BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012577
         (460 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3CMI|A Chain A, Crystal Structure Of Glutathione-Dependent Phospholipid
           Peroxidase Hyr1 From The Yeast Saccharomyces Cerevisiae
          Length = 171

 Score = 33.1 bits (74), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 84  QKIP-ESFRGEVVYRTLLAN-CVAGNNVKKAEEVFNRMKDKGFPVTSFACNQL 134
           Q  P +  +G+VV    +A+ C      K+ E ++ R KD+GF +  F CNQ 
Sbjct: 23  QPFPFDQLKGKVVLIVNVASKCGFTPQYKELEALYKRYKDEGFTIIGFPCNQF 75


>pdb|2VGL|B Chain B, Ap2 Clathrin Adaptor Core
 pdb|2JKR|B Chain B, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
           Phosphos)qikrllse
 pdb|2JKR|E Chain E, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
           Phosphos)qikrllse
 pdb|2JKT|B Chain B, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
           Phosphos)eikrllse  Q To E Mutant
 pdb|2JKT|E Chain E, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
           Phosphos)eikrllse  Q To E Mutant
          Length = 591

 Score = 31.2 bits (69), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 294 WKKLSTKHYTALLKVYADHKMLSKGKDLVKQ--MAESGCHIGPLA 336
           W+ LST   TA   V ++  ++S+  DL++   + E  CHIG LA
Sbjct: 527 WRLLSTDPVTAKEVVLSEKPLISEETDLIEPTLLDELICHIGSLA 571


>pdb|2XA7|B Chain B, Ap2 Clathrin Adaptor Core In Active Complex With Cargo
           Peptides
          Length = 592

 Score = 31.2 bits (69), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 294 WKKLSTKHYTALLKVYADHKMLSKGKDLVKQ--MAESGCHIGPLA 336
           W+ LST   TA   V ++  ++S+  DL++   + E  CHIG LA
Sbjct: 527 WRLLSTDPVTAKEVVLSEKPLISEETDLIEPTLLDELICHIGSLA 571


>pdb|2WGR|A Chain A, Combining Crystallography And Molecular Dynamics: The Case
           Of Schistosoma Mansoni Phospholipid Glutathione
           Peroxidase
          Length = 169

 Score = 29.6 bits (65), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)

Query: 88  ESFRGEVVYRTLLANCVAG---NNVKKAEEVFNRMKDKGFPVTSFACNQL 134
           E +RG V     +A C +G    N ++ +E+  R+  KG  + +F CNQ 
Sbjct: 27  EKYRGHVCLIVNVA-CKSGATDKNYRQLQEMHTRLVGKGLRILAFPCNQF 75


>pdb|2P5Q|A Chain A, Crystal Structure Of The Poplar Glutathione Peroxidase 5
           In The Reduced Form
 pdb|2P5Q|B Chain B, Crystal Structure Of The Poplar Glutathione Peroxidase 5
           In The Reduced Form
 pdb|2P5Q|C Chain C, Crystal Structure Of The Poplar Glutathione Peroxidase 5
           In The Reduced Form
 pdb|2P5Q|D Chain D, Crystal Structure Of The Poplar Glutathione Peroxidase 5
           In The Reduced Form
 pdb|2P5R|A Chain A, Crystal Structure Of The Poplar Glutathione Peroxidase 5
           In The Oxidized Form
 pdb|2P5R|B Chain B, Crystal Structure Of The Poplar Glutathione Peroxidase 5
           In The Oxidized Form
          Length = 170

 Score = 28.5 bits (62), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 90  FRGEVVYRTLLANCVAGNNVKKAE--EVFNRMKDKGFPVTSFACNQL 134
           F+G+V+    +A+     N   AE  +++ + KD+G  + +F CNQ 
Sbjct: 30  FKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQF 76


>pdb|3GB8|A Chain A, Crystal Structure Of Crm1SNURPORTIN-1 Complex
          Length = 1071

 Score = 28.5 bits (62), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 3/75 (4%)

Query: 347 GGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQ---VGYVA 403
            G++ +  S  LK    N+F  +F     +M+       +H+T +   R      +GY+ 
Sbjct: 183 SGQITQVKSKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIF 242

Query: 404 RFKQFQTLVQAYINA 418
             K   TL+  ++N 
Sbjct: 243 ETKLISTLIYKFLNV 257


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.132    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,928,014
Number of Sequences: 62578
Number of extensions: 441982
Number of successful extensions: 1083
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1081
Number of HSP's gapped (non-prelim): 7
length of query: 460
length of database: 14,973,337
effective HSP length: 102
effective length of query: 358
effective length of database: 8,590,381
effective search space: 3075356398
effective search space used: 3075356398
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)