Query 012570
Match_columns 460
No_of_seqs 177 out of 666
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 04:01:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012570.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012570hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03140 DUF247: Plant protein 100.0 1E-109 2E-114 862.5 33.8 379 59-442 1-391 (391)
2 PRK10404 hypothetical protein; 65.8 6 0.00013 33.6 2.9 19 425-444 79-97 (101)
3 PF14770 TMEM18: Transmembrane 64.4 6.9 0.00015 34.4 3.1 50 400-452 55-104 (123)
4 PHA02680 ORF090 IMV phosphoryl 61.1 17 0.00037 29.9 4.5 33 425-457 43-75 (91)
5 PRK10132 hypothetical protein; 59.0 9.3 0.0002 32.8 2.9 24 420-444 79-103 (108)
6 PF07438 DUF1514: Protein of u 57.3 12 0.00025 29.0 2.8 22 427-448 2-23 (66)
7 PF12911 OppC_N: N-terminal TM 56.7 9.2 0.0002 28.2 2.2 32 420-451 10-41 (56)
8 PHA03048 IMV membrane protein; 48.6 36 0.00078 28.1 4.5 33 425-457 41-74 (93)
9 PF05767 Pox_A14: Poxvirus vir 48.1 37 0.0008 28.2 4.5 32 425-456 42-74 (92)
10 PHA02898 virion envelope prote 46.7 39 0.00085 27.9 4.5 32 425-456 42-74 (92)
11 PF05421 DUF751: Protein of un 38.0 57 0.0012 25.1 4.0 31 422-452 30-60 (61)
12 COG4575 ElaB Uncharacterized c 37.6 31 0.00067 29.4 2.7 23 421-444 77-100 (104)
13 PF10961 DUF2763: Protein of u 34.9 58 0.0013 27.1 3.9 30 424-453 13-45 (91)
14 PF09069 EF-hand_3: EF-hand; 31.4 1E+02 0.0022 25.6 4.8 54 97-152 3-76 (90)
15 PF14579 HHH_6: Helix-hairpin- 30.9 1.5E+02 0.0033 24.1 5.8 83 287-374 1-87 (90)
16 KOG4134 DNA-dependent RNA poly 26.9 50 0.0011 32.0 2.5 46 52-108 20-65 (253)
17 PHA02103 hypothetical protein 26.6 1.1E+02 0.0024 26.3 4.1 62 303-367 30-102 (135)
18 KOG3110 Riboflavin kinase [Coe 26.2 62 0.0013 29.0 2.7 62 74-135 65-138 (153)
19 PF15103 G0-G1_switch_2: G0/G1 26.1 64 0.0014 27.3 2.7 27 429-455 28-54 (102)
20 PF05957 DUF883: Bacterial pro 25.9 74 0.0016 26.1 3.1 20 424-444 71-90 (94)
21 PF00690 Cation_ATPase_N: Cati 24.3 2.1E+02 0.0046 21.7 5.3 58 372-437 5-68 (69)
22 PF09820 AAA-ATPase_like: Pred 23.9 1.1E+02 0.0023 30.7 4.4 59 370-433 223-282 (284)
23 PF11446 DUF2897: Protein of u 23.0 1E+02 0.0022 23.2 3.0 21 425-445 4-24 (55)
24 PF02468 PsbN: Photosystem II 22.8 85 0.0018 22.5 2.4 26 432-457 5-30 (43)
25 cd00948 FBP_aldolase_I_a Fruct 22.3 98 0.0021 31.7 3.7 82 357-445 82-166 (330)
26 cd00925 Cyt_c_Oxidase_VIa Cyto 22.1 91 0.002 25.7 2.8 26 425-450 14-39 (86)
27 PF04531 Phage_holin_1: Bacter 21.1 1.3E+02 0.0027 24.6 3.5 23 423-445 8-30 (84)
28 PF04971 Lysis_S: Lysis protei 20.5 1.4E+02 0.003 23.5 3.4 24 422-445 28-51 (68)
No 1
>PF03140 DUF247: Plant protein of unknown function; InterPro: IPR004158 The function of the plant proteins constituting this family is unknown.
Probab=100.00 E-value=1.1e-109 Score=862.45 Aligned_cols=379 Identities=45% Similarity=0.790 Sum_probs=338.9
Q ss_pred eeecCchhhccCcCCccccEEEeccCCCCCcccchHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHhhhhccc
Q 012570 59 IFRVPESLVEINEKAYQPHIVSMGPYHHGKDHLKVIQEHKWRYLRSLLFRIKPCGVDLKDLFAAIASMEDKIRECYSETI 138 (460)
Q Consensus 59 I~rVP~~lr~~n~~aY~P~~VSIGPyHhg~~~L~~ME~~K~~~l~~~l~r~~~~~~~l~~~~~~i~~~e~~~R~cY~e~~ 138 (460)
|||||+++|++|++||+|++|||||||||+++|+.||++||+|++.|++|....+.++++++++|+++|++||+||++++
T Consensus 1 I~rVP~~lr~~~~~~Y~P~~VsIGPyH~g~~~L~~mE~~K~~~l~~~l~~~~~~~~~l~~~~~~i~~~e~~~R~~Y~~~~ 80 (391)
T PF03140_consen 1 IYRVPESLRDVNPKAYTPQVVSIGPYHHGKPDLQEMEEHKLRYLHRFLKRSGAPAESLEDYVEAIRSLEEEARACYAEDI 80 (391)
T ss_pred CcCCCHHHccCCchhcCCceEEeCCCCCCchhhhhhHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHhcccc
Confidence 89999999999999999999999999999999999999999999999999532248999999999999999999999999
Q ss_pred C-CChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC-ccccccchhhHhhHHhhhccCcchHHHHHHHHHhhhccCCCC
Q 012570 139 E-FSSRELVEMMVLDGCFVIELFCIVGRLVPGDLDDP-IFSMAWVFPFLTRDLLRLENQIPYFVLQTLFELTVLSSRREQ 216 (460)
Q Consensus 139 ~-~~~~eF~~MmllDgCFiLe~l~~~~~~~~~~~~D~-i~~~~~~~~~i~~DllLLENQiPffVL~~L~~~~~~~~~~~~ 216 (460)
. +++++|++||++|||||||+|..+.. ....+|| ++..+|....|.+||+|||||||||||++||++. ......
T Consensus 81 ~~~~~~~f~~MmllDgCFlLe~~~~~~~--~~~~~d~~~~~~~~~~~~i~~Dl~LLENQIPffVL~~L~~l~--~~~~~~ 156 (391)
T PF03140_consen 81 DDMSSDEFVEMMLLDGCFLLEFFLRYSR--SDGENDPGIFSRPWLLSAIRRDLLLLENQIPFFVLEKLFELL--FGSKSD 156 (391)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhhh--ccccccccccccccccccchhheeeecccchHHHHHHHHHHh--cccccC
Confidence 8 99999999999999999999998875 2345688 8888999999999999999999999999999999 533345
Q ss_pred CchHHHHHHHHHhcccccccchhhcccccCcCCChHHHHHHhhcCCCcc----ccccc-----ccccccCCCHHHHHHcC
Q 012570 217 NPPILAKLALEFFNYMVQRDVKVLEGYYNLQRKHLLDLFRLSFIPCSQE----KTREA-----NQFLHLIPSAKKLHLAG 287 (460)
Q Consensus 217 ~~~~l~~l~~~ff~~~~~~~~~~~~~~~~~~~~HlLdL~~~~~~p~~~~----~~~~~-----~~~~~~~~sAteL~~aG 287 (460)
...++.+++.+||........+. ......+++|||||+|.+++|+... +..+. ...+..|||||||++||
T Consensus 157 ~~~~l~~l~~~~~~~~~~~~~~~-~~~~~~~~~HlL~L~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~sA~eL~~aG 235 (391)
T PF03140_consen 157 VDESLIDLVLKFFYKHWPSWPPD-EPISNPEPHHLLDLLRMSLLPSPPSSSPTPPRPPRSNGEKPPPKRIRSATELREAG 235 (391)
T ss_pred ccchHHHHHHhHhcccccccccc-ccccCCCCCChHHHHHHHhccccCCcccCCCCcccccccccccccCCCHHHHHhCC
Confidence 67899999999993221111111 1234556899999999999993211 11111 11357899999999999
Q ss_pred cEeeeCCCC-CcceeEEcCceeecceEEeccCccchhhhHHHHHHhhccCCcchhhHHHHHhhhcCChhhHHhhhhcCce
Q 012570 288 INFKPRKAT-SFLDVRFRNGVLEIPTFTIDDFTSSLFLNFVAYEQCYRHCSKHITTYATLMGCLINTPADAGFLSDHKVI 366 (460)
Q Consensus 288 VkFk~~~~~-~llDI~F~~G~L~IP~L~id~~Te~llrNLiA~Eq~~~~~~~~vtsYv~fM~~LI~t~~DV~lL~~kGII 366 (460)
|+||++++. +++||+|++|+|+||+|.||++|+++||||||||||++..+.+||||+.||++||+|++||++|+++|||
T Consensus 236 V~fk~~~~~~~~lDv~F~~G~L~IP~L~id~~T~~~lrNLiA~Eq~~~~~~~~vtsY~~fm~~Li~t~~DV~lL~~kgIi 315 (391)
T PF03140_consen 236 VKFKPSETDRSLLDVKFKKGVLEIPPLYIDDNTESLLRNLIAFEQCHPPTGSYVTSYVFFMDSLINTPEDVELLRRKGII 315 (391)
T ss_pred cEEeeccCccccccceecCCEEEeCeEEECCcchHHHhHHHHHHHHhccCCchHhHHHHHHHHHhCcHhhHHHHHhCCeE
Confidence 999999876 5999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCChHHHHHHHHHhccCcccCCCCchHHHHHHHHHhHhcCchhhhhhhhccccccChHHHHHHHHHHHHHHHH
Q 012570 367 ENYFGTDEEVARFFNVVGKDVAFDIHNNYLSELFEGVNEYYRNDWHVRWAGFKYTYFDSPWSFLSAMAALILLFLT 442 (460)
Q Consensus 367 ~n~lgsdeeva~lFn~L~~~~~~~~~~~y~~~v~~~ln~~~~~rw~~w~a~l~~~yf~nPW~~is~vaAv~lL~lT 442 (460)
+|++|+|+||++|||+||++++++.+++||.+++++||+||++||++|+|+++|+||+|||+++|++||+++|+||
T Consensus 316 ~~~l~~d~eva~~F~~L~~~v~~~~~~~~~~~v~~~l~~~~~~~~~~~~a~l~~~yf~~pw~~is~~aa~~ll~lT 391 (391)
T PF03140_consen 316 VNWLGSDEEVAKLFNGLCKGVVFDVDDSYYSDVCEDLNKYYQSRWNRWWAWLRRKYFSNPWTFISLVAAIILLLLT 391 (391)
T ss_pred ecCCCCcHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHhhhhcCCcHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999887788999999999999999999999999999999999999999999999997
No 2
>PRK10404 hypothetical protein; Provisional
Probab=65.76 E-value=6 Score=33.56 Aligned_cols=19 Identities=26% Similarity=0.513 Sum_probs=14.5
Q ss_pred ChHHHHHHHHHHHHHHHHHH
Q 012570 425 SPWSFLSAMAALILLFLTMI 444 (460)
Q Consensus 425 nPW~~is~vaAv~lL~lTi~ 444 (460)
|||..+++.| .+.|++.++
T Consensus 79 ~Pw~avGiaa-gvGlllG~L 97 (101)
T PRK10404 79 KPWQGIGVGA-AVGLVLGLL 97 (101)
T ss_pred CcHHHHHHHH-HHHHHHHHH
Confidence 9999998654 477777765
No 3
>PF14770 TMEM18: Transmembrane protein 18
Probab=64.44 E-value=6.9 Score=34.43 Aligned_cols=50 Identities=32% Similarity=0.367 Sum_probs=38.3
Q ss_pred HHHHHhHhcCchhhhhhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012570 400 FEGVNEYYRNDWHVRWAGFKYTYFDSPWSFLSAMAALILLFLTMIQAFFAGYG 452 (460)
Q Consensus 400 ~~~ln~~~~~rw~~w~a~l~~~yf~nPW~~is~vaAv~lL~lTi~Qtv~sv~~ 452 (460)
-|.+|++..+.| +.--+++||..--.+||++-++=+|+.+++..+..+++
T Consensus 55 aE~iN~~~a~nW---~~Fs~qnYFDs~G~Fisvv~s~PlLl~~~ii~~~~l~~ 104 (123)
T PF14770_consen 55 AEYINEYAARNW---RSFSKQNYFDSSGVFISVVFSAPLLLNCLIILVNWLYQ 104 (123)
T ss_pred HHHHHHHHHHHH---HHHhhccCcCCCCeeehHHHHHhHHHHHHHHHHHHHHH
Confidence 478999998877 33334699998899999998887777777776665554
No 4
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=61.08 E-value=17 Score=29.89 Aligned_cols=33 Identities=18% Similarity=0.166 Sum_probs=27.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 012570 425 SPWSFLSAMAALILLFLTMIQAFFAGYGYIRPP 457 (460)
Q Consensus 425 nPW~~is~vaAv~lL~lTi~Qtv~sv~~~~~~~ 457 (460)
++|+++|.++-++..++++-=-+||.+.|..|+
T Consensus 43 ~~wRalSii~FIlG~vl~lGilifs~y~~C~~~ 75 (91)
T PHA02680 43 YVWRALSVTCFIVGAVLLLGLFVFSMYRKCSGS 75 (91)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 479999999888888888888899999966554
No 5
>PRK10132 hypothetical protein; Provisional
Probab=59.00 E-value=9.3 Score=32.82 Aligned_cols=24 Identities=25% Similarity=0.635 Sum_probs=16.8
Q ss_pred cccc-cChHHHHHHHHHHHHHHHHHH
Q 012570 420 YTYF-DSPWSFLSAMAALILLFLTMI 444 (460)
Q Consensus 420 ~~yf-~nPW~~is~vaAv~lL~lTi~ 444 (460)
.+|. .|||+.+++.|+ +++++.++
T Consensus 79 ~~~V~~~Pw~svgiaag-vG~llG~L 103 (108)
T PRK10132 79 DTFVRERPWCSVGTAAA-VGIFIGAL 103 (108)
T ss_pred HHHHHhCcHHHHHHHHH-HHHHHHHH
Confidence 4455 489999986544 67777665
No 6
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=57.34 E-value=12 Score=29.01 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012570 427 WSFLSAMAALILLFLTMIQAFF 448 (460)
Q Consensus 427 W~~is~vaAv~lL~lTi~Qtv~ 448 (460)
|-++|.+.|+++|++-.+|+-.
T Consensus 2 WIiiSIvLai~lLI~l~~ns~l 23 (66)
T PF07438_consen 2 WIIISIVLAIALLISLSVNSEL 23 (66)
T ss_pred hhhHHHHHHHHHHHHHhhhHHH
Confidence 9999999999999999998753
No 7
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=56.73 E-value=9.2 Score=28.17 Aligned_cols=32 Identities=19% Similarity=0.440 Sum_probs=25.0
Q ss_pred cccccChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012570 420 YTYFDSPWSFLSAMAALILLFLTMIQAFFAGY 451 (460)
Q Consensus 420 ~~yf~nPW~~is~vaAv~lL~lTi~Qtv~sv~ 451 (460)
+.+++|+...+|++.-+++++++++..+++=+
T Consensus 10 ~~f~~nk~a~~gl~il~~~vl~ai~~p~~~p~ 41 (56)
T PF12911_consen 10 RRFRRNKLAVIGLIILLILVLLAIFAPFISPY 41 (56)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 44778999999888888888888887776544
No 8
>PHA03048 IMV membrane protein; Provisional
Probab=48.57 E-value=36 Score=28.13 Aligned_cols=33 Identities=24% Similarity=0.544 Sum_probs=27.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCCC
Q 012570 425 SPWSFLSAMAALILLFLTMIQAFFAGYG-YIRPP 457 (460)
Q Consensus 425 nPW~~is~vaAv~lL~lTi~Qtv~sv~~-~~~~~ 457 (460)
++|+++|.++-++..++|+-=.+||.+. |..|+
T Consensus 41 ~~wRalsii~FIlgivl~lG~~ifsmy~r~C~~~ 74 (93)
T PHA03048 41 TVWRALSGIAFVLGIVMTIGMLIYSMWGRYCTPS 74 (93)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 5799999999988888888888999999 55554
No 9
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=48.15 E-value=37 Score=28.16 Aligned_cols=32 Identities=34% Similarity=0.656 Sum_probs=26.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCC
Q 012570 425 SPWSFLSAMAALILLFLTMIQAFFAGYG-YIRP 456 (460)
Q Consensus 425 nPW~~is~vaAv~lL~lTi~Qtv~sv~~-~~~~ 456 (460)
.+|+++|.++-++..++++-=-+||.+. |.+|
T Consensus 42 ~~wRalSii~FI~giil~lG~~i~s~ygr~C~~ 74 (92)
T PF05767_consen 42 YTWRALSIICFILGIILTLGIVIFSMYGRYCRP 74 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 4899999999999999999888999994 4444
No 10
>PHA02898 virion envelope protein; Provisional
Probab=46.71 E-value=39 Score=27.86 Aligned_cols=32 Identities=22% Similarity=0.431 Sum_probs=25.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCC
Q 012570 425 SPWSFLSAMAALILLFLTMIQAFFAGYG-YIRP 456 (460)
Q Consensus 425 nPW~~is~vaAv~lL~lTi~Qtv~sv~~-~~~~ 456 (460)
++|+++|.++-++..++++-=.+||.+. |..|
T Consensus 42 ~~wRalSii~FIlgivl~lG~~ifs~y~r~C~~ 74 (92)
T PHA02898 42 SALRSISIISFILAIILILGIIFFKGYNMFCGG 74 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 5799999888888888888888899988 4444
No 11
>PF05421 DUF751: Protein of unknown function (DUF751); InterPro: IPR008470 This family, Ycf33, contains several plant, cyanobacterial and algal chlorplast encoded proteins of unknown function. The family is exclusively found in phototrophic organisms and may therefore play a role in photosynthesis.
Probab=38.01 E-value=57 Score=25.14 Aligned_cols=31 Identities=19% Similarity=0.256 Sum_probs=26.7
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012570 422 YFDSPWSFLSAMAALILLFLTMIQAFFAGYG 452 (460)
Q Consensus 422 yf~nPW~~is~vaAv~lL~lTi~Qtv~sv~~ 452 (460)
-++||-+.++++++++..+..+.+|+-+++.
T Consensus 30 llk~p~tai~~i~~~~~~~~~l~~tL~aMlg 60 (61)
T PF05421_consen 30 LLKNPVTAIALIGILIGGFIFLYFTLRAMLG 60 (61)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4578999999999999999999999887753
No 12
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=37.58 E-value=31 Score=29.40 Aligned_cols=23 Identities=30% Similarity=0.694 Sum_probs=15.3
Q ss_pred ccc-cChHHHHHHHHHHHHHHHHHH
Q 012570 421 TYF-DSPWSFLSAMAALILLFLTMI 444 (460)
Q Consensus 421 ~yf-~nPW~~is~vaAv~lL~lTi~ 444 (460)
+|. -|||..|++-|| +.|++.++
T Consensus 77 ~yV~e~PWq~VGvaAa-VGlllGlL 100 (104)
T COG4575 77 DYVRENPWQGVGVAAA-VGLLLGLL 100 (104)
T ss_pred HHHHcCCchHHHHHHH-HHHHHHHH
Confidence 454 489999987666 45555543
No 13
>PF10961 DUF2763: Protein of unknown function (DUF2763); InterPro: IPR024491 This entry represents an eukaryotic family of selenoproteins. It includes SelK, which seems to play an important role in protecting cells from endoplasmic reticulum stress-induced apoptosis [] and SelG, which may be involved in regulating the redox state of the cell [].
Probab=34.92 E-value=58 Score=27.07 Aligned_cols=30 Identities=20% Similarity=0.415 Sum_probs=20.8
Q ss_pred cChHH---HHHHHHHHHHHHHHHHHHHHHHhcc
Q 012570 424 DSPWS---FLSAMAALILLFLTMIQAFFAGYGY 453 (460)
Q Consensus 424 ~nPW~---~is~vaAv~lL~lTi~Qtv~sv~~~ 453 (460)
+.||. ++-++-+++-+|..++||+++.-..
T Consensus 13 rspWrls~I~d~Fwgi~~fI~lFF~Tl~~p~~~ 45 (91)
T PF10961_consen 13 RSPWRLSRITDFFWGIINFIVLFFQTLFSPDSS 45 (91)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 35673 5566667777778888888886544
No 14
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=31.38 E-value=1e+02 Score=25.58 Aligned_cols=54 Identities=22% Similarity=0.492 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhhhCCCC----CCHHHHHHHHH-------------HHHHHHHhhhhc---ccCCChHHHHHHHHHH
Q 012570 97 HKWRYLRSLLFRIKPCG----VDLKDLFAAIA-------------SMEDKIRECYSE---TIEFSSRELVEMMVLD 152 (460)
Q Consensus 97 ~K~~~l~~~l~r~~~~~----~~l~~~~~~i~-------------~~e~~~R~cY~e---~~~~~~~eF~~MmllD 152 (460)
.|.||+-+++... +| ..++.++..+. ..|..+|+|+.. .-+++-++|+..|..|
T Consensus 3 dKyRylFslisd~--~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 3 DKYRYLFSLISDS--NGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQLSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHHS-T--TS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTTT-S-B-HHHHHHHHHT-
T ss_pred HHHHHHHHHHcCC--CCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccCCCCccCHHHHHHHHHhC
Confidence 5899999998764 23 23555544332 368889999976 4568889998888765
No 15
>PF14579 HHH_6: Helix-hairpin-helix motif; PDB: 2HPM_A 2HPI_A 3E0D_A 3F2C_A 3F2B_A 3F2D_A 2HQA_A 2HNH_A.
Probab=30.94 E-value=1.5e+02 Score=24.07 Aligned_cols=83 Identities=11% Similarity=0.132 Sum_probs=55.2
Q ss_pred CcEeeeCC-CCCcceeEEcC--ceeecceEEeccCccchhhhHHHHHHhhccCCcchhhHHHHHhhh-cCChhhHHhhhh
Q 012570 287 GINFKPRK-ATSFLDVRFRN--GVLEIPTFTIDDFTSSLFLNFVAYEQCYRHCSKHITTYATLMGCL-INTPADAGFLSD 362 (460)
Q Consensus 287 GVkFk~~~-~~~llDI~F~~--G~L~IP~L~id~~Te~llrNLiA~Eq~~~~~~~~vtsYv~fM~~L-I~t~~DV~lL~~ 362 (460)
||++.+.+ ..|-.+-+.++ +.+.+|--.|..-.+.....+++-=+ ...++|+.-|...+ --+..+++.|.+
T Consensus 1 Gi~v~ppdIn~S~~~~~~~~~~~~Ir~gl~~Ikglg~~~a~~I~~~R~-----~g~f~s~~df~~R~~~i~~~~le~Li~ 75 (90)
T PF14579_consen 1 GIKVLPPDINKSDADFTVEDKNNAIRLGLSAIKGLGEEVAEKIVEERE-----NGPFKSLEDFIQRLPKINKRQLEALIK 75 (90)
T ss_dssp T-EEE---TTT-BSS-EEETT-TEEE-BGGGSTTS-HHHHHHHHHHHH-----CSS-SSHHHHHHHS-TS-HHHHHHHHH
T ss_pred CCEEeCCeecccCCCeEEECCCCEEeehHhhcCCCCHHHHHHHHHhHh-----cCCCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 77777754 33444555665 79999999999888887777765433 34578888888888 778999999999
Q ss_pred cCceeccCCChH
Q 012570 363 HKVIENYFGTDE 374 (460)
Q Consensus 363 kGII~n~lgsde 374 (460)
.|.+...-+++.
T Consensus 76 aGafd~~~~~~R 87 (90)
T PF14579_consen 76 AGAFDSFGKSRR 87 (90)
T ss_dssp TTTTTTCSSCHH
T ss_pred CCCccccChhhh
Confidence 999986554443
No 16
>KOG4134 consensus DNA-dependent RNA polymerase I [Transcription]
Probab=26.88 E-value=50 Score=32.04 Aligned_cols=46 Identities=17% Similarity=0.222 Sum_probs=33.4
Q ss_pred CCCCcceeeecCchhhccCcCCccccEEEeccCCCCCcccchHHHHHHHHHHHHHhh
Q 012570 52 AGKETCCIFRVPESLVEINEKAYQPHIVSMGPYHHGKDHLKVIQEHKWRYLRSLLFR 108 (460)
Q Consensus 52 ~~~~~~~I~rVP~~lr~~n~~aY~P~~VSIGPyHhg~~~L~~ME~~K~~~l~~~l~r 108 (460)
..+..-|++++|-.+ .+|+||||-.++.-..||+|=-.-+.....+
T Consensus 20 ~nsp~sclv~~t~dl-----------hlalaP~yl~npl~~~i~ehld~~vl~y~~~ 65 (253)
T KOG4134|consen 20 ANSPESCLVCITTDL-----------HLALAPYYLANPLHALIEEHLDTKVLFYDSG 65 (253)
T ss_pred hcCCcceEEEeeehe-----------eeeecchhhcchhHHHHHHHhhHHHhhhccC
Confidence 345567999999754 6999999998876557887765555555444
No 17
>PHA02103 hypothetical protein
Probab=26.62 E-value=1.1e+02 Score=26.26 Aligned_cols=62 Identities=16% Similarity=0.288 Sum_probs=44.2
Q ss_pred EcCce--eecceEEeccCccchhhhHHHHHHhhccC-----C----cchhhHHHHHhhhcCChhhHHhhhhcCcee
Q 012570 303 FRNGV--LEIPTFTIDDFTSSLFLNFVAYEQCYRHC-----S----KHITTYATLMGCLINTPADAGFLSDHKVIE 367 (460)
Q Consensus 303 F~~G~--L~IP~L~id~~Te~llrNLiA~Eq~~~~~-----~----~~vtsYv~fM~~LI~t~~DV~lL~~kGII~ 367 (460)
|++.+ -+||.+..|....-+-|=.+-+|.|.... + .+|-+|--.. -..+|-|++-.+-||=.
T Consensus 30 f~d~t~~~e~pai~~~~~~~ei~rl~~f~~kck~~yp~gkgg~~df~~ipdyyryf---~ee~e~ie~we~ygve~ 102 (135)
T PHA02103 30 FSDATLEYEIPAIDADRTKAEIVRLITFMDKCKAEYPRGKGGQADFNHIPDYYRYF---GEEAEGVELWEEYGVEG 102 (135)
T ss_pred cCcceeEEeccccccchhhHHHHHHHHHHHHHHhhCCCCCCCccccccChHHHHHh---cccchhhhHHHHhCcce
Confidence 34455 58999999999999999999999997532 1 3455665443 35666777777777644
No 18
>KOG3110 consensus Riboflavin kinase [Coenzyme transport and metabolism]
Probab=26.16 E-value=62 Score=28.97 Aligned_cols=62 Identities=21% Similarity=0.266 Sum_probs=39.1
Q ss_pred ccccEEEec--cCCCCCc---ccchHHHHHHHHHHHHHhhhC----CCC---CCHHHHHHHHHHHHHHHHhhhh
Q 012570 74 YQPHIVSMG--PYHHGKD---HLKVIQEHKWRYLRSLLFRIK----PCG---VDLKDLFAAIASMEDKIRECYS 135 (460)
Q Consensus 74 Y~P~~VSIG--PyHhg~~---~L~~ME~~K~~~l~~~l~r~~----~~~---~~l~~~~~~i~~~e~~~R~cY~ 135 (460)
--|+++||| ||..++. ++..++..|.-+-.+-++-.- +.. .++++++.+|..-.+.|+..-+
T Consensus 65 v~kMvmSIGwNP~Y~N~~Kt~E~hlih~f~~DFYge~l~~~IvGyiRpe~nf~slesLi~~I~~Di~vA~~~l~ 138 (153)
T KOG3110|consen 65 VFKMVMSIGWNPYYKNKKKTMELHLIHDFGEDFYGETLKVIIVGYIRPELNFDSLESLIEAIHGDIEVAKKVLD 138 (153)
T ss_pred ceeEEEEcccCcccCCcccceeeeeehhcccchhhheeeEEEEEeeccccCcchHHHHHHHHHhhHHHHHHhhc
Confidence 458999999 8887753 333444445544444443210 112 4689999999988888887554
No 19
>PF15103 G0-G1_switch_2: G0/G1 switch protein 2
Probab=26.13 E-value=64 Score=27.34 Aligned_cols=27 Identities=7% Similarity=0.247 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccC
Q 012570 429 FLSAMAALILLFLTMIQAFFAGYGYIR 455 (460)
Q Consensus 429 ~is~vaAv~lL~lTi~Qtv~sv~~~~~ 455 (460)
.++.+.|++..++.+++|+|+-++.-.
T Consensus 28 vLGSvLA~~Gvv~GLVEtVCsPFs~~~ 54 (102)
T PF15103_consen 28 VLGSVLAFFGVVIGLVETVCSPFSAAS 54 (102)
T ss_pred hhhhHHHHHHHHHHHHHHHhCccccCC
Confidence 677888999999999999998776543
No 20
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=25.90 E-value=74 Score=26.13 Aligned_cols=20 Identities=20% Similarity=0.627 Sum_probs=13.8
Q ss_pred cChHHHHHHHHHHHHHHHHHH
Q 012570 424 DSPWSFLSAMAALILLFLTMI 444 (460)
Q Consensus 424 ~nPW~~is~vaAv~lL~lTi~ 444 (460)
.|||+.+++.++ +++++..+
T Consensus 71 e~P~~svgiAag-vG~llG~L 90 (94)
T PF05957_consen 71 ENPWQSVGIAAG-VGFLLGLL 90 (94)
T ss_pred HChHHHHHHHHH-HHHHHHHH
Confidence 489999977666 55555543
No 21
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=24.33 E-value=2.1e+02 Score=21.71 Aligned_cols=58 Identities=26% Similarity=0.371 Sum_probs=30.8
Q ss_pred ChHHHHHHHH-HhccCcccCCCCchHHHHHHHHHhHhcCc-----hhhhhhhhccccccChHHHHHHHHHHH
Q 012570 372 TDEEVARFFN-VVGKDVAFDIHNNYLSELFEGVNEYYRND-----WHVRWAGFKYTYFDSPWSFLSAMAALI 437 (460)
Q Consensus 372 sdeeva~lFn-~L~~~~~~~~~~~y~~~v~~~ln~~~~~r-----w~~w~a~l~~~yf~nPW~~is~vaAv~ 437 (460)
+-++|++.|+ ....|+. =..+-+...+|=.|. -..|...+.+ .|.||+.++=++||++
T Consensus 5 ~~~~v~~~l~t~~~~GLs-------~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~-~f~~~~~~lL~~aail 68 (69)
T PF00690_consen 5 SVEEVLKRLNTSSSQGLS-------SEEVEERRKKYGPNELPEPKKKSLWRIFLK-QFKNPFIILLLIAAIL 68 (69)
T ss_dssp SHHHHHHHHTTBTSSBBT-------HHHHHHHHHHHSSSSTTTTTSSSHHHHHHH-HTTSHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCCCCCCC-------HHHHHHHHHhcccccccccccCcHHHHHHH-HHHhHHHHHHHHHHHH
Confidence 4566777666 4444442 134445555552222 1223333333 5789998876666654
No 22
>PF09820 AAA-ATPase_like: Predicted AAA-ATPase; InterPro: IPR018631 This entry is predicted to be an AAA-ATPase domain []. It is usually found together with IPR012547 from INTERPRO.
Probab=23.87 E-value=1.1e+02 Score=30.66 Aligned_cols=59 Identities=27% Similarity=0.429 Sum_probs=40.0
Q ss_pred CC-ChHHHHHHHHHhccCcccCCCCchHHHHHHHHHhHhcCchhhhhhhhccccccChHHHHHHH
Q 012570 370 FG-TDEEVARFFNVVGKDVAFDIHNNYLSELFEGVNEYYRNDWHVRWAGFKYTYFDSPWSFLSAM 433 (460)
Q Consensus 370 lg-sdeeva~lFn~L~~~~~~~~~~~y~~~v~~~ln~~~~~rw~~w~a~l~~~yf~nPW~~is~v 433 (460)
+| +++||.++|+...+...... . .....++|.++|+.=..-+... ..-..|||.++..+
T Consensus 223 ~GFT~~Ev~~ll~~~~~~~~~~~--~-~~~~~~~lk~wYdGY~F~~~~~--~~~iYNP~Svl~~l 282 (284)
T PF09820_consen 223 FGFTEEEVETLLKYYIENLAEEQ--D-REELLEELKEWYDGYHFGESSE--GERIYNPWSVLNYL 282 (284)
T ss_pred cCcCHHHHHHHHHHHHHHhhhcc--c-hHHHHHHHHHHcCCcccCCCCC--CCCEEChHHHHHHh
Confidence 45 78999999999876665322 3 6778899999998743222211 12345999988765
No 23
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=23.00 E-value=1e+02 Score=23.24 Aligned_cols=21 Identities=14% Similarity=0.502 Sum_probs=17.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHH
Q 012570 425 SPWSFLSAMAALILLFLTMIQ 445 (460)
Q Consensus 425 nPW~~is~vaAv~lL~lTi~Q 445 (460)
+||.+|.++.|+++-=++++.
T Consensus 4 ~~wlIIviVlgvIigNia~LK 24 (55)
T PF11446_consen 4 NPWLIIVIVLGVIIGNIAALK 24 (55)
T ss_pred hhhHHHHHHHHHHHhHHHHHH
Confidence 799999999998877666664
No 24
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=22.77 E-value=85 Score=22.48 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCC
Q 012570 432 AMAALILLFLTMIQAFFAGYGYIRPP 457 (460)
Q Consensus 432 ~vaAv~lL~lTi~Qtv~sv~~~~~~~ 457 (460)
++.++.+.++.+-=|.|++|..+-|+
T Consensus 5 ~~~~i~i~~~lv~~Tgy~iYtaFGpp 30 (43)
T PF02468_consen 5 TVLAIFISCLLVSITGYAIYTAFGPP 30 (43)
T ss_pred eeHHHHHHHHHHHHHhhhhhheeCCC
Confidence 34455555555555678888877554
No 25
>cd00948 FBP_aldolase_I_a Fructose-1,6-bisphosphate aldolase. The enzyme catalyzes the cleavage of fructose 1,6-bisphosphate to glyceraldehyde 3-phosphate and dihydroxyacetone phosphate (DHAP). This family includes proteins found in vertebrates, plants, and bacterial plant pathogens. Mutations in the aldolase genes in humans cause hemolytic anemia and hereditary fructose intolerance. The enzyme is a member of the class I aldolase family, which utilizes covalent catalysis through a Schiff base formed between a lysine residue of the enzyme and ketose substrates.
Probab=22.29 E-value=98 Score=31.73 Aligned_cols=82 Identities=15% Similarity=0.186 Sum_probs=51.6
Q ss_pred HHhhhhcCceeccCCChHHHHHHHHHhccCcccCCCCchHHHHHHHHHhHhcC--chhhhhhhhccccccCh-HHHHHHH
Q 012570 357 AGFLSDHKVIENYFGTDEEVARFFNVVGKDVAFDIHNNYLSELFEGVNEYYRN--DWHVRWAGFKYTYFDSP-WSFLSAM 433 (460)
Q Consensus 357 V~lL~~kGII~n~lgsdeeva~lFn~L~~~~~~~~~~~y~~~v~~~ln~~~~~--rw~~w~a~l~~~yf~nP-W~~is~v 433 (460)
|++|.++|||.. +.=|+-+..+.+. .+-.. -.- ++++.+...+||.- |.-+||+.++-.-= .| ...|--.
T Consensus 82 ~~~L~~~GIvPg-IKVDkGl~~l~g~--~~e~~--t~G-LD~L~~R~~~y~~~GarFAKwRsVi~i~~~-~PS~~~I~~n 154 (330)
T cd00948 82 VDILKEKGIVPG-IKVDKGLVPLAGT--DGETT--TQG-LDGLAERCAKYYKQGARFAKWRAVLKIGNG-TPSELAIKEN 154 (330)
T ss_pred HHHHHHCCCeee-EEeCCCccccCCC--CCCcc--CcC-hHHHHHHHHHHhhcCCcceeeheeeeccCC-CCcHHHHHHH
Confidence 889999999984 4456555555443 11111 234 89999999999864 67899998886431 23 3445555
Q ss_pred HHHHHHHHHHHH
Q 012570 434 AALILLFLTMIQ 445 (460)
Q Consensus 434 aAv~lL~lTi~Q 445 (460)
|..+.=...+.|
T Consensus 155 a~~LaryA~icq 166 (330)
T cd00948 155 AHGLARYAAICQ 166 (330)
T ss_pred HHHHHHHHHHHH
Confidence 555544444444
No 26
>cd00925 Cyt_c_Oxidase_VIa Cytochrome c oxidase subunit VIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIa is expressed in two tissue-specific isoforms in mammals but not fish. VIa-H is the heart and skeletal muscle isoform; VIa-L is the liver or non-muscle isoform. Mammalian VIa-H induces a slip in CcO (decrease in proton/electron stoichiometry) at high intramitochondrial ATP/ADP ratios, while VIa-L induces a permanent slip i
Probab=22.08 E-value=91 Score=25.72 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=22.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH
Q 012570 425 SPWSFLSAMAALILLFLTMIQAFFAG 450 (460)
Q Consensus 425 nPW~~is~vaAv~lL~lTi~Qtv~sv 450 (460)
+-|+-||+++|+-+++++.+.|+..-
T Consensus 14 ~~WkkiS~~va~P~v~l~~~n~y~~~ 39 (86)
T cd00925 14 ELWKKISFYVALPAVALCMLNAYLKH 39 (86)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 46999999999999999999988654
No 27
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=21.15 E-value=1.3e+02 Score=24.59 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=14.6
Q ss_pred ccChHHHHHHHHHHHHHHHHHHH
Q 012570 423 FDSPWSFLSAMAALILLFLTMIQ 445 (460)
Q Consensus 423 f~nPW~~is~vaAv~lL~lTi~Q 445 (460)
|+||-..+|+++|+++++.++..
T Consensus 8 ~kN~~~w~ali~~i~l~vq~~~~ 30 (84)
T PF04531_consen 8 FKNKAFWVALISAILLLVQQVGG 30 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHH
Confidence 56776666777776666555443
No 28
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=20.54 E-value=1.4e+02 Score=23.55 Aligned_cols=24 Identities=17% Similarity=0.499 Sum_probs=18.6
Q ss_pred cccChHHHHHHHHHHHHHHHHHHH
Q 012570 422 YFDSPWSFLSAMAALILLFLTMIQ 445 (460)
Q Consensus 422 yf~nPW~~is~vaAv~lL~lTi~Q 445 (460)
+-+.-|.+|++++++++-++|.+=
T Consensus 28 ~sp~qW~aIGvi~gi~~~~lt~lt 51 (68)
T PF04971_consen 28 FSPSQWAAIGVIGGIFFGLLTYLT 51 (68)
T ss_pred cCcccchhHHHHHHHHHHHHHHHh
Confidence 334569999999999888887653
Done!