Query 012570
Match_columns 460
No_of_seqs 177 out of 666
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 12:01:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012570.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012570hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s8f_C Cytochrome C oxidase po 15.8 1.3E+02 0.0044 19.5 2.9 25 430-454 6-30 (34)
2 1v54_G Cytochrome C oxidase po 14.2 1.1E+02 0.0038 24.0 2.7 24 425-448 14-37 (85)
3 2y69_G Cytochrome C oxidase po 11.2 1.5E+02 0.0051 23.9 2.7 24 425-448 26-49 (97)
4 3ism_C CG4930; endonuclease, e 9.7 2E+02 0.007 28.0 3.5 69 352-420 217-301 (359)
5 2knc_A Integrin alpha-IIB; tra 9.5 4.4E+02 0.015 18.7 4.4 15 424-438 9-25 (54)
6 2l8s_A Integrin alpha-1; trans 9.4 4.3E+02 0.015 18.9 4.3 16 424-439 6-23 (54)
7 2x4i_A CAG38848, uncharacteriz 9.2 3E+02 0.01 22.8 3.9 33 353-386 28-60 (114)
8 2qap_A Fructose-1,6-bisphospha 9.2 47 0.0016 33.4 -1.2 102 338-445 100-208 (391)
9 1awc_A Protein (GA binding pro 9.2 3.2E+02 0.011 22.4 4.0 60 371-435 32-93 (110)
10 2kru_A Light-independent proto 9.1 1.3E+02 0.0044 22.3 1.5 15 194-208 15-29 (63)
No 1
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=15.76 E-value=1.3e+02 Score=19.52 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Q 012570 430 LSAMAALILLFLTMIQAFFAGYGYI 454 (460)
Q Consensus 430 is~vaAv~lL~lTi~Qtv~sv~~~~ 454 (460)
.+++|+++++-+.++=+.+.++..|
T Consensus 6 ~GTl~~V~ilg~~I~i~W~~vf~lF 30 (34)
T 3s8f_C 6 KGALAVILVLTLTILVFWLGVYAVF 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceehHHHHHHHHHHHHHHHHHeee
Confidence 3577778888888888888777554
No 2
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=14.18 E-value=1.1e+02 Score=24.03 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=20.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHH
Q 012570 425 SPWSFLSAMAALILLFLTMIQAFF 448 (460)
Q Consensus 425 nPW~~is~vaAv~lL~lTi~Qtv~ 448 (460)
.-|+-||+++|+=+++++.+.++.
T Consensus 14 ~~Wkkis~~va~P~v~l~~~n~y~ 37 (85)
T 1v54_G 14 RTWRFLTFGLALPSVALCTLNSWL 37 (85)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 459999999999999998888764
No 3
>2y69_G Cytochrome C oxidase polypeptide 6A2; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=11.23 E-value=1.5e+02 Score=23.85 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=20.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHH
Q 012570 425 SPWSFLSAMAALILLFLTMIQAFF 448 (460)
Q Consensus 425 nPW~~is~vaAv~lL~lTi~Qtv~ 448 (460)
+-|+-||+++|+=+++++.+.++.
T Consensus 26 ~~WkkiS~~va~P~v~l~~~n~y~ 49 (97)
T 2y69_G 26 RTWRFLTFGLALPSVALCTLNSWL 49 (97)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999989988888764
No 4
>3ism_C CG4930; endonuclease, endonuclease inhibitor complex, metal complex, hydrolase, hydrolase inhibitor-hydrolase complex; 2.20A {Drosophila melanogaster}
Probab=9.70 E-value=2e+02 Score=28.02 Aligned_cols=69 Identities=13% Similarity=0.025 Sum_probs=43.7
Q ss_pred CChhhHHhhhhcCceeccCCChHHHHHHHHHhccCcc-------cCCCC--chHHHHHHHHHhHhc-----Cch--hhhh
Q 012570 352 NTPADAGFLSDHKVIENYFGTDEEVARFFNVVGKDVA-------FDIHN--NYLSELFEGVNEYYR-----NDW--HVRW 415 (460)
Q Consensus 352 ~t~~DV~lL~~kGII~n~lgsdeeva~lFn~L~~~~~-------~~~~~--~y~~~v~~~ln~~~~-----~rw--~~w~ 415 (460)
.-.+|-+.|-++||+.+..-.|+---.-|+++|+.+. ++..+ .-|.++.+-|.+|.. ++| |-|+
T Consensus 217 ~PleDy~~Lmkr~v~t~~iv~d~i~~~~~~ki~~~ar~vIw~LLF~~~~~~e~~eKaa~lLqeyk~da~fygP~~YNeWI 296 (359)
T 3ism_C 217 NPLEEYRTLMKRFVLTKIIVPDSVHQASVKKIAAAAREIIWKLLFDGTPSAEDQNKAAELLQEYKGDAGFYGPDDYNSWI 296 (359)
T ss_dssp --CHHHHHHHHHHC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHCTHHHHHHH
T ss_pred CcHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhccccCCchHhHHH
Confidence 3456778888888888887777655677777777542 33211 238889999998854 344 6788
Q ss_pred hhhcc
Q 012570 416 AGFKY 420 (460)
Q Consensus 416 a~l~~ 420 (460)
..||.
T Consensus 297 vklrd 301 (359)
T 3ism_C 297 FNLRD 301 (359)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77764
No 5
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=9.50 E-value=4.4e+02 Score=18.75 Aligned_cols=15 Identities=27% Similarity=0.742 Sum_probs=6.4
Q ss_pred cCh-HHH-HHHHHHHHH
Q 012570 424 DSP-WSF-LSAMAALIL 438 (460)
Q Consensus 424 ~nP-W~~-is~vaAv~l 438 (460)
..| |.+ +|+++++++
T Consensus 9 ~vp~wiIi~svl~GLll 25 (54)
T 2knc_A 9 AIPIWWVLVGVLGGLLL 25 (54)
T ss_dssp TCCHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHH
Confidence 456 443 344444333
No 6
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=9.36 E-value=4.3e+02 Score=18.87 Aligned_cols=16 Identities=56% Similarity=1.007 Sum_probs=6.9
Q ss_pred cCh-HHH-HHHHHHHHHH
Q 012570 424 DSP-WSF-LSAMAALILL 439 (460)
Q Consensus 424 ~nP-W~~-is~vaAv~lL 439 (460)
..| |.+ +|+++++++|
T Consensus 6 ~vp~WiIi~svl~GLLLL 23 (54)
T 2l8s_A 6 RVPLWVILLSAFAGLLLL 23 (54)
T ss_dssp CCCTHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHH
Confidence 345 443 3444444433
No 7
>2x4i_A CAG38848, uncharacterized protein 114; unknown function, DUF1874, archeal virus; 2.20A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=9.24 E-value=3e+02 Score=22.78 Aligned_cols=33 Identities=15% Similarity=0.114 Sum_probs=25.6
Q ss_pred ChhhHHhhhhcCceeccCCChHHHHHHHHHhccC
Q 012570 353 TPADAGFLSDHKVIENYFGTDEEVARFFNVVGKD 386 (460)
Q Consensus 353 t~~DV~lL~~kGII~n~lgsdeeva~lFn~L~~~ 386 (460)
+.++++.+..++-+++..| .+..|++.++||.-
T Consensus 28 s~~EAk~~v~~~~~iSaIG-H~sTA~lls~Llg~ 60 (114)
T 2x4i_A 28 DRLEFCENIDNEDIINSIG-HDSTIQLINSLCGT 60 (114)
T ss_dssp CHHHHHHHHCCTTEEECCC-CHHHHHHHHHHHCC
T ss_pred CHHHHHHHhcccCeEEeec-cHHHHHHHHHHhCC
Confidence 3567777776777778887 67999999999873
No 8
>2qap_A Fructose-1,6-bisphosphate aldolase; beta barrel, fructose-1,6-bisphosphate teminal tail, lyase; 1.59A {Leishmania mexicana} SCOP: c.1.10.1 PDB: 2qdg_A* 2qdh_A* 1epx_A 1f2j_A
Probab=9.18 E-value=47 Score=33.38 Aligned_cols=102 Identities=12% Similarity=0.118 Sum_probs=56.6
Q ss_pred cchhhHHHHHhhhcCChhh----HHhhhhcCceeccCCChHHHHHHHHHhccCcccCCCCchHHHHHHHHHhHhcC--ch
Q 012570 338 KHITTYATLMGCLINTPAD----AGFLSDHKVIENYFGTDEEVARFFNVVGKDVAFDIHNNYLSELFEGVNEYYRN--DW 411 (460)
Q Consensus 338 ~~vtsYv~fM~~LI~t~~D----V~lL~~kGII~n~lgsdeeva~lFn~L~~~~~~~~~~~y~~~v~~~ln~~~~~--rw 411 (460)
.+|.-=+.|=.-|-.+..| |++|.++|||.. +.=|+-+..+.++--..-. ..- ++++.+...+|+.- |+
T Consensus 100 ~~IsGvILFeETl~Qk~~dG~pf~~~L~~kGIvPG-IKVDkGl~pl~~G~~~e~~---tqG-LDgL~eR~a~y~~~Ga~F 174 (391)
T 2qap_A 100 QYISGVILHDETVGQKASNGQTFPEYLTARGVVPG-IKTDMGLCPLLEGAEGEQM---TEG-LDGYVKRASAYYKKGCRF 174 (391)
T ss_dssp GTEEEEEECHHHHTCBCTTSSBHHHHHHHTTCEEE-EECCCCEEECSSSSTTCEE---ECC-CTTHHHHHHHHHHTTCCE
T ss_pred CceEEEEcchHhccCcCcCCcCHHHHHHHCCCeeE-EEecCCcccccCCCCCCcc---CCC-hhHHHHHHHHHHhcCCcc
Confidence 3444444444445554666 999999999985 3334333333321111111 123 77788888899864 67
Q ss_pred hhhhhhhccc-cccChHHHHHHHHHHHHHHHHHHH
Q 012570 412 HVRWAGFKYT-YFDSPWSFLSAMAALILLFLTMIQ 445 (460)
Q Consensus 412 ~~w~a~l~~~-yf~nPW~~is~vaAv~lL~lTi~Q 445 (460)
-+||+.++-. ...|+- .|.-.|.++.=...+.|
T Consensus 175 AKWRsViki~~~~PS~~-aI~~na~~LArYA~icQ 208 (391)
T 2qap_A 175 CKWRNVYKIQNGTVSES-AVRFNAETLARYAILSQ 208 (391)
T ss_dssp EEEEEEECCBTTBCCHH-HHHHHHHHHHHHHHHHH
T ss_pred eeeeeEEeccCCCCCHH-HHHHHHHHHHHHHHHHH
Confidence 8999988763 444543 34444444443444444
No 9
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21
Probab=9.16 E-value=3.2e+02 Score=22.44 Aligned_cols=60 Identities=22% Similarity=0.253 Sum_probs=40.4
Q ss_pred CChHHHHHHHHHhccCcccCCCCchHHHHHHHHHhHhcCchhhhh--hhhccccccChHHHHHHHHH
Q 012570 371 GTDEEVARFFNVVGKDVAFDIHNNYLSELFEGVNEYYRNDWHVRW--AGFKYTYFDSPWSFLSAMAA 435 (460)
Q Consensus 371 gsdeeva~lFn~L~~~~~~~~~~~y~~~v~~~ln~~~~~rw~~w~--a~l~~~yf~nPW~~is~vaA 435 (460)
-+.++||++|-.- |+ . +.=+ |.++.+.+.-||++..-.-. ..+.-.+..+|+..++.-++
T Consensus 32 ~d~e~VArlWG~r-Kn-k--p~Mn-YeKlSRaLRyYY~k~ii~Kv~GkrlvY~F~~~~~~l~g~~~~ 93 (110)
T 1awc_A 32 NQPELVAQKWGQR-KN-K--PTMN-YEKLSRALRYYYDGDMICKVQGKRFVYKFVCDLKTLIGYSAA 93 (110)
T ss_dssp SSHHHHHHHHHHH-HT-C--TTCC-HHHHHHHHHGGGGSSSEEECTTSTTEEEECSCHHHHTSSCHH
T ss_pred cCHHHHHHHHHHc-cC-C--CCCC-HHHHHHHHHHHHhcCCEeeccCCeeEEecCCCHHHHhCCCHH
Confidence 4678999999855 32 1 1234 99999999999987642211 24555566889887766554
No 10
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=9.11 E-value=1.3e+02 Score=22.28 Aligned_cols=15 Identities=27% Similarity=0.596 Sum_probs=11.2
Q ss_pred cCcchHHHHHHHHHh
Q 012570 194 NQIPYFVLQTLFELT 208 (460)
Q Consensus 194 NQiPffVL~~L~~~~ 208 (460)
++|||||-.++=+-.
T Consensus 15 kkIP~FVR~kvrr~t 29 (63)
T 2kru_A 15 GKVPFFVRKKVRKNT 29 (63)
T ss_dssp TTSCHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHH
Confidence 569999987776543
Done!