Query 012575
Match_columns 460
No_of_seqs 372 out of 2698
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 12:07:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012575.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012575hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p01_A Two-component response 99.6 3.5E-14 1.2E-18 125.9 15.7 172 125-312 11-182 (184)
2 4glq_A Methyl-accepting chemot 99.5 7.3E-14 2.5E-18 122.5 12.3 155 149-317 2-162 (171)
3 2c2a_A Sensor histidine kinase 99.5 6.8E-14 2.3E-18 131.0 11.6 100 335-434 11-113 (258)
4 2zmf_A CAMP and CAMP-inhibited 99.4 1.3E-12 4.5E-17 115.3 13.9 164 141-318 10-185 (189)
5 3trc_A Phosphoenolpyruvate-pro 99.4 2.3E-12 7.9E-17 111.8 15.2 162 142-317 6-169 (171)
6 3e0y_A Conserved domain protei 99.4 5E-13 1.7E-17 117.1 9.7 168 136-317 7-174 (181)
7 3k2n_A Sigma-54-dependent tran 99.4 1.6E-12 5.5E-17 113.8 12.4 164 141-318 3-175 (177)
8 2e4s_A CAMP and CAMP-inhibited 99.4 1.6E-12 5.5E-17 115.0 12.3 171 136-320 5-187 (189)
9 4ew8_A Sensor protein DIVL; si 99.4 2.5E-12 8.7E-17 120.8 14.2 114 330-443 26-143 (268)
10 3o5y_A Sensor protein; GAF dom 99.3 7.4E-12 2.5E-16 108.9 10.4 156 155-326 2-160 (165)
11 3ci6_A Phosphoenolpyruvate-pro 99.3 3.3E-11 1.1E-15 103.8 13.9 162 140-315 6-169 (171)
12 3oov_A Methyl-accepting chemot 99.3 7.1E-11 2.4E-15 102.0 15.2 158 144-315 2-168 (169)
13 2lb5_A Sensor histidine kinase 99.3 6.4E-12 2.2E-16 113.5 8.4 167 135-315 7-203 (208)
14 1gkz_A [3-methyl-2-oxobutanoat 99.1 1.5E-10 5.3E-15 114.9 11.4 108 339-446 116-230 (388)
15 1mc0_A 3',5'-cyclic nucleotide 99.1 1.2E-09 4.1E-14 107.3 17.5 166 141-320 11-177 (368)
16 2qyb_A Membrane protein, putat 99.1 4E-10 1.4E-14 98.8 12.2 160 144-317 3-166 (181)
17 1ykd_A Adenylate cyclase; GAF 99.1 1.3E-09 4.4E-14 108.4 17.3 170 138-320 193-387 (398)
18 2ool_A Sensor protein; bacteri 99.1 9.6E-10 3.3E-14 105.6 14.9 171 141-315 144-333 (337)
19 3nhq_A Bacteriophytochrome; ph 99.1 1.9E-09 6.6E-14 108.9 16.9 173 141-317 122-313 (505)
20 3jz3_A Sensor protein QSEC; he 99.1 1.4E-11 4.9E-16 112.0 1.0 99 345-443 3-105 (222)
21 2vjw_A GAF-B, GAF family prote 99.1 1.7E-09 5.8E-14 92.2 13.3 135 158-317 1-142 (149)
22 1mc0_A 3',5'-cyclic nucleotide 99.1 5E-09 1.7E-13 102.8 18.2 166 138-318 175-346 (368)
23 3ibj_A CGMP-dependent 3',5'-cy 99.1 3.3E-09 1.1E-13 113.3 17.8 172 140-326 177-354 (691)
24 3zq5_A Phytochrome-like protei 99.0 2.6E-09 9E-14 108.2 15.8 171 143-317 137-326 (520)
25 4e04_A Bacteriophytochrome (li 99.0 9.9E-10 3.4E-14 104.4 11.8 164 143-310 133-315 (327)
26 3s7o_A Bacteriophytochrome; bi 99.0 8.7E-10 3E-14 105.1 10.5 169 141-313 149-336 (343)
27 2w3g_A DOSS, two component sen 99.0 1.6E-09 5.5E-14 91.6 10.7 146 155-316 3-152 (153)
28 3mmh_A FRMSR, methionine-R-sul 99.0 1.7E-08 6E-13 87.3 17.1 147 142-308 15-161 (167)
29 3hcy_A Putative two-component 99.0 6.1E-10 2.1E-14 94.6 7.6 144 156-315 1-145 (151)
30 4fpp_A Phosphotransferase; fou 99.0 2.1E-09 7.1E-14 99.8 11.5 77 347-428 49-125 (247)
31 3a0r_A Sensor protein; four he 99.0 1.5E-09 5.2E-14 105.6 10.5 98 342-442 130-231 (349)
32 3dba_A CONE CGMP-specific 3',5 99.0 1.5E-09 5.1E-14 95.7 9.4 154 141-308 4-172 (180)
33 3d36_A Sporulation kinase B; G 99.0 7.8E-10 2.7E-14 101.9 7.7 99 342-444 12-112 (244)
34 1ykd_A Adenylate cyclase; GAF 99.0 5.4E-08 1.9E-12 96.6 20.9 166 141-320 6-195 (398)
35 3ibj_A CGMP-dependent 3',5'-cy 98.9 5.6E-09 1.9E-13 111.5 14.5 165 141-320 12-177 (691)
36 3cit_A Sensor histidine kinase 98.9 3.5E-08 1.2E-12 83.3 15.6 147 138-320 9-158 (160)
37 2k2n_A Sensor protein, SYB-CPH 98.9 1.2E-08 4.3E-13 88.8 11.2 141 159-313 1-171 (172)
38 2btz_A Pyruvate dehydrogenase 98.9 3.8E-09 1.3E-13 105.1 8.6 95 346-442 97-213 (394)
39 3zcc_A HAMP, osmolarity sensor 98.8 2E-08 6.9E-13 80.6 10.3 68 331-403 47-114 (114)
40 1vhm_A Protein YEBR; structura 98.8 1.4E-07 4.9E-12 83.6 15.8 152 140-313 25-177 (195)
41 2q8g_A [pyruvate dehydrogenase 98.8 1.9E-08 6.7E-13 100.3 10.7 87 345-434 107-211 (407)
42 2e0a_A Pyruvate dehydrogenase 98.8 3.2E-08 1.1E-12 98.3 11.3 94 346-442 97-212 (394)
43 4eho_A Bacteriophytochrome, PA 98.7 1.2E-07 4.2E-12 99.9 12.4 170 145-318 133-321 (635)
44 3eea_A GAF domain/HD domain pr 98.6 2.6E-07 8.8E-12 74.0 10.4 149 152-315 7-162 (162)
45 1y8o_A [pyruvate dehydrogenase 98.6 2.1E-07 7.3E-12 93.1 10.7 97 343-442 117-235 (419)
46 3rfb_A Putative uncharacterize 98.6 1.8E-06 6.1E-11 74.5 14.9 143 143-307 17-160 (171)
47 1f5m_A GAF; CGMP binding, sign 98.5 2.6E-06 8.9E-11 74.7 16.1 145 144-307 27-177 (180)
48 3ksh_A Putative uncharacterize 98.5 2.5E-06 8.4E-11 72.9 14.0 141 145-307 18-159 (160)
49 3bjc_A CGMP-specific 3',5'-cyc 98.4 2.5E-08 8.6E-13 109.1 0.0 172 138-322 147-332 (878)
50 3zrx_A AF1503 protein, osmolar 98.4 1.3E-06 4.5E-11 69.7 9.4 64 336-404 52-115 (115)
51 3bjc_A CGMP-specific 3',5'-cyc 98.3 5.3E-08 1.8E-12 106.6 0.0 170 140-322 330-521 (878)
52 3ehh_A Sensor kinase (YOCF pro 97.9 9.2E-05 3.2E-09 66.4 11.3 90 342-443 26-117 (218)
53 1b3q_A Protein (chemotaxis pro 97.4 0.00016 5.4E-09 71.1 6.4 84 342-444 8-94 (379)
54 3e98_A GAF domain of unknown f 96.0 0.14 4.9E-06 46.7 14.1 162 122-309 77-243 (252)
55 4eu0_A PELD; C-DI-GMP, signali 94.9 0.26 8.9E-06 46.0 11.9 132 160-314 25-157 (298)
56 4a2l_A BT_4663, two-component 93.0 0.056 1.9E-06 58.1 4.0 76 218-295 694-776 (795)
57 3ott_A Two-component system se 92.8 0.042 1.4E-06 58.7 2.7 75 219-295 660-742 (758)
58 3v9f_A Two-component system se 91.5 0.083 2.8E-06 56.6 3.0 71 221-293 690-768 (781)
59 3nhq_A Bacteriophytochrome; ph 78.4 2.5 8.7E-05 42.4 5.7 50 136-185 312-361 (505)
60 1ixm_A SPO0B, protein (sporula 67.5 9.8 0.00033 32.8 6.1 46 345-394 22-67 (192)
61 3rlb_A THIT; S-component, ECF 63.5 71 0.0024 27.3 10.9 92 19-114 88-188 (192)
62 3szt_A QCSR, quorum-sensing co 60.7 53 0.0018 28.9 9.9 81 148-229 7-93 (237)
63 2lq0_A De novo designed antifr 56.2 8.6 0.0003 20.2 2.1 15 56-70 7-21 (26)
64 3zq5_A Phytochrome-like protei 50.0 39 0.0013 33.9 7.8 48 138-185 327-374 (520)
65 1vf5_A Cytochrome B6; photosyn 45.8 47 0.0016 29.0 6.6 85 18-102 44-135 (215)
66 2qjy_A Cytochrome B; cytochrom 40.3 80 0.0028 30.9 8.0 87 19-105 56-149 (445)
67 3cx5_C Cytochrome B-C1 complex 39.4 1E+02 0.0036 29.4 8.5 88 19-106 41-135 (385)
68 3ehh_A Sensor kinase (YOCF pro 39.4 35 0.0012 29.1 5.0 27 340-366 28-54 (218)
69 1pp9_C Cytochrome B; cytochrom 38.5 82 0.0028 30.1 7.6 87 19-105 42-133 (379)
70 2w1r_A Spovt, stage V sporulat 30.9 1.8E+02 0.0061 22.5 7.4 114 164-304 5-118 (123)
71 3ra3_B P2F; coiled coil domain 29.5 55 0.0019 17.5 2.7 16 122-137 5-20 (28)
72 3l39_A Putative PHOU-like phos 26.4 3.2E+02 0.011 23.7 13.4 113 287-402 20-153 (227)
73 4hkr_A Calcium release-activat 26.0 3.1E+02 0.011 23.5 11.8 33 75-107 138-170 (214)
74 3nmd_A CGMP dependent protein 25.0 1.5E+02 0.005 20.9 5.0 35 121-155 27-61 (72)
75 3qp6_A CVIR transcriptional re 24.5 2.2E+02 0.0075 25.3 7.8 38 145-183 23-60 (265)
76 3ghg_A Fibrinogen alpha chain; 24.4 5.3E+02 0.018 25.6 12.7 47 319-365 58-104 (562)
77 1ysr_A Sensor-type histidine k 20.8 70 0.0024 25.2 3.3 30 413-442 4-34 (150)
No 1
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=99.58 E-value=3.5e-14 Score=125.94 Aligned_cols=172 Identities=15% Similarity=0.136 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhhhcCCceeEEeccCCCCCceEEEEeecCCccCC
Q 012575 125 RADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIG 204 (460)
Q Consensus 125 ~~~~l~~e~~~l~~~~e~~~~l~~lt~~I~~sld~~~il~~~~~~l~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 204 (460)
...++++..+++++++++.+.++++++.+++++|++++++.+++.+.+.+++|+|.+|+.+++. .......+..+....
T Consensus 11 ~~~~l~~~~~~l~~~~~~~~~L~~is~~l~~~~dl~~il~~i~~~l~~~l~~d~~~i~l~~~~~-~~~~~~~~~~~~~~~ 89 (184)
T 3p01_A 11 TYDLLKQRTEELRRANAQMSLLTVLVQVTQASNSLEAILTPIATAFAESFAVNACILQMLEGQT-LSTIQGFYSQQGTVN 89 (184)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHTCSEEEEEEEETTE-EEEEEEEEESSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCc-eeeeeeeccccCccC
Confidence 4567777778888899999999999999999999999999999999999999999999995443 222223233222122
Q ss_pred cccccCChhHHHHhhccCceeecCCCchhhhhhcccCCCCCcceEEEeeccccCCccccCCCcccCCceeEEEEEeeCCC
Q 012575 205 SSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDG 284 (460)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~g~~~~~v~~~~~~~ 284 (460)
..++ ..+.+..++.+++++.+++...+..+.........+..+.+.+||.. ++..+|++.+.+..
T Consensus 90 ~~~~-~~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~s~l~vPL~~--------------~~~~~GvL~l~~~~ 154 (184)
T 3p01_A 90 NWLN-QDPLTNEAIATGQIQVAANIAKDPKLASISQYQDNGIQSHVVIPITY--------------RNEMLGVLSLQWQQ 154 (184)
T ss_dssp CCGG-GCHHHHHHHHHCSCEEESCGGGCHHHHTCHHHHHHTCCEEEEEEEEE--------------TTEEEEEEEEEESS
T ss_pred cccC-CCcHHHHHHhhCCeEEEeccccCccccchhHHHHhCccEEEEEEEEE--------------CCEEEEEEEeCcCC
Confidence 2244 47888999999999998877665544311000012446677778643 34458888888788
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHH
Q 012575 285 GRKWRDHELELIDVVADQVAVALSHAAI 312 (460)
Q Consensus 285 ~~~~~~~e~~ll~~ia~~~a~ai~~a~l 312 (460)
++.|+++|.+++..+|+|+|+||+|++.
T Consensus 155 ~~~f~~~d~~ll~~lA~q~aiAi~nAr~ 182 (184)
T 3p01_A 155 PISLREDELTLIHLSAQLVAIALTSSRC 182 (184)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999864
No 2
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=99.52 E-value=7.3e-14 Score=122.46 Aligned_cols=155 Identities=10% Similarity=0.129 Sum_probs=100.8
Q ss_pred HHHHHHhcccHHHHHHHHHHHhhhhcCCceeEEeccCCCCCceEEEEeecCCccCCcccccCChh----HHHHhhccCce
Q 012575 149 LTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPI----VTDVFNSAQAM 224 (460)
Q Consensus 149 lt~~I~~sld~~~il~~~~~~l~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 224 (460)
.+..|++++|+++|++++++++++.+++|||.||.+++++......+...++.+.........+. ....+.+++.+
T Consensus 2 ~a~~Ir~sldl~~il~~~v~~v~~~l~~DRv~Iy~f~~d~~g~vvaE~~~~~~~s~lg~~~~~~~~~~~~~~~~~~g~~~ 81 (171)
T 4glq_A 2 AAVQLSELRDRQAIFETLVAKGRELLACDRVIVYAFDDNYVGTVVAESVAEGWPQARDQVIEDPCFREHWVEAYRQGRIQ 81 (171)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHTCSEEEEEEECTTCCEEEEEEEECTTSCCCTTCEECCTHHHHHTHHHHHTTCCE
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHCCCeEEEEEEeCCCCeEEEEEEcCCCCccccCCccCccccHHHHHHHHHcCCEE
Confidence 45789999999999999999999999999999999999987766666666554332222222222 34567778888
Q ss_pred eecCCCchhhhhhcccC--CCCCcceEEEeeccccCCccccCCCcccCCceeEEEEEeeCCCCCcccccHHHHHHHHHHH
Q 012575 225 RLPYNCPLARIRLLVGR--YVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQ 302 (460)
Q Consensus 225 ~l~~~~~~~~~~~~~~~--~~~~~~~~~~~pl~~~~~~~~~~~~~l~~g~~~~~v~~~~~~~~~~~~~~e~~ll~~ia~~ 302 (460)
.+++..... ....... -..+-++.+.+|+. ..|..++.+.+.++..+|.|+++|++++..+|+|
T Consensus 82 ~I~Dv~~~~-~~~~~~~~l~~~~v~S~L~vPi~-------------~~~~l~GlL~~~~~~~~r~w~~~ei~ll~~lA~q 147 (171)
T 4glq_A 82 ATTDIFKAG-LTECHLNQLRPLKVRANLVVPMV-------------IDDQLFGLLIAHQASEPRQWQEIEIDQFSELAST 147 (171)
T ss_dssp EESCGGGTT-CCHHHHHHHGGGTEEEEEEEEEE-------------ETTEEEEEEEEEEESSCCCCCHHHHHHHHHHHHH
T ss_pred EEcCcCcCC-CCHHHHHHHHhcCCcEEEEEEEE-------------ECCEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 887654321 1100001 11234566666653 3444445555556688999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 012575 303 VAVALSHAAILEDSM 317 (460)
Q Consensus 303 ~a~ai~~a~l~~~~~ 317 (460)
+++||.++++|++.+
T Consensus 148 l~iAi~qa~l~~~~~ 162 (171)
T 4glq_A 148 GSLVLERLHFLEQTI 162 (171)
T ss_dssp HHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999997643
No 3
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=99.51 E-value=6.8e-14 Score=131.02 Aligned_cols=100 Identities=23% Similarity=0.357 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcc
Q 012575 335 REAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLET---DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLE 411 (460)
Q Consensus 335 ~~l~~~~~~k~~f~~~iSHELRtPLt~I~g~~~lL~~~---~~~~~~~~~l~~I~~~~~rl~~LI~~LL~~sr~e~g~~~ 411 (460)
+++++.++.+.+|++++||||||||++|.|+++++.+. ...++.+++++.|.+++++|.++|+++++++|++.+...
T Consensus 11 ~~l~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~ 90 (258)
T 2c2a_A 11 ERLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQ 90 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcc
Confidence 44566678889999999999999999999999999753 233456789999999999999999999999999999989
Q ss_pred cccccccHHHHHHHHHHHHhhhc
Q 012575 412 LDNGPFNLQIVLREVIIFSSVLQ 434 (460)
Q Consensus 412 l~~~~~~L~~li~~v~~~~~~~a 434 (460)
++.+++|+.+++++++..+.+.+
T Consensus 91 ~~~~~~~l~~~~~~~~~~~~~~~ 113 (258)
T 2c2a_A 91 INREKVDLCDLVESAVNAIKEFA 113 (258)
T ss_dssp CCCEEEEHHHHHHHHHHHHHHHH
T ss_pred CccceecHHHHHHHHHHHHHHHH
Confidence 99999999999999999888775
No 4
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}
Probab=99.43 E-value=1.3e-12 Score=115.34 Aligned_cols=164 Identities=12% Similarity=0.104 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHH-HhcccHHHHHHHHHHHhhhhcCCceeEEeccCCCCCceEEEEeecCC---------ccCCcccccC
Q 012575 141 ETGRHVRMLTHEI-RSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ---------IQIGSSVPIN 210 (460)
Q Consensus 141 e~~~~l~~lt~~I-~~sld~~~il~~~~~~l~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 210 (460)
+....|.++++.+ .+++|++++++.+++.+.+.+++|+|.||+.++++..+......... ......+|..
T Consensus 10 e~~~~Ll~~~~~i~~~~~dld~ll~~i~~~~~~~l~ad~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (189)
T 2zmf_A 10 ELNDFLLDVSKTYFDNIVAIDSLLEHIMIYAKNLVNADRCALFQVDHKNKELYSDLFDIGEEKEGKPVFKKTKEIRFSIE 89 (189)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEEEECCSCEETTEECCEECCCCEEETT
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCCEEEEEEEecCCcEEEEEEEecccccccccccccccccccCCC
Confidence 3445577888875 66799999999999999999999999999999998876554332211 1122345667
Q ss_pred ChhHHHHhhccCceeecCCCchhhhhhc-ccCCCCCcceEEEeeccccCCccccCCCcccCCceeEEEEEe-eCCCCCcc
Q 012575 211 LPIVTDVFNSAQAMRLPYNCPLARIRLL-VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLML-PTDGGRKW 288 (460)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~g~~~~~v~~~-~~~~~~~~ 288 (460)
.+....++.+++++.+++...+...... ......+.+..+.+|+.. ++..+|++.+ ++..++.|
T Consensus 90 ~~~~~~v~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vPl~~--------------~~~~~Gvl~l~~~~~~~~f 155 (189)
T 2zmf_A 90 KGIAGQVARTGEVLNIPDAYADPRFNREVDLYTGYTTRNILCMPIVS--------------RGSVIGVVQMVNKISGSAF 155 (189)
T ss_dssp SHHHHHHHHHCCCEEESCGGGSTTCCTHHHHHHCCCCCCEEEEEEEE--------------TTEEEEEEEEEEETTSSSC
T ss_pred ccHHHHHHHhCCeEEEecccccccccccchhhcccccceEEEeeecc--------------cCceeeEEEEEEcCCCCCc
Confidence 7888999999999998876654332211 111122334566677643 2334666654 56667899
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012575 289 RDHELELIDVVADQVAVALSHAAILEDSMR 318 (460)
Q Consensus 289 ~~~e~~ll~~ia~~~a~ai~~a~l~~~~~~ 318 (460)
+++|.++++.+|.|+|+||+|+++|++.++
T Consensus 156 ~~~d~~ll~~lA~q~a~Ai~na~l~~~lr~ 185 (189)
T 2zmf_A 156 SKTDENNFKMFAVFCALALHCANMYHRIRH 185 (189)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987543
No 5
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}
Probab=99.43 E-value=2.3e-12 Score=111.77 Aligned_cols=162 Identities=13% Similarity=0.087 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHhhhhcCCceeEEeccCCCCCceEEEEeecCCc--cCCcccccCChhHHHHhh
Q 012575 142 TGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQI--QIGSSVPINLPIVTDVFN 219 (460)
Q Consensus 142 ~~~~l~~lt~~I~~sld~~~il~~~~~~l~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 219 (460)
..+.+.++++.+.++.|.+++++.+++.+.+.+++++|.||+.++++..+......+... ......+...+....++.
T Consensus 6 ~L~~L~~i~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 85 (171)
T 3trc_A 6 MLKILRQITQEVNAAPNLEQALKLVVVRLCEALPADACSLFICDDVHGEYVLMATQGLNSKQVGKLRLKFGEGLIGLVGE 85 (171)
T ss_dssp HHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHTTCSEEEEEEEETTTTEEEEEEEESSCGGGTTTCEEETTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhCCcEEEEEEEECCCCeEEEEEecCCCccccccEeecCCCChhhHHHh
Confidence 456799999999999999999999999999999999999999999887777666655332 222356677888999999
Q ss_pred ccCceeecCCCchhhhhhcccCCCCCcceEEEeeccccCCccccCCCcccCCceeEEEEEeeCCCCCcccccHHHHHHHH
Q 012575 220 SAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVV 299 (460)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~g~~~~~v~~~~~~~~~~~~~~e~~ll~~i 299 (460)
+++++.+++...+..+.........+....+.+|+.. ++..+|++.+....++.|++++.+++..+
T Consensus 86 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~s~l~vPl~~--------------~~~~~Gvl~~~~~~~~~f~~~d~~~l~~l 151 (171)
T 3trc_A 86 REEPINLADAPLHPAYKHRPELGEEDYHGFLGIPIIE--------------QGELLGILVIQQLESHHFAEEEEAFCVTL 151 (171)
T ss_dssp HTSCEEESCGGGSTTCCCCGGGCCCCCCEEEEEEEEE--------------TTEEEEEEEEEESSSCCCCHHHHHHHHHH
T ss_pred cCCeEEeCCCCCCCcccccccCCcccccEEEEEeEEE--------------CCEEEEEEEEeecCCCCCCHHHHHHHHHH
Confidence 9999999876654443321111234456677777643 34468888888877889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012575 300 ADQVAVALSHAAILEDSM 317 (460)
Q Consensus 300 a~~~a~ai~~a~l~~~~~ 317 (460)
+++++++++|++++++.+
T Consensus 152 a~~~a~ai~~a~l~~~l~ 169 (171)
T 3trc_A 152 AIHLAAEIAHARAKGALE 169 (171)
T ss_dssp HHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999987754
No 6
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}
Probab=99.41 E-value=5e-13 Score=117.09 Aligned_cols=168 Identities=14% Similarity=0.145 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhhhcCCceeEEeccCCCCCceEEEEeecCCccCCcccccCChhHH
Q 012575 136 ILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVT 215 (460)
Q Consensus 136 l~~~~e~~~~l~~lt~~I~~sld~~~il~~~~~~l~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (460)
+++++++...+.++++.+.++.|.+++++.+++.+.+.+++++|.||+.++++..+...............++.+.+...
T Consensus 7 ~~~~~~~l~~l~~i~~~l~~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 86 (181)
T 3e0y_A 7 ANREHLEIISLEEISMLVSSDFDLPEVLQHVTAKVATQLKVSVCNIYLREGDEVVLAATHGFDPAFIGKIRIKIGDGITG 86 (181)
T ss_dssp ----CTTCCCHHHHHHHHSTTSCHHHHHHHHHHHHHHHTTCSCEEEEEEETTEEEEEEEESSCGGGTTTCEEETTTSSHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCCeEEEEEEcCCCceEEEecCCCHHHhccccccCCCCeee
Confidence 34455566779999999999999999999999999999999999999999887743333333333333445666778889
Q ss_pred HHhhccCceeecCCCchhhhhhcccCCCCCcceEEEeeccccCCccccCCCcccCCceeEEEEEeeCCCCCcccccHHHH
Q 012575 216 DVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELEL 295 (460)
Q Consensus 216 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~g~~~~~v~~~~~~~~~~~~~~e~~l 295 (460)
.++.+++++.+++...+..+.........+....+.+||.. ++..+|++.+....++.|++++.++
T Consensus 87 ~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~s~l~vPl~~--------------~~~~iGvl~~~~~~~~~f~~~~~~~ 152 (181)
T 3e0y_A 87 SVARDGQYISLSRASQDPRYRYFPELQEEKYNSMLSFPIGD--------------KKEVYGVINLNTTSIRSFHEDEIYF 152 (181)
T ss_dssp HHHHHCCCEEEEEECCCCCC---------CEEEEEEEEEEC--------------SSCEEEEEEEEESSCCCCCHHHHHH
T ss_pred ehhhcCCeEEecCcccCccccccccccccCcceEEEEEEEe--------------CCeEEEEEEEeeCCCCCCCHHHHHH
Confidence 99999999988766554333211111123446667777643 3445888888877788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012575 296 IDVVADQVAVALSHAAILEDSM 317 (460)
Q Consensus 296 l~~ia~~~a~ai~~a~l~~~~~ 317 (460)
+..++.++++++++++.+++.+
T Consensus 153 l~~la~~~a~al~~~~~~~~~~ 174 (181)
T 3e0y_A 153 VSIIANLILTAIKLRQQVASSR 174 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998887643
No 7
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}
Probab=99.41 E-value=1.6e-12 Score=113.75 Aligned_cols=164 Identities=12% Similarity=0.106 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhhhhcCCceeEEeccCCCCCceEEEE-eecCC---ccCCcccccCChhHHH
Q 012575 141 ETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSY-TLNNQ---IQIGSSVPINLPIVTD 216 (460)
Q Consensus 141 e~~~~l~~lt~~I~~sld~~~il~~~~~~l~~~l~~~~~~i~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~ 216 (460)
...+.+.++++.|.+++|++++++.+++.+.+.+++++|.|++.++++..+.... .+... .......|...+....
T Consensus 3 ~~l~ll~~i~~~l~~~~d~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (177)
T 3k2n_A 3 AALKLMQYIGDAIGTIRDPQELFRTVTDKLRLLFAFDSAVIITIDRERREASVFFEMLRFELPEQLRHQTRSIAGTWLEG 82 (177)
T ss_dssp HHHHHHHHHHHHHTTCCSHHHHHHHHHHHHTTTCCCSEEEEEEEETTTTEEEEEEEECSSCCCSTTCCSEEECTTSGGGG
T ss_pred HHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCeEEeEEecccCCCCchhhcccCCccccHHHH
Confidence 4567899999999999999999999999999999999999999999887765431 11111 1122345566778888
Q ss_pred HhhccCceeecCCCchhhhhhc-----ccCCCCCcceEEEeeccccCCccccCCCcccCCceeEEEEEeeCCCCCccccc
Q 012575 217 VFNSAQAMRLPYNCPLARIRLL-----VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDH 291 (460)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~g~~~~~v~~~~~~~~~~~~~~ 291 (460)
++.+++++.++....+..+... ......+....+.+||. .++..+|++.+....++.|+++
T Consensus 83 v~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vPL~--------------~~~~~iGvL~l~~~~~~~f~~~ 148 (177)
T 3k2n_A 83 HLDDRTVTVASIARDIPSFGADGAPLLWTLHELGMRQIVLSPLR--------------SGGRVIGFLSFVSAEEKLWSDG 148 (177)
T ss_dssp GTTCCSCEEEETTTTCTTTTTTTCHHHHHHHHHTCCEEEEEEEE--------------ETTEEEEEEEEEESSCCCCCHH
T ss_pred HhccCCceEechhhcccccCCcchhHHHHHHHcCceEEEEEEEE--------------ECCEEEEEEEEEECCCCCCCHH
Confidence 9999988887433212221110 00111234566677763 3345689999988888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012575 292 ELELIDVVADQVAVALSHAAILEDSMR 318 (460)
Q Consensus 292 e~~ll~~ia~~~a~ai~~a~l~~~~~~ 318 (460)
+.+++..+|+|+|+|++|+++|++.++
T Consensus 149 d~~ll~~lA~~~a~Ai~na~l~~~l~~ 175 (177)
T 3k2n_A 149 DKSLLSGVSSSIAIAVSNALAYEELRQ 175 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999987653
No 8
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; GAF domain, structural genomics, NPPSFA; HET: MSE CMP; 2.10A {Homo sapiens} PDB: 2zmf_A*
Probab=99.40 E-value=1.6e-12 Score=114.95 Aligned_cols=171 Identities=11% Similarity=0.105 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHhhhhcCCceeEEeccCCCCCceEEEE-eecC--------CccCCc
Q 012575 136 ILTQEETGRHVRMLTHEIRST-LDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSY-TLNN--------QIQIGS 205 (460)
Q Consensus 136 l~~~~e~~~~l~~lt~~I~~s-ld~~~il~~~~~~l~~~l~~~~~~i~~~~~~~~~~~~~~-~~~~--------~~~~~~ 205 (460)
++++.++.+.+.++++.+.++ +|++++++.+++.+.+.+++++|.|++.++++..+.... ..+. ......
T Consensus 5 l~~~~~~~~~L~~~~~~l~~~~~d~~~~l~~i~~~~~~~~~a~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (189)
T 2e4s_A 5 SSGQTELNDFLLDVSKTYFDNIVAIDSLLEHIMIYAKNLVNADRCALFQVDHKNKELYSDLFDIGEEKEGKPVFKKTKEI 84 (189)
T ss_dssp ---CHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEEEEEEEEEETTEEEEEECCCC
T ss_pred hHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhCCCeEEEEEEECCCCEEEEEEeccCccccccccccCCcce
Confidence 345567777899999999888 599999999999999999999999999999876655432 1111 112344
Q ss_pred ccccCChhHHHHhhccCceeecCCCchhhhhhc-ccCCCCCcceEEEeeccccCCccccCCCcccCCceeEEEEEeeCCC
Q 012575 206 SVPINLPIVTDVFNSAQAMRLPYNCPLARIRLL-VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDG 284 (460)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~g~~~~~v~~~~~~~ 284 (460)
.+|.+.+....++.+++++.+++...+..+... ......+....+.+||. .++..+||+.+.+..
T Consensus 85 ~~~~~~~~~~~v~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vPl~--------------~~~~~iGvl~l~~~~ 150 (189)
T 2e4s_A 85 RFSIEKGIAGQVARTGEVLNIPDAYADPRFNREVDLYTGYTTRNILCMPIV--------------SRGSVIGVVQMVNKI 150 (189)
T ss_dssp EEETTSHHHHHHHHHCCCEEESCGGGSTTCCTHHHHHHCCCCCCEEEEEEE--------------ETTEEEEEEEEEEET
T ss_pred EeeCCCcHHHHHHHhCCEEEecCCCcCcccChhhccccCCccceEEEEEec--------------cCCeEEEEEEEEeCC
Confidence 567778899999999999999876654433211 00111233556677764 344568888887765
Q ss_pred CC-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012575 285 GR-KWRDHELELIDVVADQVAVALSHAAILEDSMRAR 320 (460)
Q Consensus 285 ~~-~~~~~e~~ll~~ia~~~a~ai~~a~l~~~~~~~~ 320 (460)
++ .|++++.+++..++.++++||+|++++++.++.+
T Consensus 151 ~~~~f~~~d~~ll~~la~~~a~ai~na~l~~~~~~~~ 187 (189)
T 2e4s_A 151 SGSAFSKTDENNFKMFAVFCALALHCANMYHRIRHSE 187 (189)
T ss_dssp TSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55 9999999999999999999999999998765543
No 9
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=99.40 E-value=2.5e-12 Score=120.81 Aligned_cols=114 Identities=22% Similarity=0.292 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 012575 330 LDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLET-DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDG 408 (460)
Q Consensus 330 L~~~~~~l~~~~~~k~~f~~~iSHELRtPLt~I~g~~~lL~~~-~~~~~~~~~l~~I~~~~~rl~~LI~~LL~~sr~e~g 408 (460)
+++.++++++.++.+.+|++.++|||||||++|.++++++.+. ..+++.+++++.|.++++++..++++++++++.+.+
T Consensus 26 l~~~~~~l~~~~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~ 105 (268)
T 4ew8_A 26 LADRSAALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDDVLDMAQIDAG 105 (268)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4444556666778888999999999999999999999999864 467788999999999999999999999999999999
Q ss_pred CcccccccccHHHHHHHHHHHHhhhc---ccceEeecC
Q 012575 409 SLELDNGPFNLQIVLREVIIFSSVLQ---NFTYRVGTK 443 (460)
Q Consensus 409 ~~~l~~~~~~L~~li~~v~~~~~~~a---~~~~~l~~~ 443 (460)
...+..+++++.+++++++..+...+ ++.+.++.+
T Consensus 106 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~i~~~~~ 143 (268)
T 4ew8_A 106 EMALEIEDIRVSDLLLNAQERALKDAQLGGVTLAVECE 143 (268)
T ss_dssp CCCCCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred CcceeeeeccHHHHHHHHHHHHHhhhhccCceEEEEcC
Confidence 99999999999999999999888775 344444443
No 10
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}
Probab=99.31 E-value=7.4e-12 Score=108.89 Aligned_cols=156 Identities=13% Similarity=0.218 Sum_probs=103.0
Q ss_pred hcccHHHHHHHHHHHhhhhcCCceeEEeccCCCCCceEEEEeecCC---ccCCcccccCChhHHHHhhccCceeecCCCc
Q 012575 155 STLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ---IQIGSSVPINLPIVTDVFNSAQAMRLPYNCP 231 (460)
Q Consensus 155 ~sld~~~il~~~~~~l~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (460)
..++++++++.+.+.+.+.+++|++.+++.+++. +.+....+.. .+.+..+|...+....++.+++++..+....
T Consensus 2 ~~~sldevL~~v~~~l~~~~~~d~~~l~L~~~~~--L~l~a~~~~~~~~~~~~~~ip~~~s~~~~v~~~~~~~v~~~~~~ 79 (165)
T 3o5y_A 2 NAMSLDDIINNMIDKLKLLVHFDRISFLLLANET--LKLSHVYPKGSHSLDIGSTIPKEQSLYWSALDQRQTIFRSLTDT 79 (165)
T ss_dssp --CCHHHHHHHHHHHHHHHSCCSEEEEEEEETTE--EEEEEEESTTCCSSCTTCEECSTTCHHHHHHHHTSCEEEESCCT
T ss_pred CCCCHHHHHHHHHHHHHHhcCcceEEEEEEECCE--EEEEEEecCCccccccccccCCccCHHHHHHHhCCeEEEcCccc
Confidence 3578999999999999999999999999998754 3333333322 1234567777788999999999988654333
Q ss_pred hhhhhhcccCCCCCcceEEEeeccccCCccccCCCcccCCceeEEEEEeeCCCCCcccccHHHHHHHHHHHHHHHHHHHH
Q 012575 232 LARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAA 311 (460)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~g~~~~~v~~~~~~~~~~~~~~e~~ll~~ia~~~a~ai~~a~ 311 (460)
...+.........+.++.+.+||... +..+|++.+.+..++.|++++.++++.+|+|+|++|+||+
T Consensus 80 ~~~~~~~~~~~~~~~~S~l~vPL~~~--------------~~~iGvl~l~~~~~~~f~~~d~~~l~~la~~~aiai~na~ 145 (165)
T 3o5y_A 80 QDNFYEKQYLAILDLKSILVIPIYSK--------------NKRVGVLSIGRKQQIDWSLDDLAFLEQLTDHLAVSIENVE 145 (165)
T ss_dssp TCCCTTHHHHHTTTCCEEEEEEEECS--------------SCEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccchHHHhhCCCEEEEeCeeEC--------------CEEEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 21211111111245577888887543 3358899988888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 012575 312 ILEDSMRARNQLMEQ 326 (460)
Q Consensus 312 l~~~~~~~~~~l~~~ 326 (460)
+|++.++.++++++.
T Consensus 146 ly~~~~~~~~~~~~~ 160 (165)
T 3o5y_A 146 LYGQVLRSKQEWEDT 160 (165)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 999988877776654
No 11
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}
Probab=99.30 E-value=3.3e-11 Score=103.83 Aligned_cols=162 Identities=13% Similarity=0.155 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhhhcCCceeEEeccCCCCCceEEEEeecCCc--cCCcccccCChhHHHH
Q 012575 140 EETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQI--QIGSSVPINLPIVTDV 217 (460)
Q Consensus 140 ~e~~~~l~~lt~~I~~sld~~~il~~~~~~l~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 217 (460)
+++...+.++++.+.++.|.+++++.+++.+.+.+++++|.+|+.++++..+......+... ......+...+....+
T Consensus 6 ~~~l~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 85 (171)
T 3ci6_A 6 NMQLDTLRRIVQEINSSVSLHDSLDIMVNQVADAMKVDVCSIYLLDERNQRYLLMASKGLNPESVGHVSLQLSEGLVGLV 85 (171)
T ss_dssp CHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCSEEEEEEEETTTTEEEEEEEESSCGGGTTTCEEETTSHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCeEEEEEEeCCCCEEEEEeccCCCcccccceeeeccCCeehhh
Confidence 45566799999999999999999999999999999999999999998877777666555432 2233456677888999
Q ss_pred hhccCceeecCCCchhhhhhcccCCCCCcceEEEeeccccCCccccCCCcccCCceeEEEEEeeCCCCCcccccHHHHHH
Q 012575 218 FNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELID 297 (460)
Q Consensus 218 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~g~~~~~v~~~~~~~~~~~~~~e~~ll~ 297 (460)
+.+++++.+++................+....+.+|+. .++..+|++.+....++.|++++.+++.
T Consensus 86 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~s~l~vPl~--------------~~~~~~Gvl~l~~~~~~~f~~~~~~~l~ 151 (171)
T 3ci6_A 86 GQREEIVNLENASKHERFAYLPETGEEIYNSFLGVPVM--------------YRRKVMGVLVVQNKQPQDFSEAAESFLV 151 (171)
T ss_dssp HHHTSCEEESSGGGSTTC---------CCCEEEEEEEE--------------ETTEEEEEEEEEESSCCCCCHHHHHHHH
T ss_pred hccCceEEecCCCcCcchhccccccccccceEEEEeEE--------------ECCEEEEEEEEecCCCCCCCHHHHHHHH
Confidence 99999998876655433221111112233556666653 3445688888887777899999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012575 298 VVADQVAVALSHAAILED 315 (460)
Q Consensus 298 ~ia~~~a~ai~~a~l~~~ 315 (460)
.++++++.++++++++++
T Consensus 152 ~la~~~a~al~~~~l~~~ 169 (171)
T 3ci6_A 152 TLCAQLSGVIAHAHAVGN 169 (171)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999999865
No 12
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=99.28 E-value=7.1e-11 Score=102.02 Aligned_cols=158 Identities=18% Similarity=0.251 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhhhhcCCceeEEeccCCCCCceEEEEeecCCc--cCCccccc--CChhHHHHhh
Q 012575 144 RHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQI--QIGSSVPI--NLPIVTDVFN 219 (460)
Q Consensus 144 ~~l~~lt~~I~~sld~~~il~~~~~~l~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~ 219 (460)
..++++++.+.++.|.+++++.+++.+.+.+++++|.+++.++++..+......++.. .....++. ..+.+..++.
T Consensus 2 ~~L~~i~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (169)
T 3oov_A 2 NAFHQISSRIQKSIDVDEVLRLCAEGLHDVLGYERVNILMADTARTSLSFVAAVGTADFNPAGVVLPLDQRGGVITKCFT 81 (169)
T ss_dssp ----CHHHHHHHCCCHHHHHHHHHHHHHHTTCCSEEEEEEECTTSSEEEEEEEESCSSCCCTTCEEESSGGGHHHHHHHH
T ss_pred chHHHHHHHHhhhcCHHHHHHHHHHHHHHhhCCceEEEEEEeCCCCeEEEEEEeCchhhhhhcccCCcccccchHHHHHh
Confidence 3578899999999999999999999999999999999999999888877776666432 22334454 5678899999
Q ss_pred ccCceeecCCCchhhhhhcc----cCCCCCcceEEEeeccccCCccccCCCcccCCceeEEEEEeeCCCC-CcccccHHH
Q 012575 220 SAQAMRLPYNCPLARIRLLV----GRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGG-RKWRDHELE 294 (460)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~g~~~~~v~~~~~~~~-~~~~~~e~~ 294 (460)
+++++.+.+........... .....+....+.+||. .++..+|++++.+..+ +.|++++.+
T Consensus 82 ~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~--------------~~~~~iGvl~~~~~~~~~~f~~~d~~ 147 (169)
T 3oov_A 82 DRQVYMIDDVSAYPTDFRLQSPYDAIRALRSKSFVICPIV--------------VKGEAIGVFAVDNRSSRRSLNDTDVD 147 (169)
T ss_dssp HTCCEEESCGGGSCGGGSCCTTGGGCGGGCCSSEEEEEEE--------------ETTEEEEEEEEECTTSSSCCCHHHHH
T ss_pred cCCCEEeccccchhhhhhccccHHHHHhcCcCcEEEEEEE--------------eCCcEEEEEEEEccccCCCCCHHHHH
Confidence 99999988765543322110 0111233556666653 3445688998887654 569999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012575 295 LIDVVADQVAVALSHAAILED 315 (460)
Q Consensus 295 ll~~ia~~~a~ai~~a~l~~~ 315 (460)
++..++.++++|++|++++++
T Consensus 148 ~l~~~a~~~a~ai~na~l~~~ 168 (169)
T 3oov_A 148 TIKLFADQASSAIVRINLLKA 168 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999864
No 13
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A*
Probab=99.28 E-value=6.4e-12 Score=113.48 Aligned_cols=167 Identities=19% Similarity=0.259 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhhhcCCceeEEeccCCCCCceEEEEeecCC-c--cCCcccccC-
Q 012575 135 LILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ-I--QIGSSVPIN- 210 (460)
Q Consensus 135 ~l~~~~e~~~~l~~lt~~I~~sld~~~il~~~~~~l~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~- 210 (460)
.++++.++.+.++++++.|++++|++++++++++.+.+.+++|+|.||++++++...........+ . ..+..+|..
T Consensus 7 aL~~~~~~~~~L~~i~~~i~~~~dl~~il~~~~~~l~~~l~~dr~~i~~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 86 (208)
T 2lb5_A 7 AAAARPSRDALINRITHQIRQSLELDQILRATVEEVRAFLGTDRVKVYRFDPEGHGTVVAEARGGERLPSLLGLTFPAGD 86 (208)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHCCSEEEEEECCTTSEEEEEEEEESSCCSCCCTTCEEEGGG
T ss_pred HHHhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHCCCEEEEEEEcCCCCEEEEEEEecCCCCccccCCcCChhh
Confidence 455667788889999999999999999999999999999999999999999987655554444321 1 122222221
Q ss_pred Ch-hHHHHhhcc------------------------CceeecCCCchhhhh-hcccCCCCCcceEEEeeccccCCccccC
Q 012575 211 LP-IVTDVFNSA------------------------QAMRLPYNCPLARIR-LLVGRYVPPDIVAVRVPLLHLSNFQIND 264 (460)
Q Consensus 211 ~~-~~~~~~~~~------------------------~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~pl~~~~~~~~~~ 264 (460)
.| .....+... +++.+++........ ........+.++.+.+|+..
T Consensus 87 ~p~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~l~~~~~~S~l~vPi~~-------- 158 (208)
T 2lb5_A 87 IPEEARRLFRLAQVRVIVDVEAQSRSISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVPLMH-------- 158 (208)
T ss_dssp CCSHHHHHHHHTCCCEECCGGGCCCCCCCSSCCCCCSCCCCCSCSSCCCCHHHHHHHHHTTCSEEEEEEEEE--------
T ss_pred CcHHHHHHHHhCCeEEEeccccccccccccccccccccccccchhhccCCHHHHHHHHhcCCcEEEEEEEEE--------
Confidence 11 112222222 222222211110000 00000012345566666532
Q ss_pred CCcccCCceeEEEEEeeCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 012575 265 WPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILED 315 (460)
Q Consensus 265 ~~~l~~g~~~~~v~~~~~~~~~~~~~~e~~ll~~ia~~~a~ai~~a~l~~~ 315 (460)
++..+|++.+.+..++.|+++|+++++.+|.++|+|++++++|+.
T Consensus 159 ------~~~l~GvL~~~~~~~~~~~~~e~~ll~~la~~~a~ai~~a~l~~~ 203 (208)
T 2lb5_A 159 ------HQELWGLLVSHHAEPRPYSQEELQVVQLLADQVSIAIAQAELSLH 203 (208)
T ss_dssp ------TTEEEEEEEEEESCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ------CCEeEEEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344577777777788999999999999999999999999999865
No 14
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=99.14 E-value=1.5e-10 Score=114.92 Aligned_cols=108 Identities=10% Similarity=0.073 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccccc
Q 012575 339 KAIHARNDFRAVMNHEMRTLMHAII-ALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPF 417 (460)
Q Consensus 339 ~~~~~k~~f~~~iSHELRtPLt~I~-g~~~lL~~~~~~~~~~~~l~~I~~~~~rl~~LI~~LL~~sr~e~g~~~l~~~~~ 417 (460)
+.++.+.+|+++++||+||||++|. |+.+++.....+++.+++++.|.+++.+|..+|+++++++|.+.+...+..+++
T Consensus 116 ~~~~~~~~~l~~i~helrtpL~~i~~g~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~l~~~~~~~~~~~~~~~ 195 (388)
T 1gkz_A 116 ADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTRL 195 (388)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHSSSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTEETTEEEEE
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccceecCCC
Confidence 4456788999999999999999999 777766554556778999999999999999999999999999999988999999
Q ss_pred cHHHHHHHHHHHHhhhc-cc-----ceEeecCCCC
Q 012575 418 NLQIVLREVIIFSSVLQ-NF-----TYRVGTKLAP 446 (460)
Q Consensus 418 ~L~~li~~v~~~~~~~a-~~-----~~~l~~~~~~ 446 (460)
|+.+++++++..+++.+ .. ++.++.+...
T Consensus 196 ~l~~li~~~~~~~~~~~~~~~g~~~~i~i~~~~~~ 230 (388)
T 1gkz_A 196 SPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAA 230 (388)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSCCCCEEEEESTTC
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCcEEEEccCCC
Confidence 99999999999998886 22 5666655443
No 15
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=99.14 E-value=1.2e-09 Score=107.29 Aligned_cols=166 Identities=16% Similarity=0.174 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhhhhcCCceeEEeccCCCCCceEEEEeecCCccCCcccccCChhHHHHhhc
Q 012575 141 ETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNS 220 (460)
Q Consensus 141 e~~~~l~~lt~~I~~sld~~~il~~~~~~l~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (460)
+..+.+.++++.| +++|++++++.+++.+.+.+++++|.||+.++++..+......+........+|.+.+.+..+..+
T Consensus 11 ~~~~~l~~l~~~l-~~~dl~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~g~~g~~~~~ 89 (368)
T 1mc0_A 11 DHDRKILQLCGEL-FDLDATSLQLKVLQYLQQETQATHCCLLLVSEDNLQLSCKVIGDKVLGEEVSFPLTMGRLGQVVED 89 (368)
T ss_dssp HHHHHHHHHHHTC-CCSSHHHHHHHHHHHHHHHSCEEEEEEEEECSSSCEEEEEEETTEEEEEEEEEESSSSSHHHHHHH
T ss_pred cchHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHhCCcEEEEEEEeCCCCeEEEEecCCCccccceeeccccCHHHHHHhc
Confidence 3455688899999 899999999999999999999999999999998776655444332112223456677788999999
Q ss_pred cCceeecCCCchhhhhhcccCCCCCcceEEEeeccccCCccccCCCcccCCceeEEEEEee-CCCCCcccccHHHHHHHH
Q 012575 221 AQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLP-TDGGRKWRDHELELIDVV 299 (460)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~g~~~~~v~~~~-~~~~~~~~~~e~~ll~~i 299 (460)
++++.+++...+....+ ......+....+.+|+... .++..+|++.+. ..+++.|++++.+++..+
T Consensus 90 ~~~~~i~d~~~~~~~~~-~~~~~~~~~s~l~vPl~~~------------~~~~~~Gvl~l~~~~~~~~f~~~d~~~l~~l 156 (368)
T 1mc0_A 90 KQCIQLKDLTSDDVQQL-QNMLGCELQAMLCVPVISR------------ATDQVVALACAFNKLGGDFFTDEDEHVIQHC 156 (368)
T ss_dssp CCCEEGGGSCHHHHHHH-HHHHCSCCCCEEEEEEECT------------TTCSEEEEEEEEEESSCSSCCSHHHHHHHHH
T ss_pred CCeEEeccccccccccc-ccccCcccceEEEEEeecC------------CCCcEEEEEEeecCCCCCCCCHHHHHHHHHH
Confidence 99999988776554221 1111223466777776433 013457777754 444567999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012575 300 ADQVAVALSHAAILEDSMRAR 320 (460)
Q Consensus 300 a~~~a~ai~~a~l~~~~~~~~ 320 (460)
+.++++++.+++++++.++.+
T Consensus 157 a~~~~~al~~~~l~~~~~~~~ 177 (368)
T 1mc0_A 157 FHYTGTVLTSTLAFQKEQKLK 177 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987765443
No 16
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}
Probab=99.13 E-value=4e-10 Score=98.80 Aligned_cols=160 Identities=14% Similarity=0.037 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhhhhcCCceeEEeccCCCCCceEEEEeecCCc--c-CCcccccCChhHHHHhhc
Q 012575 144 RHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQI--Q-IGSSVPINLPIVTDVFNS 220 (460)
Q Consensus 144 ~~l~~lt~~I~~sld~~~il~~~~~~l~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~ 220 (460)
..+.++++.+.++.|++++++.+++.+.+.++++.|.|++.++++ .+......+.+. . .....+...+....++.+
T Consensus 3 ~~L~~i~~~l~~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~~~~~-~l~~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (181)
T 2qyb_A 3 AVRLRASEIMNRTLDLQIIMDDLLNLLLKEFKLDLAVIRLVDEKG-VLRVRSYSGKGIAGIAGKDWEPEIETYIGEAFLS 81 (181)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEECTTS-CEEEEEEEESCTTSTTCSCBCCCTTSHHHHHHHH
T ss_pred hHHHHHHHHHHhccCHHHHHHHHHHHHHHHhCCcEEEEEEECCCC-CEEEEEEeCCCcceecccccccCCCCchhhhhhc
Confidence 357889999999999999999999999999999999999985444 444444333221 1 112233245788899999
Q ss_pred cCceeecCCCchhhhhhcccCCCCCcceEEEeeccccCCccccCCCcccCCceeEEEEEeeC-CCCCcccccHHHHHHHH
Q 012575 221 AQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPT-DGGRKWRDHELELIDVV 299 (460)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~g~~~~~v~~~~~-~~~~~~~~~e~~ll~~i 299 (460)
++++.+++................+....+.+||...++ ..+|++.+.. ..++.|++++.+++..+
T Consensus 82 ~~~~~v~d~~~~~~~~~~~~~~~~g~~s~~~vPl~~~~~-------------~~~GvL~l~~~~~~~~f~~~d~~lL~~l 148 (181)
T 2qyb_A 82 NRLQFVNDTQYMTKPLTRELMQKEGIKSFAHIPISRKGE-------------PPFGILSVFSRTIVGLFNEPFLNLLESL 148 (181)
T ss_dssp TSCEEESCGGGCSCHHHHHHHHHTTCCEEEEEEECCTTS-------------CCCEEEEEEESSCSSCCCHHHHHHHHHH
T ss_pred CCCEEecChhcCCchhhHHHHHhcCcceEEEEEEEeCCC-------------eEEEEEEEecCCCCCCCCHHHHHHHHHH
Confidence 999988765543321111000112345667777644333 1488888887 77889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012575 300 ADQVAVALSHAAILEDSM 317 (460)
Q Consensus 300 a~~~a~ai~~a~l~~~~~ 317 (460)
|.++++||++++.+++..
T Consensus 149 a~~~a~al~~a~~~~~~~ 166 (181)
T 2qyb_A 149 AGQLAQAVKIVTEMEAKE 166 (181)
T ss_dssp HHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999997665543
No 17
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=99.12 E-value=1.3e-09 Score=108.44 Aligned_cols=170 Identities=16% Similarity=0.172 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHhhhhcCCceeEEeccCCCCCceEEEEeecCCccCCcccccCChhHHH
Q 012575 138 TQEETGRHVRMLTHEIRS-TLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTD 216 (460)
Q Consensus 138 ~~~e~~~~l~~lt~~I~~-sld~~~il~~~~~~l~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (460)
++.++...+.++++.+.+ +.|.+++++.+++.+.+.+++++|.||+.++++..+...............+|.+.+....
T Consensus 193 ~~~~~l~~L~~~~~~l~~~~~dl~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (398)
T 1ykd_A 193 QKQRAAAAMMKAVKSLSQSSLDLEDTLKRVMDEAKELMNADRSTLWLIDRDRHELWTKITQDNGSTKELRVPIGKGFAGI 272 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHTTEEEEEEEEEETTTTEEEEEEECSSSCEEEEEEETTSHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhCcCeEEEEEEECCCCEEEEEEecCCCceeeeeccCCCchhhH
Confidence 344556678899999999 9999999999999999999999999999999877666554422222223345667788899
Q ss_pred HhhccCceeec-CCCchhhhhhc---ccCCCCCcceEEEeeccccCCccccCCCcccCCceeEEEEEeeCCC--------
Q 012575 217 VFNSAQAMRLP-YNCPLARIRLL---VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDG-------- 284 (460)
Q Consensus 217 ~~~~~~~~~l~-~~~~~~~~~~~---~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~g~~~~~v~~~~~~~-------- 284 (460)
+..+++++.++ +...+..+... ......+.++.+.+||.. .++..+||+.+.+..
T Consensus 273 v~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~-------------~~~~~iGvl~l~~~~~~~~~~~~ 339 (398)
T 1ykd_A 273 VAASGQKLNIPFDLYDHPDSATAKQIDQQNGYRTCSLLCMPVFN-------------GDQELIGVTQLVNKKKTGEFPPY 339 (398)
T ss_dssp HHHHCCCEEECSCGGGSTTCHHHHHHHHHHTCCCCCEEEEEEEC-------------SSSCEEEEEEEEEECCSSCCCCC
T ss_pred HhccCCeEEeccccccCcccCcccchhhhcCCeeeeEEEEeeec-------------CCCCEEEEEEEEecCCccccccc
Confidence 99999999988 65544332211 000112345677777742 233357777776554
Q ss_pred ------------CCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012575 285 ------------GRKWRDHELELIDVVADQVAVALSHAAILEDSMRAR 320 (460)
Q Consensus 285 ------------~~~~~~~e~~ll~~ia~~~a~ai~~a~l~~~~~~~~ 320 (460)
++.|++++.++++.+|.++++||+|+++|++.++..
T Consensus 340 ~~~~~~~~~~~~~~~f~~~d~~ll~~la~~~a~al~na~l~~~~~~~~ 387 (398)
T 1ykd_A 340 NPETWPIAPECFQASFDRNDEEFMEAFNIQAGVALQNAQLFATVKQQE 387 (398)
T ss_dssp CGGGTTCCCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999998865543
No 18
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=99.11 E-value=9.6e-10 Score=105.61 Aligned_cols=171 Identities=12% Similarity=0.067 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhhhhcCCceeEEeccCCCCCceEEEEeecCCcc--CCcccccC-Chh-HHH
Q 012575 141 ETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQ--IGSSVPIN-LPI-VTD 216 (460)
Q Consensus 141 e~~~~l~~lt~~I~~sld~~~il~~~~~~l~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~-~~~ 216 (460)
+..++++.++..|++++|+++|++++++++++.+|+|||.||.+++++.+..+.+...++++ .|..+|.. .|. ...
T Consensus 144 ~~~~ll~~i~~~Ir~sl~l~~il~~tv~evr~ll~~DRV~IYrF~~d~~G~VvaEs~~~~~~s~lGl~~p~~dip~~ar~ 223 (337)
T 2ool_A 144 EFFRSVRVAIRRLQTAADLPTACWIAASEVRRITGFDRIKVYQFAADWSGQVIAEDRDSGIPSLLDFHFPSSDIPAQSRA 223 (337)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTCCCCTTCEECGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCeeEEEEEcCCCCEEEEEEEccCCCccccCCCCCccccHHHHHH
Confidence 45678999999999999999999999999999999999999999999998888887776543 23333332 222 233
Q ss_pred HhhccCceeecCCCchhh-hhhc-----ccC---------CCCCcceEEEeeccccCCccccCCCcccCCceeEEEEEee
Q 012575 217 VFNSAQAMRLPYNCPLAR-IRLL-----VGR---------YVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLP 281 (460)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~-~~~~-----~~~---------~~~~~~~~~~~pl~~~~~~~~~~~~~l~~g~~~~~v~~~~ 281 (460)
....+....+.+...... +... ... ...+....| |..++-......|.+..|..++.+.+++
T Consensus 224 ly~~~~vr~I~Di~~~~v~~~~~~~~~~~~~ldl~~~~lr~~sp~h~ey---L~nm~v~AsLvvpI~~~~~LWGLl~~Hh 300 (337)
T 2ool_A 224 LYTINPVRIIPDIGYRPSPLVPDINPRLGGPIDLSFSVLRSVSPTHLEY---MVNMGMHAAMSISIVRDNRLWGMISCHN 300 (337)
T ss_dssp HHHHSCEEEESCTTCCCEEEESCCCTTTCSSCCCTTCTTBCCCHHHHHH---HHHHTCCEEEEEEEEETTEEEEEEEEEE
T ss_pred HHHhCCEEEEEccCCCccccccccccccCCCcccccccccCCCHHHHHH---HHHcCccccEEEEEEECCeeEEEEEEec
Confidence 333344434443322100 0000 000 000000000 0000111112345566777788888888
Q ss_pred CCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 012575 282 TDGGRKWRDHELELIDVVADQVAVALSHAAILED 315 (460)
Q Consensus 282 ~~~~~~~~~~e~~ll~~ia~~~a~ai~~a~l~~~ 315 (460)
+. +|.|+..+..+++.++.+++++|.++..+++
T Consensus 301 ~~-pR~w~~~e~~~~e~la~~l~iai~q~e~~~~ 333 (337)
T 2ool_A 301 LT-PRFVSYEVRQACELIAQVLTWQIGVLEEAEI 333 (337)
T ss_dssp SS-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76 9999999999999999999999988766554
No 19
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=99.09 E-value=1.9e-09 Score=108.88 Aligned_cols=173 Identities=6% Similarity=-0.008 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhhhhcCCceeEEeccCCCCCceEEEEeecCCcc--CCcccccC-ChhH-HH
Q 012575 141 ETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQ--IGSSVPIN-LPIV-TD 216 (460)
Q Consensus 141 e~~~~l~~lt~~I~~sld~~~il~~~~~~l~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~-~~ 216 (460)
+..++++.++..|++++|+++|++++++++++.+|+|||.||.+++++.+..+.++..++++ .|..+|.. .|.. ..
T Consensus 122 ~~~~ll~~i~~~Ir~sl~l~~il~~~v~evr~ll~~DRV~IYrF~~d~~G~VvaEs~~~~~~s~LGl~~p~~diP~~ar~ 201 (505)
T 3nhq_A 122 SFTLNAQRIIAQVQLHNDTASLLSNVTDELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQARR 201 (505)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCEEEEEEEeCCCchhhcCCccCcccCHHHHHH
Confidence 44567999999999999999999999999999999999999999999988888877776543 33334432 2222 23
Q ss_pred HhhccCceeecCCCchhh-h---------hhcccC-----CCCCcceEEEeeccccCCccccCCCcccCCceeEEEEEee
Q 012575 217 VFNSAQAMRLPYNCPLAR-I---------RLLVGR-----YVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLP 281 (460)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~-~---------~~~~~~-----~~~~~~~~~~~pl~~~~~~~~~~~~~l~~g~~~~~v~~~~ 281 (460)
....+....+.+...... + .+.... ...+....|- ..++-......|.+..|..++.+.+.+
T Consensus 202 ly~~~~vr~I~Dv~~~~~~l~~~~~~~~~~pldLs~~~lR~~sp~h~eyL---~nmgV~AsLvvpI~~~~~LWGLl~~Hh 278 (505)
T 3nhq_A 202 LYIQNPIRLIADVAYTPMRVFPALNPETNESFDLSYSVLRSVSPIHCEYL---TNMGVRASMSISIVVGGKLWGLFSCHH 278 (505)
T ss_dssp HHHHCSEEEESCTTCCCEEEESSEETTTTEECCCTTCTTBCCCHHHHHHH---HHHTCCEEEEEEEECSSSEEEEEEEEE
T ss_pred HHHcCCEEEEcCCCCCccccccccccccCCcccccccccccCCHHHHHHH---HhcCCceEEEEEEEECCEEEEEEEEec
Confidence 333344444444332110 0 000000 0000000000 000111112345566677777777777
Q ss_pred CCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012575 282 TDGGRKWRDHELELIDVVADQVAVALSHAAILEDSM 317 (460)
Q Consensus 282 ~~~~~~~~~~e~~ll~~ia~~~a~ai~~a~l~~~~~ 317 (460)
+. +|.|+..+..+++.++.+++++|.++..+++.+
T Consensus 279 ~~-pR~w~~~er~~~e~la~~ls~al~q~~~~~~~~ 313 (505)
T 3nhq_A 279 MS-PKLIPYPVRMSFQIFSQVCSAIVERLEQGRIAE 313 (505)
T ss_dssp SS-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 75 899999999999999999999999887766543
No 20
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=99.09 E-value=1.4e-11 Score=112.00 Aligned_cols=99 Identities=19% Similarity=0.211 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccccccHHHHH
Q 012575 345 NDFRAVMNHEMRTLMHAIIALSSLLLETDL-TPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVL 423 (460)
Q Consensus 345 ~~f~~~iSHELRtPLt~I~g~~~lL~~~~~-~~~~~~~l~~I~~~~~rl~~LI~~LL~~sr~e~g~~~l~~~~~~L~~li 423 (460)
.+|++.+||||||||++|.++++++..... +++.+++++.|.++++++.++++++++++|.+.+....+.+++++.+++
T Consensus 3 ~~~~~~~~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~~~~ 82 (222)
T 3jz3_A 3 RRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDLL 82 (222)
T ss_dssp -------------------------------------CEECCC-CHHHHHHHHHHHHHHHTCCCSTTSTTCEEEEHHHHH
T ss_pred HHHHHHHhHHhcCcHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCcccCCHHHHH
Confidence 479999999999999999999999876533 3444788999999999999999999999999998888999999999999
Q ss_pred HHHHHHHhhhc---ccceEeecC
Q 012575 424 REVIIFSSVLQ---NFTYRVGTK 443 (460)
Q Consensus 424 ~~v~~~~~~~a---~~~~~l~~~ 443 (460)
++++..+...+ ++.+.++.+
T Consensus 83 ~~~~~~~~~~~~~~~i~~~~~~~ 105 (222)
T 3jz3_A 83 QSSVMDIYHTAQQAKIDVRLTLN 105 (222)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEES
T ss_pred HHHHHHHHHHHHHhCCeEEEeeC
Confidence 99998887775 344444443
No 21
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A
Probab=99.07 E-value=1.7e-09 Score=92.23 Aligned_cols=135 Identities=20% Similarity=0.183 Sum_probs=105.5
Q ss_pred cHHHHHHHHHHHhhhhcCCceeEEeccCCCC----CceEEEEeecCC--ccCCcccccCChhHHHHhhccCceeecCCCc
Q 012575 158 DRHTILKTTLVELGRTLGLEECALWMPSRTG----LNLELSYTLNNQ--IQIGSSVPINLPIVTDVFNSAQAMRLPYNCP 231 (460)
Q Consensus 158 d~~~il~~~~~~l~~~l~~~~~~i~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (460)
|++++|+.+++.+.+.+++++|.|+++++++ ..+......+.. ...+..++.+.+....++.+++++.+++...
T Consensus 1 ~~~~~L~~i~~~a~~~~~ad~~~i~l~~~~~~~~~~~l~~~a~~g~~~~~~~~~~~~~~~g~~g~v~~~g~~v~v~d~~~ 80 (149)
T 2vjw_A 1 DPATVFRLVAAEALTLTGADGTLVAVPADPDASAAEELVIVEVAGAVPAEVEASAIPVQDNAIGQAFRDRAPRRLDVLDG 80 (149)
T ss_dssp CTHHHHHHHHHHHHHHHCCSEEEEEEECC----CCSEEEEEEEEETSCGGGTTCEEESSSSHHHHHHHHCCCEEESCCCT
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEEEcCCCCCcCceEEEEEEecCChHhhcCcccCCCCCHHHHHhhcCceEEecCccc
Confidence 5688999999999999999999999998774 455555444432 3345567778889999999999999987654
Q ss_pred hhhhhhcccCCCCCcceEEEeeccccCCccccCCCcccCCceeEEEEEeeCC-CCCcccccHHHHHHHHHHHHHHHHHHH
Q 012575 232 LARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD-GGRKWRDHELELIDVVADQVAVALSHA 310 (460)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~g~~~~~v~~~~~~-~~~~~~~~e~~ll~~ia~~~a~ai~~a 310 (460)
+. +..+.+++||.. ++..+|++.+.+. +++.|++++.+++..+|.|++++++|+
T Consensus 81 d~-----------~~~s~l~vPL~~--------------~~~~~GvL~l~~~~~~~~f~~~d~~ll~~lA~~aa~al~~a 135 (149)
T 2vjw_A 81 PG-----------LGGPALVLPLRA--------------TDTVAGVLVAVQGSGARPFTAEQLEMMTGFADQAAVAWQLA 135 (149)
T ss_dssp TS-----------CEEEEEEEEEEE--------------TTEEEEEEEEEEETTCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-----------CCCeEEEEEEcc--------------CCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 32 456777888643 3446888888776 778999999999999999999999999
Q ss_pred HHHHHHH
Q 012575 311 AILEDSM 317 (460)
Q Consensus 311 ~l~~~~~ 317 (460)
+.+++.+
T Consensus 136 ~~~~~~~ 142 (149)
T 2vjw_A 136 SSQRRMS 142 (149)
T ss_dssp HHHHHTC
T ss_pred HHHHHHH
Confidence 9886643
No 22
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=99.06 E-value=5e-09 Score=102.84 Aligned_cols=166 Identities=10% Similarity=0.092 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHhhhhcCCceeEEeccCCCCCceEEEEeec---CCccCCcccccCChh
Q 012575 138 TQEETGRHVRMLTHEIRST-LDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLN---NQIQIGSSVPINLPI 213 (460)
Q Consensus 138 ~~~e~~~~l~~lt~~I~~s-ld~~~il~~~~~~l~~~l~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 213 (460)
++++..+.+.++++.+.++ .|.+++++.+++.+.+.+++++|.|++.+++ .+......+ +....+..+|...+.
T Consensus 175 ~~~~~l~~l~~i~~~l~~~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~--~l~~~~~~g~~~~~~~~~~~~~~~~~~ 252 (368)
T 1mc0_A 175 KLKCECQALLQVAKNLFTHLDDVSVLLQEIITEARNLSNAEICSVFLLDQN--ELVAKVFDGGVVDDESYEIRIPADQGI 252 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTEEEEEEEEECSS--SEEEEEETTEECCCSTTCCEECTTSHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhcccEEEEEEEeCC--ceEEEEeccccccccccceeecCCCce
Confidence 3455567789999999999 6999999999999999999999999999883 333333321 222334456777888
Q ss_pred HHHHhhccCceeecCCCchhhhhhcccC-CCCCcceEEEeeccccCCccccCCCcccCCceeEEEEEeeCCCC-Cccccc
Q 012575 214 VTDVFNSAQAMRLPYNCPLARIRLLVGR-YVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGG-RKWRDH 291 (460)
Q Consensus 214 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~pl~~~~~~~~~~~~~l~~g~~~~~v~~~~~~~~-~~~~~~ 291 (460)
...++.+++++.+++...+..+...... ........+.+||... .+..+|++.+....+ +.|+++
T Consensus 253 ~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~-------------~~~~iGvl~l~~~~~~~~f~~~ 319 (368)
T 1mc0_A 253 AGHVATTGQILNIPDAYAHPLFYRGVDDSTGFRTRNILCFPIKNE-------------NQEVIGVAELVNKINGPWFSKF 319 (368)
T ss_dssp HHHHHHHCCCEEESCSTTCTTCCCTTHHHHTCCCCCEEEEEEECT-------------TSCEEEEEEEEEETTSSSCCHH
T ss_pred eeeehhhCCEEEecCcccCcccchhhhhccCCccceEEEEeeECC-------------CCcEEEEEEEEECCCCCCCCHH
Confidence 9999999999998876654432210000 0011256667776432 134578888876655 479999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012575 292 ELELIDVVADQVAVALSHAAILEDSMR 318 (460)
Q Consensus 292 e~~ll~~ia~~~a~ai~~a~l~~~~~~ 318 (460)
+.+++..+|.++++||+|++++++.++
T Consensus 320 d~~ll~~la~~~a~ai~na~l~~~~~~ 346 (368)
T 1mc0_A 320 DEDLATAFSIYCGISIAHSLLYKKVNE 346 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988654
No 23
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=99.05 E-value=3.3e-09 Score=113.27 Aligned_cols=172 Identities=11% Similarity=0.094 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHHHh-cccHHHHHHHHHHHhhhhcCCceeEEeccCCCCCceEEEEeecC---CccCCcccccCChhHH
Q 012575 140 EETGRHVRMLTHEIRS-TLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNN---QIQIGSSVPINLPIVT 215 (460)
Q Consensus 140 ~e~~~~l~~lt~~I~~-sld~~~il~~~~~~l~~~l~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 215 (460)
.++.+.+.++++.+.+ +.|.+++++.+++.+.+.+++++|.|++.+++ .+......+. ....+..+|.+.+...
T Consensus 177 ~~~l~~L~ei~~~l~~~~~dl~~ll~~i~~~~~~~l~ad~~~i~L~d~~--~l~~~~~~g~~~~~~~~~~~~~~~~gi~g 254 (691)
T 3ibj_A 177 KCECQALLQVAKNLFTHLDDVSVLLQEIITEARNLSNAEICSVFLLDQN--ELVAKVFDGGVVDDESYEIRIPADQGIAG 254 (691)
T ss_dssp HHHHHHHHHHHHHHTTCCSCTTTHHHHHHHHHHHHHTEEEEEEEEECSS--EEEEECCSSSCCSSCCCEEEEETTSHHHH
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhCCCeEEEEEEeCC--eEEEEeecCCcccccccceeccCCCCHHH
Confidence 3556778899999999 79999999999999999999999999999883 2333222221 1122345677788999
Q ss_pred HHhhccCceeecCCCchhhhhhcc-cCCCCCcceEEEeeccccCCccccCCCcccCCceeEEEEEeeCCC-CCcccccHH
Q 012575 216 DVFNSAQAMRLPYNCPLARIRLLV-GRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDG-GRKWRDHEL 293 (460)
Q Consensus 216 ~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~g~~~~~v~~~~~~~-~~~~~~~e~ 293 (460)
.+..+++++.+++...+.++.... .....+.+..+.+||...+ +..+||+.+.+.. ++.|++++.
T Consensus 255 ~v~~~g~~v~i~d~~~d~~~~~~~~~~~g~~~rS~L~vPL~~~~-------------g~viGVL~l~~~~~~~~f~~~d~ 321 (691)
T 3ibj_A 255 HVATTGQILNIPDAYAHPLFYRGVDDSTGFRTRNILCFPIKNEN-------------QEVIGVAELVNKINGPWFSKFDE 321 (691)
T ss_dssp HHHHHCSCEEESCSTTSTTC------CCSCCCCCEEEEECCCSS-------------SCCCEEEEEEEESSSSSCCTTTT
T ss_pred HHHHhCCEEEecCcccCccccchhhcccCCeeeeEEEEeEECCC-------------CCEEEEEEEEECCCCCCCCHHHH
Confidence 999999999998877655442111 1111224566777764431 2347777776554 447999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012575 294 ELIDVVADQVAVALSHAAILEDSMRARNQLMEQ 326 (460)
Q Consensus 294 ~ll~~ia~~~a~ai~~a~l~~~~~~~~~~l~~~ 326 (460)
++++.+|.++|+||+|+++|++.++.+++.+..
T Consensus 322 ~ll~~lA~~~aiAIena~l~~~l~~~~~~~~~~ 354 (691)
T 3ibj_A 322 DLATAFSIYCGISIAHSLLYKKVNEAQYRSHLA 354 (691)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988776554443
No 24
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=99.05 E-value=2.6e-09 Score=108.15 Aligned_cols=171 Identities=9% Similarity=0.008 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHhhhhcCCceeEEeccCCCCCceEEEEeecCCcc--CCcccccC-ChhH-HHHh
Q 012575 143 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQ--IGSSVPIN-LPIV-TDVF 218 (460)
Q Consensus 143 ~~~l~~lt~~I~~sld~~~il~~~~~~l~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~-~~~~ 218 (460)
.++++.++..|++++|+++|++++++++++.+|+|||.||.+++++.+..+.++..++++ .|..+|.. .|.. ....
T Consensus 137 ~~ll~~i~~~Ir~sl~l~~il~~~v~evr~ll~~DRVmIYrF~~d~~G~VvAEs~~~~~~s~LGl~~p~~diP~~ar~ly 216 (520)
T 3zq5_A 137 YHMANAALNRLRQQANLRDFYDVIVEEVRRMTGFDRVMLYRFDENNHGDVIAEDKRDDMEPYLGLHYPESDIPQPARRLF 216 (520)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTEEECGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEEEcCCCcEEEEEEEeCCCchhhcCCccChhhhhHHHHHHH
Confidence 467899999999999999999999999999999999999999999988888777776543 23333432 2222 3333
Q ss_pred hccCceeecCCCchhh-hh---------hcccC-----CCCCcceEEEeeccccCCccccCCCcccCCceeEEEEEeeCC
Q 012575 219 NSAQAMRLPYNCPLAR-IR---------LLVGR-----YVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD 283 (460)
Q Consensus 219 ~~~~~~~l~~~~~~~~-~~---------~~~~~-----~~~~~~~~~~~pl~~~~~~~~~~~~~l~~g~~~~~v~~~~~~ 283 (460)
..+....+.+...... +. +.... ...+....| |..++-......|.+..|..++.+.+.++
T Consensus 217 ~~~~vr~I~Di~~~pv~l~~~~~~~~~~pldL~~s~lr~~sp~h~ey---L~nmgV~AsLvvpI~~~~~LWGLl~~Hh~- 292 (520)
T 3zq5_A 217 IHNPIRVIPDVYGVAVPLTPAVNPSTNRAVDLTESILRSAYHCHLTF---LKNMGVGASLTISLIKDGHLWGLIACHHQ- 292 (520)
T ss_dssp HHCCEEEESCTTCCCEEEESSSCTTTSSCCCCTTCSSBCCCHHHHHH---HHHTTCSEEEEEEEEETTEEEEEEEEEES-
T ss_pred HcCCEEEEcCCCCCceeeecccccccCCcccccccccccCCHHHHHH---HHhcCCcEEEEEeEEECCEEEEEEEEecC-
Confidence 4444444444332100 00 00000 000000000 00011111223455666777777777776
Q ss_pred CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012575 284 GGRKWRDHELELIDVVADQVAVALSHAAILEDSM 317 (460)
Q Consensus 284 ~~~~~~~~e~~ll~~ia~~~a~ai~~a~l~~~~~ 317 (460)
++|.|+..+.++++.++.+++++|.++..+++.+
T Consensus 293 ~pR~w~~~er~~~e~la~~lsiai~q~e~~~~~~ 326 (520)
T 3zq5_A 293 TPKVIPFELRKACEFFGRVVFSNISAQEDTETFD 326 (520)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999887776543
No 25
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=99.05 E-value=9.9e-10 Score=104.39 Aligned_cols=164 Identities=9% Similarity=0.041 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHhhhhcCCceeEEeccCCCCCceEEEEeecCCccC--CcccccC-Chh-HHHHh
Q 012575 143 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQI--GSSVPIN-LPI-VTDVF 218 (460)
Q Consensus 143 ~~~l~~lt~~I~~sld~~~il~~~~~~l~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~-~~~~~ 218 (460)
.++++.++.+|++++|+++|++++++++++.+|+|||.||.+++++.+..+.++..++++. |..+|.. -|. .....
T Consensus 133 ~~ll~~i~~rIr~sldl~~il~~av~evr~llg~DRVmIYrF~~d~~G~VvAEs~~~~~~s~LGl~~p~~dip~~ar~ly 212 (327)
T 4e04_A 133 FRSVRSAIRRLQAAETLESACAAAAQEVREITGFDRVMIYRFASDFSGEVIAEDRCAEVESYLGLHFPASDIPAQARRLY 212 (327)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHCCCeEEEEEEcCCCCEEEEEEEecCCCcCccCCccccccchHHHHHHH
Confidence 4578999999999999999999999999999999999999999999988888888776432 3333432 222 22333
Q ss_pred hccCceeecCCCchhh-hh---------hcccC-----CCCCcceEEEeeccccCCccccCCCcccCCceeEEEEEeeCC
Q 012575 219 NSAQAMRLPYNCPLAR-IR---------LLVGR-----YVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD 283 (460)
Q Consensus 219 ~~~~~~~l~~~~~~~~-~~---------~~~~~-----~~~~~~~~~~~pl~~~~~~~~~~~~~l~~g~~~~~v~~~~~~ 283 (460)
..+....+.+...... +. ..... ...+....| |..++-......|.+..|..++.+.+.+ .
T Consensus 213 ~~~~vr~I~Di~~~~v~l~~~~~~~~~~~ldls~s~lr~~spcH~ey---L~nmgV~AsLvvpI~~~~~LWGLl~~Hh-~ 288 (327)
T 4e04_A 213 TINPVRIIPDINYRPVPVTPDLNPRTGRPIDLSFAILRSVSPVHLEY---MRNIGMHGTMSISILRGERLWGLIACHH-R 288 (327)
T ss_dssp HHSCEEEESCTTCCCEEEESCCCTTTSSCCCCTTCTTBCCCHHHHHH---HHHTTCCEEEEEEEEETTEEEEEEEEEE-S
T ss_pred HcCCEEEEeCCCCCccccccccccccCCcccccccccccCCHHHHHH---HHHhCCcEEEEEEEEECCEEEEEEEEec-C
Confidence 4444444444332100 00 00000 000000000 0000111112345566667777777765 5
Q ss_pred CCCcccccHHHHHHHHHHHHHHHHHHH
Q 012575 284 GGRKWRDHELELIDVVADQVAVALSHA 310 (460)
Q Consensus 284 ~~~~~~~~e~~ll~~ia~~~a~ai~~a 310 (460)
++|.|+..+..+++.++.+++++|.+.
T Consensus 289 ~pR~w~~~er~~~e~la~~lsiaI~~~ 315 (327)
T 4e04_A 289 KPNYVDLEVRQACELVAQVLAWQIGVM 315 (327)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999654
No 26
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=99.03 E-value=8.7e-10 Score=105.08 Aligned_cols=169 Identities=7% Similarity=0.024 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhhhhcCCceeEEeccCCCCCceEEEEeecCCcc--CCcccccC-Chh-HHH
Q 012575 141 ETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQ--IGSSVPIN-LPI-VTD 216 (460)
Q Consensus 141 e~~~~l~~lt~~I~~sld~~~il~~~~~~l~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~-~~~ 216 (460)
+..++++.++.+|++++|+++|++++++++++.+|+|||.||.+++++.+..+.++..++++ .+..+|.. .|. ...
T Consensus 149 ~~~~ll~~i~~rIr~sldl~~ilq~tV~eVR~llg~DRVmIYrF~~d~~GeVvAEs~~~~~~s~LGl~~pasdiP~~ar~ 228 (343)
T 3s7o_A 149 TGPHALRNAMFALESAPNLRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASHIPAQARA 228 (343)
T ss_dssp CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTCCCCTTCEECGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCeEEEEEEcCCCCEEEEEEEecCCcccccCCccccccCHHHHHH
Confidence 45678999999999999999999999999999999999999999999998888888877543 23333432 222 233
Q ss_pred HhhccCceeecCCCchhh-h---------hhcccC-----CCCCcceEEEeeccccCCccccCCCcccCCceeEEEEEee
Q 012575 217 VFNSAQAMRLPYNCPLAR-I---------RLLVGR-----YVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLP 281 (460)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~-~---------~~~~~~-----~~~~~~~~~~~pl~~~~~~~~~~~~~l~~g~~~~~v~~~~ 281 (460)
....++...+.+...... + ...... ...+....| |..++-......|.+..|..++.+.+.+
T Consensus 229 ly~~~~vr~I~Di~~~pv~l~~~~~~~~~~~ldLs~s~lR~~spcH~ey---L~nmgV~AsLvvpI~~~~~LWGLL~~Hh 305 (343)
T 3s7o_A 229 LYTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVLRATSPMHMQY---LRNMGVGSSLSVSVVVGGQLWGLIACHH 305 (343)
T ss_dssp HHHHSCEEEESCTTCCCEEEESSEETTTTEECCCTTCTTBCCCHHHHHH---HHHTTCSEEEEEEEEETTEEEEEEEEEE
T ss_pred HHHcCCEEEEeccCCCccccccccccccCCcccccccccccCCHHHHHH---HHHcCCcEEEEEEEEECCEEEEEEEEEc
Confidence 333344444444332100 0 000000 000000000 0000111112345566677777777777
Q ss_pred CCCCCcccccHHHHHHHHHHHHHHHHHHHHHH
Q 012575 282 TDGGRKWRDHELELIDVVADQVAVALSHAAIL 313 (460)
Q Consensus 282 ~~~~~~~~~~e~~ll~~ia~~~a~ai~~a~l~ 313 (460)
.++|.|+..+.++++.++.+++++|.+..-+
T Consensus 306 -~~pR~w~~~er~~~e~la~~lsiaI~~~~~~ 336 (343)
T 3s7o_A 306 -QTPYVLPPDLRTTLESLGRLLSLQVQVKEAL 336 (343)
T ss_dssp -SSCCCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -CCCcCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7899999999999999999999999665443
No 27
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*
Probab=99.01 E-value=1.6e-09 Score=91.61 Aligned_cols=146 Identities=14% Similarity=0.146 Sum_probs=105.2
Q ss_pred hcccHHHHHHHHHHHhhhhcCCceeEEeccCCCCCceEEEEeecCCc--cCC-cccccCChhHHHHhhccCceeecCCCc
Q 012575 155 STLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQI--QIG-SSVPINLPIVTDVFNSAQAMRLPYNCP 231 (460)
Q Consensus 155 ~sld~~~il~~~~~~l~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (460)
+++|++++++.+++.+.+.+++++|.+++.+++ ..+......+... ... ...+...+....++.+++++.+.+...
T Consensus 3 ~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~-~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 81 (153)
T 2w3g_A 3 MDPDLEATLRAIVHSATSLVDARYGAMEVHDRQ-HRVLHFVYEGIDEETVRRIGHLPKGLGVIGLLIEDPKPLRLDDVSA 81 (153)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTEEEEEEEEECTT-CCEEEEEEESCCHHHHHHHCSCCCSCTHHHHHHHSCSCEEESSGGG
T ss_pred CccCHHHHHHHHHHHHHHHhCCCEEEEEEECCC-CCEEEEEEecCCHHHHHhhccCCCCCCHHHHHHhcCCcEEecCccc
Confidence 467899999999999999999999999999955 3444444444321 111 245567788899999999999887655
Q ss_pred hhhhhhcccCCCCCcceEEEeeccccCCccccCCCcccCCceeEEEEEeeCCCC-CcccccHHHHHHHHHHHHHHHHHHH
Q 012575 232 LARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGG-RKWRDHELELIDVVADQVAVALSHA 310 (460)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~g~~~~~v~~~~~~~~-~~~~~~e~~ll~~ia~~~a~ai~~a 310 (460)
+..+..... ...+....+.+||. .++..+|++.+....+ +.|++++.+++..++.+++.+++|+
T Consensus 82 ~~~~~~~~~-~~~~~~s~l~vPl~--------------~~~~~~Gvl~l~~~~~~~~f~~~~~~~l~~la~~~a~ai~~a 146 (153)
T 2w3g_A 82 HPASIGFPP-YHPPMRTFLGVPVR--------------VRDESFGTLYLTDKTNGQPFSDDDEVLVQALAAAAGIAVANA 146 (153)
T ss_dssp STTCCCCCT-TCCCCCCEEEEEEE--------------ETTEEEEEEEEEEETTSCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhcCCCC-cCCCCCeEEEeeEE--------------ECCEEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 433321111 22234566666754 3444688888877665 7999999999999999999999999
Q ss_pred HHHHHH
Q 012575 311 AILEDS 316 (460)
Q Consensus 311 ~l~~~~ 316 (460)
+++++.
T Consensus 147 ~l~~~~ 152 (153)
T 2w3g_A 147 RLYQQA 152 (153)
T ss_dssp HHHC--
T ss_pred HHHHhc
Confidence 998763
No 28
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0
Probab=99.01 E-value=1.7e-08 Score=87.35 Aligned_cols=147 Identities=10% Similarity=0.065 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHhhhhcCCceeEEeccCCCCCceEEEEeecCCccCCcccccCChhHHHHhhcc
Q 012575 142 TGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSA 221 (460)
Q Consensus 142 ~~~~l~~lt~~I~~sld~~~il~~~~~~l~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (460)
-..++.++++.+..+.|+++.+..++..+.+.+++++|.+|+.++++..+.+....+.. ....++.+.+....+..++
T Consensus 15 ~~~ll~~i~~ll~~~~dl~~~L~~v~~~l~~~l~~~~~~iyL~d~~~~~L~l~a~~G~~--~~~~i~~geGi~G~v~~~g 92 (167)
T 3mmh_A 15 YREVLPQIESVVADETDWVANLANTAAVLKEAFGWFWVGFYLVDTRSDELVLAPFQGPL--ACTRIPFGRGVCGQAWAKG 92 (167)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHCCSEEEEEEEETTTTEEEEEEEESSC--CCSEEETTSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcEEEEEEEECCCCEEEEEEecccc--cceEeccCCChHHHHHhCC
Confidence 34567888888999999999999999999999999999999999888777777666542 3456788899999999999
Q ss_pred CceeecCCCchhhhhhcccCCCCCcceEEEeeccccCCccccCCCcccCCceeEEEEEeeCCCCCcccccHHHHHHHHHH
Q 012575 222 QAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVAD 301 (460)
Q Consensus 222 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~g~~~~~v~~~~~~~~~~~~~~e~~ll~~ia~ 301 (460)
+++.+++...+..+- ....+.++.+++|+.. ++..+||+.+.+..++.|++++.++++.+|.
T Consensus 93 ~~~~v~Dv~~~p~~~----~~~~~~~S~i~vPi~~--------------~g~viGVL~i~s~~~~~F~~~d~~~L~~lA~ 154 (167)
T 3mmh_A 93 GTVVVGDVDAHPDHI----ACSSLSRSEIVVPLFS--------------DGRCIGVLDADSEHLAQFDETDALYLGELAK 154 (167)
T ss_dssp SCEEESCGGGSTTCC----CSSTTCCEEEEEEEEE--------------TTEEEEEEEEEESSTTCCCHHHHHHHHHHHH
T ss_pred cEEEECCcccCcchh----hcCccCCeEEEEEecc--------------CCEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 999999887654432 1123456778888743 3446999999988888999999999999999
Q ss_pred HHHHHHH
Q 012575 302 QVAVALS 308 (460)
Q Consensus 302 ~~a~ai~ 308 (460)
+++.++.
T Consensus 155 ~la~~i~ 161 (167)
T 3mmh_A 155 ILEKRFE 161 (167)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987764
No 29
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}
Probab=99.00 E-value=6.1e-10 Score=94.62 Aligned_cols=144 Identities=10% Similarity=0.025 Sum_probs=99.3
Q ss_pred cccHHHHHHHHHHHhhhhcCCceeEEeccCCCCCceEEEEeecCCccCCcccccCChhHHHHhhccCceeecCCCchhhh
Q 012575 156 TLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARI 235 (460)
Q Consensus 156 sld~~~il~~~~~~l~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 235 (460)
|.|++++++.+++.+.+.+++++|.|++.++++ .+......+.+.... ..+...+....++.+++++.+++...+...
T Consensus 1 S~~l~~~l~~~~~~~~~~~~~~~~~i~l~d~~~-~l~~~a~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~i~d~~~~~~~ 78 (151)
T 3hcy_A 1 SNAIEEVYEATLDAIQGALNCDRASILLFDEAG-TMRFVAARGLSEHYQ-RAVDGHSPWITGANEPEPIFVENVDDAEFS 78 (151)
T ss_dssp CCCCHHHHHHHHHHHHHHHCCSEEEEEEECTTS-CEEEEEEESCCHHHH-HHTCBCCSCC---CCCCCEEESCGGGSCCC
T ss_pred CccHHHHHHHHHHHHHHhhcCCEEEEEEEcCCC-cEEEEeeCCCCHHHH-hhccCCCchhhhhhcCCcEEEeChhhCccc
Confidence 468899999999999999999999999999987 565555544321100 112234456677888888888776554322
Q ss_pred hhc-ccCCCCCcceEEEeeccccCCccccCCCcccCCceeEEEEEeeCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHH
Q 012575 236 RLL-VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILE 314 (460)
Q Consensus 236 ~~~-~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~g~~~~~v~~~~~~~~~~~~~~e~~ll~~ia~~~a~ai~~a~l~~ 314 (460)
... ......+-...+.+||.. ++..+|++.+....++.|++++.+++..++.+++.|+++++..+
T Consensus 79 ~~~~~~~~~~g~~s~~~vPl~~--------------~~~~iGvl~~~~~~~~~f~~~~~~ll~~~a~~~a~ai~~~r~~~ 144 (151)
T 3hcy_A 79 RELKESIVGEGIAALGFFPLVT--------------EGRLIGKFMTYYDRPHRFADSEIGMALTIARQLGFSIQRMRAEY 144 (151)
T ss_dssp HHHHHHHHHHTCCEEEEEEEES--------------SSSEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHhcCchheEEeceEE--------------CCEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 001112335667777643 34468888888887889999999999999999999999997754
Q ss_pred H
Q 012575 315 D 315 (460)
Q Consensus 315 ~ 315 (460)
+
T Consensus 145 ~ 145 (151)
T 3hcy_A 145 A 145 (151)
T ss_dssp H
T ss_pred H
Confidence 4
No 30
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=98.99 E-value=2.1e-09 Score=99.82 Aligned_cols=77 Identities=16% Similarity=0.183 Sum_probs=59.3
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccccccHHHHHHHH
Q 012575 347 FRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREV 426 (460)
Q Consensus 347 f~~~iSHELRtPLt~I~g~~~lL~~~~~~~~~~~~l~~I~~~~~rl~~LI~~LL~~sr~e~g~~~l~~~~~~L~~li~~v 426 (460)
++++|||||||||++|.|++++|.+...++..+++++.|.++++++.+++ +++|+..+. ....+++++.++.+.+
T Consensus 49 las~IaHELrtPL~~I~~~~elL~~~~~~~~~~~~l~~I~~~~~~~~~ll----~~~r~~~~~-~~~~~~~~~~~l~~~~ 123 (247)
T 4fpp_A 49 LAARLCHDFISPASAIVSGLDLLEDPSAQDMRDDAMNLIASSARKLADLL----QFTRVAFGA-SASAENFDSRELEKLA 123 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCGGGHHHHHHHHHHHHHHHHHHH----HHHHHHTTC-CSSCCCEEHHHHHHHH
T ss_pred HHhccCHHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHH----HHHHHhhcc-ccccccccHHHHHHHH
Confidence 78899999999999999999999887777777889999999998877655 556654443 3345678887765443
Q ss_pred HH
Q 012575 427 II 428 (460)
Q Consensus 427 ~~ 428 (460)
..
T Consensus 124 ~~ 125 (247)
T 4fpp_A 124 QG 125 (247)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 31
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=98.98 E-value=1.5e-09 Score=105.60 Aligned_cols=98 Identities=20% Similarity=0.248 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccccccHH
Q 012575 342 HARNDFRAVMNHEMRTLMHAIIALSSLLLETD-LTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQ 420 (460)
Q Consensus 342 ~~k~~f~~~iSHELRtPLt~I~g~~~lL~~~~-~~~~~~~~l~~I~~~~~rl~~LI~~LL~~sr~e~g~~~l~~~~~~L~ 420 (460)
+.+++|++.++||+||||++|.++++++.+.. .+++.+++++.|.++++++.++++++++++|. ...+..+++++.
T Consensus 130 ~~~~~~~~~i~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~---~~~~~~~~~~l~ 206 (349)
T 3a0r_A 130 SILGEMTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKE---RQVLEFTEFNLN 206 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHC---C-CEEEEEEEHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---ccccCCcccCHH
Confidence 45678999999999999999999999998653 33445789999999999999999999999994 345678899999
Q ss_pred HHHHHHHHHHhhhc---ccceEeec
Q 012575 421 IVLREVIIFSSVLQ---NFTYRVGT 442 (460)
Q Consensus 421 ~li~~v~~~~~~~a---~~~~~l~~ 442 (460)
+++++++..+.+.+ ++.+.++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~i~~~~~~ 231 (349)
T 3a0r_A 207 ELIREVYVLFEEKIRKMNIDFCFET 231 (349)
T ss_dssp HHHHHHHHHHHHHHTTTTCCCEEEE
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEec
Confidence 99999999888775 34444443
No 32
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}
Probab=98.98 E-value=1.5e-09 Score=95.66 Aligned_cols=154 Identities=12% Similarity=0.169 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHHhcc-cHHHHHHHHHHHhhhhcCCceeEEeccCCCCC--ceEEEEe---ecCC-------ccCCccc
Q 012575 141 ETGRHVRMLTHEIRSTL-DRHTILKTTLVELGRTLGLEECALWMPSRTGL--NLELSYT---LNNQ-------IQIGSSV 207 (460)
Q Consensus 141 e~~~~l~~lt~~I~~sl-d~~~il~~~~~~l~~~l~~~~~~i~~~~~~~~--~~~~~~~---~~~~-------~~~~~~~ 207 (460)
++.+.+.++++.|.+++ |++++++.+++.+.+.+++++|.+++.++++. .+..... .+.. ......+
T Consensus 4 ~el~~L~eis~~l~~~~~dl~~ll~~il~~~~~~~~a~~~~i~L~d~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~ 83 (180)
T 3dba_A 4 EECNILFELLTEIQDEAGSMEKIVHKTLQRLSQLLAADRCSMFICRSRNGIPEVATRLLNVTPTSKFEDNLVNPDKETVF 83 (180)
T ss_dssp HHHHHHHHHHTTSCSSSSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEETTEEEEEEEEEEECTTCCHHHHBCCGGGCCEE
T ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHhCcceEEEEEEeCCCCcceeeeeeeccccCccchhhccccccceee
Confidence 34567899999999999 99999999999999999999999999988754 3322211 1211 1123356
Q ss_pred ccCChhHHHHhhccCceeecCCCchhhhhhcccC-CCCCcceEEEeeccccCCccccCCCcccCCceeEEEEEeeCCCC-
Q 012575 208 PINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGR-YVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGG- 285 (460)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~pl~~~~~~~~~~~~~l~~g~~~~~v~~~~~~~~- 285 (460)
|.+.+....+..+++++.+++...+.++...... .....++.+++||... +..+||+.+.+..+
T Consensus 84 ~~~~gi~g~v~~tg~~v~i~d~~~d~~f~~~~~~~~~~~~~S~L~vPl~~~--------------~~viGVL~l~n~~~~ 149 (180)
T 3dba_A 84 PLDIGIAGWVAHTKKFFNIPDVKKNNHFSDYLDKKTGYTTVNMMAIPITQG--------------KEVLAVVMALNKLNA 149 (180)
T ss_dssp CTTSSHHHHHHHHTCCEEESCGGGCTTCCCHHHHHHCCCCCCEEEEEEEET--------------TEEEEEEEEEEESSS
T ss_pred eCCCCHHHHHHHhCCEEEecCCCCCcccChhhccccCccccEEEEEEeccC--------------CEEEEEEEEEeCCCC
Confidence 7788899999999999999987766544321110 1123467788887433 44688888876654
Q ss_pred CcccccHHHHHHHHHHHHHHHHH
Q 012575 286 RKWRDHELELIDVVADQVAVALS 308 (460)
Q Consensus 286 ~~~~~~e~~ll~~ia~~~a~ai~ 308 (460)
..|++++.++++.+|.++|++|.
T Consensus 150 ~~Ft~~d~~lL~~lA~~aa~~i~ 172 (180)
T 3dba_A 150 SEFSKEDEEVFKKYLNFISLVLR 172 (180)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHh
Confidence 48999999999999999999884
No 33
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=98.97 E-value=7.8e-10 Score=101.92 Aligned_cols=99 Identities=17% Similarity=0.249 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccccccHH
Q 012575 342 HARNDFRAVMNHEMRTLMHAIIALSSLLLETDLT-PEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQ 420 (460)
Q Consensus 342 ~~k~~f~~~iSHELRtPLt~I~g~~~lL~~~~~~-~~~~~~l~~I~~~~~rl~~LI~~LL~~sr~e~g~~~l~~~~~~L~ 420 (460)
+.+++|++.++|||||||++|.++++++.+...+ ++.+++++.+.++++++.+++++++++++.+.+ ..+++++.
T Consensus 12 ~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~----~~~~~~l~ 87 (244)
T 3d36_A 12 EAVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLTFAKPAPE----TPEKLNVK 87 (244)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCC----CCEEEEHH
T ss_pred HHHHHHHHHhhHHhccHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----CcchhhHH
Confidence 5677999999999999999999999999876544 456789999999999999999999999997654 46789999
Q ss_pred HHHHHHHHHHhhhc-ccceEeecCC
Q 012575 421 IVLREVIIFSSVLQ-NFTYRVGTKL 444 (460)
Q Consensus 421 ~li~~v~~~~~~~a-~~~~~l~~~~ 444 (460)
+++++++..+.+.+ ...+.+..+.
T Consensus 88 ~~l~~~~~~~~~~~~~~~i~~~~~~ 112 (244)
T 3d36_A 88 LEIERVIDILRPLANMSCVDIQATL 112 (244)
T ss_dssp HHHHHHHHHHHHHHTTTTEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhcCeEEeccC
Confidence 99999999888876 3445555443
No 34
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=98.95 E-value=5.4e-08 Score=96.59 Aligned_cols=166 Identities=14% Similarity=0.146 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHH----hhhhcCCceeEEeccCCCCCceEEEEeecCC-ccCCcccccCChhHH
Q 012575 141 ETGRHVRMLTHEIRSTLDRHTILKTTLVE----LGRTLGLEECALWMPSRTGLNLELSYTLNNQ-IQIGSSVPINLPIVT 215 (460)
Q Consensus 141 e~~~~l~~lt~~I~~sld~~~il~~~~~~----l~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 215 (460)
+..+.+.++.+.+.+ .|++.+++.+++. +.+.+++++|.||+.++++..+......+.. ...+..+|.+.+...
T Consensus 6 ~~l~~l~~~~~~l~~-~~l~~~l~~~l~~i~~~~~~~~~a~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~g~~g 84 (398)
T 1ykd_A 6 QKLQIVHQTLSMLDS-HGFENILQEMLQSITLKTGELLGADRTTIFLLDEEKQELWSIVAAGEGDRSLEIRIPADKGIAG 84 (398)
T ss_dssp HHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEEEECCGGGCCCCCEEETTSHHHH
T ss_pred HHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhCCceEEEEEEECCCCeEEEEeecCCCCccceeecCCCCchhh
Confidence 344556667766744 8888766655554 8999999999999999988766655554432 122345677888999
Q ss_pred HHhhccCceeecCCCch---hhhhhccc-CCCCCcceEEEeeccccCCccccCCCcccCCceeEEEEEeeCC--------
Q 012575 216 DVFNSAQAMRLPYNCPL---ARIRLLVG-RYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD-------- 283 (460)
Q Consensus 216 ~~~~~~~~~~l~~~~~~---~~~~~~~~-~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~g~~~~~v~~~~~~-------- 283 (460)
.++.+++++.+++...+ ..+..... ....+....+.+|+... ++..+|++.+.+.
T Consensus 85 ~v~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~-------------~g~~iGvl~l~~~~~~~~~~~ 151 (398)
T 1ykd_A 85 EVATFKQVVNIPFDFYHDPRSIFAQKQEKITGYRTYTMLALPLLSE-------------QGRLVAVVQLLNKLKPYSPPD 151 (398)
T ss_dssp HHHHHCCCEEECSCGGGSGGGHHHHHHHHHHCCCCSCEEEEEEECS-------------SCCEEEEEEEEEEBCSCCCTT
T ss_pred hhhccCcEEeccchhcccchhhcccccCcccCcCCceEEEEEEECC-------------CCCEEEEEEEeccCCcccccc
Confidence 99999999999887654 33321111 11223456777777432 2335777777655
Q ss_pred -------CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012575 284 -------GGRKWRDHELELIDVVADQVAVALSHAAILEDSMRAR 320 (460)
Q Consensus 284 -------~~~~~~~~e~~ll~~ia~~~a~ai~~a~l~~~~~~~~ 320 (460)
.++.|++++.+++..++.++++++++++++++.++.+
T Consensus 152 ~~l~~~~~~~~f~~~d~~~l~~~a~~~~~al~~~~l~~~~~~~~ 195 (398)
T 1ykd_A 152 ALLAERIDNQGFTSADEQLFQEFAPSIRLILESSRSFYIATQKQ 195 (398)
T ss_dssp CCHHHHBCTTCCCHHHHHHGGGTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999987755444
No 35
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=98.95 E-value=5.6e-09 Score=111.47 Aligned_cols=165 Identities=15% Similarity=0.174 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhhhhcCCceeEEeccCCCCCceEEEEeecCCccCCcccccCChhHHHHhhc
Q 012575 141 ETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNS 220 (460)
Q Consensus 141 e~~~~l~~lt~~I~~sld~~~il~~~~~~l~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (460)
++.+.+.++++.|+ ++|++++++++++.+.+.+|+++|.||+.++++..+......+........+|.+ +.++.++.+
T Consensus 12 e~~~~L~~i~~~ls-~ldl~~ll~~il~~l~~~l~ad~~~i~L~d~~~~~l~~~~~~g~~~~~~~~~p~~-Gi~g~v~~~ 89 (691)
T 3ibj_A 12 DRDRKILQLCGELY-DLDASSLQLKVLQYLQQETRASRCCLLLVSEDNLQLSCKVIGDKVLGEEVSFPLT-GCLGQVVED 89 (691)
T ss_dssp THHHHHHHHHHHCC-CSSHHHHHHHHHHHHHHHTTBSCEEEEEECTTSSEEEEEEETTEEEEEEEEEECC-SSSHHHHHH
T ss_pred HHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCeEEEEecCCCccccceecCCc-cHHHHHHHH
Confidence 44567999999999 9999999999999999999999999999999877665443333211122345667 899999999
Q ss_pred cCceeecCCCchhhhhhcccCCCCCcceEEEeeccccCCccccCCCcccCCceeEEEEEeeCC-CCCcccccHHHHHHHH
Q 012575 221 AQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD-GGRKWRDHELELIDVV 299 (460)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~g~~~~~v~~~~~~-~~~~~~~~e~~ll~~i 299 (460)
++++.+++...+...... .....+.++.+++|+... .++..+||+.+... +++.|++++.+++..+
T Consensus 90 ~~pv~i~d~~~~~~~~~~-~~~~~~~~S~L~vPI~~~------------~~g~viGvL~l~~~~~~~~ft~~d~~lL~~l 156 (691)
T 3ibj_A 90 KKSIQLKDLTSEDVQQLQ-SMLGCELQAMLCVPVISR------------ATDQVVALACAFNKLEGDLFTDEDEHVIQHC 156 (691)
T ss_dssp CCCEEGGGSCHHHHHHHH-HHHTSCCSCEEEEEEECS------------SSCSEEEEEEEESBSSSCCCCTTHHHHHHHH
T ss_pred CCeEEeccchhccccccc-cccCCccceEEEEEeEcC------------CCCcEEEEEEEEcCCCCCCCCHHHHHHHHHH
Confidence 999999888765433211 111123466777776432 11345788886544 5568999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012575 300 ADQVAVALSHAAILEDSMRAR 320 (460)
Q Consensus 300 a~~~a~ai~~a~l~~~~~~~~ 320 (460)
+.+++.++.+++.+++.++.+
T Consensus 157 a~~~a~al~~a~l~~~~~~~~ 177 (691)
T 3ibj_A 157 FHYTSTVLTSTLAFQKEQKLK 177 (691)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887655443
No 36
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV}
Probab=98.93 E-value=3.5e-08 Score=83.32 Aligned_cols=147 Identities=12% Similarity=0.024 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhhhcCCceeEEeccCCCCCceEEEEeecCCc-cCCcccccCChhHHH
Q 012575 138 TQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQI-QIGSSVPINLPIVTD 216 (460)
Q Consensus 138 ~~~e~~~~l~~lt~~I~~sld~~~il~~~~~~l~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 216 (460)
.+..+.+.+-++++.| ++++.++++..++...++.+++|+|.+|++++++. +......++.. ..+...
T Consensus 9 ~ra~rLrlL~e~~~~L-~~l~~~~~l~~il~~a~~~~~~d~gsL~l~d~~~~-l~~~aa~G~~~~l~~lr~--------- 77 (160)
T 3cit_A 9 SRAARLRLLVDTGQEL-IQLPPEAMRKCVLQRACAFVAMDHGLLLEWGADNG-VQTTARHGSKERLSTLET--------- 77 (160)
T ss_dssp HHHHHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHTTCSEEEEEECC--CC-CEEEEEESCHHHHTTSCC---------
T ss_pred HHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhccCeeEEEEEcCCCc-eeeeeccCchhhhhhhhc---------
Confidence 4566788899999999 88888999999999999999999999999998643 34444443210 000000
Q ss_pred HhhccCceeecCCCch-hhhhhcccCCCCCcceEEEeeccccCCccccCCCcccCCceeEEEEEe-eCCCCCcccccHHH
Q 012575 217 VFNSAQAMRLPYNCPL-ARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLML-PTDGGRKWRDHELE 294 (460)
Q Consensus 217 ~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~g~~~~~v~~~-~~~~~~~~~~~e~~ 294 (460)
+.+.... .++.. ......++.+++||... .| ..+|++.+ +..+...|+++|.+
T Consensus 78 ---------~~~~~~~gpr~~~---~tg~~t~svl~vPL~~~------------~g-~~~Gvlql~N~~~~~~f~~eD~e 132 (160)
T 3cit_A 78 ---------TADPLAIGPQWLE---RPGTHLPCVLLLPLRGA------------DE-GSFGTLVLANSVAISAPDGEDIE 132 (160)
T ss_dssp ---------CCCTTCCSCEEEE---CTTSSSCEEEEEEEECS------------SS-SEEEEEEEEESSCCCCCCHHHHH
T ss_pred ---------ccccccccccccc---ccCcccceeEEEeeecC------------CC-cEEEEEEEeccCCCCCCCHHHHH
Confidence 0000000 11110 11122356677776322 22 34666655 55566689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012575 295 LIDVVADQVAVALSHAAILEDSMRAR 320 (460)
Q Consensus 295 ll~~ia~~~a~ai~~a~l~~~~~~~~ 320 (460)
.++.+|.++|.+++|++++++.+.++
T Consensus 133 ~l~lLA~~~a~aien~rL~~~L~~re 158 (160)
T 3cit_A 133 SLQLLATLLAAHLENNRLLEALVARD 158 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998866543
No 37
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A*
Probab=98.87 E-value=1.2e-08 Score=88.78 Aligned_cols=141 Identities=19% Similarity=0.236 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHhhhhcCCceeEEeccCCCCCceEEEEeecCC---ccCCcccccC-Ch-hHHHHhhcc------------
Q 012575 159 RHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ---IQIGSSVPIN-LP-IVTDVFNSA------------ 221 (460)
Q Consensus 159 ~~~il~~~~~~l~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~-~~~~~~~~~------------ 221 (460)
++++++++++++.+.+++|||.||++++++......+....+ ...+..+|.. .| ........+
T Consensus 1 l~~il~~~~~~~~~~l~~dr~~i~~~~~~~~~~~~~e~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~i~d~~~~~ 80 (172)
T 2k2n_A 1 LDQILRATVEEVRAFLGTDRVKVYRFDPEGHGTVVAEARGGERLPSLLGLTFPAGDIPEEARRLFRLAQVRVIVDVEAQS 80 (172)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEEECCTTSCCEEEEEEESSTTSCCCTTCBCCTTCSCSHHHHHHHHTCCEECCCGGGCC
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEEECCCCCEEEEEEEecCCCCccccCCccCcccCcHHHHHHHHhCCeEEEeeccccc
Confidence 368999999999999999999999999987665555554432 1122233331 11 122222222
Q ss_pred ------------CceeecCCCchhhhhh-cccCCCCCcceEEEeeccccCCccccCCCcccCCceeEEEEEeeCCCCCcc
Q 012575 222 ------------QAMRLPYNCPLARIRL-LVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKW 288 (460)
Q Consensus 222 ------------~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~g~~~~~v~~~~~~~~~~~ 288 (460)
+++.+++......... .......+.++.+.+|+.. ++..+|++.+.+..++.|
T Consensus 81 ~g~v~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vPi~~--------------~~~l~G~l~~~~~~~~~~ 146 (172)
T 2k2n_A 81 RSISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVPLMH--------------HQELWGLLVSHHAEPRPY 146 (172)
T ss_dssp CCCSCCCSCCCSSCCCCCSSSSCCCCHHHHHHHHTTTCSEEEECCCSC--------------SSCCCEEEEEEECSCCCC
T ss_pred cccccccccccCCceeccchhhcCCCHHHHHHHHhcCCeEEEEEEEEE--------------CCEEEEEEEEEeCCCCCC
Confidence 2222222211100000 0000012345555555533 233466776666688999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHH
Q 012575 289 RDHELELIDVVADQVAVALSHAAIL 313 (460)
Q Consensus 289 ~~~e~~ll~~ia~~~a~ai~~a~l~ 313 (460)
+++|.+++..+|.++++|++++++|
T Consensus 147 ~~~e~~~l~~la~~~a~ai~~a~L~ 171 (172)
T 2k2n_A 147 SQEELQVVQLLADQVSIAIAQAELS 171 (172)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999886
No 38
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=98.86 E-value=3.8e-09 Score=105.10 Aligned_cols=95 Identities=7% Similarity=-0.024 Sum_probs=73.3
Q ss_pred HHHHHHHHHhHh-----HHHHHHHHHHHHhcCCCCHH----HHHHHH--HHHHHHHHHHHHHHHHHHHhhhhc-CCcccc
Q 012575 346 DFRAVMNHEMRT-----LMHAIIALSSLLLETDLTPE----QRVMIE--TVLKSSNLLTTLVDDVLDLSRLED-GSLELD 413 (460)
Q Consensus 346 ~f~~~iSHELRt-----PLt~I~g~~~lL~~~~~~~~----~~~~l~--~I~~~~~rl~~LI~~LL~~sr~e~-g~~~l~ 413 (460)
+|+++++||||| ||+.|.|+++++.+...++. .+++++ .|.+++.|| +|+++|+++|.+. +.....
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~ll~l~~~~~~~~~~~~ 174 (394)
T 2btz_A 97 SQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRM--LINQHTLIFDGSTNPAHPKH 174 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCC--------CC
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHhhhHHHH--HHHHHHHHhcccccCCCCcc
Confidence 488889999999 99999999999876544433 345888 488999999 9999999999988 577777
Q ss_pred c----ccccHHHHHHHHHHHHhhhcc------cceEeec
Q 012575 414 N----GPFNLQIVLREVIIFSSVLQN------FTYRVGT 442 (460)
Q Consensus 414 ~----~~~~L~~li~~v~~~~~~~a~------~~~~l~~ 442 (460)
. +++|+.+++++++..+++.+. .++.++.
T Consensus 175 ~g~i~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~ 213 (394)
T 2btz_A 175 IGSIDPNCNVSEVVKDAYDMAKLLCDKYYMASPDLEIQE 213 (394)
T ss_dssp BTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEE
T ss_pred cceecCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEEE
Confidence 7 899999999999999988863 5666664
No 39
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=98.83 E-value=2e-08 Score=80.57 Aligned_cols=68 Identities=16% Similarity=0.270 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012575 331 DSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLS 403 (460)
Q Consensus 331 ~~~~~~l~~~~~~k~~f~~~iSHELRtPLt~I~g~~~lL~~~~~~~~~~~~l~~I~~~~~rl~~LI~~LL~~s 403 (460)
....+++++..+.+.+|++.+|||+||||+.|.++++.+.+. ..+..+.|.+++++|..+|+++++|.
T Consensus 47 n~m~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~e~l~~~-----~~~~~~~i~~~~~~l~~~i~~ll~~~ 114 (114)
T 3zcc_A 47 ERLRRSLKQLADDGTLLMAGVSHDLRTPLTRIRLATEMMSEQ-----DGYLAESINKDIEECNAIIEQFIDYL 114 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGG-----GHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHcChHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 333444455556677899999999999999999999988642 34456999999999999999999873
No 40
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1
Probab=98.80 E-value=1.4e-07 Score=83.62 Aligned_cols=152 Identities=13% Similarity=0.071 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhhhc-CCceeEEeccCCCCCceEEEEeecCCccCCcccccCChhHHHHh
Q 012575 140 EETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTL-GLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVF 218 (460)
Q Consensus 140 ~e~~~~l~~lt~~I~~sld~~~il~~~~~~l~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (460)
+.....+.+++..+..+.|+++.+..++..+.+.+ ++++|.+|+.+++ .+......+. +....++.+.+....+.
T Consensus 25 ~~~~~ll~~l~~ll~~~~dl~~~L~~v~~ll~~~l~~~~~~~iyL~d~~--~L~l~~~~G~--~~~~~i~~GeGi~G~aa 100 (195)
T 1vhm_A 25 EFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDD--TLVLGPFQGK--IACVRIPVGRGVCGTAV 100 (195)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSSSCSEEEEEEEETT--EEEEEEEEES--CCCSEEETTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCCCCCEEEEEEEECC--EEEEEEecCc--ccceEecCCCChHHHHH
Confidence 33456788899999999999999999999999999 9999999998874 4444444433 33556778899999999
Q ss_pred hccCceeecCCCchhhhhhcccCCCCCcceEEEeeccccCCccccCCCcccCCceeEEEEEeeCCCCCcccccHHHHHHH
Q 012575 219 NSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDV 298 (460)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~g~~~~~v~~~~~~~~~~~~~~e~~ll~~ 298 (460)
.+++++.+++...+..+. ....+.++.+.+|+.. ++..+||+.+.+..++.|++++.++++.
T Consensus 101 ~tg~~i~V~Dv~~~p~~~----~~~~~~~S~l~VPI~~--------------~g~viGVL~i~s~~~~~F~e~d~~~L~~ 162 (195)
T 1vhm_A 101 ARNQVQRIEDVHVFDGHI----ACDAASNSEIVLPLVV--------------KNQIIGVLDIDSTVFGRFTDEDEQGLRQ 162 (195)
T ss_dssp HHTSCEEESCTTTCTTCC----CSCCCCSEEEEEEEEE--------------TTEEEEEEEEEESSTTCCCHHHHHHHHH
T ss_pred hcCCEEEECCcccCcchh----hcCCCccEEEEEeEeE--------------CCEEEEEEEecCCCCCCCCHHHHHHHHH
Confidence 999999999887643321 1233457788888743 3446899999888778999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 012575 299 VADQVAVALSHAAIL 313 (460)
Q Consensus 299 ia~~~a~ai~~a~l~ 313 (460)
+|.+++.+++++...
T Consensus 163 lA~~ia~ale~a~~~ 177 (195)
T 1vhm_A 163 LVAQLEKVLATTDYK 177 (195)
T ss_dssp HHHHHHHHHHTSSGG
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999877643
No 41
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=98.78 E-value=1.9e-08 Score=100.35 Aligned_cols=87 Identities=11% Similarity=0.059 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhHh-----HHHHHHHHHHHHhcCCCC----HHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhhc----C-
Q 012575 345 NDFRAVMNHEMRT-----LMHAIIALSSLLLETDLT----PEQRVMIET--VLKSSNLLTTLVDDVLDLSRLED----G- 408 (460)
Q Consensus 345 ~~f~~~iSHELRt-----PLt~I~g~~~lL~~~~~~----~~~~~~l~~--I~~~~~rl~~LI~~LL~~sr~e~----g- 408 (460)
..|.+.+ ||||| ||+.|.|+++++.....+ ++.+++++. +.+.+.|| +|+++|+++|.+. |
T Consensus 107 ~~f~~~~-HeLrt~~~~vPLt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~~~~~~~rl--li~~ll~l~~~e~~~~~~~ 183 (407)
T 2q8g_A 107 YDFTDTV-IRIRNRHNDVIPTMAQGVIEYKESFGVDPVTSQNVQYFLDRFYMSRISIRM--LLNQHSLLFGGKGKGSPSH 183 (407)
T ss_dssp HHHHHHH-HHHHHHTTTHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHC---------
T ss_pred HHHHHHH-HHHHhhhccchHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhccccccCCCC
Confidence 4555555 99999 999999999977754322 334678888 88889999 9999999999976 3
Q ss_pred --CcccccccccHHHHHHHHHHHHhhhc
Q 012575 409 --SLELDNGPFNLQIVLREVIIFSSVLQ 434 (460)
Q Consensus 409 --~~~l~~~~~~L~~li~~v~~~~~~~a 434 (460)
...+..+++|+.+++++++..+++.+
T Consensus 184 ~~~~~~~~~~~~l~~li~~~~~~~~~~~ 211 (407)
T 2q8g_A 184 RKHIGSINPNCNVLEVIKDGYENARRLC 211 (407)
T ss_dssp -CCBTTBEEEEEHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 56678899999999999999998886
No 42
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=98.76 E-value=3.2e-08 Score=98.32 Aligned_cols=94 Identities=7% Similarity=0.034 Sum_probs=76.9
Q ss_pred HHHHHHHHHhHh-----HHHHHHHHHHHHhcCC----CCHHHHHHHH--HHHHHHHHHHHHHHHHHH-HhhhhcCCcccc
Q 012575 346 DFRAVMNHEMRT-----LMHAIIALSSLLLETD----LTPEQRVMIE--TVLKSSNLLTTLVDDVLD-LSRLEDGSLELD 413 (460)
Q Consensus 346 ~f~~~iSHELRt-----PLt~I~g~~~lL~~~~----~~~~~~~~l~--~I~~~~~rl~~LI~~LL~-~sr~e~g~~~l~ 413 (460)
+|+++++||||| ||+.|.|+++++.+.. ..++.+++++ .|.+.+.|| +|+++|+ +++. .+.....
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~el~~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~lL~l~~~~-~~~~~~~ 173 (394)
T 2e0a_A 97 SDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRM--LMNQHILIFSDS-QTGNPSH 173 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCSS-CCCCTTS
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhcc-cCCCCCc
Confidence 477788899999 9999999999776432 3455678999 799999999 9999999 7776 6777777
Q ss_pred c----ccccHHHHHHHHHHHHhhhc-cc-----ceEeec
Q 012575 414 N----GPFNLQIVLREVIIFSSVLQ-NF-----TYRVGT 442 (460)
Q Consensus 414 ~----~~~~L~~li~~v~~~~~~~a-~~-----~~~l~~ 442 (460)
. +++|+.+++++++..+++.+ .. ++.++.
T Consensus 174 ~g~i~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~i~l~~ 212 (394)
T 2e0a_A 174 IGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQ 212 (394)
T ss_dssp BTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEE
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 7 89999999999999998886 33 566655
No 43
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=98.65 E-value=1.2e-07 Score=99.86 Aligned_cols=170 Identities=11% Similarity=0.042 Sum_probs=105.8
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhhhcCCceeEEeccCCCCCceEEEEeecCCcc--CCcccccCC-h-hHHHHhhc
Q 012575 145 HVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQ--IGSSVPINL-P-IVTDVFNS 220 (460)
Q Consensus 145 ~l~~lt~~I~~sld~~~il~~~~~~l~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~-~~~~~~~~ 220 (460)
.+..+.++|++++|+++|+++++.++.+.+|+||+.||.+++|+.+..+.+...+++. .|..+|..+ | ........
T Consensus 133 ~~~~~~~~i~~s~~l~~i~~~~v~evr~l~~~DRv~iy~F~~d~~G~vvaE~~~~~~~s~lg~~~p~~dip~~~r~ly~~ 212 (635)
T 4eho_A 133 TLAPALERIRTAGSLRALCDDTALLFQQCTGYDRVMVYRFDEQGHGEVFSERHVPGLESYFGNRYPSSDIPQMARRLYER 212 (635)
T ss_dssp TSSSHHHHHHHCCSHHHHHHHHHHHHHHHSCCSEEEEEEECTTCCEEEEEEECCTTCCCCTTCEECSTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCEEEEEEEcCCCCccccCCccCCcchHHHHHHHHHc
Confidence 3566777899999999999999999999999999999999999998888887776543 233344321 2 22333333
Q ss_pred cCceeecCCCch-hhh--------------hhcccCCCCCcceEEEeeccccCCccccCCCcccCCceeEEEEEeeCCCC
Q 012575 221 AQAMRLPYNCPL-ARI--------------RLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGG 285 (460)
Q Consensus 221 ~~~~~l~~~~~~-~~~--------------~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~g~~~~~v~~~~~~~~ 285 (460)
+....+.+.... ..+ .........+.+..| |..++-......|.+..|..++.+.++++ .+
T Consensus 213 ~~~r~i~d~~~~~v~~~~~~~~~~~~~ldl~~~~~r~~sp~h~~y---l~~~~v~asl~vpi~~~~~LWGLl~~h~~-~p 288 (635)
T 4eho_A 213 QRVRVLVDVSYQPVPLEPRLSPLTGRDLDMSGCFLRSMSPIHLQY---LKNMGVRATLVVSLVVGGKLWGLVACHHY-LP 288 (635)
T ss_dssp SCEEEESCSSCCCEEEESSBCTTTSSBCCGGGCTTBCCCHHHHHH---HHHHTCCEEEEEEEEETTEEEEEEEEEES-SC
T ss_pred CCeEEEecccCCccccccCcCcccCCccccccceecCCCHHHHHH---HHhhCcceEEEEEEEEcceeeeeeeeecC-CC
Confidence 333333332211 000 000000000000000 00001111123445566666777777665 58
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012575 286 RKWRDHELELIDVVADQVAVALSHAAILEDSMR 318 (460)
Q Consensus 286 ~~~~~~e~~ll~~ia~~~a~ai~~a~l~~~~~~ 318 (460)
+.|+.++..+++.++.++++++.++..+++.++
T Consensus 289 r~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~ 321 (635)
T 4eho_A 289 RFIHFELRAICELLAEAIATRITALESFAQSQS 321 (635)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHHHHhHHHhHHHHHH
Confidence 999999999999999999999998888766544
No 44
>3eea_A GAF domain/HD domain protein; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; HET: PG6; 1.80A {Geobacter sulfurreducens}
Probab=98.62 E-value=2.6e-07 Score=73.96 Aligned_cols=149 Identities=12% Similarity=0.199 Sum_probs=109.3
Q ss_pred HHHhcccHHHHHHHHHHHhhhhcCCceeEEeccCCCCCceEEEEeecCCcc---CC---cccccCChhHHHHhhccCcee
Q 012575 152 EIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQ---IG---SSVPINLPIVTDVFNSAQAMR 225 (460)
Q Consensus 152 ~I~~sld~~~il~~~~~~l~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~ 225 (460)
++..-.|.+++.+....-+.++.+..+.++|+.|.++..+....+++.+.. .- .-.|...|.++..++..+...
T Consensus 7 r~~~l~~vd~~~~~l~rll~k~~~~~w~~vy~~drerrdf~~~rs~~~pa~~l~~~r~mpl~p~k~pllk~~lr~~~hll 86 (162)
T 3eea_A 7 RLSGLTDVDEVIKDLSRLLRKLVKTRWIAVYFFDRERRDFAPARSTGLPASFLPVFREMPLAPDKIPLLKSMLRKRQHLM 86 (162)
T ss_dssp CGGGGCCHHHHHHHHHHHHHHHSCCSEEEEEEECC--CSEEEEEEESCCGGGHHHHHHCCBCTTTCHHHHHHHHHTCCEE
T ss_pred hHhccccHHHHHHHHHHHHHHHhCCceEEEEEeehhhhccccccccCCchhhhHHHhhCCCCCCccHHHHHHHHhcCccc
Confidence 455667999999999999999999999999999999999999888876421 11 123456788999999999888
Q ss_pred ecCCCchhhhhhcccCCCCCcceEEEeeccccCCccccCCCcccCCceeEEEEEeeCCCCC-cccccHHHHHHHHHHHHH
Q 012575 226 LPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGR-KWRDHELELIDVVADQVA 304 (460)
Q Consensus 226 l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~g~~~~~v~~~~~~~~~-~~~~~e~~ll~~ia~~~a 304 (460)
+.+.....-+... .+...++...+.+|| .-|+..+||+...+...+ .|+++|+.++..+|++.|
T Consensus 87 ~~dp~~s~l~tp~-l~k~~~~~~ILgVPL--------------~~g~qVIGVLFaArR~~R~~Fs~dEiALL~SLAahAA 151 (162)
T 3eea_A 87 LTDPGSSDLLTPK-LRKLLRNLCVLAVPM--------------VVRTQVIGAVFMARTRDNPPFSDAETAIIRDLVSHAA 151 (162)
T ss_dssp ESCGGGCTTSCHH-HHHHTTTEEEEEEEE--------------EETTEEEEEEEEEEETTSCCCCHHHHHHHHHHHHHHH
T ss_pred cCCCCcchhccHH-HHHHHhhCeEEEecc--------------eeCCEEEEEEEEecccccCCCCHHHHHHHHHHHHHHH
Confidence 7665432222111 111123344555554 455667999999888888 999999999999999999
Q ss_pred HHHHHHHHHHH
Q 012575 305 VALSHAAILED 315 (460)
Q Consensus 305 ~ai~~a~l~~~ 315 (460)
+|+++++++++
T Consensus 152 IAIdnArLldE 162 (162)
T 3eea_A 152 LVVSHMQLFDE 162 (162)
T ss_dssp HHHHHHHTC--
T ss_pred HHHHHhhhhcC
Confidence 99999998764
No 45
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=98.56 E-value=2.1e-07 Score=93.11 Aligned_cols=97 Identities=9% Similarity=0.053 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHhHhHHH-----HHHHHHHHHhcCCC----CHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhh-cCCc
Q 012575 343 ARNDFRAVMNHEMRTLMH-----AIIALSSLLLETDL----TPEQRVMIETVLKS--SNLLTTLVDDVLDLSRLE-DGSL 410 (460)
Q Consensus 343 ~k~~f~~~iSHELRtPLt-----~I~g~~~lL~~~~~----~~~~~~~l~~I~~~--~~rl~~LI~~LL~~sr~e-~g~~ 410 (460)
.+.+|.+ ++|||||||+ .|.|+++++..... +++.+++++.|..+ +.|+ +|+++|.+++.. .+..
T Consensus 117 ~~~~f~~-~~HeLrtPL~~vi~~~i~g~~ell~~~~~~~~~~~~~~~~l~~i~~~~~~~rl--li~~lL~l~~~~~~~~~ 193 (419)
T 1y8o_A 117 VLDNFLQ-VLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISFRM--LINQHTLLFGGDTNPVH 193 (419)
T ss_dssp HHHHHHH-HHHHHHHHGGGHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHSCCSSCSS
T ss_pred HHHHHHH-HHHHHhcchhhhHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcccccCCC
Confidence 3445665 5599999999 88999997765322 23456788887666 8888 999997766543 3433
Q ss_pred cc----ccccccHHHHHHHHHHHHhhhcc------cceEeec
Q 012575 411 EL----DNGPFNLQIVLREVIIFSSVLQN------FTYRVGT 442 (460)
Q Consensus 411 ~l----~~~~~~L~~li~~v~~~~~~~a~------~~~~l~~ 442 (460)
.. ..+++|+.+++++++..+++.+. .++.++.
T Consensus 194 ~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~i~~ 235 (419)
T 1y8o_A 194 PKHIGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEE 235 (419)
T ss_dssp TTSBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEE
T ss_pred CCccccccCcCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEe
Confidence 33 33899999999999999888762 4555554
No 46
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}
Probab=98.56 E-value=1.8e-06 Score=74.55 Aligned_cols=143 Identities=6% Similarity=-0.000 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHhhhhcC-CceeEEeccCCCCCceEEEEeecCCccCCcccccCChhHHHHhhcc
Q 012575 143 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLG-LEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSA 221 (460)
Q Consensus 143 ~~~l~~lt~~I~~sld~~~il~~~~~~l~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (460)
..++.++...+..+.|....+..++..+.+.++ +++|.+|+.+++ .+.+....+. +....++.+.+.+..+..++
T Consensus 17 ~~ll~~l~~ll~~~~dl~~~L~nv~~lL~~~l~~~~~~gfYL~~~~--~L~l~a~~G~--~a~~ri~~GeGv~G~va~tg 92 (171)
T 3rfb_A 17 QMLNEELSFLLEGETNVLANLSNASALIKSRFPNTVFAGFYLFDGK--ELVLGPFQGG--VSCIRIALGKGVCGEAAHFQ 92 (171)
T ss_dssp HHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHCTTEEEEEEEEECSS--EEEEEEEESS--SCCCEEETTSHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHccCCCEEEEEEEECC--EEEEEeccCC--ccceEeeCCcCHHHHHHhhC
Confidence 345667777788899999999999999999997 999999998764 4555555443 23457888999999999999
Q ss_pred CceeecCCCchhhhhhcccCCCCCcceEEEeeccccCCccccCCCcccCCceeEEEEEeeCCCCCcccccHHHHHHHHHH
Q 012575 222 QAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVAD 301 (460)
Q Consensus 222 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~g~~~~~v~~~~~~~~~~~~~~e~~ll~~ia~ 301 (460)
+++.+++......+- ......++.+.+|+.. ++..+||+.+.+..++.|+++|.++++.+|.
T Consensus 93 ~~i~V~Dv~~~p~~i----~~~~~~~Sei~VPI~~--------------~g~viGVL~i~s~~~~~F~e~D~~~L~~lA~ 154 (171)
T 3rfb_A 93 ETVIVGDVTTYLNYI----SCDSLAKSEIVVPMMK--------------NGQLLGVLDLDSSEIEDYDAMDRDYLEQFVA 154 (171)
T ss_dssp SCEEESCTTSCSSCC----CSCTTCCEEEEEEEEE--------------TTEEEEEEEEEESSTTCCCHHHHHHHHHHHH
T ss_pred CEEEECCcccCcccc----ccCcccCceEEEEEEE--------------CCEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 999999887654431 1223456778888743 3446999999988888999999999999999
Q ss_pred HHHHHH
Q 012575 302 QVAVAL 307 (460)
Q Consensus 302 ~~a~ai 307 (460)
+++.++
T Consensus 155 ~la~~~ 160 (171)
T 3rfb_A 155 ILLEKT 160 (171)
T ss_dssp HHHHSC
T ss_pred HHHHHh
Confidence 997654
No 47
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*
Probab=98.55 E-value=2.6e-06 Score=74.68 Aligned_cols=145 Identities=6% Similarity=0.012 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhhhhc-----CCceeEEeccCCCC-CceEEEEeecCCccCCcccccCChhHHHH
Q 012575 144 RHVRMLTHEIRSTLDRHTILKTTLVELGRTL-----GLEECALWMPSRTG-LNLELSYTLNNQIQIGSSVPINLPIVTDV 217 (460)
Q Consensus 144 ~~l~~lt~~I~~sld~~~il~~~~~~l~~~l-----~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (460)
..+.++...+..+.|..+.+..++..+.+.+ ++++|.+|+.++++ ..+......+. .....++.+.+....+
T Consensus 27 ~ll~~l~~ll~~~~dl~~~L~~v~~~l~~~l~~~~~~~~~~~~yl~d~~~~~~L~l~~~~g~--~~~~~i~~g~Gi~G~a 104 (180)
T 1f5m_A 27 QLLLSYEGLSDGQVNWVCNLSNASSLIWHAYKSLAVDINWAGFYVTQASEENTLILGPFQGK--VACQMIQFGKGVCGTA 104 (180)
T ss_dssp HHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECSSSSCEEEEEEEEES--CCCSEEETTSHHHHHH
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhhccCCccEEEEEEEecCCCCeEEEeecCCC--ccceeecCCCcchhhh
Confidence 4577778888889999999999999999999 99999999998764 45554433322 2245677788999999
Q ss_pred hhccCceeecCCCchhhhhhcccCCCCCcceEEEeeccccCCccccCCCcccCCceeEEEEEeeCCCCCcccccHHHHHH
Q 012575 218 FNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELID 297 (460)
Q Consensus 218 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~g~~~~~v~~~~~~~~~~~~~~e~~ll~ 297 (460)
..+++++.+++...+.++. ....+.++.+.+|+.. .++..+||+.+.+..++.|++++.++++
T Consensus 105 a~~g~~v~v~Dv~~dp~~~----~~~~~~~S~l~vPi~~-------------~~g~viGVL~l~s~~~~~F~~~d~~~L~ 167 (180)
T 1f5m_A 105 ASTKETQIVPDVNKYPGHI----ACDGETKSEIVVPIIS-------------NDGKTLGVIDIDCLDYEGFDHVDKEFLE 167 (180)
T ss_dssp HHHTSCEEESCGGGSTTCC----CSSTTCCEEEEEEEEC-------------TTSCEEEEEEEEESSTTCCCHHHHHHHH
T ss_pred hhcCCEEEeCCcccCcccc----ccCcccceEEEEEEEc-------------CCCeEEEEEEeccCCCCCcCHHHHHHHH
Confidence 9999999998877654433 1223457778888743 1344689999988878899999999999
Q ss_pred HHHHHHHHHH
Q 012575 298 VVADQVAVAL 307 (460)
Q Consensus 298 ~ia~~~a~ai 307 (460)
.+|.+++.++
T Consensus 168 ~la~~~a~~~ 177 (180)
T 1f5m_A 168 KLAKLINKSC 177 (180)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhc
Confidence 9999998764
No 48
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*
Probab=98.50 E-value=2.5e-06 Score=72.90 Aligned_cols=141 Identities=11% Similarity=0.124 Sum_probs=109.8
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhhhcC-CceeEEeccCCCCCceEEEEeecCCccCCcccccCChhHHHHhhccCc
Q 012575 145 HVRMLTHEIRSTLDRHTILKTTLVELGRTLG-LEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQA 223 (460)
Q Consensus 145 ~l~~lt~~I~~sld~~~il~~~~~~l~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (460)
++.++...+....|+...+..++..+.+.++ +++|.+|+.+++ .+.+....+.. ....++.+.+.+..+..++++
T Consensus 18 ll~~l~~ll~~~~dl~~~L~~v~~ll~~~l~~~~~~gfYL~~~~--~L~l~~~~G~~--a~~ri~~GeGv~G~aa~~~~~ 93 (160)
T 3ksh_A 18 LKKQAASLIEDEHHMIAILSNMSALLNDNLDQINWVGFYLLEQN--ELILGPFQGHP--ACVHIPIGKGVCGTAVSERRT 93 (160)
T ss_dssp HHHHHHHTTTTCCCHHHHHHHHHHHHHHHCSSCSEEEEEEEETT--EEEEEEEEESC--CCSEEETTSHHHHHHHHHTSC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHcccCCEEEEEEEECC--EEEEEeccCCc--ccEEeeCCCCHHHHHHhhCCE
Confidence 4556666677889999999999999999997 999999998764 45555555432 345788899999999999999
Q ss_pred eeecCCCchhhhhhcccCCCCCcceEEEeeccccCCccccCCCcccCCceeEEEEEeeCCCCCcccccHHHHHHHHHHHH
Q 012575 224 MRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQV 303 (460)
Q Consensus 224 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~g~~~~~v~~~~~~~~~~~~~~e~~ll~~ia~~~ 303 (460)
+.+++......+-. .....++.+.+|+.. ++..+||+.+.+..++.|+++|.++++.+|.++
T Consensus 94 i~V~Dv~~~p~~i~----~~~~~~Sei~VPI~~--------------~g~viGVL~i~s~~~~~F~e~D~~~L~~lA~~l 155 (160)
T 3ksh_A 94 QVVADVHQFKGHIA----CDANSKSEIVVPIFK--------------DDKIIGVLDIDAPITDRFDDNDKEHLEAIVKII 155 (160)
T ss_dssp EEESCGGGSTTCCG----GGTTCSEEEEEEEEE--------------TTEEEEEEEEEESSSSCCCHHHHHHHHHHHHHH
T ss_pred EEECCcccCccccc----cCcccCceEEEEEEE--------------CCEEEEEEEEecCCCCCCCHHHHHHHHHHHHHH
Confidence 99998876544321 123456778888743 344699999998888899999999999999998
Q ss_pred HHHH
Q 012575 304 AVAL 307 (460)
Q Consensus 304 a~ai 307 (460)
+-.+
T Consensus 156 a~~~ 159 (160)
T 3ksh_A 156 EKQL 159 (160)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7554
No 49
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=98.43 E-value=2.5e-08 Score=109.13 Aligned_cols=172 Identities=11% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhhhcCCceeEEeccCCCCC--ceEE----EEeecC--C--ccCCccc
Q 012575 138 TQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGL--NLEL----SYTLNN--Q--IQIGSSV 207 (460)
Q Consensus 138 ~~~e~~~~l~~lt~~I~~sld~~~il~~~~~~l~~~l~~~~~~i~~~~~~~~--~~~~----~~~~~~--~--~~~~~~~ 207 (460)
++.++...+.++++.|.+++|++++++.+++.+.+.+++++|.||+.++++. .... ....+. . ...+..+
T Consensus 147 ~~~~~l~~L~eis~~L~~~ldl~~ll~~il~~l~~~l~ad~~~I~L~d~~~~~~~~lv~~~f~~~~G~~~~~~~~~~~~~ 226 (878)
T 3bjc_A 147 DEGDQCSRLLELVKDISSHLDVTALCHKIFLHIHGLISADRYSLFLVCEDSSNDKFLISRLFDVAEGSTLEEVSNNCIRL 226 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cchHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCCeEEEEEEeCCCCCceeEEeeecccccCccccccCCcceee
Confidence 4455667899999999999999999999999999999999999999998743 1111 111111 1 1223345
Q ss_pred ccCChhHHHHhhccCceeecCCCchhhhhhcccC-CCCCcceEEEeeccccCCccccCCCcccCCceeEEEEEeeCCCC-
Q 012575 208 PINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGR-YVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGG- 285 (460)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~pl~~~~~~~~~~~~~l~~g~~~~~v~~~~~~~~- 285 (460)
|.+.+....++.+++++.+++...+.++...... ...+....+.+|+ ..+++..+||+.+.+..+
T Consensus 227 p~~~gi~g~v~~~g~pv~I~D~~~dp~f~~~~~~~~~~~~~S~L~vPL-------------~~~~g~viGvL~l~~~~~~ 293 (878)
T 3bjc_A 227 EWNKGIVGHVAALGEPLNIKDAYEDPRFNAEVDQITGYKTQSILCMPI-------------KNHREEVVGVAQAINKKSG 293 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eCCccHHHHHHhcCceEEeCCcccCcccccccccccCCccceEEEEee-------------EcCCCCEEEEEEEEecCCC
Confidence 6667788899999999988876655443311110 0111233344443 332455678888776543
Q ss_pred --CcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012575 286 --RKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQ 322 (460)
Q Consensus 286 --~~~~~~e~~ll~~ia~~~a~ai~~a~l~~~~~~~~~~ 322 (460)
+.|++++.+++..++.++++++.+++++++.++.+++
T Consensus 294 ~~~~ft~~D~~lL~~lA~~~a~AL~na~l~e~~~~~~~~ 332 (878)
T 3bjc_A 294 NGGTFTEKDEKDFAAYLAFCGIVLHNAQLYETSLLENKR 332 (878)
T ss_dssp ---------------------------------------
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999999999999999999999876655443
No 50
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=98.40 E-value=1.3e-06 Score=69.70 Aligned_cols=64 Identities=17% Similarity=0.285 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012575 336 EAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSR 404 (460)
Q Consensus 336 ~l~~~~~~k~~f~~~iSHELRtPLt~I~g~~~lL~~~~~~~~~~~~l~~I~~~~~rl~~LI~~LL~~sr 404 (460)
++++..+.+.+|+..+|||+|||++.|.+.++.+.+. ..+..+.+.+.+.++..+++++++++|
T Consensus 52 ~l~~~~~~~~~~~~~~shel~~~l~~i~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~ 115 (115)
T 3zrx_A 52 SLKQLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQ-----DGYLAESINKDIEECNAIIEQFIDYLR 115 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGG-----GHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3333445577899999999999999999999987643 256788899999999999999998874
No 51
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=98.35 E-value=5.3e-08 Score=106.56 Aligned_cols=170 Identities=12% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH-hcccHHHHHHHHHHHhhhhcCCceeEEeccCCCCCceEEEEee--cCCc--------cCCcccc
Q 012575 140 EETGRHVRMLTHEIR-STLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTL--NNQI--------QIGSSVP 208 (460)
Q Consensus 140 ~e~~~~l~~lt~~I~-~sld~~~il~~~~~~l~~~l~~~~~~i~~~~~~~~~~~~~~~~--~~~~--------~~~~~~~ 208 (460)
.++...+.++++.|. .+.|++++++.++..+.+.+++++|.|++.++++..+...... .+.. ......|
T Consensus 330 ~~~~~~L~~ls~~L~~~s~dl~~ll~~I~~~a~~ll~a~~~~V~L~d~~~~~l~a~a~~~~s~~~~~~~~~~~~~~~~~p 409 (878)
T 3bjc_A 330 NKRNQVLLDLASLIFEEQQSLEVILKKIAATIISFMQVQKCTIFIVDEDCSDSFSSVFHMECEELEKSSDTLTREHDANK 409 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhCcceeEEEEEcCcccchhHHHhhccccccccccccccccccccc
Confidence 344555677888885 4589999999999999999999999999999877654332111 1110 0123455
Q ss_pred cCChhHHHHhhccCceeecCCCchhhhhhcccCCC----CCcceEEEeeccccCCccccCCCcccCC-ceeEEEEEeeCC
Q 012575 209 INLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYV----PPDIVAVRVPLLHLSNFQINDWPELPAK-SYAVMVLMLPTD 283 (460)
Q Consensus 209 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~pl~~~~~~~~~~~~~l~~g-~~~~~v~~~~~~ 283 (460)
.+.+....+..+++++.+++...+.++........ .+....+.+||.. .+ +..+||+.+.+.
T Consensus 410 ~~~gi~g~v~~~g~~v~i~D~~~d~r~~~~~~~~~g~~~~~~rS~L~vPL~~-------------~~~g~viGVL~l~~~ 476 (878)
T 3bjc_A 410 INYMYAQYVKNTMEPLNIPDVSKDKRFPWTTENTGNVNQQCIRSLLCTPIKN-------------GKKNKVIGVCQLVNK 476 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhHHHHHhhcCCeeeecCcccccccccccccccCccccccceEEEEEEec-------------CCCCcEEEEEEEEEc
Confidence 56667788888888888776655444331111100 1233444555432 21 345777777655
Q ss_pred CC------CcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012575 284 GG------RKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQ 322 (460)
Q Consensus 284 ~~------~~~~~~e~~ll~~ia~~~a~ai~~a~l~~~~~~~~~~ 322 (460)
.+ +.|++++.++++.+|.++|+||+|++++++.++..++
T Consensus 477 ~~~~~G~~~~Ft~~d~~lL~~lA~~aaiAIenarl~e~l~~~~~~ 521 (878)
T 3bjc_A 477 MEENTGKVKPFNRNDEQFLEAFVIFCGLGIQNTQMYEAVERAMAK 521 (878)
T ss_dssp ---------------------------------------------
T ss_pred CCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 6899999999999999999999999999988776544
No 52
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=97.87 E-value=9.2e-05 Score=66.39 Aligned_cols=90 Identities=8% Similarity=0.034 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccccccH
Q 012575 342 HARNDFRAVMNHEMRTLMHAIIALSSLLLET--DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNL 419 (460)
Q Consensus 342 ~~k~~f~~~iSHELRtPLt~I~g~~~lL~~~--~~~~~~~~~l~~I~~~~~rl~~LI~~LL~~sr~e~g~~~l~~~~~~L 419 (460)
+.+.++...++|++++||++|.++++.+... ..+++.++.++.+.+.++++...+++++... .+.++
T Consensus 26 ~er~~la~~l~~~l~~~L~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~r~~~~~~-----------~~~~l 94 (218)
T 3ehh_A 26 EERQRMARDLVDTLGQKLSLMGLKSDLARKLIYKDPEQAARELKSVQQTARTSLNEVRKIVSSM-----------KGIRL 94 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-----------CCCCH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCcCH
Confidence 5567899999999999999999999988753 3344457888999998888888888877432 35688
Q ss_pred HHHHHHHHHHHhhhcccceEeecC
Q 012575 420 QIVLREVIIFSSVLQNFTYRVGTK 443 (460)
Q Consensus 420 ~~li~~v~~~~~~~a~~~~~l~~~ 443 (460)
.+.++.+...++.. ++.+.++.+
T Consensus 95 ~~~l~~~~~~~~~~-~~~~~~~~~ 117 (218)
T 3ehh_A 95 KDELINIKQILEAA-DIMFIYEEE 117 (218)
T ss_dssp HHHHHHHHHHHHHT-TCEEECCCC
T ss_pred HHHHHHHHHHHHhc-CCEEEEeCC
Confidence 88888888776533 455555444
No 53
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=97.42 E-value=0.00016 Score=71.13 Aligned_cols=84 Identities=11% Similarity=-0.034 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccccccHHH
Q 012575 342 HARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQI 421 (460)
Q Consensus 342 ~~k~~f~~~iSHELRtPLt~I~g~~~lL~~~~~~~~~~~~l~~I~~~~~rl~~LI~~LL~~sr~e~g~~~l~~~~~~L~~ 421 (460)
..|.+|+.+++||||||++.|.+.++.+.. +.+.++++++.++++++++++. +.+++++.+
T Consensus 8 ~~k~d~l~~~~~el~~~~~~l~~~~~~~~~-----------~~i~~~~~~l~~l~~~l~~~~~--------~~~~~~~~~ 68 (379)
T 1b3q_A 8 IEKLDNLMDLMGELVIARSRILETLKKYNI-----------KELDESLSHLSRITLDLQNVVM--------KIRMVPISF 68 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSCCC-----------HHHHHHHHHHHHHHHHHHHHHH--------HHHEEETHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----------HHHHHHHHHHHHHHHHHHHHHH--------HcceecHHH
Confidence 567799999999999999999988775543 5689999999999999999874 234677788
Q ss_pred HHHHHHHHHhhhc---ccceEeecCC
Q 012575 422 VLREVIIFSSVLQ---NFTYRVGTKL 444 (460)
Q Consensus 422 li~~v~~~~~~~a---~~~~~l~~~~ 444 (460)
+++++...++..+ ++++.++.+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~v~l~~~~ 94 (379)
T 1b3q_A 69 VFNRFPRMVRDLAKKMNKEVNFIMRG 94 (379)
T ss_dssp HHTTHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEEcC
Confidence 8888888777775 4555555543
No 54
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=96.00 E-value=0.14 Score=46.69 Aligned_cols=162 Identities=12% Similarity=0.073 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhhhcCCceeEEeccCCCCCceEEEEee
Q 012575 122 LKNRADELDREMGLIL----TQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTL 197 (460)
Q Consensus 122 l~~~~~~l~~e~~~l~----~~~e~~~~l~~lt~~I~~sld~~~il~~~~~~l~~~l~~~~~~i~~~~~~~~~~~~~~~~ 197 (460)
+++++.+|+.++..+- +.+.....+..+...+-...|.++++..+...+.+.|+++.+.+++.++..... ...
T Consensus 77 LR~r~~~Le~~L~~Li~~A~~Ne~l~~~~~~l~l~LL~a~sl~~l~~~L~~~l~~~F~l~~v~L~L~~~~~~~~---~~~ 153 (252)
T 3e98_A 77 LRERNIEMRHRLSQLMDVARENDRLFDKTRRLVLDLLDATSLEDVVSTVEDSLRHEFQVPYVSLILFSDSSVSV---GRS 153 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHTSCCSEEEEEEECSSCCCS---SEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHCCCCeEEEEEecCccccc---hhh
Confidence 5677777777776643 334444557778888899999999999999999999999999999887653210 000
Q ss_pred cCCccCCcccccCChhHHHHhhccCceeecCCCchhhhhhcccCCCCCcceEEEeeccccCCccccCCCcccCCceeEEE
Q 012575 198 NNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMV 277 (460)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~g~~~~~v 277 (460)
. ........+...+..+++..-.........-|.. .....-.+.-.+|| ..+. .+|+
T Consensus 154 ~-------~~~~~~~~~~~~l~~~~py~G~l~~~e~~~lFg~-~~a~~v~S~AllpL--------------~~~~-~~Gl 210 (252)
T 3e98_A 154 V-------SSAEAHQAIGGLLSGGKTVCGVLRPHELAFLFGE-SDRDEIGSAAVVSL--------------SFQG-LHGV 210 (252)
T ss_dssp E-------CHHHHHHHHHHHHTTCCCSTTCCCHHHHHHHCCC-TTGGGCCEEEEEEE--------------ESSS-EEEE
T ss_pred c-------cchhHHHHHHHHhCCCCceECCCCchHHHHhcCC-CccccccceEEEEc--------------CCCC-ceEE
Confidence 0 0000011223333332222111111111111110 00001123333443 2223 5788
Q ss_pred EEeeCCCCCccccc-HHHHHHHHHHHHHHHHHH
Q 012575 278 LMLPTDGGRKWRDH-ELELIDVVADQVAVALSH 309 (460)
Q Consensus 278 ~~~~~~~~~~~~~~-e~~ll~~ia~~~a~ai~~ 309 (460)
+++.+..+..|++. ...++..++.-++.++.+
T Consensus 211 LalGS~D~~rF~p~mgT~fL~~La~vvs~~L~r 243 (252)
T 3e98_A 211 LAIGSPDPQHYKSSLGTLFLGYVAEVLARVLPR 243 (252)
T ss_dssp EEEEESSTTGGGSTTTTHHHHHHHHHHHHHGGG
T ss_pred EEEcCCChhhcCCCCcHHHHHHHHHHHHHHHHH
Confidence 88888777778665 688899999888776643
No 55
>4eu0_A PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A {Pseudomonas aeruginosa} PDB: 4euv_A* 4etz_A* 4etx_A 4dmz_A 4dn0_A*
Probab=94.88 E-value=0.26 Score=45.97 Aligned_cols=132 Identities=14% Similarity=0.126 Sum_probs=94.3
Q ss_pred HHHHHHHHHHhhhhcCCceeEEeccCCCC-CceEEEEeecCCccCCcccccCChhHHHHhhccCceeecCCCchhhhhhc
Q 012575 160 HTILKTTLVELGRTLGLEECALWMPSRTG-LNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLL 238 (460)
Q Consensus 160 ~~il~~~~~~l~~~l~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 238 (460)
..+.+..++-+++..+++.+++|..++++ ......+..|+. .+...+++.+...+.+++...+.......
T Consensus 25 ~~~a~~lL~llaq~~~l~~Aaly~~~~~~~~~~~p~A~iG~~----~~l~~~DpLVr~alet~~l~~v~~~~~~~----- 95 (298)
T 4eu0_A 25 DALAETVLALLAQYGSLRIAGLYRVRYDRTPEPQPLATLGEM----PALDADDLLVRTCLERGELVSVRQELLER----- 95 (298)
T ss_dssp HHTHHHHHHHHHHHHTCSEEEEEEBCTTSCBCSSCSEEESSC----CCCCSCCHHHHHHHHHTSCEECCC----------
T ss_pred hHHHHHHHHHHHHhcCeeEEEEEEEECCcccCCceeeecCCC----CCCCCCCHHHHHHHHhCCceeechhhhhc-----
Confidence 45577888889999999999999888776 445555666542 25667899999999999888776532110
Q ss_pred ccCCCCCcceEEEeeccccCCccccCCCcccCCceeEEEEEeeCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHH
Q 012575 239 VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILE 314 (460)
Q Consensus 239 ~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~g~~~~~v~~~~~~~~~~~~~~e~~ll~~ia~~~a~ai~~a~l~~ 314 (460)
...........++||.. .++...|++++..-....++++.+.++..++++.+.++.++....
T Consensus 96 -~~~~~~sryL~viPLld-------------~~g~i~Gvl~V~~mpF~a~~~~~LqlL~VL~g~~ad~i~~~~~~~ 157 (298)
T 4eu0_A 96 -GEQRAHSAAAVCVPLVD-------------TDGRILALLAVEQMPFFVFNERTFSLLAILAGHIADLLQSDRRAL 157 (298)
T ss_dssp ---------CCEEEEEEC-------------TTSCEEEEEEEEECCGGGCSHHHHHHHHHHHHHHHHHHGGGGGGG
T ss_pred -cccccccceEEEEEeec-------------CCCcEEEEEEEecCCccccCHhHHHHHHHHHHHHHHHHHhhhhcc
Confidence 00011234556677643 344468999998888889999999999999999999998887663
No 56
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=93.03 E-value=0.056 Score=58.12 Aligned_cols=76 Identities=18% Similarity=0.308 Sum_probs=62.0
Q ss_pred hhccCceeecCCCchhhhhhcccCCCCCcceEEEeeccccCC-------ccccCCCcccCCceeEEEEEeeCCCCCcccc
Q 012575 218 FNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSN-------FQINDWPELPAKSYAVMVLMLPTDGGRKWRD 290 (460)
Q Consensus 218 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~-------~~~~~~~~l~~g~~~~~v~~~~~~~~~~~~~ 290 (460)
+...+.+.+++.++.++++|++..|..+.+..|+|.|.+.++ .+...|++|++|.|.+.|.+.+.++ .|++
T Consensus 694 i~~~~~i~L~~~~n~~~i~fs~l~y~~~~~~~y~YrL~G~d~~W~~~~~~~~~~ytnL~pG~Y~f~V~a~n~~g--~w~~ 771 (795)
T 4a2l_A 694 ISETKSITLKSWQTAFSIEFVVSNYISGQHNTFAYKLEGYDKEWYYLTDSRTVSYSNLPQGTYQFLVKAANSDG--KWNP 771 (795)
T ss_dssp GGGCSEEEECTTCCEEEEEEEECCTTTTTCCEEEEEEETTCSSCEEESSCCEEEEECCCSEEEEEEEEEECTTS--CBCS
T ss_pred cccccceEECCcCcEEEEEEEEccCCCccccEEEEEEeCCCCCccCCCCcCeEEecccCCCeEEEEEEEECCCC--ccCC
Confidence 344577899999999999999999999999999999966432 2335689999999999999998887 7876
Q ss_pred cHHHH
Q 012575 291 HELEL 295 (460)
Q Consensus 291 ~e~~l 295 (460)
.+..+
T Consensus 772 ~~~~l 776 (795)
T 4a2l_A 772 IPTAL 776 (795)
T ss_dssp SCEEE
T ss_pred CceEE
Confidence 54433
No 57
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=92.84 E-value=0.042 Score=58.74 Aligned_cols=75 Identities=15% Similarity=0.176 Sum_probs=61.4
Q ss_pred hccCceeecCCCchhhhhhcccCCCCCcceEEEeeccccCC-c-------cccCCCcccCCceeEEEEEeeCCCCCcccc
Q 012575 219 NSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSN-F-------QINDWPELPAKSYAVMVLMLPTDGGRKWRD 290 (460)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~-~-------~~~~~~~l~~g~~~~~v~~~~~~~~~~~~~ 290 (460)
...+.+.+++.++.++++|++.+|..+.+..|+|.|.+.++ + +...|++|++|.|.+.|.+.+.++ .|++
T Consensus 660 ~~~~~i~L~~~~~~~~i~f~~l~y~~~~~~~y~Y~L~G~d~~W~~~~~~~~~~~ytnL~pG~Y~f~V~a~~~~g--~w~~ 737 (758)
T 3ott_A 660 RYTNSIKLKYDQNNLSFELSDLPYSLDEKNKFVYRLEGMDKEWNFLKSNINRITYSNLSYGNYQLIISKLERDG--QPSN 737 (758)
T ss_dssp GGCSEEEECTTCCCEEEEEECCCTTCSSCCCEEEEEETTCSSCEECCTTCCEEEECSCCSEEEEEEEEEBCTTS--CBCS
T ss_pred cccccEEecCCCcEEEEEEEcccCCCCccCeEEEEecCCCCCccCCCCCcceEEecCCCCccEEEEEEEeCCCC--CccC
Confidence 34567899999999999999999999999999999965432 1 234689999999999999998887 7887
Q ss_pred cHHHH
Q 012575 291 HELEL 295 (460)
Q Consensus 291 ~e~~l 295 (460)
.+..+
T Consensus 738 ~~~~l 742 (758)
T 3ott_A 738 RPHIL 742 (758)
T ss_dssp SCEEE
T ss_pred ccEEE
Confidence 65443
No 58
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=91.52 E-value=0.083 Score=56.64 Aligned_cols=71 Identities=14% Similarity=0.215 Sum_probs=59.3
Q ss_pred cCc-eeecCCCchhhhhhcccCCCCCcceEEEeeccccC-------CccccCCCcccCCceeEEEEEeeCCCCCcccccH
Q 012575 221 AQA-MRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLS-------NFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHE 292 (460)
Q Consensus 221 ~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~-------~~~~~~~~~l~~g~~~~~v~~~~~~~~~~~~~~e 292 (460)
.+. +.+++.++.++++|++..|..+.+..|+|.|.+.+ +.+...|++|++|.|.+.|.+.+.++ .|++.+
T Consensus 690 ~~~~i~L~~~~n~~~i~f~~l~y~~~~~~~y~YrL~G~d~~W~~~~~~~~~~ytnL~pG~Y~f~V~a~~~~g--~w~~~~ 767 (781)
T 3v9f_A 690 SEGEIELTHEQNSFNLTFNVQDYSLANQVEYAYMLKGLENSWYTINEQNSVTFRNIPPGKYEFLVKARLHNQ--DWSEDT 767 (781)
T ss_dssp CSSEEEECGGGCCEEEEEECSCSGGGGGEEEEEEEETTEEEEEEESSCSEEEECSCCSEEEEEEEEEEETTS--CCCSCC
T ss_pred cCccEEecCCCCEEEEEEEecCCCCccccEEEEEecCCCCCccCcCCcceEEEcCCCCceEEEEEEEECCCC--ccCCCc
Confidence 345 88999999999999999999999999999996533 22346789999999999999999887 787654
Q ss_pred H
Q 012575 293 L 293 (460)
Q Consensus 293 ~ 293 (460)
.
T Consensus 768 ~ 768 (781)
T 3v9f_A 768 T 768 (781)
T ss_dssp E
T ss_pred e
Confidence 3
No 59
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=78.39 E-value=2.5 Score=42.44 Aligned_cols=50 Identities=8% Similarity=-0.024 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhhhcCCceeEEeccC
Q 012575 136 ILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPS 185 (460)
Q Consensus 136 l~~~~e~~~~l~~lt~~I~~sld~~~il~~~~~~l~~~l~~~~~~i~~~~ 185 (460)
.+.+.+..+.+..+...++++.|..+++.+...++.+.+++|++++|..+
T Consensus 312 ~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~ll~adg~al~~~~ 361 (505)
T 3nhq_A 312 AELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLGG 361 (505)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHCTTTSHHHHTTCSEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCHHHHHHHhhHHHHHHhCCCeEEEEECC
Confidence 33455666778889999999999999999999999999999999999855
No 60
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=67.47 E-value=9.8 Score=32.79 Aligned_cols=46 Identities=15% Similarity=0.042 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 012575 345 NDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTT 394 (460)
Q Consensus 345 ~~f~~~iSHELRtPLt~I~g~~~lL~~~~~~~~~~~~l~~I~~~~~rl~~ 394 (460)
.+-+....||+.|=|+.|.|++++=. -++..+|++.+....+....
T Consensus 22 ~~~LR~qrHdf~NkLqvI~GLlql~~----ydea~~yI~~~~~~~q~~~~ 67 (192)
T 1ixm_A 22 IHLLGHSRHDWMNKLQLIKGNLSLQK----YDRVFEMIEEMVIDAKHESK 67 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999999999998532 35567788777777766554
No 61
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=63.48 E-value=71 Score=27.33 Aligned_cols=92 Identities=24% Similarity=0.231 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCchHHHH-HHHHHHHHHHHHHHHHHHHhhcc---ch---hHHH--HHHHH
Q 012575 19 RYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVL-MQFGSFIILCGLTHFISLWTFTV---HS---KAVA--VVMTI 89 (460)
Q Consensus 19 ~~~~~~d~~i~~~~~~i~~~l~~~~~~~~~~~~~~~~-~~~~~fi~~cg~~hl~~~~~~~~---~~---~~~~--~~~~~ 89 (460)
+.|.+.|..++.++..+. .+|.++++--...+++ ..+. -.++..+.|.++.+.+|. |. .++| ...+.
T Consensus 88 p~q~lldy~laf~~~Gla---G~f~~~~~~~~~~~~~lg~~i-g~~~r~~~~~isgvvff~~yaP~g~~~~~ySl~~N~~ 163 (192)
T 3rlb_A 88 LSQAFLEYLVAPVSLGIA---GLFRQKTAPLKLAPVLLGTFV-AVLLKYFFHFIAGIIFWSQYAWKGWGAVAYSLAVNGI 163 (192)
T ss_dssp HHHHHHHHTHHHHHGGGG---GGGCCCSSSCCHHHHHHHHHH-HHHHHHHHHHHHHHHHCGGGCCTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH---HhheeccccccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhCcccCcHHHHHHHHHHH
Confidence 458889999888887776 3343332221122222 2211 122334566766554442 21 0111 22233
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhc
Q 012575 90 AKMACAFVSCITALMLVHIIPDLLS 114 (460)
Q Consensus 90 ~k~~ta~~s~~~a~~l~~~~p~~l~ 114 (460)
.-..++++++.....+.+-+|+.+.
T Consensus 164 ~~l~~~ii~~iv~~lL~k~~~~~~~ 188 (192)
T 3rlb_A 164 SGILTAIAAFVILIIFVKKFPKLFI 188 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGGS
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 3445555555555555555555544
No 62
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=60.68 E-value=53 Score=28.91 Aligned_cols=81 Identities=9% Similarity=0.018 Sum_probs=50.2
Q ss_pred HHHHHHHhcccHHHHHHHHHHHhhhhcCCceeEEeccCCC---CCceEEEEeecCCcc---CCcccccCChhHHHHhhcc
Q 012575 148 MLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRT---GLNLELSYTLNNQIQ---IGSSVPINLPIVTDVFNSA 221 (460)
Q Consensus 148 ~lt~~I~~sld~~~il~~~~~~l~~~l~~~~~~i~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 221 (460)
++.+.+....+.+++.... ..+.+.+|.+++++....+. .....+...+...+. .....-..+|.+.....+.
T Consensus 7 ~~~~~l~~a~~~~~l~~~l-~~~~~~lGf~~~~y~~~~~~~~~~~~~~i~~~~p~~w~~~Y~~~~y~~~DPv~~~~~~~~ 85 (237)
T 3szt_A 7 GYLEILSRITTEEEFFSLV-LEICGNYGFEFFSFGARAPFPLTAPKYHFLSNYPGEWKSRYISEDYTSIDPIVRHGLLEY 85 (237)
T ss_dssp SHHHHHHHCCSHHHHHHHH-HHHHHHTTCSEEEEEEECCCSTTSCCEEEEECCCHHHHHHHHHTTGGGTCHHHHHHHHSC
T ss_pred HHHHHHHcCCCHHHHHHHH-HHHHHHcCCCeEEEEeecCCCCCCCCeEeeCCCCHHHHHHHHHCCCcccChHhhhhcCCC
Confidence 4455677777877777766 88888999999998764432 122223333333321 1123445678888888888
Q ss_pred CceeecCC
Q 012575 222 QAMRLPYN 229 (460)
Q Consensus 222 ~~~~l~~~ 229 (460)
.+......
T Consensus 86 ~p~~W~~~ 93 (237)
T 3szt_A 86 TPLIWNGE 93 (237)
T ss_dssp SCEEEETT
T ss_pred CCEEeCCC
Confidence 87776544
No 63
>2lq0_A De novo designed antifreeze peptide 1M; AFP, antifreeze protein; NMR {Synthetic}
Probab=56.24 E-value=8.6 Score=20.25 Aligned_cols=15 Identities=33% Similarity=0.565 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHH
Q 012575 56 MQFGSFIILCGLTHF 70 (460)
Q Consensus 56 ~~~~~fi~~cg~~hl 70 (460)
-+-++||+-|++-|-
T Consensus 7 plaasfivrcafehs 21 (26)
T 2lq0_A 7 PLAASFIVRCAFEHS 21 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhh
Confidence 567889999998884
No 64
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=50.03 E-value=39 Score=33.91 Aligned_cols=48 Identities=15% Similarity=0.088 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhhhcCCceeEEeccC
Q 012575 138 TQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPS 185 (460)
Q Consensus 138 ~~~e~~~~l~~lt~~I~~sld~~~il~~~~~~l~~~l~~~~~~i~~~~ 185 (460)
.+.+..+....+...++.+.|..+.+.+....+.+.+++|.+++|..+
T Consensus 327 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ll~l~~adG~al~~~~ 374 (520)
T 3zq5_A 327 YRVQLAEHEAVLLDKMTTAADFVEGLTNHPDRLLGLTGSQGAAICFGE 374 (520)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSHHHHHHTCHHHHHHTTTCSEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHcCcChhHHHHhccHHHHhhhcCCeEEEEECC
Confidence 334445556778888889999999999999999999999999999743
No 65
>1vf5_A Cytochrome B6; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.21.1.2 PDB: 2d2c_A* 2e74_A* 2e75_A* 2e76_A* 2zt9_A* 1q90_B*
Probab=45.78 E-value=47 Score=28.99 Aligned_cols=85 Identities=12% Similarity=0.162 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHH-hcCCCchHHHHH----HHHHHHHHHHHHHHHHHHhhccch--hHHHHHHHHH
Q 012575 18 VRYQYISDILIALAYFSIPVELIYFVQ-KSAFFPYRWVLM----QFGSFIILCGLTHFISLWTFTVHS--KAVAVVMTIA 90 (460)
Q Consensus 18 ~~~~~~~d~~i~~~~~~i~~~l~~~~~-~~~~~~~~~~~~----~~~~fi~~cg~~hl~~~~~~~~~~--~~~~~~~~~~ 90 (460)
+..|++|-++.|.-|-.-+-.-..-+. =-+|+++.|.+- ..+++.++|-..|..-.+...... ...-|..|++
T Consensus 44 l~iqi~TG~~Lam~Y~p~~~~Af~Sv~~I~~dv~~GwliR~~H~~gAs~ffi~~ylHi~Rglyygsy~~p~~~~W~~Gv~ 123 (215)
T 1vf5_A 44 FLIQFATGFAMTFYYKPTVTEAYASVQYIMNEVSFGWLIRSIHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWISGVI 123 (215)
T ss_dssp HHHHHHHHHHHTTTCCCSTTTHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSSCSHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhcCChhHHHHHHHHHHhhcccchhhccchHHHHHHHHHHHHHHHHHHHHhhhcccCCCceeHhHHH
Confidence 356888888888765443221111111 135789999985 678899999999999886543322 3347889887
Q ss_pred HHHHHHHHHHHH
Q 012575 91 KMACAFVSCITA 102 (460)
Q Consensus 91 k~~ta~~s~~~a 102 (460)
-++..+....+.
T Consensus 124 l~~l~m~~aF~G 135 (215)
T 1vf5_A 124 LAVITVSFGVTG 135 (215)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc
Confidence 766555544444
No 66
>2qjy_A Cytochrome B; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_A* 2qjk_A* 2qjp_A* 1zrt_C* 2yiu_A*
Probab=40.30 E-value=80 Score=30.85 Aligned_cols=87 Identities=11% Similarity=0.103 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHH-HhcCCCchHHHHH----HHHHHHHHHHHHHHHHHHhhccc--hhHHHHHHHHHH
Q 012575 19 RYQYISDILIALAYFSIPVELIYFV-QKSAFFPYRWVLM----QFGSFIILCGLTHFISLWTFTVH--SKAVAVVMTIAK 91 (460)
Q Consensus 19 ~~~~~~d~~i~~~~~~i~~~l~~~~-~~~~~~~~~~~~~----~~~~fi~~cg~~hl~~~~~~~~~--~~~~~~~~~~~k 91 (460)
..|++|=++.|.-|-.-.-.-..-+ .=-+|+++.|++. ..|++.++|-..|.+-.+..... ++..-|..|++-
T Consensus 56 ~iQilTGifLam~Y~p~~~~Af~Sv~~I~rdV~~GwliR~~H~~gAs~ffi~iylHi~RglyygsY~~Pr~~~W~~Gv~l 135 (445)
T 2qjy_A 56 VLQIVTGIVLAMHYTPHVDLAFASVEHIMRNVNGGFMLRYLHANGASLFFIAVYLHIFRGLYYGSYKAPREVTWIVGMLI 135 (445)
T ss_dssp HHHHHHHHHHHTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHeeccCCcHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccceeeehHHH
Confidence 5588888888775543321111111 1134789999984 56889999999999988654332 256689999887
Q ss_pred HHHHHHHHHHHHHH
Q 012575 92 MACAFVSCITALML 105 (460)
Q Consensus 92 ~~ta~~s~~~a~~l 105 (460)
++..++...+...+
T Consensus 136 ~ll~m~taF~GYvL 149 (445)
T 2qjy_A 136 YLAMMATAFMGYVL 149 (445)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHheec
Confidence 76665555544443
No 67
>3cx5_C Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.32.1.1 f.21.1.2 PDB: 3cxh_C* 1ezv_C* 1kb9_C* 1kyo_C* 1p84_C* 2ibz_C*
Probab=39.36 E-value=1e+02 Score=29.41 Aligned_cols=88 Identities=13% Similarity=0.087 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHH-hcCCCchHHHHH----HHHHHHHHHHHHHHHHHHhhccc--hhHHHHHHHHHH
Q 012575 19 RYQYISDILIALAYFSIPVELIYFVQ-KSAFFPYRWVLM----QFGSFIILCGLTHFISLWTFTVH--SKAVAVVMTIAK 91 (460)
Q Consensus 19 ~~~~~~d~~i~~~~~~i~~~l~~~~~-~~~~~~~~~~~~----~~~~fi~~cg~~hl~~~~~~~~~--~~~~~~~~~~~k 91 (460)
..|++|=++.|.-|-.-.-.-..-+. =-+|+++.|.+. ..|++.++|-..|.+-.+..... ++..-|..|++-
T Consensus 41 ~iqi~TGifLam~Y~p~~~~Af~Sv~~I~~dV~~GwliR~~H~~gAs~ffi~iylHi~Rglyygsy~~Pr~~~W~~Gv~l 120 (385)
T 3cx5_C 41 VIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGASFFFMVMFMHMAKGLYYGSYRSPRVTLWNVGVII 120 (385)
T ss_dssp HHHHHHHHHHHTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHeeeeCCchHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcceeeecHHH
Confidence 55888888877755433211111111 134789999984 56889999999999988654332 255689999888
Q ss_pred HHHHHHHHHHHHHHH
Q 012575 92 MACAFVSCITALMLV 106 (460)
Q Consensus 92 ~~ta~~s~~~a~~l~ 106 (460)
++..++...+...+.
T Consensus 121 ~ll~m~~aF~GYvLP 135 (385)
T 3cx5_C 121 FILTIATAFLGYCCV 135 (385)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcc
Confidence 776666655555444
No 68
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=39.35 E-value=35 Score=29.12 Aligned_cols=27 Identities=4% Similarity=-0.032 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 012575 340 AIHARNDFRAVMNHEMRTLMHAIIALS 366 (460)
Q Consensus 340 ~~~~k~~f~~~iSHELRtPLt~I~g~~ 366 (460)
..+...++...++|.|......+....
T Consensus 28 r~~la~~l~~~l~~~L~~i~~~~~~~~ 54 (218)
T 3ehh_A 28 RQRMARDLVDTLGQKLSLMGLKSDLAR 54 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 346666777888888865555544433
No 69
>1pp9_C Cytochrome B; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.32.1.1 f.21.1.2 PDB: 1bgy_C* 1be3_C* 1l0n_C* 1ntk_C* 1ntm_C* 1ntz_C* 1nu1_C* 1l0l_C* 1ppj_C* 1sqb_C* 1sqp_C* 1sqq_C* 1sqv_C* 1sqx_C* 2a06_C* 2fyu_C* 2ybb_C* 1qcr_C* 3l70_C* 2bcc_C* ...
Probab=38.45 E-value=82 Score=30.08 Aligned_cols=87 Identities=13% Similarity=0.183 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHH-HhcCCCchHHHHH----HHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Q 012575 19 RYQYISDILIALAYFSIPVELIYFV-QKSAFFPYRWVLM----QFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMA 93 (460)
Q Consensus 19 ~~~~~~d~~i~~~~~~i~~~l~~~~-~~~~~~~~~~~~~----~~~~fi~~cg~~hl~~~~~~~~~~~~~~~~~~~~k~~ 93 (460)
..|++|=++.|.-|-.-+-.-..-+ .=-+|+++.|.+. ..|++.++|-..|.+-.+.....-++--|..|++-++
T Consensus 42 ~iqi~TGi~Lam~Y~p~~~~Af~Sv~~I~~dV~~GwliR~~H~~gAs~ffi~~ylHi~Rglyygsy~~~~~W~~Gv~l~l 121 (379)
T 1pp9_C 42 ILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLYYGSYTFLETWNIGVILLL 121 (379)
T ss_dssp HHHHHHHHHHHTTCCCCTTTHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHheeeeCCchHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheecCcceehhhHHHHH
Confidence 5588888888775543321111111 1134778999884 5688999999999998866544444558999988776
Q ss_pred HHHHHHHHHHHH
Q 012575 94 CAFVSCITALML 105 (460)
Q Consensus 94 ta~~s~~~a~~l 105 (460)
..++...+...+
T Consensus 122 l~m~~aF~GYvL 133 (379)
T 1pp9_C 122 TVMATAFMGYVL 133 (379)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHheeeec
Confidence 666655555443
No 70
>2w1r_A Spovt, stage V sporulation protein T; regulatory GAF domain of spovt, transcription, transcription regulation, repressor, activator; 1.50A {Bacillus subtilis}
Probab=30.87 E-value=1.8e+02 Score=22.51 Aligned_cols=114 Identities=10% Similarity=0.025 Sum_probs=58.6
Q ss_pred HHHHHHhhhhcCCceeEEeccCCCCCceEEEEeecCCccCCcccccCChhHHHHhhccCceeecCCCchhhhhhcccCCC
Q 012575 164 KTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYV 243 (460)
Q Consensus 164 ~~~~~~l~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 243 (460)
+...+.+.+.+++ .++| -|. ..+......+.....+ -++ ......++.+++......... ..... ...
T Consensus 5 ~~~AeiI~~~~~~-aV~I--tD~--~~ilA~~G~g~~~~~~--~~i-s~~~~~~i~~~k~~~~~~~~~---~~~~~-~~~ 72 (123)
T 2w1r_A 5 KEYADALYDSLGH-SVLI--CDR--DVYIAVSGSSKKDYLN--KSI-SEMLERTMDQRSSVLESDAKS---VQLVN-GID 72 (123)
T ss_dssp HHHHHHHHHHHCS-EEEE--ECS--SBEEEEESSCHHHHBT--CBB-CHHHHHHHHHCSCEEESSCEE---EESBT-TCE
T ss_pred HHHHHHHHHHHCC-eEEE--EcC--ccEEEEEecChhhcCC--Ccc-CHHHHHHHHcCCEEEEcCCcc---ccccC-CCC
Confidence 4455666777777 4443 233 2232222221111111 244 556888999998888754332 11000 111
Q ss_pred CCcceEEEeeccccCCccccCCCcccCCceeEEEEEeeCCCCCcccccHHHHHHHHHHHHH
Q 012575 244 PPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVA 304 (460)
Q Consensus 244 ~~~~~~~~~pl~~~~~~~~~~~~~l~~g~~~~~v~~~~~~~~~~~~~~e~~ll~~ia~~~a 304 (460)
.+....+.+|+.. .| -.+|++.+.+. .+.+++.+.++.+.+|.-++
T Consensus 73 ~~~~s~ii~PI~~-------------~g-~viG~i~l~~~-~~~~~~~~~~la~gla~lls 118 (123)
T 2w1r_A 73 EDMNSYTVGPIVA-------------NG-DPIGAVVIFSK-DQTMGEVEHKAVETAAGFLA 118 (123)
T ss_dssp EEESEEEEEEEEE-------------TT-EEEEEEEEEES-SSCCCHHHHHHHHHHHHHHC
T ss_pred CCeeEEEEEEEEE-------------CC-EEEEEEEEEEc-CCCCCHHHHHHHHHHHHHHH
Confidence 1235566666533 33 34666666533 33588888888887777554
No 71
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=29.45 E-value=55 Score=17.50 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 012575 122 LKNRADELDREMGLIL 137 (460)
Q Consensus 122 l~~~~~~l~~e~~~l~ 137 (460)
++++++++++++..++
T Consensus 5 lkqknarlkqeiaale 20 (28)
T 3ra3_B 5 LKQKNARLKQEIAALE 20 (28)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHH
Confidence 6778888888776543
No 72
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=26.44 E-value=3.2e+02 Score=23.66 Aligned_cols=113 Identities=10% Similarity=0.145 Sum_probs=62.0
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------H
Q 012575 287 KWRDHELELIDVVADQVAVALSHAAILEDSMR--ARNQLMEQNVALDSARREAEKAIHARNDF----------------R 348 (460)
Q Consensus 287 ~~~~~e~~ll~~ia~~~a~ai~~a~l~~~~~~--~~~~l~~~~~~L~~~~~~l~~~~~~k~~f----------------~ 348 (460)
.+.+.+-.+...+..++..+..-+..+.+... .....++..+++.....+ +++.+.+. +
T Consensus 20 ~l~pke~~ff~ll~~~a~~v~~~a~~L~~~l~~~~~~~~~~~~~~I~~lE~~---aD~i~~~i~~~L~~~fitP~dReDI 96 (227)
T 3l39_A 20 KFTPKEPKFFPLLKQLSDVLSASSVLLVESMEHDLPTERADYYKQIKDMERE---GDRLTHLIFDELSTTFITPFDREDI 96 (227)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHCSCCSSCHHHH
T ss_pred hhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHcCcCCCCHHHH
Confidence 44555556666677776666666666665543 112222222222222222 22222222 3
Q ss_pred HHHHHHhHhHHHHHHHHHHHHh--c-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012575 349 AVMNHEMRTLMHAIIALSSLLL--E-TDLTPEQRVMIETVLKSSNLLTTLVDDVLDL 402 (460)
Q Consensus 349 ~~iSHELRtPLt~I~g~~~lL~--~-~~~~~~~~~~l~~I~~~~~rl~~LI~~LL~~ 402 (460)
..+++.+=.-+..|.+.+..+. + +..+++..++++.+.++++.+...++.|-++
T Consensus 97 ~~L~~~lDdI~D~ie~~a~~l~l~~~~~~~~~~~~l~~~i~~~~~~l~~ai~~L~~~ 153 (227)
T 3l39_A 97 HDLASCMDDVIDGINSSAKRIVIYNPRPISESGKELSRLIHEEAINIGKAMDELETF 153 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555443 1 3457788899999999999988888877544
No 73
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=25.99 E-value=3.1e+02 Score=23.47 Aligned_cols=33 Identities=15% Similarity=0.117 Sum_probs=19.9
Q ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012575 75 TFTVHSKAVAVVMTIAKMACAFVSCITALMLVH 107 (460)
Q Consensus 75 ~~~~~~~~~~~~~~~~k~~ta~~s~~~a~~l~~ 107 (460)
.||..+++..|..+.+..-..++-++-|+-+.+
T Consensus 138 KF~~~~~~aa~~~t~vliPv~i~F~~Fa~hFYr 170 (214)
T 4hkr_A 138 KFYDLSRRAAWSATVVLIPVMIIFMAFAIHFYR 170 (214)
T ss_dssp HHTTTCHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred EeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367666666676666555555555555555544
No 74
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=24.98 E-value=1.5e+02 Score=20.88 Aligned_cols=35 Identities=20% Similarity=0.180 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012575 121 FLKNRADELDREMGLILTQEETGRHVRMLTHEIRS 155 (460)
Q Consensus 121 ~l~~~~~~l~~e~~~l~~~~e~~~~l~~lt~~I~~ 155 (460)
.++.+.+++++....++..+.+........+.+++
T Consensus 27 ~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lqs 61 (72)
T 3nmd_A 27 ALQEKIEELRQRDALIDELELELDQKDELIQMLQN 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455544444444444444333333333333
No 75
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=24.51 E-value=2.2e+02 Score=25.34 Aligned_cols=38 Identities=8% Similarity=-0.056 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhhhcCCceeEEec
Q 012575 145 HVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWM 183 (460)
Q Consensus 145 ~l~~lt~~I~~sld~~~il~~~~~~l~~~l~~~~~~i~~ 183 (460)
.+.++-..+....+.+++. ..+..+.+.+|.+++++..
T Consensus 23 ~l~~~l~~l~~a~~~~~l~-~~l~~~~~~lGf~~~~y~~ 60 (265)
T 3qp6_A 23 TLLEWIHMAGHIETEGELK-AFLDNILSQAPSDRIILVL 60 (265)
T ss_dssp HHHHHHHHHTTCCSHHHHH-HHHHHHTCSSTTCEEEEEE
T ss_pred HHHHHHHHHhcCCCHHHHH-HHHHHHHHHcCCCEEEEEe
Confidence 3566677788888888877 7788889999999998754
No 76
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=24.42 E-value=5.3e+02 Score=25.56 Aligned_cols=47 Identities=9% Similarity=0.027 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q 012575 319 ARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIAL 365 (460)
Q Consensus 319 ~~~~l~~~~~~L~~~~~~l~~~~~~k~~f~~~iSHELRtPLt~I~g~ 365 (460)
.++.+....++|++..+++++..+.-.++...+.-.||.=+......
T Consensus 58 qErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dN 104 (562)
T 3ghg_A 58 VNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNR 104 (562)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhcc
Confidence 33444444444444444554444445556666666666666555533
No 77
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=20.76 E-value=70 Score=25.17 Aligned_cols=30 Identities=10% Similarity=0.144 Sum_probs=19.5
Q ss_pred ccccccHHHHHHHHHHHHhhhc-ccceEeec
Q 012575 413 DNGPFNLQIVLREVIIFSSVLQ-NFTYRVGT 442 (460)
Q Consensus 413 ~~~~~~L~~li~~v~~~~~~~a-~~~~~l~~ 442 (460)
+.+++|+.+++++++..++... ++++.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~ 34 (150)
T 1ysr_A 4 DHVPVDITDLLDRAAHDAARIYPDLDVSLVP 34 (150)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHSTTCEEEECS
T ss_pred cccccCHHHHHHHHHHHHHHhccCCceEEcc
Confidence 4567788888888877776665 44444443
Done!