BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012570
         (460 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9SD53|Y3720_ARATH UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1
           SV=1
          Length = 476

 Score =  346 bits (888), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 188/456 (41%), Positives = 277/456 (60%), Gaps = 40/456 (8%)

Query: 31  RDWLASMEAKINTSPKFLNKSAGKETCCIFRVPESLVEINEKAYQPHIVSMGPYHHGKDH 90
           R++L+S   +    P  L +SAGKE+CCIFRVPES V +N KAY+P +VS+GPYH+G+ H
Sbjct: 24  RNYLSSGSKE----PVLLLESAGKESCCIFRVPESFVALNPKAYKPKVVSIGPYHYGEKH 79

Query: 91  LKVIQEHKWRYLRSLLFRIKPCGVDLKDLFAAIASMEDKIRECYSETIEFSSRELVEMMV 150
           L++IQ+HK R L+  L   K   V+   L  A+  +EDKIR+ YSE ++ +  +L+ MMV
Sbjct: 80  LQMIQQHKPRLLQLFLDEAKKKDVEENVLVKAVVDLEDKIRKSYSEELK-TGHDLMFMMV 138

Query: 151 LDGCFVIELFCIVGRLVPGDL---DDPIFSMAWVFPFLTRDLLRLENQIPYFVLQTLFEL 207
           LDGCF++ +F I+     G++   +DPIFS+ W+   +  DLL LENQ+P+FVLQTL+  
Sbjct: 139 LDGCFILMVFLIMS----GNIELSEDPIFSIPWLLSSIQSDLLLLENQVPFFVLQTLYVG 194

Query: 208 TVLSSRREQNPPILAKLALEFFNYMVQRDVKVLEGYYNLQRKHLLDLFRLSFIPCSQEKT 267
           + +    + N     ++A  FF   + ++    E + N + KHLLDL R +F+P + E  
Sbjct: 195 SKIGVSSDLN-----RIAFHFFKNPIDKEGSYWEKHRNYKAKHLLDLIRETFLPNTSESD 249

Query: 268 REANQFLH--------------------LIPSAKKLHLAGINFKPR--KATSFLDVRFRN 305
           + ++  +                     LI SAK+L L GI F+ R  K  S L+VR + 
Sbjct: 250 KASSPHVQVQLHEGKSGNVPSVDSKAVPLILSAKRLRLQGIKFRLRRSKEDSILNVRLKK 309

Query: 306 GVLEIPTFTIDDFTSSLFLNFVAYEQCYRHCSKHITTYATLMGCLINTPADAGFLSDHK- 364
             L+IP    D F SS FLN VA+EQ Y   S  ITTY   MGCL+N   D  FL + K 
Sbjct: 310 NKLQIPQLRFDGFISSFFLNCVAFEQFYTDSSNEITTYIVFMGCLLNNEEDVTFLRNDKL 369

Query: 365 VIENYFGTDEEVARFFNVVGKDVAFDIHNNYLSELFEGVNEYYRNDWHVRWAGFKYTYFD 424
           +IEN+FG++ EV+ FF  + KDV F++  +YL+ +F+GVNEY +  ++  WAGF++T+F+
Sbjct: 370 IIENHFGSNNEVSEFFKTISKDVVFEVDTSYLNNVFKGVNEYTKKWYNGLWAGFRHTHFE 429

Query: 425 SPWSFLSAMAALILLFLTMIQAFFAGYGYIRPPHSN 460
           SPW+FLS+ A L ++ LTM+Q+  A   Y+     N
Sbjct: 430 SPWTFLSSCAVLFVILLTMLQSTVAILSYLNDKKGN 465


>sp|P0C897|Y3264_ARATH Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana
           GN=At3g02645 PE=3 SV=1
          Length = 529

 Score = 76.6 bits (187), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 100/209 (47%), Gaps = 11/209 (5%)

Query: 56  TCCIFRVPESLVEINEKAYQPHIVSMGPYHHGKDHLKVIQEHKWRYLRSLLFRIKPCGVD 115
           T  IF VP++L+  +  +Y PH VS+GPYH  K  L  ++ +K    R +  R +     
Sbjct: 42  TVSIFNVPKALMCSHPDSYTPHRVSIGPYHCLKPELHEMERYKLMIARKI--RNQYNSFR 99

Query: 116 LKDLFAAIASMEDKIRECYSETIEFSSRELVEMMVLDGCFVIELFCIVGRLVPGDLDDPI 175
             DL   + SME KIR CY + I F+   L+ +M +D  F+IE   I        L + +
Sbjct: 100 FHDLVEKLQSMEIKIRACYHKYIGFNGETLLWIMAVDSSFLIEFLKIYSFRKVETLINRV 159

Query: 176 FSMAWVFPFLTRDLLRLENQIPYFVLQTLFELTVLSSRREQN--PPILAKLALEFFNYMV 233
                    + RD++ +ENQIP FVL+   E  + S+    +    +L  L  +    ++
Sbjct: 160 GHNE-----ILRDIMMIENQIPLFVLRKTLEFQLESTESADDLLLSVLTGLCKDLSPLVI 214

Query: 234 Q-RDVKVLEGYYNLQRKHLLDLFRLSFIP 261
           +  D ++L+  +  +  H+LD      +P
Sbjct: 215 KFDDDQILKAQFQ-ECNHILDFLYQMIVP 242



 Score = 72.4 bits (176), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 65/153 (42%), Gaps = 3/153 (1%)

Query: 277 IPSAKKLHLAGINFKPRKATSFLDVRF--RNGVLEIPTFTIDDFTSSLFLNFVAYEQCYR 334
           IPS   LH AG+ FKP    +   V F   +G   +P   +D  T ++  N VAYE    
Sbjct: 345 IPSVSDLHKAGVRFKPTAHGNISTVTFDSNSGQFYLPVINLDINTETVLRNLVAYEATNT 404

Query: 335 HCSKHITTYATLMGCLINTPADAGFLSDHKVIENYFGTDEEVARFFNVVGKDVAFDIHNN 394
                 T Y  L+  +I++  D   L +  V+ +   +D+E A  +N + K V       
Sbjct: 405 SGPLVFTRYTELINGIIDSEEDVRLLREQGVLVSRLKSDQEAAEMWNGMSKSVRL-TKVG 463

Query: 395 YLSELFEGVNEYYRNDWHVRWAGFKYTYFDSPW 427
           +L +  E VN YY   W V+       Y    W
Sbjct: 464 FLDKTIEDVNRYYTGRWKVKIGRLVEVYVYGSW 496


>sp|Q07105|GDF9_MOUSE Growth/differentiation factor 9 OS=Mus musculus GN=Gdf9 PE=2 SV=2
          Length = 441

 Score = 35.4 bits (80), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%)

Query: 200 VLQTLFELTVLSSRREQNPPILAKLALEFFNYMVQRDVKVLEGYYNLQRKHLLDLFRLSF 259
           +L  LF+  VLS RR + P +       ++   + +     EG     R HL +  RL F
Sbjct: 61  LLPPLFK--VLSDRRGETPKLQPDSRALYYMKKLYKTYATKEGVPKPSRSHLYNTVRL-F 117

Query: 260 IPCSQEKTREANQFLHLIP 278
            PC+Q++   +NQ    +P
Sbjct: 118 SPCAQQEQAPSNQVTGPLP 136


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.326    0.140    0.435 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 168,668,302
Number of Sequences: 539616
Number of extensions: 6990407
Number of successful extensions: 20320
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 20306
Number of HSP's gapped (non-prelim): 7
length of query: 460
length of database: 191,569,459
effective HSP length: 121
effective length of query: 339
effective length of database: 126,275,923
effective search space: 42807537897
effective search space used: 42807537897
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 63 (28.9 bits)