Query 012567
Match_columns 460
No_of_seqs 360 out of 2143
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 11:57:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012567.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012567hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ugo_A RNA polymerase sigma fa 100.0 5.4E-38 1.9E-42 306.2 15.1 208 210-418 5-245 (245)
2 1l9z_H Sigma factor SIGA; heli 100.0 8.2E-37 2.8E-41 319.8 24.5 228 210-438 92-352 (438)
3 2a6h_F RNA polymerase sigma fa 100.0 3.8E-37 1.3E-41 321.6 18.8 229 210-439 77-338 (423)
4 3iyd_F RNA polymerase sigma fa 99.9 5.1E-26 1.7E-30 247.5 2.8 169 272-440 357-529 (613)
5 1l0o_C Sigma factor; bergerat 99.8 2.5E-19 8.6E-24 168.3 4.9 152 272-424 14-166 (243)
6 1rp3_A RNA polymerase sigma fa 99.7 2.1E-16 7.1E-21 148.5 15.7 137 284-423 11-152 (239)
7 1sig_A Sigma70, RNA polymerase 99.6 3.4E-16 1.2E-20 158.2 10.4 85 274-358 250-338 (339)
8 1or7_A Sigma-24, RNA polymeras 99.6 1.8E-15 6.1E-20 138.4 10.4 139 273-414 10-182 (194)
9 2q1z_A RPOE, ECF SIGE; ECF sig 99.6 2.7E-16 9.4E-21 142.9 2.5 143 271-414 11-177 (184)
10 3mzy_A RNA polymerase sigma-H 99.4 3.7E-13 1.3E-17 118.8 7.5 105 309-414 1-150 (164)
11 2lfw_A PHYR sigma-like domain; 99.3 2.8E-14 9.7E-19 128.3 -8.2 126 287-415 3-136 (157)
12 3n0r_A Response regulator; sig 99.2 3.3E-12 1.1E-16 126.0 2.7 125 284-413 20-152 (286)
13 2o7g_A Probable RNA polymerase 99.0 4.3E-10 1.5E-14 94.9 8.2 83 275-360 13-96 (112)
14 1h3l_A RNA polymerase sigma fa 98.9 6.5E-10 2.2E-14 89.6 5.4 74 284-359 11-84 (87)
15 3clo_A Transcriptional regulat 97.1 1.5E-07 5.2E-12 91.0 -18.6 139 276-416 87-240 (258)
16 3iyd_F RNA polymerase sigma fa 96.6 0.00054 1.9E-08 74.4 1.6 33 209-242 93-126 (613)
17 1l9z_H Sigma factor SIGA; heli 92.5 0.82 2.8E-05 47.7 11.8 30 387-416 394-423 (438)
18 3hug_A RNA polymerase sigma fa 92.2 0.067 2.3E-06 43.1 2.5 30 385-414 50-79 (92)
19 1rp3_A RNA polymerase sigma fa 91.7 3 0.0001 37.8 13.6 31 384-414 199-229 (239)
20 1l0o_C Sigma factor; bergerat 90.8 0.11 3.9E-06 47.5 2.7 45 371-415 189-241 (243)
21 3t72_q RNA polymerase sigma fa 89.7 0.3 1E-05 40.6 4.1 29 387-415 38-66 (99)
22 2p7v_B Sigma-70, RNA polymeras 87.8 0.4 1.4E-05 36.1 3.4 30 386-415 23-52 (68)
23 1x3u_A Transcriptional regulat 86.5 0.99 3.4E-05 34.5 5.1 37 380-416 23-59 (79)
24 1ku3_A Sigma factor SIGA; heli 86.0 0.91 3.1E-05 34.6 4.6 28 387-414 29-56 (73)
25 1tty_A Sigma-A, RNA polymerase 85.8 0.88 3E-05 36.1 4.6 28 387-414 37-64 (87)
26 1tc3_C Protein (TC3 transposas 84.7 1.8 6.3E-05 29.1 5.3 27 387-413 20-46 (51)
27 2o8x_A Probable RNA polymerase 84.2 1.2 4E-05 33.1 4.4 30 385-414 28-57 (70)
28 1xsv_A Hypothetical UPF0122 pr 84.0 0.47 1.6E-05 40.0 2.3 31 385-415 38-68 (113)
29 1je8_A Nitrate/nitrite respons 82.6 0.23 7.9E-06 39.2 -0.2 31 385-415 33-63 (82)
30 2jt1_A PEFI protein; solution 81.8 2.3 7.8E-05 33.7 5.4 37 374-410 9-46 (77)
31 2x48_A CAG38821; archeal virus 81.7 2.2 7.6E-05 30.3 4.9 25 387-411 30-54 (55)
32 3c57_A Two component transcrip 80.0 0.73 2.5E-05 37.3 1.9 30 386-415 40-69 (95)
33 2jpc_A SSRB; DNA binding prote 79.8 1.1 3.7E-05 32.6 2.7 31 385-415 10-40 (61)
34 2a6h_F RNA polymerase sigma fa 79.7 2.4 8.3E-05 43.7 6.2 29 387-415 379-407 (423)
35 1fse_A GERE; helix-turn-helix 74.8 3.5 0.00012 30.7 4.4 29 386-414 24-52 (74)
36 2rnj_A Response regulator prot 74.2 0.88 3E-05 36.3 0.8 31 386-416 42-72 (91)
37 3ulq_B Transcriptional regulat 72.9 4.3 0.00015 32.6 4.7 29 387-415 43-71 (90)
38 1s7o_A Hypothetical UPF0122 pr 72.0 2.5 8.6E-05 35.6 3.2 29 386-414 36-64 (113)
39 3k2z_A LEXA repressor; winged 70.5 7.9 0.00027 35.1 6.5 40 371-410 7-46 (196)
40 1p4w_A RCSB; solution structur 66.7 3.6 0.00012 33.8 3.0 30 387-416 48-77 (99)
41 3mn2_A Probable ARAC family tr 63.0 15 0.00051 29.5 6.1 37 374-410 4-40 (108)
42 1sig_A Sigma70, RNA polymerase 62.6 4.8 0.00016 39.8 3.6 17 226-242 1-17 (339)
43 2k9s_A Arabinose operon regula 58.9 17 0.00058 29.2 5.7 38 373-410 4-42 (107)
44 1zx4_A P1 PARB, plasmid partit 58.5 6.7 0.00023 36.3 3.5 33 386-418 22-54 (192)
45 1jko_C HIN recombinase, DNA-in 57.8 8.3 0.00028 26.1 3.2 25 388-412 21-45 (52)
46 3oou_A LIN2118 protein; protei 57.8 19 0.00065 28.9 5.9 37 374-410 7-43 (108)
47 3oio_A Transcriptional regulat 56.1 15 0.00052 29.8 5.0 38 373-410 8-45 (113)
48 3lsg_A Two-component response 55.4 25 0.00086 27.9 6.2 35 376-410 6-41 (103)
49 2heo_A Z-DNA binding protein 1 54.8 17 0.00057 27.3 4.7 26 385-410 22-47 (67)
50 1l3l_A Transcriptional activat 54.5 11 0.00039 34.7 4.4 30 386-415 186-215 (234)
51 3kz3_A Repressor protein CI; f 53.2 27 0.00093 26.3 5.8 24 387-410 24-47 (80)
52 1qbj_A Protein (double-strande 52.8 26 0.00087 27.7 5.6 26 386-411 25-50 (81)
53 2jt1_A PEFI protein; solution 51.0 19 0.00065 28.2 4.6 30 248-277 13-42 (77)
54 2q0o_A Probable transcriptiona 50.6 11 0.00039 34.8 3.8 30 386-415 188-217 (236)
55 1jhf_A LEXA repressor; LEXA SO 50.5 30 0.001 31.0 6.5 37 374-410 11-48 (202)
56 3szt_A QCSR, quorum-sensing co 50.5 7.4 0.00025 36.3 2.4 30 386-415 188-217 (237)
57 1zug_A Phage 434 CRO protein; 49.6 12 0.00041 27.1 3.1 25 387-411 15-39 (71)
58 1uxc_A FRUR (1-57), fructose r 48.5 15 0.0005 27.8 3.4 24 389-412 1-24 (65)
59 1jhg_A Trp operon repressor; c 46.9 21 0.00071 29.7 4.4 22 387-408 57-78 (101)
60 1qgp_A Protein (double strande 45.7 25 0.00085 27.3 4.5 25 387-411 30-54 (77)
61 3mkl_A HTH-type transcriptiona 45.2 27 0.00092 28.6 4.9 38 374-411 9-46 (120)
62 1lmb_3 Protein (lambda repress 45.1 51 0.0018 25.1 6.3 40 370-411 14-53 (92)
63 3bd1_A CRO protein; transcript 44.4 18 0.00062 27.3 3.5 22 390-411 13-34 (79)
64 1oyi_A Double-stranded RNA-bin 44.0 19 0.00066 28.8 3.6 22 389-410 31-52 (82)
65 1y7y_A C.AHDI; helix-turn-heli 43.7 59 0.002 23.4 6.2 24 387-410 25-48 (74)
66 3qp6_A CVIR transcriptional re 43.6 7.2 0.00025 37.2 1.2 29 387-415 211-239 (265)
67 3bpv_A Transcriptional regulat 42.4 91 0.0031 25.2 7.9 24 387-410 42-65 (138)
68 1r69_A Repressor protein CI; g 41.1 16 0.00055 26.2 2.6 25 387-411 13-37 (69)
69 1sfu_A 34L protein; protein/Z- 41.0 20 0.00068 28.3 3.1 41 369-411 12-52 (75)
70 3f6w_A XRE-family like protein 40.9 63 0.0021 24.1 6.1 24 387-410 26-49 (83)
71 2w7n_A TRFB transcriptional re 40.6 14 0.00048 30.7 2.4 31 385-415 31-61 (101)
72 2b5a_A C.BCLI; helix-turn-heli 40.5 69 0.0024 23.2 6.2 24 387-410 22-45 (77)
73 1bl0_A Protein (multiple antib 40.4 30 0.001 28.8 4.5 38 373-410 12-49 (129)
74 3nrv_A Putative transcriptiona 39.6 66 0.0023 26.5 6.6 64 338-410 12-76 (148)
75 3s8q_A R-M controller protein; 39.2 74 0.0025 23.7 6.3 32 387-419 23-54 (82)
76 2a6c_A Helix-turn-helix motif; 39.1 73 0.0025 24.1 6.3 25 387-411 30-54 (83)
77 3qkx_A Uncharacterized HTH-typ 39.0 56 0.0019 27.3 6.1 39 369-407 8-47 (188)
78 1neq_A DNA-binding protein NER 38.2 8.5 0.00029 29.8 0.6 49 386-436 20-68 (74)
79 1jgs_A Multiple antibiotic res 37.7 91 0.0031 25.2 7.1 63 339-410 8-70 (138)
80 2xi8_A Putative transcription 37.6 29 0.001 24.4 3.5 24 387-410 13-36 (66)
81 2htj_A P fimbrial regulatory p 37.5 45 0.0015 25.4 4.8 24 387-410 13-36 (81)
82 3fm5_A Transcriptional regulat 36.9 69 0.0024 26.6 6.3 25 386-410 52-76 (150)
83 3eco_A MEPR; mutlidrug efflux 36.4 65 0.0022 26.2 6.0 24 387-410 46-69 (139)
84 3b81_A Transcriptional regulat 36.2 62 0.0021 27.5 6.1 38 369-406 11-49 (203)
85 3klo_A Transcriptional regulat 36.0 45 0.0015 29.7 5.3 36 384-419 170-205 (225)
86 2vt3_A REX, redox-sensing tran 35.8 44 0.0015 31.0 5.3 51 362-412 7-57 (215)
87 2kpj_A SOS-response transcript 35.6 35 0.0012 26.5 4.0 26 386-411 20-45 (94)
88 2ewt_A BLDD, putative DNA-bind 35.1 1.1E+02 0.0039 21.7 6.6 24 387-410 20-45 (71)
89 3b7h_A Prophage LP1 protein 11 35.1 87 0.003 22.8 6.0 33 387-419 19-51 (78)
90 2fa5_A Transcriptional regulat 35.1 91 0.0031 26.1 6.9 24 387-410 62-85 (162)
91 3bro_A Transcriptional regulat 34.8 86 0.003 25.4 6.5 24 387-410 49-72 (141)
92 3g5g_A Regulatory protein; tra 34.7 87 0.003 24.9 6.3 32 387-419 40-71 (99)
93 2dt5_A AT-rich DNA-binding pro 34.3 49 0.0017 30.6 5.3 50 363-412 3-52 (211)
94 2nnn_A Probable transcriptiona 34.0 1.4E+02 0.0048 23.9 7.7 23 388-410 52-74 (140)
95 2fq4_A Transcriptional regulat 33.9 64 0.0022 27.6 5.8 39 369-407 12-51 (192)
96 2qwt_A Transcriptional regulat 33.8 67 0.0023 27.6 5.9 38 370-407 14-51 (196)
97 2fmy_A COOA, carbon monoxide o 33.7 1.5E+02 0.005 26.0 8.3 40 372-411 141-190 (220)
98 2ef8_A C.ECOT38IS, putative tr 33.6 1E+02 0.0035 22.7 6.3 24 387-410 22-45 (84)
99 1y6u_A XIS, excisionase from t 33.6 27 0.00092 26.9 2.8 25 387-411 15-39 (70)
100 1xn7_A Hypothetical protein YH 33.4 62 0.0021 25.3 5.0 25 386-410 14-38 (78)
101 2l0k_A Stage III sporulation p 33.4 52 0.0018 26.7 4.7 23 389-411 21-43 (93)
102 2wus_R RODZ, putative uncharac 33.4 74 0.0025 26.2 5.8 26 386-411 18-43 (112)
103 3qq6_A HTH-type transcriptiona 33.3 43 0.0015 25.2 4.0 33 387-419 22-54 (78)
104 3qbm_A TETR transcriptional re 32.9 74 0.0025 26.8 5.9 38 368-405 6-44 (199)
105 1gdt_A GD resolvase, protein ( 32.7 2.5E+02 0.0084 24.5 9.6 25 387-411 157-181 (183)
106 3anp_C Transcriptional repress 32.7 71 0.0024 27.5 5.9 39 370-408 10-49 (204)
107 3oop_A LIN2960 protein; protei 32.7 1.1E+02 0.0038 25.0 6.9 24 387-410 50-73 (143)
108 2f07_A YVDT; helix-turn-helix, 32.7 50 0.0017 28.5 4.9 39 370-408 11-50 (197)
109 2wiu_B HTH-type transcriptiona 32.0 1E+02 0.0035 23.0 6.1 24 387-410 24-47 (88)
110 2eh3_A Transcriptional regulat 31.8 62 0.0021 27.2 5.3 36 372-407 5-41 (179)
111 3lwj_A Putative TETR-family tr 31.8 77 0.0026 26.9 5.9 40 368-407 11-51 (202)
112 2q24_A Putative TETR family tr 31.8 62 0.0021 27.6 5.3 37 371-407 17-53 (194)
113 3mkl_A HTH-type transcriptiona 31.8 74 0.0025 25.9 5.5 56 299-355 13-68 (120)
114 2fbh_A Transcriptional regulat 31.4 1.5E+02 0.005 24.0 7.4 25 386-410 50-74 (146)
115 3lhq_A Acrab operon repressor 31.3 79 0.0027 26.9 5.9 39 370-408 15-54 (220)
116 3dv8_A Transcriptional regulat 31.3 1.3E+02 0.0045 26.1 7.6 24 388-411 169-192 (220)
117 2g7s_A Transcriptional regulat 31.3 63 0.0021 27.0 5.2 38 370-407 9-47 (194)
118 3rd3_A Probable transcriptiona 31.1 59 0.002 27.4 5.0 44 362-405 3-47 (197)
119 2ofy_A Putative XRE-family tra 31.1 82 0.0028 23.6 5.3 48 390-437 29-78 (86)
120 3vp5_A Transcriptional regulat 31.1 75 0.0026 27.2 5.8 38 370-407 13-51 (189)
121 1q1h_A TFE, transcription fact 31.0 32 0.0011 27.6 3.1 27 385-411 30-56 (110)
122 3col_A Putative transcription 31.0 47 0.0016 27.9 4.3 36 371-406 12-48 (196)
123 1pb6_A Hypothetical transcript 31.0 83 0.0028 26.8 6.0 41 368-408 17-58 (212)
124 3bs3_A Putative DNA-binding pr 30.9 43 0.0015 24.4 3.5 24 387-410 22-45 (76)
125 3knw_A Putative transcriptiona 30.9 2.2E+02 0.0074 24.1 8.8 71 256-326 30-101 (212)
126 3kz9_A SMCR; transcriptional r 30.8 75 0.0026 26.8 5.7 37 369-405 17-54 (206)
127 3vpr_A Transcriptional regulat 30.8 66 0.0022 27.3 5.3 37 372-408 6-43 (190)
128 1xmk_A Double-stranded RNA-spe 30.8 58 0.002 25.7 4.4 23 388-410 25-48 (79)
129 3knw_A Putative transcriptiona 30.8 82 0.0028 26.9 5.9 40 369-408 14-54 (212)
130 3kkc_A TETR family transcripti 30.7 55 0.0019 27.2 4.7 37 370-406 13-50 (177)
131 2pex_A Transcriptional regulat 30.7 1.2E+02 0.0042 25.0 6.9 24 387-410 60-83 (153)
132 3tqn_A Transcriptional regulat 30.7 37 0.0013 27.8 3.5 22 389-410 34-55 (113)
133 3keo_A Redox-sensing transcrip 30.6 51 0.0017 30.7 4.7 50 362-411 6-55 (212)
134 3deu_A Transcriptional regulat 30.5 96 0.0033 26.6 6.3 25 386-410 66-90 (166)
135 4ham_A LMO2241 protein; struct 30.5 37 0.0013 28.7 3.5 24 387-410 37-60 (134)
136 1d5y_A ROB transcription facto 30.4 93 0.0032 28.9 6.7 78 244-401 4-81 (292)
137 3on4_A Transcriptional regulat 30.4 48 0.0016 27.8 4.2 39 370-408 11-50 (191)
138 3bhq_A Transcriptional regulat 30.3 78 0.0027 27.4 5.8 39 370-408 13-52 (211)
139 2r1j_L Repressor protein C2; p 30.3 43 0.0015 23.7 3.4 23 388-410 18-40 (68)
140 1rkt_A Protein YFIR; transcrip 30.2 78 0.0027 27.3 5.7 37 370-406 13-50 (205)
141 3omt_A Uncharacterized protein 30.2 43 0.0015 24.5 3.5 24 387-410 20-43 (73)
142 2y75_A HTH-type transcriptiona 30.1 1E+02 0.0034 25.4 6.2 25 386-410 24-48 (129)
143 2l8n_A Transcriptional repress 30.0 28 0.00094 26.4 2.3 24 388-411 9-32 (67)
144 3gzi_A Transcriptional regulat 29.9 66 0.0022 27.7 5.2 41 368-408 16-57 (218)
145 2rdp_A Putative transcriptiona 29.9 1.4E+02 0.0047 24.5 7.1 23 388-410 56-78 (150)
146 3eus_A DNA-binding protein; st 29.7 1.2E+02 0.0043 22.9 6.3 24 387-410 26-49 (86)
147 2ibd_A Possible transcriptiona 29.7 82 0.0028 27.1 5.8 39 369-407 14-53 (204)
148 2zcm_A Biofilm operon icaabcd 29.6 72 0.0025 27.0 5.3 35 373-407 11-46 (192)
149 3f1b_A TETR-like transcription 29.5 90 0.0031 26.3 5.9 38 368-405 13-51 (203)
150 2ras_A Transcriptional regulat 29.5 85 0.0029 27.0 5.9 38 369-406 11-49 (212)
151 3cwr_A Transcriptional regulat 29.4 73 0.0025 27.0 5.3 41 368-408 16-57 (208)
152 4ghj_A Probable transcriptiona 29.3 1.2E+02 0.004 24.6 6.2 24 387-410 48-71 (101)
153 1j9i_A GPNU1 DBD;, terminase s 29.3 23 0.0008 26.3 1.8 24 389-412 3-26 (68)
154 2o7t_A Transcriptional regulat 29.3 73 0.0025 27.2 5.3 40 369-408 8-48 (199)
155 2g7g_A RHA04620, putative tran 29.2 64 0.0022 28.8 5.1 34 372-406 14-47 (213)
156 2wui_A MEXZ, transcriptional r 29.0 83 0.0028 27.3 5.7 38 370-407 12-50 (210)
157 2qtq_A Transcriptional regulat 29.0 71 0.0024 27.2 5.2 42 364-405 11-53 (213)
158 3vib_A MTRR; helix-turn-helix 29.0 88 0.003 27.0 5.9 38 370-407 11-49 (210)
159 2a61_A Transcriptional regulat 29.0 1.4E+02 0.0049 24.1 7.0 24 387-410 46-69 (145)
160 2o38_A Hypothetical protein; a 28.9 1.2E+02 0.0041 25.1 6.4 34 387-420 52-85 (120)
161 1lj9_A Transcriptional regulat 28.9 1.7E+02 0.0058 23.7 7.4 23 388-410 43-65 (144)
162 3ppb_A Putative TETR family tr 28.7 76 0.0026 26.5 5.3 34 372-405 12-46 (195)
163 3dcf_A Transcriptional regulat 28.6 90 0.0031 26.7 5.8 37 369-405 31-68 (218)
164 3dew_A Transcriptional regulat 28.5 61 0.0021 27.3 4.6 37 371-407 10-47 (206)
165 2nx4_A Transcriptional regulat 28.4 90 0.0031 26.7 5.8 38 370-407 11-49 (194)
166 3crj_A Transcription regulator 28.4 95 0.0032 26.8 6.0 38 369-406 14-52 (199)
167 2vn2_A DNAD, chromosome replic 28.2 34 0.0012 28.8 2.8 24 387-410 50-73 (128)
168 3kor_A Possible Trp repressor; 27.9 42 0.0014 28.7 3.3 24 387-410 74-97 (119)
169 2k9q_A Uncharacterized protein 27.9 48 0.0016 24.6 3.4 25 387-411 14-38 (77)
170 3egq_A TETR family transcripti 27.8 51 0.0017 27.4 3.9 39 370-408 5-44 (170)
171 1adr_A P22 C2 repressor; trans 27.7 49 0.0017 24.0 3.4 23 388-410 18-40 (76)
172 2rek_A Putative TETR-family tr 27.6 72 0.0025 27.2 5.0 38 370-407 17-54 (199)
173 2b0l_A GTP-sensing transcripti 27.3 39 0.0013 27.5 2.9 24 388-411 43-66 (102)
174 3cdl_A Transcriptional regulat 27.2 96 0.0033 26.7 5.8 36 371-406 11-47 (203)
175 3he0_A Transcriptional regulat 27.1 83 0.0028 26.5 5.2 35 372-406 14-49 (196)
176 3bni_A Putative TETR-family tr 26.9 1E+02 0.0034 27.3 5.9 39 369-407 43-82 (229)
177 2e1c_A Putative HTH-type trans 26.7 51 0.0017 29.1 3.9 24 387-410 40-63 (171)
178 2cfx_A HTH-type transcriptiona 26.6 1E+02 0.0035 25.9 5.7 25 387-411 18-42 (144)
179 3e6c_C CPRK, cyclic nucleotide 26.6 1.6E+02 0.0054 26.4 7.4 24 388-411 177-200 (250)
180 3t76_A VANU, transcriptional r 26.5 53 0.0018 25.9 3.5 32 387-420 36-67 (88)
181 3by6_A Predicted transcription 26.3 48 0.0017 27.8 3.5 24 388-411 35-58 (126)
182 2xdn_A HTH-type transcriptiona 26.3 77 0.0026 27.4 5.0 39 369-407 11-50 (210)
183 3neu_A LIN1836 protein; struct 26.3 49 0.0017 27.7 3.5 24 387-410 36-59 (125)
184 2fd5_A Transcriptional regulat 26.3 66 0.0023 27.0 4.4 36 370-405 8-44 (180)
185 2v57_A TETR family transcripti 26.0 78 0.0027 26.6 4.9 36 369-405 14-49 (190)
186 3mn2_A Probable ARAC family tr 26.0 95 0.0032 24.6 5.1 36 247-282 6-41 (108)
187 1zk8_A Transcriptional regulat 25.9 72 0.0025 26.7 4.6 35 372-406 11-46 (183)
188 3cjn_A Transcriptional regulat 25.9 1.2E+02 0.0042 25.2 6.1 24 387-410 65-88 (162)
189 3e97_A Transcriptional regulat 25.9 1E+02 0.0035 27.2 5.8 24 388-411 175-198 (231)
190 1z91_A Organic hydroperoxide r 25.8 75 0.0026 26.1 4.6 23 388-410 54-76 (147)
191 2zb9_A Putative transcriptiona 25.7 91 0.0031 26.9 5.3 39 369-407 23-62 (214)
192 1v4r_A Transcriptional repress 25.7 28 0.00095 27.8 1.7 26 388-413 35-60 (102)
193 1u78_A TC3 transposase, transp 25.7 87 0.003 25.6 5.0 26 387-412 21-46 (141)
194 2d6y_A Putative TETR family re 25.5 99 0.0034 26.7 5.6 38 371-408 10-48 (202)
195 2dg7_A Putative transcriptiona 25.3 76 0.0026 27.0 4.7 39 371-409 9-48 (195)
196 1pdn_C Protein (PRD paired); p 25.3 89 0.003 24.8 4.8 25 387-411 32-56 (128)
197 2zcx_A SCO7815, TETR-family tr 25.3 1.1E+02 0.0038 27.3 6.0 40 368-407 22-62 (231)
198 2gen_A Probable transcriptiona 25.2 94 0.0032 26.7 5.3 37 371-407 9-46 (197)
199 2rae_A Transcriptional regulat 25.1 92 0.0031 26.6 5.2 40 370-409 18-58 (207)
200 3f0c_A TETR-molecule A, transc 25.0 92 0.0032 26.7 5.2 34 372-405 14-48 (216)
201 2hku_A A putative transcriptio 24.8 92 0.0032 26.9 5.2 34 372-405 23-56 (215)
202 2ek5_A Predicted transcription 24.7 54 0.0019 27.7 3.5 25 387-411 27-51 (129)
203 3vk0_A NHTF, transcriptional r 24.7 1.2E+02 0.0041 24.4 5.5 32 387-419 33-64 (114)
204 2p5v_A Transcriptional regulat 24.4 1.1E+02 0.0039 26.1 5.7 24 388-411 24-47 (162)
205 3bja_A Transcriptional regulat 24.1 1E+02 0.0035 24.8 5.1 24 387-410 46-69 (139)
206 2dbb_A Putative HTH-type trans 24.1 1.2E+02 0.0042 25.5 5.7 25 387-411 22-46 (151)
207 2oi8_A Putative regulatory pro 24.1 1.4E+02 0.0047 26.4 6.3 39 368-406 15-54 (216)
208 2fjr_A Repressor protein CI; g 24.1 1.3E+02 0.0043 26.2 6.0 23 390-412 22-44 (189)
209 3e6m_A MARR family transcripti 24.0 1.1E+02 0.0039 25.7 5.5 23 388-410 67-89 (161)
210 4aik_A Transcriptional regulat 24.0 2.3E+02 0.0079 23.8 7.5 26 385-410 43-68 (151)
211 2g7h_A Methylated-DNA--protein 23.8 46 0.0016 30.1 2.9 64 346-411 51-119 (167)
212 2w53_A Repressor, SMet; antibi 23.8 98 0.0034 26.9 5.2 36 371-406 13-49 (219)
213 1ui5_A A-factor receptor homol 23.8 1E+02 0.0034 27.1 5.3 37 371-407 11-48 (215)
214 3oio_A Transcriptional regulat 23.7 1E+02 0.0035 24.6 4.9 37 246-282 10-46 (113)
215 2hr3_A Probable transcriptiona 23.6 1.9E+02 0.0065 23.5 6.8 25 386-410 48-72 (147)
216 1sgm_A Putative HTH-type trans 23.6 65 0.0022 27.0 3.8 34 372-405 9-43 (191)
217 2k02_A Ferrous iron transport 23.6 69 0.0024 25.7 3.7 24 387-410 15-38 (87)
218 3pas_A TETR family transcripti 23.6 55 0.0019 27.5 3.3 43 363-405 2-45 (195)
219 1vi0_A Transcriptional regulat 23.6 91 0.0031 27.0 4.9 37 371-407 10-47 (206)
220 3i4p_A Transcriptional regulat 23.5 94 0.0032 26.9 4.9 23 388-410 17-39 (162)
221 3c2b_A Transcriptional regulat 23.5 1E+02 0.0034 26.7 5.2 39 370-408 16-55 (221)
222 2p5k_A Arginine repressor; DNA 23.4 1.6E+02 0.0053 20.7 5.4 25 386-410 17-46 (64)
223 3lsg_A Two-component response 23.3 1.2E+02 0.004 23.7 5.1 35 248-282 7-42 (103)
224 2i10_A Putative TETR transcrip 23.3 1E+02 0.0036 26.6 5.2 37 372-408 14-51 (202)
225 1x57_A Endothelial differentia 23.1 71 0.0024 24.4 3.7 26 386-411 24-49 (91)
226 1yio_A Response regulatory pro 23.1 52 0.0018 28.6 3.2 30 386-415 155-184 (208)
227 3cjd_A Transcriptional regulat 23.1 1E+02 0.0036 26.5 5.2 39 369-407 12-51 (198)
228 2v79_A DNA replication protein 23.0 41 0.0014 28.9 2.4 34 387-420 50-85 (135)
229 1on2_A Transcriptional regulat 22.9 1.7E+02 0.0058 24.0 6.3 24 387-410 21-44 (142)
230 2hyt_A TETR-family transcripti 22.8 92 0.0031 26.7 4.8 39 370-408 13-52 (197)
231 1ku9_A Hypothetical protein MJ 22.7 98 0.0033 25.2 4.7 24 387-410 40-63 (152)
232 1wrj_A Methylated-DNA--protein 22.7 1.2E+02 0.004 27.0 5.4 63 347-411 46-111 (156)
233 2yve_A Transcriptional regulat 22.7 1.1E+02 0.0038 25.9 5.3 36 372-407 7-43 (185)
234 3gbg_A TCP pilus virulence reg 22.6 1.2E+02 0.004 28.0 5.7 37 374-410 171-207 (276)
235 3geu_A Intercellular adhesion 22.6 70 0.0024 27.0 3.9 35 372-406 6-41 (189)
236 3loc_A HTH-type transcriptiona 22.5 68 0.0023 27.3 3.8 40 369-408 18-58 (212)
237 2k9s_A Arabinose operon regula 22.4 1.2E+02 0.0042 23.9 5.1 37 246-282 6-43 (107)
238 1j5y_A Transcriptional regulat 22.3 1.6E+02 0.0053 26.1 6.3 25 386-410 34-58 (187)
239 3s2w_A Transcriptional regulat 22.3 2E+02 0.0068 24.0 6.7 64 338-410 23-86 (159)
240 3mvp_A TETR/ACRR transcription 22.2 1.1E+02 0.0039 25.9 5.3 41 368-408 25-66 (217)
241 2np5_A Transcriptional regulat 22.1 92 0.0032 26.9 4.6 36 372-407 12-48 (203)
242 3trb_A Virulence-associated pr 22.1 68 0.0023 26.0 3.5 33 386-419 25-57 (104)
243 2id3_A Putative transcriptiona 22.0 1.1E+02 0.0039 26.8 5.3 40 369-408 40-80 (225)
244 2hyj_A Putative TETR-family tr 21.9 1.1E+02 0.0038 26.3 5.2 37 370-406 13-50 (200)
245 2dg8_A Putative TETR-family tr 21.9 78 0.0027 27.0 4.1 37 371-407 11-48 (193)
246 2cw1_A SN4M; lambda CRO fold, 21.8 91 0.0031 23.5 3.8 24 390-413 15-38 (65)
247 3ccy_A Putative TETR-family tr 21.8 67 0.0023 27.6 3.6 36 370-405 15-51 (203)
248 2eth_A Transcriptional regulat 21.8 1.4E+02 0.0046 24.9 5.5 23 388-410 58-80 (154)
249 3f2g_A Alkylmercury lyase; MER 21.8 97 0.0033 29.2 4.8 29 385-413 33-61 (220)
250 3fmy_A HTH-type transcriptiona 21.8 52 0.0018 24.5 2.5 24 387-410 23-46 (73)
251 3on2_A Probable transcriptiona 21.6 51 0.0017 27.8 2.7 36 370-405 13-49 (199)
252 3eup_A Transcriptional regulat 21.6 74 0.0025 26.9 3.8 38 368-405 10-48 (204)
253 3oou_A LIN2118 protein; protei 21.6 1.3E+02 0.0043 23.8 5.0 35 248-282 10-44 (108)
254 2gau_A Transcriptional regulat 21.5 2.6E+02 0.0087 24.5 7.6 24 388-411 180-203 (232)
255 3b02_A Transcriptional regulat 21.5 1.1E+02 0.0037 26.4 4.9 24 388-411 139-162 (195)
256 3q0w_A HTH-type transcriptiona 21.4 1.2E+02 0.004 26.9 5.3 38 368-405 43-81 (236)
257 2pij_A Prophage PFL 6 CRO; tra 21.4 1.5E+02 0.005 21.1 4.9 22 390-411 15-36 (67)
258 2fbi_A Probable transcriptiona 21.3 1.3E+02 0.0043 24.3 5.1 23 388-410 50-72 (142)
259 3hsr_A HTH-type transcriptiona 21.3 86 0.0029 25.8 4.1 24 387-410 49-72 (140)
260 2d1h_A ST1889, 109AA long hypo 21.3 58 0.002 25.2 2.8 25 386-410 34-58 (109)
261 2cyy_A Putative HTH-type trans 21.2 1.5E+02 0.0051 25.0 5.7 24 387-410 20-43 (151)
262 2ia0_A Putative HTH-type trans 21.2 1.4E+02 0.0048 26.1 5.7 25 387-411 30-54 (171)
263 3tgn_A ADC operon repressor AD 21.2 32 0.0011 28.4 1.3 22 389-410 52-73 (146)
264 2of7_A Putative TETR-family tr 21.2 1.4E+02 0.0048 27.0 5.9 40 369-408 48-88 (260)
265 2jj7_A Hemolysin II regulatory 21.1 76 0.0026 26.7 3.8 39 370-408 8-47 (186)
266 2qib_A TETR-family transcripti 21.1 1.1E+02 0.0038 27.0 5.1 39 369-407 13-52 (231)
267 3rh2_A Hypothetical TETR-like 21.1 1E+02 0.0034 26.6 4.6 36 372-407 6-42 (212)
268 1ft9_A Carbon monoxide oxidati 21.1 1.5E+02 0.0051 26.0 5.9 23 388-410 163-185 (222)
269 1a04_A Nitrate/nitrite respons 21.0 1E+02 0.0034 26.9 4.7 30 386-415 167-196 (215)
270 3bjb_A Probable transcriptiona 20.9 1.2E+02 0.004 26.4 5.1 39 369-407 22-61 (207)
271 2fbq_A Probable transcriptiona 20.9 1.4E+02 0.0048 26.5 5.7 38 370-407 8-46 (235)
272 2lnb_A Z-DNA-binding protein 1 20.9 1.7E+02 0.0059 23.2 5.3 43 367-413 17-59 (80)
273 2kfs_A Conserved hypothetical 20.9 55 0.0019 29.0 2.8 26 387-412 30-55 (148)
274 1s3j_A YUSO protein; structura 20.8 1.4E+02 0.0049 24.5 5.4 23 388-410 51-73 (155)
275 2elh_A CG11849-PA, LD40883P; s 20.7 1E+02 0.0035 23.8 4.1 23 388-410 38-60 (87)
276 3c3w_A Two component transcrip 20.7 46 0.0016 29.7 2.4 30 387-416 163-192 (225)
277 2l1p_A DNA-binding protein SAT 20.7 1.2E+02 0.0042 24.3 4.5 23 388-410 32-54 (83)
278 2ppx_A AGR_C_3184P, uncharacte 20.6 80 0.0027 24.7 3.5 24 387-410 42-65 (99)
279 2ict_A Antitoxin HIGA; helix-t 20.5 84 0.0029 24.1 3.6 24 388-411 21-44 (94)
280 3f52_A CLP gene regulator (CLG 20.4 1.9E+02 0.0066 23.0 6.0 24 387-410 40-63 (117)
281 2cg4_A Regulatory protein ASNC 20.2 1.6E+02 0.0053 24.9 5.6 25 387-411 21-45 (152)
282 2oer_A Probable transcriptiona 20.2 98 0.0033 27.0 4.4 38 370-407 25-63 (214)
283 2iu5_A DHAS, YCEG, HTH-type dh 20.2 71 0.0024 27.3 3.4 36 370-405 14-50 (195)
284 1b0n_A Protein (SINR protein); 20.1 82 0.0028 24.7 3.5 25 387-411 13-37 (111)
285 3mky_B Protein SOPB; partition 20.0 82 0.0028 29.0 3.8 38 385-422 39-76 (189)
286 3d0s_A Transcriptional regulat 20.0 2E+02 0.0069 25.1 6.6 24 388-411 177-200 (227)
287 2fu4_A Ferric uptake regulatio 20.0 1.1E+02 0.0038 23.0 4.1 24 387-410 32-60 (83)
No 1
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=100.00 E-value=5.4e-38 Score=306.18 Aligned_cols=208 Identities=39% Similarity=0.658 Sum_probs=131.4
Q ss_pred CCCHHH-HHHHhhcCCCCCCHHHHHHHHHHHHHHHH-HHhHHHHHh-------h------------------hcCCCCcH
Q 012567 210 YSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLK-LEGLREVLS-------E------------------RCGGSPTF 262 (460)
Q Consensus 210 ~~d~l~-YL~~~~~~~~lLT~EEE~eL~~~Iq~~~~-le~~~~~L~-------~------------------~~g~~pt~ 262 (460)
++||++ ||++| |++||||++||++|+++|+.++. .+.+..... + ..+.+|+.
T Consensus 5 ~~d~~~~yl~~i-~~~~llt~~~e~~la~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~g~~~~~~~~~ 83 (245)
T 3ugo_A 5 TSDPVRQYLHEI-GQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKT 83 (245)
T ss_dssp CCHHHHHHHHHH-TTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHTTGGGCSCCCCTTCCCCCCHHH
T ss_pred CCCcHHHHHHHc-ccccCCCHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHhhhhhhhccchhcccccccccccchh
Confidence 479999 99999 99999999999999999999864 333322110 0 02578999
Q ss_pred HHHHHHhCCC----HHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHccCCCCCcccHHhHHHHHHHHHHhhcCCCCCCch
Q 012567 263 AQWAAAAGVD----QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKF 338 (460)
Q Consensus 263 ~ewA~a~g~d----e~~L~~~l~~G~~A~e~LI~~nlrLV~~IAkry~~~g~d~eDLiQEG~IGLirAiekFDp~kG~rF 338 (460)
.+||.+.+++ ...|...+++|..|++.|+..|+++|+++|++|.+++.+++||+||||+|||+++++|||.+|++|
T Consensus 84 ~~~~~~~~~~~~~~~~~L~~~~~~d~~A~~~L~~~y~~lV~~ia~r~~~~~~~aeDLvQegfi~L~~a~~~fd~~~g~~F 163 (245)
T 3ugo_A 84 VEEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKF 163 (245)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHGGGTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCH
T ss_pred HHHHHHhhccchHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCcccCCcH
Confidence 9999998875 345667788889999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHhhhcCcccccCcchHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhC--CCHHHHHHHHhCCCCCc
Q 012567 339 STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATG--LSMKRLHAVLLSPKAPR 416 (460)
Q Consensus 339 STYA~~wIr~aI~~~Lrk~~r~iriP~~~~e~i~kl~ka~~~L~~~~gr~pS~eEIAe~LG--IS~e~Vk~~l~~ar~~l 416 (460)
+||++||||++|.++++++.+.+++|.++.+.+.++.++.+.|...+++.||++|||+.|| ||+++|++.+.+++..+
T Consensus 164 ~tya~~~ir~~i~~~ir~~~r~~r~p~~l~e~i~~l~~~~~~L~~~~~~~ps~~EIAe~Lg~~is~~tVk~~l~~ar~~l 243 (245)
T 3ugo_A 164 STYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPV 243 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCCCHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999999999988
Q ss_pred cc
Q 012567 417 SL 418 (460)
Q Consensus 417 SL 418 (460)
||
T Consensus 244 sl 245 (245)
T 3ugo_A 244 SL 245 (245)
T ss_dssp --
T ss_pred CC
Confidence 86
No 2
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=100.00 E-value=8.2e-37 Score=319.75 Aligned_cols=228 Identities=36% Similarity=0.573 Sum_probs=203.1
Q ss_pred CCCHHH-HHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHhHHH------------------HHhhhcCCCCcHHHHHH---
Q 012567 210 YSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE------------------VLSERCGGSPTFAQWAA--- 267 (460)
Q Consensus 210 ~~d~l~-YL~~~~~~~~lLT~EEE~eL~~~Iq~~~~le~~~~------------------~L~~~~g~~pt~~ewA~--- 267 (460)
..|+++ ||++| +++||||+|||++|+++|+.+..++.... ......|+.|+..+|+.
T Consensus 92 ~~d~~~~Yl~ei-~~~pLLt~eEE~~La~~i~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (438)
T 1l9z_H 92 TSDPVRQYLHEI-GQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKT 170 (438)
T ss_pred CCChHHHHHHHh-ccCCCCCHHHHHHHHHHHHHhhhHHHHHHhhhccchhhhhhhhhhhhhhcccccccccccccccchh
Confidence 468999 99999 99999999999999999998754432211 11223567888888743
Q ss_pred ---------HhCCCHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHccCCCCCcccHHhHHHHHHHHHHhhcCCCCCCch
Q 012567 268 ---------AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKF 338 (460)
Q Consensus 268 ---------a~g~de~~L~~~l~~G~~A~e~LI~~nlrLV~~IAkry~~~g~d~eDLiQEG~IGLirAiekFDp~kG~rF 338 (460)
+.+++...|+..+++|..|+++||.+|+++|+++|++|.++|.+++|||||||+|||+++++|||.+|++|
T Consensus 171 ~~~~~~~~~~~~~~~~eLi~~~~~d~~A~~~Li~~nlrlVv~iA~ry~~~g~~aeDLIQEg~IgL~kAvekFDp~kG~rF 250 (438)
T 1l9z_H 171 VEEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKF 250 (438)
T ss_pred hhhhhhhhhcccchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCCCh
Confidence 23556678888888889999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHhhhcCcccccCcchHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhC--CCHHHHHHHHhCCCCCc
Q 012567 339 STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATG--LSMKRLHAVLLSPKAPR 416 (460)
Q Consensus 339 STYA~~wIr~aI~~~Lrk~~r~iriP~~~~e~i~kl~ka~~~L~~~~gr~pS~eEIAe~LG--IS~e~Vk~~l~~ar~~l 416 (460)
+||++|||||.|.++++++++.+++|.++.+.+++++++.+.+.+.+|+.|+.+|||+.+| +++++|..++..+...+
T Consensus 251 sTYA~~wIR~~I~~~i~~~~R~irlp~~~~~~l~~lrr~~r~l~~~lgr~pt~eeiA~~l~~~v~~e~V~~~~~~~~~~~ 330 (438)
T 1l9z_H 251 STYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPV 330 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhccchHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999999888899
Q ss_pred ccccccccCCCCCcccccccCC
Q 012567 417 SLDQKIGINQNLKPSVCFILNL 438 (460)
Q Consensus 417 SLD~~v~~e~d~tl~Eli~D~~ 438 (460)
|||.+++++++.++.|+++|+.
T Consensus 331 SLd~~~~~d~d~~l~d~l~d~~ 352 (438)
T 1l9z_H 331 SLETPIGDEKDSFYGDFIPDEN 352 (438)
T ss_pred ccccccccccchhhhhhhcccc
Confidence 9999998777778888888754
No 3
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=100.00 E-value=3.8e-37 Score=321.63 Aligned_cols=229 Identities=36% Similarity=0.568 Sum_probs=200.7
Q ss_pred CCCHHH-HHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHhHHHH------------------HhhhcCCCCcHHHHH----
Q 012567 210 YSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREV------------------LSERCGGSPTFAQWA---- 266 (460)
Q Consensus 210 ~~d~l~-YL~~~~~~~~lLT~EEE~eL~~~Iq~~~~le~~~~~------------------L~~~~g~~pt~~ewA---- 266 (460)
..||++ ||++| +++|+||+|||++|+++|+.+..+...... .....|+.|+..+|+
T Consensus 77 ~~d~~~~Yl~ei-~~~plLt~eEE~~La~ri~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (423)
T 2a6h_F 77 TSDPVRQYLHEI-GQVPLLTLEEEVELARKVEEGMEAIKKLSEITGLDPDLIREVVRAKILGSARVRHIPGLKETLDPKT 155 (423)
T ss_dssp THHHHHHHHHHH-HHCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHTTSCSSSCTTHH
T ss_pred CCcHHHHHHHHh-cccCCCCHHHHHHHHHHHHhchhHHHHHHHhhccchhhhhhhHhhhhhhhhhcccccchhhhhhhhh
Confidence 468999 99999 999999999999999999987543321111 111224566655433
Q ss_pred -----H---HhCCCHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHccCCCCCcccHHhHHHHHHHHHHhhcCCCCCCch
Q 012567 267 -----A---AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKF 338 (460)
Q Consensus 267 -----~---a~g~de~~L~~~l~~G~~A~e~LI~~nlrLV~~IAkry~~~g~d~eDLiQEG~IGLirAiekFDp~kG~rF 338 (460)
. +++++...|+..++.|..|+++||.+|+++|+++|++|.++|.+++||+||||+|||+++++|||.+|++|
T Consensus 156 ~~~~~~~~~~~~~~~~~L~~~~~~d~~A~~~Li~~~lrlV~~iA~~y~~~~~~~eDLiQEg~igL~kav~kFd~~~g~~F 235 (423)
T 2a6h_F 156 VEEIDQKLKSLPKEHKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKF 235 (423)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCTTTSCHHHHHHHHHHHHHHHHHHCCTTSCCCH
T ss_pred hhhhhhhhhcccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCCCH
Confidence 2 34667788888898889999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHhhhcCcccccCcchHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhC--CCHHHHHHHHhCCCCCc
Q 012567 339 STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATG--LSMKRLHAVLLSPKAPR 416 (460)
Q Consensus 339 STYA~~wIr~aI~~~Lrk~~r~iriP~~~~e~i~kl~ka~~~L~~~~gr~pS~eEIAe~LG--IS~e~Vk~~l~~ar~~l 416 (460)
+||++||||+.|.++++++++.+++|.++.+.+++++++.+.+.+.+|+.|+.+|||+.|| +++++|..++..+...+
T Consensus 236 stYa~~wIr~~i~~~i~~~~r~ir~p~~~~~~~~~lrr~~~~l~~~~~r~p~~~eiA~~l~~~~~~~~v~~~~~~~~~~~ 315 (423)
T 2a6h_F 236 STYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPTYEEIAEAMGPGWDAKRVEETLKIAQEPV 315 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHCTTCCHHHHHHHHHHHSCCE
T ss_pred HHHHHHHHHHHHHHHHHHccceeeccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHHHHHhccCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999998888899
Q ss_pred ccccccccCCCCCcccccccCCC
Q 012567 417 SLDQKIGINQNLKPSVCFILNLA 439 (460)
Q Consensus 417 SLD~~v~~e~d~tl~Eli~D~~~ 439 (460)
|||.+++++++.++.|+++|+..
T Consensus 316 Sld~~~~~~~~~~l~d~l~d~~~ 338 (423)
T 2a6h_F 316 SLETPIGDEKDSFYGDFIPDEHL 338 (423)
T ss_dssp ESSCBCSSSSSCBGGGSSCCSSS
T ss_pred ccccccCCCCccchhhhhccccC
Confidence 99999988777788999887643
No 4
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=99.91 E-value=5.1e-26 Score=247.46 Aligned_cols=169 Identities=38% Similarity=0.695 Sum_probs=158.4
Q ss_pred CHHHHHHHHhcc-HHH---HHHHHHHhHHHHHHHHHHccCCCCCcccHHhHHHHHHHHHHhhcCCCCCCchHhHHHHHHH
Q 012567 272 DQRELRRRLNYG-ILC---KDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIK 347 (460)
Q Consensus 272 de~~L~~~l~~G-~~A---~e~LI~~nlrLV~~IAkry~~~g~d~eDLiQEG~IGLirAiekFDp~kG~rFSTYA~~wIr 347 (460)
+...|+.+++.| ..| ++.|+..|+++|+++|++|.+++.+++||+||||+|||+++++|++.+|++|+||++||||
T Consensus 357 ~~~~Li~~~~~Gd~~A~~A~~~L~~~y~~~v~~ia~r~~~~~~~aeDlvQE~fi~l~~a~~~fd~~~g~~Fstyl~~~ir 436 (613)
T 3iyd_F 357 QVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIR 436 (613)
T ss_dssp THHHHHHTHHHHHHHHHHHHTTTTTTTTHHHHHGGGSSSTTSSCSTTTTHHHHHHHHHHTTSCCTTSSSCSTTTHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCccccCcHHHHHHHHHH
Confidence 356677788888 566 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCcccccCcchHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHhCCCCCcccccccccCCC
Q 012567 348 QAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQN 427 (460)
Q Consensus 348 ~aI~~~Lrk~~r~iriP~~~~e~i~kl~ka~~~L~~~~gr~pS~eEIAe~LGIS~e~Vk~~l~~ar~~lSLD~~v~~e~d 427 (460)
|.|.++++++.+.+++|.++.+.+++++++...+.+++|+.||.+|||+.||+++++|+.++..++.++||+.+++++++
T Consensus 437 n~i~~~lr~~~r~~rip~~~~~~~~k~~r~~~~l~~~~gr~pt~eela~~l~~~~~~v~~~~~~~~~~~sld~~~~~~~~ 516 (613)
T 3iyd_F 437 QAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDED 516 (613)
T ss_dssp HHHHHHTTTSCSSSCCCSHHHHTTTTTTTTTTTTTTTTCSCCCTTTTTTTSSCCSSHHHHHHHHSCCCCCSSCCCSSSSS
T ss_pred HHHHHHHHhcCcceeCcHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHhccCCcccCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCcccccccCCCc
Q 012567 428 LKPSVCFILNLAD 440 (460)
Q Consensus 428 ~tl~Eli~D~~~d 440 (460)
..+.++++|....
T Consensus 517 ~~l~d~i~d~~~~ 529 (613)
T 3iyd_F 517 SHLGDFIEDTTLE 529 (613)
T ss_dssp CCGGGSCCCSSSC
T ss_pred ccHHHHhcCCCCC
Confidence 8889998876543
No 5
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=99.76 E-value=2.5e-19 Score=168.29 Aligned_cols=152 Identities=30% Similarity=0.496 Sum_probs=51.6
Q ss_pred CHHHHHHHHhcc-HHHHHHHHHHhHHHHHHHHHHccCCCCCcccHHhHHHHHHHHHHhhcCCCCCCchHhHHHHHHHHHH
Q 012567 272 DQRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAV 350 (460)
Q Consensus 272 de~~L~~~l~~G-~~A~e~LI~~nlrLV~~IAkry~~~g~d~eDLiQEG~IGLirAiekFDp~kG~rFSTYA~~wIr~aI 350 (460)
+...|+..++.| ..|++.|+..|.++|+.+|++|.++..+++||+|||++++|+++++|++.+|..|.||+++|++|.+
T Consensus 14 ~~~~l~~~~~~gd~~a~~~l~~~~~~~v~~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~i~~~~~ 93 (243)
T 1l0o_C 14 EMKELIRRSQEGDQEARDEIIEKNMRLVWSVVQRFLNRGYEADDLFQIGCIGLLKSVDKFDLSYDVKFSTYAVPMIIGEI 93 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHH
Confidence 345567777777 8999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred HHHhhhcCcccccCcchHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHhCCCCCccccccccc
Q 012567 351 RKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGI 424 (460)
Q Consensus 351 ~~~Lrk~~r~iriP~~~~e~i~kl~ka~~~L~~~~gr~pS~eEIAe~LGIS~e~Vk~~l~~ar~~lSLD~~v~~ 424 (460)
++++|++. .+++|..+.....+++.+...+....++.++..++++.+|++.+.+...+.......|++.++.+
T Consensus 94 ~d~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 166 (243)
T 1l0o_C 94 QRFLRDDG-TVKVSRSLKEMGNKIRKAKDELSKTRGRAPTVTEIADHLGISPEDVVLAQEAVRLPTSIHETVYE 166 (243)
T ss_dssp ------CC-CCTTHHHHHHHHHHHHHHHHHHHHHHTSCCBHHHHHHHHTSCHHHHHHHHHHHHC----------
T ss_pred HHHHHhcC-CccCcHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHhccccCccccccc
Confidence 99999987 78899999999999999999999999999999999999999999998887665567888877644
No 6
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=99.70 E-value=2.1e-16 Score=148.52 Aligned_cols=137 Identities=25% Similarity=0.353 Sum_probs=121.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHcc---CCCCCcccHHhHHHHHHHHHHhhcCCCCCCchHhHHHHHHHHHHHHHhhhcCcc
Q 012567 284 ILCKDKMITSNIRLVISIAKNYQ---GAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 360 (460)
Q Consensus 284 ~~A~e~LI~~nlrLV~~IAkry~---~~g~d~eDLiQEG~IGLirAiekFDp~kG~rFSTYA~~wIr~aI~~~Lrk~~r~ 360 (460)
..+++.|+..|.++|+.+|++|. +++.+++||+|||+++||+++++|++.+|.+|.||+++|++|.|++++|++.+
T Consensus 11 ~~a~~~l~~~~~~~v~~~a~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~~~~~~~~d~~r~~~~- 89 (239)
T 1rp3_A 11 QIEREELILKYLPLVKAIATNIKKHLPEDVDIRDLISYGVIGLIKAVDNLSTENPKRAEAYIKLRIKGAIYDYLRSLDF- 89 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCHHHHHHHHHHHHHHHHHTCCCCCTHHHHHHHHHHHHHHHHHHHHTSST-
T ss_pred chHHHHHHHHhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHhcCc-
Confidence 45899999999999999999998 67899999999999999999999999998899999999999999999998764
Q ss_pred cccCcchHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHhCCC--CCcccccccc
Q 012567 361 IRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPK--APRSLDQKIG 423 (460)
Q Consensus 361 iriP~~~~e~i~kl~ka~~~L~~~~gr~pS~eEIAe~LGIS~e~Vk~~l~~ar--~~lSLD~~v~ 423 (460)
.|........++.++...+...+++.|+..++|+.+|++++++..++.... ...|++.++.
T Consensus 90 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~sl~~~~~ 152 (239)
T 1rp3_A 90 --GSRQVREKERRIKEVVEKLKEKLGREPTDEEVAKELGISTEELFKTLDKINFSYILSLEEVFR 152 (239)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --cchHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCcCHHHHHHHHHHhccCCCcccccccc
Confidence 677777788899999999999999999999999999999999988775331 2356776653
No 7
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=99.64 E-value=3.4e-16 Score=158.23 Aligned_cols=85 Identities=47% Similarity=0.942 Sum_probs=79.3
Q ss_pred HHHHHHHhcc-H---HHHHHHHHHhHHHHHHHHHHccCCCCCcccHHhHHHHHHHHHHhhcCCCCCCchHhHHHHHHHHH
Q 012567 274 RELRRRLNYG-I---LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQA 349 (460)
Q Consensus 274 ~~L~~~l~~G-~---~A~e~LI~~nlrLV~~IAkry~~~g~d~eDLiQEG~IGLirAiekFDp~kG~rFSTYA~~wIr~a 349 (460)
..|...++.| . .|++.|+..|+++|+++|++|.+++.+++||+||||+|||+++++|++.+|.+|+||++|||+|.
T Consensus 250 ~~l~~~~~~gd~~~~~A~~~L~~~~~~~v~~~a~~~~~~~~~aeDlvQe~~i~l~~a~~~f~~~~g~~f~twl~~iirn~ 329 (339)
T 1sig_A 250 KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQA 329 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTSTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHH
Confidence 4567777788 6 89999999999999999999999999999999999999999999999998999999999999999
Q ss_pred HHHHhhhcC
Q 012567 350 VRKSLSDQS 358 (460)
Q Consensus 350 I~~~Lrk~~ 358 (460)
|++++|++.
T Consensus 330 ~~~~lr~~~ 338 (339)
T 1sig_A 330 ITRSIADQA 338 (339)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHhc
Confidence 999999865
No 8
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=99.61 E-value=1.8e-15 Score=138.43 Aligned_cols=139 Identities=17% Similarity=0.175 Sum_probs=113.2
Q ss_pred HHHHHHHHhcc-HHHHHHHHHHhHHHHHHHHHHccCCCCCcccHHhHHHHHHHHHHhhcCCCCCCchHhHHHHHHHHHHH
Q 012567 273 QRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVR 351 (460)
Q Consensus 273 e~~L~~~l~~G-~~A~e~LI~~nlrLV~~IAkry~~~g~d~eDLiQEG~IGLirAiekFDp~kG~rFSTYA~~wIr~aI~ 351 (460)
+..|+..++.| ..|++.|+..|.+.|+.++++|.+ ..+++|++||+|+++|+++.+|++.. .|.+|++.+++|.++
T Consensus 10 ~~~l~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~~~-~~~aeDl~Qe~~l~~~~~~~~~~~~~--~~~~~l~~i~~n~~~ 86 (194)
T 1or7_A 10 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSFRGDS--AFYTWLYRIAVNTAK 86 (194)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTSC-GGGHHHHHHHHHHHHHHHGGGCCSSS--CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHcC-HHhHHHHHHHHHHHHHHhHHhcCCcc--chHHHHHHHHHHHHH
Confidence 45677777777 999999999999999999999999 99999999999999999999999864 599999999999999
Q ss_pred HHhhhcCccccc----------------------Ccc---hHHHHHHHHHHHHHHHHH--------hCCCCCHHHHHHHh
Q 012567 352 KSLSDQSRTIRL----------------------PFH---MVEATYRVKEARKQLYSE--------NGRHPNNEEVAEAT 398 (460)
Q Consensus 352 ~~Lrk~~r~iri----------------------P~~---~~e~i~kl~ka~~~L~~~--------~gr~pS~eEIAe~L 398 (460)
+++|++.+.... |.. ..+....+..++..|+.. +..+.|++|||+.|
T Consensus 87 d~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~l~~L~~~~r~vl~l~~~~g~s~~EIA~~l 166 (194)
T 1or7_A 87 NYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIM 166 (194)
T ss_dssp HHHHHHTTCCTHHHHHHHHHHSCCSSCC--------CEEEHHHHHHHHHHHHHHSCHHHHHHHHHHHTTCCCHHHHHHHT
T ss_pred HHHHHHhccCccccccccccccccccccccCCCChHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHcCCCHHHHHHHH
Confidence 999876543210 111 123334456666666553 34789999999999
Q ss_pred CCCHHHHHHHHhCCCC
Q 012567 399 GLSMKRLHAVLLSPKA 414 (460)
Q Consensus 399 GIS~e~Vk~~l~~ar~ 414 (460)
|+|+++|+..+++++.
T Consensus 167 gis~~tV~~~l~ra~~ 182 (194)
T 1or7_A 167 DCPVGTVRSRIFRARE 182 (194)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999987754
No 9
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=99.58 E-value=2.7e-16 Score=142.90 Aligned_cols=143 Identities=14% Similarity=0.088 Sum_probs=116.9
Q ss_pred CCHHHHHHH-Hhcc-HHHHHHHHHHhHHHHHHHHHHccCCCCCcccHHhHHHHHHHHHHhhcCCCCCCchHhHHHHHHHH
Q 012567 271 VDQRELRRR-LNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ 348 (460)
Q Consensus 271 ~de~~L~~~-l~~G-~~A~e~LI~~nlrLV~~IAkry~~~g~d~eDLiQEG~IGLirAiekFDp~kG~rFSTYA~~wIr~ 348 (460)
++...|+.. +..| ..|++.|+..|.+.|+.+++++.++..+++|++||+|+++|+++++|++..| .|.+|++.+++|
T Consensus 11 ~~~~~li~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~~~~~~~aeD~~Qe~~l~~~~~~~~~~~~~~-~~~~wl~~i~~n 89 (184)
T 2q1z_A 11 TDWVALMRAIRDHRDEAAFAELFQHFAPKVKGFLMKSGSVASQAEECAQDVMATVWQKAHLFDPSRA-SVATWIFTIARN 89 (184)
T ss_dssp TCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSGGGCCTTTC-CHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhhhcCcccC-cHHHHHHHHHHH
Confidence 556777777 7777 9999999999999999999999999999999999999999999999998765 899999999999
Q ss_pred HHHHHhhhcCcccccCc-----------c---hHHHHHHHHHHHHHHHHH--------hCCCCCHHHHHHHhCCCHHHHH
Q 012567 349 AVRKSLSDQSRTIRLPF-----------H---MVEATYRVKEARKQLYSE--------NGRHPNNEEVAEATGLSMKRLH 406 (460)
Q Consensus 349 aI~~~Lrk~~r~iriP~-----------~---~~e~i~kl~ka~~~L~~~--------~gr~pS~eEIAe~LGIS~e~Vk 406 (460)
.+++++|++.+....+. . ..+....+..++..|+.. +..+.|++|||+.||+|+.+|+
T Consensus 90 ~~~d~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~~~g~s~~eIA~~lgis~~tV~ 169 (184)
T 2q1z_A 90 RRIDGLRKDRQPEPEDLFWGPDSEPDQADVYEMQQENARLGRAIARLPEAQRALIERAFFGDLTHRELAAETGLPLGTIK 169 (184)
T ss_dssp SCCTTTCSSSCCCCCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSCCSSCCSTTTCCCCCHHHH
T ss_pred HHHHHHHhhcccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHH
Confidence 99999998765332211 0 122334466666655543 2378899999999999999999
Q ss_pred HHHhCCCC
Q 012567 407 AVLLSPKA 414 (460)
Q Consensus 407 ~~l~~ar~ 414 (460)
..+++++.
T Consensus 170 ~~l~ra~~ 177 (184)
T 2q1z_A 170 SRIRLALD 177 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987654
No 10
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=99.39 E-value=3.7e-13 Score=118.81 Aligned_cols=105 Identities=20% Similarity=0.283 Sum_probs=77.5
Q ss_pred CCCcccHHhHHHHHHHHHHhhcCCCCCCchHhHHHHHHHHHHHHHhhhcCcccccC------------------------
Q 012567 309 GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP------------------------ 364 (460)
Q Consensus 309 g~d~eDLiQEG~IGLirAiekFDp~kG~rFSTYA~~wIr~aI~~~Lrk~~r~iriP------------------------ 364 (460)
|.+++|++|||++++|+++.+|++.+ .+|.+|++++++|.+++++|++.+..+.+
T Consensus 1 g~daeDl~Qe~~~~l~~~~~~~~~~~-~~f~~~l~~i~~n~~~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (164)
T 3mzy_A 1 GAEKEDLVQEGILGLLKAIKFYDETK-SSFSSFAFLCIRREMISAIRKANTQKHMVLNEALKTNAILEDSAYFDDEGHNI 79 (164)
T ss_dssp ----CTTHHHHHHHHHHHHHHCCTTT-SCHHHHHHHHHHHHHHHHHHHHHHCC---------------------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCccC-CChHHHhHHHHHHHHHHHHHHhhcccchhhHHHhhhhhhhccCCCCCcccchh
Confidence 57899999999999999999999887 78999999999999999999854321111
Q ss_pred ----------cc---hHHHHHHHHHHHH-HHHH-------HhCCCCCHHHHHHHhCCCHHHHHHHHhCCCC
Q 012567 365 ----------FH---MVEATYRVKEARK-QLYS-------ENGRHPNNEEVAEATGLSMKRLHAVLLSPKA 414 (460)
Q Consensus 365 ----------~~---~~e~i~kl~ka~~-~L~~-------~~gr~pS~eEIAe~LGIS~e~Vk~~l~~ar~ 414 (460)
.. ..+....+..++. .|+. .+-.+.|++|||+.||+|.++|+..+++++.
T Consensus 80 ~~~~~~~~~~~~~~~~~e~~~~l~~~l~~~L~~~~r~v~~~~~~g~s~~EIA~~lgis~~tV~~~~~ra~~ 150 (164)
T 3mzy_A 80 NNYKSSESNPEEAYLLKEEIEEFKKFSENNFSKFEKEVLTYLIRGYSYREIATILSKNLKSIDNTIQRIRK 150 (164)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hhhcccCCCHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 10 1222334555555 4433 3458899999999999999999999987654
No 11
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=99.26 E-value=2.8e-14 Score=128.32 Aligned_cols=126 Identities=6% Similarity=0.023 Sum_probs=97.1
Q ss_pred HHHHHHHhHHHHHHHHHHccCCCCCcccHHhHHHHHHHHHHhhcCCCCCCchHhHHHHHHHHHHHHHhhhcCcccccCcc
Q 012567 287 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFH 366 (460)
Q Consensus 287 ~e~LI~~nlrLV~~IAkry~~~g~d~eDLiQEG~IGLirAiekFDp~kG~rFSTYA~~wIr~aI~~~Lrk~~r~iriP~~ 366 (460)
++.|+..|.+.|+.+|+++.++..+++|++||+|+++|+++.+|++. ..|.+|++.+++|.+++++|+.......+.
T Consensus 3 f~~l~~~~~~~l~~~~~~~~~~~~~AeDlvQe~fl~~~~~~~~~~~~--~~~~~wl~~ia~n~~~d~~R~~~~~~~~~e- 79 (157)
T 2lfw_A 3 LGQQLAPHLPFLRRYGRALTGSQNQGDKYVRATLEAIVAAPDQFPRD--VDPRLGLYRMFQGIWASANADGEAQTSQSD- 79 (157)
T ss_dssp GGGGTGGGGGGGTTTGGGTTSCHHHHHHHHHHHHHTTTTCGGGCCCS--SCTTHHHHHHHHHHHHHHTTTTSCCCCCCS-
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhHHHcCCC--CcHHHHHHHHHHHHHHHHhhccCcccCCcc-
Confidence 56789999999999999999999999999999999999999999975 369999999999999999987542111111
Q ss_pred hHHHHHHHHHHHHHHHH--------HhCCCCCHHHHHHHhCCCHHHHHHHHhCCCCC
Q 012567 367 MVEATYRVKEARKQLYS--------ENGRHPNNEEVAEATGLSMKRLHAVLLSPKAP 415 (460)
Q Consensus 367 ~~e~i~kl~ka~~~L~~--------~~gr~pS~eEIAe~LGIS~e~Vk~~l~~ar~~ 415 (460)
..+....+..++..|+. .+-.+.|++|||+.||||+++|+..+++++..
T Consensus 80 ~~~~~~~l~~~l~~Lp~~~r~vl~L~~~~g~s~~EIA~~lgis~~tV~~~l~rar~~ 136 (157)
T 2lfw_A 80 AEGTEAVARARLARMTPLSRQALLLTAMEGFSPEDAAYLIEVDTSEVETLVTEALAE 136 (157)
T ss_dssp CSSSSSTTTTTTTTSCTTHHHHHTTTSSSCCCHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 01111122333333332 23478999999999999999999999877653
No 12
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.20 E-value=3.3e-12 Score=126.02 Aligned_cols=125 Identities=9% Similarity=-0.006 Sum_probs=100.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHccCCCCCcccHHhHHHHHHHHHHhhcCCCCCCchHhHHHHHHHHHHHHHhhhcCccccc
Q 012567 284 ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 363 (460)
Q Consensus 284 ~~A~e~LI~~nlrLV~~IAkry~~~g~d~eDLiQEG~IGLirAiekFDp~kG~rFSTYA~~wIr~aI~~~Lrk~~r~iri 363 (460)
..+|+.|+..|.+.++.+|++|.++..+++|++||.|+.+|+...+|++. ..|.+|++++++|.+++++|+.......
T Consensus 20 ~~~f~~l~~~~~~~l~~~a~~~~~~~~~AeD~vQe~fl~~~~~~~~~~~~--~~~~~wL~~ia~n~~~d~~r~~~~~~~~ 97 (286)
T 3n0r_A 20 EMHLLARLAPHLPYIRRYARALTGDQATGDHYVRVALEALAAGELVLDAN--LSPRVALYRVFHAIWLSSGAQLEVGHDQ 97 (286)
T ss_dssp CCCHHHHHGGGHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCSS--SCHHHHHHHHHHHHHSCTTC----CCCC
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhCCHhhHHHHHHHHHHHHHhCchhcCCC--cChHHHHHHHHHHHHHhhccccccCCCc
Confidence 56899999999999999999999999999999999999999999999964 4799999999999999999864321111
Q ss_pred CcchHHHHHHHHHHHHHHHHH--------hCCCCCHHHHHHHhCCCHHHHHHHHhCCC
Q 012567 364 PFHMVEATYRVKEARKQLYSE--------NGRHPNNEEVAEATGLSMKRLHAVLLSPK 413 (460)
Q Consensus 364 P~~~~e~i~kl~ka~~~L~~~--------~gr~pS~eEIAe~LGIS~e~Vk~~l~~ar 413 (460)
.. +....+.+++..|+.+ .-.+.+++|||+.||+++++|+..+.+++
T Consensus 98 ~~---~~~~~l~~al~~Lp~~~R~v~~L~~~eg~s~~EIA~~lgis~~tVks~l~rA~ 152 (286)
T 3n0r_A 98 GL---HAGDDAAQRLMRIAPRSRQAFLLTALEGFTPTEAAQILDCDFGEVERLIGDAQ 152 (286)
T ss_dssp CC---CTTSHHHHHHHHHSCHHHHHHHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cc---chHHHHHHHHHhCCHHHeeEEEEEeeCCCCHHHHHHHhCcCHHHHHHHHHHHH
Confidence 11 1123456666666554 33789999999999999999999887554
No 13
>2o7g_A Probable RNA polymerase sigma-C factor; sigma factor, transcription regulation, -10 element recognit domain, transcription; 2.70A {Mycobacterium tuberculosis}
Probab=99.04 E-value=4.3e-10 Score=94.91 Aligned_cols=83 Identities=14% Similarity=0.075 Sum_probs=71.5
Q ss_pred HHHHHHhcc-HHHHHHHHHHhHHHHHHHHHHccCCCCCcccHHhHHHHHHHHHHhhcCCCCCCchHhHHHHHHHHHHHHH
Q 012567 275 ELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKS 353 (460)
Q Consensus 275 ~L~~~l~~G-~~A~e~LI~~nlrLV~~IAkry~~~g~d~eDLiQEG~IGLirAiekFDp~kG~rFSTYA~~wIr~aI~~~ 353 (460)
.|+..+..| ..+++.|+..|.+.++.++.++ ++..+++|++||+|+.+|+.+.+|++. ..|.+|++.+++|.++++
T Consensus 13 ~l~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~-~~~~~aeD~vQe~fl~~~~~~~~~~~~--~~~~~wl~~i~~n~~~d~ 89 (112)
T 2o7g_A 13 ALALSAAKGNGRALEAFIKATQQDVWRFVAYL-SDVGSADDLTQETFLRAIGAIPRFSAR--SSARTWLLAIARHVVADH 89 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHGGGCCCS--SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHHH
Confidence 456666666 8999999999999999999999 888899999999999999999999964 479999999999999999
Q ss_pred hhhcCcc
Q 012567 354 LSDQSRT 360 (460)
Q Consensus 354 Lrk~~r~ 360 (460)
+|++.+.
T Consensus 90 ~R~~~~~ 96 (112)
T 2o7g_A 90 IRHVRSR 96 (112)
T ss_dssp TC-----
T ss_pred HHHhhcc
Confidence 9987653
No 14
>1h3l_A RNA polymerase sigma factor; transcription, DNA-binding, transcription regulation; 2.37A {Streptomyces coelicolor A3} SCOP: a.177.1.1
Probab=98.95 E-value=6.5e-10 Score=89.63 Aligned_cols=74 Identities=14% Similarity=0.097 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHccCCCCCcccHHhHHHHHHHHHHhhcCCCCCCchHhHHHHHHHHHHHHHhhhcCc
Q 012567 284 ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 359 (460)
Q Consensus 284 ~~A~e~LI~~nlrLV~~IAkry~~~g~d~eDLiQEG~IGLirAiekFDp~kG~rFSTYA~~wIr~aI~~~Lrk~~r 359 (460)
..+++.|+..|.+.++.++.++.++..+++|++||+++.+|+.+.+|++. ..|.+|++.+++|.+++++|++.+
T Consensus 11 ~~af~~l~~~~~~~l~~~~~~~~~~~~~aeD~vQe~fl~~~~~~~~~~~~--~~~~~wl~~i~~n~~~d~~R~~~~ 84 (87)
T 1h3l_A 11 SARFERDALEFLDQMYSAALRMTRNPADAEDLVQETYAKAYASFHQFREG--TNLKAWLYRILTNTFINSYRKKQR 84 (87)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHGGGCCSS--SCHHHHHHHHHHHHHHHTCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhcCCC--ccHHHHHHHHHHHHHHHHHHHhcc
Confidence 88999999999999999999999999999999999999999999999974 479999999999999999987653
No 15
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=97.14 E-value=1.5e-07 Score=91.01 Aligned_cols=139 Identities=9% Similarity=-0.023 Sum_probs=96.8
Q ss_pred HHHHHhcc-HHHHHHHHHHhHHHHHHHHHHccCCCCCcccHH----hHHHHHHHHHHhhcCCCCCCchHhHHHHHHHHHH
Q 012567 276 LRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLV----QEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAV 350 (460)
Q Consensus 276 L~~~l~~G-~~A~e~LI~~nlrLV~~IAkry~~~g~d~eDLi----QEG~IGLirAiekFDp~kG~rFSTYA~~wIr~aI 350 (460)
|..+++.+ ..+.+.+...+.++++.+............|+. |+.++.+|+.+..|++. ..|.+|++.+++|.+
T Consensus 87 ll~~i~p~D~~~~~~~~~~~~~fi~~l~~~~~~~~~~~~dl~~~~~qe~fl~~~~~~~~~~~~--~~~~~WL~~ia~n~~ 164 (258)
T 3clo_A 87 IYRRIHPEDLVEKRLMEYKFFQKTFSMSPGERLKYRGRCRLRMMNEKGVYQYIDNLVQIMQNT--PAGNVWLIFCLYSLS 164 (258)
T ss_dssp HHTTBCHHHHHHHHHHHHHHHHHHTTSCHHHHTTEEEEEEEEEECTTSCEEEEEEEEEEEEEC--TTSCEEEEEEEEEEC
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHhcCHHhccCCeeeEEeecCCcCHHHHHHHHhHHhcCCC--CchHHHHHHHHHHHH
Confidence 44455555 677899999999999999888777777888886 99999999999999864 379999999999988
Q ss_pred HHHhhhcCccccc----------CcchHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHhCCCCCc
Q 012567 351 RKSLSDQSRTIRL----------PFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR 416 (460)
Q Consensus 351 ~~~Lrk~~r~iri----------P~~~~e~i~kl~ka~~~L~~~~gr~pS~eEIAe~LGIS~e~Vk~~l~~ar~~l 416 (460)
.++.+.......+ +.........+..-.+++..-...+.|.+|||+.||+|+++|+..+++++..+
T Consensus 165 ~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~erevl~L~~~G~s~~EIA~~L~iS~~TVk~~l~ra~~kL 240 (258)
T 3clo_A 165 ADQRPEQGIYATITQMERGEVETLSLSEEHRNILSEREKEILRCIRKGLSSKEIAATLYISVNTVNRHRQNILEKL 240 (258)
T ss_dssp SCCCCCSSCCCEEEETTTTEEEECCCHHHHTTSSCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred cchhhhhHHHHHHHhhcccccccchhhHHHHccCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 8776542211000 01111111112111122111123789999999999999999999998776543
No 16
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=96.59 E-value=0.00054 Score=74.40 Aligned_cols=33 Identities=33% Similarity=0.603 Sum_probs=13.4
Q ss_pred CCCCHHH-HHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 012567 209 DYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDL 242 (460)
Q Consensus 209 ~~~d~l~-YL~~~~~~~~lLT~EEE~eL~~~Iq~~ 242 (460)
.++||++ ||++| |++||||+|+|++|+++|+.+
T Consensus 93 ~~~dpvrmyl~em-g~~~ll~~~~e~~~ak~ie~g 126 (613)
T 3iyd_F 93 RTTDPVRMYMREM-GTVELLTREGEIDIAKRIEDG 126 (613)
T ss_dssp ------------C---------CSSSTTTHHHHHH
T ss_pred CCCCcHHHHHHHh-cccccCCchhHHHHHHHHHHh
Confidence 4689999 99999 999999999999999999986
No 17
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=92.55 E-value=0.82 Score=47.68 Aligned_cols=30 Identities=20% Similarity=0.199 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHhCCCCCc
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPR 416 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~~ar~~l 416 (460)
.+.|.+|||+.||||.++|+++++++...+
T Consensus 394 e~~TleEIAe~LgIS~erVRqi~~RAlkKL 423 (438)
T 1l9z_H 394 REHTLEEVGAYFGVTRERIRQIENKALRKL 423 (438)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 689999999999999999999998775543
No 18
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=92.20 E-value=0.067 Score=43.08 Aligned_cols=30 Identities=13% Similarity=0.077 Sum_probs=26.6
Q ss_pred hCCCCCHHHHHHHhCCCHHHHHHHHhCCCC
Q 012567 385 NGRHPNNEEVAEATGLSMKRLHAVLLSPKA 414 (460)
Q Consensus 385 ~gr~pS~eEIAe~LGIS~e~Vk~~l~~ar~ 414 (460)
+-.+.|++|||+.||||..+|+..+++++.
T Consensus 50 ~~~g~s~~eIA~~lgis~~tV~~~l~ra~~ 79 (92)
T 3hug_A 50 YYRGWSTAQIATDLGIAEGTVKSRLHYAVR 79 (92)
T ss_dssp HTSCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 467899999999999999999999987654
No 19
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=91.74 E-value=3 Score=37.76 Aligned_cols=31 Identities=16% Similarity=0.023 Sum_probs=26.7
Q ss_pred HhCCCCCHHHHHHHhCCCHHHHHHHHhCCCC
Q 012567 384 ENGRHPNNEEVAEATGLSMKRLHAVLLSPKA 414 (460)
Q Consensus 384 ~~gr~pS~eEIAe~LGIS~e~Vk~~l~~ar~ 414 (460)
.+..+.|.+|||+.||||.++|+..+++++.
T Consensus 199 ~~~~g~s~~EIA~~lgis~~~V~~~~~ra~~ 229 (239)
T 1rp3_A 199 IFYEELPAKEVAKILETSVSRVSQLKAKALE 229 (239)
T ss_dssp HHTSCCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3467899999999999999999999886654
No 20
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=90.75 E-value=0.11 Score=47.46 Aligned_cols=45 Identities=18% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH--------hCCCCCHHHHHHHhCCCHHHHHHHHhCCCCC
Q 012567 371 TYRVKEARKQLYSE--------NGRHPNNEEVAEATGLSMKRLHAVLLSPKAP 415 (460)
Q Consensus 371 i~kl~ka~~~L~~~--------~gr~pS~eEIAe~LGIS~e~Vk~~l~~ar~~ 415 (460)
...+..++..|+.. +..+.|.+|||+.||||+.+|+..+++++..
T Consensus 189 ~~~l~~~l~~L~~~~r~vl~l~~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~ 241 (243)
T 1l0o_C 189 KIALKKAIEELDERERLIVYLRYYKDQTQSEVASRLGISQVQMSRLEKKILQH 241 (243)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 34456666666654 3367899999999999999999999988754
No 21
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=89.66 E-value=0.3 Score=40.58 Aligned_cols=29 Identities=14% Similarity=0.134 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHhCCCCC
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAP 415 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~~ar~~ 415 (460)
.+.|++|||+.||+|.++|++.+.++...
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~rAlkk 66 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAKALRK 66 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 67899999999999999999998876543
No 22
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=87.82 E-value=0.4 Score=36.13 Aligned_cols=30 Identities=13% Similarity=0.134 Sum_probs=26.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHhCCCCC
Q 012567 386 GRHPNNEEVAEATGLSMKRLHAVLLSPKAP 415 (460)
Q Consensus 386 gr~pS~eEIAe~LGIS~e~Vk~~l~~ar~~ 415 (460)
..+.|.+|||+.||+|.++|+..++++...
T Consensus 23 ~~g~s~~eIA~~lgis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDVTRERIRQIEAKALRK 52 (68)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 368999999999999999999998876543
No 23
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=86.47 E-value=0.99 Score=34.49 Aligned_cols=37 Identities=16% Similarity=0.023 Sum_probs=28.8
Q ss_pred HHHHHhCCCCCHHHHHHHhCCCHHHHHHHHhCCCCCc
Q 012567 380 QLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPR 416 (460)
Q Consensus 380 ~L~~~~gr~pS~eEIAe~LGIS~e~Vk~~l~~ar~~l 416 (460)
.+...+..+.+.+|||+.||+|..+|+..+.++...+
T Consensus 23 ~vl~l~~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl 59 (79)
T 1x3u_A 23 QVLSAVVAGLPNKSIAYDLDISPRTVEVHRANVMAKM 59 (79)
T ss_dssp HHHHHHTTTCCHHHHHHHTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 3333356789999999999999999999887665433
No 24
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=86.00 E-value=0.91 Score=34.60 Aligned_cols=28 Identities=21% Similarity=0.246 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHhCCCC
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLLSPKA 414 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~~ar~ 414 (460)
.+.|.+|||+.||+|.++|+..+.++..
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~~ 56 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKALR 56 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7899999999999999999998876543
No 25
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=85.85 E-value=0.88 Score=36.10 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHhCCCC
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLLSPKA 414 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~~ar~ 414 (460)
.+.|.+|||+.||+|.++|+..+.++..
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~ 64 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALR 64 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7899999999999999999999887654
No 26
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=84.66 E-value=1.8 Score=29.11 Aligned_cols=27 Identities=15% Similarity=0.113 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHhCCC
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLLSPK 413 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~~ar 413 (460)
.+.+..+||+.||++..+|...+....
T Consensus 20 ~g~s~~~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 20 LNVSLHEMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHCST
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHhhHH
Confidence 457899999999999999999987543
No 27
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=84.17 E-value=1.2 Score=33.07 Aligned_cols=30 Identities=7% Similarity=0.070 Sum_probs=26.2
Q ss_pred hCCCCCHHHHHHHhCCCHHHHHHHHhCCCC
Q 012567 385 NGRHPNNEEVAEATGLSMKRLHAVLLSPKA 414 (460)
Q Consensus 385 ~gr~pS~eEIAe~LGIS~e~Vk~~l~~ar~ 414 (460)
+..+.|++|||+.||+|..+|+..+++++.
T Consensus 28 ~~~g~s~~eIA~~lgis~~tv~~~~~ra~~ 57 (70)
T 2o8x_A 28 QLLGLSYADAAAVCGCPVGTIRSRVARARD 57 (70)
T ss_dssp HTSCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 457899999999999999999999887654
No 28
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=84.03 E-value=0.47 Score=40.03 Aligned_cols=31 Identities=10% Similarity=-0.022 Sum_probs=26.9
Q ss_pred hCCCCCHHHHHHHhCCCHHHHHHHHhCCCCC
Q 012567 385 NGRHPNNEEVAEATGLSMKRLHAVLLSPKAP 415 (460)
Q Consensus 385 ~gr~pS~eEIAe~LGIS~e~Vk~~l~~ar~~ 415 (460)
+-.+.|+.|||+.||+|..+|+..+++++..
T Consensus 38 ~~~g~s~~EIA~~lgiS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 38 YLEDYSLSEIADTFNVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp HTSCCCHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 4578999999999999999999998877643
No 29
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=82.61 E-value=0.23 Score=39.23 Aligned_cols=31 Identities=6% Similarity=-0.015 Sum_probs=26.2
Q ss_pred hCCCCCHHHHHHHhCCCHHHHHHHHhCCCCC
Q 012567 385 NGRHPNNEEVAEATGLSMKRLHAVLLSPKAP 415 (460)
Q Consensus 385 ~gr~pS~eEIAe~LGIS~e~Vk~~l~~ar~~ 415 (460)
+..+.|++|||+.||+|..+|+..+++++..
T Consensus 33 ~~~g~s~~eIA~~l~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 33 IAQGLPNKMIARRLDITESTVKVHVKHMLKK 63 (82)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3567899999999999999999998865543
No 30
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=81.83 E-value=2.3 Score=33.65 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHh-CCCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 374 VKEARKQLYSEN-GRHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 374 l~ka~~~L~~~~-gr~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
|...++.-..+. |..||..|||+.+|+|..+|+.-+.
T Consensus 9 IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~ 46 (77)
T 2jt1_A 9 IISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLE 46 (77)
T ss_dssp HHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHH
Confidence 333333333333 7889999999999999999988775
No 31
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=81.68 E-value=2.2 Score=30.32 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHhC
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLLS 411 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~~ 411 (460)
.+.|..|||+.||+|..+|...+..
T Consensus 30 ~g~s~~eIA~~lgis~~TV~~~l~~ 54 (55)
T 2x48_A 30 MGYTVQQIANALGVSERKVRRYLES 54 (55)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHh
Confidence 4579999999999999999988764
No 32
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=80.04 E-value=0.73 Score=37.33 Aligned_cols=30 Identities=17% Similarity=0.114 Sum_probs=25.6
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHhCCCCC
Q 012567 386 GRHPNNEEVAEATGLSMKRLHAVLLSPKAP 415 (460)
Q Consensus 386 gr~pS~eEIAe~LGIS~e~Vk~~l~~ar~~ 415 (460)
..+.|++|||+.||+|..+|+..+.+++..
T Consensus 40 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 40 SEGLTNKQIADRMFLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 467899999999999999999998766543
No 33
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=79.79 E-value=1.1 Score=32.56 Aligned_cols=31 Identities=13% Similarity=0.105 Sum_probs=25.6
Q ss_pred hCCCCCHHHHHHHhCCCHHHHHHHHhCCCCC
Q 012567 385 NGRHPNNEEVAEATGLSMKRLHAVLLSPKAP 415 (460)
Q Consensus 385 ~gr~pS~eEIAe~LGIS~e~Vk~~l~~ar~~ 415 (460)
+..+.|.+|||+.||+|+.+|+..+.++...
T Consensus 10 ~~~g~s~~eIA~~l~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 10 IDEGYTNHGISEKLHISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHTSCCSHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3457899999999999999999988765443
No 34
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=79.73 E-value=2.4 Score=43.67 Aligned_cols=29 Identities=21% Similarity=0.229 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHhCCCCC
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAP 415 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~~ar~~ 415 (460)
.+.|.+|||+.||||.++|+++++++...
T Consensus 379 e~~Tl~EIA~~lgiS~erVrqi~~rAl~k 407 (423)
T 2a6h_F 379 REHTLEEVGAFFGVTRERIRQIENKALRK 407 (423)
T ss_dssp -----CHHHHSSSSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 67899999999999999999998876543
No 35
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=74.77 E-value=3.5 Score=30.69 Aligned_cols=29 Identities=14% Similarity=0.110 Sum_probs=24.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHhCCCC
Q 012567 386 GRHPNNEEVAEATGLSMKRLHAVLLSPKA 414 (460)
Q Consensus 386 gr~pS~eEIAe~LGIS~e~Vk~~l~~ar~ 414 (460)
..+.|..|||+.||+|..+|+..+.++..
T Consensus 24 ~~g~s~~eIA~~l~is~~tV~~~~~~~~~ 52 (74)
T 1fse_A 24 VQDKTTKEIASELFISEKTVRNHISNAMQ 52 (74)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56779999999999999999998876543
No 36
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=74.25 E-value=0.88 Score=36.32 Aligned_cols=31 Identities=16% Similarity=0.237 Sum_probs=25.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHhCCCCCc
Q 012567 386 GRHPNNEEVAEATGLSMKRLHAVLLSPKAPR 416 (460)
Q Consensus 386 gr~pS~eEIAe~LGIS~e~Vk~~l~~ar~~l 416 (460)
..+.|.+|||+.||+|..+|+..+.+++..+
T Consensus 42 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL 72 (91)
T 2rnj_A 42 AKGYSNQEIASASHITIKTVKTHVSNILSKL 72 (91)
T ss_dssp HTTCCTTHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 3578999999999999999999988665433
No 37
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=72.88 E-value=4.3 Score=32.60 Aligned_cols=29 Identities=28% Similarity=0.236 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHhCCCCC
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAP 415 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~~ar~~ 415 (460)
.+.+.+|||+.||||+.+|+..+..+...
T Consensus 43 ~G~s~~eIA~~L~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 43 KGFTNQEIADALHLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 67899999999999999999988765433
No 38
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=71.95 E-value=2.5 Score=35.55 Aligned_cols=29 Identities=14% Similarity=0.155 Sum_probs=25.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHhCCCC
Q 012567 386 GRHPNNEEVAEATGLSMKRLHAVLLSPKA 414 (460)
Q Consensus 386 gr~pS~eEIAe~LGIS~e~Vk~~l~~ar~ 414 (460)
..+.|+.|||+.||+|..+|+..+++++.
T Consensus 36 ~~g~s~~EIA~~lgiS~~tV~~~l~ra~~ 64 (113)
T 1s7o_A 36 ADDYSLAEIADEFGVSRQAVYDNIKRTEK 64 (113)
T ss_dssp HTCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 46789999999999999999999887664
No 39
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=70.53 E-value=7.9 Score=35.06 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 371 TYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 371 i~kl~ka~~~L~~~~gr~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
..++...+.++..+.|..||..|||+.+|++..+|...+.
T Consensus 7 q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~ 46 (196)
T 3k2z_A 7 QRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLI 46 (196)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHH
Confidence 4456666777777788999999999999999999988764
No 40
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=66.70 E-value=3.6 Score=33.78 Aligned_cols=30 Identities=17% Similarity=0.002 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHhCCCCCc
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPR 416 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~~ar~~l 416 (460)
.+.+.+|||+.||||+.+|+..+.++...+
T Consensus 48 ~G~s~~EIA~~L~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 48 EGFLVTEIAKKLNRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 468999999999999999999887655433
No 41
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=63.03 E-value=15 Score=29.54 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 374 VKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 374 l~ka~~~L~~~~gr~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
+.++...+...+...++.++||+.+|+|...+....+
T Consensus 4 i~~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk 40 (108)
T 3mn2_A 4 VRQVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQ 40 (108)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 4556666667777789999999999999999988776
No 42
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=62.63 E-value=4.8 Score=39.79 Aligned_cols=17 Identities=18% Similarity=0.161 Sum_probs=13.5
Q ss_pred CCCHHHHHHHHHHHHHH
Q 012567 226 LLTANEEMQLSAGIQDL 242 (460)
Q Consensus 226 lLT~EEE~eL~~~Iq~~ 242 (460)
|||+|+|++|+++|+.|
T Consensus 1 LLTREgEI~IAKRIE~G 17 (339)
T 1sig_A 1 GSHMEGEIDIAKRIEDG 17 (339)
T ss_dssp ---CCTHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHH
Confidence 79999999999999986
No 43
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=58.93 E-value=17 Score=29.21 Aligned_cols=38 Identities=26% Similarity=0.251 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 373 RVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 373 kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
.+.++...+...+. ..++.++||+.+|+|...+....+
T Consensus 4 ~i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk 42 (107)
T 2k9s_A 4 RVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFR 42 (107)
T ss_dssp HHHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 35566666667777 789999999999999999987765
No 44
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=58.51 E-value=6.7 Score=36.35 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHhCCCCCccc
Q 012567 386 GRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSL 418 (460)
Q Consensus 386 gr~pS~eEIAe~LGIS~e~Vk~~l~~ar~~lSL 418 (460)
..+.|..|||+.||||..+|..++..|+-...+
T Consensus 22 ~~g~tQ~eIA~~lGiSr~~VSR~L~~A~~~~~l 54 (192)
T 1zx4_A 22 NDGMSQKDIAAKEGLSQAKVTRALQAASAPEEL 54 (192)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHTSCHHH
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHHHhccchhh
Confidence 356999999999999999999999887743333
No 45
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=57.83 E-value=8.3 Score=26.13 Aligned_cols=25 Identities=12% Similarity=0.154 Sum_probs=21.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHhCC
Q 012567 388 HPNNEEVAEATGLSMKRLHAVLLSP 412 (460)
Q Consensus 388 ~pS~eEIAe~LGIS~e~Vk~~l~~a 412 (460)
+.+..+||+.+|++..+|...+...
T Consensus 21 g~s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 21 GHPRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp TCCHHHHHHTTSCCHHHHHHHSCTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHc
Confidence 3799999999999999999887643
No 46
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=57.76 E-value=19 Score=28.92 Aligned_cols=37 Identities=3% Similarity=-0.001 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 374 VKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 374 l~ka~~~L~~~~gr~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
+.++...+...+...++.++||+.+|+|...+....+
T Consensus 7 i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk 43 (108)
T 3oou_A 7 IQNVLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQ 43 (108)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4455556666677789999999999999999988765
No 47
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=56.13 E-value=15 Score=29.79 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 373 RVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 373 kl~ka~~~L~~~~gr~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
.+.++...+...+...++.++||+.+|+|...+....+
T Consensus 8 ~i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk 45 (113)
T 3oio_A 8 KLTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFK 45 (113)
T ss_dssp HHHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 34555556666667789999999999999999988776
No 48
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=55.39 E-value=25 Score=27.86 Aligned_cols=35 Identities=11% Similarity=-0.007 Sum_probs=26.8
Q ss_pred HHHHHHHHHhCC-CCCHHHHHHHhCCCHHHHHHHHh
Q 012567 376 EARKQLYSENGR-HPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 376 ka~~~L~~~~gr-~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
++..-+...+.. .++.++||+.+|+|...+....+
T Consensus 6 ~i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk 41 (103)
T 3lsg_A 6 LIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFK 41 (103)
T ss_dssp HHHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 344444555555 78999999999999999988765
No 49
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=54.78 E-value=17 Score=27.32 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=22.8
Q ss_pred hCCCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 385 NGRHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 385 ~gr~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
.+...+..|||+.||+|..+|...+.
T Consensus 22 ~~~~~s~~eLA~~lglsr~tv~~~l~ 47 (67)
T 2heo_A 22 DGGPVAIFQLVKKCQVPKKTLNQVLY 47 (67)
T ss_dssp HCSCEEHHHHHHHHCSCHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 45567999999999999999998876
No 50
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=54.52 E-value=11 Score=34.72 Aligned_cols=30 Identities=17% Similarity=0.219 Sum_probs=25.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHhCCCCC
Q 012567 386 GRHPNNEEVAEATGLSMKRLHAVLLSPKAP 415 (460)
Q Consensus 386 gr~pS~eEIAe~LGIS~e~Vk~~l~~ar~~ 415 (460)
..+.|.+|||+.||||+.+|+..++.++..
T Consensus 186 ~~g~s~~eIa~~l~is~~tV~~~~~~~~~k 215 (234)
T 1l3l_A 186 AVGKTMEEIADVEGVKYNSVRVKLREAMKR 215 (234)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 568899999999999999999998865543
No 51
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=53.20 E-value=27 Score=26.27 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
.+.|..++|+.+|++..+|..+.+
T Consensus 24 ~gltq~~lA~~~gvs~~~is~~e~ 47 (80)
T 3kz3_A 24 LGLSYESVADKMGMGQSAVAALFN 47 (80)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHc
Confidence 467899999999999999999886
No 52
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=52.79 E-value=26 Score=27.70 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=22.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHhC
Q 012567 386 GRHPNNEEVAEATGLSMKRLHAVLLS 411 (460)
Q Consensus 386 gr~pS~eEIAe~LGIS~e~Vk~~l~~ 411 (460)
|...|..|||+.||++..+|...++.
T Consensus 25 g~~~t~~eLA~~Lgvsr~tV~~~L~~ 50 (81)
T 1qbj_A 25 GKATTAHDLSGKLGTPKKEINRVLYS 50 (81)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 35679999999999999999998874
No 53
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=51.03 E-value=19 Score=28.24 Aligned_cols=30 Identities=23% Similarity=0.236 Sum_probs=22.5
Q ss_pred HHHHHhhhcCCCCcHHHHHHHhCCCHHHHH
Q 012567 248 LREVLSERCGGSPTFAQWAAAAGVDQRELR 277 (460)
Q Consensus 248 ~~~~L~~~~g~~pt~~ewA~a~g~de~~L~ 277 (460)
++..+.+..|.+||..|.|+++|++...+.
T Consensus 13 I~~~i~~~~g~~psv~EIa~~lgvS~~TVr 42 (77)
T 2jt1_A 13 VQERQNMDDGAPVKTRDIADAAGLSIYQVR 42 (77)
T ss_dssp HHHHHHHHTTSCEEHHHHHHHHTCCHHHHH
T ss_pred HHHHHhhccCCCcCHHHHHHHHCCCHHHHH
Confidence 344444556899999999999999875543
No 54
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=50.55 E-value=11 Score=34.75 Aligned_cols=30 Identities=17% Similarity=0.249 Sum_probs=25.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHhCCCCC
Q 012567 386 GRHPNNEEVAEATGLSMKRLHAVLLSPKAP 415 (460)
Q Consensus 386 gr~pS~eEIAe~LGIS~e~Vk~~l~~ar~~ 415 (460)
..+.|.+|||+.||||+.+|+..+..++..
T Consensus 188 ~~g~s~~eIa~~l~is~~tV~~~~~~~~~k 217 (236)
T 2q0o_A 188 SKGKTASVTANLTGINARTVQHYLDKARAK 217 (236)
T ss_dssp HTTCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 367899999999999999999988765443
No 55
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=50.47 E-value=30 Score=30.99 Aligned_cols=37 Identities=22% Similarity=0.281 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHhCCC-HHHHHHHHh
Q 012567 374 VKEARKQLYSENGRHPNNEEVAEATGLS-MKRLHAVLL 410 (460)
Q Consensus 374 l~ka~~~L~~~~gr~pS~eEIAe~LGIS-~e~Vk~~l~ 410 (460)
+.+.++.+..+.|-.||..|||+.+|++ ..+|...+.
T Consensus 11 i~~~i~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~ 48 (202)
T 1jhf_A 11 VFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLK 48 (202)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHhCCCChHHHHHHHH
Confidence 4444445555667778999999999999 888877664
No 56
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=50.45 E-value=7.4 Score=36.30 Aligned_cols=30 Identities=3% Similarity=0.042 Sum_probs=25.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHhCCCCC
Q 012567 386 GRHPNNEEVAEATGLSMKRLHAVLLSPKAP 415 (460)
Q Consensus 386 gr~pS~eEIAe~LGIS~e~Vk~~l~~ar~~ 415 (460)
..+.|.+|||+.||||+.+|+..+..+...
T Consensus 188 ~~G~s~~eIa~~l~is~~tV~~~~~~~~~k 217 (237)
T 3szt_A 188 AVGKTYGEIGLILSIDQRTVKFHIVNAMRK 217 (237)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999988765443
No 57
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=49.56 E-value=12 Score=27.09 Aligned_cols=25 Identities=12% Similarity=0.216 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHhC
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLLS 411 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~~ 411 (460)
.+.|..++|+.+|++..+|..+..-
T Consensus 15 ~glsq~~lA~~~gis~~~i~~~e~g 39 (71)
T 1zug_A 15 LKMTQTELATKAGVKQQSIQLIEAG 39 (71)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 4689999999999999999998863
No 58
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=48.51 E-value=15 Score=27.78 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=21.2
Q ss_pred CCHHHHHHHhCCCHHHHHHHHhCC
Q 012567 389 PNNEEVAEATGLSMKRLHAVLLSP 412 (460)
Q Consensus 389 pS~eEIAe~LGIS~e~Vk~~l~~a 412 (460)
+|..+||+.+|+|..+|..+++-.
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng~ 24 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVINGK 24 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCC
Confidence 478999999999999999999843
No 59
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=46.89 E-value=21 Score=29.69 Aligned_cols=22 Identities=9% Similarity=0.152 Sum_probs=19.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHH
Q 012567 387 RHPNNEEVAEATGLSMKRLHAV 408 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~ 408 (460)
.+.|+.|||+.||+|..+|-.+
T Consensus 57 ge~TQREIA~~lGiS~stISRi 78 (101)
T 1jhg_A 57 GEMSQRELKNELGAGIATITRG 78 (101)
T ss_dssp CCSCHHHHHHHHCCCHHHHHHH
T ss_pred CCcCHHHHHHHHCCChhhhhHH
Confidence 3599999999999999888665
No 60
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=45.70 E-value=25 Score=27.27 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHhC
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLLS 411 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~~ 411 (460)
...|..|||+.||++..+|...+..
T Consensus 30 ~~~t~~eLA~~Lgvs~~tV~~~L~~ 54 (77)
T 1qgp_A 30 KATTAHDLSGKLGTPKKEINRVLYS 54 (77)
T ss_dssp SCEEHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 4678999999999999999998863
No 61
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=45.24 E-value=27 Score=28.64 Aligned_cols=38 Identities=11% Similarity=-0.043 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHhC
Q 012567 374 VKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLS 411 (460)
Q Consensus 374 l~ka~~~L~~~~gr~pS~eEIAe~LGIS~e~Vk~~l~~ 411 (460)
+.++...+...+...++.++||+.+|+|...+....+.
T Consensus 9 ~~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 9 RTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp HHHHHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 33444455556667889999999999999999888764
No 62
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=45.06 E-value=51 Score=25.13 Aligned_cols=40 Identities=20% Similarity=0.231 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHhC
Q 012567 370 ATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLS 411 (460)
Q Consensus 370 ~i~kl~ka~~~L~~~~gr~pS~eEIAe~LGIS~e~Vk~~l~~ 411 (460)
...++...++.+... .+.|..++|+.+|++..+|..+..-
T Consensus 14 ~~~~l~~~l~~~R~~--~glsq~~lA~~~gis~~~is~~e~g 53 (92)
T 1lmb_3 14 DARRLKAIYEKKKNE--LGLSQESVADKMGMGQSGVGALFNG 53 (92)
T ss_dssp HHHHHHHHHHHHHHH--HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 334455555555444 3579999999999999999988763
No 63
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=44.44 E-value=18 Score=27.28 Aligned_cols=22 Identities=9% Similarity=0.089 Sum_probs=20.3
Q ss_pred CHHHHHHHhCCCHHHHHHHHhC
Q 012567 390 NNEEVAEATGLSMKRLHAVLLS 411 (460)
Q Consensus 390 S~eEIAe~LGIS~e~Vk~~l~~ 411 (460)
|..++|+.+|++..+|..+..-
T Consensus 13 sq~~lA~~lgvs~~~is~~e~g 34 (79)
T 3bd1_A 13 SVSALAASLGVRQSAISNWRAR 34 (79)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHC
Confidence 8999999999999999998874
No 64
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=43.96 E-value=19 Score=28.80 Aligned_cols=22 Identities=5% Similarity=0.234 Sum_probs=21.0
Q ss_pred CCHHHHHHHhCCCHHHHHHHHh
Q 012567 389 PNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 389 pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
.|..|||+.||+|...|...++
T Consensus 31 ~sa~eLAk~LgiSk~aVr~~L~ 52 (82)
T 1oyi_A 31 ATAAQLTRQLNMEKREVNKALY 52 (82)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHH
Confidence 8999999999999999999887
No 65
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=43.67 E-value=59 Score=23.38 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
.+.|..++|+.+|++..+|..+..
T Consensus 25 ~g~s~~~lA~~~gis~~~i~~~e~ 48 (74)
T 1y7y_A 25 KGLSQETLAFLSGLDRSYVGGVER 48 (74)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHC
Confidence 468999999999999999998876
No 66
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=43.62 E-value=7.2 Score=37.23 Aligned_cols=29 Identities=17% Similarity=0.117 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHhCCCCC
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAP 415 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~~ar~~ 415 (460)
.+.|.+|||+.||||+.+|+..+..+...
T Consensus 211 ~G~s~~eIA~~l~is~~TV~~~~~~~~~k 239 (265)
T 3qp6_A 211 RGKTNWEIATILNISERTVKFHVANVIRK 239 (265)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 58899999999999999999988765443
No 67
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=42.45 E-value=91 Score=25.15 Aligned_cols=24 Identities=13% Similarity=0.056 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
...+..+||+.+|++..+|...+.
T Consensus 42 ~~~~~~ela~~l~~s~~tvs~~l~ 65 (138)
T 3bpv_A 42 PGIKQDELATFFHVDKGTIARTLR 65 (138)
T ss_dssp TTCBHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Confidence 567999999999999999988876
No 68
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=41.14 E-value=16 Score=26.22 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHhC
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLLS 411 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~~ 411 (460)
.+.|..++|+.+|++..+|..+..-
T Consensus 13 ~glsq~~lA~~~gis~~~i~~~e~g 37 (69)
T 1r69_A 13 LGLNQAELAQKVGTTQQSIEQLENG 37 (69)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4688999999999999999998763
No 69
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=40.99 E-value=20 Score=28.34 Aligned_cols=41 Identities=15% Similarity=0.129 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHhC
Q 012567 369 EATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLS 411 (460)
Q Consensus 369 e~i~kl~ka~~~L~~~~gr~pS~eEIAe~LGIS~e~Vk~~l~~ 411 (460)
+....+.+++..|+. +...|..+||..||++...|...|..
T Consensus 12 ~~~~~v~~~i~~L~~--~~~~Ta~~IAkkLg~sK~~vNr~LY~ 52 (75)
T 1sfu_A 12 EIFSLVKKEVLSLNT--NDYTTAISLSNRLKINKKKINQQLYK 52 (75)
T ss_dssp HHHHHHHHHHHTSCT--TCEECHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC--CcchHHHHHHHHHCCCHHHHHHHHHH
Confidence 445556666554442 23368999999999999999998873
No 70
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=40.88 E-value=63 Score=24.08 Aligned_cols=24 Identities=13% Similarity=-0.000 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
.+.|..++|+.+|++..+|..+..
T Consensus 26 ~gltq~elA~~~gis~~~is~~e~ 49 (83)
T 3f6w_A 26 AGITQKELAARLGRPQSFVSKTEN 49 (83)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHC
Confidence 358999999999999999998876
No 71
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=40.56 E-value=14 Score=30.68 Aligned_cols=31 Identities=13% Similarity=0.009 Sum_probs=27.1
Q ss_pred hCCCCCHHHHHHHhCCCHHHHHHHHhCCCCC
Q 012567 385 NGRHPNNEEVAEATGLSMKRLHAVLLSPKAP 415 (460)
Q Consensus 385 ~gr~pS~eEIAe~LGIS~e~Vk~~l~~ar~~ 415 (460)
+-.+.|..|||+.||+|-.+|..++..++..
T Consensus 31 Yv~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~ 61 (101)
T 2w7n_A 31 LVDGKPQATFATSLGLTRGAVSQAVHRVWAA 61 (101)
T ss_dssp HTTCCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4578899999999999999999999877653
No 72
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=40.50 E-value=69 Score=23.25 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
.+.|..++|+.+|++..+|..+..
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e~ 45 (77)
T 2b5a_A 22 KGVSQEELADLAGLHRTYISEVER 45 (77)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHC
Confidence 468999999999999999998876
No 73
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=40.39 E-value=30 Score=28.80 Aligned_cols=38 Identities=16% Similarity=0.133 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 373 RVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 373 kl~ka~~~L~~~~gr~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
.+.++...+...+...++.++||+.+|+|...+..+.+
T Consensus 12 ~i~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk 49 (129)
T 1bl0_A 12 TIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFK 49 (129)
T ss_dssp HHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 34555555666667779999999999999998877765
No 74
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=39.62 E-value=66 Score=26.53 Aligned_cols=64 Identities=8% Similarity=0.023 Sum_probs=36.3
Q ss_pred hHhHHHHHHHHHHHHHhhhcC-cccccCcchHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 338 FSTYAHWWIKQAVRKSLSDQS-RTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 338 FSTYA~~wIr~aI~~~Lrk~~-r~iriP~~~~e~i~kl~ka~~~L~~~~gr~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
+-.|...++.+.+.+.+.+.- ....+.......+. .|. . ....+..+||+.+|++..+|...+.
T Consensus 12 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~iL~-------~l~-~-~~~~t~~ela~~l~~~~~tvs~~l~ 76 (148)
T 3nrv_A 12 HATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIIS-------VLS-S-ASDCSVQKISDILGLDKAAVSRTVK 76 (148)
T ss_dssp CHHHHHHHHHHHHHHC----CCGGGTCCHHHHHHHH-------HHH-H-SSSBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH-------HHH-c-CCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 455666666667766665432 11223322222221 222 2 2378999999999999999988775
No 75
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=39.16 E-value=74 Score=23.66 Aligned_cols=32 Identities=9% Similarity=0.146 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHhCCCCCcccc
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLD 419 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~~ar~~lSLD 419 (460)
++.|..++|+.+|++..+|..+..- ....+++
T Consensus 23 ~glsq~~lA~~~gis~~~i~~~e~g-~~~~~~~ 54 (82)
T 3s8q_A 23 KGMTQEDLAYKSNLDRTYISGIERN-SRNLTIK 54 (82)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT-CCCCBHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHCC-CCCCCHH
Confidence 5689999999999999999988763 2334444
No 76
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=39.05 E-value=73 Score=24.09 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHhC
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLLS 411 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~~ 411 (460)
.+.|..++|+.+|++..+|..+.+-
T Consensus 30 ~glsq~elA~~~gis~~~is~~e~g 54 (83)
T 2a6c_A 30 SGLTQFKAAELLGVTQPRVSDLMRG 54 (83)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5789999999999999999998863
No 77
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=39.04 E-value=56 Score=27.29 Aligned_cols=39 Identities=10% Similarity=0.181 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHH
Q 012567 369 EATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHA 407 (460)
Q Consensus 369 e~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~ 407 (460)
+...+|..+..+|..+.| ...|..+||+..|+|.+++-.
T Consensus 8 ~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 47 (188)
T 3qkx_A 8 DLAEQIFSATDRLMAREGLNQLSMLKLAKEANVAAGTIYL 47 (188)
T ss_dssp HHHHHHHHHHHHHHHHSCSTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcchHHH
Confidence 345567777777777777 568999999999999998854
No 78
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=38.18 E-value=8.5 Score=29.76 Aligned_cols=49 Identities=18% Similarity=0.097 Sum_probs=31.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHhCCCCCcccccccccCCCCCccccccc
Q 012567 386 GRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSVCFIL 436 (460)
Q Consensus 386 gr~pS~eEIAe~LGIS~e~Vk~~l~~ar~~lSLD~~v~~e~d~tl~Eli~D 436 (460)
.++.|..++|+.+|++..+|...+.. ...+....|.+--+.++.+++++
T Consensus 20 ~~glT~~~LA~~~Gvs~stls~~~~~--~~p~~~~~IA~aLgv~~~~L~~~ 68 (74)
T 1neq_A 20 KRKLSLSALSRQFGYAPTTLANALER--HWPKGEQIIANALETKPEVIWPS 68 (74)
T ss_dssp TTSCCHHHHHHHHSSCHHHHHHTTTS--SCHHHHHHHHHHTTSCHHHHCTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC--CCccHHHHHHHHHCcCHHHHhHH
Confidence 45789999999999999999987653 12233322333334455555554
No 79
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=37.66 E-value=91 Score=25.22 Aligned_cols=63 Identities=8% Similarity=0.043 Sum_probs=36.5
Q ss_pred HhHHHHHHHHHHHHHhhhcCcccccCcchHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 339 STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 339 STYA~~wIr~aI~~~Lrk~~r~iriP~~~~e~i~kl~ka~~~L~~~~gr~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
-.|..+.+.+.+.+.+.+.-....++......+. .|.. ....+..+||+.+|++..+|...+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~iL~-------~l~~--~~~~~~~~la~~l~~~~~tvs~~l~ 70 (138)
T 1jgs_A 8 LGRLIHMVNQKKDRLLNEYLSPLDITAAQFKVLC-------SIRC--AACITPVELKKVLSVDLGALTRMLD 70 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHH-------HHHH--HSSBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHH-------HHHh--cCCCCHHHHHHHHCCChHHHHHHHH
Confidence 4455666666666555543222223322222222 2222 1357999999999999999988876
No 80
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=37.60 E-value=29 Score=24.45 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
.+.|..++|+.+|++..+|..+..
T Consensus 13 ~g~s~~~lA~~~gis~~~i~~~e~ 36 (66)
T 2xi8_A 13 KKISQSELAALLEVSRQTINGIEK 36 (66)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 468999999999999999998876
No 81
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=37.51 E-value=45 Score=25.38 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
..++..|||+.+|+|..+|...+.
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~ 36 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLL 36 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 458999999999999999998876
No 82
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=36.88 E-value=69 Score=26.59 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 386 GRHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 386 gr~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
+...+..+||+.+|++..+|..++.
T Consensus 52 ~~~~t~~eLa~~l~i~~~tvs~~l~ 76 (150)
T 3fm5_A 52 AEGVNQRGVAATMGLDPSQIVGLVD 76 (150)
T ss_dssp TTCCCSHHHHHHHTCCHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHhHHHHHHH
Confidence 3446999999999999999988875
No 83
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=36.43 E-value=65 Score=26.24 Aligned_cols=24 Identities=13% Similarity=0.106 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
...+..+||+.+|++..+|..++.
T Consensus 46 ~~~t~~ela~~l~~~~~tvs~~l~ 69 (139)
T 3eco_A 46 DGLTQNDIAKALQRTGPTVSNLLR 69 (139)
T ss_dssp TCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CCcCHHHHHHHhCCCcccHHHHHH
Confidence 467999999999999999988875
No 84
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=36.20 E-value=62 Score=27.46 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHH
Q 012567 369 EATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLH 406 (460)
Q Consensus 369 e~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk 406 (460)
....+|.++..+|..+.| ...|..+||+..|++..++-
T Consensus 11 ~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y 49 (203)
T 3b81_A 11 NKRTELANKIWDIFIANGYENTTLAFIINKLGISKGALY 49 (203)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCchhHH
Confidence 445567777777777777 67899999999999988874
No 85
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=36.00 E-value=45 Score=29.70 Aligned_cols=36 Identities=17% Similarity=0.046 Sum_probs=29.4
Q ss_pred HhCCCCCHHHHHHHhCCCHHHHHHHHhCCCCCcccc
Q 012567 384 ENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLD 419 (460)
Q Consensus 384 ~~gr~pS~eEIAe~LGIS~e~Vk~~l~~ar~~lSLD 419 (460)
.+..+.+.++||+.|+++..+|+..+.+.+..+...
T Consensus 170 ~l~~g~s~~~Ia~~l~~s~~Tv~~~i~~l~~KL~~~ 205 (225)
T 3klo_A 170 LLGSGASNIEIADKLFVSENTVKTHLHNVFKKINAK 205 (225)
T ss_dssp HHTTTCCHHHHHHHTTCCHHHHHHHHHHHTTTSCCS
T ss_pred HHHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCC
Confidence 345678999999999999999999988776665443
No 86
>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*
Probab=35.77 E-value=44 Score=31.04 Aligned_cols=51 Identities=10% Similarity=0.062 Sum_probs=37.9
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHhCC
Q 012567 362 RLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSP 412 (460)
Q Consensus 362 riP~~~~e~i~kl~ka~~~L~~~~gr~pS~eEIAe~LGIS~e~Vk~~l~~a 412 (460)
.+|......+....+..+.|..+.-...|.+|||+.+|++..+|+.=+.+.
T Consensus 7 ~i~~~~~~Rl~~Y~r~l~~l~~~g~~~iss~~l~~~~~~~~~~iRkdls~f 57 (215)
T 2vt3_A 7 KIPQATAKRLPLYYRFLKNLHASGKQRVSSAELSDAVKVDSATIRRDFSYF 57 (215)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHCCCHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHcCCcEECHHHHHHHhCCCHHHeechHHHH
Confidence 467777777777777777887775566799999999999999998877643
No 87
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=35.58 E-value=35 Score=26.53 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHhC
Q 012567 386 GRHPNNEEVAEATGLSMKRLHAVLLS 411 (460)
Q Consensus 386 gr~pS~eEIAe~LGIS~e~Vk~~l~~ 411 (460)
..+.|..++|+.+|++..+|..+..-
T Consensus 20 ~~glsq~~lA~~~gis~~~is~~e~G 45 (94)
T 2kpj_A 20 KSEKTQLEIAKSIGVSPQTFNTWCKG 45 (94)
T ss_dssp TSSSCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHhC
Confidence 35789999999999999999988763
No 88
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=35.15 E-value=1.1e+02 Score=21.67 Aligned_cols=24 Identities=8% Similarity=-0.097 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHhC--CCHHHHHHHHh
Q 012567 387 RHPNNEEVAEATG--LSMKRLHAVLL 410 (460)
Q Consensus 387 r~pS~eEIAe~LG--IS~e~Vk~~l~ 410 (460)
++.|..++|+.+| ++..+|..+..
T Consensus 20 ~glsq~~lA~~~g~~is~~~i~~~e~ 45 (71)
T 2ewt_A 20 QGLSLHGVEEKSQGRWKAVVVGSYER 45 (71)
T ss_dssp TTCCHHHHHHHTTTSSCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCcCCHHHHHHHHC
Confidence 4689999999999 99999998877
No 89
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=35.08 E-value=87 Score=22.75 Aligned_cols=33 Identities=15% Similarity=0.232 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHhCCCCCcccc
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLD 419 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~~ar~~lSLD 419 (460)
++.|..++|+.+|++..+|..+..--....+++
T Consensus 19 ~g~sq~~lA~~~gis~~~i~~~e~g~~~~~~~~ 51 (78)
T 3b7h_A 19 QNLTINRVATLAGLNQSTVNAMFEGRSKRPTIT 51 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHCTTCCCCCHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHH
Confidence 468999999999999999999876333134444
No 90
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=35.05 E-value=91 Score=26.06 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
...+..+||+.+|++..+|..++.
T Consensus 62 ~~~t~~ela~~l~is~~tvs~~l~ 85 (162)
T 2fa5_A 62 PGSSASEVSDRTAMDKVAVSRAVA 85 (162)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Confidence 468999999999999999988775
No 91
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=34.84 E-value=86 Score=25.40 Aligned_cols=24 Identities=4% Similarity=0.093 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
...+..+||+.+|++..+|..++.
T Consensus 49 ~~~~~~ela~~l~~~~~tvs~~l~ 72 (141)
T 3bro_A 49 KEVLQRDLESEFSIKSSTATVLLQ 72 (141)
T ss_dssp SCCBHHHHHHHHTCCHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCcchHHHHHH
Confidence 368999999999999999988875
No 92
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=34.66 E-value=87 Score=24.88 Aligned_cols=32 Identities=9% Similarity=0.149 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHhCCCCCcccc
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLD 419 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~~ar~~lSLD 419 (460)
++.|.+++|+.+|++..+|..+..-- ...+++
T Consensus 40 ~gltq~elA~~~gis~~~is~iE~G~-~~ps~~ 71 (99)
T 3g5g_A 40 KGMTQEDLAYKSNLDRTYISGIERNS-RNLTIK 71 (99)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTTC-SCCBHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCCC-CCCCHH
Confidence 57899999999999999999887632 334444
No 93
>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*
Probab=34.26 E-value=49 Score=30.59 Aligned_cols=50 Identities=8% Similarity=0.050 Sum_probs=37.7
Q ss_pred cCcchHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHhCC
Q 012567 363 LPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSP 412 (460)
Q Consensus 363 iP~~~~e~i~kl~ka~~~L~~~~gr~pS~eEIAe~LGIS~e~Vk~~l~~a 412 (460)
+|......+....+..+.|..+.-...|.+|||+.+|++..+|+.=+.+.
T Consensus 3 i~~~~~~Rl~~y~r~l~~l~~~g~~~iss~~l~~~~~~~~~~iRkdls~~ 52 (211)
T 2dt5_A 3 VPEAAISRLITYLRILEELEAQGVHRTSSEQLGGLAQVTAFQVRKDLSYF 52 (211)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHTSCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCcEECHHHHHHHhCCCHHHeechHHHH
Confidence 56555556666667777777664466799999999999999999877643
No 94
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=34.01 E-value=1.4e+02 Score=23.94 Aligned_cols=23 Identities=9% Similarity=0.161 Sum_probs=21.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHh
Q 012567 388 HPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 388 ~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
..+..+||+.+|++..+|...+.
T Consensus 52 ~~t~~ela~~l~~~~~tvs~~l~ 74 (140)
T 2nnn_A 52 PCPQNQLGRLTAMDAATIKGVVE 74 (140)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHH
Confidence 67999999999999999988876
No 95
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=33.89 E-value=64 Score=27.58 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHH
Q 012567 369 EATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHA 407 (460)
Q Consensus 369 e~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~ 407 (460)
....+|.++..+|..+.| ...|.++||+..|++.+++-.
T Consensus 12 ~~r~~Il~aA~~lf~e~G~~~~t~~~IA~~agvsk~tlY~ 51 (192)
T 2fq4_A 12 ETQKAILSASYELLLESGFKAVTVDKIAERAKVSKATIYK 51 (192)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccccHHHHHHHcCCCHHHHHH
Confidence 345667777777777777 678999999999999999843
No 96
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=33.81 E-value=67 Score=27.63 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHH
Q 012567 370 ATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHA 407 (460)
Q Consensus 370 ~i~kl~ka~~~L~~~~gr~pS~eEIAe~LGIS~e~Vk~ 407 (460)
...+|..+..+|..+.|-..|..+||+..|++..++-.
T Consensus 14 ~r~~Il~aA~~lf~~~G~~~t~~~IA~~agvs~~tlY~ 51 (196)
T 2qwt_A 14 NRARVLEVAYDTFAAEGLGVPMDEIARRAGVGAGTVYR 51 (196)
T ss_dssp HHHHHHHHHHHHHHHTCTTSCHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHH
Confidence 34567777777777777788999999999999998854
No 97
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=33.75 E-value=1.5e+02 Score=25.97 Aligned_cols=40 Identities=25% Similarity=0.243 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhC----------CCCCHHHHHHHhCCCHHHHHHHHhC
Q 012567 372 YRVKEARKQLYSENG----------RHPNNEEVAEATGLSMKRLHAVLLS 411 (460)
Q Consensus 372 ~kl~ka~~~L~~~~g----------r~pS~eEIAe~LGIS~e~Vk~~l~~ 411 (460)
.++......+....| ...|.++||..+|++.++|...++.
T Consensus 141 ~Rl~~~L~~l~~~~g~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~ 190 (220)
T 2fmy_A 141 LRLAEFLVQAAMDTGLKVPQGIKLELGLNTEEIALMLGTTRQTVSVLLND 190 (220)
T ss_dssp HHHHHHHHHHHHHHCEEETTEEEEECSSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHH
Confidence 344445555555444 3568999999999999999888763
No 98
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=33.64 E-value=1e+02 Score=22.70 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
.+.|..++|+.+|++..+|..+..
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e~ 45 (84)
T 2ef8_A 22 ASLSQSELAIFLGLSQSDISKIES 45 (84)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHc
Confidence 468999999999999999998876
No 99
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=33.63 E-value=27 Score=26.88 Aligned_cols=25 Identities=12% Similarity=0.058 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHhC
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLLS 411 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~~ 411 (460)
.-.|.+|.|+.|||+..++..+.+.
T Consensus 15 ~~LTi~EaAeylgIg~~~l~~L~~~ 39 (70)
T 1y6u_A 15 YTLTIEEASKYFRIGENKLRRLAEE 39 (70)
T ss_dssp SEEEHHHHHHHTCSCHHHHHHHHHH
T ss_pred ceeCHHHHHHHHCcCHHHHHHHHHc
Confidence 4568999999999999999999875
No 100
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=33.39 E-value=62 Score=25.26 Aligned_cols=25 Identities=8% Similarity=0.139 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 386 GRHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 386 gr~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
....+..|||+.+|+|..+|+..+.
T Consensus 14 ~g~vsv~eLa~~l~VS~~TIRrdL~ 38 (78)
T 1xn7_A 14 RGRMEAAQISQTLNTPQPMINAMLQ 38 (78)
T ss_dssp SCSBCHHHHHHHTTCCHHHHHHHHH
T ss_pred cCCCcHHHHHHHHCcCHHHHHHHHH
Confidence 3467899999999999999998775
No 101
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=33.37 E-value=52 Score=26.66 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=21.2
Q ss_pred CCHHHHHHHhCCCHHHHHHHHhC
Q 012567 389 PNNEEVAEATGLSMKRLHAVLLS 411 (460)
Q Consensus 389 pS~eEIAe~LGIS~e~Vk~~l~~ 411 (460)
++..+||+.+|+|..+|...+..
T Consensus 21 ~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 21 KTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHcC
Confidence 89999999999999999998863
No 102
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=33.35 E-value=74 Score=26.20 Aligned_cols=26 Identities=12% Similarity=0.057 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHhC
Q 012567 386 GRHPNNEEVAEATGLSMKRLHAVLLS 411 (460)
Q Consensus 386 gr~pS~eEIAe~LGIS~e~Vk~~l~~ 411 (460)
.++.|.+++|+.+||+...|..+..-
T Consensus 18 ~~glSq~eLA~~~gis~~~is~iE~G 43 (112)
T 2wus_R 18 ERRITLLDASLFTNINPSKLKRIEEG 43 (112)
T ss_dssp TTTCCHHHHHHHSSCCHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 46789999999999999999888763
No 103
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=33.29 E-value=43 Score=25.24 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHhCCCCCcccc
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLD 419 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~~ar~~lSLD 419 (460)
++.|..++|+.+||+..+|..+..--+...+++
T Consensus 22 ~gltq~elA~~~gis~~~is~~E~G~~~~p~~~ 54 (78)
T 3qq6_A 22 KGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQ 54 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTTSCCCCBHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHH
Confidence 568999999999999999998887423334444
No 104
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=32.85 E-value=74 Score=26.79 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHH
Q 012567 368 VEATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRL 405 (460)
Q Consensus 368 ~e~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~V 405 (460)
.+...+|..+..+|..+.| ...|..+||+..|+|.+++
T Consensus 6 ~~~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~ 44 (199)
T 3qbm_A 6 QETRERVVAQAAALFNVSGYAGTAISDIMAATGLEKGGI 44 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHH
T ss_pred hhHHHHHHHHHHHHHHHhCcCcCCHHHHHHHhCCCccHH
No 105
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=32.74 E-value=2.5e+02 Score=24.47 Aligned_cols=25 Identities=4% Similarity=0.122 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHhC
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLLS 411 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~~ 411 (460)
.+.+..+||+.||++..+|..++..
T Consensus 157 ~G~s~~~Ia~~l~is~~tv~r~l~~ 181 (183)
T 1gdt_A 157 QGLGASHISKTMNIARSTVYKVINE 181 (183)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 4679999999999999999988764
No 106
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=32.73 E-value=71 Score=27.47 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHHH
Q 012567 370 ATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHAV 408 (460)
Q Consensus 370 ~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~~ 408 (460)
...+|.++..+|..+.| ...|..+||+..||+.+++-..
T Consensus 10 ~r~~Il~aA~~lf~~~G~~~~t~~~Ia~~Agvs~gt~Y~y 49 (204)
T 3anp_C 10 RRERIFRAAMELFRNRGFQETTATEIAKAAHVSRGTFFNY 49 (204)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccccHHHHHHHcCCchHHHHHH
Confidence 34567777777777777 5789999999999999988543
No 107
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=32.73 E-value=1.1e+02 Score=24.97 Aligned_cols=24 Identities=13% Similarity=0.057 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
...+..|||+.+|++..+|...+.
T Consensus 50 ~~~t~~eLa~~l~~~~~~vs~~l~ 73 (143)
T 3oop_A 50 EPISQKEIALWTKKDTPTVNRIVD 73 (143)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHhhHHHHHH
Confidence 467899999999999999988775
No 108
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=32.69 E-value=50 Score=28.48 Aligned_cols=39 Identities=13% Similarity=0.206 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHHH
Q 012567 370 ATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHAV 408 (460)
Q Consensus 370 ~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~~ 408 (460)
...+|.++..+|..+.| ...|..+||+..|++.+++-..
T Consensus 11 ~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~Agvskgt~Y~y 50 (197)
T 2f07_A 11 KYEKILQAAIEVISEKGLDKASISDIVKKAGTAQGTFYLY 50 (197)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchHHHHh
Confidence 34566677777777777 6789999999999999998654
No 109
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=32.05 E-value=1e+02 Score=22.99 Aligned_cols=24 Identities=13% Similarity=0.111 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
++.|..++|+.+|++..+|..+..
T Consensus 24 ~glsq~~lA~~~gis~~~i~~~e~ 47 (88)
T 2wiu_B 24 NGWTQSELAKKIGIKQATISNFEN 47 (88)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHc
Confidence 468999999999999999999887
No 110
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=31.84 E-value=62 Score=27.25 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHH
Q 012567 372 YRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHA 407 (460)
Q Consensus 372 ~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~ 407 (460)
.+|.++..+|..+.| ...|..+||+..|+|.+++-.
T Consensus 5 ~~Il~aA~~lf~~~Gy~~~s~~~Ia~~agvskgtlY~ 41 (179)
T 2eh3_A 5 ERILEVSKELFFEKGYQGTSVEEIVKRANLSKGAFYF 41 (179)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccCCHHHHHHHhCCCcHHHHH
Confidence 456666667777777 678999999999999998843
No 111
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=31.84 E-value=77 Score=26.90 Aligned_cols=40 Identities=10% Similarity=0.191 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHH
Q 012567 368 VEATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHA 407 (460)
Q Consensus 368 ~e~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~ 407 (460)
.+...+|..+..+|..+.| ...|..+||+..|++..++-.
T Consensus 11 ~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 51 (202)
T 3lwj_A 11 KERRQKILTCSLDLFIEKGYYNTSIRDIIALSEVGTGTFYN 51 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchhHHH
Confidence 3445567777777777778 578999999999999998854
No 112
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=31.82 E-value=62 Score=27.59 Aligned_cols=37 Identities=22% Similarity=0.335 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHH
Q 012567 371 TYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHA 407 (460)
Q Consensus 371 i~kl~ka~~~L~~~~gr~pS~eEIAe~LGIS~e~Vk~ 407 (460)
..+|..+..+|..+.|-..|..+||+..|++.+++-.
T Consensus 17 r~~Il~aA~~lf~~~G~~~s~~~IA~~agvs~~tlY~ 53 (194)
T 2q24_A 17 RDKILAAAVRVFSEEGLDAHLERIAREAGVGSGTLYR 53 (194)
T ss_dssp HHHHHHHHHHHHHHHCTTCCHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcCCCHHHHHHHhCCChHHHHH
Confidence 4556677777777777559999999999999998854
No 113
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=31.79 E-value=74 Score=25.85 Aligned_cols=56 Identities=11% Similarity=-0.019 Sum_probs=32.1
Q ss_pred HHHHHHccCCCCCcccHHhHHHHHHHHHHhhcCCCCCCchHhHHHHHHHHHHHHHhh
Q 012567 299 ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 355 (460)
Q Consensus 299 ~~IAkry~~~g~d~eDLiQEG~IGLirAiekFDp~kG~rFSTYA~~wIr~aI~~~Lr 355 (460)
..++.......+.++||.+.-.+.--.--..|... |..|..|+..+-.+.....|.
T Consensus 13 ~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~-G~s~~~~~~~~Rl~~A~~lL~ 68 (120)
T 3mkl_A 13 CTVINNNIAHEWTLARIASELLMSPSLLKKKLREE-ETSYSQLLTECRMQRALQLIV 68 (120)
T ss_dssp HHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHH
Confidence 33333333446778888776555544444555555 777877776655555555553
No 114
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=31.36 E-value=1.5e+02 Score=24.05 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 386 GRHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 386 gr~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
+...+..+||+.+|++..+|...+.
T Consensus 50 ~~~~t~~~la~~l~~s~~~vs~~l~ 74 (146)
T 2fbh_A 50 RDSPTQRELAQSVGVEGPTLARLLD 74 (146)
T ss_dssp SSCCBHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHH
Confidence 4567999999999999999988876
No 115
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=31.35 E-value=79 Score=26.94 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHHH
Q 012567 370 ATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHAV 408 (460)
Q Consensus 370 ~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~~ 408 (460)
...+|..+..+|..+.| ...|..+||+..|++.+++-..
T Consensus 15 ~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 54 (220)
T 3lhq_A 15 TRQHILDVALRLFSQQGVSATSLAEIANAAGVTRGAIYWH 54 (220)
T ss_dssp HHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCceeehhh
Confidence 44566677777777777 6689999999999999988543
No 116
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=31.33 E-value=1.3e+02 Score=26.07 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=21.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHhC
Q 012567 388 HPNNEEVAEATGLSMKRLHAVLLS 411 (460)
Q Consensus 388 ~pS~eEIAe~LGIS~e~Vk~~l~~ 411 (460)
..|.++||..+|++.++|..++..
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~ 192 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRY 192 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHH
Confidence 568999999999999999888763
No 117
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=31.32 E-value=63 Score=27.05 Aligned_cols=38 Identities=11% Similarity=0.267 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHH
Q 012567 370 ATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHA 407 (460)
Q Consensus 370 ~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~ 407 (460)
...+|..+..+|..+.| ...|..+||+..|++.+++-.
T Consensus 9 ~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 47 (194)
T 2g7s_A 9 KADDILQCARTLIIRGGYNSFSYADISQVVGIRNASIHH 47 (194)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchHHHH
Confidence 44566667677777777 678999999999999998854
No 118
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=31.10 E-value=59 Score=27.35 Aligned_cols=44 Identities=7% Similarity=0.167 Sum_probs=0.0
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHH
Q 012567 362 RLPFHMVEATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRL 405 (460)
Q Consensus 362 riP~~~~e~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~V 405 (460)
+.+........+|..+..+|..+.| ...|..+||+..|+|..++
T Consensus 3 ~~~~~~~~~r~~Il~aa~~lf~~~G~~~~t~~~IA~~agvs~~tl 47 (197)
T 3rd3_A 3 HMKTSYDDTRQHLLDTGYRIMAVKGFSGVGLNEILQSAGVPKGSF 47 (197)
T ss_dssp -------CHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHH
T ss_pred CCcchhHhHHHHHHHHHHHHHHHCCcccCCHHHHHHHhCCChhhH
No 119
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=31.07 E-value=82 Score=23.65 Aligned_cols=48 Identities=15% Similarity=0.053 Sum_probs=30.1
Q ss_pred CHHHHHHHhCCCHHHHHHHHhCCCCCcccccc--cccCCCCCcccccccC
Q 012567 390 NNEEVAEATGLSMKRLHAVLLSPKAPRSLDQK--IGINQNLKPSVCFILN 437 (460)
Q Consensus 390 S~eEIAe~LGIS~e~Vk~~l~~ar~~lSLD~~--v~~e~d~tl~Eli~D~ 437 (460)
|..++|+.+||+..+|..+.+--....+++.. +..--+.++.+++...
T Consensus 29 sq~~lA~~~gis~~~is~~E~g~~~~p~~~~l~~ia~~l~v~~~~l~~~~ 78 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKIETGRIATPAFFTIAAVARVLDLSLDDVAAVV 78 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCCSSCBHHHHHHHHHHTTCCHHHHHTTC
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCCCCCHHHHHHHHHHhCCCHHHHhccc
Confidence 89999999999999999887733213444432 1222244555555443
No 120
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=31.06 E-value=75 Score=27.24 Aligned_cols=38 Identities=11% Similarity=0.113 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHH
Q 012567 370 ATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHA 407 (460)
Q Consensus 370 ~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~ 407 (460)
...+|..+...|..+.| ...|..+||+..|++.+++-.
T Consensus 13 tr~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 51 (189)
T 3vp5_A 13 KRNRVYDACLNEFQTHSFHEAKIMHIVKALDIPRGSFYQ 51 (189)
T ss_dssp HHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCcccccHHHHHHHhCCChHHHHH
Confidence 34556667777777777 578999999999999988853
No 121
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=31.03 E-value=32 Score=27.62 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=23.6
Q ss_pred hCCCCCHHHHHHHhCCCHHHHHHHHhC
Q 012567 385 NGRHPNNEEVAEATGLSMKRLHAVLLS 411 (460)
Q Consensus 385 ~gr~pS~eEIAe~LGIS~e~Vk~~l~~ 411 (460)
.|..++..+||+.+|+|..+|...+..
T Consensus 30 ~g~~~s~~eLa~~lgvs~~tV~~~L~~ 56 (110)
T 1q1h_A 30 KGTEMTDEEIANQLNIKVNDVRKKLNL 56 (110)
T ss_dssp HCSCBCHHHHHHTTTSCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 365689999999999999999998863
No 122
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=30.98 E-value=47 Score=27.89 Aligned_cols=36 Identities=14% Similarity=0.287 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHH
Q 012567 371 TYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLH 406 (460)
Q Consensus 371 i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk 406 (460)
..+|.++..+|..+.| ...|..+||+..|++.+++-
T Consensus 12 r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y 48 (196)
T 3col_A 12 QVKIQDAVAAIILAEGPAGVSTTKVAKRVGIAQSNVY 48 (196)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHhcCcccCCHHHHHHHhCCcHHHHH
Confidence 4456666667777777 57999999999999998874
No 123
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=30.97 E-value=83 Score=26.83 Aligned_cols=41 Identities=22% Similarity=0.228 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHHH
Q 012567 368 VEATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHAV 408 (460)
Q Consensus 368 ~e~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~~ 408 (460)
.+...+|.++...|..+.| ...|..+||+..|++.+++-..
T Consensus 17 ~~~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~ 58 (212)
T 1pb6_A 17 SAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYY 58 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHCCChhHHHHh
Confidence 3445667777777777777 6889999999999999988543
No 124
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=30.88 E-value=43 Score=24.40 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
.+.|..++|+.+|++..+|..+..
T Consensus 22 ~g~s~~~lA~~~gis~~~i~~~e~ 45 (76)
T 3bs3_A 22 KQRTNRWLAEQMGKSENTISRWCS 45 (76)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 468999999999999999998876
No 125
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=30.86 E-value=2.2e+02 Score=24.05 Aligned_cols=71 Identities=8% Similarity=-0.005 Sum_probs=48.2
Q ss_pred cC-CCCcHHHHHHHhCCCHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHccCCCCCcccHHhHHHHHHHHH
Q 012567 256 CG-GSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 326 (460)
Q Consensus 256 ~g-~~pt~~ewA~a~g~de~~L~~~l~~G~~A~e~LI~~nlrLV~~IAkry~~~g~d~eDLiQEG~IGLirA 326 (460)
.| ...|..+.|+++|++...+-.-...-.+.+..++..+...+..........+.+..+.+...+..++..
T Consensus 30 ~G~~~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 101 (212)
T 3knw_A 30 KGFVGVGLQEILKTSGVPKGSFYHYFESKEAFGCELLKHYISDYQIRLNQLWTTETSARDKLMNYLQCWVKD 101 (212)
T ss_dssp HCSTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHC
T ss_pred cCCccCCHHHHHHHhCCChHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHH
Confidence 35 468999999999999988887777667777777777666666555555444555555555544444444
No 126
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=30.81 E-value=75 Score=26.84 Aligned_cols=37 Identities=14% Similarity=0.317 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHH
Q 012567 369 EATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRL 405 (460)
Q Consensus 369 e~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~V 405 (460)
+...+|..+...|..+.| ...|..+||+..|+|.+++
T Consensus 17 ~~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~ 54 (206)
T 3kz9_A 17 KRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATV 54 (206)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcccccHHHHHHHhCCCHHHH
No 127
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=30.80 E-value=66 Score=27.33 Aligned_cols=37 Identities=30% Similarity=0.432 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHHH
Q 012567 372 YRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHAV 408 (460)
Q Consensus 372 ~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~~ 408 (460)
.+|.++..+|..+.| ...|.++||+..|++.+++-..
T Consensus 6 ~~Il~aA~~lf~~~G~~~~s~~~IA~~agvsk~t~Y~~ 43 (190)
T 3vpr_A 6 DRILEEAAKLFTEKGYEATSVQDLAQALGLSKAALYHH 43 (190)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHH
Confidence 455566666777777 5689999999999999988543
No 128
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=30.79 E-value=58 Score=25.66 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.7
Q ss_pred CCCHHHHHHHhCCCHH-HHHHHHh
Q 012567 388 HPNNEEVAEATGLSMK-RLHAVLL 410 (460)
Q Consensus 388 ~pS~eEIAe~LGIS~e-~Vk~~l~ 410 (460)
..+..+||+.|||+.. .|+..+.
T Consensus 25 ~~ta~eiA~~Lgit~~~aVr~hL~ 48 (79)
T 1xmk_A 25 DSSALNLAKNIGLTKARDINAVLI 48 (79)
T ss_dssp CEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred CcCHHHHHHHcCCCcHHHHHHHHH
Confidence 5688999999999999 9998876
No 129
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=30.78 E-value=82 Score=26.88 Aligned_cols=40 Identities=10% Similarity=0.130 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHHH
Q 012567 369 EATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHAV 408 (460)
Q Consensus 369 e~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~~ 408 (460)
....+|..+..+|..+.| ...|..+||+..|++.+++-..
T Consensus 14 ~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~ 54 (212)
T 3knw_A 14 AKRQHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFYHY 54 (212)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCChHHHHHH
Confidence 344566677777777777 6899999999999999988543
No 130
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=30.70 E-value=55 Score=27.24 Aligned_cols=37 Identities=14% Similarity=0.112 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHH
Q 012567 370 ATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLH 406 (460)
Q Consensus 370 ~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk 406 (460)
...+|..+..+|..+.| ...|..+||+..||+.+++-
T Consensus 13 tr~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y 50 (177)
T 3kkc_A 13 TKVAIYNAFISLLQENDYSKITVQDVIGLANVGRSTFY 50 (177)
T ss_dssp HHHHHHHHHHHHTTTSCTTTCCHHHHHHHHCCCHHHHT
T ss_pred HHHHHHHHHHHHHHhCChhHhhHHHHHHHhCCcHhhHH
Confidence 34556677777777777 57899999999999988873
No 131
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=30.67 E-value=1.2e+02 Score=25.01 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
...+..+||+.+|++..+|...+.
T Consensus 60 ~~~t~~ela~~l~~s~~tvs~~l~ 83 (153)
T 2pex_A 60 DERSVSEIGERLYLDSATLTPLLK 83 (153)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CCcCHHHHHHHhCCCcccHHHHHH
Confidence 457999999999999999988875
No 132
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=30.66 E-value=37 Score=27.82 Aligned_cols=22 Identities=5% Similarity=0.111 Sum_probs=20.7
Q ss_pred CCHHHHHHHhCCCHHHHHHHHh
Q 012567 389 PNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 389 pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
|+..+||+.+|+|..+|+.++.
T Consensus 34 Ps~~~La~~~~vSr~tvr~al~ 55 (113)
T 3tqn_A 34 PSIRKISTEYQINPLTVSKAYQ 55 (113)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHH
Confidence 6999999999999999999986
No 133
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=30.64 E-value=51 Score=30.73 Aligned_cols=50 Identities=10% Similarity=0.132 Sum_probs=38.1
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHhC
Q 012567 362 RLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLS 411 (460)
Q Consensus 362 riP~~~~e~i~kl~ka~~~L~~~~gr~pS~eEIAe~LGIS~e~Vk~~l~~ 411 (460)
++|......+....+..+.|..+.-...|.+|||+.+|++..+|++=+.+
T Consensus 6 ~ip~~ti~RL~~Y~r~l~~l~~~g~~~isS~ela~~~gv~~~qiRkDls~ 55 (212)
T 3keo_A 6 SIPKATAKRLSLYYRIFKRFNTDGIEKASSKQIADALGIDSATVRRDFSY 55 (212)
T ss_dssp CCCHHHHTTHHHHHHHHHHHHHTTCCEECHHHHHHHHTSCHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHCCCeEECHHHHHHHHCCCHHHHHHHHHH
Confidence 35666656666666777777766556679999999999999999987764
No 134
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=30.53 E-value=96 Score=26.57 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 386 GRHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 386 gr~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
+...+..|||+.+|++..+|..++.
T Consensus 66 ~~~~t~~eLa~~l~i~~~tvs~~l~ 90 (166)
T 3deu_A 66 PPDQSQIQLAKAIGIEQPSLVRTLD 90 (166)
T ss_dssp CSSEEHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHhhHHHHHH
Confidence 4568999999999999999988775
No 135
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=30.46 E-value=37 Score=28.68 Aligned_cols=24 Identities=13% Similarity=0.127 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
+-|+..++|+.+|+|..+|+.++.
T Consensus 37 ~LPser~La~~~gVSr~tVReAl~ 60 (134)
T 4ham_A 37 KILSIREFASRIGVNPNTVSKAYQ 60 (134)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCccHHHHHHHHCCCHHHHHHHHH
Confidence 347999999999999999999986
No 136
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=30.42 E-value=93 Score=28.91 Aligned_cols=78 Identities=17% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHhHHHHHhhhcCCCCcHHHHHHHhCCCHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHccCCCCCcccHHhHHHHHH
Q 012567 244 KLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 323 (460)
Q Consensus 244 ~le~~~~~L~~~~g~~pt~~ewA~a~g~de~~L~~~l~~G~~A~e~LI~~nlrLV~~IAkry~~~g~d~eDLiQEG~IGL 323 (460)
.+.++..-+.+....+++..++|+.+|++...|.+.
T Consensus 4 ~~~~~~~~i~~~~~~~~~~~~la~~~~~s~~~l~r~-------------------------------------------- 39 (292)
T 1d5y_A 4 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRM-------------------------------------------- 39 (292)
T ss_dssp HHHHHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHH--------------------------------------------
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHCcCHHHHHHH--------------------------------------------
Q ss_pred HHHHhhcCCCCCCchHhHHHHHHHHHHHHHhhhcCcccccCcchHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCC
Q 012567 324 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLS 401 (460)
Q Consensus 324 irAiekFDp~kG~rFSTYA~~wIr~aI~~~Lrk~~r~iriP~~~~e~i~kl~ka~~~L~~~~gr~pS~eEIAe~LGIS 401 (460)
|...-|..|..|+...--+.....|+... .+..|||..+|.+
T Consensus 40 ------f~~~~g~s~~~~~~~~Rl~~a~~~L~~~~------------------------------~~i~~ia~~~Gf~ 81 (292)
T 1d5y_A 40 ------FKDVTGHAIGAYIRARRLSKSAVALRLTA------------------------------RPILDIALQYRFD 81 (292)
T ss_dssp ------HHHHHSSCHHHHHHHHHHHHHHHHHHHCC------------------------------CCHHHHHHHTTCS
T ss_pred ------HHHHHCcCHHHHHHHHHHHHHHHHHhcCC------------------------------CCHHHHHHHcCCC
No 137
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=30.39 E-value=48 Score=27.82 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHHH
Q 012567 370 ATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHAV 408 (460)
Q Consensus 370 ~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~~ 408 (460)
...+|..+..+|..+.| ...|..+||+..|+|.+++-..
T Consensus 11 ~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~ 50 (191)
T 3on4_A 11 TKERILAVAEALIQKDGYNAFSFKDIATAINIKTASIHYH 50 (191)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchhhhc
Confidence 44566667777777777 5799999999999999988543
No 138
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=30.33 E-value=78 Score=27.42 Aligned_cols=39 Identities=18% Similarity=0.232 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHHH
Q 012567 370 ATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHAV 408 (460)
Q Consensus 370 ~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~~ 408 (460)
...+|.++..+|..+.| ...|.++||+..|+|..++-..
T Consensus 13 ~r~~Il~aA~~lf~~~G~~~ts~~~IA~~aGvsk~tlY~~ 52 (211)
T 3bhq_A 13 KDREIIQAATAAFISKGYDGTSMEEIATKAGASKQTVYKH 52 (211)
T ss_dssp HHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHH
Confidence 34566677777777777 6689999999999999988543
No 139
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=30.28 E-value=43 Score=23.68 Aligned_cols=23 Identities=9% Similarity=0.042 Sum_probs=21.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHh
Q 012567 388 HPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 388 ~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
+.|..++|+.+|++..+|..+..
T Consensus 18 g~s~~~lA~~~gis~~~i~~~e~ 40 (68)
T 2r1j_L 18 KIRQAALGKMVGVSNVAISQWER 40 (68)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHc
Confidence 57899999999999999998876
No 140
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=30.25 E-value=78 Score=27.29 Aligned_cols=37 Identities=22% Similarity=0.344 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHH
Q 012567 370 ATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLH 406 (460)
Q Consensus 370 ~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk 406 (460)
...+|..+..+|..+.| ...|..+||+..|+|.+++-
T Consensus 13 ~r~~Il~aA~~lf~~~Gy~~ts~~~IA~~agvs~gtlY 50 (205)
T 1rkt_A 13 RQAEILEAAKTVFKRKGFELTTMKDVVEESGFSRGGVY 50 (205)
T ss_dssp HHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCCcchhh
Confidence 34566777777777778 67899999999999998874
No 141
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=30.15 E-value=43 Score=24.46 Aligned_cols=24 Identities=8% Similarity=-0.047 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
.+.|..++|+.+|++..+|..+..
T Consensus 20 ~glsq~~lA~~~gis~~~is~~e~ 43 (73)
T 3omt_A 20 KGKTNLWLTETLDKNKTTVSKWCT 43 (73)
T ss_dssp HTCCHHHHHHHTTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 367899999999999999999886
No 142
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=30.12 E-value=1e+02 Score=25.43 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 386 GRHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 386 gr~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
+...+..|||+.+|+|...|..++.
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~il~ 48 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQLVS 48 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHHHH
T ss_pred CCcCCHHHHHHHHCcCHHHHHHHHH
Confidence 4567999999999999999999876
No 143
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=30.01 E-value=28 Score=26.37 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=21.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHhC
Q 012567 388 HPNNEEVAEATGLSMKRLHAVLLS 411 (460)
Q Consensus 388 ~pS~eEIAe~LGIS~e~Vk~~l~~ 411 (460)
.+|..+||+.+|+|..+|..+++-
T Consensus 9 ~~t~~diA~~aGVS~sTVSr~ln~ 32 (67)
T 2l8n_A 9 AATMKDVALKAKVSTATVSRALMN 32 (67)
T ss_dssp CCCHHHHHHHTTCCHHHHHHTTTC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHcC
Confidence 479999999999999999988763
No 144
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=29.93 E-value=66 Score=27.73 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHHH
Q 012567 368 VEATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHAV 408 (460)
Q Consensus 368 ~e~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~~ 408 (460)
.+...+|..+...|..+.| ...|..+||+..|++.+++-..
T Consensus 16 ~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~ 57 (218)
T 3gzi_A 16 TQNRDKLILAARNLFIERPYAQVSIREIASLAGTDPGLIRYY 57 (218)
T ss_dssp HHHHHHHHHHHHHHHHTSCCSCCCHHHHHHHHTSCTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCCcCCHHHHHHHhCCCHHHHHHH
Confidence 3456677777778888878 5789999999999999988654
No 145
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=29.93 E-value=1.4e+02 Score=24.46 Aligned_cols=23 Identities=9% Similarity=-0.000 Sum_probs=20.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHh
Q 012567 388 HPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 388 ~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
..+..+||+.+|++..+|...+.
T Consensus 56 ~~t~~ela~~l~~~~~tvs~~l~ 78 (150)
T 2rdp_A 56 DLTVGELSNKMYLACSTTTDLVD 78 (150)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCchhHHHHHH
Confidence 57999999999999999988876
No 146
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=29.73 E-value=1.2e+02 Score=22.95 Aligned_cols=24 Identities=13% Similarity=-0.002 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
.+.|.+++|+.+|++..+|..+..
T Consensus 26 ~gltq~elA~~~gis~~~is~~E~ 49 (86)
T 3eus_A 26 AGLTQADLAERLDKPQSFVAKVET 49 (86)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHC
Confidence 568999999999999999998876
No 147
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=29.69 E-value=82 Score=27.12 Aligned_cols=39 Identities=21% Similarity=0.347 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHH
Q 012567 369 EATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHA 407 (460)
Q Consensus 369 e~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~ 407 (460)
....+|.++..+|..+.| ...|.++||+..|++.+++-.
T Consensus 14 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~tlY~ 53 (204)
T 2ibd_A 14 GRRTELLDIAATLFAERGLRATTVRDIADAAGILSGSLYH 53 (204)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHTTSCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCchhHHH
Confidence 344567777777777777 678999999999999988843
No 148
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=29.57 E-value=72 Score=27.05 Aligned_cols=35 Identities=14% Similarity=0.329 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHH
Q 012567 373 RVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHA 407 (460)
Q Consensus 373 kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~ 407 (460)
+|..+..++..+.| ...|..+||+..|++.+++-.
T Consensus 11 ~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~ 46 (192)
T 2zcm_A 11 KIIDNAITLFSEKGYDGTTLDDISKSVNIKKASLYY 46 (192)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHhCCChHHHHH
Confidence 55566666666667 678999999999999998854
No 149
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=29.54 E-value=90 Score=26.33 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHH
Q 012567 368 VEATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRL 405 (460)
Q Consensus 368 ~e~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~V 405 (460)
.....+|..+..+|..+.| ...|..+||+..|++.+++
T Consensus 13 ~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~ 51 (203)
T 3f1b_A 13 AVREQQMLDAAVDVFSDRGFHETSMDAIAAKAEISKPML 51 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccccHHHHHHHhCCchHHH
No 150
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=29.53 E-value=85 Score=26.99 Aligned_cols=38 Identities=21% Similarity=0.292 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHH
Q 012567 369 EATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLH 406 (460)
Q Consensus 369 e~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk 406 (460)
....+|.++..+|..+.| ...|..+||+..|++..++-
T Consensus 11 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t~Y 49 (212)
T 2ras_A 11 AMRARLVDVAQAIVEERGGAGLTLSELAARAGISQANLS 49 (212)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHTSCHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCcccCcHHHHHHHhCCCHHHHH
Confidence 344566677777777777 68899999999999998873
No 151
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=29.40 E-value=73 Score=26.98 Aligned_cols=41 Identities=24% Similarity=0.256 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHHH
Q 012567 368 VEATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHAV 408 (460)
Q Consensus 368 ~e~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~~ 408 (460)
.+...+|.++..+|..+.| ...|..+||+..|+|..++-..
T Consensus 16 ~~~r~~Il~aa~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 57 (208)
T 3cwr_A 16 AVVRESIVGAAQRLLSSGGAAAMTMEGVASEAGIAKKTLYRF 57 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHhccHHHHHHHhCCCHHHHHHH
Confidence 3455667777777777777 5789999999999999988543
No 152
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=29.33 E-value=1.2e+02 Score=24.60 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
++.|.+++|+.+|++..+|..+-.
T Consensus 48 ~glTQ~eLA~~~gvs~~~is~~E~ 71 (101)
T 4ghj_A 48 RDLTQSEVAEIAGIARKTVLNAEK 71 (101)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHcCCCHHHHHHHHC
Confidence 579999999999999999998875
No 153
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=29.33 E-value=23 Score=26.33 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=20.6
Q ss_pred CCHHHHHHHhCCCHHHHHHHHhCC
Q 012567 389 PNNEEVAEATGLSMKRLHAVLLSP 412 (460)
Q Consensus 389 pS~eEIAe~LGIS~e~Vk~~l~~a 412 (460)
++..|+|+.||||..++.......
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~G 26 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQG 26 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTTT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHCC
Confidence 467899999999999999887653
No 154
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=29.26 E-value=73 Score=27.25 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHHH
Q 012567 369 EATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHAV 408 (460)
Q Consensus 369 e~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~~ 408 (460)
+...+|..+..+|..+.| ...|..+||+..|++..++-..
T Consensus 8 ~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~ 48 (199)
T 2o7t_A 8 KRREHIITTTCNLYRTHHHDSLTMENIAEQAGVGVATLYRN 48 (199)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCccCCHHHHHHHhCCCHHHHHHH
Confidence 344566777777777777 5679999999999999988543
No 155
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=29.15 E-value=64 Score=28.77 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHH
Q 012567 372 YRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLH 406 (460)
Q Consensus 372 ~kl~ka~~~L~~~~gr~pS~eEIAe~LGIS~e~Vk 406 (460)
.+|..+-.+|..+.| ..|..+||+.+|++..++-
T Consensus 14 ~~Il~aA~~l~~~~G-~~s~~~IA~~aGvs~~tlY 47 (213)
T 2g7g_A 14 ERIAEAALELVDRDG-DFRMPDLARHLNVQVSSIY 47 (213)
T ss_dssp HHHHHHHHHHHHHHS-SCCHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHhCCCHhHHH
Confidence 456667777777889 9999999999999988873
No 156
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=28.99 E-value=83 Score=27.30 Aligned_cols=38 Identities=18% Similarity=0.324 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHH
Q 012567 370 ATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHA 407 (460)
Q Consensus 370 ~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~ 407 (460)
...+|..+-.+|..+.| ...|..+||+..|+|.+++-.
T Consensus 12 ~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgtlY~ 50 (210)
T 2wui_A 12 TRDGILDAAERVFLEKGVGTTAMADLADAAGVSRGAVYG 50 (210)
T ss_dssp HHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccccCHHHHHHHhCCCHHHHHH
Confidence 34566677777777777 568999999999999998843
No 157
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=28.99 E-value=71 Score=27.24 Aligned_cols=42 Identities=12% Similarity=0.097 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHH
Q 012567 364 PFHMVEATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRL 405 (460)
Q Consensus 364 P~~~~e~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~V 405 (460)
+........+|..+..+|..+.| ...|..+||+..|++.+++
T Consensus 11 ~~~~~~~r~~Il~aa~~lf~~~G~~~~t~~~Ia~~agvs~~t~ 53 (213)
T 2qtq_A 11 NLETPGARDLLLQTASNIMREGDVVDISLSELSLRSGLNSALV 53 (213)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHCCCHHHH
T ss_pred CCCChhHHHHHHHHHHHHHHHcCcccccHHHHHHHhCCChhhH
No 158
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=28.99 E-value=88 Score=26.96 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHH
Q 012567 370 ATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHA 407 (460)
Q Consensus 370 ~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~ 407 (460)
...+|..+-.+|..+.| ...|..+||+..|+|.+++-.
T Consensus 11 tR~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~t~Y~ 49 (210)
T 3vib_A 11 TKEHLMLAALETFYRKGIARTSLNEIAQAAGVTRDALYW 49 (210)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHHHHH
Confidence 34566677777777778 678999999999999998854
No 159
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=28.96 E-value=1.4e+02 Score=24.13 Aligned_cols=24 Identities=8% Similarity=0.134 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
...+..+||+.+|++..+|..++.
T Consensus 46 ~~~~~~~la~~l~~s~~tvs~~l~ 69 (145)
T 2a61_A 46 GPKRPGELSVLLGVAKSTVTGLVK 69 (145)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCchhHHHHHH
Confidence 357999999999999999988876
No 160
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=28.91 E-value=1.2e+02 Score=25.14 Aligned_cols=34 Identities=12% Similarity=0.107 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHhCCCCCccccc
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQ 420 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~~ar~~lSLD~ 420 (460)
++.|.+|+|+.+|++..+|..+.+--....+++.
T Consensus 52 ~glTQ~eLA~~lGis~~~Is~iE~G~~~~~s~~~ 85 (120)
T 2o38_A 52 ARLSQAAAAARLGINQPKVSALRNYKLEGFSVER 85 (120)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTTCCTTCCHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHH
Confidence 5789999999999999999988763222455553
No 161
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=28.89 E-value=1.7e+02 Score=23.68 Aligned_cols=23 Identities=13% Similarity=0.055 Sum_probs=20.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHh
Q 012567 388 HPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 388 ~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
..+..+||+.+|++..+|...+.
T Consensus 43 ~~t~~~la~~l~~s~~~vs~~l~ 65 (144)
T 1lj9_A 43 GIIQEKIAELIKVDRTTAARAIK 65 (144)
T ss_dssp TEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHhHHHHHHH
Confidence 56899999999999999988876
No 162
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=28.72 E-value=76 Score=26.53 Aligned_cols=34 Identities=21% Similarity=0.366 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHH
Q 012567 372 YRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRL 405 (460)
Q Consensus 372 ~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~V 405 (460)
.+|..+...|..+.| ...|..+||+..|++..++
T Consensus 12 ~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~ 46 (195)
T 3ppb_A 12 QAILETALQLFVSQGFHGTSTATIAREAGVATGTL 46 (195)
T ss_dssp HHHHHHHHHHHHHTCSTTSCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHH
No 163
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=28.64 E-value=90 Score=26.68 Aligned_cols=37 Identities=14% Similarity=0.389 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHH
Q 012567 369 EATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRL 405 (460)
Q Consensus 369 e~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~V 405 (460)
....+|..+..+|..+.| ...|..+||+..|++..++
T Consensus 31 ~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~ 68 (218)
T 3dcf_A 31 DRRTQIIKVATELFREKGYYATSLDDIADRIGFTKPAI 68 (218)
T ss_dssp HHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTCCHHHH
T ss_pred chHHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCHHHH
No 164
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=28.51 E-value=61 Score=27.34 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHH
Q 012567 371 TYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHA 407 (460)
Q Consensus 371 i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~ 407 (460)
..+|..+..++..+.| ...|..+||+..|++.+++-.
T Consensus 10 r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 47 (206)
T 3dew_A 10 RSRLMEVATELFAQKGFYGVSIRELAQAAGASISMISY 47 (206)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccCcHHHHHHHhCCCHHHHHH
Confidence 3456677777777777 689999999999999999854
No 165
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=28.42 E-value=90 Score=26.73 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHH
Q 012567 370 ATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHA 407 (460)
Q Consensus 370 ~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~ 407 (460)
...+|-++-.++..+.| ...|..+||+..|+|.+++-.
T Consensus 11 ~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~gtlY~ 49 (194)
T 2nx4_A 11 RRRSITAAAWRLIAARGIEAANMRDIATEAGYTNGALSH 49 (194)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcchHHH
Confidence 34566677777777777 678999999999999998854
No 166
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=28.39 E-value=95 Score=26.76 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHH
Q 012567 369 EATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLH 406 (460)
Q Consensus 369 e~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk 406 (460)
....+|.++..+|..+.| ...|..+||+..|++.+++-
T Consensus 14 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvsk~tlY 52 (199)
T 3crj_A 14 DQTEEIMQATYRALREHGYADLTIQRIADEYGKSTAAVH 52 (199)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCChhHHh
Confidence 344566677777777777 77899999999999988873
No 167
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=28.21 E-value=34 Score=28.84 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
..||..+||+.+|++..+|..++.
T Consensus 50 ~~ps~~~LA~~l~~s~~~V~~~l~ 73 (128)
T 2vn2_A 50 LFPTPAELAERMTVSAAECMEMVR 73 (128)
T ss_dssp SSCCHHHHHHTSSSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 449999999999999999999886
No 168
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=27.91 E-value=42 Score=28.74 Aligned_cols=24 Identities=13% Similarity=0.138 Sum_probs=19.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
.+.|+.|||+.+|+|..+|...-+
T Consensus 74 ~G~syreIA~~~g~S~aTIsRv~r 97 (119)
T 3kor_A 74 QGYTYATIEQESGASTATISRVKR 97 (119)
T ss_dssp HTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHH
Confidence 458999999999999988865443
No 169
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=27.88 E-value=48 Score=24.57 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHhC
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLLS 411 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~~ 411 (460)
++.|..++|+.+|++..+|..+..-
T Consensus 14 ~glsq~~lA~~~gis~~~i~~~e~g 38 (77)
T 2k9q_A 14 LSLTAKSVAEEMGISRQQLCNIEQS 38 (77)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTC
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 3688999999999999999988763
No 170
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=27.81 E-value=51 Score=27.43 Aligned_cols=39 Identities=23% Similarity=0.261 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHHH
Q 012567 370 ATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHAV 408 (460)
Q Consensus 370 ~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~~ 408 (460)
...+|..+..+|..+.| ...|..+||+..|++..++-..
T Consensus 5 ~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 44 (170)
T 3egq_A 5 QSVRIIEAALRLYMKKPPHEVSIEEIAREAKVSKSLIFYH 44 (170)
T ss_dssp HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCccCcHHHHHHHhCCCchhHHHH
Confidence 34566677777777777 5689999999999999988543
No 171
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=27.68 E-value=49 Score=23.99 Aligned_cols=23 Identities=9% Similarity=0.042 Sum_probs=21.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHh
Q 012567 388 HPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 388 ~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
+.|..++|+.+|++..+|..+..
T Consensus 18 gls~~~lA~~~gis~~~i~~~e~ 40 (76)
T 1adr_A 18 KIRQAALGKMVGVSNVAISQWER 40 (76)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc
Confidence 57899999999999999999876
No 172
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=27.64 E-value=72 Score=27.23 Aligned_cols=38 Identities=26% Similarity=0.337 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHH
Q 012567 370 ATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHA 407 (460)
Q Consensus 370 ~i~kl~ka~~~L~~~~gr~pS~eEIAe~LGIS~e~Vk~ 407 (460)
...+|..+..+|..+.|-..|..+||+..|++..++-.
T Consensus 17 ~r~~Il~aA~~lf~~~G~~~s~~~Ia~~agvs~~t~Y~ 54 (199)
T 2rek_A 17 NYDRIIEAAAAEVARHGADASLEEIARRAGVGSATLHR 54 (199)
T ss_dssp HHHHHHHHHHHHHHHHGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCchHHHHH
Confidence 34556666666666656578999999999999998854
No 173
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=27.25 E-value=39 Score=27.51 Aligned_cols=24 Identities=13% Similarity=0.170 Sum_probs=21.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHhC
Q 012567 388 HPNNEEVAEATGLSMKRLHAVLLS 411 (460)
Q Consensus 388 ~pS~eEIAe~LGIS~e~Vk~~l~~ 411 (460)
-|+..+||+.+|+|..+|+..+..
T Consensus 43 lps~~eLa~~lgVSr~tVr~al~~ 66 (102)
T 2b0l_A 43 LLVASKIADRVGITRSVIVNALRK 66 (102)
T ss_dssp EECHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 369999999999999999998863
No 174
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=27.15 E-value=96 Score=26.69 Aligned_cols=36 Identities=11% Similarity=0.199 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHH
Q 012567 371 TYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLH 406 (460)
Q Consensus 371 i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk 406 (460)
..+|..+..+|..+.| ...|..+||+..|++..++-
T Consensus 11 r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvsk~tlY 47 (203)
T 3cdl_A 11 RESIVQAAIAEFGDRGFEITSMDRIAARAEVSKRTVY 47 (203)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCHHHHH
Confidence 3456666667777777 67899999999999998873
No 175
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=27.06 E-value=83 Score=26.47 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHH
Q 012567 372 YRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLH 406 (460)
Q Consensus 372 ~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk 406 (460)
.+|.++...|..+.| ...|..+||+..|++..++-
T Consensus 14 ~~il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y 49 (196)
T 3he0_A 14 DQILAAAEQLIAESGFQGLSMQKLANEAGVAAGTIY 49 (196)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchHH
Confidence 456666667777777 67999999999999988874
No 176
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=26.87 E-value=1e+02 Score=27.30 Aligned_cols=39 Identities=21% Similarity=0.218 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHH
Q 012567 369 EATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHA 407 (460)
Q Consensus 369 e~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~ 407 (460)
+...+|.++..+|..+.| ...|..+||+..|++..++-.
T Consensus 43 ~~r~~Il~aA~~l~~~~G~~~~tv~~IA~~AGvs~~t~Y~ 82 (229)
T 3bni_A 43 ERLTRILDACADLLDEVGYDALSTRAVALRADVPIGSVYR 82 (229)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcChhhccHHHHHHHHCCCchhHHH
Confidence 445667777777777777 568999999999999998854
No 177
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=26.75 E-value=51 Score=29.12 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
...+..|||+.+|+|..+|...+.
T Consensus 40 ~~~s~~eLA~~lglS~~tv~~rl~ 63 (171)
T 2e1c_A 40 GKAPLREISKITGLAESTIHERIR 63 (171)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 358999999999999999988875
No 178
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=26.61 E-value=1e+02 Score=25.87 Aligned_cols=25 Identities=12% Similarity=0.052 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHhC
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLLS 411 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~~ 411 (460)
...+..|||+.+|+|..+|...+..
T Consensus 18 ~~~s~~ela~~lg~s~~tv~~~l~~ 42 (144)
T 2cfx_A 18 SRLSMRELGRKIKLSPPSVTERVRQ 42 (144)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4579999999999999999988763
No 179
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=26.58 E-value=1.6e+02 Score=26.44 Aligned_cols=24 Identities=25% Similarity=0.319 Sum_probs=21.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHhC
Q 012567 388 HPNNEEVAEATGLSMKRLHAVLLS 411 (460)
Q Consensus 388 ~pS~eEIAe~LGIS~e~Vk~~l~~ 411 (460)
..|.++||..+|++.++|...+..
T Consensus 177 ~~t~~~iA~~lG~sr~tvsR~l~~ 200 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVSRVLAS 200 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHH
Confidence 468999999999999999888763
No 180
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=26.47 E-value=53 Score=25.92 Aligned_cols=32 Identities=25% Similarity=0.252 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHhCCCCCccccc
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQ 420 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~~ar~~lSLD~ 420 (460)
++.|..++|+.+||+..+|..+..- +. .+++.
T Consensus 36 ~glTq~eLA~~~GiS~~tis~iE~G-~~-~s~~~ 67 (88)
T 3t76_A 36 RDMKKGELREAVGVSKSTFAKLGKN-EN-VSLTV 67 (88)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT-CC-CCHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC-CC-cCHHH
Confidence 5789999999999999999988774 22 35543
No 181
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=26.34 E-value=48 Score=27.82 Aligned_cols=24 Identities=13% Similarity=0.104 Sum_probs=21.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHhC
Q 012567 388 HPNNEEVAEATGLSMKRLHAVLLS 411 (460)
Q Consensus 388 ~pS~eEIAe~LGIS~e~Vk~~l~~ 411 (460)
-|+..+||+.+|+|..+|+.++..
T Consensus 35 lPse~~La~~~~vSr~tvr~Al~~ 58 (126)
T 3by6_A 35 LPSVRETALQEKINPNTVAKAYKE 58 (126)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHH
Confidence 369999999999999999998863
No 182
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=26.34 E-value=77 Score=27.39 Aligned_cols=39 Identities=18% Similarity=0.299 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHH
Q 012567 369 EATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHA 407 (460)
Q Consensus 369 e~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~ 407 (460)
+...+|.++..+|..+.| ...|..+||+..|+|.+++-.
T Consensus 11 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgtlY~ 50 (210)
T 2xdn_A 11 ETRAQIIEAAERAFYKRGVARTTLADIAELAGVTRGAIYW 50 (210)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCTTHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCcHHHHHHHHCCChHHHHH
Confidence 345567777777777778 678999999999999888743
No 183
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=26.30 E-value=49 Score=27.68 Aligned_cols=24 Identities=8% Similarity=0.148 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
+-||..+||+.+|+|..+|+.++.
T Consensus 36 ~Lps~~~La~~~~vSr~tvr~Al~ 59 (125)
T 3neu_A 36 KLPSVREMGVKLAVNPNTVSRAYQ 59 (125)
T ss_dssp BCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 346899999999999999999986
No 184
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=26.25 E-value=66 Score=26.96 Aligned_cols=36 Identities=31% Similarity=0.380 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHH
Q 012567 370 ATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRL 405 (460)
Q Consensus 370 ~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~V 405 (460)
...+|..+..++..+.| ...|..+||+..|++.+++
T Consensus 8 ~r~~Il~aA~~l~~~~G~~~~s~~~IA~~agvs~~tl 44 (180)
T 2fd5_A 8 TRARILGAATQALLERGAVEPSVGEVMGAAGLTVGGF 44 (180)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCCHHHHHHHTTCCGGGG
T ss_pred CHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCccHH
Confidence 34556666667766667 5789999999999997765
No 185
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=26.02 E-value=78 Score=26.62 Aligned_cols=36 Identities=11% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHH
Q 012567 369 EATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405 (460)
Q Consensus 369 e~i~kl~ka~~~L~~~~gr~pS~eEIAe~LGIS~e~V 405 (460)
....+|..+..+|..+. ...|..+||+..|++..++
T Consensus 14 ~~r~~Il~aA~~lf~~~-~~~t~~~Ia~~agvs~~t~ 49 (190)
T 2v57_A 14 RTRRAILDAAMLVLADH-PTAALGDIAAAAGVGRSTV 49 (190)
T ss_dssp HHHHHHHHHHHHHHTTC-TTCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHc-CCCCHHHHHHHhCCCHHHH
No 186
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=25.95 E-value=95 Score=24.55 Aligned_cols=36 Identities=14% Similarity=0.214 Sum_probs=27.4
Q ss_pred hHHHHHhhhcCCCCcHHHHHHHhCCCHHHHHHHHhc
Q 012567 247 GLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 282 (460)
Q Consensus 247 ~~~~~L~~~~g~~pt~~ewA~a~g~de~~L~~~l~~ 282 (460)
++..-+.+....+++..++|+.+|+++..|.+.++.
T Consensus 6 ~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~ 41 (108)
T 3mn2_A 6 QVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQR 41 (108)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 344445566677899999999999999887766654
No 187
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=25.94 E-value=72 Score=26.73 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHH
Q 012567 372 YRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLH 406 (460)
Q Consensus 372 ~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk 406 (460)
.+|.++..+|..+.| ...|..+||+..|++..++-
T Consensus 11 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y 46 (183)
T 1zk8_A 11 QKIVETAAEIADANGVQEVTLASLAQTLGVRSPSLY 46 (183)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHT
T ss_pred HHHHHHHHHHHHhcCccccCHHHHHHHcCCCchHHH
Confidence 456666667777777 56899999999999988873
No 188
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=25.90 E-value=1.2e+02 Score=25.25 Aligned_cols=24 Identities=8% Similarity=-0.133 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
...+..+||+.+|++..+|..++.
T Consensus 65 ~~~t~~ela~~l~is~~tvs~~l~ 88 (162)
T 3cjn_A 65 DGLPIGTLGIFAVVEQSTLSRALD 88 (162)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCChhHHHHHHH
Confidence 457999999999999999988876
No 189
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=25.86 E-value=1e+02 Score=27.19 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=21.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHhC
Q 012567 388 HPNNEEVAEATGLSMKRLHAVLLS 411 (460)
Q Consensus 388 ~pS~eEIAe~LGIS~e~Vk~~l~~ 411 (460)
..|.++||..+|++.++|...+..
T Consensus 175 ~~t~~~iA~~lg~sr~tvsR~l~~ 198 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVSRVLKR 198 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHH
Confidence 468999999999999999888863
No 190
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=25.77 E-value=75 Score=26.07 Aligned_cols=23 Identities=17% Similarity=0.112 Sum_probs=20.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHh
Q 012567 388 HPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 388 ~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
..+..+||+.+|++..+|...+.
T Consensus 54 ~~~~~~la~~l~~~~~tvs~~l~ 76 (147)
T 1z91_A 54 TLTVKKMGEQLYLDSGTLTPMLK 76 (147)
T ss_dssp EEEHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCcCcHHHHHH
Confidence 57899999999999999988775
No 191
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=25.70 E-value=91 Score=26.91 Aligned_cols=39 Identities=28% Similarity=0.273 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHH
Q 012567 369 EATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHA 407 (460)
Q Consensus 369 e~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~ 407 (460)
+...+|..+..+|..+.| ...|..+||+..|++..++-.
T Consensus 23 ~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y~ 62 (214)
T 2zb9_A 23 EVRAEVLHAVGELLLTEGTAQLTFERVARVSGVSKTTLYK 62 (214)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHH
Confidence 345667777777777777 688999999999999998854
No 192
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=25.66 E-value=28 Score=27.81 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=22.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHhCCC
Q 012567 388 HPNNEEVAEATGLSMKRLHAVLLSPK 413 (460)
Q Consensus 388 ~pS~eEIAe~LGIS~e~Vk~~l~~ar 413 (460)
-|+..+||+.+|+|..+|+..+..-.
T Consensus 35 lps~~eLa~~~~vSr~tvr~al~~L~ 60 (102)
T 1v4r_A 35 LPSVADIRAQFGVAAKTVSRALAVLK 60 (102)
T ss_dssp CCCHHHHHHHSSSCTTHHHHHTTTTT
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 35999999999999999999987543
No 193
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=25.65 E-value=87 Score=25.56 Aligned_cols=26 Identities=15% Similarity=0.139 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHhCC
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLLSP 412 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~~a 412 (460)
.+.+..+||+.+|++..+|...+...
T Consensus 21 ~G~s~~~ia~~lgis~~Tv~r~~~~~ 46 (141)
T 1u78_A 21 LNVSLHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHSG
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHcc
Confidence 35789999999999999999998753
No 194
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=25.52 E-value=99 Score=26.70 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHHH
Q 012567 371 TYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHAV 408 (460)
Q Consensus 371 i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~~ 408 (460)
..+|.++..++..+.| ...|..+||+..|++..++-..
T Consensus 10 r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tiY~~ 48 (202)
T 2d6y_A 10 KARIFEAAVAEFARHGIAGARIDRIAAEARANKQLIYAY 48 (202)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHH
Confidence 3456666666767767 6889999999999999998544
No 195
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=25.30 E-value=76 Score=26.98 Aligned_cols=39 Identities=31% Similarity=0.491 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHHHH
Q 012567 371 TYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHAVL 409 (460)
Q Consensus 371 i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~~l 409 (460)
..+|..+...|..+.| ...|..+||+..|++..++-...
T Consensus 9 r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F 48 (195)
T 2dg7_A 9 EQRLKRAALELYSEHGYDNVTVTDIAERAGLTRRSYFRYF 48 (195)
T ss_dssp HHHHHHHHHHHHHHSCGGGCCHHHHHHHTTCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCccccCHHHHHHHhCCCHHHHHHHc
Confidence 3456666667777777 56899999999999999987554
No 196
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=25.27 E-value=89 Score=24.78 Aligned_cols=25 Identities=8% Similarity=-0.040 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHhC
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLLS 411 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~~ 411 (460)
.+.+..+||+.+|++..+|...+..
T Consensus 32 ~g~s~~~ia~~lgis~~Tv~~w~~~ 56 (128)
T 1pdn_C 32 DGIRPCVISRQLRVSHGCVSKILNR 56 (128)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3578999999999999999888764
No 197
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=25.26 E-value=1.1e+02 Score=27.33 Aligned_cols=40 Identities=20% Similarity=0.298 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHH
Q 012567 368 VEATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHA 407 (460)
Q Consensus 368 ~e~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~ 407 (460)
.....+|..+...+..+.| ...|..+||+..|++..++-.
T Consensus 22 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~tlY~ 62 (231)
T 2zcx_A 22 QQREEAILDAARELGTERGIREITLTDIAATVGMHKSALLR 62 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcccCCHHHHHHHhCCCHHHHHH
Confidence 3445567777777777777 678999999999999998854
No 198
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=25.18 E-value=94 Score=26.69 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHH
Q 012567 371 TYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHA 407 (460)
Q Consensus 371 i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~ 407 (460)
..+|.++-.+|..+.| ...|.++||+..|++..++-.
T Consensus 9 r~~Il~aA~~lf~~~G~~~ts~~~IA~~aGvs~gtlY~ 46 (197)
T 2gen_A 9 KDEILQAALACFSEHGVDATTIEMIRDRSGASIGSLYH 46 (197)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHHHCCChHHHHH
Confidence 3456666667777777 578999999999999998854
No 199
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=25.11 E-value=92 Score=26.58 Aligned_cols=40 Identities=28% Similarity=0.489 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHHHH
Q 012567 370 ATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHAVL 409 (460)
Q Consensus 370 ~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~~l 409 (460)
...+|.++...|..+.| ...|..+||+..|++..++-...
T Consensus 18 ~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F 58 (207)
T 2rae_A 18 TQDRISTVGIELFTEQGFDATSVDEVAEASGIARRTLFRYF 58 (207)
T ss_dssp HHHHHHHHHHHHHHHHCTTTSCHHHHHHHTTSCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcchHhhhC
Confidence 34556667677777777 67899999999999999987553
No 200
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=24.96 E-value=92 Score=26.70 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHH
Q 012567 372 YRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRL 405 (460)
Q Consensus 372 ~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~V 405 (460)
.+|..+...|..+.| ...|..+||+..|++.+++
T Consensus 14 ~~Il~aA~~lf~~~G~~~~ti~~Ia~~agvs~~t~ 48 (216)
T 3f0c_A 14 ELIINAAQKRFAHYGLCKTTMNEIASDVGMGKASL 48 (216)
T ss_dssp HHHHHHHHHHHHHHCSSSCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHcCCCcCCHHHHHHHhCCCHHHH
No 201
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=24.77 E-value=92 Score=26.95 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHH
Q 012567 372 YRVKEARKQLYSENGRHPNNEEVAEATGLSMKRL 405 (460)
Q Consensus 372 ~kl~ka~~~L~~~~gr~pS~eEIAe~LGIS~e~V 405 (460)
.+|.++...+..+.|...|..+||+..|++..++
T Consensus 23 ~~Il~aA~~lf~~~G~~~s~~~IA~~aGvs~~tl 56 (215)
T 2hku_A 23 DALFTAATELFLEHGEGVPITQICAAAGAHPNQV 56 (215)
T ss_dssp HHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHH
No 202
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=24.74 E-value=54 Score=27.69 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHhC
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLLS 411 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~~ 411 (460)
+-|+..+||+.+|+|..+|+.++..
T Consensus 27 ~LPse~~La~~~gvSr~tVr~Al~~ 51 (129)
T 2ek5_A 27 RVPSTNELAAFHRINPATARNGLTL 51 (129)
T ss_dssp CBCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 3469999999999999999999863
No 203
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=24.66 E-value=1.2e+02 Score=24.37 Aligned_cols=32 Identities=25% Similarity=0.216 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHhCCCCCcccc
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLD 419 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~~ar~~lSLD 419 (460)
++.|.+++|+.+|++..+|..+..- +...+++
T Consensus 33 ~gltq~elA~~~gis~~~is~~E~G-~~~p~~~ 64 (114)
T 3vk0_A 33 KGWSQEELARQCGLDRTYVSAVERK-RWNIALS 64 (114)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHTTT-CCCCCHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC-CCCCCHH
Confidence 4689999999999999999887753 2234444
No 204
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=24.43 E-value=1.1e+02 Score=26.11 Aligned_cols=24 Identities=25% Similarity=0.138 Sum_probs=21.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHhC
Q 012567 388 HPNNEEVAEATGLSMKRLHAVLLS 411 (460)
Q Consensus 388 ~pS~eEIAe~LGIS~e~Vk~~l~~ 411 (460)
..+..|||+.+|+|..+|...+..
T Consensus 24 ~~s~~ela~~lg~s~~tv~~~l~~ 47 (162)
T 2p5v_A 24 RLTNVELSERVALSPSPCLRRLKQ 47 (162)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 479999999999999999888763
No 205
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=24.10 E-value=1e+02 Score=24.80 Aligned_cols=24 Identities=8% Similarity=0.135 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
...+..+||+.+|++..+|...+.
T Consensus 46 ~~~~~~ela~~l~~~~~tvs~~l~ 69 (139)
T 3bja_A 46 GKVSMSKLIENMGCVPSNMTTMIQ 69 (139)
T ss_dssp CSEEHHHHHHHCSSCCTTHHHHHH
T ss_pred CCcCHHHHHHHHCCChhHHHHHHH
Confidence 357999999999999998887775
No 206
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=24.07 E-value=1.2e+02 Score=25.48 Aligned_cols=25 Identities=12% Similarity=0.127 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHhC
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLLS 411 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~~ 411 (460)
...+..|||+.+|+|..+|...++.
T Consensus 22 ~~~s~~ela~~lg~s~~tv~~~l~~ 46 (151)
T 2dbb_A 22 SRLTYRELADILNTTRQRIARRIDK 46 (151)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4579999999999999999888763
No 207
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=24.06 E-value=1.4e+02 Score=26.37 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHH
Q 012567 368 VEATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLH 406 (460)
Q Consensus 368 ~e~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk 406 (460)
.....+|..+...+..+.| ...|..+||+..|++..++-
T Consensus 15 ~~~r~~il~aA~~l~~~~G~~~~s~~~IA~~agvs~~t~Y 54 (216)
T 2oi8_A 15 TQVRAEIKDHAWEQIATAGASALSLNAIAKRMGMSGPALY 54 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCCHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCHHHHH
Confidence 3445566677777777777 67999999999999988874
No 208
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=24.06 E-value=1.3e+02 Score=26.23 Aligned_cols=23 Identities=9% Similarity=0.053 Sum_probs=18.8
Q ss_pred CHHHHHHHhCCCHHHHHHHHhCC
Q 012567 390 NNEEVAEATGLSMKRLHAVLLSP 412 (460)
Q Consensus 390 S~eEIAe~LGIS~e~Vk~~l~~a 412 (460)
|..|+|+.+|++..+|......-
T Consensus 22 tq~elA~~~Gis~~~i~~~e~g~ 44 (189)
T 2fjr_A 22 QKIQLANHFDIASSSLSNRYTRG 44 (189)
T ss_dssp SHHHHHHHTTCCHHHHHHHHHSS
T ss_pred CHHHHHHHhCcCHHHHHHHHhCC
Confidence 88888888888888888887643
No 209
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=24.02 E-value=1.1e+02 Score=25.67 Aligned_cols=23 Identities=4% Similarity=-0.093 Sum_probs=20.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHh
Q 012567 388 HPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 388 ~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
..+..+||+.+|++..+|..++.
T Consensus 67 ~~t~~eLa~~l~~~~~~vs~~l~ 89 (161)
T 3e6m_A 67 ELTVGQLATLGVMEQSTTSRTVD 89 (161)
T ss_dssp EEEHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHH
Confidence 67899999999999999988775
No 210
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=23.98 E-value=2.3e+02 Score=23.82 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=22.1
Q ss_pred hCCCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 385 NGRHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 385 ~gr~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
.+...+..|||+.+|++..+|-.++.
T Consensus 43 ~~~~~~~~eLa~~l~~~~~tvs~~v~ 68 (151)
T 4aik_A 43 LPPEQSQIQLAKAIGIEQPSLVRTLD 68 (151)
T ss_dssp SCTTSCHHHHHHHHTSCHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHCcCHHHHHHHHH
Confidence 45667889999999999999988775
No 211
>2g7h_A Methylated-DNA--protein-cysteine methyltransferase; protein structure, DNA repair, DNA methyltransferase; NMR {Methanocaldococcus jannaschii}
Probab=23.84 E-value=46 Score=30.10 Aligned_cols=64 Identities=14% Similarity=0.149 Sum_probs=42.0
Q ss_pred HHHHHHHHhhhc-----CcccccCcchHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHhC
Q 012567 346 IKQAVRKSLSDQ-----SRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLS 411 (460)
Q Consensus 346 Ir~aI~~~Lrk~-----~r~iriP~~~~e~i~kl~ka~~~L~~~~gr~pS~eEIAe~LGIS~e~Vk~~l~~ 411 (460)
+...+..|+.-. .....+|........+|.++...++ .|+..|+.+||+.+|.+...|-.++..
T Consensus 51 ~~~~l~~Yf~G~~~~~~~~~f~lpl~~t~Fq~~Vw~~l~~IP--~G~t~TYg~iA~~~G~p~RaVG~Al~~ 119 (167)
T 2g7h_A 51 AEIILKLYFAEIDDKKVRELISYKLEVPEFTKKVLDIVKDIE--FGKTLTYGDIAKKLNTSPRAVGMALKR 119 (167)
T ss_dssp HHHHHHHHTTCCCSCCTTTTCCBCSCCSSCCHHHHHHHTTCC--TTCCEEHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCccccccccCcccccHHHHHHHHHHhcCCC--CCCEeeHHHHHHHhCCCHHHHHHHHHh
Confidence 334455666544 3444555544333445666654443 688899999999999998888888774
No 212
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=23.81 E-value=98 Score=26.86 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHH
Q 012567 371 TYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLH 406 (460)
Q Consensus 371 i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk 406 (460)
..+|.++-.+|..+.| ...|.++||+..|+|.+++-
T Consensus 13 r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgtlY 49 (219)
T 2w53_A 13 REGILDAAEACFHEHGVARTTLEMIGARAGYTRGAVY 49 (219)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchHHh
Confidence 3456666677777777 67899999999999988873
No 213
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=23.77 E-value=1e+02 Score=27.06 Aligned_cols=37 Identities=16% Similarity=0.251 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHH
Q 012567 371 TYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHA 407 (460)
Q Consensus 371 i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~ 407 (460)
..+|.++...|..+.| ...|..+||+..|||.+++-.
T Consensus 11 r~~Il~aA~~lf~~~Gy~~ts~~~IA~~AGvskgtlY~ 48 (215)
T 1ui5_A 11 RATIIGAAADLFDRRGYESTTLSEIVAHAGVTKGALYF 48 (215)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchhhHh
Confidence 4556666677777777 678999999999999888843
No 214
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=23.75 E-value=1e+02 Score=24.62 Aligned_cols=37 Identities=16% Similarity=0.175 Sum_probs=27.9
Q ss_pred HhHHHHHhhhcCCCCcHHHHHHHhCCCHHHHHHHHhc
Q 012567 246 EGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 282 (460)
Q Consensus 246 e~~~~~L~~~~g~~pt~~ewA~a~g~de~~L~~~l~~ 282 (460)
.++..-+.+....+++..++|+.+|+++..|.+.++.
T Consensus 10 ~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (113)
T 3oio_A 10 TEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQ 46 (113)
T ss_dssp HHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3444455666677899999999999999887766554
No 215
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=23.65 E-value=1.9e+02 Score=23.48 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 386 GRHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 386 gr~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
....+..+||+.+|++..+|..++.
T Consensus 48 ~~~~~~~~la~~l~i~~~~vs~~l~ 72 (147)
T 2hr3_A 48 GGDVTPSELAAAERMRSSNLAALLR 72 (147)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHH
Confidence 3467999999999999999988876
No 216
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=23.63 E-value=65 Score=26.96 Aligned_cols=34 Identities=12% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHH
Q 012567 372 YRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRL 405 (460)
Q Consensus 372 ~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~V 405 (460)
.+|.++..+|..+.| ...|..+||+..|++..++
T Consensus 9 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~ 43 (191)
T 1sgm_A 9 EKILHTASRLSQLQGYHATGLNQIVKESGAPKGSL 43 (191)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCSCHH
T ss_pred HHHHHHHHHHHHHcCccccCHHHHHHHHCCCchhH
No 217
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=23.59 E-value=69 Score=25.68 Aligned_cols=24 Identities=8% Similarity=0.063 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
...+..|||+.+|+|..+|+..+.
T Consensus 15 g~vsv~eLA~~l~VS~~TIRrDL~ 38 (87)
T 2k02_A 15 GRMEAKQLSARLQTPQPLIDAMLE 38 (87)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHH
Confidence 467899999999999999998875
No 218
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=23.56 E-value=55 Score=27.46 Aligned_cols=43 Identities=21% Similarity=0.198 Sum_probs=0.0
Q ss_pred cCcchHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHH
Q 012567 363 LPFHMVEATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRL 405 (460)
Q Consensus 363 iP~~~~e~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~V 405 (460)
++....+...+|..+..+|..+.| ...|..+||+..|++.+++
T Consensus 2 m~~~~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~ 45 (195)
T 3pas_A 2 MRQRDDSKRIAFLEATVREVADHGFSATSVGKIAKAAGLSPATL 45 (195)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHH
T ss_pred CccchhHHHHHHHHHHHHHHHHcChHhcCHHHHHHHhCCCchHH
No 219
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=23.56 E-value=91 Score=27.04 Aligned_cols=37 Identities=16% Similarity=0.316 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHH
Q 012567 371 TYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHA 407 (460)
Q Consensus 371 i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~ 407 (460)
..+|.++..+|..+.| ...|..+||+..|++.+++-.
T Consensus 10 r~~Il~aA~~lf~~~Gy~~~s~~~IA~~AGvs~gt~Y~ 47 (206)
T 1vi0_A 10 YMQIIDAAVEVIAENGYHQSQVSKIAKQAGVADGTIYL 47 (206)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHhCCChhHHHH
Confidence 3456666667777777 578999999999999998854
No 220
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=23.49 E-value=94 Score=26.87 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=20.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHh
Q 012567 388 HPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 388 ~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
..+..|||+.+|+|..+|...++
T Consensus 17 ~~s~~~la~~lg~s~~tv~~rl~ 39 (162)
T 3i4p_A 17 TLAVADLAKKVGLSTTPCWRRIQ 39 (162)
T ss_dssp CSCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHH
Confidence 45899999999999999998876
No 221
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=23.45 E-value=1e+02 Score=26.65 Aligned_cols=39 Identities=21% Similarity=0.179 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHHH
Q 012567 370 ATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHAV 408 (460)
Q Consensus 370 ~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~~ 408 (460)
...+|..+..+|..+.| ...|..+||+..|++..++-..
T Consensus 16 ~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t~Y~~ 55 (221)
T 3c2b_A 16 RQNAVLDQALRLLVEGGEKALTTSGLARAANCSKESLYKW 55 (221)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccCCHHHHHHHhCCCHHHHHHh
Confidence 34566677777777777 6789999999999999998554
No 222
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=23.36 E-value=1.6e+02 Score=20.74 Aligned_cols=25 Identities=4% Similarity=0.104 Sum_probs=22.7
Q ss_pred CCCCCHHHHHHHh-----CCCHHHHHHHHh
Q 012567 386 GRHPNNEEVAEAT-----GLSMKRLHAVLL 410 (460)
Q Consensus 386 gr~pS~eEIAe~L-----GIS~e~Vk~~l~ 410 (460)
+..+|.+||++.| ++|..+|..-+.
T Consensus 17 ~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~ 46 (64)
T 2p5k_A 17 NEIETQDELVDMLKQDGYKVTQATVSRDIK 46 (64)
T ss_dssp SCCCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 4678999999999 999999998887
No 223
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=23.33 E-value=1.2e+02 Score=23.75 Aligned_cols=35 Identities=9% Similarity=0.115 Sum_probs=26.0
Q ss_pred HHHHHhhhcCC-CCcHHHHHHHhCCCHHHHHHHHhc
Q 012567 248 LREVLSERCGG-SPTFAQWAAAAGVDQRELRRRLNY 282 (460)
Q Consensus 248 ~~~~L~~~~g~-~pt~~ewA~a~g~de~~L~~~l~~ 282 (460)
+..-+.+.... +++..++|+.+|+++..|.+.++.
T Consensus 7 i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 42 (103)
T 3lsg_A 7 IQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKK 42 (103)
T ss_dssp HHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 33444555565 789999999999999888766554
No 224
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=23.30 E-value=1e+02 Score=26.56 Aligned_cols=37 Identities=16% Similarity=0.233 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHHH
Q 012567 372 YRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHAV 408 (460)
Q Consensus 372 ~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~~ 408 (460)
.+|.++-..|..+.| ..-|.++||+..|+|..++-..
T Consensus 14 ~~Il~aA~~lF~~~Gy~~ts~~~IA~~aGvsk~tlY~~ 51 (202)
T 2i10_A 14 QVALQTAMELFWRQGYEGTSITDLTKALGINPPSLYAA 51 (202)
T ss_dssp HHHHHHHHHHHHHHTTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHhCCChHHHHHH
Confidence 345666667777777 6689999999999999998543
No 225
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=23.13 E-value=71 Score=24.42 Aligned_cols=26 Identities=4% Similarity=-0.017 Sum_probs=22.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHhC
Q 012567 386 GRHPNNEEVAEATGLSMKRLHAVLLS 411 (460)
Q Consensus 386 gr~pS~eEIAe~LGIS~e~Vk~~l~~ 411 (460)
..+.|..++|+.+|++..+|..+..-
T Consensus 24 ~~glsq~~lA~~~gis~~~is~~e~g 49 (91)
T 1x57_A 24 SKGLTQKDLATKINEKPQVIADYESG 49 (91)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 35789999999999999999988873
No 226
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=23.12 E-value=52 Score=28.59 Aligned_cols=30 Identities=13% Similarity=0.041 Sum_probs=24.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHhCCCCC
Q 012567 386 GRHPNNEEVAEATGLSMKRLHAVLLSPKAP 415 (460)
Q Consensus 386 gr~pS~eEIAe~LGIS~e~Vk~~l~~ar~~ 415 (460)
..+.+.++||+.||++..+|+..+.+.+..
T Consensus 155 ~~g~s~~~Ia~~l~is~~TV~~~~~~i~~K 184 (208)
T 1yio_A 155 IRGLMNKQIAGELGIAEVTVKVHRHNIMQK 184 (208)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HcCCcHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 456799999999999999998877654443
No 227
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=23.05 E-value=1e+02 Score=26.52 Aligned_cols=39 Identities=8% Similarity=0.107 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHH
Q 012567 369 EATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHA 407 (460)
Q Consensus 369 e~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~ 407 (460)
+...+|..+-.+|..+.| ...|..+||+..|++..++-.
T Consensus 12 ~tr~~Il~aA~~l~~e~G~~~~s~~~IA~~agvs~~t~Y~ 51 (198)
T 3cjd_A 12 ALREKLIDLAEAQIEAEGLASLRARELARQADCAVGAIYT 51 (198)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCChhhcCHHHHHHHhCCCccHHHH
Confidence 344567777777777777 678999999999999888743
No 228
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=23.01 E-value=41 Score=28.92 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHhC--CCCCccccc
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLLS--PKAPRSLDQ 420 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~~--ar~~lSLD~ 420 (460)
..||.++||+.+|+++.+|..++.. .+..+++..
T Consensus 50 ~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~ 85 (135)
T 2v79_A 50 YFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEE 85 (135)
T ss_dssp CSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 5699999999999999999988862 234555544
No 229
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=22.91 E-value=1.7e+02 Score=24.02 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
..++..+||+.+|++..+|..++.
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~ 44 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQ 44 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Confidence 468999999999999999988875
No 230
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=22.83 E-value=92 Score=26.67 Aligned_cols=39 Identities=13% Similarity=0.256 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHHH
Q 012567 370 ATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHAV 408 (460)
Q Consensus 370 ~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~~ 408 (460)
...+|.++-.+|..+.| ...|..+||+..|+|.+++-..
T Consensus 13 ~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~~ 52 (197)
T 2hyt_A 13 TRATLLATARKVFSERGYADTSMDDLTAQASLTRGALYHH 52 (197)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHH
Confidence 44566777777777778 6789999999999998887543
No 231
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=22.74 E-value=98 Score=25.17 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
...|..|||+.+|++..+|...+.
T Consensus 40 ~~~t~~ela~~l~~~~stvs~~l~ 63 (152)
T 1ku9_A 40 KPLTISDIMEELKISKGNVSMSLK 63 (152)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 467999999999999999988876
No 232
>1wrj_A Methylated-DNA--protein-cysteine methyltransferase; 2.00A {Sulfolobus tokodaii}
Probab=22.72 E-value=1.2e+02 Score=26.98 Aligned_cols=63 Identities=16% Similarity=0.121 Sum_probs=42.4
Q ss_pred HHHHHHHhhhcCcccccCcch---HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHhC
Q 012567 347 KQAVRKSLSDQSRTIRLPFHM---VEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLS 411 (460)
Q Consensus 347 r~aI~~~Lrk~~r~iriP~~~---~e~i~kl~ka~~~L~~~~gr~pS~eEIAe~LGIS~e~Vk~~l~~ 411 (460)
...+..|+........+|... .....+|.++...++ .|+..|+.+||+.+|.+...|-.++..
T Consensus 46 ~~~l~~Yf~G~~~~f~lpl~~~g~t~fq~~V~~~l~~IP--~G~~~tYg~iA~~~g~p~RaVG~A~~~ 111 (156)
T 1wrj_A 46 FYKLDLYFEGKKVDLTEPVDFKPFNEFRIRVFKEVMRIK--WGEVRTYKQVADAVKTSPRAVGTALSK 111 (156)
T ss_dssp HHHHHHHTTTCCCCCCCCBCCTTSCHHHHHHHHHHTTSC--TTCCEEHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCCCeeecCCCCCHHHHHHHHHHhCCC--CCceEcHHHHHHHhCCCccHHHHHHHh
Confidence 344555665444444555544 345566777665544 688899999999999998777777763
No 233
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=22.70 E-value=1.1e+02 Score=25.92 Aligned_cols=36 Identities=25% Similarity=0.197 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHH
Q 012567 372 YRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHA 407 (460)
Q Consensus 372 ~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~ 407 (460)
.+|..+...|..+.| ...|..+||+..|++..++-.
T Consensus 7 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 43 (185)
T 2yve_A 7 EMILRTAIDYIGEYSLETLSYDSLAEATGLSKSGLIY 43 (185)
T ss_dssp HHHHHHHHHHHHHSCSTTCCHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHHcChhhccHHHHHHHhCCChHHHHH
Confidence 455666666767767 578999999999999988854
No 234
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=22.62 E-value=1.2e+02 Score=28.02 Aligned_cols=37 Identities=11% Similarity=-0.018 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 374 VKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 374 l~ka~~~L~~~~gr~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
+.++...+...+....+.+++|+.+|+|...+....+
T Consensus 171 ~~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk 207 (276)
T 3gbg_A 171 MEKISCLVKSDITRNWRWADICGELRTNRMILKKELE 207 (276)
T ss_dssp HHHHHHHHHHTTTSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4455555666777789999999999999999988876
No 235
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=22.58 E-value=70 Score=26.98 Aligned_cols=35 Identities=17% Similarity=0.336 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHH
Q 012567 372 YRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLH 406 (460)
Q Consensus 372 ~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk 406 (460)
.+|.++...+..+.| ...|..+||+..|++.+++-
T Consensus 6 ~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y 41 (189)
T 3geu_A 6 DKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLY 41 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHTTCCHHHHT
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHH
Confidence 455556566666656 56899999999999988873
No 236
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=22.55 E-value=68 Score=27.34 Aligned_cols=40 Identities=23% Similarity=0.242 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHHH
Q 012567 369 EATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHAV 408 (460)
Q Consensus 369 e~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~~ 408 (460)
....+|.++-.+|..+.| ...|..+||+..|++.+++-..
T Consensus 18 ~~R~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~~ 58 (212)
T 3loc_A 18 AKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYY 58 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHHHhhh
Confidence 344566677777777777 6789999999999999988543
No 237
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=22.43 E-value=1.2e+02 Score=23.89 Aligned_cols=37 Identities=11% Similarity=0.067 Sum_probs=28.1
Q ss_pred HhHHHHHhhhcC-CCCcHHHHHHHhCCCHHHHHHHHhc
Q 012567 246 EGLREVLSERCG-GSPTFAQWAAAAGVDQRELRRRLNY 282 (460)
Q Consensus 246 e~~~~~L~~~~g-~~pt~~ewA~a~g~de~~L~~~l~~ 282 (460)
.++..-+.+..+ .+++..++|+.+|++...|.+.++.
T Consensus 6 ~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 43 (107)
T 2k9s_A 6 REACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQ 43 (107)
T ss_dssp HHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 334445556666 7899999999999999888776654
No 238
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=22.34 E-value=1.6e+02 Score=26.12 Aligned_cols=25 Identities=12% Similarity=0.101 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 386 GRHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 386 gr~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
++..|..|||+.+|+|..+|...+.
T Consensus 34 ~~~~s~~eLa~~l~vS~~Ti~rdi~ 58 (187)
T 1j5y_A 34 KEPVSGAQLAEELSVSRQVIVQDIA 58 (187)
T ss_dssp SSCBCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 4568999999999999999988775
No 239
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=22.32 E-value=2e+02 Score=23.95 Aligned_cols=64 Identities=9% Similarity=0.048 Sum_probs=37.1
Q ss_pred hHhHHHHHHHHHHHHHhhhcCcccccCcchHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 338 FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 338 FSTYA~~wIr~aI~~~Lrk~~r~iriP~~~~e~i~kl~ka~~~L~~~~gr~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
.-.|....+.+.+.+.+...-....+.......+..| .. ..+.+..+||+.+|++..+|..++.
T Consensus 23 ~l~~~l~~~~~~~~~~~~~~l~~~~lt~~q~~vL~~l-------~~--~~~~t~~eLa~~l~~~~~tvs~~l~ 86 (159)
T 3s2w_A 23 FIGKAISYLYRYGQIYIGKKIEPYGIGSGQFPFLMRL-------YR--EDGINQESLSDYLKIDKGTTARAIQ 86 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTCCTTTHHHHHHH-------HH--SCSEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH-------HH--CCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 3445555555555555544322223333322222222 11 2457899999999999999988875
No 240
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=22.22 E-value=1.1e+02 Score=25.94 Aligned_cols=41 Identities=22% Similarity=0.355 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHHH
Q 012567 368 VEATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHAV 408 (460)
Q Consensus 368 ~e~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~~ 408 (460)
.+...+|..+...+..+.| ...|..+||+..|++..++-..
T Consensus 25 ~~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 66 (217)
T 3mvp_A 25 IEKRNKILQVAKDLFSDKTYFNVTTNEIAKKADVSVGTLYAY 66 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCChhHHHHH
Confidence 3455667777777777778 6899999999999999988543
No 241
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=22.15 E-value=92 Score=26.87 Aligned_cols=36 Identities=25% Similarity=0.331 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHH
Q 012567 372 YRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHA 407 (460)
Q Consensus 372 ~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~ 407 (460)
.+|.++..++..+.| ...|.++||+..|+|.+++-.
T Consensus 12 ~~Il~AA~~lf~~~G~~~~s~~~IA~~AGvs~gtlY~ 48 (203)
T 2np5_A 12 ERLAAALFDVAAESGLEGASVREVAKRAGVSIGAVQH 48 (203)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhccHHHHHHHhCCCHHHHHH
Confidence 456666667777777 568999999999999998854
No 242
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=22.14 E-value=68 Score=26.01 Aligned_cols=33 Identities=15% Similarity=0.194 Sum_probs=26.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHhCCCCCcccc
Q 012567 386 GRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLD 419 (460)
Q Consensus 386 gr~pS~eEIAe~LGIS~e~Vk~~l~~ar~~lSLD 419 (460)
..+.|..++|+.+||+..+|..+.+- +...|++
T Consensus 25 ~~gltq~eLA~~lGis~~~is~ie~G-~~~~s~~ 57 (104)
T 3trb_A 25 LDKMSANQLAKHLAIPTNRVTAILNG-ARSITAD 57 (104)
T ss_dssp TTSCCHHHHHHHHTSCHHHHHHHHTT-SSCCCHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC-CCCCCHH
Confidence 35789999999999999999998873 3334554
No 243
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=22.01 E-value=1.1e+02 Score=26.81 Aligned_cols=40 Identities=15% Similarity=0.116 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHHH
Q 012567 369 EATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHAV 408 (460)
Q Consensus 369 e~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~~ 408 (460)
+...+|.++..+|..+.| ...|..+||+..|++..++-..
T Consensus 40 ~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~~ 80 (225)
T 2id3_A 40 RIREAVLLAAGDALAADGFDALDLGEIARRAGVGKTTVYRR 80 (225)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHHH
Confidence 345567777777777777 6799999999999999998544
No 244
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 2.19A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=21.92 E-value=1.1e+02 Score=26.30 Aligned_cols=37 Identities=22% Similarity=0.223 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHH
Q 012567 370 ATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLH 406 (460)
Q Consensus 370 ~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk 406 (460)
...+|-.+-..|..+.| ...|..+||+..|+|..++-
T Consensus 13 ~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvsk~tlY 50 (200)
T 2hyj_A 13 TRGRILGRAAEIASEEGLDGITIGRLAEELEMSKSGVH 50 (200)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHH
T ss_pred cHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCChHHHH
Confidence 44566677777777777 67899999999999988873
No 245
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=21.89 E-value=78 Score=26.96 Aligned_cols=37 Identities=19% Similarity=0.346 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHH
Q 012567 371 TYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHA 407 (460)
Q Consensus 371 i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~ 407 (460)
..+|..+..+|..+.| ...|.++||+..|++.+++-.
T Consensus 11 r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~ 48 (193)
T 2dg8_A 11 RERILAATLDLIAEEGIARVSHRRIAQRAGVPLGSMTY 48 (193)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhccHHHHHHHhCCCchhhhe
Confidence 4566667677777777 578999999999999888853
No 246
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=21.82 E-value=91 Score=23.47 Aligned_cols=24 Identities=42% Similarity=0.373 Sum_probs=21.6
Q ss_pred CHHHHHHHhCCCHHHHHHHHhCCC
Q 012567 390 NNEEVAEATGLSMKRLHAVLLSPK 413 (460)
Q Consensus 390 S~eEIAe~LGIS~e~Vk~~l~~ar 413 (460)
+..++|+.||++...|...++..+
T Consensus 15 sq~~~A~~Lgvsq~aVS~~~~~~r 38 (65)
T 2cw1_A 15 NQEYAARALGLSQKLIEEVLKRGL 38 (65)
T ss_dssp CHHHHHHHSSSCHHHHHHHHHTTC
T ss_pred CHHHHHHHhCCCHHHHHHHHHhcC
Confidence 999999999999999999987543
No 247
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=21.80 E-value=67 Score=27.58 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHH
Q 012567 370 ATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRL 405 (460)
Q Consensus 370 ~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~V 405 (460)
...+|.++..+|..+.| ...|.++||+..|++.+++
T Consensus 15 ~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t~ 51 (203)
T 3ccy_A 15 IRDTIIERAAAMFARQGYSETSIGDIARACECSKSRL 51 (203)
T ss_dssp HHHHHHHHHHHHHHHTCTTTSCHHHHHHHTTCCGGGG
T ss_pred HHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcCee
Confidence 34566777777777777 6789999999999997765
No 248
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=21.80 E-value=1.4e+02 Score=24.87 Aligned_cols=23 Identities=17% Similarity=0.135 Sum_probs=20.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHh
Q 012567 388 HPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 388 ~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
..+..+||+.+|++..+|...+.
T Consensus 58 ~~t~~ela~~l~is~~tvs~~l~ 80 (154)
T 2eth_A 58 PKKMKEIAEFLSTTKSNVTNVVD 80 (154)
T ss_dssp CBCHHHHHHHTTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHH
Confidence 67999999999999999988876
No 249
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=21.77 E-value=97 Score=29.15 Aligned_cols=29 Identities=24% Similarity=0.290 Sum_probs=26.6
Q ss_pred hCCCCCHHHHHHHhCCCHHHHHHHHhCCC
Q 012567 385 NGRHPNNEEVAEATGLSMKRLHAVLLSPK 413 (460)
Q Consensus 385 ~gr~pS~eEIAe~LGIS~e~Vk~~l~~ar 413 (460)
.|+.++..++|..+|+++++|..+|....
T Consensus 33 ~Grpv~~~~LA~~~g~~~~~v~~~L~~l~ 61 (220)
T 3f2g_A 33 KGRPVSRTTLAGILDWPAERVAAVLEQAT 61 (220)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHCT
T ss_pred cCCCCCHHHHHHHhCcCHHHHHHHHHhCC
Confidence 68999999999999999999999998554
No 250
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=21.76 E-value=52 Score=24.48 Aligned_cols=24 Identities=13% Similarity=0.040 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
.+.|.+++|+.+|++..+|..+..
T Consensus 23 ~gltq~elA~~~gvs~~tis~~E~ 46 (73)
T 3fmy_A 23 LSLTQKEASEIFGGGVNAFSRYEK 46 (73)
T ss_dssp TTCCHHHHHHHHCSCTTHHHHHHT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHc
Confidence 478999999999999999988876
No 251
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=21.61 E-value=51 Score=27.78 Aligned_cols=36 Identities=11% Similarity=0.102 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHH
Q 012567 370 ATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRL 405 (460)
Q Consensus 370 ~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~V 405 (460)
...+|..+..+|..+.| ...|..+||+..|++.+++
T Consensus 13 ~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~ 49 (199)
T 3on2_A 13 LRRVLLARAESTLEKDGVDGLSLRQLAREAGVSHAAP 49 (199)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHHHHHTC-----C
T ss_pred HHHHHHHHHHHHHHhcChhhhhHHHHHHHhCCChHHH
Confidence 34566667677777777 5689999999999997775
No 252
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=21.58 E-value=74 Score=26.92 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHH
Q 012567 368 VEATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRL 405 (460)
Q Consensus 368 ~e~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~V 405 (460)
.+...+|..+..+|..+.| ...|..+||+..|++.+++
T Consensus 10 ~~~r~~Il~aA~~lf~~~G~~~~ti~~IA~~agvs~~t~ 48 (204)
T 3eup_A 10 DRTRQFIIESTAPVFNVKGLAGTSLTDLTEATNLTKGSI 48 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcHHH
No 253
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=21.57 E-value=1.3e+02 Score=23.82 Aligned_cols=35 Identities=6% Similarity=0.059 Sum_probs=26.4
Q ss_pred HHHHHhhhcCCCCcHHHHHHHhCCCHHHHHHHHhc
Q 012567 248 LREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 282 (460)
Q Consensus 248 ~~~~L~~~~g~~pt~~ewA~a~g~de~~L~~~l~~ 282 (460)
+..-+.+..+.+++..++|+.+|+++..|.+.++.
T Consensus 10 ~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 44 (108)
T 3oou_A 10 VLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQK 44 (108)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34445556677899999999999999887766554
No 254
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=21.54 E-value=2.6e+02 Score=24.49 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=21.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHhC
Q 012567 388 HPNNEEVAEATGLSMKRLHAVLLS 411 (460)
Q Consensus 388 ~pS~eEIAe~LGIS~e~Vk~~l~~ 411 (460)
..|.++||..+|++.++|...+..
T Consensus 180 ~~t~~~lA~~lg~sr~tvsR~l~~ 203 (232)
T 2gau_A 180 YLSREELATLSNMTVSNAIRTLST 203 (232)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHH
Confidence 468999999999999999888763
No 255
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=21.52 E-value=1.1e+02 Score=26.42 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHhC
Q 012567 388 HPNNEEVAEATGLSMKRLHAVLLS 411 (460)
Q Consensus 388 ~pS~eEIAe~LGIS~e~Vk~~l~~ 411 (460)
..|.++||..+|++.++|...++.
T Consensus 139 ~~t~~~lA~~lg~sr~tvsR~l~~ 162 (195)
T 3b02_A 139 TVSHEEIADATASIRESVSKVLAD 162 (195)
T ss_dssp ECCHHHHHHTTTSCHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHH
Confidence 368999999999999999888763
No 256
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=21.38 E-value=1.2e+02 Score=26.89 Aligned_cols=38 Identities=11% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHH
Q 012567 368 VEATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRL 405 (460)
Q Consensus 368 ~e~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~V 405 (460)
.+...+|.++..+|..+.| ...|..+||+..|++..++
T Consensus 43 ~~~r~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~~tl 81 (236)
T 3q0w_A 43 DDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTF 81 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCcHHHH
No 257
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=21.35 E-value=1.5e+02 Score=21.08 Aligned_cols=22 Identities=14% Similarity=0.292 Sum_probs=20.3
Q ss_pred CHHHHHHHhCCCHHHHHHHHhC
Q 012567 390 NNEEVAEATGLSMKRLHAVLLS 411 (460)
Q Consensus 390 S~eEIAe~LGIS~e~Vk~~l~~ 411 (460)
+..++|+.||++...|..+++.
T Consensus 15 s~~~~A~~lgis~~~vs~~~~~ 36 (67)
T 2pij_A 15 TQSALAAALGVNQSAISQMVRA 36 (67)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHT
T ss_pred CHHHHHHHHCcCHHHHHHHHcC
Confidence 8999999999999999998864
No 258
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=21.34 E-value=1.3e+02 Score=24.32 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=20.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHh
Q 012567 388 HPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 388 ~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
..+..+||+.+|++..+|...+.
T Consensus 50 ~~t~~ela~~l~~s~~~vs~~l~ 72 (142)
T 2fbi_A 50 EMESYQLANQACILRPSMTGVLA 72 (142)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHhHHHHHHH
Confidence 47999999999999999988876
No 259
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=21.27 E-value=86 Score=25.76 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
...+..+||+.+|++..+|..++.
T Consensus 49 ~~~t~~eLa~~l~~~~~tvs~~l~ 72 (140)
T 3hsr_A 49 EKLNIKKLGERVFLDSGTLTPLLK 72 (140)
T ss_dssp CEEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCChhhHHHHHH
Confidence 456899999999999999988875
No 260
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=21.26 E-value=58 Score=25.16 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 386 GRHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 386 gr~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
+..++..|||+.+|++..+|...+.
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~ 58 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLK 58 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4568999999999999999988876
No 261
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=21.25 E-value=1.5e+02 Score=25.03 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
...+..|||+.+|+|..+|...+.
T Consensus 20 ~~~s~~ela~~lg~s~~tv~~~l~ 43 (151)
T 2cyy_A 20 GKAPLREISKITGLAESTIHERIR 43 (151)
T ss_dssp TTCCHHHHHHHHCSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 357999999999999999988875
No 262
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=21.20 E-value=1.4e+02 Score=26.13 Aligned_cols=25 Identities=12% Similarity=0.064 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHhC
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLLS 411 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~~ 411 (460)
...+..|||+.+|+|..+|...+..
T Consensus 30 ~~~s~~eLA~~lglS~~tv~~~l~~ 54 (171)
T 2ia0_A 30 ARLTISELSEQLKKPESTIHFRIKK 54 (171)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3579999999999999999988763
No 263
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=21.20 E-value=32 Score=28.43 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=20.6
Q ss_pred CCHHHHHHHhCCCHHHHHHHHh
Q 012567 389 PNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 389 pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
.+..|||+.+|++..+|...+.
T Consensus 52 ~t~~eLa~~l~~s~~tvs~~l~ 73 (146)
T 3tgn_A 52 LTNSELARRLNVSQAAVTKAIK 73 (146)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHH
Confidence 8999999999999999988876
No 264
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=21.20 E-value=1.4e+02 Score=26.99 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHHH
Q 012567 369 EATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHAV 408 (460)
Q Consensus 369 e~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~~ 408 (460)
....+|..+..+|..+.| ...|..+||+..||+..++-..
T Consensus 48 ~tr~~Il~AA~~lf~e~G~~~~Ti~~IA~~AGvs~~t~Y~y 88 (260)
T 2of7_A 48 RTREAIRAATYGLIRQQGYEATTVEQIAERAEVSPSTVLRY 88 (260)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccccHHHHHHHhCCChHHHHHH
Confidence 445567777777777777 5789999999999999998543
No 265
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=21.13 E-value=76 Score=26.68 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHHH
Q 012567 370 ATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHAV 408 (460)
Q Consensus 370 ~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~~ 408 (460)
...+|..+..+|..+.| ...|..+||+..|++.+++-..
T Consensus 8 ~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~tlY~~ 47 (186)
T 2jj7_A 8 TMENILKAAKKKFGERGYEGTSIQEIAKEAKVNVAMASYY 47 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCChhhhhhh
Confidence 34456666666666666 5689999999999999998654
No 266
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=21.08 E-value=1.1e+02 Score=26.98 Aligned_cols=39 Identities=21% Similarity=0.254 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHH
Q 012567 369 EATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHA 407 (460)
Q Consensus 369 e~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~ 407 (460)
....+|.++..+|..+.| ...|..+||+..|++..++-.
T Consensus 13 ~~r~~Il~AA~~l~~~~G~~~~tv~~IA~~agvs~~t~Y~ 52 (231)
T 2qib_A 13 ERRQQLIGVALDLFSRRSPDEVSIDEIASAAGISRPLVYH 52 (231)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCHHHHHH
Confidence 345567777777777777 578999999999999988854
No 267
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=21.07 E-value=1e+02 Score=26.58 Aligned_cols=36 Identities=22% Similarity=0.324 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHH
Q 012567 372 YRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHA 407 (460)
Q Consensus 372 ~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~ 407 (460)
.+|..+...|..+.| ...|..+||+..|++.+++-.
T Consensus 6 ~~Il~aA~~lf~~~G~~~~s~~~IA~~Agvs~~t~Y~ 42 (212)
T 3rh2_A 6 DKIIQASLELFNEHGERTITTNHIAAHLDISPGNLYY 42 (212)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHH
Confidence 455666667777777 568999999999999998854
No 268
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=21.06 E-value=1.5e+02 Score=26.00 Aligned_cols=23 Identities=26% Similarity=0.193 Sum_probs=20.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHh
Q 012567 388 HPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 388 ~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
..|.++||..+|++.++|...++
T Consensus 163 ~~t~~~lA~~lG~sr~tvsR~l~ 185 (222)
T 1ft9_A 163 DFTVEEIANLIGSSRQTTSTALN 185 (222)
T ss_dssp CCCHHHHHHHHCSCHHHHHHHHH
T ss_pred cCCHHHHHHHhCCcHHHHHHHHH
Confidence 36899999999999999988876
No 269
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=20.96 E-value=1e+02 Score=26.91 Aligned_cols=30 Identities=7% Similarity=0.016 Sum_probs=24.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHhCCCCC
Q 012567 386 GRHPNNEEVAEATGLSMKRLHAVLLSPKAP 415 (460)
Q Consensus 386 gr~pS~eEIAe~LGIS~e~Vk~~l~~ar~~ 415 (460)
..++|.+|||+.|+++..+|+..+.+.+..
T Consensus 167 ~~g~s~~~Ia~~l~is~~TV~~hi~~i~~K 196 (215)
T 1a04_A 167 AQGLPNKMIARRLDITESTVKVHVKHMLKK 196 (215)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 346799999999999999999887754443
No 270
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=20.95 E-value=1.2e+02 Score=26.37 Aligned_cols=39 Identities=26% Similarity=0.290 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHH
Q 012567 369 EATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHA 407 (460)
Q Consensus 369 e~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~ 407 (460)
+...+|.++..+|..+.| ...|.++||+..|++..++-.
T Consensus 22 ~~r~~Il~AA~~lf~e~G~~~~s~~~IA~~AGVsk~tlY~ 61 (207)
T 3bjb_A 22 ARHVRMLEAAIELATEKELARVQMHEVAKRAGVAIGTLYR 61 (207)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHH
Confidence 345567777778888878 568999999999999998853
No 271
>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genom protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=20.92 E-value=1.4e+02 Score=26.46 Aligned_cols=38 Identities=18% Similarity=0.392 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHH
Q 012567 370 ATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHA 407 (460)
Q Consensus 370 ~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~ 407 (460)
...+|.++-.+|..+.| ...|..+||+..|++..++-.
T Consensus 8 ~r~~Il~AA~~lF~e~G~~~ts~~~IA~~AGvs~~tlY~ 46 (235)
T 2fbq_A 8 TVERILDAAEQLFAEKGFAETSLRLITSKAGVNLAAVNY 46 (235)
T ss_dssp HHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccccCHHHHHHHhCCCHHHHHH
Confidence 34567777777777778 678999999999999988843
No 272
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=20.92 E-value=1.7e+02 Score=23.22 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHhCCC
Q 012567 367 MVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPK 413 (460)
Q Consensus 367 ~~e~i~kl~ka~~~L~~~~gr~pS~eEIAe~LGIS~e~Vk~~l~~ar 413 (460)
+.+.-.+|.+++ .+.|...+.-+||+.+|++..+|..++...+
T Consensus 17 ~~d~eekVLe~L----keaG~PlkageIae~~GvdKKeVdKaik~LK 59 (80)
T 2lnb_A 17 EGHLEQRILQVL----TEAGSPVKLAQLVKECQAPKRELNQVLYRMK 59 (80)
T ss_dssp HHHHHHHHHHHH----HHHTSCEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHH----HHcCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334344444443 3457788999999999999999999887443
No 273
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=20.88 E-value=55 Score=29.01 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHhCC
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLLSP 412 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~~a 412 (460)
.-.|..|+|+.||++..+|..+++.-
T Consensus 30 ~~LTv~EVAe~LgVs~srV~~LIr~G 55 (148)
T 2kfs_A 30 PTYDLPRVAELLGVPVSKVAQQLREG 55 (148)
T ss_dssp CEEEHHHHHHHHTCCHHHHHHHHHTT
T ss_pred ceEcHHHHHHHhCCCHHHHHHHHHCC
Confidence 34578999999999999999998743
No 274
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=20.79 E-value=1.4e+02 Score=24.53 Aligned_cols=23 Identities=13% Similarity=0.041 Sum_probs=20.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHh
Q 012567 388 HPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 388 ~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
..+..+||+.+|++..+|...+.
T Consensus 51 ~~t~~ela~~l~~s~~tvs~~l~ 73 (155)
T 1s3j_A 51 SLKVSEIAERMEVKPSAVTLMAD 73 (155)
T ss_dssp EEEHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHH
Confidence 57899999999999999988876
No 275
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=20.70 E-value=1e+02 Score=23.82 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=20.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHh
Q 012567 388 HPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 388 ~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
+.+..+||+.+||+..+|...+.
T Consensus 38 g~s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 38 GESKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHH
Confidence 36899999999999999988765
No 276
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=20.67 E-value=46 Score=29.73 Aligned_cols=30 Identities=17% Similarity=0.086 Sum_probs=24.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHhCCCCCc
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLLSPKAPR 416 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~~ar~~l 416 (460)
.+.|.+|||+.|+++..+|+..+...+..+
T Consensus 163 ~g~s~~eIa~~l~is~~TV~~hi~~l~~KL 192 (225)
T 3c3w_A 163 EGLTNKQIADRMFLAEKTVKNYVSRLLAKL 192 (225)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 458999999999999999998877544433
No 277
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=20.65 E-value=1.2e+02 Score=24.27 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=21.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHh
Q 012567 388 HPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 388 ~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
+.+..++|+.+||+..++..+.+
T Consensus 32 GikQ~eLAK~iGIsqsTLSaIen 54 (83)
T 2l1p_A 32 DMNQSSLAKECPLSQSMISSIVN 54 (83)
T ss_dssp TSCHHHHHHHSSSCHHHHHHHHT
T ss_pred hcCHHHHHHHcCCCHHHHHHHHc
Confidence 78899999999999999999877
No 278
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=20.62 E-value=80 Score=24.74 Aligned_cols=24 Identities=13% Similarity=0.055 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
.+.|.+++|+.+|++..+|..+..
T Consensus 42 ~glsq~elA~~lgvs~~~is~~E~ 65 (99)
T 2ppx_A 42 LKLTQEEFSARYHIPLGTLRDWEQ 65 (99)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHc
Confidence 468999999999999999998876
No 279
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=20.47 E-value=84 Score=24.15 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=21.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHhC
Q 012567 388 HPNNEEVAEATGLSMKRLHAVLLS 411 (460)
Q Consensus 388 ~pS~eEIAe~LGIS~e~Vk~~l~~ 411 (460)
+.|..++|+.+|++..+|..+.+-
T Consensus 21 gltq~~lA~~~gis~~~is~~e~g 44 (94)
T 2ict_A 21 NVSLREFARAMEIAPSTASRLLTG 44 (94)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHT
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcC
Confidence 578999999999999999998874
No 280
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=20.45 E-value=1.9e+02 Score=22.96 Aligned_cols=24 Identities=25% Similarity=0.155 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHh
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLL 410 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~ 410 (460)
++.|..++|+.+|++..+|..+.+
T Consensus 40 ~glsq~~lA~~~gis~~~is~~E~ 63 (117)
T 3f52_A 40 KGVTLRELAEASRVSPGYLSELER 63 (117)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHC
Confidence 357899999999999999988876
No 281
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=20.24 E-value=1.6e+02 Score=24.86 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHhC
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLLS 411 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~~ 411 (460)
...+..|||+.+|+|..+|...+..
T Consensus 21 ~~~s~~ela~~lg~s~~tv~~~l~~ 45 (152)
T 2cg4_A 21 ARTAYAELAKQFGVSPETIHVRVEK 45 (152)
T ss_dssp TTSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4579999999999999999988763
No 282
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=20.20 E-value=98 Score=26.96 Aligned_cols=38 Identities=26% Similarity=0.325 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHH
Q 012567 370 ATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRLHA 407 (460)
Q Consensus 370 ~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~Vk~ 407 (460)
...+|..+-..|..+.| ...|..+||+..|++.+++-.
T Consensus 25 ~r~~Il~aA~~lf~e~G~~~~s~~~IA~~aGvskgtlY~ 63 (214)
T 2oer_A 25 LVASILEAAVQVLASEGAQRFTTARVAERAGVSIGSLYQ 63 (214)
T ss_dssp HHHHHHHHHHHC------CCCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCcccccHHHHHHHhCCCCchHHH
Confidence 34566666667777777 568999999999999998854
No 283
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=20.20 E-value=71 Score=27.30 Aligned_cols=36 Identities=11% Similarity=0.196 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHH
Q 012567 370 ATYRVKEARKQLYSENG-RHPNNEEVAEATGLSMKRL 405 (460)
Q Consensus 370 ~i~kl~ka~~~L~~~~g-r~pS~eEIAe~LGIS~e~V 405 (460)
...+|.++..+|..+.| ...|..+||+..|++..++
T Consensus 14 ~r~~Il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~ 50 (195)
T 2iu5_A 14 TQKIIAKAFKDLMQSNAYHQISVSDIMQTAKIRRQTF 50 (195)
T ss_dssp HHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCGGGG
T ss_pred HHHHHHHHHHHHHHhCCCCeeCHHHHHHHhCCCHHHH
Confidence 34566677777777777 5689999999999997766
No 284
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=20.14 E-value=82 Score=24.73 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHhC
Q 012567 387 RHPNNEEVAEATGLSMKRLHAVLLS 411 (460)
Q Consensus 387 r~pS~eEIAe~LGIS~e~Vk~~l~~ 411 (460)
.+.|..++|+.+|++..+|..+..-
T Consensus 13 ~gltq~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 13 KGYSLSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4689999999999999999988874
No 285
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=20.04 E-value=82 Score=29.03 Aligned_cols=38 Identities=24% Similarity=0.246 Sum_probs=29.9
Q ss_pred hCCCCCHHHHHHHhCCCHHHHHHHHhCCCCCccccccc
Q 012567 385 NGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKI 422 (460)
Q Consensus 385 ~gr~pS~eEIAe~LGIS~e~Vk~~l~~ar~~lSLD~~v 422 (460)
.+...+.+++|+.+|||...|..++..++-+..|-.-+
T Consensus 39 ~g~~~~Q~~lA~~~giS~a~VSR~L~~A~LP~~lv~~f 76 (189)
T 3mky_B 39 NEFAGNISALADAENISRKIITRCINTAKLPKSVVALF 76 (189)
T ss_dssp TTTTTCHHHHHHHHTSCHHHHHHHHHHHHSCHHHHHTS
T ss_pred cCcccCHHHHHHHHCCCHHHHHHHHHHhcCCHHHHHHc
Confidence 35678999999999999999999998776554444333
No 286
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=20.04 E-value=2e+02 Score=25.10 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHhC
Q 012567 388 HPNNEEVAEATGLSMKRLHAVLLS 411 (460)
Q Consensus 388 ~pS~eEIAe~LGIS~e~Vk~~l~~ 411 (460)
..|.++||..+|++.++|...+..
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR~l~~ 200 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALAD 200 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHH
Confidence 468999999999999999888763
No 287
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=20.03 E-value=1.1e+02 Score=22.98 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHh-----CCCHHHHHHHHh
Q 012567 387 RHPNNEEVAEAT-----GLSMKRLHAVLL 410 (460)
Q Consensus 387 r~pS~eEIAe~L-----GIS~e~Vk~~l~ 410 (460)
..+|.+||++.+ +++..+|...+.
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~ 60 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLN 60 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHH
Confidence 578999999999 999999988876
Done!