Query 012568
Match_columns 460
No_of_seqs 147 out of 258
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 04:00:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012568.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012568hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2608 Endoplasmic reticulum 100.0 4E-135 9E-140 1035.4 25.1 398 22-440 3-436 (469)
2 PF04137 ERO1: Endoplasmic Ret 100.0 7E-123 1E-127 943.3 8.3 326 91-424 2-357 (357)
3 COG5061 ERO1 Oxidoreductin, en 100.0 1.9E-90 4.2E-95 690.7 13.5 320 71-421 22-365 (425)
4 PF13746 Fer4_18: 4Fe-4S diclu 38.8 16 0.00036 29.4 1.2 26 345-370 35-60 (69)
5 PF15264 TSSC4: Tumour suppres 37.8 13 0.00028 33.5 0.5 15 201-215 56-70 (115)
6 PF13124 DUF3963: Protein of u 30.4 88 0.0019 23.0 3.6 29 261-289 7-36 (40)
7 PF14812 PBP1_TM: Transmembran 28.1 5.2 0.00011 34.0 -3.4 16 19-34 63-78 (81)
8 PRK12785 fliL flagellar basal 21.5 41 0.00089 31.6 0.8 34 1-34 1-36 (166)
9 PRK13159 cytochrome c-type bio 19.6 45 0.00097 31.6 0.6 56 21-76 7-62 (155)
10 PHA02450 hypothetical protein 19.5 29 0.00064 26.7 -0.5 23 204-229 5-27 (53)
No 1
>KOG2608 consensus Endoplasmic reticulum membrane-associated oxidoreductin involved in disulfide bond formation [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4e-135 Score=1035.45 Aligned_cols=398 Identities=47% Similarity=0.823 Sum_probs=362.7
Q ss_pred cchHHHHHHHHHHHHhhhhhcccCCccccccCCCCcccccCCCCCCccccccccCcccchhhHHhhhhchhhHHhHHhhc
Q 012568 22 RGLWSVWAVIVVLFATAAVTTRTGSKIALFANNQTSCHCSSSSQDSVKYTGMVEDCCCDYETVDSVNGEVLHPLLQQLVT 101 (460)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c~~~~~~~~~~~g~vdDc~c~~etId~~N~~~l~P~L~~L~~ 101 (460)
||.|+++++.+|.+++ .++ +-|.. ..|||+ +.|+|+||+|||+|||++|+++|+|+|+.|++
T Consensus 3 r~~~l~~l~~~~~l~~-~v~-------~~~~~--~~~~ck--------~~~~i~dc~c~~~~i~nln~~~i~~~lq~l~k 64 (469)
T KOG2608|consen 3 RAIALLGLIAAVKLIS-VVN-------TQFAS--SICFCK--------VDGIIEDCTCDYETIDNLNNEVIYPLLQKLLK 64 (469)
T ss_pred hhHHHHHHHHHHHHHH-hcc-------ccccc--cceeee--------cccccccCCCCHHHHHHhhccccchHHHHHhc
Confidence 4788777777777776 344 22222 689999 77999999999999999999999999999999
Q ss_pred CCcceeEeccCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCC-CccccccCCC-CcccccccchhhhcCc
Q 012568 102 TPFFRYFKAKLWCDCPFWPDDGMCRLRDCSVCECPENEFPEPFKKPFHILPS-DDLMCQEGKP-EATVDRTLDKRAFRGW 179 (460)
Q Consensus 102 t~fFRyfKVnL~~~CPFW~dd~~C~~~~C~V~~c~e~eiP~~wr~~~~~~~~-~~~~c~~~~~-~~~vd~tl~~~~~~~w 179 (460)
+||||||||||+++||||+||++|++++|+|++|+|+|||++||++.+.+++ .-..|.++++ ++++|++++.++|..|
T Consensus 65 sdffryYkvnL~~~CpFW~Dd~~C~~r~C~V~~c~e~evPe~~k~~~~~~~~~~~~e~~~~~~~~~~~d~tl~dr~f~~w 144 (469)
T KOG2608|consen 65 SDFFRYYKVNLYRDCPFWPDDGMCLNRACSVEPCPEDEVPEGWKKSLGKYEPELCSECEDADSELGAKDRTLSDRAFLLW 144 (469)
T ss_pred ccchhheeccccCCCCCCCchhhhhhcCCccccCcccccchhhhhhhhccChhhhhhhhhccccccchhccccccccccc
Confidence 9999999999999999999999999999999999999999999997656655 2245655666 8899999999999999
Q ss_pred cccCCC-CCCCCCCCCCCceEeeCCCCCCCCCCCCCCChhhhHHHHHhhcCCCCC------C------CCCC--------
Q 012568 180 IETDNP-WTNDDETDNGEMTYVNLLLNPERYTGYTGPSARRIWDAVYTENCPKWM------A------IVPA-------- 238 (460)
Q Consensus 180 ~~~d~~-~~~dDe~d~~~~~YVDLl~NPERyTGY~G~~A~rIW~aIY~ENCF~~~------~------~~~C-------- 238 (460)
..+|+. ||.+|+.++++++||||++||||||||+|++|+|||++||+||||++. . .++|
T Consensus 145 ~~~d~~~~C~~dd~~s~~~~YVdLl~NPERyTGY~G~sa~rIW~sIYeeNCf~~~~~~~~~~~~~~~l~g~clEkrvfYr 224 (469)
T KOG2608|consen 145 DKHDDLSFCEVDDEESPEMVYVDLLLNPERYTGYKGPSAARIWRSIYEENCFKPDPLFDPNSIPYNWLEGLCLEKRVFYR 224 (469)
T ss_pred cccCCccceeecCCCCCCcEEEehhcChhhhcCCCCCCHHHHHHHHHHhhCCCCCcccCCcccccchhccccHHHHHHHH
Confidence 999998 899888888999999999999999999999999999999999999875 1 3677
Q ss_pred ----CCCCcCCCCCCC----CCC-CCCCChHHHHHHHhhhchhhhhHHHHHHHHHHHHHHhhhhhhhhccCCCCccccHH
Q 012568 239 ----NPQTRPNPPAKT----RPL-RWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRAVTKATDYLEQAEYDTGNHEDDLK 309 (460)
Q Consensus 239 ----LHaSIsiHl~~~----~~~-~w~pNl~~F~~Rv~~~PeRl~NLYF~YllvLRAl~Ka~p~L~~~~f~tG~~~eD~~ 309 (460)
|||||+||||++ .++ .||||+++|+.||++||+||+||||+|++|+|||.||+|||++.+|+||+..||.+
T Consensus 225 LISGlHsSIstHl~~~~y~~~e~~~WgpNl~~f~~Rf~~~P~Rl~NlYF~Yll~lrAl~Ki~pyl~~~~~~tgn~~eD~e 304 (469)
T KOG2608|consen 225 LISGLHSSISTHLCSFYYLLEETKRWGPNLDLFRARFGNGPDRLRNLYFTYLLVLRALGKIAPYLEELDFYTGNVEEDAE 304 (469)
T ss_pred HHHHHHHHHHHHHhhhhcCCCcccccCcCHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhcchhhhhhhcccccccchH
Confidence 999999999995 444 69999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCccccccCCCCCccccccCCC-CcchHHHHHHHHhhhhhhhhcCccCCccccccchhhhHHHHHHHHhcc
Q 012568 310 TVSLMKQLLYNPKLQAACPLPFDEAKLWQGQ-SGPELKQQIQEQFRNISALMDCVGCEKCRLWGKLQVLGLGTALKILFS 388 (460)
Q Consensus 310 t~~lv~~Ll~~~~l~~scp~~FDE~~lF~~~-~~~~LKeefr~~FrNISrIMDCVgCeKCRLWGKLQt~GLgTALKILFs 388 (460)
|+.+|.++++.++ +||.||||+.||.|+ .++.||++||+|||||||||||||||||||||||||+||||||||||+
T Consensus 305 ~k~~i~~il~~i~---~~p~hFdE~~~f~gd~~a~~lKe~fr~hFrnISrIMDCVgCdKCRLWGKlQt~GlGTALKILfs 381 (469)
T KOG2608|consen 305 TKSLLSDILSQIK---AFPKHFDEAELFAGDSEAPALKEEFRKHFRNISRIMDCVGCDKCRLWGKLQTQGLGTALKILFS 381 (469)
T ss_pred HHHHHHHHHHHHh---hCccccchHhhhcccccchhHHHHHHHHHHHHHHHHhhcCcchhhhhhhhhhhhhHHHHHHHhc
Confidence 9999999998765 699999999999999 789999999999999999999999999999999999999999999999
Q ss_pred cccccc---cccccccchhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccccC
Q 012568 389 VEGQNH---AAQSLQLQRNEVIALVNLLNRLSESVKIVHEMGPSIEKIMEKKISD 440 (460)
Q Consensus 389 ~~~~~~---~~~~~~L~R~EiVALiNtf~RlS~SI~~v~~f~~~~e~~~~~~~~~ 440 (460)
..+.++ ....++|+|+|||||+|||+|||+||++|++|+.++++.+.++..+
T Consensus 382 ~~~~~~~~~~s~~~~LtR~EvVAL~N~FgRLS~SV~~v~~fr~~~~~~~~~~~~k 436 (469)
T KOG2608|consen 382 VKDADPFTQLSESLELTRNEVVALVNTFGRLSESVREVDNFRSDLAPLLVGASLK 436 (469)
T ss_pred cCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhh
Confidence 987432 2346899999999999999999999999999999999999988776
No 2
>PF04137 ERO1: Endoplasmic Reticulum Oxidoreductin 1 (ERO1); InterPro: IPR007266 Members of this family are required for the formation of disulphide bonds in the endoplasmic reticulum [, ].; GO: 0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor, 0050660 flavin adenine dinucleotide binding, 0006467 protein thiol-disulfide exchange, 0055114 oxidation-reduction process, 0005789 endoplasmic reticulum membrane; PDB: 1RQ1_A 1RP4_A 3NVJ_A 3M31_A 3AHR_A 3AHQ_A.
Probab=100.00 E-value=6.6e-123 Score=943.33 Aligned_cols=326 Identities=50% Similarity=0.921 Sum_probs=264.6
Q ss_pred hhhHHhHHhhcCCcceeEeccCCCCCCCCCCC-CCCCCCCCccccCCCCCCCCCCCCCCCCCCCCccccccCCCCccccc
Q 012568 91 VLHPLLQQLVTTPFFRYFKAKLWCDCPFWPDD-GMCRLRDCSVCECPENEFPEPFKKPFHILPSDDLMCQEGKPEATVDR 169 (460)
Q Consensus 91 ~l~P~L~~L~~t~fFRyfKVnL~~~CPFW~dd-~~C~~~~C~V~~c~e~eiP~~wr~~~~~~~~~~~~c~~~~~~~~vd~ 169 (460)
+|+|+|++|+++||||||||||+++||||+++ ++|++++|+|++|+|+|||++||++.+.+.. ..|.+++.+..+|.
T Consensus 2 ~i~p~L~~L~~~~fFRyfKVnL~k~CpFW~dd~~~C~~~~C~V~~c~e~eiP~~wr~~~~~~~~--~~~~~~~~~~~~~~ 79 (357)
T PF04137_consen 2 KIFPLLQELVKTDFFRYFKVNLYKECPFWNDDNGMCGSRDCAVCECDENEIPEPWRAELSKLEQ--SACEEGSDQSDLDR 79 (357)
T ss_dssp CCHHHHHHHHCSCCCCEEEEESS---SSSSSSSS---TCCCBB-TSS-GGS-GGGSHHHTS--T--TTECCHCCHCSGGG
T ss_pred cchHHHHHHhCCCCeEEEeecCCCCCCCCCCcccCcCCCCCeeeeCChhhcCcccccccccccc--hhcccccchhhhcC
Confidence 58999999999999999999999999999998 9999999999999999999999982233332 24444444556788
Q ss_pred ccch-hhhcCccccCCC--CCCCCCCCCCCceEeeCCCCCCCCCCCCCCChhhhHHHHHhhcCCCCCC-------CCCC-
Q 012568 170 TLDK-RAFRGWIETDNP--WTNDDETDNGEMTYVNLLLNPERYTGYTGPSARRIWDAVYTENCPKWMA-------IVPA- 238 (460)
Q Consensus 170 tl~~-~~~~~w~~~d~~--~~~dDe~d~~~~~YVDLl~NPERyTGY~G~~A~rIW~aIY~ENCF~~~~-------~~~C- 238 (460)
+++. .++..|..+++. ||..|++++++++||||++||||||||+|++|+|||++||+||||++.. +++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~c~~dd~~~~~~~YVDL~~NPEryTGY~G~~a~rIW~aIY~ENCF~~~~~~~~~~~~~~C~ 159 (357)
T PF04137_consen 80 TLSDCDEFCDWEDHDDSDDFCDLDDESSEEGVYVDLLLNPERYTGYSGPSAHRIWRAIYEENCFKPGSPSDPSWLDGMCL 159 (357)
T ss_dssp SBGHCCCCCCCHHCCCCTTHHHHTT---TTEEEEECCCS------B-CHHHHHHHHHHHCT--B-TTSTTH-------HC
T ss_pred ChhhhhhhcCccccccchhcCcCCCCCCCCceEEEcccCcccccCCCCCcHHHHHHHHHHHhCCCCCccccccccccccH
Confidence 8775 677888877652 7765655668999999999999999999999999999999999997654 2678
Q ss_pred -----------CCCCcCCCCCCC----CC---CCCCCChHHHHHHHhhhchhhhhHHHHHHHHHHHHHHhhhhhhhhccC
Q 012568 239 -----------NPQTRPNPPAKT----RP---LRWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRAVTKATDYLEQAEYD 300 (460)
Q Consensus 239 -----------LHaSIsiHl~~~----~~---~~w~pNl~~F~~Rv~~~PeRl~NLYF~YllvLRAl~Ka~p~L~~~~f~ 300 (460)
||||||||||++ .+ |.||||+++|++|||+|||||+||||+|+||||||+||+|||.+++|+
T Consensus 160 EkrvfyrlISGlHaSIs~Hl~~~y~~~~~~~~g~w~pNl~~F~~R~g~~peRl~NLYF~y~~~lRAl~K~~p~l~~~~~~ 239 (357)
T PF04137_consen 160 EKRVFYRLISGLHASISIHLCAEYLNDETWEEGEWGPNLEEFMERFGEHPERLKNLYFTYLLVLRALAKAAPYLENYDFN 239 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTEEECCTSS-EEEE--HHHHHHHCTCHHHHHHHHHHHHHHHHHHHHCCHHHHHST---
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcCCcccccccCCCCHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999998 44 689999999999999999999999999999999999999999999999
Q ss_pred CCCccccHHHHHHHHHHhcCccccccCCCCCccccccCCCCcchHHHHHHHHhhhhhhhhcCccCCccccccchhhhHHH
Q 012568 301 TGNHEDDLKTVSLMKQLLYNPKLQAACPLPFDEAKLWQGQSGPELKQQIQEQFRNISALMDCVGCEKCRLWGKLQVLGLG 380 (460)
Q Consensus 301 tG~~~eD~~t~~lv~~Ll~~~~l~~scp~~FDE~~lF~~~~~~~LKeefr~~FrNISrIMDCVgCeKCRLWGKLQt~GLg 380 (460)
||+..+|.+|+++|.+|++... +||.+|||+.||+++.+.+||+|||+|||||||||||||||||||||||||+|||
T Consensus 240 tg~~~eD~~t~~~l~~ll~~~~---~~~~~FdE~~lf~~~~~~~Lk~efr~~F~NIs~IMDCV~CeKCRLWGKlQt~Glg 316 (357)
T PF04137_consen 240 TGNDEEDAETKKLLRDLLSSAK---SCPSHFDESSLFKGDEAPQLKEEFRQHFRNISRIMDCVGCEKCRLWGKLQTQGLG 316 (357)
T ss_dssp STTSCCCCCHHHHHHHHHHCCH---HS-CCCGTTTTTTTTCHHHHHHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHH
T ss_pred cCChhhhHHHHHHHHHHHHHHH---hccccCCHHHHcCCccHHHHHHHHHHHHhhHHHHHcCcccchheeechhhhhhHH
Confidence 9999999999999999998754 6999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccccccccccccchhhHHHHHHHHHHHHHHHHHHH
Q 012568 381 TALKILFSVEGQNHAAQSLQLQRNEVIALVNLLNRLSESVKIVH 424 (460)
Q Consensus 381 TALKILFs~~~~~~~~~~~~L~R~EiVALiNtf~RlS~SI~~v~ 424 (460)
|||||||+.++.. ..++|+|+|||||||||+|||+||++|+
T Consensus 317 TALKILf~~~~~~---~~~~L~R~E~VAL~Nt~~rlS~SI~~v~ 357 (357)
T PF04137_consen 317 TALKILFSDDEKQ---NPFKLQRNELVALFNTFGRLSESIEAVN 357 (357)
T ss_dssp HHHHHHCHHHCHH---CCCTSBHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCccCcC---CcCcccHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999998742 2589999999999999999999999986
No 3
>COG5061 ERO1 Oxidoreductin, endoplasmic reticulum membrane-associated protein involved in disulfide bond formation [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=100.00 E-value=1.9e-90 Score=690.67 Aligned_cols=320 Identities=32% Similarity=0.560 Sum_probs=276.0
Q ss_pred cccccC-cccchhhHHhhhhchhhHHhHHhhcCCcceeEeccCC-CCCCCCCC-CCCCCCCCCccccCCCCC-CCCCCCC
Q 012568 71 TGMVED-CCCDYETVDSVNGEVLHPLLQQLVTTPFFRYFKAKLW-CDCPFWPD-DGMCRLRDCSVCECPENE-FPEPFKK 146 (460)
Q Consensus 71 ~g~vdD-c~c~~etId~~N~~~l~P~L~~L~~t~fFRyfKVnL~-~~CPFW~d-d~~C~~~~C~V~~c~e~e-iP~~wr~ 146 (460)
.-+|.+ |+.++. |.++|.+ +.|+|-.|+++|||+||++||+ +.||||+| ++||.+++|+|..-+|.+ ||+.|+.
T Consensus 22 ~~iis~t~nss~~-i~~~ns~-vr~ll~~LteSDym~yyrlnLy~k~c~lw~ddn~mc~s~acnv~v~~e~d~vpkvW~~ 99 (425)
T COG5061 22 EIIISQTDNSSTG-IYQMNSK-VRSLLPVLTESDYMFYYRLNLYAKACTLWPDDNDMCVSKACNVTVRSEEDLVPKVWKD 99 (425)
T ss_pred hheecCcccccch-HHHHhhh-hhhhhHHhhhhhHHHHHHHHHHHhhCCCCCCcchhhhcccccceehhhhhcchhHhHh
Confidence 345555 777788 9999997 6999999999999999999999 79999998 589999999999999988 9999996
Q ss_pred CCCCCCC----CccccccCCCCcccccccchhhhcCccccCCCCCCCCCCCCCCceEeeCCCCCCCCCCCCCCChhhhHH
Q 012568 147 PFHILPS----DDLMCQEGKPEATVDRTLDKRAFRGWIETDNPWTNDDETDNGEMTYVNLLLNPERYTGYTGPSARRIWD 222 (460)
Q Consensus 147 ~~~~~~~----~~~~c~~~~~~~~vd~tl~~~~~~~w~~~d~~~~~dDe~d~~~~~YVDLl~NPERyTGY~G~~A~rIW~ 222 (460)
.-+...+ .++.|+..+ -.|..+|+.|.....+.+||||+.||||||||+|++|++||+
T Consensus 100 kls~f~ph~kkldq~c~~sk------------------~pd~~YCyvdn~~~~n~vyisLlenpErfTGY~g~hSa~IWr 161 (425)
T COG5061 100 KLSLFKPHSKKLDQFCSESK------------------CPDLSYCYVDNKSIFNDVYISLLENPERFTGYKGNHSAEIWR 161 (425)
T ss_pred hhhhhccchhhhhhcccccc------------------CCchhheeecCCCCCCcEEeehhcChHhhcCCCCCchHHHHH
Confidence 4222211 122333221 012236776666667899999999999999999999999999
Q ss_pred HHHhhcCCCCCCC------------CCCCCCCcCCCCCCC----CCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHHHH
Q 012568 223 AVYTENCPKWMAI------------VPANPQTRPNPPAKT----RPLRWGKNPELMYDRVLRYQDRVRNLYFTFLFVLRA 286 (460)
Q Consensus 223 aIY~ENCF~~~~~------------~~CLHaSIsiHl~~~----~~~~w~pNl~~F~~Rv~~~PeRl~NLYF~YllvLRA 286 (460)
.||+.|||..... .++|||||+||+|.+ .+|.|+||+++|+.||+++||||.|+||+|++|.+|
T Consensus 162 ~Iyeqncfd~~~~p~~Lekr~FyRlvSGfhaSIsTHls~~yln~~~g~w~pNldlfrarvgnfpdRieN~yfnYalv~~a 241 (425)
T COG5061 162 KIYEQNCFDTLLPPTLLEKRMFYRLVSGFHASISTHLSSFYLNVFFGTWLPNLDLFRARVGNFPDRIENFYFNYALVRSA 241 (425)
T ss_pred HHHHhhccccCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcceecCCHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 9999999975432 346999999999998 789999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhccCCCCccccHHHHHHHHHHhcCccccccCCCCCccccccCCCCcchHHHHHHHHhhhhhhhhcCccCC
Q 012568 287 VTKATDYLEQAEYDTGNHEDDLKTVSLMKQLLYNPKLQAACPLPFDEAKLWQGQSGPELKQQIQEQFRNISALMDCVGCE 366 (460)
Q Consensus 287 l~Ka~p~L~~~~f~tG~~~eD~~t~~lv~~Ll~~~~l~~scp~~FDE~~lF~~~~~~~LKeefr~~FrNISrIMDCVgCe 366 (460)
|.|+.++|....||..+. .+++..|.+|++.. ..-|..|||..+|+++.+..||++||+|||+|||||||||||
T Consensus 242 l~kI~~~l~sftFC~~~~---~e~~~k~~~lis~i---~~~~k~fne~q~fa~e~Si~lKd~frehfr~vs~lMdcVgCe 315 (425)
T COG5061 242 LGKIDVDLSSFTFCPTDK---DELSGKLSSLISAI---RAQGKTFNEIQPFALEKSIQLKDRFREHFRDVSRLMDCVGCE 315 (425)
T ss_pred HHhhccCCcccccCCccH---HHHHhHHHHHHHHH---HhccccccceecccCccchhhhHHHHHHHHhHHHHHHhcCch
Confidence 999999999999985432 27888899998743 245789999999999999999999999999999999999999
Q ss_pred ccccccchhhhHHHHHHHHhcccccccccccccccchhhHHHHHHHHHHHHHHHH
Q 012568 367 KCRLWGKLQVLGLGTALKILFSVEGQNHAAQSLQLQRNEVIALVNLLNRLSESVK 421 (460)
Q Consensus 367 KCRLWGKLQt~GLgTALKILFs~~~~~~~~~~~~L~R~EiVALiNtf~RlS~SI~ 421 (460)
||||||||||+|+||||||||+.+.+ .+.|++.|+|||+|||+|||+||+
T Consensus 316 kCrLWGkIQttGygtALKilfe~et~-----~fdLr~~E~vaLvntFdRLS~Sv~ 365 (425)
T COG5061 316 KCRLWGKIQTTGYGTALKILFESETQ-----LFDLRSLERVALVNTFDRLSVSVR 365 (425)
T ss_pred hhheeeeeeecchHHHHHHHhccccc-----cccccHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999998543 478999999999999999999997
No 4
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=38.78 E-value=16 Score=29.38 Aligned_cols=26 Identities=27% Similarity=0.678 Sum_probs=17.7
Q ss_pred HHHHHHHHhhhhhhhhcCccCCcccc
Q 012568 345 LKQQIQEQFRNISALMDCVGCEKCRL 370 (460)
Q Consensus 345 LKeefr~~FrNISrIMDCVgCeKCRL 370 (460)
++..+..+++.-.-..+||||.+|--
T Consensus 35 ~r~r~~~k~~~~~~~~~CVgCgrCv~ 60 (69)
T PF13746_consen 35 MRYRFMHKLRDRYGEGDCVGCGRCVR 60 (69)
T ss_pred cchhhhhhhhhhcCCccCCCcChHhh
Confidence 34444445555557889999999964
No 5
>PF15264 TSSC4: Tumour suppressing sub-chromosomal transferable candidate 4
Probab=37.83 E-value=13 Score=33.45 Aligned_cols=15 Identities=33% Similarity=0.649 Sum_probs=11.7
Q ss_pred eCCCCCCCCCCCCCC
Q 012568 201 NLLLNPERYTGYTGP 215 (460)
Q Consensus 201 DLl~NPERyTGY~G~ 215 (460)
|-+.||||||-|+=.
T Consensus 56 DYv~nP~KwTkYSL~ 70 (115)
T PF15264_consen 56 DYVRNPEKWTKYSLD 70 (115)
T ss_pred CCcCCcccceeeecC
Confidence 334999999999753
No 6
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=30.40 E-value=88 Score=23.05 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=22.6
Q ss_pred HHHHH-HhhhchhhhhHHHHHHHHHHHHHH
Q 012568 261 LMYDR-VLRYQDRVRNLYFTFLFVLRAVTK 289 (460)
Q Consensus 261 ~F~~R-v~~~PeRl~NLYF~YllvLRAl~K 289 (460)
-|.+| +..-..+|+|+-|.++++.-+|..
T Consensus 7 ~fieryfddiqkwirnit~cfal~vv~lvs 36 (40)
T PF13124_consen 7 AFIERYFDDIQKWIRNITFCFALLVVVLVS 36 (40)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777 456788999999999988777653
No 7
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=28.12 E-value=5.2 Score=33.98 Aligned_cols=16 Identities=25% Similarity=0.463 Sum_probs=4.7
Q ss_pred cCCcchHHHHHHHHHH
Q 012568 19 GLGRGLWSVWAVIVVL 34 (460)
Q Consensus 19 ~~~~~~~~~~~~~~~~ 34 (460)
..++|.|+++.|++|+
T Consensus 63 kKrrwlwLlikl~lV~ 78 (81)
T PF14812_consen 63 KKRRWLWLLIKLFLVF 78 (81)
T ss_dssp --------TTTTHCCH
T ss_pred ccchhHHHHHHHHHHh
Confidence 3556888777665553
No 8
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=21.52 E-value=41 Score=31.58 Aligned_cols=34 Identities=26% Similarity=0.216 Sum_probs=15.8
Q ss_pred Ccccchhhhhhh-HHHH-hccCCcchHHHHHHHHHH
Q 012568 1 MAKDKKRNDQIS-KEKK-KKGLGRGLWSVWAVIVVL 34 (460)
Q Consensus 1 ~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~ 34 (460)
||++++.|..-. ++.. +++.++..++++++++++
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~kkk~liii~~~~lll 36 (166)
T PRK12785 1 MAKKPKKAPAAEGGEGAAPPKKKKKLIIIAAAAVLL 36 (166)
T ss_pred CCCCcccccccccccccCCCCCcceEeeHHHHHHHH
Confidence 787766665333 2222 233445544444333333
No 9
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=19.61 E-value=45 Score=31.58 Aligned_cols=56 Identities=9% Similarity=0.102 Sum_probs=30.1
Q ss_pred CcchHHHHHHHHHHHHhhhhhcccCCccccccCCCCcccccCCCCCCccccccccC
Q 012568 21 GRGLWSVWAVIVVLFATAAVTTRTGSKIALFANNQTSCHCSSSSQDSVKYTGMVED 76 (460)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c~~~~~~~~~~~g~vdD 76 (460)
+|..+++++++++.+|++.+.+.-...++.|-.+++-=-=....++..++-|.|..
T Consensus 7 rRl~~v~~~~~~~~~a~~Lv~~al~~n~~yF~tpsEv~~~~~~~~~~~RlGG~V~~ 62 (155)
T PRK13159 7 QRLWLVIGVLTAAALAVTLIVLALQRNMSYLFTPSQVRAGAAAGYQQFRLGGMVKA 62 (155)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhCceEEECHHHHhcCCcccCCeEEEccEEec
Confidence 45655666666666666555554555567776655411111112355567777764
No 10
>PHA02450 hypothetical protein
Probab=19.47 E-value=29 Score=26.75 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=18.2
Q ss_pred CCCCCCCCCCCCChhhhHHHHHhhcC
Q 012568 204 LNPERYTGYTGPSARRIWDAVYTENC 229 (460)
Q Consensus 204 ~NPERyTGY~G~~A~rIW~aIY~ENC 229 (460)
.|||.||-|.|. -+--.||.=+-
T Consensus 5 in~egf~ryggd---c~cg~iyty~g 27 (53)
T PHA02450 5 INPEGFTRYGGD---CTCGPIYTYGG 27 (53)
T ss_pred cCcccceeeCCc---ccccceeeeCC
Confidence 699999999998 46777776554
Done!