BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012577
(460 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C977|PP135_ARATH Pentatricopeptide repeat-containing protein At1g80270,
mitochondrial OS=Arabidopsis thaliana GN=At1g80270 PE=1
SV=1
Length = 596
Score = 623 bits (1606), Expect = e-177, Method: Compositional matrix adjust.
Identities = 283/460 (61%), Positives = 379/460 (82%)
Query: 1 MDAPDISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIE 60
+ AP +SI S L K+ EEGN+++R EIA AM LR RRMYG+ALQ+SEWLE NKK++ E
Sbjct: 137 VSAPGLSIGSALDKWVEEGNEITRVEIAKAMLQLRRRRMYGRALQMSEWLEANKKIEMTE 196
Query: 61 RDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMK 120
RDYAS LDL K+RGL+K E+ +QKIP+SF+GEV+YRTLLANCVA NVKK+E VFN+MK
Sbjct: 197 RDYASRLDLTVKIRGLEKGEACMQKIPKSFKGEVLYRTLLANCVAAGNVKKSELVFNKMK 256
Query: 121 DKGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTG 180
D GFP++ F C+Q+L+L+KR+D+KK+ADVLLLMEKEN+K + +YKILID+KG +ND++G
Sbjct: 257 DLGFPLSGFTCDQMLLLHKRIDRKKIADVLLLMEKENIKPSLLTYKILIDVKGATNDISG 316
Query: 181 MDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLP 240
M+Q++E MK EG+E D TQA+ A+HY G K+KAE +LKEMEG++L+ +R + LL
Sbjct: 317 MEQILETMKDEGVELDFQTQALTARHYSGAGLKDKAEKVLKEMEGESLEANRRAFKDLLS 376
Query: 241 LYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTK 300
+YA LG+ D+V RIWK+CES P+ + +AAI+A+GKLNKV+EAEA+F+++ K ++ S+
Sbjct: 377 IYASLGREDEVKRIWKICESKPYFEESLAAIQAFGKLNKVQEAEAIFEKIVKMDRRASSS 436
Query: 301 HYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKA 360
Y+ LL+VY DHKMLSKGKDLVK+MAESGC I WDAL+KL+VE GEVEKADS+L KA
Sbjct: 437 TYSVLLRVYVDHKMLSKGKDLVKRMAESGCRIEATTWDALIKLYVEAGEVEKADSLLDKA 496
Query: 361 QQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT 420
+Q+ K M +S+M IMD+Y+KRGD+H+TEKIF +MR+ GY +R +QFQ L+QAYINAK+
Sbjct: 497 SKQSHTKLMMNSFMYIMDEYSKRGDVHNTEKIFLKMREAGYTSRLRQFQALMQAYINAKS 556
Query: 421 PAYGIRDRMRADNVFPNKALAAQVAQVDAFRKTAVSELLD 460
PAYG+RDR++ADN+FPNK++AAQ+AQ D F+KTA+S++LD
Sbjct: 557 PAYGMRDRLKADNIFPNKSMAAQLAQGDPFKKTAISDILD 596
>sp|Q9XI21|PPR44_ARATH Pentatricopeptide repeat-containing protein At1g15480,
mitochondrial OS=Arabidopsis thaliana GN=At1g15480 PE=2
SV=2
Length = 594
Score = 563 bits (1451), Expect = e-160, Method: Compositional matrix adjust.
Identities = 270/455 (59%), Positives = 365/455 (80%)
Query: 6 ISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYAS 65
+S+ S L K+ E+G D +R E AM LR RRM+G+ALQ++EWL+ NK+ + ERDYA
Sbjct: 140 LSVGSALDKWVEQGKDTNRKEFESAMLQLRKRRMFGRALQMTEWLDENKQFEMEERDYAC 199
Query: 66 CLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFP 125
LDLI+K+RG K E+YI+ IPESFRGE+VYRTLLAN VA +NV+ AE VFN+MKD GFP
Sbjct: 200 RLDLISKVRGWYKGEAYIKTIPESFRGELVYRTLLANHVATSNVRTAEAVFNKMKDLGFP 259
Query: 126 VTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVV 185
+++F CNQ+LILYKR+DKKK+ADVLLL+EKEN+K +YKILID KG SND+TGM+Q+V
Sbjct: 260 LSTFTCNQMLILYKRVDKKKIADVLLLLEKENLKPNLNTYKILIDTKGSSNDITGMEQIV 319
Query: 186 EAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAEL 245
E MKSEG+E D +A++A+HY S G KEKAE +LKEMEG++L+E+R C+ LL +Y L
Sbjct: 320 ETMKSEGVELDLRARALIARHYASAGLKEKAEKVLKEMEGESLEENRHMCKDLLSVYGYL 379
Query: 246 GKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTAL 305
+ D+V R+WK+CE NP + +AAI A+GK++KV++AEAVF+++ K ++S+ Y+ L
Sbjct: 380 QREDEVRRVWKICEENPRYNEVLAAILAFGKIDKVKDAEAVFEKVLKMSHRVSSNVYSVL 439
Query: 306 LKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNK 365
L+VY DHKM+S+GKDLVKQM++SGC+IG L WDA++KL+VE GEVEKA+S L KA Q +
Sbjct: 440 LRVYVDHKMVSEGKDLVKQMSDSGCNIGALTWDAVIKLYVEAGEVEKAESSLSKAIQSKQ 499
Query: 366 FKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKTPAYGI 425
KP+ SS+M +M +Y +RGD+H+TEKIF RM+Q GY +RF +QTL+QAY+NAK PAYG+
Sbjct: 500 IKPLMSSFMYLMHEYVRRGDVHNTEKIFQRMKQAGYQSRFWAYQTLIQAYVNAKAPAYGM 559
Query: 426 RDRMRADNVFPNKALAAQVAQVDAFRKTAVSELLD 460
++RM+ADN+FPNK LAAQ+A+ D F+KT +S+LLD
Sbjct: 560 KERMKADNIFPNKRLAAQLAKADPFKKTPLSDLLD 594
>sp|Q9LRP6|PP234_ARATH Pentatricopeptide repeat-containing protein At3g15590,
mitochondrial OS=Arabidopsis thaliana GN=At3g15590 PE=2
SV=1
Length = 610
Score = 509 bits (1312), Expect = e-143, Method: Compositional matrix adjust.
Identities = 245/454 (53%), Positives = 347/454 (76%)
Query: 7 SIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASC 66
S+ L K+ +EG DLS+AE+ LA+ NLR R+ Y LQL EWL N + +F E +YAS
Sbjct: 156 SVKHVLEKWVKEGKDLSQAEVTLAIHNLRKRKSYAMCLQLWEWLGANTQFEFTEANYASQ 215
Query: 67 LDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPV 126
LDL+AK+ LQKAE +++ IPES RGEVVYRTLLANCV ++V KAE++FN+MK+ FP
Sbjct: 216 LDLVAKVHSLQKAEIFLKDIPESSRGEVVYRTLLANCVLKHHVNKAEDIFNKMKELKFPT 275
Query: 127 TSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVE 186
+ FACNQLL+LY D+KK++DVLLLME+EN+K ++ +Y LI+ KG + D+TGM+++VE
Sbjct: 276 SVFACNQLLLLYSMHDRKKISDVLLLMERENIKPSRATYHFLINSKGLAGDITGMEKIVE 335
Query: 187 AMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELG 246
+K EGIE D Q+ILAK+Y+ G KE+A+ ++KE+EG L++ W CR LLPLYA++G
Sbjct: 336 TIKEEGIELDPELQSILAKYYIRAGLKERAQDLMKEIEGKGLQQTPWVCRSLLPLYADIG 395
Query: 247 KADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALL 306
+D V R+ + + NP D C++AI+AWGKL +VEEAEAVF+R+ + +K Y AL+
Sbjct: 396 DSDNVRRLSRFVDQNPRYDNCISAIKAWGKLKEVEEAEAVFERLVEKYKIFPMMPYFALM 455
Query: 307 KVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKF 366
++Y ++KML+KG+DLVK+M +G IGP W ALVKL+++ GEV KA+ IL +A + NK
Sbjct: 456 EIYTENKMLAKGRDLVKRMGNAGIAIGPSTWHALVKLYIKAGEVGKAELILNRATKDNKM 515
Query: 367 KPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKTPAYGIR 426
+PMF++YM I+++YAKRGD+H+TEK+F +M++ Y A+ Q++T++ AYINAKTPAYG+
Sbjct: 516 RPMFTTYMAILEEYAKRGDVHNTEKVFMKMKRASYAAQLMQYETVLLAYINAKTPAYGMI 575
Query: 427 DRMRADNVFPNKALAAQVAQVDAFRKTAVSELLD 460
+RM+ADNVFPNK+LAA++AQV+ F+K VS LLD
Sbjct: 576 ERMKADNVFPNKSLAAKLAQVNPFKKCPVSVLLD 609
>sp|O22714|PPR86_ARATH Pentatricopeptide repeat-containing protein At1g60770
OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1
Length = 491
Score = 157 bits (396), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 114/446 (25%), Positives = 217/446 (48%), Gaps = 13/446 (2%)
Query: 5 DISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYA 64
++ + L ++ + + + E+ + LR R +Y AL+LSE +E + ++ D A
Sbjct: 36 EVKVRQQLNQFLKGTKHVFKWEVGDTIKKLRNRGLYYPALKLSEVME-ERGMNKTVSDQA 94
Query: 65 SCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNV-KKAEEVFNRMKDKG 123
LDL+AK R + E+Y +PE+ + E+ Y +LL NC + +KAE + N+MK+
Sbjct: 95 IHLDLVAKAREITAGENYFVDLPETSKTELTYGSLL-NCYCKELLTEKAEGLLNKMKELN 153
Query: 124 FPVTSFACNQLLILYKRL-DKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMD 182
+S + N L+ LY + + +KV ++ ++ ENV ++Y + + +ND++G++
Sbjct: 154 ITPSSMSYNSLMTLYTKTGETEKVPAMIQELKAENVMPDSYTYNVWMRALAATNDISGVE 213
Query: 183 QVVEAMKSEG-IEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPL 241
+V+E M +G + PD +T + +A YV G +KAE L+E+E N + + L+ L
Sbjct: 214 RVIEEMNRDGRVAPDWTTYSNMASIYVDAGLSQKAEKALQELEMKNTQRDFTAYQFLITL 273
Query: 242 YAELGKADQVARIW---KLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLS 298
Y LGK +V RIW +L + I+ KLN + AE +FK
Sbjct: 274 YGRLGKLTEVYRIWRSLRLAIPKTSNVAYLNMIQVLVKLNDLPGAETLFKEWQANCSTYD 333
Query: 299 TKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILL 358
+ L+ YA ++ K +L ++ G + W+ + +V+ G++ +A +
Sbjct: 334 IRIVNVLIGAYAQEGLIQKANELKEKAPRRGGKLNAKTWEIFMDYYVKSGDMARALECMS 393
Query: 359 KA-----QQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQ 413
KA K+ P + +M + ++ D++ E + ++ + F+ L++
Sbjct: 394 KAVSIGKGDGGKWLPSPETVRALMSYFEQKKDVNGAENLLEILKNGTDNIGAEIFEPLIR 453
Query: 414 AYINAKTPAYGIRDRMRADNVFPNKA 439
Y A +R R++ +NV N+A
Sbjct: 454 TYAAAGKSHPAMRRRLKMENVEVNEA 479
>sp|Q8LPS6|PPR3_ARATH Pentatricopeptide repeat-containing protein At1g02150
OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2
Length = 524
Score = 146 bits (368), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 106/413 (25%), Positives = 194/413 (46%), Gaps = 17/413 (4%)
Query: 1 MDAPDISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLET-NKKLDFI 59
M+ P++ S L ++ + G L++ E+ + LR + +AL++ +W+ ++
Sbjct: 76 MEKPELGAASVLNQWEKAGRKLTKWELCRVVKELRKYKRANQALEVYDWMNNRGERFRLS 135
Query: 60 ERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRM 119
D A LDLI K+RG+ AE + ++PE+F+ VY +LL V + +KAE + N M
Sbjct: 136 ASDAAIQLDLIGKVRGIPDAEEFFLQLPENFKDRRVYGSLLNAYVRAKSREKAEALLNTM 195
Query: 120 KDKGFPVTSFACNQLLILYKRLDKKKVADVLLL-MEKENVKLTQFSYKILIDIKGQSNDL 178
+DKG+ + N ++ LY L + D ++ M++++++L +SY I + G +
Sbjct: 196 RDKGYALHPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSSCGSLGSV 255
Query: 179 TGMDQVVEAMKSE-GIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRL 237
M+ V + MKS+ I P+ +T + +A Y+ G EKAE L+++E +R
Sbjct: 256 EKMELVYQQMKSDVSIYPNWTTFSTMATMYIKMGETEKAEDALRKVEARITGRNRIPYHY 315
Query: 238 LLPLYAELGKADQVARIW----KLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKT 293
LL LY LG ++ R+W + S P L A + + ++ +E AE V++
Sbjct: 316 LLSLYGSLGNKKELYRVWHVYKSVVPSIPNLGY-HALVSSLVRMGDIEGAEKVYEEWLPV 374
Query: 294 WKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKA 353
+ L+ Y + L + L M E G W+ L H + +A
Sbjct: 375 KSSYDPRIPNLLMNAYVKNDQLETAEGLFDHMVEMGGKPSSSTWEILAVGHTRKRCISEA 434
Query: 354 DSIL---LKAQQQNKFKP---MFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG 400
+ L A+ + ++P M S + + ++ D+ S E + +RQ G
Sbjct: 435 LTCLRNAFSAEGSSNWRPKVLMLSGFFKLCEE---ESDVTSKEAVLELLRQSG 484
>sp|Q84JR3|PP334_ARATH Pentatricopeptide repeat-containing protein At4g21705,
mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2
SV=1
Length = 492
Score = 142 bits (358), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 112/427 (26%), Positives = 199/427 (46%), Gaps = 20/427 (4%)
Query: 4 PDISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDY 63
P S++ L + + G +S AE+ + +LR R+ + AL++S+W+ F ++
Sbjct: 37 PKSSVYPELQNWVQCGKKVSVAELIRIVHDLRRRKRFLHALEVSKWMNETGVCVFSPTEH 96
Query: 64 ASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKG 123
A LDLI ++ G AE Y + + E ++ + Y LL V NV+K+ F +MK+ G
Sbjct: 97 AVHLDLIGRVYGFVTAEEYFENLKEQYKNDKTYGALLNCYVRQQNVEKSLLHFEKMKEMG 156
Query: 124 FPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMD 182
F +S N ++ LY + + +KV VL M++ENV +SY+I I+ G DL +
Sbjct: 157 FVTSSLTYNNIMCLYTNIGQHEKVPKVLEEMKEENVAPDNYSYRICINAFGAMYDLERIG 216
Query: 183 QVVEAM-KSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPL 241
+ M + + I D +T A+ AK Y+ GG ++A +LK E K+ L+ L
Sbjct: 217 GTLRDMERRQDITMDWNTYAVAAKFYIDGGDCDRAVELLKMSENRLEKKDGEGYNHLITL 276
Query: 242 YAELGKADQVARIWKLCESNPWLDVC--------MAAIEAWGKLNKVEEAEAVFKRMSKT 293
YA LGK +V R+W L + DVC + +++ K++ + EAE V +
Sbjct: 277 YARLGKKIEVLRLWDLEK-----DVCKRRINQDYLTVLQSLVKIDALVEAEEVLTEWKSS 331
Query: 294 WKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKA 353
+ +++ Y M K + +++ +A G P +W+ + + E G +E A
Sbjct: 332 GNCYDFRVPNTVIRGYIGKSMEEKAEAMLEDLARRGKATTPESWELVATAYAEKGTLENA 391
Query: 354 DSILLKA----QQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQ 409
+ A K++P + ++ G + E +R V + + +
Sbjct: 392 FKCMKTALGVEVGSRKWRPGLTLVTSVLSWVGDEGSLKEVESFVASLRNCIGVNK-QMYH 450
Query: 410 TLVQAYI 416
LV+A I
Sbjct: 451 ALVKADI 457
>sp|Q940Q2|PPR19_ARATH Pentatricopeptide repeat-containing protein At1g07590,
mitochondrial OS=Arabidopsis thaliana GN=At1g07590 PE=2
SV=1
Length = 534
Score = 137 bits (344), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 103/446 (23%), Positives = 206/446 (46%), Gaps = 19/446 (4%)
Query: 6 ISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYAS 65
+++ S L + +G + ++ A+ LR +AL+L EW+ + E +Y+
Sbjct: 79 VTVGSALQSWMGDGFPVHGGDVYHAINRLRKLGRNKRALELMEWIIRERPYRLGELEYSY 138
Query: 66 CLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFP 125
L+ KL G+ + E ++P+ F+ E++Y L+ C+ ++ A E +M++ G+
Sbjct: 139 LLEFTVKLHGVSQGEKLFTRVPQEFQNELLYNNLVIACLDQGVIRLALEYMKKMRELGYR 198
Query: 126 VTSFACNQLLILYKRLDKKK-VADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQV 184
+ N+L+I ++K +A L LM+ + +Y IL+ ++ +++ G+ +
Sbjct: 199 TSHLVYNRLIIRNSAPGRRKLIAKDLALMKADKATPHVSTYHILMKLEANEHNIDGVLKA 258
Query: 185 VEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEME----GDNLKEHRW-TCRLLL 239
+ MK G+EP+ + ILA + AEA +E+E GDN W T +L+
Sbjct: 259 FDGMKKAGVEPNEVSYCILAMAHAVARLYTVAEAYTEEIEKSITGDN-----WSTLDILM 313
Query: 240 PLYAELGKADQVARIWKLCESNPWL--DVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKL 297
LY LGK ++AR W + + + A EA+ ++ ++ AE ++ M
Sbjct: 314 ILYGRLGKEKELARTWNVIRGFHHVRSKSYLLATEAFARVGNLDRAEELWLEMKNVKGLK 373
Query: 298 STKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDAL------VKLHVEGGEVE 351
T+ + +LL VY ++ K + ++M +G + + L KL E +
Sbjct: 374 ETEQFNSLLSVYCKDGLIEKAIGVFREMTGNGFKPNSITYRHLALGCAKAKLMKEALKNI 433
Query: 352 KADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTL 411
+ L ++ P + + I++ +A++GD+ ++EK+F ++ Y + L
Sbjct: 434 EMGLNLKTSKSIGSSTPWLETTLSIIECFAEKGDVENSEKLFEEVKNAKYNRYAFVYNAL 493
Query: 412 VQAYINAKTPAYGIRDRMRADNVFPN 437
+AY+ AK + RM P+
Sbjct: 494 FKAYVKAKVYDPNLFKRMVLGGARPD 519
>sp|Q9SY07|PP302_ARATH Pentatricopeptide repeat-containing protein At4g02820,
mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2
SV=1
Length = 532
Score = 135 bits (341), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 113/461 (24%), Positives = 212/461 (45%), Gaps = 21/461 (4%)
Query: 11 TLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLI 70
T+ K+ EEG+ + + E+ + LR + Y AL++ EW+ + + DYA LDLI
Sbjct: 80 TIRKWKEEGHSVRKYELNRIVRELRKIKRYKHALEICEWMVVQEDIKLQAGDYAVHLDLI 139
Query: 71 AKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFA 130
+K+RGL AE + + +P+ RG +LL + V KAE +F +M + GF +
Sbjct: 140 SKIRGLNSAEKFFEDMPDQMRGHAACTSLLHSYVQNKLSDKAEALFEKMGECGFLKSCLP 199
Query: 131 CNQLLILYKRLDKKKVADVLLLMEKENVKLTQ--FSYKILIDIKGQSNDLTGMDQVVEAM 188
N +L +Y + + + V +L+++ ++ + +Y + + ND+ G ++V
Sbjct: 200 YNHMLSMY--ISRGQFEKVPVLIKELKIRTSPDIVTYNLWLTAFASGNDVEGAEKVYLKA 257
Query: 189 KSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKA 248
K E + PD T ++L Y EKA LKEME K++R L+ L+A LG
Sbjct: 258 KEEKLNPDWVTYSVLTNLYAKTDNVEKARLALKEMEKLVSKKNRVAYASLISLHANLGDK 317
Query: 249 DQVARIWKLCESN-------PWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKH 301
D V WK +S+ +L + A + KL + E+A+ ++ +
Sbjct: 318 DGVNLTWKKVKSSFKKMNDAEYLSMISAVV----KLGEFEQAKGLYDEWESVSGTGDARI 373
Query: 302 YTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQ 361
+L Y + + G+ +++ E G + W+ L +++ ++EK KA
Sbjct: 374 PNLILAEYMNRDEVLLGEKFYERIVEKGINPSYSTWEILTWAYLKRKDMEKVLDCFGKA- 432
Query: 362 QQNKFKPMFSSYMLI---MDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINA 418
+ K + L+ + ++G++ EK+ +++ GYV + + +L++ Y A
Sbjct: 433 -IDSVKKWTVNVRLVKGACKELEEQGNVKGAEKLMTLLQKAGYV-NTQLYNSLLRTYAKA 490
Query: 419 KTPAYGIRDRMRADNVFPNKALAAQVAQVDAFRKTAVSELL 459
A + +RM DNV ++ + R T +S +
Sbjct: 491 GEMALIVEERMAKDNVELDEETKELIRLTSQMRVTEISSTI 531
>sp|Q3E911|PP400_ARATH Pentatricopeptide repeat-containing protein At5g27460
OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1
Length = 491
Score = 126 bits (317), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 117/443 (26%), Positives = 205/443 (46%), Gaps = 13/443 (2%)
Query: 2 DAPDISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIER 61
+ P S+ S L + + G+ +S +E+ L L Y ALQ+ EW+E K ++F
Sbjct: 48 NGPRRSVTSLLQERIDSGHAVSLSELRLISKRLIRSNRYDLALQMMEWMENQKDIEFSVY 107
Query: 62 DYASCLDLIAKLRGLQKAESYIQKIPESFRGEVV----YRTLLANCVAGNNVKKAEEVFN 117
D A LDLI K GL++ E Y +K+ S V Y LL V VK+AE +
Sbjct: 108 DIALRLDLIIKTHGLKQGEEYFEKLLHSSVSMRVAKSAYLPLLRAYVKNKMVKEAEALME 167
Query: 118 RMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSN 176
++ GF VT N+++ LY+ + +KV V+ +M+ + SY + ++ + +
Sbjct: 168 KLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMKGNKIPRNVLSYNLWMNACCEVS 227
Query: 177 DLTGMDQVVEAMKSE-GIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTC 235
+ ++ V + M + +E S+ LA Y+ G EKA +L++ E + +R
Sbjct: 228 GVAAVETVYKEMVGDKSVEVGWSSLCTLANVYIKSGFDEKARLVLEDAEKMLNRSNRLGY 287
Query: 236 RLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNK---VEEAEAVFKRMSK 292
L+ LYA LG + V R+W++ +S C+ I L K +EEAE VF
Sbjct: 288 FFLITLYASLGNKEGVVRLWEVSKSVCGRISCVNYICVLSSLVKTGDLEEAERVFSEWEA 347
Query: 293 TWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEK 352
+ LL Y + + K + L + E G W+ L++ V+ +EK
Sbjct: 348 QCFNYDVRVSNVLLGAYVRNGEIRKAESLHGCVLERGGTPNYKTWEILMEGWVKCENMEK 407
Query: 353 A-DSI--LLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQ 409
A D++ + ++ ++P + M I + + K I + ++G +A ++
Sbjct: 408 AIDAMHQVFVLMRRCHWRPSHNIVMAIAEYFEKEEKIEEATAYVRDLHRLG-LASLPLYR 466
Query: 410 TLVQAYINAKTPAYGIRDRMRAD 432
L++ + +AK PAY I + M+ D
Sbjct: 467 LLLRMHEHAKRPAYDIYEMMKLD 489
>sp|Q9SKU6|PP166_ARATH Pentatricopeptide repeat-containing protein At2g20710,
mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2
SV=1
Length = 490
Score = 125 bits (314), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 112/408 (27%), Positives = 192/408 (47%), Gaps = 9/408 (2%)
Query: 4 PDISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDY 63
P SI L + ++GN + +E+ + LR + ALQ+S+W+ ++ + E D
Sbjct: 50 PSASIIKVLDGWLDQGNLVKTSELHSIIKMLRKFSRFSHALQISDWMSEHRVHEISEGDV 109
Query: 64 ASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNV-KKAEEVFNRMKDK 122
A LDLIAK+ GL +AE + + IP R +Y LL NC A V KAE+VF MK+
Sbjct: 110 AIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALL-NCYASKKVLHKAEQVFQEMKEL 168
Query: 123 GFPVTSFACNQLLILYKRLDKKKVADVLLL-MEKENVKLTQFSYKILIDIKGQSNDLTGM 181
GF N +L LY R K + + LL ME E VK F+ + +D+ GM
Sbjct: 169 GFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTRLHAYSVVSDVEGM 228
Query: 182 DQ-VVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEG-DNLKEHRWTCRLLL 239
++ ++ +G+ D T A A Y+ G EKA ML++ E N ++ + +L+
Sbjct: 229 EKFLMRCEADQGLHLDWRTYADTANGYIKAGLTEKALEMLRKSEQMVNAQKRKHAYEVLM 288
Query: 240 PLYAELGKADQVARIWKLC-ESNPWLDVC-MAAIEAWGKLNKVEEAEAVFKRMSKTWKKL 297
Y GK ++V R+W L E + + + ++ I A K++ +EE E + +
Sbjct: 289 SFYGAAGKKEEVYRLWSLYKELDGFYNTGYISVISALLKMDDIEEVEKIMEEWEAGHSLF 348
Query: 298 STKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSIL 357
+ L+ Y M+ K +++V + + W+ L + G++EKA
Sbjct: 349 DIRIPHLLITGYCKKGMMEKAEEVVNILVQKWRVEDTSTWERLALGYKMAGKMEKAVEKW 408
Query: 358 LKAQQQNK--FKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVA 403
+A + +K ++P M +D + D+ KI + + G+++
Sbjct: 409 KRAIEVSKPGWRPHQVVLMSCVDYLEGQRDMEGLRKILRLLSERGHIS 456
>sp|Q93WC5|PP300_ARATH Pentatricopeptide repeat-containing protein At4g01990,
mitochondrial OS=Arabidopsis thaliana GN=At4g01990 PE=2
SV=1
Length = 502
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 96/321 (29%), Positives = 153/321 (47%), Gaps = 43/321 (13%)
Query: 8 IHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCL 67
+ TL ++ EG + + ++ +LR R +AL++ EW+E K++ F D+A L
Sbjct: 56 MEETLNQFVMEGVPVKKHDLIRYAKDLRKFRQPQRALEIFEWME-RKEIAFTGSDHAIRL 114
Query: 68 DLIAKLRGLQKAESYIQKIPESFRGEVVYRTLL-ANCVAGNNVKKAEEVFNRMKDKGFPV 126
+LIAK +GL+ AE+Y + +S + + Y +LL CV V KA+ F M D
Sbjct: 115 NLIAKSKGLEAAETYFNSLDDSIKNQSTYGSLLNCYCVEKEEV-KAKAHFENMVDLNHVS 173
Query: 127 TSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVV 185
S N L+ +Y L + +KV +++ M+++++ +Y + I G DL G+++V+
Sbjct: 174 NSLPFNNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYSMWIQSCGSLKDLDGVEKVL 233
Query: 186 EAMKSEGIEPDS-STQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAE 244
+ MK+EG S +T A LA Y+ G KAE LK +E + + R L+ LY
Sbjct: 234 DEMKAEGEGIFSWNTFANLAAIYIKVGLYGKAEEALKSLENNMNPDVRDCYHFLINLYTG 293
Query: 245 LGKADQVARIWKLC-----------------------------------ESNPW-LDVCM 268
+ A +V R+W L ES W D+ M
Sbjct: 294 IANASEVYRVWDLLKKRYPNVNNSSYLTMLRALSKLDDIDGVKKVFAEWESTCWTYDMRM 353
Query: 269 A--AIEAWGKLNKVEEAEAVF 287
A AI ++ K N EEAEAVF
Sbjct: 354 ANVAISSYLKQNMYEEAEAVF 374
>sp|Q9C7F1|PPR61_ARATH Putative pentatricopeptide repeat-containing protein At1g28020
OS=Arabidopsis thaliana GN=At1g28020 PE=3 SV=2
Length = 566
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 87/326 (26%), Positives = 161/326 (49%), Gaps = 15/326 (4%)
Query: 8 IHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCL 67
I L ++ ++GN ++ + + + + LR +ALQ+SEW+ K + I D+A+ L
Sbjct: 52 IIPVLEQWRQQGNQVNPSHVRVIIKKLRDSDQSLQALQVSEWMSKEKICNLIPEDFAARL 111
Query: 68 DLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGN-NVKKAEEVFNRMKDKGFPV 126
LI + GL++AE + + IP++ RG+ VY +LL + + + KAE F +M+D G +
Sbjct: 112 HLIENVVGLEEAEKFFESIPKNARGDSVYTSLLNSYARSDKTLCKAEATFQKMRDLGLLL 171
Query: 127 TSFACNQLLILYKRL-DKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVV 185
N ++ LY L +++KV ++LL M+ +V+ + ++ + D+T M++ +
Sbjct: 172 RPVPYNAMMSLYSALKNREKVEELLLEMKDNDVEADNVTVNNVLKLYSAVCDVTEMEKFL 231
Query: 186 EAMKS-EGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEG-DNLKEHRWTCRLLLPLYA 243
+ GI+ + T +AK Y+ KA ML+ E + K + L+ LY
Sbjct: 232 NKWEGIHGIKLEWHTTLDMAKAYLRARSSGKAMKMLRLTEQLVDQKSLKSAYDHLMKLYG 291
Query: 244 ELGKADQVARIWKLCES-------NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKK 296
E G ++V R+WKL +S N + V + + K++ + AE ++K +
Sbjct: 292 EAGNREEVLRVWKLYKSKIGERDNNGYRTVIRSLL----KVDDIVGAEEIYKVWESLPLE 347
Query: 297 LSTKHYTALLKVYADHKMLSKGKDLV 322
+ T L Y D M K + L+
Sbjct: 348 FDHRIPTMLASGYRDRGMTEKAEKLM 373
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 8/125 (6%)
Query: 19 GNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQK 78
G+ + +++ + NLR + + KALQ+SEW+ + + DYA+ L L + GL++
Sbjct: 395 GDQMKPSDLKCLIKNLRDSKQFSKALQVSEWMGEKQVCNLYLEDYAARLYLTENVLGLEE 454
Query: 79 AESYIQKIPESFRGEVVYRTLLANCVA-----GNNVKKAEEVFNRMKDKGFPVTSFACNQ 133
AE Y + IPE+ + VY LL++ GN V +E+ M++ N
Sbjct: 455 AEKYFENIPENMKDYSVYVALLSSYAKSDKNLGNMV---DEILREMEENNVDPDLITVNH 511
Query: 134 LLILY 138
+L +Y
Sbjct: 512 VLKVY 516
>sp|Q9FZ24|PPR4_ARATH Pentatricopeptide repeat-containing protein At1g02370,
mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2
SV=1
Length = 537
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/295 (27%), Positives = 144/295 (48%), Gaps = 8/295 (2%)
Query: 7 SIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASC 66
++ TL ++ EG + + ++ LR R A ++ +W+E +K+ F D+A C
Sbjct: 86 TVAETLNQFIMEGITVRKDDLFRCAKTLRKFRRPQHAFEIFDWME-KRKMTFSVSDHAIC 144
Query: 67 LDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGN-NVKKAEEVFNRMKDKGFP 125
LDLI K +GL+ AE+Y + S + L NC +KA+ F M + F
Sbjct: 145 LDLIGKTKGLEAAENYFNNLDPSAKNHQSTYGALMNCYCVELEEEKAKAHFEIMDELNFV 204
Query: 126 VTSFACNQLLILYKRLDKKKVADVLL-LMEKENVKLTQFSYKILIDIKGQSNDLTGMDQV 184
S N ++ +Y RL + + VL+ M++ + +Y I + G NDL G++++
Sbjct: 205 NNSLPFNNMMSMYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIWMQSCGSLNDLDGLEKI 264
Query: 185 VEAM-KSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYA 243
++ M K + +T + LA Y G EKA++ LK ME +R + L+ LYA
Sbjct: 265 IDEMGKDSEAKTTWNTFSNLAAIYTKAGLYEKADSALKSMEEKMNPNNRDSHHFLMSLYA 324
Query: 244 ELGKADQVARIWK-LCESNPWLD--VCMAAIEAWGKLNKVEEAEAVFKRM-SKTW 294
+ K +V R+W+ L ++ P ++ + ++A KL ++ + +F SK W
Sbjct: 325 GISKGPEVYRVWESLKKARPEVNNLSYLVMLQAMSKLGDLDGIKKIFTEWESKCW 379
Score = 42.0 bits (97), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 68/318 (21%), Positives = 127/318 (39%), Gaps = 30/318 (9%)
Query: 91 RGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTS---FACNQLLILYKRLDKKKVA 147
R +Y+ L V G V E N+ +G V F C + L ++R +
Sbjct: 69 RQRELYKKLSMLSVTGGTVA---ETLNQFIMEGITVRKDDLFRCAKTLRKFRR--PQHAF 123
Query: 148 DVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHY 207
++ MEK + + + I +D+ G++ L + + + ST L Y
Sbjct: 124 EIFDWMEKRKMTFSVSDHAICLDLIGKTKGLEAAENYFNNLDPSA-KNHQSTYGALMNCY 182
Query: 208 VSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVC 267
+EKA+A + M+ N + ++ +Y L + ++V + + + C
Sbjct: 183 CVELEEEKAKAHFEIMDELNFVNNSLPFNNMMSMYMRLSQPEKVPVLVDAMKQRG-ISPC 241
Query: 268 MAAIEAW----GKLNKVEEAEAVFKRMSK-TWKKLSTKHYTALLKVYADHKMLSKGKDLV 322
W G LN ++ E + M K + K + ++ L +Y + K +
Sbjct: 242 GVTYSIWMQSCGSLNDLDGLEKIIDEMGKDSEAKTTWNTFSNLAAIYTKAGLYEKADSAL 301
Query: 323 KQMAESGCHIGPLAWDA---LVKLHV---EGGEVEKADSILLKAQQQ-NKFKPMFSSYML 375
K M E + P D+ L+ L+ +G EV + L KA+ + N SY++
Sbjct: 302 KSMEE---KMNPNNRDSHHFLMSLYAGISKGPEVYRVWESLKKARPEVNNL-----SYLV 353
Query: 376 IMDQYAKRGDIHSTEKIF 393
++ +K GD+ +KIF
Sbjct: 354 MLQAMSKLGDLDGIKKIF 371
>sp|Q94B59|PP372_ARATH Pentatricopeptide repeat-containing protein At5g09450,
mitochondrial OS=Arabidopsis thaliana GN=At5g09450 PE=2
SV=1
Length = 409
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 81/338 (23%), Positives = 163/338 (48%), Gaps = 19/338 (5%)
Query: 4 PDISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDY 63
P S + L K+ EGN ++ E+ LR R Y AL+++EW+ +++ + DY
Sbjct: 67 PKRSATTVLEKWIGEGNQMTINELREISKELRRTRRYKHALEVTEWMVQHEESKISDADY 126
Query: 64 ASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNR-MKDK 122
AS +DLI+K+ G+ AE Y + + + Y +LL A ++AE +F R ++
Sbjct: 127 ASRIDLISKVFGIDAAERYFEGLDIDSKTAETYTSLLHAYAASKQTERAEALFKRIIESD 186
Query: 123 GFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGM 181
+ N+++ LY + + +KV +V+ +++++ V F+Y + + + ++ +
Sbjct: 187 SLTFGAITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNLWLSSCAATFNIDEL 246
Query: 182 DQVVEAMKSEGIEPDSSTQAI-LAKHYVSGGRKEKAEAMLKEMEGDNLKEHRW-TCRLLL 239
+++E M+ + + + I L Y++ R AE+ L ++ + W T L+
Sbjct: 247 RKILEEMRHDASSNEGWVRYIDLTSIYINSSRVTNAESTLPVEAEKSISQREWITYDFLM 306
Query: 240 PLYAELGKADQVARIWK-LCESNPWLD----VCMAAIEAWGKLNKVEEAEAVFKRMSKTW 294
L+ LG + +IWK L +N L +C+ + ++ L + EAE + + W
Sbjct: 307 ILHTGLGNKVMIDQIWKSLRNTNQILSSRSYICV--LSSYLMLGHLREAEEIIHQ----W 360
Query: 295 KKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHI 332
K+ T + A A ++L+ +D+ + SG H+
Sbjct: 361 KESKTTEFDA----SACLRILNAFRDVGLEGIASGFHL 394
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 108/262 (41%), Gaps = 27/262 (10%)
Query: 152 LMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAI---LAKHYV 208
+++ E K++ Y ID+ + + G+D EG++ DS T L Y
Sbjct: 113 MVQHEESKISDADYASRIDLISK---VFGIDAAERYF--EGLDIDSKTAETYTSLLHAYA 167
Query: 209 SGGRKEKAEAMLKEM-EGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES------- 260
+ + E+AEA+ K + E D+L T ++ LY +G+ ++V + ++ +
Sbjct: 168 ASKQTERAEALFKRIIESDSLTFGAITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDI 227
Query: 261 ---NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSK 317
N WL C A +L K+ E ++ W + Y L +Y + ++
Sbjct: 228 FTYNLWLSSCAATFNI-DELRKILEEMRHDASSNEGWVR-----YIDLTSIYINSSRVTN 281
Query: 318 GKDLVKQMAE-SGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLI 376
+ + AE S + +D L+ LH G D I + N+ SY+ +
Sbjct: 282 AESTLPVEAEKSISQREWITYDFLMILHTGLGNKVMIDQIWKSLRNTNQILSS-RSYICV 340
Query: 377 MDQYAKRGDIHSTEKIFHRMRQ 398
+ Y G + E+I H+ ++
Sbjct: 341 LSSYLMLGHLREAEEIIHQWKE 362
>sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protein At5g21222
OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1
Length = 831
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 95/410 (23%), Positives = 179/410 (43%), Gaps = 31/410 (7%)
Query: 60 ERDYASCLDLIAKL--RGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFN 117
++ + S L LI+K+ GL+ P++ +++ ++ N+ +A ++F
Sbjct: 367 QKHFHSLLSLISKVEKNGLK---------PDT----ILFNAIINASSESGNLDQAMKIFE 413
Query: 118 RMKDKGFPVTSFACNQLLILYKRLDKKKVADVLL--LMEKENVKLTQFSYKILIDIKGQS 175
+MK+ G T+ N L+ Y ++ K + + LL ++ E ++ + IL+
Sbjct: 414 KMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQ 473
Query: 176 NDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAML-KEMEGDNLKEHRWT 234
+ +V M+S G++PD T LAK Y G AE M+ M + +K + T
Sbjct: 474 RKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRT 533
Query: 235 CRLLLPLYAELGKADQVARIW---KLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMS 291
C ++ Y E GK ++ R + K +P L V + I+ + +N ++ V M
Sbjct: 534 CGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLME 593
Query: 292 KTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVE 351
+ K ++ L+ ++ + + +++ M E G A+ L K + GE E
Sbjct: 594 EFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPE 653
Query: 352 KADSILLKAQQQNKF--KPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQ-VGYVARFKQF 408
KA+ IL Q KF +P Y I+ + G++ +++ +M VG +
Sbjct: 654 KAEQIL---NQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIVGLSPNLTTY 710
Query: 409 QTLVQAYINAKTP--AYGIRDRMRADNVFPNKALAAQVAQVDAFRKTAVS 456
+TL+ + AK P A + M NV P + +A D ++ VS
Sbjct: 711 ETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRKTMQLIA--DGWKSIGVS 758
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/238 (19%), Positives = 104/238 (43%), Gaps = 4/238 (1%)
Query: 184 VVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYA 243
+ + EG +P T L +++ ++E + LK ++ +
Sbjct: 341 IFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASS 400
Query: 244 ELGKADQVARIW-KLCESN--PWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKT-WKKLST 299
E G DQ +I+ K+ ES P I+ +GK+ K+EE+ + M + + +
Sbjct: 401 ESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPND 460
Query: 300 KHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLK 359
+ L++ + + + + + ++V +M G + ++ L K + G A+ +++
Sbjct: 461 RTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIP 520
Query: 360 AQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYIN 417
NK KP + I++ Y + G + + F+RM+++G F +L++ ++N
Sbjct: 521 RMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLN 578
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 73/162 (45%), Gaps = 4/162 (2%)
Query: 279 KVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWD 338
+ +EA ++F + + K S YT L+ K L+ ++ ++G + ++
Sbjct: 334 RPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFN 393
Query: 339 ALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRM-R 397
A++ E G +++A I K ++ KP S++ ++ Y K G + + ++ M R
Sbjct: 394 AIINASSESGNLDQAMKIFEKMKESG-CKPTASTFNTLIKGYGKIGKLEESSRLLDMMLR 452
Query: 398 QVGYVARFKQFQTLVQAYINAK--TPAYGIRDRMRADNVFPN 437
+ LVQA+ N + A+ I +M++ V P+
Sbjct: 453 DEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPD 494
>sp|O82178|PP186_ARATH Pentatricopeptide repeat-containing protein At2g35130
OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1
Length = 591
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 91/402 (22%), Positives = 192/402 (47%), Gaps = 31/402 (7%)
Query: 34 LRTRRMYGKALQLSEWL--ETNKKLDFIERDYASCLDLIAKLRG----LQKAES-YIQKI 86
LR + + + + EW+ +++ + D I C +L+ G ++AES Y+Q +
Sbjct: 129 LRLNKKWDSIILVCEWILRKSSFQPDVI------CFNLLIDAYGQKFQYKEAESLYVQLL 182
Query: 87 PESF-RGEVVYRTLL-ANCVAGNNVKKAEEVFNRMKD-----KGFPVTSFACNQLLILYK 139
+ E Y L+ A C+AG +++AE V M++ K VT + ++ +
Sbjct: 183 ESRYVPTEDTYALLIKAYCMAGL-IERAEVVLVEMQNHHVSPKTIGVTVYNAYIEGLMKR 241
Query: 140 RLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSST 199
+ + ++ DV M+++ K T +Y ++I++ G+++ ++ M+S +P+ T
Sbjct: 242 KGNTEEAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICT 301
Query: 200 QAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKL-- 257
L + G EKAE + ++++ D L+ + L+ Y+ G A I+ L
Sbjct: 302 YTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQ 361
Query: 258 ---CESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKM 314
CE + M ++A+G+ +AEAVF+ M + + K + LL Y+ +
Sbjct: 362 HMGCEPDRASYNIM--VDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARD 419
Query: 315 LSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQN-KFKPMFSSY 373
++K + +VK+M+E+G ++++ L+ G+ K + IL A+ +N S+Y
Sbjct: 420 VTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKIL--AEMENGPCTADISTY 477
Query: 374 MLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAY 415
++++ Y K G + E++F +++ + + + + AY
Sbjct: 478 NILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAY 519
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 123/271 (45%), Gaps = 17/271 (6%)
Query: 98 TLLANCVAGNNV-KKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKK-KVADVLLLMEK 155
T L N A + +KAEE+F ++++ G + N L+ Y R A++ LM+
Sbjct: 303 TALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQH 362
Query: 156 ENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEK 215
+ + SY I++D G++ + + V E MK GI P + +L Y K
Sbjct: 363 MGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTK 422
Query: 216 AEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWG 275
EA++KEM + ++ + +L LY LG+ ++ +I E+ P C A I +
Sbjct: 423 CEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGP----CTADISTYN 478
Query: 276 KLNKVEEAEAVFKRMSKTWKKLSTKHY-------TALLKVYADHKMLSKGKDLVKQMAES 328
L + +R+ + + +L K++ T+ + Y+ K+ K ++ ++M +S
Sbjct: 479 ILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLEVFEEMIDS 538
Query: 329 GCHIGPLAWDALVKLHVEGGE--VEKADSIL 357
GC P A V L E VE+ S+L
Sbjct: 539 GC--APDGGTAKVLLSACSSEEQVEQVTSVL 567
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 85.9 bits (211), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 86/365 (23%), Positives = 157/365 (43%), Gaps = 14/365 (3%)
Query: 63 YASCLDLIAKLRGLQKAESYIQKIP-ESFRGEVVYRTLLAN--CVAGNNVKKAEEVFNRM 119
Y + LD + R L + + ++ + +VV T+L + C AGN +A + + M
Sbjct: 331 YITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGN-FGEAFDTLDVM 389
Query: 120 KDKGFPVTSFACNQLLILYKRLDKKKVADVLLL---MEKENVKLTQFSYKILIDIKGQSN 176
+D+G N L+ R+ ++ D L L ME VK T ++Y + ID G+S
Sbjct: 390 RDQGILPNLHTYNTLICGLLRV--HRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSG 447
Query: 177 DLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCR 236
D + E MK++GI P+ GR +A+ + ++ L T
Sbjct: 448 DSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYN 507
Query: 237 LLLPLYAELGKADQVARIWKLCESN---PWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKT 293
+++ Y+++G+ D+ ++ N P + V + I K ++V+EA +F RM +
Sbjct: 508 MMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEM 567
Query: 294 WKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKA 353
K + Y LL + + + +L + M + GC + ++ L + EV A
Sbjct: 568 KLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLA 627
Query: 354 DSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQ 413
+L K +F+ Y I+ K G + FH+M+++ Y F TL+
Sbjct: 628 LKMLFKMMDMGCVPDVFT-YNTIIFGLVKNGQVKEAMCFFHQMKKLVY-PDFVTLCTLLP 685
Query: 414 AYINA 418
+ A
Sbjct: 686 GVVKA 690
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/350 (20%), Positives = 139/350 (39%), Gaps = 12/350 (3%)
Query: 107 NNVKKAEEVFNRM-KDKGFPVTSFACNQLLILYKRLDKKKVA-DVLLLMEKENVKLTQFS 164
NNV A +F + KD G N L+ D ++A DV L ++ +
Sbjct: 763 NNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVAT 822
Query: 165 YKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEME 224
Y L+D G+S + + ++ + M + E ++ T I+ V G + A + ++
Sbjct: 823 YNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLM 882
Query: 225 GDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES------NPWLDVCMAAIEAWGKLN 278
D ++ T PL L K+ ++ +L E P + I +GK
Sbjct: 883 SD--RDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAG 940
Query: 279 KVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWD 338
+ + A A+FKRM K + K Y+ L+ + +G K++ ESG + + ++
Sbjct: 941 EADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYN 1000
Query: 339 ALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQ 398
++ + +E+A + + + P +Y ++ G + KI++ +++
Sbjct: 1001 LIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQR 1060
Query: 399 VGYVARFKQFQTLVQAYINAKTP--AYGIRDRMRADNVFPNKALAAQVAQ 446
G F L++ Y + P AY + M PN Q+
Sbjct: 1061 AGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQLPN 1110
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/355 (19%), Positives = 144/355 (40%), Gaps = 7/355 (1%)
Query: 63 YASCLDLIAKLRGLQKAESYIQKIPESFRGE--VVYRTLLANCVAGNNVKKAEEVFNRMK 120
+ C+ ++ + + +A ++++ + G V Y L+ + A+EVF +MK
Sbjct: 261 FTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMK 320
Query: 121 DKGFPVTSFACNQLLILYK-RLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLT 179
LL + D V MEK+ ++ IL+D ++ +
Sbjct: 321 TGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFG 380
Query: 180 GMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLL 239
++ M+ +GI P+ T L + R + A + ME +K +T + +
Sbjct: 381 EAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFI 440
Query: 240 PLYAELGKADQVARIWKLCESN---PWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKK 296
Y + G + ++ ++ P + C A++ + K + EA+ +F +
Sbjct: 441 DYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLV 500
Query: 297 LSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSI 356
+ Y ++K Y+ + + L+ +M E+GC + ++L+ + V++A +
Sbjct: 501 PDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKM 560
Query: 357 LLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTL 411
++ ++ K KP +Y ++ K G I ++F M Q G F TL
Sbjct: 561 FMRMKEM-KLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTL 614
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 113/262 (43%), Gaps = 6/262 (2%)
Query: 181 MDQVVEAMKSEGIEPDSSTQAILAKHY-VSGGRKEKAEAMLKEME-GDNLKEHRWTCRLL 238
M V + M+ I+ D++T + K V GG K+ A+ K E G L + + +
Sbjct: 137 MAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIH 196
Query: 239 LPLYAEL-GKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKL 297
L L + +A +V R L P L + + GK ++ + K M K
Sbjct: 197 LLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKP 256
Query: 298 STKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSIL 357
+ +T ++V +++ +++K+M + GC + + L+ +++ A +
Sbjct: 257 NVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVF 316
Query: 358 LKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYIN 417
K + + KP +Y+ ++D+++ D+ S ++ + M + G+V F LV A
Sbjct: 317 EK-MKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCK 375
Query: 418 AKT--PAYGIRDRMRADNVFPN 437
A A+ D MR + PN
Sbjct: 376 AGNFGEAFDTLDVMRDQGILPN 397
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 82/394 (20%), Positives = 159/394 (40%), Gaps = 17/394 (4%)
Query: 34 LRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLR---GLQKAESYIQKIPESF 90
L R+ GK +++ + +K I+RD + L + L GL++A ++K+ E
Sbjct: 125 LEALRVDGKLEEMAYVFDLMQK-RIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREF- 182
Query: 91 RGEVV----YRTLLANCVAGNNVKKAEEVFNRMKDKGF-PVTSFACNQLLILYKRLDKKK 145
G V+ Y L+ + +A EV+ RM +GF P + ++ L KR D
Sbjct: 183 -GFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDS 241
Query: 146 VADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAK 205
V +L ME +K +++ I I + G++ + ++++ M EG PD T +L
Sbjct: 242 VMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLID 301
Query: 206 HYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESN---P 262
+ + + A+ + ++M+ K R T LL +++ D V + W E + P
Sbjct: 302 ALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVP 361
Query: 263 WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLV 322
+ ++A K EA M + Y L+ L +L
Sbjct: 362 DVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELF 421
Query: 323 KQMAESGCHIGPLAWDALVKLHVEGGEVEKADSI-LLKAQQQNKFKPMFSSYMLIMDQYA 381
M G + P A+ +V + G + ++ + + P + + A
Sbjct: 422 GNMESLG--VKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLA 479
Query: 382 KRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAY 415
K G ++IF+ ++ +G V + +++ Y
Sbjct: 480 KAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCY 513
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 84/406 (20%), Positives = 139/406 (34%), Gaps = 81/406 (19%)
Query: 94 VVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLL--------------ILYK 139
V Y TLLA +++A E+F M KG P + N L +L+K
Sbjct: 574 VTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFK 633
Query: 140 RLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAM-----KSEGIE 194
+D V DV F+Y +I L QV EAM + +
Sbjct: 634 MMDMGCVPDV-------------FTYNTII------FGLVKNGQVKEAMCFFHQMKKLVY 674
Query: 195 PDSSTQAILAKHYVSGGRKEKAEAML----------------KEMEGDNLKE-------- 230
PD T L V E A ++ +++ G L E
Sbjct: 675 PDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGIDNAVS 734
Query: 231 ------HRWTCR----LLLPLYAELGKADQVARIWKLCES-------NPWLDVCMAAIEA 273
CR +L+P+ K + V+ L E P L I
Sbjct: 735 FSERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGG 794
Query: 274 WGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIG 333
+ + +E A+ VF ++ T Y LL Y + + +L K+M+ C
Sbjct: 795 LLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEAN 854
Query: 334 PLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIF 393
+ + ++ V+ G V+ A + F P +Y ++D +K G ++ +++F
Sbjct: 855 TITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLF 914
Query: 394 HRMRQVGYVARFKQFQTLVQAYINA--KTPAYGIRDRMRADNVFPN 437
M G + L+ + A A + RM + V P+
Sbjct: 915 EGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPD 960
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 69/175 (39%), Gaps = 3/175 (1%)
Query: 265 DVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQ 324
+ C +EA K+EE VF M K K T Y + K + L + +++
Sbjct: 119 ETCNYMLEALRVDGKLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRK 178
Query: 325 MAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRG 384
M E G + +++ L+ L ++ +A + + + F+P +Y +M KR
Sbjct: 179 MREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEG-FRPSLQTYSSLMVGLGKRR 237
Query: 385 DIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAK--TPAYGIRDRMRADNVFPN 437
DI S + M +G F ++ A AY I RM + P+
Sbjct: 238 DIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPD 292
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 85.9 bits (211), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 79/386 (20%), Positives = 167/386 (43%), Gaps = 22/386 (5%)
Query: 46 LSEWLETNKKLDFIERDYASCLDLIAKLRGL--QKAESYIQKIPESFRGEVVYRTLLANC 103
LSE E F ++ ++ +L+A L+GL K + + F + Y+++L N
Sbjct: 120 LSELFEP-----FKDKPESTSSELLAFLKGLGFHKKFDLALRAFDWFMKQKDYQSMLDNS 174
Query: 104 VAG---------NNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLM 153
V V A +FN +++ GF + ++ L+ + + ++ +V M
Sbjct: 175 VVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKM 234
Query: 154 EKENVKLTQFSYKILIDIKGQ-SNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGR 212
E++ K T +Y +++++ G+ + +VE MKS+GI PD+ T L G
Sbjct: 235 EEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSL 294
Query: 213 KEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWK---LCESNPWLDVCMA 269
++A + +EM+ + T LL +Y + + + ++ L +P + +
Sbjct: 295 HQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNS 354
Query: 270 AIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESG 329
I A+ + ++EA + +M++ K YT LL + + + ++M +G
Sbjct: 355 LISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAG 414
Query: 330 CHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHST 389
C ++A +K++ G+ + I + P ++ ++ + + G
Sbjct: 415 CKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCG-LSPDIVTWNTLLAVFGQNGMDSEV 473
Query: 390 EKIFHRMRQVGYVARFKQFQTLVQAY 415
+F M++ G+V + F TL+ AY
Sbjct: 474 SGVFKEMKRAGFVPERETFNTLISAY 499
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/317 (21%), Positives = 126/317 (39%), Gaps = 9/317 (2%)
Query: 106 GNNVKKAE--EVFNRMKDKGFPVTSFACNQLLILYKR--LDKKKVADVLLLMEKENVKLT 161
GN K E ++F+ + G N LL ++ + +D + V+ V M++
Sbjct: 430 GNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSE-VSGVFKEMKRAGFVPE 488
Query: 162 QFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLK 221
+ ++ LI + V M G+ PD ST + GG E++E +L
Sbjct: 489 RETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLA 548
Query: 222 EMEGDNLKEHRWTCRLLLPLYA---ELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLN 278
EME K + T LL YA E+G +A P + + K +
Sbjct: 549 EMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCD 608
Query: 279 KVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWD 338
+ EAE F + + +++ +Y +M++K ++ M E G ++
Sbjct: 609 LLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYN 668
Query: 339 ALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQ 398
+L+ +H + K++ IL + + KP SY ++ Y + + +IF MR
Sbjct: 669 SLMYMHSRSADFGKSEEILREILAKG-IKPDIISYNTVIYAYCRNTRMRDASRIFSEMRN 727
Query: 399 VGYVARFKQFQTLVQAY 415
G V + T + +Y
Sbjct: 728 SGIVPDVITYNTFIGSY 744
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 75/342 (21%), Positives = 144/342 (42%), Gaps = 19/342 (5%)
Query: 89 SFRGEVVYRTLL-ANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVA 147
S +G+ V R+L+ N +G E+F KDK +S +LL K L K
Sbjct: 96 SPQGQQVLRSLIEPNFDSGQLDSVLSELFEPFKDKPESTSS----ELLAFLKGLGFHKKF 151
Query: 148 DVLL-----LMEKENVK--LTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQ 200
D+ L M++++ + L I+I + G+ ++ + ++ +G D +
Sbjct: 152 DLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSY 211
Query: 201 AILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKA-DQVARIWKLCE 259
L + + GR +A + K+ME D K T ++L ++ ++G +++ + + +
Sbjct: 212 TSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMK 271
Query: 260 SN---PWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLS 316
S+ P I + + +EA VF+ M Y ALL VY
Sbjct: 272 SDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPK 331
Query: 317 KGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNK-FKPMFSSYML 375
+ ++ +M +G + +++L+ + G +++A + LK Q K KP +Y
Sbjct: 332 EAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEA--MELKNQMAEKGTKPDVFTYTT 389
Query: 376 IMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYIN 417
++ + + G + S IF MR G F ++ Y N
Sbjct: 390 LLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGN 431
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 79/389 (20%), Positives = 147/389 (37%), Gaps = 48/389 (12%)
Query: 95 VYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVA-DVLLLM 153
Y TL+ C G+ ++A +VF MK GF N LL +Y + + K A VL M
Sbjct: 281 TYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEM 340
Query: 154 EKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRK 213
+ +Y LI + L ++ M +G +PD T L + G+
Sbjct: 341 VLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKV 400
Query: 214 EKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIW---KLCESNP----W--- 263
E A ++ +EM K + T + +Y GK ++ +I+ +C +P W
Sbjct: 401 ESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTL 460
Query: 264 --------LDVCMAA--------------------IEAWGKLNKVEEAEAVFKRMSKTWK 295
+D ++ I A+ + E+A V++RM
Sbjct: 461 LAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGV 520
Query: 296 KLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADS 355
Y +L A M + + ++ +M + C L + +L+ + G E+ S
Sbjct: 521 TPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHS 580
Query: 356 ILLKAQQQNKFKP---MFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLV 412
L + +P + + +L+ +K + E+ F +++ G+ ++V
Sbjct: 581 -LAEEVYSGVIEPRAVLLKTLVLVC---SKCDLLPEAERAFSELKERGFSPDITTLNSMV 636
Query: 413 QAYINAK--TPAYGIRDRMRADNVFPNKA 439
Y + A G+ D M+ P+ A
Sbjct: 637 SIYGRRQMVAKANGVLDYMKERGFTPSMA 665
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/322 (21%), Positives = 124/322 (38%), Gaps = 13/322 (4%)
Query: 106 GNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLD-KKKVADVLLLMEKENVKLTQFS 164
G K + +MK G ++ N L+ KR ++ A V M+ + +
Sbjct: 257 GTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVT 316
Query: 165 YKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEME 224
Y L+D+ G+S+ +V+ M G P T L Y G ++A + +M
Sbjct: 317 YNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMA 376
Query: 225 GDNLKEHRWTCRLLLPLYAELGKADQVARIWK-----LCESNPWLDVCM--AAIEAWGKL 277
K +T LL + GK + I++ C+ N +C A I+ +G
Sbjct: 377 EKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPN----ICTFNAFIKMYGNR 432
Query: 278 NKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAW 337
K E +F ++ + LL V+ + M S+ + K+M +G +
Sbjct: 433 GKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETF 492
Query: 338 DALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMR 397
+ L+ + G E+A ++ + P S+Y ++ A+ G +EK+ M
Sbjct: 493 NTLISAYSRCGSFEQAMTVYRRMLDAG-VTPDLSTYNTVLAALARGGMWEQSEKVLAEME 551
Query: 398 QVGYVARFKQFQTLVQAYINAK 419
+ +L+ AY N K
Sbjct: 552 DGRCKPNELTYCSLLHAYANGK 573
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/152 (19%), Positives = 65/152 (42%), Gaps = 2/152 (1%)
Query: 271 IEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGC 330
I GK +V A +F + + L YT+L+ +A+ + ++ K+M E GC
Sbjct: 180 ISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGC 239
Query: 331 HIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHS-T 389
+ ++ ++ + + G + L++ + + P +Y ++ KRG +H
Sbjct: 240 KPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLI-TCCKRGSLHQEA 298
Query: 390 EKIFHRMRQVGYVARFKQFQTLVQAYINAKTP 421
++F M+ G+ + L+ Y + P
Sbjct: 299 AQVFEEMKAAGFSYDKVTYNALLDVYGKSHRP 330
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 65/143 (45%), Gaps = 1/143 (0%)
Query: 109 VKKAEEVFNRMKDKGFPVTSFACNQLLILYKR-LDKKKVADVLLLMEKENVKLTQFSYKI 167
V KA V + MK++GF + N L+ ++ R D K ++L + + +K SY
Sbjct: 645 VAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNT 704
Query: 168 LIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDN 227
+I ++ + ++ M++ GI PD T Y + E+A +++ M
Sbjct: 705 VIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHG 764
Query: 228 LKEHRWTCRLLLPLYAELGKADQ 250
+ ++ T ++ Y +L + D+
Sbjct: 765 CRPNQNTYNSIVDGYCKLNRKDE 787
>sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810,
chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1
Length = 952
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 97/446 (21%), Positives = 192/446 (43%), Gaps = 30/446 (6%)
Query: 10 STLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLD-------FIERD 62
S + K EEG ++S ++ + G A W + K++ + +
Sbjct: 365 SCVRKMKEEGIEMSLVTYSVIVGGFSKA---GHAEAADYWFDEAKRIHKTLNASIYGKII 421
Query: 63 YASCLDLIAKLRGLQKAESYIQKIPESFRGE--VVYRTLLANCVAGNNVKKAEEVFNRMK 120
YA C + +++AE+ ++++ E +Y T++ + KK VF R+K
Sbjct: 422 YAHC-----QTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLK 476
Query: 121 DKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLT 179
+ GF T L+ LY ++ K K +V +M++E VK +Y ++I+ + D
Sbjct: 477 ECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWA 536
Query: 180 GMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLL 239
V E M EG++PD + + G ++A +KEM+ L+ HR T R +
Sbjct: 537 NAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQ--KLR-HRPTTRTFM 593
Query: 240 PL---YAELG---KADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKT 293
P+ YA+ G ++ +V + + C P + I + ++E+A + M+
Sbjct: 594 PIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLA 653
Query: 294 WKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKA 353
+ YT +++ YA K + ++ G + ++AL+K + G ++ A
Sbjct: 654 GVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSA 713
Query: 354 DSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQ 413
++ + +N + F Y +++D +A+RGD+ + +M++ G + + +
Sbjct: 714 LAVTKEMSARNIPRNSF-VYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFIS 772
Query: 414 AYINAK--TPAYGIRDRMRADNVFPN 437
A A A + M A V PN
Sbjct: 773 ACSKAGDMNRATQTIEEMEALGVKPN 798
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/346 (19%), Positives = 146/346 (42%), Gaps = 7/346 (2%)
Query: 107 NNVKKAEEVFNRMKDKGFPVTSFACNQLLILYK-RLDKKKVADVLLLMEKENVKLTQFSY 165
++ +A E F RM+ +G TS L+ Y D + + M++E ++++ +Y
Sbjct: 323 GDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTY 382
Query: 166 KILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEG 225
+++ ++ D + K ++S + + E+AEA+++EME
Sbjct: 383 SVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEE 442
Query: 226 DNLKEHRWTCRLLLPLY---AELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEE 282
+ + ++ Y A+ K V + K C P + I + K+ K+ +
Sbjct: 443 EGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISK 502
Query: 283 AEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVK 342
A V + M + K + K Y+ ++ + K + + + M + G + ++ ++
Sbjct: 503 ALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIIS 562
Query: 343 LHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYV 402
G +++A + K Q+ + +P ++M I+ YAK GD+ + ++F MR+ G V
Sbjct: 563 AFCGMGNMDRAIQTV-KEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCV 621
Query: 403 ARFKQFQTLVQAYINAKT--PAYGIRDRMRADNVFPNKALAAQVAQ 446
F L+ + + A I D M V N+ ++ Q
Sbjct: 622 PTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQ 667
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 94/228 (41%), Gaps = 22/228 (9%)
Query: 95 VYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILY-KRLDKKKVADVLLLM 153
Y LL C ++ A V M + P SF N L+ + +R D + AD++ M
Sbjct: 696 TYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQM 755
Query: 154 EKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRK 213
+KE VK +Y I ++ D+ Q +E M++ G++P+ T L K +
Sbjct: 756 KKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLP 815
Query: 214 EKAEAMLKEMEGDNLKEHRWTCRLLLPLY---AELGKADQVARIWKLC----ESNPWLDV 266
EKA + +EM+ +K + LL A + +A + + +C E+ +D+
Sbjct: 816 EKALSCYEEMKAMGIKPDKAVYHCLLTSLLSRASIAEAYIYSGVMTICKEMVEAGLIVDM 875
Query: 267 --------CMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALL 306
C+ IEA G E E + K W S H+ L
Sbjct: 876 GTAVHWSKCLCKIEASGG----ELTETLQKTFPPDWS--SHHHHHGFL 917
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 57/271 (21%), Positives = 109/271 (40%), Gaps = 9/271 (3%)
Query: 68 DLIAKLRGLQKAESYIQKIPE--SFRGEVVYRTLLA---NCVAGNNVKKAEEVFNRMKDK 122
++I+ G+ + IQ + E R RT + +++++ EVF+ M+
Sbjct: 559 NIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRC 618
Query: 123 GFPVTSFACNQLLI-LYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGM 181
G T N L+ L ++ +K ++L M V + +Y ++ D
Sbjct: 619 GCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKA 678
Query: 182 DQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPL 241
+ +++EG++ D T L K GR + A A+ KEM N+ + + +L+
Sbjct: 679 FEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDG 738
Query: 242 YAELGKADQVARIWKLCESN---PWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLS 298
+A G + A + + + P + + I A K + A + M K +
Sbjct: 739 WARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPN 798
Query: 299 TKHYTALLKVYADHKMLSKGKDLVKQMAESG 329
K YT L+K +A + K ++M G
Sbjct: 799 IKTYTTLIKGWARASLPEKALSCYEEMKAMG 829
Score = 40.8 bits (94), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/145 (20%), Positives = 65/145 (44%), Gaps = 1/145 (0%)
Query: 271 IEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGC 330
++ +G+ + A F+RM +++ YT+L+ YA + + + V++M E G
Sbjct: 316 VKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEALSCVRKMKEEGI 375
Query: 331 HIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTE 390
+ + + +V + G E AD +A++ +K S Y I+ + + ++ E
Sbjct: 376 EMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNA-SIYGKIIYAHCQTCNMERAE 434
Query: 391 KIFHRMRQVGYVARFKQFQTLVQAY 415
+ M + G A + T++ Y
Sbjct: 435 ALVREMEEEGIDAPIAIYHTMMDGY 459
Score = 39.7 bits (91), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 367 KPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAY 415
KP + + L++ Y +RGD+H + F RMR G + + +L+ AY
Sbjct: 306 KPSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAY 354
>sp|Q9LS88|PP250_ARATH Pentatricopeptide repeat-containing protein At3g23020
OS=Arabidopsis thaliana GN=At3g23020 PE=2 SV=1
Length = 842
Score = 82.0 bits (201), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 80/364 (21%), Positives = 151/364 (41%), Gaps = 22/364 (6%)
Query: 67 LDLIAKLRGLQKAESYIQKIP--------ESFRGEVVYRTLLANCVAGNNVKKAEEVFNR 118
L + K R QKAE + +K Y T++ +K+A E F R
Sbjct: 264 LQMYKKAREFQKAEEFFKKWSCDENKADSHVCLSSYTYNTMIDTYGKSGQIKEASETFKR 323
Query: 119 MKDKGFPVTSFACNQLLILYKRLDKKKVADVLLLME--KENVKLTQFSYKILIDIKGQSN 176
M ++G T+ N ++ +Y + ++ +V LM+ K + +Y ILI + ++N
Sbjct: 324 MLEEGIVPTTVTFNTMIHIYG--NNGQLGEVTSLMKTMKLHCAPDTRTYNILISLHTKNN 381
Query: 177 DLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCR 236
D+ + MK +G++PD + L + E+AE ++ EM+ DN++ +T
Sbjct: 382 DIERAGAYFKEMKDDGLKPDPVSYRTLLYAFSIRHMVEEAEGLIAEMDDDNVEIDEYTQS 441
Query: 237 LLLPLYAELGKADQVARIWKL-----CESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMS 291
L +Y E A+ + + W N + A I+A+G+ + EAE VF
Sbjct: 442 ALTRMYVE---AEMLEKSWSWFKRFHVAGNMSSEGYSANIDAYGERGYLSEAERVFICCQ 498
Query: 292 KTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVE 351
+ K+ + Y ++K Y K K +L + M G ++ LV++
Sbjct: 499 EVNKR-TVIEYNVMIKAYGISKSCEKACELFESMMSYGVTPDKCTYNTLVQILASADMPH 557
Query: 352 KADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTL 411
K L K ++ Y ++ + K G ++ E+++ M + + L
Sbjct: 558 KGRCYLEKMRETGYVSDCI-PYCAVISSFVKLGQLNMAEEVYKEMVEYNIEPDVVVYGVL 616
Query: 412 VQAY 415
+ A+
Sbjct: 617 INAF 620
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 114/249 (45%), Gaps = 15/249 (6%)
Query: 159 KLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEA 218
+L Y I++ I G++ + + + M +GI+P +ST L Y GG K A
Sbjct: 184 ELNVIHYNIMLRILGKACKWRYVQSLWDEMIRKGIKPINSTYGTLIDVYSKGGLKVHALC 243
Query: 219 MLKEMEGDNLKEHRWTCRLLLPLYA---ELGKADQVARIWKLCESNPWLDVCMAA----- 270
L +M ++ T ++L +Y E KA++ + W E+ VC+++
Sbjct: 244 WLGKMSKIGMQPDEVTTGIVLQMYKKAREFQKAEEFFKKWSCDENKADSHVCLSSYTYNT 303
Query: 271 -IEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESG 329
I+ +GK +++EA FKRM + +T + ++ +Y ++ L + L+K M
Sbjct: 304 MIDTYGKSGQIKEASETFKRMLEEGIVPTTVTFNTMIHIYGNNGQLGEVTSLMKTMK--- 360
Query: 330 CHIGP--LAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIH 387
H P ++ L+ LH + ++E+A + K + + KP SY ++ ++ R +
Sbjct: 361 LHCAPDTRTYNILISLHTKNNDIERAGA-YFKEMKDDGLKPDPVSYRTLLYAFSIRHMVE 419
Query: 388 STEKIFHRM 396
E + M
Sbjct: 420 EAEGLIAEM 428
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 112/262 (42%), Gaps = 36/262 (13%)
Query: 147 ADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKH 206
A+ + + +E K T Y ++I G S ++ E+M S G+ PD T L +
Sbjct: 490 AERVFICCQEVNKRTVIEYNVMIKAYGISKSCEKACELFESMMSYGVTPDKCTYNTLVQI 549
Query: 207 YVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLDV 266
S K L++M + V+ C
Sbjct: 550 LASADMPHKGRCYLEKMR----------------------ETGYVSDCIPYC-------- 579
Query: 267 CMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMA 326
A I ++ KL ++ AE V+K M + + Y L+ +AD + + V+ M
Sbjct: 580 --AVISSFVKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFADTGNVQQAMSYVEAMK 637
Query: 327 ESGCHIGPLAWDALVKLHVEGGEVEKADSI---LLKAQQQNKFKPMFSSYMLIMDQYAKR 383
E+G + +++L+KL+ + G +++A++I LL++ + ++ +++S +I + Y++R
Sbjct: 638 EAGIPGNSVIYNSLIKLYTKVGYLDEAEAIYRKLLQSCNKTQYPDVYTSNCMI-NLYSER 696
Query: 384 GDIHSTEKIFHRMRQVGYVARF 405
+ E IF M+Q G F
Sbjct: 697 SMVRKAEAIFDSMKQRGEANEF 718
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/301 (20%), Positives = 122/301 (40%), Gaps = 13/301 (4%)
Query: 63 YASCLDLIAKLRGLQKAESYIQKIPESFRGEVV-YRTLLANCVAGNNVKKAEEVFNRMKD 121
Y++ +D + L +AE E + V+ Y ++ + +KA E+F M
Sbjct: 474 YSANIDAYGERGYLSEAERVFICCQEVNKRTVIEYNVMIKAYGISKSCEKACELFESMMS 533
Query: 122 KGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQ-FSYKILIDIKGQSNDLTG 180
G N L+ + D L +E ++ Y +I + L
Sbjct: 534 YGVTPDKCTYNTLVQILASADMPHKGRCYLEKMRETGYVSDCIPYCAVISSFVKLGQLNM 593
Query: 181 MDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLP 240
++V + M IEPD +L + G ++A + ++ M+ + + L+
Sbjct: 594 AEEVYKEMVEYNIEPDVVVYGVLINAFADTGNVQQAMSYVEAMKEAGIPGNSVIYNSLIK 653
Query: 241 LYAELGKADQVARIWK----LCESNPWLDV----CMAAIEAWGKLNKVEEAEAVFKRMSK 292
LY ++G D+ I++ C + DV CM I + + + V +AEA+F M K
Sbjct: 654 LYTKVGYLDEAEAIYRKLLQSCNKTQYPDVYTSNCM--INLYSERSMVRKAEAIFDSM-K 710
Query: 293 TWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEK 352
+ + + +L +Y + + + KQM E PL++++++ L G ++
Sbjct: 711 QRGEANEFTFAMMLCMYKKNGRFEEATQIAKQMREMKILTDPLSYNSVLGLFALDGRFKE 770
Query: 353 A 353
A
Sbjct: 771 A 771
Score = 40.8 bits (94), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 76/173 (43%), Gaps = 7/173 (4%)
Query: 63 YASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAG-----NNVKKAEEVFN 117
Y S + L K+ L +AE+ +K+ +S +NC+ + V+KAE +F+
Sbjct: 648 YNSLIKLYTKVGYLDEAEAIYRKLLQSCNKTQYPDVYTSNCMINLYSERSMVRKAEAIFD 707
Query: 118 RMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQ-FSYKILIDIKGQSN 176
MK +G F +L +YK+ + + A + +E LT SY ++ +
Sbjct: 708 SMKQRG-EANEFTFAMMLCMYKKNGRFEEATQIAKQMREMKILTDPLSYNSVLGLFALDG 766
Query: 177 DLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLK 229
+ + M S GI+PD ST L + G +KA ++E+ +K
Sbjct: 767 RFKEAVETFKEMVSSGIQPDDSTFKSLGTILMKLGMSKKAVRKIEEIRKKEIK 819
Score = 37.4 bits (85), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 62/148 (41%), Gaps = 5/148 (3%)
Query: 275 GKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGP 334
GK K ++++ M + K Y L+ VY+ + + +M++ G
Sbjct: 198 GKACKWRYVQSLWDEMIRKGIKPINSTYGTLIDVYSKGGLKVHALCWLGKMSKIGMQPDE 257
Query: 335 LAWDALVKLHVEGGEVEKADSILLK-AQQQNKFKPMFS----SYMLIMDQYAKRGDIHST 389
+ +++++ + E +KA+ K + +NK +Y ++D Y K G I
Sbjct: 258 VTTGIVLQMYKKAREFQKAEEFFKKWSCDENKADSHVCLSSYTYNTMIDTYGKSGQIKEA 317
Query: 390 EKIFHRMRQVGYVARFKQFQTLVQAYIN 417
+ F RM + G V F T++ Y N
Sbjct: 318 SETFKRMLEEGIVPTTVTFNTMIHIYGN 345
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 85/406 (20%), Positives = 174/406 (42%), Gaps = 13/406 (3%)
Query: 20 NDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQK- 78
++L R ++ + L + +A+ L EWL + ++ D+ +++ ++ G +
Sbjct: 132 SELLRTDLVSLVKGLDDSGHWERAVFLFEWLVLSSNSGALKLDH-QVIEIFVRILGRESQ 190
Query: 79 ---AESYIQKIP--ESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQ 133
A + KIP E Y T+L +KA ++F RMK+ G T N
Sbjct: 191 YSVAAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNV 250
Query: 134 LLILYKRLDK--KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSE 191
+L ++ ++ + +K+ VL M + +K +F+ ++ + L + +KS
Sbjct: 251 ILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSC 310
Query: 192 GIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQV 251
G EP + T L + + G +A ++LKEME ++ T L+ Y G + +
Sbjct: 311 GYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEA 370
Query: 252 ARIWKLCESN---PWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKV 308
A + ++ P I+A+GK K +EA +F M + +T Y A+L +
Sbjct: 371 AGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSL 430
Query: 309 YADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKP 368
++ ++ M +GC W+ ++ L G ++K + + + + F+P
Sbjct: 431 LGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKG-MDKFVNRVFREMKSCGFEP 489
Query: 369 MFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQA 414
++ ++ Y + G K++ M + G+ A + L+ A
Sbjct: 490 DRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNA 535
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 89/404 (22%), Positives = 172/404 (42%), Gaps = 31/404 (7%)
Query: 53 NKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESF--RGEVVYRTLLANCVAGNNVK 110
+K L F E ++ L A+ L++A+ + ++ G V Y LL
Sbjct: 274 SKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYT 333
Query: 111 KAEEVFNRMKDKGFPVTSFACNQLLILYKRLD-KKKVADVLLLMEKENVKLTQFSYKILI 169
+A V M++ P S N+L+ Y R K+ A V+ +M K+ V +Y +I
Sbjct: 334 EALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVI 393
Query: 170 DIKGQSNDLTGMDQVVEAMKSEGIEPDSST-QAILAKHYVSGGRKEKAEAMLK---EMEG 225
D G++ ++ +MK G P++ T A+L+ G+K ++ M+K +M+
Sbjct: 394 DAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLL----GKKSRSNEMIKMLCDMKS 449
Query: 226 DNLKEHRWTCRLLLPLYAELGKADQVARIW---KLCESNPWLDVCMAAIEAWGKLNKVEE 282
+ +R T +L L G V R++ K C P D I A+G+ +
Sbjct: 450 NGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVD 509
Query: 283 AEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVK 342
A ++ M++ Y ALL A G++++ M G ++ +++
Sbjct: 510 ASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQ 569
Query: 343 LHVEGGE---VEKADSILLKAQQQNKFKPMFSSYM----LIMDQYAKRGDIHSTEKIFHR 395
+ +GG +E+ ++ + + Q +F S+M L++ + R + +E+ F
Sbjct: 570 CYAKGGNYLGIERIENRIKEGQ-------IFPSWMLLRTLLLANFKCRA-LAGSERAFTL 621
Query: 396 MRQVGYVARFKQFQTLVQAYI--NAKTPAYGIRDRMRADNVFPN 437
++ GY F +++ + N A GI + +R D + P+
Sbjct: 622 FKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPD 665
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/325 (20%), Positives = 126/325 (38%), Gaps = 40/325 (12%)
Query: 95 VYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLL-M 153
+ T+LA C K VF MK GF N L+ Y R + A + M
Sbjct: 458 TWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEM 517
Query: 154 EKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRK 213
+ +Y L++ + D + V+ MKS+G +P ++ +++ + Y GG
Sbjct: 518 TRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNY 577
Query: 214 ---EKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAA 270
E+ E +KE Q+ W L +
Sbjct: 578 LGIERIENRIKE--------------------------GQIFPSWMLLRT---------L 602
Query: 271 IEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGC 330
+ A K + +E F K K + ++L ++ + M + + +++ + E G
Sbjct: 603 LLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGL 662
Query: 331 HIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTE 390
+ +++L+ ++V GE KA+ I LK ++++ KP SY ++ + +RG +
Sbjct: 663 SPDLVTYNSLMDMYVRRGECWKAEEI-LKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAV 721
Query: 391 KIFHRMRQVGYVARFKQFQTLVQAY 415
++ M + G + T V Y
Sbjct: 722 RMLSEMTERGIRPCIFTYNTFVSGY 746
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/311 (20%), Positives = 120/311 (38%), Gaps = 38/311 (12%)
Query: 63 YASCLDLIAKLRGLQKAESYIQKI-PESFRGEVVYRTLLANCVA-GNNVKKAEEVFNRMK 120
Y + L+ +A+ + E+ I + + F+ +L+ C A G N E + NR+K
Sbjct: 529 YNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIK 588
Query: 121 D-KGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLT 179
+ + FP LL +K L +K K + ++ I ++N
Sbjct: 589 EGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYD 648
Query: 180 GMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLL 239
+ ++E+++ +G+ PD T L YV G KAE +LK +E LK
Sbjct: 649 QAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLK---------- 698
Query: 240 PLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLST 299
P L I+ + + ++EA + M++ +
Sbjct: 699 ----------------------PDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCI 736
Query: 300 KHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLK 359
Y + Y M ++ +D+++ MA++ C L + +V + G+ +A + K
Sbjct: 737 FTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRPNELTFKMVVDGYCRAGKYSEAMDFVSK 796
Query: 360 AQQQNKFKPMF 370
+ F P F
Sbjct: 797 IKT---FDPCF 804
>sp|Q9SAD9|PPR40_ARATH Pentatricopeptide repeat-containing protein At1g13040,
mitochondrial OS=Arabidopsis thaliana GN=At1g13040 PE=2
SV=1
Length = 517
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/326 (22%), Positives = 134/326 (41%), Gaps = 6/326 (1%)
Query: 96 YRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLL-ME 154
Y + V + + AE ++ MK GF + F ++ + ++ K + D LL ME
Sbjct: 47 YNRFIGVLVRESRFELAEAIYWDMKPMGFSLIPFTYSRFISGLCKVKKFDLIDALLSDME 106
Query: 155 KENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKE 214
+++ + +D+ + N + Q M G EPD + IL G+
Sbjct: 107 TLGFIPDIWAFNVYLDLLCRENKVGFAVQTFFCMVQRGREPDVVSYTILINGLFRAGKVT 166
Query: 215 KAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKAD----QVARIWKLCESNPWLDVCMAA 270
A + M + C L+ K D VA K V A
Sbjct: 167 DAVEIWNAMIRSGVSPDNKACAALVVGLCHARKVDLAYEMVAEEIKSARVKLSTVVYNAL 226
Query: 271 IEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGC 330
I + K ++E+AEA+ MSK + Y LL Y D+ ML + + ++ +M SG
Sbjct: 227 ISGFCKAGRIEKAEALKSYMSKIGCEPDLVTYNVLLNYYYDNNMLKRAEGVMAEMVRSGI 286
Query: 331 HIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTE 390
+ +++ L+K H +K + ++K + F + SY +++ + + +
Sbjct: 287 QLDAYSYNQLLKRHCRVSHPDKCYNFMVKEMEPRGFCDVV-SYSTLIETFCRASNTRKAY 345
Query: 391 KIFHRMRQVGYVARFKQFQTLVQAYI 416
++F MRQ G V + +L++A++
Sbjct: 346 RLFEEMRQKGMVMNVVTYTSLIKAFL 371
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 74/343 (21%), Positives = 141/343 (41%), Gaps = 8/343 (2%)
Query: 94 VVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLLM 153
V Y L+ V A E++N M G + AC L++ K +A ++
Sbjct: 150 VSYTILINGLFRAGKVTDAVEIWNAMIRSGVSPDNKACAALVVGLCHARKVDLAYEMVAE 209
Query: 154 EKEN--VKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGG 211
E ++ VKL+ Y LI ++ + + + M G EPD T +L +Y
Sbjct: 210 EIKSARVKLSTVVYNALISGFCKAGRIEKAEALKSYMSKIGCEPDLVTYNVLLNYYYDNN 269
Query: 212 RKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIW-KLCESNPWLDVCMAA 270
++AE ++ EM ++ ++ LL + + D+ K E + DV +
Sbjct: 270 MLKRAEGVMAEMVRSGIQLDAYSYNQLLKRHCRVSHPDKCYNFMVKEMEPRGFCDVVSYS 329
Query: 271 --IEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAES 328
IE + + + +A +F+ M + ++ YT+L+K + S K L+ QM E
Sbjct: 330 TLIETFCRASNTRKAYRLFEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTEL 389
Query: 329 GCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHS 388
G + + ++ + G V+KA + +++ P SY ++ + G +
Sbjct: 390 GLSPDRIFYTTILDHLCKSGNVDKAYGV-FNDMIEHEITPDAISYNSLISGLCRSGRVTE 448
Query: 389 TEKIFHRMRQVGYVARFKQFQTLVQAYINAK--TPAYGIRDRM 429
K+F M+ F+ ++ I K + AY + D+M
Sbjct: 449 AIKLFEDMKGKECCPDELTFKFIIGGLIRGKKLSAAYKVWDQM 491
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/255 (21%), Positives = 94/255 (36%), Gaps = 22/255 (8%)
Query: 4 PDISIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDY 63
PD+ ++ L Y + N L RAE +A M +QL + Y
Sbjct: 253 PDLVTYNVLLNYYYDNNMLKRAEGVMA-------EMVRSGIQLDAY------------SY 293
Query: 64 ASCLDLIAKLRGLQKAESYIQKI--PESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKD 121
L ++ K +++ K P F V Y TL+ +N +KA +F M+
Sbjct: 294 NQLLKRHCRVSHPDKCYNFMVKEMEPRGFCDVVSYSTLIETFCRASNTRKAYRLFEEMRQ 353
Query: 122 KGFPVTSFACNQLLILYKRLDKKKVADVLL-LMEKENVKLTQFSYKILIDIKGQSNDLTG 180
KG + L+ + R VA LL M + + + Y ++D +S ++
Sbjct: 354 KGMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTILDHLCKSGNVDK 413
Query: 181 MDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLP 240
V M I PD+ + L GR +A + ++M+G T + ++
Sbjct: 414 AYGVFNDMIEHEITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKFIIG 473
Query: 241 LYAELGKADQVARIW 255
K ++W
Sbjct: 474 GLIRGKKLSAAYKVW 488
>sp|Q940Z1|PPR51_ARATH Pentatricopeptide repeat-containing protein At1g19525
OS=Arabidopsis thaliana GN=At1g19525 PE=2 SV=2
Length = 316
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 94/206 (45%), Gaps = 4/206 (1%)
Query: 168 LIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDN 227
L+ + +S + + E +KS G+ PD + YV+ G+ + E ++KEM+
Sbjct: 16 LVHMYSKSGNFERATEAFENLKSYGLRPDEKIYEAMILGYVNAGKPKLGERLMKEMQAKE 75
Query: 228 LKEHRWTCRLLLPLYAELGKADQVARI---WKLCESNPW-LDVCMAAIEAWGKLNKVEEA 283
LK LL YA++G A+ A I + P + +EA+GK +V++A
Sbjct: 76 LKASEEVYMALLRAYAQMGDANGAAGISSSMQYASDGPLSFEAYSLFVEAYGKAGQVDKA 135
Query: 284 EAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKL 343
++ F M K K K L++ Y L K L+ Q+ + G IG + + LV
Sbjct: 136 KSNFDEMRKLGHKPDDKCIANLVRAYKGENSLDKALRLLLQLEKDGIEIGVITYTVLVDW 195
Query: 344 HVEGGEVEKADSILLKAQQQNKFKPM 369
G +E+A+ +L+K Q + P
Sbjct: 196 MANLGLIEEAEQLLVKISQLGEAPPF 221
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 63/154 (40%)
Query: 262 PWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDL 321
P + A + + K E A F+ + + K Y A++ Y + G+ L
Sbjct: 8 PDILTATALVHMYSKSGNFERATEAFENLKSYGLRPDEKIYEAMILGYVNAGKPKLGERL 67
Query: 322 VKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYA 381
+K+M + AL++ + + G+ A I Q + F +Y L ++ Y
Sbjct: 68 MKEMQAKELKASEEVYMALLRAYAQMGDANGAAGISSSMQYASDGPLSFEAYSLFVEAYG 127
Query: 382 KRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAY 415
K G + + F MR++G+ K LV+AY
Sbjct: 128 KAGQVDKAKSNFDEMRKLGHKPDDKCIANLVRAY 161
Score = 33.1 bits (74), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 76/177 (42%), Gaps = 6/177 (3%)
Query: 93 EVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRL-DKKKVADVLL 151
E +Y ++ V K E + M+ K + LL Y ++ D A +
Sbjct: 45 EKIYEAMILGYVNAGKPKLGERLMKEMQAKELKASEEVYMALLRAYAQMGDANGAAGISS 104
Query: 152 LMEKENVKLTQF-SYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSG 210
M+ + F +Y + ++ G++ + + M+ G +PD A L + Y
Sbjct: 105 SMQYASDGPLSFEAYSLFVEAYGKAGQVDKAKSNFDEMRKLGHKPDDKCIANLVRAYKGE 164
Query: 211 GRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELG---KADQ-VARIWKLCESNPW 263
+KA +L ++E D ++ T +L+ A LG +A+Q + +I +L E+ P+
Sbjct: 165 NSLDKALRLLLQLEKDGIEIGVITYTVLVDWMANLGLIEEAEQLLVKISQLGEAPPF 221
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 81/352 (23%), Positives = 146/352 (41%), Gaps = 7/352 (1%)
Query: 94 VVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLL-ILYKRLDKKKVADVLLL 152
V + +LL G+ V A +F++M G+ N ++ L K D+L
Sbjct: 152 VTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNR 211
Query: 153 MEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGR 212
MEK+ + +Y LI S + ++V M I PD T L V GR
Sbjct: 212 MEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGR 271
Query: 213 KEKAEAMLKEMEGDNLKEHRWTCRLL---LPLYAELGKADQVARIWKLCESNPWLDVCMA 269
+AE +EM +L T LL L +Y+ L +A+++ P +
Sbjct: 272 VSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSI 331
Query: 270 AIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESG 329
I + K KVE +F MS+ +T YT L++ Y L+ +++ ++M G
Sbjct: 332 LINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCG 391
Query: 330 CHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHST 389
H + ++ L+ + G++EKA ++L Q+N +Y +I+ K G++
Sbjct: 392 VHPNIITYNVLLHGLCDNGKIEKA-LVILADMQKNGMDADIVTYNIIIRGMCKAGEVADA 450
Query: 390 EKIFHRMRQVGYVARFKQFQTLVQAYI--NAKTPAYGIRDRMRADNVFPNKA 439
I+ + G + + T++ + A + +M+ D + PN+
Sbjct: 451 WDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMKEDGILPNEC 502
Score = 38.9 bits (89), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 60/141 (42%), Gaps = 5/141 (3%)
Query: 91 RGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVL 150
R V Y L+ + AEE+F RM G N L L+ D K+ L
Sbjct: 359 RNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVL--LHGLCDNGKIEKAL 416
Query: 151 LL---MEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHY 207
++ M+K + +Y I+I ++ ++ + ++ +G+ PD T +
Sbjct: 417 VILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGL 476
Query: 208 VSGGRKEKAEAMLKEMEGDNL 228
G + +A+A+ ++M+ D +
Sbjct: 477 YKKGLRREADALFRKMKEDGI 497
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 68/326 (20%), Positives = 134/326 (41%), Gaps = 5/326 (1%)
Query: 94 VVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVA-DVLLL 152
V Y +++A + KA EV N M G N +L Y + K A L
Sbjct: 232 VTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKK 291
Query: 153 MEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGR 212
M + V+ +Y +L+D ++ ++ ++M G++P+ +T L + Y + G
Sbjct: 292 MRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGA 351
Query: 213 KEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCES---NPWLDVCMA 269
+ +L M + + + +L+ YA+ GK DQ ++ NP A
Sbjct: 352 LVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGA 411
Query: 270 AIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESG 329
I K +VE+A F++M Y +L+ + ++L+ +M + G
Sbjct: 412 VIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRG 471
Query: 330 CHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHST 389
+ + +++++ H + G V +++ L + + KP +Y +++ Y G +
Sbjct: 472 ICLNTIFFNSIIDSHCKEGRVIESEK-LFELMVRIGVKPNVITYNTLINGYCLAGKMDEA 530
Query: 390 EKIFHRMRQVGYVARFKQFQTLVQAY 415
K+ M VG + TL+ Y
Sbjct: 531 MKLLSGMVSVGLKPNTVTYSTLINGY 556
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/341 (17%), Positives = 136/341 (39%), Gaps = 36/341 (10%)
Query: 63 YASCLDLIAKLRGLQKAESYI-QKIPESFR-GEVVYRTLLANCVAGNNVKKAEEVFNRMK 120
Y + + ++ K ++ A Y Q I E G +VY +L+ N ++AEE+ M
Sbjct: 409 YGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEML 468
Query: 121 DKGFPVTSFACNQLLILYKRLDKKKVADVLL-LMEKENVKLTQFSYKILIDIKGQSNDLT 179
D+G + + N ++ + + + ++ L LM + VK +Y LI+ + +
Sbjct: 469 DRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMD 528
Query: 180 GMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLL 239
+++ M S G++P++ T + L Y R E A + KEME + T ++L
Sbjct: 529 EAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIIL 588
Query: 240 PLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLST 299
+ + + A+ ++ R++++ ++
Sbjct: 589 --------------------------------QGLFQTRRTAAAKELYVRITESGTQIEL 616
Query: 300 KHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLK 359
Y +L +K+ + + + + ++ ++ ++ G ++A + +
Sbjct: 617 STYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFV- 675
Query: 360 AQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG 400
A N P + +Y L+ + +G + +++F M G
Sbjct: 676 AFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNG 716
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 77/195 (39%), Gaps = 14/195 (7%)
Query: 248 ADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLK 307
AD+V LC + C A +++ A + K ++ +T LLK
Sbjct: 80 ADEVTP--DLCTYGILIGCCCRA-------GRLDLGFAALGNVIKKGFRVDAIAFTPLLK 130
Query: 308 VYADHKMLSKGKDLV-KQMAESGCHIGPLAWDALVKLHVEGGEVEKADSIL--LKAQQQN 364
K S D+V ++M E GC +++ L+K + ++A +L + +
Sbjct: 131 GLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGG 190
Query: 365 KFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT--PA 422
P SY +++ + K GD +H M G + + +++ A A+ A
Sbjct: 191 GSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKA 250
Query: 423 YGIRDRMRADNVFPN 437
+ + M + V P+
Sbjct: 251 MEVLNTMVKNGVMPD 265
>sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310,
mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2
SV=1
Length = 709
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 112/268 (41%), Gaps = 8/268 (2%)
Query: 153 MEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGR 212
+ + +K +Y L+ ++ L + +V M+ G+ PD T ++L YV+ GR
Sbjct: 330 LRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGR 389
Query: 213 KEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELG---KADQVARIWKLCESNPWLDVCMA 269
E A +LKEME +++ + + LL + + G K QV + K P
Sbjct: 390 WESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNV 449
Query: 270 AIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESG 329
I+ +GK N ++ A F RM + + L+ + H +++ + M G
Sbjct: 450 VIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRG 509
Query: 330 CHIGPLAWDALVKLHVEGGEVEKADSI--LLKAQQQNKFKPMFSSYMLIMDQYAKRGDIH 387
C ++ ++ + G+ E+ D + LL + P ++ ++D Y K G +
Sbjct: 510 CLPCATTYNIMINSY---GDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFN 566
Query: 388 STEKIFHRMRQVGYVARFKQFQTLVQAY 415
+ M+ VG + L+ AY
Sbjct: 567 DAIECLEEMKSVGLKPSSTMYNALINAY 594
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 83/348 (23%), Positives = 141/348 (40%), Gaps = 11/348 (3%)
Query: 61 RDYASCLDLIAKLRGLQKAESYIQKIPESFRG----EVVYRTLLANCVAGNNVKKAEEVF 116
R Y + L K L+ AES + ++ + RG E Y L+ V + A V
Sbjct: 340 RAYNALLKGYVKTGPLKDAESMVSEMEK--RGVSPDEHTYSLLIDAYVNAGRWESARIVL 397
Query: 117 NRMKDKGFPVTSFACNQLLILYK-RLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQS 175
M+ SF ++LL ++ R + +K VL M+ VK + Y ++ID G+
Sbjct: 398 KEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKF 457
Query: 176 NDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTC 235
N L + M SEGIEPD T L + GR AE M + ME T
Sbjct: 458 NCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTY 517
Query: 236 RLLLPLYAELGKADQVARIWKLCESN---PWLDVCMAAIEAWGKLNKVEEAEAVFKRMSK 292
+++ Y + + D + R+ +S P + ++ +GK + +A + M
Sbjct: 518 NIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKS 577
Query: 293 TWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEK 352
K S+ Y AL+ YA + + + + M G LA ++L+ E +
Sbjct: 578 VGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAE 637
Query: 353 ADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG 400
A ++ L+ ++N KP +Y +M + ++ M G
Sbjct: 638 AFAV-LQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIMSG 684
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 98/228 (42%), Gaps = 4/228 (1%)
Query: 107 NNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLL-LMEKENVKLTQFSY 165
N + A F+RM +G N L+ + + + VA+ + ME+ +Y
Sbjct: 458 NCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTY 517
Query: 166 KILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEG 225
I+I+ G M +++ MKS+GI P+ T L Y GR A L+EM+
Sbjct: 518 NIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKS 577
Query: 226 DNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESN---PWLDVCMAAIEAWGKLNKVEE 282
LK L+ YA+ G ++Q +++ S+ P L + I A+G+ + E
Sbjct: 578 VGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAE 637
Query: 283 AEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGC 330
A AV + M + K YT L+K K + ++M SGC
Sbjct: 638 AFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIMSGC 685
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/305 (20%), Positives = 135/305 (44%), Gaps = 16/305 (5%)
Query: 144 KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAIL 203
+K+ + LL +K+ LT +Y LI ++ND+ ++ M+ +G + D +++
Sbjct: 181 EKLYEAFLLSQKQT--LTPLTYNALIGACARNNDIEKALNLIAKMRQDGYQSDFVNYSLV 238
Query: 204 AKHYVSGGRKEKAEAML-----KEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLC 258
+ S R K ++++ KE+E D L+ ++ +A+ G + ++ +
Sbjct: 239 IQ---SLTRSNKIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFAKSGDPSKALQLLGMA 295
Query: 259 ESNPW---LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKML 315
++ ++ I A + EAEA+F+ + ++ K T+ Y ALLK Y L
Sbjct: 296 QATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPL 355
Query: 316 SKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYML 375
+ +V +M + G + L+ +V G E A I+LK + +P +
Sbjct: 356 KDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESA-RIVLKEMEAGDVQPNSFVFSR 414
Query: 376 IMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAY--INAKTPAYGIRDRMRADN 433
++ + RG+ T ++ M+ +G + + ++ + N A DRM ++
Sbjct: 415 LLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEG 474
Query: 434 VFPNK 438
+ P++
Sbjct: 475 IEPDR 479
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 72/366 (19%), Positives = 139/366 (37%), Gaps = 48/366 (13%)
Query: 94 VVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLL- 152
+ Y L+ C N+++KA + +M+ G+ S N L++ K+ V+LL
Sbjct: 198 LTYNALIGACARNNDIEKALNLIAKMRQDGY--QSDFVNYSLVIQSLTRSNKIDSVMLLR 255
Query: 153 ----MEKENVKL-TQFSYKILIDIKGQSND------LTGMDQ------------------ 183
+E++ ++L Q I++ +S D L GM Q
Sbjct: 256 LYKEIERDKLELDVQLVNDIIMGF-AKSGDPSKALQLLGMAQATGLSAKTATLVSIISAL 314
Query: 184 -----------VVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHR 232
+ E ++ GI+P + L K YV G + AE+M+ EME +
Sbjct: 315 ADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDE 374
Query: 233 WTCRLLLPLYAELGKADQVARIWKLCESN---PWLDVCMAAIEAWGKLNKVEEAEAVFKR 289
T LL+ Y G+ + + K E+ P V + + + ++ V K
Sbjct: 375 HTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKE 434
Query: 290 MSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGE 349
M K + Y ++ + L +M G + W+ L+ H + G
Sbjct: 435 MKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGR 494
Query: 350 VEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQ 409
A+ + +A ++ P ++Y ++++ Y + +++ +M+ G +
Sbjct: 495 HIVAEE-MFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHT 553
Query: 410 TLVQAY 415
TLV Y
Sbjct: 554 TLVDVY 559
Score = 33.9 bits (76), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 56/140 (40%), Gaps = 1/140 (0%)
Query: 94 VVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILY-KRLDKKKVADVLLL 152
V + TL+ A E MK G +S N L+ Y +R ++ + +
Sbjct: 550 VTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRV 609
Query: 153 MEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGR 212
M + +K + + LI+ G+ V++ MK G++PD T L K + +
Sbjct: 610 MTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDK 669
Query: 213 KEKAEAMLKEMEGDNLKEHR 232
+K + +EM K R
Sbjct: 670 FQKVPVVYEEMIMSGCKPDR 689
>sp|Q9FLD8|PP408_ARATH Pentatricopeptide repeat-containing protein At5g39980,
chloroplastic OS=Arabidopsis thaliana GN=At5g39980 PE=2
SV=1
Length = 678
Score = 75.5 bits (184), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 70/327 (21%), Positives = 143/327 (43%), Gaps = 11/327 (3%)
Query: 96 YRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLL--- 152
Y +L N + A +F+ M+ + + + L+ + K+ + D L
Sbjct: 158 YNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSF---GKEGMFDSALSWLQ 214
Query: 153 -MEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGG 211
ME++ V Y LI++ + D + + +K GI PD + Y
Sbjct: 215 KMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAK 274
Query: 212 RKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIW-KLCESNPWLDV--CM 268
+A ++KEM + + + LL +Y E K + ++ ++ E N LD+ C
Sbjct: 275 LFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCN 334
Query: 269 AAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAES 328
I+ +G+L+ V+EA+ +F + K + + Y +L+VY + ++ + L + M
Sbjct: 335 IMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRK 394
Query: 329 GCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHS 388
+ ++ ++K++ + E EKA + L++ Q +P +Y I+ + K G +
Sbjct: 395 DIEQNVVTYNTMIKIYGKTMEHEKATN-LVQEMQSRGIEPNAITYSTIISIWGKAGKLDR 453
Query: 389 TEKIFHRMRQVGYVARFKQFQTLVQAY 415
+F ++R G +QT++ AY
Sbjct: 454 AATLFQKLRSSGVEIDQVLYQTMIVAY 480
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 91/454 (20%), Positives = 193/454 (42%), Gaps = 68/454 (14%)
Query: 3 APDISIHSTL-TKYAEEG-------------NDLSRAEIALAMANL--RTRRM--YGKAL 44
APD +STL T + +EG D ++ L +NL +RR+ Y KA+
Sbjct: 187 APDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVL-YSNLIELSRRLCDYSKAI 245
Query: 45 QLSEWLE-TNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPES--FRGEVVYRTLLA 101
+ L+ + D + Y S +++ K + ++A I+++ E+ V Y TLL+
Sbjct: 246 SIFSRLKRSGITPDLVA--YNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLS 303
Query: 102 NCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLL---------- 151
V + +A VF MK+ + CN ++ +Y +LD K AD L
Sbjct: 304 VYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEP 363
Query: 152 --------------------------LMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVV 185
LM++++++ +Y +I I G++ + +V
Sbjct: 364 NVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLV 423
Query: 186 EAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAEL 245
+ M+S GIEP++ T + + + G+ ++A + +++ ++ + + ++ Y +
Sbjct: 424 QEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERV 483
Query: 246 GKADQVARI---WKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHY 302
G R+ KL ++ P AI K + EEA VF++ ++ + +
Sbjct: 484 GLMGHAKRLLHELKLPDNIP----RETAITILAKAGRTEEATWVFRQAFESGEVKDISVF 539
Query: 303 TALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQ 362
++ +Y+ ++ ++ ++M +G ++ + + E EKAD++ + Q+
Sbjct: 540 GCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREMQE 599
Query: 363 QNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRM 396
+ P + ++ Y+ + D E +F R+
Sbjct: 600 EGCVFPD-EVHFQMLSLYSSKKDFEMVESLFQRL 632
>sp|Q9LYT2|PP287_ARATH Pentatricopeptide repeat-containing protein At3g59040
OS=Arabidopsis thaliana GN=At3g59040 PE=2 SV=2
Length = 583
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 97/438 (22%), Positives = 172/438 (39%), Gaps = 49/438 (11%)
Query: 12 LTKYAEEGND-LSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASCLDLI 70
L +Y +G+ L R + + + + + ++ EWL +F E D+ +
Sbjct: 90 LRQYKTDGDQGLPRDLVLGTLVRFKQLKKWNLVSEILEWLRYQNWWNFSEIDFLMLITAY 149
Query: 71 AKLRGLQKAESYIQKIPE--SFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTS 128
KL AE + + + S + Y L+ + G AE +F RM+ G ++
Sbjct: 150 GKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQSSGPEPSA 209
Query: 129 FACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAM 188
+L + DK K E E V ++ L+D
Sbjct: 210 ITYQIILKTFVEGDKFK--------EAEEV------FETLLD-----------------E 238
Query: 189 KSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPL---YAEL 245
K ++PD ++ Y G EKA + M G + + T L+ Y E+
Sbjct: 239 KKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSFETSYKEV 298
Query: 246 GKA-DQVARIWKLCESNPWLDVCMAA--IEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHY 302
K DQ+ R S+ DV A I+A+G+ + EEA +VF+ M + + K Y
Sbjct: 299 SKIYDQMQR------SDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAY 352
Query: 303 TALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQ 362
LL +A M+ + K + K M ++ ++ +V ++E A+ K +
Sbjct: 353 NILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEK-FFKRIK 411
Query: 363 QNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKT-- 420
+ F+P +Y ++ YAK D+ +++ +MR G A T++ A K
Sbjct: 412 VDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKNFG 471
Query: 421 PAYGIRDRMRADNVFPNK 438
A G M + V P++
Sbjct: 472 SALGWYKEMESCGVPPDQ 489
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 106/262 (40%), Gaps = 5/262 (1%)
Query: 95 VYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLLME 154
+Y ++ N +KA +VF+ M KG P ++ N L+ K+V+ + M+
Sbjct: 249 MYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSF--ETSYKEVSKIYDQMQ 306
Query: 155 KENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKE 214
+ +++ SY +LI G++ V E M G+ P IL + G E
Sbjct: 307 RSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVE 366
Query: 215 KAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESN---PWLDVCMAAI 271
+A+ + K M D + W+ +L Y + + +K + + P + I
Sbjct: 367 QAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLI 426
Query: 272 EAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCH 331
+ + K N VE+ V+++M + K + T ++ K K+M G
Sbjct: 427 KGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKNFGSALGWYKEMESCGVP 486
Query: 332 IGPLAWDALVKLHVEGGEVEKA 353
A + L+ L E+E+A
Sbjct: 487 PDQKAKNVLLSLASTQDELEEA 508
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 118/268 (44%), Gaps = 4/268 (1%)
Query: 94 VVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLL 152
V Y TLL+ C +AE VF M D G + L+ + +L + +KV D+L
Sbjct: 248 VTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGE 307
Query: 153 MEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGR 212
M SY +L++ +S + V M++ G P+++T ++L + GR
Sbjct: 308 MASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGR 367
Query: 213 KEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWK-LCESN--PWLDVCMA 269
+ + EM+ N T +L+ ++ E G +V ++ + E N P ++
Sbjct: 368 YDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEG 427
Query: 270 AIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESG 329
I A GK E+A + + M+ S+K YT +++ + + + M E G
Sbjct: 428 IIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVG 487
Query: 330 CHIGPLAWDALVKLHVEGGEVEKADSIL 357
+ + +L+ GG V+++++IL
Sbjct: 488 SNPSIETFHSLLYSFARGGLVKESEAIL 515
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 66/319 (20%), Positives = 128/319 (40%), Gaps = 9/319 (2%)
Query: 145 KVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILA 204
K +V M + V + FSY LI+ G++ ++++ MK+E I P T +
Sbjct: 159 KCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVI 218
Query: 205 KHYVSGGRK-EKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESN-- 261
GG E + EM + ++ T LL A G D+ +++
Sbjct: 219 NACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGI 278
Query: 262 -PWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKD 320
P L +E +GKL ++E+ + M+ Y LL+ YA + +
Sbjct: 279 VPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMG 338
Query: 321 LVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQY 380
+ QM +GC + L+ L + G + + L+ + N P ++Y ++++ +
Sbjct: 339 VFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNT-DPDAATYNILIEVF 397
Query: 381 AKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINA--KTPAYGIRDRMRADNVFPNK 438
+ G +FH M + + ++ ++ A A I M A+++ P+
Sbjct: 398 GEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSS 457
Query: 439 ALAAQVAQVDAFRKTAVSE 457
A ++AF + A+ E
Sbjct: 458 --KAYTGVIEAFGQAALYE 474
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/274 (19%), Positives = 111/274 (40%), Gaps = 6/274 (2%)
Query: 63 YASCLDLIAKLRGLQKAESYIQKIPE--SFRGEVVYRTLLANCVAGNNVKKAEEVFNRMK 120
Y+ ++ KLR L+K + ++ S Y LL ++K+A VF++M+
Sbjct: 285 YSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQ 344
Query: 121 DKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLT 179
G + + LL L+ + + V + L M+ N +Y ILI++ G+
Sbjct: 345 AAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFK 404
Query: 180 GMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLL 239
+ + M E IEPD T + GG E A +L+ M +++ ++
Sbjct: 405 EVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVI 464
Query: 240 PLYAELGKADQVARIWKLCE---SNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKK 296
+ + ++ + SNP ++ + + ++ + V+E+EA+ R+ +
Sbjct: 465 EAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIP 524
Query: 297 LSTKHYTALLKVYADHKMLSKGKDLVKQMAESGC 330
+ + A ++ Y + M +S C
Sbjct: 525 RNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRC 558
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 3/131 (2%)
Query: 286 VFKRMSK-TWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLH 344
+FK M + W K + YT ++ + +L K ++ +M G ++ AL+ +
Sbjct: 127 LFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAY 186
Query: 345 VEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRG-DIHSTEKIFHRMRQVGYVA 403
G E + +L + + + K P +Y +++ A+ G D +F MR G
Sbjct: 187 GRNGRYETSLELLDRMKNE-KISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQP 245
Query: 404 RFKQFQTLVQA 414
+ TL+ A
Sbjct: 246 DIVTYNTLLSA 256
>sp|Q8RWS8|PP199_ARATH Pentatricopeptide repeat-containing protein At2g41720
OS=Arabidopsis thaliana GN=EMB2654 PE=2 SV=1
Length = 822
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 117/267 (43%), Gaps = 6/267 (2%)
Query: 153 MEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGR 212
M + + ++ +Y LI+ G S + +V + M G+ PD T I+ Y SG +
Sbjct: 204 MLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQ 263
Query: 213 KEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIW-----KLCESNPWLDVC 267
KA + + M+G ++ T +++ ++LG++ Q ++ K E P +
Sbjct: 264 YSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTF 323
Query: 268 MAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAE 327
+ + + ++E AVF+ M K + Y AL+ YA H M ++ + +
Sbjct: 324 TSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQ 383
Query: 328 SGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIH 387
+G +++ L+ + + KA + L +++ + KP +Y ++D Y G +
Sbjct: 384 NGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERR-KPNVVTYNALIDAYGSNGFLA 442
Query: 388 STEKIFHRMRQVGYVARFKQFQTLVQA 414
+IF +M Q G TL+ A
Sbjct: 443 EAVEIFRQMEQDGIKPNVVSVCTLLAA 469
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 78/356 (21%), Positives = 142/356 (39%), Gaps = 25/356 (7%)
Query: 94 VVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLD-KKKVADVLLL 152
V Y LL + KA+EVF M+ + N L+ Y + ++
Sbjct: 391 VSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQ 450
Query: 153 MEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGR 212
ME++ +K S L+ +S +D V+ A +S GI +++ Y++
Sbjct: 451 MEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAE 510
Query: 213 KEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCE--SNPWL-DVCMA 269
EKA A+ + M +K T +L+ + K + K E S P +V +
Sbjct: 511 LEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSS 570
Query: 270 AIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESG 329
+ A+ K +V EAE++F +M + YT++L Y + K +L +M +G
Sbjct: 571 VLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEMEANG 630
Query: 330 CHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNK-------FKPMFSS---------- 372
+A AL++ +GG+ +L+ ++ + F +FS+
Sbjct: 631 IEPDSIACSALMRAFNKGGQPSNV-FVLMDLMREKEIPFTGAVFFEIFSACNTLQEWKRA 689
Query: 373 --YMLIMDQYAKRGDIHSTEKIFHRMRQVGYV-ARFKQFQTLVQAYINAKTPAYGI 425
+ +MD Y I T ++ H + G V A K F ++ + + Y I
Sbjct: 690 IDLIQMMDPYLPSLSIGLTNQMLHLFGKSGKVEAMMKLFYKIIASGVGINLKTYAI 745
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/327 (20%), Positives = 128/327 (39%), Gaps = 9/327 (2%)
Query: 95 VYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLM 153
Y L+ C + N ++A EV +M D G N +L YK + K LM
Sbjct: 215 TYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELM 274
Query: 154 EKENVKLTQFSYKILI---DIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSG 210
+ V+ ++ I+I GQS+ + + ++E PD T + Y
Sbjct: 275 KGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAE-CRPDVVTFTSIMHLYSVK 333
Query: 211 GRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESN---PWLDVC 267
G E A+ + M + LK + + L+ YA G + + + N P +
Sbjct: 334 GEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSY 393
Query: 268 MAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAE 327
+ ++G+ + +A+ VF M K +K + Y AL+ Y + L++ ++ +QM +
Sbjct: 394 TCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQ 453
Query: 328 SGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIH 387
G ++ L+ + D++L AQ + ++Y + Y ++
Sbjct: 454 DGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRG-INLNTAAYNSAIGSYINAAELE 512
Query: 388 STEKIFHRMRQVGYVARFKQFQTLVQA 414
++ MR+ A F L+
Sbjct: 513 KAIALYQSMRKKKVKADSVTFTILISG 539
>sp|Q9ZUE9|PP149_ARATH Pentatricopeptide repeat-containing protein At2g06000
OS=Arabidopsis thaliana GN=At2g06000 PE=2 SV=1
Length = 536
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 129/297 (43%), Gaps = 25/297 (8%)
Query: 155 KENVKLTQFSYKILID--IKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGR 212
K N++ + ++Y +L K +DL G Q+ E MKS+G+ P++ L + G+
Sbjct: 96 KLNIRHSFWTYNLLTRSLCKAGLHDLAG--QMFECMKSDGVSPNNRLLGFLVSSFAEKGK 153
Query: 213 KEKAEAMLK---EMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMA 269
A A+L E+EG C ++ L L K D+V KL + + C
Sbjct: 154 LHFATALLLQSFEVEG--------CCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCND 205
Query: 270 A------IEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVK 323
I + K E+A + MS + Y L++ + L+K ++ K
Sbjct: 206 TKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFK 265
Query: 324 QM-AESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAK 382
+ + S C + + +++ + + G++ +A S LL + P ++ +++D YAK
Sbjct: 266 DVKSGSVCSPDVVTYTSMISGYCKAGKMREASS-LLDDMLRLGIYPTNVTFNVLVDGYAK 324
Query: 383 RGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKTPAYGIR--DRMRADNVFPN 437
G++ + E+I +M G F +L+ Y + G R + M A +FPN
Sbjct: 325 AGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPN 381
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/261 (19%), Positives = 120/261 (45%), Gaps = 5/261 (1%)
Query: 144 KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGI-EPDSSTQAI 202
+K ++L +M + +Y LI +SN+L ++ + +KS + PD T
Sbjct: 223 EKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTS 282
Query: 203 LAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARI-WKLCESN 261
+ Y G+ +A ++L +M + T +L+ YA+ G+ I K+
Sbjct: 283 MISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFG 342
Query: 262 PWLDVCM--AAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGK 319
+ DV + I+ + ++ +V + +++ M+ + Y+ L+ + L K +
Sbjct: 343 CFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKAR 402
Query: 320 DLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQ 379
+L+ Q+A P ++ ++ + G+V +A+ ++++ ++ K KP ++ +++
Sbjct: 403 ELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEAN-VIVEEMEKKKCKPDKITFTILIIG 461
Query: 380 YAKRGDIHSTEKIFHRMRQVG 400
+ +G + IFH+M +G
Sbjct: 462 HCMKGRMFEAVSIFHKMVAIG 482
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 84/393 (21%), Positives = 157/393 (39%), Gaps = 57/393 (14%)
Query: 12 LTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERD--------- 62
++ +AE+G + A A+ L++ + G + ++ L T KLD +E
Sbjct: 145 VSSFAEKG----KLHFATALL-LQSFEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLR 199
Query: 63 YASCLD------LIAKLRGLQKAESYIQ--KIPESFRGE---VVYRTLLANCVAGNNVKK 111
+ SC D LI L G+ KAE ++ + F E V Y TL+ N + K
Sbjct: 200 FQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNK 259
Query: 112 AEEVFNRMKDKGFP---VTSFACNQLLILYKRLDKKKVADVLL-LMEKENVKLTQFSYKI 167
A E+F +K V ++ ++ Y + K + A LL M + + T ++ +
Sbjct: 260 ASEMFKDVKSGSVCSPDVVTYT--SMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNV 317
Query: 168 LIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDN 227
L+D ++ ++ +++ M S G PD T L Y G+ + + +EM
Sbjct: 318 LVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARG 377
Query: 228 LKEHRWTCRLLL-------------PLYAELGKADQVARIWKLCESNPWLDVCMAAIEAW 274
+ + +T +L+ L +L D + + + NP I+ +
Sbjct: 378 MFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMY---NP-------VIDGF 427
Query: 275 GKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGP 334
K KV EA + + M K K +T L+ + + + + +M GC
Sbjct: 428 CKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDK 487
Query: 335 LAWDALVKLHVEGGEVEKA---DSILLKAQQQN 364
+ +L+ ++ G ++A + I K Q N
Sbjct: 488 ITVSSLLSCLLKAGMAKEAYHLNQIARKGQSNN 520
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 72.0 bits (175), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 75/383 (19%), Positives = 163/383 (42%), Gaps = 41/383 (10%)
Query: 60 ERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVY--RTLLANCVAGNNVKKAEEVFN 117
E Y S + ++ K L +A + + ++ R Y T++ + +A +
Sbjct: 273 EVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLE 332
Query: 118 RMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLLME--KENVKLTQFSYKILIDIKGQS 175
R + KG + A N +L +++ K V + L + E K++ +Y ILID+ ++
Sbjct: 333 RQRAKGSIPSVIAYNCILTCLRKMGK--VDEALKVFEEMKKDAAPNLSTYNILIDMLCRA 390
Query: 176 NDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTC 235
L ++ ++M+ G+ P+ T I+ + ++A AM +EM+
Sbjct: 391 GKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMD----------- 439
Query: 236 RLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWK 295
+K+C + + C + I+ GK+ +V++A V+++M +
Sbjct: 440 -------------------YKVCTPDE-ITFC-SLIDGLGKVGRVDDAYKVYEKMLDSDC 478
Query: 296 KLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADS 355
+ ++ YT+L+K + +H G + K M C + + + GE EK +
Sbjct: 479 RTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRA 538
Query: 356 ILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAY 415
+ + + + +F P SY +++ K G + T ++F+ M++ G V + + ++ +
Sbjct: 539 MFEEIKAR-RFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGF 597
Query: 416 INAK--TPAYGIRDRMRADNVFP 436
AY + + M+ P
Sbjct: 598 CKCGKVNKAYQLLEEMKTKGFEP 620
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/330 (18%), Positives = 140/330 (42%), Gaps = 12/330 (3%)
Query: 87 PESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KK 145
PES+ ++ ++A C N +++ M GF + C ++++ + +K ++
Sbjct: 98 PESYNSLLL---VMARC---RNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLRE 151
Query: 146 VADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAK 205
DV+ +M K + +Y LI N M + + M+ G EP L +
Sbjct: 152 GYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIR 211
Query: 206 HYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESN---P 262
+ GR + A ++L EM+ +L + + + ++GK D + + E+N P
Sbjct: 212 GFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKP 271
Query: 263 WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLV 322
+ I K N+++EA +F+ + K + T Y ++ Y + L+
Sbjct: 272 DEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLL 331
Query: 323 KQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAK 382
++ G +A++ ++ + G+V++A + + + P S+Y +++D +
Sbjct: 332 ERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVF--EEMKKDAAPNLSTYNILIDMLCR 389
Query: 383 RGDIHSTEKIFHRMRQVGYVARFKQFQTLV 412
G + + ++ M++ G + +V
Sbjct: 390 AGKLDTAFELRDSMQKAGLFPNVRTVNIMV 419
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/260 (20%), Positives = 114/260 (43%), Gaps = 8/260 (3%)
Query: 164 SYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEM 223
SY ILI ++ ++ +MK +G D+ I+ + G+ KA +L+EM
Sbjct: 554 SYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEM 613
Query: 224 EGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPW-LDVCM--AAIEAWGKLNKV 280
+ + T ++ A++ + D+ +++ +S L+V + + I+ +GK+ ++
Sbjct: 614 KTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRI 673
Query: 281 EEAEAVFKRMSKTWKKLSTKHYT--ALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWD 338
+EA + + + + K L+ YT +LL + +++ + M E C + +
Sbjct: 674 DEAYLILEELMQ--KGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYG 731
Query: 339 ALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQ 398
L+ + + KA + + Q+ KP SY ++ AK G+I +F R +
Sbjct: 732 ILINGLCKVRKFNKA-FVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKA 790
Query: 399 VGYVARFKQFQTLVQAYINA 418
G V + +++ N
Sbjct: 791 NGGVPDSACYNAMIEGLSNG 810
Score = 38.5 bits (88), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 16/119 (13%)
Query: 153 MEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGR 212
M+K+ +K + SY +I ++ ++ + + K+ G PDS+ + + +G R
Sbjct: 753 MQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNR 812
Query: 213 KEKAEAMLKEMEGDNLKEHRWTCRLLL----------------PLYAELGKADQVARIW 255
A ++ +E L H TC +LL + E GKA AR W
Sbjct: 813 AMDAFSLFEETRRRGLPIHNKTCVVLLDTLHKNDCLEQAAIVGAVLRETGKARHAARSW 871
Score = 35.4 bits (80), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 37/190 (19%), Positives = 76/190 (40%), Gaps = 19/190 (10%)
Query: 242 YAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKT-------- 293
Y G V I + E+ PW + A + E V +R+
Sbjct: 27 YTFEGNRQTVNDICNVLETGPWGPSAENTLSALSFKPQPEFVIGVLRRLKDVNRAIEYFR 86
Query: 294 WKKLSTK------HYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDA--LVKLHV 345
W + T+ Y +LL V A + ++ +M+ +G GP +V V
Sbjct: 87 WYERRTELPHCPESYNSLLLVMARCRNFDALDQILGEMSVAG--FGPSVNTCIEMVLGCV 144
Query: 346 EGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARF 405
+ ++ + ++ + ++ KF+P FS+Y ++ ++ +F +M+++GY
Sbjct: 145 KANKLREGYDVV-QMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTV 203
Query: 406 KQFQTLVQAY 415
F TL++ +
Sbjct: 204 HLFTTLIRGF 213
>sp|Q9C545|PPR72_ARATH Putative pentatricopeptide repeat-containing protein At1g43010
OS=Arabidopsis thaliana GN=At1g43010 PE=3 SV=1
Length = 257
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 104/212 (49%), Gaps = 8/212 (3%)
Query: 7 SIHSTLTKYAEEGNDLSRAEIALAMANLRTRRMYGKALQLSEWLETNKKLDFIERDYASC 66
SI L ++ ++G +++ + + + NL + + AL+ S+W+ + D D A+
Sbjct: 51 SIIPLLEQWRKQGYEVNPSHLRGLIKNLSDCKNFTTALEASKWMFKHSVFDNFPEDCAAQ 110
Query: 67 LDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAG-NNVKKAEEVFNRMKDKGFP 125
L L+ + GL++AE + IPE R Y LL++ V KAE F +M++ GF
Sbjct: 111 LHLVNTVLGLEEAEKMFKNIPEKMRD---YSVLLSSYTKPVRTVDKAEATFKKMRELGFL 167
Query: 126 VTSFACNQLLILYKRLDKKKVADVLLL-MEKENVKLTQFSYKILIDIKGQSNDLTGMDQV 184
+ + N ++ LY +L + + + LL ++K N+++ ++ ++ M++
Sbjct: 168 LKPYLFNSMICLYGQLQRLDMVEKLLYKLKKNNMEVGSLKVN---NVSRVYANINAMEKF 224
Query: 185 VEAMKSEGIEPDSSTQAILAKHYVSGGRKEKA 216
+ EGIE + T +AK Y G EKA
Sbjct: 225 KTWVSKEGIELERDTIVAMAKAYHRAGSIEKA 256
>sp|Q9LER0|PP381_ARATH Pentatricopeptide repeat-containing protein At5g14770,
mitochondrial OS=Arabidopsis thaliana GN=At5g14770 PE=2
SV=2
Length = 940
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/318 (20%), Positives = 147/318 (46%), Gaps = 12/318 (3%)
Query: 90 FRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLL-ILYKRLDKKKVAD 148
+ V Y TL+ + N + A ++++M +G PV L+ L+K D ++
Sbjct: 293 YPNHVTYTTLVDSLFKANIYRHALALYSQMVVRGIPVDLVVYTVLMDGLFKAGDLREAEK 352
Query: 149 VLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYV 208
++ ++N +Y L+D ++ DL+ + ++ M + + P+ T + + YV
Sbjct: 353 TFKMLLEDNQVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYSSMINGYV 412
Query: 209 SGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVA------RIWKLCESNP 262
G E+A ++L++ME N+ + +T ++ + GK + R+ + E+N
Sbjct: 413 KKGMLEEAVSLLRKMEDQNVVPNGFTYGTVIDGLFKAGKEEMAIELSKEMRLIGVEENNY 472
Query: 263 WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLV 322
LD A + ++ +++E + + K M L +YT+L+ V+
Sbjct: 473 ILD---ALVNHLKRIGRIKEVKGLVKDMVSKGVTLDQINYTSLIDVFFKGGDEEAALAWA 529
Query: 323 KQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAK 382
++M E G ++++ L+ ++ G+V AD K ++ +P +++ ++M+ K
Sbjct: 530 EEMQERGMPWDVVSYNVLISGMLKFGKV-GADWA-YKGMREKGIEPDIATFNIMMNSQRK 587
Query: 383 RGDIHSTEKIFHRMRQVG 400
+GD K++ +M+ G
Sbjct: 588 QGDSEGILKLWDKMKSCG 605
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 90/423 (21%), Positives = 161/423 (38%), Gaps = 57/423 (13%)
Query: 63 YASCLDLIAKLRGLQKAESYIQK------IPESFRGEVVYRTLLANCVAGNNVKKAEEVF 116
Y+S ++ K L++A S ++K +P F Y T++ + A E+
Sbjct: 404 YSSMINGYVKKGMLEEAVSLLRKMEDQNVVPNGF----TYGTVIDGLFKAGKEEMAIELS 459
Query: 117 NRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQS 175
M+ G ++ + L+ KR+ + K+V ++ M + V L Q +Y LID+ +
Sbjct: 460 KEMRLIGVEENNYILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDQINYTSLIDVFFKG 519
Query: 176 ND--------------------------LTGM--------DQVVEAMKSEGIEPDSSTQA 201
D ++GM D + M+ +GIEPD +T
Sbjct: 520 GDEEAALAWAEEMQERGMPWDVVSYNVLISGMLKFGKVGADWAYKGMREKGIEPDIATFN 579
Query: 202 ILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWK---LC 258
I+ G E + +M+ +K +C +++ + E GK ++ I L
Sbjct: 580 IMMNSQRKQGDSEGILKLWDKMKSCGIKPSLMSCNIVVGMLCENGKMEEAIHILNQMMLM 639
Query: 259 ESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWK---KLSTKHYTALLKVYADHKML 315
E +P L ++ K + A+A+FK KLS + Y L+ M
Sbjct: 640 EIHPNLTTYRIFLDTSSKHKR---ADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMT 696
Query: 316 SKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYML 375
K ++ M G + +++L+ + G V KA S + P ++Y
Sbjct: 697 KKAAMVMGDMEARGFIPDTVTFNSLMHGYFVGSHVRKALST-YSVMMEAGISPNVATYNT 755
Query: 376 IMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLV--QAYINAKTPAYGIRDRMRADN 433
I+ + G I +K M+ G + L+ QA I + I M AD
Sbjct: 756 IIRGLSDAGLIKEVDKWLSEMKSRGMRPDDFTYNALISGQAKIGNMKGSMTIYCEMIADG 815
Query: 434 VFP 436
+ P
Sbjct: 816 LVP 818
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/313 (21%), Positives = 132/313 (42%), Gaps = 16/313 (5%)
Query: 94 VVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLLM 153
V Y T+++ +A + + M G + + N L+ + ++ A L+
Sbjct: 164 VTYNTVISGLCEHGLADEAYQFLSEMVKMGILPDTVSYNTLIDGFCKVGNFVRAKALV-- 221
Query: 154 EKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRK 213
E +L ++ IL+ +L +++ M G +PD T + + GG+
Sbjct: 222 -DEISELNLITHTILLS---SYYNLHAIEEAYRDMVMSGFDPDVVTFSSIINRLCKGGKV 277
Query: 214 EKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKAD----QVARIWKLCESNPWLDVCMA 269
+ +L+EME ++ + T L+ L KA+ +A ++ +D+ +
Sbjct: 278 LEGGLLLREMEEMSVYPNHVTYTTLVD---SLFKANIYRHALALYSQMVVRGIPVDLVVY 334
Query: 270 AIEAWG--KLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAE 327
+ G K + EAE FK + + + + YTAL+ LS + ++ QM E
Sbjct: 335 TVLMDGLFKAGDLREAEKTFKMLLEDNQVPNVVTYTALVDGLCKAGDLSSAEFIITQMLE 394
Query: 328 SGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIH 387
+ + +++ +V+ G +E+A S+L K + QN F +Y ++D K G
Sbjct: 395 KSVIPNVVTYSSMINGYVKKGMLEEAVSLLRKMEDQNVVPNGF-TYGTVIDGLFKAGKEE 453
Query: 388 STEKIFHRMRQVG 400
++ MR +G
Sbjct: 454 MAIELSKEMRLIG 466
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 65/163 (39%), Gaps = 1/163 (0%)
Query: 95 VYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-KKVADVLLLM 153
VY TL+A KKA V M+ +GF + N L+ Y +K +M
Sbjct: 682 VYNTLIATLCKLGMTKKAAMVMGDMEARGFIPDTVTFNSLMHGYFVGSHVRKALSTYSVM 741
Query: 154 EKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRK 213
+ + +Y +I + + +D+ + MKS G+ PD T L G
Sbjct: 742 MEAGISPNVATYNTIIRGLSDAGLIKEVDKWLSEMKSRGMRPDDFTYNALISGQAKIGNM 801
Query: 214 EKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWK 256
+ + + EM D L T +L+ +A +GK Q + K
Sbjct: 802 KGSMTIYCEMIADGLVPKTSTYNVLISEFANVGKMLQARELLK 844
>sp|O80958|PP194_ARATH Pentatricopeptide repeat-containing protein At2g39230,
mitochondrial OS=Arabidopsis thaliana GN=LOJ PE=1 SV=1
Length = 867
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/361 (19%), Positives = 153/361 (42%), Gaps = 21/361 (5%)
Query: 62 DYASCLDLIAKLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKD 121
D LDL+ ++RG +P S + Y +++ V N+++A V + M
Sbjct: 289 DLVMALDLLREMRGKLG-------VPAS---QETYTSVIVAFVKEGNMEEAVRVMDEMVG 338
Query: 122 KGFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTG 180
G P++ A L+ Y + ++ K D+ ME+E + + + ++++ ++ ++
Sbjct: 339 FGIPMSVIAATSLVNGYCKGNELGKALDLFNRMEEEGLAPDKVMFSVMVEWFCKNMEMEK 398
Query: 181 MDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKE---HRWTCRL 237
+ MKS I P S +L + G K ++ E+ D+ + H + C
Sbjct: 399 AIEFYMRMKSVRIAPSS----VLVHTMIQGCLKAESPEAALEIFNDSFESWIAHGFMCNK 454
Query: 238 LLPLYAELGKADQVARIWKLCES---NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTW 294
+ L+ + GK D K+ E P + + A ++ ++ A ++F M +
Sbjct: 455 IFLLFCKQGKVDAATSFLKMMEQKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKG 514
Query: 295 KKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKAD 354
+ + Y+ L+ + +K D++ QM S + ++ ++ + G+ KA
Sbjct: 515 LEPNNFTYSILIDGFFKNKDEQNAWDVINQMNASNFEANEVIYNTIINGLCKVGQTSKAK 574
Query: 355 SILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQA 414
+L ++ ++ +SY I+D + K GD S + + M + G F +L+
Sbjct: 575 EMLQNLIKEKRYSMSCTSYNSIIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTSLING 634
Query: 415 Y 415
+
Sbjct: 635 F 635
Score = 38.9 bits (89), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 70/348 (20%), Positives = 130/348 (37%), Gaps = 25/348 (7%)
Query: 87 PESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKV 146
P +F Y L+ + + A +V N+M F N ++ ++ +
Sbjct: 517 PNNF----TYSILIDGFFKNKDEQNAWDVINQMNASNFEANEVIYNTIINGLCKVGQTSK 572
Query: 147 ADVLL--LMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILA 204
A +L L++++ ++ SY +ID + D + M G P+ T L
Sbjct: 573 AKEMLQNLIKEKRYSMSCTSYNSIIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTSLI 632
Query: 205 KHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAEL----GKADQVARIWKLCES 260
+ R + A M EM+ LK L LP Y L K + + + L
Sbjct: 633 NGFCKSNRMDLALEMTHEMKSMELK-------LDLPAYGALIDGFCKKNDMKTAYTLFSE 685
Query: 261 NPWL------DVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKM 314
P L V + I + L K++ A ++K+M YT ++
Sbjct: 686 LPELGLMPNVSVYNSLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMIDGLLKDGN 745
Query: 315 LSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYM 374
++ DL ++ + G + LV + G+ KA S +L+ ++ P Y
Sbjct: 746 INLASDLYSELLDLGIVPDEILHMVLVNGLSKKGQFLKA-SKMLEEMKKKDVTPNVLLYS 804
Query: 375 LIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKTPA 422
++ + + G+++ ++ M + G V F LV + K PA
Sbjct: 805 TVIAGHHREGNLNEAFRLHDEMLEKGIVHDDTVFNLLVSGRV-EKPPA 851
>sp|Q9SQU6|PP216_ARATH Pentatricopeptide repeat-containing protein At3g06430,
chloroplastic OS=Arabidopsis thaliana GN=EMB2750 PE=2
SV=1
Length = 486
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 80/359 (22%), Positives = 149/359 (41%), Gaps = 15/359 (4%)
Query: 68 DLIAKLRGLQKAESYIQKIPESF--RGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFP 125
DLIAK + LQ E + ++F E Y LL +A+++F+ M ++G
Sbjct: 97 DLIAKKQWLQALEVFDMLREQTFYQPKEGTYMKLLVLLGKSGQPNRAQKLFDEMLEEGLE 156
Query: 126 VTSFACNQLLILYKRLDKKKVADVLLLMEK----ENVKLTQFSYKILIDIKGQSNDLTGM 181
T LL Y R + D +++K + F+Y L+ ++ +
Sbjct: 157 PTVELYTALLAAYTR--SNLIDDAFSILDKMKSFPQCQPDVFTYSTLLKACVDASQFDLV 214
Query: 182 DQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEM-EGDNLKEHRWTCRLLLP 240
D + + M I P++ TQ I+ Y GR ++ E +L +M K WT ++L
Sbjct: 215 DSLYKEMDERLITPNTVTQNIVLSGYGRVGRFDQMEKVLSDMLVSTACKPDVWTMNIILS 274
Query: 241 LYAELGKADQVARIWKLCES---NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKL 297
++ +GK D + ++ + P I ++GK ++ +V + M K
Sbjct: 275 VFGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGSYGKKRMYDKMSSVMEYMRKLEFPW 334
Query: 298 STKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKA-DSI 356
+T Y +++ +AD + QM G + L+ + G K S+
Sbjct: 335 TTSTYNNIIEAFADVGDAKNMELTFDQMRSEGMKADTKTFCCLINGYANAGLFHKVISSV 394
Query: 357 LLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAY 415
L A+ + F Y ++ AK D+ E+++ RM++ V + F+ +V+AY
Sbjct: 395 QLAAKFEIPENTAF--YNAVISACAKADDLIEMERVYIRMKERQCVCDSRTFEIMVEAY 451
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/357 (19%), Positives = 147/357 (41%), Gaps = 59/357 (16%)
Query: 72 KLRGLQKAESYIQKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGF--PVTSF 129
KL KA ++ + E+ L++ +A +A EVF+ ++++ F P
Sbjct: 77 KLDRRSKANGWVNTVTET----------LSDLIAKKQWLQALEVFDMLREQTFYQPKEGT 126
Query: 130 ACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMK 189
L++L K + + M +E ++ T Y L+ +SN + +++ MK
Sbjct: 127 YMKLLVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLIDDAFSILDKMK 186
Query: 190 S-EGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKA 248
S +PD T + L K V + + +++ KEM+ + + T ++L Y +G+
Sbjct: 187 SFPQCQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRVGRF 246
Query: 249 DQVARIWK------LCESNPW-LDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKH 301
DQ+ ++ C+ + W +++ ++ +G + K++ E+ +++ + T+
Sbjct: 247 DQMEKVLSDMLVSTACKPDVWTMNIILSV---FGNMGKIDMMESWYEKFRNFGIEPETRT 303
Query: 302 YTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQ 361
+ L+ Y +M K +++ M
Sbjct: 304 FNILIGSYGKKRMYDKMSSVMEYM------------------------------------ 327
Query: 362 QQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINA 418
++ +F S+Y I++ +A GD + E F +MR G A K F L+ Y NA
Sbjct: 328 RKLEFPWTTSTYNNIIEAFADVGDAKNMELTFDQMRSEGMKADTKTFCCLINGYANA 384
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/334 (20%), Positives = 138/334 (41%), Gaps = 8/334 (2%)
Query: 91 RGEVVYRTLLAN--CVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLI-LYKRLDKKKVA 147
R ++V + L N C+ G V +A + +RM + GF +L L K +
Sbjct: 172 RPDLVTVSTLINGLCLKGR-VSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALAL 230
Query: 148 DVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHY 207
D+ ME+ N+K + Y I+ID + + M+ +GI+ D T + L
Sbjct: 231 DLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGL 290
Query: 208 VSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESN---PWL 264
+ G+ + ML+EM G N+ T L+ ++ + GK + ++ + P
Sbjct: 291 CNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDT 350
Query: 265 DVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQ 324
+ I+ + K N + EA +F M + Y+ L+ Y K + G L ++
Sbjct: 351 ITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFRE 410
Query: 325 MAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRG 384
++ G + ++ LV + G++ A L + P +Y +++D G
Sbjct: 411 ISSKGLIPNTITYNTLVLGFCQSGKLNAAKE-LFQEMVSRGVPPSVVTYGILLDGLCDNG 469
Query: 385 DIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINA 418
+++ +IF +M++ + ++ NA
Sbjct: 470 ELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNA 503
Score = 58.9 bits (141), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/256 (21%), Positives = 103/256 (40%), Gaps = 33/256 (12%)
Query: 163 FSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKE 222
+Y LID + N L +Q+ + M S+G EPD T +IL Y R + + +E
Sbjct: 351 ITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFRE 410
Query: 223 MEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEE 282
+ L + T L + C+S GKLN +E
Sbjct: 411 ISSKGLIPNTITYNTL---------------VLGFCQS--------------GKLNAAKE 441
Query: 283 AEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVK 342
+F+ M S Y LL D+ L+K ++ ++M +S +G ++ ++
Sbjct: 442 ---LFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIH 498
Query: 343 LHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYV 402
+V+ A S+ + KP +Y +++ K+G + + +F +M++ G
Sbjct: 499 GMCNASKVDDAWSLFCSLSDKG-VKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCT 557
Query: 403 ARFKQFQTLVQAYINA 418
+ L++A++
Sbjct: 558 PDDFTYNILIRAHLGG 573
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 70/164 (42%), Gaps = 8/164 (4%)
Query: 84 QKIPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK 143
+ +P S V Y LL + KA E+F +M+ + N +I++ +
Sbjct: 449 RGVPPSV---VTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYN--IIIHGMCNA 503
Query: 144 KKVAD---VLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQ 200
KV D + + + VK +Y ++I + L+ D + MK +G PD T
Sbjct: 504 SKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTY 563
Query: 201 AILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAE 244
IL + ++ G + +++EM+ T ++++ + ++
Sbjct: 564 NILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDMLSD 607
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110, chloroplastic
OS=Arabidopsis thaliana GN=EMB1270 PE=2 SV=2
Length = 1440
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 76/407 (18%), Positives = 172/407 (42%), Gaps = 13/407 (3%)
Query: 63 YASCLDLIAKLRGLQKAESYIQKIPESFRGEVV--YRTLLANCVAGNNVKKAEEVFNRMK 120
Y ++ K + QKAES + + +S R + + +L++ ++A +FN M
Sbjct: 755 YTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMM 814
Query: 121 DKGFPVTSFACNQLL---ILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSND 177
G T + N LL + RL++ V V+ ++ K+++ S +++D ++ +
Sbjct: 815 RDGPSPTVESINILLHALCVDGRLEELYV--VVEELQDMGFKISKSSILLMLDAFARAGN 872
Query: 178 LTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRL 237
+ + ++ +MK+ G P ++ + G R AE M+ EME N K
Sbjct: 873 IFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNS 932
Query: 238 LLPLYAELGKADQVARIWKLCESN---PWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTW 294
+L +Y + + ++++ + P I + + + EE + ++M
Sbjct: 933 MLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLG 992
Query: 295 KKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKAD 354
Y +L+ + K L + + L +++ G + + ++K+ + G KA+
Sbjct: 993 LDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAE 1052
Query: 355 SILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQA 414
LL+ + +P ++ L+M Y+ G+ EK+ ++ + +++ A
Sbjct: 1053 K-LLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDA 1111
Query: 415 YINAKTPAYGIRD--RMRADNVFPNKALAAQVAQVDAFRKTAVSELL 459
Y+ +K GI M+ + + P+ + + +F K + +L
Sbjct: 1112 YLRSKDYNSGIERLLEMKKEGLEPDHRIWTCFVRAASFSKEKIEVML 1158
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/338 (17%), Positives = 144/338 (42%), Gaps = 20/338 (5%)
Query: 90 FRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADV 149
F +Y TLL CVA + +A +VF+ ++ G + C ++++Y +L + A
Sbjct: 678 FGSSTMYETLLHCCVANEHYAEASQVFSDLRLSGCEASESVCKSMVVVYCKLGFPETAHQ 737
Query: 150 LLLMEKENVKLTQFS----YKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAK 205
++ + K F+ Y +I+ G+ + VV ++ G PD T L
Sbjct: 738 VV--NQAETKGFHFACSPMYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMS 795
Query: 206 HYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARI--------WKL 257
Y G E+A A+ M D + +LL G+ +++ + +K+
Sbjct: 796 AYAQCGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKI 855
Query: 258 CESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSK 317
+S+ L ++A+ + + E + ++ M + + Y ++++ K +
Sbjct: 856 SKSSILL-----MLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRD 910
Query: 318 GKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIM 377
+ +V +M E+ + W++++K++ + +K + + ++ +P ++Y ++
Sbjct: 911 AEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETG-LEPDETTYNTLI 969
Query: 378 DQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAY 415
Y + + +MR +G + +++L+ A+
Sbjct: 970 IMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAF 1007
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 88/190 (46%), Gaps = 5/190 (2%)
Query: 234 TCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAA----IEAWGKLNKVEEAEAVFKR 289
C+ ++ +Y +LG + ++ E+ + C IEA+GK ++AE+V
Sbjct: 718 VCKSMVVVYCKLGFPETAHQVVNQAETKGFHFACSPMYTDIIEAYGKQKLWQKAESVVGN 777
Query: 290 MSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGE 349
+ ++ + K + +L+ YA + + + M G + + L+ G
Sbjct: 778 LRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGR 837
Query: 350 VEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQ 409
+E+ ++++ Q FK SS +L++D +A+ G+I +KI+ M+ GY+ + ++
Sbjct: 838 LEEL-YVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYR 896
Query: 410 TLVQAYINAK 419
+++ K
Sbjct: 897 MMIELLCKGK 906
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/310 (19%), Positives = 118/310 (38%), Gaps = 39/310 (12%)
Query: 94 VVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLLM 153
+ Y TLL+ C +N+ A +VF M
Sbjct: 298 ITYNTLLSACSRDSNLDGAVKVFED----------------------------------M 323
Query: 154 EKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRK 213
E + ++Y +I + G+ +++ ++ +G PD+ T L +
Sbjct: 324 EAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNT 383
Query: 214 EKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWK----LCESNPWLDVCMA 269
EK + + ++M+ + T ++ +Y + G+ D +++K L NP
Sbjct: 384 EKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTV 443
Query: 270 AIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESG 329
I++ GK N+ EA A+ M K + + Y+AL+ YA + +D M SG
Sbjct: 444 LIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSG 503
Query: 330 CHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHST 389
LA+ ++ + + G E KA L + + P ++ Y L++ K
Sbjct: 504 TKPDNLAYSVMLDVLLRGNETRKAWG-LYRDMISDGHTPSYTLYELMILGLMKENRSDDI 562
Query: 390 EKIFHRMRQV 399
+K M ++
Sbjct: 563 QKTIRDMEEL 572
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 71/345 (20%), Positives = 136/345 (39%), Gaps = 15/345 (4%)
Query: 107 NNVKKAEEVFNRMKDK-GFPVTSFACNQLLILYKRLDK-KKVADVLLLMEKENVKLTQFS 164
N A E+F R + G V + N ++ +Y R K K +++ M + S
Sbjct: 205 NQESLAVEIFTRAEPTVGDRVQVY--NAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLIS 262
Query: 165 YKILIDIKGQSNDLTG--MDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKE 222
+ LI+ + +S LT ++++ +++ G+ PD+ T L + A + ++
Sbjct: 263 FNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFED 322
Query: 223 MEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVCM---AAIEAWGKLNK 279
ME + WT ++ +Y G A + R++ E + + + + A+ +
Sbjct: 323 MEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERN 382
Query: 280 VEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQM-AESGCHIGPLAWD 338
E+ + V+++M K Y ++ +Y L L K M SG + + +
Sbjct: 383 TEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYT 442
Query: 339 ALV-KLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMR 397
L+ L VE A L+ KP +Y ++ YAK G E F M
Sbjct: 443 VLIDSLGKANRTVEAA--ALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCML 500
Query: 398 QVGYVARFKQFQTLVQAYI--NAKTPAYGIRDRMRADNVFPNKAL 440
+ G + ++ + N A+G+ M +D P+ L
Sbjct: 501 RSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMISDGHTPSYTL 545
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 8/133 (6%)
Query: 90 FRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADV 149
F V Y +LL N +K +EV+ +M+ GF N ++ +Y K+ D+
Sbjct: 364 FPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMY---GKQGQLDL 420
Query: 150 LLLMEKENVKLT-----QFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILA 204
L + K+ L+ +Y +LID G++N ++ M GI+P T + L
Sbjct: 421 ALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALI 480
Query: 205 KHYVSGGRKEKAE 217
Y G++E+AE
Sbjct: 481 CGYAKAGKREEAE 493
Score = 37.4 bits (85), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 70/346 (20%), Positives = 129/346 (37%), Gaps = 54/346 (15%)
Query: 94 VVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLIL----YKRLD--KKKVA 147
+ Y +L + GN +KA ++ M G S+ +L+IL R D +K +
Sbjct: 509 LAYSVMLDVLLRGNETRKAWGLYRDMISDGH-TPSYTLYELMILGLMKENRSDDIQKTIR 567
Query: 148 DVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHY 207
D+ L ++++ + +KG+ DL + ++ + G E ++ T + Y
Sbjct: 568 DMEELCGMNPLEISS------VLVKGECFDLAA--RQLKVAITNGYELENDTLLSILGSY 619
Query: 208 VSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVC 267
S GR +A +L + LKEH + L +
Sbjct: 620 SSSGRHSEAFELL-----EFLKEHASGSKRL---------------------------IT 647
Query: 268 MAAIEAWGKLNKVEEA--EAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQM 325
A I K+N + A E W S+ Y LL ++ ++ + +
Sbjct: 648 EALIVLHCKVNNLSAALDEYFADPCVHGWCFGSSTMYETLLHCCVANEHYAEASQVFSDL 707
Query: 326 AESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGD 385
SGC ++V ++ + G E A ++ +A+ + Y I++ Y K+
Sbjct: 708 RLSGCEASESVCKSMVVVYCKLGFPETAHQVVNQAETKGFHFACSPMYTDIIEAYGKQKL 767
Query: 386 IHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKTPAYGIRDRMRA 431
E + +RQ G K + +L+ AY G +R RA
Sbjct: 768 WQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQC-----GCYERARA 808
>sp|Q8S8P6|PP180_ARATH Pentatricopeptide repeat-containing protein At2g32630
OS=Arabidopsis thaliana GN=At2g32630 PE=3 SV=1
Length = 624
Score = 68.9 bits (167), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 74/383 (19%), Positives = 151/383 (39%), Gaps = 43/383 (11%)
Query: 109 VKKAEEVFNRMKDKGFPVTSFACNQLLILY-KRLDKKKVADVLLLMEKENVKLTQFSYKI 167
V+K++++ KG ++ N ++ Y K+ D V VL +M+K+ V + +Y +
Sbjct: 240 VEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRDFSGVEGVLKVMKKDGVVYNKVTYTL 299
Query: 168 LIDIKGQSNDLTGMDQVVEAMKSEGIE--------------------------------- 194
L+++ ++ ++ +++ + M+ GIE
Sbjct: 300 LMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTEKG 359
Query: 195 --PDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVA 252
P S T L G AE ++ EM+ + + L+ Y G D+ +
Sbjct: 360 LSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEAS 419
Query: 253 RIWKLCESNPW-LDV--CMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVY 309
I+ + E + DV C + +L + +EA+ RM + KLST YT L+ VY
Sbjct: 420 MIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVY 479
Query: 310 ADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPM 369
+ + K L +M+ G + ++ ++ + + G++++A L + N P
Sbjct: 480 CKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARK-LRANMEANGMDPD 538
Query: 370 FSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINA--KTPAYGIRD 427
+Y ++ ++ ++F M G + ++ A A+G+ D
Sbjct: 539 SYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYD 598
Query: 428 RM-RADNVFPNKALAAQVAQVDA 449
M R NK A + + +
Sbjct: 599 EMKRKGYTIDNKVYTALIGSMHS 621
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/364 (18%), Positives = 151/364 (41%), Gaps = 42/364 (11%)
Query: 115 VFNRMKDKGFPVTSFACNQLLILYKRLDKKKVA-DVLLLMEKENVKLTQFSYKILIDIKG 173
VF+ M KG + +C L+ K+ + + ++ M VK+T +S I+++
Sbjct: 176 VFDYMVKKGLSIDERSCIVFLVAAKKRRRIDLCLEIFRRMVDSGVKITVYSLTIVVEGLC 235
Query: 174 QSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRW 233
+ ++ ++++ +GI+P++ T + YV E +LK M+ D + ++
Sbjct: 236 RRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRDFSGVEGVLKVMKKDGVVYNKV 295
Query: 234 TCRLLLPLYAELGKADQVARIW-KLCESNPWLDV-CMAAIEAWG-KLNKVEEAEAVFKRM 290
T LL+ L + GK +++ ++ E DV ++ +W + ++ A +F +
Sbjct: 296 TYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKGNMKRAFLLFDEL 355
Query: 291 SKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEV 350
++ S+ Y AL+ + + L+ +M G +I + ++ L+ + G V
Sbjct: 356 TEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMV 415
Query: 351 EKADSILLKAQQQNKFKP-MFS----------------------------------SYML 375
++A S++ +Q F+ +F+ SY
Sbjct: 416 DEA-SMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTN 474
Query: 376 IMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAK--TPAYGIRDRMRADN 433
++D Y K G++ +++F M G + ++ AY A +R M A+
Sbjct: 475 LIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANG 534
Query: 434 VFPN 437
+ P+
Sbjct: 535 MDPD 538
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 68.9 bits (167), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 71/356 (19%), Positives = 141/356 (39%), Gaps = 16/356 (4%)
Query: 94 VVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLL-ILYKRLDKKKVADVLLL 152
+ TL+ V A + +RM + GF +L ++ K ++L
Sbjct: 194 ITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRK 253
Query: 153 MEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGR 212
ME+ N+KL Y I+ID + L + M+ +G + D T L + + GR
Sbjct: 254 MEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGR 313
Query: 213 KEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGK---ADQVARIWKLCESNPWLDVCMA 269
+ +L++M + + T +L+ + + GK ADQ+ + P +
Sbjct: 314 WDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNS 373
Query: 270 AIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESG 329
I+ + K N++EEA + M + L+ Y + G +L ++M+ G
Sbjct: 374 LIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRG 433
Query: 330 CHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHST 389
+ ++ LV+ + G++E A L + + +P SY +++D G++
Sbjct: 434 VIANTVTYNTLVQGFCQSGKLEVAKK-LFQEMVSRRVRPDIVSYKILLDGLCDNGELEKA 492
Query: 390 EKIFHRMRQVGYVARFKQFQTLVQAYINA-----------KTPAYGIRDRMRADNV 434
+IF ++ + + ++ NA P G++ RA N+
Sbjct: 493 LEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNI 548
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 78/338 (23%), Positives = 141/338 (41%), Gaps = 47/338 (13%)
Query: 51 ETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIP-ESFRGEVV-YRTLLAN-CVAGN 107
E N KLD ++ Y+ +D + K L A + ++ + F+ +++ Y TL+ C AG
Sbjct: 256 ERNIKLDAVK--YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGR 313
Query: 108 NVKKAEEVFNRMKDKGFP-VTSFACNQLLILYKRLDKKKVADVLLL-MEKENVKLTQFSY 165
A+ + + +K K P V +F+ L+ + + K + AD LL M + + +Y
Sbjct: 314 WDDGAKLLRDMIKRKISPNVVTFSV--LIDSFVKEGKLREADQLLKEMMQRGIAPNTITY 371
Query: 166 KILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEG 225
LID + N L Q+V+ M S+G +PD T IL Y R + + +EM
Sbjct: 372 NSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSL 431
Query: 226 DNLKEHRWTCRLLLPLYAELGKADQVARIWK--------------------LCESNPW-- 263
+ + T L+ + + GK + ++++ LC++
Sbjct: 432 RGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEK 491
Query: 264 --------------LDVCMAAIEAWGKLN--KVEEAEAVFKRMSKTWKKLSTKHYTALLK 307
LD+ + I G N KV++A +F + KL + Y ++
Sbjct: 492 ALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMIS 551
Query: 308 VYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHV 345
LSK L ++M E G L ++ L++ H+
Sbjct: 552 ELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHL 589
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 87/212 (41%), Gaps = 20/212 (9%)
Query: 218 AMLKEMEGDNLKEHRWT----------CRLLLPLYAELGKADQVARIWKLCESNPWLD-V 266
A+ K+ME + +T CR L ++ +GK ++ N L+ +
Sbjct: 109 ALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGL 168
Query: 267 CMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMA 326
C+ +V EA + RM + K + L+ + +S L+ +M
Sbjct: 169 CLEC--------RVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMV 220
Query: 327 ESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDI 386
E+G + + ++ + + G+ A +L K +++N K Y +I+D K G +
Sbjct: 221 ETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERN-IKLDAVKYSIIIDGLCKDGSL 279
Query: 387 HSTEKIFHRMRQVGYVARFKQFQTLVQAYINA 418
+ +F+ M G+ A + TL+ + NA
Sbjct: 280 DNAFNLFNEMEIKGFKADIITYNTLIGGFCNA 311
Score = 36.2 bits (82), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 71/160 (44%), Gaps = 6/160 (3%)
Query: 94 VVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVAD---VL 150
V Y+ LL ++KA E+F +++ + ++I++ + KV D +
Sbjct: 474 VSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGI--YMIIIHGMCNASKVDDAWDLF 531
Query: 151 LLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSG 210
+ + VKL +Y I+I + + L+ D + M EG PD T IL + ++
Sbjct: 532 CSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGD 591
Query: 211 GRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQ 250
A +++EM+ T ++++ + + G+ D+
Sbjct: 592 DDATTAAELIEEMKSSGFPADVSTVKMVINMLSS-GELDK 630
>sp|Q8GZ63|PP397_ARATH Pentatricopeptide repeat-containing protein At5g25630
OS=Arabidopsis thaliana GN=At5g25630 PE=2 SV=2
Length = 574
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/346 (21%), Positives = 151/346 (43%), Gaps = 17/346 (4%)
Query: 107 NNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLL--LMEKENVKLTQF- 163
N++ A + +MK+ G T+ N L+ Y K + + LL ++E+ NV +
Sbjct: 129 GNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEEGNVDVGPNI 188
Query: 164 -SYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKE 222
++ +L+ + + +VV+ M+ G+ PD+ T +A YV G +AE+ + E
Sbjct: 189 RTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIATCYVQKGETVRAESEVVE 248
Query: 223 --MEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKL-----CESNPWLDVCMAAIEAWG 275
+ + K + TC +++ Y G+ R + E+N L V + I +
Sbjct: 249 KMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRVEAN--LVVFNSLINGFV 306
Query: 276 KLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPL 335
++ + + V M + K Y+ ++ ++ + K + K+M ++G
Sbjct: 307 EVMDRDGIDEVLTLMKECNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAH 366
Query: 336 AWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHR 395
A+ L K +V E +KA+ +L +++ P + ++ + G + ++F++
Sbjct: 367 AYSILAKGYVRAKEPKKAEELLETLIVESR--PNVVIFTTVISGWCSNGSMDDAMRVFNK 424
Query: 396 MRQVGYVARFKQFQTLVQAYINAKTP--AYGIRDRMRADNVFPNKA 439
M + G K F+TL+ Y+ K P A + MR V P +
Sbjct: 425 MCKFGVSPNIKTFETLMWGYLEVKQPWKAEEVLQMMRGCGVKPENS 470
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 6/169 (3%)
Query: 282 EAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALV 341
EA+ VFK +++T + S YT LL K +V ++ +SG + + ++A++
Sbjct: 63 EAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQSGTKLDSIFFNAVI 122
Query: 342 KLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGY 401
E G +E A LLK ++ P S+Y ++ Y G + ++ M + G
Sbjct: 123 NAFSESGNMEDAVQALLKMKELG-LNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEEGN 181
Query: 402 V---ARFKQFQTLVQAYINAK--TPAYGIRDRMRADNVFPNKALAAQVA 445
V + F LVQA+ K A+ + +M V P+ +A
Sbjct: 182 VDVGPNIRTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIA 230
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/307 (19%), Positives = 131/307 (42%), Gaps = 8/307 (2%)
Query: 138 YKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDS 197
YK +D ++ M+ + ++ F+Y LI + +++ M I P+
Sbjct: 271 YKHMDD--ALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNV 328
Query: 198 STQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKL 257
T + L +V G+ +AE + EM ++ +T L+ + + D+ +++L
Sbjct: 329 VTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFEL 388
Query: 258 CESN---PWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKM 314
S P + I+ + K +VEE +F+ MS+ +T YT L+ + +
Sbjct: 389 MISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARD 448
Query: 315 LSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYM 374
+ + KQM G H L ++ L+ + G++ KA ++ + Q++ +P +Y
Sbjct: 449 CDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKA-MVVFEYLQRSTMEPDIYTYN 507
Query: 375 LIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYI--NAKTPAYGIRDRMRAD 432
++++ K G + ++F + G + T++ + +K A + +M+ D
Sbjct: 508 IMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKED 567
Query: 433 NVFPNKA 439
PN
Sbjct: 568 GPLPNSG 574
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 73/351 (20%), Positives = 143/351 (40%), Gaps = 12/351 (3%)
Query: 96 YRTLLANCVAGN-NVKKAEEVFNRM-KDKGFP-VTSFACNQLLILYKRLDK-KKVADVLL 151
YR +L N ++ V A ++F M K + FP + F N+LL +++K + V +
Sbjct: 50 YREILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEF--NKLLSAVAKMNKFELVISLGE 107
Query: 152 LMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGG 211
M+ + ++Y I I+ + + L+ V+ M G EPD T + L Y
Sbjct: 108 QMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSK 167
Query: 212 RKEKAEAMLKEMEGDNLKEHRWTCRLLL-PLYAELGKADQVARIWKLCE--SNPWLDVCM 268
R A A++ +M K +T L+ L+ ++ VA + ++ + P L
Sbjct: 168 RISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYG 227
Query: 269 AAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAES 328
+ K ++ A ++ K+M K + Y ++ +K + +L +M
Sbjct: 228 TVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNK 287
Query: 329 GCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHS 388
G + +L+ G A S LL + K P ++ ++D + K G +
Sbjct: 288 GIRPDVFTYSSLISCLCNYGRWSDA-SRLLSDMIERKINPNVVTFSALIDAFVKEGKLVE 346
Query: 389 TEKIFHRMRQVGYVARFKQFQTLVQAYI--NAKTPAYGIRDRMRADNVFPN 437
EK++ M + + +L+ + + A + + M + + FPN
Sbjct: 347 AEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPN 397
Score = 39.7 bits (91), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 69/329 (20%), Positives = 134/329 (40%), Gaps = 35/329 (10%)
Query: 49 WLETNKKL-DFIER-------DYASCLDLIAKLRGLQKAES-YIQKIPESFRGEV-VYRT 98
W + ++ L D IER +++ +D K L +AE Y + I S ++ Y +
Sbjct: 309 WSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSS 368
Query: 99 LLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDK-----KKVADVLLL- 152
L+ + + +A+ +F M K C ++ Y L K K+V + + L
Sbjct: 369 LINGFCMHDRLDEAKHMFELMISKD-------CFPNVVTYSTLIKGFCKAKRVEEGMELF 421
Query: 153 --MEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSG 210
M + + +Y LI Q+ D V + M S G+ P+ T IL
Sbjct: 422 REMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKN 481
Query: 211 GRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKL-CE-----SNPWL 264
G+ KA + + ++ ++ +T +++ + KA +V W+L C +P +
Sbjct: 482 GKLAKAMVVFEYLQRSTMEPDIYTYNIMI---EGMCKAGKVEDGWELFCNLSLKGVSPNV 538
Query: 265 DVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQ 324
I + + EEA+++ K+M + ++ Y L++ +L+K+
Sbjct: 539 IAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKE 598
Query: 325 MAESGCHIGPLAWDALVKLHVEGGEVEKA 353
M G G + LV + G ++K+
Sbjct: 599 MRSCG-FAGDASTIGLVTNMLHDGRLDKS 626
Score = 32.7 bits (73), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 51/279 (18%), Positives = 112/279 (40%), Gaps = 9/279 (3%)
Query: 94 VVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLL---ILYKRLDKKKVADVL 150
V + L+ V + +AE++++ M + F + L+ ++ RLD+ K +
Sbjct: 329 VTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAK--HMF 386
Query: 151 LLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSG 210
LM ++ +Y LI ++ + ++ M G+ ++ T L +
Sbjct: 387 ELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQA 446
Query: 211 GRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESN---PWLDVC 267
+ A+ + K+M + + T +LL + GK + +++ + + P +
Sbjct: 447 RDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTY 506
Query: 268 MAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAE 327
IE K KVE+ +F +S + Y ++ + + L+K+M E
Sbjct: 507 NIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKE 566
Query: 328 SGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKF 366
G ++ L++ + G+ E A + L+K + F
Sbjct: 567 DGPLPNSGTYNTLIRARLRDGDRE-ASAELIKEMRSCGF 604
>sp|Q9FGR7|PP426_ARATH Pentatricopeptide repeat-containing protein At5g50280,
chloroplastic OS=Arabidopsis thaliana GN=EMB1006 PE=2
SV=1
Length = 723
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 113/273 (41%), Gaps = 21/273 (7%)
Query: 94 VVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLL- 152
+VY TL+ N++++ E +F M+DKG ++ N L+ Y R + + + LL
Sbjct: 380 IVYNTLMDAYNKSNHIEEVEGLFTEMRDKGLKPSAATYNILMDAYARRMQPDIVETLLRE 439
Query: 153 MEKENVKLTQFSYKILIDIKGQSNDLTGM--DQVVEAMKSEGIEPDSSTQAILAKHYVSG 210
ME ++ SY LI G++ ++ M D + MK G++P S + L Y
Sbjct: 440 MEDLGLEPNVKSYTCLISAYGRTKKMSDMAADAFLR-MKKVGLKPSSHSYTALIHAYSVS 498
Query: 211 GRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKL----------CES 260
G EKA A +EM + +K T +L + G ++ IWKL
Sbjct: 499 GWHEKAYASFEEMCKEGIKPSVETYTSVLDAFRRSGDTGKLMEIWKLMLREKIKGTRITY 558
Query: 261 NPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKD 320
N LD + K EA V SK + S Y L+ YA +K
Sbjct: 559 NTLLD-------GFAKQGLYIEARDVVSEFSKMGLQPSVMTYNMLMNAYARGGQDAKLPQ 611
Query: 321 LVKQMAESGCHIGPLAWDALVKLHVEGGEVEKA 353
L+K+MA + + ++ V + ++A
Sbjct: 612 LLKEMAALNLKPDSITYSTMIYAFVRVRDFKRA 644
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 78/343 (22%), Positives = 147/343 (42%), Gaps = 35/343 (10%)
Query: 105 AGNNVKKAEEVFNRMKDKGFP---------VTSFACNQLLILYKRLDKKKVADVLLLMEK 155
AG + K+ E+F +M +KG V SF C++ L K++ + MEK
Sbjct: 321 AGRSAKEVWEIFEKMSEKGVKWSQDVFGGLVKSF-CDEGL-------KEEALVIQTEMEK 372
Query: 156 ENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEK 215
+ ++ Y L+D +SN + ++ + M+ +G++P ++T IL Y + +
Sbjct: 373 KGIRSNTIVYNTLMDAYNKSNHIEEVEGLFTEMRDKGLKPSAATYNILMDAYARRMQPDI 432
Query: 216 AEAMLKEMEGDNLKEH--RWTCRLLLPLYAELGK-----ADQVARIWKLCESNPWLDVCM 268
E +L+EME L+ + +TC L+ Y K AD R+ K+ P
Sbjct: 433 VETLLREMEDLGLEPNVKSYTC--LISAYGRTKKMSDMAADAFLRMKKVG-LKPSSHSYT 489
Query: 269 AAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAES 328
A I A+ E+A A F+ M K K S + YT++L + K ++ K M
Sbjct: 490 ALIHAYSVSGWHEKAYASFEEMCKEGIKPSVETYTSVLDAFRRSGDTGKLMEIWKLMLRE 549
Query: 329 GCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHS 388
+ ++ L+ + G +A ++ + + +P +Y ++M+ YA+ G
Sbjct: 550 KIKGTRITYNTLLDGFAKQGLYIEARDVVSEFSKMG-LQPSVMTYNMLMNAYARGGQDAK 608
Query: 389 TEKIFHRMRQVGYVARFKQFQTLVQAYINAKTPAYGIRDRMRA 431
++ M + + T++ A++ +RD RA
Sbjct: 609 LPQLLKEMAALNLKPDSITYSTMIYAFVR-------VRDFKRA 644
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 120/300 (40%), Gaps = 23/300 (7%)
Query: 130 ACNQLLILYKRLDKKKVADVLLLM-----EKENVKLTQFSYKILIDIKGQSNDLTGMDQV 184
AC+ +L+ L ++++AD +LL+ +KE + + Y I S +V
Sbjct: 240 ACS---VLFTLLGRERMADYILLLLSNLPDKEEFRDVRL-YNAAISGLSASQRYDDAWEV 295
Query: 185 VEAMKSEGIEPDSSTQAILAKHYVSGGRKEK-AEAMLKEMEGDNLKEHRWTCRLLLPLYA 243
EAM + PD+ T AIL GR K + ++M +K + L+ +
Sbjct: 296 YEAMDKINVYPDNVTCAILITTLRKAGRSAKEVWEIFEKMSEKGVKWSQDVFGGLVKSFC 355
Query: 244 ELGKADQVARIWKLCE-----SNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLS 298
+ G ++ I E SN V ++A+ K N +EE E +F M K S
Sbjct: 356 DEGLKEEALVIQTEMEKKGIRSNTI--VYNTLMDAYNKSNHIEEVEGLFTEMRDKGLKPS 413
Query: 299 TKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILL 358
Y L+ YA + L+++M + G ++ L+ + G +K +
Sbjct: 414 AATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVKSYTCLISAY---GRTKKMSDMAA 470
Query: 359 KAQQQNK---FKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAY 415
A + K KP SY ++ Y+ G F M + G + + +++ A+
Sbjct: 471 DAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVETYTSVLDAF 530
>sp|Q0WPZ6|PP158_ARATH Pentatricopeptide repeat-containing protein At2g17140
OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1
Length = 874
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/298 (20%), Positives = 127/298 (42%), Gaps = 26/298 (8%)
Query: 149 VLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYV 208
VL M + + + +SY IL+D + L+ +V MK G+ PD+ T L Y
Sbjct: 348 VLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYC 407
Query: 209 SGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIW-KLCESNPWLD-- 265
S G+ + A+++L+EM +N + +TC +LL ++G+ + + K+ E LD
Sbjct: 408 SVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTV 467
Query: 266 VCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLV--- 322
C ++ ++++A + K M +V+ + + G +
Sbjct: 468 TCNIIVDGLCGSGELDKAIEIVKGM----------------RVHGSAALGNLGNSYIGLV 511
Query: 323 -KQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYA 381
+ E+ C + + L+ + G +A ++ + + K +P +Y + + +
Sbjct: 512 DDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGE-KLQPDSVAYNIFIHHFC 570
Query: 382 KRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYI--NAKTPAYGIRDRMRADNVFPN 437
K+G I S ++ M + G + + +L+ N +G+ D M+ + PN
Sbjct: 571 KQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPN 628
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/331 (22%), Positives = 142/331 (42%), Gaps = 29/331 (8%)
Query: 87 PESFRGEVVYRTLL-ANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLD-KK 144
P+++ ++ R L ++CV A E+F+ M +KG F L+ Y +
Sbjct: 145 PQTYTFNLLIRALCDSSCV-----DAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTD 199
Query: 145 KVADVLLLMEKENVKLTQFSYKILIDI---KGQSNDLTGMDQVVEAMKSEGIEPDSSTQA 201
K ++L ME V + Y ++ +G+++D +++VE M+ EG+ PD T
Sbjct: 200 KGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDD---SEKMVEKMREEGLVPDIVTFN 256
Query: 202 ILAKHYVSGGRKEKAEAMLKEMEGDNL----KEHRWTCRLLLPLYAELGKADQVARIWKL 257
G+ A + +ME D + + T L+L + ++G + +++
Sbjct: 257 SRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFES 316
Query: 258 CESNPWLDVCMAAIEAWG-------KLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYA 310
N L A+++++ + K EAE V K+M+ S Y L+
Sbjct: 317 IRENDDL----ASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLC 372
Query: 311 DHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMF 370
MLS K +V M +G + + L+ + G+V+ A S+L + + N +
Sbjct: 373 KLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAY 432
Query: 371 SSYMLIMDQYAKRGDIHSTEKIFHRMRQVGY 401
+ +L+ + K G I E++ +M + GY
Sbjct: 433 TCNILLHSLW-KMGRISEAEELLRKMNEKGY 462
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 65/156 (41%), Gaps = 1/156 (0%)
Query: 259 ESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKG 318
E+ P + + +E+ K +VE ++K M T + L++ D +
Sbjct: 107 ENKPSVYLYNLLLESCIKERRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAA 166
Query: 319 KDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMD 378
++L +M E GC + LV+ + + G +K LL A + P Y I+
Sbjct: 167 RELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLE-LLNAMESFGVLPNKVIYNTIVS 225
Query: 379 QYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQA 414
+ + G +EK+ +MR+ G V F + + A
Sbjct: 226 SFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISA 261
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/312 (20%), Positives = 122/312 (39%), Gaps = 37/312 (11%)
Query: 94 VVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVA-DVLLL 152
+ Y TLL +A+ +F M + S A N + + + K A VL
Sbjct: 525 ITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKD 584
Query: 153 MEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGR 212
MEK+ + +Y LI G N + + +++ MK +GI P+ T ++ G +
Sbjct: 585 MEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEK 644
Query: 213 KEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIE 272
E A +L EM N+ + ++ + L IE
Sbjct: 645 VEDATNLLDEMMQKNIAPNVFSFKYL--------------------------------IE 672
Query: 273 AWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHI 332
A+ K+ + A+ VF+ + + ++ A ++L K +L++ + + G +
Sbjct: 673 AFCKVPDFDMAQEVFETAVSICGQKEGLYSLMFNELLAAGQLL-KATELLEAVLDRGFEL 731
Query: 333 GPLAWDALVKLHVEGGEVEKADSILLKAQQQN-KFKPMFSSYMLIMDQYAKRGDIHSTEK 391
G + LV+ + E+E A IL K + F P ++ M ++D K G+
Sbjct: 732 GTFLYKDLVESLCKKDELEVASGILHKMIDRGYGFDP--AALMPVIDGLGKMGNKKEANS 789
Query: 392 IFHRMRQVGYVA 403
+M ++ V
Sbjct: 790 FADKMMEMASVG 801
>sp|Q9SUD8|PP340_ARATH Pentatricopeptide repeat-containing protein At4g28010
OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1
Length = 704
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 107/456 (23%), Positives = 194/456 (42%), Gaps = 63/456 (13%)
Query: 4 PDISIHSTLTKYAEEGNDLSRA-EIALAMA------NLRTRRM----YGKALQLSEWLET 52
PD+ ++T+ + EG +L +A E+A M +L T + + KA ++ E +
Sbjct: 175 PDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGF 234
Query: 53 NKKLDF--IERD---YASCLDLIAKLRGLQKAESYIQKIPESFRGE----VVYRTLLANC 103
K++ F +E D Y S + L + ++ ++ E RG+ + Y TL+
Sbjct: 235 LKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLE--RGDSPCAITYNTLIRGF 292
Query: 104 VAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLL-LMEKENVKLTQ 162
+K+A E+F M ++G + L+ + K K A LL LM +++ +
Sbjct: 293 CKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNA 352
Query: 163 FSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKE 222
+Y I+I+ + + ++VE MK PD+ T IL + G ++A +L
Sbjct: 353 VTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYL 412
Query: 223 MEGDNLKEHRWTCRLLLPLYAELGKADQV---ARIWKLCESNPW---LDVCMAAIEAWGK 276
M LK+ +T D + A I LC+ N LD+ +E G
Sbjct: 413 M----LKDSSYT------------DPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGA 456
Query: 277 ---------LNKVEEAEAVFKRMSKTWKKLS-------TKHYTALLKVYADHKMLSKGKD 320
LN +A V K M + WK++S + YTA++ + ML+ K
Sbjct: 457 GDRVTTNILLNSTLKAGDVNKAM-ELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKG 515
Query: 321 LVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQY 380
L+ +M S ++ L+ + G +++A + + Q+ N F P S+ +++D
Sbjct: 516 LLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNF-PDVVSFNIMIDGS 574
Query: 381 AKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYI 416
K GDI S E + M + G + L+ ++
Sbjct: 575 LKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFL 610
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 71/361 (19%), Positives = 134/361 (37%), Gaps = 45/361 (12%)
Query: 98 TLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVA-DVLLLMEKE 156
L+A V N + A + +M + + + + LL Y ++ K A VL LM K
Sbjct: 77 NLMAKLVRSRNHELAFSFYRKMLETDTFINFVSLSGLLECYVQMRKTGFAFGVLALMLKR 136
Query: 157 NVKLTQFSYKILIDIKGQSNDLTGMDQV--VEAMKSEGIEPDSSTQAILAKHYVSGGRKE 214
+++ IL+ KG +L V + M+ + PD + + + + G E
Sbjct: 137 GFAFNVYNHNILL--KGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELE 194
Query: 215 KAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAW 274
KA + EM+G W L W I+A+
Sbjct: 195 KALELANEMKGSGCS-------------------------WSLV---TW----GILIDAF 222
Query: 275 GKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGP 334
K K++EA K M + YT+L++ + D L +GK L ++ E G
Sbjct: 223 CKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCA 282
Query: 335 LAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFH 394
+ ++ L++ + G++++A I + + +P +Y ++D G ++ +
Sbjct: 283 ITYNTLIRGFCKLGQLKEASEI-FEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLN 341
Query: 395 RMRQVGYVARFKQFQTLVQAYINAKTPAYGI-------RDRMRADNVFPNKALAAQVAQV 447
M + + ++ A + + R R DN+ N L A+
Sbjct: 342 LMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKG 401
Query: 448 D 448
D
Sbjct: 402 D 402
Score = 34.3 bits (77), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/104 (20%), Positives = 46/104 (44%)
Query: 153 MEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGR 212
M+++N S+ I+ID ++ D+ + ++ M G+ PD T + L ++ G
Sbjct: 555 MQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGY 614
Query: 213 KEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWK 256
++A + +M + C +L G+ D++ + K
Sbjct: 615 LDEAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLTELVK 658
Score = 33.5 bits (75), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 67/148 (45%), Gaps = 8/148 (5%)
Query: 96 YRTLLANCVAGNNVKKAEEVFNRM-KDKGFP-VTSFACNQLLI--LYKRLDKKKVADVLL 151
Y LL++ ++ +A +F M +D FP V SF ++I K D K +L+
Sbjct: 532 YNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSF---NIMIDGSLKAGDIKSAESLLV 588
Query: 152 LMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGG 211
M + + F+Y LI+ + L + M G EPD+ + K+ +S G
Sbjct: 589 GMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLKYCISQG 648
Query: 212 RKEKAEAMLKEM-EGDNLKEHRWTCRLL 238
+K ++K++ + D + + TC ++
Sbjct: 649 ETDKLTELVKKLVDKDIVLDKELTCTVM 676
Score = 33.5 bits (75), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 38/194 (19%), Positives = 79/194 (40%), Gaps = 3/194 (1%)
Query: 162 QFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLK 221
+ + IL++ ++ D+ ++ + + I +S T + + G A+ +L
Sbjct: 459 RVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLC 518
Query: 222 EMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWK-LCESNPWLDVCMAAIEAWGKL--N 278
+M L+ + LL + G DQ R+++ + N + DV I G L
Sbjct: 519 KMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAG 578
Query: 279 KVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWD 338
++ AE++ MS+ Y+ L+ + L + +M +SG D
Sbjct: 579 DIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICD 638
Query: 339 ALVKLHVEGGEVEK 352
+++K + GE +K
Sbjct: 639 SVLKYCISQGETDK 652
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 85/418 (20%), Positives = 153/418 (36%), Gaps = 84/418 (20%)
Query: 109 VKKAEEVFNRMKDKGFPVTSFACNQLLILYKR-LDKKKVADVLLLMEKENVKLTQFSYKI 167
++KA+ +F+ M G + A L+ Y R + ++ ++L+ M+K N+ ++ ++Y
Sbjct: 363 MEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGT 422
Query: 168 LIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGG---------------- 211
++ S DL G +V+ M + G P+ L K ++
Sbjct: 423 VVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQG 482
Query: 212 -------------------RKEKAEAMLKEMEGDNLKEHRWTCRLLLPLY---AELGKAD 249
R ++A + L EM + LK + +T + Y +E AD
Sbjct: 483 IAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASAD 542
Query: 250 QVARIWKLCESNPWLDVCMAAIEAW---GKL----------------------------- 277
+ + + C P +C I + GK+
Sbjct: 543 KYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGL 602
Query: 278 ---NKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGP 334
+KV++AE +F+ M Y L+ ++ + K + +M E G
Sbjct: 603 FKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNV 662
Query: 335 LAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFH 394
+ ++ L+ GE+EKA LL P +Y I+D Y K GD+ ++F
Sbjct: 663 IIYNMLLGGFCRSGEIEKAKE-LLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFD 721
Query: 395 RMRQVGYVARFKQFQTLVQAYINAKTPAYGIRDRMRADNVFPN--KALAAQVAQVDAF 450
M+ G V + TLV + D RA +F K A+ A +A
Sbjct: 722 EMKLKGLVPDSFVYTTLVDGCCR-------LNDVERAITIFGTNKKGCASSTAPFNAL 772
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 75/390 (19%), Positives = 147/390 (37%), Gaps = 81/390 (20%)
Query: 76 LQKAESYIQKIPESFRGEVVYRTLLANCVAGNN-VKKAEEVFNRMKDKGFPVTSFACNQL 134
++ +Y + + G+ T+L N + N+ V AEE+F M+ KG
Sbjct: 574 IEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIA--------- 624
Query: 135 LILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIE 194
DV FSY +LI+ + ++ + + M EG+
Sbjct: 625 ------------PDV-------------FSYGVLINGFSKLGNMQKASSIFDEMVEEGLT 659
Query: 195 PDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARI 254
P+ +L + G EKA+ +L EM L + T ++ Y + G + R+
Sbjct: 660 PNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRL 719
Query: 255 W---KLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYAD 311
+ KL P V ++ +LN VE A +F K
Sbjct: 720 FDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKK------------------- 760
Query: 312 HKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSIL--LKAQQQNKF-KP 368
GC ++AL+ + G+ E +L L ++F KP
Sbjct: 761 -----------------GCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKP 803
Query: 369 MFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAY--INAKTPAYGIR 426
+Y +++D K G++ + +++FH+M+ + + +L+ Y + + + +
Sbjct: 804 NDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVF 863
Query: 427 DRMRADNVFPNKALAAQVAQVDAFRKTAVS 456
D A + P+ + + + ++AF K ++
Sbjct: 864 DEAIAAGIEPDHIMYSVI--INAFLKEGMT 891
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 116/289 (40%), Gaps = 12/289 (4%)
Query: 162 QFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLK 221
+++Y +LID + L ++ M S G+ D+ T ++L + G + A+ ++
Sbjct: 277 KYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVH 336
Query: 222 EM--EGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESN---PWLDVCMAAIEAWGK 276
EM G N+K + + C + + ++ G ++ ++ ++ P + IE + +
Sbjct: 337 EMVSHGINIKPYMYDC--CICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCR 394
Query: 277 LNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLA 336
V + + M K +S Y ++K L ++VK+M SGC +
Sbjct: 395 EKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVI 454
Query: 337 WDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMD-QYAKRGDIHSTEKIFHR 395
+ L+K ++ A +L + ++Q +F LI+ AKR D
Sbjct: 455 YTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMD--EARSFLVE 512
Query: 396 MRQVGYVARFKQFQTLVQAYINAKTPAYGIR--DRMRADNVFPNKALAA 442
M + G + + YI A A + MR V PNK L
Sbjct: 513 MVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCT 561
Score = 38.1 bits (87), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 60/309 (19%), Positives = 122/309 (39%), Gaps = 14/309 (4%)
Query: 63 YASCLDLIAKLRGLQKAESYIQKIPES--FRGEVVYRTLLANCVAGNNVKKAEEVFNRMK 120
Y ++ +KL +QKA S ++ E ++Y LL ++KA+E+ + M
Sbjct: 630 YGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMS 689
Query: 121 DKGF-PVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLT 179
KG P C + K D + + M+ + + F Y L+D + ND+
Sbjct: 690 VKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVE 749
Query: 180 GMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEG--DNL-KEHRWTCR 236
+ K + A++ + G + K E + + M+G D K + T
Sbjct: 750 RAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYN 809
Query: 237 LLLPLYAELGKADQVARIW-KLCESN--PWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKT 293
+++ + G + ++ ++ +N P + + + + K+ + E VF
Sbjct: 810 IMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAA 869
Query: 294 WKKLSTKHYTALLKVYADHKMLSKGKDLVKQM-----AESGCHIGPLAWDALVKLHVEGG 348
+ Y+ ++ + M +K LV QM + GC + AL+ + G
Sbjct: 870 GIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVG 929
Query: 349 EVEKADSIL 357
E+E A+ ++
Sbjct: 930 EMEVAEKVM 938
>sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100,
mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2
SV=1
Length = 816
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 67/332 (20%), Positives = 137/332 (41%), Gaps = 9/332 (2%)
Query: 86 IPESFRGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLL-ILYKRLDKK 144
+P++F +++ +N + A V+ D G + ++ C+ LL L K +
Sbjct: 316 VPDAFTFSILFDGYSSN----EKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIE 371
Query: 145 KVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILA 204
K ++L + + + Y +ID + DL G +EAM+ +G++PD L
Sbjct: 372 KAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLI 431
Query: 205 KHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESN--- 261
+ + G E AE + +M+ + T +L+ Y + D+ I K E N
Sbjct: 432 RRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTM 491
Query: 262 PWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDL 321
P + I K +K+ EA+ V + M + Y L+ +
Sbjct: 492 PNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRF 551
Query: 322 VKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYA 381
K+M + G + + ++ L+ G++ +A+ +LL+ ++ KP +Y ++ Y
Sbjct: 552 SKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKG-LKPDVFTYNSLISGYG 610
Query: 382 KRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQ 413
G++ ++ M++ G K + L+
Sbjct: 611 FAGNVQRCIALYEEMKRSGIKPTLKTYHLLIS 642
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 76/385 (19%), Positives = 149/385 (38%), Gaps = 65/385 (16%)
Query: 36 TRRMYGKALQLSEWLETNKKLDFIERDYASCLDLIAKLRGLQKAESYIQKIPESFRGEVV 95
++ MYGKA+Q + L D L+L +++ + + P F +
Sbjct: 178 SKFMYGKAIQAAVKLS----------DVGKGLELFNRMK-------HDRIYPSVF----I 216
Query: 96 YRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILY-KRLDKKKVADVLLLME 154
Y L+ G + AE++F+ M + + N L+ Y K + +K V M+
Sbjct: 217 YNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMK 276
Query: 155 KENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKE 214
++++ + ++ L+ ++ + + V++ MK G PD+ T +IL Y S + E
Sbjct: 277 ADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAE 336
Query: 215 KAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAAIEAW 274
A + + +K + +TC +LL A
Sbjct: 337 AALGVYETAVDSGVKMNAYTCSILL--------------------------------NAL 364
Query: 275 GKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGP 334
K K+E+AE + R + Y ++ Y L + ++ M + G
Sbjct: 365 CKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDH 424
Query: 335 LAWDALVKLHVEGGEVEKADSILLKAQQQNKFK-----PMFSSYMLIMDQYAKRGDIHST 389
LA++ L++ E GE+E A+ ++ NK K P +Y +++ Y ++ +
Sbjct: 425 LAYNCLIRRFCELGEMENAE------KEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKC 478
Query: 390 EKIFHRMRQVGYVARFKQFQTLVQA 414
I M G + + TL+
Sbjct: 479 FDILKEMEDNGTMPNVVSYGTLINC 503
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/313 (22%), Positives = 128/313 (40%), Gaps = 44/313 (14%)
Query: 94 VVYRTLLANCVA-GNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLL 152
V Y TL+ NC+ G+ + +A+ V M+D+G N L+ K K+ D
Sbjct: 495 VSYGTLI-NCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLI--DGCCSKGKIEDAFRF 551
Query: 153 ---MEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVS 209
M K+ ++L +Y LID + L+ + ++ + +G++PD T L Y
Sbjct: 552 SKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGF 611
Query: 210 GGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMA 269
G ++ A+ +EM+ +K T LL+ L + G
Sbjct: 612 AGNVQRCIALYEEMKRSGIKPTLKTYHLLISLCTKEG----------------------- 648
Query: 270 AIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESG 329
+E E +F MS L Y +L YA H + K +L KQM E
Sbjct: 649 ----------IELTERLFGEMSLKPDLLV---YNGVLHCYAVHGDMEKAFNLQKQMIEKS 695
Query: 330 CHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHST 389
+ +++L+ ++ G++ + S L+ + +P +Y +I+ + + D S
Sbjct: 696 IGLDKTTYNSLILGQLKVGKLCEVRS-LIDEMNAREMEPEADTYNIIVKGHCEVKDYMSA 754
Query: 390 EKIFHRMRQVGYV 402
+ M++ G++
Sbjct: 755 YVWYREMQEKGFL 767
Score = 40.8 bits (94), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 50/255 (19%), Positives = 96/255 (37%), Gaps = 37/255 (14%)
Query: 163 FSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKE 222
FSY +L + +S ++ + A+++EGI P S + +L H V
Sbjct: 110 FSYLLLSVLLNESKMISEAADLFFALRNEGIYPSSDSLTLLLDHLV-------------- 155
Query: 223 MEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESN--PWLDVCMAAIEAWGKLNKV 280
K+ R T + L + ES+ P + AI+A KL+ V
Sbjct: 156 ----KTKQFRVTINVFL----------------NILESDFRPSKFMYGKAIQAAVKLSDV 195
Query: 281 EEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDAL 340
+ +F RM S Y L+ K ++ + L +M + ++ L
Sbjct: 196 GKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTL 255
Query: 341 VKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG 400
+ + + G EK+ + + + + +P ++ ++ K G + E + M+ +G
Sbjct: 256 IDGYCKAGNPEKSFKV-RERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLG 314
Query: 401 YVARFKQFQTLVQAY 415
+V F L Y
Sbjct: 315 FVPDAFTFSILFDGY 329
Score = 40.4 bits (93), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
Query: 336 AWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHR 395
A A VKL G +E L + ++ P Y +++D K ++ E++F
Sbjct: 185 AIQAAVKLSDVGKGLE-----LFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDE 239
Query: 396 MRQVGYVARFKQFQTLVQAYINAKTP--AYGIRDRMRADNVFPN 437
M + + TL+ Y A P ++ +R+RM+AD++ P+
Sbjct: 240 MLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPS 283
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 95/453 (20%), Positives = 171/453 (37%), Gaps = 72/453 (15%)
Query: 4 PDISIHSTLTKYAEEGNDLSRAEIA---LAMANLR----TRRMYGKAL-QLSEWLETNKK 55
P S ++ L + + + L A + +++ANLR T R + +L ++ +W E
Sbjct: 233 PSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREA--- 289
Query: 56 LDFIERD--------YASCLDLIAKLRGLQKAESYIQKI--PESFRGEVVYRTLLANCVA 105
L +E + Y + + + ++A ++ ++ V Y TLL C+
Sbjct: 290 LTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLN 349
Query: 106 GNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFS- 164
+ + + V N M +G + N L+ Y A LL K+ VK
Sbjct: 350 KKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLL---KKMVKCGHMPG 406
Query: 165 ---YKILI-DIKGQSNDLTG-----MDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEK 215
Y ILI I G + L ++ M + G+ + + + S G+ EK
Sbjct: 407 YVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEK 466
Query: 216 AEAMLKEMEGDNL--------KEHRWTCR-----LLLPLYAELGKADQVARIWKLCESNP 262
A ++++EM G K + C L L+ E+ + VA ++
Sbjct: 467 AFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTY----- 521
Query: 263 WLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLV 322
++++ K +E+A F M + + YTAL+ Y K +S +L
Sbjct: 522 -----TIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELF 576
Query: 323 KQMAESGCHIGPLAWDALVKLHVEGGEVEKADSIL---------------LKAQQQNKFK 367
+ M GC + + AL+ H + G+VEKA I K N +
Sbjct: 577 ETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSER 636
Query: 368 PMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVG 400
P +Y ++D + K + K+ M G
Sbjct: 637 PNVVTYGALLDGFCKSHRVEEARKLLDAMSMEG 669
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 65/354 (18%), Positives = 141/354 (39%), Gaps = 29/354 (8%)
Query: 103 CVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLLL-MEKENVKLT 161
C AG +KA V M +GF + +++L K ++A +L M++ +
Sbjct: 459 CSAGK-YEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVAD 517
Query: 162 QFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLK 221
++Y I++D ++ + + M+ G P+ T L Y+ + A + +
Sbjct: 518 VYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFE 577
Query: 222 EMEGDNLKEHRWTCRLLLPLYAELGKADQVARIW-KLCESNPWLDVCMAAIEAWGKLNKV 280
M + + T L+ + + G+ ++ +I+ ++C S V
Sbjct: 578 TMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSK-----------------DV 620
Query: 281 EEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDAL 340
+ + FK+ ++ + Y ALL + + + + L+ M+ GC + +DAL
Sbjct: 621 PDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDAL 680
Query: 341 VKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQY--AKRGDIHSTEKIFHRMRQ 398
+ + G++++A + + + F +Y ++D+Y KR D+ S K+ +M +
Sbjct: 681 IDGLCKVGKLDEAQEVKTEMSEHG-FPATLYTYSSLIDRYFKVKRQDLAS--KVLSKMLE 737
Query: 399 VGYVARFKQFQTLVQAY--INAKTPAYGIRDRMRADNVFPNKALAAQVAQVDAF 450
+ ++ + AY + M PN + A +D F
Sbjct: 738 NSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPN--VVTYTAMIDGF 789
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 73/370 (19%), Positives = 146/370 (39%), Gaps = 67/370 (18%)
Query: 78 KAESYIQKIPESFRGE------VVYRTLL-ANCVAGNNVKKAEEVFNRM-KDKGFPVTSF 129
K SY ++ E+ E V Y L+ +C AG V+KA ++F RM K P
Sbjct: 567 KKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQ-VEKACQIFERMCGSKDVP---- 621
Query: 130 ACNQLLILYKRLDKKKVADVLLLMEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMK 189
+ + +K+ D E+ NV +Y L+D +S+ + ++++AM
Sbjct: 622 ---DVDMYFKQYDDNS--------ERPNV----VTYGALLDGFCKSHRVEEARKLLDAMS 666
Query: 190 SEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKAD 249
EG EP+ L G+ ++A+ + EM +T L+ Y ++ + D
Sbjct: 667 MEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQD 726
Query: 250 QVARIW-KLCESN--PWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALL 306
+++ K+ E++ P + + I+ K+ K +EA +K
Sbjct: 727 LASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEA----------YK----------- 765
Query: 307 KVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKF 366
L++ M E GC + + A++ G++E LL+
Sbjct: 766 --------------LMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLE-LLERMGSKGV 810
Query: 367 KPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAKTPAYGIR 426
P + +Y +++D K G + + M+Q + ++ +++ + + G+
Sbjct: 811 APNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFIESLGLL 870
Query: 427 DRMRADNVFP 436
D + D+ P
Sbjct: 871 DEIGQDDTAP 880
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/232 (19%), Positives = 94/232 (40%), Gaps = 45/232 (19%)
Query: 93 EVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVLL- 151
++VY L+ + +A+EV M + GFP T + + L+ Y ++ ++ +A +L
Sbjct: 674 QIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLS 733
Query: 152 -----------------------------------LMEKENVKLTQFSYKILIDIKGQSN 176
+ME++ + +Y +ID G
Sbjct: 734 KMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIG 793
Query: 177 DLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCR 236
+ +++E M S+G+ P+ T +L H G + A +L+EM+ + H R
Sbjct: 794 KIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYR 853
Query: 237 LLLPLYAE-----LGKADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEA 283
++ + + LG D++ + ++ P+L V I+ K ++E A
Sbjct: 854 KVIEGFNKEFIESLGLLDEIGQD----DTAPFLSVYRLLIDNLIKAQRLEMA 901
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/265 (20%), Positives = 97/265 (36%), Gaps = 9/265 (3%)
Query: 188 MKSEGIEPDSSTQAILAKHYVSGGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGK 247
+K P ST L + ++ R + A + +EM NL+ +T R ++GK
Sbjct: 226 LKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGK 285
Query: 248 ADQVARIWKLCESNPWLDVCMAAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLK 307
+ + + P I + + EEA RM T + Y+ LL
Sbjct: 286 WREALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLC 345
Query: 308 VYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFK 367
+ K L + K ++ M GC+ P +++LV + G+ A LLK +
Sbjct: 346 GCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYK-LLKKMVKCGHM 404
Query: 368 PMFSSYMLIMDQYAKRGD------IHSTEKIFHRMRQVGYVARFKQFQTLVQAYINAK-- 419
P + Y +++ D + EK + M G V + + +A
Sbjct: 405 PGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKY 464
Query: 420 TPAYGIRDRMRADNVFPNKALAAQV 444
A+ + M P+ + ++V
Sbjct: 465 EKAFSVIREMIGQGFIPDTSTYSKV 489
>sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630,
mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3
SV=1
Length = 627
Score = 65.9 bits (159), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 70/332 (21%), Positives = 128/332 (38%), Gaps = 37/332 (11%)
Query: 91 RGEVVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLLILYKRLDKKKVADVL 150
+ +++ L+ C V +A E F MK+KGF + CN +L L RL++ + A V
Sbjct: 153 KSTILFDLLVRCCCQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVF 212
Query: 151 LL-MEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVS 209
M + +K +++ I+I++ + L + M+ GI+P T L + +
Sbjct: 213 YADMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSL 272
Query: 210 GGRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVAR---------------- 253
GR E A ++ EM+ + T +L G+A +V R
Sbjct: 273 RGRIEGARLIISEMKSKGFQPDMQTYNPILSWMCNEGRASEVLREMKEIGLVPDSVSYNI 332
Query: 254 IWKLCESNPWLDVCMA-------------------AIEAWGKLNKVEEAEAVFKRMSKTW 294
+ + C +N L++ A I NK+E AE + + + +
Sbjct: 333 LIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKG 392
Query: 295 KKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWDALVKLHVEGGEVEKAD 354
L + Y L+ Y H K L +M G + +L+ + + +AD
Sbjct: 393 IVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREAD 452
Query: 355 SILLKAQQQNKFKPMFSSYMLIMDQYAKRGDI 386
+ K + KP +MD + G++
Sbjct: 453 ELFEKVVGKG-MKPDLVMMNTLMDGHCAIGNM 483
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 85/418 (20%), Positives = 164/418 (39%), Gaps = 72/418 (17%)
Query: 67 LDLIAKLRGLQKAESYIQKIPESFRGE---VVYRTLLANCVAGNNVKKAEEVFNRMKDKG 123
++++ K L+KA+ ++ I E F + V Y TL+ ++ A + + MK KG
Sbjct: 232 INVLCKEGKLKKAKGFL-GIMEVFGIKPTIVTYNTLVQGFSLRGRIEGARLIISEMKSKG 290
Query: 124 F--------PVTSFACNQ-----LLILYKR--LDKKKVADVLLL---------------- 152
F P+ S+ CN+ +L K L V+ +L+
Sbjct: 291 FQPDMQTYNPILSWMCNEGRASEVLREMKEIGLVPDSVSYNILIRGCSNNGDLEMAFAYR 350
Query: 153 --MEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSG 210
M K+ + T ++Y LI N + + ++ ++ +GI DS T IL Y
Sbjct: 351 DEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILINGYCQH 410
Query: 211 GRKEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESNPWLDVCMAA 270
G +KA A+ EM D ++ ++T Y L I+ LC
Sbjct: 411 GDAKKAFALHDEMMTDGIQPTQFT-------YTSL--------IYVLCRK---------- 445
Query: 271 IEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGC 330
NK EA+ +F+++ K L+ + + + L+K+M
Sbjct: 446 -------NKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSI 498
Query: 331 HIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTE 390
+ + ++ L++ G+ E+A L+ ++ KP SY ++ Y+K+GD
Sbjct: 499 NPDDVTYNCLMRGLCGEGKFEEARE-LMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAF 557
Query: 391 KIFHRMRQVGYVARFKQFQTLVQAYINAKTP--AYGIRDRMRADNVFPNKALAAQVAQ 446
+ M +G+ + L++ + A + M+++ + PN + V +
Sbjct: 558 MVRDEMLSLGFNPTLLTYNALLKGLSKNQEGELAEELLREMKSEGIVPNDSSFCSVIE 615
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/292 (19%), Positives = 122/292 (41%), Gaps = 6/292 (2%)
Query: 153 MEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGR 212
ME + V+ +Y LI + +++ M I P+ T L +V G+
Sbjct: 286 MENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGK 345
Query: 213 KEKAEAMLKEMEGDNLKEHRWTCRLLLPLYAELGKADQVARIWKLCESN---PWLDVCMA 269
+AE + EM ++ +T L+ + + D+ +++L S P +
Sbjct: 346 LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNT 405
Query: 270 AIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESG 329
I + K +++E +F+ MS+ +T YT L+ + + + + KQM G
Sbjct: 406 LINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDG 465
Query: 330 CHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHST 389
H + ++ L+ + G++EKA ++ + Q++K +P +Y ++++ K G +
Sbjct: 466 VHPNIMTYNTLLDGLCKNGKLEKA-MVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDG 524
Query: 390 EKIFHRMRQVGYVARFKQFQTLVQAYI--NAKTPAYGIRDRMRADNVFPNKA 439
+F + G + T++ + K A + +MR D P+
Sbjct: 525 WDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLPDSG 576
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 67/351 (19%), Positives = 139/351 (39%), Gaps = 13/351 (3%)
Query: 96 YRTLLANCVAGNNVKKAEEVFNRM-KDKGFPVTSFACNQLLILYKRLDKKKVADVLLL-- 152
YR +L N + + A +F M K + P + F N+LL ++ KK V+ L
Sbjct: 53 YREILRNGLHSMKLDDAIGLFGGMVKSRPLP-SIFEFNKLLSAIAKM--KKFDLVISLGE 109
Query: 153 -MEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGG 211
M++ + ++Y ILI+ + + ++ ++ M G EP T + L Y G
Sbjct: 110 KMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGK 169
Query: 212 RKEKAEAMLKEMEGDNLKEHRWTCRLLL-PLYAELGKADQVARIWKLCE--SNPWLDVCM 268
R A A++ +M + T L+ L+ ++ VA + ++ + P L
Sbjct: 170 RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYG 229
Query: 269 AAIEAWGKLNKVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAES 328
+ K ++ A + +M + + Y+ ++ ++ +L +M
Sbjct: 230 VVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENK 289
Query: 329 GCHIGPLAWDALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHS 388
G + + +L+ A S LL + K P ++ ++D + K G +
Sbjct: 290 GVRPNVITYSSLISCLCNYERWSDA-SRLLSDMIERKINPNVVTFNALIDAFVKEGKLVE 348
Query: 389 TEKIFHRMRQVGYVARFKQFQTLVQAYI--NAKTPAYGIRDRMRADNVFPN 437
EK++ M + + +L+ + + A + + M + + FPN
Sbjct: 349 AEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPN 399
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 1/134 (0%)
Query: 94 VVYRTLLANCVAGNNVKKAEEVFNRMKDKGFPVTSFACNQLL-ILYKRLDKKKVADVLLL 152
V Y TL+ + A+ VF +M G N LL L K +K V
Sbjct: 436 VTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEY 495
Query: 153 MEKENVKLTQFSYKILIDIKGQSNDLTGMDQVVEAMKSEGIEPDSSTQAILAKHYVSGGR 212
+++ ++ T ++Y I+I+ ++ + + ++ +G++PD + + G
Sbjct: 496 LQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGL 555
Query: 213 KEKAEAMLKEMEGD 226
KE+A+A+ ++M D
Sbjct: 556 KEEADALFRKMRED 569
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 70/176 (39%), Gaps = 5/176 (2%)
Query: 279 KVEEAEAVFKRMSKTWKKLSTKHYTALLKVYADHKMLSKGKDLVKQMAESGCHIGPLAWD 338
++ +A A+ +M + + T +T L+ H S+ LV +M + GC + +
Sbjct: 170 RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYG 229
Query: 339 ALVKLHVEGGEVEKADSILLKAQQQNKFKPMFSSYMLIMDQYAKRGDIHSTEKIFHRMRQ 398
+V + G+++ A + LL + K + Y ++D K +F M
Sbjct: 230 VVVNGLCKRGDIDLAFN-LLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMEN 288
Query: 399 VGYVARFKQFQTLVQAYINAK--TPAYGIRDRMRADNVFPNKALAAQVAQVDAFRK 452
G + +L+ N + + A + M + PN + A +DAF K
Sbjct: 289 KGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPN--VVTFNALIDAFVK 342
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 156,882,528
Number of Sequences: 539616
Number of extensions: 6261689
Number of successful extensions: 21627
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 204
Number of HSP's that attempted gapping in prelim test: 18778
Number of HSP's gapped (non-prelim): 1589
length of query: 460
length of database: 191,569,459
effective HSP length: 121
effective length of query: 339
effective length of database: 126,275,923
effective search space: 42807537897
effective search space used: 42807537897
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)