BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012570
(460 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EFZ|A Chain A, Crystal Structure Of A 14-3-3 Protein From Cryptosporidium
Parvum (Cgd1_2980)
pdb|3EFZ|B Chain B, Crystal Structure Of A 14-3-3 Protein From Cryptosporidium
Parvum (Cgd1_2980)
pdb|3EFZ|C Chain C, Crystal Structure Of A 14-3-3 Protein From Cryptosporidium
Parvum (Cgd1_2980)
pdb|3EFZ|D Chain D, Crystal Structure Of A 14-3-3 Protein From Cryptosporidium
Parvum (Cgd1_2980)
Length = 268
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 88/205 (42%), Gaps = 42/205 (20%)
Query: 53 GKETCCIFRVPESLVEINEKAYQPHIVSM-GPYHHGKDHLKVIQEHKWRYLRSLLF---- 107
G+E + E ++++E AY+ + M G Y KD +KV+ E SL+
Sbjct: 13 GRENLYFQGITEKNMKLSEGAYRAKLADMVGNY---KDVIKVLTESSDFRDNSLILLLAG 69
Query: 108 RIKPCGVDLKDLFAAIASMEDKIRECYS------ETIEFSSRELVEMMVLDGCFVIELFC 161
++ +++ +I S E+K+R+ S + IE R+ E ++L+ VI
Sbjct: 70 SLRNRVTSIRNSLKSIKSQEEKLRKEKSLNNEFIQVIEDIKRDFEESILLESEDVI---- 125
Query: 162 IVGRLVPGDLDDPIFSMAWVFPF---LTRDLLRLENQIPYFVLQTLFELTVLSSRREQNP 218
R++ +L ++S F L DL+R + +I E+N
Sbjct: 126 ---RIIDDNL--LMYSEEGARAFCIKLKGDLMRYKAEIL--------------KDEEKNQ 166
Query: 219 PILAKLALEFFNYMVQRDVKVLEGY 243
I K A+EF+ +QR+ LE Y
Sbjct: 167 CI--KQAVEFYEDALQRERSFLEKY 189
>pdb|1W0E|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0F|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0G|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|2J0D|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2J0D|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2V0M|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|C Chain C, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|D Chain D, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|3NXU|A Chain A, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
pdb|3NXU|B Chain B, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
Length = 485
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 85/201 (42%), Gaps = 27/201 (13%)
Query: 82 GPYHHGKDHLKVIQEHKWRYLRSLLFRIKPCGVDLKDLFAAIASMEDKIRECYSETIEFS 141
GP K + + ++ +W+ LRSLL G LK++ IA D + E
Sbjct: 87 GPVGFMKSAISIAEDEEWKRLRSLLSPTFTSG-KLKEMVPIIAQYGDVLVRNLRREAE-- 143
Query: 142 SRELVEMMVLDGCFVIELFCIVGRLVPGD-LDDPIFSMAWVFPFL--TRDLLRLENQIPY 198
+ + V + + G + +++ V D L++P PF+ T+ LLR + P+
Sbjct: 144 TGKPVTLKDVFGAYSMDVITSTSFGVNIDSLNNP------QDPFVENTKKLLRFDFLDPF 197
Query: 199 FVLQTLFELTVLSSRREQNPPILAKLAL-----EFFNYMVQRDVKVLEGYYNLQRKHLLD 253
F+ T+F + PIL L + E N++ + ++ E +KH +D
Sbjct: 198 FLSITVFPFLI---------PILEVLNICVFPREVTNFLRKSVKRMKESRLEDTQKHRVD 248
Query: 254 LFRLSFIPCSQEKTREANQFL 274
+L I K E+++ L
Sbjct: 249 FLQL-MIDSQNSKETESHKAL 268
>pdb|3UA1|A Chain A, Crystal Structure Of The Cytochrome
P4503a4-Bromoergocryptine Complex
pdb|3TJS|A Chain A, Crystal Structure Of The Complex Between Human Cytochrome
P450 3a4 And Desthiazolylmethyloxycarbonyl Ritonavir
Length = 487
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 85/201 (42%), Gaps = 27/201 (13%)
Query: 82 GPYHHGKDHLKVIQEHKWRYLRSLLFRIKPCGVDLKDLFAAIASMEDKIRECYSETIEFS 141
GP K + + ++ +W+ LRSLL G LK++ IA D + E
Sbjct: 89 GPVGFMKSAISIAEDEEWKRLRSLLSPTFTSG-KLKEMVPIIAQYGDVLVRNLRREAE-- 145
Query: 142 SRELVEMMVLDGCFVIELFCIVGRLVPGD-LDDPIFSMAWVFPFL--TRDLLRLENQIPY 198
+ + V + + G + +++ V D L++P PF+ T+ LLR + P+
Sbjct: 146 TGKPVTLKDVFGAYSMDVITSTSFGVNIDSLNNP------QDPFVENTKKLLRFDFLDPF 199
Query: 199 FVLQTLFELTVLSSRREQNPPILAKLAL-----EFFNYMVQRDVKVLEGYYNLQRKHLLD 253
F+ T+F + PIL L + E N++ + ++ E +KH +D
Sbjct: 200 FLSITVFPFLI---------PILEVLNICVFPREVTNFLRKSVKRMKESRLEDTQKHRVD 250
Query: 254 LFRLSFIPCSQEKTREANQFL 274
+L I K E+++ L
Sbjct: 251 FLQL-MIDSQNSKETESHKAL 270
>pdb|1TQN|A Chain A, Crystal Structure Of Human Microsomal P450 3a4
Length = 486
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 85/201 (42%), Gaps = 27/201 (13%)
Query: 82 GPYHHGKDHLKVIQEHKWRYLRSLLFRIKPCGVDLKDLFAAIASMEDKIRECYSETIEFS 141
GP K + + ++ +W+ LRSLL G LK++ IA D + E
Sbjct: 88 GPVGFMKSAISIAEDEEWKRLRSLLSPTFTSG-KLKEMVPIIAQYGDVLVRNLRREAE-- 144
Query: 142 SRELVEMMVLDGCFVIELFCIVGRLVPGD-LDDPIFSMAWVFPFL--TRDLLRLENQIPY 198
+ + V + + G + +++ V D L++P PF+ T+ LLR + P+
Sbjct: 145 TGKPVTLKDVFGAYSMDVITSTSFGVNIDSLNNP------QDPFVENTKKLLRFDFLDPF 198
Query: 199 FVLQTLFELTVLSSRREQNPPILAKLAL-----EFFNYMVQRDVKVLEGYYNLQRKHLLD 253
F+ T+F + PIL L + E N++ + ++ E +KH +D
Sbjct: 199 FLSITVFPFLI---------PILEVLNICVFPREVTNFLRKSVKRMKESRLEDTQKHRVD 249
Query: 254 LFRLSFIPCSQEKTREANQFL 274
+L I K E+++ L
Sbjct: 250 FLQL-MIDSQNSKETESHKAL 269
>pdb|2WJS|A Chain A, Crystal Structure Of The Lg1-3 Region Of The Laminin
Alpha2 Chain
Length = 608
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 24/52 (46%)
Query: 266 KTREANQFLHLIPSAKKLHLAGINFKPRKATSFLDVRFRNGVLEIPTFTIDD 317
KT A+ L + SAK + I + K + DV G +E P TIDD
Sbjct: 40 KTAVADNLLFYLGSAKFIDFLAIEMRKGKVSFLWDVGSGVGRVEYPDLTIDD 91
>pdb|3AYR|A Chain A, Gh5 Endoglucanase Egla From A Ruminal Fungus
Length = 376
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 399 LFEGVNEYYRNDWHVRWAGFKYTYFDSPWSFLSAMAALIL 438
+FEG+NE +ND V W G W ++AM A+ L
Sbjct: 162 IFEGLNEPRKNDTPVEWTGGD----QEGWDAVNAMNAVFL 197
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.140 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,634,197
Number of Sequences: 62578
Number of extensions: 558292
Number of successful extensions: 1590
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1586
Number of HSP's gapped (non-prelim): 10
length of query: 460
length of database: 14,973,337
effective HSP length: 102
effective length of query: 358
effective length of database: 8,590,381
effective search space: 3075356398
effective search space used: 3075356398
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)