Query 012570
Match_columns 460
No_of_seqs 177 out of 666
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 12:01:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012570.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012570hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 20.2 39 0.0029 18.8 2.5 19 439-457 6-24 (27)
2 d1v54g_ f.23.2.1 (G:) Mitochon 19.3 33 0.0024 25.1 2.7 23 426-448 15-37 (84)
3 d1eg3a2 a.39.1.7 (A:210-306) D 16.2 1E+02 0.0076 22.8 5.1 53 96-150 3-77 (97)
4 d1awca_ a.4.5.21 (A:) GA bindi 14.3 1.2E+02 0.0084 23.1 5.0 63 370-437 31-95 (110)
5 d2i4ra1 c.149.1.1 (A:4-79) V-t 11.9 43 0.0032 23.7 1.7 23 60-82 54-76 (76)
6 d1duxc_ a.4.5.21 (C:) Elk-1 {H 11.9 1.6E+02 0.012 21.1 5.0 42 363-411 27-68 (86)
7 d1v8ca2 d.129.5.1 (A:88-165) M 11.3 42 0.003 23.3 1.3 11 306-316 49-59 (78)
8 d1xmec1 f.23.9.1 (C:2-34) Bact 10.3 1.3E+02 0.0095 17.3 3.1 19 435-453 10-28 (33)
9 d1k94a_ a.39.1.8 (A:) Grancalc 9.8 1.5E+02 0.011 23.2 4.8 38 114-151 87-132 (165)
10 d1f16a_ f.1.4.1 (A:) Proapopto 9.5 1.8E+02 0.013 23.8 5.3 61 374-435 108-178 (192)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=20.24 E-value=39 Score=18.82 Aligned_cols=19 Identities=32% Similarity=0.614 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHhcccCCC
Q 012570 439 LFLTMIQAFFAGYGYIRPP 457 (460)
Q Consensus 439 L~lTi~Qtv~sv~~~~~~~ 457 (460)
.+.|+...+|+.++-|+++
T Consensus 6 i~~tl~glf~aayqqykrp 24 (27)
T d2e74g1 6 VFATLGGLFYAAYQQYKRP 24 (27)
T ss_dssp HHHHHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHHHHHHHHhcCC
Confidence 4567777788888877665
No 2
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=19.33 E-value=33 Score=25.15 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 012570 426 PWSFLSAMAALILLFLTMIQAFF 448 (460)
Q Consensus 426 PW~~is~vaAv~lL~lTi~Qtv~ 448 (460)
-|+.||+++|+-.++++.+.++.
T Consensus 15 lWkkis~~va~P~i~l~~~n~~~ 37 (84)
T d1v54g_ 15 TWRFLTFGLALPSVALCTLNSWL 37 (84)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 59999999999999998888753
No 3
>d1eg3a2 a.39.1.7 (A:210-306) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.21 E-value=1e+02 Score=22.81 Aligned_cols=53 Identities=25% Similarity=0.396 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhhhCCCCC----CHHHHHHHHH---------------HHHHHHHhhhhc---ccCCChHHHHHHHH
Q 012570 96 EHKWRYLRSLLFRIKPCGV----DLKDLFAAIA---------------SMEDKIRECYSE---TIEFSSRELVEMMV 150 (460)
Q Consensus 96 ~~K~~~l~~~l~r~~~~~~----~l~~~~~~i~---------------~~e~~~R~cY~e---~~~~~~~eF~~Mml 150 (460)
+.|.||+-..+... .|. .++.|+..+- .+|..+|+|+.. .-.++.++|+.-|.
T Consensus 3 ~dKyRYlF~qisd~--~g~~~~~kl~~lL~d~lqlP~~vgE~~sFG~s~ie~sv~sCF~~~~~~~~i~~~~FL~wl~ 77 (97)
T d1eg3a2 3 EDKYRYLFKQVASS--TGFCDQRRLGLLLHDSIQIPRQLGEVASFGGSNIEPSVRSCFQFANNKPEIEAALFLDWMR 77 (97)
T ss_dssp HHHHHHHHHHHSCT--TSCBCHHHHHHHHHHHHHHHHHTTCGGGGTCSCCHHHHHHHHHHTTTCSCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC--CCCCcHHHHHHHHHHHHHHHHHhCcccccCCCcchHHHHHHHhccCCCCcccHHHHHHHHH
Confidence 35999999999764 332 3555554432 247888888853 23366777765544
No 4
>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.25 E-value=1.2e+02 Score=23.11 Aligned_cols=63 Identities=21% Similarity=0.245 Sum_probs=42.8
Q ss_pred CCChHHHHHHHHHhccCcccCCCCchHHHHHHHHHhHhcCchhhhh--hhhccccccChHHHHHHHHHHH
Q 012570 370 FGTDEEVARFFNVVGKDVAFDIHNNYLSELFEGVNEYYRNDWHVRW--AGFKYTYFDSPWSFLSAMAALI 437 (460)
Q Consensus 370 lgsdeeva~lFn~L~~~~~~~~~~~y~~~v~~~ln~~~~~rw~~w~--a~l~~~yf~nPW~~is~vaAv~ 437 (460)
+-+.++||++|-.- |+- +.-+ |.++...|.-||++..-.-. ..|.-.+..+||..++.-++-+
T Consensus 31 l~d~e~VA~lWG~~-Knk---~~M~-YeklSRaLRyYY~~~il~Kv~g~rl~Y~F~~d~~~~~~~~~~~l 95 (110)
T d1awca_ 31 LNQPELVAQKWGQR-KNK---PTMN-YEKLSRALRYYYDGDMICKVQGKRFVYKFVCDLKTLIGYSAAEL 95 (110)
T ss_dssp CSSHHHHHHHHHHH-HTC---TTCC-HHHHHHHHHGGGGSSSEEECTTSTTEEEECSCHHHHTSSCHHHH
T ss_pred eCCHHHHHHHHHHh-hCC---Cccc-HHHHHHHHHHHHhcccEEecCCcEEEEeccCCHHHHhCCCHHHH
Confidence 34678999999643 332 1234 99999999999988643222 2455566789999876655543
No 5
>d2i4ra1 c.149.1.1 (A:4-79) V-type ATP synthase subunit F, AtpF {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=11.88 E-value=43 Score=23.68 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=19.6
Q ss_pred eecCchhhccCcCCccccEEEec
Q 012570 60 FRVPESLVEINEKAYQPHIVSMG 82 (460)
Q Consensus 60 ~rVP~~lr~~n~~aY~P~~VSIG 82 (460)
-++|+.+++.-.+.-.|.++.||
T Consensus 54 ~~i~~~i~~~~~~~~~P~Vi~Ig 76 (76)
T d2i4ra1 54 KKLPPVLRREIDEKVEPTFVSVG 76 (76)
T ss_dssp TTSCHHHHTTTTTCCSSEEEEEC
T ss_pred HHhhHHHHHHHhcCCCCEEEecC
Confidence 46788888877888899999998
No 6
>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.86 E-value=1.6e+02 Score=21.15 Aligned_cols=42 Identities=24% Similarity=0.361 Sum_probs=29.1
Q ss_pred cCceeccCCChHHHHHHHHHhccCcccCCCCchHHHHHHHHHhHhcCch
Q 012570 363 HKVIENYFGTDEEVARFFNVVGKDVAFDIHNNYLSELFEGVNEYYRNDW 411 (460)
Q Consensus 363 kGII~n~lgsdeeva~lFn~L~~~~~~~~~~~y~~~v~~~ln~~~~~rw 411 (460)
+|+.. +-+.++||+++-.- |+- +.=+ |.++.+.|..||++..
T Consensus 27 ~g~Fk--lv~~~~VA~lWG~~-Knk---~~Mn-YeklSRaLRyyY~~~i 68 (86)
T d1duxc_ 27 GGEFK--LVDAEEVARLWGLR-KNK---TNMN-YDKLSRALRYYYDKNI 68 (86)
T ss_dssp TTEEE--CTTHHHHHHHHHHT-TTC---SCCC-HHHHHHHHHHHHTTTS
T ss_pred CCEEE--ecCHHHHHHHHHhc-cCC---CCCC-HHHHHHHHHHHHhccc
Confidence 44443 33678999999644 331 1234 9999999999998754
No 7
>d1v8ca2 d.129.5.1 (A:88-165) MoaD-related protein, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=11.30 E-value=42 Score=23.25 Aligned_cols=11 Identities=36% Similarity=0.878 Sum_probs=10.0
Q ss_pred ceeecceEEec
Q 012570 306 GVLEIPTFTID 316 (460)
Q Consensus 306 G~L~IP~L~id 316 (460)
|.|+||+|.+.
T Consensus 49 gsl~ip~lrve 59 (78)
T d1v8ca2 49 GSLSIPQLRVE 59 (78)
T ss_dssp TTEEEEEEEEE
T ss_pred cceecceEEEE
Confidence 88999999886
No 8
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=10.32 E-value=1.3e+02 Score=17.30 Aligned_cols=19 Identities=21% Similarity=0.480 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 012570 435 ALILLFLTMIQAFFAGYGY 453 (460)
Q Consensus 435 Av~lL~lTi~Qtv~sv~~~ 453 (460)
-+.+|.+|++-.++.|+..
T Consensus 10 vi~il~l~ilvfw~gv~av 28 (33)
T d1xmec1 10 VILVLTLTILVFWLGVYAV 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555543
No 9
>d1k94a_ a.39.1.8 (A:) Grancalcin {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.77 E-value=1.5e+02 Score=23.24 Aligned_cols=38 Identities=26% Similarity=0.211 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHH--------HHHHHhhhhcccCCChHHHHHHHHH
Q 012570 114 VDLKDLFAAIASM--------EDKIRECYSETIEFSSRELVEMMVL 151 (460)
Q Consensus 114 ~~l~~~~~~i~~~--------e~~~R~cY~e~~~~~~~eF~~Mmll 151 (460)
.+.+++..++... -+.+-..|+.+-.++=++|+..|+.
T Consensus 87 I~~~El~~~l~~~G~~l~~~~~~~l~~~~d~~g~i~~~eFi~~~~~ 132 (165)
T d1k94a_ 87 VEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNGRIFFDDYVACCVK 132 (165)
T ss_dssp CCHHHHHHHHHHTTCCCCHHHHHHHHHHHCBTTBCBHHHHHHHHHH
T ss_pred EcHHHHHHHHHHhhhcCCHHHHHHHHHHcCCCCcCcHHHHHHHHHH
Confidence 5777777777542 2334445665555788899886654
No 10
>d1f16a_ f.1.4.1 (A:) Proapoptotic molecule Bax {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.51 E-value=1.8e+02 Score=23.83 Aligned_cols=61 Identities=15% Similarity=0.302 Sum_probs=29.8
Q ss_pred HHHHHHHH---HhccCcccCCCCchHHHHHHHHHhHhcCchhhhhh------hhccccccCh-HHHHHHHHH
Q 012570 374 EEVARFFN---VVGKDVAFDIHNNYLSELFEGVNEYYRNDWHVRWA------GFKYTYFDSP-WSFLSAMAA 435 (460)
Q Consensus 374 eeva~lFn---~L~~~~~~~~~~~y~~~v~~~ln~~~~~rw~~w~a------~l~~~yf~nP-W~~is~vaA 435 (460)
.-|+.||. .|+..+.-...+.+...+++-+-+|-..+...|.. .+ .+||.+| |..+++.+|
T Consensus 108 GRIVal~~F~~~La~~~~~~~~~~~v~~i~~~~~~fl~~~l~~WI~~~GGW~g~-~~~f~~~~w~~~~~~~~ 178 (192)
T d1f16a_ 108 GRVVALFYFASKLVLKALCTKVPELIRTIMGWTLDFLRERLLGWIQDQGGWDGL-LSYFGTPTWQTVTIFVA 178 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTTHHHHHTCSTHHH-HHHCCCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhHHHHHHHCCCHHHH-HHHcCCCchHHHHHHHH
Confidence 34444443 34444332222335666776666665544434432 22 3467655 666555433
Done!