLKPRLAEGKT 161
Query: 281 -----------------NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 323
GI K+ MI +N+RLV+S+AK YQ G+ L DL+QEG GL
Sbjct: 162 AWAEKAELSNAELDQIVKQGIKAKEHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGL 221
Query: 324 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYS 383
R EKFD +KG++FSTYA+WWI+Q + ++++ QSRTIRLP H+ E ++K+A+++L
Sbjct: 222 ERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKLSQ 281
Query: 384 ENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFILNLAD 440
GR + E++A+ ++ +++ +L+ + PRS+ +I + ++ + +L D
Sbjct: 282 SKGRTASIEDIAQEMDMTPEQIRELLV--RVPRSVSLEIKVGKDKDTELGDLLETDD 336
>gi|433631804|ref|YP_007265432.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070010]
gi|432163397|emb|CCK60805.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070010]
Length = 520
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 119/198 (60%), Gaps = 9/198 (4%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L LSER P +R++ G
Sbjct: 232 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLP---------AAQRRDMMWICRDGDR 282
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 283 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 342
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 343 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 402
Query: 406 HAVLLSPKAPRSLDQKIG 423
+ + P SLDQ IG
Sbjct: 403 LEIQQYAREPISLDQTIG 420
>gi|284990384|ref|YP_003408938.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geodermatophilus
obscurus DSM 43160]
gi|284063629|gb|ADB74567.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geodermatophilus
obscurus DSM 43160]
Length = 429
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/203 (39%), Positives = 121/203 (59%), Gaps = 19/203 (9%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 282
LL A EE+ L+ I+ L E LR+ E SP ++RR LN+
Sbjct: 141 LLNAEEEVDLAKRIEAGLYGAERLRQAEEEGQKLSP--------------QMRRDLNWIV 186
Query: 283 --GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 340
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFST
Sbjct: 187 RDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 246
Query: 341 YAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGL 400
YA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ +
Sbjct: 247 YATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDI 306
Query: 401 SMKRLHAVLLSPKAPRSLDQKIG 423
+ ++ + + P SLDQ IG
Sbjct: 307 TPDKVLEIQQYAREPISLDQTIG 329
>gi|62390750|ref|YP_226152.1| RNA polymerase sigma factor [Corynebacterium glutamicum ATCC 13032]
gi|41326088|emb|CAF20251.1| RNA POLYMERASE SIGMA 70 FACTOR [Corynebacterium glutamicum ATCC
13032]
Length = 494
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 129/228 (56%), Gaps = 3/228 (1%)
Query: 196 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 255
+T R+ R + +D +R LL A +E+ L+ I+ L E + E
Sbjct: 170 ATLRQARKDAELTASADSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYATHRMEEMEEA 229
Query: 256 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 315
A+ A +R+LR G K+ ++ +N+RLV+S+AK Y G GM DL
Sbjct: 230 FAAGDKDAKLTPAV---KRDLRAIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDL 286
Query: 316 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVK 375
+QEG GL+R EKFD SKG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++
Sbjct: 287 IQEGNLGLIRAVEKFDYSKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLG 346
Query: 376 EARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
+++L E GR P +E+++ +S +++ + + P SLDQ IG
Sbjct: 347 RIQRELLQELGREPTPQELSKEMDISEEKVLEIQQYAREPISLDQTIG 394
>gi|16331621|ref|NP_442349.1| RNA polymerase sigma factor SigC [Synechocystis sp. PCC 6803]
gi|383323363|ref|YP_005384217.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383326532|ref|YP_005387386.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383492416|ref|YP_005410093.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384437684|ref|YP_005652409.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451815773|ref|YP_007452225.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|2500787|sp|Q59996.1|RPSC_SYNY3 RecName: Full=Probable RNA polymerase sigma-C factor
gi|1001684|dbj|BAA10419.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339274717|dbj|BAK51204.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359272683|dbj|BAL30202.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359275853|dbj|BAL33371.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359279023|dbj|BAL36540.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|451781742|gb|AGF52711.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 404
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 106/163 (65%), Gaps = 2/163 (1%)
Query: 265 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV 324
WA AG+ EL GI K MI +N+RLV+S+AK YQ G+ L DL+QEG GL
Sbjct: 144 WAELAGLTVEELENIEKQGITAKAHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLE 203
Query: 325 RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSE 384
R EKFD +KG++FSTY++WWI+Q + ++++ QSR IRLP H+ E ++K A++++ E
Sbjct: 204 RAVEKFDPTKGYRFSTYSYWWIRQGITRAIATQSRMIRLPVHITEKLNKIKRAQRKISQE 263
Query: 385 NGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
G P +EVAE G++ +++ VL + PRS+ ++ + Q+
Sbjct: 264 KGHTPKIDEVAEELGMTPEQVREVL--TQVPRSVSLELKVGQD 304
>gi|218438398|ref|YP_002376727.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218171126|gb|ACK69859.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 295
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 92/129 (71%)
Query: 280 LNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFS 339
+ G K KMI++N+RLV+SIAK YQ G++ DL+QEG GL+RG EKFD SKG+KFS
Sbjct: 54 IQQGKRAKRKMISANLRLVVSIAKKYQRRGLSFLDLIQEGSIGLIRGVEKFDPSKGYKFS 113
Query: 340 TYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATG 399
TYA+WWI+QA+ ++++DQSRTIRLP H+ E+ ++K +QL E GR P EE+A
Sbjct: 114 TYAYWWIRQAMTRAIADQSRTIRLPSHLTESLNKLKRITRQLTGELGRRPTEEEIATELE 173
Query: 400 LSMKRLHAV 408
+SM L +
Sbjct: 174 ISMNELRTI 182
>gi|303233350|ref|ZP_07320019.1| RNA polymerase sigma factor RpoD [Atopobium vaginae PB189-T1-4]
gi|302480479|gb|EFL43570.1| RNA polymerase sigma factor RpoD [Atopobium vaginae PB189-T1-4]
Length = 441
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 118/218 (54%), Gaps = 21/218 (9%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG- 270
DP+R LLTA++E+ L+ I+ G T A G
Sbjct: 138 DPVRMYLKEIGKVDLLTADDEVHLAMKIE---------------AGNKATEQLEKAEKGE 182
Query: 271 -----VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 325
+ R L R G+ K + ++N+RL +SIAK Y G GM DL+QEG GL+R
Sbjct: 183 IELSRSEMRRLMREEQVGLDAKQALTSANLRLTVSIAKRYVGRGMLFLDLIQEGNLGLIR 242
Query: 326 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSEN 385
EKFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL E
Sbjct: 243 AVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLLQEL 302
Query: 386 GRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
GR P+ EE+ + +S ++ + + P SL+ IG
Sbjct: 303 GRDPSPEEIGKEMNMSPDKIREIQKISQEPVSLETPIG 340
>gi|12958492|gb|AAK09321.1|AF320817_2 sigma factor SigA [[Brevibacterium] flavum]
Length = 498
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 129/228 (56%), Gaps = 3/228 (1%)
Query: 196 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 255
+T R+ R + +D +R LL A +E+ L+ I+ L E + E
Sbjct: 174 ATLRQARKDAELTASADSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYATHRMEEMEEA 233
Query: 256 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 315
A+ A +R+LR G K+ ++ +N+RLV+S+AK Y G GM DL
Sbjct: 234 FAAGDKDAKLTPAV---RRDLRAIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDL 290
Query: 316 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVK 375
+QEG GL+R EKFD SKG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++
Sbjct: 291 IQEGNLGLIRAVEKFDYSKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLG 350
Query: 376 EARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
+++L E GR P +E+++ +S +++ + + P SLDQ IG
Sbjct: 351 RIQRELLQELGREPTPQELSKEMDISEEKVLEIQQYAREPISLDQTIG 398
>gi|26665382|dbj|BAC44902.1| principal sigma factor [Anabaena planctonica TAC421]
Length = 203
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 96/137 (70%)
Query: 291 ITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAV 350
+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+
Sbjct: 1 VQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAI 60
Query: 351 RKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 410
++++DQSRTIRLP H+ E R+K+ K L E GR P EE+A +++++L +
Sbjct: 61 TRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAK 120
Query: 411 SPKAPRSLDQKIGINQN 427
S ++P SL+ IG ++
Sbjct: 121 SAQSPISLETPIGKEED 137
>gi|428306280|ref|YP_007143105.1| RNA polymerase, sigma subunit, RpsC/SigC [Crinalium epipsammum PCC
9333]
gi|428247815|gb|AFZ13595.1| RNA polymerase, sigma subunit, RpsC/SigC [Crinalium epipsammum PCC
9333]
Length = 422
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 110/176 (62%), Gaps = 2/176 (1%)
Query: 265 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV 324
WA AG+ +L + G+ K+ MI +N+RLV+S+AK YQ G+ L DL+QEG GL
Sbjct: 162 WAEVAGLTVPDLEQIQKEGLQAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTMGLE 221
Query: 325 RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSE 384
R EKFD +KG++FSTYA+WWI+Q + ++++ QSRTIRLP H+ E ++K+ ++QL
Sbjct: 222 RAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKVQRQLSQT 281
Query: 385 NGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFILNLAD 440
G P EE+A A ++ ++ VLL + PRS+ +I + + + +L D
Sbjct: 282 QGHTPTIEEIAAALEMTPPQVREVLL--RVPRSVSLEIKVGKEKDTELGDLLEAED 335
>gi|443673296|ref|ZP_21138364.1| RNA polymerase sigma factor [Rhodococcus sp. AW25M09]
gi|443414111|emb|CCQ16702.1| RNA polymerase sigma factor [Rhodococcus sp. AW25M09]
Length = 323
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/248 (35%), Positives = 142/248 (57%), Gaps = 22/248 (8%)
Query: 194 SGSTSRRKRPSVQEVDYSDP----LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGL- 248
S ST+ R RP+ ++D P +R + LLTA EE+ L+ I+ GL
Sbjct: 3 SPSTTIRPRPTDADLDAQSPAADLVRVYLNGIGRTALLTAAEEVDLAKRIE-----AGLY 57
Query: 249 -REVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQG 307
++VL + V +R L + G + ++ +N+RLV+S+AK Y G
Sbjct: 58 AKQVLE----------NTKRLSAVKKRNLAIIVRDGSSARSHLLEANLRLVVSLAKRYTG 107
Query: 308 AGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHM 367
GM L DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+
Sbjct: 108 RGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHL 167
Query: 368 VEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
VE ++ +++L+ + GR ++E++ +G++++++ +L + P SLD +G ++
Sbjct: 168 VEQVNKLARIKRELHQQLGREATDDELSSESGIAVEKIADLLDHSRDPVSLDMPVGSDEE 227
Query: 428 LKPSVCFI 435
P FI
Sbjct: 228 -APLGDFI 234
>gi|169630111|ref|YP_001703760.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus ATCC
19977]
gi|365870954|ref|ZP_09410495.1| RNA polymerase sigma factor SigB [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|397679875|ref|YP_006521410.1| RNA polymerase sigma factor sigB [Mycobacterium massiliense str. GO
06]
gi|414582578|ref|ZP_11439718.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1215]
gi|418247832|ref|ZP_12874218.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus 47J26]
gi|418421133|ref|ZP_12994309.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus subsp.
bolletii BD]
gi|419709733|ref|ZP_14237201.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus M93]
gi|420881197|ref|ZP_15344564.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0304]
gi|420884840|ref|ZP_15348200.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0421]
gi|420889538|ref|ZP_15352886.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0422]
gi|420897176|ref|ZP_15360515.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0708]
gi|420899659|ref|ZP_15362991.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0817]
gi|420905543|ref|ZP_15368861.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1212]
gi|420910637|ref|ZP_15373949.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-R]
gi|420917089|ref|ZP_15380393.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-S]
gi|420922254|ref|ZP_15385551.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-S]
gi|420927916|ref|ZP_15391198.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-1108]
gi|420932132|ref|ZP_15395407.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-151-0930]
gi|420938383|ref|ZP_15401652.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-152-0914]
gi|420942390|ref|ZP_15405647.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-153-0915]
gi|420946950|ref|ZP_15410200.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-154-0310]
gi|420952649|ref|ZP_15415893.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0626]
gi|420956818|ref|ZP_15420055.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0107]
gi|420961864|ref|ZP_15425089.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-1231]
gi|420967525|ref|ZP_15430729.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0810-R]
gi|420972741|ref|ZP_15435934.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0921]
gi|420978256|ref|ZP_15441434.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0212]
gi|420983641|ref|ZP_15446808.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-R]
gi|420992777|ref|ZP_15455924.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0307]
gi|420998629|ref|ZP_15461766.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-R]
gi|421003066|ref|ZP_15466190.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-S]
gi|421007918|ref|ZP_15471029.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0119-R]
gi|421013609|ref|ZP_15476690.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-R]
gi|421018559|ref|ZP_15481617.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-S]
gi|421024676|ref|ZP_15487720.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0731]
gi|421029721|ref|ZP_15492753.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-R]
gi|421035126|ref|ZP_15498146.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-S]
gi|421050031|ref|ZP_15513025.1| RNA polymerase sigma factor [Mycobacterium massiliense CCUG 48898 =
JCM 15300]
gi|169242078|emb|CAM63106.1| RNA polymerase sigma factor [Mycobacterium abscessus]
gi|353452325|gb|EHC00719.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus 47J26]
gi|363994757|gb|EHM15975.1| RNA polymerase sigma factor SigB [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|363997600|gb|EHM18811.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus subsp.
bolletii BD]
gi|382943614|gb|EIC67928.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus M93]
gi|392080603|gb|EIU06429.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0421]
gi|392086106|gb|EIU11931.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0304]
gi|392087286|gb|EIU13108.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0422]
gi|392096488|gb|EIU22283.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0708]
gi|392101006|gb|EIU26797.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0817]
gi|392103447|gb|EIU29233.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1212]
gi|392112631|gb|EIU38400.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-R]
gi|392117730|gb|EIU43498.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1215]
gi|392121229|gb|EIU46995.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-S]
gi|392132090|gb|EIU57836.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-S]
gi|392135149|gb|EIU60890.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-1108]
gi|392136891|gb|EIU62628.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-151-0930]
gi|392143898|gb|EIU69623.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-152-0914]
gi|392149817|gb|EIU75531.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-153-0915]
gi|392153980|gb|EIU79686.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-154-0310]
gi|392157961|gb|EIU83658.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0626]
gi|392165633|gb|EIU91319.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0921]
gi|392166530|gb|EIU92215.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0212]
gi|392168637|gb|EIU94315.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-R]
gi|392185561|gb|EIV11210.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0307]
gi|392186441|gb|EIV12088.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-R]
gi|392194524|gb|EIV20144.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-S]
gi|392199371|gb|EIV24981.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0119-R]
gi|392201957|gb|EIV27555.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-R]
gi|392208434|gb|EIV34008.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-S]
gi|392211473|gb|EIV37039.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0731]
gi|392224473|gb|EIV49993.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-R]
gi|392225858|gb|EIV51373.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-S]
gi|392238634|gb|EIV64127.1| RNA polymerase sigma factor [Mycobacterium massiliense CCUG 48898]
gi|392249329|gb|EIV74804.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-1231]
gi|392250032|gb|EIV75506.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0810-R]
gi|392253717|gb|EIV79185.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0107]
gi|395458140|gb|AFN63803.1| RNA polymerase sigma factor sigB [Mycobacterium massiliense str. GO
06]
Length = 323
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 104/153 (67%), Gaps = 1/153 (0%)
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 342
G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD +KGFKFSTYA
Sbjct: 83 GNAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYA 142
Query: 343 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSM 402
WWI+QA+ + ++DQSRTIRLP H+VE ++ +++L+ GR ++EE+AE +G+ +
Sbjct: 143 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQRLGREASDEELAEESGIPV 202
Query: 403 KRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
+++ +L + P SLD +G ++ P FI
Sbjct: 203 EKIGDLLDHSRDPVSLDMPVGTDEE-APLGDFI 234
>gi|443627733|ref|ZP_21112109.1| putative RNA polymerase sigma factor [Streptomyces
viridochromogenes Tue57]
gi|443338746|gb|ELS53012.1| putative RNA polymerase sigma factor [Streptomyces
viridochromogenes Tue57]
Length = 430
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 119/198 (60%), Gaps = 13/198 (6%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE++L+ ++ L E E+ G +P A +L R + G +
Sbjct: 146 LLTAAEEVELARRVEAGLFAE-------EKLGNTPDLDSELAL------DLDRLVVMGRM 192
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G+KFSTYA WW
Sbjct: 193 AKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWW 252
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++L+DQ+RTIR+P H+VE RV ++++ E G P EEVA L +R+
Sbjct: 253 IRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPEEVAAHLDLPPERV 312
Query: 406 HAVLLSPKAPRSLDQKIG 423
VL + P SL +G
Sbjct: 313 SEVLRLAQEPVSLHAPVG 330
>gi|433642889|ref|YP_007288648.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070008]
gi|432159437|emb|CCK56741.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070008]
Length = 528
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 119/198 (60%), Gaps = 9/198 (4%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L LSER P +R++ G
Sbjct: 240 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLP---------AAQRRDMMWICRDGDR 290
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 291 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 350
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 351 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 410
Query: 406 HAVLLSPKAPRSLDQKIG 423
+ + P SLDQ IG
Sbjct: 411 LEIQQYAREPISLDQTIG 428
>gi|407960748|dbj|BAM53988.1| RNA polymerase sigma factor SigC [Synechocystis sp. PCC 6803]
Length = 385
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 106/163 (65%), Gaps = 2/163 (1%)
Query: 265 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV 324
WA AG+ EL GI K MI +N+RLV+S+AK YQ G+ L DL+QEG GL
Sbjct: 125 WAELAGLTVEELENIEKQGITAKAHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLE 184
Query: 325 RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSE 384
R EKFD +KG++FSTY++WWI+Q + ++++ QSR IRLP H+ E ++K A++++ E
Sbjct: 185 RAVEKFDPTKGYRFSTYSYWWIRQGITRAIATQSRMIRLPVHITEKLNKIKRAQRKISQE 244
Query: 385 NGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
G P +EVAE G++ +++ VL + PRS+ ++ + Q+
Sbjct: 245 KGHTPKIDEVAEELGMTPEQVREVL--TQVPRSVSLELKVGQD 285
>gi|308371101|ref|ZP_07423832.2| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu003]
gi|308379284|ref|ZP_07485758.2| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu010]
gi|308405944|ref|ZP_07494511.2| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu012]
gi|422813752|ref|ZP_16862124.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CDC1551A]
gi|308329814|gb|EFP18665.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu003]
gi|308357496|gb|EFP46347.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu010]
gi|308365045|gb|EFP53896.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu012]
gi|323718698|gb|EGB27860.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CDC1551A]
gi|379029013|dbj|BAL66746.1| RNA polymerase sigma factor [Mycobacterium tuberculosis str. Erdman
= ATCC 35801]
Length = 530
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 119/198 (60%), Gaps = 9/198 (4%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L LSER P +R++ G
Sbjct: 242 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLP---------AAQRRDMMWICRDGDR 292
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 293 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 352
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 353 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 412
Query: 406 HAVLLSPKAPRSLDQKIG 423
+ + P SLDQ IG
Sbjct: 413 LEIQQYAREPISLDQTIG 430
>gi|410582688|ref|ZP_11319794.1| RNA polymerase, sigma 70 subunit, RpoD [Thermaerobacter
subterraneus DSM 13965]
gi|410505508|gb|EKP95017.1| RNA polymerase, sigma 70 subunit, RpoD [Thermaerobacter
subterraneus DSM 13965]
Length = 432
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/154 (46%), Positives = 104/154 (67%), Gaps = 1/154 (0%)
Query: 275 ELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G K K+I +N+RLV+SIAK Y G GM DL+QEG GL++ AEKFD
Sbjct: 183 ELAKRIEQGDEEAKRKLIQANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAAEKFDYR 242
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL E GR P EE
Sbjct: 243 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLVQELGREPTPEE 302
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
+A+ G+ +++ ++ + P SL+ IG ++
Sbjct: 303 IAKEMGIEPEKVREIMKIAQEPVSLETPIGEEED 336
>gi|13195265|gb|AAK15630.1|AF326348_2 RNA polymerase major sigma subunit [Corynebacterium ammoniagenes]
Length = 467
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 137/243 (56%), Gaps = 11/243 (4%)
Query: 185 AAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLS----AGIQ 240
A A+V +T R+ R Q +D +R LL A +E+ L+ AG+
Sbjct: 132 AGASVWDEDESATLRQARKDAQLTASADSVRAYLKQIGKVALLNAEQEVSLAERIEAGLY 191
Query: 241 DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVIS 300
+L+ + +++E A + +R+LR G K+ ++ +N+RLV+S
Sbjct: 192 AQHRLDEMERLIAEGDAA-------AKLSPAQKRDLRWIARDGRKAKNHLLEANLRLVVS 244
Query: 301 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 360
+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RT
Sbjct: 245 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 304
Query: 361 IRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQ 420
IR+P HMVE ++ +++L + GR P +E+A+ ++ +++ + + P SLDQ
Sbjct: 305 IRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITEEKVLEIQQYAREPISLDQ 364
Query: 421 KIG 423
IG
Sbjct: 365 TIG 367
>gi|443329181|ref|ZP_21057769.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442791126|gb|ELS00625.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 417
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 108/164 (65%), Gaps = 2/164 (1%)
Query: 263 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 322
A WA G + EL + GI K+ MI +N+RLV+S+AK YQ G+ L DL+QEG G
Sbjct: 155 ASWAQVTGCEVNELEKIQKDGIRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLG 214
Query: 323 LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLY 382
L R EKFD +KG++FSTYA+WWI+Q + ++++ QSRTIRLP H+ E ++K+A++++
Sbjct: 215 LERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKIS 274
Query: 383 SENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQ 426
E GR P E+++ ++ ++ VLL + PRS+ +I + +
Sbjct: 275 QEKGRTPCIEDLSLELDMTAAQIREVLL--RVPRSVSLEIKVGK 316
>gi|1072021|gb|AAA81642.1| sigma factor [Mycobacterium bovis]
Length = 528
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 119/198 (60%), Gaps = 9/198 (4%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L LSER P +R++ G
Sbjct: 240 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLP---------AAQRRDMMWICRDGDR 290
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 291 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 350
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 351 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 410
Query: 406 HAVLLSPKAPRSLDQKIG 423
+ + P SLDQ IG
Sbjct: 411 LEIQQYAREPISLDQTIG 428
>gi|15609840|ref|NP_217219.1| RNA polymerase sigma factor SigA (sigma-A) [Mycobacterium
tuberculosis H37Rv]
gi|15842241|ref|NP_337278.1| RNA polymerase sigma factor [Mycobacterium tuberculosis CDC1551]
gi|31793875|ref|NP_856368.1| RNA polymerase sigma factor [Mycobacterium bovis AF2122/97]
gi|121638578|ref|YP_978802.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148662544|ref|YP_001284067.1| RNA polymerase sigma factor [Mycobacterium tuberculosis H37Ra]
gi|148823893|ref|YP_001288647.1| RNA polymerase sigma factor [Mycobacterium tuberculosis F11]
gi|167970074|ref|ZP_02552351.1| RNA polymerase sigma factor RpoD [Mycobacterium tuberculosis H37Ra]
gi|224991070|ref|YP_002645759.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Tokyo
172]
gi|253798215|ref|YP_003031216.1| RNA polymerase sigma factor [Mycobacterium tuberculosis KZN 1435]
gi|254551759|ref|ZP_05142206.1| RNA polymerase sigma factor [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|289448358|ref|ZP_06438102.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CPHL_A]
gi|289762874|ref|ZP_06522252.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis GM
1503]
gi|294994205|ref|ZP_06799896.1| RNA polymerase sigma factor [Mycobacterium tuberculosis 210]
gi|297635311|ref|ZP_06953091.1| RNA polymerase sigma factor [Mycobacterium tuberculosis KZN 4207]
gi|297732307|ref|ZP_06961425.1| RNA polymerase sigma factor [Mycobacterium tuberculosis KZN R506]
gi|306780885|ref|ZP_07419222.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu002]
gi|306790106|ref|ZP_07428428.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu004]
gi|306798608|ref|ZP_07436910.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu006]
gi|306804467|ref|ZP_07441135.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu008]
gi|306807495|ref|ZP_07444163.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu007]
gi|306968762|ref|ZP_07481423.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu009]
gi|307080806|ref|ZP_07489976.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu011]
gi|313659640|ref|ZP_07816520.1| RNA polymerase sigma factor [Mycobacterium tuberculosis KZN V2475]
gi|340627704|ref|YP_004746156.1| RNA polymerase sigma factor SIGA [Mycobacterium canettii CIPT
140010059]
gi|375295482|ref|YP_005099749.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis KZN
4207]
gi|378772433|ref|YP_005172166.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Mexico]
gi|383308467|ref|YP_005361278.1| RNA polymerase sigma factor [Mycobacterium tuberculosis RGTB327]
gi|385991988|ref|YP_005910286.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CCDC5180]
gi|385995609|ref|YP_005913907.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CCDC5079]
gi|385999483|ref|YP_005917782.1| RNA polymerase sigma factor [Mycobacterium tuberculosis CTRI-2]
gi|392387335|ref|YP_005308964.1| sigA [Mycobacterium tuberculosis UT205]
gi|392431690|ref|YP_006472734.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis KZN
605]
gi|397674612|ref|YP_006516147.1| RNA polymerase sigma factor rpoD [Mycobacterium tuberculosis H37Rv]
gi|424805043|ref|ZP_18230474.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis W-148]
gi|424948361|ref|ZP_18364057.1| RNA polymerase sigma factor [Mycobacterium tuberculosis NCGM2209]
gi|449064770|ref|YP_007431853.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Korea
1168P]
gi|61234251|sp|P0A602.1|RPOD_MYCTU RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A
gi|61234258|sp|P0A603.1|RPOD_MYCBO RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A
gi|1072023|gb|AAA81643.1| sigma factor [Mycobacterium bovis]
gi|1072025|gb|AAA81644.1| sigma factor [Mycobacterium tuberculosis str. Erdman = ATCC 35801]
gi|1171102|gb|AAA86043.1| sigma factor MysA [Mycobacterium tuberculosis H37Rv]
gi|13882532|gb|AAK47092.1| RNA polymerase principal sigma factor SigA [Mycobacterium
tuberculosis CDC1551]
gi|31619469|emb|CAD94907.1| RNA POLYMERASE SIGMA FACTOR SIGA (SIGMA-A) [Mycobacterium bovis
AF2122/97]
gi|121494226|emb|CAL72704.1| RNA polymerase sigma factor sigA [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148506696|gb|ABQ74505.1| RNA polymerase sigma factor [Mycobacterium tuberculosis H37Ra]
gi|148722420|gb|ABR07045.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis F11]
gi|224774185|dbj|BAH26991.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Tokyo
172]
gi|253319718|gb|ACT24321.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis KZN
1435]
gi|289421316|gb|EFD18517.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CPHL_A]
gi|289710380|gb|EFD74396.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis GM
1503]
gi|308326286|gb|EFP15137.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu002]
gi|308333457|gb|EFP22308.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu004]
gi|308341125|gb|EFP29976.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu006]
gi|308346090|gb|EFP34941.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu007]
gi|308348951|gb|EFP37802.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu008]
gi|308353649|gb|EFP42500.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu009]
gi|308361450|gb|EFP50301.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu011]
gi|326904319|gb|EGE51252.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis W-148]
gi|328457987|gb|AEB03410.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis KZN
4207]
gi|339295563|gb|AEJ47674.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CCDC5079]
gi|339299181|gb|AEJ51291.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CCDC5180]
gi|340005894|emb|CCC45060.1| RNA polymerase sigma factor SIGA (sigma-A) [Mycobacterium canettii
CIPT 140010059]
gi|341602616|emb|CCC65292.1| RNA polymerase sigma factor sigA [Mycobacterium bovis BCG str.
Moreau RDJ]
gi|344220530|gb|AEN01161.1| RNA polymerase sigma factor [Mycobacterium tuberculosis CTRI-2]
gi|356594754|gb|AET19983.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Mexico]
gi|358232876|dbj|GAA46368.1| RNA polymerase sigma factor [Mycobacterium tuberculosis NCGM2209]
gi|378545886|emb|CCE38164.1| sigA [Mycobacterium tuberculosis UT205]
gi|380722420|gb|AFE17529.1| RNA polymerase sigma factor [Mycobacterium tuberculosis RGTB327]
gi|392053099|gb|AFM48657.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis KZN
605]
gi|395139517|gb|AFN50676.1| RNA polymerase sigma factor rpoD [Mycobacterium tuberculosis H37Rv]
gi|440582180|emb|CCG12583.1| RNA POLYMERASE SIGMA FACTOR SIGA (SIGMA-A) [Mycobacterium
tuberculosis 7199-99]
gi|444896240|emb|CCP45501.1| RNA polymerase sigma factor SigA (sigma-A) [Mycobacterium
tuberculosis H37Rv]
gi|449033278|gb|AGE68705.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Korea
1168P]
Length = 528
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 119/198 (60%), Gaps = 9/198 (4%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L LSER P +R++ G
Sbjct: 240 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLP---------AAQRRDMMWICRDGDR 290
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 291 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 350
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 351 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 410
Query: 406 HAVLLSPKAPRSLDQKIG 423
+ + P SLDQ IG
Sbjct: 411 LEIQQYAREPISLDQTIG 428
>gi|443316869|ref|ZP_21046297.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783541|gb|ELR93453.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 443
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 124/214 (57%), Gaps = 26/214 (12%)
Query: 234 QLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG---VDQR---------------- 274
Q S ++ + L R+ L+ G P+ +WA AG VD +
Sbjct: 130 QASGPLERYVHLMDTRDRLTSHLGHRPSLERWAETAGISVVDLKPTLSSGKRHWAELASL 189
Query: 275 ---ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
EL + G+ K+ MI +N+RLV+S+AK YQ G+ L DL+QEG GL R EKFD
Sbjct: 190 TVAELEEAIREGLRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFD 249
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
+KG++FSTYA+WWI+Q + ++++ QSRTIRLP H+ E ++K+A++++ + GR P
Sbjct: 250 PTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQDQGRTPTL 309
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPR--SLDQKIG 423
++VA ++ ++ VLL + PR SL+ K+G
Sbjct: 310 DDVARELDMTAAQVREVLL--RVPRSVSLETKVG 341
>gi|335047747|ref|ZP_08540768.1| RNA polymerase sigma factor RpoD [Parvimonas sp. oral taxon 110
str. F0139]
gi|333761555|gb|EGL39110.1| RNA polymerase sigma factor RpoD [Parvimonas sp. oral taxon 110
str. F0139]
Length = 382
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 96/140 (68%)
Query: 284 ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH 343
I K K+ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +GFKFSTYA
Sbjct: 143 IEAKKKLAETNLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDFRRGFKFSTYAT 202
Query: 344 WWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMK 403
WWI+QA+ +S++DQ+RTIR+P HMVE ++ +QL E GR P NEE++E G+ ++
Sbjct: 203 WWIRQAITRSIADQARTIRIPVHMVETINKLVRIERQLVQELGREPTNEEISEHMGIEVE 262
Query: 404 RLHAVLLSPKAPRSLDQKIG 423
+++ + + P SL+ IG
Sbjct: 263 KVNEIRKIAQEPVSLETPIG 282
>gi|374989227|ref|YP_004964722.1| RNA polymerase principal sigma factor hrdD [Streptomyces
bingchenggensis BCW-1]
gi|297159879|gb|ADI09591.1| RNA polymerase principal sigma factor hrdD [Streptomyces
bingchenggensis BCW-1]
Length = 333
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/157 (46%), Positives = 103/157 (65%)
Query: 266 AAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 325
A AAG + EL G KD I SN+RLV+++A+ Y +G+ L DL+QEG GLVR
Sbjct: 77 APAAGASRGELEAIAAEGARAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVR 136
Query: 326 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSEN 385
EKFD +KGFKFSTYA WWI+QA+ +S++DQSRTIRLP H+VE R++ +++ E+
Sbjct: 137 AVEKFDYTKGFKFSTYATWWIRQAITRSIADQSRTIRLPVHLVEELGRIRRVQREFNREH 196
Query: 386 GRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKI 422
GR P + E+A G + +R+ VL + P SL+ +
Sbjct: 197 GREPEHSEIAAELGSTTERVSDVLDWARDPVSLNMSV 233
>gi|418244274|ref|ZP_12870697.1| RNA polymerase sigma factor [Corynebacterium glutamicum ATCC 14067]
gi|354511680|gb|EHE84586.1| RNA polymerase sigma factor [Corynebacterium glutamicum ATCC 14067]
Length = 494
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 129/228 (56%), Gaps = 3/228 (1%)
Query: 196 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 255
+T R+ R + +D +R LL A +E+ L+ I+ L E + E
Sbjct: 170 ATLRQARKDAELTASADSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYATHRMEEMEEA 229
Query: 256 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 315
A+ A +R+LR G K+ ++ +N+RLV+S+AK Y G GM DL
Sbjct: 230 FAAGDKDAKLTPAV---RRDLRAIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDL 286
Query: 316 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVK 375
+QEG GL+R EKFD SKG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++
Sbjct: 287 IQEGNLGLIRAVEKFDYSKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLG 346
Query: 376 EARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
+++L E GR P +E+++ +S +++ + + P SLDQ IG
Sbjct: 347 RIQRELLQELGREPTPQELSKEMDISEEKVLEIQQYAREPISLDQTIG 394
>gi|443321959|ref|ZP_21050996.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442788351|gb|ELR98047.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 353
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 123/199 (61%), Gaps = 1/199 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ-RELRRRLNYGI 284
LL EE+ L+ I+ L+K+E + L SPT A+ A ++ +L L G
Sbjct: 55 LLNPEEELTLAYQIKFLIKVEEQTQQLERELRRSPTKAELVTALALNSVGQLDNLLYQGR 114
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
+ K KMI SN+RLV+SIAK Y G+ DL+QEG GL R EKFD +KG+KFSTYA+W
Sbjct: 115 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAVGLNRATEKFDPNKGYKFSTYAYW 174
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+QA+ +++++ +RTIRLP H+VE ++K+A++ L + R+P EE+A +S +
Sbjct: 175 WIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRVLKQQLHRNPKEEEIATEMEISPLQ 234
Query: 405 LHAVLLSPKAPRSLDQKIG 423
L +L + SL+ +IG
Sbjct: 235 LRYLLELKRQSLSLNHRIG 253
>gi|78185801|ref|YP_378235.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
CC9902]
gi|78170095|gb|ABB27192.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. CC9902]
Length = 377
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 108/168 (64%), Gaps = 4/168 (2%)
Query: 262 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCR 321
+ WA A +D +EL+ L G KD MI +N+RLV+++AK YQ GM + DLVQEG
Sbjct: 113 YEAWAEKAAIDAKELKLSLRNGRRAKDHMIQANLRLVVAVAKKYQQRGMEILDLVQEGTL 172
Query: 322 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL 381
GL R EKFD ++GF+FSTYA+WWI+Q + ++++ QSRTIRLP H+ E R+K ++++
Sbjct: 173 GLERAVEKFDPTRGFRFSTYAYWWIRQGMTRAIATQSRTIRLPVHVTEKLNRIKRVQQEI 232
Query: 382 YSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR--SLDQKIGINQN 427
S GR + ++A G+S + L + PR SLD ++G +Q+
Sbjct: 233 ASNEGRIASIADLARELGISEDTVRQTL--ERVPRSVSLDSRVGKDQD 278
>gi|306836272|ref|ZP_07469254.1| RNA polymerase sigma factor rpoD [Corynebacterium accolens ATCC
49726]
gi|304567864|gb|EFM43447.1| RNA polymerase sigma factor rpoD [Corynebacterium accolens ATCC
49726]
Length = 492
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/289 (31%), Positives = 151/289 (52%), Gaps = 6/289 (2%)
Query: 136 EQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSG 195
EQ D +PTHE+++ E + Q E + ++V +
Sbjct: 109 EQDAPADDVDFDPTHEDIEEDEFDAPTDLD-EDDIQEELGEEEDEDEVEDTSSVWDEEES 167
Query: 196 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQ-DLLKLEGLREVLSE 254
R+ R Q +D +R LL A +E+ L+ I+ L + E+
Sbjct: 168 VALRQARKDAQLTASADSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYAQHRMDEMEKA 227
Query: 255 RCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQD 314
R G + A + +++R+LR G K+ ++ +N+RLV+S+AK Y G GM D
Sbjct: 228 RAEGD----KAAKLSPMEKRDLRSIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLD 283
Query: 315 LVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRV 374
L+QEG GL+R EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++
Sbjct: 284 LIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKL 343
Query: 375 KEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
+++L + GR P +E+A+ ++ +++ + + P SLDQ IG
Sbjct: 344 GRIQRELLQDLGREPTPQELAKEMDITEEKVMEIQQYAREPISLDQTIG 392
>gi|1072017|gb|AAA81640.1| sigma factor [Mycobacterium bovis]
gi|1072019|gb|AAA81641.1| sigma factor [Mycobacterium bovis]
Length = 528
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 119/198 (60%), Gaps = 9/198 (4%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L LSER P +R++ G
Sbjct: 240 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLP---------AAQRRDMMWICRDGDR 290
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 291 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 350
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 351 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 410
Query: 406 HAVLLSPKAPRSLDQKIG 423
+ + P SLDQ IG
Sbjct: 411 LEIQQYAREPISLDQTIG 428
>gi|407983270|ref|ZP_11163927.1| RNA polymerase sigma factor, sigma-70 family protein [Mycobacterium
hassiacum DSM 44199]
gi|407375163|gb|EKF24122.1| RNA polymerase sigma factor, sigma-70 family protein [Mycobacterium
hassiacum DSM 44199]
Length = 319
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 107/163 (65%), Gaps = 1/163 (0%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+REL + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 69 RRELEEVVRDGEEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 128
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ R++L+ GR +E
Sbjct: 129 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIRRELHQTLGREATDE 188
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
E+A +G+ + +++ +L + P SLD +G ++ P FI
Sbjct: 189 ELAAESGIPVDKINDLLEHSRDPVSLDMPVGTDEE-APLGDFI 230
>gi|433635765|ref|YP_007269392.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070017]
gi|432167358|emb|CCK64869.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070017]
Length = 528
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 119/198 (60%), Gaps = 9/198 (4%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L LSER P +R++ G
Sbjct: 240 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLP---------AAQRRDMMWICRDGDR 290
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 291 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 350
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 351 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 410
Query: 406 HAVLLSPKAPRSLDQKIG 423
+ + P SLDQ IG
Sbjct: 411 LEIQQYAREPISLDQTIG 428
>gi|359767847|ref|ZP_09271629.1| RNA polymerase sigma factor SigA [Gordonia polyisoprenivorans NBRC
16320]
gi|378717657|ref|YP_005282546.1| RNA polymerase sigma factor SigA [Gordonia polyisoprenivorans VH2]
gi|359314763|dbj|GAB24462.1| RNA polymerase sigma factor SigA [Gordonia polyisoprenivorans NBRC
16320]
gi|375752360|gb|AFA73180.1| RNA polymerase sigma factor SigA [Gordonia polyisoprenivorans VH2]
Length = 483
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 123/203 (60%), Gaps = 19/203 (9%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 282
LL A EE++L+ I+ L E LR ++ G + AQ +R LN+
Sbjct: 195 LLNAEEEVELAKRIEAGLFATERLRRIME--SGEKISTAQ------------KRDLNWIS 240
Query: 283 --GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 340
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFST
Sbjct: 241 RDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 300
Query: 341 YAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGL 400
YA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ +
Sbjct: 301 YATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDI 360
Query: 401 SMKRLHAVLLSPKAPRSLDQKIG 423
+ +++ + + P SLDQ IG
Sbjct: 361 TPEKVLEIQQYAREPISLDQTIG 383
>gi|256375646|ref|YP_003099306.1| RNA polymerase sigma factor [Actinosynnema mirum DSM 43827]
gi|255919949|gb|ACU35460.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Actinosynnema
mirum DSM 43827]
Length = 435
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/199 (39%), Positives = 121/199 (60%), Gaps = 11/199 (5%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 284
LL A EE++L+ I+ L E LR E +P +R+LR + G
Sbjct: 147 LLNAEEEVELAKRIEAGLYAAERLRRAEDESEKLTPQM----------RRDLRWIVRDGE 196
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA W
Sbjct: 197 RAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATW 256
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ ++
Sbjct: 257 WIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEK 316
Query: 405 LHAVLLSPKAPRSLDQKIG 423
+ + + P SLDQ IG
Sbjct: 317 VLEIQQYAREPISLDQTIG 335
>gi|212697198|ref|ZP_03305326.1| hypothetical protein ANHYDRO_01765 [Anaerococcus hydrogenalis DSM
7454]
gi|212675973|gb|EEB35580.1| hypothetical protein ANHYDRO_01765 [Anaerococcus hydrogenalis DSM
7454]
Length = 617
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 103/150 (68%), Gaps = 4/150 (2%)
Query: 278 RRLNYGIL----CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
+RLN I K K+ +N+RLV+SIAK Y G GM+ DL+QEG GL++ +K+D +
Sbjct: 369 KRLNRAIFDANRAKQKLAETNLRLVVSIAKKYVGRGMSFLDLIQEGNMGLMKAVDKYDYN 428
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
+GFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+NEE
Sbjct: 429 RGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLVQDLGRDPSNEE 488
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
+AE G+ ++++ + + P SL+ IG
Sbjct: 489 IAEQMGIEVEKVQEIRKIAQEPVSLETPIG 518
>gi|359419322|ref|ZP_09211280.1| RNA polymerase sigma factor SigB [Gordonia araii NBRC 100433]
gi|358244729|dbj|GAB09349.1| RNA polymerase sigma factor SigB [Gordonia araii NBRC 100433]
Length = 321
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/246 (35%), Positives = 141/246 (57%), Gaps = 22/246 (8%)
Query: 196 STSRRKRPSVQEVDYSDP----LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGL--R 249
+TS R P+ ++D P +R + LL A +E++L+ I+ GL +
Sbjct: 3 TTSVRPAPTESDLDAQSPSADLVRVYLNGIGRTALLNAEQEVELAKQIE-----AGLYAK 57
Query: 250 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 309
VL+ R P V +R+L + + G + ++ +N+RLV+S+AK Y G G
Sbjct: 58 HVLATRKRIGP----------VRKRDLNQIVREGEQARAHLLEANLRLVVSLAKRYTGRG 107
Query: 310 MNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVE 369
M L DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE
Sbjct: 108 MPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVE 167
Query: 370 ATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLK 429
++ +++L+ + GR ++E+A +G+ +++ +L + P SLD +G ++
Sbjct: 168 QVNKLARIKRELHQQLGREATDDELAAESGIPAEKIADLLDHSRDPVSLDMPVGSDEE-A 226
Query: 430 PSVCFI 435
P FI
Sbjct: 227 PLGDFI 232
>gi|419716788|ref|ZP_14244183.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus M94]
gi|420864424|ref|ZP_15327814.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0303]
gi|420869215|ref|ZP_15332597.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RA]
gi|420873659|ref|ZP_15337036.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RB]
gi|420987323|ref|ZP_15450479.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0206]
gi|421039706|ref|ZP_15502715.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-R]
gi|421044014|ref|ZP_15507015.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-S]
gi|382940349|gb|EIC64673.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus M94]
gi|392068685|gb|EIT94532.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RA]
gi|392071399|gb|EIT97245.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0303]
gi|392072687|gb|EIT98528.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RB]
gi|392181602|gb|EIV07253.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0206]
gi|392224798|gb|EIV50317.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-R]
gi|392237866|gb|EIV63360.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-S]
Length = 323
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 103/153 (67%), Gaps = 1/153 (0%)
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 342
G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD +KGFKFSTYA
Sbjct: 83 GNAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYA 142
Query: 343 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSM 402
WWI+QA+ + ++DQSRTIRLP H+VE ++ +++L+ GR +EE+AE +G+ +
Sbjct: 143 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQRLGREATDEELAEESGIPV 202
Query: 403 KRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
+++ +L + P SLD +G ++ P FI
Sbjct: 203 EKIGDLLDHSRDPVSLDMPVGTDEE-APLGDFI 234
>gi|342213895|ref|ZP_08706614.1| RNA polymerase sigma factor RpoD [Veillonella sp. oral taxon 780
str. F0422]
gi|341597483|gb|EGS40042.1| RNA polymerase sigma factor RpoD [Veillonella sp. oral taxon 780
str. F0422]
Length = 410
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 101/146 (69%)
Query: 278 RRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK 337
+ + G K K+I +N+RLV+SIAK Y G GM DL+QEG GL++ +KFD +KG+K
Sbjct: 166 KEVRLGSSAKQKLIDANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVDKFDYTKGYK 225
Query: 338 FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEA 397
FSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+ EE+AE
Sbjct: 226 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLLQDLGREPSPEEIAEG 285
Query: 398 TGLSMKRLHAVLLSPKAPRSLDQKIG 423
G++++R+ + + P SL+ IG
Sbjct: 286 MGITVERVREIQKISQEPVSLETPIG 311
>gi|298246437|ref|ZP_06970243.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Ktedonobacter
racemifer DSM 44963]
gi|297553918|gb|EFH87783.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Ktedonobacter
racemifer DSM 44963]
Length = 422
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 127/218 (58%), Gaps = 26/218 (11%)
Query: 207 EVDYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQW 265
E DP+R YLR LLTA+EE++L+ + + +ER +P +
Sbjct: 130 ESSLDDPVRMYLREIGRVP-LLTAHEEIRLA---------QLMERGKAERLKPAPNY--- 176
Query: 266 AAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 325
R ++ G + ++ +N+RLV+S+AK Y G GMNL DL+QEG GL+R
Sbjct: 177 ------------RYISEGEEAQKRLTEANLRLVVSVAKKYIGRGMNLLDLIQEGNIGLIR 224
Query: 326 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSEN 385
EKFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE R+ ++L +
Sbjct: 225 AVEKFDYNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINRLIRISRRLLQDL 284
Query: 386 GRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
GR P +EE+A +S +++ ++ + P SL+ IG
Sbjct: 285 GREPTSEEIAAQMEISAEKVREIIKVSQEPVSLETPIG 322
>gi|290960625|ref|YP_003491807.1| Principal sigma factor HrdA [Streptomyces scabiei 87.22]
gi|260650151|emb|CBG73267.1| Principal sigma factor HrdA [Streptomyces scabiei 87.22]
Length = 387
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 123/201 (61%), Gaps = 19/201 (9%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR---ELRRRLNY 282
LLTA EE++L+ ++ L E ER G A+G+D R +L R +
Sbjct: 103 LLTAVEEVELARRVEAGLFAE-------ERLG---------TASGLDTRLALDLDRLVVM 146
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 342
G + K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G+KFSTYA
Sbjct: 147 GRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYA 206
Query: 343 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSM 402
WWI+QA+ ++L+DQ+RTIR+P H+VE RV ++++ E G P +EVA L+
Sbjct: 207 TWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPDEVAAHLDLAP 266
Query: 403 KRLHAVLLSPKAPRSLDQKIG 423
+R+ VL + P SL +G
Sbjct: 267 ERVSEVLRLAQEPVSLHAPVG 287
>gi|123969371|ref|YP_001010229.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. AS9601]
gi|123199481|gb|ABM71122.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. AS9601]
Length = 344
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 124/202 (61%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ +E+ L +Q+ +++E + + E G P+ + +A + +++RL G
Sbjct: 49 LLSHEQEITLGRQVQEYMEVERIELEIIELTGEKPSIDELSAKLNLTTSTIKKRLRAGQR 108
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+WW
Sbjct: 109 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYAYWW 168
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q + ++++++SR IRLP H+ E ++K+ +++L E R P E+A+ L +
Sbjct: 169 IRQGITRAIAEKSRAIRLPIHITEMLNKLKKGQRELSQEMSRTPTVSELAKYVELPEDDV 228
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
++ P SL+ K+G ++
Sbjct: 229 KDLMCKAGQPVSLETKVGDGED 250
>gi|257066626|ref|YP_003152882.1| RpoD subfamily RNA polymerase sigma-70 subunit [Anaerococcus
prevotii DSM 20548]
gi|256798506|gb|ACV29161.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anaerococcus
prevotii DSM 20548]
Length = 602
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 104/152 (68%)
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
D +LRR + K K+ +N+RLV+SIAK Y G GM+ DL+QEG GL++ +K+D
Sbjct: 352 DILDLRRAVLNSKRAKKKLAETNLRLVVSIAKKYVGRGMSFLDLIQEGNMGLMKAVDKYD 411
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
++GFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+N
Sbjct: 412 YNRGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLVQDLGRDPSN 471
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
EE+AE GL ++++ + + P SL+ IG
Sbjct: 472 EEIAEQMGLEVEKVQEIRKISQEPVSLETPIG 503
>gi|383823557|ref|ZP_09978747.1| RNA polymerase sigma factor [Mycobacterium xenopi RIVM700367]
gi|383338836|gb|EID17195.1| RNA polymerase sigma factor [Mycobacterium xenopi RIVM700367]
Length = 527
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 120/202 (59%), Gaps = 17/202 (8%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY--- 282
LL A EE++L+ I+ L L +ER PT LRR + +
Sbjct: 239 LLNAEEEVELAKRIEAGLYASQLLAETAERGEKLPTA-------------LRRDMMWICR 285
Query: 283 -GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 341
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTY
Sbjct: 286 DGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTY 345
Query: 342 AHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLS 401
A WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++
Sbjct: 346 ATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDIT 405
Query: 402 MKRLHAVLLSPKAPRSLDQKIG 423
+++ + + P SLDQ IG
Sbjct: 406 PEKVLEIQQYAREPISLDQTIG 427
>gi|219847900|ref|YP_002462333.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chloroflexus
aggregans DSM 9485]
gi|219542159|gb|ACL23897.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chloroflexus
aggregans DSM 9485]
Length = 381
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/221 (38%), Positives = 126/221 (57%), Gaps = 13/221 (5%)
Query: 203 PSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTF 262
P + E+ + DP+R LLTA +E++L+ ++ + +R
Sbjct: 74 PDLGEIAFDDPVRMYLQEIGQVPLLTAEQEVELAKAME-------AGAIARQRLDRE--- 123
Query: 263 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 322
++A+A ++ EL R + G + +I +N+RLV+SIAK Y G+ + DLVQEG G
Sbjct: 124 -EYASAR--ERFELERAVQQGQDARHHLIQANLRLVVSIAKKYTSYGLTMMDLVQEGNIG 180
Query: 323 LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLY 382
L+R EKFD KG KFSTYA WWI+QA+ ++++DQSRTIRLP HM EA +VK +L
Sbjct: 181 LMRAVEKFDYKKGHKFSTYATWWIRQAITRAIADQSRTIRLPVHMGEAISQVKRTSHRLQ 240
Query: 383 SENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
R P EE+A+A G+S ++ L + P SL+ +G
Sbjct: 241 QTMQREPTPEEIADAMGISAGKVRRTLEASMHPLSLEMPVG 281
>gi|433627819|ref|YP_007261448.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140060008]
gi|432155425|emb|CCK52675.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140060008]
Length = 528
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 119/198 (60%), Gaps = 9/198 (4%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L LSER P +R++ G
Sbjct: 240 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLP---------AAQRRDMMWICRDGDR 290
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 291 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 350
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 351 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 410
Query: 406 HAVLLSPKAPRSLDQKIG 423
+ + P SLDQ IG
Sbjct: 411 LEIQQYAREPISLDQTIG 428
>gi|348027091|ref|YP_004766896.1| RNA polymerase sigma factor [Megasphaera elsdenii DSM 20460]
gi|341823145|emb|CCC74069.1| RNA polymerase sigma factor [Megasphaera elsdenii DSM 20460]
Length = 416
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 122/231 (52%), Gaps = 36/231 (15%)
Query: 201 KRPSVQEVDYS--------DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL 252
K P + VD S DP+R LL+A EE+ L+ I+
Sbjct: 115 KVPDLHNVDLSVPEGINIDDPVRMYLKEIGRVPLLSATEEITLAKAIE------------ 162
Query: 253 SERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
G +P + AG + K K+ +N+RLV+SIAK Y G GM
Sbjct: 163 ---KGNAPDATEEDIKAGT-------------IAKKKLTDANLRLVVSIAKRYVGRGMLF 206
Query: 313 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY 372
DL+QEG GL++ +KFD SKG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE
Sbjct: 207 LDLIQEGNLGLLKAVDKFDYSKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETIN 266
Query: 373 RVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
++ +QL + GR P EE+AE + ++R+ ++ + P SL+ IG
Sbjct: 267 KLIRISRQLLQDKGREPLPEEIAEKMDIPVERVREIMKIAQEPVSLETPIG 317
>gi|325849230|ref|ZP_08170681.1| RNA polymerase sigma factor RpoD [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|325480230|gb|EGC83297.1| RNA polymerase sigma factor RpoD [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 612
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 103/150 (68%), Gaps = 4/150 (2%)
Query: 278 RRLNYGIL----CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
+RLN I K K+ +N+RLV+SIAK Y G GM+ DL+QEG GL++ +K+D +
Sbjct: 364 KRLNRAIFDANRAKQKLAETNLRLVVSIAKKYVGRGMSFLDLIQEGNMGLMKAVDKYDYN 423
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
+GFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+NEE
Sbjct: 424 RGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLVQDLGRDPSNEE 483
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
+AE G+ ++++ + + P SL+ IG
Sbjct: 484 IAEQMGIEVEKVQEIRKIAQEPVSLETPIG 513
>gi|268610742|ref|ZP_06144469.1| RNA polymerase sigma factor RpoD [Ruminococcus flavefaciens FD-1]
Length = 360
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/150 (46%), Positives = 101/150 (67%), Gaps = 1/150 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +
Sbjct: 111 ELAQRMAKGDRYAKKRLSEANLRLVVSIAKKYVGRGMQFLDLIQEGNLGLIKAVEKFDYT 170
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE +VK+ QL ENG P+ EE
Sbjct: 171 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETITKVKKVSSQLLHENGHDPSPEE 230
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
+A+ + + ++ ++ + P SL+ IG
Sbjct: 231 IADKLNMPVDKVREIMRVAQDPVSLETPIG 260
>gi|453363955|dbj|GAC80270.1| RNA polymerase sigma factor SigA [Gordonia malaquae NBRC 108250]
Length = 466
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 123/203 (60%), Gaps = 19/203 (9%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 282
LL A EE++L+ I+ L E +R ++ G T AQ RR L++
Sbjct: 178 LLNAEEEVELAKRIEAGLFSTERMRRIME--SGEKLTVAQ------------RRDLSWIA 223
Query: 283 --GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 340
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFST
Sbjct: 224 RDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 283
Query: 341 YAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGL 400
YA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ +
Sbjct: 284 YATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDI 343
Query: 401 SMKRLHAVLLSPKAPRSLDQKIG 423
+ +++ + + P SLDQ IG
Sbjct: 344 TPEKVLEIQQYAREPISLDQTIG 366
>gi|409993030|ref|ZP_11276188.1| RNA polymerase sigma factor SigC [Arthrospira platensis str.
Paraca]
gi|409936091|gb|EKN77597.1| RNA polymerase sigma factor SigC [Arthrospira platensis str.
Paraca]
Length = 409
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/262 (32%), Positives = 140/262 (53%), Gaps = 47/262 (17%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGG------------ 258
+D +R RLL +EE+ + +Q ++L LR+ +E GG
Sbjct: 52 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYVQLVELRDTEAETNGGVLQTYVNLLKVR 111
Query: 259 ---------SPTFAQWAAAAGVDQRELRRRLNYGILC----------------------K 287
P+ +WAAA GV+ EL++ + G C K
Sbjct: 112 DRLCAKLSHRPSLERWAAAGGVNLAELKQIMAEGKRCWAELANLSVEELKQVQREGIQAK 171
Query: 288 DKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIK 347
D MI +N+RLV+S+AK YQ G+ L DL+QEG GL R EKFD ++G++FSTY++WWI+
Sbjct: 172 DHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTRGYRFSTYSYWWIR 231
Query: 348 QAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHA 407
Q + ++++ QSRTIRLP H+ E ++K+A++++ E R +++A ++ ++
Sbjct: 232 QGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKSRTATIDDIATELKMTPDQIRE 291
Query: 408 VLLSPKAPR--SLDQKIGINQN 427
VLL + PR SL+ K+G +++
Sbjct: 292 VLL--RVPRSVSLETKVGTDKD 311
>gi|377561650|ref|ZP_09791093.1| RNA polymerase sigma factor SigA [Gordonia otitidis NBRC 100426]
gi|377521212|dbj|GAB36258.1| RNA polymerase sigma factor SigA [Gordonia otitidis NBRC 100426]
Length = 486
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 123/203 (60%), Gaps = 19/203 (9%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 282
LL A EE++L+ I+ L E LR ++ G + AQ +R LN+
Sbjct: 198 LLNAEEEVELAKRIEAGLYATERLRRIME--SGEKLSTAQ------------KRDLNWIS 243
Query: 283 --GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 340
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFST
Sbjct: 244 RDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 303
Query: 341 YAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGL 400
YA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ +
Sbjct: 304 YATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDI 363
Query: 401 SMKRLHAVLLSPKAPRSLDQKIG 423
+ +++ + + P SLDQ IG
Sbjct: 364 TPEKVLEIQQYAREPISLDQTIG 386
>gi|374307576|ref|YP_005054007.1| RNA polymerase sigma factor RpoD [Filifactor alocis ATCC 35896]
gi|291166412|gb|EFE28458.1| RNA polymerase sigma factor RpoD [Filifactor alocis ATCC 35896]
Length = 372
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/150 (45%), Positives = 104/150 (69%), Gaps = 1/150 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL ++++ G L K K++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +
Sbjct: 123 ELAQKMDQGSELAKKKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYT 182
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL E GR P EE
Sbjct: 183 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQELGREPRPEE 242
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
+++ +S++++ + + P SL+ IG
Sbjct: 243 ISKVMDMSVEKIREIQKISQEPVSLETPIG 272
>gi|23978360|dbj|BAC21145.1| principal sigma factor [Pleurocapsa sp. PCC 7314]
Length = 203
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 95/137 (69%)
Query: 291 ITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAV 350
+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+
Sbjct: 1 VHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAI 60
Query: 351 RKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 410
++++DQSRTIRLP H+ E R+K+ K L E GR P EE+A +++++L +
Sbjct: 61 TRAIADQSRTIRLPVHLYETISRIKKTTKLLSQERGRKPTEEEIATRMEMTIEKLRFIAK 120
Query: 411 SPKAPRSLDQKIGINQN 427
S + P SL+ IG ++
Sbjct: 121 SAQLPISLETPIGKEED 137
>gi|417001145|ref|ZP_11941059.1| RNA polymerase sigma factor RpoD [Veillonella parvula
ACS-068-V-Sch12]
gi|333975628|gb|EGL76507.1| RNA polymerase sigma factor RpoD [Veillonella parvula
ACS-068-V-Sch12]
Length = 386
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 130/243 (53%), Gaps = 40/243 (16%)
Query: 181 AAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQ 240
++EK + +SV SG V+ DP+R LL+A+EE+ L+ I+
Sbjct: 85 SSEKKISIDLSVDSG------------VNIDDPVRMYLKEIGRVPLLSADEEIVLAKQIE 132
Query: 241 DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVIS 300
GS A + + + K K++ +N+RLV+S
Sbjct: 133 ----------------AGSQEDATY------------KDIQLSKKAKKKLVDANLRLVVS 164
Query: 301 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 360
IAK Y G GM DL+QEG GL++ +KFD +KG+KFSTYA WWI+QA+ ++++DQ+RT
Sbjct: 165 IAKRYVGRGMLFLDLIQEGNLGLIKAVDKFDYTKGYKFSTYATWWIRQAITRAIADQART 224
Query: 361 IRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQ 420
IR+P HMVE ++ +QL + GR P EE+AE G++++R+ + + P SL+
Sbjct: 225 IRIPVHMVETINKLIRISRQLLQDKGREPLPEEIAEGMGITVERVREIQKIAQEPVSLET 284
Query: 421 KIG 423
IG
Sbjct: 285 PIG 287
>gi|23978340|dbj|BAC21139.1| principal sigma factor [Stanieria cyanosphaera str. PCC 7437]
Length = 203
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 95/137 (69%)
Query: 291 ITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAV 350
+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+
Sbjct: 1 VQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAI 60
Query: 351 RKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 410
++++DQSRTIRLP H+ E R+K+ K L E GR P EE+A +++++L +
Sbjct: 61 TRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAK 120
Query: 411 SPKAPRSLDQKIGINQN 427
S + P SL+ IG ++
Sbjct: 121 SAQLPISLETPIGKEED 137
>gi|381162242|ref|ZP_09871472.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
azurea NA-128]
gi|379254147|gb|EHY88073.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
azurea NA-128]
Length = 514
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 121/199 (60%), Gaps = 11/199 (5%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 284
LL A EE++L+ I+ L E LR V E G Q +R+L+ + G
Sbjct: 226 LLNAEEEVELAKRIEAGLYAAERLRVVEEE---GEKLSTQM-------RRDLKWIVRDGE 275
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KGFKFSTYA W
Sbjct: 276 RAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATW 335
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ +S ++
Sbjct: 336 WIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDISPEK 395
Query: 405 LHAVLLSPKAPRSLDQKIG 423
+ + + P SLDQ IG
Sbjct: 396 VLEIQQYAREPISLDQTIG 414
>gi|318058872|ref|ZP_07977595.1| RNA polymerase principal sigma factor [Streptomyces sp. SA3_actG]
gi|333027299|ref|ZP_08455363.1| putative RNA polymerase sigma (70) factor RpoD [Streptomyces sp.
Tu6071]
gi|332747151|gb|EGJ77592.1| putative RNA polymerase sigma (70) factor RpoD [Streptomyces sp.
Tu6071]
Length = 338
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 106/164 (64%), Gaps = 3/164 (1%)
Query: 263 AQWAAAAGVDQR---ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEG 319
A+ A +D R +L R + G K ++I SN+RLV+S+AK Y G G+ + DLVQEG
Sbjct: 75 AKLAGPGPLDTRLALDLDRLVVLGRAAKRRLIESNLRLVVSVAKRYAGRGLTMLDLVQEG 134
Query: 320 CRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARK 379
GL+R EKFD ++GFKFSTYA WWI+QA+ ++L+DQ+RTIR+P H+VE RV ++
Sbjct: 135 NLGLIRAVEKFDYTRGFKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQR 194
Query: 380 QLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
L E G P++ EVA GL+ +R+ VL + P SL +G
Sbjct: 195 GLLQERGHEPSHAEVAALLGLTKERVGEVLRLAQEPVSLHTPVG 238
>gi|428204839|ref|YP_007100465.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428012958|gb|AFY91074.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 324
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 126/199 (63%), Gaps = 1/199 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG-VDQRELRRRLNYGI 284
LLT +E+ +Q + L+ +++ L+++ G P+ +WA A+G +D +L + + G
Sbjct: 27 LLTHEQEILFGKQVQRSIALQLVKDSLTKQLGREPSLDEWAKASGKLDNTQLTQAIADGE 86
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K K++ +N+RLV+SIAK Y + L DL+QEG GL RG EKFD +KG++ STYA+W
Sbjct: 87 SAKRKIVEANLRLVVSIAKKYTKRNLELLDLIQEGTIGLHRGVEKFDPTKGYRLSTYAYW 146
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+QA+ ++++ SR IRLP H+ E ++K+ ++QL R P+ E+A A L+ +
Sbjct: 147 WIRQAITRAIAQNSRNIRLPIHVTEKLNKIKKTQRQLSQHLKRTPSISELAAALELTPNQ 206
Query: 405 LHAVLLSPKAPRSLDQKIG 423
+ + L + P SL++++G
Sbjct: 207 VISYLEVARQPISLEKQVG 225
>gi|404214757|ref|YP_006668952.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Gordonia sp. KTR9]
gi|403645556|gb|AFR48796.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Gordonia sp. KTR9]
Length = 474
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 123/203 (60%), Gaps = 19/203 (9%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 282
LL A EE++L+ I+ L E LR ++ G + AQ +R LN+
Sbjct: 186 LLNAEEEVELAKRIEAGLFATERLRRIMD--AGEKLSTAQ------------KRDLNWIS 231
Query: 283 --GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 340
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFST
Sbjct: 232 RDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 291
Query: 341 YAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGL 400
YA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ +
Sbjct: 292 YATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDI 351
Query: 401 SMKRLHAVLLSPKAPRSLDQKIG 423
+ +++ + + P SLDQ IG
Sbjct: 352 TPEKVLEIQQYAREPISLDQTIG 374
>gi|343521231|ref|ZP_08758199.1| RNA polymerase sigma factor RpoD [Parvimonas sp. oral taxon 393
str. F0440]
gi|343396437|gb|EGV08974.1| RNA polymerase sigma factor RpoD [Parvimonas sp. oral taxon 393
str. F0440]
Length = 382
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 95/140 (67%)
Query: 284 ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH 343
I K K+ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +GFKFSTYA
Sbjct: 143 IEAKKKLAETNLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDFRRGFKFSTYAT 202
Query: 344 WWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMK 403
WWI+QA+ +S++DQ+RTIR+P HMVE ++ +QL E GR P NEE++E G+ +
Sbjct: 203 WWIRQAITRSIADQARTIRIPVHMVETINKLVRIERQLVQELGREPTNEEISEHMGIEVD 262
Query: 404 RLHAVLLSPKAPRSLDQKIG 423
+++ + + P SL+ IG
Sbjct: 263 KVNEIRKIAQEPVSLETPIG 282
>gi|339632715|ref|YP_004724357.1| RNA polymerase sigma factor SigA [Mycobacterium africanum GM041182]
gi|339332071|emb|CCC27777.1| RNA polymerase sigma factor SIGA (SIGMA-A) [Mycobacterium africanum
GM041182]
Length = 528
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 119/198 (60%), Gaps = 9/198 (4%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L LSER P +R++ G
Sbjct: 240 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLP---------AAQRRDMMWICRDGGR 290
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 291 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 350
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 351 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 410
Query: 406 HAVLLSPKAPRSLDQKIG 423
+ + P SLDQ IG
Sbjct: 411 LEIQQYAREPISLDQTIG 428
>gi|269798255|ref|YP_003312155.1| RpoD subfamily RNA polymerase sigma-70 subunit [Veillonella parvula
DSM 2008]
gi|282850493|ref|ZP_06259872.1| RNA polymerase sigma factor RpoD [Veillonella parvula ATCC 17745]
gi|294792116|ref|ZP_06757264.1| RNA polymerase sigma factor RpoD [Veillonella sp. 6_1_27]
gi|294793987|ref|ZP_06759124.1| RNA polymerase sigma factor RpoD [Veillonella sp. 3_1_44]
gi|269094884|gb|ACZ24875.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Veillonella
parvula DSM 2008]
gi|282579986|gb|EFB85390.1| RNA polymerase sigma factor RpoD [Veillonella parvula ATCC 17745]
gi|294455557|gb|EFG23929.1| RNA polymerase sigma factor RpoD [Veillonella sp. 3_1_44]
gi|294457346|gb|EFG25708.1| RNA polymerase sigma factor RpoD [Veillonella sp. 6_1_27]
Length = 386
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 129/243 (53%), Gaps = 40/243 (16%)
Query: 181 AAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQ 240
++EK + +SV SG V+ DP+R LL+A+EE+ L+ I+
Sbjct: 85 SSEKKISIDLSVDSG------------VNIDDPVRMYLKEIGRVPLLSADEEIVLAKQIE 132
Query: 241 DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVIS 300
AG + + + K K++ +N+RLV+S
Sbjct: 133 ----------------------------AGAQEDATYKDIQLSKKAKKKLVDANLRLVVS 164
Query: 301 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 360
IAK Y G GM DL+QEG GL++ +KFD +KG+KFSTYA WWI+QA+ ++++DQ+RT
Sbjct: 165 IAKRYVGRGMLFLDLIQEGNLGLIKAVDKFDYTKGYKFSTYATWWIRQAITRAIADQART 224
Query: 361 IRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQ 420
IR+P HMVE ++ +QL + GR P EE+AE G++++R+ + + P SL+
Sbjct: 225 IRIPVHMVETINKLIRISRQLLQDKGREPLPEEIAEGMGITVERVREIQKIAQEPVSLET 284
Query: 421 KIG 423
IG
Sbjct: 285 PIG 287
>gi|254445278|ref|ZP_05058754.1| Sigma-70 region 3 family [Verrucomicrobiae bacterium DG1235]
gi|198259586|gb|EDY83894.1| Sigma-70 region 3 family [Verrucomicrobiae bacterium DG1235]
Length = 576
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 99/149 (66%)
Query: 275 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASK 334
E+RR L K +M+ +N+RLVISIAK Y G++ DL+QEG GL++ EKF+ +
Sbjct: 305 EVRRHLKAAHKAKTEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRR 364
Query: 335 GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEV 394
G+KFSTYA WWI+QA+ +S++DQ+RTIR+P HM+E +V + +KQL E G P EEV
Sbjct: 365 GYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETLNKVMQVQKQLLQEYGHEPTPEEV 424
Query: 395 AEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
AE L ++R+ ++ + P SL +G
Sbjct: 425 AEEMALPVERVQTIMKMAQQPISLQSPVG 453
>gi|323484375|ref|ZP_08089742.1| RNA polymerase sigma factor [Clostridium symbiosum WAL-14163]
gi|323692387|ref|ZP_08106623.1| RNA polymerase sigma factor [Clostridium symbiosum WAL-14673]
gi|355627292|ref|ZP_09049193.1| RNA polymerase sigma factor rpoD [Clostridium sp. 7_3_54FAA]
gi|323402369|gb|EGA94700.1| RNA polymerase sigma factor [Clostridium symbiosum WAL-14163]
gi|323503527|gb|EGB19353.1| RNA polymerase sigma factor [Clostridium symbiosum WAL-14673]
gi|354820354|gb|EHF04771.1| RNA polymerase sigma factor rpoD [Clostridium sp. 7_3_54FAA]
Length = 372
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/138 (49%), Positives = 95/138 (68%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EK+D SKGFKFSTYA WW
Sbjct: 135 AKKRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKYDYSKGFKFSTYATWW 194
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +S++DQ+RTIR+P HMVE R+ +QL E GR P+ EEVAE + ++R+
Sbjct: 195 IRQAITRSIADQARTIRIPVHMVETINRLIRTSRQLLQELGREPHPEEVAERMDMPVERV 254
Query: 406 HAVLLSPKAPRSLDQKIG 423
++ + P SL+ IG
Sbjct: 255 REIMKISQDPVSLETPIG 272
>gi|392406805|ref|YP_006443413.1| sigma-70 family RNA polymerase sigma factor [Anaerobaculum mobile
DSM 13181]
gi|390619941|gb|AFM21088.1| RNA polymerase sigma factor, sigma-70 family [Anaerobaculum mobile
DSM 13181]
Length = 408
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 95/138 (68%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K K+I +N+RLV+SIAK Y G G++ DL+QEG GL+R EKFD KGFKFSTYA WW
Sbjct: 171 AKKKLIEANLRLVVSIAKKYIGRGLSFLDLIQEGNLGLIRAVEKFDYRKGFKFSTYATWW 230
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +QL + GR P EE+A+A GL +++
Sbjct: 231 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLVQQLGREPTTEEIAQALGLPPEKV 290
Query: 406 HAVLLSPKAPRSLDQKIG 423
+ + P SL+ IG
Sbjct: 291 EDIQRIAQEPVSLETPIG 308
>gi|373470015|ref|ZP_09561166.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
gi|371763329|gb|EHO51816.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
Length = 340
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/143 (48%), Positives = 96/143 (67%)
Query: 281 NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 340
N I + KM SN+RLV+SIAK Y G GM L DL+QEG GL+R EKFD KGFKFST
Sbjct: 147 NVRIEARKKMAESNLRLVVSIAKRYMGRGMQLLDLIQEGNLGLLRAVEKFDYQKGFKFST 206
Query: 341 YAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGL 400
YA WWI+QA+ +S++DQ+RTIR+P HMVE R+ + +++L E GR P EVA+ G+
Sbjct: 207 YATWWIRQAITRSIADQARTIRIPVHMVETINRLIKVQRKLVQELGREPKPIEVAKVMGI 266
Query: 401 SMKRLHAVLLSPKAPRSLDQKIG 423
+ ++ ++ P S++ IG
Sbjct: 267 PVAKVREIMSFALEPVSMETPIG 289
>gi|238063483|ref|ZP_04608192.1| sigma-70 region 2 domain-containing protein [Micromonospora sp.
ATCC 39149]
gi|237885294|gb|EEP74122.1| sigma-70 region 2 domain-containing protein [Micromonospora sp.
ATCC 39149]
Length = 334
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/213 (38%), Positives = 122/213 (57%), Gaps = 13/213 (6%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+D +R ++LLTA +E++L+ I+ L E A +
Sbjct: 34 TDLVRAYLNGIGRTKLLTAEQEVELAKRIEAGLFAE-------------EKLATCTPVST 80
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
V + +L + G KD ++ +N+RLV+SIAK Y G GM DL+QEG GL+R EKF
Sbjct: 81 VLRADLEIIVAEGRTAKDHLLEANLRLVVSIAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 140
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE R+ AR++L GR P
Sbjct: 141 DYTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEQVNRMVRARRELAVTLGREPT 200
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
EVA A + ++ ++ + P SLDQ +G
Sbjct: 201 VAEVARAMDVPEFQVIELISYDREPVSLDQAVG 233
>gi|23978369|dbj|BAC21149.1| principal sigma factor [Pseudanabaena sp. PCC 7403]
Length = 203
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 95/137 (69%)
Query: 291 ITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAV 350
+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+
Sbjct: 1 VQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAI 60
Query: 351 RKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 410
++++DQSRTIRLP H+ E R+K+ K L E GR P EE+A +++++L +
Sbjct: 61 TRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAK 120
Query: 411 SPKAPRSLDQKIGINQN 427
S + P SL+ IG ++
Sbjct: 121 SAQLPISLETPIGKEED 137
>gi|358463522|ref|ZP_09173562.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
gi|357070106|gb|EHI79876.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
Length = 392
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/214 (39%), Positives = 121/214 (56%), Gaps = 15/214 (7%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAA 269
SDP+R LLTA EE+ L+ I+ L E L E + A
Sbjct: 93 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIEAGLFAAEKLSEA-----------RRVTVAL 141
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
VD + R G + K K++ +N+RLV+SIAK Y G GM DL+QEG GL+R EK
Sbjct: 142 RVDLEAVERD---GNVAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEK 198
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
FD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P
Sbjct: 199 FDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREP 258
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
EE+ + L+ ++ + + P SL+ IG
Sbjct: 259 TPEEIGKEMDLTPDKVREIQKVSQEPVSLETPIG 292
>gi|326384438|ref|ZP_08206118.1| RNA polymerase sigma factor [Gordonia neofelifaecis NRRL B-59395]
gi|326196783|gb|EGD53977.1| RNA polymerase sigma factor [Gordonia neofelifaecis NRRL B-59395]
Length = 466
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 81/203 (39%), Positives = 123/203 (60%), Gaps = 19/203 (9%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 282
LL A EE++L+ I+ L E LR V+ G + AQ RR L++
Sbjct: 178 LLNAEEEVELAKRIEAGLFATERLRRVME--SGEKLSVAQ------------RRDLSWIS 223
Query: 283 --GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 340
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFST
Sbjct: 224 RDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 283
Query: 341 YAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGL 400
YA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ +
Sbjct: 284 YATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDI 343
Query: 401 SMKRLHAVLLSPKAPRSLDQKIG 423
+ +++ + + P SLDQ IG
Sbjct: 344 TPEKVLEIQQYAREPISLDQTIG 366
>gi|296139587|ref|YP_003646830.1| RpoD subfamily RNA polymerase sigma-70 subunit [Tsukamurella
paurometabola DSM 20162]
gi|296027721|gb|ADG78491.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Tsukamurella
paurometabola DSM 20162]
Length = 483
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 121/202 (59%), Gaps = 17/202 (8%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY--- 282
LL A EE++L+ I+ L E + ER G P +RR +N+
Sbjct: 195 LLNAEEEVELAKRIEAGLFAEQMINRWVER-GEKPAIG------------IRRDMNWIAR 241
Query: 283 -GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 341
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTY
Sbjct: 242 DGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTY 301
Query: 342 AHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLS 401
A WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++
Sbjct: 302 ATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDIT 361
Query: 402 MKRLHAVLLSPKAPRSLDQKIG 423
+++ + + P SLDQ IG
Sbjct: 362 PEKVLEIQQYAREPISLDQTIG 383
>gi|160947542|ref|ZP_02094709.1| hypothetical protein PEPMIC_01477 [Parvimonas micra ATCC 33270]
gi|158446676|gb|EDP23671.1| RNA polymerase sigma factor RpoD [Parvimonas micra ATCC 33270]
Length = 382
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 95/140 (67%)
Query: 284 ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH 343
I K K+ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +GFKFSTYA
Sbjct: 143 IEAKKKLAETNLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDFRRGFKFSTYAT 202
Query: 344 WWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMK 403
WWI+QA+ +S++DQ+RTIR+P HMVE ++ +QL E GR P NEE++E G+ +
Sbjct: 203 WWIRQAITRSIADQARTIRIPVHMVETINKLVRIERQLVQELGREPTNEEISEHMGIEVD 262
Query: 404 RLHAVLLSPKAPRSLDQKIG 423
+++ + + P SL+ IG
Sbjct: 263 KVNEIRKIAQEPVSLETPIG 282
>gi|218295160|ref|ZP_03495996.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermus aquaticus
Y51MC23]
gi|218244363|gb|EED10888.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermus aquaticus
Y51MC23]
Length = 439
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/252 (36%), Positives = 138/252 (54%), Gaps = 32/252 (12%)
Query: 208 VDYSDPLRYLRATTSSSRLLTANEEMQLS----AGIQDLLKL--------EGLREVLSER 255
V SDP+R LLT EE+ L+ G++ + KL E +REV+ +
Sbjct: 91 VSTSDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAK 150
Query: 256 CGGS------PTFAQWAAAAGVDQ---------RELRRRLNY---GILCKDKMITSNIRL 297
G+ P + V++ +EL+R L+ G + +I +N+RL
Sbjct: 151 ILGTARIQKIPGLKEKLDPKTVEEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRL 210
Query: 298 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 357
V+SIAK Y G G++ DL+QEG +GL+R EKF+ + FKFSTYA WWI+QA+ ++++DQ
Sbjct: 211 VVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFSTYATWWIRQAINRAIADQ 270
Query: 358 SRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEAT--GLSMKRLHAVLLSPKAP 415
+RTIR+P HMVE ++ +QL E GR P+ EE+AEA G KR+ L + P
Sbjct: 271 ARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEP 330
Query: 416 RSLDQKIGINQN 427
SL+ IG ++
Sbjct: 331 VSLETPIGDEKD 342
>gi|126697159|ref|YP_001092045.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9301]
gi|126544202|gb|ABO18444.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9301]
Length = 344
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 123/202 (60%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ +E+ L +Q+ +++E +SE G P+ + + + +++RL G
Sbjct: 49 LLSHEQEITLGRQVQEYMQVERAELEISELTGDKPSIDELSTKLNLSTSVIKKRLRAGQR 108
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+WW
Sbjct: 109 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYAYWW 168
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q + ++++++SR IRLP H+ E ++K+ +++L E R P E+A+ L +
Sbjct: 169 IRQGITRAIAEKSRAIRLPIHITEMLNKLKKGQRELSQEMSRTPTVSELAKYVELPEDDV 228
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
++ P SL+ K+G ++
Sbjct: 229 KDLMCKAGQPVSLETKVGDGED 250
>gi|256545301|ref|ZP_05472665.1| RNA polymerase sigma factor RpoD [Anaerococcus vaginalis ATCC
51170]
gi|256398982|gb|EEU12595.1| RNA polymerase sigma factor RpoD [Anaerococcus vaginalis ATCC
51170]
Length = 614
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 103/150 (68%), Gaps = 4/150 (2%)
Query: 278 RRLNYGIL----CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
+RLN I K K+ +N+RLV+SIAK Y G GM+ DL+QEG GL++ +K+D +
Sbjct: 366 KRLNRAIFDANRAKQKLAETNLRLVVSIAKKYVGRGMSFLDLIQEGNMGLMKAVDKYDYN 425
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
+GFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+NEE
Sbjct: 426 RGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLVQDLGRDPSNEE 485
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
+AE G+ ++++ + + P SL+ IG
Sbjct: 486 IAEQMGIEVEKVQEIRKIAQEPVSLETPIG 515
>gi|352095714|ref|ZP_08956728.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351678856|gb|EHA62001.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 355
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 109/168 (64%), Gaps = 4/168 (2%)
Query: 262 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCR 321
+ WA D R+L+RRL G +D+MI +N+RLV+++AK YQ GM L DLVQEG
Sbjct: 91 YQTWADLITSDSRDLQRRLREGRKARDRMIQANLRLVVAVAKKYQHRGMELLDLVQEGTL 150
Query: 322 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL 381
GL R EKFD+++GF+FSTY++WWI+Q + ++++ QSRTIRLP H+ E R+K ++++
Sbjct: 151 GLERAVEKFDSTRGFRFSTYSYWWIRQGITRAIATQSRTIRLPVHITEKLNRIKRVQQEI 210
Query: 382 YSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR--SLDQKIGINQN 427
S GR + ++A +S + L + PR SL+ K+G +Q+
Sbjct: 211 ASTEGRTASVTDLARELSVSEDTVRQTL--ARVPRSVSLETKVGRDQD 256
>gi|404420807|ref|ZP_11002540.1| RNA polymerase sigma factor SigB [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
gi|403659675|gb|EJZ14305.1| RNA polymerase sigma factor SigB [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
Length = 319
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 109/163 (66%), Gaps = 1/163 (0%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 69 KRDLATVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 128
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++++ GR +E
Sbjct: 129 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDE 188
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
E+AE +G+ +++++ +L + P SLD +G ++ P FI
Sbjct: 189 ELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEE-APLGDFI 230
>gi|317122932|ref|YP_004102935.1| RNA polymerase sigma-70 subunit RpoD [Thermaerobacter marianensis
DSM 12885]
gi|315592912|gb|ADU52208.1| RNA polymerase, sigma 70 subunit, RpoD [Thermaerobacter marianensis
DSM 12885]
Length = 433
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/150 (47%), Positives = 102/150 (68%), Gaps = 1/150 (0%)
Query: 275 ELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G K K+I +N+RLV+SIAK Y G GM DL+QEG GL++ AEKFD
Sbjct: 184 ELAKRIEQGDEEAKRKLIQANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAAEKFDYR 243
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL E GR P EE
Sbjct: 244 KGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLVQELGREPTPEE 303
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
+A+ G+ +++ ++ + P SL+ IG
Sbjct: 304 IAKEMGIEPEKVREIMKIAQEPVSLETPIG 333
>gi|54025745|ref|YP_119987.1| RNA polymerase sigma factor SigB [Nocardia farcinica IFM 10152]
gi|54017253|dbj|BAD58623.1| putative principal sigma factor [Nocardia farcinica IFM 10152]
Length = 322
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 137/240 (57%), Gaps = 18/240 (7%)
Query: 200 RKRPSVQEVDYSDP----LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 255
R R S ++D P +R + LLTA +E++L+ I+ L + L E S+R
Sbjct: 8 RVRASDSDLDAQSPAADLVRVYLNGIGRTALLTAADEVELAKRIEAGLYAQHLLET-SKR 66
Query: 256 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 315
+ +++L + G + ++ +N+RLV+S+AK Y G GM L DL
Sbjct: 67 LSAAK------------KKDLAMIVRDGQAARSHLLEANLRLVVSLAKRYTGRGMPLLDL 114
Query: 316 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVK 375
+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++
Sbjct: 115 IQEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLA 174
Query: 376 EARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
+++L+ + GR +EE+A +G+ ++++ +L + P SLD +G N P FI
Sbjct: 175 RIKRELHQQLGREATDEELAAESGIPVEKIADLLDHSRDPVSLDMPVG-NDEEAPLGDFI 233
>gi|441521299|ref|ZP_21002960.1| putative RNA polymerase sigma factor [Gordonia sihwensis NBRC
108236]
gi|441459131|dbj|GAC60921.1| putative RNA polymerase sigma factor [Gordonia sihwensis NBRC
108236]
Length = 465
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 81/203 (39%), Positives = 123/203 (60%), Gaps = 19/203 (9%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 282
LL A EE++L+ I+ L E LR V+ G + AQ RR L++
Sbjct: 177 LLNAEEEVELAKRIEAGLFATERLRRVME--SGEKLSVAQ------------RRDLSWIS 222
Query: 283 --GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 340
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFST
Sbjct: 223 RDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 282
Query: 341 YAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGL 400
YA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ +
Sbjct: 283 YATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDI 342
Query: 401 SMKRLHAVLLSPKAPRSLDQKIG 423
+ +++ + + P SLDQ IG
Sbjct: 343 TPEKVLEIQQYAREPISLDQTIG 365
>gi|365839537|ref|ZP_09380773.1| RNA polymerase sigma factor RpoD, partial [Anaeroglobus geminatus
F0357]
gi|364564505|gb|EHM42269.1| RNA polymerase sigma factor RpoD, partial [Anaeroglobus geminatus
F0357]
Length = 398
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 121/216 (56%), Gaps = 28/216 (12%)
Query: 208 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
V+ DP+R LL+A EE+ L+ I+ GG A+ A
Sbjct: 112 VNIDDPVRMYLKEIGRVPLLSAEEEITLAKRIE---------------AGG----AEGAT 152
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
A ++ G + K K+ +N+RLV+SIAK Y G GM DL+QEG GL++
Sbjct: 153 A---------EEISTGNIAKKKLTDANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAV 203
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
EKFD SKG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR
Sbjct: 204 EKFDYSKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRISRQLLQEKGR 263
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
P EE+A G+ ++R+ ++ + P SL+ IG
Sbjct: 264 EPLPEEIAGKMGVPVERVREIMKIAQEPVSLETPIG 299
>gi|383819225|ref|ZP_09974501.1| RNA polymerase sigma factor SigB [Mycobacterium phlei RIVM601174]
gi|383337196|gb|EID15577.1| RNA polymerase sigma factor SigB [Mycobacterium phlei RIVM601174]
Length = 319
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 108/163 (66%), Gaps = 1/163 (0%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+REL + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 69 KRELAEVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 128
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++++ + GR +E
Sbjct: 129 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQQLGREATDE 188
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
E+A +G+ +++++ +L + P SLD +G N P FI
Sbjct: 189 ELAAESGIPVEKINDLLEHSRDPVSLDMPVG-NDEEAPLGDFI 230
>gi|302670285|ref|YP_003830245.1| RNA polymerase sigma factor RpoD [Butyrivibrio proteoclasticus
B316]
gi|302394758|gb|ADL33663.1| RNA polymerase sigma factor RpoD [Butyrivibrio proteoclasticus
B316]
Length = 521
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 81/222 (36%), Positives = 122/222 (54%), Gaps = 22/222 (9%)
Query: 208 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
+ DP+R LLTA++E+ L+ ++ G+ + A
Sbjct: 216 ISIEDPVRMYLKEIGKVPLLTADQEIDLAQAME----------------AGADAEKELAD 259
Query: 268 AAGVDQ------RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCR 321
V++ +EL + G K ++ +N+RLV+SIAK Y G GM DL+QEG
Sbjct: 260 DKDVNKLSDARKKELNAIIYEGEEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNL 319
Query: 322 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL 381
GL++ EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL
Sbjct: 320 GLIKAVEKFDFRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQL 379
Query: 382 YSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
E GR P EEVA+ + ++R+ +L + P SL+ IG
Sbjct: 380 LQELGREPLPEEVAKEMNMPVERVREILKISQEPVSLETPIG 421
>gi|23978365|dbj|BAC21147.1| principal sigma factor [Leptolyngbya sp. PCC 7375]
Length = 203
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 95/137 (69%)
Query: 291 ITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAV 350
+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+
Sbjct: 1 VQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAI 60
Query: 351 RKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 410
++++DQSRTIRLP H+ E R+K+ K L E GR P EE+A +++++L +
Sbjct: 61 TRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIATRMEMTIEKLRFIAK 120
Query: 411 SPKAPRSLDQKIGINQN 427
S + P SL+ IG ++
Sbjct: 121 SAQLPISLETPIGKEED 137
>gi|257056437|ref|YP_003134269.1| RNA polymerase sigma factor SigB [Saccharomonospora viridis DSM
43017]
gi|256586309|gb|ACU97442.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
viridis DSM 43017]
Length = 342
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 127/230 (55%), Gaps = 24/230 (10%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+D +R + LLTA EE+ L+ I+ + FAQ
Sbjct: 43 ADLVRVYLNGIGKTALLTAEEEVDLAKRIE------------------AGVFAQHVLDTS 84
Query: 271 VD-----QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 325
D + EL + G K+ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R
Sbjct: 85 DDLSEERKAELSEVVRDGEEAKNHLLQANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIR 144
Query: 326 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSEN 385
EKFD +KGFKFSTYA WWI+QA+ + ++DQ RTIRLP H+VE ++ ++ L+
Sbjct: 145 AVEKFDYTKGFKFSTYATWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQRL 204
Query: 386 GRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
GR +EE+A +G++ K++ +L + P SLD +G +++ P FI
Sbjct: 205 GREATHEELAAESGIAEKKVADLLDHARDPVSLDMPVGADED-APLGDFI 253
>gi|254416308|ref|ZP_05030062.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196176990|gb|EDX72000.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 416
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 131/234 (55%), Gaps = 29/234 (12%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-- 272
RY+R ++ T E + I+ + L + L+ + G P+ +WA AGVD
Sbjct: 89 RYMRLLDLRAKFATPEEPV-----IEHFVHLIETHDRLASQLGHRPSLERWATTAGVDVA 143
Query: 273 ----------QR----------ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
QR EL + G+ K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 144 TLKPSLVKGKQRWAELAELTVKELEQVQAEGLQAKEHMIKANLRLVVSVAKKYQNRGLEL 203
Query: 313 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY 372
DL+QEG GL R EKFD +KG++FSTYA+WWI+Q + ++++ QSRTIRLP H+ E
Sbjct: 204 LDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLN 263
Query: 373 RVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQ 426
++K+A++++ E GR E++A+ + ++ VL+ + PRS+ +I + +
Sbjct: 264 KIKKAQRKISQEQGRTATIEDIAKELEMDAPQVREVLM--RVPRSVSLEIKVGK 315
>gi|417003308|ref|ZP_11942379.1| RNA polymerase sigma factor RpoD [Anaerococcus prevotii
ACS-065-V-Col13]
gi|325478784|gb|EGC81895.1| RNA polymerase sigma factor RpoD [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 604
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 104/152 (68%)
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
D EL++ + K K+ +N+RLV+SIAK Y G GM+ DL+QEG GL++ +K+D
Sbjct: 354 DYYELKKAVFISKAAKQKLAETNLRLVVSIAKKYVGRGMSFLDLIQEGNMGLMKAVDKYD 413
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
++GFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+N
Sbjct: 414 YNRGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLVQDLGRDPSN 473
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
EE+AE G+ ++++ + + P SL+ IG
Sbjct: 474 EEIAEQMGIEVEKVQEIRKISQEPVSLETPIG 505
>gi|113953359|ref|YP_732042.1| RNA polymerase sigma-70 factor family protein [Synechococcus sp.
CC9311]
gi|113880710|gb|ABI45668.1| RNA polymerase sigma-70 factor family protein [Synechococcus sp.
CC9311]
Length = 376
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 110/173 (63%), Gaps = 4/173 (2%)
Query: 257 GGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLV 316
G + + WA D REL+ RL G +D+MI +N+RLV+++AK YQ GM L DLV
Sbjct: 107 GLTQGYETWANLISTDSRELQLRLRRGRKARDRMIQANLRLVVAVAKKYQHRGMELLDLV 166
Query: 317 QEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKE 376
QEG GL R EKFD+++GF+FSTY++WWI+Q + ++++ QSRTIRLP H+ E R+K
Sbjct: 167 QEGTLGLERAVEKFDSTRGFRFSTYSYWWIRQGITRAIATQSRTIRLPVHITEKLNRIKR 226
Query: 377 ARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR--SLDQKIGINQN 427
++++ S GR + ++A +S + L + PR SL+ K+G +Q+
Sbjct: 227 VQQEIASNEGRTASMTDLARELSVSEDTVRQTL--ARVPRSVSLETKVGRDQD 277
>gi|402309575|ref|ZP_10828567.1| RNA polymerase sigma factor RpoD [Eubacterium sp. AS15]
gi|400372231|gb|EJP25179.1| RNA polymerase sigma factor RpoD [Eubacterium sp. AS15]
Length = 538
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 95/138 (68%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K K++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +KGFKFSTYA WW
Sbjct: 301 AKMKIVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYTKGFKFSTYATWW 360
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE+AE G+S ++
Sbjct: 361 IRQAITRAIADQARTIRIPVHMVETINKLIRINRQLVQELGRDPRPEEIAEQMGMSQDKI 420
Query: 406 HAVLLSPKAPRSLDQKIG 423
++ + P SL+ IG
Sbjct: 421 REIMKIAQEPVSLETPIG 438
>gi|213964575|ref|ZP_03392775.1| RNA polymerase sigma factor A [Corynebacterium amycolatum SK46]
gi|213952768|gb|EEB64150.1| RNA polymerase sigma factor A [Corynebacterium amycolatum SK46]
Length = 520
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 124/202 (61%), Gaps = 17/202 (8%)
Query: 226 LLTANEEMQLS----AGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLN 281
LLTA EE+ L+ AG+ K++ +++ G +AQ +R+LR
Sbjct: 232 LLTAEEEVSLAKRIEAGLYAQYKIDE-----AKQAGERIAYAQ--------KRDLREISR 278
Query: 282 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 341
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTY
Sbjct: 279 DGQRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTY 338
Query: 342 AHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLS 401
A WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++
Sbjct: 339 ATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDIT 398
Query: 402 MKRLHAVLLSPKAPRSLDQKIG 423
+++ + + P SLDQ IG
Sbjct: 399 EEKVLEIQQYAREPISLDQTIG 420
>gi|306820486|ref|ZP_07454120.1| DNA-directed RNA polymerase sigma subunit RpoD [Eubacterium yurii
subsp. margaretiae ATCC 43715]
gi|304551472|gb|EFM39429.1| DNA-directed RNA polymerase sigma subunit RpoD [Eubacterium yurii
subsp. margaretiae ATCC 43715]
Length = 538
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 95/138 (68%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K K++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +KGFKFSTYA WW
Sbjct: 301 AKMKIVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYTKGFKFSTYATWW 360
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE+AE G+S ++
Sbjct: 361 IRQAITRAIADQARTIRIPVHMVETINKLIRINRQLVQELGRDPRPEEIAEQMGMSQDKI 420
Query: 406 HAVLLSPKAPRSLDQKIG 423
++ + P SL+ IG
Sbjct: 421 REIMKIAQEPVSLETPIG 438
>gi|225377779|ref|ZP_03755000.1| hypothetical protein ROSEINA2194_03430 [Roseburia inulinivorans DSM
16841]
gi|225210363|gb|EEG92717.1| hypothetical protein ROSEINA2194_03430 [Roseburia inulinivorans DSM
16841]
Length = 426
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 123/216 (56%), Gaps = 2/216 (0%)
Query: 208 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
V DP+R LL+A EE++L+ ++ + +L R +
Sbjct: 113 VSIEDPVRMYLKEIGKVPLLSAEEEIELAKNMEAGAVAKEKIAILKSREEKATEEELAEI 172
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
+ + L++ L+ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++
Sbjct: 173 KEEI--KNLQKDLDAGDEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAV 230
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
EKFD KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR
Sbjct: 231 EKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGR 290
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
P+ EE+A + ++R+ +L + P SL+ IG
Sbjct: 291 EPSPEEIAAEMNMPVERVREILKISQEPVSLETPIG 326
>gi|270283843|ref|ZP_05965086.2| RNA polymerase principal sigma factor; sigma 70 [Bifidobacterium
gallicum DSM 20093]
gi|270277549|gb|EFA23403.1| RNA polymerase principal sigma factor; sigma 70 [Bifidobacterium
gallicum DSM 20093]
Length = 485
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/214 (39%), Positives = 128/214 (59%), Gaps = 14/214 (6%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP++ YL+ S LL A +E+ LS I+ L + L + SE +FA+
Sbjct: 184 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESEGM----SFAR----- 233
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 329
+REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EK
Sbjct: 234 ---KRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEK 290
Query: 330 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHP 389
FD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++Q+ + GR P
Sbjct: 291 FDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPVHMVEVINKLSRVQRQMLQDLGREP 350
Query: 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
+E+A + ++++ V + P SL +G
Sbjct: 351 TPDELARELDMPVEKVQEVQKYGREPISLHTPLG 384
>gi|377562738|ref|ZP_09792106.1| RNA polymerase sigma factor SigB [Gordonia sputi NBRC 100414]
gi|377530035|dbj|GAB37271.1| RNA polymerase sigma factor SigB [Gordonia sputi NBRC 100414]
Length = 336
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 91/253 (35%), Positives = 147/253 (58%), Gaps = 25/253 (9%)
Query: 191 SVKSGSTSRRKRPSVQEVDY------SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLK 244
+V SG T+ RP++ E D +D +R + LL A +E++L+ I+
Sbjct: 12 TVASGDTTP-SRPAMTEQDLDAQSPAADLVRVYLNGIGRTALLNAEQEVELAKQIE---- 66
Query: 245 LEGL--REVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIA 302
GL + VL+ R + +AA +R+L + G + + ++ +N+RLV+S+A
Sbjct: 67 -AGLYAKHVLATR-------KRLSAAK---KRDLTIVVREGEVARAHLLEANLRLVVSLA 115
Query: 303 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 362
K Y G GM L DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIR
Sbjct: 116 KRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIR 175
Query: 363 LPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKI 422
LP H+VE ++ +++L+ + GR ++E+A +G+ +++ +L + P SLD +
Sbjct: 176 LPVHLVEQVNKLARIKRELHQQLGREATDDELANESGIPAEKIADLLDHSRDPVSLDMPV 235
Query: 423 GINQNLKPSVCFI 435
G ++ P FI
Sbjct: 236 GSDEE-APLGDFI 247
>gi|441518658|ref|ZP_21000373.1| RNA polymerase sigma factor SigB [Gordonia hirsuta DSM 44140 = NBRC
16056]
gi|441454472|dbj|GAC58334.1| RNA polymerase sigma factor SigB [Gordonia hirsuta DSM 44140 = NBRC
16056]
Length = 322
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/246 (35%), Positives = 136/246 (55%), Gaps = 18/246 (7%)
Query: 194 SGSTSRRKRPSVQEVDYSDP----LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR 249
S +T R P+ Q++D P +R + LL A +E+ L+ I+ L L
Sbjct: 2 STATRTRPAPTAQDLDAQSPSADLVRVYLNGIGRTALLNAEQEVDLAKAIEVGLYARHLL 61
Query: 250 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 309
+ ++R G + +R+L + G + ++ +N+RLV+S+AK Y G G
Sbjct: 62 DT-TKRMGPAR------------KRDLNILVREGEQARAHLLEANLRLVVSLAKRYTGRG 108
Query: 310 MNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVE 369
M L DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE
Sbjct: 109 MPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAISRGMADQSRTIRLPVHLVE 168
Query: 370 ATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLK 429
++ R++L+ + GR +EE+A TG+ ++ ++ + SLD +G N
Sbjct: 169 QVNKISRIRRELHQQLGREATDEELASETGIPAAKIADLMDHSRDTVSLDMPVG-NDEEA 227
Query: 430 PSVCFI 435
P FI
Sbjct: 228 PLGDFI 233
>gi|377562745|ref|ZP_09792113.1| RNA polymerase sigma factor SigA [Gordonia sputi NBRC 100414]
gi|377530042|dbj|GAB37278.1| RNA polymerase sigma factor SigA [Gordonia sputi NBRC 100414]
Length = 483
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 89/254 (35%), Positives = 138/254 (54%), Gaps = 19/254 (7%)
Query: 175 KARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQ 234
KA + A+ A V + R+ R + +D +R LL A EE++
Sbjct: 144 KASKDADAKTAGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVE 203
Query: 235 LSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKDK 289
L+ I+ L E LR ++ G + AQ +R LN+ G K+
Sbjct: 204 LAKRIEAGLYATERLRRIME--SGEKISTAQ------------KRDLNWISRDGNRAKNH 249
Query: 290 MITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQA 349
++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA
Sbjct: 250 LLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQA 309
Query: 350 VRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVL 409
+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ ++ +
Sbjct: 310 ITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPDKVLEIQ 369
Query: 410 LSPKAPRSLDQKIG 423
+ P SLDQ IG
Sbjct: 370 QYAREPISLDQTIG 383
>gi|291301996|ref|YP_003513274.1| RpoD subfamily RNA polymerase sigma-70 subunit [Stackebrandtia
nassauensis DSM 44728]
gi|290571216|gb|ADD44181.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stackebrandtia
nassauensis DSM 44728]
Length = 559
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 82/203 (40%), Positives = 124/203 (61%), Gaps = 19/203 (9%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 282
LL A +E++L+ I+ L +E LR+ L E PT ++RR L +
Sbjct: 271 LLNAAQEVELAKRIEAGLYAVERLRQ-LKEAGEEIPT-------------QVRRDLEWVT 316
Query: 283 --GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 340
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KGFKFST
Sbjct: 317 RDGDRAKNHLLAANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGFKFST 376
Query: 341 YAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGL 400
YA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ +
Sbjct: 377 YATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPAPEELAKEMDI 436
Query: 401 SMKRLHAVLLSPKAPRSLDQKIG 423
S +++ + + P SLDQ IG
Sbjct: 437 SPEKVLEIQQYAREPISLDQTIG 459
>gi|254388870|ref|ZP_05004102.1| RNA polymerase principal sigma factor hrdD [Streptomyces
clavuligerus ATCC 27064]
gi|294813166|ref|ZP_06771809.1| RNA polymerase principal sigma factor hrdD [Streptomyces
clavuligerus ATCC 27064]
gi|326441537|ref|ZP_08216271.1| RNA polymerase principal sigma factor hrdD [Streptomyces
clavuligerus ATCC 27064]
gi|197702589|gb|EDY48401.1| RNA polymerase principal sigma factor hrdD [Streptomyces
clavuligerus ATCC 27064]
gi|294325765|gb|EFG07408.1| RNA polymerase principal sigma factor hrdD [Streptomyces
clavuligerus ATCC 27064]
Length = 333
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 101/155 (65%)
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
A G +EL + G KD I SN+RLV+++A+ Y +G+ L DLVQEG GLVR
Sbjct: 79 AGGATHKELEALVAEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLVQEGNAGLVRAV 138
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
EKFD SKGFKFSTYA WWI+QA+ +S++DQSRTIRLP H+VE R++ +++ E GR
Sbjct: 139 EKFDYSKGFKFSTYATWWIRQAITRSIADQSRTIRLPVHLVEELGRIRRVQREFNREKGR 198
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKI 422
P E+A+ G + +R+ VL + P SL+ +
Sbjct: 199 EPEAAEIAQELGSTPERVTDVLDWARDPVSLNMAV 233
>gi|307150096|ref|YP_003885480.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306980324|gb|ADN12205.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 298
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 119/197 (60%), Gaps = 19/197 (9%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
DP+R LL + EE+QL+ +Q +L L L++ AAA
Sbjct: 7 DPVRSYLQEIGRIPLLNSEEEIQLATKVQKMLSLLELKK------------DNLAAAE-- 52
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
++ + G K +MI +N+RLV+SIAK YQ G++L DL+QEG GL+R EKFD
Sbjct: 53 -----QKIIEQGQRAKQQMIQANLRLVVSIAKRYQRRGLSLLDLIQEGSLGLIRAVEKFD 107
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
SKG+KFSTYA+WW++QA+ ++L+++SRTIRLP HM E +K++ ++L E GR P
Sbjct: 108 PSKGYKFSTYAYWWVRQAITRALAEKSRTIRLPIHMTENLNHLKKSVRELTGELGRKPTE 167
Query: 392 EEVAEATGLSMKRLHAV 408
+EVA+ + +++L +
Sbjct: 168 QEVAQRMEIPLEKLQEI 184
>gi|23978337|dbj|BAC21138.1| principal sigma factor [Pseudanabaena sp. PCC 7367]
Length = 203
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/133 (50%), Positives = 93/133 (69%)
Query: 291 ITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAV 350
+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+
Sbjct: 1 VQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAI 60
Query: 351 RKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 410
++++DQSRTIRLP H+ E R+K+ K L E GR P EE+A +++++L +
Sbjct: 61 TRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAK 120
Query: 411 SPKAPRSLDQKIG 423
S + P SL+ IG
Sbjct: 121 SAQLPISLETPIG 133
>gi|374814976|ref|ZP_09718713.1| RNA polymerase sigma factor RpoD [Treponema primitia ZAS-1]
Length = 603
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 69/138 (50%), Positives = 94/138 (68%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
KD++ T+N+RLV+SIAK Y G++ DL+QEG GL++ EKFD KGFKFSTYA WW
Sbjct: 365 AKDRLTTANLRLVVSIAKRYNNRGLHFFDLIQEGNIGLIKAVEKFDYHKGFKFSTYATWW 424
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +SLSDQ+RTIR+P HM+E +V K L E GR P +EE+AE G + ++
Sbjct: 425 IRQAITRSLSDQARTIRVPVHMIEQINKVSRESKSLLQELGREPTDEEIAERLGWNALKV 484
Query: 406 HAVLLSPKAPRSLDQKIG 423
+V + P SL+ IG
Sbjct: 485 KSVKNVSREPISLETPIG 502
>gi|385678070|ref|ZP_10051998.1| RNA polymerase sigma factor SigB [Amycolatopsis sp. ATCC 39116]
Length = 306
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 129/219 (58%), Gaps = 21/219 (9%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGL----REVLSERCGGSPTFAQWA 266
+DP+R S + LLT EE+ L+ I+ L + L R + +R T A+
Sbjct: 9 ADPVRAYLTGISRAGLLTIEEEVTLAKRIEAGLYAQHLLATTRVLDPQRRADLLTIAE-- 66
Query: 267 AAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 326
+ RE K++++ +N+RLV+SIAK Y G GM+L DL+QEG GL+R
Sbjct: 67 -----EGRE----------AKNRLLEANLRLVVSIAKRYTGRGMSLLDLIQEGNLGLIRA 111
Query: 327 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG 386
EK+D + GFKFSTYA WWI+QA+ ++L+DQSRTIR+P H+ E RV AR++L + G
Sbjct: 112 VEKYDYTPGFKFSTYATWWIRQAISRALADQSRTIRIPVHLAEQVNRVLAARRELAARLG 171
Query: 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGIN 425
R P +E++A L+ ++ +L + P SLDQ +G +
Sbjct: 172 REPGHEDIAAELSLTPFQVIELLSYNEEPISLDQTVGTD 210
>gi|22298042|ref|NP_681289.1| group 2 RNA polymerase sigma factor [Thermosynechococcus elongatus
BP-1]
gi|22294220|dbj|BAC08051.1| group 2 RNA polymerase sigma factor [Thermosynechococcus elongatus
BP-1]
Length = 375
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 110/163 (67%)
Query: 265 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV 324
WA AA + EL+ G K++++ +N+RLV++IAK YQ G+ DL+QEG GL
Sbjct: 115 WAKAANITLSELQHIERQGQRAKNQLLQANLRLVVNIAKKYQHHGVEFLDLIQEGSLGLE 174
Query: 325 RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSE 384
R EKFD +KGF+FSTYA+WWI+Q++ ++++ QSRTIRLP HMVE ++K A+++L ++
Sbjct: 175 RAVEKFDPTKGFRFSTYAYWWIRQSITRAVASQSRTIRLPIHMVEKLNKIKRAQRRLAAQ 234
Query: 385 NGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
G P+ ++A+ L + ++ VL++ +L+Q++G +Q
Sbjct: 235 RGAMPSLADIAQELNLEVSQVRQVLMAVPKSVALEQRVGSDQE 277
>gi|375101508|ref|ZP_09747771.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
cyanea NA-134]
gi|374662240|gb|EHR62118.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
cyanea NA-134]
Length = 343
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/231 (37%), Positives = 131/231 (56%), Gaps = 26/231 (11%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLS----AGI--QDLLKLEGLREVLSERCGGSPTFAQ 264
+D +R + LLTA EE+ L+ AG+ Q +L G ++ +ER G
Sbjct: 44 ADLVRVYLNGIGKTALLTAEEEVDLAKRIEAGVFAQHVLDTSG--DLSAERRG------- 94
Query: 265 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV 324
EL + G K+ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+
Sbjct: 95 ----------ELAAIVRDGERAKNHLLQANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 144
Query: 325 RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSE 384
R EKFD +KGFKFSTYA WWI+QA+ + ++DQ RTIRLP H+VE ++ ++ L+
Sbjct: 145 RAVEKFDYAKGFKFSTYATWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQR 204
Query: 385 NGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
GR NEE+A +G++ ++ ++L + P SLD +G ++ P FI
Sbjct: 205 LGREATNEELAAESGIAETKVASLLDHARDPVSLDMPVGTEED-APLGDFI 254
>gi|225851205|ref|YP_002731439.1| RNA polymerase sigma factor RpoD (Sigma-70) [Persephonella marina
EX-H1]
gi|225645895|gb|ACO04081.1| RNA polymerase sigma factor RpoD (Sigma-70) [Persephonella marina
EX-H1]
Length = 577
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 139/250 (55%), Gaps = 13/250 (5%)
Query: 180 RAAEKAAANVMSVKSGSTSRRKR-PSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAG 238
+ A++ M +K KR +Q++D D + L+ +L EE S G
Sbjct: 234 KIADELKELYMKLKRKEKDLNKRIKRLQKID-PDVEKLLKGDYDDPEILKKIEENGFSFG 292
Query: 239 IQDLLKLEGLR-----EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITS 293
++L+ E L+ E L E G PT ++ + Q E R+ +N K K++ S
Sbjct: 293 RFEILRTETLKLQEEIEELKEMIGTVPT--EFDHVINIIQ-EGRKEVNE---TKQKIVQS 346
Query: 294 NIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKS 353
N+RLV+SIAK Y G+ DL+QEG GL++ +KFD KG+KFSTYA WWI+QA+ ++
Sbjct: 347 NLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFDYKKGYKFSTYATWWIRQAITRA 406
Query: 354 LSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPK 413
++DQ+RTIR+P HM+E ++ + + E GR P EE+A+ G+ +++ +L + +
Sbjct: 407 IADQARTIRIPVHMIETINKLVRVARSMVQELGREPTPEEIAKKVGMPPEKVRKILRTSQ 466
Query: 414 APRSLDQKIG 423
P SL+ IG
Sbjct: 467 EPISLETPIG 476
>gi|383790693|ref|YP_005475267.1| sigma-70 family RNA polymerase sigma factor [Spirochaeta africana
DSM 8902]
gi|383107227|gb|AFG37560.1| RNA polymerase sigma factor, sigma-70 family [Spirochaeta africana
DSM 8902]
Length = 590
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/138 (49%), Positives = 96/138 (69%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
KD++I +N+RLV+SIAK Y G++ DLVQEG GL++ EKF+ KG+KFSTYA WW
Sbjct: 352 AKDRLIKANLRLVVSIAKKYTNRGLHFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYATWW 411
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +S+SDQ+RTIR+P HM+E +V +QL GR PN+EE+A+ G S+ R+
Sbjct: 412 IRQAITRSISDQARTIRVPVHMIEQINKVVRESRQLMQMLGREPNDEEIADRLGWSVSRV 471
Query: 406 HAVLLSPKAPRSLDQKIG 423
+V + P SL+ IG
Sbjct: 472 KSVKNVAREPISLETPIG 489
>gi|358445404|ref|ZP_09156014.1| RNA polymerase sigma factor [Corynebacterium casei UCMA 3821]
gi|356608850|emb|CCE54263.1| RNA polymerase sigma factor [Corynebacterium casei UCMA 3821]
Length = 472
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 137/243 (56%), Gaps = 11/243 (4%)
Query: 185 AAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLS----AGIQ 240
A A+V +T R+ R + +D +R LL A +E+ L+ AG+
Sbjct: 137 AGASVWDEDESATLRQARKDAELTASADSVRAYLKQIGKVALLNAEQEVSLAERIEAGLY 196
Query: 241 DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVIS 300
+L+ + +++E A + +R+LR G K+ ++ +N+RLV+S
Sbjct: 197 AQHRLDDMERLIAEGDAA-------AKLSPAQKRDLRWIARDGRKAKNHLLEANLRLVVS 249
Query: 301 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 360
+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RT
Sbjct: 250 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 309
Query: 361 IRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQ 420
IR+P HMVE ++ +++L + GR P +E+A+ ++ +++ + + P SLDQ
Sbjct: 310 IRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITEEKVLEIQQYAREPISLDQ 369
Query: 421 KIG 423
IG
Sbjct: 370 TIG 372
>gi|312898762|ref|ZP_07758151.1| RNA polymerase sigma factor RpoD [Megasphaera micronuciformis
F0359]
gi|310620193|gb|EFQ03764.1| RNA polymerase sigma factor RpoD [Megasphaera micronuciformis
F0359]
Length = 437
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 121/216 (56%), Gaps = 28/216 (12%)
Query: 208 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
V+ DP+R LL+A EE+ L+ I+ GS
Sbjct: 151 VNIDDPVRMYLKEIGRVPLLSAEEEITLAKRIE----------------AGS-------- 186
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 327
A G E+ + G + K K+ +N+RLV+SIAK Y G GM DL+QEG GL++
Sbjct: 187 AEGATPEEV----SAGNIAKKKLTDANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAV 242
Query: 328 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 387
EKFD SKG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL + GR
Sbjct: 243 EKFDYSKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRISRQLLQDKGR 302
Query: 388 HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
P EE+AE G+ ++R+ ++ + P SL+ IG
Sbjct: 303 EPLPEEIAEKMGVPVERVREIMKIAQEPVSLETPIG 338
>gi|296117756|ref|ZP_06836340.1| RNA polymerase sigma factor [Corynebacterium ammoniagenes DSM
20306]
gi|295969487|gb|EFG82728.1| RNA polymerase sigma factor [Corynebacterium ammoniagenes DSM
20306]
Length = 471
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 134/239 (56%), Gaps = 3/239 (1%)
Query: 185 AAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLK 244
A A+V +T R+ R Q +D +R LL A +E+ L+ I+ L
Sbjct: 136 AGASVWDEDESATLRQARKDAQLTASADSVRAYLKQIGKVALLNAEQEVSLAERIEAGLY 195
Query: 245 LEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKN 304
+ + + A+ + A +R+LR G K+ ++ +N+RLV+S+AK
Sbjct: 196 AQHRMDEMERLTAEGDAAAKLSPAQ---KRDLRWIARDGRKAKNHLLEANLRLVVSLAKR 252
Query: 305 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 364
Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P
Sbjct: 253 YTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIP 312
Query: 365 FHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
HMVE ++ +++L + GR P +E+A+ ++ +++ + + P SLDQ IG
Sbjct: 313 VHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITEEKVLEIQQYAREPISLDQTIG 371
>gi|411007263|ref|ZP_11383592.1| RNA polymerase principal sigma factor [Streptomyces globisporus
C-1027]
Length = 363
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 119/198 (60%), Gaps = 13/198 (6%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE++L+ ++ L E ER G+P A +L R + G
Sbjct: 79 LLTAAEEVELARRVEAGLFAE-------ERLAGTPDLDSRLAV------DLDRLVVMGRT 125
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G+KFSTYA WW
Sbjct: 126 AKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWW 185
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++L+DQ+RTIR+P H+VE RV +++L E G P E++A L+ +R+
Sbjct: 186 IRQAMSRALADQARTIRVPVHVVELINRVVRVQRRLLQERGVEPTAEDIAVELDLTPERV 245
Query: 406 HAVLLSPKAPRSLDQKIG 423
VL + P SL +G
Sbjct: 246 TEVLRLAQEPVSLHAPVG 263
>gi|386385680|ref|ZP_10070942.1| RpoD subfamily RNA polymerase sigma-70 subunit [Streptomyces
tsukubaensis NRRL18488]
gi|385666870|gb|EIF90351.1| RpoD subfamily RNA polymerase sigma-70 subunit [Streptomyces
tsukubaensis NRRL18488]
Length = 333
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 92/243 (37%), Positives = 134/243 (55%), Gaps = 13/243 (5%)
Query: 182 AEKAAANVMSVKSGSTSR--RKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGI 239
A +A A S G+T R R S E+ D + + + LL A E++LS I
Sbjct: 2 ATRAVARRQSETKGTTGRASSARASGGEIADRDLVGMYLDEIARTPLLDAAREVELSQTI 61
Query: 240 QDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVI 299
+ + R++L G A G + EL G KD+ I SN+RLV+
Sbjct: 62 EAGVYA---RQILDGEVEGE--------AGGAGREELEALAAAGERAKDEFIRSNLRLVV 110
Query: 300 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 359
++A+ Y +G+ L DL+QEG GLVR EKFD +KGFKFSTYA WWI+QA+ +S++DQSR
Sbjct: 111 AVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIADQSR 170
Query: 360 TIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLD 419
TIRLP H+VE R++ +++ E GR P E+A+ G + +R+ VL + P SL+
Sbjct: 171 TIRLPVHLVEELGRIRRVQREFNREKGREPEAAEIAQELGSTPERVTDVLDWARDPVSLN 230
Query: 420 QKI 422
+
Sbjct: 231 MAV 233
>gi|326384463|ref|ZP_08206143.1| RNA polymerase sigma factor SigB [Gordonia neofelifaecis NRRL
B-59395]
gi|326196808|gb|EGD54002.1| RNA polymerase sigma factor SigB [Gordonia neofelifaecis NRRL
B-59395]
Length = 332
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 145/264 (54%), Gaps = 36/264 (13%)
Query: 186 AANVMSVKSGSTSRRKRPSVQEVDY------SDPLRYLRATTSSSRLLTANEEMQLSAGI 239
A + ++ S + S R RP++ E D +D +R + LL A +E+ LS I
Sbjct: 2 AHSTIARPSEARSTRTRPALTEQDLDAQSPSADLVRVYLNGIGRTALLNAEQEVDLSKAI 61
Query: 240 QDLLKLEGL--REVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKD------KMI 291
+ GL + +L+ + +P ++ +Y IL ++ ++
Sbjct: 62 E-----AGLYAKHLLATKKRLTPA----------------KKRDYAILVREGEQARAHLL 100
Query: 292 TSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVR 351
+N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA+
Sbjct: 101 EANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYAKGYKFSTYATWWIRQAIS 160
Query: 352 KSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLS 411
+ ++DQSRTIRLP H+VE ++ R++L+ + GR +EE+A +G+ +++ ++
Sbjct: 161 RGMADQSRTIRLPVHLVEQVNKLARIRRELHQQLGREATDEELALESGIPAEKIADLMDH 220
Query: 412 PKAPRSLDQKIGINQNLKPSVCFI 435
+ P SLD +G N P FI
Sbjct: 221 SRDPVSLDMPVG-NDEEAPLGDFI 243
>gi|291566491|dbj|BAI88763.1| group 2 RNA polymerase sigma factor SigC [Arthrospira platensis
NIES-39]
Length = 385
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 85/262 (32%), Positives = 140/262 (53%), Gaps = 47/262 (17%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGG------------ 258
+D +R RLL +EE+ + +Q ++L LR+ +E GG
Sbjct: 28 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYVQLVELRDTEAETNGGVLQTYVNLLKVR 87
Query: 259 ---------SPTFAQWAAAAGVDQRELRRRLNYGILC----------------------K 287
P+ +WAAA GV+ EL++ + G C K
Sbjct: 88 DRLCAKLSHRPSLERWAAAGGVNLAELKQIMAEGKRCWAELANLSVEELKQVQREGIQAK 147
Query: 288 DKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIK 347
D MI +N+RLV+S+AK YQ G+ L DL+QEG GL R EKFD ++G++FSTY++WWI+
Sbjct: 148 DHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTRGYRFSTYSYWWIR 207
Query: 348 QAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHA 407
Q + ++++ QSRTIRLP H+ E ++K+A++++ E R +++A ++ ++
Sbjct: 208 QGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKSRTATIDDIATELKMTPDQIRE 267
Query: 408 VLLSPKAPR--SLDQKIGINQN 427
VLL + PR SL+ K+G +++
Sbjct: 268 VLL--RVPRSVSLETKVGTDKD 287
>gi|318080032|ref|ZP_07987364.1| RNA polymerase sigma factor [Streptomyces sp. SA3_actF]
Length = 340
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 106/164 (64%), Gaps = 3/164 (1%)
Query: 263 AQWAAAAGVDQR---ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEG 319
A+ A +D R +L R + G K ++I SN+RLV+S+AK Y G G+ + DLVQEG
Sbjct: 77 AKLAGPGPLDTRLALDLDRLVVLGRAAKRRLIESNLRLVVSVAKRYAGRGLTMLDLVQEG 136
Query: 320 CRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARK 379
GL+R EKFD ++GFKFSTYA WWI+QA+ ++L+DQ+RTIR+P H+VE RV ++
Sbjct: 137 NLGLIRAVEKFDYTRGFKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQR 196
Query: 380 QLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
L E G P++ EVA GL+ +R+ VL + P SL +G
Sbjct: 197 GLLQERGHEPSHAEVAALLGLTKERVGEVLRLAQEPVSLHTPVG 240
>gi|25028360|ref|NP_738414.1| RNA polymerase sigma factor [Corynebacterium efficiens YS-314]
gi|23493645|dbj|BAC18614.1| sigma factor SigA [Corynebacterium efficiens YS-314]
Length = 506
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 102/151 (67%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+LR G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD
Sbjct: 256 KRDLRAIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDY 315
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
SKG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L E GR P +
Sbjct: 316 SKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQELGREPTPQ 375
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
E+++ +S +++ + + P SLDQ IG
Sbjct: 376 ELSKEMDISEEKVLEIQQYAREPISLDQTIG 406
>gi|363420377|ref|ZP_09308469.1| RNA polymerase sigma factor SigB [Rhodococcus pyridinivorans AK37]
gi|359735619|gb|EHK84576.1| RNA polymerase sigma factor SigB [Rhodococcus pyridinivorans AK37]
Length = 320
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 133/225 (59%), Gaps = 14/225 (6%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+D +R + LLTA +E++L+ I+ L + L E T + +AA
Sbjct: 21 ADLVRVYLNGIGRTALLTAADEVELAKRIEAGLYAKHLLE----------TKKRLSAAK- 69
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
+R+L + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKF
Sbjct: 70 --KRDLAIIVREGQAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 127
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++L+ + GR
Sbjct: 128 DYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREAT 187
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
+EE+A +G+ ++++ +L + P SLD +G N P FI
Sbjct: 188 DEELANESGIPVEKIADLLDHSRDPVSLDMPVG-NDEEAPLGDFI 231
>gi|411117153|ref|ZP_11389640.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoriales
cyanobacterium JSC-12]
gi|410713256|gb|EKQ70757.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoriales
cyanobacterium JSC-12]
Length = 414
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 82/224 (36%), Positives = 131/224 (58%), Gaps = 29/224 (12%)
Query: 228 TANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELR---------- 277
TA++E + IQ +KL + L+ G P+ +WA AGV +L+
Sbjct: 98 TADKE---AGAIQQYVKLIEAHDRLTAHLGHRPSLERWATEAGVTVADLKPIMAEGKREW 154
Query: 278 ---RRLNY---------GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 325
+L+ GI K+ MI +N+RLV+S+AK YQ G+ L DL+QEG GL R
Sbjct: 155 AKVAKLSVEELETIQMEGIRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLER 214
Query: 326 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSEN 385
EKFD +KG++FSTYA+WWI+Q + ++++ QSRTIRLP H+ E ++K+A++++ E
Sbjct: 215 AVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEK 274
Query: 386 GRHPNNEEVAEATGLSMKRLHAVLLSPKAPR--SLDQKIGINQN 427
GR E++A+ ++ ++ VLL + PR SL+ K+G ++
Sbjct: 275 GRTATMEDIAKELDMTPPQVREVLL--RVPRSVSLETKVGKEKD 316
>gi|404482228|ref|ZP_11017455.1| RNA polymerase sigma factor RpoD [Clostridiales bacterium OBRC5-5]
gi|404344389|gb|EJZ70746.1| RNA polymerase sigma factor RpoD [Clostridiales bacterium OBRC5-5]
Length = 389
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 69/135 (51%), Positives = 93/135 (68%)
Query: 289 KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ 348
KM SN+RLV+SIAK Y G GM L DL+QEG GL+R EKFD KGFKFSTYA WWI+Q
Sbjct: 155 KMAESNLRLVVSIAKRYMGRGMQLLDLIQEGNLGLLRAVEKFDYQKGFKFSTYATWWIRQ 214
Query: 349 AVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAV 408
A+ +S++DQ+RTIR+P HMVE R+ + +++L E GR P EEVA+ L + ++ +
Sbjct: 215 AITRSIADQARTIRIPVHMVETINRLIKTQRKLVQELGREPKPEEVAKIMSLPVSKVREI 274
Query: 409 LLSPKAPRSLDQKIG 423
+ P S++ IG
Sbjct: 275 MNFALEPVSMETPIG 289
>gi|33866957|ref|NP_898516.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
WH 8102]
gi|33639558|emb|CAE08942.1| Possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 8102]
Length = 467
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 109/168 (64%), Gaps = 4/168 (2%)
Query: 262 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCR 321
+ WA A ++ REL+ L G KD MI +N+RLV+++AK YQ GM L DLVQEG
Sbjct: 203 YGAWAREANLEARELKTALRNGRRAKDHMIQANLRLVVAVAKKYQQRGMELLDLVQEGTL 262
Query: 322 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL 381
GL R EKFD ++GF+FSTYA+WWI+Q + ++++ QSRTIRLP H+ E R+K A++++
Sbjct: 263 GLERAVEKFDPTRGFRFSTYAYWWIRQGMTRAIATQSRTIRLPVHVTEKLNRIKRAQQEI 322
Query: 382 YSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR--SLDQKIGINQN 427
+ GR + ++A A LS + L + PR SLD ++G +Q+
Sbjct: 323 ATNEGRIASIADLARALKLSEDTVRQTL--ARVPRSVSLDTRVGRDQD 368
>gi|309791990|ref|ZP_07686468.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillochloris
trichoides DG-6]
gi|308225984|gb|EFO79734.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillochloris
trichoides DG6]
Length = 396
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/149 (46%), Positives = 100/149 (67%)
Query: 275 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASK 334
ELRR++ G + +M +N+RLV+SIAK Y+ G+ L DL+QEG GL+R EKFD K
Sbjct: 146 ELRRQIEKGNDARQQMAAANLRLVVSIAKRYRDRGLPLLDLIQEGSLGLLRAIEKFDHDK 205
Query: 335 GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEV 394
GFKFSTYA WWIKQA+ ++L+DQSR +RLP H+ E R++ AR+QL GR P + E+
Sbjct: 206 GFKFSTYATWWIKQALSRALADQSRLVRLPVHLGETLNRIQAARRQLTQRLGREPYDSEL 265
Query: 395 AEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
A+ +S ++L + + + P SL +G
Sbjct: 266 ADELSMSQEKLRELRRTAQDPVSLATPVG 294
>gi|292670108|ref|ZP_06603534.1| DNA-directed RNA polymerase sigma subunit RpoD [Selenomonas noxia
ATCC 43541]
gi|422343576|ref|ZP_16424504.1| RNA polymerase sigma factor rpoD [Selenomonas noxia F0398]
gi|292648296|gb|EFF66268.1| DNA-directed RNA polymerase sigma subunit RpoD [Selenomonas noxia
ATCC 43541]
gi|355378883|gb|EHG26063.1| RNA polymerase sigma factor rpoD [Selenomonas noxia F0398]
Length = 370
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 96/138 (69%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
+ ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD SKG+KFSTYA WW
Sbjct: 133 ARHRLEEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYSKGYKFSTYATWW 192
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P+ EEVA G+S+ R+
Sbjct: 193 IRQAITRAIADQARTIRIPVHMVETINKLVRISRQLLQELGRDPHPEEVAREMGISVARV 252
Query: 406 HAVLLSPKAPRSLDQKIG 423
H ++ + P SL+ IG
Sbjct: 253 HEIMKIAQEPVSLETPIG 270
>gi|441508334|ref|ZP_20990258.1| RNA polymerase sigma factor SigA [Gordonia aichiensis NBRC 108223]
gi|441447362|dbj|GAC48219.1| RNA polymerase sigma factor SigA [Gordonia aichiensis NBRC 108223]
Length = 485
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 123/203 (60%), Gaps = 19/203 (9%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 282
LL A EE++L+ I+ L E LR ++ G + AQ +R LN+
Sbjct: 197 LLNAEEEVELAKRIEAGLYATERLRRIME--SGEKISTAQ------------KRDLNWIS 242
Query: 283 --GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 340
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFST
Sbjct: 243 RDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 302
Query: 341 YAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGL 400
YA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ +
Sbjct: 303 YATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDI 362
Query: 401 SMKRLHAVLLSPKAPRSLDQKIG 423
+ +++ + + P SLDQ IG
Sbjct: 363 TPEKVLEIQQYAREPISLDQTIG 385
>gi|297625160|ref|YP_003706594.1| RpoD subfamily RNA polymerase sigma-70 subunit [Truepera
radiovictrix DSM 17093]
gi|297166340|gb|ADI16051.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Truepera
radiovictrix DSM 17093]
Length = 446
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 83/219 (37%), Positives = 127/219 (57%), Gaps = 14/219 (6%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+DP+R LLT EE+ L+ I++ E ++ L E P
Sbjct: 143 NDPVRQYLHEIGRVSLLTLEEEISLARRIEEG---EAAQKRLDEEGDSLPER-------- 191
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
+QR L+R + G + + +I +N+RLV+SIAK Y G G++ DL+QEG +GL+R EKF
Sbjct: 192 -EQRALKRIVEDGEMARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKF 250
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
+ + +KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E R P+
Sbjct: 251 EYRRRYKFSTYATWWIRQAINRAIADQARTIRIPVHMVETINKLTRTARQLQQELSREPS 310
Query: 391 NEEVAEAT--GLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
EEVAEA G S +++ V + P SL+ IG ++
Sbjct: 311 YEEVAEAMGPGWSAEKVEEVFKVSQEPVSLETPIGDEKD 349
>gi|451338960|ref|ZP_21909486.1| RNA polymerase sigma factor SigB [Amycolatopsis azurea DSM 43854]
gi|449418339|gb|EMD23930.1| RNA polymerase sigma factor SigB [Amycolatopsis azurea DSM 43854]
Length = 317
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 101/153 (66%), Gaps = 1/153 (0%)
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 342
G + K+ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD SKGFKFSTYA
Sbjct: 77 GHVAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYSKGFKFSTYA 136
Query: 343 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSM 402
WWI+QA+ + ++DQ RTIRLP H+VE ++ ++ L+ + GR +EE+A +G+
Sbjct: 137 TWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQQLGRDATHEELAAESGIPA 196
Query: 403 KRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
++ +L + P SLD +G ++ P FI
Sbjct: 197 HKISDLLDHSRDPVSLDMPVGTEED-APLGDFI 228
>gi|345849581|ref|ZP_08802591.1| RNA polymerase principal sigma factor [Streptomyces zinciresistens
K42]
gi|345638994|gb|EGX60491.1| RNA polymerase principal sigma factor [Streptomyces zinciresistens
K42]
Length = 332
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 72/154 (46%), Positives = 101/154 (65%)
Query: 269 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 328
AG + EL ++ G KD I SN+RLV+++A+ Y +G+ L DL+QEG GLVR E
Sbjct: 79 AGATREELEALVDEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVE 138
Query: 329 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH 388
KFD KGFKFSTYA WWI+QA+ +S++DQSRTIRLP H+VE R++ +++ ENGR
Sbjct: 139 KFDYRKGFKFSTYATWWIRQAITRSIADQSRTIRLPVHLVEELGRIRRVQREFNRENGRD 198
Query: 389 PNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKI 422
P E+A G + +R+ VL + P SL+ +
Sbjct: 199 PEPAEIAAELGSTPERVSDVLDWARDPVSLNMSV 232
>gi|302338588|ref|YP_003803794.1| RpoD subfamily RNA polymerase sigma-70 subunit [Spirochaeta
smaragdinae DSM 11293]
gi|301635773|gb|ADK81200.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Spirochaeta
smaragdinae DSM 11293]
Length = 612
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 70/138 (50%), Positives = 96/138 (69%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
KD++I +N+RLV+SIAK Y G++ DLVQEG GL++ EKF+ SKGFKFSTYA WW
Sbjct: 374 AKDRLIQANLRLVVSIAKKYTNRGLHFFDLVQEGNIGLIKAVEKFEYSKGFKFSTYATWW 433
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +S+SDQ+RTIR+P HM+E +V +QL GR P +EEVAE G ++ R+
Sbjct: 434 IRQAITRSISDQARTIRVPVHMIEQINKVVRESRQLMQILGRDPTDEEVAERLGWTVLRV 493
Query: 406 HAVLLSPKAPRSLDQKIG 423
+V + P SL+ IG
Sbjct: 494 KSVKNVAREPISLETPIG 511
>gi|386840029|ref|YP_006245087.1| RNA polymerase sigma factor [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374100330|gb|AEY89214.1| RNA polymerase sigma factor [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451793323|gb|AGF63372.1| RNA polymerase sigma factor [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 374
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 129/226 (57%), Gaps = 19/226 (8%)
Query: 203 PSVQEVDYSDP-----LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG 257
P+V V+ P +YLR LLTA EE++L+ ++ L E E+ G
Sbjct: 63 PAVARVESGGPSADLFRQYLREIGRIP-LLTAAEEVELARRVEAGLFAE-------EKLG 114
Query: 258 GSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+P A ++L R + G + K ++I +N+RLV+S+AK Y G G+ + DLVQ
Sbjct: 115 TTPDLDSELA------QDLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 168
Query: 318 EGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEA 377
EG GL+R EKFD ++G+KFSTYA WWI+QA+ ++L+DQ+RTIR+P H+VE RV
Sbjct: 169 EGNLGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRV 228
Query: 378 RKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
++++ E G P EEV L +R+ VL + P SL +G
Sbjct: 229 QRRMLQERGYEPTAEEVGAHLDLPPERVGEVLRLAQEPVSLHAPVG 274
>gi|403730493|ref|ZP_10949025.1| RNA polymerase sigma factor SigA, partial [Gordonia rhizosphera
NBRC 16068]
gi|403202474|dbj|GAB93356.1| RNA polymerase sigma factor SigA, partial [Gordonia rhizosphera
NBRC 16068]
Length = 442
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 131/230 (56%), Gaps = 19/230 (8%)
Query: 199 RRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQ-DLLKLEGLREVLSERCG 257
R+ R + +D +R LL A EE++L+ I+ L E +R ++ G
Sbjct: 165 RQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATERMRRIME--SG 222
Query: 258 GSPTFAQWAAAAGVDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQ 313
+ AQ +R LN+ G K+ ++ +N+RLV+S+AK Y G GM
Sbjct: 223 EKLSTAQ------------KRDLNWISRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFL 270
Query: 314 DLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYR 373
DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE +
Sbjct: 271 DLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINK 330
Query: 374 VKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
+ +++L + GR P EE+A+ ++ +++ + + P SLDQ IG
Sbjct: 331 LGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIG 380
>gi|300784474|ref|YP_003764765.1| RNA polymerase primary-like sigma factor [Amycolatopsis
mediterranei U32]
gi|399536359|ref|YP_006549021.1| RNA polymerase primary-like sigma factor [Amycolatopsis
mediterranei S699]
gi|299793988|gb|ADJ44363.1| RNA polymerase primary-like sigma factor [Amycolatopsis
mediterranei U32]
gi|398317129|gb|AFO76076.1| RNA polymerase primary-like sigma factor [Amycolatopsis
mediterranei S699]
Length = 343
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 101/153 (66%), Gaps = 1/153 (0%)
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 342
G + K+ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD SKGFKFSTYA
Sbjct: 103 GHVAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYSKGFKFSTYA 162
Query: 343 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSM 402
WWI+QA+ + ++DQ RTIRLP H+VE ++ ++ L+ + GR +EE+A +G+
Sbjct: 163 TWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQQLGRDATHEELAAESGIPA 222
Query: 403 KRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
++ +L + P SLD +G ++ P FI
Sbjct: 223 HKISDLLDHSRDPVSLDMPVGTEED-APLGDFI 254
>gi|209525810|ref|ZP_03274346.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|423064796|ref|ZP_17053586.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|209493783|gb|EDZ94102.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|406714039|gb|EKD09207.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 407
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 84/262 (32%), Positives = 140/262 (53%), Gaps = 47/262 (17%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGG------------ 258
+D +R RLL +EE+ + +Q ++L LR+ +E GG
Sbjct: 50 TDLVRLYLQEIGRVRLLGKDEEVSEAQKVQRYVQLVELRDTEAETKGGVLQTYVNLLKVR 109
Query: 259 ---------SPTFAQWAAAAGVDQRELRRRLNYGILC----------------------K 287
P+ +WAAA GV+ +L++ + G C K
Sbjct: 110 DRLCAKLSHRPSLERWAAAGGVNVAQLKQIMAEGKRCWAELANLSVEELKQVQREGLQAK 169
Query: 288 DKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIK 347
D MI +N+RLV+S+AK YQ G+ L DL+QEG GL R EKFD ++G++FSTY++WWI+
Sbjct: 170 DHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTRGYRFSTYSYWWIR 229
Query: 348 QAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHA 407
Q + ++++ QSRTIRLP H+ E ++K+A++++ E R +++A ++ ++
Sbjct: 230 QGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKSRTATIDDIATELKMTPDQIRE 289
Query: 408 VLLSPKAPR--SLDQKIGINQN 427
VLL + PR SL+ K+G +++
Sbjct: 290 VLL--RVPRSVSLETKVGTDKD 309
>gi|123967051|ref|YP_001012132.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9515]
gi|123201417|gb|ABM73025.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9515]
Length = 333
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 123/202 (60%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ +E+ L +Q+ +++E + E P+ + AA + ++++RL G
Sbjct: 38 LLSHEQEITLGRQVQEYMQVERAELEIIELTDNKPSVEELAAKLNLSSSQIKKRLRAGQR 97
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+WW
Sbjct: 98 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYAYWW 157
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q + ++++++SR IRLP H+ E ++K+ +++L E R P E+A+ L +
Sbjct: 158 IRQGITRAIAEKSRAIRLPIHITEMLNKLKKGQRELSQEMSRTPTISELAKYVELPEDDV 217
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
++ P SL+ K+G ++
Sbjct: 218 KDLMCKAGQPVSLETKVGDGED 239
>gi|402312074|ref|ZP_10831004.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium ICM7]
gi|400370735|gb|EJP23717.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium ICM7]
Length = 389
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 69/135 (51%), Positives = 93/135 (68%)
Query: 289 KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ 348
KM SN+RLV+SIAK Y G GM L DL+QEG GL+R EKFD KGFKFSTYA WWI+Q
Sbjct: 155 KMAESNLRLVVSIAKRYMGRGMQLLDLIQEGNLGLLRAVEKFDYQKGFKFSTYATWWIRQ 214
Query: 349 AVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAV 408
A+ +S++DQ+RTIR+P HMVE R+ + +++L E GR P EEVA+ L + ++ +
Sbjct: 215 AITRSIADQARTIRIPVHMVETINRLIKTQRKLVQELGREPKPEEVAKIMSLPVSKVREI 274
Query: 409 LLSPKAPRSLDQKIG 423
+ P S++ IG
Sbjct: 275 MNFALEPVSMETPIG 289
>gi|453073906|ref|ZP_21976704.1| RNA polymerase sigma factor [Rhodococcus triatomae BKS 15-14]
gi|452765392|gb|EME23649.1| RNA polymerase sigma factor [Rhodococcus triatomae BKS 15-14]
Length = 454
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 84/231 (36%), Positives = 131/231 (56%), Gaps = 21/231 (9%)
Query: 199 RRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGG 258
R+ R + +D +R LL A EE++L+ I+ L L + +E+
Sbjct: 139 RQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMQEFTEKGEK 198
Query: 259 SPTFAQWAAAAGVDQRELRRRLNYGILCKD------KMITSNIRLVISIAKNYQGAGMNL 312
P AQ RR LN+ +C+D ++ +N+RLV+S+AK Y G GM
Sbjct: 199 LPV-AQ------------RRDLNW--ICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAF 243
Query: 313 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY 372
DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE
Sbjct: 244 LDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVIN 303
Query: 373 RVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
++ +++L + GR P EE+A+ ++ +++ + + P SLDQ IG
Sbjct: 304 KLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIG 354
>gi|434400128|ref|YP_007134132.1| RNA polymerase, sigma subunit, RpsC/SigC [Stanieria cyanosphaera
PCC 7437]
gi|428271225|gb|AFZ37166.1| RNA polymerase, sigma subunit, RpsC/SigC [Stanieria cyanosphaera
PCC 7437]
Length = 416
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 107/163 (65%), Gaps = 2/163 (1%)
Query: 264 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 323
+WA +EL R GI K+ MI +N+RLV+S+AK YQ G+ L DL+QEG GL
Sbjct: 155 RWAEVVNCSVKELERIQRDGIRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGL 214
Query: 324 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYS 383
R EKFD +KG++FSTYA+WWI+Q + ++++ QSRTIRLP H+ E ++K+A++++
Sbjct: 215 ERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQ 274
Query: 384 ENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQ 426
E G P E++A+ ++ ++ VLL + PRS+ +I + +
Sbjct: 275 EKGHTPRIEDLAQELDMTAGQIREVLL--RVPRSVSLEIKVGK 315
>gi|148240795|ref|YP_001226182.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp. WH
7803]
gi|147849334|emb|CAK24885.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 376
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 93/261 (35%), Positives = 137/261 (52%), Gaps = 46/261 (17%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLS--------------------AGIQDLLKLEGLRE 250
+D LR LLT+ EE+ LS A I+ LL LE L++
Sbjct: 19 NDLLRLYLQDIGRVDLLTSEEEVTLSRQVQQRERLLVQERDLSTRIAAIRVLLDLEELQQ 78
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILC----------------------KD 288
+ PT +WA AA + EL R LN G +D
Sbjct: 79 REANHISHWPTRQEWARAAEMPLVELNRVLNEGYTLWAEESGLEAKELQRRLREGRRARD 138
Query: 289 KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ 348
+MI +N+RLV+++AK YQ GM L DLVQEG GL R EKFD ++GF+FSTYA+WWI+Q
Sbjct: 139 RMIQANLRLVVAVAKKYQQRGMELLDLVQEGTLGLERAVEKFDPTRGFRFSTYAYWWIRQ 198
Query: 349 AVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAV 408
+ ++++ QSRTIRLP H+ E R+K ++++ SE GR + ++A+ G+S +
Sbjct: 199 GITRAIATQSRTIRLPVHITEKLNRIKRVQQEIASEQGRLASVSDLAKELGVSEDTVRQT 258
Query: 409 LLSPKAPR--SLDQKIGINQN 427
L + PR SL+ ++G +Q+
Sbjct: 259 L--ARVPRSVSLETRVGKDQD 277
>gi|317969234|ref|ZP_07970624.1| RNA polymerase sigma factor, sigma-70 family protein [Synechococcus
sp. CB0205]
Length = 311
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 118/185 (63%), Gaps = 11/185 (5%)
Query: 225 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 284
+LLT +E+ L +Q +++L ERC + + + +++R +R G
Sbjct: 16 QLLTPEQELMLGRKVQAMVQLH-------ERCAMAGGVGEACSYNDIEKRTMR----VGE 64
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
KD+MIT+N+RLV+++AK YQG G++L DL+QEG GL R EK+D ++G +FSTYA+W
Sbjct: 65 RAKDQMITANLRLVVNLAKRYQGKGLDLLDLIQEGTLGLTRAVEKYDPTRGHRFSTYAYW 124
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+Q + ++LS QSRTIR+P ++ E R++ A+ +L NG PN++++A A GL +
Sbjct: 125 WIRQGLNRALSTQSRTIRIPVNVNEKLTRLRAAKARLMQRNGMAPNSQQLATALGLPLDE 184
Query: 405 LHAVL 409
+ +L
Sbjct: 185 IEDLL 189
>gi|308232215|ref|ZP_07415319.2| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu001]
gi|308373480|ref|ZP_07667590.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu005]
gi|308214639|gb|EFO74038.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu001]
gi|308337452|gb|EFP26303.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu005]
Length = 413
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 121/198 (61%), Gaps = 9/198 (4%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L LSER P AQ +R++ G
Sbjct: 125 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLPA-AQ--------RRDMMWICRDGDR 175
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 176 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 235
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 236 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 295
Query: 406 HAVLLSPKAPRSLDQKIG 423
+ + P SLDQ IG
Sbjct: 296 LEIQQYAREPISLDQTIG 313
>gi|227499774|ref|ZP_03929874.1| DNA-directed RNA polymerase sigma subunit RpoD [Anaerococcus
tetradius ATCC 35098]
gi|227218160|gb|EEI83426.1| DNA-directed RNA polymerase sigma subunit RpoD [Anaerococcus
tetradius ATCC 35098]
Length = 606
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 67/152 (44%), Positives = 103/152 (67%)
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
D EL+R + K K+ +N+RLV+SIAK Y G GM+ DL+QEG GL++ +K+D
Sbjct: 356 DFMELKRAVINSKRAKQKLAETNLRLVVSIAKKYVGRGMSFLDLIQEGNMGLMKAVDKYD 415
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
++GFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+N
Sbjct: 416 YNRGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLVQDLGRDPSN 475
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
EE+AE G+ + ++ + + P SL+ IG
Sbjct: 476 EEIAEQMGIEVDKVQEIRKISQEPVSLETPIG 507
>gi|422303174|ref|ZP_16390528.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9806]
gi|389791889|emb|CCI12331.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9806]
Length = 435
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 121/212 (57%), Gaps = 22/212 (10%)
Query: 234 QLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA----------------------GV 271
Q A +Q +KL +R+ L+ R P+ +WA A G+
Sbjct: 122 QGDAQVQQFVKLIAVRDQLTARLAHRPSLERWAKTAQISVSELKNALKAGKQHWAHLAGL 181
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+ EL + G K++MI +N+RLV+S+AK YQ G+ L DL+QEG GL R EKFD
Sbjct: 182 EVGELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFD 241
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
+KG++FSTYA+WWI+Q + ++++ QSR IRLP H+ E ++K+A++++ GR
Sbjct: 242 PTKGYRFSTYAYWWIRQGMTRAIATQSRMIRLPVHITEKLNKIKKAQRKISQMRGRTATV 301
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
EE+A+ L+ + + VL++ SL+ K+G
Sbjct: 302 EEIAQELALTPEAVREVLMTVPRSVSLEIKVG 333
>gi|334564689|ref|ZP_08517680.1| RNA polymerase sigma factor [Corynebacterium bovis DSM 20582]
Length = 577
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 103/153 (67%)
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
+++R+LR G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 325 MNRRDLREIERDGRRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 384
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P
Sbjct: 385 DYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPA 444
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
EE+A +S+ ++ + + P SLDQ IG
Sbjct: 445 PEELAREMDISVDKVLEIQQYAREPISLDQTIG 477
>gi|390559809|ref|ZP_10244092.1| RNA polymerase sigma factor [Nitrolancetus hollandicus Lb]
gi|390173609|emb|CCF83391.1| RNA polymerase sigma factor [Nitrolancetus hollandicus Lb]
Length = 537
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 100/149 (67%), Gaps = 3/149 (2%)
Query: 275 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASK 334
E+RRR G + ++ +N+RLV+S+AK Y G GM++ DLVQEG GL+R EKF K
Sbjct: 292 EMRRR---GDFARMRLTEANLRLVVSVAKKYVGRGMSMLDLVQEGNLGLIRAVEKFQHHK 348
Query: 335 GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEV 394
GFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE R+ ++L E GR P +EE+
Sbjct: 349 GFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINRLIRTSRRLQQERGREPTSEEI 408
Query: 395 AEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
A G++ ++ ++ + P SL+ IG
Sbjct: 409 AAEMGMAPDKIREIMKISQEPVSLEMPIG 437
>gi|384147741|ref|YP_005530557.1| RNA polymerase sigma factor SigB [Amycolatopsis mediterranei S699]
gi|340525895|gb|AEK41100.1| RNA polymerase sigma factor SigB [Amycolatopsis mediterranei S699]
Length = 317
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 101/153 (66%), Gaps = 1/153 (0%)
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 342
G + K+ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD SKGFKFSTYA
Sbjct: 77 GHVAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYSKGFKFSTYA 136
Query: 343 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSM 402
WWI+QA+ + ++DQ RTIRLP H+VE ++ ++ L+ + GR +EE+A +G+
Sbjct: 137 TWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQQLGRDATHEELAAESGIPA 196
Query: 403 KRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
++ +L + P SLD +G ++ P FI
Sbjct: 197 HKISDLLDHSRDPVSLDMPVGTEED-APLGDFI 228
>gi|379709871|ref|YP_005265076.1| RNA polymerase sigma factor SigB [Nocardia cyriacigeorgica GUH-2]
gi|374847370|emb|CCF64440.1| RNA polymerase sigma factor SigB [Nocardia cyriacigeorgica GUH-2]
Length = 322
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 138/240 (57%), Gaps = 18/240 (7%)
Query: 200 RKRPSVQEVDYSDP----LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 255
R R S ++D P +R + LLTA +E++L+ I+ L + L E
Sbjct: 8 RVRASDSDLDAQSPAADLVRVYLNGIGRTALLTAADEVELAKRIEAGLYAQHLLE----- 62
Query: 256 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 315
T + +AA +R+L + G + ++ +N+RLV+S+AK Y G GM L DL
Sbjct: 63 -----TGKRLSAAR---KRDLAVIVREGQAARSHLLEANLRLVVSLAKRYTGRGMPLLDL 114
Query: 316 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVK 375
+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++
Sbjct: 115 IQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLA 174
Query: 376 EARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
+++L+ + GR ++E+A +G+ ++++ +L + P SLD +G N P FI
Sbjct: 175 RIKRELHQQLGREATDDELANESGIPVEKIADLLDHSRDPVSLDMPVG-NDEEAPLGDFI 233
>gi|340794544|ref|YP_004760007.1| RNA polymerase sigma factor A [Corynebacterium variabile DSM 44702]
gi|340534454|gb|AEK36934.1| RNA polymerase sigma factor A [Corynebacterium variabile DSM 44702]
Length = 536
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 123/202 (60%), Gaps = 17/202 (8%)
Query: 226 LLTANEEMQLS----AGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLN 281
LL A +E+ L+ AG+ K+E ++E E+ SP + +R+LR
Sbjct: 248 LLNAEQEVSLAKRIEAGLYATYKMEQIKES-GEKV--SP----------MQKRDLREIDR 294
Query: 282 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 341
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTY
Sbjct: 295 DGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTY 354
Query: 342 AHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLS 401
A WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++
Sbjct: 355 ATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDIT 414
Query: 402 MKRLHAVLLSPKAPRSLDQKIG 423
++ + + P SLDQ IG
Sbjct: 415 EDKVLEIQQYAREPISLDQTIG 436
>gi|297566693|ref|YP_003685665.1| RpoD subfamily RNA polymerase sigma-70 subunit [Meiothermus
silvanus DSM 9946]
gi|296851142|gb|ADH64157.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Meiothermus
silvanus DSM 9946]
Length = 483
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 134/257 (52%), Gaps = 32/257 (12%)
Query: 203 PSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDL------------LKLEGLRE 250
P V SDP+R LLT EE+ L+ ++D L+ + +R+
Sbjct: 130 PLTTRVSTSDPVRQYLHEIGQVPLLTLEEEIDLARRVEDGVASAQFLAQETGLETDLIRQ 189
Query: 251 VLSERCGGSPTFAQWAAA---------AGVDQR------ELRRRLNY---GILCKDKMIT 292
VL + G Q VD R E++R L+ G L + +I
Sbjct: 190 VLRAQVQGGARIHQVPGMEVKLDPETITAVDSRLRALPREVKRHLHIARDGELARQHLIE 249
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 352
+N+RLV+SIAK Y G G++ DL+QEG +GL+R EKF+ + +KFSTYA WWI+QA+ +
Sbjct: 250 ANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRYKFSTYATWWIRQAINR 309
Query: 353 SLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEAT--GLSMKRLHAVLL 410
+++DQ+RTIR+P HMVE ++ +Q+ E GR P EE++EA G K++
Sbjct: 310 AIADQARTIRIPVHMVETINKLTRTARQMQQELGREPTYEEISEAMGPGWDAKKVEETFK 369
Query: 411 SPKAPRSLDQKIGINQN 427
+ P SL+ IG ++
Sbjct: 370 IAQEPVSLETPIGDEKD 386
>gi|23978335|dbj|BAC21137.1| principal sigma factor [Phormidium sp. IAM M-99]
Length = 203
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 94/137 (68%)
Query: 291 ITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAV 350
+ SN RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+
Sbjct: 1 VQSNFRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAI 60
Query: 351 RKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 410
++++DQSRTIRLP H+ E R+K+ K L E GR P EE+A +++++L +
Sbjct: 61 TRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAK 120
Query: 411 SPKAPRSLDQKIGINQN 427
S + P SL+ IG ++
Sbjct: 121 SAQLPISLETPIGKEED 137
>gi|218439766|ref|YP_002378095.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218172494|gb|ACK71227.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 418
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 118/200 (59%), Gaps = 24/200 (12%)
Query: 249 REVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYG----------------------ILC 286
R+ L+ + G P+ +WA AA V E+++ LN G I
Sbjct: 120 RDQLTSQLGHRPSLEKWADAAEVSVFEVKQILNEGKRHWANLAGLKVQELEQIQKAGIEA 179
Query: 287 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI 346
K+ MI +N+RLV+S+AK YQ G+ L DL+QEG GL R EKFD +KG++FSTYA+WWI
Sbjct: 180 KNHMIKANLRLVVSVAKRYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWWI 239
Query: 347 KQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLH 406
+Q + ++++ QSR IRLP H+ E ++K+A++++ GR P EE+A ++ ++
Sbjct: 240 RQGITRAIATQSRIIRLPVHITEKLNKIKKAQRKMAQIKGRTPTMEELAVEVDMTAPQIR 299
Query: 407 AVLLSPKAPRSLDQKIGINQ 426
VL+ + PRS+ +I + +
Sbjct: 300 EVLM--RVPRSVSLEIKVGK 317
>gi|354615678|ref|ZP_09033420.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Saccharomonospora
paurometabolica YIM 90007]
gi|353219969|gb|EHB84465.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Saccharomonospora
paurometabolica YIM 90007]
Length = 347
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 102/153 (66%), Gaps = 1/153 (0%)
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 342
G + K+ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD +KGFKFSTYA
Sbjct: 107 GQVAKNHLLQANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYTKGFKFSTYA 166
Query: 343 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSM 402
WWI+QA+ + ++DQ RTIRLP H+VE ++ ++ L+ + GR NEE+A +G++
Sbjct: 167 TWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQKLGREATNEELAAESGIAE 226
Query: 403 KRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
++ +L + P SLD +G ++ P FI
Sbjct: 227 HKVSNLLDHARDPVSLDMPVGSEED-APLGDFI 258
>gi|283797719|ref|ZP_06346872.1| RNA polymerase sigma factor RpoD [Clostridium sp. M62/1]
gi|291074616|gb|EFE11980.1| RNA polymerase sigma factor RpoD [Clostridium sp. M62/1]
gi|295092057|emb|CBK78164.1| RNA polymerase, sigma 70 subunit, RpoD [Clostridium cf.
saccharolyticum K10]
Length = 372
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 95/138 (68%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EK+D SKGFKFSTYA WW
Sbjct: 135 AKKRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKYDYSKGFKFSTYATWW 194
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +S++DQ+RTIR+P HMVE R+ +QL E GR P+ EE+AE + ++R+
Sbjct: 195 IRQAITRSIADQARTIRIPVHMVETINRLIRTSRQLLQELGREPSAEELAEKLDMPVERV 254
Query: 406 HAVLLSPKAPRSLDQKIG 423
++ + P SL+ IG
Sbjct: 255 REIMKISQDPVSLETPIG 272
>gi|355670644|ref|ZP_09057391.1| RNA polymerase sigma factor rpoD [Clostridium citroniae WAL-17108]
gi|354816081|gb|EHF00670.1| RNA polymerase sigma factor rpoD [Clostridium citroniae WAL-17108]
Length = 374
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 93/138 (67%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
+ ++ SN+RLV+SIAK Y G GM DL+QEG GL++ EKFD +KG+KFSTYA WW
Sbjct: 136 ARKRLAESNLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDYTKGYKFSTYATWW 195
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +S++DQ+RTIR+P HMVE R+ +QL E GR P EE+A L ++R+
Sbjct: 196 IRQAITRSIADQARTIRIPVHMVETINRLVRTSRQLLQELGREPTTEEIAARVDLPVERV 255
Query: 406 HAVLLSPKAPRSLDQKIG 423
+L + P SL+ IG
Sbjct: 256 SEILKMSQEPVSLETPIG 273
>gi|238060708|ref|ZP_04605417.1| RNA polymerase sigma factor rpoD [Micromonospora sp. ATCC 39149]
gi|237882519|gb|EEP71347.1| RNA polymerase sigma factor rpoD [Micromonospora sp. ATCC 39149]
Length = 331
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 84/202 (41%), Positives = 122/202 (60%), Gaps = 13/202 (6%)
Query: 222 SSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLN 281
S + LL A E+ LS I+ L E L E ++R AGVD+ +L R
Sbjct: 45 SRTPLLDAATEVDLSKSIEAGLYAEHLLE--TDRV-----------PAGVDRDDLERVAA 91
Query: 282 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 341
G KD I +N+RLV+SIA+ Y +GM + DL+QEG GLVR EKFD +GFKFSTY
Sbjct: 92 EGERAKDLFIRANLRLVVSIARRYVRSGMPMLDLIQEGNTGLVRAVEKFDYERGFKFSTY 151
Query: 342 AHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLS 401
A WWI+QA+ ++++ Q RT+RLP H+VE R++ A +QL E G P E++A A G++
Sbjct: 152 ATWWIRQAISRAIAQQERTVRLPVHLVEDVNRMRNAARQLTRELGSDPEPEQIAAALGVT 211
Query: 402 MKRLHAVLLSPKAPRSLDQKIG 423
++R++ ++ + SLD +G
Sbjct: 212 VERVNELVRWSQDTVSLDTPVG 233
>gi|315226631|ref|ZP_07868419.1| DNA-directed RNA polymerase sigma subunit RpoD [Parascardovia
denticolens DSM 10105 = JCM 12538]
gi|315120763|gb|EFT83895.1| DNA-directed RNA polymerase sigma subunit RpoD [Parascardovia
denticolens DSM 10105 = JCM 12538]
Length = 690
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 121/213 (56%), Gaps = 11/213 (5%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SDP++ LL A +E+ LS I+ L + L L TF +
Sbjct: 387 SDPVKDYLKQIGRVNLLNAQQEVDLSERIEAGLYAQHL---LDTTPADQMTFQR------ 437
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
+REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 438 --KRELKWAANDGRKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKF 495
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++Q+ + GR P
Sbjct: 496 DWKKGFKFSTYATWWIRQAITRAMADQARTIRVPVHMVEVINKLSRVQRQMLQDLGREPT 555
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
+E+A + ++++ V + P SL +G
Sbjct: 556 PDELARELDMPVEKVQEVQKYGREPISLHTPLG 588
>gi|40353301|gb|AAR84414.1| essential primary sigma 70 factor [Frankia sp. ORS020607]
gi|40353303|gb|AAR84415.1| essential primary sigma 70 factor [Frankia sp. CcI3]
gi|40353305|gb|AAR84416.1| essential primary sigma 70 factor [Frankia sp. CeD]
Length = 217
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 66/141 (46%), Positives = 98/141 (69%)
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 342
G + K K++ +N+RLV+SIAK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA
Sbjct: 29 GQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 88
Query: 343 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSM 402
WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+ EE+A+ L+
Sbjct: 89 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPSPEEIAKEMDLTP 148
Query: 403 KRLHAVLLSPKAPRSLDQKIG 423
++ +L + P SL+ IG
Sbjct: 149 DKVREILKVSQEPVSLETPIG 169
>gi|153304|gb|AAA26762.1| principal sigma-like factor [Streptomyces aureofaciens]
gi|450077|prf||1920369A RNA polymerase:SUBUNIT=sigma
Length = 393
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 82/198 (41%), Positives = 119/198 (60%), Gaps = 13/198 (6%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE+ L+ ++ L E E+ GG+ A +L R + G +
Sbjct: 109 LLTAAEEVDLARRVEAGLFAE-------EKLGGAADLDSQLAV------DLDRLVVMGRM 155
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++I SN+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G+KFSTYA WW
Sbjct: 156 AKRRLIESNLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWW 215
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++L+DQ+RTIR+P H+VE RV ++++ E G P EEVA L+ +R+
Sbjct: 216 IRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTAEEVAVHLELTPERV 275
Query: 406 HAVLLSPKAPRSLDQKIG 423
VL + P SL +G
Sbjct: 276 LEVLRLAQEPVSLHAPVG 293
>gi|261367093|ref|ZP_05979976.1| RNA polymerase sigma factor RpoD [Subdoligranulum variabile DSM
15176]
gi|282571217|gb|EFB76752.1| RNA polymerase sigma factor RpoD [Subdoligranulum variabile DSM
15176]
Length = 364
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 96/141 (68%)
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 342
G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD +KGFKFSTYA
Sbjct: 124 GEKAKQRLSEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDHTKGFKFSTYA 183
Query: 343 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSM 402
WWI+QA+ ++++DQ+RTIR+P HMVE +VK+ QL E G P+ EE+AE +S+
Sbjct: 184 TWWIRQAITRAIADQARTIRIPVHMVETINKVKKVSSQLLHEYGHDPSAEEIAERLDMSV 243
Query: 403 KRLHAVLLSPKAPRSLDQKIG 423
++ ++ + P SL+ IG
Sbjct: 244 DKVREIMRVAQEPVSLETPIG 264
>gi|418053337|ref|ZP_12691407.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Mycobacterium
rhodesiae JS60]
gi|353178512|gb|EHB44091.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Mycobacterium
rhodesiae JS60]
Length = 319
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 109/164 (66%), Gaps = 7/164 (4%)
Query: 278 RRLNYGILCKD------KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
R+ + I+ +D ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 68 RKRDLAIIVRDGQAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFD 127
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++++ GR +
Sbjct: 128 YTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQSLGREATD 187
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
+E+AE +G+ +++++ +L + P SLD +G ++ P FI
Sbjct: 188 DELAEESGIPVEKINDLLEHSRDPVSLDMPVGSDEE-APLGDFI 230
>gi|145224529|ref|YP_001135207.1| RNA polymerase sigma factor SigB [Mycobacterium gilvum PYR-GCK]
gi|145217015|gb|ABP46419.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium gilvum
PYR-GCK]
Length = 329
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 109/163 (66%), Gaps = 1/163 (0%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 79 KRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 138
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++++ GR +E
Sbjct: 139 AKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDE 198
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
E+AE +G+ +++++ +L + P SLD +G ++ P FI
Sbjct: 199 ELAEESGIPVEKINDLLEHSRDPVSLDMPVGSDEE-APLGDFI 240
>gi|453382628|dbj|GAC82923.1| RNA polymerase sigma factor SigA [Gordonia paraffinivorans NBRC
108238]
Length = 527
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 123/203 (60%), Gaps = 19/203 (9%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 282
LL A EE++L+ I+ L E LR ++ G + AQ +R LN+
Sbjct: 239 LLNAEEEVELAKRIEAGLYATERLRRIME--SGEKISTAQ------------KRDLNWIS 284
Query: 283 --GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 340
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFST
Sbjct: 285 RDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 344
Query: 341 YAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGL 400
YA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ +
Sbjct: 345 YATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDI 404
Query: 401 SMKRLHAVLLSPKAPRSLDQKIG 423
+ +++ + + P SLDQ IG
Sbjct: 405 TPEKVLEIQQYAREPISLDQTIG 427
>gi|269127406|ref|YP_003300776.1| RpoD subfamily RNA polymerase sigma-70 subunit [Thermomonospora
curvata DSM 43183]
gi|268312364|gb|ACY98738.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermomonospora
curvata DSM 43183]
Length = 385
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 90/223 (40%), Positives = 125/223 (56%), Gaps = 27/223 (12%)
Query: 208 VDYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWA 266
V SD +R YLR LLTA EE++L+ I+ L E + A
Sbjct: 84 VPTSDLVRIYLREIGRVP-LLTAEEEVELAKTIEAGLFAE----------------EKLA 126
Query: 267 AAAGVDQRELRRRLNY------GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGC 320
AA + RE RL+ G K ++I +N+RLV+SIAK Y G GM DL+QEG
Sbjct: 127 RAAFISPRE---RLDLELIAREGARAKQRLIEANLRLVVSIAKRYVGRGMLFLDLIQEGN 183
Query: 321 RGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQ 380
GL+R EKFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++Q
Sbjct: 184 LGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQ 243
Query: 381 LYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
L+ + GR P E+ GL +R+ + + P SL IG
Sbjct: 244 LHQDLGREPTPAEIGAEMGLPAERVVEIQRIAQEPVSLQSPIG 286
>gi|333994743|ref|YP_004527356.1| RNA polymerase sigma factor RpoD (Sigma-70) [Treponema
azotonutricium ZAS-9]
gi|333736616|gb|AEF82565.1| RNA polymerase sigma factor RpoD (Sigma-70) [Treponema
azotonutricium ZAS-9]
Length = 587
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 68/138 (49%), Positives = 95/138 (68%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
KD++I +N+RLV+SIAK Y G++ DLVQEG GL++ EKF+ KGFKFSTYA WW
Sbjct: 349 AKDRLIKANLRLVVSIAKKYTNRGLHFFDLVQEGNIGLIKAVEKFEYQKGFKFSTYATWW 408
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +S+SDQ+RTIR+P HM+E +V +QL GR P +EE+AE G + +R+
Sbjct: 409 IRQAITRSISDQARTIRVPVHMIEQINKVVRESRQLMQVLGREPTDEEIAERLGWTAQRV 468
Query: 406 HAVLLSPKAPRSLDQKIG 423
+V + P SL+ IG
Sbjct: 469 KSVKNVAREPISLETPIG 486
>gi|332709863|ref|ZP_08429819.1| RNA polymerase, sigma subunit, RpsC/SigC [Moorea producens 3L]
gi|332351234|gb|EGJ30818.1| RNA polymerase, sigma subunit, RpsC/SigC [Moorea producens 3L]
gi|332651114|gb|AEE81158.1| putative RNA polymerase sigma subunit [Moorea producens 3L]
Length = 417
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 138/260 (53%), Gaps = 46/260 (17%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR--------------------- 249
+D +R RLL +EE+ + +Q +KL LR
Sbjct: 59 TDLVRLYLQEIGRVRLLRRDEEVSEAQKVQRYMKLLRLRNNKSAISEDKVMERFVHLIEI 118
Query: 250 -EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL----------------------C 286
+ L+ + G P+ +WA AAG+D +L+ ++ G L
Sbjct: 119 HDRLASQLGHRPSLERWATAAGIDVSQLKPSMSAGKLRWAELAELTSKELEQVQAEGLQA 178
Query: 287 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI 346
K+ MI +N+RLV+S+AK YQ G+ L DL+QEG GL R EKFD +KG++FSTYA+WWI
Sbjct: 179 KEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWWI 238
Query: 347 KQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLH 406
+Q + ++++ QSRTIRLP H+ E ++K+A++++ E GR +++A ++ ++
Sbjct: 239 RQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQERGRTATIDDIAVELEMTAAQVR 298
Query: 407 AVLLSPKAPRSLDQKIGINQ 426
VLL + PRS+ +I + +
Sbjct: 299 EVLL--RVPRSVSLEIKVGK 316
>gi|206889536|ref|YP_002248786.1| RNA polymerase sigma factor RpoD [Thermodesulfovibrio yellowstonii
DSM 11347]
gi|206741474|gb|ACI20531.1| RNA polymerase sigma factor RpoD [Thermodesulfovibrio yellowstonii
DSM 11347]
Length = 479
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 66/138 (47%), Positives = 98/138 (71%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+++IT N+RLV++IAKNY G G+ L DL++EG GL++ +KF KGFKFSTYA WW
Sbjct: 236 TKNELITRNLRLVVNIAKNYVGRGLPLLDLIEEGNIGLMKAVDKFKYEKGFKFSTYATWW 295
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++L DQ++TIR+P HM+E RV +A ++L + GR PNNEE+AE G+ ++++
Sbjct: 296 IRQAITRALIDQTKTIRVPVHMMEFYNRVTKASRELTQQLGREPNNEEIAEKLGVPVRKV 355
Query: 406 HAVLLSPKAPRSLDQKIG 423
V + + P L IG
Sbjct: 356 EEVFRAIQDPIGLQTPIG 373
>gi|375094942|ref|ZP_09741207.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
marina XMU15]
gi|374655675|gb|EHR50508.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
marina XMU15]
Length = 346
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 128/230 (55%), Gaps = 24/230 (10%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+D +R + LLTA EE+ L+ I+ + FAQ
Sbjct: 47 ADLVRVYLNGIGKTALLTAEEEVDLAKRIE------------------AGVFAQHVLDTA 88
Query: 271 VD---QR--ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 325
D QR EL + G K+ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R
Sbjct: 89 EDLPRQRRVELTALVRDGQRAKNHLLQANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIR 148
Query: 326 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSEN 385
EKFD SKGFKFSTYA WWI+QA+ + ++DQ RTIRLP H+VE ++ ++ L+ +
Sbjct: 149 AVEKFDYSKGFKFSTYATWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQQL 208
Query: 386 GRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
GR +EE+A G++ +++ ++L + P SLD +G ++ P FI
Sbjct: 209 GREATHEELAAEAGIAEEKVASLLDHARDPVSLDMPVGSEED-APLGDFI 257
>gi|452821128|gb|EME28162.1| RNA polymerase primary sigma factor [Galdieria sulphuraria]
Length = 670
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 120/206 (58%)
Query: 227 LTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILC 286
L+ EE + I L +LE +RE L + G P +WA A + ELR +L G
Sbjct: 356 LSLVEEKVICEEIARLTRLEAVREDLRRKMGRLPRENEWAWEANLSVSELRGKLIKGRRA 415
Query: 287 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI 346
K++M+ +N+RLVI AK Y+ G+ QDLVQEG GL+RG EK+DA +GF+FSTYA WWI
Sbjct: 416 KNRMVAANLRLVICFAKRYRNRGVAFQDLVQEGSIGLIRGVEKYDAHRGFRFSTYASWWI 475
Query: 347 KQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLH 406
+Q + K+L + SR RLP H+ E +++ +L + GR P E+A G+ +++
Sbjct: 476 RQGIHKALLECSRMFRLPVHVNEMIKDIRKCSLELMTSLGREPTKLEIAMKVGMPEEKVI 535
Query: 407 AVLLSPKAPRSLDQKIGINQNLKPSV 432
+L ++ SL+ IG + + ++
Sbjct: 536 FLLQRTQSALSLEMPIGHDMECRTTL 561
>gi|255325126|ref|ZP_05366232.1| RNA polymerase major sigma subunit [Corynebacterium
tuberculostearicum SK141]
gi|311739588|ref|ZP_07713423.1| RNA polymerase sigma factor rpoD [Corynebacterium pseudogenitalium
ATCC 33035]
gi|255297691|gb|EET77002.1| RNA polymerase major sigma subunit [Corynebacterium
tuberculostearicum SK141]
gi|311305404|gb|EFQ81472.1| RNA polymerase sigma factor rpoD [Corynebacterium pseudogenitalium
ATCC 33035]
Length = 490
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 130/226 (57%), Gaps = 5/226 (2%)
Query: 199 RRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQ-DLLKLEGLREVLSERCG 257
R+ R Q +D +R LL A +E+ L+ I+ L + E+ R
Sbjct: 169 RQARKDAQLTASADSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYAQHRMDEMEKARAE 228
Query: 258 GSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G A + +++R+LR G K+ ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 229 GDKA----AKLSPMEKRDLRSIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 284
Query: 318 EGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEA 377
EG GL+R EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++
Sbjct: 285 EGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRI 344
Query: 378 RKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
+++L + GR P +E+A+ ++ +++ + + P SLDQ IG
Sbjct: 345 QRELLQDLGREPTPQELAKEMDITEEKVLEIQQYAREPISLDQTIG 390
>gi|319949012|ref|ZP_08023109.1| RNA polymerase sigma factor [Dietzia cinnamea P4]
gi|319437300|gb|EFV92323.1| RNA polymerase sigma factor [Dietzia cinnamea P4]
Length = 460
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 122/198 (61%), Gaps = 9/198 (4%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L ++ER G T AQ +R+ + G+
Sbjct: 172 LLNAEEEVELAKRIEAGLYATWYMAQVTER-GEKLTTAQ--------RRDFKWIERDGVR 222
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 223 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 282
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 283 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 342
Query: 406 HAVLLSPKAPRSLDQKIG 423
+ + P SLDQ IG
Sbjct: 343 LEIQQYAREPISLDQTIG 360
>gi|407647061|ref|YP_006810820.1| RNA polymerase sigma factor [Nocardia brasiliensis ATCC 700358]
gi|407309945|gb|AFU03846.1| RNA polymerase sigma factor [Nocardia brasiliensis ATCC 700358]
Length = 457
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 139/249 (55%), Gaps = 20/249 (8%)
Query: 181 AAEKAAAN-VMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGI 239
AA+KA+ + V + R+ R + +D +R LL A EE++L+ I
Sbjct: 123 AADKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRI 182
Query: 240 Q-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKDKMITSN 294
+ L E +RE +E+ P +RR N+ G K+ ++ +N
Sbjct: 183 EAGLYAAEKVRE-FTEQGEKLPVA-------------MRRDYNWIVRDGNRAKNHLLEAN 228
Query: 295 IRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSL 354
+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA+ +++
Sbjct: 229 LRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAM 288
Query: 355 SDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKA 414
+DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++ + +
Sbjct: 289 ADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYARE 348
Query: 415 PRSLDQKIG 423
P SLDQ IG
Sbjct: 349 PISLDQTIG 357
>gi|387876811|ref|YP_006307115.1| RNA polymerase sigma factor [Mycobacterium sp. MOTT36Y]
gi|443306603|ref|ZP_21036391.1| RNA polymerase sigma factor [Mycobacterium sp. H4Y]
gi|386790269|gb|AFJ36388.1| RNA polymerase sigma factor [Mycobacterium sp. MOTT36Y]
gi|442768167|gb|ELR86161.1| RNA polymerase sigma factor [Mycobacterium sp. H4Y]
Length = 501
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 120/198 (60%), Gaps = 9/198 (4%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L ++ER P +R+++ G
Sbjct: 213 LLNAEEEVELAKRIEAGLYATQLMTEMTERGDKLPA---------AQRRDMQWICRDGDR 263
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 264 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 323
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 324 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 383
Query: 406 HAVLLSPKAPRSLDQKIG 423
+ + P SLDQ IG
Sbjct: 384 LEIQQYAREPISLDQTIG 401
>gi|172040581|ref|YP_001800295.1| RNA polymerase sigma factor [Corynebacterium urealyticum DSM 7109]
gi|171851885|emb|CAQ04861.1| RNA polymerase sigma factor A [Corynebacterium urealyticum DSM
7109]
Length = 545
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 103/153 (67%)
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
+++R+LR G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 293 MNRRDLREIDRDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 352
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D SKG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P
Sbjct: 353 DYSKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPT 412
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
EE+A +++ ++ + + P SLDQ IG
Sbjct: 413 PEELAREMDITVDKVLEIQQYAREPISLDQTIG 445
>gi|159039487|ref|YP_001538740.1| RpoD family RNA polymerase sigma factor [Salinispora arenicola
CNS-205]
gi|157918322|gb|ABV99749.1| RNA polymerase, sigma 70 subunit, RpoD family [Salinispora
arenicola CNS-205]
Length = 329
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 105/155 (67%)
Query: 269 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 328
AGV++ EL+R + G KD I +N+RLV+SIA+ Y +GM + DL+QEG GLVR E
Sbjct: 77 AGVERAELQRLVAEGERAKDLFIRANLRLVVSIARRYVRSGMPMLDLIQEGNTGLVRAVE 136
Query: 329 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH 388
KFD +GFKFSTYA WWI+QA+ ++++ Q RT+RLP H+VE R++ +QL E G
Sbjct: 137 KFDYERGFKFSTYATWWIRQAISRAIAQQERTVRLPVHLVEDVNRMRNVARQLTRELGSD 196
Query: 389 PNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
P E++A A G+S++R++ ++ + SLD +G
Sbjct: 197 PEPEQIATALGVSVERVNELVRWSQDTVSLDTPVG 231
>gi|433603618|ref|YP_007035987.1| RNA polymerase sigma factor rpoD [Saccharothrix espanaensis DSM
44229]
gi|407881471|emb|CCH29114.1| RNA polymerase sigma factor rpoD [Saccharothrix espanaensis DSM
44229]
Length = 435
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 121/199 (60%), Gaps = 11/199 (5%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 284
LL A EE++L+ I+ L E +R E +P +R+LR + G
Sbjct: 147 LLNAEEEVELAKRIEAGLYAAERVRRAEEESEKLTPQL----------RRDLRWIVRDGE 196
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA W
Sbjct: 197 RAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATW 256
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ ++
Sbjct: 257 WIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEK 316
Query: 405 LHAVLLSPKAPRSLDQKIG 423
+ + + P SLDQ IG
Sbjct: 317 VLEIQQYAREPISLDQTIG 335
>gi|254821650|ref|ZP_05226651.1| RNA polymerase sigma factor [Mycobacterium intracellulare ATCC
13950]
gi|379748146|ref|YP_005338967.1| RNA polymerase sigma factor [Mycobacterium intracellulare ATCC
13950]
gi|379755437|ref|YP_005344109.1| RNA polymerase sigma factor [Mycobacterium intracellulare MOTT-02]
gi|379762983|ref|YP_005349380.1| RNA polymerase sigma factor [Mycobacterium intracellulare MOTT-64]
gi|406031675|ref|YP_006730566.1| RNA polymerase sigma factor rpoD [Mycobacterium indicus pranii MTCC
9506]
gi|378800510|gb|AFC44646.1| RNA polymerase sigma factor [Mycobacterium intracellulare ATCC
13950]
gi|378805653|gb|AFC49788.1| RNA polymerase sigma factor [Mycobacterium intracellulare MOTT-02]
gi|378810925|gb|AFC55059.1| RNA polymerase sigma factor [Mycobacterium intracellulare MOTT-64]
gi|405130222|gb|AFS15477.1| RNA polymerase sigma factor rpoD [Mycobacterium indicus pranii MTCC
9506]
Length = 488
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 120/198 (60%), Gaps = 9/198 (4%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L ++ER P +R+++ G
Sbjct: 200 LLNAEEEVELAKRIEAGLYATQLMTEMTERGDKLP---------AAQRRDMQWICRDGDR 250
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 251 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 310
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 311 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 370
Query: 406 HAVLLSPKAPRSLDQKIG 423
+ + P SLDQ IG
Sbjct: 371 LEIQQYAREPISLDQTIG 388
>gi|145596092|ref|YP_001160389.1| RpoD family RNA polymerase sigma factor [Salinispora tropica
CNB-440]
gi|145305429|gb|ABP56011.1| RNA polymerase, sigma 70 subunit, RpoD family [Salinispora tropica
CNB-440]
Length = 332
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 105/155 (67%)
Query: 269 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 328
AGV++ EL+R + G KD I +N+RLV+SIA+ Y +GM + DL+QEG GLVR E
Sbjct: 79 AGVEKAELQRLVAEGARAKDLFIRANLRLVVSIARRYVRSGMPMLDLIQEGNTGLVRAVE 138
Query: 329 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH 388
KFD +GFKFSTYA WWI+QA+ ++++ Q RT+RLP H+VE R++ +QL E G
Sbjct: 139 KFDYERGFKFSTYATWWIRQAISRAIAQQERTVRLPVHLVEDVNRMRNVARQLTRELGSD 198
Query: 389 PNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
P E++A A G++++R++ ++ + SLD +G
Sbjct: 199 PEPEQIATALGVTVERVNELVRWSQDTVSLDTPVG 233
>gi|315444860|ref|YP_004077739.1| sigma-70 family RNA polymerase sigma factor [Mycobacterium gilvum
Spyr1]
gi|315263163|gb|ADT99904.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium gilvum
Spyr1]
Length = 319
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 109/163 (66%), Gaps = 1/163 (0%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+L + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 69 KRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 128
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++++ GR +E
Sbjct: 129 AKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDE 188
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
E+AE +G+ +++++ +L + P SLD +G ++ P FI
Sbjct: 189 ELAEESGIPVEKINDLLEHSRDPVSLDMPVGSDEE-APLGDFI 230
>gi|16330349|ref|NP_441077.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|383322090|ref|YP_005382943.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383325259|ref|YP_005386112.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491143|ref|YP_005408819.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384436410|ref|YP_005651134.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451814507|ref|YP_007450959.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|1652838|dbj|BAA17757.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339273442|dbj|BAK49929.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359271409|dbj|BAL28928.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359274579|dbj|BAL32097.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277749|dbj|BAL35266.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407958268|dbj|BAM51508.1| RNA polymerase sigma factor [Bacillus subtilis BEST7613]
gi|451780476|gb|AGF51445.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 369
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 76/177 (42%), Positives = 116/177 (65%), Gaps = 1/177 (0%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ-RELRRRLNYGI 284
LL+A EE++L+ I+ L+ E +R+ L+++ +P+ +W A Q R+ L
Sbjct: 71 LLSAAEEVELARQIRLLVSAEDVRQQLTQQLERTPSLQEWGQALEFPQVRQFEIWLYQLR 130
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K +MI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD KG+KFSTYA+W
Sbjct: 131 AAKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPDKGYKFSTYAYW 190
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLS 401
WI+QA+ +++++ +RTIRLP H+VE ++K+A++ L E R+PN E+A A ++
Sbjct: 191 WIRQAITRTIANDARTIRLPIHVVEKLNKIKKAQRSLKQELKRNPNEGELAAALDIT 247
>gi|374324890|ref|YP_005078019.1| RNA polymerase sigma factor rpod [Paenibacillus terrae HPL-003]
gi|357203899|gb|AET61796.1| RNA polymerase sigma factor rpod [Paenibacillus terrae HPL-003]
Length = 377
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 72/153 (47%), Positives = 102/153 (66%), Gaps = 1/153 (0%)
Query: 272 DQRELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
D+ EL +R+N G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKF
Sbjct: 125 DEVELAKRINNGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKF 184
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P
Sbjct: 185 DYEKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPT 244
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
EEVA LS++++ ++ + P SL+ IG
Sbjct: 245 PEEVAAEMELSVEKVREIMKIAQEPVSLETPIG 277
>gi|404446700|ref|ZP_11011803.1| RNA polymerase sigma factor SigB [Mycobacterium vaccae ATCC 25954]
gi|403650063|gb|EJZ05350.1| RNA polymerase sigma factor SigB [Mycobacterium vaccae ATCC 25954]
Length = 319
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 104/153 (67%), Gaps = 1/153 (0%)
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 342
G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD +KGFKFSTYA
Sbjct: 79 GEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYA 138
Query: 343 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSM 402
WWI+QA+ + ++DQSRTIRLP H+VE ++ +++++ GR +EE+AE +G+ +
Sbjct: 139 TWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAEESGIPV 198
Query: 403 KRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
++++ +L + P SLD +G ++ P FI
Sbjct: 199 EKINDLLEHSRDPVSLDMPVGSDEE-APLGDFI 230
>gi|408677973|ref|YP_006877800.1| RNA polymerase principal sigma factor HrdA [Streptomyces venezuelae
ATCC 10712]
gi|328882302|emb|CCA55541.1| RNA polymerase principal sigma factor HrdA [Streptomyces venezuelae
ATCC 10712]
Length = 336
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 89/231 (38%), Positives = 133/231 (57%), Gaps = 16/231 (6%)
Query: 200 RKRPSVQEVDYSDPL--RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG 257
R+RP + S L +YLR LLTA EE+ L+ ++ L E E+
Sbjct: 25 RRRPDLGGNGPSSDLFRQYLREIGRIP-LLTAEEEVDLARRVEAGLFAE-------EKLA 76
Query: 258 GSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+P A+ +L R + G + K K+I +N+RLV+S+AK Y G G+ + DLVQ
Sbjct: 77 NTPDLDSRLAS------DLDRLVVLGRIAKRKLIEANLRLVVSVAKRYVGRGLTMLDLVQ 130
Query: 318 EGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEA 377
EG GL+R EKFD ++G+KFSTYA WWI+QA+ ++L+DQ+RTIR+P H+VE RV
Sbjct: 131 EGNLGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVIRV 190
Query: 378 RKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNL 428
++++ E G P EEVA L+ +R+ VL + P SL +G +++
Sbjct: 191 QRRMLQERGYEPTAEEVAAQLDLAPERVGEVLRLAQEPVSLHAPVGEEEDV 241
>gi|172036788|ref|YP_001803289.1| group 2 sigma-70 RNA polymerase sigma factor C [Cyanothece sp. ATCC
51142]
gi|354554599|ref|ZP_08973903.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171698242|gb|ACB51223.1| group 2 sigma-70 RNA polymerase sigma factor C [Cyanothece sp. ATCC
51142]
gi|353553408|gb|EHC22800.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 420
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 109/177 (61%), Gaps = 2/177 (1%)
Query: 264 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 323
QWA A +D +EL GI KD+MI +N+RLV+S+AK YQ G+ L DL+QEG GL
Sbjct: 159 QWATLANIDIQELEEIQKSGIRSKDEMIKANLRLVVSVAKKYQHRGLELLDLIQEGTLGL 218
Query: 324 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYS 383
+ EKFD KG++FSTYA+WWI+Q + ++++ QSR IRLP H+ E ++K+ ++Q+
Sbjct: 219 EKAVEKFDPIKGYRFSTYAYWWIRQGITRAIATQSRIIRLPVHVTEKLNKIKQVQRQISQ 278
Query: 384 ENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFILNLAD 440
GR+ EE+ + ++ ++ V + K PRS+ +I + + + +L D
Sbjct: 279 AKGRNATLEEIGKELNMTPTQVREVFM--KIPRSVSLEIKVGKEKDTELVDLLESED 333
>gi|126660028|ref|ZP_01731150.1| RNA polymerase sigma-C factor [Cyanothece sp. CCY0110]
gi|126618706|gb|EAZ89453.1| RNA polymerase sigma-C factor [Cyanothece sp. CCY0110]
Length = 418
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 109/177 (61%), Gaps = 2/177 (1%)
Query: 264 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 323
QWA A +D +EL GI KD+MI +N+RLV+S+AK YQ G+ L DL+QEG GL
Sbjct: 157 QWATEANIDVKELDEIQKSGIRAKDEMIKANLRLVVSVAKKYQHRGLELLDLIQEGTLGL 216
Query: 324 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYS 383
+ EKFD KG++FSTYA+WWI+Q + ++++ QSR IRLP H+ E ++K+ ++++
Sbjct: 217 EKAVEKFDPIKGYRFSTYAYWWIRQGITRAIATQSRIIRLPVHITEKLNKIKQVQRKISQ 276
Query: 384 ENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFILNLAD 440
GR EE+ + +S ++ VL+ K PRS+ +I + + + +L D
Sbjct: 277 AKGRSATLEEIGKELNMSSTQVRDVLM--KIPRSVSLEIKVGKEKDTELVDLLESED 331
>gi|453051815|gb|EME99312.1| RNA polymerase sigma factor [Streptomyces mobaraensis NBRC 13819 =
DSM 40847]
Length = 379
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 118/198 (59%), Gaps = 13/198 (6%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE++L+ ++ L E E+ P A +L R + G +
Sbjct: 95 LLTAAEEVELARRVEAGLFAE-------EKLSNDPDLDTCLAL------DLDRLVVLGRM 141
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G+KFSTYA WW
Sbjct: 142 AKRRLIEANLRLVVSVAKRYIGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWW 201
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++L+DQ+RTIR+P H+VE RV ++++ E G P EEVA LS +R+
Sbjct: 202 IRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGSEPTAEEVAAYLDLSEERV 261
Query: 406 HAVLLSPKAPRSLDQKIG 423
VL + P SL +G
Sbjct: 262 SEVLRLAQEPVSLHAPVG 279
>gi|145224520|ref|YP_001135198.1| RNA polymerase sigma factor [Mycobacterium gilvum PYR-GCK]
gi|315444851|ref|YP_004077730.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Mycobacterium gilvum
Spyr1]
gi|145217006|gb|ABP46410.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium gilvum
PYR-GCK]
gi|315263154|gb|ADT99895.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Mycobacterium gilvum
Spyr1]
Length = 488
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 121/204 (59%), Gaps = 21/204 (10%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L +E+ G T AQ R +Y +
Sbjct: 200 LLNAEEEVELAKRIEAGLYCTQLMAEFAEK-GEKLTTAQ--------------RRDYMWI 244
Query: 286 CKD------KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFS 339
C+D ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFS
Sbjct: 245 CRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFS 304
Query: 340 TYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATG 399
TYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+
Sbjct: 305 TYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMD 364
Query: 400 LSMKRLHAVLLSPKAPRSLDQKIG 423
++ +++ + + P SLDQ IG
Sbjct: 365 ITPEKVLEIQQYAREPISLDQTIG 388
>gi|383819214|ref|ZP_09974490.1| RNA polymerase sigma factor [Mycobacterium phlei RIVM601174]
gi|383337185|gb|EID15566.1| RNA polymerase sigma factor [Mycobacterium phlei RIVM601174]
Length = 472
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 124/203 (61%), Gaps = 19/203 (9%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 282
LL A EE++L+ I+ L + L E ++E+ PT +LRR + +
Sbjct: 184 LLNAEEEVELAKRIEAGLYATQKLAE-MTEKGEKIPT-------------QLRRDMQWIC 229
Query: 283 --GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 340
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFST
Sbjct: 230 RDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 289
Query: 341 YAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGL 400
YA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ +
Sbjct: 290 YATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDI 349
Query: 401 SMKRLHAVLLSPKAPRSLDQKIG 423
+ +++ + + P SLDQ IG
Sbjct: 350 TPEKVLEIQQYAREPISLDQTIG 372
>gi|403380483|ref|ZP_10922540.1| RpoD subfamily RNA polymerase sigma-70 subunit [Paenibacillus sp.
JC66]
Length = 376
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 65/138 (47%), Positives = 94/138 (68%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIA+ Y G GM L DL+QEG GL++ EKFD +KGFKFSTYA WW
Sbjct: 139 AKKRLAEANLRLVVSIARRYAGRGMLLLDLIQEGNMGLIKAVEKFDYTKGFKFSTYATWW 198
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +S++DQ+RTIR+P HMVE + +QL E GR P EE+A+ LS+ ++
Sbjct: 199 IRQAITRSIADQARTIRIPVHMVETMNKFTRVSRQLLQEMGREPTPEEIAKEMELSLDKV 258
Query: 406 HAVLLSPKAPRSLDQKIG 423
++ + P SL+ +G
Sbjct: 259 REIMKISQEPVSLETPVG 276
>gi|239987439|ref|ZP_04708103.1| putative RNA polymerase principal sigma factor [Streptomyces
roseosporus NRRL 11379]
Length = 363
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 119/198 (60%), Gaps = 13/198 (6%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE++L+ ++ L E ER G+P A +L R + G
Sbjct: 79 LLTAAEEVELARRVEAGLFAE-------ERLTGTPDLDSRLAG------DLDRLVVMGRT 125
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G+KFSTYA WW
Sbjct: 126 AKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWW 185
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++L+DQ+RTIR+P H+VE RV +++L E G P E++A L+ +R+
Sbjct: 186 IRQAMSRALADQARTIRVPVHVVELINRVVRVQRRLLQERGVEPTAEDIAVELDLTPERV 245
Query: 406 HAVLLSPKAPRSLDQKIG 423
VL + P SL +G
Sbjct: 246 TEVLRLAQEPVSLHAPVG 263
>gi|385682368|ref|ZP_10056296.1| RNA polymerase sigma factor [Amycolatopsis sp. ATCC 39116]
Length = 447
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 103/151 (68%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+LR + G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD
Sbjct: 197 RRDLRWIIRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDY 256
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P E
Sbjct: 257 TKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPE 316
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
E+A+ +S +++ + + P SLDQ IG
Sbjct: 317 ELAKEMDISPEKVLEIQQYAREPISLDQTIG 347
>gi|320530863|ref|ZP_08031900.1| RNA polymerase sigma factor RpoD [Selenomonas artemidis F0399]
gi|402302656|ref|ZP_10821765.1| RNA polymerase sigma factor RpoD [Selenomonas sp. FOBRC9]
gi|320136897|gb|EFW28842.1| RNA polymerase sigma factor RpoD [Selenomonas artemidis F0399]
gi|400380232|gb|EJP33053.1| RNA polymerase sigma factor RpoD [Selenomonas sp. FOBRC9]
Length = 370
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 66/142 (46%), Positives = 98/142 (69%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
+ ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD SKG+KFSTYA WW
Sbjct: 133 ARHRLEEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYSKGYKFSTYATWW 192
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE+A+ G+S+ R+
Sbjct: 193 IRQAITRAIADQARTIRIPVHMVETINKLVRISRQLLQELGRDPRPEEIAKEMGISVARV 252
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
H ++ + P SL+ IG ++
Sbjct: 253 HEIMKIAQEPVSLETPIGEEED 274
>gi|313897089|ref|ZP_07830636.1| RNA polymerase sigma factor RpoD [Selenomonas sp. oral taxon 137
str. F0430]
gi|312974536|gb|EFR40004.1| RNA polymerase sigma factor RpoD [Selenomonas sp. oral taxon 137
str. F0430]
Length = 370
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 66/142 (46%), Positives = 98/142 (69%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
+ ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD SKG+KFSTYA WW
Sbjct: 133 ARHRLEEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYSKGYKFSTYATWW 192
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE+A+ G+S+ R+
Sbjct: 193 IRQAITRAIADQARTIRIPVHMVETINKLVRISRQLLQELGRDPRPEEIAKEMGISVARV 252
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
H ++ + P SL+ IG ++
Sbjct: 253 HEIMKIAQEPVSLETPIGEEED 274
>gi|182438860|ref|YP_001826579.1| RNA polymerase principal sigma factor [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326779516|ref|ZP_08238781.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces
griseus XylebKG-1]
gi|178467376|dbj|BAG21896.1| putative RNA polymerase principal sigma factor [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|326659849|gb|EGE44695.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces
griseus XylebKG-1]
Length = 363
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 119/198 (60%), Gaps = 13/198 (6%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE++L+ ++ L E ER G+P A +L R + G
Sbjct: 79 LLTAAEEVELARRVEAGLFAE-------ERLAGTPDLDSRLAG------DLDRLVVMGRT 125
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G+KFSTYA WW
Sbjct: 126 AKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWW 185
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++L+DQ+RTIR+P H+VE RV +++L E G P E++A L+ +R+
Sbjct: 186 IRQAMSRALADQARTIRVPVHVVELINRVVRVQRRLLQERGVEPTAEDIAVDLDLTPERV 245
Query: 406 HAVLLSPKAPRSLDQKIG 423
+L + P SL +G
Sbjct: 246 TDILRLAQEPVSLHAPVG 263
>gi|116071891|ref|ZP_01469159.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. BL107]
gi|116065514|gb|EAU71272.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. BL107]
Length = 355
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 108/168 (64%), Gaps = 4/168 (2%)
Query: 262 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCR 321
+ WA A ++ +EL+ L G KD MI +N+RLV+++AK YQ GM + DLVQEG
Sbjct: 91 YVAWAEQAAIEAKELKLSLRNGRRAKDHMIQANLRLVVAVAKKYQQRGMEILDLVQEGTL 150
Query: 322 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL 381
GL R EKFD ++GF+FSTYA+WWI+Q + ++++ QSRTIRLP H+ E R+K ++++
Sbjct: 151 GLERAVEKFDPTRGFRFSTYAYWWIRQGMTRAIATQSRTIRLPVHVTEKLNRIKRVQQEI 210
Query: 382 YSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR--SLDQKIGINQN 427
S GR + ++A G+S + L + PR SLD ++G +Q+
Sbjct: 211 ASNEGRIASIADLARELGISEDTVRQTL--ERVPRSVSLDSRVGKDQD 256
>gi|357436347|ref|XP_003588449.1| RNA polymerase sigma-B factor [Medicago truncatula]
gi|355477497|gb|AES58700.1| RNA polymerase sigma-B factor [Medicago truncatula]
Length = 549
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 134/201 (66%), Gaps = 7/201 (3%)
Query: 212 DPLR-----YLR--ATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQ 264
DPLR +++ + T + R + A E+++S G++ L +LE +R + E + +
Sbjct: 235 DPLRSSPASFVKRASNTKNKRAVIAQREVEMSKGVKVLAELEKIRTAIEEDTKQVVSLSS 294
Query: 265 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV 324
WA +GVD++ L+++L +G C+D++I S LV+ A+ Y+G G+ L+DL+Q G G++
Sbjct: 295 WAETSGVDEKVLQQQLYHGYYCRDELIRSTRSLVLYFARKYRGMGIALEDLLQVGYIGVL 354
Query: 325 RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSE 384
+GAE+FD++KG++FSTY +WI++++ + ++ +R I +P+ M +A ++++ARK L +
Sbjct: 355 QGAERFDSTKGYRFSTYVQYWIRKSMSRMVAKYARGITVPWSMNKAISQIQKARKVLKNT 414
Query: 385 NGRHPNNEEVAEATGLSMKRL 405
++PN+ E+A+ TGLS+ ++
Sbjct: 415 TMKYPNDLEIAKMTGLSLDKI 435
>gi|308069922|ref|YP_003871527.1| RNA polymerase sigma factor rpoD (Sigma-A) [Paenibacillus polymyxa
E681]
gi|310643031|ref|YP_003947789.1| RNA polymerase sigma factor rpod [Paenibacillus polymyxa SC2]
gi|375309436|ref|ZP_09774717.1| RNA polymerase sigma factor rpoD (Sigma-A) [Paenibacillus sp.
Aloe-11]
gi|305859201|gb|ADM70989.1| RNA polymerase sigma factor rpoD (Sigma-A) [Paenibacillus polymyxa
E681]
gi|309247981|gb|ADO57548.1| RNA polymerase sigma factor rpoD [Paenibacillus polymyxa SC2]
gi|375078745|gb|EHS56972.1| RNA polymerase sigma factor rpoD (Sigma-A) [Paenibacillus sp.
Aloe-11]
gi|392303839|emb|CCI70202.1| RNA polymerase sigma factor rpoD [Paenibacillus polymyxa M1]
Length = 377
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 72/153 (47%), Positives = 102/153 (66%), Gaps = 1/153 (0%)
Query: 272 DQRELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
D+ EL +R+N G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKF
Sbjct: 125 DEVELAKRINNGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKF 184
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P
Sbjct: 185 DYEKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPT 244
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
EEVA LS++++ ++ + P SL+ IG
Sbjct: 245 PEEVAAEMELSVEKVREIMKIAQEPVSLETPIG 277
>gi|262202171|ref|YP_003273379.1| sigma-70 family RNA polymerase sigma factor [Gordonia bronchialis
DSM 43247]
gi|262085518|gb|ACY21486.1| RNA polymerase sigma factor, sigma-70 family [Gordonia bronchialis
DSM 43247]
Length = 337
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 89/244 (36%), Positives = 141/244 (57%), Gaps = 24/244 (9%)
Query: 200 RKRPSVQEVDY------SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGL--REV 251
R RP++ E D +D +R + LL A +E++L+ I+ GL + V
Sbjct: 21 RTRPAMTEQDLDAQSPAADLVRVYLNGIGRTALLNAEQEVELAKQIE-----AGLYAKHV 75
Query: 252 LSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMN 311
L+ T + +AA +R+L + G + ++ +N+RLV+S+AK Y G GM
Sbjct: 76 LA-------TKKRLSAAK---KRDLAIVVREGEAARAHLLEANLRLVVSLAKRYTGRGMP 125
Query: 312 LQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEAT 371
L DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE
Sbjct: 126 LLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQV 185
Query: 372 YRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPS 431
++ +++L+ + GR +EE+A +G+ +++ +L + P SLD +G ++ P
Sbjct: 186 NKLARIKRELHQQLGREATDEELANESGIPAEKIADLLDHSRDPVSLDMPVGSDEE-APL 244
Query: 432 VCFI 435
FI
Sbjct: 245 GDFI 248
>gi|375092093|ref|ZP_09738378.1| RNA polymerase sigma factor rpoD [Helcococcus kunzii ATCC 51366]
gi|374561859|gb|EHR33196.1| RNA polymerase sigma factor rpoD [Helcococcus kunzii ATCC 51366]
Length = 675
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 103/160 (64%)
Query: 264 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 323
Q + D + L+++ G K K+ +N+RLV+SIAK Y G GM+ DL+QEG GL
Sbjct: 414 QRSGLEDEDIKYLKKKYRIGKAAKGKLAETNLRLVVSIAKRYVGRGMSFLDLIQEGNLGL 473
Query: 324 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYS 383
++ EKFD +GFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL
Sbjct: 474 MKAVEKFDYKRGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLVQ 533
Query: 384 ENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
E GR P NEE+A+ + + ++ V + P SL+ IG
Sbjct: 534 ELGRTPTNEEIAKEMNIDVDKVREVRKIAQEPVSLEAPIG 573
>gi|409358547|ref|ZP_11236910.1| RNA polymerase sigma factor [Dietzia alimentaria 72]
Length = 462
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 121/198 (61%), Gaps = 9/198 (4%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L + ER G T AQ +R+ R G+
Sbjct: 174 LLNAEEEVELAKRIEAGLYSTWHMAQVVER-GDKLTTAQ--------RRDFRWIERDGVR 224
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 225 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 284
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 285 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 344
Query: 406 HAVLLSPKAPRSLDQKIG 423
+ + P SLDQ IG
Sbjct: 345 LEIQQYAREPISLDQTIG 362
>gi|359427064|ref|ZP_09218139.1| RNA polymerase sigma factor SigA [Gordonia amarae NBRC 15530]
gi|358237677|dbj|GAB07721.1| RNA polymerase sigma factor SigA [Gordonia amarae NBRC 15530]
Length = 491
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 92/253 (36%), Positives = 140/253 (55%), Gaps = 39/253 (15%)
Query: 194 SGSTSRRKRPSVQEVDYSDPLRYLR------ATTSSSR----------LLTANEEMQLSA 237
SGS S + V + D S+ LR R A+ S R LL A EE++L+
Sbjct: 155 SGSDSAKSGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 214
Query: 238 GIQ-DLLKLEGLREVL--SERCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKDKM 290
I+ L E LR ++ E+ G + +R LN+ G K+ +
Sbjct: 215 RIEAGLYATECLRRIVESGEKLGTAQ----------------KRDLNWVSRDGNRAKNHL 258
Query: 291 ITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAV 350
+ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA+
Sbjct: 259 LEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAI 318
Query: 351 RKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 410
++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++ +
Sbjct: 319 TRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQ 378
Query: 411 SPKAPRSLDQKIG 423
+ P SLDQ IG
Sbjct: 379 YAREPISLDQTIG 391
>gi|384566591|ref|ZP_10013695.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
glauca K62]
gi|384522445|gb|EIE99640.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
glauca K62]
Length = 343
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 100/150 (66%), Gaps = 1/150 (0%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD +KGFKFSTYA WW
Sbjct: 106 AKNHLLQANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYAKGFKFSTYATWW 165
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ + ++DQ RTIRLP H+VE ++ ++ L+ GR NEE+A +G++ ++
Sbjct: 166 IRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQRLGREATNEELAAESGIAEAKV 225
Query: 406 HAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
++L + P SLD +G ++ P FI
Sbjct: 226 ASLLDHARDPVSLDMPVGTEED-APLGDFI 254
>gi|383776221|ref|YP_005460787.1| putative RNA polymerase sigma factor [Actinoplanes missouriensis
431]
gi|381369453|dbj|BAL86271.1| putative RNA polymerase sigma factor [Actinoplanes missouriensis
431]
Length = 333
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 83/202 (41%), Positives = 119/202 (58%), Gaps = 13/202 (6%)
Query: 222 SSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLN 281
S + LL A E++LS I+ L E L E ER GV + EL R +
Sbjct: 47 SRTPLLDAEREVELSRTIEAGLYAEHLLEQGEER-------------RGVSREELERLVT 93
Query: 282 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 341
G KD I +N+RLV+SIA+ Y +GM + DL+QEG GLVR EKFD KGFKFSTY
Sbjct: 94 EGQRAKDLFIRANLRLVVSIARRYVRSGMPMLDLIQEGNTGLVRAVEKFDYEKGFKFSTY 153
Query: 342 AHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLS 401
A WW++QA+ ++++ Q RT+RLP H+VE R++ +QL E G P E++A A G++
Sbjct: 154 ATWWVRQAISRAIAQQERTVRLPVHLVEDVNRMRNVTRQLVRELGGDPEPEQIAAALGVT 213
Query: 402 MKRLHAVLLSPKAPRSLDQKIG 423
++R++ + + SLD +G
Sbjct: 214 VERVNELTRWAQDTVSLDTPVG 235
>gi|40353313|gb|AAR84420.1| essential primary sigma 70 factor [Frankia sp. ACN1ag]
Length = 255
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 66/141 (46%), Positives = 98/141 (69%)
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 342
G + K K++ +N+RLV+SIAK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA
Sbjct: 43 GQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 102
Query: 343 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSM 402
WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+ EE+A+ L+
Sbjct: 103 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPSPEEIAKEMDLTP 162
Query: 403 KRLHAVLLSPKAPRSLDQKIG 423
++ +L + P SL+ IG
Sbjct: 163 DKVREILKVSQEPVSLETPIG 183
>gi|423348933|ref|ZP_17326589.1| RNA polymerase principal sigma factor hrdB [Scardovia wiggsiae
F0424]
gi|393703162|gb|EJD65363.1| RNA polymerase principal sigma factor hrdB [Scardovia wiggsiae
F0424]
Length = 593
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 121/213 (56%), Gaps = 11/213 (5%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SDP++ LL A +E+ LS I+ L + L L TF +
Sbjct: 290 SDPVKDYLKQIGRVNLLNAEQEVDLSERIEAGLYAQHL---LDTSPAEDLTFQR------ 340
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
+RELR N G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 341 --RRELRWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKF 398
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++Q+ + GR P
Sbjct: 399 DWKKGFKFSTYATWWIRQAITRAMADQARTIRVPVHMVEVINKLSRVQRQMLQDLGREPT 458
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
+E+A + ++++ V + P SL +G
Sbjct: 459 PDELARELDMPVEKVQEVQKYGREPISLHTPLG 491
>gi|171914125|ref|ZP_02929595.1| RNA polymerase sigma factor RpoD [Verrucomicrobium spinosum DSM
4136]
Length = 576
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 66/138 (47%), Positives = 97/138 (70%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K +M+ +N+RLVISIAK Y G++ DL+QEG GL+R EKF+ +G+KFSTYA WW
Sbjct: 336 AKTEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMGLMRAVEKFEYKRGYKFSTYATWW 395
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ +S++DQ+RTIR+P HM++ ++ +KQL E GR P +E+AE L ++R+
Sbjct: 396 IRQAITRSIADQARTIRIPVHMIDTINKLLRVQKQLVQELGRDPTPDEIAEEIHLPVERV 455
Query: 406 HAVLLSPKAPRSLDQKIG 423
+AVL + P SL K+G
Sbjct: 456 NAVLRMSQQPVSLQTKVG 473
>gi|148243538|ref|YP_001228695.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp.
RCC307]
gi|147851848|emb|CAK29342.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. RCC307]
Length = 370
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 81/214 (37%), Positives = 127/214 (59%), Gaps = 29/214 (13%)
Query: 241 DLLKLEGLREVL---SERCGGSPTFAQWAAAAGVDQRELR-------------------- 277
D+ +LE L E + + G P+ +QWA A G+ ELR
Sbjct: 61 DVARLEALEEQRLRETSKLGHQPSQSQWAQACGLSAGELRAQVQAGNKAWAELLDMSPGD 120
Query: 278 --RRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 335
R+L +G K++MI +N+RLV+++AK YQ GM L DLVQEG GL RG EK+D ++G
Sbjct: 121 LQRQLLHGRRAKERMIQANLRLVVAVAKKYQHRGMELLDLVQEGTLGLERGVEKYDPTRG 180
Query: 336 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVA 395
F+FSTYA+WWI+Q + ++++ QSRTIRLP H+ E R+K+A++ + S GR ++++
Sbjct: 181 FRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNRIKKAQRDIASRLGRTATLKDLS 240
Query: 396 EATGLSMKRLHAVLLSPKAPR--SLDQKIGINQN 427
+ LS + + L+ + PR SLD ++G + +
Sbjct: 241 QELQLSEEVVRQTLM--RVPRSVSLDTRVGRDMD 272
>gi|41408918|ref|NP_961754.1| RNA polymerase sigma factor [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41397277|gb|AAS05137.1| SigA [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 509
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 121/198 (61%), Gaps = 9/198 (4%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L ++ER P AQ +R++ G
Sbjct: 221 LLNAEEEVELAKRIEAGLYATQLMSEMAERGEKLPA-AQ--------RRDMMWICRDGDR 271
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 272 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 331
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 332 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDPGREPTPEELAKEMDITPEKV 391
Query: 406 HAVLLSPKAPRSLDQKIG 423
+ + P SLDQ IG
Sbjct: 392 LEIQQYAREPISLDQTIG 409
>gi|40353309|gb|AAR84418.1| essential primary sigma 70 factor [Frankia sp. D11]
gi|40353317|gb|AAR84422.1| essential primary sigma 70 factor [Frankia sp. HR2714]
gi|40353319|gb|AAR84423.1| essential primary sigma 70 factor [Frankia sp. Flec]
Length = 255
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 66/141 (46%), Positives = 98/141 (69%)
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 342
G + K K++ +N+RLV+SIAK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA
Sbjct: 43 GQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 102
Query: 343 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSM 402
WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+ EE+A+ L+
Sbjct: 103 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPSPEEIAKEMDLTP 162
Query: 403 KRLHAVLLSPKAPRSLDQKIG 423
++ +L + P SL+ IG
Sbjct: 163 DKVREILKVSQEPVSLETPIG 183
>gi|407647092|ref|YP_006810851.1| RNA polymerase sigma factor SigB [Nocardia brasiliensis ATCC
700358]
gi|407309976|gb|AFU03877.1| RNA polymerase sigma factor SigB [Nocardia brasiliensis ATCC
700358]
Length = 322
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 135/240 (56%), Gaps = 18/240 (7%)
Query: 200 RKRPSVQEVDYSDP----LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 255
R R S Q++D P +R + LLTA +E++L+ I+ L + L E +R
Sbjct: 8 RVRTSDQDLDAQSPAADLVRVYLNGIGRTALLTAADEVELAKRIEAGLYAQHLLET-GKR 66
Query: 256 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 315
+ +R+L + G + ++ +N+RLV+S+AK Y G GM L DL
Sbjct: 67 LSATR------------KRDLALIVREGQAARSHLLEANLRLVVSLAKRYTGRGMPLLDL 114
Query: 316 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVK 375
+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++
Sbjct: 115 IQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLA 174
Query: 376 EARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
+++L+ + GR + E+A +G+ + ++ +L + P SLD +G N P FI
Sbjct: 175 RIKRELHQQLGREATDAELANESGIPVDKISDLLDHSRDPVSLDMPVG-NDEEAPLGDFI 233
>gi|390453096|ref|ZP_10238624.1| RNA polymerase sigma factor rpod [Paenibacillus peoriae KCTC 3763]
Length = 377
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 72/153 (47%), Positives = 102/153 (66%), Gaps = 1/153 (0%)
Query: 272 DQRELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
D+ EL +R+N G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKF
Sbjct: 125 DEVELAKRINNGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKF 184
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P
Sbjct: 185 DYEKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPT 244
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
EEVA LS++++ ++ + P SL+ IG
Sbjct: 245 PEEVAAEMELSVEKVREIMKIAQEPVSLETPIG 277
>gi|425445125|ref|ZP_18825161.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9443]
gi|389734954|emb|CCI01463.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9443]
Length = 435
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 121/212 (57%), Gaps = 22/212 (10%)
Query: 234 QLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA----------------------GV 271
Q A +Q +KL +R+ L+ R P+ +WA A G+
Sbjct: 122 QGDAQVQQFVKLIAVRDQLTARSAHRPSLERWAKTAQITVSELKNALKAGKQRWAHLAGL 181
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
+ EL + G K++MI +N+RLV+S+AK YQ G+ L DL+QEG GL R EKFD
Sbjct: 182 EVGELEEIIALGTHAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFD 241
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
+KG++FSTYA+WWI+Q + ++++ QSR IRLP H+ E ++K+A++++ GR
Sbjct: 242 PTKGYRFSTYAYWWIRQGMTRAIATQSRMIRLPVHITEKLNKIKKAQRKISQIRGRTATV 301
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
EE+A+ L+ + + VL++ SL+ K+G
Sbjct: 302 EEIAQELALTPEAVREVLMTVPRSVSLEIKVG 333
>gi|218248849|ref|YP_002374220.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8801]
gi|257061911|ref|YP_003139799.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8802]
gi|218169327|gb|ACK68064.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
gi|256592077|gb|ACV02964.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 417
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 120/207 (57%), Gaps = 22/207 (10%)
Query: 239 IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLN----------------- 281
IQ L+++ + + L G P++ +WA AA + EL+ L
Sbjct: 109 IQQLIEMAEIHDRLFISLGYRPSWDRWAKAAQISVGELKTILGQGKERWAQLADIELDQL 168
Query: 282 -----YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF 336
GI K++MI +N+RLV+S+AK YQ G+ L DL+QEG GL R EKFD +KG+
Sbjct: 169 ETIEKVGIRAKEQMIKANLRLVVSVAKKYQHRGLELLDLIQEGTLGLERAVEKFDPTKGY 228
Query: 337 KFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAE 396
+FSTYA+WWI+Q + +++S QSR IRLP H+ E ++K A+++L E GR EE+++
Sbjct: 229 RFSTYAYWWIRQGITRAISTQSRIIRLPVHITEKLNKIKRAQRKLSQEKGRKATIEEMSK 288
Query: 397 ATGLSMKRLHAVLLSPKAPRSLDQKIG 423
+S +++ VLL SL+ K+G
Sbjct: 289 ELDMSAEQIREVLLRIPRSVSLEVKVG 315
>gi|383831200|ref|ZP_09986289.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
xinjiangensis XJ-54]
gi|383463853|gb|EID55943.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
xinjiangensis XJ-54]
Length = 468
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 102/153 (66%), Gaps = 4/153 (2%)
Query: 275 ELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
++RR L + G K ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 216 QMRRDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 275
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P
Sbjct: 276 DYTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPT 335
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
EE+A+ +S +++ + + P SLDQ IG
Sbjct: 336 PEELAKEMDISPEKVLEIQQYAREPISLDQTIG 368
>gi|375101493|ref|ZP_09747756.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
cyanea NA-134]
gi|374662225|gb|EHR62103.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
cyanea NA-134]
Length = 474
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 102/153 (66%), Gaps = 4/153 (2%)
Query: 275 ELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
++RR L + G K ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 222 QMRRDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 281
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P
Sbjct: 282 DYTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPT 341
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
EE+A+ +S +++ + + P SLDQ IG
Sbjct: 342 PEELAKEMDISPEKVLEIQQYAREPISLDQTIG 374
>gi|260893571|ref|YP_003239668.1| RpoD subfamily RNA polymerase sigma-70 subunit [Ammonifex degensii
KC4]
gi|260865712|gb|ACX52818.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Ammonifex
degensii KC4]
Length = 369
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 275 ELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G K ++I +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD
Sbjct: 120 ELAKRMEQGDEEAKRRLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDWR 179
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE
Sbjct: 180 KGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLVQELGREPTPEE 239
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
+AE G+S +++ ++ + P SL+ IG ++
Sbjct: 240 IAEKMGISPEKVREIMKVAQEPVSLETPIGEEED 273
>gi|329934715|ref|ZP_08284756.1| RNA polymerase principal sigma factor HrdA [Streptomyces
griseoaurantiacus M045]
gi|329305537|gb|EGG49393.1| RNA polymerase principal sigma factor HrdA [Streptomyces
griseoaurantiacus M045]
Length = 363
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 81/203 (39%), Positives = 123/203 (60%), Gaps = 13/203 (6%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE++L+ ++ L E E+ G +P A +L + G +
Sbjct: 79 LLTAAEEVELARRVEAGLFAE-------EKLGSTPDLDSRLAL------DLDTLVVRGRM 125
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G+KFSTYA WW
Sbjct: 126 AKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWW 185
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++L+DQ+RTIR+P H+VE RV ++++ E G P+ EEVA LS +R+
Sbjct: 186 IRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPSAEEVAAQLDLSPERV 245
Query: 406 HAVLLSPKAPRSLDQKIGINQNL 428
VL + P SL +G +++
Sbjct: 246 GEVLRLAQEPVSLHAPVGEEEDV 268
>gi|304437691|ref|ZP_07397643.1| DNA-directed RNA polymerase sigma subunit SigA [Selenomonas sp.
oral taxon 149 str. 67H29BP]
gi|304369324|gb|EFM22997.1| DNA-directed RNA polymerase sigma subunit SigA [Selenomonas sp.
oral taxon 149 str. 67H29BP]
Length = 370
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 66/142 (46%), Positives = 98/142 (69%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
+ ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD SKG+KFSTYA WW
Sbjct: 133 ARHRLEEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYSKGYKFSTYATWW 192
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE+A+ G+S+ R+
Sbjct: 193 IRQAITRAIADQARTIRIPVHMVETINKLVRISRQLLQELGRDPRPEEIAKEMGISVARV 252
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
H ++ + P SL+ IG ++
Sbjct: 253 HEIMKIAQEPVSLETPIGEEED 274
>gi|291444398|ref|ZP_06583788.1| RNA polymerase principal sigma factor hrdA [Streptomyces
roseosporus NRRL 15998]
gi|291347345|gb|EFE74249.1| RNA polymerase principal sigma factor hrdA [Streptomyces
roseosporus NRRL 15998]
Length = 395
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 119/198 (60%), Gaps = 13/198 (6%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE++L+ ++ L E ER G+P A +L R + G
Sbjct: 111 LLTAAEEVELARRVEAGLFAE-------ERLTGTPDLDSRLAG------DLDRLVVMGRT 157
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G+KFSTYA WW
Sbjct: 158 AKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWW 217
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++L+DQ+RTIR+P H+VE RV +++L E G P E++A L+ +R+
Sbjct: 218 IRQAMSRALADQARTIRVPVHVVELINRVVRVQRRLLQERGVEPTAEDIAVELDLTPERV 277
Query: 406 HAVLLSPKAPRSLDQKIG 423
VL + P SL +G
Sbjct: 278 TEVLRLAQEPVSLHAPVG 295
>gi|406956443|gb|EKD84538.1| hypothetical protein ACD_38C00204G0004 [uncultured bacterium]
Length = 363
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 64/142 (45%), Positives = 99/142 (69%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
+DK+I++N+RLV+SIAK Y G GM+L DL++EG GL+R +K+D +G+KFSTYA WW
Sbjct: 127 ARDKLISANLRLVVSIAKKYVGRGMSLLDLIEEGNIGLMRAVDKYDWRRGYKFSTYATWW 186
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE R +++L E GR P EEVA+A G+ +
Sbjct: 187 IRQAITRAIADQARTIRIPVHMVETINRFNRTQRKLMQELGREPTPEEVAKALGIDETKA 246
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
++ + P SL+ +G ++
Sbjct: 247 REIIKVSQEPTSLETPVGDEED 268
>gi|2398853|dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
Length = 571
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 127/193 (65%), Gaps = 1/193 (0%)
Query: 232 EMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMI 291
E ++S G++ + +E +R L E G + + WAAAAG++++ L R L+YG C+D+++
Sbjct: 278 ETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELV 337
Query: 292 TSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVR 351
S LV+ +A+NY+G G+ +DL+Q G G+++GAE+FD ++G+KFSTY +WI++++
Sbjct: 338 KSTRSLVLFLARNYRGMGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMS 397
Query: 352 KSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHAVLL 410
+S +R + +P ++ +++ARK L + +G ++ +EE+A+ TG S+K++ A
Sbjct: 398 TMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQ 457
Query: 411 SPKAPRSLDQKIG 423
K S+D+K+G
Sbjct: 458 CLKVVGSIDKKVG 470
>gi|75812337|ref|YP_319956.1| sigma-28 [Anabaena variabilis ATCC 29413]
gi|75705093|gb|ABA24767.1| Sigma-28 [Anabaena variabilis ATCC 29413]
Length = 316
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 128/216 (59%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SD +R LLT+++E+ +Q ++ ++ ++ LS++ PT A+ A
Sbjct: 6 SDLIRIYLQEIGQFPLLTSDQEITYGRQVQQMIAIQEQQQQLSQQLHREPTTAELANFLN 65
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
Q ++ + L G K KMIT+N+RLV+SIAK YQ + DLVQEG GL RG EKF
Sbjct: 66 TTQAQVNQILELGQRAKQKMITANLRLVVSIAKKYQRRNLEFLDLVQEGAIGLQRGIEKF 125
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D ++G+K STYA+WW+ QA+ ++++++SRT+RLP H+ E ++K+ +++ + GR P+
Sbjct: 126 DPNRGYKLSTYAYWWVTQAITRAIAEKSRTVRLPIHVNEKLNQIKKVQREFFQTLGRRPS 185
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQ 426
E+A+ L ++ L SLD K+G NQ
Sbjct: 186 VAEIAQKLELEPSQIREYLKVASGTISLDLKVGDNQ 221
>gi|400536812|ref|ZP_10800346.1| RNA polymerase sigma factor [Mycobacterium colombiense CECT 3035]
gi|400329825|gb|EJO87324.1| RNA polymerase sigma factor [Mycobacterium colombiense CECT 3035]
Length = 505
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 121/198 (61%), Gaps = 9/198 (4%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L L+ER P AQ +R++ G
Sbjct: 217 LLNAEEEVELAKRIEAGLYATQLMTELTERGDKLPA-AQ--------RRDMVWICRDGDR 267
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 268 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 327
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 328 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 387
Query: 406 HAVLLSPKAPRSLDQKIG 423
+ + P SLDQ IG
Sbjct: 388 LEIQQYAREPISLDQTIG 405
>gi|284991968|ref|YP_003410522.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geodermatophilus
obscurus DSM 43160]
gi|284065213|gb|ADB76151.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geodermatophilus
obscurus DSM 43160]
Length = 327
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 85/229 (37%), Positives = 128/229 (55%), Gaps = 14/229 (6%)
Query: 198 SRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG 257
S R+ P + +D +R T + LLTA +E++LS I+ L E L L+ER
Sbjct: 16 SSRREPDTSGLVSTDLVRVYLNTIGKTALLTAEQEVELSKRIEAGLYAERL---LTERQL 72
Query: 258 GSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+P + A D G K ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 73 -TPALQRDYKALAAD----------GKAAKRHLLEANLRLVVSVAKRYTGHGMTFLDLIQ 121
Query: 318 EGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEA 377
EG GL+R EKFD +KGFKFSTYA WWI+QA+ ++++D RTIRLP H+ E +V
Sbjct: 122 EGNVGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAMADSGRTIRLPVHLAEQVNKVVRT 181
Query: 378 RKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQ 426
R++++ E R P EE+ ++ +R+ +L + SLDQ +G ++
Sbjct: 182 RRRIHQELEREPTAEELGLELDMTPERITELLEYSRDLVSLDQTVGADE 230
>gi|119487601|ref|ZP_01621211.1| RNA polymerase sigma-like factor [Lyngbya sp. PCC 8106]
gi|119455770|gb|EAW36906.1| RNA polymerase sigma-like factor [Lyngbya sp. PCC 8106]
Length = 404
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 122/203 (60%), Gaps = 26/203 (12%)
Query: 249 REVLSERCGGSPTFAQWAAAAGVDQRELR-------RRL---------------NYGILC 286
R L + G SP+ +WAA +GV+ +L+ RR GI
Sbjct: 106 RSRLVAQLGHSPSLERWAAVSGVEVSDLKPIIAAGKRRWAELAELTVEELDQVQTEGIKA 165
Query: 287 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI 346
KD MI +N+RLV+S+AK YQ G+ L DL+QEG GL R EKFD ++G++FSTY++WWI
Sbjct: 166 KDHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTRGYRFSTYSYWWI 225
Query: 347 KQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLH 406
+Q + ++++ QSRTIRLP H+ E ++K+A++++ E GR +++A ++ ++
Sbjct: 226 RQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGRIATIDDIAAELEMTPAQVR 285
Query: 407 AVLLSPKAPR--SLDQKIGINQN 427
VLL K PR SL+ K+G +++
Sbjct: 286 EVLL--KVPRSVSLETKVGSDKD 306
>gi|289450258|ref|YP_003475183.1| RNA polymerase sigma factor RpoD [Clostridiales genomosp. BVAB3
str. UPII9-5]
gi|289184805|gb|ADC91230.1| RNA polymerase sigma factor RpoD [Clostridiales genomosp. BVAB3
str. UPII9-5]
Length = 353
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 65/138 (47%), Positives = 96/138 (69%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
KD++ +N+RLV+SIAK Y G GM DL+QEG GL++ +KFD KGFKFSTYA WW
Sbjct: 116 AKDRLCEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVDKFDYEKGFKFSTYATWW 175
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL E GR P EE+A+ G+S +++
Sbjct: 176 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQELGREPEVEELAQEMGISPEKV 235
Query: 406 HAVLLSPKAPRSLDQKIG 423
+ + P SL++ IG
Sbjct: 236 REIQKISQEPVSLEKPIG 253
>gi|434393099|ref|YP_007128046.1| RNA polymerase, sigma subunit, RpsC/SigC [Gloeocapsa sp. PCC 7428]
gi|428264940|gb|AFZ30886.1| RNA polymerase, sigma subunit, RpsC/SigC [Gloeocapsa sp. PCC 7428]
Length = 413
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 122/204 (59%), Gaps = 26/204 (12%)
Query: 244 KLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRL----------------------N 281
+L ++E L+ G P+ +WA +AG++ EL+ L +
Sbjct: 110 QLMAVQERLTSELGHRPSLERWATSAGIEVAELKPLLIKGKRRWAEITGLTVQELEQIQS 169
Query: 282 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 341
G K+ MI +N+RLV+S+AK YQ G+ L DLVQEG GL R +KFD +KG++FSTY
Sbjct: 170 EGNRAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVDKFDPTKGYRFSTY 229
Query: 342 AHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLS 401
A+WWI+Q + ++++ QSRTIRLP H+ E ++K+A++++ E GR P +++A ++
Sbjct: 230 AYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGRTPTIDDIAAELEMT 289
Query: 402 MKRLHAVLLSPKAPR--SLDQKIG 423
++ VLL + PR SL+ K+G
Sbjct: 290 PPQVREVLL--RVPRSVSLETKVG 311
>gi|134098380|ref|YP_001104041.1| RNA polymerase sigma factor [Saccharopolyspora erythraea NRRL 2338]
gi|291006918|ref|ZP_06564891.1| RNA polymerase sigma factor [Saccharopolyspora erythraea NRRL 2338]
gi|133911003|emb|CAM01116.1| RNA polymerase major sigma factor [Saccharopolyspora erythraea NRRL
2338]
Length = 467
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 66/151 (43%), Positives = 103/151 (68%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+R+LR + G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD
Sbjct: 217 RRDLRWIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDY 276
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P E
Sbjct: 277 TKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPE 336
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
E+A+ ++ +++ + + P SLDQ IG
Sbjct: 337 ELAKEMDITPEKVLEIQQYAREPISLDQTIG 367
>gi|375094960|ref|ZP_09741225.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
marina XMU15]
gi|374655693|gb|EHR50526.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
marina XMU15]
Length = 470
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 102/153 (66%), Gaps = 4/153 (2%)
Query: 275 ELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
++RR L + G K ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 218 QMRRDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 277
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P
Sbjct: 278 DYTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPT 337
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
EE+A+ +S +++ + + P SLDQ IG
Sbjct: 338 PEELAKEMDISPEKVLEIQQYAREPISLDQTIG 370
>gi|406914403|gb|EKD53587.1| hypothetical protein ACD_61C00009G0004 [uncultured bacterium]
Length = 367
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 65/142 (45%), Positives = 99/142 (69%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
KD + SN+RLV+SIAK Y G GM+ DL+QEG +GL+R EK+D +KGFKFSTYA WW
Sbjct: 130 AKDMLTKSNLRLVVSIAKKYMGRGMSFLDLIQEGNKGLIRAVEKYDWTKGFKFSTYATWW 189
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P +EEVAE + +++
Sbjct: 190 IRQAITRAIADQARTIRIPVHMVETINKLIRTQRKLMQDLGREPTDEEVAEELETTPEKV 249
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
+L + SL+ IG +++
Sbjct: 250 REILKIAQKTTSLETPIGDDED 271
>gi|238927759|ref|ZP_04659519.1| possible DNA-directed RNA polymerase sigma subunit SigA
[Selenomonas flueggei ATCC 43531]
gi|238884475|gb|EEQ48113.1| possible DNA-directed RNA polymerase sigma subunit SigA
[Selenomonas flueggei ATCC 43531]
Length = 382
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 103/158 (65%), Gaps = 1/158 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL RR+ G + ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD S
Sbjct: 132 ELARRMEAGDEAARHRLEEANLRLVVSIAKRYAGRGMMFLDLIQEGNLGLLKAVEKFDYS 191
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE + +QL E GR P EE
Sbjct: 192 KGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKYIRISRQLLQELGRDPTPEE 251
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPS 431
+A GLS+ R+ ++ + P SL+ IG ++ + S
Sbjct: 252 IAHRMGLSVARVREIMKISQEPVSLETPIGEEEDTRLS 289
>gi|257056422|ref|YP_003134254.1| RNA polymerase, sigma 70 subunit, RpoD [Saccharomonospora viridis
DSM 43017]
gi|256586294|gb|ACU97427.1| RNA polymerase, sigma 70 subunit, RpoD [Saccharomonospora viridis
DSM 43017]
Length = 439
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 102/153 (66%), Gaps = 4/153 (2%)
Query: 275 ELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
++RR L + G K ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 187 QMRRDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 246
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P
Sbjct: 247 DYTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPT 306
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
EE+A+ +S +++ + + P SLDQ IG
Sbjct: 307 PEELAKEMDISPEKVLEIQQYAREPISLDQTIG 339
>gi|220932077|ref|YP_002508985.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothermothrix
orenii H 168]
gi|219993387|gb|ACL69990.1| RNA polymerase, sigma 70 subunit, RpoD family [Halothermothrix
orenii H 168]
Length = 358
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 64/138 (46%), Positives = 94/138 (68%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K +++ +N+RLV+SIAK Y G GM+ DL+QEG GL++ EKFD KG+KFSTYA WW
Sbjct: 121 AKRELVEANLRLVVSIAKKYVGRGMSFLDLIQEGNMGLIKAVEKFDYRKGYKFSTYATWW 180
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE+ E G+ +++
Sbjct: 181 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQEKGREPTPEEIGEEMGMPAEKV 240
Query: 406 HAVLLSPKAPRSLDQKIG 423
+L + P SL+ IG
Sbjct: 241 REILKIAQEPVSLETPIG 258
>gi|453363975|dbj|GAC80290.1| RNA polymerase sigma factor SigB [Gordonia malaquae NBRC 108250]
Length = 332
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 134/242 (55%), Gaps = 20/242 (8%)
Query: 200 RKRPSVQEVDY------SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLS 253
R RP++ E D +D +R + LL A +E++L+ I+ L + L
Sbjct: 16 RTRPALTEQDLDAQSPSADLVRVYLNGIGRTALLNAEQEVELAKQIEAGLYAKHL----- 70
Query: 254 ERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQ 313
A +R+L G + ++ +N+RLV+S+AK Y G GM L
Sbjct: 71 --------LATKKRLTAAKKRDLNIIAREGDAARAHLLEANLRLVVSLAKRYTGRGMPLL 122
Query: 314 DLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYR 373
DL+QEG GL+R AEKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE +
Sbjct: 123 DLIQEGNLGLIRAAEKFDYAKGFKFSTYATWWIRQAISRGMADQSRTIRLPVHLVEQVNK 182
Query: 374 VKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVC 433
+ R++L+ + GR ++E+A +G+ +++ ++ + P SLD +G ++ P
Sbjct: 183 LARIRRELHQQLGREATDDELAAESGIPAEKIADLMDHSRDPVSLDMPVGSDEE-APLGD 241
Query: 434 FI 435
FI
Sbjct: 242 FI 243
>gi|451944378|ref|YP_007465014.1| RNA polymerase sigma factor [Corynebacterium halotolerans YIM 70093
= DSM 44683]
gi|451903765|gb|AGF72652.1| RNA polymerase sigma factor [Corynebacterium halotolerans YIM 70093
= DSM 44683]
Length = 517
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 128/225 (56%), Gaps = 3/225 (1%)
Query: 199 RRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGG 258
R+ R Q +D +R LL A +E+ L+ I+ L + + + E
Sbjct: 196 RQARKDAQLTASADSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYADYRMQQMEEAFAA 255
Query: 259 SPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQE 318
A+ A +R+LR G K+ ++ +N+RLV+S+AK Y G GM DL+QE
Sbjct: 256 GDKDAKLTPAL---KRDLRAISRDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQE 312
Query: 319 GCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEAR 378
G GL+R EKFD SKG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +
Sbjct: 313 GNLGLIRAVEKFDYSKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQ 372
Query: 379 KQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
++L + GR P +E+A+ ++ +++ + + P SLDQ IG
Sbjct: 373 RELLQDLGREPTPQELAKEMDITEEKVLEIQQYAREPISLDQTIG 417
>gi|296171852|ref|ZP_06852951.1| RNA polymerase sigma factor rpoD [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295893936|gb|EFG73705.1| RNA polymerase sigma factor rpoD [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length = 503
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 121/198 (61%), Gaps = 9/198 (4%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L ++ER P AQ +R++ G
Sbjct: 215 LLNAEEEVELAKRIEAGLYATQLMAEMAERGDKLPA-AQ--------RRDMMWICRDGDR 265
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 266 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 325
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 326 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 385
Query: 406 HAVLLSPKAPRSLDQKIG 423
+ + P SLDQ IG
Sbjct: 386 LEIQQYAREPISLDQTIG 403
>gi|254526733|ref|ZP_05138785.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9202]
gi|221538157|gb|EEE40610.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9202]
Length = 333
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 122/202 (60%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ +E+ L +Q+ +++E L E G P+ + + + +++RL G
Sbjct: 38 LLSHEQEITLGRQVQEYMEVERAELELIELAGDKPSIDELSTKLNLSTSIIKKRLRAGQR 97
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+WW
Sbjct: 98 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYAYWW 157
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+Q + ++++++SR IRLP H+ E ++K+ +++L E R P E+A+ L +
Sbjct: 158 IRQGITRAIAEKSRAIRLPIHITEMLNKLKKGQRELSQEMSRTPTVSELAKYVELPEDDV 217
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
++ P SL+ K+G ++
Sbjct: 218 KDLMCKAGQPVSLETKVGDGED 239
>gi|429736608|ref|ZP_19270500.1| RNA polymerase sigma factor RpoD [Selenomonas sp. oral taxon 138
str. F0429]
gi|429154629|gb|EKX97351.1| RNA polymerase sigma factor RpoD [Selenomonas sp. oral taxon 138
str. F0429]
Length = 372
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 66/142 (46%), Positives = 98/142 (69%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
+ ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD SKG+KFSTYA WW
Sbjct: 135 ARHRLEEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYSKGYKFSTYATWW 194
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE+A+ G+S+ R+
Sbjct: 195 IRQAITRAIADQARTIRIPVHMVETINKLIRISRQLLQELGRDPRPEEIAKEMGISVARV 254
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
H ++ + P SL+ IG ++
Sbjct: 255 HEIMKIAQEPVSLETPIGEEED 276
>gi|334127198|ref|ZP_08501127.1| DNA-directed RNA polymerase sigma subunit SigA [Centipeda
periodontii DSM 2778]
gi|333389974|gb|EGK61129.1| DNA-directed RNA polymerase sigma subunit SigA [Centipeda
periodontii DSM 2778]
Length = 372
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 66/142 (46%), Positives = 98/142 (69%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
+ ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD SKG+KFSTYA WW
Sbjct: 135 ARHRLEEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYSKGYKFSTYATWW 194
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE+A+ G+S+ R+
Sbjct: 195 IRQAITRAIADQARTIRIPVHMVETINKLVRISRQLLQELGRDPRPEEIAKEMGISVVRV 254
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
H ++ + P SL+ IG ++
Sbjct: 255 HEIMKIAQEPVSLETPIGEEED 276
>gi|113475621|ref|YP_721682.1| RNA polymerase subunit sigma 28 [Trichodesmium erythraeum IMS101]
gi|110166669|gb|ABG51209.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 410
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 120/207 (57%), Gaps = 22/207 (10%)
Query: 239 IQDLLKLEGLREVLSERCGGSPTFAQWAAAA----------------------GVDQREL 276
IQ +++ +R+ L+ R G P+F +W A G++ +EL
Sbjct: 102 IQRYVEMIKIRDRLAARLGHKPSFERWLKAGNLSMAELKEIIAVGKLRWAKLTGLNVKEL 161
Query: 277 RRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF 336
+ GI + +MI++N+RLV+SIAK YQ G+ L DL+QEG GL R EKFD +G+
Sbjct: 162 EQIQTEGIEARHQMISTNLRLVVSIAKKYQNRGVELLDLIQEGTLGLERAVEKFDPQRGY 221
Query: 337 KFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAE 396
+FSTYA+WWI+Q + ++++ QSRTIRLP H+ E ++K+ +++++ E G EE+A
Sbjct: 222 RFSTYAYWWIRQGITRAIATQSRTIRLPIHVSEKLNKIKKVQQKIFQEKGYTAKVEEIAR 281
Query: 397 ATGLSMKRLHAVLLSPKAPRSLDQKIG 423
++ ++ VL+ SL+ K+G
Sbjct: 282 ELKITAAQVREVLVKIPHSVSLETKVG 308
>gi|453382635|dbj|GAC82930.1| RNA polymerase sigma factor SigB [Gordonia paraffinivorans NBRC
108238]
Length = 340
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 85/240 (35%), Positives = 134/240 (55%), Gaps = 20/240 (8%)
Query: 202 RPSVQEVDY------SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 255
RP++ E D +D +R + LL A +E++L+ I+ L + L
Sbjct: 26 RPAMTEQDLDAQSPAADLVRVYLNGIGRTALLNAEQEVELAKQIEAGLYAKHL------- 78
Query: 256 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 315
A + +R+L+ + G + ++ +N+RLV+S+AK Y G GM L DL
Sbjct: 79 ------LATKKRLSAAKKRDLQIIVREGEAARAHLLEANLRLVVSLAKRYTGRGMPLLDL 132
Query: 316 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVK 375
+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++
Sbjct: 133 IQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLA 192
Query: 376 EARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
+++L+ + GR +EE+A +G+ +++ +L + P SLD +G N P FI
Sbjct: 193 RIKRELHQQLGREATDEELANESGIPAEKIADLLDHSRDPVSLDMPVG-NDEEAPLGDFI 251
>gi|345014897|ref|YP_004817251.1| RpoD subfamily RNA polymerase sigma-70 subunit [Streptomyces
violaceusniger Tu 4113]
gi|344041246|gb|AEM86971.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces
violaceusniger Tu 4113]
Length = 414
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 119/198 (60%), Gaps = 13/198 (6%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+A EE++L+ ++ L E E+ G +P A +L R + G +
Sbjct: 130 LLSAVEEVELARRVEAGLFAE-------EKLGNTPDLDSQLAV------DLDRLVVLGRV 176
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G+KFSTYA WW
Sbjct: 177 AKRRLIEANLRLVVSVAKRYIGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWW 236
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++L+DQ+RTIR+P H+VE RV ++++ E G P EEVA L +R+
Sbjct: 237 IRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPEEVAAHLDLLPERV 296
Query: 406 HAVLLSPKAPRSLDQKIG 423
VL + P SL +G
Sbjct: 297 SEVLRLAQEPVSLHAPVG 314
>gi|269836760|ref|YP_003318988.1| RpoD subfamily RNA polymerase sigma-70 subunit [Sphaerobacter
thermophilus DSM 20745]
gi|269786023|gb|ACZ38166.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Sphaerobacter
thermophilus DSM 20745]
Length = 538
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 67/145 (46%), Positives = 97/145 (66%)
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 342
G + + K+ +N+RLV+S+AK Y G GM++ DLVQEG GL+R EKF KGFKFSTYA
Sbjct: 298 GDIARKKLTEANLRLVVSVAKKYGGRGMSMLDLVQEGNLGLIRAVEKFQHHKGFKFSTYA 357
Query: 343 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSM 402
WWI+QA+ ++++DQ+RTIR+P HMVE R+ ++L E GR P +EE+A GL
Sbjct: 358 TWWIRQAITRAIADQARTIRIPVHMVEQINRLIRTSRRLQQELGREPTSEEIAAEMGLPP 417
Query: 403 KRLHAVLLSPKAPRSLDQKIGINQN 427
++ +L + P SL+ IG ++
Sbjct: 418 DKVREILKISQEPVSLEMPIGEEED 442
>gi|406926592|gb|EKD62776.1| hypothetical protein ACD_52C00059G0002 [uncultured bacterium]
Length = 359
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 66/138 (47%), Positives = 96/138 (69%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
KDK+I SN+RLV+SIAK Y G G++L DL+QEG +GL+R EK+D +GFKFSTYA WW
Sbjct: 122 AKDKLIESNLRLVVSIAKKYIGRGLSLLDLIQEGNQGLIRAVEKYDWRRGFKFSTYATWW 181
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++L E GR P EE+AE L+ +R+
Sbjct: 182 IRQAITRAIADQARTIRIPVHMVETINKLYRTSRKLMQELGREPTPEEIAEEMELTEERV 241
Query: 406 HAVLLSPKAPRSLDQKIG 423
+ + SL+ +G
Sbjct: 242 REIFKISQEVTSLETPVG 259
>gi|386005579|ref|YP_005923858.1| RNA polymerase sigma factor [Mycobacterium tuberculosis RGTB423]
gi|380726067|gb|AFE13862.1| RNA polymerase sigma factor [Mycobacterium tuberculosis RGTB423]
Length = 324
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 119/198 (60%), Gaps = 9/198 (4%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L LSER P +R++ G
Sbjct: 36 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLP---------AAQRRDMMWICRDGDR 86
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 87 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 146
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 147 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 206
Query: 406 HAVLLSPKAPRSLDQKIG 423
+ + P SLDQ IG
Sbjct: 207 LEIQQYAREPISLDQTIG 224
>gi|297199501|ref|ZP_06916898.1| RNA polymerase sigma factor RpoS [Streptomyces sviceus ATCC 29083]
gi|297147415|gb|EDY56986.2| RNA polymerase sigma factor RpoS [Streptomyces sviceus ATCC 29083]
Length = 428
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 119/198 (60%), Gaps = 13/198 (6%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE++L+ ++ L E E+ +P A +L R + G +
Sbjct: 144 LLTAVEEVELARRVEAGLFAE-------EKLSSTPDLDSQLAL------DLDRLVVLGRM 190
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G+KFSTYA WW
Sbjct: 191 AKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWW 250
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++L+DQ+RTIR+P H+VE RV ++++ E G P EEVA L+ +R+
Sbjct: 251 IRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPEEVAAHLDLAPERV 310
Query: 406 HAVLLSPKAPRSLDQKIG 423
VL + P SL +G
Sbjct: 311 SEVLRLAQEPVSLHAPVG 328
>gi|296139548|ref|YP_003646791.1| RpoD subfamily RNA polymerase sigma-70 subunit [Tsukamurella
paurometabola DSM 20162]
gi|296027682|gb|ADG78452.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Tsukamurella
paurometabola DSM 20162]
Length = 330
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 86/242 (35%), Positives = 136/242 (56%), Gaps = 20/242 (8%)
Query: 200 RKRPSVQEVDY------SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLS 253
R RP + E D +D +R + LLTA +E++L+ I+ L + L +
Sbjct: 14 RVRPELTEADLDAQSPAADLVRVYLNGIGRTALLTAEDEVELAKRIEAGLYAQHLLDT-K 72
Query: 254 ERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQ 313
+R S +R+L + G + ++ +N+RLV+S+AK Y G GM L
Sbjct: 73 KRLSASK------------KRDLAFIVRDGQAARQHLLEANLRLVVSLAKRYTGRGMPLL 120
Query: 314 DLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYR 373
DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE +
Sbjct: 121 DLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNK 180
Query: 374 VKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVC 433
+ R++L+ + GR + E+A +G+ +++ ++ + P SLD +G ++ P
Sbjct: 181 LARIRRELHQQLGREATDAELAAESGIPAEKIADLMDHSRDPVSLDMPVGSDEE-APLGD 239
Query: 434 FI 435
FI
Sbjct: 240 FI 241
>gi|15232364|ref|NP_190960.1| RNApolymerase sigma-subunit C [Arabidopsis thaliana]
gi|75098239|sp|O24621.1|SIGC_ARATH RecName: Full=RNA polymerase sigma factor sigC; Short=Sigma factor
C; Short=Sigma-C; AltName: Full=RNA polymerase sigma
factor sig3; Short=Atsig3; Short=Sigma factor 3; Flags:
Precursor
gi|2353175|gb|AAB69386.1| sigma factor 3 [Arabidopsis thaliana]
gi|2463554|dbj|BAA22530.1| SigC [Arabidopsis thaliana]
gi|5478585|dbj|BAA82450.1| sigma factor SigC [Arabidopsis thaliana]
gi|7630012|emb|CAB88354.1| sigma factor SigC [Arabidopsis thaliana]
gi|133778870|gb|ABO38775.1| At3g53920 [Arabidopsis thaliana]
gi|332645638|gb|AEE79159.1| RNApolymerase sigma-subunit C [Arabidopsis thaliana]
Length = 571
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 127/193 (65%), Gaps = 1/193 (0%)
Query: 232 EMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMI 291
E ++S G++ + +E +R L E G + + WAAAAG++++ L R L+YG C+D+++
Sbjct: 278 ETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELV 337
Query: 292 TSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVR 351
S LV+ +A+NY+G G+ +DL+Q G G+++GAE+FD ++G+KFSTY +WI++++
Sbjct: 338 KSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMS 397
Query: 352 KSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHAVLL 410
+S +R + +P ++ +++ARK L + +G ++ +EE+A+ TG S+K++ A
Sbjct: 398 TMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQ 457
Query: 411 SPKAPRSLDQKIG 423
K S+D+K+G
Sbjct: 458 CLKVVGSIDKKVG 470
>gi|330466466|ref|YP_004404209.1| RNA polymerase sigma factor SigB [Verrucosispora maris AB-18-032]
gi|328809437|gb|AEB43609.1| RNA polymerase sigma factor SigB [Verrucosispora maris AB-18-032]
Length = 335
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 128/213 (60%), Gaps = 13/213 (6%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+D +R ++LLTA +E++L+ I+ L E E L+ C +P AQ A
Sbjct: 36 TDLVRAYLNGIGRTKLLTAAQEVELAKRIEAGLFAE---EKLTT-C--TPVSAQLQADLT 89
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
+ +E G K+ ++ +N+RLV+SIAK Y G GM DL+QEG GL+R EKF
Sbjct: 90 LIAQE-------GQAAKNHLLEANLRLVVSIAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 142
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE R+ AR++L GR P+
Sbjct: 143 DYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEQVNRMVRARRELSVSLGREPS 202
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
E+A A + ++ ++ + P SLDQ +G
Sbjct: 203 VAEIARALDVPEFQVIELISYDREPVSLDQTVG 235
>gi|254293486|ref|YP_003059509.1| RNA polymerase sigma factor RpoD [Hirschia baltica ATCC 49814]
gi|254042017|gb|ACT58812.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Hirschia baltica
ATCC 49814]
Length = 683
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 99/143 (69%)
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
+ K +M+ +N+RLVISIAK Y G+ DL+QEG GL++ +KF+ +G+KFSTYA W
Sbjct: 444 VAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 503
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+QA+ +S++DQ+RTIR+P HM+E ++ ++Q+ E GR P EE+AE GL +++
Sbjct: 504 WIRQAITRSIADQARTIRIPVHMIETINKIVRTQRQMLHEIGREPTPEELAEKLGLPLEK 563
Query: 405 LHAVLLSPKAPRSLDQKIGINQN 427
+ VL K P SL+ IG +++
Sbjct: 564 IRKVLKIAKEPISLETPIGDDED 586
>gi|374992526|ref|YP_004968021.1| RNA polymerase sigma factor [Streptomyces bingchenggensis BCW-1]
gi|297163178|gb|ADI12890.1| RNA polymerase sigma factor [Streptomyces bingchenggensis BCW-1]
Length = 336
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 89/214 (41%), Positives = 121/214 (56%), Gaps = 19/214 (8%)
Query: 208 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
V +DP++ + RLLTA +E+ L+ I+ L E L L ER
Sbjct: 33 VGSTDPVKDYLKLIARVRLLTAEQEVDLAKRIEAGLYAERL---LRER------------ 77
Query: 268 AAGVDQR---ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV 324
G+D+ EL G K ++ +N+RLV+S+AK Y G G+ DL+QEG GL+
Sbjct: 78 -PGLDRHSRGELGALAEDGHRAKTHLVEANLRLVVSVAKRYTGRGLAFLDLIQEGNTGLI 136
Query: 325 RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSE 384
R AEKFD +KGFKFSTYA WWIKQAV ++L+DQSRTIR+P H VE R+ R++L +
Sbjct: 137 RAAEKFDYAKGFKFSTYATWWIKQAVSRALADQSRTIRVPVHTVELINRIARVRRELILD 196
Query: 385 NGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSL 418
G P E+VAE + + RL + K P SL
Sbjct: 197 TGAEPTPEQVAEKAEVPVGRLAELDGYTKEPVSL 230
>gi|312139434|ref|YP_004006770.1| sigma-70 factor siga [Rhodococcus equi 103S]
gi|325672677|ref|ZP_08152373.1| RNA polymerase principal sigma factor SigA [Rhodococcus equi ATCC
33707]
gi|311888773|emb|CBH48085.1| sigma-70 factor SigA [Rhodococcus equi 103S]
gi|325556554|gb|EGD26220.1| RNA polymerase principal sigma factor SigA [Rhodococcus equi ATCC
33707]
Length = 459
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 120/199 (60%), Gaps = 11/199 (5%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 284
LL A EE++L+ I+ L + E+ + SPT D+R L G
Sbjct: 171 LLNAEEEVELAKRIEAGLFATHKMNEMAEKGEKPSPT----------DRRNLNWITRDGN 220
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA W
Sbjct: 221 RAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATW 280
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ ++
Sbjct: 281 WIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEK 340
Query: 405 LHAVLLSPKAPRSLDQKIG 423
+ + + P SLDQ IG
Sbjct: 341 VLEIQQYAREPISLDQTIG 359
>gi|389575813|ref|ZP_10165841.1| RNA polymerase sigma factor, sigma-70 family [Eubacterium
cellulosolvens 6]
gi|389311298|gb|EIM56231.1| RNA polymerase sigma factor, sigma-70 family [Eubacterium
cellulosolvens 6]
Length = 373
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 69/150 (46%), Positives = 101/150 (67%), Gaps = 1/150 (0%)
Query: 275 ELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
EL +R+ G + K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD
Sbjct: 124 ELAKRMEEGDEVAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYR 183
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P EE
Sbjct: 184 KGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQEYGREPTPEE 243
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
+A+ +S++R+ +L + P SL+ IG
Sbjct: 244 IAKNMNMSVERVREILKISQEPVSLETPIG 273
>gi|169824520|ref|YP_001692131.1| RNA polymerase sigma A factor [Finegoldia magna ATCC 29328]
gi|302380672|ref|ZP_07269137.1| RNA polymerase sigma factor RpoD [Finegoldia magna ACS-171-V-Col3]
gi|303233690|ref|ZP_07320344.1| RNA polymerase sigma factor RpoD [Finegoldia magna BVS033A4]
gi|417926538|ref|ZP_12569936.1| RNA polymerase sigma factor RpoD [Finegoldia magna
SY403409CC001050417]
gi|167831325|dbj|BAG08241.1| RNA polymerase sigma A factor [Finegoldia magna ATCC 29328]
gi|302311615|gb|EFK93631.1| RNA polymerase sigma factor RpoD [Finegoldia magna ACS-171-V-Col3]
gi|302495124|gb|EFL54876.1| RNA polymerase sigma factor RpoD [Finegoldia magna BVS033A4]
gi|341589053|gb|EGS32420.1| RNA polymerase sigma factor RpoD [Finegoldia magna
SY403409CC001050417]
Length = 388
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 65/138 (47%), Positives = 96/138 (69%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K K+ +N+RLV+SIAK Y G GM+ DL+QEG GL++ +KFD ++GFKFSTYA WW
Sbjct: 151 AKKKLAEANLRLVVSIAKRYVGRGMSFLDLIQEGNLGLMKAVDKFDYTRGFKFSTYATWW 210
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE R+ +QL + GR P NEE+A+ G+ ++++
Sbjct: 211 IRQAITRAIADQARTIRIPVHMVETINRLVRIERQLLQDLGRDPTNEEIAKEMGIEVEKV 270
Query: 406 HAVLLSPKAPRSLDQKIG 423
V + P SL+ IG
Sbjct: 271 REVRKIAQEPVSLETPIG 288
>gi|148654464|ref|YP_001274669.1| RpoD family RNA polymerase sigma factor [Roseiflexus sp. RS-1]
gi|148566574|gb|ABQ88719.1| RNA polymerase, sigma 70 subunit, RpoD family [Roseiflexus sp.
RS-1]
Length = 541
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 106/163 (65%), Gaps = 2/163 (1%)
Query: 263 AQWAAAAGVDQ--RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGC 320
Q A AA DQ R+ ++ G ++ + +N+RLV+S+AK Y G G+ L DL+QEG
Sbjct: 279 VQQACAAARDQLWRDWNLAIDQGKTAREDLTQANLRLVVSVAKKYIGRGLQLLDLIQEGN 338
Query: 321 RGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQ 380
GL+R EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE R+ ++
Sbjct: 339 VGLIRAVEKFDYRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINRLMRESRR 398
Query: 381 LYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
+ E GR P +EE++ A G+ + ++ ++ + P SL+ +G
Sbjct: 399 MLQELGREPTDEELSRALGIPVDKVRSIRKTSLEPVSLETPVG 441
>gi|452948554|gb|EME54032.1| RNA polymerase primary sigma factor [Amycolatopsis decaplanina DSM
44594]
Length = 466
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 79/199 (39%), Positives = 121/199 (60%), Gaps = 11/199 (5%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 284
LL A EE++L+ I+ L E +R E G Q +R+L+ + G
Sbjct: 178 LLNAEEEVELAKRIEAGLYAAERVRNAEEE---GEKLVTQM-------RRDLKWIVRDGE 227
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 344
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA W
Sbjct: 228 RAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATW 287
Query: 345 WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKR 404
WI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ +S ++
Sbjct: 288 WIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDISPEK 347
Query: 405 LHAVLLSPKAPRSLDQKIG 423
+ + + P SLDQ IG
Sbjct: 348 VLEIQQYAREPISLDQTIG 366
>gi|238927758|ref|ZP_04659518.1| DNA-directed RNA polymerase sigma subunit SigA [Selenomonas
flueggei ATCC 43531]
gi|238884474|gb|EEQ48112.1| DNA-directed RNA polymerase sigma subunit SigA [Selenomonas
flueggei ATCC 43531]
Length = 383
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 65/142 (45%), Positives = 99/142 (69%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
+ ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD SKG+KFSTYA WW
Sbjct: 146 ARHRLEEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYSKGYKFSTYATWW 205
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P+ EE+A+ G+++ R+
Sbjct: 206 IRQAITRAIADQARTIRIPVHMVETINKLVRISRQLLQELGRDPHPEEIAKEMGITVARV 265
Query: 406 HAVLLSPKAPRSLDQKIGINQN 427
H ++ + P SL+ IG ++
Sbjct: 266 HEIMKIAQEPVSLETPIGEEED 287
>gi|291439801|ref|ZP_06579191.1| RNA polymerase sigma factor [Streptomyces ghanaensis ATCC 14672]
gi|291342696|gb|EFE69652.1| RNA polymerase sigma factor [Streptomyces ghanaensis ATCC 14672]
Length = 390
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 119/198 (60%), Gaps = 13/198 (6%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE++L+ ++ L E E+ +P A +L R + G +
Sbjct: 106 LLTAAEEVELARRVEAGLFAE-------EKLRLTPDLDSRLA------HDLDRLVVMGRM 152
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G+KFSTYA WW
Sbjct: 153 AKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWW 212
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++L+DQ+RTIR+P H+VE RV ++++ E GR P EEVA L +R+
Sbjct: 213 IRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGREPTPEEVAAHLDLPPERV 272
Query: 406 HAVLLSPKAPRSLDQKIG 423
VL + P SL +G
Sbjct: 273 GEVLRLAQEPVSLHAPVG 290
>gi|378717650|ref|YP_005282539.1| RNA polymerase sigma factor SigB [Gordonia polyisoprenivorans VH2]
gi|375752353|gb|AFA73173.1| RNA polymerase sigma factor SigB [Gordonia polyisoprenivorans VH2]
Length = 339
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 140/242 (57%), Gaps = 24/242 (9%)
Query: 202 RPSVQEVDY------SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGL--REVLS 253
RP++ E D +D +R + LL A +E++L+ I+ GL + VL+
Sbjct: 25 RPAMTEQDLDAQSPAADLVRVYLNGIGRTALLNAEQEVELAKQIE-----AGLYAKHVLA 79
Query: 254 ERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQ 313
R + +AA +R+L + G + ++ +N+RLV+S+AK Y G GM L
Sbjct: 80 TR-------KRLSAAK---KRDLNTVVREGEAARAHLLEANLRLVVSLAKRYTGRGMPLL 129
Query: 314 DLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYR 373
DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE +
Sbjct: 130 DLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNK 189
Query: 374 VKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVC 433
+ +++L+ + GR ++E+A +G+ +++ +L + P SLD +G ++ P
Sbjct: 190 IARIKRELHQQLGREATDDELANESGIPAEKIADLLDHSRDPVSLDMPVGSDEE-APLGD 248
Query: 434 FI 435
FI
Sbjct: 249 FI 250
>gi|313140538|ref|ZP_07802731.1| RNA polymerase principal sigma factor [Bifidobacterium bifidum
NCIMB 41171]
gi|313133048|gb|EFR50665.1| RNA polymerase principal sigma factor [Bifidobacterium bifidum
NCIMB 41171]
Length = 500
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 127/217 (58%), Gaps = 20/217 (9%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP++ YL+ S LL A +E+ LS I+ L + L + S+
Sbjct: 199 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESD--------------- 242
Query: 270 GVD---QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 326
G+D +REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R
Sbjct: 243 GMDFKRKRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRA 302
Query: 327 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG 386
EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++Q+ + G
Sbjct: 303 VEKFDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPVHMVEVINKLSRVQRQMLQDLG 362
Query: 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
R P +E+A + ++++ V + P SL +G
Sbjct: 363 REPTPDELARELDMPVEKVQEVQKYGREPISLHTPLG 399
>gi|359419328|ref|ZP_09211286.1| RNA polymerase sigma factor SigA [Gordonia araii NBRC 100433]
gi|358244735|dbj|GAB09355.1| RNA polymerase sigma factor SigA [Gordonia araii NBRC 100433]
Length = 508
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 67/152 (44%), Positives = 102/152 (67%), Gaps = 1/152 (0%)
Query: 273 QRELRRRLNY-GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 331
QR R + Y G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD
Sbjct: 257 QRRALREVAYDGTKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 316
Query: 332 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 391
+KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P
Sbjct: 317 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTP 376
Query: 392 EEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
EE+A+ ++ +++ + + P SLDQ IG
Sbjct: 377 EELAKEMDITPEKVLEIQQYAREPISLDQTIG 408
>gi|154484558|ref|ZP_02027006.1| hypothetical protein EUBVEN_02272 [Eubacterium ventriosum ATCC
27560]
gi|149734406|gb|EDM50323.1| RNA polymerase sigma factor RpoD [Eubacterium ventriosum ATCC
27560]
Length = 429
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 103/147 (70%)
Query: 277 RRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF 336
+R+ I+ K+K+I +N+RLV+SIAK Y G GM+ DLVQEG GL++G EKFD +KG+
Sbjct: 182 KRKTEGDIVAKEKLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGY 241
Query: 337 KFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAE 396
K STYA WWI+Q+V ++L+D +RTIR+P HMVE R+ + +++L E G P+ +E+A
Sbjct: 242 KLSTYATWWIRQSVTRALADHARTIRVPVHMVETINRMSKMQRKLTLELGYEPSTKELAT 301
Query: 397 ATGLSMKRLHAVLLSPKAPRSLDQKIG 423
A ++ +++ ++ + P SL+ IG
Sbjct: 302 ALDMTEEKVLEIMQIAREPASLETPIG 328
>gi|354617029|ref|ZP_09034545.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Saccharomonospora
paurometabolica YIM 90007]
gi|353218616|gb|EHB83339.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Saccharomonospora
paurometabolica YIM 90007]
Length = 464
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 102/153 (66%), Gaps = 4/153 (2%)
Query: 275 ELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
++RR L + G K ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 212 QMRRDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 271
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P
Sbjct: 272 DYTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPT 331
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
EE+A+ +S +++ + + P SLDQ IG
Sbjct: 332 PEELAKEMDISPEKVLEIQQYAREPISLDQTIG 364
>gi|40353311|gb|AAR84419.1| essential primary sigma 70 factor [Frankia sp. ACN14a]
Length = 214
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 66/141 (46%), Positives = 98/141 (69%)
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 342
G + K K++ +N+RLV+SIAK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA
Sbjct: 26 GQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 85
Query: 343 HWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSM 402
WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++QL + GR P+ EE+A+ L+
Sbjct: 86 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPSPEEIAKEMDLTP 145
Query: 403 KRLHAVLLSPKAPRSLDQKIG 423
++ +L + P SL+ IG
Sbjct: 146 DKVREILKVSQEPVSLETPIG 166
>gi|421733382|ref|ZP_16172488.1| RNA polymerase sigma factor [Bifidobacterium bifidum LMG 13195]
gi|407078624|gb|EKE51424.1| RNA polymerase sigma factor [Bifidobacterium bifidum LMG 13195]
Length = 506
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 127/217 (58%), Gaps = 20/217 (9%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP++ YL+ S LL A +E+ LS I+ L + L + S+
Sbjct: 205 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESD--------------- 248
Query: 270 GVD---QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 326
G+D +REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R
Sbjct: 249 GMDFKRKRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRA 308
Query: 327 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG 386
EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++Q+ + G
Sbjct: 309 VEKFDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPVHMVEVINKLSRVQRQMLQDLG 368
Query: 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
R P +E+A + ++++ V + P SL +G
Sbjct: 369 REPTPDELARELDMPVEKVQEVQKYGREPISLHTPLG 405
>gi|379736727|ref|YP_005330233.1| RNA polymerase sigma factor sigB [Blastococcus saxobsidens DD2]
gi|378784534|emb|CCG04203.1| RNA polymerase sigma factor sigB [Blastococcus saxobsidens DD2]
Length = 328
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 126/227 (55%), Gaps = 13/227 (5%)
Query: 200 RKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGS 259
R+ P + +D +R T + LLTA +E++L+ I+ L E L L+E+ G +
Sbjct: 18 RREPDTSGLVSTDLVRVYLNTIGKTALLTAEQEVELAKRIEAGLYAERL---LAEQQGLT 74
Query: 260 PTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEG 319
P + D G K ++ +N+RLV+S+AK Y G GM DL+QEG
Sbjct: 75 PARKRDYKTLATD----------GKAAKAHLLEANLRLVVSVAKRYTGHGMTFLDLIQEG 124
Query: 320 CRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARK 379
GL+R EKFD +KGFKFSTYA WWI+QA+ ++++D RTIRLP H+ E +V R+
Sbjct: 125 NVGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAMADSGRTIRLPVHLAEQVNKVVRTRR 184
Query: 380 QLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQ 426
+++ E R P EE+ L +R+ +L + SLDQ +G ++
Sbjct: 185 RMHQELEREPTAEELGLELDLPEERIVELLEYSRDLVSLDQTVGTDE 231
>gi|416375138|ref|ZP_11683291.1| Group 2 RNA polymerase sigma factor @ Cyanobacteria-specific
RpoD-like sigma factor, type-7 [Crocosphaera watsonii WH
0003]
gi|357266581|gb|EHJ15189.1| Group 2 RNA polymerase sigma factor @ Cyanobacteria-specific
RpoD-like sigma factor, type-7 [Crocosphaera watsonii WH
0003]
Length = 418
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 107/163 (65%), Gaps = 4/163 (2%)
Query: 263 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 322
+QWA A +D EL GI KD+MI +N+RLV+S+AK YQ G+ L DL+QEG G
Sbjct: 156 SQWAVLANMDVAELEEIQKSGIKAKDEMIKANLRLVVSVAKKYQHRGLELLDLIQEGTLG 215
Query: 323 LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLY 382
L + EKFD KG++FSTYA+WWI+Q + ++++ QSR IRLP H+ E ++K+ ++++
Sbjct: 216 LEKAVEKFDPVKGYRFSTYAYWWIRQGITRAIATQSRIIRLPVHVTEKLNKIKQVQRKIS 275
Query: 383 SENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR--SLDQKIG 423
R+ + EE+ + G++ ++ VL+ K PR SL+ K+G
Sbjct: 276 QSKNRNASLEEIGQELGMTAAQVREVLM--KIPRSVSLEVKVG 316
>gi|311064624|ref|YP_003971349.1| RNA polymerase principal sigma factor HrdB [Bifidobacterium bifidum
PRL2010]
gi|421736043|ref|ZP_16174897.1| RNA polymerase sigma factor [Bifidobacterium bifidum IPLA 20015]
gi|310866943|gb|ADP36312.1| RNA polymerase principal sigma factor HrdB [Bifidobacterium bifidum
PRL2010]
gi|407296670|gb|EKF16198.1| RNA polymerase sigma factor [Bifidobacterium bifidum IPLA 20015]
Length = 506
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 127/217 (58%), Gaps = 20/217 (9%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP++ YL+ S LL A +E+ LS I+ L + L + S+
Sbjct: 205 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESD--------------- 248
Query: 270 GVD---QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 326
G+D +REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R
Sbjct: 249 GMDFKRKRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRA 308
Query: 327 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG 386
EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++Q+ + G
Sbjct: 309 VEKFDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPVHMVEVINKLSRVQRQMLQDLG 368
Query: 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
R P +E+A + ++++ V + P SL +G
Sbjct: 369 REPTPDELARELDMPVEKVQEVQKYGREPISLHTPLG 405
>gi|310287737|ref|YP_003938995.1| RNA polymerase sigma factor [Bifidobacterium bifidum S17]
gi|309251673|gb|ADO53421.1| RNA polymerase sigma factor [Bifidobacterium bifidum S17]
Length = 506
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 127/217 (58%), Gaps = 20/217 (9%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP++ YL+ S LL A +E+ LS I+ L + L + S+
Sbjct: 205 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESD--------------- 248
Query: 270 GVD---QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 326
G+D +REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R
Sbjct: 249 GMDFKRKRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRA 308
Query: 327 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG 386
EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++Q+ + G
Sbjct: 309 VEKFDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPVHMVEVINKLSRVQRQMLQDLG 368
Query: 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
R P +E+A + ++++ V + P SL +G
Sbjct: 369 REPTPDELARELDMPVEKVQEVQKYGREPISLHTPLG 405
>gi|225388598|ref|ZP_03758322.1| hypothetical protein CLOSTASPAR_02334 [Clostridium asparagiforme
DSM 15981]
gi|225045346|gb|EEG55592.1| hypothetical protein CLOSTASPAR_02334 [Clostridium asparagiforme
DSM 15981]
Length = 405
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 97/135 (71%)
Query: 289 KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ 348
+++ +N+RLV+SIAK Y G GM+ DLVQEG GL++ EKFD KG++ STYA WW+KQ
Sbjct: 171 RLVEANLRLVVSIAKRYTGRGMSFLDLVQEGNIGLMKAVEKFDYEKGYRLSTYATWWVKQ 230
Query: 349 AVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAV 408
A+ ++L+DQ+RTIRLP HMVEA +++ ++ L + GR P+N E+AEA G++ KR+ +
Sbjct: 231 AITRALADQARTIRLPVHMVEAVNKIRRTQRDLSVQLGRDPSNRELAEAVGMTEKRVEEL 290
Query: 409 LLSPKAPRSLDQKIG 423
+ + SL+ +G
Sbjct: 291 IQTSGDTVSLETPVG 305
>gi|440778267|ref|ZP_20957033.1| RNA polymerase sigma factor [Mycobacterium avium subsp.
paratuberculosis S5]
gi|436721370|gb|ELP45505.1| RNA polymerase sigma factor [Mycobacterium avium subsp.
paratuberculosis S5]
Length = 509
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 121/198 (61%), Gaps = 9/198 (4%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L ++ER P AQ +R++ G
Sbjct: 221 LLNAEEEVELAKRIEAGLYATQLMSEMAERGEKLPA-AQ--------RRDMMWICRDGDR 271
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 272 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 331
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +++
Sbjct: 332 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKV 391
Query: 406 HAVLLSPKAPRSLDQKIG 423
+ + P SLDQ IG
Sbjct: 392 LEIQQYAREPISLDQTIG 409
>gi|339627021|ref|YP_004718664.1| RpoD subfamily RNA polymerase sigma-70 factor [Sulfobacillus
acidophilus TPY]
gi|379008595|ref|YP_005258046.1| RNA polymerase sigma-70 subunit RpoD [Sulfobacillus acidophilus DSM
10332]
gi|339284810|gb|AEJ38921.1| RNA polymerase, sigma 70 subunit, RpoD family [Sulfobacillus
acidophilus TPY]
gi|361054857|gb|AEW06374.1| RNA polymerase, sigma 70 subunit, RpoD [Sulfobacillus acidophilus
DSM 10332]
Length = 369
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 66/138 (47%), Positives = 96/138 (69%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K K+ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KG+KFSTYA WW
Sbjct: 132 AKRKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYKFSTYATWW 191
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ ++QL E GR P EE+A+ G++++R+
Sbjct: 192 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQEYGREPLPEEIAKEMGITVERV 251
Query: 406 HAVLLSPKAPRSLDQKIG 423
+L + P SL+ IG
Sbjct: 252 REILKVAQEPVSLETPIG 269
>gi|296393377|ref|YP_003658261.1| RpoD subfamily RNA polymerase sigma-70 factor [Segniliparus
rotundus DSM 44985]
gi|296180524|gb|ADG97430.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Segniliparus
rotundus DSM 44985]
Length = 377
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 106/163 (65%), Gaps = 1/163 (0%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 332
+REL+ G + ++ +N+RLV+S+AK Y G G+ L DL+QEG GL+R EKFD
Sbjct: 127 RRELKTVARDGQAARTHLLEANLRLVVSLAKRYTGRGIPLLDLIQEGNLGLIRAMEKFDY 186
Query: 333 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNE 392
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE ++ +++L+ + GR +E
Sbjct: 187 AKGFKFSTYATWWIRQAITRGVADQSRTIRLPVHLVEQVNKLSRIKRELHQQLGREATSE 246
Query: 393 EVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
E++ TG+ R+ +L + P SLD +G ++ P FI
Sbjct: 247 ELSRETGIPEHRIADLLDHSRDPVSLDMPVGADEE-APLGDFI 288
>gi|239626174|ref|ZP_04669205.1| DNA-directed RNA polymerase sigma subunit [Clostridiales bacterium
1_7_47_FAA]
gi|239520404|gb|EEQ60270.1| DNA-directed RNA polymerase sigma subunit [Clostridiales bacterium
1_7_47FAA]
Length = 409
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 66/135 (48%), Positives = 95/135 (70%)
Query: 289 KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ 348
+++ +N+RLV+SIAK Y G GM DLVQEG GL++ EKFD SKG++ STYA WW+KQ
Sbjct: 174 QLVEANLRLVVSIAKRYTGRGMGFLDLVQEGNLGLMKAVEKFDYSKGYRLSTYATWWVKQ 233
Query: 349 AVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAV 408
++ +SL+DQSRTIRLP HMVEA +++ A++ L GR P+ EE+AE G+ KR+ +
Sbjct: 234 SITRSLADQSRTIRLPVHMVEAVNKIRRAQRSLSVRLGREPSTEEIAEEVGMPEKRVTEL 293
Query: 409 LLSPKAPRSLDQKIG 423
+ + SL+ +G
Sbjct: 294 IQASGDTVSLETPVG 308
>gi|294786990|ref|ZP_06752244.1| RNA polymerase sigma (70) factor RpoD [Parascardovia denticolens
F0305]
gi|294485823|gb|EFG33457.1| RNA polymerase sigma (70) factor RpoD [Parascardovia denticolens
F0305]
Length = 403
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 121/213 (56%), Gaps = 11/213 (5%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SDP++ LL A +E+ LS I+ L + L L TF +
Sbjct: 100 SDPVKDYLKQIGRVNLLNAQQEVDLSERIEAGLYAQHL---LDTTPADQMTFQR------ 150
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
+REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 151 --KRELKWAANDGRKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKF 208
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++Q+ + GR P
Sbjct: 209 DWKKGFKFSTYATWWIRQAITRAMADQARTIRVPVHMVEVINKLSRVQRQMLQDLGREPT 268
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
+E+A + ++++ V + P SL +G
Sbjct: 269 PDELARELDMPVEKVQEVQKYGREPISLHTPLG 301
>gi|407983277|ref|ZP_11163934.1| RNA polymerase sigma factor RpoD [Mycobacterium hassiacum DSM
44199]
gi|407375170|gb|EKF24129.1| RNA polymerase sigma factor RpoD [Mycobacterium hassiacum DSM
44199]
Length = 527
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 120/202 (59%), Gaps = 17/202 (8%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY--- 282
LL A EE++L+ I+ L L +E+ PT +LRR +
Sbjct: 239 LLNAEEEVELAKRIEAGLYATHLLNQAAEKGEKLPT-------------QLRRDYQWISR 285
Query: 283 -GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 341
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTY
Sbjct: 286 DGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTY 345
Query: 342 AHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLS 401
A WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++
Sbjct: 346 ATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDIT 405
Query: 402 MKRLHAVLLSPKAPRSLDQKIG 423
+++ + + P SLDQ IG
Sbjct: 406 PEKVLEIQQYAREPISLDQTIG 427
>gi|355682428|ref|ZP_09062438.1| hypothetical protein HMPREF9469_05475 [Clostridium citroniae
WAL-17108]
gi|354811008|gb|EHE95644.1| hypothetical protein HMPREF9469_05475 [Clostridium citroniae
WAL-17108]
Length = 408
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 67/135 (49%), Positives = 95/135 (70%)
Query: 289 KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ 348
K++ +N+RLV+SIAK Y G GM+ DLVQEG GL++ EKFD +KG++ STYA WW+KQ
Sbjct: 173 KLVEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLMKAVEKFDYAKGYRLSTYATWWVKQ 232
Query: 349 AVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAV 408
++ +SL+DQSRTIRLP HMVEA +++ A++ L GR P+ EEVAE G KR+ +
Sbjct: 233 SITRSLADQSRTIRLPVHMVEAVNKIRRAQRSLSVRLGREPSTEEVAEEVGFPEKRVIEL 292
Query: 409 LLSPKAPRSLDQKIG 423
+ + SL+ +G
Sbjct: 293 IQASGDTVSLETPVG 307
>gi|331082069|ref|ZP_08331197.1| RNA polymerase sigma factor rpoD [Lachnospiraceae bacterium
6_1_63FAA]
gi|330405664|gb|EGG85194.1| RNA polymerase sigma factor rpoD [Lachnospiraceae bacterium
6_1_63FAA]
Length = 374
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 66/138 (47%), Positives = 95/138 (68%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KG+KFSTYA WW
Sbjct: 137 AKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYKFSTYATWW 196
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P+ EE+AE +S++R+
Sbjct: 197 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPHPEEIAEEMNMSVERV 256
Query: 406 HAVLLSPKAPRSLDQKIG 423
+L + P SL+ IG
Sbjct: 257 REILKISQEPVSLETPIG 274
>gi|359771702|ref|ZP_09275148.1| RNA polymerase sigma factor SigA [Gordonia effusa NBRC 100432]
gi|359311138|dbj|GAB17926.1| RNA polymerase sigma factor SigA [Gordonia effusa NBRC 100432]
Length = 476
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 143/260 (55%), Gaps = 14/260 (5%)
Query: 167 RSRRQTERKARRTRAAEKAAAN-VMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSR 225
+S+ + + ++ AA+KA+ + V + R+ R + +D +R
Sbjct: 128 KSKDKDKEESDEPSAADKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVA 187
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRL-NYG 283
LL A EE+QL+ I+ L E +R ++ P QR L + G
Sbjct: 188 LLNAEEEVQLAKRIEAGLFAAERIRRIMEAGEKLPPA-----------QRRLYSEVARDG 236
Query: 284 ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH 343
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA
Sbjct: 237 NRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYAT 296
Query: 344 WWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMK 403
WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P EE+A+ ++ +
Sbjct: 297 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPE 356
Query: 404 RLHAVLLSPKAPRSLDQKIG 423
++ + + P SLDQ IG
Sbjct: 357 KVLEIQQYAREPISLDQTIG 376
>gi|408532063|emb|CCK30237.1| RNA polymerase principal sigma factor hrdA [Streptomyces davawensis
JCM 4913]
Length = 437
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 120/198 (60%), Gaps = 13/198 (6%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE++L+ ++ L E E+ +P + G+D L R + G +
Sbjct: 153 LLTAAEEVELARRVEAGLFAE-------EKLSNTPDLD---SQLGLD---LDRLVVMGRM 199
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G+KFSTYA WW
Sbjct: 200 AKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWW 259
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++L+DQ+RTIR+P H+VE RV ++++ E G P EEVA L +R+
Sbjct: 260 IRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPEEVAAHLDLPPERV 319
Query: 406 HAVLLSPKAPRSLDQKIG 423
VL + P SL +G
Sbjct: 320 SEVLRLAQEPVSLHAPVG 337
>gi|133468|sp|P27785.1|RPOD_STRAU RecName: Full=RNA polymerase sigma factor RpoD
Length = 317
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 82/198 (41%), Positives = 119/198 (60%), Gaps = 13/198 (6%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE+ L+ ++ L E E+ GG+ A +L R + G +
Sbjct: 33 LLTAAEEVDLARRVEAGLFAE-------EKLGGAADLDSQLAV------DLDRLVVMGRM 79
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++I SN+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G+KFSTYA WW
Sbjct: 80 AKRRLIESNLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWW 139
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++L+DQ+RTIR+P H+VE RV ++++ E G P EEVA L+ +R+
Sbjct: 140 IRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTAEEVAVHLELTPERV 199
Query: 406 HAVLLSPKAPRSLDQKIG 423
VL + P SL +G
Sbjct: 200 LEVLRLAQEPVSLHAPVG 217
>gi|359767854|ref|ZP_09271636.1| RNA polymerase sigma factor SigB [Gordonia polyisoprenivorans NBRC
16320]
gi|359314770|dbj|GAB24469.1| RNA polymerase sigma factor SigB [Gordonia polyisoprenivorans NBRC
16320]
Length = 339
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 140/242 (57%), Gaps = 24/242 (9%)
Query: 202 RPSVQEVDY------SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGL--REVLS 253
RP++ E D +D +R + LL A +E++L+ I+ GL + VL+
Sbjct: 25 RPAMTEQDLDAQSPAADLVRVYLNGIGRTALLNAEQEVELAKQIE-----AGLYAKHVLA 79
Query: 254 ERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQ 313
R + +AA +R+L + G + ++ +N+RLV+S+AK Y G GM L
Sbjct: 80 TR-------KRLSAAK---KRDLNTVVREGEAARAHLLEANLRLVVSLAKRYTGRGMPLL 129
Query: 314 DLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYR 373
DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLP H+VE +
Sbjct: 130 DLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNK 189
Query: 374 VKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVC 433
+ +++L+ + GR ++E+A +G+ +++ +L + P SLD +G ++ P
Sbjct: 190 IARIKRELHQQLGREATDDELANESGIPAEKIADLLDHSRDPVSLDMPVGSDEE-APLGD 248
Query: 434 FI 435
FI
Sbjct: 249 FI 250
>gi|260588574|ref|ZP_05854487.1| RNA polymerase sigma factor RpoD [Blautia hansenii DSM 20583]
gi|260541049|gb|EEX21618.1| RNA polymerase sigma factor RpoD [Blautia hansenii DSM 20583]
Length = 330
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 66/138 (47%), Positives = 95/138 (68%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KG+KFSTYA WW
Sbjct: 93 AKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYKFSTYATWW 152
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +QL E GR P+ EE+AE +S++R+
Sbjct: 153 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPHPEEIAEEMNMSVERV 212
Query: 406 HAVLLSPKAPRSLDQKIG 423
+L + P SL+ IG
Sbjct: 213 REILKISQEPVSLETPIG 230
>gi|376287924|ref|YP_005160490.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae BH8]
gi|371585258|gb|AEX48923.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae BH8]
Length = 526
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 119/198 (60%), Gaps = 3/198 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A +E+ L+ I+ L E + E A+ A +R+LR G
Sbjct: 232 LLNAEQEVSLAKRIEAGLYATYRMEQMEEAFNNGDKEAKLTPAV---KRDLRAIARDGRK 288
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 289 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 348
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P +E+A+ ++ +++
Sbjct: 349 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITEEKV 408
Query: 406 HAVLLSPKAPRSLDQKIG 423
+ + P SLDQ IG
Sbjct: 409 LGIQQYAREPISLDQTIG 426
>gi|196229539|ref|ZP_03128404.1| RNA polymerase, sigma 70 subunit, RpoD family [Chthoniobacter
flavus Ellin428]
gi|196226771|gb|EDY21276.1| RNA polymerase, sigma 70 subunit, RpoD family [Chthoniobacter
flavus Ellin428]
Length = 671
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 68/150 (45%), Positives = 101/150 (67%)
Query: 274 RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 333
+EL+ L + K +M+ +N+RLVISIAK Y G++ DL+QEG GL++ EKF+
Sbjct: 418 KELKVWLKKALKAKTEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYR 477
Query: 334 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEE 393
+G+KFSTYA WWI+QA+ +S++DQ+RTIR+P HM+E ++ +KQL + GR P EE
Sbjct: 478 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLMRVQKQLVQDYGREPTPEE 537
Query: 394 VAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
VA+ L ++R+ AVL + P SL +G
Sbjct: 538 VADEIQLPVERVRAVLKMAQQPISLQSPVG 567
>gi|429197710|ref|ZP_19189588.1| putative RNA polymerase sigma factor RpoD [Streptomyces ipomoeae
91-03]
gi|428666600|gb|EKX65745.1| putative RNA polymerase sigma factor RpoD [Streptomyces ipomoeae
91-03]
Length = 429
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 118/198 (59%), Gaps = 13/198 (6%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE++L+ ++ L E E+ +P A +L R + G +
Sbjct: 145 LLTAAEEVELARRVEAGLFAE-------EKLSNTPDLDSELAL------DLDRLVVMGRM 191
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 345
K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G+KFSTYA WW
Sbjct: 192 AKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWW 251
Query: 346 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405
I+QA+ ++L+DQ+RTIR+P H+VE RV ++++ E G P EEVA L +R+
Sbjct: 252 IRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGHEPTPEEVAAHLDLLPERV 311
Query: 406 HAVLLSPKAPRSLDQKIG 423
VL + P SL +G
Sbjct: 312 SEVLRLAQEPVSLHAPVG 329
>gi|428311648|ref|YP_007122625.1| RNA polymerase, sigma subunit, RpsC/SigC [Microcoleus sp. PCC 7113]
gi|428253260|gb|AFZ19219.1| RNA polymerase, sigma subunit, RpsC/SigC [Microcoleus sp. PCC 7113]
Length = 417
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 110/164 (67%), Gaps = 2/164 (1%)
Query: 264 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 323
+WA AG+ +EL + + G K+ MI +N+RLV+S+AK YQ G+ L DL+QEG GL
Sbjct: 156 RWAELAGLSVKELEQIQSQGNRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGL 215
Query: 324 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYS 383
R EKFD +KG++FSTYA+WWI+Q + ++++ QSRTIRLP H+ E ++K+A++++
Sbjct: 216 ERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQ 275
Query: 384 ENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427
E GR E++A ++ +++ VLL + PRS+ +I + +
Sbjct: 276 EKGRTATIEDIALELEMTKEQVREVLL--RVPRSVSLEIKVGKE 317
>gi|390937151|ref|YP_006394710.1| RNA polymerase principal sigma factor [Bifidobacterium bifidum
BGN4]
gi|389890764|gb|AFL04831.1| RNA polymerase principal sigma factor [Bifidobacterium bifidum
BGN4]
Length = 500
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 127/217 (58%), Gaps = 20/217 (9%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP++ YL+ S LL A +E+ LS I+ L + L + S+
Sbjct: 199 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESD--------------- 242
Query: 270 GVD---QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 326
G+D +REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R
Sbjct: 243 GMDFKRKRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRA 302
Query: 327 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG 386
EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ ++Q+ + G
Sbjct: 303 VEKFDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPVHMVEVINKLSRVQRQMLQDLG 362
Query: 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
R P +E+A + ++++ V + P SL +G
Sbjct: 363 REPTPDELARELDMPVEKVQEVQKYGREPISLHTPLG 399
>gi|2780746|dbj|BAA24364.1| plastid RNA polymerase sigma factor [Oryza sativa Japonica Group]
Length = 519
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 123/206 (59%), Gaps = 2/206 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR T S LLT + + LS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 207 YLRGTVSKE-LLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPPE 265
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 335
LR R++ L ++ + SN+RLVISIA+ Y G+ L DL+Q G GL+RG EKFDAS+G
Sbjct: 266 LRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRG 325
Query: 336 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVA 395
F+ STY +WWI+Q V ++L++ S+T RLP ++ E ++ A+ +L + G P E +A
Sbjct: 326 FRISTYVYWWIRQGVSRALAENSKTFRLPTYLHERLIAIRGAKYEL-EDQGIAPTIENIA 384
Query: 396 EATGLSMKRLHAVLLSPKAPRSLDQK 421
+ +S K++ + SLDQ+
Sbjct: 385 GSLNISEKKVLNATEAVNKVLSLDQQ 410
>gi|427727607|ref|YP_007073844.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427363526|gb|AFY46247.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 416
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 132/237 (55%), Gaps = 31/237 (13%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 274
RYLR T + A Q A L L ++E L+ G P+ +WA AGV
Sbjct: 89 RYLRLRT-----VLAGAAKQGDAVATPYLHLIEVQERLASELGHRPSLERWANTAGVQVS 143
Query: 275 ELRRRLN----------------------YGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
+L+ L+ G+ K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 144 DLKPILSEGKRRWAEIAKMTVEELEQIQSNGLQAKEHMIKANLRLVVSVAKKYQNRGLEL 203
Query: 313 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY 372
DLVQEG GL R EKFD +KG++FSTYA+WWI+Q + ++++ SRTIRLP H+ E
Sbjct: 204 LDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLN 263
Query: 373 RVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR--SLDQKIGINQN 427
++K+A++++ E GR P E++A ++ ++ VLL + PR SL+ K+G +++
Sbjct: 264 KIKKAQRKIAQEKGRTPTLEDLAIELEMTPSQVREVLL--RVPRSVSLETKVGKDKD 318
>gi|383831189|ref|ZP_09986278.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
xinjiangensis XJ-54]
gi|383463842|gb|EID55932.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
xinjiangensis XJ-54]
Length = 343
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/225 (38%), Positives = 124/225 (55%), Gaps = 25/225 (11%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QR 274
YL ++ LLTA+EE+ L+ I+ + FAQ D R
Sbjct: 50 YLNGIGKTA-LLTADEEVDLAKRIE------------------AGVFAQHMLDTSDDLPR 90
Query: 275 ELRRRL----NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
E R L G K ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKF
Sbjct: 91 ERRAELAAVVRDGERAKTHLLQANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKF 150
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KGFKFSTYA WWI+QA+ + ++DQ RTIRLP H+VE ++ ++ L+ GR
Sbjct: 151 DYAKGFKFSTYATWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQRLGREAT 210
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFI 435
NEE+A +G+ ++ ++L + P SLD +G ++ P FI
Sbjct: 211 NEELAAESGIPETKVASLLDHARDPVSLDMPVGTEED-APLGDFI 254
>gi|384566576|ref|ZP_10013680.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
glauca K62]
gi|384522430|gb|EIE99625.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
glauca K62]
Length = 439
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 102/153 (66%), Gaps = 4/153 (2%)
Query: 275 ELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 330
++RR L + G K ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 187 QMRRDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 246
Query: 331 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPN 390
D +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+P HMVE ++ +++L + GR P
Sbjct: 247 DYTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPT 306
Query: 391 NEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIG 423
EE+A+ +S +++ + + P SLDQ IG
Sbjct: 307 PEELAKEMDISPEKVLEIQQYAREPISLDQTIG 339
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.127 0.352
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,335,500,154
Number of Sequences: 23463169
Number of extensions: 237616570
Number of successful extensions: 991034
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 10897
Number of HSP's successfully gapped in prelim test: 1857
Number of HSP's that attempted gapping in prelim test: 973815
Number of HSP's gapped (non-prelim): 16454
length of query: 460
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 314
effective length of database: 8,933,572,693
effective search space: 2805141825602
effective search space used: 2805141825602
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 79 (35.0 bits)